motif_id Species Gene_ID gene_name source IUPAC_motif PWM_file PFM_file 349_15769874 Caenorhabditis_elegans WBGene00001401 fbf-1 yeast three-hybrid screen UAVDHHYDUGUAHHAUWHNNNN 305_18579869 Caenorhabditis_elegans WBGene00004241 puf-5 yeast three-hybrid screen CYCUGUAYYYUGU 1273_16244662 Caenorhabditis_elegans WBGene00004244 puf-8 yeast three-hybrid screen UGUANHAUAD 1274_16244662 Caenorhabditis_elegans WBGene00001402 fbf-2 yeast three-hybrid screen UGUAHHAUA 145_9163526 Caenorhabditis_elegans WBGene00004723 sap-49 SELEX CGUGUGAG 145_9163526.pwm 145_9163526.pfm 131_11376140 Cricetulus_griseus n/a NCL SELEX UGCACAGAAGG 131_11376140.pwm 131_11376140.pfm 1026_10858445 Cricetulus_griseus n/a NCL SELEX AUUCGANCCGNG 1026_10858445.pwm 1026_10858445.pfm 36_12574126 Dani_ rerio ENSDARG00000014746 a2bp1 SELEX GCAUG 36_12574126.pwm 36_12574126.pfm 671_18557632 Drosophila_melanogaster FBgn0053197 mbl SELEX AGUCU 804_7664738 Drosophila_melanogaster FBgn0010252 Rbp1 SELEX DCADCUUUA 804_7664738.1 Drosophila_melanogaster FBgn0010252 Rbp1 SELEX AUCYNNA 839_10037720 Drosophila_melanogaster FBgn0002780 mod SELEX UUACNNNNNGURGWNNNNN 840_10037720 Drosophila_melanogaster FBgn0002780 mod SELEX UUACNNNNNGURGWNNNNN 34_15781475 Drosophila_melanogaster FBgn0260010 rump RIP-chip GGAGG 477_17971870 Drosophila_melanogaster FBgn0011640 lark RIP-chip ACAAA 254_1714588 Drosophila_melanogaster FBgn0003575 su(s) SELEX UCAGUAGUCU 254_1714588.pwm 254_1714588.pfm 323_16537387 Drosophila_melanogaster FBgn0003165 pum RIP-chip HHUGUAHAUAHDHWDD 323_16537387.pwm 323_16537387.pfm 802_9111335 Drosophila_melanogaster FBgn0004587 B52 SELEX GRUCAACCNGGCGACMG 802_9111335.pwm 802_9111335.pfm 915_11565747 Drosophila_melanogaster FBgn0014870 Psi SELEX RCYYCUURYRC 915_11565747.pwm 915_11565747.pfm 1186_17893325 Gallus_gallus n/a KHSRP SELEX GUCC 1186_17893325.pwm 1186_17893325.pfm 1185_17893325 Gallus_gallus n/a KHSRP SELEX CCCC 1185_17893325.pwm 1185_17893325.pfm 39_12419250 Homo_sapiens ENSG00000197451 HNRNPAB SELEX ACAAAGACAAA 46_9214659 Homo_sapiens ENSG00000011304 PTBP1 SELEX UCUU 432_11604510 Homo_sapiens ENSG00000145907 G3BP1 SELEX ACCCMYMSGCMS 471_15805463 Homo_sapiens ENSG00000102081 FMR1 SELEX GGGCKAAGGARK 471_15805463.1 Homo_sapiens ENSG00000102081 FMR1 SELEX KAGCGRCUGG 489_12403470 Homo_sapiens ENSG00000116560 SFPQ SELEX UGGAGAGGAAC 490_12403470 Homo_sapiens ENSG00000147140 NONO SELEX GAGAGGAAC 547_9546399 Homo_sapiens ENSG00000136527 TRA2B SELEX GAA 679_9154818 Homo_sapiens ENSG00000139910 NOVA1 SELEX UCAUYUCAUYUCAUY 681_10811881 Homo_sapiens ENSG00000139910 NOVA1 SELEX UCAY 983_9037021 Homo_sapiens ENSG00000100650 SFRS5 SELEX UGGGAGCRGUYRGCUCGY 984_9037021 Homo_sapiens ENSG00000100650 SFRS5 SELEX UGGGAGCRGUYRGCUCGY 985_9037021 Homo_sapiens ENSG00000100650 SFRS5 SELEX UGGGAGCRGUYRGCUCGY 193_18367721 Homo_sapiens ENSG00000128016 ZFP36 RIP-chip AAUAA 193_18367721.1 Homo_sapiens ENSG00000128016 ZFP36 RIP-chip HCYUBY 193_18367721.2 Homo_sapiens ENSG00000128016 ZFP36 RIP-chip CUUGU 193_18367721.3 Homo_sapiens ENSG00000128016 ZFP36 RIP-chip UUGUGS 194_18256032 Homo_sapiens ENSG00000128016 ZFP36 RIP-chip UUAUUUAUU 194_18256032.1 Homo_sapiens ENSG00000128016 ZFP36 RIP-chip AUUUA 229_19116412 Homo_sapiens ENSG00000136450 SFRS1 CLIP-seq GAAGAA 278_20371350 Homo_sapiens ENSG00000055917 PUM2 PAR-clip UGUANAUA 279_20371350 Homo_sapiens ENSG00000112531 QKI PAR-clip ACUAAC 309_18776931 Homo_sapiens ENSG00000134644 PUM1 RIP-chip UGUAHAUA 1147_18776931 Homo_sapiens ENSG00000055917 PUM2 RIP-chip UGUAHAUA 355_20371350 Homo_sapiens ENSG00000159217 IGF2BP1 PAR-clip CAU 356_20371350 Homo_sapiens ENSG00000073792 IGF2BP2 PAR-clip CAU 357_20371350 Homo_sapiens ENSG00000136231 IGF2BP3 PAR-clip CAUU 500_17682065 Homo_sapiens ENSG00000151923 TIAL1 RIP-chip UUGCCACCUCCUGCUCCUGCCCAGACAG 560_17925491 Homo_sapiens ENSG00000135486 HNRNPA1 RIP-chip UAGGGW 1182_18411299 Homo_sapiens ENSG00000134644 PUM1 RIP-chip UGUAHAUA 619_19846595 Homo_sapiens ENSG00000162374 ELAVL4 RIP-chip CYCUCCYUCYCYC 619_19846595.1 Homo_sapiens ENSG00000162374 ELAVL4 RIP-chip KUUUGUUUKKUUU 619_19846595.2 Homo_sapiens ENSG00000162374 ELAVL4 RIP-chip UUUUUUUUUWAAA 714_14981256 Homo_sapiens ENSG00000066044 ELAVL1 RIP-chip KKNWWDNNNUKNNUUNUNNH 906_17437629 Homo_sapiens ENSG00000088247 KHSRP RIP-chip UAUUUAUw 906_17437629.1 Homo_sapiens ENSG00000088247 KHSRP RIP-chip UwUAUUUw 906_17437629.2 Homo_sapiens ENSG00000088247 KHSRP RIP-chip nUGUrUrU 906_17437629.3 Homo_sapiens ENSG00000088247 KHSRP RIP-chip CnsCyUCC 320_15607425 Homo_sapiens ENSG00000055917 PUM2 yeast three-hybrid screen GNNNNNNNNNNNUGUA 37_16537540 Homo_sapiens ENSG00000078328 A2BP1 SELEX UGCAUG 37_16537540.pwm 37_16537540.pfm 149_16041388 Homo_sapiens ENSG00000112531 QKI SELEX NACUAAY(N)(2-20)UAAY 149_16041388.pwm 149_16041388.pfm 243_7543047 Homo_sapiens ENSG00000136450 SFRS1 SELEX ACGCGCA 243_7543047.pwm 243_7543047.pfm 350_8846295 Homo_sapiens ENSG00000063046 EIF4B SELEX SUYGGAM 350_8846295.pwm 350_8846295.pfm 351_8846295 Homo_sapiens ENSG00000063046 EIF4B SELEX SUYGGAM 351_8846295.pwm 351_8846295.pfm 352_8846295 Homo_sapiens ENSG00000063046 EIF4B SELEX SUYGGAM 352_8846295.pwm 352_8846295.pfm 359_12507992 Homo_sapiens ENSG00000159217 IGF2BP1 SELEX AAGCACCCGUU 359_12507992.pwm 359_12507992.pfm 1213_8021254 Homo_sapiens ENSG00000122729 ACO1 SELEX CAGUGN 1213_8021254.pwm 1213_8021254.pfm 488_9001221 Homo_sapiens ENSG00000147140 NONO SELEX AGGGA 488_9001221.pwm 488_9001221.pfm 23_7510636 Homo_sapiens ENSG00000135486 HNRNPA1 SELEX UAGGGW 23_7510636.pwm 23_7510636.pfm 637_11098054 Homo_sapiens ENSG00000089280 FUS SELEX GGUG 637_11098054.pwm 637_11098054.pfm 661_1717938 Homo_sapiens ENSG00000077312 SNRPA SELEX AUUGCAC 661_1717938.pwm 661_1717938.pfm 662_1717938 Homo_sapiens ENSG00000077312 SNRPA SELEX AUUGCAC 662_1717938.pwm 662_1717938.pfm 663_1717938 Homo_sapiens ENSG00000077312 SNRPA SELEX AUUGCAC 663_1717938.pwm 663_1717938.pfm 669_20071745 Homo_sapiens ENSG00000152601 MBNL1 SELEX YYYGCUKY; YGCY 669_20071745.pwm 669_20071745.pfm 680_9789075 Homo_sapiens ENSG00000104967 NOVA2 SELEX GGGRGAGUCAUHSCY 680_9789075.pwm 680_9789075.pfm 682_10811881 Homo_sapiens ENSG00000104967 NOVA2 SELEX UCAY 682_10811881.pwm 682_10811881.pfm 783_7972035 Homo_sapiens ENSG00000107105 ELAVL2 SELEX RWUUUAUUUWR 783_7972035.pwm 783_7972035.pfm 784_7972035 Homo_sapiens ENSG00000107105 ELAVL2 SELEX RWUUUAUUUWR 784_7972035.pwm 784_7972035.pfm 782_8497264 Homo_sapiens ENSG00000107105 ELAVL2 SELEX MUYCUUUWUWUUY 782_8497264.pwm 782_8497264.pfm 797_17548433 Homo_sapiens ENSG00000111786 SFRS9 SELEX AGGAY 797_17548433.pwm 797_17548433.pfm 922_19282290 Homo_sapiens ENSG00000147274 RBMX SELEX CCM 922_19282290.pwm 922_19282290.pfm 969_20167602 Homo_sapiens ENSG00000083896 YTHDC1 SELEX KVVURC 969_20167602.pwm 969_20167602.pfm 1004_8676391 Homo_sapiens ENSG00000115053 NCL SELEX CCGAAAKCCCGAAGYAGG 1004_8676391.pwm 1004_8676391.pfm 1052_17318228 Homo_sapiens ENSG00000234414 RBMY1A1 SELEX CWCAA 1052_17318228.pwm 1052_17318228.pfm 1053_17318228 Homo_sapiens ENSG00000234414 RBMY1A1 SELEX CWCAA 1053_17318228.pwm 1053_17318228.pfm 1285_19304800 Homo_sapiens ENSG00000132485 ZRANB2 SELEX AGGUAA(N)(1-2)AGGUAA; AGGUAA(N)(6-10)AGGUAA 1285_19304800.pwm 1285_19304800.pfm 24_7908267 Homo_sapiens ENSG00000070756 PABPC1 SELEX AAAAA 24_7908267.pwm 24_7908267.pfm 221_12324455 Homo_sapiens ENSG00000128016 ZFP36 SELEX UUAUUUAWW 221_12324455.pwm 221_12324455.pfm 244_7543047 Homo_sapiens ENSG00000161547 SFRS2 SELEX GUUCGAGUA 244_7543047.pwm 244_7543047.pfm 242_7543047 Homo_sapiens ENSG00000136450 SFRS1 SELEX RGAAGAAC 242_7543047.pwm 242_7543047.pfm 950_7908267 Homo_sapiens ENSG00000070756 PABPC1 SELEX ACDAAYM 950_7908267.pwm 950_7908267.pfm 952_7543047 Homo_sapiens ENSG00000136450 SFRS1 SELEX AGGACAGAGC 952_7543047.pwm 952_7543047.pfm 954_10094314 Homo_sapiens ENSG00000115875 SFRS7 SELEX ACGAGAGAY 954_10094314.pwm 954_10094314.pfm 953_7543047 Homo_sapiens ENSG00000161547 SFRS2 SELEX AGSAGAGUA 953_7543047.pwm 953_7543047.pfm 951_12324455 Homo_sapiens ENSG00000128016 ZFP36 SELEX UUAUUUAWW 951_12324455.pwm 951_12324455.pfm 790_10094314 Homo_sapiens ENSG00000115875 SFRS7 SELEX AGACKACGAY 790_10094314.pwm 790_10094314.pfm 949_10094314 Homo_sapiens ENSG00000077312 SNRPA SELEX AGGAGAU 949_10094314.pwm 949_10094314.pfm 948_10094314 Homo_sapiens ENSG00000077312 SNRPA SELEX GAGCAGUAGKS 948_10094314.pwm 948_10094314.pfm 947_10094314 Homo_sapiens ENSG00000077312 SNRPA SELEX GGGUAUGCUG 947_10094314.pwm 947_10094314.pfm 946_10094314 Homo_sapiens ENSG00000077312 SNRPA SELEX GWUWCCUGCUA 946_10094314.pwm 946_10094314.pfm 791_10094314 Homo_sapiens ENSG00000161547 SFRS2 SELEX UGUUCSAGWU 791_10094314.pwm 791_10094314.pfm 685_18978773 Mus_musculus ENSMUSG00000030411 Nova2 CLIP-seq YCAY 329_11780640 Mus_musculus ENSMUSG00000020594 Pum2 SELEX UGUA 329_11780640.pwm 329_11780640.pfm 330_11780640 Mus_musculus ENSMUSG00000020594 Pum2 SELEX UGUANAUARNNNNBBBBSCCS 330_11780640.pwm 330_11780640.pfm 252_15703440 Saccharomyces_cerevisiae YDR432W Npl3 RIP-chip UAUAUAA 252_15703440.1 Saccharomyces_cerevisiae YDR432W Npl3 RIP-chip ACAUACA 251_15703440 Saccharomyces_cerevisiae YGL122C Nab2 RIP-chip AAAAAG 1148_15024427 Saccharomyces_cerevisiae YGL178W Mpt5 RIP-chip UGUAAYAWUA 1149_15024427 Saccharomyces_cerevisiae YLL013C Puf3 RIP-chip CHUGUAWAUA 1151_15024427 Saccharomyces_cerevisiae YGL014W Puf4 RIP-chip WHUGUAHAWUA 377_9199325 Saccharomyces_cerevisiae YGL044C Rna15 SELEX UGYGUAUUYUCC 377_9199325.pwm 377_9199325.pfm 376_9199325 Saccharomyces_cerevisiae YGL044C Rna15 SELEX UGYGUAUUYUCC 376_9199325.pwm 376_9199325.pfm 1123_20095591 Xenopus_laevis XB-GENE-6252591 gtf3a SELEX GGGUGGG 115_7499328 Xenopus_laevis XB-GENE-6252609 ybx2-a SELEX KAACAUCU 115_7499328.pwm 115_7499328.pfm 114_7499328 Xenopus_laevis XB-GENE-6252609 ybx2-a SELEX UAACAUC 114_7499328.pwm 114_7499328.pfm 130_11376140 Xenopus_laevis XB-GENE-6252609 ybx2-a SELEX GCCANACCAYCGC 130_11376140.pwm 130_11376140.pfm