| transfrag-id | Transfrag identifiers. Identifiers for transfrags that were merged during manual curation are concatenated by '|' |
|---|---|
| transfrag-chr | Transfrag Chromosome |
| transfrag-start | Transfrag Start position |
| transfrag-end | Transfrag End position |
| transfrag-strand | Transfrag Strand |
| orientation | Orientation relative to neighboring genes. Ts - Tandem sense; Ta - Tandem antisense; D - Diverging; C - Converging |
| termination_defect | Indicates putative termination defects for transfrags that are within 100bp of the end of an upstream curated transcript (extension-transcript) or within 226 bp of an upstream ORF (extension-ORF). |
| upstream-name | Name of the transcript upstream the 5' end of the transfrag |
| upstream-start | Start position of the upstream transcript |
| upstream-end | End position of the upstream transcript |
| upstream-strand | Strand of the upstream transcript |
| downstream-name | Name of the transcript downstream the 5' end of the transfrag |
| downstream-start | Start position of the downstream transcript |
| downstream-end | End position of the downstream transcript |
| downstream-strand | Strand of the downstream transcript |