Column Row oligo # ncRNA conventional tRNA nomenclature oligocovers use to normalize? Seq length start of coverage (RNA) end of coverage (RNA) Cy5 Cy3 average I log I Ratio 2 2 4517 U3b (snR17b) U3b yes 662 141 158 29.543863 263.636141 146.590002 2.166104351 0.102695 2 3 16978 YGR034W intron no 454 341 360 33.700442 308.92483 171.312636 2.233789398 -0.027172 2 4 3333 Thr3 ThrTGT_i tRNA yes 272 11 25 39.814831 308.691802 174.2533165 2.241181053 0.01334 2 5 8340 snoRNA cluster4 snR53 yes 638 486 505 28.594262 290.153666 159.373964 2.202417375 -0.07569 2 6 21200 YOL127W spliced yes 40 1 18 38.60572 309.397617 174.0016685 2.240553413 0.004143 2 7 1798 Leu8 LeuTAG_i tRNA yes 301 16 30 56.662533 347.1264 201.8944665 2.305124416 -0.213377 2 8 18206 YML024W intron no 498 421 438 29.300274 258.125576 143.712925 2.157495829 0.114029 2 9 4186 telomerase RNA 5_flank no 1501 30.891605 276.89498 153.8932925 2.187219691 0.106666 2 10 10076 RUF6 RUF6 yes 1251 226 242 36.487332 308.118521 172.3029265 2.236292654 0.010565 2 11 19634 RNA14 2.2 RNA14 2.2 yes 401 181 201 28.404614 285.731607 157.0681105 2.196088019 -0.065579 2 12 18535 YMR230W intron no 510 81 97 32.255321 316.331782 174.2935515 2.241281319 -0.103874 2 13 15542 YBR078W intron no 430 201 218 47.175006 362.625882 204.900444 2.311542899 -0.384894 2 14 10388 RUF7 3_flank no 700 34.600554 257.79955 146.200052 2.164947527 0.366575 2 15 7133 snR63 snR63 yes 455 171 188 39.030396 276.846295 157.9383455 2.198487584 0.30457 2 16 11320 "rRNA(18S,5.8S,25S)" 25S yes 7956 3486 3503 41711.43413 20526.39963 31118.91688 4.493024473 0.150892 2 17 7668 snoRNA cluster1 snR78 yes 1574 136 154 59.954902 283.931666 171.943284 2.235385217 0.319525 2 18 14460 MT_21S 21S_rRNA3 yes 4639 1111 1128 514.748994 617.753314 566.251154 2.7530091 0.478697 2 19 7249 snR65 snR65 yes 300 21 40 32.723081 285.064598 158.8938395 2.201107059 0.12322 2 20 5392 snR31 snR31 yes 425 26 42 58.799911 271.397024 165.0984675 2.217743042 0.431517 2 21 9592 RUF3 RUF3 yes 631 346 360 44.013941 255.344311 149.679126 2.175161239 0.552618 2 22 863 Glu2 GluTTC_i 3_flank no 272 31.253469 273.283137 152.268303 2.182609508 0.142245 2 23 18333 YML094W 3_exon no 183 161 178 31.30956 279.827923 155.5687415 2.191922338 0.111247 2 24 13596 MT_ATP8/AAP1 5_flank/AAP1 no 347 76 102 29.161081 293.983647 161.572364 2.208367079 -0.062653 2 25 17637 YJR094W 3_exon no 375 341 355 61.648882 276.712618 169.18075 2.228350946 0.394462 2 26 16884 YGL189C intron no 269 101 118 31.191564 256.643287 143.9174255 2.158113381 0.222819 2 27 1355 Ile3 IleTAT_ii 3_flank no 333 39.637925 264.64862 152.1432725 2.182252753 0.422322 2 28 12096 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7366 7388 30.885374 275.082359 152.9838665 2.184645633 0.115099 2 29 21077 YMR230W spliced yes 40 13 29 39.051171 312.819547 175.935359 2.245353132 -0.025542 2 30 107 Arg1 ArgACG_i 5_flank no 273 29.21409 285.434274 157.324182 2.196795482 -0.020532 2 31 9250 snR6 / U6 RNA 3_flank no 312 33.952586 294.837897 164.3952415 2.215889243 0.091257 2 32 1368 Leu1 LeuCAA_i 5_flank no 315 49.855364 328.703079 189.2792215 2.277102941 -0.114247 2 33 18746 YNL162W intron no 612 241 257 45.278271 324.748361 185.013316 2.267202987 -0.106419 2 34 19969 YBL072C spliced yes 40 9 26 57.177969 343.2631 200.2205345 2.301508616 -0.181847 2 35 11097 "rRNA(18S,5.8S,25S)" 18S yes 7956 2371 2386 70.437607 290.504213 180.47091 2.256407208 0.31454 2 36 21114 YNL096C spliced yes 40 9 27 30.126136 315.127402 172.626769 2.237108142 -0.147722 2 37 9847 RUF5-1 RUF5-1 yes 975 41 60 31.383721 316.297999 173.84086 2.240151862 -0.114953 2 38 13509 MT_COX1 intronic no 13084 11836 11857 27.596552 277.448963 152.5227575 2.183334648 -0.072528 2 39 21639 copy of SH8349 no 638 27.821332 260.524001 144.1726665 2.158882931 0.012046 2 40 9821 RUF5-1 5_flank no 975 32.119029 268.990242 150.5546355 2.177694132 0.205776 2 41 10219 RUF6 RUF6 yes 1251 941 958 32.221918 278.028845 155.1253815 2.190682863 0.153116 2 42 606 Gln1 GlnCTG tRNA/3_flank no 272 40.608588 322.74789 181.678239 2.259302912 -0.107534 2 43 17399 YIL069C intron no 509 321 340 40.599794 420.68258 230.641187 2.362936864 -0.813868 2 44 5618 snR34 snR34 yes 750 11 27 32.243554 299.524866 165.88421 2.219805049 0.016701 2 45 7623 snR189 snR189/3_flank no 389 30.217302 261.509345 145.8633235 2.163946105 0.148501 2 46 11953 "rRNA(18S,5.8S,25S)" 25S yes 7956 6651 6666 1329.827629 1442.630837 1386.229233 3.141835053 0.248737 2 47 15172 MT_COX3 5_flank no 1010 1 23 37.032393 341.306514 189.1694535 2.276851009 -0.273906 2 48 946 Gly1 GlyCCC_i 5_flank no 272 31.113125 269.764629 150.438877 2.177360083 0.152508 2 49 21355 YPR187W spliced yes 40 9 21 249.843687 365.798142 307.8209145 2.488298124 0.680398 2 50 20129 YDL082W spliced yes 40 13 28 38.843665 273.116725 155.980195 2.193069459 0.336103 2 51 7739 snoRNA cluster1 intergenic no 1574 491 508 30.356408 300.127736 165.242072 2.218120632 -0.049979 2 52 20318 YER044C-A spliced yes 40 13 30 32.837949 300.718576 166.7782625 2.222139445 0.028452 2 53 13740 MT_COB exon1 yes 7308 286 305 30.6199 288.500343 159.5601215 2.202924358 0.031794 2 54 5523 snR33 5_flank no 383 37.270958 339.889218 188.580088 2.275495834 -0.261692 2 55 14167 MT_COB intronic no 7308 6691 6708 41.5336 332.305663 186.9196315 2.271654916 -0.184376 2 56 17335 YIL018W intron no 500 101 120 30.116197 317.195436 173.6558165 2.239689334 -0.16011 2 57 2428 Phe5 PheGAA_v 5_flank no 291 29.951251 301.799778 165.8755145 2.219782283 -0.074238 2 58 13198 MT_COX1 exon4 yes 13084 7171 7192 29.833752 329.47416 179.653956 2.254436785 -0.239876 2 59 13106 MT_COX1 ai3 no 13084 5791 5815 29.742225 320.816035 175.27913 2.243730209 -0.194054 2 60 4046 SRP SRP yes 875 121 140 29.639483 302.433723 166.036603 2.220203839 -0.089028 2 61 8251 snoRNA cluster4 5_flank no 638 41 58 31.665964 294.16709 162.916527 2.211965143 0.031058 2 62 20442 YGL087C spliced yes 40 17 36 29.287063 312.767554 171.0273085 2.233065461 -0.163379 2 63 7991 snoRNA cluster 2 intergenic no 739 191 210 31.172294 304.471288 167.821791 2.224848352 -0.048739 2 64 12123 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7501 7520 30.87261 300.623552 165.748081 2.219448509 -0.035411 2 65 14399 MT_21S 21S_rRNA3 yes 4639 196 216 28.482434 318.047694 173.265064 2.238711003 -0.223292 2 66 19159 YPL075W intron no 851 701 718 42.968963 306.606025 174.787494 2.242510356 0.041249 2 67 9482 RUF2 RUF2 yes 468 251 265 103.216702 349.213488 226.215095 2.354521581 0.076779 2 68 12084 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7306 7324 40.600575 280.894253 160.747414 2.206143995 0.278789 2 69 337 Arg5 ArgTCT tRNA yes 272 21 35 34.397089 261.836419 148.116754 2.170604186 0.331809 2 70 6760 snR50 5_flank no 290 55.784823 322.350901 189.067862 2.276617713 -0.030385 2 71 19973 YBL087C spliced yes 40 1 19 32.740074 301.708257 167.2241655 2.223299037 0.019273 2 72 15102 MT_COX 2; ORF1 ORF2exon2 yes 2427 2131 2150 35.182363 328.255525 181.718944 2.259400204 -0.169647 2 73 17209 YHR039C intron no 262 121 138 42.021972 301.043735 171.5328535 2.234347312 0.088364 2 74 6383 snR43 snR43 yes 409 156 175 32.581539 314.226996 173.4042675 2.239059781 -0.083209 2 75 7696 snoRNA cluster1 intergenic no 1574 276 292 88.177178 321.494131 204.8356545 2.311405554 0.173362 2 76 8048 snoRNA cluster 2 intergenic no 739 476 495 31.994553 328.01117 180.0028615 2.255279409 -0.196836 2 77 29 Ala1 AlaAGC tRNA yes 273 41 53 667.520637 407.859629 537.690133 2.730532067 1.497529 2 78 1056 Gly3 GlyGCC tRNA yes 271 16 34 32.356774 311.377491 171.8671325 2.235192831 -0.063563 2 79 18475 YMR143W intron no 644 501 522 30.202477 358.492688 194.3475825 2.288579143 -0.440307 2 80 20519 YGR034W spliced yes 40 9 25 34.636086 292.27547 163.455778 2.213400277 0.121082 2 81 15188 MT_COX3 cox3 no 1010 241 261 32.246537 358.463103 195.35482 2.290824131 -0.423576 2 82 12572 MT_15S 15S yes 1848 331 348 31.976004 307.442443 169.7092235 2.229705446 -0.040037 2 83 18987 YOR096W intron no 501 421 440 35.994988 310.899628 173.447308 2.239167564 -0.015782 2 84 18375 YMR116C 5_exon no 373 1 17 37.721804 284.650173 161.1859885 2.207327287 0.22175 2 85 15482 YBL092W 5_exon no 433 21 37 298.617248 401.154047 349.8856475 2.543926128 0.665326 2 86 2958 Ser1 SerAGA_i tRNA yes 283 21 38 43.223081 359.096035 201.159558 2.303540673 -0.38323 2 87 11 Ala1 AlaAGC 5_flank no 273 32.275857 286.955363 159.61561 2.203075362 0.096679 2 88 12806 MT_COX1 ai1 no 13084 1291 1315 29.887856 303.803279 166.8455675 2.222314673 -0.088633 2 89 16105 YDR064W 5_exon no 639 21 37 73.406353 333.979525 203.692939 2.308975974 -0.010488 2 90 10993 "rRNA(18S,5.8S,25S)" 18S yes 7956 1851 1871 21627.68679 8756.506261 15192.09652 4.181617711 0.762582 2 91 16027 YDL191W 5_exon no 591 1 18 36.955939 275.006764 155.9813515 2.193072679 0.298432 2 92 9621 RUF3 3_flank no 631 33.599434 342.85597 188.227702 2.27468354 -0.295444 2 93 1929 Lys1 LysCTT_i 3_flank no 272 40.222811 317.831567 179.027189 2.252918993 -0.066789 2 94 11340 "rRNA(18S,5.8S,25S)" 25S yes 7956 3586 3603 25873.7737 7725.223963 16799.49883 4.225296326 1.190048 2 95 6282 snR42 snR42 yes 551 191 209 37.909068 350.172167 194.0406175 2.287892648 -0.34103 2 96 239 Arg3 ArgCCG tRNA yes 272 51 63 959.533933 468.876182 714.2050575 2.853822921 1.682193 2 97 4589 U3b (snR17b) 3_flank no 662 30.147968 295.580219 162.8640935 2.211825346 -0.029063 2 98 11949 "rRNA(18S,5.8S,25S)" 25S yes 7956 6631 6644 36.105795 244.748705 140.42725 2.147451391 0.506691 2 99 11609 "rRNA(18S,5.8S,25S)" 25S yes 7956 4931 4947 74.176275 251.721184 162.9487295 2.212050979 0.69532 2 100 15539 YBR078W intron no 430 141 160 36.380627 400.099086 218.2398565 2.338934067 -0.710977 2 101 5604 snR34 5_flank no 750 32.544681 304.497178 168.5209295 2.226653846 -0.005945 2 102 3775 Val4 ValTAC 3_flank no 274 34.664792 358.167148 196.41597 2.293176796 -0.414665 2 103 11029 "rRNA(18S,5.8S,25S)" 18S yes 7956 2031 2046 56446.06808 11902.91367 34174.49087 4.533702053 1.426133 2 104 11555 "rRNA(18S,5.8S,25S)" 25S yes 7956 4661 4674 707.633359 936.592381 822.11287 2.914931447 0.151497 3 2 11895 "rRNA(18S,5.8S,25S)" 25S yes 7956 6361 6379 85.437075 408.444983 246.941029 2.392593254 -0.396149 3 3 20327 YER074W spliced yes 40 1 20 36.048503 396.351065 216.199784 2.334855256 -0.687983 3 4 21612 copy of SH7093 no 455 31.341098 372.206076 201.773587 2.304864315 -0.531295 3 5 11535 "rRNA(18S,5.8S,25S)" 25S yes 7956 4561 4579 2048.260162 4118.832475 3083.546319 3.489050476 -0.864731 3 6 7690 snoRNA cluster1 intergenic no 1574 246 263 32.589026 308.109416 170.349221 2.231340152 -0.034526 3 7 10526 RUF8 RUF8 yes 1151 556 570 69.52305 311.819395 190.6712225 2.280285151 0.133375 3 8 17961 YLR185W intron no 459 201 218 45.817642 405.592241 225.7049415 2.353541067 -0.682781 3 9 1752 Leu7 LeuTAA tRNA yes 284 e22 57 34.126597 329.212641 181.669619 2.259282305 -0.180564 3 10 2534 Pro2 ProTGG_i 5_flank no 303 38.688813 336.25469 187.4717515 2.272935837 -0.226886 3 11 9351 RUF1 RUF1 yes 750 331 348 32.509193 298.798601 165.653897 2.219201657 0.029738 3 12 8558 snR19 / U1 RNA U1 yes 868 286 305 30.479455 308.630169 169.554812 2.22931012 -0.097189 3 13 11789 "rRNA(18S,5.8S,25S)" 25S yes 7956 5831 5846 32006.66877 31395.36561 31701.01719 4.501073198 -0.87895 3 14 21621 copy of SH7516 no 284 52.74644 338.883017 195.8147285 2.291845355 -0.176473 3 15 7103 snR63 snR63 yes 455 21 38 31.217906 307.904773 169.5613395 2.229326839 -0.067859 3 16 19216 YPL081W intron no 601 481 497 35.748461 299.380737 167.564599 2.224182272 0.074811 3 17 5206 snR13 3_flank no 324 30.105555 328.761401 179.433478 2.253903475 -0.22768 3 18 6469 snR45 3_flank no 372 38.917803 325.174946 182.0463745 2.260182034 -0.134089 3 19 10358 RUF7 RUF7 yes 700 401 420 39.400307 337.123019 188.261663 2.274761891 -0.231365 3 20 21573 copy of SH5388 no 425 35.501339 336.916671 186.209005 2.270000679 -0.24159 3 21 21197 YOL121C spliced yes 40 13 28 33.598842 335.360343 184.4795925 2.265948331 -0.233683 3 22 19638 RNA14 2.2 RNA14 2.2 yes 401 261 278 33.745517 345.273874 189.5096955 2.277631434 -0.314683 3 23 12033 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7051 7074 35.981439 352.718379 194.349909 2.288584342 -0.368335 3 24 2339 Phe3 PheGAA_iii tRNA yes 291 21 33 64.40558 352.698537 208.5520585 2.319214481 -0.202484 3 25 7977 snoRNA cluster 2 snR57 yes 739 121 141 33.792352 312.21863 173.005491 2.238059887 -0.052255 3 26 16400 YER056C intron no 497 61 78 38.046045 317.617092 177.8315685 2.250008859 -0.070449 3 27 6343 snR43 5_flank no 409 42.229335 325.737744 183.9835395 2.26477897 -0.127253 3 28 10474 RUF8 RUF8 yes 1151 296 315 31.263198 303.541975 167.4025865 2.223762164 -0.04007 3 29 1961 Lys2 LysCTT_ii tRNA yes 273 6 18 41.62406 281.095473 161.3597665 2.207795257 0.279061 3 30 12707 MT_ORF 8 ORF8 yes 491 271 295 29.601847 305.374222 167.4880345 2.223983786 -0.10817 3 31 10555 RUF8 RUF8 yes 1151 701 718 38.553842 270.141269 154.3475555 2.188499756 0.360074 3 32 4763 snR5 5_flank/snR5 no 404 36.016943 296.007614 166.0122785 2.22014021 0.105911 3 33 12401 5S rRNA NTS2 no 1420 961 977 66.362168 314.853943 190.6080555 2.280141251 0.089984 3 34 6709 snR49 snR49 yes 365 71 88 29.377217 272.52729 150.9522535 2.178839601 0.049738 3 35 13203 MT_COX1 exon4 yes 13084 7246 7265 33.338491 300.087694 166.7130925 2.221969708 0.040083 3 36 20610 YHR079C-A spliced yes 40 5 25 39.475507 369.839217 204.657362 2.311027372 -0.483322 3 37 6306 snR42 snR42 yes 551 311 325 56.033885 306.741107 181.387496 2.258607346 0.099429 3 38 5560 snR33 snR33 yes 383 86 100 130.335065 359.929654 245.1323595 2.389400646 0.171452 3 39 10113 RUF6 RUF6 yes 1251 411 432 36.030132 340.20717 188.118651 2.274431856 -0.267397 3 40 21218 YOR122C spliced yes 40 17 34 38.243382 305.35793 171.800656 2.235024818 0.040004 3 41 1794 Leu8 LeuTAG_i 5_flank/tRNA no 301 292.928749 432.140485 362.534617 2.559349482 0.503814 3 42 1430 Leu2 LeuCAA_ii 5_flank no 314 32.155065 323.531581 177.843323 2.250037565 -0.160781 3 43 19239 YPL090C intron no 494 341 360 30.091584 310.179481 170.1355325 2.230795025 -0.119782 3 44 3170 Ser5 SerTGA 5_flank no 282 36.295407 327.443352 181.8693795 2.259759585 -0.159882 3 45 18122 YLR388W intron no 258 81 97 32.226362 277.642686 154.934524 2.190148202 0.155819 3 46 19219 YPL081W intron/exon no 601 541 557 68.136674 301.744211 184.9404425 2.267031892 0.206702 3 47 5398 snR31 snR31 yes 425 56 70 55.987292 281.651266 168.819279 2.227422041 0.321577 3 48 9670 RUF4 RUF4 yes 988 126 147 31.038965 300.408426 165.7236955 2.219384609 -0.028481 3 49 21403 Pro8 spliced yes 40 17 29 236.34929 452.431313 344.3903015 2.537050913 0.211216 3 50 6673 snR48 3_flank no 313 33.177943 302.691869 167.934906 2.225140976 0.01673 3 51 17401 YIL069C intron no 509 361 380 32.499666 300.118585 166.3091255 2.22091608 0.021316 3 52 14137 MT_COB intronic no 7308 6241 6265 30.502956 327.41292 178.957938 2.252750967 -0.212093 3 53 12787 MT_COX1 ai1 no 13084 1006 1026 30.541036 320.785097 175.6630665 2.24468046 -0.166201 3 54 19860 Negative Control no 60 NA #VALUE! 37.129146 284.441471 160.7853085 2.206246363 0.217005 3 55 11408 "rRNA(18S,5.8S,25S)" 25S yes 7956 3926 3941 41.335546 297.277217 169.3063815 2.228673328 0.122039 3 56 711 Gln3 GlnTTG_ii 3_flank no 272 32.2047 302.92992 167.56731 2.224189298 -0.005371 3 57 19266 YPL143W intron no 625 201 218 36.395592 308.565811 172.4807015 2.23674051 0.006282 3 58 14944 MT_Met 5_flank no 276 31 53 29.69905 326.76365 178.23135 2.250984097 -0.229392 3 59 1453 Leu2 LeuCAA_ii tRNA/intron no 314 35 i15 36.120007 273.838537 154.979272 2.190273617 0.299479 3 60 3838 RNaseP RNaseP yes 569 156 173 40.338559 315.463501 177.90103 2.250178463 -0.045866 3 61 20819 YKL190W spliced yes 40 21 40 29.348705 324.775838 177.0622715 2.248126031 -0.230549 3 62 4719 snR4 snR4 yes 386 131 145 52.8206 289.048607 170.9346035 2.232829989 0.23884 3 63 18978 YOR096W intron no 501 241 258 33.137553 316.388712 174.7631325 2.242449821 -0.093146 3 64 13506 MT_COX1 intronic no 13084 11791 11807 54.048229 303.172383 178.610306 2.251906515 0.119016 3 65 6344 snR43 5_flank no 409 36.754748 284.978038 160.866393 2.206465324 0.208152 3 66 11903 "rRNA(18S,5.8S,25S)" 25S yes 7956 6401 6414 129.794951 305.269197 217.532074 2.337523301 0.526947 3 67 21429 Tyr1_2 spliced yes 40 9 26 30.208783 303.198084 166.7034335 2.221944545 -0.073809 3 68 16217 YDR381W intron no 866 241 260 30.225659 302.903594 166.5646265 2.221582775 -0.071437 3 69 12757 MT_COX1 ai1 no 13084 556 572 75.142943 321.858339 198.500641 2.297761914 0.089569 3 70 19768 Negative Control no 60 NA #VALUE! 49.477596 327.652998 188.565297 2.275461769 -0.108142 3 71 6727 snR49 snR49/3_flank no 365 30.774313 313.495526 172.1349195 2.235868981 -0.115934 3 72 20983 YML056C spliced yes 40 25 39 78.907482 319.556396 199.231939 2.299358962 0.130572 3 73 18076 YLR344W intron no 547 281 303 29.155685 325.384537 177.270111 2.248635517 -0.240887 3 74 10812 "rRNA(18S,5.8S,25S)" 18S yes 7956 946 966 76.968044 313.264501 195.1162725 2.290293491 0.166167 3 75 1107 Gly4 GlyTCC tRNA yes 272 11 27 36.097197 274.754684 155.4259405 2.191523504 0.290963 3 76 4988 snR10 5_flank no 445 33.019859 294.785605 163.902732 2.214586193 0.070909 3 77 13392 MT_COX1 intronic no 13084 10081 10109 34.289257 349.88008 192.0846685 2.283492702 -0.350252 3 78 6890 snR56 snR56/3_flank no 288 34.425122 273.816491 154.1208065 2.187861273 0.250289 3 79 17041 YGR183C intron no 313 261 280 34.493487 283.825775 159.159631 2.201832924 0.186259 3 80 21834 copy of SH16599 no 421 32.25379 292.301944 162.277867 2.210259291 0.061975 3 81 6366 snR43 snR43 yes 409 71 87 40.949709 289.387365 165.168537 2.217927322 0.196341 3 82 2613 Pro3 ProTGG_ii tRNA yes 303 16 33 38.458493 267.670005 153.064249 2.184873765 0.38176 3 83 13871 MT_COB intronic no 7308 2251 2267 78.144599 315.79476 196.9696795 2.294399378 0.15425 3 84 6539 snR46 snR46/3_flank no 397 33.385989 282.965434 158.1757115 2.199139797 0.157771 3 85 5837 snR35 snR35 yes 740 371 385 46.900129 296.151138 171.5256335 2.234329032 0.14888 3 86 725 Gln3 GlnTTG_ii 3_flank no 272 38.993571 274.703277 156.848424 2.195480159 0.323383 3 87 14578 MT_21S intronic no 4639 2881 2898 32.331019 330.507349 181.419184 2.258683209 -0.21124 3 88 1342 Ile3 IleTAT_ii intron/tRNA no 333 i54 45 71.544611 300.39378 185.9691955 2.269441012 0.237453 3 89 21932 copy of SH21372 no 40 31.60598 294.09507 162.850525 2.211789163 0.029529 3 90 20282 YDR450W spliced yes 40 21 38 33.221754 287.51047 160.366112 2.2051126 0.123283 3 91 15569 YBR084C intron no 606 141 157 36.78384 309.891643 173.3377415 2.238893134 -0.004729 3 92 13309 MT_COX1 ai5a no 13084 8836 8857 30.486834 332.493597 181.4902155 2.258853216 -0.250366 3 93 2936 Ser1 SerAGA_i 5_flank no 283 32.163603 365.754445 198.959024 2.298763642 -0.480074 3 94 14919 MT_Tyr tRNA/3_flank no 284 181 205 33.925103 337.984299 185.954701 2.269407162 -0.254577 3 95 20302 YER003C spliced yes 40 1 17 35.800342 280.318927 158.0596345 2.198820973 0.237995 3 96 3256 Thr1 ThrAGT 3_flank no 273 31.990304 291.698692 161.844498 2.20909794 0.057214 3 97 8484 snR19 / U1 RNA 5_flank no 868 34.063293 327.791168 180.9272305 2.257503935 -0.169235 3 98 8929 snR17a / U3a 5_flank no 690 30.351788 309.837472 170.09463 2.230690603 -0.10876 3 99 11779 "rRNA(18S,5.8S,25S)" 25S yes 7956 5781 5799 34.459915 313.515771 173.987843 2.240518904 -0.054401 3 100 19848 Negative Control no 60 NA #VALUE! 34.660414 296.236856 165.448635 2.218663188 0.088102 3 101 1911 Lys1 LysCTT_i tRNA yes 272 11 23 38.838366 275.002948 156.920657 2.195680118 0.319038 3 102 8875 LSR1 / U2 RNA U2 yes 1375 1016 1032 149.776812 416.498904 283.137858 2.451997942 -0.027648 3 103 5859 snR35 snR35 yes 740 481 497 33.109581 274.37665 153.7431155 2.186795678 0.20584 3 104 5371 snR31 5_flank no 425 30.139521 347.562565 188.851043 2.276119388 -0.36465 4 2 15802 YDL061C intron no 509 181 196 34.19132 400.254602 217.222961 2.336905729 -0.722399 4 3 19137 YPL075W intron no 851 261 278 47.195673 502.387574 274.7916235 2.43900349 -1.204829 4 4 19173 YPL079W intron no 521 141 158 31.513551 475.715021 253.614286 2.404173714 -1.203215 4 5 15762 YCR031C intron no 407 321 337 31.162256 355.556284 193.35927 2.286364998 -0.407028 4 6 6268 snR42 snR42 yes 551 121 143 32.843321 326.505018 179.6741695 2.254485646 -0.174621 4 7 17096 YHL001W intron no 498 301 319 34.418205 421.619875 228.01904 2.357971113 -0.862899 4 8 3391 Thr4 ThrTGT_ii tRNA yes 272 41 57 37.96412 455.186776 246.575448 2.391949831 -1.037846 4 9 11386 "rRNA(18S,5.8S,25S)" 25S yes 7956 3816 3834 25781.48833 36906.17669 31343.83251 4.496152098 -1.412478 4 10 4769 snR5 snR5 yes 404 16 31 34.968292 326.141864 180.555078 2.256609707 -0.152155 4 11 1855 Leu9 LeuTAG_ii tRNA yes 301 16 30 60.458867 444.323392 252.3911295 2.402074087 -0.789345 4 12 1385 Leu1 LeuCAA_i 5_flank/tRNA no 315 64.259575 405.424068 234.8418215 2.37077544 -0.540262 4 13 15796 YDL061C intron no 509 61 75 55.468078 430.196014 242.832046 2.385305999 -0.754114 4 14 21099 YNL044W spliced yes 40 21 37 30.989174 334.454079 182.7216265 2.261789952 -0.258128 4 15 18000 YLR287C intron no 530 181 202 31.377965 384.325987 207.851976 2.317754158 -0.62072 4 16 3133 Ser4 SerGCT tRNA yes 301 52 64 34.911589 333.728025 184.319807 2.265572007 -0.21655 4 17 14920 MT_Tyr 3_flank no 284 196 222 28.235207 333.383196 180.8092015 2.257220528 -0.319098 4 18 13382 MT_COX1 exon5b yes 13084 9931 9949 28.664804 297.17285 162.918827 2.211971275 -0.103691 4 19 6496 snR46 5_flank no 397 33.288861 303.045887 168.167374 2.225741743 0.015223 4 20 13885 MT_COB intronic no 7308 2461 2479 40.092311 345.377171 192.734741 2.284960005 -0.295235 4 21 10125 RUF6 RUF6 yes 1251 471 487 36.057167 333.41679 184.7369785 2.266553836 -0.210995 4 22 13460 MT_COX1 intronic no 13084 11101 11123 29.716026 381.031836 205.373931 2.312545316 -0.601637 4 23 14509 MT_21S 21S_rRNA3 yes 4639 1846 1867 29.795033 401.093292 215.4441625 2.333334731 -0.744762 4 24 17505 YJL136C intron no 560 61 77 42.931783 391.494605 217.213194 2.336886202 -0.611153 4 25 4372 telomerase RNA telomerase yes 1501 896 910 74.812686 424.942362 249.877524 2.397727194 -0.566855 4 26 5706 snR34 snR34 yes 750 451 473 31.946465 384.193512 208.0699885 2.318209443 -0.618117 4 27 9361 RUF1 RUF1 yes 750 381 397 34.012631 320.907663 177.460147 2.249100837 -0.117402 4 28 10939 "rRNA(18S,5.8S,25S)" 18S yes 7956 1581 1596 62.096705 324.781277 193.438991 2.286544018 -0.012454 4 29 7615 snR189 snR189 yes 389 146 166 29.263289 335.517146 182.3902175 2.261001541 -0.2935 4 30 8646 snR19 / U1 RNA 3_flank no 868 31.061241 352.099754 191.5804975 2.282351297 -0.38423 4 31 21096 YNL044W spliced yes 40 9 21 32.770807 279.190447 155.980627 2.193070662 0.163078 4 32 9907 RUF5-1 RUF5-1 yes 975 341 361 30.303892 302.354249 166.3290705 2.220968161 -0.065395 4 33 19346 YPL249C intron no 337 61 78 32.032471 291.659477 161.845974 2.209101901 0.058837 4 34 14016 MT_COB exon4 yes 7308 4426 4442 33.831031 272.078984 152.9550075 2.1845637 0.243832 4 35 19008 YOR182C exon/intron no 511 41 60 29.658323 318.917475 174.287899 2.241267235 -0.186076 4 36 14925 MT_Asn 5_flank no 271 1 23 31.670676 290.919311 161.2949935 2.207620887 0.051654 4 37 20411 YFR032C-A spliced yes 40 13 32 37.831651 357.525448 197.6785495 2.295959546 -0.398324 4 38 8830 LSR1 / U2 RNA U2 yes 1375 791 808 31.831922 279.238991 155.5354565 2.191829408 0.132404 4 39 13961 MT_COB bi3 no 7308 3601 3625 31.928222 302.6629 167.295561 2.223484418 -0.012751 4 40 18012 YLR287C intron no 530 421 442 31.998939 318.200238 175.0995885 2.243285125 -0.121733 4 41 4992 snR10 5_flank/snR10 no 445 32.035181 312.83046 172.4328205 2.236619932 -0.079204 4 42 10091 RUF6 RUF6 yes 1251 301 322 29.994896 332.418005 181.2064505 2.258173653 -0.25654 4 43 2 Ala1 AlaAGC 5_flank no 273 75.257731 327.023231 201.140481 2.303499484 0.052123 4 44 15488 YBL092W intron no 433 141 158 38.212204 330.411585 184.3118945 2.265553363 -0.180397 4 45 1016 Gly2 GlyCCC_ii tRNA/3_flank no 272 32.122619 291.883826 162.0032225 2.209523653 0.060356 4 46 9415 RUF2 5_flank no 468 30.231613 313.109851 171.670732 2.234696259 -0.132246 4 47 5243 snR30 snR30 yes 801 66 83 30.520263 263.020354 146.7703085 2.166638207 0.15633 4 48 12113 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7451 7469 3091.114694 2004.542004 2547.828349 3.406170166 0.824882 4 49 19480 ADH1 ADH1 yes 400 301 315 37.902165 271.281487 154.591826 2.189186527 0.342606 4 50 10237 RUF6 RUF6 yes 1251 1031 1045 36.336794 289.726155 163.0314745 2.212271456 0.16258 4 51 19570 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 101 118 32.392305 303.984203 168.188254 2.225795662 -0.005702 4 52 9805 RUF4 3_flank no 988 37.101887 284.043298 160.5725925 2.205671419 0.220163 4 53 15036 MT_COX 2; ORF1 ORF1exon1 yes 2427 1141 1166 28.240491 323.097332 175.6689115 2.24469491 -0.261203 4 54 5305 snR30 snR30 yes 801 376 393 30.351653 296.491163 163.421408 2.213308948 -0.027697 4 55 15887 YDL082W intron no 465 281 298 34.557523 287.227801 160.892662 2.206536237 0.163195 4 56 2012 Lys3 LysTTT_i tRNA yes 296 6 22 47.501716 301.397385 174.4495505 2.241669855 0.10253 4 57 16966 YGR034W intron no 454 101 122 34.09032 303.640842 168.865581 2.227541139 0.020227 4 58 17698 YKL006W 3_exon no 498 461 475 64.510226 276.586348 170.548287 2.231847362 0.409106 4 59 4536 U3b (snR17b) U3b yes 662 236 251 74.038087 297.357315 185.697701 2.268806527 0.276871 4 60 6239 snR42 5_flank no 551 29.384832 311.180865 170.2828485 2.231170906 -0.150534 4 61 18589 YNL050C intron/exon no 191 121 142 29.225966 307.305944 168.265955 2.225996255 -0.133124 4 62 11336 "rRNA(18S,5.8S,25S)" 25S yes 7956 3566 3579 41.774437 286.200355 163.987396 2.21481047 0.229103 4 63 14520 MT_21S 21S_rRNA3 yes 4639 2011 2029 37.182588 294.521396 165.851992 2.219720692 0.131539 4 64 2410 Phe4 PheGAA_iv 3_flank no 291 32.671532 315.887849 174.2796905 2.24124678 -0.095095 4 65 12635 MT_15S 15S yes 1848 1276 1304 28.289823 331.381461 179.835642 2.25487577 -0.305992 4 66 11415 "rRNA(18S,5.8S,25S)" 25S yes 7956 3961 3980 86.951962 319.444335 203.1981485 2.307919746 0.180802 4 67 5881 snR35 3_flank no 740 34.324022 282.410046 158.367034 2.199664783 0.190323 4 68 15219 MT_COX3 cox3 no 1010 706 723 36.488456 308.892673 172.6905645 2.237268609 0.003557 4 69 16798 YGL137W exon/intron no 300 41 59 32.52222 335.805486 184.163853 2.265204393 -0.248101 4 70 1847 Leu9 LeuTAG_ii 5_flank no 301 34.85612 304.388936 169.622528 2.229483532 0.023344 4 71 13012 MT_COX1 ai2 no 13084 4381 4398 33.024301 305.080421 169.052361 2.228021241 -0.004617 4 72 13936 MT_COB bi3 no 7308 3226 3248 31.158116 321.910478 176.534297 2.246829092 -0.161408 4 73 21714 copy of SH11499 no 7956 73.414292 282.300654 177.857473 2.250072118 0.401743 4 74 18946 YOL127W intron no 514 101 117 33.713595 296.767606 165.2406005 2.218116765 0.07221 4 75 14638 MT_21S Sce1 no 4639 3781 3802 31.707816 312.016224 171.86202 2.235179912 -0.077016 4 76 13869 MT_COB intronic no 7308 2221 2237 66.932543 312.518656 189.7255995 2.278125934 0.111932 4 77 16044 YDL191W intron no 591 341 355 47.284111 280.794213 164.039162 2.214947542 0.296099 4 78 7109 snR63 snR63 yes 455 51 70 32.040037 330.911973 181.476005 2.25881921 -0.218007 4 79 17456 YIL148W intron no 534 221 237 33.176645 278.592028 155.8843365 2.192802479 0.179881 4 80 2939 Ser1 SerAGA_i 5_flank no 283 29.864978 324.475539 177.1702585 2.248390819 -0.210637 4 81 13043 MT_COX1 ai2 no 13084 4846 4865 36.294549 286.281219 161.287884 2.207601744 0.191659 4 82 14729 MT_Cys; His intergenic/tRNAhis no 456 256 282 29.563927 332.71838 181.1411535 2.258017129 -0.267404 4 83 11438 "rRNA(18S,5.8S,25S)" 25S yes 7956 4076 4091 88.35172 340.397961 214.3748405 2.331173814 0.040438 4 84 17472 YJL001W 5_exon no 216 21 35 79.213918 327.67553 203.444724 2.308446432 0.072271 4 85 6222 snR40 3_flank no 297 32.980903 315.029751 174.005327 2.240562544 -0.08447 4 86 3824 RNaseP RNaseP yes 569 86 100 73.608442 326.373002 199.990722 2.301009848 0.046116 4 87 16180 YDR305C 3_exon no 189 161 178 34.372395 318.171142 176.2717685 2.246182762 -0.091881 4 88 17564 YJL189W intron no 486 281 299 30.897015 280.056052 155.4765335 2.191664849 0.091823 4 89 14688 MT_21S 21S_rRNA4/3_flank no 4639 4531 4550 31.497724 301.554127 166.5259255 2.221481856 -0.020169 4 90 19753 Negative Control no 60 NA #VALUE! 41.027492 318.022048 179.52477 2.254124379 -0.065611 4 91 9298 RUF1 RUF1 yes 750 66 83 32.586742 286.597053 159.5918975 2.203010838 0.108989 4 92 11162 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2696 2719 28.320932 317.832761 173.0768465 2.238238974 -0.227985 4 93 19872 Negative Control no 60 NA #VALUE! 47.339084 282.054729 164.6969065 2.216685442 0.283978 4 94 18696 YNL130C 5_exon no 541 1 18 36.53672 313.926013 175.2313665 2.243611848 -0.041485 4 95 21084 YMR292W spliced yes 40 13 29 39.406181 322.827157 181.116669 2.257958422 -0.112488 4 96 18529 YMR225C 3_exon no 247 201 218 33.790741 288.700532 161.2456365 2.207487971 0.133411 4 97 5069 snR11 5_flank no 458 30.16531 326.535728 178.350519 2.251274377 -0.211841 4 98 19237 YPL090C intron no 494 301 320 32.37149 321.45756 176.914525 2.247763491 -0.14211 4 99 13537 MT_COX1 intronic no 13084 12256 12277 34.626393 359.155124 196.8907585 2.294225332 -0.422463 4 100 11395 "rRNA(18S,5.8S,25S)" 25S yes 7956 3861 3877 43263.89049 10472.511 26868.20074 4.429238584 1.312999 4 101 6596 snR47 snR47/3_flank no 299 31.150883 290.11326 160.6320715 2.20583226 0.039482 4 102 20212 YDR064W spliced yes 40 1 15 45.495925 309.821864 177.6588945 2.249586955 0.020767 4 103 12925 MT_COX1 ai2 no 13084 3076 3092 67.499877 378.711042 223.1054595 2.348510198 -0.352821 4 104 3502 Tyr1 TyrGTA_i intron/tRNA no 289 i12 51 35.641164 305.64201 170.641587 2.232084881 0.022414 5 2 14157 MT_COB intronic no 7308 6541 6559 32.004365 508.09298 270.0486725 2.431442047 -1.37316 5 3 10498 RUF8 RUF8 yes 1151 416 435 30.769222 368.756967 199.7630945 2.300515257 -0.506964 5 4 6237 snR42 5_flank no 551 29.47857 314.170014 171.824292 2.235084563 -0.16481 5 5 19511 ACT1 ACT1 yes 401 121 139 29.199983 278.92507 154.0625265 2.187697016 0.009436 5 6 21270 YPL090C spliced yes 40 1 18 36.234644 273.096053 154.6653485 2.189393024 0.307501 5 7 14893 MT_Ile 5_flank no 276 46 74 28.446557 279.101132 153.7738445 2.186882472 -0.032021 5 8 369 Asn1 AsnGTT 5_flank no 274 33.133191 346.376219 189.754705 2.278192553 -0.325262 5 9 14392 MT_21S 5_flank/21S_rRNA3 no 4639 91 112 33.655504 311.691737 172.6736205 2.237225995 -0.049761 5 10 17302 YHR203C 5_exon no 369 21 37 47.236668 294.502706 170.869687 2.232665024 0.165209 5 11 7250 snR65 snR65 yes 300 26 45 27.007477 289.991012 158.4992445 2.200027196 -0.163651 5 12 11621 "rRNA(18S,5.8S,25S)" 25S yes 7956 4991 5006 34.759426 304.252135 169.5057805 2.229184513 0.023305 5 13 16550 YER133W intron no 625 161 180 28.907592 316.835083 172.8713375 2.237722992 -0.200787 5 14 1718 Leu6 LeuGAG 3_flank no 282 32.09643 290.017868 161.057149 2.206980007 0.071312 5 15 4929 snR9 snR9 yes 387 51 67 31.481419 331.682244 181.5818315 2.259072392 -0.231036 5 16 6401 snR43 3_flank no 409 29.924271 332.216357 181.070314 2.257847255 -0.256017 5 17 10229 RUF6 RUF6 yes 1251 991 1010 28.350082 278.809917 153.5799995 2.186334662 -0.03591 5 18 6716 snR49 snR49 yes 365 106 125 30.901955 315.688712 173.2953335 2.238786868 -0.124448 5 19 7867 snoRNA cluster1 snR73 yes 1574 1131 1150 30.269993 270.66849 150.4692415 2.177447732 0.105368 5 20 4000 RNase MRP 3_flank no 540 31.687327 292.398112 162.0427195 2.209629523 0.042867 5 21 14927 MT_Asn 5_flank no 271 31 54 29.78034 306.096371 167.9383555 2.225149896 -0.106241 5 22 18095 YLR367W intron no 583 121 137 32.129643 292.039148 162.0843955 2.209741206 0.059604 5 23 17396 YIL069C intron no 509 261 280 31.148924 355.97707 193.562997 2.286822338 -0.410128 5 24 12723 MT_COX1 5_flank no 13084 46 72 30.117186 360.972279 195.5447325 2.291246122 -0.458513 5 25 17278 YHR141C intron no 541 81 100 34.53911 311.994271 173.2666905 2.23871508 -0.041428 5 26 13811 MT_COB bi2 no 7308 1351 1377 32.322613 353.783381 193.052997 2.285676548 -0.386644 5 27 7740 snoRNA cluster1 intergenic no 1574 496 515 36.628939 313.110819 174.869879 2.24271501 -0.033989 5 28 17869 YLL050C intron no 279 181 198 38.627486 373.218355 205.9229205 2.313704689 -0.512665 5 29 13781 MT_COB intronic no 7308 901 918 31.816767 308.547521 170.182144 2.230913991 -0.051856 5 30 20644 YHR203C spliced yes 40 13 28 1071.803124 984.309802 1028.056463 3.012016968 0.582247 5 31 426 Asp1 AspGTC_i 5_flank no 271 33.221966 385.435658 209.328812 2.320829009 -0.623012 5 32 11240 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3086 3101 43174.83918 18178.20813 30676.52366 4.486806143 0.394787 5 33 13932 MT_COB bi3 no 7308 3166 3190 30.404226 313.898044 172.151135 2.23590989 -0.13093 5 34 2287 Phe2 PheGAA_ii tRNA/intron no 292 31 i11 32.208052 298.968727 165.5883895 2.219029882 0.018972 5 35 17755 YKL157W intron no 483 241 257 32.036881 297.909547 164.973214 2.217413435 0.019942 5 36 21894 copy of SH18999 no 309 29.914011 276.901554 153.4077825 2.185847392 0.056669 5 37 10169 RUF6 RUF6 yes 1251 691 703 33.964302 320.798186 177.381244 2.248907696 -0.117147 5 38 17125 YHR010W intron no 661 221 241 29.898221 316.827336 173.3627785 2.238955859 -0.165557 5 39 472 Asp2 AspGTC_ii 5_flank no 272 38.077743 306.930588 172.5041655 2.236799587 0.025254 5 40 17076 YGR225W intron no 193 101 124 29.918191 313.095972 171.5070815 2.234282057 -0.143047 5 41 15433 YBL072C intron no 408 221 237 72.080623 314.107596 193.0941095 2.285769025 0.130489 5 42 10263 RUF7 5_flank no 700 41.119122 276.578918 158.84902 2.20098454 0.323206 5 43 1328 Ile3 IleTAT_ii tRNA yes 333 21 37 32.928002 278.093091 155.5105465 2.191759848 0.175326 5 44 18119 YLR388W 5_exon no 258 21 37 38.041397 318.811134 178.4262655 2.251458786 -0.080945 5 45 12890 MT_COX1 ai1 no 13084 2551 2572 29.954308 346.272663 188.1134855 2.27441993 -0.358013 5 46 265 Arg4 ArgCCT 5_flank no 272 32.169431 295.891809 164.03062 2.214924926 0.036766 5 47 2944 Ser1 SerAGA_i 5_flank no 283 30.406587 271.791711 151.099149 2.179262018 0.106849 5 48 21622 copy of SH7517 no 284 138.066621 332.949417 235.508019 2.372005699 0.381362 5 49 9923 RUF5-1 RUF5-1 yes 975 421 442 29.197787 291.845668 160.5217275 2.205533825 -0.050979 5 50 2280 Phe2 PheGAA_ii 5_flank/tRNA no 292 34.017261 304.608598 169.3129295 2.228690124 0.011475 5 51 16752 YGL076C intron no 559 461 479 32.280499 303.955804 168.1181515 2.225614606 -0.009141 5 52 15523 YBR048W intron no 611 421 435 36.982723 253.652705 145.317714 2.162318557 0.465958 5 53 11014 "rRNA(18S,5.8S,25S)" 18S yes 7956 1956 1969 100.180644 306.030491 203.1055675 2.307721828 0.358736 5 54 18941 YOL127W 5_exon no 514 1 18 34.721983 296.990227 165.856105 2.219731462 0.08256 5 55 20274 YDR447C spliced yes 40 13 31 43.323407 335.491541 189.407474 2.277397112 -0.203173 5 56 1425 Leu1 LeuCAA_i 3_flank no 315 34.254741 315.306617 174.780679 2.242493422 -0.07095 5 57 15592 YBR089C 5_exon no 214 1 17 42.745857 318.473137 180.609497 2.256740583 -0.063656 5 58 20600 YHR041C spliced yes 40 13 30 37.125702 322.49301 179.809356 2.254812286 -0.115253 5 59 601 Gln1 GlnCTG tRNA yes 272 46 60 48.866024 316.793384 182.829704 2.262046756 -0.022222 5 60 13051 MT_COX1 ai2 no 13084 4966 4985 29.319139 308.998289 169.158714 2.228294375 -0.139912 5 61 11965 "rRNA(18S,5.8S,25S)" 25S yes 7956 6711 6728 54.789955 312.824644 183.8072995 2.264362754 0.041929 5 62 6150 snR39B snR39B/3_flank no 296 31.008946 302.376667 166.6928065 2.221916859 -0.041515 5 63 7913 snoRNA cluster1 intergenic/snR72 no 1574 1361 1382 30.718771 319.487151 175.102961 2.24329349 -0.152677 5 64 10909 "rRNA(18S,5.8S,25S)" 18S yes 7956 1431 1448 54391.038 7963.740719 31177.38936 4.493839747 2.048119 5 65 7031 snR62 5_flank no 300 34.35845 267.98703 151.17274 2.179473485 0.287886 5 66 2607 Pro3 ProTGG_ii 5_flank/tRNA no 303 40.436387 287.333724 163.8850555 2.214539353 0.215088 5 67 3816 RNaseP RNaseP yes 569 46 58 34.29242 290.897719 162.5950695 2.211107372 0.12863 5 68 17101 YHL001W intron no 498 401 423 30.32251 311.312509 170.8175095 2.232532386 -0.118512 5 69 6193 snR40 snR40 yes 297 26 41 66.191999 288.676106 177.4340525 2.249036972 0.308314 5 70 667 Gln2 GlnTTG_i 3_flank no 272 37.094545 291.335784 164.2151645 2.21541326 0.157434 5 71 18336 YML124C exon/intron no 398 41 60 31.047636 304.722539 167.8850875 2.225012121 -0.054442 5 72 20777 YKL006C-A spliced yes 40 17 36 35.532236 310.810542 173.171389 2.23847614 -0.020296 5 73 17420 YIL111W intron no 188 61 80 31.446027 305.525288 168.4856575 2.226562937 -0.045972 5 74 4291 telomerase RNA telomerase yes 1501 491 510 31.571565 309.705186 170.6383755 2.232076708 -0.06683 5 75 20079 YCR031C spliced yes 40 17 33 33.814573 277.478112 155.6463425 2.19213892 0.207146 5 76 13470 MT_COX1 intronic no 13084 11251 11270 33.884354 321.587108 177.735731 2.249774745 -0.124193 5 77 13353 MT_COX1 intronic no 13084 9496 9512 40.454575 295.429582 167.9420785 2.225159524 0.137492 5 78 14830 MT_Lys; Arg1; Gly 3_flank no 682 631 657 29.657129 305.309072 167.4831005 2.223970992 -0.105829 5 79 4356 telomerase RNA telomerase yes 1501 816 835 31.830641 310.452443 171.141542 2.233355441 -0.062998 5 80 3207 Ser5 SerTGA 3_flank no 282 29.62198 299.093546 164.357763 2.215790222 -0.069198 5 81 1379 Leu1 LeuCAA_i 5_flank no 315 31.668682 345.405437 188.5370595 2.275396729 -0.328772 5 82 6721 snR49 snR49 yes 365 131 152 35.783742 289.72229 162.753016 2.211529045 0.156262 5 83 7277 snR65 3_flank no 300 33.393752 296.68195 165.037851 2.21758356 0.068976 5 84 6312 snR42 snR42/3_flank no 551 33.123101 305.905899 169.5145 2.229206853 -0.010058 5 85 7141 snR63 snR63 yes 455 211 223 76.051074 327.468984 201.760029 2.304835132 0.053958 5 86 21120 YNL112W spliced yes 40 5 17 100.78756 333.272791 217.0301755 2.336520122 0.167027 5 87 6971 snR60 5_flank no 304 32.158987 290.158904 161.1589455 2.207254417 0.07245 5 88 8289 snoRNA cluster4 intergenic no 638 231 250 27.694499 288.86085 158.2776745 2.199419661 -0.119421 5 89 10956 "rRNA(18S,5.8S,25S)" 18S yes 7956 1666 1683 2205.196263 3681.678857 2943.43756 3.468854827 -0.588961 5 90 13618 MT_ATP6 5_flank/ATP6 no 980 76 102 28.825538 316.720538 172.773038 2.23747597 -0.203089 5 91 3858 RNaseP RNaseP yes 569 256 271 32.260792 274.929707 153.5952495 2.186377784 0.175014 5 92 19153 YPL075W intron no 851 581 597 41.436001 286.145661 163.790831 2.214289586 0.228894 5 93 17757 YKL157W intron no 483 281 298 29.663094 309.787276 169.725185 2.229746291 -0.132429 5 94 165 Arg2 ArgACG_ii 5_flank no 273 29.547824 312.826879 171.1873515 2.233471673 -0.154472 5 95 12000 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6886 6903 42.863879 322.645595 182.754737 2.261868643 -0.098967 5 96 677 Gln3 GlnTTG_ii 5_flank no 272 31.690224 276.545882 154.118053 2.187853514 0.145589 5 97 1501 Leu3 LeuCAA_iii 5_flank no 314 37.787739 308.654924 173.2213315 2.238601373 0.008903 5 98 14756 MT_ORF11; Leu; Gln ORF11 yes 716 226 241 51.948814 290.360195 171.1545045 2.233388334 0.222802 5 99 1261 Ile2 IleTAT_i tRNA yes 333 1 13 32.787312 291.397598 162.092455 2.2097628 0.084812 5 100 3407 Thr4 ThrTGT_ii 3_flank no 272 33.143166 335.223857 184.1835115 2.265250749 -0.235985 5 101 12240 5S rRNA NTS2 no 1420 156 173 33.439665 338.607488 186.0235765 2.26956799 -0.26104 5 102 4927 snR9 snR9 yes 387 41 57 35.704645 269.076309 152.390477 2.182957828 0.32055 5 103 8992 snR17a / U3a U3a yes 690 246 262 34.869187 258.008566 146.4388765 2.165656388 0.373159 5 104 1121 Gly4 GlyTCC 3_flank no 272 31.89904 291.327449 161.6132445 2.208476949 0.056575 6 2 2565 Pro2 ProTGG_i intron/tRNA no 303 i25 45 49.716096 535.531848 292.623972 2.466309901 -1.332773 6 3 16144 YDR092W intron no 368 161 178 36.240173 294.419193 165.329683 2.218350833 0.121767 6 4 21900 copy of SH19200 no 601 33.858201 265.938873 149.898537 2.175797394 0.286697 6 5 12621 MT_15S 15S yes 1848 1066 1086 33.582962 309.492775 171.5378685 2.234360009 -0.033157 6 6 10690 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 336 354 35.347008 288.975938 162.161473 2.209947681 0.157552 6 7 13076 MT_COX1 ai3 no 13084 5341 5360 30.714915 308.265974 169.4904445 2.229145219 -0.086979 6 8 15881 YDL082W intron no 465 161 178 38.529498 294.058945 166.2942215 2.220877158 0.146033 6 9 4680 snR4 5_flank no 386 33.906447 275.304992 154.6057195 2.189225556 0.224455 6 10 17106 YHR001W 5_exon no 163 1 22 29.458724 308.680893 169.0698085 2.228066061 -0.13306 6 11 16858 YGL187C 5_exon no 442 21 40 33.136172 330.49543 181.815801 2.259631624 -0.200966 6 12 9186 snR7 U5 RNA U5 yes 415 201 213 6756.750647 10941.09288 8848.921765 3.946890355 -1.027898 6 13 18915 YOL120C 3_exon no 547 501 517 40.900695 278.825609 159.863152 2.203748372 0.300114 6 14 9308 RUF1 RUF1 yes 750 116 133 29.203625 282.397071 155.800348 2.192568423 -0.006843 6 15 6284 snR42 snR42 yes 551 201 220 28.527806 284.538603 156.5332045 2.194606476 -0.053283 6 16 2118 Met1 MetCAT_i 5_flank no 273 29.969005 259.879757 144.924381 2.161141454 0.144005 6 17 18918 YOL121C 5_exon no 490 21 38 53.362434 302.285945 177.8241895 2.249990838 0.123141 6 18 7803 snoRNA cluster1 snR75 yes 1574 811 826 43.63025 265.11857 154.37441 2.188575311 0.446861 6 19 9240 snR6 / U6 RNA U6 yes 312 71 86 55.026612 310.506757 182.7666845 2.261897034 0.06246 6 20 626 Gln2 GlnTTG_i 5_flank no 272 31.803016 268.256197 150.0296065 2.17617697 0.194051 6 21 14597 MT_21S Sce1 no 4639 3166 3188 29.914272 321.032368 175.47332 2.244211093 -0.189272 6 22 6552 snR46 3_flank no 397 30.10873 309.850235 169.9794825 2.230396503 -0.117232 6 23 5107 snR11 snR11 yes 458 136 151 34.653497 274.0503 154.3518985 2.188511976 0.255622 6 24 7933 snoRNA cluster1 snR72/3_flank no 1574 1461 1475 43.641305 292.820017 168.230661 2.225905151 0.169651 6 25 16617 YFL039C intron no 408 81 98 32.636371 303.254784 167.9455775 2.225168572 0.005324 6 26 11299 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3381 3398 858.087371 786.195892 822.1416315 2.914946641 0.678075 6 27 9730 RUF4 RUF4 yes 988 426 442 32.61395 292.170819 162.3923845 2.210565659 0.074397 6 28 2749 Pro5 ProTGG_iv 3_flank no 303 30.265565 275.115925 152.690745 2.183812714 0.083438 6 29 18578 YNL044W intron no 179 81 100 32.223631 316.633351 174.428491 2.241617424 -0.106636 6 30 10440 RUF8 RUF8 yes 1151 126 142 58.053783 324.359992 191.2068875 2.281503532 -0.0332 6 31 5221 snR30 5_flank no 801 35.811768 306.331997 171.0718825 2.233178634 0.018818 6 32 21217 YOR122C spliced yes 40 13 29 43.890922 331.378266 187.634594 2.273312912 -0.167412 6 33 1527 Leu3 LeuCAA_iii tRNA/3_flank no 314 32.907883 308.06461 170.4862465 2.231689349 -0.030135 6 34 5824 snR35 snR35 yes 740 306 323 33.654341 282.598828 158.1265845 2.19900489 0.168518 6 35 2783 Pro6 ProTGG_v tRNA yes 302 6 23 128.792316 367.853337 248.3228265 2.395016643 0.115874 6 36 12264 5S rRNA NTS2 no 1420 276 297 36.360198 321.079036 178.719617 2.252172225 -0.104877 6 37 851 Glu2 GluTTC_i tRNA yes 272 21 37 69.323638 293.247768 181.285703 2.258363555 0.285084 6 38 13960 MT_COB bi3 no 7308 3586 3607 30.029133 300.23736 165.1332465 2.217834519 -0.06197 6 39 108 Arg1 ArgACG_i 5_flank no 273 32.010142 290.333084 161.171613 2.207288552 0.066501 6 40 3435 Trp1 TrpCCA tRNA yes 306 6 19 122.046587 361.14731 241.5969485 2.383091445 0.115894 6 41 19300 YPL198W intron no 509 61 78 33.918395 302.850828 168.3846115 2.226302399 0.024572 6 42 15955 YDL130W intron no 401 81 97 29.798184 295.11605 162.457117 2.210738742 -0.038355 6 43 18006 YLR287C intron no 530 301 317 31.783306 292.318788 162.051047 2.209651841 0.046525 6 44 10349 RUF7 RUF7 yes 700 356 375 31.782256 302.431728 167.106992 2.222994622 -0.016129 6 45 18334 YML124C 5_exon no 398 1 15 31.853014 290.166429 161.0097215 2.206852099 0.06242 6 46 1365 Ile3 IleTAT_ii 3_flank no 333 36.116053 367.326261 201.721157 2.30475145 -0.479114 6 47 15662 YBR189W intron no 513 381 395 73.92059 280.014726 176.967658 2.247893903 0.424753 6 48 17635 YJR094W intron no 375 301 322 34.874188 313.993054 174.433621 2.241630196 -0.053212 6 49 19398 YPR063C exon/intron no 186 41 60 33.324249 316.078162 174.7012055 2.242295902 -0.088393 6 50 20164 YDL136W spliced yes 40 1 20 57.770295 319.913554 188.8419245 2.276098418 -0.000046 6 51 19010 YOR182C intron no 511 81 98 29.982192 286.595173 158.2886825 2.199449864 0.014387 6 52 6835 snR52 snR52/3_flank no 292 30.248511 304.687857 167.468184 2.223932311 -0.081461 6 53 6928 snR58 snR58 yes 296 1 21 30.33549 308.656906 169.496198 2.229159961 -0.102292 6 54 1270 Ile2 IleTAT_i intron yes 333 i9 i24 32.470307 277.907164 155.1887355 2.190860194 0.161941 6 55 2766 Pro6 ProTGG_v 5_flank no 302 45.502154 306.631317 176.0667355 2.245677312 0.04918 6 56 6333 snR43 5_flank no 409 85.709208 297.470257 191.5897325 2.282372231 0.342606 6 57 1197 Ile1 IleAAT 5_flank no 274 55.868825 285.972186 170.9205055 2.232794169 0.280867 6 58 15550 YBR078W intron no 430 361 380 33.904419 313.127602 173.5160105 2.239339554 -0.058068 6 59 19776 Negative Control no 60 NA #VALUE! 31.609562 275.736225 153.6728935 2.186597269 0.147949 6 60 12946 MT_COX1 ai2 no 13084 3391 3415 29.310148 316.095314 172.702731 2.237299205 -0.182042 6 61 16297 YDR450W intron no 535 221 239 31.219813 290.26328 160.7415465 2.206128142 0.040838 6 62 16203 YDR381C intron/exon no 294 241 260 30.932437 312.216904 171.5746705 2.234453174 -0.103058 6 63 17129 YHR010W intron no 661 301 320 30.615503 300.901108 165.7583055 2.219475298 -0.045842 6 64 9575 RUF3 RUF3 yes 631 261 277 36.523119 298.295263 167.409191 2.223779298 0.092664 6 65 15430 YBL072C intron no 408 161 178 40.406364 307.467944 173.937154 2.24039236 0.025786 6 66 2804 Pro6 ProTGG_v 3_flank no 302 34.17211 303.586548 168.879329 2.227576495 0.021661 6 67 10894 "rRNA(18S,5.8S,25S)" 18S yes 7956 1356 1376 466.969305 449.255575 458.11244 2.660972085 0.922695 6 68 5905 snR36 5_flank no 555 40.71596 329.904141 185.3100505 2.267898974 -0.167313 6 69 19077 YOR293W intron no 537 301 319 28.554316 289.990743 159.2725295 2.202140877 -0.077114 6 70 18079 YLR344W intron no 547 341 360 28.818184 293.667277 161.2427305 2.207480144 -0.079598 6 71 8255 snoRNA cluster4 5_flank no 638 61 79 37.538641 313.057918 175.2982795 2.243777654 -0.031277 6 72 5781 snR35 snR35 yes 740 91 105 70.073491 289.350954 179.7122225 2.254577615 0.322748 6 73 7173 snR64 5_flank no 301 31.502626 291.024807 161.2637165 2.207536664 0.045431 6 74 12153 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7651 7666 99.130853 321.761504 210.4461785 2.323141044 0.237666 6 75 9019 snR17a / U3a U3a yes 690 381 402 30.515221 301.575359 166.04529 2.220226561 -0.053389 6 76 4367 telomerase RNA telomerase yes 1501 871 888 35.883686 332.82643 184.355058 2.265655057 -0.206484 6 77 14505 MT_21S 21S_rRNA3 yes 4639 1786 1802 97.043822 289.272457 193.1581395 2.285913014 0.472796 6 78 11414 "rRNA(18S,5.8S,25S)" 25S yes 7956 3956 3973 6527.563091 1716.142289 4121.85269 3.615092467 2.012927 6 79 3541 Tyr2 TyrGTA_ii 5_flank no 289 80.048684 319.120685 199.5846845 2.300127212 0.140832 6 80 6586 snR47 snR47 yes 299 36 55 33.59625 372.047092 202.821671 2.307114356 -0.523757 6 81 6408 snR43 3_flank no 409 35.600866 301.069888 168.335377 2.226175396 0.059193 6 82 18520 YMR225C 5_exon no 247 21 37 33.287118 288.793492 161.040305 2.206934584 0.117138 6 83 15858 YDL079C intron no 392 81 97 41.524491 287.598903 164.561697 2.216328757 0.214935 6 84 19488 YPT1 YPT1 yes 402 61 73 34.923374 266.594385 150.7588795 2.178282901 0.314509 6 85 6525 snR46 snR46 yes 397 116 133 32.561026 311.695256 172.128141 2.235851878 -0.063478 6 86 8665 LSR1 / U2 RNA 5_flank no 1375 34.312853 291.159653 162.736253 2.211484312 0.126652 6 87 13291 MT_COX1 ai5a no 13084 8566 8587 29.852699 345.625902 187.7393005 2.273555195 -0.3548 6 88 6576 snR47 5_flank/snR47 no 299 33.453474 280.736542 157.095008 2.196162385 0.17444 6 89 9204 snR7 U5 RNA 3_flank no 415 30.946817 279.406819 155.176818 2.190826842 0.097416 6 90 14326 MT_VAR1 VAR1 yes 1467 1096 1117 29.455027 312.415243 170.935135 2.232831339 -0.155332 6 91 5417 snR31 snR31 yes 425 151 163 114.503367 397.695725 256.099546 2.408408809 -0.138297 6 92 21482 copy of SH1655 no 315 33.305756 306.575915 169.9408355 2.230297749 -0.013188 6 93 1480 Leu2 LeuCAA_ii 3_flank no 314 36.760232 279.268331 158.0142815 2.198696341 0.258231 6 94 19825 Negative Control no 60 NA #VALUE! 32.923407 286.978618 159.9510125 2.203986994 0.117272 6 95 15630 YBR181C intron/exon no 452 381 402 31.169932 294.191076 162.680504 2.211335509 0.014421 6 96 9752 RUF4 RUF4 yes 988 536 548 73.259277 318.539788 195.8995325 2.2920334 0.102734 6 97 16329 YDR471W intron no 484 341 357 33.794067 321.926189 177.860128 2.250078601 -0.127902 6 98 1267 Ile2 IleTAT_i tRNA/intron no 333 31 i10 34.316897 305.595294 169.9560955 2.230336745 0.007114 6 99 4476 U3b (snR17b) 5_flank no 662 32.872605 302.814613 167.843609 2.224904809 0.0119 6 100 21360 Ile2_3 spliced yes 40 5 21 31.324391 281.022889 156.17364 2.193607733 0.103896 6 101 18250 YML034W intron no 226 101 123 31.673119 336.901379 184.287249 2.265495287 -0.267107 6 102 2949 Ser1 SerAGA_i 5_flank no 283 36.035206 261.24298 148.639093 2.172133047 0.384569 6 103 1235 Ile1 IleAAT 3_flank no 274 34.198493 248.526149 141.362321 2.150333667 0.408615 6 104 7334 snR66 3_flank no 286 34.349511 320.984994 177.6672525 2.249607386 -0.113916 7 2 15012 MT_COX 2; ORF1 COX2 no 2427 781 797 34.042625 461.993653 248.018139 2.394483444 -1.106995 7 3 13868 MT_COB intronic no 7308 2206 2228 29.612948 306.362227 167.9875875 2.225277193 -0.113726 7 4 7097 snR63 5_flank/snR63 no 455 29.499808 284.362487 156.9311475 2.19570915 -0.0004 7 5 6622 snR48 5_flank no 313 29.316573 258.907313 144.111943 2.158699974 0.11164 7 6 8461 snoRNA cluster 5 snR128/3_flank no 586 471 487 43.939684 327.579454 185.759569 2.268951195 -0.136703 7 7 3553 Tyr2 TyrGTA_ii tRNA/intron no 289 34 39 30.836925 292.727316 161.7821205 2.208930523 0.012389 7 8 8336 snoRNA cluster4 snR53 yes 638 466 482 38.733839 304.55665 171.6452445 2.234631776 0.048509 7 9 12981 MT_COX1 ai2 no 13084 3916 3938 27.999591 303.621045 165.810318 2.219611552 -0.168759 7 10 19221 YPL081W 3_exon no 601 581 596 47.86939 305.496398 176.682894 2.247194504 0.068573 7 11 20829 YKR094C spliced yes 40 13 30 27.364546 267.121264 147.242905 2.168034377 -0.045151 7 12 6078 snR37 snR37 yes 586 306 322 33.14338 291.746564 162.444972 2.210706274 0.093888 7 13 2433 Phe5 PheGAA_v 5_flank no 291 33.110537 293.692662 163.4015995 2.213256303 0.080612 7 14 14002 MT_COB intronic no 7308 4216 4238 26.301501 298.822092 162.5617965 2.21101849 -0.244754 7 15 5482 snR32 snR32 yes 388 71 86 60.923191 328.215381 194.569286 2.289074285 -0.045858 7 16 14408 MT_21S 21S_rRNA3 yes 4639 331 349 436.038117 600.293799 518.165958 2.714468878 0.337173 7 17 19944 YBL040C spliced yes 40 9 28 28.401638 269.646341 149.0239895 2.173256186 0.010188 7 18 8769 LSR1 / U2 RNA U2 yes 1375 486 498 70.373698 338.519301 204.4464995 2.310579679 -0.063404 7 19 8390 snoRNA cluster 5 snR190 yes 586 116 131 35.714549 271.471681 153.593115 2.186371748 0.304522 7 20 17023 YGR148C intron no 479 381 400 29.678547 309.062243 169.370395 2.2288375 -0.127571 7 21 385 Asn1 AsnGTT tRNA yes 274 6 20 32.145674 276.288462 154.217068 2.188132442 0.162204 7 22 15709 YBR220C intron no 521 341 355 36.778719 306.367918 171.5733185 2.234449751 0.027212 7 23 3753 Val4 ValTAC 5_flank/tRNA no 274 52.538232 286.736248 169.63724 2.229521198 0.258727 7 24 175 Arg2 ArgACG_ii 5_flank/tRNA no 273 30.507638 295.583383 163.0455105 2.212308845 -0.016699 7 25 19824 Negative Control no 60 NA #VALUE! 32.855727 294.215045 163.535386 2.21361174 0.069272 7 26 5710 snR34 snR34 yes 750 471 490 31.817752 309.040778 170.429265 2.231544171 -0.054765 7 27 13217 MT_COX1 ai4 no 13084 7456 7475 30.697476 319.248464 174.97297 2.242970964 -0.152025 7 28 6791 snR50 3_flank no 290 30.592532 287.41182 159.002176 2.201403068 0.03782 7 29 9901 RUF5-1 RUF5-1 yes 975 311 332 30.383366 301.898265 166.1408155 2.220476338 -0.059882 7 30 4519 U3b (snR17b) U3b yes 662 151 168 32.280675 275.146179 153.713427 2.186711805 0.174208 7 31 9533 RUF3 RUF3 yes 631 51 69 31.916559 310.746712 171.3316355 2.233837561 -0.064223 7 32 9369 RUF1 RUF1 yes 750 421 438 31.545831 341.45554 186.5006855 2.270680432 -0.301957 7 33 17579 YJL191W intron no 508 101 117 58.930647 382.207948 220.5692975 2.34354506 -0.437886 7 34 5840 snR35 snR35 yes 740 386 398 99.1638 422.700272 260.932036 2.416527403 -0.373239 7 35 9860 RUF5-1 RUF5-1 yes 975 106 127 36.935486 397.995559 217.4655225 2.337390413 -0.693344 7 36 3370 Thr4 ThrTGT_ii 5_flank no 272 34.631962 303.669084 169.150523 2.228273345 0.026524 7 37 2629 Pro3 ProTGG_ii tRNA/3_flank no 303 36.524992 265.635031 151.0800115 2.179207009 0.36797 7 38 20324 YER056C-A spliced yes 40 13 29 90.870198 326.885861 208.8780295 2.319892762 0.150611 7 39 6790 snR50 3_flank no 290 44.436999 258.37721 151.4071045 2.180146254 0.5205 7 40 17667 YKL006C intron no 241 81 97 38.116895 328.731881 183.424388 2.263457079 -0.166384 7 41 8137 snoRNA cluster 3; snR41/intergenic no 743 196 212 41.025316 311.750183 176.3877495 2.246468419 -0.010983 7 42 13323 MT_COX1 ai5a no 13084 9046 9068 29.737887 324.593352 177.1656195 2.248379447 -0.215758 7 43 1280 Ile2 IleTAT_i intron/tRNA no 333 i59 48 81.347654 298.7527 190.050177 2.278868278 0.306875 7 44 6426 snR45 5_flank no 372 31.657741 318.190631 174.924186 2.242849862 -0.126097 7 45 10625 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 11 31 29.701121 307.94919 168.8251555 2.227437158 -0.120134 7 46 217 Arg3 ArgCCG 5_flank no 272 35.959412 346.809465 191.3844385 2.281906622 -0.32128 7 47 16517 YER117W 3_exon no 571 521 537 32.205148 293.81652 163.010834 2.212216469 0.050884 7 48 8679 LSR1 / U2 RNA U2 yes 1375 36 53 34.728814 269.777399 152.2531065 2.182566163 0.286823 7 49 17243 YHR079C 3_exon no 186 141 160 37.419767 271.032297 154.226032 2.188157685 0.339573 7 50 6734 snR49 3_flank no 365 99.223376 300.993674 200.108525 2.301265591 0.391646 7 51 19659 SIR1 2.2 SIR1 2.2 yes 401 301 318 38.599043 302.973154 170.7860985 2.232452517 0.062756 7 52 7195 snR64 snR64 yes 301 41 55 4519.784375 2636.036092 3577.910234 3.55362944 0.85054 7 53 1170 His1 HisGTG tRNA/3_flank no 272 30.280501 307.046033 168.663267 2.227020508 -0.094553 7 54 17004 YGR148C 5_exon no 479 1 18 32.448447 304.7894 168.6189235 2.226906312 -0.009542 7 55 9137 snR7 U5 RNA 5_flank no 415 30.115557 314.072724 172.0941405 2.235766084 -0.141916 7 56 11954 "rRNA(18S,5.8S,25S)" 25S yes 7956 6656 6671 3600.042007 1456.993343 2528.517675 3.402865994 1.532709 7 57 9111 snR14 / U4 RNA 3_flank no 360 34.144863 319.033977 176.58942 2.24696468 -0.101323 7 58 8836 LSR1 / U2 RNA U2 yes 1375 821 837 31.832089 301.001716 166.4169025 2.221197434 -0.005766 7 59 1991 Lys3 LysTTT_i 5_flank no 296 29.538115 288.852433 159.195274 2.201930171 -0.019245 7 60 3490 Tyr1 TyrGTA_i 5_flank/tRNA no 289 42.222797 293.788885 168.005841 2.225324381 0.156959 7 61 225 Arg3 ArgCCG 5_flank/tRNA no 272 31.244609 305.120109 168.182359 2.22578044 -0.050239 7 62 10540 RUF8 RUF8 yes 1151 626 642 30.921627 305.717733 168.31968 2.226134897 -0.064692 7 63 1940 Lys2 LysCTT_ii 5_flank no 273 30.57396 314.626838 172.600399 2.237041795 -0.129387 7 64 12863 MT_COX1 ai1 no 13084 2146 2167 32.326741 310.747033 171.536887 2.234357524 -0.058938 7 65 16228 YDR381W intron no 866 461 478 40.322221 322.423621 181.372921 2.258572447 -0.105785 7 66 5784 snR35 snR35 yes 740 106 125 69.156887 332.701974 200.9294305 2.303043553 -0.028703 7 67 4541 U3b (snR17b) U3b yes 662 261 278 36.328672 273.51234 154.920506 2.190108907 0.30481 7 68 14537 MT_21S 21S_rRNA3 yes 4639 2266 2287 28.353455 305.310919 166.832187 2.222279843 -0.156636 7 69 17530 YJL177W 5_exon no 417 1 18 28.640116 290.826464 159.73329 2.203395437 -0.076284 7 70 3093 Ser3 SerCGA 3_flank no 301 50.077826 296.422183 173.2500045 2.238673255 0.159248 7 71 4259 telomerase RNA telomerase yes 1501 331 348 31.283226 300.871138 166.077182 2.220309967 -0.023129 7 72 16500 YER117W intron no 571 181 200 30.389114 314.187768 172.288441 2.236256141 -0.133148 7 73 20622 YHR101C spliced yes 40 5 23 33.683635 297.897142 165.7903885 2.219559349 0.062453 7 74 21285 YPL143W spliced yes 40 13 29 37.98347 275.144716 156.564093 2.194692166 0.308548 7 75 7264 snR65 snR65/3_flank no 300 31.498631 290.139993 160.819312 2.2063382 0.050905 7 76 7398 snR68 3_flank no 336 31.424359 295.080432 163.2523955 2.212859563 0.017352 7 77 5677 snR34 snR34 yes 750 306 325 42.017008 340.772044 191.394526 2.281929513 -0.251737 7 78 1022 Gly2 GlyCCC_ii 3_flank no 272 33.394731 298.357741 165.876236 2.219784172 0.055068 7 79 18973 YOR096W intron no 501 141 162 38.613169 382.819756 210.7164625 2.323698467 -0.579808 7 80 1319 Ile3 IleTAT_ii 5_flank no 333 33.193025 285.92916 159.5610925 2.202927001 0.132534 7 81 14596 MT_21S Sce1 no 4639 3151 3172 28.842515 312.795521 170.819018 2.232536221 -0.179515 7 82 9340 RUF1 RUF1 yes 750 276 290 119.291075 309.491737 214.391406 2.331207372 0.440651 7 83 4480 U3b (snR17b) 5_flank no 662 32.654348 306.789135 169.7217415 2.229737479 -0.023084 7 84 5045 snR10 3_flank no 445 30.360529 294.715661 162.538095 2.210955165 -0.016333 7 85 17143 YHR010W intron no 661 581 598 38.329412 283.320435 160.8249235 2.206353353 0.239938 7 86 18840 YNL302C 3_exon no 651 621 637 31.863968 279.269692 155.56683 2.191917002 0.133252 7 87 20238 YDR305C spliced yes 40 13 34 30.486233 318.153726 174.3199795 2.241347166 -0.152912 7 88 13030 MT_COX1 ai2 no 13084 4651 4670 31.036391 297.86062 164.4485055 2.216029931 -0.012886 7 89 14843 MT_Asp tRNA/3_flank no 275 166 187 30.521527 294.245328 162.3834275 2.210541704 -0.00787 7 90 9798 RUF4 RUF4 yes 988 766 782 53.053744 375.225437 214.1395905 2.330696968 -0.433676 7 91 10923 "rRNA(18S,5.8S,25S)" 18S yes 7956 1501 1519 36463.60018 9837.047119 23150.32365 4.364557067 1.207715 7 92 2521 Pro1 ProAGG 3_flank no 272 53.357033 283.585652 168.4713425 2.226526037 0.291691 7 93 10223 RUF6 RUF6 yes 1251 961 973 130.419689 362.066596 246.2431425 2.391364145 0.1592 7 94 12642 MT_15S 15S yes 1848 1381 1409 34.347445 337.528579 185.938012 2.269368183 -0.249677 7 95 43 Ala1 AlaAGC 3_flank no 273 43.817498 294.313156 169.065327 2.228054549 0.156274 7 96 5987 snR36 3_flank no 555 35.884813 336.087757 185.986285 2.26948092 -0.233727 7 97 18088 YLR344W 3_exon no 547 521 538 29.81956 274.062517 151.9410385 2.18167509 0.065479 7 98 16507 YER117W intron no 571 321 338 32.31215 310.932863 171.6225065 2.23457424 -0.060603 7 99 13850 MT_COB bi2 no 7308 1936 1958 28.969161 298.159807 163.564484 2.213689008 -0.091696 7 100 9577 RUF3 RUF3 yes 631 271 290 29.443355 310.180634 169.8119945 2.229968363 -0.142529 7 101 8944 snR17a / U3a U3a yes 690 6 23 31.866652 328.631497 180.2490745 2.255873043 -0.203164 7 102 7366 snR68 snR68 yes 336 51 70 32.190193 314.213102 173.2016475 2.238552019 -0.088104 7 103 12902 MT_COX1 exon2 yes 13084 2731 2750 30.345056 304.584507 167.4647815 2.223923487 -0.077509 7 104 19029 YOR182C intron/exon no 511 461 475 38.909106 299.643003 169.2760545 2.228595528 0.094368 8 2 21118 YNL096C spliced yes 40 25 37 31.640725 375.386724 203.5137245 2.308593702 -0.554202 8 3 9230 snR6 / U6 RNA U6 yes 312 21 38 31.606117 282.197911 156.902014 2.195628518 0.105563 8 4 13087 MT_COX1 ai3 no 13084 5506 5523 44.459806 340.8145 192.637153 2.284740051 -0.238369 8 5 18960 YOL127W intron no 514 381 395 37.779516 260.21373 148.996623 2.173176425 0.441198 8 6 13207 MT_COX1 ai4 no 13084 7306 7326 29.033251 322.709991 175.871621 2.245195766 -0.230085 8 7 9660 RUF4 RUF4 yes 988 76 94 28.773909 298.948244 163.8610765 2.214475804 -0.10572 8 8 12369 5S rRNA NTS2 no 1420 801 815 44.063496 294.726555 169.3950255 2.228900653 0.153221 8 9 11739 "rRNA(18S,5.8S,25S)" 25S yes 7956 5581 5599 30.182946 292.102303 161.1426245 2.207210433 -0.00606 8 10 19988 YBL092W spliced yes 40 9 26 50.198137 301.619775 175.908956 2.245287951 0.113952 8 11 20612 YHR079C-A spliced yes 40 13 31 39.60727 323.507775 181.5575225 2.259014248 -0.11754 8 12 16200 YDR381C intron no 294 181 198 67.552188 349.253305 208.4027465 2.318903438 -0.158196 8 13 11673 "rRNA(18S,5.8S,25S)" 25S yes 7956 5251 5269 18744.83343 23343.09817 21043.9658 4.323127587 -1.042448 8 14 12382 5S rRNA NTS2 no 1420 866 878 47.431039 294.731304 171.0811715 2.233202215 0.163665 8 15 1813 Leu8 LeuTAG_i tRNA/3_flank no 301 33.65961 284.135158 158.897384 2.201116747 0.158699 8 16 10851 "rRNA(18S,5.8S,25S)" 18S yes 7956 1141 1161 88.264868 345.649431 216.9571495 2.336373966 0.004556 8 17 18370 YMR079W intron no 256 141 163 28.393344 297.356231 162.8747875 2.211853862 -0.119297 8 18 12685 MT_Trp 3_flank no 274 196 220 30.946287 311.658656 171.3024715 2.233763629 -0.099295 8 19 3898 RNase MRP 5_flank no 540 29.278113 303.366024 166.3220685 2.220949878 -0.107505 8 20 5634 snR34 snR34 yes 750 91 108 31.802111 294.841564 163.3218375 2.213044257 0.031321 8 21 14249 MT_Ser 3_flank no 290 211 235 29.942105 323.487066 176.7145855 2.247272396 -0.202326 8 22 16055 YDL191W 3_exon no 591 561 578 50.004352 308.592293 179.2983225 2.253576226 0.052673 8 23 3923 RNase MRP RNaseMRP yes 540 31 48 30.382456 298.580468 164.481462 2.216116958 -0.039567 8 24 17317 YHR203C 3_exon no 369 321 338 35.019202 324.447305 179.7332535 2.254628436 -0.137467 8 25 20268 YDR424C spliced yes 40 17 33 30.741607 300.865463 165.803535 2.219593786 -0.041332 8 26 4983 snR10 5_flank no 445 33.112711 310.500792 171.8067515 2.235040226 -0.047032 8 27 14996 MT_COX 2; ORF1 COX2 no 2427 541 560 30.912429 314.794663 172.853546 2.237678293 -0.118872 8 28 18020 YLR306W intron no 234 61 77 33.091802 297.583092 165.337447 2.218371227 0.055791 8 29 3224 Thr1 ThrAGT 5_flank no 273 46.341427 286.221809 166.281618 2.220844242 0.240716 8 30 8634 snR19 / U1 RNA U1/3_flank no 868 30.397537 315.048417 172.722977 2.237350115 -0.137895 8 31 4660 snR3 3_flank no 395 34.453948 291.350565 162.9022565 2.2119271 0.126731 8 32 14982 MT_COX 2; ORF1 COX2 no 2427 331 348 30.81931 279.908857 155.3640835 2.191350627 0.08861 8 33 3767 Val4 ValTAC tRNA yes 274 60 72 33.706671 268.438701 151.072686 2.179185951 0.264787 8 34 10738 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 576 593 79.375184 359.669574 219.522379 2.341478801 -0.146592 8 35 2315 Phe3 PheGAA_iii 5_flank no 291 41.55995 305.493843 173.5268965 2.2393668 0.046468 8 36 19899 snR17B spliced yes 40 1 18 30.78439 323.090414 176.937402 2.247819646 -0.175446 8 37 10082 RUF6 RUF6 yes 1251 256 278 53.568511 410.225457 231.896984 2.3652951 -0.652342 8 38 18579 YNL044W intron no 179 101 118 32.476767 286.999017 159.737892 2.203407949 0.102879 8 39 17386 YIL069C intron no 509 61 76 82.877364 320.660395 201.7688795 2.304854182 0.146182 8 40 4231 telomerase RNA telomerase yes 1501 191 207 48.513944 270.592947 159.5534455 2.202906187 0.401263 8 41 14065 MT_COB bi4 no 7308 5161 5180 28.8695 310.233003 169.5512515 2.229301 -0.163393 8 42 2554 Pro2 ProTGG_i tRNA yes 303 6 23 131.224649 360.173255 245.698952 2.390403304 0.174997 8 43 10710 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 436 449 63.039861 314.876461 188.958161 2.276365654 0.071238 8 44 13428 MT_COX1 intronic no 13084 10621 10647 29.564453 296.452842 163.0086475 2.212210644 -0.0549 8 45 15764 YCR031C 3_exon no 407 361 377 37.659444 286.108136 161.88379 2.209203363 0.208439 8 46 20733 YJL189W spliced yes 40 13 29 64.359475 347.078859 205.719167 2.313274757 -0.163173 8 47 1528 Leu3 LeuCAA_iii tRNA/3_flank no 314 34.130672 321.321844 177.726258 2.249751597 -0.119155 8 48 12292 5S rRNA NTS2 no 1420 416 432 42.901773 280.182581 161.542177 2.208285931 0.29091 8 49 13956 MT_COB bi3 no 7308 3526 3550 34.111573 325.821008 179.9662905 2.255191165 -0.15375 8 50 18898 YOL120C intron no 547 161 181 29.341218 297.717181 163.5291995 2.213595311 -0.07065 8 51 14547 MT_21S 21S_rRNA3 yes 4639 2416 2442 27.604615 306.205712 166.9051635 2.222469773 -0.202121 8 52 13419 MT_COX1 intronic no 13084 10486 10510 30.072244 310.62455 170.348397 2.231338051 -0.123093 8 53 6634 snR48 5_flank/snR48 no 313 32.420062 302.523582 167.471822 2.223941745 0.00406 8 54 18377 YMR116C exon/intron no 373 41 58 36.837 317.098536 176.967768 2.247894173 -0.068832 8 55 12207 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7921 7946 3890.144665 1793.583613 2841.864139 3.453603312 1.295885 8 56 8082 snoRNA cluster 2 3_flank no 739 646 667 32.210571 314.638967 173.424769 2.239111125 -0.091189 8 57 7943 snoRNA cluster1 3_flank no 1574 1511 1530 32.084454 294.524206 163.30433 2.2129977 0.042534 8 58 20193 YDR005C spliced yes 40 1 18 36.307731 312.528572 174.4181515 2.241591679 -0.029593 8 59 10966 "rRNA(18S,5.8S,25S)" 18S yes 7956 1716 1736 38.313153 302.387681 170.350417 2.231343201 0.067482 8 60 13193 MT_COX1 exon4 yes 13084 7096 7117 30.551846 298.503822 164.527834 2.21623938 -0.033288 8 61 9198 snR7 U5 RNA 3_flank no 415 34.538889 302.689375 168.614132 2.226893971 0.033396 8 62 2863 Pro7 ProTGG_vi 3_flank no 303 76.631317 280.177948 178.4046325 2.251406127 0.438064 8 63 11216 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2966 2984 68.336069 307.386758 187.8614135 2.273837586 0.161465 8 64 10679 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 281 296 783.784659 564.571745 674.178202 2.828774706 1.126619 8 65 12744 MT_COX1 ai1 no 13084 361 376 64.069504 316.765534 190.417519 2.279706902 0.061896 8 66 15097 MT_COX 2; ORF1 ORF2exon2 yes 2427 2056 2076 30.0695 317.235791 173.6526455 2.239681404 -0.161964 8 67 230 Arg3 ArgCCG tRNA yes 272 6 22 32.26609 297.988553 165.1273215 2.217818936 0.026898 8 68 13245 MT_COX1 ai4 no 13084 7876 7901 28.417158 321.618315 175.0177365 2.243082063 -0.246243 8 69 3104 Ser4 SerGCT 5_flank no 301 37.097813 330.590355 183.844084 2.264449659 -0.184611 8 70 7912 snoRNA cluster1 intergenic/snR72 no 1574 1356 1377 29.016811 323.884747 176.450779 2.24662358 -0.237366 8 71 18224 YML026C intron no 501 81 98 31.372721 314.755373 173.064047 2.238206855 -0.103208 8 72 21928 copy of SH20403 no 40 45.4646 280.530262 162.997431 2.21218076 0.29309 8 73 7860 snoRNA cluster1 intergenic no 1574 1096 1115 29.418499 308.208561 168.81353 2.227407251 -0.131668 8 74 5997 snR37 5_flank no 586 35.787584 338.648822 187.218203 2.272348072 -0.255185 8 75 11186 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2816 2834 31.39436 287.024787 159.2095735 2.201969179 0.067318 8 76 3610 Val1 ValAAC_i tRNA yes 274 45 57 79.342219 285.716636 182.5294275 2.261332892 0.404361 8 77 1391 Leu1 LeuCAA_i tRNA/intron no 315 25 i4 41.685268 304.959998 173.322633 2.238855278 0.051694 8 78 15096 MT_COX 2; ORF1 ORF2exon2 yes 2427 2041 2063 30.965651 303.652558 167.3091045 2.223519575 -0.050727 8 79 15136 MT_Phe 3_flank no 265 226 254 30.828502 343.448967 187.1387345 2.272163688 -0.325867 8 80 3127 Ser4 SerGCT tRNA yes 301 i4 39 34.850199 330.96821 182.9092045 2.262235561 -0.193509 8 81 14704 MT_Thr2 tRNA yes 276 136 152 36.739196 303.734609 170.2369025 2.231053709 0.050448 8 82 17118 YHR010W intron no 661 81 97 55.181167 303.883011 179.532089 2.254142084 0.119111 8 83 1356 Ile3 IleTAT_ii 3_flank no 333 42.441942 270.749273 156.5956075 2.194779576 0.385619 8 84 4422 telomerase RNA telomerase yes 1501 1146 1167 27.880349 329.768962 178.8246555 2.252427397 -0.312236 8 85 19085 YOR293W intron no 537 461 482 31.686461 311.93491 171.8106855 2.235050171 -0.076651 8 86 9607 RUF3 RUF3/3_flank no 631 31.382612 300.680506 166.031559 2.220190646 -0.01865 8 87 14965 MT_COX 2; ORF1 5_flank no 2427 76 95 31.009807 318.056209 174.533008 2.241877574 -0.134566 8 88 9948 RUF5-1 RUF5-1 yes 975 546 562 34.458962 254.693083 144.5760225 2.160096272 0.384614 8 89 13900 MT_COB intronic/exon3 no 7308 2686 2705 30.054497 287.266766 158.6606315 2.200469179 0.015013 8 90 6542 snR46 3_flank no 397 31.416936 361.534606 196.475771 2.293309002 -0.449795 8 91 21593 copy of SH6254 no 551 34.622877 287.076094 160.8494855 2.206419676 0.165283 8 92 9999 RUF5-1 3_flank no 975 30.526556 319.344717 174.9356365 2.24287829 -0.158411 8 93 19083 YOR293W intron no 537 421 438 28.497196 259.979607 144.2384015 2.159080901 0.05686 8 94 8356 snoRNA cluster4 3_flank no 638 566 583 43.061631 303.307553 173.184592 2.238509251 0.071224 8 95 16821 YGL178W intron no 740 201 217 43.375048 287.261732 165.31839 2.218321167 0.222193 8 96 1883 Leu9 LeuTAG_ii 3_flank no 301 57.077148 258.320025 157.6985865 2.197827801 0.554576 8 97 4177 telomerase RNA 5_flank no 1501 38.171673 314.291377 176.231525 2.246083599 -0.040738 8 98 11569 "rRNA(18S,5.8S,25S)" 25S yes 7956 4731 4748 25860.66775 7551.30879 16705.98827 4.222872172 1.227306 8 99 18502 YMR194W intron no 563 401 417 32.897019 273.302943 153.099981 2.184975137 0.206333 8 100 8101 snoRNA cluster 3; 5_flank no 743 16 33 37.536274 318.529057 178.0326655 2.250499694 -0.079692 8 101 15890 YDL082W intron no 465 341 358 34.029001 326.534827 180.281914 2.25595216 -0.160162 8 102 12306 5S rRNA NTS2 no 1420 486 500 38.578511 304.309216 171.4438635 2.234121945 0.050413 8 103 10230 RUF6 RUF6 yes 1251 996 1015 30.543525 278.440294 154.4919095 2.188905741 0.081648 8 104 20229 YDR129C spliced yes 40 21 40 32.821637 285.022955 158.922296 2.201184831 0.126629 9 2 20337 YER074W-A spliced yes 40 13 29 31.356555 445.172348 238.2644515 2.377059251 -1.026469 9 3 295 Arg4 ArgCCT tRNA/3_flank no 272 31.340994 294.170064 162.755529 2.211535751 0.020268 9 4 8653 LSR1 / U2 RNA 5_flank no 1375 44.130558 290.730649 167.4306035 2.223834843 0.190881 9 5 3651 Val2 ValAAC_ii 5_flank/tRNA no 274 35.422378 286.286141 160.8542595 2.206432566 0.181545 9 6 12912 MT_COX1 ai2 no 13084 2881 2900 28.90952 300.694762 164.802141 2.216962849 -0.106172 9 7 15863 YDL079C intron no 392 181 201 584.78083 1743.083499 1163.932165 3.06592767 -1.109809 9 8 9202 snR7 U5 RNA 3_flank no 415 32.630854 287.65959 160.145222 2.204513986 0.103588 9 9 982 Gly2 GlyCCC_ii 5_flank no 272 30.275199 308.959442 169.6173205 2.229470198 -0.106173 9 10 20202 YDR025W spliced yes 40 13 29 165.462063 395.889111 280.675587 2.44820464 0.159614 9 11 19529 CBP1 1.2 CBP1 1.2 yes 401 81 98 29.748764 282.849521 156.2991425 2.193956595 0.019761 9 12 17350 YIL018W intron no 500 401 420 31.58312 296.034429 163.8087745 2.214337161 0.016672 9 13 16563 YER133W intron no 625 421 437 76.016866 344.313061 210.1649635 2.322560317 -0.066581 9 14 11394 "rRNA(18S,5.8S,25S)" 25S yes 7956 3856 3869 48636.89429 27841.77033 38239.33231 4.5825103 -0.166485 9 15 1163 His1 HisGTG tRNA yes 272 35 48 35.824234 294.093581 164.9589075 2.217375772 0.119722 9 16 18084 YLR344W intron no 547 441 458 63.994255 352.317893 208.156074 2.318389088 -0.202507 9 17 1307 Ile3 IleTAT_ii 5_flank no 333 53.34612 335.778446 194.562283 2.289058654 -0.149294 9 18 13508 MT_COX1 intronic no 13084 11821 11838 33.021208 285.314897 159.1680525 2.201855903 0.131075 9 19 5668 snR34 snR34 yes 750 261 280 29.225224 294.789134 162.007179 2.20953426 -0.062883 9 20 10087 RUF6 RUF6 yes 1251 281 298 29.573089 267.724257 148.648673 2.172161037 0.083741 9 21 3174 Ser5 SerTGA 5_flank/tRNA no 282 32.030429 296.025563 164.027996 2.214917979 0.031412 9 22 92 Ala2 AlaTGC 3_flank no 273 30.100559 297.950017 164.025288 2.214910809 -0.045409 9 23 14367 MT_ORF9; ORF10 ORF9/intergenic no 578 271 295 28.120735 312.346582 170.2336585 2.231045433 -0.203335 9 24 8821 LSR1 / U2 RNA U2 yes 1375 746 758 70.820799 310.492209 190.656504 2.280251625 0.151648 9 25 14652 MT_21S 21S_rRNA4 yes 4639 3991 4007 32.993581 275.092012 154.0427965 2.187641394 0.197381 9 26 14645 MT_21S intronic no 4639 3886 3905 30.932 314.492357 172.7121785 2.237322962 -0.116442 9 27 14423 MT_21S 21S_rRNA3 yes 4639 556 575 31.026217 286.401864 158.7140405 2.200615348 0.059 9 28 4457 telomerase RNA 3_flank no 1501 35.521743 294.698136 165.1099395 2.217773218 0.111136 9 29 5262 snR30 snR30 yes 801 161 178 30.866276 298.688693 164.7774845 2.216897869 -0.023737 9 30 10553 RUF8 RUF8 yes 1151 691 708 37.322414 297.464916 167.393665 2.223739018 0.108517 9 31 19265 YPL143W intron no 625 181 200 32.535071 325.353362 178.9442165 2.252717666 -0.169793 9 32 14346 MT_VAR1 3_flank no 1467 1396 1408 63.005045 285.055173 174.030109 2.240624392 0.324028 9 33 17830 YKR094C exon/intron no 468 41 60 29.704169 301.965318 165.8347435 2.219675523 -0.083898 9 34 18878 YNR053C intron no 631 541 561 31.568873 273.8368 152.7028365 2.183847104 0.155152 9 35 1130 Gly4 GlyTCC 3_flank no 272 31.305166 276.301716 153.803441 2.186966052 0.130186 9 36 7580 snR189 5_flank no 389 31.070141 287.964923 159.517532 2.202808422 0.050457 9 37 7023 snR62 5_flank no 300 32.949527 307.63293 170.2912285 2.231192279 -0.026146 9 38 7882 snoRNA cluster1 snR73 yes 1574 1206 1218 30.643276 270.364752 150.504014 2.177548083 0.125906 9 39 12845 MT_COX1 ai1 no 13084 1876 1895 30.429465 349.509726 189.9695955 2.278684098 -0.374492 9 40 11237 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3071 3087 6370.099757 5334.236804 5852.168281 3.767316806 0.097886 9 41 1205 Ile1 IleAAT 5_flank/tRNA no 274 34.06508 281.333105 157.6990925 2.197829194 0.18945 9 42 17763 YKL157W intron no 483 401 416 40.939519 306.576522 173.7580205 2.23994486 0.035096 9 43 4488 U3b (snR17b) 5_flank/U3b no 662 29.627862 292.511402 161.069632 2.207013666 -0.031293 9 44 449 Asp1 AspGTC_i tRNA/3_flank no 271 31.547206 309.344792 170.445999 2.231586811 -0.065492 9 45 12159 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7681 7699 41.624665 383.196182 212.4104235 2.327175825 -0.563958 9 46 7745 snoRNA cluster1 intergenic no 1574 521 538 31.708264 316.705123 174.2066935 2.241064838 -0.113872 9 47 20994 YML073C spliced yes 40 17 33 38.111836 271.595566 154.853701 2.189921589 0.34203 9 48 21784 copy of SH14439 no 4639 32.417836 299.638549 166.0281925 2.22018184 0.021631 9 49 11967 "rRNA(18S,5.8S,25S)" 25S yes 7956 6721 6738 30487.88927 17250.54581 23869.21754 4.377838183 0.055494 9 50 5571 snR33 snR33 yes 383 141 158 34.539444 293.887386 164.213415 2.215408633 0.106333 9 51 883 Glu3 GluTTC_ii 5_flank no 272 36.123647 276.897964 156.5108055 2.194544327 0.272063 9 52 13026 MT_COX1 ai2 no 13084 4591 4610 29.959124 303.889903 166.9245135 2.222520119 -0.086671 9 53 4039 SRP SRP yes 875 86 102 32.330409 282.342614 157.3365115 2.196829517 0.128279 9 54 3698 Val3 ValCAC 5_flank no 273 34.586315 315.544871 175.065593 2.243200799 -0.068828 9 55 12074 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7256 7273 34.550244 312.902837 173.7265405 2.239866171 -0.048481 9 56 6598 snR47 snR47/3_flank no 299 43.265788 288.364594 165.815191 2.219624316 0.211257 9 57 18065 YLR344W intron no 547 61 80 38.768141 296.21833 167.4932355 2.223997272 0.126154 9 58 7461 snR71 5_flank no 290 36.477173 279.837318 158.1572455 2.199089093 0.25 9 59 4794 snR5 snR5 yes 404 141 162 31.991738 308.972702 170.48222 2.231679092 -0.0491 9 60 4062 SRP SRP yes 875 201 218 53.487836 320.037879 186.7628575 2.27129051 -0.02422 9 61 19427 YPR132W intron no 465 261 278 33.655678 308.042739 170.8492085 2.232612971 -0.020656 9 62 8526 snR19 / U1 RNA U1 yes 868 126 142 41.752074 280.987814 161.369944 2.207822648 0.280412 9 63 21517 copy of SH3112 no 301 30.760018 308.299344 169.529681 2.229245745 -0.085646 9 64 11457 "rRNA(18S,5.8S,25S)" 25S yes 7956 4171 4184 49.0879 265.675828 157.381864 2.196954685 0.453241 9 65 18648 YNL112W intron no 1102 141 160 32.257392 301.279793 166.7685925 2.222114263 0.006393 9 66 13231 MT_COX1 ai4 no 13084 7666 7683 40.435156 277.965735 159.2004455 2.201944279 0.307699 9 67 6786 snR50 3_flank no 290 36.488534 299.674139 168.0813365 2.225519493 0.080874 9 68 20643 YHR203C spliced yes 40 9 21 87.878544 264.650868 176.264706 2.246165361 0.636081 9 69 15696 YBR220C intron no 521 81 97 35.10116 301.629978 168.365569 2.226253282 0.048747 9 70 7466 snR71 5_flank no 290 31.209588 299.285216 165.247402 2.21813464 -0.01586 9 71 13783 MT_COB intronic no 7308 931 953 29.306282 330.064104 179.685193 2.25451229 -0.261797 9 72 2921 Pro8 ProTGG_vii 3_flank no 305 29.415293 272.348174 150.8817335 2.178636665 0.052626 9 73 4321 telomerase RNA telomerase yes 1501 641 660 31.55448 309.18777 170.371125 2.231395991 -0.064317 9 74 17066 YGR214W intron no 555 461 482 31.45493 300.110937 165.7829335 2.21953982 -0.012756 9 75 6655 snR48 snR48/3_flank no 313 33.408873 314.801233 174.105053 2.240811376 -0.077339 9 76 12954 MT_COX1 ai2 no 13084 3511 3537 31.082573 309.292534 170.1875535 2.230927795 -0.080675 9 77 16199 YDR381C intron no 294 161 177 51.909852 316.968271 184.4390615 2.265852904 -0.008158 9 78 7838 snoRNA cluster1 snR74 yes 1574 986 1003 32.754178 323.347435 178.0508065 2.250543945 -0.15173 9 79 6261 snR42 snR42 yes 551 86 103 32.549853 282.834807 157.69233 2.19781057 0.132136 9 80 1082 Gly3 GlyGCC 3_flank no 271 36.463701 269.408387 152.936044 2.184509852 0.340246 9 81 11716 "rRNA(18S,5.8S,25S)" 25S yes 7956 5466 5481 48.544283 280.764204 164.6542435 2.216572928 0.300138 9 82 20254 YDR381W spliced yes 40 9 26 31.909353 306.343759 169.126556 2.228211805 -0.035624 9 83 21559 copy of SH4989 no 445 35.711182 298.373994 167.042588 2.22282721 0.082703 9 84 17819 YKR057W intron no 422 241 257 33.433995 279.668031 156.551013 2.194655882 0.180852 9 85 9164 snR7 U5 RNA U5 yes 415 91 107 37.132628 274.656384 155.894506 2.19283081 0.303557 9 86 11323 "rRNA(18S,5.8S,25S)" 25S yes 7956 3501 3518 46637.6047 7620.207527 27128.90611 4.433432283 1.933175 9 87 10893 "rRNA(18S,5.8S,25S)" 18S yes 7956 1351 1370 27137.4434 7538.801455 17338.12243 4.239002065 1.288948 9 88 19660 SIR1 2.2 SIR1 2.2 yes 401 321 333 81.097257 266.557378 173.8273175 2.240118028 0.584712 9 89 11714 "rRNA(18S,5.8S,25S)" 25S yes 7956 5456 5469 173.613607 309.262954 241.4382805 2.382806129 0.711412 9 90 4597 snR3 5_flank no 395 38.427599 380.456813 209.442206 2.321064204 -0.564647 9 91 12486 5S rRNA NTS1 no 1420 1386 1410 39.690057 349.822765 194.756411 2.289491763 -0.331753 9 92 21712 copy of SH11292 no 7956 33.794716 305.852491 169.8236035 2.229998052 -0.001315 9 93 15173 MT_COX3 5_flank no 1010 16 38 73.516244 367.593393 220.5548185 2.34351655 -0.239123 9 94 15239 MT_fMet 5_flank no 274 16 42 46.281127 297.174305 171.727716 2.234840394 0.137528 9 95 11166 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2716 2736 88.427876 376.953962 232.690919 2.366779435 -0.192905 9 96 1195 Ile1 IleAAT 5_flank no 274 60.4138 349.658685 205.0362425 2.311830634 -0.207959 9 97 10872 "rRNA(18S,5.8S,25S)" 18S yes 7956 1246 1262 48220.52263 12116.90924 30168.71593 4.479556826 1.203598 9 98 13552 MT_COX1 intronic no 13084 12481 12498 35.95534 332.433236 184.194288 2.265276158 -0.202999 9 99 14055 MT_COB bi4 no 7308 5011 5039 30.869142 333.465046 182.167094 2.26046993 -0.252416 9 100 6471 snR45 3_flank no 372 33.501247 317.991111 175.746179 2.244885892 -0.101111 9 101 3844 RNaseP RNaseP yes 569 186 201 42.256209 276.773199 159.514704 2.202800722 0.323734 9 102 18260 YML056C intron no 508 81 101 33.466218 290.145673 161.8059455 2.208994476 0.114141 9 103 14176 MT_COB intronic no 7308 6826 6848 30.635372 270.028339 150.3318555 2.177051018 0.127163 9 104 10809 "rRNA(18S,5.8S,25S)" 18S yes 7956 931 948 77.374579 347.295175 212.334877 2.327021335 -0.078279 10 2 9572 RUF3 RUF3 yes 631 246 262 48.249115 450.315617 249.282366 2.396691558 -0.926136 10 3 20727 YJL177W spliced yes 40 17 33 39.550119 301.37664 170.4633795 2.231631094 0.079741 10 4 14477 MT_21S 21S_rRNA3 yes 4639 1366 1388 28.875695 325.579349 177.227522 2.248531165 -0.252065 10 5 7505 snR71 3_flank no 290 33.019409 282.91293 157.9661695 2.198564087 0.146583 10 6 15843 YDL075W intron no 521 301 318 30.807658 312.362827 171.5852425 2.234479933 -0.108139 10 7 4293 telomerase RNA telomerase yes 1501 501 519 32.754723 302.957518 167.8561205 2.224937181 0.009246 10 8 20348 YER102W spliced yes 40 9 26 34.652008 299.968717 167.3103625 2.22352284 0.057063 10 9 9719 RUF4 RUF4 yes 988 371 387 28.261112 267.526564 147.893838 2.169950079 0.010214 10 10 11018 "rRNA(18S,5.8S,25S)" 18S yes 7956 1976 1994 84.600376 346.676877 215.6386265 2.333726557 -0.025866 10 11 3339 Thr3 ThrTGT_i tRNA yes 272 41 58 34.024004 288.048991 161.0364975 2.206924316 0.144754 10 12 21221 YOR182C spliced yes 40 5 24 29.822996 310.859063 170.3410295 2.231319268 -0.133174 10 13 6964 snR60 5_flank no 304 39.893884 294.947277 167.4205805 2.223808843 0.140783 10 14 15101 MT_COX 2; ORF1 ORF2exon2 yes 2427 2116 2137 29.805548 305.928261 167.8669045 2.224965082 -0.104346 10 15 631 Gln2 GlnTTG_i 5_flank no 272 30.972257 301.425635 166.198946 2.220628265 -0.036951 10 16 8628 snR19 / U1 RNA U1 yes 868 636 652 59.097758 342.899126 200.998442 2.303192691 -0.167378 10 17 13616 MT_ATP6 5_flank no 980 46 70 59.75798 362.934647 211.3463135 2.324994677 -0.304437 10 18 14169 MT_COB intronic no 7308 6721 6749 28.834939 325.248537 177.041738 2.248075664 -0.251668 10 19 13762 MT_COB intronic no 7308 616 637 29.18108 294.773492 161.977286 2.209454118 -0.065161 10 20 103 Ala2 AlaTGC 3_flank no 273 31.631386 284.044349 157.8378675 2.198211205 0.09439 10 21 5006 snR10 snR10 yes 445 61 73 67.873639 328.304579 198.089109 2.296860599 -0.003741 10 22 4116 SRP SRP yes 875 471 490 29.976127 299.137746 164.5569365 2.216316194 -0.057059 10 23 16780 YGL103W intron no 611 281 298 50.047329 342.666172 196.3567505 2.293045836 -0.220799 10 24 15420 YBL059W 3_exon no 169 121 137 34.870802 293.757815 164.3143085 2.215675383 0.111376 10 25 8897 LSR1 / U2 RNA U2 yes 1375 1126 1142 35.149827 272.957516 154.0536715 2.187672053 0.277829 10 26 9653 RUF4 RUF4 yes 988 41 57 28.651026 317.770338 173.210682 2.238574672 -0.215523 10 27 14057 MT_COB bi4 no 7308 5041 5065 31.032163 325.585285 178.308724 2.251172592 -0.191137 10 28 2988 Ser2 SerAGA_ii 5_flank no 282 33.316054 307.281358 170.298706 2.231211348 -0.01874 10 29 8562 snR19 / U1 RNA U1 yes 868 306 321 37.725506 291.177143 164.4513245 2.216037376 0.165763 10 30 17742 YKL156W 3_exon no 450 421 433 132.143857 385.350882 258.7473695 2.412875943 0.035845 10 31 18253 YML034W intron/exon no 226 161 180 32.707887 290.799014 161.7534505 2.208853554 0.086065 10 32 9894 RUF5-1 RUF5-1 yes 975 276 291 41.216807 298.488978 169.8528925 2.230072947 0.11041 10 33 2269 Phe2 PheGAA_ii 5_flank no 292 29.913258 273.561037 151.7371475 2.181091916 0.072792 10 34 13441 MT_COX1 intronic no 13084 10816 10835 29.650048 310.767323 170.2086855 2.230981718 -0.138703 10 35 21589 copy of SH6250 no 551 33.695972 294.348351 164.0221615 2.214902531 0.092222 10 36 19156 YPL075W intron no 851 641 658 37.708027 303.068442 170.3882345 2.231439603 0.059745 10 37 4352 telomerase RNA telomerase yes 1501 796 817 33.209095 324.931015 179.070055 2.253022967 -0.158093 10 38 6948 snR58 3_flank no 296 35.072404 280.481875 157.7771395 2.198044078 0.225459 10 39 1665 Leu5 LeuCAA_v 3_flank no 315 32.725837 315.853243 174.28954 2.241271324 -0.094137 10 40 6546 snR46 3_flank no 397 30.399476 302.824503 166.6119895 2.22170625 -0.064968 10 41 3818 RNaseP RNaseP yes 569 56 68 92.716333 310.512782 201.6145575 2.304521887 0.281984 10 42 4996 snR10 snR10 yes 445 11 27 58.509155 310.150877 184.330016 2.265596061 0.083639 10 43 15800 YDL061C intron no 509 141 162 29.710016 311.882252 170.796134 2.232478036 -0.143187 10 44 11038 "rRNA(18S,5.8S,25S)" 18S yes 7956 2076 2091 43.68321 312.524411 178.1038105 2.250673211 -0.008846 10 45 3547 Tyr2 TyrGTA_ii tRNA yes 289 6 20 61.873138 334.052336 197.962737 2.29658345 -0.084907 10 46 16277 YDR447C intron no 414 221 235 31.677248 343.449164 187.563206 2.273147647 -0.314623 10 47 4475 U3b (snR17b) 5_flank no 662 33.961796 298.351385 166.1565905 2.220517572 0.062093 10 48 616 Gln1 GlnCTG 3_flank no 272 34.371195 283.361982 158.8665885 2.20103257 0.185561 10 49 21187 YOL047C spliced yes 40 25 39 43.249934 287.08293 165.166432 2.217921787 0.223669 10 50 2313 Phe2 PheGAA_ii 3_flank no 292 33.305754 307.046597 170.1761755 2.230898759 -0.016979 10 51 10830 "rRNA(18S,5.8S,25S)" 18S yes 7956 1036 1054 150.01051 338.660702 244.335606 2.387986759 0.406702 10 52 2737 Pro5 ProTGG_iv intron/tRNA no 303 i30 48 115.314605 285.068305 200.191455 2.301445536 0.604974 10 53 5397 snR31 snR31 yes 425 51 66 54.155622 297.000577 175.5780995 2.244470344 0.173329 10 54 12626 MT_15S 15S yes 1848 1141 1160 30.105899 300.334752 165.2203255 2.218063473 -0.059901 10 55 17555 YJL189W intron no 486 101 120 58.800954 311.560608 185.180781 2.267595911 0.073376 10 56 18623 YNL096C intron no 445 81 98 32.308419 295.55902 163.9337195 2.214668293 0.04334 10 57 657 Gln2 GlnTTG_i tRNA/3_flank no 272 34.475462 324.093512 179.284487 2.253542713 -0.136219 10 58 13901 MT_COB intronic/exon3 no 7308 2701 2718 30.055396 301.564084 165.80974 2.219610038 -0.069175 10 59 15177 MT_COX3 5_flank/cox3 no 1010 76 102 29.976908 329.604307 179.7906075 2.254767 -0.235781 10 60 7308 snR66 snR66 yes 286 31 47 34.167458 283.00082 158.584139 2.200259749 0.181701 10 61 18905 YOL120C intron no 547 301 319 30.654239 311.503887 171.079063 2.233196863 -0.108282 10 62 20086 YCR097W spliced yes 40 17 39 29.249121 327.046952 178.1480365 2.25078104 -0.246928 10 63 3855 RNaseP RNaseP yes 569 241 253 115.956711 305.899097 210.927904 2.324134037 0.448549 10 64 224 Arg3 ArgCCG 5_flank no 272 30.635892 344.336039 187.4859655 2.272968764 -0.334837 10 65 10497 RUF8 RUF8 yes 1151 411 427 61.576881 316.016283 188.796582 2.275994128 0.053721 10 66 16873 YGL187C intron no 442 321 337 30.341973 317.685034 174.0135035 2.240582951 -0.15515 10 67 19844 Negative Control no 60 NA #VALUE! 30.452387 273.810781 152.131584 2.182219387 0.099332 10 68 12430 5S rRNA NTS2 no 1420 1106 1122 39.042185 299.903268 169.4727265 2.229099817 0.092254 10 69 17342 YIL018W intron no 500 241 258 33.096751 325.845678 179.4712145 2.253994802 -0.166443 10 70 13697 MT_ORF 5 3_flank no 331 301 320 29.154022 307.216867 168.1854445 2.225788407 -0.135164 10 71 8445 snoRNA cluster 5 snR128 yes 586 391 405 71.488263 281.098584 176.2934235 2.246236112 0.403044 10 72 2430 Phe5 PheGAA_v 5_flank no 291 31.564553 299.846655 165.705604 2.219337196 -0.007501 10 73 4118 SRP SRP yes 875 481 493 44.40046 276.601638 160.501049 2.205477875 0.329986 10 74 14171 MT_COB intronic no 7308 6751 6773 31.396606 317.286478 174.341542 2.241400883 -0.122494 10 75 19741 Negative Control no 60 NA #VALUE! 54.560419 278.803761 166.68209 2.221888937 0.342061 10 76 12527 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 301 313 33.031862 271.150563 152.0912125 2.182104122 0.225162 10 77 15201 MT_COX3 cox3 no 1010 436 452 53.660367 297.461945 175.561156 2.244428432 0.166975 10 78 20429 YGL033W spliced yes 40 13 29 38.683566 322.871048 180.777307 2.257143913 -0.114773 10 79 15520 YBR048W intron no 611 361 382 30.176434 325.226954 177.701694 2.249691568 -0.204062 10 80 2643 Pro3 ProTGG_ii 3_flank no 303 32.989815 297.186709 165.088262 2.217716195 0.055022 10 81 9063 snR14 / U4 RNA 5_flank no 360 29.707197 309.795232 169.7512145 2.22981289 -0.130924 10 82 15132 MT_Phe tRNA/3_flank no 265 166 187 29.46842 333.810417 181.6394185 2.259210103 -0.276816 10 83 1398 Leu1 LeuCAA_i intron/tRNA no 315 i23 42 41.162821 271.952521 156.557671 2.194674352 0.370435 10 84 18492 YMR194W intron no 563 201 217 44.783575 297.292479 171.038027 2.233092678 0.131752 10 85 16982 YGR034W 3_exon no 454 421 437 78.819605 346.913228 212.8664165 2.328107149 -0.065701 10 86 7736 snoRNA cluster1 intergenic no 1574 476 495 28.453083 311.772136 170.1126095 2.230736507 -0.187676 10 87 15376 YBL027W intron no 484 281 295 51.211601 280.450044 165.8308225 2.219665255 0.310962 10 88 1472 Leu2 LeuCAA_ii 3_flank no 314 31.560403 313.423957 172.49218 2.236769411 -0.09007 10 89 17039 YGR183C intron no 313 221 235 53.60322 310.482884 182.043052 2.260174108 0.054882 10 90 20834 YKR095W-A spliced yes 40 9 25 45.407514 322.89604 184.151777 2.265175914 -0.090619 10 91 10603 RUF8 RUF8/3_flank no 1151 41.152372 321.053617 181.1029945 2.257925631 -0.091202 10 92 6781 snR50 snR50/3_flank no 290 33.534107 349.810152 191.6721295 2.282558968 -0.351727 10 93 10770 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 736 749 84.386188 341.088027 212.7371075 2.32784325 0.010879 10 94 9876 RUF5-1 RUF5-1 yes 975 186 203 31.635559 307.369196 169.5023775 2.229175794 -0.050776 10 95 16531 YER131W intron no 461 241 259 35.536138 317.115202 176.32567 2.246315543 -0.072262 10 96 1879 Leu9 LeuTAG_ii 3_flank no 301 28.766566 306.077786 167.422176 2.223812982 -0.142296 10 97 16792 YGL103W intron no 611 521 543 36.861419 274.740908 155.8011635 2.192570697 0.299762 10 98 3316 Thr3 ThrTGT_i 5_flank no 272 33.893897 303.590014 168.7419555 2.227223078 0.018248 10 99 20427 YGL033W spliced yes 40 5 20 52.414506 294.865079 173.6397925 2.239649258 0.184352 10 100 21786 copy of SH14441 no 4639 29.410721 321.397479 175.4041 2.244039741 -0.209092 10 101 10721 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 491 512 29.917007 308.818032 169.3675195 2.228830127 -0.117759 10 102 855 Glu2 GluTTC_i tRNA yes 272 41 54 1514.654571 981.665089 1248.15983 3.096270201 1.028493 10 103 15320 YAL003W intron no 466 201 216 32.695919 261.537766 147.1168425 2.167662395 0.270849 10 104 9389 RUF1 RUF1 yes 750 521 542 35.039231 367.306479 201.172855 2.303569379 -0.483277 11 2 448 Asp1 AspGTC_i tRNA yes 271 62 74 37.114187 579.309035 308.211611 2.488848996 -1.657327 11 3 4903 snR9 5_flank no 387 31.783626 266.811005 149.2973155 2.174051999 0.200297 11 4 21033 YMR125W spliced yes 40 5 22 372.616695 629.921646 501.2691705 2.700070995 0.073989 11 5 11946 "rRNA(18S,5.8S,25S)" 25S yes 7956 6616 6633 13294.74164 20134.96895 16714.8553 4.223102621 -1.217041 11 6 19274 YPL143W intron no 625 361 380 30.57274 300.434547 165.5036435 2.218807559 -0.044445 11 7 1083 Gly3 GlyGCC 3_flank no 271 61.809841 333.169252 197.4895465 2.295544113 -0.078579 11 8 13354 MT_COX1 intronic no 13084 9511 9530 32.480541 290.171083 161.325812 2.20770386 0.082762 11 9 21326 YPR028W spliced yes 40 21 38 28.267612 284.345062 156.306337 2.193976586 -0.066613 11 10 10748 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 626 642 84.896321 345.572644 215.2344825 2.33291185 -0.016498 11 11 8234 snoRNA cluster 3; 3_flank no 743 681 698 34.245732 289.893978 162.069855 2.209702244 0.136608 11 12 6921 snR58 5_flank no 296 34.169667 280.49767 157.3336685 2.196821669 0.198126 11 13 984 Gly2 GlyCCC_ii 5_flank no 272 32.096777 289.057495 160.577136 2.205683708 0.07743 11 14 10457 RUF8 RUF8 yes 1151 211 230 30.093331 284.651552 157.3724415 2.196928683 0.029198 11 15 19147 YPL075W intron no 851 461 480 32.261576 296.046595 164.1540855 2.215251696 0.03879 11 16 13321 MT_COX1 ai5a no 13084 9016 9035 36.611629 338.396149 187.503889 2.27301028 -0.251021 11 17 17817 YKR057W intron no 422 201 216 36.935336 276.328399 156.6318675 2.194880126 0.286353 11 18 17657 YKL002W exon/intron no 168 41 61 30.985284 316.288541 173.6369125 2.239642055 -0.125131 11 19 12249 5S rRNA NTS2 no 1420 201 213 39.791458 290.130583 164.9610205 2.217381335 0.186554 11 20 8596 snR19 / U1 RNA U1 yes 868 476 493 33.69537 291.129713 162.4125415 2.210619562 0.115032 11 21 13958 MT_COB bi3 no 7308 3556 3575 29.63328 309.036133 169.3347065 2.228745979 -0.129009 11 22 17410 YIL106W exon/intron no 185 41 60 28.753183 297.610263 163.181723 2.212671514 -0.100867 11 23 2262 Phe2 PheGAA_ii 5_flank no 292 32.237517 307.828106 170.0328115 2.230532736 -0.036759 11 24 17423 YIL111W intron no 188 121 137 120.411546 350.09872 235.255133 2.371539108 0.174445 11 25 15344 YBL018C 5_exon no 175 21 39 32.767935 303.422192 168.0950635 2.22555496 0.005626 11 26 3773 Val4 ValTAC 3_flank no 274 30.777003 303.604098 167.1905505 2.223211728 -0.056814 11 27 10430 RUF8 RUF8 yes 1151 76 93 33.191288 273.89853 153.544909 2.186235421 0.211625 11 28 9952 RUF5-1 RUF5-1 yes 975 566 582 76.563882 334.953713 205.7587975 2.313358413 0.003017 11 29 4889 snR8 3_flank no 390 33.182099 291.149602 162.1658505 2.209959404 0.098878 11 30 6176 snR40 5_flank no 297 30.764858 297.514159 164.1395085 2.215213129 -0.019919 11 31 12539 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 481 496 32.759926 298.011614 165.38577 2.21849814 0.042617 11 32 664 Gln2 GlnTTG_i 3_flank no 272 34.694277 274.902395 154.798336 2.189766288 0.251135 11 33 3920 RNase MRP RNaseMRP yes 540 16 33 92.508501 367.955357 230.231929 2.362165552 -0.11072 11 34 21259 YPL079W spliced yes 40 5 22 40.661279 311.902331 176.281805 2.246207489 -0.013591 11 35 3416 Trp1 TrpCCA 5_flank no 306 29.573652 310.911068 170.24236 2.231067631 -0.142249 11 36 11168 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2726 2743 50.851107 299.707146 175.2791265 2.2437302 0.133918 11 37 18588 YNL050C intron no 191 101 118 31.299225 287.299595 159.29941 2.202214167 0.062386 11 38 4115 SRP SRP yes 875 466 483 31.085275 297.92575 164.5055125 2.216180456 -0.011645 11 39 4251 telomerase RNA telomerase yes 1501 291 309 32.951956 276.849129 154.9005425 2.190052939 0.18434 11 40 6640 snR48 snR48 yes 313 26 45 30.607751 318.910492 174.7591215 2.242439853 -0.153132 11 41 20650 YIL004C spliced yes 40 13 29 34.466951 309.026328 171.7466395 2.234888248 -0.018672 11 42 21860 copy of SH18010 no 530 30.083506 304.442881 167.2631935 2.223400384 -0.085692 11 43 9393 RUF1 RUF1/3_flank no 750 153.696754 372.484367 263.0905605 2.420105266 0.225105 11 44 12358 5S rRNA NTS2 no 1420 746 763 35.737686 295.975116 165.856401 2.219732237 0.10296 11 45 5212 snR30 5_flank no 801 31.62701 268.438734 150.032872 2.176186423 0.184523 11 46 14197 MT_COB exon6 yes 7308 7141 7160 31.681593 310.640868 171.1612305 2.2334054 -0.068751 11 47 15833 YDL075W intron no 521 101 123 29.85078 298.752364 164.301572 2.215641719 -0.059062 11 48 18435 YMR142C intron no 502 201 218 32.201726 330.008007 181.1048665 2.25793012 -0.209163 11 49 12933 MT_COX1 ai2 no 13084 3196 3210 49.285026 272.831162 161.058094 2.206982555 0.380914 11 50 13953 MT_COB bi3 no 7308 3481 3502 30.984971 309.624736 170.3048535 2.231227025 -0.085936 11 51 17547 YJL177W intron no 417 341 365 31.3995 295.884284 163.641892 2.213894492 0.011517 11 52 4090 SRP SRP yes 875 341 355 91.167215 343.071767 217.119491 2.336698812 0.040954 11 53 10070 RUF6 RUF6 yes 1251 196 215 36.330448 300.535072 168.43276 2.226426565 0.071987 11 54 634 Gln2 GlnTTG_i 5_flank no 272 29.95234 326.220917 178.0866285 2.250631312 -0.217464 11 55 20732 YJL189W spliced yes 40 9 24 86.042285 294.901392 190.4718385 2.279830774 0.365299 11 56 3999 RNase MRP 3_flank no 540 36.643087 306.980348 171.8117175 2.235052779 0.021295 11 57 11065 "rRNA(18S,5.8S,25S)" 18S yes 7956 2211 2228 25096.62448 9279.06169 17187.84308 4.23522138 0.847936 11 58 19109 YOR312C intron no 507 401 420 32.307678 301.229343 166.7685105 2.22211405 0.008328 11 59 12436 5S rRNA NTS2 no 1420 1136 1160 30.087302 338.671387 184.3793445 2.265712267 -0.301325 11 60 11138 "rRNA(18S,5.8S,25S)" 18S yes 7956 2576 2591 27886.84154 8991.180731 18439.01114 4.265737627 1.02921 11 61 1525 Leu3 LeuCAA_iii tRNA yes 314 55 71 38.458773 278.888028 158.6734005 2.200504129 0.280302 11 62 1191 Ile1 IleAAT 5_flank no 274 29.478851 301.171644 165.3252475 2.218339182 -0.087003 11 63 3291 Thr2 ThrCGT tRNA yes 272 56 70 35.50055 283.808002 159.654276 2.203180555 0.203943 11 64 17761 YKL157W intron no 483 361 378 30.904908 303.075817 166.9903625 2.222691407 -0.049277 11 65 16281 YDR447C intron no 414 301 317 57.875839 276.721815 167.298827 2.223492896 0.376336 11 66 13582 MT_COX1 exon6 yes 13084 12931 12947 88.861739 330.95328 209.9075095 2.322027976 0.109536 11 67 21745 copy of SH12760 no 13084 41.049767 298.798624 169.9241955 2.230255222 0.107142 11 68 4741 snR4 3_flank no 386 74.151369 343.418815 208.785092 2.319699485 -0.072432 11 69 9732 RUF4 RUF4 yes 988 436 452 62.912476 298.931058 180.921767 2.257490821 0.201915 11 70 10261 RUF7 5_flank no 700 32.378598 303.957248 168.167923 2.22574316 -0.005981 11 71 1408 Leu1 LeuCAA_i tRNA/3_flank no 315 31.485745 321.675538 176.5806415 2.24694309 -0.155272 11 72 14693 MT_21S 3_flank no 4639 4606 4627 44.422782 358.409335 201.4160585 2.304094093 -0.371453 11 73 12147 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7621 7637 44.345046 298.256927 171.3009865 2.233759864 0.121467 11 74 18937 YOL121C intron no 490 401 422 31.335994 313.52378 172.429887 2.236612544 -0.097213 11 75 4366 telomerase RNA telomerase yes 1501 866 883 37.43277 324.167463 180.8001165 2.257198706 -0.128971 11 76 2698 Pro4 ProTGG_iii 3_flank no 302 32.90493 338.317096 185.611013 2.268603741 -0.261672 11 77 2198 Met2 MetCAT_ii 3_flank no 272 34.656512 326.736041 180.6962765 2.256949203 -0.158059 11 78 20611 YHR079C-A spliced yes 40 9 28 38.430737 370.903051 204.666894 2.311047599 -0.496847 11 79 2142 Met1 MetCAT_i 3_flank no 273 27.910278 321.937154 174.923716 2.242848695 -0.266861 11 80 4434 telomerase RNA telomerase yes 1501 1206 1220 29.666972 300.810013 165.2384925 2.218111224 -0.078149 11 81 14321 MT_VAR1 VAR1 yes 1467 1021 1049 29.399813 375.910469 202.655141 2.306757625 -0.568707 11 82 17650 YJR145C intron no 356 241 260 31.109757 313.818916 172.4643365 2.236699302 -0.106512 11 83 969 Gly1 GlyCCC_i 3_flank no 272 30.825789 296.010413 163.418101 2.213300159 -0.008523 11 84 12475 5S rRNA 5S yes 1420 1331 1345 12028.70427 3778.681557 7903.692913 3.897830058 1.44707 11 85 8166 snoRNA cluster 3; snR70 yes 743 341 355 64.229301 326.823155 195.526228 2.291205022 -0.015724 11 86 20502 YGR001C spliced yes 40 21 37 36.675952 306.14322 171.409586 2.234035106 0.029006 11 87 14847 MT_Asp 3_flank no 275 226 252 33.46501 317.330938 175.397974 2.244024573 -0.096423 11 88 19841 Negative Control no 60 NA #VALUE! 42.475783 282.371903 162.423843 2.210649782 0.268251 11 89 17744 YKL157W 5_exon no 483 21 37 38.243938 323.412314 180.828126 2.257265982 -0.120497 11 90 6824 snR52 snR52 yes 292 26 45 32.276597 310.275967 171.276282 2.233697227 -0.055832 11 91 9229 snR6 / U6 RNA U6 yes 312 16 31 42.757755 303.697817 173.227786 2.238617555 0.066688 11 92 2422 Phe4 PheGAA_iv 3_flank no 291 53.183173 287.509153 170.346163 2.231332356 0.254617 11 93 19711 Negative Control no 60 NA #VALUE! 35.04648 287.691476 161.368978 2.207820048 0.165026 11 94 2924 Pro8 ProTGG_vii 3_flank no 305 31.541389 311.709951 171.62567 2.234582246 -0.079708 11 95 18360 YMR033W intron/exon no 186 121 140 30.921198 299.582909 165.2520535 2.218146865 -0.027384 11 96 9580 RUF3 RUF3 yes 631 286 298 34.142244 276.341473 155.2418585 2.191008833 0.224773 11 97 10633 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 51 68 29.254357 279.656652 154.4555045 2.18880339 0.008839 11 98 15216 MT_COX3 cox3 no 1010 661 678 37.565073 328.34931 182.9571915 2.262349485 -0.164462 11 99 17272 YHR123W intron/exon no 191 141 158 34.523584 286.180904 160.352244 2.205075042 0.171812 11 100 1711 Leu6 LeuGAG 3_flank no 282 31.256249 292.333844 161.7950465 2.208965221 0.028969 11 101 8155 snoRNA cluster 3; intergenic/snR70 no 743 286 307 29.766831 292.45182 161.1093255 2.207120679 -0.023751 11 102 1283 Ile2 IleTAT_i tRNA yes 333 51 63 36.335872 254.382326 145.359099 2.162442222 0.442244 11 103 18306 YML073C intron no 515 321 340 30.442915 279.62821 155.0355625 2.190431329 0.070853 11 104 10584 RUF8 RUF8 yes 1151 846 863 33.797934 321.11611 177.457022 2.249093189 -0.121628 12 2 5931 snR36 snR36 yes 555 111 123 149.381181 666.431366 407.9062735 2.610560385 -0.972442 12 3 14699 MT_Thr2 5_flank no 276 61 89 28.431192 283.635585 156.0333885 2.19321754 -0.054321 12 4 9053 snR17a / U3a 3_flank no 690 38.81536 315.709898 177.262629 2.248617186 -0.051793 12 5 4687 snR4 5_flank no 386 32.493074 303.022287 167.7576805 2.224682413 0.003376 12 6 9641 RUF4 5_flank no 988 63.694614 350.072299 206.8834565 2.315725764 -0.188705 12 7 20413 YFR032C-A spliced yes 40 21 38 34.467012 303.863526 169.165269 2.228311204 0.022965 12 8 6257 snR42 snR42 yes 551 66 85 30.320931 266.761371 148.541151 2.171846785 0.127342 12 9 12286 5S rRNA NTS2 no 1420 386 402 97.284667 357.967189 227.625928 2.357221729 -0.016845 12 10 10514 RUF8 RUF8 yes 1151 496 519 28.259172 299.442258 163.850715 2.214448341 -0.135966 12 11 1154 His1 HisGTG 5_flank/tRNA no 272 34.434266 277.406214 155.92024 2.192902495 0.226586 12 12 20843 YLL050C spliced yes 40 21 37 61.383733 350.905912 206.1448225 2.314172432 -0.210063 12 13 18829 YNL302C intron no 651 401 417 34.446852 303.767615 169.1072335 2.228162185 0.023503 12 14 5637 snR34 snR34 yes 750 106 122 36.564477 330.162556 183.3635165 2.263312929 -0.182315 12 15 9147 snR7 U5 RNA U5 yes 415 6 23 35.644777 329.246285 182.445531 2.26113323 -0.176876 12 16 20362 YER131W spliced yes 40 13 30 82.899859 362.422785 222.661322 2.347644783 -0.141003 12 17 5880 snR35 3_flank no 740 41.321171 280.489001 160.905086 2.206569772 0.284429 12 18 3220 Thr1 ThrAGT 5_flank no 273 28.9637 303.679831 166.3217655 2.220949086 -0.120683 12 19 6712 snR49 snR49 yes 365 86 103 79.460947 347.663431 213.562189 2.329524364 -0.066389 12 20 3195 Ser5 SerTGA 3_flank no 282 42.220671 309.066365 175.643518 2.244632127 0.016824 12 21 19828 Negative Control no 60 NA #VALUE! 33.842499 294.838958 164.3407285 2.215745208 0.089903 12 22 18037 YLR333C 5_exon no 523 21 37 119.213119 380.245535 249.729327 2.397469547 -0.012183 12 23 15483 YBL092W exon/intron no 433 41 59 34.258859 298.508293 166.383576 2.221110454 0.0644 12 24 15873 YDL082W 5_exon no 465 1 17 58.801318 303.96178 181.381549 2.258593106 0.137296 12 25 21662 copy of SH9192 no 415 30.376266 288.728309 159.5522875 2.202903035 0.021998 12 26 5227 snR30 5_flank/snR30 no 801 37.297586 345.517111 191.4073485 2.281958607 -0.306637 12 27 5778 snR35 snR35 yes 740 76 98 35.25495 312.282724 173.768837 2.239971894 -0.035218 12 28 15743 YCR028C intron/exon no 183 121 140 33.082848 315.658465 174.3706565 2.241473403 -0.08812 12 29 8859 LSR1 / U2 RNA U2 yes 1375 936 952 119.087609 367.663947 243.375778 2.386277353 0.059398 12 30 14078 MT_COB bi4 no 7308 5356 5377 30.659007 316.591733 173.62537 2.239613184 -0.137949 12 31 3878 RNaseP RNaseP yes 569 356 368 76.383735 315.931712 196.1577235 2.292605413 0.142121 12 32 10990 "rRNA(18S,5.8S,25S)" 18S yes 7956 1836 1853 11464.03639 24374.67397 17919.35518 4.253322378 -1.715903 12 33 9845 RUF5-1 RUF5-1 yes 975 31 52 32.229828 307.878251 170.0540395 2.230586953 -0.03726 12 34 12904 MT_COX1 ai2 no 13084 2761 2779 32.016827 275.834832 153.9258295 2.187311503 0.161036 12 35 6816 snR52 5_flank/snR52 no 292 31.819786 319.530325 175.6750555 2.244710099 -0.134366 12 36 8291 snoRNA cluster4 intergenic no 638 241 257 42.401822 308.85446 175.628141 2.244594104 0.019315 12 37 11047 "rRNA(18S,5.8S,25S)" 18S yes 7956 2121 2138 34215.04554 28477.6344 31346.33997 4.496186839 -0.635297 12 38 13941 MT_COB bi3 no 7308 3301 3323 32.320517 305.618501 168.969509 2.227808342 -0.017891 12 39 9967 RUF5-1 RUF5-1 yes 975 641 657 33.157774 292.903024 163.030399 2.212268591 0.087057 12 40 5758 snR35 5_flank no 740 57.105282 288.956893 173.0310875 2.238124137 0.25966 12 41 814 Glu1 GluCTC 3_flank no 272 30.557004 319.006294 174.781649 2.242495832 -0.155418 12 42 10116 RUF6 RUF6 yes 1251 426 447 39.557747 335.576211 187.566979 2.273156384 -0.218182 12 43 4482 U3b (snR17b) 5_flank no 662 36.159081 299.802611 167.980846 2.225259764 0.07606 12 44 21859 copy of SH18009 no 530 37.941528 321.948022 179.944775 2.255139241 -0.108542 12 45 3684 Val3 ValCAC 5_flank no 273 39.806068 348.445602 194.125835 2.288083337 -0.320517 12 46 11907 "rRNA(18S,5.8S,25S)" 25S yes 7956 6421 6439 34074.48084 12406.57594 23240.52839 4.366245998 0.739175 12 47 318 Arg5 ArgTCT 5_flank no 272 46.029069 307.057787 176.543428 2.246851555 0.047008 12 48 5895 snR36 5_flank no 555 32.062906 313.049003 172.5559545 2.23692995 -0.080571 12 49 12799 MT_COX1 ai1 no 13084 1186 1203 36.532408 322.548082 179.540245 2.254161813 -0.117201 12 50 7102 snR63 snR63 yes 455 16 33 34.894028 284.999217 159.9466225 2.203975074 0.186457 12 51 14789 MT_Lys; Arg1; Gly 5_flank no 682 16 42 30.042406 311.004583 170.5234945 2.231784224 -0.126381 12 52 7353 snR68 5_flank/snR68 no 336 31.427529 291.342289 161.384909 2.207862922 0.040931 12 53 12704 MT_ORF 8 ORF8 yes 491 226 248 29.537381 310.976611 170.256996 2.231104966 -0.143918 12 54 9295 RUF1 RUF1 yes 750 51 68 31.871119 297.77456 164.8228395 2.217017392 0.01536 12 55 2669 Pro4 ProTGG_iii tRNA yes 302 11 29 35.262643 303.036489 169.149566 2.228270888 0.03915 12 56 18181 YLR448W intron no 484 401 419 29.927781 305.9247 167.9262405 2.225118565 -0.100051 12 57 16804 YGL137W intron no 300 161 180 32.19691 320.259414 176.228162 2.246075312 -0.13512 12 58 2032 Lys3 LysTTT_i 3_flank no 296 32.271682 286.003264 159.137473 2.201772457 0.102663 12 59 21329 YPR043W spliced yes 40 9 26 41.093254 308.101936 174.597595 2.242038257 0.02157 12 60 1348 Ile3 IleTAT_ii tRNA yes 333 61 73 94.764053 317.856238 206.3101455 2.314520585 0.23897 12 61 15572 YBR084C intron no 606 201 217 34.272092 307.201284 170.736688 2.232326853 -0.006381 12 62 4358 telomerase RNA telomerase yes 1501 826 844 29.665605 289.543093 159.604349 2.203044721 -0.015733 12 63 3508 Tyr1 TyrGTA_i tRNA/3_flank no 289 31.489215 324.866088 178.1776515 2.25085323 -0.179618 12 64 15108 MT_COX 2; ORF1 ORF2exon2 yes 2427 2221 2233 31.156012 245.32957 138.242791 2.140642493 0.279434 12 65 13713 MT_Glu (and 5_flank processing site for COB) 3_flank no 368 226 254 30.899868 350.94403 190.921949 2.280855859 -0.378261 12 66 20848 YLR048W spliced yes 40 17 33 66.548038 282.740341 174.6441895 2.242154141 0.362762 12 67 20952 YML024W spliced yes 40 1 20 125.52928 324.0809 224.80509 2.35180614 0.372645 12 68 8635 snR19 / U1 RNA 3_flank no 868 30.928807 324.472698 177.7007525 2.249689267 -0.184059 12 69 21370 Leu1_5 spliced yes 40 17 31 39.590351 262.014674 150.8025125 2.178408577 0.446544 12 70 5386 snR31 5_flank/snR31 no 425 33.445903 278.355728 155.9008155 2.192848387 0.189884 12 71 13300 MT_COX1 ai5a no 13084 8701 8723 31.456034 312.441672 171.948853 2.235399283 -0.086855 12 72 18564 YMR292W 3_exon no 182 161 180 33.634936 286.282772 159.958854 2.204008284 0.144069 12 73 13817 MT_COB bi2 no 7308 1441 1467 29.303151 354.796003 192.049577 2.283413355 -0.427208 12 74 18664 YNL112W intron no 1102 461 479 31.267634 315.063971 173.1658025 2.23846213 -0.108516 12 75 19359 YPL249C 3_exon no 337 321 336 37.340818 286.383279 161.8620485 2.209145032 0.202546 12 76 4424 telomerase RNA telomerase yes 1501 1156 1177 34.895885 304.959632 169.9277585 2.230264329 0.019187 12 77 12277 5S rRNA NTS2 no 1420 341 360 30.408106 301.884981 166.1465435 2.220491311 -0.058951 12 78 13464 MT_COX1 intronic no 13084 11161 11173 33.151209 261.860305 147.505757 2.168808971 0.290695 12 79 4329 telomerase RNA telomerase yes 1501 681 698 39.900261 336.292227 188.096244 2.274380123 -0.222801 12 80 18118 YLR388W 5_exon no 258 1 15 43.52337 277.371113 160.4472415 2.205332255 0.320403 12 81 18686 YNL112W intron no 1102 901 917 59.075767 289.478849 174.277308 2.241240843 0.265055 12 82 7533 snR79 snR79 yes 284 6 24 36.756538 312.193049 174.4747935 2.241732693 -0.02547 12 83 11988 "rRNA(18S,5.8S,25S)" 25S/3_ETS no 7956 6826 6848 34.440861 353.41662 193.9287405 2.287642177 -0.37795 12 84 3108 Ser4 SerGCT 5_flank no 301 41.826563 300.880709 171.353636 2.233893324 0.089452 12 85 15707 YBR220C intron no 521 301 317 41.428158 273.4185 157.423329 2.197069092 0.356001 12 86 567 Cys1 CysGCA 3_flank no 272 31.569227 289.917767 160.743497 2.206133412 0.054653 12 87 38 Ala1 AlaAGC 3_flank no 273 31.278879 266.632446 148.9556625 2.173057017 0.176316 12 88 273 Arg4 ArgCCT 5_flank no 272 29.125377 305.535476 167.3304265 2.223574918 -0.126086 12 89 19033 YOR234C exon/intron no 627 41 57 32.503552 302.084967 167.2942595 2.223481039 0.009417 12 90 20414 YGL030W spliced yes 40 1 18 35.80443 290.952374 163.378402 2.213194644 0.146031 12 91 6610 snR47 3_flank no 299 30.043328 286.916313 158.4798205 2.199973971 0.016061 12 92 14138 MT_COB intronic no 7308 6256 6284 29.808079 318.107274 173.9576765 2.240443598 -0.176133 12 93 21359 Ile2_3 spliced yes 40 1 15 47.545169 316.33485 181.9400095 2.259928213 -0.025128 12 94 16971 YGR034W intron no 454 201 220 29.737327 286.856209 158.296768 2.199472048 0.000433 12 95 953 Gly1 GlyCCC_i tRNA yes 272 16 33 31.773863 308.150924 169.9623935 2.230352838 -0.050897 12 96 14279 MT_VAR1 VAR1 yes 1467 391 403 32.234455 295.916007 164.075231 2.215043024 0.038724 12 97 11713 "rRNA(18S,5.8S,25S)" 25S yes 7956 5451 5466 76.778008 294.296571 185.5372895 2.268431208 0.317621 12 98 8419 snoRNA cluster 5 snR190 yes 586 261 278 29.793123 302.347096 166.0701095 2.220291472 -0.083102 12 99 15587 YBR084C intron no 606 501 517 30.448427 278.107578 154.2780025 2.188304007 0.078395 12 100 8719 LSR1 / U2 RNA U2 yes 1375 236 255 29.074564 299.1219 164.098232 2.215103902 -0.090343 12 101 8193 snoRNA cluster 3; intergenic no 743 476 497 31.558129 288.281617 159.919873 2.203902436 0.064706 12 102 698 Gln3 GlnTTG_ii tRNA yes 272 21 38 29.914989 285.92895 157.9219695 2.198442552 0.014 12 103 8912 LSR1 / U2 RNA 3_flank no 1375 34.314862 337.189613 185.7522375 2.268934054 -0.246957 12 104 15054 MT_COX 2; ORF1 ORF1exon1 yes 2427 1411 1437 34.537916 465.02971 249.783813 2.397564291 -1.120738 13 2 9714 RUF4 RUF4 yes 988 346 365 35.7709 671.250791 353.5108455 2.548402742 -2.034799 13 3 3067 Ser3 SerCGA tRNA yes 301 31 i12 56.753158 312.924346 184.838752 2.266793028 0.051551 13 4 7681 snoRNA cluster1 intergenic no 1574 201 218 92.466339 413.519235 252.992787 2.403108139 -0.37287 13 5 8398 snoRNA cluster 5 snR190 yes 586 156 173 32.373426 305.403534 168.88848 2.227600027 -0.015475 13 6 20768 YKL002W spliced yes 40 5 24 42.651958 379.005343 210.8286505 2.323929629 -0.528941 13 7 12934 MT_COX1 ai2 no 13084 3211 3226 38.482105 291.364161 164.923133 2.217281576 0.171644 13 8 3128 Ser4 SerGCT tRNA yes 301 i9 44 30.260698 302.734305 166.4975015 2.221407721 -0.069198 13 9 21177 YNR053C spliced yes 40 9 21 63.485526 310.859615 187.1725705 2.272242205 0.106215 13 10 10444 RUF8 RUF8 yes 1151 146 162 46.934472 322.167734 184.551103 2.266116645 -0.076535 13 11 3678 Val2 ValAAC_ii 3_flank no 274 28.368606 279.194926 153.781766 2.186904844 -0.036732 13 12 14257 MT_VAR1 5_flank no 1467 61 83 28.415555 323.076383 175.745969 2.244885373 -0.25463 13 13 15828 YDL075W 5_exon no 521 1 17 30.52774 289.420286 159.974013 2.204049439 0.022785 13 14 12503 MT_tRNA Pro 3_flank no 272 196 220 26.441132 305.322325 165.8817285 2.219798552 -0.265183 13 15 17998 YLR287C intron no 530 141 158 28.594951 294.139181 161.367066 2.207814903 -0.093819 13 16 4256 telomerase RNA telomerase yes 1501 316 333 30.80518 286.777222 158.791201 2.200826433 0.049123 13 17 18490 YMR194W intron no 563 161 183 30.972943 320.936619 175.954781 2.245401072 -0.156388 13 18 19020 YOR182C intron no 511 281 298 430.913668 682.155669 556.5346685 2.745492223 0.101486 13 19 9400 RUF1 3_flank no 750 31.335371 284.709663 158.022517 2.198718975 0.080265 13 20 19861 Negative Control no 60 NA #VALUE! 44.348872 299.716812 172.032842 2.235611364 0.108086 13 21 4845 snR8 snR8 yes 390 6 24 38.081419 312.443398 175.2624085 2.243688776 -0.024476 13 22 20985 YML067C spliced yes 40 5 21 33.937185 285.547176 159.7421805 2.203419608 0.158148 13 23 899 Glu3 GluTTC_ii tRNA yes 272 6 23 7578.680271 8415.172585 7996.926428 3.902923101 -0.450508 13 24 17389 YIL069C intron no 509 121 137 58.530671 319.88081 189.2057405 2.276934309 0.00488 13 25 6684 snR49 5_flank no 365 34.610758 284.625906 159.618332 2.203082768 0.18462 13 26 5532 snR33 5_flank no 383 30.414981 308.589159 169.50207 2.229175006 -0.099155 13 27 12473 5S rRNA 5S yes 1420 1321 1335 967.509547 3135.385311 2051.447429 3.312060392 -1.391942 13 28 11915 "rRNA(18S,5.8S,25S)" 25S yes 7956 6461 6478 26455.25249 19111.67375 22783.46312 4.357619738 -0.288404 13 29 4069 SRP SRP yes 875 236 250 32.804356 297.413207 165.1087815 2.217770172 0.047733 13 30 21425 Trp1 spliced yes 40 21 36 154.920476 412.187323 283.5538995 2.452635624 0.021592 13 31 14348 MT_VAR1 3_flank no 1467 1426 1454 30.302067 339.01058 184.6563235 2.266364185 -0.300854 13 32 19117 YPL031C intron no 202 61 79 32.326539 289.274107 160.800323 2.206286917 0.083499 13 33 5703 snR34 snR34 yes 750 436 455 29.968322 290.866064 160.417193 2.205250913 -0.006029 13 34 16328 YDR471W intron no 484 321 340 29.818467 272.86441 151.3414385 2.179957858 0.071256 13 35 11792 "rRNA(18S,5.8S,25S)" 25S yes 7956 5846 5861 7646.897263 5249.436495 6448.166879 3.809436269 0.347157 13 36 17807 YKR057W 5_exon no 422 1 18 55.499646 318.40455 186.952098 2.271730343 -0.000019 13 37 19275 YPL143W intron no 625 381 398 31.552253 301.859452 166.7058525 2.221950847 -0.020226 13 38 6356 snR43 snR43 yes 409 21 38 33.526092 297.002762 165.264427 2.218179382 0.067943 13 39 9549 RUF3 RUF3 yes 631 131 148 35.454926 291.287747 163.3713365 2.213175862 0.139122 13 40 5246 snR30 snR30 yes 801 81 97 33.109282 269.321037 151.2151595 2.179595332 0.240072 13 41 16070 YDR005C intron/exon no 180 121 140 30.764586 285.494849 158.1297175 2.199013495 0.055998 13 42 4473 U3b (snR17b) 5_flank no 662 30.501706 265.568101 148.0349035 2.170364125 0.142548 13 43 5322 snR30 snR30 yes 801 461 475 50.837104 334.902593 192.8698485 2.285264339 -0.156829 13 44 15040 MT_COX 2; ORF1 ORF1exon1 yes 2427 1201 1220 32.027546 331.42793 181.727738 2.259421221 -0.222019 13 45 15971 YDL136W 5_exon no 505 1 17 35.882836 312.859888 174.371362 2.24147516 -0.033628 13 46 660 Gln2 GlnTTG_i 3_flank no 272 35.770483 262.357959 149.064221 2.173373415 0.369028 13 47 17488 YJL024C intron/exon no 177 121 140 33.770517 350.816088 192.2933025 2.283964158 -0.359109 13 48 7830 snoRNA cluster1 intergenic/snR74 no 1574 946 962 35.952873 295.306735 165.629804 2.219138488 0.111033 13 49 7743 snoRNA cluster1 intergenic no 1574 511 528 28.059498 279.233356 153.646427 2.186522465 -0.053939 13 50 5089 snR11 snR11 yes 458 46 64 28.339462 289.970885 159.1551735 2.20182076 -0.088758 13 51 2215 Phe1 PheGAA_i 5_flank no 292 30.725537 320.168643 175.44709 2.244146169 -0.15637 13 52 15105 MT_COX 2; ORF1 ORF2exon2 yes 2427 2176 2192 28.930512 292.503623 160.7170675 2.206062 -0.068266 13 53 7744 snoRNA cluster1 intergenic no 1574 516 533 33.424014 298.972073 166.1980435 2.220625907 0.050348 13 54 12253 5S rRNA NTS2 no 1420 221 240 31.512049 291.109656 161.3108525 2.207663586 0.045206 13 55 7232 snR65 5_flank no 300 31.68424 315.895206 173.789723 2.240024091 -0.107858 13 56 2138 Met1 MetCAT_i 3_flank no 273 40.497741 277.943881 159.220811 2.201999832 0.30806 13 57 4040 SRP SRP yes 875 91 106 42.863408 291.205602 167.034505 2.222806194 0.18301 13 58 15956 YDL130W intron no 401 101 118 34.292732 291.900023 163.0963775 2.212444315 0.120133 13 59 12307 5S rRNA NTS2 no 1420 491 507 36.581965 291.342492 163.9622285 2.214743812 0.151615 13 60 17496 YJL041W intron no 218 101 122 31.125193 301.120978 166.1230855 2.220429989 -0.029946 13 61 12389 5S rRNA NTS2 no 1420 901 915 87.954069 321.680502 204.8172855 2.311366606 0.170634 13 62 6532 snR46 snR46 yes 397 151 167 31.911091 281.267103 156.589097 2.19476152 0.121674 13 63 8343 snoRNA cluster4 snR53 yes 638 501 522 29.473657 310.879211 170.176434 2.230899419 -0.145597 13 64 12878 MT_COX1 ai1 no 13084 2371 2390 29.184578 313.608761 171.3966695 2.234002379 -0.171984 13 65 4532 U3b (snR17b) U3b yes 662 216 231 58.614796 302.030654 180.322725 2.256050462 0.152852 13 66 14771 MT_ORF11; Leu; Gln tRNALeu yes 716 451 468 30.902281 299.428486 165.1653835 2.21791903 -0.027074 13 67 4644 snR3 snR3 yes 395 136 153 35.073836 307.77409 171.423963 2.234071531 -0.00141 13 68 15926 YDL108W intron no 181 61 80 33.064372 289.249715 161.1570435 2.207249291 0.10722 13 69 6788 snR50 3_flank no 290 33.219081 311.587667 172.403374 2.236545761 -0.05434 13 70 9485 RUF2 RUF2/3_flank no 468 31.25883 320.686187 175.9725085 2.245444825 -0.150655 13 71 15280 MT_9S 9S yes 701 376 400 29.240508 305.104043 167.1722755 2.223164254 -0.119365 13 72 11910 "rRNA(18S,5.8S,25S)" 25S yes 7956 6436 6454 6728.253359 5761.732408 6244.992884 3.795531948 0.036002 13 73 10013 RUF6 5_flank no 1251 33.458237 313.324298 173.3912675 2.239027221 -0.065105 13 74 6474 snR45 3_flank no 372 31.176014 293.26983 162.222922 2.21011222 0.020399 13 75 14461 MT_21S 21S_rRNA3 yes 4639 1126 1147 30.94181 340.112992 185.527401 2.268408061 -0.300226 13 76 18397 YMR125W intron no 422 81 97 33.773379 301.464068 167.6187235 2.224322529 0.03414 13 77 18248 YML034W intron no 226 61 85 30.339862 325.535908 177.937885 2.250268424 -0.20017 13 78 21433 Tyr1_2 spliced yes 40 25 37 68.97785 293.446983 181.2124165 2.258187952 0.281582 13 79 14088 MT_COB bi4 no 7308 5506 5525 28.700024 309.500032 169.100028 2.22814368 -0.165186 13 80 17871 YLL050C intron/exon no 279 221 237 65.537466 285.647359 175.5924125 2.244505746 0.331436 13 81 2748 Pro5 ProTGG_iv 3_flank no 303 31.064476 301.655304 166.35989 2.221048625 -0.035249 13 82 8142 snoRNA cluster 3; intergenic no 743 221 237 1647.044443 992.18415 1319.614297 3.120447012 1.120105 13 83 16918 YGL251C intron no 252 121 140 30.392889 299.924106 165.1584975 2.217900923 -0.047475 13 84 20537 YGR183C spliced yes 40 5 22 31.973855 289.288922 160.6313885 2.205830413 0.07195 13 85 1691 Leu6 LeuGAG tRNA yes 282 21 35 85.788024 310.13925 197.963637 2.296585424 0.243005 13 86 21010 YML124C spliced yes 40 9 28 29.464703 313.723485 171.594094 2.234502336 -0.162683 13 87 485 Asp2 AspGTC_ii 5_flank/tRNA no 272 32.930122 302.215676 167.572899 2.224203783 0.017516 13 88 6897 snR56 3_flank no 288 33.58263 319.947195 176.7649125 2.247396063 -0.115262 13 89 15806 YDL061C intron no 509 261 278 74.789295 312.099963 193.444629 2.286556676 0.161767 13 90 14466 MT_21S 21S_rRNA3 yes 4639 1201 1220 28.481346 336.33214 182.406743 2.261040889 -0.326249 13 91 13128 MT_COX1 ai3 no 13084 6121 6142 26.447955 320.181909 173.314932 2.238835981 -0.328062 13 92 20980 YML056C spliced yes 40 13 29 35.200917 335.936857 185.568887 2.268505163 -0.234229 13 93 2682 Pro4 ProTGG_iii tRNA yes 302 47 61 39.533546 268.440442 153.986994 2.187484041 0.386073 13 94 17435 YIL133C intron no 390 181 195 38.681746 321.35661 180.019178 2.255318774 -0.101641 13 95 5299 snR30 snR30 yes 801 346 363 47.985362 367.452529 207.7189455 2.317476109 -0.414068 13 96 15913 YDL083C intron no 532 341 357 54.123234 349.226995 201.6751145 2.304652312 -0.244995 13 97 183 Arg2 ArgACG_ii tRNA yes 273 31 45 72.905176 337.765572 205.335374 2.312463774 -0.040862 13 98 7785 snoRNA cluster1 intergenic/snR75 no 1574 721 742 27.77235 264.258111 146.0152305 2.164398158 -0.006948 13 99 6428 snR45 5_flank/snR45 no 372 36.053732 307.360629 171.7071805 2.234788457 0.013322 13 100 21497 copy of SH2290 no 292 38.689886 287.335937 163.0129115 2.212222004 0.209034 13 101 14188 MT_COB exon6 yes 7308 7006 7027 29.290559 307.922941 168.60675 2.226874957 -0.134512 13 102 20244 YDR367W spliced yes 40 13 31 31.641344 305.716986 168.679165 2.227061442 -0.040661 13 103 19330 YPL218W intron no 239 161 182 33.944512 432.615154 233.279833 2.367877196 -0.934263 13 104 607 Gln1 GlnCTG 3_flank no 272 36.209903 496.529869 266.369886 2.425485125 -1.276931 14 2 4213 telomerase RNA telomerase yes 1501 101 119 34.837087 591.059389 312.948238 2.495472511 -1.732716 14 3 1812 Leu8 LeuTAG_i tRNA yes 301 58 74 47.349979 321.273838 184.3119085 2.265553396 -0.067035 14 4 5549 snR33 snR33 yes 383 31 50 30.418469 318.297306 174.3578875 2.241441599 -0.156066 14 5 11645 "rRNA(18S,5.8S,25S)" 25S yes 7956 5111 5124 13173.15427 21838.30765 17505.73096 4.24318025 -1.363288 14 6 17322 YIL004C intron no 231 61 82 32.314451 277.205618 154.7600345 2.189658818 0.161571 14 7 10979 "rRNA(18S,5.8S,25S)" 18S yes 7956 1781 1799 31882.64821 31613.81061 31748.22941 4.50171951 -0.895215 14 8 5242 snR30 snR30 yes 801 61 77 34.367819 296.046321 165.20707 2.218028629 0.086182 14 9 13328 MT_COX1 ai5a no 13084 9121 9143 30.318897 302.439735 166.379316 2.221099335 -0.065399 14 10 2838 Pro7 ProTGG_vi 5_flank/tRNA no 303 165.654886 502.026757 333.8408215 2.52353944 -0.317769 14 11 5028 snR10 snR10 yes 445 171 188 32.563588 274.845165 153.7043765 2.186686234 0.185335 14 12 17332 YIL018W exon/intron no 500 41 58 32.640412 309.185075 170.9127435 2.232774446 -0.042487 14 13 9493 RUF2 3_flank no 468 30.626062 291.629112 161.127587 2.207169903 0.012144 14 14 20889 YLR275W spliced yes 40 17 36 31.731833 293.044819 162.388326 2.210554805 0.040265 14 15 12211 5S rRNA NTS2 no 1420 11 27 57.023102 329.629633 193.3263675 2.286291091 -0.080341 14 16 1672 Leu6 LeuGAG 5_flank no 282 32.999783 304.377466 168.6886245 2.227085797 0.000777 14 17 1633 Leu5 LeuCAA_v tRNA/intron no 315 30 i12 28.95109 311.023891 169.9874905 2.230416963 -0.165134 14 18 1875 Leu9 LeuTAG_ii 3_flank no 301 31.219798 274.001072 152.610435 2.18358423 0.137077 14 19 3635 Val2 ValAAC_ii 5_flank no 274 52.752198 323.307156 188.029677 2.2742264 -0.05464 14 20 34 Ala1 AlaAGC tRNA/3_flank no 273 29.363862 300.878973 165.1214175 2.217803408 -0.089295 14 21 909 Glu3 GluTTC_ii tRNA yes 272 57 69 48.835319 295.070118 171.9527185 2.235409046 0.165146 14 22 1612 Leu5 LeuCAA_v 5_flank no 315 29.577058 325.388156 177.482607 2.249155799 -0.225924 14 23 3258 Thr1 ThrAGT 3_flank no 273 31.875055 315.926605 173.90083 2.240301655 -0.105617 14 24 11068 "rRNA(18S,5.8S,25S)" 18S yes 7956 2226 2244 36.414839 297.217124 166.8159815 2.222237655 0.100383 14 25 7405 snR69 5_flank no 301 38.840619 304.371021 171.60582 2.234532013 0.050464 14 26 3749 Val4 ValTAC 5_flank no 274 32.438051 316.844324 174.6411875 2.242146676 -0.105536 14 27 7148 snR63 snR63/3_flank no 455 30.345493 297.178274 163.7618835 2.214212825 -0.032171 14 28 20841 YLL050C spliced yes 40 13 28 51.495973 310.271631 180.883802 2.257399678 0.045565 14 29 5569 snR33 snR33 yes 383 131 143 43.616138 285.165156 164.390647 2.215877105 0.243167 14 30 19903 snR17B spliced yes 40 17 36 30.212782 294.062755 162.1377685 2.209884192 -0.017344 14 31 571 Cys1 CysGCA 3_flank no 272 34.467318 261.544697 148.0060075 2.170279344 0.335992 14 32 10664 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 206 224 36.505972 318.081226 177.293599 2.248693056 -0.078302 14 33 133 Arg1 ArgACG_i tRNA yes 273 41 56 56.064747 308.653557 182.359152 2.260927564 0.083503 14 34 9919 RUF5-1 RUF5-1 yes 975 401 420 29.740562 298.745013 164.2427875 2.215486307 -0.062879 14 35 17788 YKL186C 5_exon no 249 21 38 36.1339 330.43981 183.286855 2.263131319 -0.185742 14 36 10756 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 666 683 1005.188407 1072.797243 1038.992825 3.016612548 0.361355 14 37 8025 snoRNA cluster 2 snR55 yes 739 361 377 31.610128 300.324587 165.9673575 2.220022679 -0.008927 14 38 17300 YHR141C 3_exon no 541 521 537 154.616725 400.194041 277.405383 2.443114884 0.080994 14 39 11560 "rRNA(18S,5.8S,25S)" 25S yes 7956 4686 4699 48.425346 293.978256 171.201801 2.233508329 0.173637 14 40 14896 MT_Ile 5_flank/tRNA no 276 91 113 29.051208 299.925277 164.4882425 2.21613486 -0.095163 14 41 14533 MT_21S 21S_rRNA3 yes 4639 2206 2234 28.84853 332.166854 180.507692 2.256495713 -0.289929 14 42 17884 YLR048W intron no 459 201 217 30.692749 294.908777 162.800763 2.211656436 -0.006175 14 43 6080 snR37 snR37 yes 586 316 335 30.416558 303.263998 166.840278 2.222300905 -0.067052 14 44 7226 snR65 5_flank no 300 36.283401 288.371911 162.327656 2.210392518 0.173549 14 45 7903 snoRNA cluster1 intergenic no 1574 1311 1332 29.901469 319.942334 174.9219015 2.24284419 -0.183457 14 46 17879 YLR048W intron no 459 101 117 54.056827 373.948606 214.0027165 2.330419286 -0.418372 14 47 16711 YGL031C intron no 556 361 376 70.210723 302.913535 186.562129 2.270823489 0.208963 14 48 6977 snR60 5_flank no 304 29.688715 252.828851 141.258783 2.15001546 0.160468 14 49 7984 snoRNA cluster 2 snR57 yes 739 156 175 28.815906 283.887095 156.3515005 2.194102054 -0.034618 14 50 1203 Ile1 IleAAT 5_flank no 274 38.216002 296.490856 167.353429 2.223634615 0.122275 14 51 3500 Tyr1 TyrGTA_i intron/tRNA no 289 i2 42 32.371617 314.100529 173.236073 2.23863833 -0.084891 14 52 8017 snoRNA cluster 2 snR55 yes 739 321 340 34.746435 317.428879 176.087657 2.245728915 -0.081627 14 53 12888 MT_COX1 ai1 no 13084 2521 2540 39.239452 307.473889 173.3566705 2.238940557 0.023057 14 54 20341 YER093C-A spliced yes 40 5 24 33.18579 321.573547 177.3796685 2.248903839 -0.132715 14 55 9241 snR6 / U6 RNA U6 yes 312 76 92 45.119201 320.073508 182.5963545 2.261492103 -0.069007 14 56 17993 YLR287C exon/intron no 530 41 57 31.462626 286.110873 158.7867495 2.200814258 0.075458 14 57 12526 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 286 306 31.648978 299.082526 165.365752 2.21844557 -0.000014 14 58 19467 ADH1 ADH1 yes 400 41 58 33.991084 306.948481 170.4697825 2.231647407 -0.007755 14 59 13019 MT_COX1 ai2 no 13084 4486 4508 27.637766 326.866814 177.25229 2.248591855 -0.305086 14 60 6354 snR43 snR43 yes 409 11 27 40.766418 289.400709 165.0835635 2.217703835 0.195802 14 61 18536 YMR230W intron no 510 101 120 32.00185 300.6697 166.335775 2.220985666 0.00182 14 62 3667 Val2 ValAAC_ii 3_flank no 274 29.679131 298.817625 164.248378 2.215501089 -0.065486 14 63 11170 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2736 2753 33.72927 299.869815 166.7995425 2.222194855 0.046703 14 64 16562 YER133W intron no 625 401 413 86.774871 295.163602 190.9692365 2.280963412 0.367292 14 65 2875 Pro7 ProTGG_vi 3_flank no 303 31.043849 304.225084 167.6344665 2.224363317 -0.051561 14 66 790 Glu1 GluCTC 5_flank no 272 30.879691 286.000886 158.4402885 2.199865625 0.056637 14 67 18654 YNL112W intron no 1102 261 278 30.825936 295.268302 163.047119 2.212313129 -0.003897 14 68 2407 Phe4 PheGAA_iv tRNA/3_flank no 291 31.918167 287.852252 159.8852095 2.20380829 0.079296 14 69 21811 copy of SH15491 no 433 35.184971 305.03086 170.1079155 2.230724523 0.022026 14 70 10390 RUF7 3_flank no 700 43.79579 322.607082 183.201436 2.262928874 -0.095576 14 71 13482 MT_COX1 intronic no 13084 11431 11453 31.192212 329.545621 180.3689165 2.256161696 -0.218886 14 72 13546 MT_COX1 intronic no 13084 12391 12419 43.967237 350.528418 197.2478275 2.295012229 -0.315292 14 73 4187 telomerase RNA 5_flank no 1501 37.52525 308.204752 172.865001 2.237707073 0.012345 14 74 18877 YNR053C intron no 631 521 543 33.145882 305.619183 169.3825325 2.228868622 -0.007456 14 75 15932 YDL115C 5_exon no 189 1 18 32.925728 329.488239 181.2069835 2.258174931 -0.196061 14 76 13322 MT_COX1 ai5a no 13084 9031 9052 32.649601 316.668404 174.6590025 2.242190976 -0.101472 14 77 1028 Gly2 GlyCCC_ii 3_flank no 272 30.288302 298.063816 164.176059 2.215309826 -0.039619 14 78 16133 YDR064W intron/exon no 639 581 598 44.269247 315.861951 180.065599 2.25543075 -0.036086 14 79 12681 MT_Trp tRNA yes 274 136 154 32.71356 298.309595 165.5115775 2.218828378 0.039298 14 80 21113 YNL096C spliced yes 40 5 24 29.390796 330.84519 180.117993 2.255557099 -0.263142 14 81 5268 snR30 snR30 yes 801 191 207 64.832299 310.438371 187.635335 2.273314627 0.117136 14 82 21646 copy of SH8561 no 868 34.607461 282.064368 158.3359145 2.199579435 0.201165 14 83 6694 snR49 5_flank/snR49 no 365 34.19576 289.547679 161.8717195 2.20917098 0.138957 14 84 21255 YPL075W spliced yes 40 17 32 62.599188 280.078403 171.3387955 2.23385571 0.367704 14 85 12871 MT_COX1 ai1 no 13084 2266 2287 27.739649 292.668872 160.2042605 2.204674062 -0.13433 14 86 4727 snR4 snR4/3_flank no 386 46.18138 321.434689 183.8080345 2.264364491 -0.074494 14 87 624 Gln2 GlnTTG_i 5_flank no 272 29.989665 323.811307 176.900486 2.247729026 -0.202513 14 88 11461 "rRNA(18S,5.8S,25S)" 25S yes 7956 4191 4206 85.958165 303.320666 194.6394155 2.289230792 0.297297 14 89 18116 YLR367W 3_exon no 583 541 557 30.474864 288.980241 159.7275525 2.203379837 0.023776 14 90 10372 RUF7 RUF7 yes 700 471 485 98.187245 321.238137 209.712691 2.321624713 0.235702 14 91 19309 YPL198W intron no 509 241 257 33.65774 285.135619 159.3966795 2.20247927 0.152169 14 92 608 Gln1 GlnCTG 3_flank no 272 33.453498 303.15787 168.305684 2.226098783 0.016353 14 93 11139 "rRNA(18S,5.8S,25S)" 18S yes 7956 2581 2594 22399.36489 8084.597802 15241.98135 4.183041426 0.938243 14 94 2525 Pro1 ProAGG 3_flank no 272 31.572515 267.524408 149.5484615 2.17478195 0.186387 14 95 1656 Leu5 LeuCAA_v 3_flank no 315 35.368031 287.330179 161.349105 2.207766561 0.171913 14 96 18369 YMR079W intron no 256 121 138 32.155023 329.153936 180.6544795 2.256848735 -0.20336 14 97 7332 snR66 3_flank no 286 36.38966 291.371341 163.8805005 2.214527282 0.149188 14 98 845 Glu2 GluTTC_i 5_flank/tRNA no 272 32.367687 290.399013 161.38335 2.207858726 0.077682 14 99 12683 MT_Trp tRNA/3_flank no 274 166 188 30.100851 342.796051 186.448451 2.27055878 -0.331055 14 100 3725 Val3 ValCAC 3_flank no 273 60.045778 282.751073 171.3984255 2.234006828 0.330761 14 101 178 Arg2 ArgACG_ii tRNA yes 273 6 18 42.919631 304.763235 173.841433 2.240153293 0.057621 14 102 5258 snR30 snR30 yes 801 141 155 33.322992 326.030899 179.6769455 2.254492356 -0.165026 14 103 10724 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 506 525 35.583217 535.661943 285.62258 2.455792538 -1.476316 14 104 21630 copy of SH7930 no 1574 37.806873 650.316775 344.061824 2.536636487 -1.931862 15 2 21381 Lys3_4 spliced yes 40 13 29 32.95667 773.697105 403.3268875 2.605657175 -2.415392 15 3 5196 snR13 3_flank no 324 28.60806 267.399327 148.0036935 2.170272554 0.032339 15 4 20833 YKR095W-A spliced yes 40 5 21 51.582198 327.525812 189.554005 2.277732965 -0.094855 15 5 6868 snR56 5_flank no 288 43.983029 310.416823 177.199926 2.248463536 0.010688 15 6 1402 Leu1 LeuCAA_i tRNA yes 315 e13 55 6876.955751 5731.0056 6303.980676 3.799614873 0.071547 15 7 8219 snoRNA cluster 3; snR51 yes 743 606 627 36.48577 343.394933 189.9403515 2.278617237 -0.292308 15 8 3709 Val3 ValCAC tRNA yes 273 26 40 65.563578 323.515357 194.5394675 2.289007723 0.017983 15 9 9006 snR17a / U3a U3a yes 690 316 328 40.680287 272.900928 156.7906075 2.195320043 0.357186 15 10 18647 YNL112W intron no 1102 121 140 30.424989 290.934615 160.679802 2.205961288 0.009656 15 11 11444 "rRNA(18S,5.8S,25S)" 25S yes 7956 4106 4122 1751.2748 6612.781776 4182.028288 3.621386966 -1.838255 15 12 21129 YNL130C spliced yes 40 17 36 28.493724 285.537369 157.0155465 2.195942655 -0.059806 15 13 18063 YLR344W 5_exon no 547 21 38 43.120922 325.576911 184.3489165 2.265640589 -0.122923 15 14 1524 Leu3 LeuCAA_iii tRNA yes 314 50 67 32.766431 270.528884 151.6476575 2.180835706 0.220964 15 15 4835 snR8 5_flank no 390 34.955396 316.405405 175.6804005 2.244723313 -0.071163 15 16 17442 YIL133C intron no 390 321 340 35.104405 331.941524 183.5229645 2.263690416 -0.20105 15 17 3575 Tyr2 TyrGTA_ii 3_flank no 289 31.069816 272.69648 151.883148 2.18150959 0.13595 15 18 3098 Ser3 SerCGA 3_flank no 301 41.860576 296.923622 169.392099 2.22889315 0.126517 15 19 18427 YMR142C exon/intron no 502 41 58 31.391138 299.648567 165.5198525 2.218850091 -0.012037 15 20 12241 5S rRNA NTS2 no 1420 161 178 29.375834 277.212058 153.293946 2.185525004 0.026969 15 21 19933 YBL026W spliced yes 40 9 25 39.129322 333.441537 186.2854295 2.270178887 -0.202229 15 22 19620 RNA14 1.1 RNA14 1.1 yes 401 301 315 33.860824 269.698916 151.77987 2.181214177 0.260928 15 23 19093 YOR312C intron no 507 81 99 31.82942 300.028673 165.9290465 2.219922418 0.000108 15 24 4322 telomerase RNA telomerase yes 1501 646 665 34.151147 285.277382 159.7142645 2.203343706 0.166451 15 25 7980 snoRNA cluster 2 snR57 yes 739 136 152 284.390646 613.374087 448.8823665 2.652132545 -0.178484 15 26 16676 YFR032C 3_exon no 431 401 415 501.07334 641.49669 571.285015 2.756852833 0.382375 15 27 1332 Ile3 IleTAT_ii tRNA-intron no 333 i4 i20 30.148017 270.366258 150.2571375 2.176835111 0.100582 15 28 19769 Negative Control no 60 NA #VALUE! 36.735612 304.475157 170.6053845 2.231992734 0.04439 15 29 10877 "rRNA(18S,5.8S,25S)" 18S yes 7956 1271 1284 39953.40149 20735.92273 30344.66211 4.482082306 0.081254 15 30 4768 snR5 snR5 yes 404 11 27 38.711921 292.039928 165.3759245 2.218472285 0.165715 15 31 20241 YDR367W spliced yes 40 1 16 85.573521 348.906904 217.2402125 2.336940219 -0.034724 15 32 17292 YHR141C intron no 541 361 376 49.357663 289.009112 169.1833875 2.228357716 0.223114 15 33 16309 YDR450W intron no 535 461 480 31.856712 298.611106 165.233909 2.218099177 0.009722 15 34 4443 telomerase RNA telomerase yes 1501 1251 1267 38.28839 330.0316 184.159995 2.265195294 -0.177 15 35 1467 Leu2 LeuCAA_ii tRNA/3_flank no 314 31.749726 288.962257 160.3559915 2.205085191 0.066685 15 36 12029 "rRNA(18S,5.8S,25S)" 3_ETS/NTS1 no 7956 7031 7053 33.848479 297.127822 165.4881505 2.218766902 0.070865 15 37 11653 "rRNA(18S,5.8S,25S)" 25S yes 7956 5151 5168 105.641735 364.636758 235.1392465 2.371325122 -0.005108 15 38 21171 YNL312W spliced yes 40 9 26 44.426575 293.448508 168.9375415 2.22772617 0.16631 15 39 1294 Ile2 IleTAT_i 3_flank no 333 31.42945 291.275995 161.3527225 2.207776298 0.041414 15 40 19294 YPL175W intron/exon no 200 141 158 35.525714 310.434593 172.9801535 2.237996278 -0.017381 15 41 10760 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 686 699 62.911571 295.534456 179.2230135 2.253393775 0.230804 15 42 15976 YDL136W intron no 505 101 120 30.837865 313.573285 172.205575 2.236047207 -0.114236 15 43 13912 MT_COB bi3 no 7308 2866 2892 28.484828 331.953872 180.21935 2.255801419 -0.301996 15 44 10527 RUF8 RUF8 yes 1151 561 578 36.419262 282.644337 159.5317995 2.202847264 0.224676 15 45 8954 snR17a / U3a U3a yes 690 56 75 29.967131 319.613867 174.790499 2.242517822 -0.179276 15 46 10804 "rRNA(18S,5.8S,25S)" 18S yes 7956 906 922 5795.283143 4921.253603 5358.268373 3.729024462 0.116965 15 47 4776 snR5 snR5 yes 404 51 70 30.57423 311.543554 171.058892 2.233145655 -0.111245 15 48 17006 YGR148C exon/intron no 479 41 58 31.518891 271.629969 151.57443 2.180625944 0.163465 15 49 10926 "rRNA(18S,5.8S,25S)" 18S yes 7956 1516 1533 70.008385 319.406343 194.707364 2.289382377 0.077005 15 50 17008 YGR148C intron no 479 81 98 51.989524 313.91633 182.952927 2.262339362 0.017342 15 51 7221 snR64 3_flank no 301 34.994947 291.789383 163.392165 2.213231227 0.129463 15 52 4724 snR4 snR4 yes 386 156 172 32.197881 313.682459 172.94017 2.237895882 -0.083828 15 53 19747 Negative Control no 60 NA #VALUE! 40.724122 271.608017 156.1660695 2.19358668 0.369368 15 54 12982 MT_COX1 ai2 no 13084 3931 3953 28.534164 309.539702 169.036933 2.227981604 -0.171474 15 55 4299 telomerase RNA telomerase yes 1501 531 551 32.911177 316.901456 174.9063165 2.242805494 -0.099986 15 56 304 Arg4 ArgCCT 3_flank no 272 33.131995 300.162174 166.6470845 2.22179772 0.036897 15 57 163 Arg2 ArgACG_ii 5_flank no 273 46.142444 323.024292 184.583368 2.266192566 -0.087724 15 58 2100 Lys4 LysTTT_ii 3_flank no 296 33.589189 296.843464 165.2163265 2.218052962 0.070047 15 59 19255 YPL129W 3_exon no 205 181 198 99.327406 336.284085 217.8057455 2.338069332 0.137742 15 60 14557 MT_21S 21S_rRNA3 yes 4639 2566 2583 36.05898 293.06721 164.563095 2.216332447 0.131066 15 61 1102 Gly4 GlyTCC 5_flank/tRNA no 272 31.73615 279.274336 155.505243 2.191745036 0.129025 15 62 13086 MT_COX1 ai3 no 13084 5491 5513 29.459563 320.526031 174.992797 2.243020173 -0.202361 15 63 5754 snR35 5_flank no 740 74.404811 315.081595 194.743203 2.289462309 0.136158 15 64 10467 RUF8 RUF8 yes 1151 261 283 28.987785 308.38088 168.6843325 2.227074747 -0.148098 15 65 9051 snR17a / U3a 3_flank no 690 30.845569 335.335498 183.0905335 2.26266589 -0.266556 15 66 12010 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6936 6953 31.711911 279.666081 155.688996 2.192257918 0.125646 15 67 6028 snR37 snR37 yes 586 56 73 28.523524 304.132348 166.327936 2.220965198 -0.142194 15 68 12239 5S rRNA NTS2 no 1420 151 170 30.620243 315.303192 172.9617175 2.237949989 -0.131761 15 69 8169 snoRNA cluster 3; snR70 yes 743 356 372 34.87881 277.459385 156.1690975 2.193595101 0.239628 15 70 5971 snR36 snR36 yes 555 311 328 32.911754 310.219444 171.565599 2.234430211 -0.047313 15 71 14976 MT_COX 2; ORF1 COX2 no 2427 241 262 30.915686 345.600779 188.2582325 2.274753977 -0.340133 15 72 19187 YPL079W intron no 521 421 437 41.491107 301.446508 171.4688075 2.234185128 0.083467 15 73 5810 snR35 snR35 yes 740 236 253 43.569366 289.431032 166.500199 2.221414757 0.201581 15 74 13679 MT_ORF 5 5_flank no 331 31 57 30.841826 302.637455 166.7396405 2.222038861 -0.048745 15 75 9692 RUF4 RUF4 yes 988 236 255 30.677377 298.13894 164.4081585 2.215923365 -0.026755 15 76 20399 YFR024C-A spliced yes 40 13 31 31.497327 273.88383 152.6905785 2.183812241 0.151398 15 77 7028 snR62 5_flank no 300 57.01628 279.609733 168.3130065 2.226117678 0.345254 15 78 19043 YOR234C intron no 627 241 262 32.000356 298.409248 165.204802 2.218022667 0.015665 15 79 15126 MT_Phe 5_flank/tRNA no 265 76 101 27.690832 336.960522 182.325677 2.260847835 -0.359079 15 80 12570 MT_15S 15S yes 1848 301 325 27.430359 314.330464 170.8804115 2.232692281 -0.246833 15 81 4292 telomerase RNA telomerase yes 1501 496 517 27.145752 297.304142 162.224947 2.210117641 -0.188882 15 82 16010 YDL137W intron no 432 281 298 36.603597 295.016875 165.810236 2.219611337 0.120887 15 83 10187 RUF6 RUF6 yes 1251 781 800 40.012597 311.668104 175.8403505 2.245118541 -0.013018 15 84 20425 YGL031C spliced yes 40 21 40 33.753585 340.229705 186.991645 2.271822202 -0.273541 15 85 10287 RUF7 RUF7 yes 700 46 68 27.680405 318.958154 173.3192795 2.238846875 -0.258381 15 86 3953 RNase MRP RNaseMRP yes 540 181 195 62.012998 291.577074 176.795036 2.247470067 0.260759 15 87 20913 YLR333C spliced yes 40 17 37 31.72747 322.398489 177.0629795 2.248127768 -0.157654 15 88 4350 telomerase RNA telomerase yes 1501 786 808 32.418356 364.97591 198.697133 2.298191601 -0.4734 15 89 15297 MT_9S 3_flank no 701 631 659 28.584219 311.730252 170.1572355 2.230850421 -0.182627 15 90 12654 MT_15S 15S yes 1848 1561 1577 55.735462 291.871398 173.80343 2.240058343 0.226476 15 91 5807 snR35 snR35 yes 740 221 240 30.059094 316.230976 173.145035 2.238410043 -0.156485 15 92 21260 YPL079W spliced yes 40 9 26 38.876422 339.209337 189.0428795 2.276560324 -0.250194 15 93 13649 MT_ATP6 ATP6 yes 980 541 558 56.743704 262.696479 159.7200915 2.20335955 0.508788 15 94 15921 YDL083C 3_exon no 532 501 513 33.402347 262.824744 148.1135455 2.170594778 0.294229 15 95 5990 snR36 3_flank no 555 39.004299 311.84903 175.4266645 2.244095606 -0.01697 15 96 6895 snR56 3_flank no 288 37.619394 294.021767 165.8205805 2.219638431 0.140571 15 97 11491 "rRNA(18S,5.8S,25S)" 25S yes 7956 4341 4354 43571.1178 11624.50011 27597.80896 4.440874604 1.148317 15 98 1411 Leu1 LeuCAA_i 3_flank no 315 31.348882 239.145252 135.247067 2.131127856 0.318839 15 99 19559 CBP1 2.2 CBP1 2.2 yes 401 281 300 31.887057 286.638147 159.262602 2.202113807 0.08606 15 100 8332 snoRNA cluster4 intergenic/snR53 no 638 446 465 28.487167 284.494062 156.4906145 2.194488296 -0.055289 15 101 16535 YER131W intron no 461 321 338 32.743233 296.79831 164.7707715 2.216880175 0.049596 15 102 1327 Ile3 IleTAT_ii tRNA yes 333 16 31 46.982359 333.362437 190.172398 2.279147483 -0.166454 15 103 10174 RUF6 RUF6 yes 1251 716 728 113.454137 568.54121 340.9976735 2.532751416 -0.897786 15 104 1719 Leu6 LeuGAG 3_flank no 282 76.544601 663.742136 370.1433685 2.568369973 -1.534814 16 2 10051 RUF6 RUF6 yes 1251 101 118 33.238212 888.970438 461.104325 2.663799196 -2.738938 16 3 8909 LSR1 / U2 RNA 3_flank no 1375 30.950487 276.65591 153.8031985 2.186965367 0.110775 16 4 17932 YLR093C exon/intron no 241 41 58 30.791904 306.560921 168.6764125 2.227054356 -0.074153 16 5 15456 YBL087C intron no 604 281 300 32.725272 281.231331 156.9783015 2.195839626 0.148216 16 6 12028 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 7026 7046 32.584723 306.343153 169.463938 2.229077294 -0.020373 16 7 1131 Gly4 GlyTCC 3_flank no 272 32.492083 285.691256 159.0916695 2.201647439 0.11178 16 8 16024 YDL189W intron/exon no 199 141 159 30.390343 293.031826 161.7110845 2.20873979 -0.004759 16 9 3470 Trp1 TrpCCA 3_flank no 306 38.675075 293.423122 166.0490985 2.220236522 0.152426 16 10 20476 YGL189C spliced yes 40 13 33 30.437549 320.378484 175.4080165 2.244049438 -0.16741 16 11 19306 YPL198W intron no 509 181 197 30.476827 277.003151 153.739989 2.186786846 0.085143 16 12 6330 snR42 3_flank no 551 36.728005 290.13252 163.4302625 2.213332478 0.16355 16 13 19338 YPL241C intron no 180 81 98 32.613859 284.099404 158.3566315 2.199636255 0.125973 16 14 17307 YHR203C intron no 369 121 136 40.996526 295.446808 168.221667 2.225881932 0.138544 16 15 6629 snR48 5_flank no 313 32.774018 292.545657 162.6598375 2.211280334 0.077149 16 16 18330 YML094W intron no 183 101 121 28.74879 282.281361 155.5150755 2.191772496 -0.030687 16 17 3476 Tyr1 TyrGTA_i 5_flank no 289 105.716992 368.204367 236.9606795 2.374676287 -0.026174 16 18 20252 YDR381W spliced yes 40 1 17 37.57783 303.642089 170.6099595 2.23200438 0.054145 16 19 14700 MT_Thr2 5_flank/tRNA no 276 76 102 27.132421 318.298328 172.7153745 2.237330999 -0.280506 16 20 15120 MT_COX 2; ORF1 3_flank no 2427 2401 2427 29.376138 323.088109 176.2321235 2.246085074 -0.219981 16 21 6260 snR42 snR42 yes 551 81 98 29.464448 299.695743 164.5800955 2.21637731 -0.078469 16 22 12302 5S rRNA NTS2 no 1420 466 480 46.798336 301.628132 174.213234 2.241081143 0.098306 16 23 19728 Negative Control no 60 NA #VALUE! 37.1949 304.429836 170.812368 2.232519313 0.045971 16 24 18243 YML026C 3_exon no 501 461 475 51.498069 307.331413 179.414741 2.253858122 0.07071 16 25 20664 YIL052C spliced yes 40 17 31 113.400896 355.480004 234.44045 2.370032546 0.099501 16 26 13602 MT_ATP8/AAP1 MT_AAP1 yes 347 166 188 32.128297 294.787605 163.457951 2.213406051 0.042314 16 27 19946 YBL040C spliced yes 40 17 35 29.975535 304.83241 167.4039725 2.22376576 -0.091801 16 28 4596 U3b (snR17b) 3_flank no 662 29.938544 310.057813 169.9981785 2.230444268 -0.124384 16 29 3911 RNase MRP 5_flank no 540 34.205078 301.122865 167.6639715 2.224439749 0.042198 16 30 247 Arg3 ArgCCG 3_flank no 272 31.92018 303.154305 167.5372425 2.224111363 -0.016001 16 31 21891 copy of SH18801 no 532 31.825652 276.923873 154.3747625 2.188576302 0.147527 16 32 15389 YBL040C intron no 197 61 78 36.079028 317.282538 176.680783 2.247189315 -0.072352 16 33 7967 snoRNA cluster 2 5_flank no 739 71 87 40.357963 332.275869 186.316916 2.270252287 -0.18822 16 34 1867 Leu9 LeuTAG_ii tRNA yes 301 48 62 33.855103 296.390154 165.1226285 2.217806593 0.077089 16 35 1671 Leu6 LeuGAG 5_flank no 282 31.682596 286.949348 159.315972 2.202259318 0.077345 16 36 8793 LSR1 / U2 RNA U2 yes 1375 606 625 33.805021 296.144084 164.9745525 2.217416959 0.078529 16 37 13104 MT_COX1 ai3 no 13084 5761 5777 33.760505 283.108835 158.43467 2.199850224 0.168487 16 38 20532 YGR148C spliced yes 40 9 28 31.552489 299.207379 165.379934 2.218482814 -0.00397 16 39 18264 YML056C intron no 508 161 182 29.329481 297.623018 163.4762495 2.213454665 -0.070485 16 40 577 Gln1 GlnCTG 5_flank no 272 44.123427 319.12109 181.6222585 2.259169072 -0.064714 16 41 10948 "rRNA(18S,5.8S,25S)" 18S yes 7956 1626 1644 31.152939 280.481943 155.817441 2.192616068 0.101712 16 42 2156 Met2 MetCAT_ii 5_flank no 272 30.917251 314.106189 172.51172 2.236818605 -0.114678 16 43 13161 MT_COX1 intronic no 13084 6616 6636 30.631398 319.658104 175.144751 2.243397126 -0.156636 16 44 16156 YDR129C exon/intron no 211 41 60 30.31419 307.364035 168.8391125 2.227473061 -0.095297 16 45 16 Ala1 AlaAGC 5_flank no 273 46.332737 293.944207 170.138472 2.230802528 0.167664 16 46 13828 MT_COB bi2 no 7308 1606 1627 29.713303 366.345305 198.029304 2.296729461 -0.500617 16 47 4429 telomerase RNA telomerase yes 1501 1181 1203 29.500173 308.722394 169.1112835 2.228172586 -0.13184 16 48 16363 YEL012W intron no 223 101 118 31.374875 316.918333 174.146604 2.24091501 -0.119912 16 49 649 Gln2 GlnTTG_i tRNA yes 272 31 47 188.535033 392.372444 290.4537385 2.463076971 0.289695 16 50 21666 copy of SH9401 no 750 39.454458 276.343561 157.8990095 2.198379406 0.313536 16 51 20869 YLR128W spliced yes 40 5 21 37.63838 286.61538 162.12688 2.209855025 0.20383 16 52 2732 Pro5 ProTGG_iv tRNA-intron no 303 i5 i20 39.909303 307.921444 173.9153735 2.240337974 0.020538 16 53 6619 snR48 5_flank no 313 32.017159 319.522287 175.769723 2.244944068 -0.131744 16 54 1444 Leu2 LeuCAA_ii 5_flank/tRNA no 314 32.228627 312.479991 172.354309 2.236422146 -0.073941 16 55 10787 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 821 840 1137.104307 775.703652 956.4039795 2.980641375 1.045965 16 56 12922 MT_COX1 ai2 no 13084 3031 3048 32.657219 280.153805 156.405512 2.194252054 0.15311 16 57 8592 snR19 / U1 RNA U1 yes 868 456 472 33.942808 276.919869 155.4313385 2.191538587 0.214806 16 58 11680 "rRNA(18S,5.8S,25S)" 25S yes 7956 5286 5299 11006.75431 3903.500881 7455.127596 3.872455081 1.284732 16 59 3518 Tyr1 TyrGTA_i 3_flank no 289 37.608944 315.917525 176.7632345 2.24739194 -0.056513 16 60 10416 RUF8 RUF8 yes 1151 6 23 37.758147 300.207588 168.9828675 2.227842675 0.086366 16 61 9278 RUF1 5_flank no 750 29.236113 278.961141 154.098627 2.187798769 0.011185 16 62 4712 snR4 snR4 yes 386 96 112 35.485646 317.55806 176.521853 2.246798478 -0.076291 16 63 21046 YMR142C spliced yes 40 9 26 33.116387 290.921 162.0186935 2.209565126 0.098254 16 64 293 Arg4 ArgCCT tRNA/3_flank no 272 30.733704 250.068779 140.4012415 2.147370948 0.233936 16 65 8973 snR17a / U3a U3a yes 690 151 169 32.544215 303.570776 168.0574955 2.225457887 0.001579 16 66 872 Glu2 GluTTC_i 3_flank no 272 46.796179 272.050533 159.423356 2.202551947 0.381393 16 67 2631 Pro3 ProTGG_ii 3_flank no 303 32.253963 320.958129 176.606046 2.247005567 -0.139773 16 68 12710 MT_ORF 8 ORF8 yes 491 316 342 30.216255 382.265204 206.2407295 2.314374436 -0.609142 16 69 20671 YIL069C spliced yes 40 21 35 38.543619 292.478575 165.511097 2.218827117 0.161124 16 70 16152 YDR092W 3_exon no 368 321 340 32.489211 399.18883 215.8390205 2.334129961 -0.722358 16 71 18595 YNL069C intron no 549 61 80 30.540626 319.552089 175.0463575 2.243153078 -0.159125 16 72 9232 snR6 / U6 RNA U6 yes 312 31 50 122.77792 347.949748 235.363834 2.37173973 0.20141 16 73 6211 snR40 3_flank no 297 32.710509 302.308606 167.5095575 2.224039591 0.013986 16 74 14747 MT_ORF11; Leu; Gln 5_flank/orf11 no 716 91 111 30.575386 308.137012 169.356199 2.228801098 -0.090963 16 75 7922 snoRNA cluster1 snR72 yes 1574 1406 1425 30.458142 288.533208 159.495675 2.202748911 0.026053 16 76 1739 Leu7 LeuTAA 5_flank/tRNA no 284 72.9065 324.814824 198.860662 2.298548881 0.052934 16 77 173 Arg2 ArgACG_ii 5_flank no 273 30.112126 294.899632 162.505879 2.210869077 -0.026061 16 78 4065 SRP SRP yes 875 216 237 29.912036 301.895276 165.903656 2.219855957 -0.076189 16 79 1441 Leu2 LeuCAA_ii 5_flank no 314 58.061947 305.498502 181.7802245 2.259546635 0.120487 16 80 3442 Trp1 TrpCCA tRNA yes 306 i5 i21 29.451452 290.885863 160.1686575 2.204577535 -0.033152 16 81 14076 MT_COB bi4 no 7308 5326 5346 29.165272 308.235645 168.7004585 2.227116263 -0.140857 16 82 13792 MT_COB intronic no 7308 1066 1094 28.829551 319.196639 174.013095 2.240581931 -0.217282 16 83 18032 YLR316C intron no 168 81 100 30.38125 292.369029 161.3751395 2.207836631 -0.000902 16 84 1183 His1 HisGTG 3_flank no 272 29.954844 305.228597 167.5917205 2.224252559 -0.094913 16 85 15641 YBR186W intron/exon no 213 161 177 33.305466 275.854195 154.5798305 2.189152827 0.202111 16 86 17340 YIL018W intron no 500 201 217 29.183324 286.166534 157.674929 2.197762644 -0.025581 16 87 20703 YJL001W spliced yes 40 21 37 38.118657 306.580116 172.3493865 2.236409742 0.028545 16 88 15283 MT_9S 9S yes 701 421 433 43.356696 292.666638 168.011667 2.225339441 0.170157 16 89 11666 "rRNA(18S,5.8S,25S)" 25S yes 7956 5216 5229 43.118063 323.140374 183.1292185 2.262757642 -0.102328 16 90 5012 snR10 snR10 yes 445 91 110 28.392641 290.153134 159.2728875 2.202141854 -0.086682 16 91 15741 YCR028C intron no 183 81 100 26.456334 290.621175 158.5387545 2.200135442 -0.19895 16 92 10118 RUF6 RUF6 yes 1251 436 452 49.71842 331.926765 190.8225925 2.280629792 -0.140327 16 93 13008 MT_COX1 ai2 no 13084 4321 4342 29.836397 317.771916 173.8041565 2.240060158 -0.1732 16 94 3384 Thr4 ThrTGT_ii tRNA yes 272 6 22 33.443765 326.771477 180.107621 2.25553209 -0.169136 16 95 21597 copy of SH6473 no 372 55.363717 296.63515 175.9994335 2.24551127 0.182581 16 96 10991 "rRNA(18S,5.8S,25S)" 18S yes 7956 1841 1860 18857.85688 10948.7496 14903.30324 4.173282538 0.223444 16 97 4068 SRP SRP yes 875 231 248 34.507488 309.791432 172.14946 2.235905665 -0.024296 16 98 10319 RUF7 RUF7 yes 700 206 222 42.605523 250.176875 146.391199 2.165514968 0.591191 16 99 20345 YER093C-A spliced yes 40 21 33 112.496553 319.312224 215.9043885 2.33426147 0.332857 16 100 6592 snR47 snR47 yes 299 66 85 146.269413 363.883425 255.076419 2.406670311 0.235381 16 101 15856 YDL079C exon/intron no 392 41 58 30.606392 293.506997 162.0566945 2.209666976 -0.000345 16 102 12377 5S rRNA NTS2 no 1420 841 857 48.633455 316.986722 182.8100885 2.262000159 -0.025004 16 103 7879 snoRNA cluster1 snR73 yes 1574 1191 1208 34.89442 473.202042 254.048231 2.404916175 -1.163344 16 104 18300 YML073C intron no 515 201 220 34.96064 672.178839 353.5697395 2.548475089 -2.049077 17 2 10437 RUF8 RUF8 yes 1151 111 130 33.491131 896.586177 465.038654 2.667489053 -2.754848 17 3 9864 RUF5-1 RUF5-1 yes 975 126 147 29.044389 353.857768 191.4510785 2.282057817 -0.424336 17 4 19603 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 361 377 28.892711 277.226543 153.059627 2.184860651 0.001133 17 5 13890 MT_COB intronic no 7308 2536 2558 30.837124 314.336069 172.5865965 2.237007064 -0.118735 17 6 13356 MT_COX1 intronic no 13084 9541 9558 36.95915 306.856845 171.9079975 2.235296081 0.023203 17 7 13259 MT_COX1 ai4 no 13084 8086 8112 28.498214 332.916122 180.707168 2.25697538 -0.306835 17 8 18797 YNL301C intron no 532 281 293 34.65119 278.300457 156.4758235 2.194447246 0.227218 17 9 874 Glu2 GluTTC_i 3_flank no 272 36.684963 360.317424 198.5011935 2.297763122 -0.424045 17 10 17112 YHR001W 3_exon no 163 121 138 36.665668 328.464385 182.5650265 2.261417585 -0.167654 17 11 3986 RNase MRP 3_flank no 540 32.510171 303.508892 168.0095315 2.225333921 0.000972 17 12 3111 Ser4 SerGCT 5_flank no 301 29.399327 312.303641 170.851484 2.232618755 -0.156651 17 13 1236 Ile1 IleAAT 3_flank no 274 51.174515 349.664395 200.419455 2.301939877 -0.266524 17 14 15148 MT_Thr1 tRNA yes 272 151 170 34.608834 353.802733 194.2057835 2.288262159 -0.380557 17 15 17486 YJL024C intron no 177 81 100 36.799791 336.276062 186.5379265 2.270767145 -0.232993 17 16 14328 MT_VAR1 VAR1 yes 1467 1126 1148 32.819194 360.357121 196.5881575 2.293557352 -0.436693 17 17 9890 RUF5-1 RUF5-1 yes 975 256 275 30.942605 289.866576 160.4045905 2.205216793 0.034043 17 18 15034 MT_COX 2; ORF1 ORF1exon1 yes 2427 1111 1127 67.350947 343.605995 205.478471 2.312766325 -0.119326 17 19 16167 YDR139C intron no 173 61 80 29.220517 296.176571 162.698544 2.211383666 -0.069385 17 20 2527 Pro1 ProAGG 3_flank no 272 31.481318 304.723324 168.102321 2.22557371 -0.039962 17 21 21848 copy of SH17383 no 509 35.863028 313.682773 174.7729005 2.242474094 -0.041018 17 22 15952 YDL130W 5_exon no 401 21 33 61.904214 278.10545 170.004832 2.230461265 0.382691 17 23 19116 YPL031C exon/intron no 202 41 58 29.583721 297.045076 163.3143985 2.213024476 -0.057894 17 24 13075 MT_COX1 ai3 no 13084 5326 5350 28.596291 328.833254 178.7147725 2.252160453 -0.280528 17 25 6792 snR50 3_flank no 290 31.927689 302.363817 167.145753 2.223095346 -0.010948 17 26 12072 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7246 7264 34.16071 312.008611 173.0846605 2.238258581 -0.046103 17 27 8963 snR17a / U3a U3a yes 690 101 115 74.781472 348.076565 211.4290185 2.325164594 -0.100632 17 28 10783 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 801 816 55.91833 308.658864 182.288597 2.260759502 0.082682 17 29 10257 RUF6 3_flank no 1251 31.843539 312.730039 172.286789 2.236251977 -0.080895 17 30 19170 YPL079W intron no 521 81 98 31.749726 304.066681 167.9082035 2.225071915 -0.027125 17 31 20764 YJR145C spliced yes 40 13 28 1082.468513 1013.914974 1048.191744 3.020440734 0.546594 17 32 1418 Leu1 LeuCAA_i 3_flank no 315 104.637091 369.14479 236.8909405 2.374548452 -0.038801 17 33 7765 snoRNA cluster1 snR76 yes 1574 621 633 44.55817 291.054222 167.806196 2.224807992 0.189204 17 34 11198 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2876 2894 33.778775 317.408856 175.5938155 2.244509216 -0.093166 17 35 9341 RUF1 RUF1 yes 750 281 298 35.919552 296.522337 166.2209445 2.220685746 0.100497 17 36 4408 telomerase RNA telomerase yes 1501 1076 1092 33.748102 278.118468 155.933285 2.192938828 0.200847 17 37 14953 MT_Met tRNA/3_flank no 276 166 187 29.427531 315.302407 172.364969 2.236449006 -0.173244 17 38 17123 YHR010W intron no 661 181 196 88.423442 359.560347 223.9918945 2.350232303 -0.084742 17 39 16128 YDR064W intron no 639 481 499 31.439494 321.579304 176.509399 2.246767836 -0.155142 17 40 2424 Phe4 PheGAA_iv 3_flank no 291 31.323159 263.146359 147.234759 2.16801035 0.196039 17 41 21448 copy of SH168 no 273 52.381524 315.971834 184.176679 2.265234638 0.002677 17 42 6032 snR37 snR37 yes 586 76 95 30.922897 292.698544 161.8107205 2.209007292 0.015477 17 43 19366 YPR028W intron no 233 121 137 47.322348 321.619928 184.471138 2.265928427 -0.070021 17 44 11108 "rRNA(18S,5.8S,25S)" 18S yes 7956 2426 2439 14063.91039 11354.66695 12709.28867 4.104121244 -0.19541 17 45 12145 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7611 7628 29.990195 322.098493 176.044344 2.245622077 -0.19273 17 46 16812 YGL178W 5_exon no 740 21 39 31.709776 330.743156 181.226466 2.258221622 -0.221036 17 47 10386 RUF7 3_flank no 700 43.49937 272.152909 157.8261395 2.198178934 0.373418 17 48 15766 YCR097W 5_exon no 154 1 18 29.316048 313.084703 171.2003755 2.233504713 -0.164212 17 49 6803 snR52 5_flank no 292 33.238835 301.139761 167.189298 2.223208474 0.030194 17 50 10946 "rRNA(18S,5.8S,25S)" 18S yes 7956 1616 1629 57.303626 296.542789 176.9232075 2.247784804 0.193607 17 51 9810 RUF4 3_flank no 988 35.395517 296.469026 165.9322715 2.219930858 0.094856 17 52 11009 "rRNA(18S,5.8S,25S)" 18S yes 7956 1931 1944 10408.65972 5374.929989 7891.794856 3.897175787 0.683382 17 53 514 Asp2 AspGTC_ii 3_flank no 272 41.823948 338.387666 190.105807 2.278995383 -0.233133 17 54 4349 telomerase RNA telomerase yes 1501 781 798 35.938515 292.418762 164.1786385 2.21531665 0.135155 17 55 5521 snR32 3_flank no 388 32.04977 306.64046 169.345115 2.228772673 -0.032822 17 56 15109 MT_COX 2; ORF1 intronic no 2427 2236 2248 639.93511 765.377489 702.6562995 2.846742944 0.369345 17 57 11890 "rRNA(18S,5.8S,25S)" 25S yes 7956 6336 6353 380.085172 590.082232 485.083702 2.685816683 0.211231 17 58 16542 YER133W 5_exon no 625 1 19 43.152429 316.583215 179.867822 2.254953476 -0.045981 17 59 9928 RUF5-1 RUF5-1 yes 975 446 463 37.118881 297.650656 167.3847685 2.223715936 0.10471 17 60 11078 "rRNA(18S,5.8S,25S)" 18S yes 7956 2276 2293 2497.326088 2282.670032 2389.99806 3.378397548 0.343765 17 61 5090 snR11 snR11 yes 458 51 67 33.046415 286.50562 159.7760175 2.203511592 0.124204 17 62 8015 snoRNA cluster 2 intergenic no 739 311 330 32.900102 305.725788 169.312945 2.228690164 -0.011399 17 63 6940 snR58 snR58 yes 296 61 77 47.226662 272.691154 159.958908 2.204008431 0.376246 17 64 6957 snR58 3_flank no 296 42.634131 266.272187 154.453159 2.188796795 0.432621 17 65 15426 YBL072C intron no 408 81 100 32.031348 355.640899 193.8361235 2.287434716 -0.402102 17 66 15457 YBL087C intron no 604 301 317 58.275936 327.157489 192.7167125 2.284919379 -0.05355 17 67 9062 snR14 / U4 RNA 5_flank no 360 29.696451 309.174195 169.435323 2.229003955 -0.127608 17 68 18701 YNL130C intron no 541 101 120 29.707336 387.915514 208.811425 2.319754257 -0.651691 17 69 7887 snoRNA cluster1 snR73/intergenic no 1574 1231 1252 29.803888 332.818526 181.311207 2.258424649 -0.262161 17 70 10366 RUF7 RUF7 yes 700 441 457 38.095276 327.199484 182.64738 2.261613447 -0.153381 17 71 20217 YDR064W spliced yes 40 21 38 30.098726 293.019896 161.559311 2.208331992 -0.014752 17 72 6411 snR45 5_flank no 372 30.214011 266.654439 148.434225 2.171534049 0.122387 17 73 16641 YFR024C intron/exon no 218 161 178 30.267762 298.919351 164.5935565 2.216412829 -0.045605 17 74 1842 Leu9 LeuTAG_ii 5_flank no 301 36.420039 299.641247 168.030643 2.225388489 0.080368 17 75 14043 MT_COB bi4 no 7308 4831 4855 30.178218 334.586755 182.3824865 2.260983132 -0.270088 17 76 9789 RUF4 RUF4 yes 988 721 742 49.532503 340.635534 195.0840185 2.290221693 -0.208481 17 77 841 Glu2 GluTTC_i 5_flank no 272 34.00117 310.403758 172.202464 2.236039361 -0.035297 17 78 15779 YDL012C intron/exon no 186 121 138 29.792838 303.591927 166.6923825 2.221915754 -0.090677 17 79 19822 Negative Control no 60 NA #VALUE! 35.669054 287.566611 161.6178325 2.208489278 0.17339 17 80 1701 Leu6 LeuGAG tRNA yes 282 71 83 31.428322 262.535167 146.9817445 2.167263398 0.204343 17 81 10707 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 421 437 47.063278 287.301932 167.182605 2.223191088 0.232586 17 82 5572 snR33 snR33 yes 383 146 165 28.859646 304.41079 166.635218 2.221766794 -0.128867 17 83 2614 Pro3 ProTGG_ii tRNA yes 303 22 37 38.173017 280.075467 159.124242 2.201736348 0.266714 17 84 7635 snR189 3_flank no 389 33.80838 290.451356 162.129868 2.209863029 0.122824 17 85 18591 YNL050C 3_exon no 191 161 177 40999.05617 12063.2013 26531.12874 4.423755727 1.012282 17 86 14915 MT_Tyr tRNA yes 284 121 137 60.99971 308.959085 184.9793975 2.267123361 0.107465 17 87 286 Arg4 ArgCCT tRNA yes 272 26 40 49.225772 289.165366 169.195569 2.228388985 0.221251 17 88 21861 copy of SH18011 no 530 58.08459 298.51252 178.298555 2.251147824 0.180486 17 89 16881 YGL189C exon/intron no 269 41 53 87.6619 325.932506 206.797203 2.31554466 0.138041 17 90 10156 RUF6 RUF6 yes 1251 626 647 24.767637 315.461981 170.114809 2.230742122 -0.410277 17 91 8007 snoRNA cluster 2 intergenic no 739 271 290 28.24319 263.486372 145.864781 2.163950444 0.026067 17 92 5070 snR11 5_flank no 458 29.917539 293.833326 161.8754325 2.209180942 -0.026161 17 93 21341 YPR098C spliced yes 40 9 28 31.63916 290.009536 160.824348 2.206351799 0.056381 17 94 10305 RUF7 RUF7 yes 700 136 151 35.268886 312.171156 173.720021 2.239849873 -0.034171 17 95 923 Glu3 GluTTC_ii 3_flank no 272 30.076477 267.529724 148.8031005 2.17261198 0.110935 17 96 13664 MT_ATP6 ATP6 yes 980 766 783 32.2268 285.237023 158.7319115 2.200664246 0.106149 17 97 8502 snR19 / U1 RNA U1 yes 868 6 24 47.530612 395.688566 221.609589 2.345588548 -0.607175 17 98 16079 YDR025W intron no 439 121 137 30.387757 282.484957 156.436357 2.194337694 0.0545 17 99 6121 snR39B 5_flank no 296 35.596756 291.567081 163.5819185 2.213735297 0.138407 17 100 1937 Lys1 LysCTT_i 3_flank no 272 30.237519 287.075726 158.6566225 2.200458205 0.025332 17 101 18568 YNL012W intron no 184 61 77 42.207999 268.638301 155.42315 2.191515707 0.406985 17 102 14064 MT_COB bi4 no 7308 5146 5170 28.690992 337.390146 183.040569 2.262547357 -0.324374 17 103 5718 snR34 snR34 yes 750 511 530 32.685354 536.557194 284.621274 2.454267358 -1.508016 17 104 4462 telomerase RNA 3_flank no 1501 36.663167 644.513479 340.588323 2.532229754 -1.925306 18 2 6883 snR56 snR56 yes 288 46 63 33.665621 811.946221 422.805921 2.626141061 -2.519496 18 3 12730 MT_COX1 exon1 yes 13084 151 173 33.49245 298.444965 165.9687075 2.220026212 0.055556 18 4 9773 RUF4 RUF4 yes 988 641 658 33.305521 299.755647 166.530584 2.221494005 0.042409 18 5 7129 snR63 snR63 yes 455 151 167 84.984611 323.581647 204.283129 2.310232501 0.13826 18 6 4496 U3b (snR17b) U3b yes 662 36 56 28.753564 300.491893 164.6227285 2.216489796 -0.113678 18 7 16995 YGR118W intron no 420 241 255 62.255753 302.295598 182.2756755 2.260728716 0.16987 18 8 5462 snR32 5_flank no 388 36.86846 297.305727 167.0870935 2.222942904 0.104773 18 9 7404 snR69 5_flank no 301 36.776453 283.488135 160.132294 2.204478925 0.22135 18 10 15670 YBR191W exon/intron no 488 41 57 32.552614 316.515786 174.5342 2.24188054 -0.101513 18 11 7168 snR64 5_flank no 301 44.924884 297.755407 171.3401455 2.233859131 0.127933 18 12 2266 Phe2 PheGAA_ii 5_flank no 292 30.366732 288.105939 159.2363355 2.202042175 0.025643 18 13 17919 YLR061W 3_exon no 489 441 457 34.456902 283.279734 158.868318 2.201037298 0.188696 18 14 421 Asp1 AspGTC_i 5_flank no 271 36.546872 265.217577 150.8822245 2.178638078 0.371491 18 15 4851 snR8 snR8 yes 390 36 52 59.559692 309.508129 184.5339105 2.266076185 0.09445 18 16 4563 U3b (snR17b) U3b yes 662 371 387 47.311565 337.520296 192.4159305 2.284241025 -0.19746 18 17 9275 RUF1 5_flank no 750 32.941632 302.182887 167.5622595 2.224176208 0.017929 18 18 4027 SRP SRP yes 875 26 42 31.074849 303.061927 167.068388 2.222894282 -0.043466 18 19 21837 copy of SH16602 no 421 31.265304 282.661356 156.96333 2.195798204 0.091221 18 20 20494 YGL251C spliced yes 40 13 34 29.270738 317.889665 173.5802015 2.239500188 -0.193869 18 21 10001 RUF5-1 3_flank no 975 29.351034 301.187885 165.2694595 2.218192607 -0.09164 18 22 15130 MT_Phe tRNA yes 265 136 155 31.551645 319.474016 175.5128305 2.24430887 -0.137435 18 23 21850 copy of SH17600 no 243 44.535004 288.579444 166.557224 2.221563474 0.212552 18 24 20392 YFL039C spliced yes 40 9 25 31.707798 306.567095 169.1374465 2.22823977 -0.043583 18 25 12969 MT_COX1 ai2 no 13084 3736 3755 29.631499 306.244838 167.9381685 2.225149413 -0.112366 18 26 18286 YML067C intron no 193 101 118 29.67456 275.747226 152.710893 2.183870017 0.049745 18 27 15724 YBR255C intron no 194 121 140 31.828136 285.721353 158.7747445 2.200781423 0.090027 18 28 194 Arg2 ArgACG_ii 3_flank no 273 31.774812 311.015905 171.3953585 2.233999057 -0.068206 18 29 1660 Leu5 LeuCAA_v 3_flank no 315 38.163658 289.79795 163.980804 2.214793011 0.182278 18 30 7313 snR66 snR66 yes 286 56 70 69.498539 306.958004 188.2282715 2.274684854 0.171979 18 31 8901 LSR1 / U2 RNA U2 yes 1375 1146 1161 70.499857 318.401768 194.4508125 2.288809762 0.087707 18 32 6862 snR56 5_flank no 288 29.441285 325.649467 177.545376 2.249309366 -0.232206 18 33 316 Arg5 ArgTCT 5_flank no 272 29.447756 306.067425 167.7575905 2.22468218 -0.117795 18 34 12062 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7196 7213 33.737698 279.647855 156.6927765 2.195048976 0.190428 18 35 9082 snR14 / U4 RNA U4 yes 360 26 42 46.631587 296.777326 171.7044565 2.234781567 0.142269 18 36 6231 snR42 5_flank no 551 29.408427 298.980405 164.194416 2.215358383 -0.076056 18 37 155 Arg1 ArgACG_i 3_flank no 273 33.641469 311.635241 172.638355 2.237137289 -0.049486 18 38 16510 YER117W intron no 571 381 399 31.44684 307.29583 169.371335 2.228839911 -0.056584 18 39 14195 MT_COB exon6 yes 7308 7111 7128 29.244083 279.507905 154.375994 2.188579767 0.009001 18 40 17582 YJL191W intron no 508 161 177 39.756342 284.406724 162.081533 2.209733536 0.242148 18 41 2952 Ser1 SerAGA_i 5_flank/tRNA no 283 28.985025 299.210885 164.097955 2.215103169 -0.095531 18 42 20102 YDL061C spliced yes 40 5 26 28.773814 296.067161 162.4204875 2.21064081 -0.09283 18 43 6901 snR56 3_flank no 288 30.58578 351.004212 190.794996 2.28056698 -0.382915 18 44 9993 RUF5-1 RUF5-1/3_flank no 975 38.504943 282.205904 160.3554235 2.205083653 0.251571 18 45 9754 RUF4 RUF4 yes 988 546 558 38.112444 295.097615 166.6050295 2.221688108 0.135188 18 46 19738 Negative Control no 60 NA #VALUE! 48.910145 307.747098 178.3286215 2.251221052 0.054479 18 47 21839 copy of SH17169 no 268 39.502316 302.149478 170.825897 2.23255371 0.072474 18 48 771 Gln4 GlnTTG_iii 3_flank no 272 149.156901 384.462764 266.8098325 2.42620183 0.135128 18 49 939 Gly1 GlyCCC_i 5_flank no 272 29.291639 295.32323 162.3074345 2.210338413 -0.061766 18 50 16584 YFL034C exon/intron no 421 41 55 51.296712 268.050551 159.6736315 2.203233203 0.4351 18 51 1336 Ile3 IleTAT_ii tRNA-intron no 333 i24 i38 71.606208 317.898584 194.752396 2.289482809 0.098135 18 52 2919 Pro8 ProTGG_vii 3_flank no 305 29.471355 296.174119 162.822737 2.211715051 -0.056461 18 53 8033 snoRNA cluster 2 snR55 yes 739 401 418 57.854452 307.534884 182.694668 2.261725873 0.102227 18 54 6390 snR43 snR43/3_flank no 409 30.676433 315.104727 172.89058 2.237771331 -0.128687 18 55 1187 His1 HisGTG 3_flank no 272 56.239884 306.141013 181.1904485 2.2581353 0.105587 18 56 16564 YER133W intron no 625 441 455 50.346591 297.256439 173.801515 2.240053558 0.153144 18 57 12632 MT_15S 15S yes 1848 1231 1250 30.09072 303.237241 166.6639805 2.22184175 -0.078136 18 58 9080 snR14 / U4 RNA U4 yes 360 16 33 46.823079 305.893567 176.358323 2.24639596 0.059863 18 59 20174 YDL137W spliced yes 40 17 38 38.759463 361.024573 199.892018 2.300795452 -0.421589 18 60 10276 RUF7 5_flank/RUF7 no 700 34.714835 314.949125 174.83198 2.242620876 -0.062622 18 61 992 Gly2 GlyCCC_ii 5_flank no 272 28.460847 301.30181 164.8813285 2.217171478 -0.133161 18 62 2093 Lys4 LysTTT_ii 3_flank no 296 36.56763 297.110754 166.839192 2.222298078 0.103001 18 63 1597 Leu4 LeuCAA_iv 3_flank no 314 35.219316 319.563273 177.3912945 2.248932303 -0.094567 18 64 3479 Tyr1 TyrGTA_i 5_flank no 289 31.809674 339.375954 185.592814 2.268561157 -0.283411 18 65 17656 YKL002W 5_exon no 168 21 36 71.87975 302.162163 187.0209565 2.271890274 0.224937 18 66 4206 telomerase RNA telomerase yes 1501 66 87 33.244342 311.070024 172.157183 2.235925148 -0.049916 18 67 21202 YOL127W spliced yes 40 9 21 83.877607 305.211389 194.544498 2.289018953 0.270469 18 68 21284 YPL143W spliced yes 40 9 26 33.137048 301.066308 167.101678 2.222980811 0.029527 18 69 9628 RUF4 5_flank no 988 60.306425 260.2532 160.2798125 2.204878826 0.548411 18 70 2956 Ser1 SerAGA_i tRNA yes 283 11 25 974.296409 619.018446 796.6574275 2.90127161 1.231972 18 71 3469 Trp1 TrpCCA 3_flank no 306 90.203645 319.842969 205.023307 2.311803234 0.197713 18 72 605 Gln1 GlnCTG tRNA/3_flank no 272 75.716468 282.154832 178.93565 2.252696875 0.415689 18 73 6389 snR43 snR43 yes 409 186 202 48.221521 283.344012 165.7827665 2.219539383 0.274099 18 74 11484 "rRNA(18S,5.8S,25S)" 25S yes 7956 4306 4321 68.772615 299.721133 184.246874 2.265400128 0.227027 18 75 18785 YNL301C exon/intron no 532 41 57 33.912684 295.307929 164.6103065 2.216457024 0.086833 18 76 10884 "rRNA(18S,5.8S,25S)" 18S yes 7956 1306 1321 43909.54791 8685.993378 26297.77064 4.419918933 1.641881 18 77 2306 Phe2 PheGAA_ii 3_flank no 292 37.766439 286.359637 162.063038 2.209683976 0.207442 18 78 13878 MT_COB intronic no 7308 2356 2382 29.598695 350.734309 190.166502 2.279134018 -0.394598 18 79 21199 YOL121C spliced yes 40 21 35 70.997825 274.786368 172.8920965 2.237775141 0.458013 18 80 13653 MT_ATP6 ATP6 yes 980 601 623 27.352347 314.479732 170.9160395 2.232782821 -0.25189 18 81 7342 snR68 5_flank no 336 33.088817 304.601946 168.8453815 2.227489186 0.00007 18 82 16639 YFR024C intron no 218 121 143 30.810863 334.20999 182.5104265 2.26128768 -0.258713 18 83 2309 Phe2 PheGAA_ii 3_flank no 292 30.445035 312.657496 171.5512655 2.234393926 -0.122239 18 84 15816 YDL061C 3_exon no 509 461 480 41.535734 343.458989 192.4973615 2.284424781 -0.274921 18 85 19674 SIR1 2.4 SIR1 2.4 yes 401 201 222 32.459748 314.852555 173.6561515 2.239690172 -0.089675 18 86 17175 YHR021C intron no 650 81 97 166.977026 386.780963 276.8789945 2.442290009 0.214764 18 87 3930 RNase MRP RNaseMRP yes 540 66 83 32.644593 297.872875 165.258734 2.218164421 0.039791 18 88 3050 Ser3 SerCGA 5_flank no 301 34.21471 308.309239 171.2619745 2.233660947 -0.015972 18 89 11997 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6871 6884 61.498013 298.925352 180.2116825 2.255782941 0.193854 18 90 1474 Leu2 LeuCAA_ii 3_flank no 314 28.384795 330.271898 179.3283465 2.253648944 -0.296317 18 91 2668 Pro4 ProTGG_iii tRNA yes 302 6 23 135.571466 342.170578 238.871022 2.378163468 0.309212 18 92 14632 MT_21S Sce1 no 4639 3691 3714 29.911157 324.131429 177.021293 2.248025509 -0.20707 18 93 19704 Negative Control no 60 NA #VALUE! 75.729858 332.516085 204.1229715 2.309891882 0.015209 18 94 8074 snoRNA cluster 2 snR61 yes 739 606 625 37.977178 307.969853 172.9735155 2.237979612 0.015568 18 95 8551 snR19 / U1 RNA U1 yes 868 251 263 62.767424 301.879372 182.323398 2.260842406 0.176275 18 96 17519 YJL136C intron no 560 341 358 32.260131 369.455787 200.857959 2.302889045 -0.507934 18 97 13645 MT_ATP6 ATP6 yes 980 481 502 29.024683 329.323785 179.174234 2.253275556 -0.267745 18 98 8645 snR19 / U1 RNA 3_flank no 868 29.464691 274.828914 152.1468025 2.18226283 0.043159 18 99 50 Ala1 AlaAGC 3_flank no 273 27.971982 280.231885 154.1019335 2.187808088 -0.063546 18 100 8014 snoRNA cluster 2 intergenic no 739 306 325 32.124697 336.152755 184.138726 2.265145134 -0.255747 18 101 600 Gln1 GlnCTG tRNA yes 272 41 55 46.018525 277.360346 161.6894355 2.208681645 0.325986 18 102 6153 snR39B 3_flank no 296 30.539597 281.367466 155.9535315 2.192995214 0.067523 18 103 18378 YMR116C intron no 373 61 80 32.526261 387.39451 209.9603855 2.322137361 -0.639658 18 104 5115 snR11 snR11 yes 458 176 196 32.482098 367.476138 199.979118 2.300984649 -0.492296 19 2 11322 "rRNA(18S,5.8S,25S)" 25S yes 7956 3496 3513 50026.55564 21351.65292 35689.10428 4.552535648 0.308352 19 3 13132 MT_COX1 ai3 no 13084 6181 6200 33.592161 350.303581 191.947871 2.283183299 -0.355508 19 4 19999 YBR078W spliced yes 40 1 13 76.337399 313.446999 194.892199 2.289794456 0.160767 19 5 6966 snR60 5_flank no 304 54.579855 329.841919 192.210887 2.283777983 -0.096333 19 6 19567 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 41 58 37.299485 275.09428 156.1968825 2.193672362 0.301477 19 7 10881 "rRNA(18S,5.8S,25S)" 18S yes 7956 1291 1306 2928.589862 2774.473412 2851.531637 3.455078194 0.228336 19 8 19254 YPL129W 3_exon no 205 161 178 41.175649 341.35149 191.2635695 2.281632257 -0.259278 19 9 17495 YJL041W intron no 218 81 99 32.693651 290.273572 161.4836115 2.208128454 0.088941 19 10 726 Gln4 GlnTTG_iii 5_flank no 272 36.739742 298.073762 167.406752 2.22377297 0.096948 19 11 7684 snoRNA cluster1 intergenic no 1574 216 235 36.621571 330.474875 183.548223 2.263750184 -0.184814 19 12 1165 His1 HisGTG tRNA yes 272 45 60 256.483254 460.773409 358.6283315 2.554644596 0.252475 19 13 10111 RUF6 RUF6 yes 1251 401 417 36.449486 268.636455 152.5429705 2.183392199 0.345122 19 14 12725 MT_COX1 5_flank/exon1 no 13084 76 102 36.457456 339.786029 188.1217425 2.274438993 -0.262859 19 15 12079 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7281 7299 32.432974 276.378632 154.405803 2.188663618 0.170894 19 16 18750 YNL162W intron no 612 321 337 49.258823 313.559948 181.4093855 2.258659752 0.006827 19 17 2136 Met1 MetCAT_i tRNA/3_flank no 273 41.201239 283.571357 162.386298 2.210549381 0.253626 19 18 12149 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7631 7648 95.157538 430.189788 262.673663 2.41941653 -0.440287 19 19 19839 Negative Control no 60 NA #VALUE! 39.594907 286.903557 163.249232 2.212851147 0.217354 19 20 9114 snR14 / U4 RNA 3_flank no 360 33.366312 321.638638 177.502475 2.249204413 -0.130968 19 21 11543 "rRNA(18S,5.8S,25S)" 25S yes 7956 4601 4617 30926.99721 21794.65379 26360.8255 4.420959006 -0.315234 19 22 6446 snR45 snR45 yes 372 76 92 49.535755 332.756976 191.1463655 2.281366045 -0.147886 19 23 10412 RUF8 5_flank/RUF8 no 1151 33.574433 306.543956 170.0591945 2.230600118 -0.009603 19 24 2414 Phe4 PheGAA_iv 3_flank no 291 31.523667 290.127492 160.8255795 2.206355125 0.051814 19 25 3866 RNaseP RNaseP yes 569 296 312 35.895802 304.28901 170.092406 2.230684924 0.036325 19 26 13255 MT_COX1 ai4 no 13084 8026 8048 27.364412 325.280995 176.3227035 2.246308236 -0.306511 19 27 6300 snR42 snR42 yes 551 281 297 31.657908 308.734285 170.1960965 2.230949595 -0.058197 19 28 11060 "rRNA(18S,5.8S,25S)" 18S yes 7956 2186 2204 33.769616 314.067291 173.9184535 2.240345665 -0.067123 19 29 15286 MT_9S 9S yes 701 466 482 31.574461 283.24616 157.4103105 2.197033176 0.09769 19 30 15721 YBR255C intron no 194 61 78 29.402583 286.937008 158.1697955 2.199123553 -0.017531 19 31 17252 YHR097C intron no 224 141 160 31.538563 311.070371 171.304467 2.233768688 -0.07602 19 32 11593 "rRNA(18S,5.8S,25S)" 25S yes 7956 4851 4864 1385.054855 1975.050675 1680.052765 3.225322922 -0.194062 19 33 6316 snR42 3_flank no 551 33.724735 295.214575 164.469655 2.216085781 0.085313 19 34 18685 YNL112W intron no 1102 881 905 29.44062 303.934986 166.687803 2.221903822 -0.105175 19 35 5740 snR34 3_flank no 750 61.718294 321.75998 191.739137 2.282710768 0.008996 19 36 824 Glu1 GluCTC 3_flank no 272 31.501601 293.443997 162.472799 2.210780662 0.030155 19 37 3802 RNaseP 5_flank no 569 72.287274 326.677324 199.482299 2.299904365 0.035068 19 38 1403 Leu1 LeuCAA_i tRNA yes 315 e23 60 280.784664 479.588804 380.186734 2.579996959 0.263856 19 39 3944 RNase MRP RNaseMRP yes 540 136 157 29.160926 290.24531 159.703118 2.203313395 -0.04562 19 40 16087 YDR025W intron no 439 281 300 31.165386 300.368649 165.7670175 2.219498124 -0.023993 19 41 988 Gly2 GlyCCC_ii 5_flank no 272 95.279608 360.762023 228.0208155 2.357974495 -0.047693 19 42 20808 YKL186C spliced yes 40 1 18 32.865721 300.378352 166.6220365 2.221732438 0.031419 19 43 14824 MT_Lys; Arg1; Gly tRNAGly yes 682 541 557 34.653054 288.432195 161.5426245 2.208287134 0.153997 19 44 16432 YER074W intron no 566 201 221 30.225434 318.071164 174.148299 2.240919237 -0.161405 19 45 16036 YDL191W intron no 591 181 200 27.925098 316.354969 172.1400335 2.235881883 -0.234102 19 46 13948 MT_COB bi3 no 7308 3406 3426 31.747059 316.779735 174.263397 2.241206176 -0.113948 19 47 14488 MT_21S 21S_rRNA3 yes 4639 1531 1559 27.563205 304.692972 166.1280885 2.220443068 -0.197859 19 48 13494 MT_COX1 exon5g/intronic no 13084 11611 11626 49.566097 283.713794 166.6399455 2.221779115 0.274438 19 49 16655 YFR031C 3_exon no 247 221 235 79.76413 330.548458 205.156294 2.312084845 0.054699 19 50 12587 MT_15S 15S yes 1848 556 584 27.472826 311.751138 169.611982 2.229456529 -0.233457 19 51 14706 MT_Thr2 tRNA/3_flank no 276 166 192 27.517765 324.666592 176.0921785 2.245740066 -0.297195 19 52 3963 RNase MRP RNaseMRP yes 540 231 247 29.572402 287.504142 158.538272 2.20013412 -0.011212 19 53 20941 YLR426W spliced yes 40 5 21 33.64214 293.101878 163.372009 2.21317765 0.100951 19 54 14889 MT_Ala 3_flank no 276 241 269 27.641076 328.555209 178.0981425 2.25065939 -0.314447 19 55 7202 snR64 snR64 yes 301 76 90 37.788721 297.884037 167.836379 2.224886101 0.10815 19 56 10469 RUF8 RUF8 yes 1151 271 292 41.959365 354.030979 197.995172 2.2966546 -0.353018 19 57 11381 "rRNA(18S,5.8S,25S)" 25S yes 7956 3791 3808 55921.20524 9881.908978 32901.55711 4.517216452 1.723644 19 58 8698 LSR1 / U2 RNA U2 yes 1375 131 146 104.477423 327.227506 215.8524645 2.334157012 0.230351 19 59 3265 Thr2 ThrCGT 5_flank no 272 30.174017 289.095675 159.634846 2.203127698 0.012681 19 60 14201 MT_COB exon6/3_flank no 7308 7201 7227 30.231092 354.000339 192.1157155 2.283562893 -0.408751 19 61 20340 YER093C-A spliced yes 40 1 17 36.328107 308.758799 172.543453 2.236898485 0.004366 19 62 19889 Positive Control 5 no 21 NA #VALUE! 87.209121 328.731852 207.9704865 2.318001708 0.115188 19 63 15448 YBL087C intron no 604 121 137 31.708141 278.796512 155.2523265 2.191038117 0.131256 19 64 4249 telomerase RNA telomerase yes 1501 281 302 31.346309 290.43048 160.8883945 2.206524718 0.044 19 65 2010 Lys3 LysTTT_i 5_flank/tRNA no 296 32.980164 263.709672 148.344918 2.171272673 0.273286 19 66 21132 YNL147W spliced yes 40 1 17 123.320979 305.507281 214.41413 2.331253402 0.491099 19 67 8725 LSR1 / U2 RNA U2 yes 1375 266 278 99.806542 312.969231 206.3878865 2.314684204 0.305162 19 68 19875 Negative Control no 60 NA #VALUE! 36.507529 322.140206 179.3238675 2.253638097 -0.113727 19 69 10383 RUF7 3_flank no 700 42.57097 307.076213 174.8235915 2.242600038 0.03572 19 70 10565 RUF8 RUF8 yes 1151 751 763 57.779761 298.234037 178.006899 2.250436835 0.181341 19 71 8918 LSR1 / U2 RNA 3_flank no 1375 33.213615 321.640167 177.426891 2.249019443 -0.132879 19 72 15133 MT_Phe 3_flank no 265 181 209 27.424505 341.532093 184.478299 2.265945286 -0.393982 19 73 15655 YBR189W intron no 513 241 257 37.562656 289.965028 163.763842 2.214218019 0.174281 19 74 20192 YDL219W spliced yes 40 21 40 27.552743 313.367255 170.459999 2.231622482 -0.235829 19 75 279 Arg4 ArgCCT 5_flank/tRNA no 272 29.525022 269.96866 149.746841 2.175357669 0.070097 19 76 10577 RUF8 RUF8 yes 1151 811 828 41.497999 304.919637 173.208818 2.238569998 0.051474 19 77 20741 YJL191W spliced yes 40 21 36 29.400759 281.775715 155.588237 2.19197676 0.006543 19 78 11132 "rRNA(18S,5.8S,25S)" 18S yes 7956 2546 2563 237.491019 631.76013 434.6255745 2.638115278 -0.422308 19 79 21609 copy of SH7090 no 455 37.247312 310.012078 173.629695 2.239624002 -0.004671 19 80 5529 snR33 5_flank no 383 29.188393 327.548723 178.368558 2.251318301 -0.251921 19 81 15945 YDL125C intron no 211 81 96 52.808114 284.127809 168.4679615 2.226517321 0.284109 19 82 12657 MT_15S 15S yes 1848 1606 1634 28.812342 327.231564 178.021953 2.250473561 -0.263678 19 83 5732 snR34 3_flank no 750 32.397372 294.843207 163.6202895 2.213837157 0.050676 19 84 201 Arg2 ArgACG_ii 3_flank no 273 33.936748 369.97913 201.957939 2.30526093 -0.507263 19 85 9160 snR7 U5 RNA U5 yes 415 71 88 35.417802 302.009689 168.7137455 2.227150467 0.049356 19 86 18309 YML073C intron no 515 381 400 35.004913 324.80896 179.9069365 2.255047908 -0.140617 19 87 10164 RUF6 RUF6 yes 1251 666 680 52.356369 284.835061 168.595715 2.226846532 0.275437 19 88 21857 copy of SH17802 no 176 75.063451 369.623264 222.3433575 2.347024159 -0.240785 19 89 6582 snR47 snR47 yes 299 16 32 30.442967 258.022204 144.2325855 2.159063389 0.177938 19 90 6954 snR58 3_flank no 296 30.238493 279.015068 154.6267805 2.189284713 0.063307 19 91 19765 Negative Control no 60 NA #VALUE! 40.882252 293.220112 167.051182 2.222849553 0.159427 19 92 20550 YGR225W spliced yes 40 13 29 38.878944 289.331894 164.105419 2.215122922 0.192138 19 93 2051 Lys4 LysTTT_ii 5_flank no 296 47.780218 280.22722 164.003719 2.214853696 0.303129 19 94 3897 RNase MRP 5_flank no 540 34.374253 377.000877 205.687565 2.313208037 -0.557463 19 95 19152 YPL075W intron no 851 561 575 96.766228 402.676519 249.7213735 2.397455715 -0.283692 19 96 15325 YAL003W intron no 466 301 323 34.088404 360.443367 197.2658855 2.295051986 -0.433897 19 97 14308 MT_VAR1 VAR1 yes 1467 826 850 29.948856 322.724088 176.336472 2.246342148 -0.197743 19 98 18959 YOL127W intron no 514 361 382 31.33044 291.816362 161.573401 2.208369867 0.034707 19 99 8202 snoRNA cluster 3; intergenic no 743 521 535 66.237746 335.107267 200.6725065 2.302487875 -0.064548 19 100 11818 "rRNA(18S,5.8S,25S)" 25S yes 7956 5976 5994 32.077292 293.759178 162.918235 2.211969696 0.047089 19 101 4327 telomerase RNA telomerase yes 1501 671 690 562.387356 664.392937 613.3901465 2.787736795 0.457139 19 102 16829 YGL178W intron no 740 361 378 28.50499 276.666517 152.5857535 2.183513987 -0.017166 19 103 11752 "rRNA(18S,5.8S,25S)" 25S yes 7956 5646 5664 4379.645264 11428.74784 7904.196554 3.897857731 -1.62889 19 104 4412 telomerase RNA telomerase yes 1501 1096 1113 34.294305 357.103162 195.6987335 2.291588015 -0.407334 20 2 9573 RUF3 RUF3 yes 631 251 267 31.5986 672.964012 352.281306 2.546889598 -2.094344 20 3 12355 5S rRNA NTS2 no 1420 731 750 31.474498 326.486234 178.980366 2.252805392 -0.192106 20 4 12701 MT_ORF 8 ORF8 yes 491 181 205 29.197139 299.295361 164.24625 2.215495463 -0.085524 20 5 2701 Pro4 ProTGG_iii 3_flank no 302 32.245974 272.469501 152.3577375 2.182864515 0.191084 20 6 19827 Negative Control no 60 NA #VALUE! 35.262923 276.922254 156.0925885 2.193382283 0.254632 20 7 3015 Ser2 SerAGA_ii tRNA yes 282 36 e23 30.89975 278.644997 154.7723735 2.189693443 0.098686 20 8 12521 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 211 229 32.863325 286.910791 159.887058 2.203813311 0.1158 20 9 11375 "rRNA(18S,5.8S,25S)" 25S yes 7956 3761 3778 11749.70675 14296.27542 13022.99109 4.114710743 -0.798344 20 10 8860 LSR1 / U2 RNA U2 yes 1375 941 955 75.516269 314.113544 194.8149065 2.289622184 0.150409 20 11 5331 snR30 snR30 yes 801 506 522 40.768033 312.736596 176.7523145 2.247365109 -0.020544 20 12 15170 MT_Val 3_flank no 276 226 254 32.374103 305.157399 168.765751 2.227284316 -0.013474 20 13 11860 "rRNA(18S,5.8S,25S)" 25S yes 7956 6186 6202 34752.59835 24616.30035 29684.44935 4.472528997 -0.374385 20 14 6143 snR39B snR39B yes 296 56 75 47.755427 316.619303 182.187365 2.260518255 -0.026417 20 15 20397 YFR024C-A spliced yes 40 5 24 47.862971 345.202591 196.532781 2.293435 -0.253132 20 16 15978 YDL136W intron no 505 141 158 34.58452 318.789041 176.6867805 2.247204057 -0.094128 20 17 20230 YDR139C spliced yes 40 1 18 34.78386 326.079261 180.4315605 2.256312505 -0.152102 20 18 7718 snoRNA cluster1 snR77 yes 1574 386 403 28.707846 266.649382 147.678614 2.169317608 0.041635 20 19 7165 snR63 3_flank no 455 28.829906 295.302941 162.0664235 2.209693048 -0.086362 20 20 10957 "rRNA(18S,5.8S,25S)" 18S yes 7956 1671 1689 192.683439 512.551409 352.617424 2.547303768 -0.222207 20 21 311 Arg4 ArgCCT 3_flank no 272 39.502741 293.516953 166.509847 2.221439922 0.153466 20 22 12356 5S rRNA NTS2 no 1420 736 754 29.002492 298.702022 163.852257 2.214452428 -0.092329 20 23 15994 YDL136W 3_exon no 505 461 477 31.186332 298.330645 164.7584885 2.216847799 -0.010756 20 24 21413 Ser3 spliced yes 40 29 40 39.787854 278.898994 159.343424 2.202334145 0.294272 20 25 19350 YPL249C intron no 337 141 157 42.04977 297.989331 170.0195505 2.230498864 0.116918 20 26 11083 "rRNA(18S,5.8S,25S)" 18S yes 7956 2301 2319 23221.19556 18224.70989 20722.95273 4.316451636 -0.369099 20 27 2671 Pro4 ProTGG_iii tRNA yes 302 22 37 36.820534 290.199375 163.5099545 2.213544198 0.164022 20 28 3976 RNase MRP RNaseMRP yes 540 296 311 42.168145 294.70477 168.4364575 2.226436099 0.148143 20 29 6670 snR48 3_flank no 313 31.452974 323.940868 177.696921 2.249679903 -0.173046 20 30 21660 copy of SH9190 no 415 31.457946 305.45914 168.458543 2.22649304 -0.045178 20 31 5049 snR10 3_flank no 445 35.770513 303.750527 169.76052 2.229836697 0.039255 20 32 1986 Lys2 LysCTT_ii 3_flank no 273 31.543482 325.095564 178.319523 2.251198894 -0.18065 20 33 171 Arg2 ArgACG_ii 5_flank no 273 31.582444 281.475296 156.52887 2.19459445 0.109502 20 34 14540 MT_21S 21S_rRNA3 yes 4639 2311 2339 29.443586 315.533846 172.488716 2.236760689 -0.174025 20 35 17537 YJL177W intron no 417 141 158 31.544766 290.296423 160.9205945 2.206611628 0.051441 20 36 12641 MT_15S 15S yes 1848 1366 1392 27.207915 315.223799 171.215857 2.233543984 -0.263263 20 37 5876 snR35 3_flank no 740 44.203042 294.717061 169.4600515 2.229067334 0.15376 20 38 8965 snR17a / U3a U3a yes 690 111 130 29.178327 314.669584 171.9239555 2.235336395 -0.178425 20 39 8776 LSR1 / U2 RNA U2 yes 1375 521 537 35.442453 277.694221 156.568337 2.194703939 0.25481 20 40 801 Glu1 GluCTC tRNA yes 272 21 37 39.533473 302.622383 171.077928 2.233193982 0.068177 20 41 14657 MT_21S 21S_rRNA4 yes 4639 4066 4084 30.916298 291.21549 161.065894 2.207003587 0.024607 20 42 16229 YDR381W intron no 866 481 498 30.702299 276.387311 153.544805 2.186235127 0.099559 20 43 9937 RUF5-1 RUF5-1 yes 975 491 507 33.55725 303.58888 168.573065 2.226788183 0.014124 20 44 378 Asn1 AsnGTT 5_flank no 274 30.208735 318.019212 174.1139735 2.240833627 -0.161681 20 45 19623 RNA14 1.1 RNA14 1.1 yes 401 361 378 32.027435 295.380819 163.704127 2.214059628 0.035329 20 46 21855 copy of SH17800 no 176 37.941294 345.171793 191.5565435 2.282296992 -0.301457 20 47 6195 snR40 snR40 yes 297 36 51 55.093517 276.799995 165.946756 2.219968767 0.36349 20 48 7642 snoRNA cluster1 5_flank no 1574 6 25 29.701941 311.136943 170.419442 2.231519139 -0.139066 20 49 5954 snR36 snR36 yes 555 226 243 34.761499 313.687299 174.224399 2.241108975 -0.052145 20 50 10860 "rRNA(18S,5.8S,25S)" 18S yes 7956 1186 1204 58.196744 301.281148 179.738946 2.254642191 0.15716 20 51 12885 MT_COX1 ai1 no 13084 2476 2497 29.791768 308.2824 169.037084 2.227981992 -0.118943 20 52 19633 RNA14 2.2 RNA14 2.2 yes 401 161 179 29.812652 295.363845 162.5882485 2.211089153 -0.039394 20 53 18504 YMR194W intron no 563 441 458 27.785119 293.460038 160.6225785 2.205806593 -0.13538 20 54 2016 Lys3 LysTTT_i tRNA/intron no 296 26 i4 35.864147 277.711735 156.787941 2.195312657 0.261826 20 55 62 Ala2 AlaTGC 5_flank no 273 35.842731 266.647241 151.244986 2.179680986 0.341277 20 56 21579 copy of SH5868 no 740 54.206905 337.829863 196.018384 2.292296804 -0.160311 20 57 3902 RNase MRP 5_flank no 540 35.916262 300.715148 168.315705 2.22612464 0.065759 20 58 4391 telomerase RNA telomerase yes 1501 991 1010 31.936333 300.280916 166.1086245 2.220392182 0.002062 20 59 15037 MT_COX 2; ORF1 ORF1exon1 yes 2427 1156 1178 32.008631 304.708239 168.358435 2.22623488 -0.022525 20 60 10691 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 341 359 36.096641 267.567179 151.83191 2.181363055 0.342307 20 61 3576 Tyr2 TyrGTA_ii 3_flank no 289 29.880901 303.905857 166.893379 2.222439108 -0.089498 20 62 21457 copy of SH553 no 272 31.683542 281.452695 156.5681185 2.194703333 0.112987 20 63 7068 snR62 3_flank no 300 37.350173 286.720614 162.0353935 2.209609888 0.19974 20 64 3352 Thr3 ThrTGT_i 3_flank no 272 46.811036 304.195902 175.503469 2.244285705 0.075092 20 65 5911 snR36 snR36 yes 555 11 32 32.585723 352.393356 192.4895395 2.284407134 -0.374904 20 66 10210 RUF6 RUF6 yes 1251 896 908 68.357411 289.555429 178.95642 2.252747283 0.312113 20 67 20613 YHR079C-A spliced yes 40 17 34 47.64871 327.650479 187.6495945 2.27334763 -0.117372 20 68 20096 YDL029W spliced yes 40 9 26 28.353679 319.210166 173.7819225 2.240004597 -0.23474 20 69 13551 MT_COX1 intronic no 13084 12466 12480 36.242196 274.45498 155.348588 2.19130731 0.29532 20 70 9077 snR14 / U4 RNA U4 yes 360 1 15 40.429734 281.106393 160.7680635 2.206199781 0.276294 20 71 16958 YGR029W intron/exon no 183 121 138 32.867232 290.481411 161.6743215 2.208641047 0.093152 20 72 19543 CBP1 1.2 CBP1 1.2 yes 401 361 382 27.150399 325.731074 176.4407365 2.246598862 -0.317256 20 73 7299 snR66 5_flank/snR66 no 286 29.237792 310.286667 169.7622295 2.22984107 -0.150474 20 74 12868 MT_COX1 ai1 no 13084 2221 2245 27.277883 320.056706 173.6672945 2.239718039 -0.280008 20 75 15104 MT_COX 2; ORF1 ORF2exon2 yes 2427 2161 2182 29.223536 297.081346 163.152441 2.212593576 -0.073287 20 76 18554 YMR230W 3_exon no 510 461 475 67.073518 304.588097 185.8308075 2.269117714 0.17737 20 77 17166 YHR016C intron no 268 161 180 31.079833 338.147437 184.613635 2.266263774 -0.28406 20 78 19820 Negative Control no 60 NA #VALUE! 38.959942 279.431669 159.1958055 2.201931621 0.28085 20 79 2739 Pro5 ProTGG_iv tRNA yes 303 46 58 79.667918 295.726865 187.6973915 2.273458237 0.321154 20 80 13444 MT_COX1 intronic no 13084 10861 10880 29.0039 325.049175 177.0265375 2.248038375 -0.244439 20 81 3568 Tyr2 TyrGTA_ii 3_flank no 289 28.914543 265.938157 147.42635 2.168575113 0.057312 20 82 2180 Met2 MetCAT_ii tRNA yes 272 31 47 72.085087 304.230264 188.1576755 2.274521939 0.209311 20 83 1031 Gly2 GlyCCC_ii 3_flank no 272 34.3592 285.186593 159.7728965 2.203503109 0.173379 20 84 15065 MT_COX 2; ORF1 ORF1exon1 yes 2427 1576 1595 28.271195 314.655375 171.463285 2.23417114 -0.211322 20 85 7544 snR79 snR79 yes 284 61 77 39.404571 297.79534 168.5999555 2.226857456 0.112805 20 86 19484 ADH1 ADH1 yes 400 381 398 33.329786 294.249023 163.7894045 2.214285804 0.084019 20 87 3702 Val3 ValCAC 5_flank/tRNA no 273 29.268993 289.206916 159.2379545 2.20204659 -0.0351 20 88 12043 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7101 7118 206.44544 494.428702 350.437071 2.544610042 -0.088259 20 89 11843 "rRNA(18S,5.8S,25S)" 25S yes 7956 6101 6114 7259.215494 3492.405649 5375.810572 3.730443957 0.963029 20 90 18135 YLR406C intron no 449 81 98 37.597582 317.994273 177.7959275 2.249921809 -0.074848 20 91 2275 Phe2 PheGAA_ii 5_flank no 292 30.084238 301.695103 165.8896705 2.219819345 -0.068974 20 92 10524 RUF8 RUF8 yes 1151 546 565 29.902572 294.467098 162.184835 2.210010243 -0.030651 20 93 18643 YNL112W exon/intron no 1102 41 57 38.763889 332.169369 185.466629 2.268265778 -0.19308 20 94 10945 "rRNA(18S,5.8S,25S)" 18S yes 7956 1611 1624 69.526184 309.324592 189.425388 2.277438185 0.153205 20 95 1372 Leu1 LeuCAA_i 5_flank no 315 31.868865 303.388918 167.6288915 2.224348873 -0.019105 20 96 4468 telomerase RNA 3_flank no 1501 32.22352 320.493611 176.3585655 2.246396558 -0.136585 20 97 16166 YDR139C exon/intron no 173 41 60 32.669695 381.343558 207.0066265 2.315984248 -0.595269 20 98 13603 MT_ATP8/AAP1 MT_AAP1 yes 347 181 198 31.266542 243.68756 137.477051 2.138230208 0.293193 20 99 15373 YBL027W intron no 484 221 237 29.772924 287.99141 158.882167 2.201075155 -0.002967 20 100 8465 snoRNA cluster 5 3_flank no 586 491 508 31.984647 266.129807 149.057227 2.173353038 0.213497 20 101 1105 Gly4 GlyTCC tRNA yes 272 1 13 339.601168 488.057939 413.8295535 2.616821502 0.426138 20 102 7507 snR71 3_flank no 290 28.40802 266.394003 147.4010115 2.168500464 0.024123 20 103 9172 snR7 U5 RNA U5 yes 415 131 147 47.960369 343.735099 195.847734 2.291918551 -0.241501 20 104 2683 Pro4 ProTGG_iii tRNA yes 302 52 66 66.84386 377.37834 222.1111 2.346570263 -0.349116 21 2 18137 YLR406C intron no 449 121 138 38.155984 554.788087 296.4720355 2.471983735 -1.53906 21 3 19954 YBL050W spliced yes 40 25 40 59.766684 340.369913 200.0682985 2.301178279 -0.144641 21 4 9690 RUF4 RUF4 yes 988 226 240 31.348963 264.340315 147.844639 2.169805581 0.19129 21 5 17328 YIL004C intron/exon no 231 181 193 1229.313619 5743.864891 3486.589255 3.542400787 -2.047437 21 6 15434 YBL072C intron no 408 241 258 39.510545 333.618658 186.5646015 2.270829245 -0.202305 21 7 4190 telomerase RNA 5_flank/telomerase no 1501 28.804536 306.288217 167.5463765 2.22413504 -0.142184 21 8 8889 LSR1 / U2 RNA U2 yes 1375 1086 1098 34.94691 268.249032 151.597971 2.180693389 0.30382 21 9 21140 YNL162W spliced yes 40 9 26 32.715851 331.762061 182.238956 2.260641219 -0.215705 21 10 19452 CYC1 CYC1 yes 400 141 157 30.511636 282.475822 156.493729 2.194496939 0.060864 21 11 8361 snoRNA cluster4 3_flank no 638 591 608 32.458445 309.555784 171.0071145 2.233014179 -0.047763 21 12 18364 YMR079W 5_exon no 256 21 33 88.089234 353.095682 220.592458 2.34359066 -0.045444 21 13 4872 snR8 snR8 yes 390 141 157 40.504204 280.940109 160.7221565 2.206075751 0.278116 21 14 1143 His1 HisGTG 5_flank no 272 30.205496 320.62334 175.414418 2.244065287 -0.176809 21 15 12487 5S rRNA NTS1 no 1420 1391 1413 32.301208 302.402163 167.3516855 2.223630091 0.000964 21 16 11055 "rRNA(18S,5.8S,25S)" 18S yes 7956 2161 2174 151.101605 455.44335 303.2724775 2.481832999 -0.202886 21 17 4943 snR9 snR9 yes 387 121 137 30.461995 296.6774 163.5696975 2.213702851 -0.025064 21 18 17523 YJL136C intron no 560 421 440 28.498646 298.259007 163.3788265 2.213195772 -0.117582 21 19 10251 RUF6 3_flank no 1251 28.568696 311.683914 170.126305 2.23077147 -0.182921 21 20 3591 Val1 ValAAC_i 5_flank no 274 28.608422 290.075945 159.3421835 2.202330764 -0.074564 21 21 11468 "rRNA(18S,5.8S,25S)" 25S yes 7956 4226 4241 2572.538846 5423.350835 3997.944841 3.601836798 -1.037039 21 22 2031 Lys3 LysTTT_i 3_flank no 296 30.780638 284.941533 157.8610855 2.198275085 0.060114 21 23 5019 snR10 snR10 yes 445 126 143 37.16898 330.978396 184.073688 2.264991714 -0.187713 21 24 19319 YPL198W intron/exon no 509 441 463 26.806093 286.593083 156.699588 2.195067855 -0.160135 21 25 18531 YMR230W 5_exon no 510 1 17 43.839572 316.437589 180.1385805 2.255606736 -0.042469 21 26 16567 YER133W intron no 625 501 517 46.109406 305.90253 176.005968 2.245527394 0.057595 21 27 10522 RUF8 RUF8 yes 1151 536 558 31.286181 328.16044 179.7233105 2.25460441 -0.207231 21 28 16323 YDR471W intron no 484 221 233 41.948001 272.837106 157.3925535 2.196984181 0.363087 21 29 18929 YOL121C intron no 490 241 256 31.321022 295.831317 163.5761695 2.213720034 0.009234 21 30 10006 RUF5-1 3_flank no 975 33.488143 315.169975 174.329059 2.241369786 -0.07925 21 31 15070 MT_COX 2; ORF1 ORF1exon1 yes 2427 1651 1672 31.429391 308.842067 170.135729 2.230795526 -0.066405 21 32 16154 YDR129C 5_exon no 211 1 17 31.510824 313.61304 172.561932 2.236944994 -0.092212 21 33 3790 RNaseP 5_flank no 569 35.859686 284.049581 159.9546335 2.203996825 0.206008 21 34 3778 Val4 ValTAC 3_flank no 274 33.727014 312.054205 172.8906095 2.237771405 -0.051754 21 35 2714 Pro5 ProTGG_iv 5_flank no 303 31.540785 276.112978 153.8268815 2.187032236 0.142746 21 36 18773 YNL265C 5_exon no 205 1 18 42.160029 305.092948 173.6264885 2.239615982 0.052112 21 37 3886 RNaseP 3_flank no 569 33.493175 299.618972 166.5560735 2.221560474 0.045862 21 38 13804 MT_COB intronic no 7308 1246 1262 69.746887 388.232975 228.989931 2.359816386 -0.395669 21 39 8579 snR19 / U1 RNA U1 yes 868 391 407 52.409115 341.779286 197.0942005 2.294673845 -0.200407 21 40 17542 YJL177W intron no 417 241 258 41.597139 325.706887 183.652013 2.263995693 -0.129142 21 41 17075 YGR225W intron no 193 81 97 30.879823 276.441549 153.660686 2.186562768 0.108256 21 42 3929 RNase MRP RNaseMRP yes 540 61 78 30.680658 289.341643 160.0111505 2.204150248 0.028503 21 43 20044 YBR189W spliced yes 40 17 31 53.310475 301.113277 177.211876 2.248492823 0.133162 21 44 20022 YBR119W spliced yes 40 1 17 57.101418 296.193867 176.6476425 2.247107846 0.195605 21 45 19873 Negative Control no 60 NA #VALUE! 44.444509 324.890684 184.6675965 2.266390697 -0.11214 21 46 1178 His1 HisGTG 3_flank no 272 62.803053 383.87362 223.3383365 2.348963277 -0.420392 21 47 11637 "rRNA(18S,5.8S,25S)" 25S yes 7956 5071 5088 1726.594467 6923.339688 4324.967078 3.635982806 -1.931575 21 48 11120 "rRNA(18S,5.8S,25S)" 18S yes 7956 2486 2501 36.113913 271.015237 153.564575 2.186291042 0.319232 21 49 3675 Val2 ValAAC_ii 3_flank no 274 34.132256 276.068057 155.1001565 2.190612236 0.22629 21 50 18298 YML073C intron no 515 161 178 40.346216 298.162468 169.254342 2.228539819 0.111519 21 51 2002 Lys3 LysTTT_i 5_flank no 296 30.139857 319.678466 174.9091615 2.242812558 -0.173646 21 52 18612 YNL069C intron no 549 401 421 28.092501 292.67153 160.3820155 2.205155667 -0.114702 21 53 1662 Leu5 LeuCAA_v 3_flank no 315 50.633685 308.656015 179.64485 2.254414772 0.055199 21 54 11410 "rRNA(18S,5.8S,25S)" 25S yes 7956 3936 3952 80.292992 319.362198 199.827595 2.300655462 0.1405 21 55 3092 Ser3 SerCGA 3_flank no 301 29.935863 294.592689 162.264276 2.210222916 -0.030274 21 56 18315 YML085C 5_exon no 216 1 18 33.939685 289.147516 161.5436005 2.208289758 0.135155 21 57 11379 "rRNA(18S,5.8S,25S)" 25S yes 7956 3781 3798 53857.74042 8916.828934 31387.28468 4.496753746 1.84828 21 58 18663 YNL112W intron no 1102 441 457 33.908784 271.618872 152.763828 2.184020533 0.249345 21 59 18357 YMR033W intron no 186 61 80 31.872701 331.985454 181.9290775 2.259902117 -0.22818 21 60 4202 telomerase RNA telomerase yes 1501 46 60 87.675069 322.552553 205.113811 2.311994904 0.162569 21 61 20603 YHR077C spliced yes 40 1 18 31.677568 318.915166 175.296367 2.243772915 -0.131459 21 62 17283 YHR141C intron no 541 181 197 41.459505 286.403446 163.9314755 2.214662348 0.22643 21 63 20469 YGL187C spliced yes 40 9 30 29.125561 309.623223 169.374392 2.228847749 -0.150549 21 64 17644 YJR145C intron no 356 121 138 32.69282 308.963222 170.828021 2.23255911 -0.040048 21 65 15157 MT_Val 5_flank no 276 31 59 26.536025 339.563341 183.049683 2.262568981 -0.417728 21 66 20288 YDR471W spliced yes 40 21 35 43.619624 280.001287 161.8104555 2.20900658 0.294234 21 67 20122 YDL079C spliced yes 40 9 26 31.949345 326.170326 179.0598355 2.252998181 -0.183513 21 68 6941 snR58 snR58 yes 296 66 82 31.026992 318.093718 174.560355 2.241945616 -0.134204 21 69 21743 copy of SH12553 no 1848 26.386903 303.683961 165.035432 2.217577194 -0.261208 21 70 19253 YPL129W intron/exon no 205 141 159 59.718293 314.331222 187.0247575 2.2718991 0.056301 21 71 10713 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 451 467 54.283096 314.655537 184.4693165 2.265924139 0.024065 21 72 4042 SRP SRP yes 875 101 121 26.980113 291.888914 159.4345135 2.202582341 -0.173913 21 73 11721 "rRNA(18S,5.8S,25S)" 25S yes 7956 5491 5504 195.271076 332.956365 264.1137205 2.421790963 0.652801 21 74 8043 snoRNA cluster 2 intergenic no 739 451 472 31.022808 293.398304 162.210556 2.210079113 0.014449 21 75 6127 snR39B 5_flank no 296 52.739739 331.736411 192.238075 2.283839409 -0.121336 21 76 7117 snR63 snR63 yes 455 91 112 28.909934 306.139581 167.5247575 2.224078998 -0.137476 21 77 17033 YGR183C intron no 313 101 115 30.806701 273.055764 151.9312325 2.181647061 0.120982 21 78 17669 YKL006C intron no 241 121 138 32.739487 300.741318 166.7404025 2.222040846 0.025177 21 79 16354 YDR500C intron no 439 361 383 32.744015 304.809408 168.7767115 2.227312521 -0.00595 21 80 4659 snR3 3_flank no 395 32.749909 327.848376 180.2991425 2.255993661 -0.185947 21 81 4492 U3b (snR17b) U3b yes 662 16 37 30.761824 289.134554 159.948189 2.203979327 0.03258 21 82 6200 snR40 snR40 yes 297 61 78 35.559544 306.39105 170.975297 2.232933367 0.015415 21 83 11392 "rRNA(18S,5.8S,25S)" 25S yes 7956 3846 3864 8797.376968 12363.11735 10580.24716 4.024495813 -0.909674 21 84 15427 YBL072C intron no 408 101 117 55.516387 306.37151 180.9439485 2.257544063 0.099796 21 85 13779 MT_COB intronic no 7308 871 895 28.14233 365.404058 196.773194 2.293965935 -0.516751 21 86 8494 snR19 / U1 RNA 5_flank no 868 33.569025 307.127402 170.3482135 2.231337583 -0.014369 21 87 12232 5S rRNA NTS2 no 1420 116 133 29.488993 252.806438 141.1477155 2.149673853 0.148621 21 88 7835 snoRNA cluster1 snR74 yes 1574 971 990 32.916804 281.095277 157.0060405 2.195916361 0.155201 21 89 14412 MT_21S 21S_rRNA3 yes 4639 391 410 250.167673 423.556652 336.8621625 2.527452232 0.392981 21 90 13686 MT_ORF 5 ORF5 yes 331 136 159 26.786312 323.381866 175.084089 2.243246681 -0.321553 21 91 2978 Ser1 SerAGA_i 3_flank no 283 37.372499 279.695531 158.534015 2.200122459 0.261293 21 92 1234 Ile1 IleAAT 3_flank no 274 33.501709 300.621979 167.061844 2.222877271 0.037709 21 93 5917 snR36 snR36 yes 555 41 60 31.586739 256.848691 144.217715 2.15901861 0.241315 21 94 3245 Thr1 ThrAGT 3_flank no 273 31.617216 306.671173 169.1441945 2.228257096 -0.047195 21 95 14667 MT_21S 21S_rRNA4 yes 4639 4216 4242 30.011896 329.928539 179.9702175 2.255200642 -0.237728 21 96 7593 snR189 snR189 yes 389 36 52 50.379103 359.86611 205.1226065 2.312013526 -0.345618 21 97 10761 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 691 704 42.702371 337.64163 190.1720005 2.279146575 -0.223583 21 98 18176 YLR448W intron no 484 301 320 31.132707 257.113385 144.123046 2.158733432 0.217447 21 99 18606 YNL069C intron no 549 281 300 29.627146 306.129419 167.8782825 2.224994517 -0.111826 21 100 8949 snR17a / U3a U3a yes 690 31 50 37.547864 313.267416 175.40764 2.244048505 -0.033124 21 101 7487 snR71 snR71 yes 290 51 70 30.101844 334.391693 182.2467685 2.260659836 -0.269696 21 102 10048 RUF6 RUF6 yes 1251 86 103 37.933169 343.172316 190.5527425 2.280015204 -0.285552 21 103 4490 U3b (snR17b) U3b yes 662 6 23 32.134832 273.20435 152.669591 2.183752542 0.18252 21 104 5509 snR32 3_flank no 388 34.013057 497.725893 265.869475 2.424668478 -1.301732 22 2 1947 Lys2 LysCTT_ii 5_flank no 273 29.4734 515.966087 272.7197435 2.43571658 -1.434062 22 3 5172 snR13 snR13 yes 324 16 37 33.672994 309.640412 171.656703 2.234660767 -0.033228 22 4 521 Cys1 CysGCA 5_flank no 272 33.497543 301.180923 167.339233 2.223597774 0.033066 22 5 19189 YPL079W intron/exon no 521 461 480 35.436691 306.907461 171.172076 2.233432918 0.00982 22 6 14595 MT_21S Sce1 no 4639 3136 3155 29.957781 321.172446 175.5651135 2.244438222 -0.188558 22 7 5435 snR31 3_flank no 425 30.84205 311.341133 171.0915915 2.233228666 -0.100942 22 8 893 Glu3 GluTTC_ii 5_flank no 272 30.686381 318.252959 174.46967 2.24171994 -0.146653 22 9 17569 YJL189W intron no 486 381 401 34.69906 297.523724 166.111392 2.220399418 0.077851 22 10 13805 MT_COB intronic no 7308 1261 1278 30.42679 284.794168 157.610479 2.197585089 0.045653 22 11 2222 Phe1 PheGAA_i 5_flank/tRNA no 292 32.379969 299.43098 165.9054745 2.219860717 0.021687 22 12 20000 YBR078W spliced yes 40 5 17 44.644761 277.94869 161.2967255 2.207625551 0.316913 22 13 6769 snR50 snR50 yes 290 21 37 30.170845 306.726357 168.448601 2.226467408 -0.096423 22 14 284 Arg4 ArgCCT tRNA yes 272 16 30 32.188658 269.93023 151.059444 2.179147882 0.204495 22 15 17388 YIL069C intron no 509 101 117 30.15338 280.050088 155.101734 2.190616653 0.053997 22 16 13101 MT_COX1 ai3 no 13084 5716 5738 30.194995 311.752766 170.9738805 2.232929769 -0.125515 22 17 18890 YOL120C 5_exon no 547 1 18 28.196527 302.579355 165.387941 2.21850384 -0.153292 22 18 2577 Pro2 ProTGG_i 3_flank no 303 30.286221 299.716738 165.0014795 2.217487838 -0.049873 22 19 20894 YLR287C-A spliced yes 40 13 30 30.303343 308.36002 169.3316815 2.228738221 -0.101628 22 20 14580 MT_21S intronic no 4639 2911 2932 34.426068 352.573803 193.4999355 2.286680825 -0.371318 22 21 2240 Phe1 PheGAA_i tRNA yes 292 57 71 38.583234 277.061331 157.8222825 2.19816832 0.29788 22 22 15602 YBR119W 5_exon no 189 1 18 44.896622 298.510458 171.70354 2.234779249 0.120897 22 23 2903 Pro8 ProTGG_vii tRNA yes 305 37 i12 34.690342 299.044262 166.867302 2.222371244 0.065149 22 24 10612 RUF8 3_flank no 1151 49.534484 306.251926 177.893205 2.25015936 0.07045 22 25 5519 snR32 3_flank no 388 39.27575 290.86109 165.06842 2.217663994 0.178337 22 26 17567 YJL189W intron no 486 341 358 31.015826 310.968893 170.9923595 2.232976705 -0.092872 22 27 5195 snR13 3_flank no 324 31.095787 286.555104 158.8254455 2.200920082 0.060354 22 28 18403 YMR125W intron no 422 201 217 35.364855 294.916549 165.140702 2.217854126 0.107472 22 29 1606 Leu4 LeuCAA_iv 3_flank no 314 54.549471 289.098489 171.82398 2.235083774 0.246295 22 30 823 Glu1 GluCTC 3_flank no 272 40.79477 305.88681 173.34079 2.238900772 0.041065 22 31 20215 YDR064W spliced yes 40 13 27 46.265641 322.698621 184.482131 2.265954307 -0.084406 22 32 2840 Pro7 ProTGG_vi tRNA yes 303 6 23 138.633796 376.444879 257.5393375 2.410843574 0.12227 22 33 18327 YML094W exon/intron no 183 41 61 31.527095 329.994467 180.760781 2.257104209 -0.217828 22 34 8856 LSR1 / U2 RNA U2 yes 1375 921 935 1098.235427 1264.177482 1181.206455 3.072325811 0.210157 22 35 12543 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7/3_flank no 664 541 567 29.38686 316.200648 172.793754 2.23752804 -0.179926 22 36 2704 Pro5 ProTGG_iv 5_flank no 303 31.449903 296.707565 164.078734 2.215052296 0.008076 22 37 14876 MT_Ala 5_flank no 276 46 74 29.232006 301.115242 165.173624 2.217940698 -0.095439 22 38 18881 YNR053C 3_exon no 631 601 616 35.512406 287.409475 161.4609405 2.208067478 0.172918 22 39 7671 snoRNA cluster1 snR78 yes 1574 151 170 31.168443 289.588779 160.378611 2.205146448 0.043402 22 40 2869 Pro7 ProTGG_vi 3_flank no 303 31.052606 284.169269 157.6109375 2.197586352 0.074297 22 41 15671 YBR191W intron no 488 61 79 30.905181 320.068138 175.4866595 2.244244107 -0.150598 22 42 11955 "rRNA(18S,5.8S,25S)" 25S yes 7956 6661 6674 197.147059 436.830708 316.9888835 2.501044032 0.114951 22 43 10021 RUF6 5_flank no 1251 57.64702 276.366654 167.006837 2.222734251 0.378753 22 44 7708 snoRNA cluster1 snR77 yes 1574 336 357 53.185069 344.808835 198.996952 2.298846424 -0.21889 22 45 20189 YDL219W spliced yes 40 9 30 30.286224 319.602258 174.944241 2.24289965 -0.168149 22 46 20104 YDL061C spliced yes 40 13 35 32.299283 394.581291 213.440287 2.329276396 -0.691349 22 47 15467 YBL087C intron no 604 501 522 28.214545 307.55899 167.8867675 2.225016467 -0.174036 22 48 7029 snR62 5_flank no 300 34.447252 297.979672 166.213462 2.220666195 0.071051 22 49 12339 5S rRNA NTS2 no 1420 651 671 34.535178 334.969167 184.7521725 2.266589554 -0.227912 22 50 17840 YKR094C intron no 468 241 258 30.470503 317.662849 174.066676 2.240715636 -0.150608 22 51 20027 YBR119W spliced yes 40 21 40 30.501803 305.519051 168.010427 2.225336236 -0.07777 22 52 19327 YPL218W intron no 239 101 120 28.414749 350.605699 189.510224 2.277632645 -0.410594 22 53 7599 snR189 snR189 yes 389 66 80 99.620461 351.069694 225.3450775 2.352848076 0.042046 22 54 12104 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7406 7422 57.231724 346.147228 201.689476 2.304683238 -0.202667 22 55 21378 Lys3_4 spliced yes 40 1 13 78.656819 281.997788 180.3273035 2.256061489 0.433034 22 56 18262 YML056C intron no 508 121 137 34.11971 284.699716 159.409713 2.20251478 0.169221 22 57 18219 YML025C 3_exon no 199 181 193 132.106791 314.849149 223.47797 2.349234718 0.471363 22 58 2609 Pro3 ProTGG_ii 5_flank/tRNA no 303 91.831028 345.902844 218.866936 2.340180158 0.02645 22 59 20009 YBR082C spliced yes 40 17 33 64.439606 310.040419 187.2400125 2.272398661 0.118211 22 60 11566 "rRNA(18S,5.8S,25S)" 25S yes 7956 4716 4729 119.059137 301.149694 210.1044155 2.32243518 0.500629 22 61 16520 YER131W 5_exon no 461 21 42 33.516502 347.107002 190.311752 2.279465607 -0.3301 22 62 9972 RUF5-1 RUF5-1 yes 975 666 683 33.246874 323.267952 178.257413 2.251047599 -0.144941 22 63 10651 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 141 158 38.827187 305.708079 172.267633 2.236203686 0.038185 22 64 7666 snoRNA cluster1 snR78 yes 1574 126 143 28.648712 277.524598 153.086655 2.184937334 -0.013475 22 65 20737 YJL191W spliced yes 40 5 22 41.871098 293.18773 167.529414 2.224091069 0.161918 22 66 2021 Lys3 LysTTT_i intron/tRNA no 296 i14 44 74.423963 339.518066 206.9710145 2.315909528 -0.043244 22 67 3535 Tyr2 TyrGTA_ii 5_flank no 289 31.874894 300.23525 166.055072 2.220252145 0.000331 22 68 15053 MT_COX 2; ORF1 ORF1exon1 yes 2427 1396 1418 28.108669 334.95689 181.5327795 2.258955057 -0.332459 22 69 20024 YBR119W spliced yes 40 9 24 47.531343 259.952468 153.7419055 2.186792259 0.509663 22 70 3551 Tyr2 TyrGTA_ii tRNA/intron no 289 24 i3 28.484241 300.894804 164.6895225 2.21666597 -0.130084 22 71 12448 5S rRNA NTS2 no 1420 1196 1210 45.338846 280.080805 162.7098255 2.211413779 0.297093 22 72 13612 MT_ATP8/AAP1 3_flank no 347 316 344 28.881628 336.009386 182.445507 2.261133173 -0.309908 22 73 2568 Pro2 ProTGG_i tRNA yes 303 46 58 73.629453 284.357482 178.9934675 2.252837181 0.384794 22 74 18233 YML026C intron no 501 261 278 32.87732 322.969005 177.9231625 2.250232489 -0.147282 22 75 5474 snR32 snR32 yes 388 31 50 28.858566 290.611044 159.734805 2.203399556 -0.063491 22 76 11253 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3151 3168 76.061632 302.685574 189.373603 2.277319442 0.244376 22 77 20888 YLR275W spliced yes 40 13 32 28.675844 309.953173 169.3145085 2.228694174 -0.16876 22 78 9775 RUF4 RUF4 yes 988 651 666 73.809315 316.366212 195.0877635 2.29023003 0.122755 22 79 17796 YKL186C intron/exon no 249 181 200 30.617335 282.046438 156.3318865 2.194047569 0.068263 22 80 2781 Pro6 ProTGG_v 5_flank/tRNA no 302 154.669273 335.478029 245.073651 2.389296621 0.450264 22 81 7146 snR63 snR63 yes 455 236 253 34.605592 288.66907 161.637331 2.208541671 0.1514 22 82 7190 snR64 snR64 yes 301 16 30 2775.862002 1633.632853 2204.747428 3.343358845 1.014587 22 83 18727 YNL147W intron no 220 81 98 34.498258 285.113477 159.8058675 2.203592721 0.178069 22 84 19044 YOR234C intron no 627 261 282 34.334329 368.654758 201.4945435 2.30426329 -0.49618 22 85 13405 MT_COX1 intronic no 13084 10276 10295 28.33007 334.008203 181.1691365 2.258084214 -0.319044 22 86 10181 RUF6 RUF6 yes 1251 751 763 54.967164 332.991107 193.9791355 2.287755019 -0.118833 22 87 14063 MT_COB bi4 no 7308 5131 5147 52.540152 322.537603 187.5388775 2.273091312 -0.049666 22 88 20967 YML026C spliced yes 40 13 32 29.408379 255.855002 142.6316905 2.15421603 0.130404 22 89 2723 Pro5 ProTGG_iv 5_flank/tRNA no 303 183.238501 384.878231 284.058366 2.453407585 0.303624 22 90 12504 MT_tRNA Pro 3_flank no 272 211 237 28.727037 286.762554 157.7447955 2.197955039 -0.052837 22 91 15915 YDL083C intron no 532 381 398 52.042142 310.59317 181.317656 2.258440096 0.045422 22 92 3249 Thr1 ThrAGT 3_flank no 273 40.740966 332.212972 186.476969 2.270625202 -0.186355 22 93 4343 telomerase RNA telomerase yes 1501 751 770 38.743777 305.867583 172.30568 2.236299594 0.036531 22 94 1840 Leu9 LeuTAG_ii 5_flank no 301 37.842193 299.978721 168.910457 2.227656537 0.0887 22 95 4747 snR5 5_flank no 404 29.9442 278.54374 154.24397 2.188208195 0.050363 22 96 15688 YBR191W intron no 488 401 425 32.021551 354.125565 193.073558 2.2857228 -0.3902 22 97 13821 MT_COB bi2 no 7308 1501 1522 30.559352 350.391227 190.4752895 2.279838642 -0.378954 22 98 10333 RUF7 RUF7 yes 700 276 293 30.930624 314.200156 172.56539 2.236953697 -0.114777 22 99 4005 SRP 5_flank no 875 29.405251 321.47006 175.4376555 2.244122815 -0.209702 22 100 17405 YIL069C intron/exon no 509 441 463 31.563245 305.354929 168.459087 2.226494443 -0.04106 22 101 9609 RUF3 RUF3/3_flank no 631 28.911084 310.004221 169.4576525 2.229061186 -0.160532 22 102 14584 MT_21S intronic no 4639 2971 2987 31.885899 309.774829 170.830364 2.232565066 -0.056899 22 103 9189 snR7 U5 RNA 3_flank no 415 33.848574 305.100033 169.4743035 2.229103858 0.005432 22 104 3830 RNaseP RNaseP yes 569 116 128 49.416269 400.037004 224.7266365 2.351654552 -0.620925 23 2 3845 RNaseP RNaseP yes 569 191 206 53.768858 418.10504 235.936949 2.372795959 -0.697698 23 3 13634 MT_ATP6 ATP6 yes 980 316 335 29.416364 285.652533 157.5344485 2.197375537 -0.010829 23 4 18268 YML056C intron no 508 241 257 36.738552 278.572954 157.655753 2.197709823 0.264148 23 5 12453 5S rRNA NTS2 no 1420 1221 1235 65.380919 343.172439 204.276679 2.310218789 -0.128657 23 6 10942 "rRNA(18S,5.8S,25S)" 18S yes 7956 1596 1613 35.157315 271.878544 153.5179295 2.186159104 0.285344 23 7 11638 "rRNA(18S,5.8S,25S)" 25S yes 7956 5076 5094 21809.39361 27588.30563 24698.84962 4.392676726 -1.134526 23 8 1363 Ile3 IleTAT_ii 3_flank no 333 34.703963 291.058361 162.881162 2.211870859 0.132205 23 9 2536 Pro2 ProTGG_i 5_flank no 303 32.46425 313.928113 173.1961815 2.238538313 -0.082351 23 10 20979 YML056C spliced yes 40 9 25 44.716457 304.880517 174.798487 2.242537669 0.062406 23 11 17544 YJL177W intron no 417 281 302 36.348951 323.877357 180.113154 2.255545431 -0.129152 23 12 17768 YKL180W 5_exon no 406 21 36 30.1252 285.538269 157.8317345 2.198194329 0.026701 23 13 16051 YDL191W intron no 591 481 503 28.033967 308.990254 168.5121105 2.226631118 -0.190195 23 14 2959 Ser1 SerAGA_i tRNA yes 283 26 e11 30.035895 318.896985 174.46644 2.241711899 -0.172748 23 15 21841 copy of SH17171 no 650 70.045565 322.866827 196.456196 2.293265731 0.050653 23 16 21551 copy of SH4564 no 662 36.116155 287.193538 161.6548465 2.20858873 0.181756 23 17 6488 snR46 5_flank no 397 42.227708 305.828829 174.0282685 2.240619799 0.045732 23 18 11208 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2926 2944 29.961722 284.72262 157.342171 2.196845138 0.022055 23 19 5924 snR36 snR36 yes 555 76 98 27.901484 310.773474 169.337479 2.22875309 -0.205218 23 20 9367 RUF1 RUF1 yes 750 411 427 33.97427 301.451559 167.7129145 2.224566506 0.036698 23 21 15731 YBR230C intron no 197 81 97 38.080851 274.008288 156.0445695 2.193248659 0.319837 23 22 5248 snR30 snR30 yes 801 91 107 69.049531 345.900201 207.474866 2.316965493 -0.124387 23 23 12779 MT_COX1 ai1 no 13084 886 908 28.16994 332.023205 180.0965725 2.255505448 -0.313989 23 24 4247 telomerase RNA telomerase yes 1501 271 290 30.433111 318.661494 174.5473025 2.241913142 -0.157669 23 25 3741 Val4 ValTAC 5_flank no 274 28.569356 310.663416 169.616386 2.229467806 -0.176859 23 26 2977 Ser1 SerAGA_i 3_flank no 283 29.767738 302.939585 166.3536615 2.221032364 -0.087597 23 27 1003 Gly2 GlyCCC_ii tRNA yes 272 6 22 72.297317 335.941648 204.1194825 2.309884459 -0.031947 23 28 4595 U3b (snR17b) 3_flank no 662 28.873685 308.73501 168.8043475 2.227383628 -0.15433 23 29 16837 YGL178W intron no 740 521 537 33.126606 305.291148 169.208877 2.228423143 -0.005042 23 30 6327 snR42 3_flank no 551 37.43539 306.906083 172.1707365 2.235959337 0.023924 23 31 15417 YBL059W intron no 169 61 75 33.328994 295.298598 164.313796 2.215674029 0.077438 23 32 14340 MT_VAR1 VAR1 yes 1467 1306 1330 29.213362 322.920915 176.0671385 2.245678306 -0.22483 23 33 13567 MT_COX1 exon6 yes 13084 12706 12722 33.57511 271.317111 152.4461105 2.183116348 0.241066 23 34 11347 "rRNA(18S,5.8S,25S)" 25S yes 7956 3621 3638 37.909361 263.819361 150.864361 2.178586658 0.411616 23 35 20291 YDR500C spliced yes 40 5 22 52.939482 361.079641 207.0095615 2.315990405 -0.33728 23 36 1175 His1 HisGTG 3_flank no 272 31.42041 296.351839 163.8861245 2.214542185 0.009305 23 37 12203 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7901 7918 39.874079 299.287175 169.580627 2.229376237 0.099924 23 38 10031 RUF6 RUF6 yes 1251 1 17 37.649404 310.491607 174.0705055 2.240725191 -0.008009 23 39 21115 YNL096C spliced yes 40 13 30 33.312772 313.830624 173.571698 2.239478912 -0.0709 23 40 16494 YER117W intron no 571 61 77 43.799525 311.999378 177.8994515 2.250174609 -0.003856 23 41 11654 "rRNA(18S,5.8S,25S)" 25S yes 7956 5156 5173 167.663347 463.644799 315.654073 2.499211398 -0.148272 23 42 18131 YLR406C 5_exon no 449 1 18 28.742506 282.527014 155.63476 2.1921066 -0.032185 23 43 5745 snR35 5_flank no 740 32.772585 268.947276 150.8599305 2.178573903 0.231955 23 44 17905 YLR061W intron no 489 161 182 34.728544 332.412867 183.5707055 2.263803377 -0.205998 23 45 19817 Negative Control no 60 NA #VALUE! 51.313936 291.56895 171.441443 2.234115813 0.208815 23 46 18780 YNL265C intron/exon no 205 141 162 28.442636 295.809076 162.125856 2.209852282 -0.109656 23 47 14241 MT_Ser 5_flank/tRNA no 290 91 107 32.633915 291.239254 161.9365845 2.209344975 0.080916 23 48 8531 snR19 / U1 RNA U1 yes 868 151 167 34.80138 323.908641 179.3550105 2.253713514 -0.133394 23 49 17783 YKL180W intron no 406 321 342 28.64173 282.614839 155.6282845 2.19208853 -0.038057 23 50 12860 MT_COX1 ai1 no 13084 2101 2123 28.704805 308.74477 168.7247875 2.22717889 -0.160513 23 51 18894 YOL120C intron no 547 81 97 59.251814 320.968707 190.1102605 2.279005557 0.000666 23 52 16638 YFR024C intron no 218 101 122 30.794192 350.15911 190.476651 2.279841747 -0.374146 23 53 12942 MT_COX1 ai2 no 13084 3331 3347 30.705664 296.559175 163.6324195 2.213869352 -0.016011 23 54 16746 YGL076C intron no 559 341 358 32.641314 303.971041 168.3061775 2.226100057 -0.000444 23 55 17608 YJL205C intron/exon no 243 181 198 32.453008 301.036362 166.744685 2.222052 0.014194 23 56 8185 snoRNA cluster 3; snR70 yes 743 436 452 44.628202 290.902665 167.7654335 2.224702483 0.190856 23 57 12173 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7751 7771 36.162311 296.398756 166.2805335 2.220841409 0.104316 23 58 294 Arg4 ArgCCT tRNA/3_flank no 272 29.875881 312.253778 171.0648295 2.233160729 -0.139566 23 59 3404 Thr4 ThrTGT_ii 3_flank no 272 27.715734 264.268022 145.991878 2.164328695 -0.010602 23 60 20127 YDL082W spliced yes 40 5 21 45.722222 304.921595 175.3219085 2.24383619 0.065205 23 61 5041 snR10 snR10/3_flank no 445 29.393496 332.861473 181.1274845 2.257984356 -0.274233 23 62 7841 snoRNA cluster1 snR74 yes 1574 1001 1018 31.136095 275.616542 153.3763185 2.185758309 0.125078 23 63 17708 YKL081W intron no 426 161 178 44.617238 288.458345 166.5377915 2.221512801 0.213966 23 64 21053 YMR143W spliced yes 40 13 30 28.585482 277.917718 153.2516 2.185405017 -0.018793 23 65 17762 YKL157W intron no 483 381 401 30.25335 306.67158 168.462465 2.226503151 -0.093243 23 66 2623 Pro3 ProTGG_ii intron/tRNA no 303 i30 48 107.425366 306.474421 206.9498935 2.315865207 0.396971 23 67 11179 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2781 2794 44.375168 266.389923 155.3825455 2.191402232 0.43504 23 68 18786 YNL301C intron no 532 61 77 46.407277 299.720536 173.0639065 2.238206503 0.114513 23 69 260 Arg3 ArgCCG 3_flank no 272 36.043297 269.091397 152.567347 2.183461594 0.330304 23 70 3728 Val3 ValCAC 3_flank no 273 27.591624 305.769068 166.680346 2.221884393 -0.200952 23 71 1128 Gly4 GlyTCC 3_flank no 272 30.732075 301.239461 165.985768 2.220070852 -0.043943 23 72 10715 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 461 474 90.988358 331.034578 211.011468 2.324306059 0.121736 23 73 4128 SRP SRP yes 875 531 543 87.298561 285.75612 186.5273405 2.270742498 0.44792 23 74 8194 snoRNA cluster 3; intergenic no 743 481 502 31.907715 336.133088 184.0204015 2.264865974 -0.258409 23 75 9474 RUF2 RUF2 yes 468 211 227 36.6947 293.075478 164.885089 2.217181383 0.138233 23 76 360 Arg5 ArgTCT 3_flank no 272 50.271484 290.13027 170.200877 2.230961794 0.216832 23 77 17124 YHR010W intron no 661 201 217 34.453119 298.995557 166.724338 2.221999002 0.06271 23 78 3955 RNase MRP RNaseMRP yes 540 191 206 42.208124 281.719631 161.9638775 2.209418165 0.274136 23 79 15502 YBR048W 5_exon no 611 1 18 40.293947 327.512987 183.903467 2.264589917 -0.148843 23 80 882 Glu3 GluTTC_ii 5_flank no 272 36.477181 310.70865 173.5929155 2.239531997 -0.01285 23 81 1468 Leu2 LeuCAA_ii tRNA/3_flank no 314 34.610492 311.633554 173.122023 2.238352318 -0.037714 23 82 19129 YPL075W intron no 851 101 117 38.581736 288.513453 163.5475945 2.213644161 0.197768 23 83 14794 MT_Lys; Arg1; Gly 5_flank/tRNALys no 682 91 112 28.768501 330.620878 179.6946895 2.254535243 -0.28424 23 84 2143 Met1 MetCAT_i 3_flank no 273 30.629166 312.672864 171.651015 2.234646376 -0.116033 23 85 3506 Tyr1 TyrGTA_i tRNA yes 289 55 67 42.127008 271.68771 156.907359 2.195643313 0.375271 23 86 474 Asp2 AspGTC_ii 5_flank no 272 34.087989 286.396071 160.24203 2.204776438 0.157312 23 87 7080 snR63 5_flank no 455 29.951835 309.426351 169.689093 2.229653928 -0.120167 23 88 8229 snoRNA cluster 3; 3_flank no 743 656 673 39.061388 270.330795 154.6960915 2.189479341 0.363756 23 89 20002 YBR078W spliced yes 40 13 29 38.571357 257.009231 147.790294 2.169645913 0.483415 23 90 13920 MT_COB bi3 no 7308 2986 3005 32.537795 303.643616 168.0907055 2.2255437 0.000904 23 91 1286 Ile2 IleTAT_i tRNA/3_flank no 333 66 80 39.417266 258.350512 148.883889 2.172847704 0.479534 23 92 7834 snoRNA cluster1 snR74 yes 1574 966 985 39.022311 345.55503 192.2886705 2.283953697 -0.3005 23 93 757 Gln4 GlnTTG_iii tRNA yes 272 56 70 49.566594 287.802492 168.684543 2.227075289 0.235192 23 94 11651 "rRNA(18S,5.8S,25S)" 25S yes 7956 5141 5154 49.491537 267.842536 158.6670365 2.20048671 0.432128 23 95 11024 "rRNA(18S,5.8S,25S)" 18S yes 7956 2006 2019 860.321343 926.45622 893.3887815 2.951040495 0.408443 23 96 17828 YKR094C 5_exon no 468 1 17 37.309392 300.077489 168.6934405 2.227098196 0.086486 23 97 20347 YER102W spliced yes 40 5 21 77.027207 317.401484 197.2143455 2.294938503 0.135069 23 98 20949 YLR448W spliced yes 40 13 25 52.831825 306.616176 179.7240005 2.254606077 0.08314 23 99 16692 YGL030W 3_exon no 330 301 319 29.123219 286.619628 157.8714235 2.198303525 -0.030891 23 100 3546 Tyr2 TyrGTA_ii tRNA yes 289 1 13 65.179718 323.0432 194.111459 2.288051174 0.019123 23 101 19498 YPT1 YPT1 yes 402 261 278 29.544734 282.229175 155.8869545 2.192809772 0.011992 23 102 7368 snR68 snR68 yes 336 61 82 29.663642 291.720215 160.6919285 2.205994063 -0.025811 23 103 6595 snR47 snR47 yes 299 81 97 29.717359 271.413048 150.5652035 2.177724615 0.07308 23 104 17741 YKL156W 3_exon no 450 401 421 29.708272 353.277222 191.492747 2.282152329 -0.410921 24 2 18940 YOL121C 3_exon no 490 461 478 31.882093 322.505844 177.1939685 2.248448935 -0.156463 24 3 14827 MT_Lys; Arg1; Gly 3_flank no 682 586 610 29.509004 307.662163 168.5855835 2.226820433 -0.125193 24 4 848 Glu2 GluTTC_i tRNA yes 272 6 23 8116.000243 10428.07194 9272.036093 3.967175114 -0.724429 24 5 16282 YDR447C intron no 414 321 340 30.097511 299.662089 164.8798 2.217167452 -0.056064 24 6 5958 snR36 snR36 yes 555 246 263 41.400488 312.594737 176.9976125 2.247967408 -0.017107 24 7 16726 YGL033W intron no 170 101 117 35.823737 303.800017 169.811877 2.229968062 0.039468 24 8 5217 snR30 5_flank no 801 30.396688 286.879991 158.6383395 2.200408155 0.034398 24 9 15730 YBR230C intron no 197 61 79 32.277254 289.16659 160.721922 2.206075117 0.082591 24 10 16843 YGL178W intron no 740 641 660 32.150718 293.190492 162.670605 2.211309082 0.053045 24 11 9038 snR17a / U3a U3a yes 690 476 490 85.328289 354.254863 219.791576 2.342011043 -0.071903 24 12 921 Glu3 GluTTC_ii 3_flank no 272 27.946702 309.025898 168.4863 2.226564593 -0.195193 24 13 4798 snR5 snR5 yes 404 161 180 29.935073 294.33811 162.1365915 2.209881039 -0.02871 24 14 1274 Ile2 IleTAT_i intron yes 333 i29 i45 48.217081 302.389447 175.303264 2.243790002 0.097335 24 15 19831 Negative Control no 60 NA #VALUE! 29.835983 282.512758 156.1743705 2.193609764 0.025897 24 16 15048 MT_COX 2; ORF1 ORF1exon1 yes 2427 1321 1340 29.774831 288.581311 159.178071 2.201883237 -0.005592 24 17 11806 "rRNA(18S,5.8S,25S)" 25S yes 7956 5916 5931 97.325157 365.600624 231.4628905 2.364481372 -0.063862 24 18 13315 MT_COX1 ai5a no 13084 8926 8948 27.620596 322.449248 175.034922 2.243124705 -0.280682 24 19 910 Glu3 GluTTC_ii tRNA/3_flank no 272 55.779946 293.573766 174.676856 2.242235366 0.211658 24 20 3891 RNaseP 3_flank no 569 55.724378 346.361102 201.04274 2.303288395 -0.213755 24 21 5841 snR35 snR35 yes 740 391 407 57.827834 325.235552 191.531693 2.282240648 -0.041407 24 22 13800 MT_COB intronic no 7308 1186 1208 27.697087 300.260877 163.978982 2.214788186 -0.170818 24 23 5725 snR34 snR34/3_flank no 750 27.896886 272.73239 150.314638 2.177001275 -0.034243 24 24 7893 snoRNA cluster1 intergenic no 1574 1261 1273 56.937582 292.227595 174.5825885 2.242000928 0.229651 24 25 5068 snR11 5_flank no 458 30.436956 297.85497 164.145963 2.215230206 -0.033216 24 26 7435 snR69 snR69 yes 301 76 94 30.633419 301.703358 166.1683885 2.220548408 -0.050134 24 27 17856 YKR095W intron no 175 101 120 30.755447 299.948088 165.3517675 2.218408842 -0.035239 24 28 1601 Leu4 LeuCAA_iv 3_flank no 314 30.822028 315.975724 173.398876 2.239046278 -0.128825 24 29 17269 YHR123W intron no 191 81 97 54.019569 319.796627 186.908098 2.271628118 -0.019333 24 30 10339 RUF7 RUF7 yes 700 306 323 30.95444 296.935791 163.9451155 2.214698482 -0.009921 24 31 7779 snoRNA cluster1 intergenic no 1574 691 708 39.516774 322.599902 181.058338 2.25781853 -0.110157 24 32 1120 Gly4 GlyTCC 3_flank no 272 31.203593 317.569064 174.3863285 2.241512434 -0.127248 24 33 5328 snR30 snR30 yes 801 491 507 33.44215 297.085337 165.2637435 2.218177586 0.066218 24 34 21846 copy of SH17381 no 572 77.563452 329.660567 203.6120095 2.30880339 0.047538 24 35 8468 snoRNA cluster 5 3_flank no 586 506 525 33.515817 296.467616 164.9917165 2.217462141 0.072273 24 36 11699 "rRNA(18S,5.8S,25S)" 25S yes 7956 5381 5394 35333.21604 17200.95731 26267.08667 4.419411907 0.240928 24 37 8879 LSR1 / U2 RNA U2 yes 1375 1036 1048 158.963069 370.700607 264.831838 2.422970195 0.262347 24 38 14618 MT_21S Sce1 no 4639 3481 3502 31.261306 315.700225 173.4807655 2.23925133 -0.112442 24 39 736 Gln4 GlnTTG_iii 5_flank no 272 31.21263 315.480892 173.346761 2.238915731 -0.112789 24 40 18551 YMR230W intron no 510 401 422 31.147496 318.911579 175.0295375 2.243111345 -0.138418 24 41 18273 YML056C intron no 508 341 360 31.057356 297.892569 164.4749625 2.216099796 -0.012378 24 42 1856 Leu9 LeuTAG_ii tRNA yes 301 20:B 36 33.049656 311.532555 172.2911055 2.236262858 -0.05602 24 43 10962 "rRNA(18S,5.8S,25S)" 18S yes 7956 1696 1714 440.038461 999.299434 719.6689475 2.857132764 -0.528357 24 44 14781 MT_ORF11; Leu; Gln tRNA/3_flank no 716 601 620 32.851808 314.683284 173.767546 2.239968668 -0.083375 24 45 5245 snR30 snR30 yes 801 76 92 34.904134 275.781611 155.3428725 2.191291332 0.251553 24 46 13633 MT_ATP6 ATP6 yes 980 301 320 28.660894 311.58545 170.123172 2.230763472 -0.178975 24 47 21549 copy of SH4562 no 662 30.801857 290.407914 160.6048855 2.205758752 0.025847 24 48 5310 snR30 snR30 yes 801 401 415 45.603789 289.026295 167.315042 2.223534987 0.211686 24 49 7488 snR71 snR71 yes 290 56 74 33.06784 286.607824 159.837832 2.20367958 0.124224 24 50 13925 MT_COB bi3 no 7308 3061 3080 31.030459 303.502361 167.26641 2.223408736 -0.047633 24 51 10573 RUF8 RUF8 yes 1151 791 805 39.510776 274.337957 156.9243665 2.195690384 0.332128 24 52 7042 snR62 snR62 yes 300 1 23 35.248221 359.882593 197.565407 2.295710903 -0.426422 24 53 11928 "rRNA(18S,5.8S,25S)" 25S yes 7956 6526 6541 11340.18122 4066.566046 7703.373633 3.886680963 1.252853 24 54 6621 snR48 5_flank no 313 32.869613 298.769742 165.8196775 2.219636066 0.041429 24 55 833 Glu2 GluTTC_i 5_flank no 272 30.571403 325.680563 178.125983 2.250727274 -0.198054 24 56 16197 YDR381C intron no 294 121 137 32.406687 262.783404 147.5950455 2.169071779 0.250716 24 57 14267 MT_VAR1 VAR1 yes 1467 211 237 28.070758 308.952901 168.5118295 2.226630394 -0.187996 24 58 1982 Lys2 LysCTT_ii 3_flank no 273 42.139182 260.848534 151.493858 2.180395026 0.483402 24 59 12183 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7801 7817 54.077618 272.765857 163.4217375 2.213309824 0.397675 24 60 12824 MT_COX1 ai1 no 13084 1561 1580 29.518726 335.46064 182.489683 2.261238317 -0.285684 24 61 5925 snR36 snR36 yes 555 81 102 35.290499 377.791387 206.540943 2.315006156 -0.559462 24 62 11295 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3361 3379 31.049184 286.950728 158.999956 2.201397004 0.056248 24 63 642 Gln2 GlnTTG_i 5_flank/tRNA no 272 52.419229 315.938075 184.178652 2.26523929 0.003167 24 64 5288 snR30 snR30 yes 801 291 303 83.139105 313.77505 198.4570775 2.297666592 0.199786 24 65 13876 MT_COB intronic no 7308 2326 2350 30.274735 329.64843 179.9615825 2.255179803 -0.232019 24 66 9803 RUF4 3_flank no 988 30.139096 309.736799 169.9379475 2.230290369 -0.115505 24 67 4944 snR9 snR9 yes 387 126 140 65.826363 331.8976 198.8619815 2.298551762 -0.043425 24 68 19921 YAL030W spliced yes 40 13 30 28.304521 302.010636 165.1575785 2.217898507 -0.144847 24 69 1698 Leu6 LeuGAG tRNA yes 282 56 68 57.673348 275.074885 166.3741165 2.221085762 0.391233 24 70 13846 MT_COB bi2 no 7308 1876 1897 26.774687 323.450415 175.112551 2.243317275 -0.322509 24 71 20939 YLR406C spliced yes 40 21 37 38.783058 284.971816 161.877437 2.20918632 0.230447 24 72 16961 YGR034W 5_exon no 454 1 20 34.034715 304.743831 169.389273 2.228885904 0.01059 24 73 6823 snR52 snR52 yes 292 21 36 55.009954 305.792416 180.401185 2.256239386 0.101975 24 74 461 Asp1 AspGTC_i 3_flank no 271 33.0405 281.496739 157.2686195 2.196642075 0.15649 24 75 13667 MT_ATP6 ATP6 yes 980 811 828 30.922952 312.890116 171.906534 2.235292384 -0.107344 24 76 740 Gln4 GlnTTG_iii 5_flank no 272 28.801575 323.569359 176.185467 2.245970082 -0.243347 24 77 17083 YHL001W exon/intron no 498 41 58 34.527234 322.738757 178.6329955 2.251961681 -0.125245 24 78 11695 "rRNA(18S,5.8S,25S)" 25S yes 7956 5361 5378 10748.20319 13200.57572 11974.38946 4.078253379 -0.774401 24 79 9848 RUF5-1 RUF5-1 yes 975 46 65 34.48686 326.139236 180.313048 2.256027155 -0.153398 24 80 14192 MT_COB exon6 yes 7308 7066 7080 34.582474 271.828063 153.2052685 2.1852737 0.268471 24 81 2846 Pro7 ProTGG_vi tRNA/intron no 303 37 i12 52.436705 284.577144 168.5069245 2.226617752 0.278205 24 82 12480 5S rRNA 5S/NTS1 no 1420 1356 1373 36.758279 307.68597 172.2221245 2.236088942 0.015166 24 83 6675 snR49 5_flank no 365 34.810023 314.19264 174.5013315 2.241798745 -0.055545 24 84 13968 MT_COB bi3 no 7308 3706 3728 30.816682 303.408858 167.11277 2.223009638 -0.054284 24 85 20459 YGL178W spliced yes 40 17 34 34.580039 302.070472 168.3252555 2.226149282 0.038947 24 86 12197 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7871 7889 32.391012 316.376579 174.3837955 2.241506126 -0.102486 24 87 7261 snR65 snR65 yes 300 81 100 32.080877 321.960356 177.0206165 2.248023849 -0.149706 24 88 13432 MT_COX1 intronic no 13084 10681 10702 33.605029 336.440114 185.0225715 2.267224713 -0.242648 24 89 11254 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3156 3169 38.790966 244.486253 141.6386095 2.151181655 0.583573 24 90 16179 YDR305C intron/exon no 189 141 159 30.847938 291.41632 161.132129 2.207182145 0.021026 24 91 15084 MT_COX 2; ORF1 ORF1exon1 yes 2427 1861 1882 28.619273 300.689738 164.6545055 2.216573619 -0.121828 24 92 13074 MT_COX1 ai3 no 13084 5311 5333 28.308741 338.354455 183.331598 2.263237324 -0.343634 24 93 20506 YGR027C spliced yes 40 9 30 31.68461 296.272257 163.9784335 2.214786733 0.018543 24 94 5803 snR35 snR35 yes 740 201 219 38.751798 318.379583 178.5656905 2.251798017 -0.075471 24 95 12532 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 376 400 31.63803 318.538119 175.0880745 2.243256567 -0.129052 24 96 15902 YDL083C intron no 532 121 140 48.014201 325.049589 186.531895 2.270753102 -0.094457 24 97 17835 YKR094C intron no 468 141 158 33.808887 292.360017 163.084452 2.212412559 0.110358 24 98 5505 snR32 snR32/3_flank no 388 34.067072 282.115179 158.0911255 2.198907491 0.1844 24 99 15111 MT_COX 2; ORF1 ORF3exon3 yes 2427 2266 2288 28.816909 314.416536 171.6167225 2.234559604 -0.189959 24 100 14093 MT_COB bi4 no 7308 5581 5601 29.012138 331.927452 180.469795 2.256404525 -0.282696 24 101 6766 snR50 snR50 yes 290 6 22 10320.97013 7465.162532 8893.06633 3.949051532 0.125536 24 102 21702 copy of SH10877 no 7956 33890.20171 11237.67065 22563.93618 4.353414863 0.896951 24 103 8278 snoRNA cluster4 snR67/intergenic no 638 176 197 29.364305 288.92656 159.1454325 2.201794179 -0.028757 24 104 14152 MT_COB intronic no 7308 6466 6483 31.28052 306.57105 168.925785 2.227695946 -0.057774 25 2 1561 Leu4 LeuCAA_iv 5_flank no 314 32.051806 295.712795 163.8823005 2.214532052 0.034055 25 3 10186 RUF6 RUF6 yes 1251 776 795 31.799639 286.861763 159.330701 2.202299467 0.081757 25 4 11785 "rRNA(18S,5.8S,25S)" 25S yes 7956 5811 5824 39127.52462 28004.51736 33566.02099 4.525899862 -0.442992 25 5 21648 copy of SH8563 no 868 33.295752 306.515331 169.9055415 2.230207544 -0.012824 25 6 10309 RUF7 RUF7 yes 700 156 168 32.935363 295.000303 163.967833 2.214758657 0.066893 25 7 16922 YGL251C intron/exon no 252 201 219 32.600048 304.252729 168.4263885 2.226410136 -0.003257 25 8 6650 snR48 snR48 yes 313 76 93 33.347123 307.848839 170.597981 2.231973887 -0.022914 25 9 9896 RUF5-1 RUF5-1 yes 975 286 301 48.508811 300.359988 174.4343995 2.241632134 0.116593 25 10 511 Asp2 AspGTC_ii 3_flank no 272 56.504653 329.27723 192.8909415 2.285311833 -0.080896 25 11 4103 SRP SRP yes 875 406 422 40.026119 302.800841 171.41348 2.234044972 0.06766 25 12 18673 YNL112W intron no 1102 641 660 31.84765 292.617622 162.232636 2.210138225 0.046756 25 13 4820 snR5 3_flank no 404 40.920832 315.952493 178.4366625 2.251484092 -0.048074 25 14 12017 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6971 6992 31.736467 330.077545 180.907006 2.257455386 -0.21571 25 15 4315 telomerase RNA telomerase yes 1501 611 627 35.679025 299.953159 167.816092 2.224833603 0.069285 25 16 8164 snoRNA cluster 3; snR70 yes 743 331 350 55.740564 356.975317 206.3579405 2.314621185 -0.289973 25 17 19990 YBL092W spliced yes 40 17 33 51.494732 320.922854 186.208793 2.270000185 -0.042638 25 18 5928 snR36 snR36 yes 555 96 112 41.283491 316.399599 178.841545 2.252468413 -0.050696 25 19 7171 snR64 5_flank no 301 51.156452 292.163118 171.659785 2.234668564 0.202686 25 20 1818 Leu8 LeuTAG_i 3_flank no 301 31.191691 283.085685 157.138688 2.196283123 0.085998 25 21 252 Arg3 ArgCCG 3_flank no 272 43.212745 294.443689 168.828217 2.227445034 0.153078 25 22 8156 snoRNA cluster 3; intergenic/snR70 no 743 291 310 27.440809 280.251499 153.846154 2.187086644 -0.093756 25 23 1475 Leu2 LeuCAA_ii 3_flank no 314 27.676151 327.783669 177.72991 2.249760521 -0.308794 25 24 13449 MT_COX1 intronic no 13084 10936 10957 29.986396 343.354075 186.6702355 2.271075075 -0.336652 25 25 16048 YDL191W intron no 591 421 439 36.438152 287.035119 161.7366355 2.208808405 0.186795 25 26 10628 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 26 46 28.428035 311.806004 170.1170195 2.230747765 -0.188796 25 27 1220 Ile1 IleAAT tRNA yes 274 60 72 32.707773 286.079576 159.3936745 2.202471083 0.116188 25 28 749 Gln4 GlnTTG_iii tRNA yes 272 16 32 32.784319 299.378937 166.081628 2.220321593 0.034966 25 29 1920 Lys1 LysCTT_i tRNA yes 272 56 68 49.597696 299.113379 174.3555375 2.241435745 0.133024 25 30 10068 RUF6 RUF6 yes 1251 186 202 58.156296 304.698097 181.4271965 2.25870239 0.12776 25 31 11642 "rRNA(18S,5.8S,25S)" 25S yes 7956 5096 5109 1535.776475 3122.97304 2329.374758 3.367239365 -0.782591 25 32 20248 YDR381C-A spliced yes 40 5 24 31.061029 302.55143 166.8062295 2.222212266 -0.040827 25 33 12992 MT_COX1 ai2 no 13084 4081 4102 29.057881 307.799749 168.428815 2.226416393 -0.142103 25 34 19624 RNA14 1.1 RNA14 1.1 yes 401 381 399 29.119392 282.72505 155.922221 2.192908012 -0.012877 25 35 12318 5S rRNA NTS2 no 1420 546 562 37.629178 290.939444 164.284311 2.215596091 0.166723 25 36 14938 MT_Asn 3_flank no 271 196 222 37.616483 323.728989 180.672736 2.256892621 -0.124742 25 37 15498 YBL092W intron no 433 341 362 31.22715 305.308489 168.2678195 2.226001067 -0.051959 25 38 18101 YLR367W intron no 583 241 258 31.21292 300.037509 165.6252145 2.219126454 -0.02037 25 39 6440 snR45 snR45 yes 372 46 65 31.196418 295.790627 163.4935225 2.213500551 0.005324 25 40 16691 YGL030W 3_exon no 330 281 295 37.517863 312.67474 175.0963015 2.243276973 -0.027906 25 41 2518 Pro1 ProAGG 3_flank no 272 43.808897 297.418838 170.6138675 2.232014328 0.127453 25 42 17814 YKR057W intron no 422 141 158 33.13503 308.550762 170.842896 2.232596925 -0.031184 25 43 6410 snR43 3_flank no 409 30.951589 285.793865 158.372727 2.199680395 0.060398 25 44 14429 MT_21S 21S_rRNA3 yes 4639 646 674 28.800947 318.298335 173.549641 2.23942372 -0.21313 25 45 16977 YGR034W intron no 454 321 340 32.971514 305.127993 169.0497535 2.228014542 -0.005664 25 46 11455 "rRNA(18S,5.8S,25S)" 25S yes 7956 4161 4174 152.771569 335.108326 243.9399475 2.387282926 0.443066 25 47 7926 snoRNA cluster1 snR72 yes 1574 1426 1443 37.254541 296.619826 166.9371835 2.222553082 0.114794 25 48 16102 YDR059C 3_exon no 190 141 155 77.720139 321.886476 199.8033075 2.300602673 0.105767 25 49 16744 YGL076C intron no 559 301 317 37.433747 279.734542 158.5841445 2.200259764 0.261626 25 50 5763 snR35 snR35 yes 740 1 18 31.155775 293.653277 162.404526 2.210598128 0.017316 25 51 10194 RUF6 RUF6 yes 1251 816 834 31.186343 325.819124 178.5027335 2.251644871 -0.190859 25 52 5312 snR30 snR30 yes 801 411 427 33.281661 310.979453 172.130557 2.235857974 -0.048732 25 53 10866 "rRNA(18S,5.8S,25S)" 18S yes 7956 1216 1231 96.562054 341.529778 219.045916 2.34053516 0.085487 25 54 9176 snR7 U5 RNA U5 yes 415 151 165 76.444853 292.949815 184.697334 2.266460627 0.32711 25 55 13683 MT_ORF 5 5_flank/ORF5 no 331 91 115 28.606715 329.244554 178.9256345 2.252672566 -0.282449 25 56 19931 YBL026W spliced yes 40 1 15 32.506295 321.434685 176.97049 2.247900853 -0.140213 25 57 6861 snR56 5_flank no 288 32.225945 270.351166 151.2885555 2.179806076 0.204219 25 58 5965 snR36 snR36 yes 555 281 300 29.923958 270.139903 150.0319305 2.176183697 0.090106 25 59 9833 RUF5-1 5_flank no 975 103.265044 312.708111 207.9865775 2.318035308 0.327348 25 60 10448 RUF8 RUF8 yes 1151 166 184 29.468934 279.465138 154.467036 2.188835813 0.021106 25 61 7361 snR68 snR68 yes 336 26 42 37.203298 302.456076 169.829687 2.230013609 0.064166 25 62 7626 snR189 3_flank no 389 30.978256 332.160827 181.5695415 2.259042997 -0.241271 25 63 8974 snR17a / U3a U3a yes 690 156 173 40.520427 312.518111 176.519269 2.24679212 -0.019476 25 64 12244 5S rRNA NTS2 no 1420 176 195 32.427365 290.690671 161.559018 2.208331205 0.077757 25 65 3922 RNase MRP RNaseMRP yes 540 26 44 30.310102 312.604743 171.4574225 2.234156291 -0.126566 25 66 6973 snR60 5_flank no 304 30.227441 288.608488 159.4179645 2.20253726 0.017633 25 67 13296 MT_COX1 ai5a no 13084 8641 8666 28.336545 360.2078 194.2721725 2.288410597 -0.478508 25 68 15474 YBL091C exon/intron no 188 41 57 36.213296 314.711516 175.462406 2.24418408 -0.049279 25 69 19544 CBP1 1.2 CBP1 1.2 yes 401 381 397 30.634061 251.197208 140.9156345 2.14895918 0.223166 25 70 10380 RUF7 3_flank no 700 32.867341 282.41481 157.6410755 2.197669389 0.145008 25 71 12809 MT_COX1 ai1 no 13084 1336 1359 27.190634 327.183587 177.1871105 2.248432126 -0.323902 25 72 3530 Tyr2 TyrGTA_ii 5_flank no 289 31.317482 313.942474 172.629978 2.237116215 -0.100287 25 73 12282 5S rRNA NTS2 no 1420 366 382 45.389922 278.794455 162.0921885 2.209762086 0.309935 25 74 232 Arg3 ArgCCG tRNA yes 272 16 32 31.308511 287.344165 159.326338 2.202287574 0.062411 25 75 21647 copy of SH8562 no 868 35.123321 285.645461 160.384391 2.205162099 0.183571 25 76 12670 MT_15S 3_flank no 1848 1801 1813 46.79341 271.578719 159.1860645 2.201905046 0.386146 25 77 10649 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 131 144 5840.262756 7212.585702 6526.424229 3.8146753 -0.510859 25 78 8318 snoRNA cluster4 intergenic no 638 376 396 34.640895 314.397369 174.519132 2.241843044 -0.059171 25 79 7049 snR62 snR62 yes 300 36 57 34.649978 339.098599 186.8742885 2.271549552 -0.261843 25 80 13535 MT_COX1 intronic no 13084 12226 12244 28.854878 289.915536 159.385207 2.202448011 -0.060499 25 81 1352 Ile3 IleTAT_ii 3_flank no 333 32.897538 278.85544 155.876489 2.192780615 0.169319 25 82 14090 MT_COB bi4 no 7308 5536 5555 31.021792 322.273379 176.6475855 2.247107706 -0.166008 25 83 16092 YDR025W intron/exon no 439 381 398 94.352323 321.063471 207.707897 2.317453009 0.213236 25 84 21773 copy of SH13813 no 7308 31.004453 317.947904 174.4761785 2.24173614 -0.134119 25 85 18841 YNL312W 5_exon no 208 1 17 30.864727 286.811059 158.837893 2.200954117 0.050922 25 86 20836 YKR095W-A spliced yes 40 17 35 36.495347 324.198536 180.3469415 2.256108782 -0.131554 25 87 9857 RUF5-1 RUF5-1 yes 975 91 108 43.892033 298.61373 171.2528815 2.233637888 0.116725 25 88 17105 YHL001W 3_exon no 498 481 496 82.664179 304.88502 193.7745995 2.287296848 0.265945 25 89 3018 Ser2 SerAGA_ii tRNA yes 282 e3 54 37.099812 261.427355 149.2635835 2.173953864 0.413673 25 90 7269 snR65 3_flank no 300 30.066087 280.475568 155.2708275 2.191089868 0.047471 25 91 12100 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7386 7403 65.612784 344.661264 205.137024 2.312044051 -0.137849 25 92 3495 Tyr1 TyrGTA_i tRNA yes 289 16 30 353.933851 473.356043 413.644947 2.616627723 0.5256 25 93 17015 YGR148C intron no 479 221 237 48.02347 306.196982 177.110226 2.248243637 0.063315 25 94 8418 snoRNA cluster 5 snR190 yes 586 256 273 48.732953 289.899209 169.316081 2.228698208 0.212865 25 95 19065 YOR293W intron no 537 61 78 31.649673 334.406027 183.02785 2.262517178 -0.249041 25 96 2645 Pro3 ProTGG_ii 3_flank no 303 31.723585 267.630778 149.6771815 2.175155597 0.193274 25 97 20544 YGR214W spliced yes 40 13 29 37.26017 267.760461 152.5103155 2.18329922 0.367818 25 98 1542 Leu3 LeuCAA_iii 3_flank no 314 28.391425 279.668007 154.029716 2.187604515 -0.037737 25 99 5194 snR13 3_flank no 324 35.812357 261.831786 148.8220715 2.172667345 0.373946 25 100 17782 YKL180W intron no 406 301 318 28.673532 308.82809 168.750811 2.227245869 -0.162148 25 101 5585 snR33 3_flank no 383 32.473637 267.639809 150.056723 2.176255458 0.229538 25 102 20797 YKL157W spliced yes 40 5 24 36.301736 311.647169 173.9744525 2.240485478 -0.021717 25 103 2589 Pro2 ProTGG_i 3_flank no 303 28.968944 257.062497 143.0157205 2.155383778 0.098506 25 104 19141 YPL075W intron no 851 341 357 47.841901 315.550855 181.696378 2.25934627 -0.017049 26 2 19552 CBP1 2.2 CBP1 2.2 yes 401 141 162 32.215877 311.690865 171.953371 2.235410694 -0.067856 26 3 12568 MT_15S 15S yes 1848 271 299 29.749258 315.593862 172.67156 2.237220813 -0.163591 26 4 564 Cys1 CysGCA 3_flank no 272 51.081937 318.440453 184.761195 2.266610763 -0.024925 26 5 16280 YDR447C intron no 414 281 298 33.346747 271.840134 152.5934405 2.183535865 0.230393 26 6 14832 MT_Asp 5_flank no 275 1 29 28.748817 307.61119 168.1800035 2.225774357 -0.152141 26 7 2092 Lys4 LysTTT_ii 3_flank no 296 34.632822 306.747248 170.690035 2.232208167 0.00161 26 8 8598 snR19 / U1 RNA U1 yes 868 486 498 74.634406 337.657772 206.146089 2.3141751 -0.02869 26 9 5030 snR10 snR10 yes 445 181 197 35.063755 304.925974 169.9948645 2.230435802 0.021447 26 10 19977 YBL087C spliced yes 40 17 33 44.044495 293.918116 168.9813055 2.227838661 0.160694 26 11 5408 snR31 snR31 yes 425 106 127 27.730577 310.786464 169.2585205 2.22855054 -0.21482 26 12 19803 Negative Control no 60 NA #VALUE! 39.785521 269.388925 154.587223 2.189173596 0.379987 26 13 1397 Leu1 LeuCAA_i tRNA-intron no 315 i18 38 95.109199 364.097117 229.603158 2.360977857 -0.069469 26 14 20185 YDL191W spliced yes 40 17 33 41.613798 303.708372 172.661085 2.237194466 0.06285 26 15 11187 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2821 2839 29.43901 276.794447 153.1167285 2.185022641 0.032314 26 16 8790 LSR1 / U2 RNA U2 yes 1375 591 607 164.653482 428.657082 296.655282 2.472252085 -0.006554 26 17 19271 YPL143W intron no 625 301 322 27.190744 301.242694 164.216719 2.215417371 -0.203833 26 18 13370 MT_COX1 intronic no 13084 9751 9777 27.076048 297.825489 162.4507685 2.21072177 -0.195209 26 19 4808 snR5 3_flank no 404 28.964114 280.523636 154.743875 2.189613468 -0.010776 26 20 1942 Lys2 LysCTT_ii 5_flank no 273 26.992663 326.330923 176.661793 2.247142634 -0.326728 26 21 6367 snR43 snR43 yes 409 76 92 31.0148 293.412215 162.2135075 2.210087015 0.014092 26 22 1247 Ile2 IleTAT_i 5_flank no 333 55.16645 337.682048 196.424249 2.293195101 -0.153181 26 23 2569 Pro2 ProTGG_i tRNA yes 303 51 65 39.561777 288.487662 164.0247195 2.214909304 0.201893 26 24 8549 snR19 / U1 RNA U1 yes 868 241 253 46.11223 275.203579 160.6579045 2.205902098 0.347688 26 25 18390 YMR116C intron no 373 301 322 30.168991 330.922395 180.545693 2.256587133 -0.243 26 26 4126 SRP SRP yes 875 521 533 123.969154 385.585735 254.7774445 2.406160977 -0.013418 26 27 8481 snR19 / U1 RNA 5_flank no 868 32.626164 278.110258 155.368211 2.191362165 0.165596 26 28 20149 YDL115C spliced yes 40 17 34 47.298193 347.348608 197.3234005 2.295178591 -0.272698 26 29 7445 snR69 3_flank no 301 30.671795 289.580323 160.126059 2.204462015 0.026683 26 30 9218 snR6 / U6 RNA 5_flank no 312 30.73211 290.111511 160.4218105 2.205263413 0.02536 26 31 16741 YGL076C intron no 559 241 260 30.824119 315.140766 172.9824425 2.238002025 -0.123883 26 32 4500 U3b (snR17b) U3b yes 662 56 73 35.133643 297.680725 166.407184 2.221172071 0.081701 26 33 3451 Trp1 TrpCCA tRNA yes 306 35.244306 293.135046 164.189676 2.215345846 0.121032 26 34 7628 snR189 3_flank no 389 31.091394 289.765374 160.428384 2.205281209 0.039695 26 35 17792 YKL186C intron no 249 101 120 31.115581 295.795021 163.455301 2.21339901 0.002588 26 36 11378 "rRNA(18S,5.8S,25S)" 25S yes 7956 3776 3789 26636.50827 15855.19775 21245.85301 4.327274172 0.030255 26 37 21816 copy of SH15701 no 521 33.238417 290.266983 161.7527 2.208851539 0.106239 26 38 12778 MT_COX1 ai1 no 13084 871 893 31.136967 297.413458 164.2752125 2.215572038 -0.006741 26 39 12027 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 7021 7041 29.034112 307.334048 168.18408 2.225784884 -0.14017 26 40 5979 snR36 snR36/3_flank no 555 31.137388 280.719331 155.9283595 2.19292511 0.099633 26 41 7735 snoRNA cluster1 intergenic no 1574 471 492 28.992237 297.818472 163.4053545 2.213266283 -0.088933 26 42 17357 YIL052C exon/intron no 572 41 59 31.043603 309.196767 170.120185 2.230755846 -0.081415 26 43 19880 Negative Control no 60 NA #VALUE! 64.856144 289.390162 177.123153 2.248275335 0.294791 26 44 17315 YHR203C intron no 369 281 300 30.933552 281.455715 156.1946335 2.193666108 0.08702 26 45 13475 MT_COX1 intronic no 13084 11326 11347 28.81672 293.993924 161.405322 2.207917851 -0.081157 26 46 10252 RUF6 3_flank no 1251 29.874649 317.034545 173.454597 2.239185814 -0.167584 26 47 1304 Ile3 IleTAT_ii 5_flank no 333 30.962913 331.95757 181.4602415 2.258781485 -0.239963 26 48 11091 "rRNA(18S,5.8S,25S)" 18S yes 7956 2341 2354 869.672344 643.249427 756.4608855 2.878786477 1.030446 26 49 19997 YBR048W spliced yes 40 17 33 103.895764 325.101218 214.498491 2.331424241 0.241959 26 50 21574 copy of SH5620 no 750 46.029387 270.799155 158.414271 2.199794303 0.392513 26 51 13020 MT_COX1 ai2 no 13084 4501 4522 29.087683 321.215558 175.1516205 2.24341416 -0.219583 26 52 5075 snR11 5_flank no 458 33.315528 336.40792 184.861724 2.266846999 -0.24317 26 53 10052 RUF6 RUF6 yes 1251 106 123 33.231505 290.013761 161.622633 2.208502178 0.107628 26 54 12997 MT_COX1 ai2 no 13084 4156 4173 45.745809 303.66238 174.7040945 2.242303084 0.076629 26 55 6037 snR37 snR37 yes 586 101 115 113.014759 343.490292 228.2525255 2.358415591 0.172416 26 56 11835 "rRNA(18S,5.8S,25S)" 25S yes 7956 6061 6074 584.779075 529.690589 557.234832 2.746038256 0.892055 26 57 19015 YOR182C intron no 511 181 202 30.199555 343.553254 186.8764045 2.27155447 -0.335152 26 58 868 Glu2 GluTTC_i 3_flank no 272 34.001006 252.463588 143.232297 2.156040957 0.378685 26 59 21814 copy of SH15699 no 521 56.046198 256.581241 156.3137195 2.193997097 0.567928 26 60 2813 Pro6 ProTGG_v 3_flank no 302 31.428698 254.904572 143.166635 2.155841817 0.243639 26 61 5130 snR11 snR11/3_flank no 458 31.170186 303.956076 167.563131 2.224178467 -0.045691 26 62 16446 YER074W intron no 566 481 502 30.913024 322.757593 176.8353085 2.247568984 -0.171173 26 63 8937 snR17a / U3a 5_flank no 690 34.57638 284.904884 159.740632 2.203415398 0.181778 26 64 11151 "rRNA(18S,5.8S,25S)" 18S yes 7956 2641 2659 40167.89348 9621.947722 24894.9206 4.396110746 1.362844 26 65 1018 Gly2 GlyCCC_ii 3_flank no 272 41.947645 299.175899 170.561772 2.231881699 0.105592 26 66 16968 YGR034W intron no 454 141 156 55.510921 331.203786 193.3573535 2.286360693 -0.10198 26 67 1065 Gly3 GlyGCC tRNA3_flank no 271 64 75 32.329228 329.945451 181.1373395 2.258007985 -0.207058 26 68 21605 copy of SH6881 no 288 30.589405 331.140202 180.8648035 2.257354061 -0.238896 26 69 19846 Negative Control no 60 NA #VALUE! 38.724855 292.626445 165.67565 2.219258683 0.16014 26 70 10280 RUF7 RUF7 yes 700 11 30 33.141222 300.084115 166.6126685 2.22170802 0.037655 26 71 6062 snR37 snR37 yes 586 226 245 29.431649 298.872994 164.1523215 2.215247029 -0.07457 26 72 112 Arg1 ArgACG_i 5_flank no 273 45.739481 280.451958 163.0957195 2.212442563 0.294714 26 73 4824 snR8 5_flank no 390 37.738666 313.603602 175.671134 2.244700405 -0.035658 26 74 12467 5S rRNA 5S yes 1420 1291 1307 485.186932 503.500228 494.34358 2.694028898 0.765886 26 75 14675 MT_21S 21S_rRNA4 yes 4639 4336 4358 29.463919 312.104085 170.784002 2.232447186 -0.153182 26 76 4369 telomerase RNA telomerase yes 1501 881 898 35.245836 309.188613 172.2172245 2.236076586 -0.010717 26 77 2475 Phe5 PheGAA_v 3_flank no 291 35.044039 298.787748 166.9158935 2.222497692 0.07147 26 78 15699 YBR220C intron no 521 141 157 54.76954 291.376562 173.073051 2.23822945 0.226564 26 79 13599 MT_ATP8/AAP1 MT_AAP1 yes 347 121 143 28.996128 312.00664 170.501384 2.231727909 -0.169319 26 80 917 Glu3 GluTTC_ii 3_flank no 272 33.010255 308.270204 170.6402295 2.232081427 -0.030498 26 81 4806 snR5 snR5/3_flank no 404 33.120157 295.357615 164.238886 2.215475991 0.070507 26 82 10837 "rRNA(18S,5.8S,25S)" 18S yes 7956 1071 1087 113.43526 324.291746 218.863503 2.340173346 0.303534 26 83 10105 RUF6 RUF6 yes 1251 371 388 33.234573 285.849674 159.5421235 2.202875368 0.134352 26 84 9483 RUF2 RUF2/3_flank no 468 45.114482 304.224229 174.6693555 2.242216718 0.069579 26 85 14054 MT_COB bi4 no 7308 4996 5018 31.027827 335.23389 183.1308585 2.262761531 -0.263368 26 86 8201 snoRNA cluster 3; intergenic no 743 516 533 42.57225 338.695883 190.6340665 2.280200512 -0.232562 26 87 21561 copy of SH4991 no 445 30.474998 293.702838 162.088918 2.209753323 -0.006065 26 88 6272 snR42 snR42 yes 551 141 157 32.016293 279.326742 155.6715175 2.192209159 0.137856 26 89 8088 snoRNA cluster 2 3_flank no 739 676 692 31.575863 297.635224 164.6055435 2.216444457 0.006503 26 90 2003 Lys3 LysTTT_i 5_flank no 296 31.126299 315.6801 173.4031995 2.239057106 -0.116844 26 91 7069 snR62 3_flank no 300 28.87171 262.752525 145.8121175 2.163793617 0.068132 26 92 8301 snoRNA cluster4 intergenic no 638 291 308 32.184421 259.032802 145.6086115 2.163187061 0.259165 26 93 5845 snR35 snR35 yes 740 411 430 30.120815 304.177826 167.1493205 2.223104615 -0.082794 26 94 21101 YNL050C spliced yes 40 5 24 29.980385 325.900513 177.940449 2.250274682 -0.214677 26 95 9785 RUF4 RUF4 yes 988 701 722 29.033407 309.670574 169.3519905 2.228790306 -0.15414 26 96 13407 MT_COX1 intronic no 13084 10306 10325 29.940154 286.17271 158.056432 2.198812174 0.014172 26 97 14514 MT_21S 21S_rRNA3 yes 4639 1921 1938 38.98441 332.757784 185.871097 2.269211862 -0.197127 26 98 18995 YOR122C intron no 309 81 98 49.942099 360.005675 204.973887 2.311698537 -0.349207 26 99 2953 Ser1 SerAGA_i 5_flank/tRNA no 283 72.003146 309.068323 190.5357345 2.279976438 0.169924 26 100 9614 RUF3 3_flank no 631 28.401331 340.511767 184.456549 2.265894079 -0.351926 26 101 3452 Trp1 TrpCCA tRNA/3_flank no 306 48.556876 290.530614 169.543745 2.229281772 0.206382 26 102 21047 YMR142C spliced yes 40 13 29 45.032923 289.416215 167.224569 2.223300085 0.206194 26 103 11411 "rRNA(18S,5.8S,25S)" 25S yes 7956 3941 3957 39.624695 264.285217 151.954956 2.181714869 0.42558 26 104 14625 MT_21S Sce1 no 4639 3586 3607 28.605938 330.915104 179.760521 2.254694318 -0.291796 27 2 17352 YIL018W intron/exon no 500 441 460 34.565245 319.040502 176.8028735 2.247489319 -0.096307 27 3 9679 RUF4 RUF4 yes 988 171 190 32.041557 328.874569 180.458063 2.256376291 -0.202725 27 4 12535 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 421 442 31.687559 281.651752 156.6696555 2.194984888 0.111817 27 5 2833 Pro7 ProTGG_vi 5_flank no 303 29.169248 303.376484 166.272866 2.220821383 -0.111458 27 6 15761 YCR031C intron no 407 301 318 32.995584 309.815517 171.4055505 2.234024881 -0.043039 27 7 897 Glu3 GluTTC_ii 5_flank/tRNA no 272 47.162363 315.02485 181.0936065 2.257903118 -0.016159 27 8 17610 YJL205C 3_exon no 243 221 233 69.45912 325.030778 197.244949 2.295005891 0.030654 27 9 1559 Leu4 LeuCAA_iv 5_flank no 314 29.962832 285.483437 157.7231345 2.197895399 0.018559 27 10 14417 MT_21S 21S_rRNA3 yes 4639 466 488 28.786996 336.016238 182.401617 2.261028684 -0.313373 27 11 21159 YNL301C spliced yes 40 9 23 43.831283 269.023507 156.427395 2.194312813 0.406427 27 12 17029 YGR183C 5_exon no 313 21 39 37.650168 321.695378 179.672773 2.254482271 -0.107053 27 13 2832 Pro7 ProTGG_vi 5_flank no 303 27.510978 274.178027 150.8445025 2.178529487 -0.064794 27 14 17107 YHR001W 5_exon no 163 21 40 31.393233 302.339893 166.866563 2.222369321 -0.02843 27 15 17872 YLL050C 3_exon no 279 241 257 49.203648 310.687298 179.945473 2.255140925 0.030847 27 16 7551 snR79 3_flank no 284 27.127653 299.430967 163.27931 2.212931156 -0.19941 27 17 12421 5S rRNA NTS2 no 1420 1061 1077 32.883006 278.847761 155.8653835 2.192749672 0.168909 27 18 18103 YLR367W intron no 583 281 297 32.746606 286.921104 159.833855 2.203668774 0.112019 27 19 18607 YNL069C intron no 549 301 315 34.632626 280.16253 157.397578 2.196998045 0.21438 27 20 10575 RUF8 RUF8 yes 1151 801 815 54.331776 308.934101 181.6329385 2.259194609 0.071834 27 21 940 Gly1 GlyCCC_i 5_flank no 272 26.954941 297.677483 162.316212 2.210361899 -0.201513 27 22 4898 snR8 3_flank no 390 56.996257 334.652262 195.8242595 2.291866493 -0.118746 27 23 21269 YPL081W spliced yes 40 21 33 47.524182 321.28621 184.405196 2.265773154 -0.066235 27 24 20146 YDL115C spliced yes 40 5 21 35.892855 297.105698 166.4992765 2.221412351 0.095331 27 25 18903 YOL120C intron no 547 261 277 34.236347 313.516074 173.8762105 2.240240167 -0.057098 27 26 12536 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 436 450 36.581308 296.418335 166.4998215 2.221413772 0.108922 27 27 862 Glu2 GluTTC_i 3_flank no 272 30.53831 301.120462 165.829386 2.219661493 -0.04982 27 28 4935 snR9 snR9 yes 387 81 98 36.838736 331.319104 184.07892 2.265004058 -0.191403 27 29 16615 YFL039C exon/intron no 408 41 58 32.717295 300.706774 166.7120345 2.221966952 0.024681 27 30 18525 YMR225C intron no 247 121 136 61.032083 355.83176 208.4319215 2.318964232 -0.24685 27 31 8470 snoRNA cluster 5 3_flank no 586 516 532 58.015525 320.365946 189.1907355 2.276899866 -0.002107 27 32 2545 Pro2 ProTGG_i 5_flank no 303 31.885925 277.321541 154.603733 2.189219976 0.146861 27 33 5530 snR33 5_flank no 383 28.823681 317.849377 173.336529 2.238890096 -0.209707 27 34 10743 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 601 617 35.178432 297.769861 166.4741465 2.221346797 0.081488 27 35 13022 MT_COX1 ai2 no 13084 4531 4550 30.99901 305.049599 168.0243045 2.225372106 -0.058054 27 36 14494 MT_21S 21S_rRNA3 yes 4639 1621 1642 56.411683 338.858999 197.635341 2.295864607 -0.154011 27 37 15185 MT_COX3 cox3 no 1010 196 213 37.36565 297.351539 167.3585945 2.22364802 0.109938 27 38 5094 snR11 snR11 yes 458 71 87 93.410544 344.530339 218.9704415 2.340385494 0.045706 27 39 21256 YPL075W spliced yes 40 21 33 45.908508 295.350284 170.629396 2.232053853 0.153264 27 40 17923 YLR078C exon/intron no 189 41 53 866.201388 3821.250085 2343.725737 3.369906789 -1.848324 27 41 18865 YNR053C intron no 631 281 297 35.274445 293.300318 164.2873815 2.215604208 0.119993 27 42 13574 MT_COX1 exon6 yes 13084 12811 12832 28.895891 307.649786 168.2728385 2.226014021 -0.147044 27 43 1736 Leu7 LeuTAA 5_flank no 284 30.931352 303.107484 167.019418 2.222766966 -0.048576 27 44 39 Ala1 AlaAGC 3_flank no 273 60.3913 293.030404 176.710852 2.247263221 0.240024 27 45 15642 YBR186W 3_exon no 213 181 200 30.841667 333.278341 182.060004 2.260214548 -0.251401 27 46 8135 snoRNA cluster 3; snR41/intergenic no 743 186 202 37.125995 272.377785 154.75189 2.189635962 0.324072 27 47 18671 YNL112W intron no 1102 601 623 28.771765 307.021522 167.8966435 2.225042014 -0.147775 27 48 9128 snR7 U5 RNA 5_flank no 415 30.920075 325.134571 178.027323 2.250486661 -0.189212 27 49 3161 Ser5 SerTGA 5_flank no 282 45.775614 306.666999 176.2213065 2.246058417 0.049714 27 50 10532 RUF8 RUF8 yes 1151 586 607 31.070973 310.180601 170.625787 2.232044668 -0.086344 27 51 21196 YOL121C spliced yes 40 9 25 39.599108 257.879946 148.739527 2.172426396 0.485945 27 52 1268 Ile2 IleTAT_i tRNA/intron no 333 36 i15 33.248593 295.059887 164.15424 2.215252105 0.076405 27 53 18674 YNL112W intron no 1102 661 680 33.181985 296.731715 164.95685 2.217370355 0.063908 27 54 18373 YMR079W intron/exon no 256 201 219 121.965965 344.250546 233.1082555 2.367557654 0.220272 27 55 15455 YBL087C intron no 604 261 280 36.996252 321.399181 179.1977165 2.253332471 -0.106079 27 56 10959 "rRNA(18S,5.8S,25S)" 18S yes 7956 1681 1701 26248.81934 13304.28602 19776.55268 4.29615059 0.30378 27 57 2064 Lys4 LysTTT_ii 5_flank/tRNA no 296 40.488492 312.263168 176.37583 2.24643907 -0.017268 27 58 8152 snoRNA cluster 3; intergenic no 743 271 290 29.928096 315.391267 172.6596815 2.237190935 -0.15615 27 59 21049 YMR142C spliced yes 40 21 38 31.679296 268.433191 150.0562435 2.17625407 0.187117 27 60 10564 RUF8 RUF8 yes 1151 746 761 57.548073 314.545262 186.0466675 2.269621895 0.042305 27 61 16477 YER102W intron no 460 181 197 41.053512 265.001481 153.0274965 2.184769473 0.433558 27 62 2735 Pro5 ProTGG_iv intron/tRNA no 303 i20 41 81.187402 363.307563 222.2474825 2.34683685 -0.157998 27 63 15530 YBR048W 3_exon no 611 561 576 90.153976 339.300624 214.7273 2.331887263 0.059617 27 64 16062 YDL219W intron/exon no 171 121 140 32.368183 286.455092 159.4116375 2.202520023 0.102874 27 65 2159 Met2 MetCAT_ii 5_flank no 272 30.342859 321.789138 176.0659985 2.245675494 -0.178753 27 66 15221 MT_COX3 cox3 no 1010 736 755 30.369184 289.455652 159.912418 2.20388219 0.017122 27 67 11531 "rRNA(18S,5.8S,25S)" 25S yes 7956 4541 4558 2770.552901 4307.892147 3539.222524 3.548907869 -0.56452 27 68 4092 SRP SRP yes 875 351 367 28.808604 298.34845 163.578527 2.213726293 -0.101174 27 69 7394 snR68 3_flank no 336 64.919236 285.899724 175.40948 2.244053061 0.32582 27 70 12827 MT_COX1 ai1 no 13084 1606 1623 37.421106 316.74505 177.083078 2.248177062 -0.064279 27 71 10104 RUF6 RUF6 yes 1251 366 385 35.755693 312.515527 174.13561 2.240887592 -0.03122 27 72 17572 YJL189W 3_exon no 486 441 460 31.926294 312.387296 172.156795 2.235924169 -0.07711 27 73 8247 snoRNA cluster4 5_flank no 638 21 38 32.008724 285.338655 158.6736895 2.20050492 0.098403 27 74 21230 YOR234C spliced yes 40 17 34 31.958209 299.158173 165.558191 2.218950672 0.009674 27 75 13898 MT_COB intronic no 7308 2656 2684 27.761135 336.743187 182.252161 2.260672687 -0.355243 27 76 10424 RUF8 RUF8 yes 1151 46 63 37.639001 293.42331 165.5311555 2.218879747 0.145822 27 77 881 Glu3 GluTTC_ii 5_flank no 272 51.493011 303.082656 177.2878335 2.248678933 0.107434 27 78 7760 snoRNA cluster1 snR76 yes 1574 596 613 37.276033 300.843232 169.0596325 2.228039921 0.079283 27 79 19343 YPL249C 5_exon no 337 1 19 195.848021 401.853659 298.85084 2.475454481 0.275294 27 80 11839 "rRNA(18S,5.8S,25S)" 25S yes 7956 6081 6098 4903.931253 6085.534735 5494.732994 3.739946594 -0.440492 27 81 5616 snR34 snR34 yes 750 1 17 35.398133 288.883661 162.140897 2.209892571 0.15894 27 82 21416 Ser4 spliced yes 40 9 23 59.653182 284.741094 172.197138 2.236025929 0.310659 27 83 9675 RUF4 RUF4 yes 988 151 166 31.444918 301.772674 166.608796 2.221697926 -0.023255 27 84 13561 MT_COX1 exon6 yes 13084 12616 12637 29.354359 289.705712 159.5300355 2.202842462 -0.032869 27 85 15981 YDL136W intron no 505 201 215 33.144131 270.703748 151.9239395 2.181626213 0.231742 27 86 6339 snR43 5_flank no 409 30.897035 320.821411 175.859223 2.24516515 -0.156517 27 87 3832 RNaseP RNaseP yes 569 126 142 34.460371 284.65282 159.5565955 2.202914761 0.179898 27 88 9264 snR6 / U6 RNA 3_flank no 312 28.269453 292.474683 160.372068 2.205128729 -0.10405 27 89 21653 copy of SH8773 no 1375 33.572513 273.534247 153.55338 2.186259381 0.226 27 90 8711 LSR1 / U2 RNA U2 yes 1375 196 212 38.736698 279.179234 158.957966 2.201282297 0.280704 27 91 8136 snoRNA cluster 3; snR41/intergenic no 743 191 208 34.538799 286.280232 160.4095155 2.205230127 0.171137 27 92 18955 YOL127W intron no 514 281 297 80.984988 312.06272 196.523854 2.293415272 0.20014 27 93 12534 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 406 427 30.278372 294.98446 162.631416 2.211204443 -0.020841 27 94 20758 YJR094W-A spliced yes 40 13 32 1080.723159 1043.258646 1061.990903 3.026120796 0.49843 27 95 12134 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7556 7569 35.464928 299.120705 167.2928165 2.223477293 0.073661 27 96 12213 5S rRNA NTS2 no 1420 21 37 44.463547 273.206072 158.8348095 2.200945686 0.364628 27 97 3379 Thr4 ThrTGT_ii 5_flank/tRNA no 272 28.225849 293.753643 160.989746 2.206798215 -0.112259 27 98 12289 5S rRNA NTS2 no 1420 401 418 37.229122 265.550508 151.389815 2.180096658 0.387955 27 99 21454 copy of SH463 no 271 57.185433 272.698881 164.942157 2.21733167 0.412047 27 100 1340 Ile3 IleTAT_ii tRNA-intron no 333 i44 i60 35.452173 340.665413 188.058793 2.274293644 -0.272634 27 101 10632 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 46 62 34.572905 280.904163 157.738534 2.1979378 0.207711 27 102 19689 Negative Control no 60 NA #VALUE! 30.072914 284.142699 157.1078065 2.196197765 0.030526 27 103 17974 YLR211C 5_exon no 159 1 18 31.900408 276.716817 154.3086125 2.188390166 0.151354 27 104 12970 MT_COX1 ai2 no 13084 3751 3773 28.257952 356.085117 192.1715345 2.283689058 -0.45121 28 2 15865 YDL079C intron no 392 221 238 34.628734 281.519112 158.073923 2.198860232 0.205369 28 3 15510 YBR048W intron no 611 161 177 36.508259 310.27535 173.3918045 2.239028566 -0.008873 28 4 879 Glu3 GluTTC_ii 5_flank no 272 31.766708 293.39646 162.581584 2.21107135 0.039204 28 5 4751 snR5 5_flank no 404 136.319723 450.028535 293.174129 2.467125644 -0.26459 28 6 7552 snR79 3_flank no 284 33.096276 305.697093 169.3966845 2.228904906 -0.008706 28 7 1324 Ile3 IleTAT_ii tRNA yes 333 1 13 30.617001 263.461842 147.0394215 2.167433785 0.159014 28 8 977 Gly1 GlyCCC_i 3_flank no 272 28.23989 294.655236 161.447563 2.208031494 -0.115567 28 9 5395 snR31 snR31 yes 425 41 59 32.075731 278.282966 155.1793485 2.190833924 0.146686 28 10 15232 MT_COX3 cox3/3_flank no 1010 901 917 35.926609 300.609405 168.268007 2.226001551 0.066747 28 11 18826 YNL302C intron no 651 341 357 37.770522 315.883847 176.8271845 2.247549032 -0.055824 28 12 18863 YNR053C intron no 631 241 257 32.578614 280.864899 156.7217565 2.19512929 0.145927 28 13 5199 snR13 3_flank no 324 27.437805 289.944095 158.69095 2.20055216 -0.138874 28 14 20191 YDL219W spliced yes 40 17 36 27.294613 305.222381 166.258497 2.22078385 -0.215386 28 15 11073 "rRNA(18S,5.8S,25S)" 18S yes 7956 2251 2268 33.06437 259.469096 146.266733 2.165145561 0.298835 28 16 17822 YKR057W intron no 422 301 317 92.930742 348.731725 220.8312335 2.344060498 0.014881 28 17 14384 MT_ORF9; ORF10 3_flank no 578 526 551 26.838272 300.624371 163.7313215 2.214131767 -0.22137 28 18 5516 snR32 3_flank no 388 50.226412 310.090071 180.1582415 2.255654134 0.040979 28 19 12529 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 331 357 26.723975 305.621122 166.1725485 2.22055928 -0.249953 28 20 6387 snR43 snR43 yes 409 176 193 30.687618 279.299169 154.9933935 2.190313187 0.08486 28 21 15459 YBL087C intron no 604 341 358 28.909138 292.188257 160.5486975 2.205606787 -0.067978 28 22 1663 Leu5 LeuCAA_v 3_flank no 315 31.161529 282.209222 156.6853755 2.195028463 0.090697 28 23 5643 snR34 snR34 yes 750 136 153 31.52821 294.027013 162.7776115 2.211594672 0.027382 28 24 2736 Pro5 ProTGG_iv intron/tRNA no 303 i25 45 44.126105 314.584629 179.355367 2.253714377 -0.025432 28 25 4805 snR5 snR5/3_flank no 404 30.216154 287.288602 158.752378 2.200720239 0.023247 28 26 19926 YBL018C spliced yes 40 5 26 28.391069 291.46809 159.9295795 2.203928795 -0.092789 28 27 14363 MT_ORF9; ORF10 ORF9 yes 578 211 239 30.588 325.642855 178.1154275 2.250701538 -0.197543 28 28 20739 YJL191W spliced yes 40 13 27 47.316125 277.826358 162.5712415 2.211043722 0.325341 28 29 2412 Phe4 PheGAA_iv 3_flank no 291 34.814686 268.469036 151.641861 2.180819106 0.298352 28 30 8816 LSR1 / U2 RNA U2 yes 1375 721 738 30.675937 281.357434 156.0166855 2.193171047 0.074491 28 31 10154 RUF6 RUF6 yes 1251 616 637 30.722877 300.688031 165.705454 2.219336803 -0.040882 28 32 13859 MT_COB bi2 no 7308 2071 2093 28.702552 292.182769 160.4426605 2.205319855 -0.079096 28 33 21092 YNL012W spliced yes 40 17 33 39.240493 308.104715 173.672604 2.239731316 0.017333 28 34 17239 YHR079C intron no 186 61 77 35.098928 289.421444 162.260186 2.210211969 0.150829 28 35 21151 YNL265C spliced yes 40 1 17 43.565371 281.992735 162.779053 2.211598518 0.274319 28 36 21091 YNL012W spliced yes 40 13 29 54.1943 306.834465 180.5143825 2.25651181 0.088735 28 37 16897 YGL226C intron no 249 101 117 69.155432 315.981092 192.568262 2.284584711 0.098456 28 38 6828 snR52 snR52 yes 292 46 64 33.143005 307.356563 170.249784 2.23108657 -0.021501 28 39 4361 telomerase RNA telomerase yes 1501 841 853 39.504857 270.985562 155.2452095 2.191018208 0.362452 28 40 21104 YNL050C spliced yes 40 17 36 37.37764 320.646431 179.0120355 2.252882231 -0.09859 28 41 18753 YNL162W intron no 612 381 395 80.783902 317.074531 198.9292165 2.298698572 0.160711 28 42 1755 Leu7 LeuTAA tRNA yes 284 60 72 126.041044 353.466969 239.7540065 2.379765873 0.185789 28 43 20887 YLR275W spliced yes 40 9 28 28.741972 273.705404 151.223688 2.179619825 0.010027 28 44 15077 MT_COX 2; ORF1 ORF1exon1 yes 2427 1756 1780 28.667398 294.857966 161.762682 2.208878339 -0.093137 28 45 4588 U3b (snR17b) 3_flank no 662 28.615262 284.210306 156.412784 2.194272246 -0.04699 28 46 197 Arg2 ArgACG_ii 3_flank no 273 30.674048 279.08914 154.881594 2.18999981 0.085175 28 47 20583 YHR016C spliced yes 40 21 33 43.223994 292.947772 168.085883 2.22553124 0.167109 28 48 5811 snR35 snR35 yes 740 241 259 34.916192 301.679989 168.2980905 2.226079189 0.046149 28 49 16285 YDR447C 3_exon no 414 381 395 41.303514 281.613482 161.458498 2.208060908 0.273211 28 50 342 Arg5 ArgTCT tRNA yes 272 46 60 30.902063 285.909219 158.405641 2.199770643 0.057983 28 51 17371 YIL052C intron no 572 321 337 43.62762 258.996545 151.3120825 2.179873608 0.512132 28 52 14955 MT_Met 3_flank no 276 196 224 28.888414 345.25237 187.070392 2.272005056 -0.365723 28 53 7542 snR79 snR79 yes 284 51 68 33.049745 292.762985 162.906365 2.211938053 0.08453 28 54 3103 Ser4 SerGCT 5_flank no 301 32.923733 264.160245 148.541989 2.171849235 0.268352 28 55 1495 Leu3 LeuCAA_iii 5_flank no 314 34.816717 300.407821 167.612269 2.224305805 0.055412 28 56 10852 "rRNA(18S,5.8S,25S)" 18S yes 7956 1146 1164 72.155386 290.232747 181.1940665 2.258143972 0.325881 28 57 18820 YNL302C intron no 651 221 242 30.180715 329.261594 179.7211545 2.2545992 -0.230405 28 58 5842 snR35 snR35 yes 740 396 413 31.962209 289.607721 160.784965 2.206245435 0.069542 28 59 3284 Thr2 ThrCGT tRNA yes 272 21 33 66.248264 300.97807 183.613167 2.263903821 0.203099 28 60 7373 snR68 snR68 yes 336 86 107 27.398785 307.944987 167.671886 2.224460249 -0.221292 28 61 5459 snR32 5_flank no 388 27.13824 309.203064 168.170652 2.225750208 -0.241568 28 62 19391 YPR043W intron no 503 401 420 28.843616 303.828929 166.3362725 2.220986965 -0.125925 28 63 17134 YHR010W intron no 661 401 417 28.613244 285.112066 156.862655 2.195519561 -0.051317 28 64 4455 telomerase RNA 3_flank no 1501 59.584649 304.936911 182.26078 2.260693225 0.132932 28 65 4499 U3b (snR17b) U3b yes 662 51 68 38.073941 285.462513 161.768227 2.208893226 0.218555 28 66 21079 YMR230W spliced yes 40 21 35 53.75493 317.174966 185.464948 2.268261842 0.000519 28 67 10063 RUF6 RUF6 yes 1251 161 180 32.566938 349.115979 190.8414585 2.280672727 -0.348849 28 68 1946 Lys2 LysCTT_ii 5_flank no 273 28.957262 271.235376 150.096319 2.176370042 0.033694 28 69 2181 Met2 MetCAT_ii tRNA yes 272 36 50 88.179533 294.529123 191.354328 2.281838289 0.380267 28 70 20179 YDL189W spliced yes 40 17 34 29.645994 274.983316 152.314655 2.182741691 0.051942 28 71 20938 YLR406C spliced yes 40 17 33 37.071681 305.451809 171.261745 2.233660365 0.036304 28 72 4976 snR10 5_flank no 445 32.204653 294.558495 163.381574 2.213203076 0.046224 28 73 9529 RUF3 RUF3 yes 631 31 47 38.469954 330.163353 184.3166535 2.265564577 -0.177549 28 74 12691 MT_ORF 8 5_flank no 491 31 59 28.159087 321.548249 174.853668 2.242674747 -0.255368 28 75 5149 snR13 5_flank no 324 32.113952 280.177482 156.145717 2.193530076 0.135438 28 76 2400 Phe4 PheGAA_iv intron/tRNA no 291 i14 48 851.467011 686.497542 768.9822765 2.88591633 0.895636 28 77 6569 snR47 5_flank no 299 33.766935 319.383656 176.5752955 2.246929942 -0.108639 28 78 1826 Leu8 LeuTAG_i 3_flank no 301 33.649668 298.363285 166.0064765 2.220125032 0.058172 28 79 5333 snR30 snR30 yes 801 516 532 40.68188 295.080842 167.881361 2.225002481 0.141304 28 80 1882 Leu9 LeuTAG_ii 3_flank no 301 95.127755 315.198221 205.162988 2.312099016 0.260733 28 81 1088 Gly4 GlyTCC 5_flank no 272 39.78487 369.242417 204.5136435 2.310722286 -0.477141 28 82 17313 YHR203C intron no 369 241 260 27.683873 313.493798 170.5888355 2.231950605 -0.228989 28 83 11140 "rRNA(18S,5.8S,25S)" 18S yes 7956 2586 2599 114.971506 314.764857 214.8681815 2.332172108 0.379024 28 84 6422 snR45 5_flank no 372 29.501591 291.309952 160.4057715 2.20521999 -0.032449 28 85 19622 RNA14 1.1 RNA14 1.1 yes 401 341 361 33.261762 329.004008 181.132885 2.257997304 -0.188222 28 86 14906 MT_Ile 3_flank no 276 241 269 29.004298 336.152855 182.5785765 2.261449817 -0.306268 28 87 15621 YBR181C intron no 452 201 217 42.345361 290.912033 166.628697 2.221749798 0.184718 28 88 17381 YIL052C intron/exon no 572 521 535 79.601529 316.379483 197.990506 2.296644366 0.158801 28 89 99 Ala2 AlaTGC 3_flank no 273 33.645015 313.720209 173.682612 2.239756342 -0.065921 28 90 3677 Val2 ValAAC_ii 3_flank no 274 29.457354 312.089562 170.773458 2.232420373 -0.153329 28 91 65 Ala2 AlaTGC 5_flank no 273 56.145463 318.779018 187.4622405 2.272913803 0.000372 28 92 15370 YBL027W intron no 484 161 173 63.972615 272.692689 168.332652 2.226168366 0.443323 28 93 18733 YNL147W 3_exon no 220 201 218 30.456684 328.246524 179.351604 2.253705265 -0.219005 28 94 3180 Ser5 SerTGA tRNA yes 282 21 35 66.926651 305.227205 186.076928 2.269692528 0.171288 28 95 20865 YLR093C spliced yes 40 13 32 30.244437 298.059666 164.1520515 2.215246315 -0.041107 28 96 10652 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 146 163 37.444016 342.434034 189.939025 2.278614204 -0.281493 28 97 9613 RUF3 3_flank no 631 29.255199 304.560944 166.9080715 2.222477339 -0.11556 28 98 3212 Thr1 ThrAGT 5_flank no 273 31.920107 317.405207 174.662657 2.242200062 -0.116572 28 99 1160 His1 HisGTG tRNA yes 272 20:A 36 49.984336 296.157532 173.070934 2.238224137 0.161147 28 100 20933 YLR388W spliced yes 40 21 38 39.041473 375.64592 207.3436965 2.316690837 -0.527161 28 101 4084 SRP SRP yes 875 311 323 35.378376 282.990489 159.1844325 2.201900593 0.209645 28 102 21146 YNL246W spliced yes 40 5 21 49.850886 312.412795 181.1318405 2.2579948 0.019437 28 103 19206 YPL081W intron no 601 281 298 40.746062 319.255314 180.000688 2.255274165 -0.077208 28 104 14355 MT_ORF9; ORF10 5_flank/ORF9 no 578 91 103 37.091898 338.746099 187.9189985 2.273970689 -0.252719 29 2 9750 RUF4 RUF4 yes 988 526 541 32.381822 314.066563 173.2241925 2.238608546 -0.084493 29 3 19722 Negative Control no 60 NA #VALUE! 32.125673 297.772892 164.9492825 2.217350431 0.023677 29 4 5587 snR33 3_flank no 383 33.985661 285.296007 159.640834 2.203143988 0.161258 29 5 8434 snoRNA cluster 5 intergenic no 586 336 358 29.330007 326.80068 178.0653435 2.250579402 -0.242658 29 6 11197 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2871 2891 39.577274 294.821985 167.1996295 2.223235311 0.141242 29 7 8580 snR19 / U1 RNA U1 yes 868 396 410 205.554375 677.499422 441.5268985 2.644957167 -0.699244 29 8 10868 "rRNA(18S,5.8S,25S)" 18S yes 7956 1226 1239 32.508618 312.527054 172.517836 2.236834002 -0.070731 29 9 6739 snR49 3_flank no 365 32.223891 303.09884 167.6613655 2.224432999 -0.005775 29 10 7472 snR71 5_flank no 290 34.022852 314.175264 174.099058 2.240796421 -0.064879 29 11 3361 Thr3 ThrTGT_i 3_flank no 272 45.980259 307.56203 176.7711445 2.247411374 0.042356 29 12 6215 snR40 3_flank no 297 37.629808 332.403227 185.0165175 2.267210502 -0.198591 29 13 21051 YMR143W spliced yes 40 5 21 37.397716 290.053474 163.725595 2.214116577 0.171705 29 14 20527 YGR118W spliced yes 40 17 29 43.133038 336.50211 189.817574 2.278336419 -0.212194 29 15 2248 Phe1 PheGAA_i 3_flank no 292 30.987516 320.415846 175.701681 2.244775917 -0.15218 29 16 13182 MT_COX1 exon4 yes 13084 6931 6948 42.598181 344.584882 193.5915315 2.286886356 -0.277917 29 17 1309 Ile3 IleTAT_ii 5_flank no 333 30.668707 280.794301 155.731504 2.192376478 0.076793 29 18 8527 snR19 / U1 RNA U1 yes 868 131 147 44.289839 296.950549 170.620194 2.232030431 0.13333 29 19 14158 MT_COB intronic no 7308 6556 6573 38.458685 306.845807 172.652246 2.237172232 0.026935 29 20 5036 snR10 snR10 yes 445 211 223 98.360994 356.193874 227.277434 2.356556317 0.001375 29 21 12465 5S rRNA 5S yes 1420 1281 1293 20537.93707 12459.34173 16498.6394 4.217448131 0.112793 29 22 14080 MT_COB bi4 no 7308 5386 5406 29.364085 303.744386 166.5542355 2.221555681 -0.106738 29 23 6571 snR47 5_flank no 299 60.169466 379.697732 219.933599 2.342291581 -0.412914 29 24 9034 snR17a / U3a U3a yes 690 456 468 160.886435 448.279427 304.582931 2.483705562 -0.116986 29 25 12070 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7236 7254 30.387466 286.155653 158.2715595 2.199402882 0.037293 29 26 14058 MT_COB bi4 no 7308 5056 5078 29.55827 315.479036 172.518653 2.236836059 -0.169646 29 27 9138 snR7 U5 RNA 5_flank no 415 36.948098 302.95285 169.950474 2.23032238 0.058952 29 28 12977 MT_COX1 ai2 no 13084 3856 3875 36.974441 352.204397 194.589419 2.289119221 -0.360458 29 29 11623 "rRNA(18S,5.8S,25S)" 25S yes 7956 5001 5018 41.138472 315.769249 178.4538605 2.251525948 -0.045727 29 30 7798 snoRNA cluster1 snR75 yes 1574 786 805 41.133541 324.816419 182.97498 2.262391708 -0.123229 29 31 3578 Tyr2 TyrGTA_ii 3_flank no 289 30.726411 293.919232 162.3228215 2.210379583 0.001158 29 32 8141 snoRNA cluster 3; intergenic no 743 216 228 451.407661 1463.951932 957.6797965 2.981220326 -1.140781 29 33 11010 "rRNA(18S,5.8S,25S)" 18S yes 7956 1936 1954 39.215285 328.299448 183.7573665 2.264244758 -0.159287 29 34 9345 RUF1 RUF1 yes 750 301 317 47.712385 286.032872 166.8726285 2.222385107 0.24668 29 35 3267 Thr2 ThrCGT 5_flank no 272 28.838078 328.766566 178.802322 2.252373154 -0.271363 29 36 3620 Val1 ValAAC_i 3_flank no 274 33.083625 291.083659 162.083642 2.209739187 0.096191 29 37 13636 MT_ATP6 ATP6 yes 980 346 363 31.027456 299.697998 165.362727 2.218437626 -0.024509 29 38 13023 MT_COX1 ai2 no 13084 4546 4560 41.629745 295.015132 168.3224385 2.226142014 0.144029 29 39 8487 snR19 / U1 RNA 5_flank no 868 31.075487 313.410309 172.242898 2.236141324 -0.105264 29 40 8907 LSR1 / U2 RNA 3_flank no 1375 35.259275 280.523217 157.891246 2.198358052 0.229889 29 41 7796 snoRNA cluster1 snR75 yes 1574 776 792 57.373055 297.489433 177.431244 2.249030097 0.185716 29 42 9548 RUF3 RUF3 yes 631 126 145 28.760217 295.88096 162.3205885 2.210373609 -0.092727 29 43 11136 "rRNA(18S,5.8S,25S)" 18S yes 7956 2566 2583 55.88098 312.706051 184.2935155 2.265510055 0.048762 29 44 5641 snR34 snR34 yes 750 126 141 36.854498 325.514743 181.1846205 2.258121331 -0.141981 29 45 17776 YKL180W intron no 406 181 197 42.995317 319.385273 181.190295 2.258134932 -0.070672 29 46 5896 snR36 5_flank no 555 28.416638 281.305683 154.8611605 2.189942509 -0.044133 29 47 5818 snR35 snR35 yes 740 276 291 68.016914 301.779012 184.897963 2.266932127 0.205782 29 48 20586 YHR021C spliced yes 40 5 26 30.525976 299.852911 165.1894435 2.21798229 -0.042475 29 49 14545 MT_21S 21S_rRNA3 yes 4639 2386 2403 30.601158 290.917261 160.7592095 2.206175862 0.015794 29 50 20686 YIL133C spliced yes 40 1 17 41.13268 290.953906 166.043293 2.220221338 0.181663 29 51 4832 snR8 5_flank no 390 30.759446 276.896957 153.8282015 2.187035962 0.099995 29 52 13611 MT_ATP8/AAP1 3_flank no 347 301 327 30.788373 346.624908 188.7066405 2.275787183 -0.349154 29 53 5044 snR10 3_flank no 445 32.847703 284.008494 158.4280985 2.19983221 0.134023 29 54 2080 Lys4 LysTTT_ii tRNA yes 296 43 57 84.039932 332.148616 208.094274 2.31826013 0.07094 29 55 56 Ala2 AlaTGC 5_flank no 273 30.52134 295.815724 163.168532 2.212636406 -0.017676 29 56 20996 YML085C spliced yes 40 1 22 30.345342 309.281498 169.81342 2.229972009 -0.105675 29 57 5097 snR11 snR11 yes 458 86 106 30.148623 299.383325 164.765974 2.21686753 -0.052579 29 58 13831 MT_COB bi2 no 7308 1651 1672 27.899372 319.95322 173.926296 2.240365248 -0.255888 29 59 6352 snR43 snR43 yes 409 1 15 83.397225 306.04616 194.7216925 2.289414336 0.261122 29 60 9014 snR17a / U3a U3a yes 690 356 371 33.409833 301.10929 167.2595615 2.223390954 0.032569 29 61 15038 MT_COX 2; ORF1 ORF1exon1 yes 2427 1171 1192 29.109763 287.762197 158.43598 2.199853815 -0.036907 29 62 11190 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2836 2852 66.311611 322.419541 194.365576 2.28861935 0.031106 29 63 17504 YJL136C exon/intron no 560 41 57 32.460244 305.35944 168.909842 2.227654956 -0.014009 29 64 1153 His1 HisGTG 5_flank/tRNA no 272 32.2935 312.211329 172.2524145 2.236165318 -0.070982 29 65 4666 snR3 3_flank no 395 31.304107 292.923562 162.1138345 2.209820078 0.026856 29 66 13191 MT_COX1 exon4 yes 13084 7066 7084 32.399947 312.019588 172.2097675 2.23605778 -0.068101 29 67 8915 LSR1 / U2 RNA 3_flank no 1375 32.669846 325.257672 178.963759 2.252765093 -0.167355 29 68 9432 RUF2 RUF2 yes 468 1 17 42.954747 283.09068 163.0227135 2.212248118 0.262172 29 69 4114 SRP SRP yes 875 461 477 39.486774 305.374018 172.430396 2.236613826 0.042778 29 70 17574 YJL191W 5_exon no 508 1 19 35.915233 294.821649 165.368441 2.218452632 0.114662 29 71 16883 YGL189C intron no 269 81 98 28.09953 310.699724 169.399627 2.22891245 -0.194389 29 72 16874 YGL187C intron no 442 341 360 34.474166 295.153592 164.813879 2.216993781 0.094924 29 73 11287 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3321 3339 118.002606 332.476226 225.239416 2.352644393 0.27378 29 74 6737 snR49 3_flank no 365 30.408222 302.499046 166.453634 2.221293281 -0.062688 29 75 10117 RUF6 RUF6 yes 1251 431 450 38.531097 337.145582 187.8383395 2.27378424 -0.234725 29 76 12272 5S rRNA NTS2 no 1420 316 335 30.142699 273.005862 151.5742805 2.180625515 0.08737 29 77 1975 Lys2 LysCTT_ii 3_flank no 273 32.05079 300.844877 166.4478335 2.221278147 0.002343 29 78 2742 Pro5 ProTGG_iv tRNA yes 303 61 73 54.46606 282.519552 168.492806 2.226581363 0.306686 29 79 11252 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3146 3163 3776.012862 3576.861538 3676.4372 3.565427152 0.124123 29 80 17279 YHR141C intron no 541 101 117 43.234502 311.997317 177.6159095 2.249481864 -0.005687 29 81 12743 MT_COX1 ai1 no 13084 346 363 34.069678 298.15046 166.110069 2.220395959 0.065071 29 82 16320 YDR471W intron no 484 161 178 29.963841 289.279984 159.6219125 2.20309251 0.00102 29 83 7053 snR62 snR62 yes 300 56 75 37.968341 324.972566 181.4704535 2.258805925 -0.134604 29 84 2812 Pro6 ProTGG_v 3_flank no 302 33.676654 273.673069 153.6748615 2.18660283 0.2283 29 85 9953 RUF5-1 RUF5-1 yes 975 571 587 45.385201 328.240605 186.812903 2.271406869 -0.134076 29 86 2651 Pro4 ProTGG_iii 5_flank no 302 52.846438 314.488876 183.667657 2.264032686 0.017477 29 87 21687 copy of SH10242 no 1251 32.608396 269.125625 150.8670105 2.178594285 0.22549 29 88 11773 "rRNA(18S,5.8S,25S)" 25S yes 7956 5751 5769 4928.444181 9909.282067 7418.863124 3.870337359 -1.247232 29 89 11650 "rRNA(18S,5.8S,25S)" 25S yes 7956 5136 5153 43.239715 277.978592 160.6091535 2.205770293 0.313693 29 90 7806 snoRNA cluster1 snR75/intergenic no 1574 826 845 31.405901 282.359148 156.8825245 2.195574569 0.097876 29 91 9682 RUF4 RUF4 yes 988 186 204 32.938721 301.386039 167.16238 2.223138546 0.024418 29 92 17473 YJL001W exon/intron no 216 41 58 38.217445 306.549731 172.383588 2.236495916 0.029058 29 93 11167 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2721 2739 34.314861 311.398448 172.8566545 2.237686103 -0.039401 29 94 15397 YBL050W exon/intron no 216 41 60 36.024742 313.223101 174.6239215 2.242103737 -0.03651 29 95 17672 YKL006C intron/exon no 241 181 200 30.466871 284.625941 157.546406 2.1974085 0.048485 29 96 17483 YJL024C 5_exon no 177 21 38 35.897087 324.757842 180.3274645 2.256061876 -0.137879 29 97 13749 MT_COB exon1 yes 7308 421 438 32.195664 297.330304 164.762984 2.216859649 0.028688 29 98 236 Arg3 ArgCCG tRNA yes 272 36 48 83.147768 329.459719 206.3037435 2.314507109 0.084237 29 99 13374 MT_COX1 intronic no 13084 9811 9839 28.422203 335.771847 182.097025 2.260302851 -0.32535 29 100 12975 MT_COX1 ai2 no 13084 3826 3847 28.333719 339.762104 184.0479115 2.264930894 -0.350357 29 101 9982 RUF5-1 RUF5-1 yes 975 716 736 35.462347 363.719735 199.591041 2.300141043 -0.454651 29 102 2363 Phe3 PheGAA_iii 3_flank no 291 83.085466 296.028517 189.5569915 2.277739807 0.339133 29 103 15222 MT_COX3 cox3 no 1010 751 768 29.836073 297.744498 163.7902855 2.21428814 -0.053354 29 104 12918 MT_COX1 ai2 no 13084 2971 2986 36.974839 345.204901 191.08987 2.281237665 -0.305395 30 2 546 Cys1 CysGCA tRNA yes 272 31 48 34.502758 294.90023 164.701494 2.216697539 0.09739 30 3 12188 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7826 7844 34.274533 301.036742 167.6556375 2.224418161 0.043744 30 4 14741 MT_ORF11; Leu; Gln 5_flank no 716 1 27 31.826066 317.811667 174.8188665 2.2425883 -0.120956 30 5 13437 MT_COX1 intronic no 13084 10756 10778 31.533312 309.794148 170.66373 2.232141233 -0.068625 30 6 7390 snR68 3_flank no 336 56.824807 384.182332 220.5035695 2.343415624 -0.465848 30 7 10885 "rRNA(18S,5.8S,25S)" 18S yes 7956 1311 1324 30670.75141 20519.50781 25595.12961 4.408157333 -0.225339 30 8 7204 snR64 snR64 yes 301 86 98 32.691118 274.877785 153.7844515 2.186912428 0.189198 30 9 11202 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2896 2913 51.029145 332.284369 191.656757 2.282524135 -0.135393 30 10 19204 YPL081W intron no 601 241 253 116.701949 370.762203 243.732076 2.386912688 0.026995 30 11 14619 MT_21S Sce1 no 4639 3496 3517 29.866408 294.146526 162.006467 2.209532351 -0.029909 30 12 16067 YDR005C intron no 180 61 77 47.818734 336.710612 192.264673 2.283899494 -0.188501 30 13 854 Glu2 GluTTC_i tRNA yes 272 36 49 436.762925 611.166603 523.964764 2.719302082 0.307891 30 14 14445 MT_21S 21S_rRNA3 yes 4639 886 906 33.16443 314.634209 173.8993195 2.240297883 -0.079068 30 15 12229 5S rRNA NTS2 no 1420 101 115 54.741546 288.937985 171.8397655 2.235123671 0.248624 30 16 9441 RUF2 RUF2 yes 468 46 63 74.305349 350.69045 212.4978995 2.327354641 -0.121686 30 17 17138 YHR010W intron no 661 481 498 39.52942 323.366935 181.4481775 2.25875261 -0.116626 30 18 19761 Negative Control no 60 NA #VALUE! 50.361612 303.52893 176.945271 2.24783896 0.098094 30 19 18153 YLR426W 5_exon no 171 1 13 53.515899 290.254881 171.88539 2.235238964 0.231059 30 20 8586 snR19 / U1 RNA U1 yes 868 426 441 76.827691 352.125334 214.4765125 2.331379739 -0.114502 30 21 6810 snR52 5_flank no 292 40.349616 296.863086 168.606351 2.226873929 0.12373 30 22 6833 snR52 snR52 yes 292 71 87 62.176901 291.146674 176.6617875 2.24714262 0.265366 30 23 4320 telomerase RNA telomerase yes 1501 636 652 52.607363 291.795734 172.2015485 2.236037052 0.212877 30 24 17150 YHR012W intron no 219 61 77 38.651035 281.086031 159.868533 2.20376299 0.262965 30 25 8046 snoRNA cluster 2 intergenic no 739 466 487 28.56902 305.795545 167.1822825 2.22319025 -0.147793 30 26 6774 snR50 snR50 yes 290 46 66 32.885626 302.189622 167.537624 2.224112352 0.01717 30 27 8633 snR19 / U1 RNA U1/3_flank no 868 28.757103 325.143326 176.9502145 2.247851093 -0.253895 30 28 15394 YBL040C 3_exon no 197 161 178 32.914169 306.057551 169.48586 2.229133471 -0.013903 30 29 2815 Pro6 ProTGG_v 3_flank no 302 34.951884 275.858524 155.405204 2.191465558 0.252467 30 30 8977 snR17a / U3a U3a yes 690 171 188 30.743202 315.020065 172.8816335 2.237748857 -0.125922 30 31 14383 MT_ORF9; ORF10 3_flank no 578 511 539 32.833162 303.293777 168.0634695 2.225473325 0.007495 30 32 4236 telomerase RNA telomerase yes 1501 216 234 30.787355 294.125929 162.456642 2.210737472 0.001933 30 33 10347 RUF7 RUF7 yes 700 346 362 30.847863 284.921265 157.884564 2.198339672 0.062523 30 34 17767 YKL180W 5_exon no 406 1 18 30.915032 276.034229 153.4746305 2.186036596 0.11199 30 35 15718 YBR255C 5_exon no 194 1 18 44.685975 308.148914 176.4174445 2.246541527 0.03306 30 36 17478 YJL001W intron no 216 141 162 31.047607 334.350629 182.699118 2.261736451 -0.256584 30 37 14277 MT_VAR1 VAR1 yes 1467 361 373 33.216105 241.357023 137.286564 2.137628036 0.402305 30 38 1382 Leu1 LeuCAA_i 5_flank/tRNA no 315 30.084732 317.732895 173.9088135 2.240321592 -0.164318 30 39 12948 MT_COX1 ai2 no 13084 3421 3442 31.135109 304.712579 167.923844 2.225112367 -0.051444 30 40 18728 YNL147W intron no 220 101 124 31.075488 323.599582 177.337535 2.248800667 -0.175441 30 41 6851 snR52 3_flank no 292 29.912759 296.278631 163.095695 2.212442498 -0.041587 30 42 16429 YER074W intron no 566 141 160 49.702563 349.611448 199.6570055 2.300284553 -0.274793 30 43 1532 Leu3 LeuCAA_iii 3_flank no 314 36.89594 278.843637 157.8697885 2.198299027 0.263518 30 44 8218 snoRNA cluster 3; snR51 yes 743 601 622 30.499989 415.90008 223.2000345 2.348694257 -0.843847 30 45 19059 YOR234C intron/exon no 627 561 582 30.383755 331.585985 180.98487 2.25764227 -0.245013 30 46 3839 RNaseP RNaseP yes 569 161 178 58.253835 336.627102 197.4404685 2.295436173 -0.125834 30 47 11327 "rRNA(18S,5.8S,25S)" 25S yes 7956 3521 3536 87.077803 325.552774 206.3152885 2.314531412 0.137163 30 48 11343 "rRNA(18S,5.8S,25S)" 25S yes 7956 3601 3614 40007.85446 14999.22064 27503.53755 4.439388557 0.620556 30 49 4099 SRP SRP yes 875 386 400 122.873333 348.730434 235.8018835 2.37254727 0.19703 30 50 20882 YLR211C spliced yes 40 13 30 32.524227 305.181709 168.852968 2.227508699 -0.011755 30 51 5374 snR31 5_flank no 425 34.663408 304.537577 169.6004925 2.229427109 0.019842 30 52 2152 Met1 MetCAT_i 3_flank no 273 34.690524 368.695023 201.6927735 2.304690338 -0.495052 30 53 16489 YER102W 3_exon no 460 421 437 30.514599 285.939745 158.227172 2.199281066 0.044611 30 54 9865 RUF5-1 RUF5-1 yes 975 131 152 29.413336 323.258918 176.336127 2.246341298 -0.219632 30 55 19754 Negative Control no 60 NA #VALUE! 36.54591 288.488323 162.5171165 2.210899108 0.175537 30 56 12138 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7576 7594 30.234245 283.77069 157.0024675 2.195906478 0.040584 30 57 16347 YDR500C intron no 439 221 239 34.197682 330.217278 182.20748 2.260566202 -0.188888 30 58 2154 Met2 MetCAT_ii 5_flank no 272 55.531102 296.615914 176.073508 2.245694017 0.183644 30 59 19939 YBL027W spliced yes 40 13 30 95.428959 343.894763 219.661861 2.341754659 0.062658 30 60 18650 YNL112W intron no 1102 181 200 31.45172 291.013326 161.232523 2.20745265 0.043815 30 61 9355 RUF1 RUF1 yes 750 351 373 29.133652 304.169138 166.651395 2.221808953 -0.117538 30 62 12423 5S rRNA NTS2 no 1420 1071 1087 72.318468 315.042468 193.680468 2.287085826 0.124541 30 63 11284 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3306 3322 42.189672 292.649265 167.4194685 2.223805959 0.167746 30 64 19390 YPR043W intron no 503 381 398 43.920096 309.288598 176.604347 2.247001389 0.020472 30 65 14394 MT_21S 21S_rRNA3 yes 4639 121 145 28.428991 305.433359 166.931175 2.22253745 -0.153036 30 66 16158 YDR129C intron no 211 81 93 50.015498 317.565079 183.7902885 2.264322559 -0.022934 30 67 7360 snR68 snR68 yes 336 21 38 30.813219 300.381262 165.5972405 2.219053095 -0.035937 30 68 10880 "rRNA(18S,5.8S,25S)" 18S yes 7956 1286 1301 2126.974026 1011.374618 1569.174322 3.195671193 1.422829 30 69 17861 YLL050C 5_exon no 279 21 40 37.654773 329.128569 183.391671 2.263379608 -0.170868 30 70 20259 YDR397C spliced yes 40 5 17 78.147984 317.854668 198.001326 2.296668099 0.138675 30 71 15872 YDL079C 3_exon no 392 361 377 57.11391 293.8786 175.496255 2.244267853 0.215985 30 72 14295 MT_VAR1 VAR1 yes 1467 631 657 28.388052 328.325369 178.3567105 2.251289454 -0.285314 30 73 12926 MT_COX1 ai2 no 13084 3091 3106 32.597652 279.851745 156.2246985 2.193749695 0.15319 30 74 7669 snoRNA cluster1 snR78 yes 1574 141 159 30.499519 286.526788 158.5131535 2.200065306 0.040319 30 75 9568 RUF3 RUF3 yes 631 226 243 30.411457 319.543746 174.9776015 2.242982459 -0.163502 30 76 13293 MT_COX1 ai5a no 13084 8596 8622 31.338881 364.435123 197.887002 2.296417269 -0.472349 30 77 19646 SIR1 2.2 SIR1 2.2 yes 401 41 56 38.465501 290.854748 164.6601245 2.216588439 0.176494 30 78 21602 copy of SH6673 no 313 32.278396 321.925481 177.1019385 2.248223315 -0.146897 30 79 1265 Ile2 IleTAT_i tRNA yes 333 21 37 42.61874 312.325732 177.472236 2.249130421 -0.010615 30 80 4917 snR9 5_flank/snR9 no 387 32.364118 308.484304 170.424211 2.231531292 -0.040399 30 81 15751 YCR031C intron no 407 101 119 32.37252 300.051056 166.211788 2.220661821 0.017637 30 82 19302 YPL198W intron no 509 101 118 30.240842 305.355114 167.797978 2.224786723 -0.085754 30 83 3380 Thr4 ThrTGT_ii 5_flank/tRNA no 272 32.10796 305.661056 168.884508 2.227589813 -0.025038 30 84 3646 Val2 ValAAC_ii 5_flank no 274 29.802554 299.520813 164.6616835 2.216592551 -0.06548 30 85 705 Gln3 GlnTTG_ii tRNA yes 272 56 68 67.765109 353.777759 210.771434 2.32381175 -0.187541 30 86 14031 MT_COB exon4/bi4 no 7308 4651 4670 31.084234 324.70225 177.893242 2.25015945 -0.183731 30 87 6020 snR37 snR37 yes 586 16 38 30.681809 288.303209 159.492509 2.20274029 0.035162 30 88 1409 Leu1 LeuCAA_i 3_flank no 315 36.072534 321.184668 178.628601 2.251950997 -0.106522 30 89 357 Arg5 ArgTCT 3_flank no 272 2063.321554 1420.768959 1742.045257 3.241059433 0.847127 30 90 9854 RUF5-1 RUF5-1 yes 975 76 93 29.575843 289.359398 159.4676205 2.202672514 -0.019597 30 91 13497 MT_COX1 intronic no 13084 11656 11677 27.436665 316.365688 171.9011765 2.235278849 -0.25507 30 92 8439 snoRNA cluster 5 snR128 yes 586 361 376 9981.484568 4380.873732 7181.17915 3.856195761 0.973267 30 93 14877 MT_Ala 5_flank no 276 61 89 34.498422 390.924787 212.7116045 2.327791184 -0.656431 30 94 20482 YGL226C-A spliced yes 40 13 32 34.410101 281.963473 158.186787 2.199170205 0.195852 30 95 20487 YGL232W spliced yes 40 9 28 38.054515 320.660486 179.3575005 2.253719543 -0.097074 30 96 5017 snR10 snR10 yes 445 116 128 135.627144 444.220978 289.924061 2.462284259 -0.241753 30 97 15086 MT_COX 2; ORF1 ORF1exon1 yes 2427 1891 1913 28.794906 338.047401 183.4211535 2.26344942 -0.324182 30 98 7347 snR68 5_flank no 336 32.403491 281.034512 156.7190015 2.195121656 0.139187 30 99 4013 SRP 5_flank no 875 34.141487 271.578956 152.8602215 2.184294485 0.256758 30 100 21205 YOL127W spliced yes 40 21 35 91.378976 343.509817 217.4443965 2.33734822 0.039413 30 101 8649 snR19 / U1 RNA 3_flank no 868 31.145735 271.283184 151.2144595 2.179593321 0.146661 30 102 3856 RNaseP RNaseP yes 569 246 258 75.944268 301.634476 188.789372 2.275977542 0.252307 30 103 16565 YER133W intron no 625 461 478 28.14189 301.243759 164.6928245 2.216674678 -0.150415 30 104 3066 Ser3 SerCGA tRNA yes 301 26 i3 73.977864 395.45627 234.717067 2.37054467 -0.407083 31 2 2770 Pro6 ProTGG_v 5_flank no 302 29.905147 311.663759 170.784453 2.232448333 -0.135061 31 3 5460 snR32 5_flank no 388 29.792066 303.6068 166.699433 2.221934123 -0.090794 31 4 16852 YGL183C intron no 183 81 97 44.841716 303.191147 174.0164315 2.240590258 0.078046 31 5 14901 MT_Ile tRNA/3_flank no 276 166 188 29.420909 302.307793 165.864351 2.219753054 -0.095991 31 6 16135 YDR064W 3_exon no 639 621 637 46.258326 313.355946 179.807136 2.254806924 -0.00689 31 7 12131 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7541 7554 41.607778 283.387799 162.4977885 2.210847455 0.256332 31 8 9539 RUF3 RUF3 yes 631 81 97 32.859852 285.599235 159.2295435 2.20202365 0.124126 31 9 12265 5S rRNA NTS2 no 1420 281 301 36.720475 318.077386 177.3989305 2.248950997 -0.077733 31 10 16336 YDR500C 5_exon no 439 1 20 28.187663 298.947656 163.5676595 2.213697439 -0.137701 31 11 2532 Pro1 ProAGG 3_flank no 272 37.106382 275.416404 156.261393 2.193851692 0.296435 31 12 5060 snR11 5_flank no 458 35.776213 334.760781 185.268497 2.267801578 -0.22295 31 13 305 Arg4 ArgCCT 3_flank no 272 33.47406 293.570832 163.522446 2.213577375 0.092778 31 14 14448 MT_21S 21S_rRNA3 yes 4639 931 953 27.263243 308.280955 167.772099 2.224719738 -0.23045 31 15 17225 YHR041C 3_exon no 201 181 197 44.909642 307.369645 176.1396435 2.245857113 0.040717 31 16 16208 YDR381W intron no 866 61 77 36.828387 308.285225 172.556806 2.236932093 0.009904 31 17 16216 YDR381W intron no 866 221 238 28.927456 282.787496 155.857476 2.192727639 -0.023447 31 18 16411 YER056C intron no 497 281 297 62.741231 331.764324 197.2527775 2.295023127 -0.062556 31 19 2469 Phe5 PheGAA_v 3_flank no 291 39.129021 306.184525 172.656773 2.23718362 0.034541 31 20 5479 snR32 snR32 yes 388 56 72 84.753872 379.090975 231.9224235 2.365342741 -0.231108 31 21 4286 telomerase RNA telomerase yes 1501 466 480 107.623583 368.333559 237.978571 2.376537852 -0.014584 31 22 639 Gln2 GlnTTG_i 5_flank no 272 34.260471 330.652538 182.4565045 2.26115935 -0.192401 31 23 2243 Phe1 PheGAA_i tRNA/3_flank no 292 34.641899 300.603254 167.6225765 2.224332512 0.05172 31 24 15646 YBR189W intron no 513 61 77 45.432483 341.171316 193.3018995 2.286236122 -0.235816 31 25 15447 YBL087C intron no 604 101 120 30.955039 324.504437 177.729738 2.249760101 -0.18395 31 26 8796 LSR1 / U2 RNA U2 yes 1375 621 639 31.028682 311.1903 171.109491 2.233274099 -0.09375 31 27 5871 snR35 3_flank no 740 33.111046 262.098115 147.6045805 2.169099835 0.287602 31 28 4373 telomerase RNA telomerase yes 1501 901 913 57.278642 323.103061 190.1908515 2.279189623 -0.02818 31 29 9728 RUF4 RUF4 yes 988 416 431 32.932296 277.000573 154.9664345 2.190237641 0.18271 31 30 2259 Phe1 PheGAA_i 3_flank no 292 48.587078 337.664258 193.125668 2.285839999 -0.191521 31 31 5822 snR35 snR35 yes 740 296 315 30.768663 266.011613 148.390138 2.171405039 0.153866 31 32 16155 YDR129C 5_exon no 211 21 40 32.894561 329.008136 180.9513485 2.257561824 -0.192849 31 33 641 Gln2 GlnTTG_i 5_flank/tRNA no 272 35.065386 293.181493 164.1234395 2.21517061 0.118533 31 34 13154 MT_COX1 intronic no 13084 6511 6533 28.86033 316.776238 172.818284 2.237589688 -0.202153 31 35 9753 RUF4 RUF4 yes 988 541 553 144.173897 387.349176 265.7615365 2.424492126 0.092161 31 36 6482 snR46 5_flank no 397 31.130476 286.319035 158.7247555 2.200644667 0.063036 31 37 18793 YNL301C intron no 532 201 220 31.196072 282.123082 156.659577 2.19495695 0.092416 31 38 4287 telomerase RNA telomerase yes 1501 471 483 110.572184 356.448803 233.5104935 2.368306402 0.076063 31 39 12751 MT_COX1 ai1 no 13084 466 484 31.206955 276.501017 153.853986 2.187108752 0.124343 31 40 18900 YOL120C intron no 547 201 218 30.069478 307.512483 168.7909805 2.227349236 -0.10465 31 41 964 Gly1 GlyCCC_i tRNA/3_flank no 272 33.086267 295.544484 164.3153755 2.215678204 0.068273 31 42 1043 Gly3 GlyGCC 5_flank no 271 29.759455 273.177974 151.4687145 2.18032294 0.066649 31 43 17481 YJL001W 3_exon no 216 201 215 43.103167 293.147873 168.12552 2.225633641 0.164946 31 44 6997 snR60 snR60 yes 304 66 85 30.429794 404.621946 217.52587 2.337510914 -0.767311 31 45 2760 Pro5 ProTGG_iv 3_flank no 303 32.34021 360.405509 196.3728595 2.293081464 -0.438411 31 46 2447 Phe5 PheGAA_v tRNA yes 291 6 20 44.575672 278.257471 161.4165715 2.207948119 0.313669 31 47 3637 Val2 ValAAC_ii 5_flank no 274 34.238504 267.878349 151.0584265 2.179144957 0.284981 31 48 14266 MT_VAR1 VAR1 yes 1467 196 220 30.14545 295.166017 162.6557335 2.211269376 -0.026568 31 49 3665 Val2 ValAAC_ii tRNA/3_flank no 274 30.179361 282.305977 156.242669 2.193799649 0.044652 31 50 15968 YDL130W intron/exon no 401 341 357 34.330615 289.025536 161.6780755 2.208651131 0.145047 31 51 9134 snR7 U5 RNA 5_flank no 415 36.425871 271.485268 153.9555695 2.187395405 0.3243 31 52 1013 Gly2 GlyCCC_ii tRNA yes 272 56 68 50.905343 313.027703 181.966523 2.259991497 0.019387 31 53 15789 YDL029W intron no 223 141 161 30.230419 328.551004 179.3907115 2.253799952 -0.224384 31 54 19891 Positive Control 7 no 22 NA #VALUE! 111.005977 327.359286 219.1826315 2.340806137 0.268486 31 55 21106 YNL069C spliced yes 40 1 17 38.346314 277.724397 158.0353555 2.198754258 0.289422 31 56 13243 MT_COX1 ai4 no 13084 7846 7865 34.187301 315.656255 174.921778 2.242843883 -0.074505 31 57 17189 YHR021C intron no 650 361 378 34.125585 307.751931 170.938758 2.232840544 -0.012581 31 58 12342 5S rRNA NTS2 no 1420 666 681 77.095475 298.493924 187.7946995 2.27368333 0.284426 31 59 4544 U3b (snR17b) U3b yes 662 276 290 33.821406 287.883168 160.852287 2.20642724 0.139578 31 60 10678 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 276 289 88.832342 323.8073 206.319821 2.314540952 0.160548 31 61 5517 snR32 3_flank no 388 33.153887 294.993436 164.0736615 2.21503887 0.073841 31 62 18160 YLR426W 3_exon no 171 141 158 30.813769 261.689801 146.251785 2.165101175 0.177954 31 63 20490 YGL232W spliced yes 40 21 38 30.53125 331.21277 180.87201 2.257371365 -0.240225 31 64 4263 telomerase RNA telomerase yes 1501 351 368 29.41835 288.161245 158.7897975 2.200822595 -0.022368 31 65 16574 YER179W 5_exon no 192 21 35 67.432514 316.725255 192.0788845 2.283479625 0.082078 31 66 2599 Pro3 ProTGG_ii 5_flank no 303 32.539976 326.64518 179.592578 2.254288385 -0.179524 31 67 21054 YMR143W spliced yes 40 17 35 28.949064 286.755123 157.8520935 2.198250346 -0.04084 31 68 12341 5S rRNA NTS2 no 1420 661 678 49.303941 350.740384 200.0221625 2.301078118 -0.285528 31 69 21601 copy of SH6672 no 313 30.714955 296.234552 163.4747535 2.213450691 -0.013678 31 70 17971 YLR185W intron/exon no 459 401 418 30.048875 292.836109 161.442492 2.208017853 -0.015328 31 71 8322 snoRNA cluster4 intergenic no 638 396 418 29.276669 312.026329 170.651499 2.232110107 -0.159381 31 72 21287 YPL143W spliced yes 40 21 37 33.554443 315.73338 174.6439115 2.24215345 -0.082845 31 73 14851 MT_Ser2; Arg2 5_flank no 360 31 59 30.501156 324.641471 177.5713135 2.249372807 -0.191109 31 74 3941 RNase MRP RNaseMRP yes 540 121 145 28.410664 321.440244 174.925454 2.24285301 -0.245462 31 75 9246 snR6 / U6 RNA U6/3_flank no 312 30.423434 291.237346 160.83039 2.206368115 0.007687 31 76 397 Asn1 AsnGTT tRNA/3_flank no 274 49.019229 310.157093 179.588161 2.254277703 0.034434 31 77 16710 YGL031C intron no 556 341 358 30.394036 317.913231 174.1536335 2.24093254 -0.154682 31 78 7932 snoRNA cluster1 snR72 yes 1574 1456 1470 48.091616 285.420085 166.7558505 2.22208108 0.25369 31 79 8827 LSR1 / U2 RNA U2 yes 1375 776 793 37.812859 299.118651 168.465755 2.226511633 0.096652 31 80 7348 snR68 5_flank no 336 34.777683 325.580542 180.1791125 2.255704443 -0.147841 31 81 11723 "rRNA(18S,5.8S,25S)" 25S yes 7956 5501 5517 32.697803 287.146341 159.922072 2.203908408 0.109017 31 82 799 Glu1 GluCTC tRNA yes 272 11 27 1810.818223 1600.216714 1705.517469 3.231856172 0.488722 31 83 12420 5S rRNA NTS2 no 1420 1056 1073 34.395043 269.210016 151.8025295 2.181279008 0.280615 31 84 18092 YLR367W intron no 583 61 82 29.957239 303.699201 166.82822 2.222269516 -0.085581 31 85 10635 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 61 79 31.577818 343.588056 187.582937 2.273193331 -0.316924 31 86 6432 snR45 snR45 yes 372 6 25 31.139277 293.562859 162.351068 2.21045515 0.017329 31 87 20109 YDL064W spliced yes 40 9 28 43.434527 358.326018 200.8802725 2.302937289 -0.376365 31 88 9698 RUF4 RUF4 yes 988 266 285 28.36665 293.36461 160.86563 2.206463264 -0.102762 31 89 5712 snR34 snR34 yes 750 481 496 47.118524 287.149286 167.133905 2.22306456 0.234211 31 90 10814 "rRNA(18S,5.8S,25S)" 18S yes 7956 956 976 278.369614 711.381284 494.875449 2.694495909 -0.467482 31 91 16928 YGR001C intron no 162 81 100 31.216195 276.387375 153.801785 2.186961376 0.125351 31 92 6334 snR43 5_flank no 409 106.103969 325.478542 215.7912555 2.334033842 0.252294 31 93 1125 Gly4 GlyTCC 3_flank no 272 30.913921 299.930971 165.422446 2.218594438 -0.029768 31 94 11534 "rRNA(18S,5.8S,25S)" 25S yes 7956 4556 4573 400.391154 866.698318 633.544736 2.801777287 -0.396481 31 95 13735 MT_COB exon1 yes 7308 211 233 30.853824 280.607258 155.730541 2.192373792 0.087031 31 96 18565 YNL012W 5_exon no 184 1 17 53.16381 360.667812 206.915811 2.315793678 -0.332885 31 97 6504 snR46 snR46 yes 397 11 27 30.853525 295.192995 163.02326 2.212249574 -0.002493 31 98 9181 snR7 U5 RNA U5 yes 415 176 192 53.106633 259.405671 156.256152 2.193837125 0.52996 31 99 1675 Leu6 LeuGAG 5_flank no 282 30.745901 258.875781 144.810841 2.160801076 0.188925 31 100 21220 YOR182C spliced yes 40 1 22 36.159988 374.732826 205.446407 2.31269855 -0.533699 31 101 7594 snR189 snR189 yes 389 41 57 33.248339 276.885605 155.066972 2.190519306 0.193447 31 102 1874 Leu9 LeuTAG_ii 3_flank no 301 32.169227 300.617557 166.393392 2.221136075 0.007586 31 103 17578 YJL191W intron no 508 81 102 32.000229 302.922342 167.4612855 2.223914421 -0.011976 31 104 11784 "rRNA(18S,5.8S,25S)" 25S yes 7956 5806 5819 40652.31534 13956.20946 27304.2624 4.436230449 0.759806 32 2 756 Gln4 GlnTTG_iii tRNA yes 272 51 63 45.086988 316.586989 180.8369885 2.257287266 -0.039768 32 3 502 Asp2 AspGTC_ii tRNA/3_flank no 272 31.822051 289.001069 160.41156 2.205235662 0.068813 32 4 17003 YGR118W 3_exon no 420 401 416 42.561124 303.240732 172.900928 2.237797324 0.070163 32 5 5631 snR34 snR34 yes 750 76 93 33.711789 288.657083 161.184436 2.207323104 0.131245 32 6 7612 snR189 snR189 yes 389 131 150 31.368452 291.750351 161.5594015 2.208332236 0.036389 32 7 7647 snoRNA cluster1 5_flank no 1574 31 51 35.374611 302.888526 169.1315685 2.228224676 0.04167 32 8 7280 snR65 3_flank no 300 28.796832 304.137669 166.4672505 2.221328806 -0.12949 32 9 19136 YPL075W intron no 851 241 260 28.549558 313.738684 171.144121 2.233361985 -0.195719 32 10 15566 YBR084C intron no 606 81 100 30.350153 311.397927 170.87404 2.232676088 -0.118066 32 11 12443 5S rRNA NTS2 no 1420 1171 1187 111.576982 366.315697 238.9463395 2.378300382 0.022413 32 12 1695 Leu6 LeuGAG tRNA yes 282 41 55 39.936103 276.451618 158.1938605 2.199189625 0.317594 32 13 21338 YPR063C spliced yes 40 21 37 29.554043 318.799876 174.1769595 2.240990705 -0.189075 32 14 21307 YPL218W spliced yes 40 25 40 43.338115 284.613717 163.975916 2.214780066 0.247991 32 15 12679 MT_Trp tRNA yes 274 106 126 27.225766 304.522751 165.8742585 2.219778994 -0.216254 32 16 3189 Ser5 SerTGA tRNA yes 282 57 72 13413.15434 10670.37463 12041.76448 4.080690129 -0.14979 32 17 17128 YHR010W intron no 661 281 296 63.146278 342.023004 202.584641 2.306606516 -0.134962 32 18 8576 snR19 / U1 RNA U1 yes 868 376 393 31.35335 287.42428 159.388815 2.202457842 0.063392 32 19 7091 snR63 5_flank no 455 31.634668 288.684747 160.1597075 2.204553267 0.064663 32 20 1450 Leu2 LeuCAA_ii tRNA yes 314 20:B 34 28.944928 299.538793 164.2418605 2.215483856 -0.099141 32 21 459 Asp1 AspGTC_i 3_flank no 271 36.515549 272.375663 154.445606 2.188775557 0.317226 32 22 16765 YGL087C 3_exon no 185 161 178 116.891452 423.772635 270.3320435 2.431897527 -0.259695 32 23 10823 "rRNA(18S,5.8S,25S)" 18S yes 7956 1001 1021 30.978832 311.235649 171.1072405 2.233268387 -0.095697 32 24 16223 YDR381W intron no 866 361 378 31.178084 286.880057 159.0290705 2.201476521 0.061028 32 25 6404 snR43 3_flank no 409 41.890667 282.443862 162.1672645 2.209963191 0.266273 32 26 21909 copy of SH19562 no 401 31.248909 278.690371 154.96964 2.190246624 0.115928 32 27 18719 YNL130C intron no 541 461 482 29.040211 309.595293 169.317752 2.228702494 -0.153448 32 28 3116 Ser4 SerGCT 5_flank/tRNA no 301 37.327726 311.330956 174.329341 2.241370488 -0.016336 32 29 8441 snoRNA cluster 5 snR128 yes 586 371 388 45.584723 303.071443 174.328083 2.241367354 0.08147 32 30 14110 MT_COB intronic no 7308 5836 5862 30.796862 300.074869 165.4358655 2.218629668 -0.034612 32 31 8121 snoRNA cluster 3; snR41 yes 743 116 138 30.774376 284.769284 157.77183 2.198029463 0.061015 32 32 8428 snoRNA cluster 5 intergenic no 586 306 323 47.59131 348.171232 197.881271 2.296404691 -0.276988 32 33 13435 MT_COX1 intronic no 13084 10726 10743 49.827554 340.266918 195.047236 2.2901398 -0.203916 32 34 19778 Negative Control no 60 NA #VALUE! 37.308659 288.460719 162.884689 2.211880263 0.184326 32 35 3346 Thr3 ThrTGT_i 3_flank no 272 33.208408 295.173538 164.190973 2.215349277 0.074433 32 36 10919 "rRNA(18S,5.8S,25S)" 18S yes 7956 1481 1501 42.860741 330.803176 186.8319585 2.271451166 -0.167467 32 37 16558 YER133W intron no 625 321 338 33.381454 303.844873 168.6131635 2.226891477 0.009866 32 38 10062 RUF6 RUF6 yes 1251 156 177 29.165343 314.57423 171.8697865 2.235199537 -0.178332 32 39 2186 Met2 MetCAT_ii tRNA yes 272 61 73 35.497797 260.676939 148.087368 2.170518014 0.372872 32 40 10836 "rRNA(18S,5.8S,25S)" 18S yes 7956 1066 1083 54.519449 321.474117 187.996783 2.274150418 -0.030143 32 41 9567 RUF3 RUF3 yes 631 221 238 28.904557 303.351897 166.128227 2.22044343 -0.120828 32 42 10428 RUF8 RUF8 yes 1151 66 85 32.901124 296.209062 164.555093 2.216311328 0.058278 32 43 3394 Thr4 ThrTGT_ii tRNA yes 272 56 70 64.031591 355.419758 209.7256745 2.3216516 -0.22388 32 44 10306 RUF7 RUF7 yes 700 141 155 102.611575 436.557684 269.5846295 2.430695127 -0.419381 32 45 8163 snoRNA cluster 3; snR70 yes 743 326 343 32.284166 338.866586 185.575376 2.268520349 -0.273569 32 46 1904 Lys1 LysCTT_i 5_flank no 272 78.504935 327.08557 202.7952525 2.307057784 0.07222 32 47 9824 RUF5-1 5_flank no 975 30.03674 269.717187 149.8769635 2.175734886 0.098037 32 48 21082 YMR292W spliced yes 40 5 17 48.412276 246.180095 147.2961855 2.1681915 0.663437 32 49 7228 snR65 5_flank no 300 66.939393 278.695892 172.8176425 2.237588076 0.401284 32 50 21286 YPL143W spliced yes 40 17 33 32.036255 294.067826 163.0520405 2.212326238 0.043819 32 51 11369 "rRNA(18S,5.8S,25S)" 25S yes 7956 3731 3746 12848.55265 6464.723832 9656.638241 3.984825962 0.632337 32 52 3781 Val4 ValTAC 3_flank no 274 31.993123 312.025199 172.009161 2.235551578 -0.073378 32 53 7326 snR66 3_flank no 286 33.989186 321.964517 177.9768515 2.25036352 -0.125813 32 54 5358 snR30 3_flank no 801 493.808156 484.859657 489.3339065 2.68960531 0.851825 32 55 3648 Val2 ValAAC_ii 5_flank/tRNA no 274 29.897951 302.486242 166.1920965 2.220610366 -0.080281 32 56 17551 YJL189W 5_exon no 486 21 38 66.848392 332.901107 199.8747495 2.300757932 -0.044411 32 57 12951 MT_COX1 ai2 no 13084 3466 3485 31.995687 331.790429 181.893058 2.259816124 -0.225133 32 58 16578 YER179W intron no 192 101 122 29.938168 291.817507 160.8778375 2.20649622 -0.012767 32 59 13742 MT_COB exon1 yes 7308 316 336 31.846268 329.173698 180.509983 2.256501225 -0.207503 32 60 11353 "rRNA(18S,5.8S,25S)" 25S yes 7956 3651 3667 15230.20973 5403.765241 10316.98748 4.013552904 1.13835 32 61 9929 RUF5-1 RUF5-1 yes 975 451 468 37.222006 319.733193 178.4775995 2.251583716 -0.091002 32 62 15424 YBL072C exon/intron no 408 41 58 36.784749 278.545344 157.6650465 2.197735423 0.264913 32 63 6134 snR39B snR39B yes 296 11 26 40.345711 326.738154 183.5419325 2.2637353 -0.142163 32 64 19245 YPL090C 3_exon no 494 461 475 58.703914 306.808707 182.7563105 2.261872382 0.112672 32 65 16006 YDL137W intron no 432 201 217 32.418498 287.809606 160.114052 2.204429448 0.095811 32 66 11104 "rRNA(18S,5.8S,25S)" 18S yes 7956 2406 2423 40.460245 296.40354 168.4318925 2.226424328 0.128308 32 67 15790 YDL029W intron/exon no 223 161 177 31.011551 271.978334 151.4949425 2.180398135 0.136545 32 68 6814 snR52 5_flank no 292 51.461168 305.385212 178.42319 2.2514513 0.087303 32 69 4733 snR4 3_flank no 386 29.770003 283.871918 156.8209605 2.19540411 0.016066 32 70 7229 snR65 5_flank no 300 28.030908 291.881654 159.956281 2.204001298 -0.114514 32 71 15586 YBR084C intron no 606 481 498 30.271479 296.408932 163.3402055 2.213093098 -0.029948 32 72 5109 snR11 snR11 yes 458 146 158 38.629162 280.344444 159.486803 2.202724752 0.26926 32 73 8466 snoRNA cluster 5 3_flank no 586 496 515 31.418214 297.367364 164.392789 2.215882764 0.002934 32 74 11034 "rRNA(18S,5.8S,25S)" 18S yes 7956 2056 2069 805.75169 727.599447 766.6755685 2.884611624 0.731428 32 75 7235 snR65 5_flank no 300 34.46896 279.448188 156.958574 2.195785044 0.214134 32 76 21570 copy of SH5385 no 425 38.636773 314.946526 176.7916495 2.247461748 -0.04545 32 77 1329 Ile3 IleTAT_ii tRNA/intron no 333 26 i5 30.469363 292.862124 161.6657435 2.208618004 -0.00098 32 78 1868 Leu9 LeuTAG_ii tRNA yes 301 53 68 34.770645 289.991938 162.3812915 2.210535991 0.142071 32 79 17370 YIL052C intron no 572 301 318 30.767223 297.973719 164.370471 2.2158238 -0.02268 32 80 1422 Leu1 LeuCAA_i 3_flank no 315 37.167229 303.618084 170.3926565 2.231450874 0.053363 32 81 17334 YIL018W intron no 500 81 99 28.78501 308.84037 168.81269 2.22740509 -0.15817 32 82 15537 YBR078W intron no 430 101 117 32.831485 288.288948 160.5602165 2.205637945 0.105965 32 83 17890 YLR048W intron no 459 321 338 30.475035 286.765515 158.620275 2.200358698 0.037947 32 84 2285 Phe2 PheGAA_ii tRNA yes 292 21 33 62.990796 305.992959 184.4918775 2.265977251 0.143321 32 85 2102 Lys4 LysTTT_ii 3_flank no 296 31.675165 319.675253 175.675209 2.244710479 -0.137373 32 86 12590 MT_15S 15S yes 1848 601 625 29.208106 357.540184 193.374145 2.286398406 -0.447594 32 87 15439 YBL072C intron/exon no 408 341 362 30.720059 278.404686 154.5623725 2.189103775 0.090773 32 88 221 Arg3 ArgCCG 5_flank no 272 39.940111 328.22265 184.0813805 2.265009863 -0.156037 32 89 5207 snR13 3_flank no 324 33.713679 309.290093 171.501886 2.2342689 -0.02993 32 90 3280 Thr2 ThrCGT tRNA yes 272 1 13 59.904398 307.917809 183.9111035 2.26460795 0.109535 32 91 14434 MT_21S 21S_rRNA3 yes 4639 721 737 42.456087 315.346141 178.901114 2.252613045 -0.037559 32 92 18514 YMR201C intron no 184 81 97 38.483509 316.854118 177.6688135 2.249611202 -0.062685 32 93 7749 snoRNA cluster1 intergenic/snR76 no 1574 541 559 38.362346 348.198262 193.280304 2.2861876 -0.323831 32 94 2729 Pro5 ProTGG_iv tRNA/intron no 303 27 i2 30.904472 267.509747 149.2071095 2.173789517 0.153231 32 95 8631 snR19 / U1 RNA U1/3_flank no 868 30.91766 284.078288 157.497974 2.197274972 0.070339 32 96 6733 snR49 3_flank no 365 42.110876 324.402793 183.2568345 2.26306018 -0.116389 32 97 18335 YML124C 5_exon no 398 21 37 85.861921 337.711884 211.7869025 2.325899099 0.043574 32 98 8884 LSR1 / U2 RNA U2 yes 1375 1061 1073 74.904728 301.449364 188.177046 2.274566647 0.248043 32 99 21371 Leu1_5 spliced yes 40 21 37 79.372752 304.68627 192.029511 2.283367976 0.24774 32 100 12554 MT_15S 5_flank no 1848 61 87 29.004639 282.027156 155.5158975 2.191774791 -0.015721 32 101 19003 YOR122C intron no 309 241 259 30.734709 266.357855 148.546282 2.171861786 0.150418 32 102 8849 LSR1 / U2 RNA U2 yes 1375 886 901 141.734924 388.860039 265.2974815 2.423733127 0.070764 32 103 14345 MT_VAR1 3_flank no 1467 1381 1393 35.963135 270.393146 153.1781405 2.185196793 0.319094 32 104 18615 YNL069C intron no 549 461 482 33.952086 332.582019 183.2670525 2.263084395 -0.209484 33 2 15236 MT_COX3 3_flank no 1010 961 987 29.429003 349.841036 189.6350195 2.277918541 -0.390676 33 3 13699 MT_Glu (and 5_flank processing site for COB) 5_flank no 368 16 42 29.473796 287.42281 158.448303 2.199887592 -0.016025 33 4 10122 RUF6 RUF6 yes 1251 456 472 33.769427 299.945558 166.8574925 2.222345713 0.046571 33 5 20531 YGR148C spliced yes 40 5 24 29.38868 313.902592 171.645636 2.234632766 -0.166431 33 6 3472 Tyr1 TyrGTA_i 5_flank no 289 37.803836 291.730998 164.767417 2.216871333 0.161926 33 7 20753 YJR021C spliced yes 40 17 33 41.825765 326.905452 184.3656085 2.265679911 -0.138437 33 8 19243 YPL090C intron no 494 421 442 28.872954 315.238938 172.055946 2.235669686 -0.19274 33 9 13538 MT_COX1 intronic no 13084 12271 12290 28.628939 285.330013 156.979476 2.195842875 -0.051483 33 10 17298 YHR141C intron/exon no 541 481 498 30.431017 283.826453 157.128735 2.196255614 0.050402 33 11 12023 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 7001 7018 34.243786 283.9893 159.116543 2.201715335 0.177612 33 12 19244 YPL090C intron/exon no 494 441 460 27.858716 302.943819 165.4012675 2.218538833 -0.173623 33 13 21399 Pro8 spliced yes 40 1 17 42.778386 275.914176 159.346281 2.202341932 0.333541 33 14 18105 YLR367W intron no 583 321 337 31.490214 281.563511 156.5268625 2.19458888 0.105871 33 15 10734 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 556 574 31.394595 299.298007 165.346301 2.218394484 -0.009767 33 16 7064 snR62 3_flank no 300 31.403997 297.127966 164.2659815 2.215547633 0.003944 33 17 849 Glu2 GluTTC_i tRNA yes 272 11 27 1750.642562 2648.868891 2199.755727 3.342374457 -0.350982 33 18 15052 MT_COX 2; ORF1 ORF1exon1 yes 2427 1381 1403 27.742493 308.451095 168.096794 2.225559431 -0.204109 33 19 12365 5S rRNA NTS2 no 1420 781 797 32.130285 286.314546 159.2224155 2.202004208 0.096075 33 20 9701 RUF4 RUF4 yes 988 281 301 28.404304 304.288773 166.3465385 2.221013768 -0.149387 33 21 205 Arg2 ArgACG_ii 3_flank no 273 30.855637 292.847675 161.851656 2.209117147 0.012265 33 22 21794 copy of SH14859 no 360 31.188462 314.067009 172.6277355 2.237110574 -0.105328 33 23 7262 snR65 snR65/3_flank no 300 31.424246 286.435586 158.929916 2.201205654 0.072095 33 24 12328 5S rRNA NTS2 no 1420 596 613 31.53853 291.43933 161.48893 2.208142757 0.044 33 25 14156 MT_COB intronic no 7308 6526 6551 29.394197 331.160365 180.277281 2.255940999 -0.264775 33 26 19677 SIR1 2.4 SIR1 2.4 yes 401 261 278 31.419418 294.627225 163.0233215 2.212249737 0.020018 33 27 20387 YFL034C-B spliced yes 40 13 29 35.483534 294.90232 165.192927 2.217991448 0.108978 33 28 21762 copy of SH13394 no 13084 33.156585 333.041852 183.0992185 2.262686491 -0.219679 33 29 1546 Leu4 LeuCAA_iv 5_flank no 314 30.885913 291.867893 161.376903 2.207841377 0.01946 33 30 11268 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3226 3243 58.071778 301.552533 179.8121555 2.254819047 0.154191 33 31 2293 Phe2 PheGAA_ii tRNA yes 292 42 54 96.594179 351.136783 223.865481 2.349987133 0.022152 33 32 16751 YGL076C intron no 559 441 460 32.886482 289.123583 161.0050325 2.206839451 0.10239 33 33 8569 snR19 / U1 RNA U1 yes 868 341 357 30.88682 262.73454 146.81068 2.16675765 0.176328 33 34 14430 MT_21S 21S_rRNA3 yes 4639 661 682 31.000007 317.17939 174.0896985 2.240773073 -0.129813 33 35 2416 Phe4 PheGAA_iv 3_flank no 291 74.836772 300.184119 187.5104455 2.273025466 0.258035 33 36 8245 snoRNA cluster4 5_flank no 638 11 31 33.327164 270.750568 152.038866 2.181954622 0.237174 33 37 9255 snR6 / U6 RNA 3_flank no 312 45.103037 308.014866 176.5589515 2.246889741 0.035577 33 38 14290 MT_VAR1 VAR1 yes 1467 556 583 29.169535 318.556779 173.863157 2.240207561 -0.201345 33 39 840 Glu2 GluTTC_i 5_flank no 272 31.252941 302.671847 166.962394 2.222618663 -0.035127 33 40 12008 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6926 6946 29.045569 289.542788 159.2941785 2.202199905 -0.048551 33 41 7869 snoRNA cluster1 snR73 yes 1574 1141 1157 37.322544 288.31863 162.820587 2.211709316 0.185698 33 42 21675 copy of SH9838 no 975 30.814666 266.961967 148.8883165 2.172860619 0.151438 33 43 14094 MT_COB bi4 no 7308 5596 5617 28.529609 321.594556 175.0620825 2.24319209 -0.241983 33 44 19896 snR17A spliced yes 40 13 30 36.589104 342.201449 189.3952765 2.277369144 -0.282322 33 45 13079 MT_COX1 ai3 no 13084 5386 5402 34.314876 302.496971 168.4059235 2.226357363 0.032273 33 46 18091 YLR367W exon/intron no 583 41 58 34.150108 300.983026 167.566567 2.224187372 0.04268 33 47 6704 snR49 snR49 yes 365 46 62 31.995777 332.213195 182.104486 2.260320644 -0.228278 33 48 17155 YHR012W intron/exon no 219 161 177 30.90522 317.532335 174.2187775 2.241094962 -0.135058 33 49 14413 MT_21S 21S_rRNA3 yes 4639 406 425 31.86384 289.948669 160.9062545 2.206572926 0.064157 33 50 15114 MT_COX 2; ORF1 ORF3exon3 yes 2427 2311 2337 29.785502 296.237812 163.011657 2.212218662 -0.045785 33 51 693 Gln3 GlnTTG_ii 5_flank/tRNA no 272 46.949405 250.180653 148.565029 2.171916592 0.615595 33 52 12310 5S rRNA NTS2 no 1420 506 522 39.752183 295.995173 167.873678 2.224982606 0.130549 33 53 19213 YPL081W intron no 601 421 439 35.64717 328.95569 182.30143 2.260790075 -0.174402 33 54 1111 Gly4 GlyTCC tRNA yes 272 31 43 45.749484 285.164556 165.45702 2.218685198 0.249036 33 55 9161 snR7 U5 RNA U5 yes 415 76 93 29.650525 291.440375 160.54545 2.205598002 -0.025221 33 56 5394 snR31 snR31 yes 425 36 52 35.832742 268.775614 152.304178 2.182711817 0.326348 33 57 10784 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 806 822 661.269699 587.126874 624.1982865 2.795322572 0.859046 33 58 20708 YJL024C spliced yes 40 13 34 29.926045 302.879741 166.402893 2.221160872 -0.081694 33 59 17465 YIL148W intron no 534 401 419 33.924733 289.55173 161.7382315 2.20881269 0.132123 33 60 3297 Thr2 ThrCGT 3_flank no 272 35.705933 343.546204 189.6260685 2.277898041 -0.295511 33 61 20712 YJL041W spliced yes 40 5 24 29.331447 303.432626 166.3820365 2.221106436 -0.106009 33 62 17693 YKL006W intron no 498 361 375 107.649019 297.039174 202.3440965 2.306090538 0.469825 33 63 18434 YMR142C intron no 502 181 195 51.258985 283.191029 167.225007 2.223301223 0.285515 33 64 18945 YOL127W intron no 514 81 99 53.954523 380.08446 217.0194915 2.336498742 -0.4602 33 65 8959 snR17a / U3a U3a yes 690 81 97 30.568055 293.172156 161.8701055 2.20916665 0.000448 33 66 6522 snR46 snR46 yes 397 101 118 30.775364 336.651589 183.7134765 2.264141016 -0.27718 33 67 19138 YPL075W intron no 851 281 303 31.099797 334.658015 182.878906 2.262163615 -0.258159 33 68 10508 RUF8 RUF8 yes 1151 466 487 29.472331 328.927337 179.199834 2.253337603 -0.249545 33 69 2664 Pro4 ProTGG_iii 5_flank/tRNA no 302 31.820093 285.846024 158.8330585 2.200940899 0.08896 33 70 21765 copy of SH13600 no 347 30.047072 313.260697 171.6538845 2.234653636 -0.139527 33 71 18120 YLR388W exon/intron no 258 41 58 30.192659 297.210936 163.7017975 2.214053448 -0.037646 33 72 21445 copy of SH42 no 273 36.40577 261.041607 148.7236885 2.172380148 0.396672 33 73 2333 Phe3 PheGAA_iii 5_flank/tRNA no 291 32.278514 333.035625 182.6570695 2.261636486 -0.230746 33 74 4972 snR9 3_flank no 387 69.454515 297.460665 183.45759 2.263535684 0.24969 33 75 5210 snR30 5_flank no 801 30.217613 321.383993 175.800803 2.245020854 -0.180753 33 76 15547 YBR078W intron no 430 301 317 40.613642 301.000923 170.8072825 2.232506383 0.085649 33 77 9639 RUF4 5_flank no 988 38.759643 284.11111 161.4353765 2.207998711 0.237673 33 78 6139 snR39B snR39B yes 296 36 54 34.857825 332.09662 183.4772225 2.263582157 -0.202999 33 79 12594 MT_15S 15S yes 1848 661 689 28.807324 319.501569 174.1544465 2.240934567 -0.219846 33 80 10468 RUF8 RUF8 yes 1151 266 287 28.939893 324.230845 176.585369 2.246954717 -0.242104 33 81 3059 Ser3 SerCGA 5_flank/tRNA no 301 35.276246 316.194673 175.7354595 2.244859401 -0.065733 33 82 13196 MT_COX1 exon4 yes 13084 7141 7160 30.914433 279.815265 155.364849 2.191352767 0.093844 33 83 12268 5S rRNA NTS2 no 1420 296 313 43.115105 307.572047 175.343576 2.243889859 0.033103 33 84 551 Cys1 CysGCA tRNA yes 272 56 69 36.360664 270.064553 153.2126085 2.185294507 0.332812 33 85 3262 Thr2 ThrCGT 5_flank no 272 31.746025 318.482728 175.1143765 2.243321802 -0.127212 33 86 7175 snR64 5_flank no 301 35.194625 287.312892 161.2537585 2.207509846 0.170027 33 87 3205 Ser5 SerTGA 3_flank no 282 46.398625 307.369581 176.884103 2.247688804 0.045363 33 88 6544 snR46 3_flank no 397 30.259219 282.758013 156.508616 2.194538251 0.046627 33 89 12574 MT_15S 15S yes 1848 361 380 31.76113 326.49121 179.12617 2.25315904 -0.18839 33 90 21469 copy of SH1239 no 274 35.176084 275.770837 155.4734605 2.191656265 0.259729 33 91 21216 YOR122C spliced yes 40 9 25 38.615969 293.609237 166.112603 2.220402584 0.150514 33 92 14716 MT_Cys; His 5_flank no 456 61 85 27.258692 359.367097 193.3128945 2.286260824 -0.494035 33 93 4058 SRP SRP yes 875 181 200 29.012094 308.01378 168.512937 2.226633248 -0.14503 33 94 3459 Trp1 TrpCCA 3_flank no 306 30.826947 316.843168 173.8350575 2.240137366 -0.133706 33 95 4755 snR5 5_flank no 404 30.849697 287.88576 159.3677285 2.202400383 0.043528 33 96 6654 snR48 snR48/3_flank no 313 29.05346 309.127775 169.0906175 2.22811951 -0.150189 33 97 3555 Tyr2 TyrGTA_ii intron/tRNA no 289 i7 47 30.962097 282.988146 156.9751215 2.195830828 0.078917 33 98 6649 snR48 snR48 yes 313 71 87 32.857819 244.78721 138.8225145 2.142459907 0.366663 33 99 14590 MT_21S Sce1 no 4639 3061 3083 29.139044 345.255248 187.197146 2.272299223 -0.362167 33 100 1761 Leu7 LeuTAA 3_flank no 284 28.167222 284.057373 156.1122975 2.193437115 -0.070793 33 101 5867 snR35 snR35 yes 740 521 540 60.778739 363.367329 212.073034 2.32648545 -0.300275 33 102 4565 U3b (snR17b) U3b yes 662 381 395 34.466302 253.304151 143.8852265 2.158016205 0.394904 33 103 5353 snR30 3_flank no 801 32.483188 293.38264 162.932914 2.212008825 0.062581 33 104 6036 snR37 snR37 yes 586 96 111 1196.745212 1149.62354 1173.184376 3.069366271 0.472497 34 2 19847 Negative Control no 60 NA #VALUE! 44.306765 373.374267 208.840516 2.319814758 -0.479121 34 3 5433 snR31 3_flank no 425 33.592659 294.310474 163.9515665 2.214715571 0.091269 34 4 7480 snR71 snR71 yes 290 16 30 95.796837 357.636128 226.7164825 2.355483095 -0.024702 34 5 20013 YBR084C-A spliced yes 40 9 26 33.633117 293.849887 163.741502 2.21415877 0.095638 34 6 20269 YDR424C spliced yes 40 21 37 35.677021 287.344405 161.510713 2.208201334 0.175392 34 7 12210 5S rRNA NTS2 no 1420 6 21 108.5728 407.2964 257.9346 2.411509603 -0.228683 34 8 19980 YBL091C-A spliced yes 40 1 17 39.475581 301.366986 170.4212835 2.231523832 0.079658 34 9 21320 YPL249C-A spliced yes 40 21 37 32.865612 301.303192 167.084402 2.222935909 0.024178 34 10 20794 YKL156W spliced yes 40 13 30 30.498343 279.820687 155.159515 2.190778413 0.072763 34 11 11056 "rRNA(18S,5.8S,25S)" 18S yes 7956 2166 2182 48.752022 298.133751 173.4428865 2.239156493 0.13746 34 12 18834 YNL302C intron no 651 501 520 29.974839 309.993679 169.984259 2.230408706 -0.122738 34 13 17500 YJL041W 3_exon no 218 181 198 66.417044 341.339562 203.878303 2.30937101 -0.108859 34 14 10870 "rRNA(18S,5.8S,25S)" 18S yes 7956 1236 1252 45902.82771 26492.61754 36197.72263 4.558681248 -0.155058 34 15 15169 MT_Val 3_flank no 276 211 239 38.674343 316.731446 177.7028945 2.249694502 -0.061152 34 16 2583 Pro2 ProTGG_i 3_flank no 303 31.693324 274.382776 153.03805 2.184799423 0.158613 34 17 19487 YPT1 YPT1 yes 402 41 53 60.450822 307.062872 183.756847 2.26424353 0.119806 34 18 14012 MT_COB intronic no 7308 4366 4387 30.144473 303.463615 166.804044 2.222206575 -0.077646 34 19 21787 copy of SH14442 no 4639 30.514128 301.083294 165.798711 2.21958115 -0.05042 34 20 12431 5S rRNA NTS2 no 1420 1111 1128 43.543172 312.530648 178.03691 2.250510048 -0.009358 34 21 19760 Negative Control no 60 NA #VALUE! 33.427886 305.165951 169.2969185 2.228649053 -0.00028 34 22 7617 snR189 snR189 yes 389 156 175 29.462058 286.489867 157.9759625 2.19859101 -0.012315 34 23 15618 YBR181C intron no 452 141 162 31.777377 329.572522 180.6749495 2.256897942 -0.211392 34 24 3735 Val4 ValTAC 5_flank no 274 29.653682 298.108467 163.8810745 2.214528803 -0.062007 34 25 18984 YOR096W intron no 501 361 376 36.012838 286.281557 161.1471975 2.207222757 0.18843 34 26 12718 MT_ORF 8 3_flank no 491 436 462 29.381467 313.868036 171.6247515 2.234579921 -0.166485 34 27 14528 MT_21S 21S_rRNA3 yes 4639 2131 2148 33.396149 289.041187 161.218668 2.207415329 0.118974 34 28 9700 RUF4 RUF4 yes 988 276 297 33.142944 317.264748 175.203846 2.243543635 -0.099912 34 29 14403 MT_21S 21S_rRNA3 yes 4639 256 278 30.848567 293.601572 162.2250695 2.210117969 0.007292 34 30 16540 YER131W 3_exon no 461 421 436 86.264679 320.965829 203.615254 2.30881031 0.165372 34 31 10752 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 646 664 34.879487 304.536373 169.70793 2.229702136 0.022425 34 32 8752 LSR1 / U2 RNA U2 yes 1375 401 413 34.935368 292.815679 163.8755235 2.214514092 0.12008 34 33 1099 Gly4 GlyTCC 5_flank no 272 30.857667 284.955219 157.906443 2.198399851 0.062636 34 34 20303 YER003C spliced yes 40 5 21 52.088627 318.01996 185.0542935 2.267299166 -0.015713 34 35 12045 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7111 7128 33.200824 294.098728 163.649776 2.213915415 0.080911 34 36 3371 Thr4 ThrTGT_ii 5_flank no 272 31.179813 310.143234 170.6615235 2.232135618 -0.08247 34 37 6736 snR49 3_flank no 365 33.351105 281.41419 157.3826475 2.196956847 0.1668 34 38 21747 copy of SH12762 no 13084 73.047587 348.398341 210.722964 2.323711866 -0.114263 34 39 15199 MT_COX3 cox3 no 1010 406 422 37.558167 306.655907 172.107037 2.235798628 0.026501 34 40 9795 RUF4 RUF4 yes 988 751 768 29.005071 290.826931 159.916001 2.203891921 -0.056612 34 41 9252 snR6 / U6 RNA 3_flank no 312 30.978477 294.191988 162.5852325 2.211081096 0.007982 34 42 11195 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2861 2879 30.804595 277.541024 154.1728095 2.188007787 0.09918 34 43 7653 snoRNA cluster1 5_flank no 1574 61 80 29.568519 290.921302 160.2449105 2.204784245 -0.02715 34 44 5934 snR36 snR36 yes 555 126 140 63.613711 316.455365 190.034538 2.278832539 0.061825 34 45 21897 copy of SH19002 no 309 31.232346 302.754024 166.993185 2.222698748 -0.036315 34 46 9102 snR14 / U4 RNA U4 yes 360 126 142 36.164 347.439105 191.8015525 2.282852118 -0.32583 34 47 15202 MT_COX3 cox3 no 1010 451 468 33.966545 296.158996 165.0627705 2.21764913 0.080378 34 48 344 Arg5 ArgTCT tRNA yes 272 56 68 39.926411 293.131303 166.528857 2.221489501 0.158113 34 49 6837 snR52 snR52/3_flank no 292 29.690096 285.757293 157.7236945 2.197896941 0.003075 34 50 18778 YNL265C intron no 205 101 118 29.585104 254.826175 142.2056395 2.15291682 0.145502 34 51 12009 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6931 6949 29.474198 229.539384 129.506791 2.112292542 0.254981 34 52 19388 YPR043W intron no 503 341 358 32.366134 329.894962 181.130548 2.257991701 -0.206207 34 53 17443 YIL133C 3_exon no 390 341 358 86.272399 380.729902 233.5011505 2.368289025 -0.230419 34 54 3155 Ser4 SerGCT 3_flank no 301 31.314013 304.946496 168.1302545 2.22564587 -0.046874 34 55 19695 Negative Control no 60 NA #VALUE! 43.470292 266.907163 155.1887275 2.190860172 0.427739 34 56 2438 Phe5 PheGAA_v 5_flank no 291 57.954113 346.75478 202.3544465 2.306112752 -0.202624 34 57 14172 MT_COB intronic no 7308 6766 6788 29.787541 338.321104 184.0543225 2.264946021 -0.302914 34 58 15198 MT_COX3 cox3 no 1010 391 410 29.910268 268.163164 149.036716 2.173293272 0.099175 34 59 3808 RNaseP RNaseP yes 569 6 22 33.961363 269.583816 151.7725895 2.181193344 0.26481 34 60 18232 YML026C intron no 501 241 262 29.709573 316.518436 173.1140045 2.238332203 -0.170371 34 61 7782 snoRNA cluster1 intergenic no 1574 706 727 29.402923 309.001837 169.20238 2.228406468 -0.136954 34 62 1460 Leu2 LeuCAA_ii tRNA yes 314 38 e21 81.67556 304.82173 193.248645 2.286116457 0.260589 34 63 14268 MT_VAR1 VAR1 yes 1467 226 252 26.844336 296.792358 161.818347 2.20902776 -0.203936 34 64 15834 YDL075W intron no 521 121 140 32.566347 357.776704 195.1715255 2.290416457 -0.41732 34 65 18735 YNL162W 5_exon no 612 21 39 40.433172 281.157108 160.79514 2.206272918 0.275798 34 66 11646 "rRNA(18S,5.8S,25S)" 25S yes 7956 5116 5134 34.792566 284.488682 159.640624 2.203143417 0.189682 34 67 788 Glu1 GluCTC 5_flank no 272 31.173778 291.718249 161.4460135 2.208027326 0.030091 34 68 11833 "rRNA(18S,5.8S,25S)" 25S yes 7956 6051 6064 37696.51177 9283.856614 23490.18419 4.370886422 1.344585 34 69 4700 snR4 snR4 yes 386 36 53 35.87643 292.629037 164.2527335 2.215512606 0.132662 34 70 5649 snR34 snR34 yes 750 166 188 38.163479 316.252977 177.208228 2.248483883 -0.058142 34 71 15807 YDL061C intron no 509 281 300 30.101867 313.226947 171.664407 2.234680258 -0.137426 34 72 2185 Met2 MetCAT_ii tRNA yes 272 56 68 84.539415 299.879432 192.2094235 2.283774676 0.31657 34 73 9503 RUF3 5_flank no 631 44.39966 277.031441 160.7155505 2.2060579 0.325646 34 74 17316 YHR203C intron/exon no 369 301 322 28.001298 303.153134 165.577216 2.219000576 -0.166611 34 75 17204 YHR039C 5_exon no 262 21 37 50.578206 324.322959 187.4505825 2.272886794 -0.075249 34 76 16717 YGL031C intron no 556 481 498 36.358363 282.855009 159.606686 2.20305108 0.222142 34 77 8561 snR19 / U1 RNA U1 yes 868 301 318 36.617495 293.197243 164.907369 2.217240063 0.136334 34 78 21502 copy of SH2552 no 303 97.399344 323.489495 210.4444195 2.323137414 0.214912 34 79 21279 YPL129W spliced yes 40 13 30 28.838024 341.172158 185.005091 2.26718368 -0.33956 34 80 11810 "rRNA(18S,5.8S,25S)" 25S yes 7956 5936 5956 28.996157 273.506501 151.251329 2.179699199 0.024676 34 81 9918 RUF5-1 RUF5-1 yes 975 396 413 31.132526 283.473799 157.3031625 2.196737454 0.081493 34 82 14705 MT_Thr2 tRNA yes 276 151 167 33.092391 278.529783 155.811087 2.192598357 0.177637 34 83 3433 Trp1 TrpCCA 5_flank/tRNA no 306 116.877853 367.869648 242.3737505 2.384485583 0.04522 34 84 8828 LSR1 / U2 RNA U2 yes 1375 781 802 32.303919 301.616663 166.960291 2.222613193 0.00584 34 85 17591 YJL191W intron no 508 341 361 29.749171 323.034288 176.3917295 2.246478218 -0.206497 34 86 16421 YER056C 3_exon no 497 481 493 68.198232 344.5291 206.363666 2.314633234 -0.120701 34 87 7169 snR64 5_flank no 301 34.58533 286.650474 160.617902 2.205793949 0.1685 34 88 16385 YER007C intron/exon no 203 141 158 30.197599 296.449321 163.32346 2.213048572 -0.032751 34 89 14526 MT_21S 21S_rRNA3 yes 4639 2101 2122 29.778573 314.478643 172.128608 2.235853057 -0.156045 34 90 21290 YPL175W spliced yes 40 5 21 42.572247 312.269959 177.421103 2.249005275 -0.010281 34 91 57 Ala2 AlaTGC 5_flank no 273 34.72998 280.770724 157.750352 2.197970337 0.213319 34 92 5609 snR34 5_flank no 750 32.653473 294.769933 163.711703 2.214079726 0.059355 34 93 18736 YNL162W exon/intron no 612 41 60 32.522555 343.513119 188.017837 2.274199052 -0.304179 34 94 16012 YDL137W intron no 432 321 337 49.06319 308.386257 178.7247235 2.252184634 0.049769 34 95 7878 snoRNA cluster1 snR73 yes 1574 1186 1206 28.818209 280.686865 154.752537 2.189637778 -0.019397 34 96 11042 "rRNA(18S,5.8S,25S)" 18S yes 7956 2096 2109 467.291605 726.85726 597.0744325 2.776028475 0.0861 34 97 9465 RUF2 RUF2 yes 468 166 183 36.329938 307.792224 172.061081 2.235682647 0.013014 34 98 14045 MT_COB bi4 no 7308 4861 4881 29.004177 257.861044 143.4326105 2.156647903 0.097197 34 99 12956 MT_COX1 ai2 no 13084 3541 3562 29.035489 318.394936 173.7152125 2.239837852 -0.205219 34 100 17834 YKR094C intron no 468 121 139 38.310957 365.162643 201.7368 2.304785128 -0.454507 34 101 20618 YHR097C spliced yes 40 13 35 28.992364 285.841133 157.4167485 2.197050938 -0.034266 34 102 12494 MT_tRNA Pro 5_flank no 272 61 89 30.781071 314.421335 172.601203 2.237043818 -0.121134 34 103 13733 MT_COB exon1 yes 7308 181 200 30.700864 318.591037 174.6459505 2.24215852 -0.148115 34 104 10346 RUF7 RUF7 yes 700 341 357 34.334314 288.813726 161.57402 2.20837153 0.146904 35 2 1893 Lys1 LysCTT_i 5_flank no 272 56.965513 513.091286 285.0283995 2.454888134 -1.158968 35 3 18656 YNL112W intron no 1102 301 320 31.269721 350.433312 190.8515165 2.280695615 -0.369736 35 4 14695 MT_Thr2 5_flank no 276 1 25 27.129273 286.860352 156.9948125 2.195885302 -0.142206 35 5 14569 MT_21S 21S_rRNA3 yes 4639 2746 2763 579.147039 796.434716 687.7908775 2.837456411 0.183051 35 6 3190 Ser5 SerTGA tRNA/3_flank no 282 62 74 75.582917 338.59117 207.0870435 2.316152928 -0.029167 35 7 210 Arg3 ArgCCG 5_flank no 272 35.554183 319.266667 177.410425 2.248979136 -0.091108 35 8 573 Gln1 GlnCTG 5_flank no 272 28.99313 281.637444 155.315287 2.191214204 -0.014497 35 9 6281 snR42 snR42 yes 551 186 203 56.10615 368.66549 212.38582 2.327125518 -0.369115 35 10 17177 YHR021C intron no 650 121 138 34.732554 320.666565 177.6995595 2.249686351 -0.106872 35 11 16084 YDR025W intron no 439 221 242 30.31498 301.611082 165.963031 2.220011358 -0.060482 35 12 16436 YER074W intron no 566 281 300 30.084788 320.80691 175.445849 2.244143097 -0.182044 35 13 6058 snR37 snR37 yes 586 206 223 33.975414 303.714693 168.8450535 2.227488342 0.018228 35 14 17016 YGR148C intron no 479 241 257 37.927524 302.457742 170.192633 2.230940757 0.065911 35 15 8337 snoRNA cluster4 snR53 yes 638 471 488 33.869254 304.951343 169.4102985 2.228939808 0.00689 35 16 20742 YJL191W spliced yes 40 25 39 31.95532 318.647359 175.3013395 2.243785235 -0.125768 35 17 6497 snR46 5_flank no 397 32.185648 310.019729 171.1026885 2.233256834 -0.054958 35 18 12127 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7521 7538 38.739478 349.871942 194.30571 2.288485563 -0.335591 35 19 18845 YNL312W intron no 208 81 97 29.802938 263.37891 146.590924 2.166107082 0.117561 35 20 8232 snoRNA cluster 3; 3_flank no 743 671 687 39.759268 310.626852 175.19306 2.243516898 -0.004247 35 21 21475 copy of SH1442 no 314 38.074922 311.24735 174.661136 2.24219628 -0.013776 35 22 13004 MT_COX1 ai2 no 13084 4261 4283 29.732245 314.611485 172.171865 2.235962184 -0.158448 35 23 3744 Val4 ValTAC 5_flank no 274 32.008687 301.531138 166.7699125 2.222117701 -0.003225 35 24 15668 YBR191W 5_exon no 488 1 18 38.478511 320.570521 179.524516 2.254123765 -0.095278 35 25 2065 Lys4 LysTTT_ii 5_flank/tRNA no 296 36.109148 306.835589 171.4723685 2.234194147 0.018183 35 26 17587 YJL191W intron no 508 261 278 33.674358 308.495651 171.0850045 2.233211946 -0.024057 35 27 12298 5S rRNA NTS2 no 1420 446 460 46.121926 301.888171 174.0050485 2.240561849 0.093868 35 28 17746 YKL157W intron no 483 61 80 37.29019 320.210323 178.7502565 2.252246674 -0.095001 35 29 2388 Phe4 PheGAA_iv 5_flank/tRNA no 291 37.048087 335.070516 186.0593015 2.269651386 -0.222344 35 30 10203 RUF6 RUF6 yes 1251 861 885 30.665603 311.829091 171.247347 2.233623852 -0.109816 35 31 7076 snR62 3_flank no 300 34.807036 279.919358 157.363197 2.19690317 0.221225 35 32 13796 MT_COB intronic no 7308 1126 1150 28.623066 327.265339 177.9442025 2.250283843 -0.270751 35 33 21508 copy of SH2800 no 302 53.918856 279.152449 166.5356525 2.221507223 0.335856 35 34 11273 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3251 3269 30.933787 298.11622 164.5250035 2.216231909 -0.017923 35 35 12949 MT_COX1 ai2 no 13084 3436 3459 28.939118 328.753004 178.846061 2.252479379 -0.267634 35 36 5678 snR34 snR34 yes 750 311 329 37.463987 323.460832 180.4624095 2.256386752 -0.122797 35 37 21904 copy of SH19399 no 186 37.509985 285.520325 161.515155 2.208213279 0.211875 35 38 14601 MT_21S Sce1 no 4639 3226 3245 38.568174 316.387642 177.477908 2.249144301 -0.058368 35 39 8416 snoRNA cluster 5 snR190 yes 586 246 262 43.820081 297.091648 170.4558645 2.231611948 0.130508 35 40 339 Arg5 ArgTCT tRNA yes 272 31 50 28.941803 299.510643 164.226223 2.215442505 -0.099183 35 41 13186 MT_COX1 exon4 yes 13084 6991 7011 30.933188 284.386261 157.6597245 2.197720763 0.068868 35 42 6363 snR43 snR43 yes 409 56 73 45.444959 317.124123 181.284541 2.258360771 -0.042802 35 43 5047 snR10 3_flank no 445 34.759994 335.420357 185.0901755 2.267383367 -0.231081 35 44 9930 RUF5-1 RUF5-1 yes 975 456 472 36.604546 355.74267 196.173608 2.29264058 -0.389308 35 45 7407 snR69 5_flank no 301 32.260418 258.022584 145.141501 2.16179161 0.268033 35 46 8629 snR19 / U1 RNA U1 yes 868 641 660 30.024901 316.593217 173.309059 2.238821264 -0.159781 35 47 2418 Phe4 PheGAA_iv 3_flank no 291 35.945747 308.463581 172.204664 2.23604491 0.003227 35 48 5018 snR10 snR10 yes 445 121 137 480.744213 648.021958 564.3830855 2.75157399 0.316912 35 49 9996 RUF5-1 3_flank no 975 47.697067 338.567723 193.132395 2.285855126 -0.203646 35 50 6962 snR58 3_flank no 296 29.408523 266.846635 148.127579 2.170635925 0.079443 35 51 457 Asp1 AspGTC_i 3_flank no 271 31.244896 233.680737 132.4628165 2.122093985 0.338745 35 52 19539 CBP1 1.2 CBP1 1.2 yes 401 281 298 35.074525 306.745171 170.909848 2.232767088 0.006874 35 53 1555 Leu4 LeuCAA_iv 5_flank no 314 29.0663 318.343827 173.7050635 2.239812478 -0.203816 35 54 19705 Negative Control no 60 NA #VALUE! 37.026272 286.559741 161.7930065 2.208959745 0.197521 35 55 4620 snR3 snR3 yes 395 16 30 85.125274 308.155706 196.64049 2.293672948 0.254623 35 56 699 Gln3 GlnTTG_ii tRNA yes 272 26 42 39.527369 271.51707 155.5222195 2.191792446 0.357845 35 57 13119 MT_COX1 ai3 no 13084 5986 6006 31.751905 326.788645 179.270275 2.253508285 -0.19076 35 58 13559 MT_COX1 exon6 yes 13084 12586 12608 31.934624 308.386751 170.1606875 2.230859232 -0.047036 35 59 1592 Leu4 LeuCAA_iv 3_flank no 314 88.037998 293.203051 190.6205245 2.28016966 0.39031 35 60 20087 YDL012C spliced yes 40 1 15 149.25937 343.617176 246.438273 2.391708157 0.372118 35 61 18925 YOL121C intron no 490 161 178 47.558593 319.854304 183.7064485 2.264124401 -0.054266 35 62 8319 snoRNA cluster4 intergenic no 638 381 402 29.133714 297.033419 163.0835665 2.212410201 -0.077855 35 63 16165 YDR139C 5_exon no 173 21 39 40.671975 300.424756 170.5483655 2.231847562 0.091133 35 64 20669 YIL069C spliced yes 40 13 30 42.460909 348.561937 195.511423 2.291172137 -0.309003 35 65 7484 snR71 snR71 yes 290 36 57 29.773738 293.05836 161.416049 2.207946713 -0.02633 35 66 2062 Lys4 LysTTT_ii 5_flank no 296 36.855994 360.325337 198.5906655 2.297958831 -0.423443 35 67 1539 Leu3 LeuCAA_iii 3_flank no 314 35.210474 384.244753 209.7276135 2.321655615 -0.606245 35 68 6537 snR46 snR46 yes 397 176 194 35.565796 288.708633 162.1372145 2.209882708 0.162394 35 69 6212 snR40 3_flank no 297 31.821318 287.186714 159.504016 2.202771622 0.080385 35 70 5638 snR34 snR34 yes 750 111 128 60.660434 337.867441 199.2639375 2.299428708 -0.120685 35 71 19708 Negative Control no 60 NA #VALUE! 34.106351 299.757449 166.9319 2.222539337 0.052232 35 72 15383 YBL027W intron/exon no 484 421 437 54.575069 311.90071 183.2378895 2.263015281 0.04842 35 73 15680 YBR191W intron no 488 241 255 88.090094 346.258565 217.1743295 2.336808489 -0.000657 35 74 4204 telomerase RNA telomerase yes 1501 56 77 39.057509 311.834951 175.44623 2.244144041 -0.016719 35 75 7713 snoRNA cluster1 snR77 yes 1574 361 377 386.351702 419.150491 402.7510965 2.605036731 0.841091 35 76 13335 MT_COX1 ai5a no 13084 9226 9247 36.209335 319.658093 177.933714 2.250258244 -0.092864 35 77 19922 YAL030W spliced yes 40 17 34 34.424333 304.095086 169.2597095 2.228553591 0.02057 35 78 6026 snR37 snR37 yes 586 46 65 32.665077 305.952667 169.308872 2.228679716 -0.016201 35 79 10090 RUF6 RUF6 yes 1251 296 313 28.765111 318.652488 173.7087995 2.239821819 -0.216477 35 80 9904 RUF5-1 RUF5-1 yes 975 326 345 31.04068 309.394049 170.2173645 2.231003862 -0.082688 35 81 15535 YBR078W intron no 430 61 80 35.302849 313.155358 174.2291035 2.241120702 -0.041552 35 82 11164 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2706 2728 33.050947 306.995122 170.0230345 2.230507763 -0.019745 35 83 17285 YHR141C intron no 541 221 240 30.651176 288.073923 159.3625495 2.202386269 0.035583 35 84 5795 snR35 snR35 yes 740 161 182 32.270284 307.702567 169.9864255 2.230414242 -0.03533 35 85 9686 RUF4 RUF4 yes 988 206 220 165.875012 422.138045 294.0065285 2.468356974 0.030936 35 86 12968 MT_COX1 ai2 no 13084 3721 3738 31.154648 288.025704 159.590176 2.203006154 0.052904 35 87 12638 MT_15S 15S yes 1848 1321 1340 32.549778 332.587113 182.5684455 2.261425718 -0.22395 35 88 8150 snoRNA cluster 3; intergenic no 743 261 278 37.768974 307.124518 172.446746 2.236655004 0.022746 35 89 18804 YNL301C intron no 532 421 439 37.216685 306.692377 171.954531 2.235413624 0.025335 35 90 17110 YHR001W intron no 163 81 100 31.152615 302.173975 166.663295 2.221839964 -0.035454 35 91 12639 MT_15S 15S yes 1848 1336 1353 28.991773 291.139898 160.0658355 2.204298646 -0.058757 35 92 6336 snR43 5_flank no 409 39.775694 305.744146 172.75992 2.237442994 0.040059 35 93 5826 snR35 snR35 yes 740 316 333 40.490174 321.512703 181.0014385 2.257682026 -0.097432 35 94 912 Glu3 GluTTC_ii tRNA/3_flank no 272 32.184749 304.814212 168.4994805 2.226598566 -0.017435 35 95 6166 snR39B 3_flank no 296 44.9592 296.79884 170.87902 2.232688745 0.136868 35 96 222 Arg3 ArgCCG 5_flank no 272 35.881919 295.516247 165.699083 2.219320105 0.108462 35 97 15122 MT_Phe 5_flank no 265 16 42 30.486885 292.633511 161.560198 2.208334377 0.001058 35 98 8781 LSR1 / U2 RNA U2 yes 1375 546 560 72.114144 345.475611 208.7948775 2.31971984 -0.100311 35 99 6071 snR37 snR37 yes 586 271 287 32.463651 292.545074 162.5043625 2.210865024 0.067217 35 100 751 Gln4 GlnTTG_iii tRNA yes 272 26 42 30.65928 293.210148 161.934714 2.209339959 0.003321 35 101 13177 MT_COX1 exon4 yes 13084 6856 6873 30.665509 281.411481 156.038495 2.193231753 0.073707 35 102 11662 "rRNA(18S,5.8S,25S)" 25S yes 7956 5196 5209 141.099571 320.01948 230.5595255 2.36278307 0.482507 35 103 13540 MT_COX1 intronic no 13084 12301 12322 30.62187 320.440366 175.531118 2.244354119 -0.161462 35 104 9179 snR7 U5 RNA U5 yes 415 166 186 34.300427 314.981368 174.6408975 2.242145955 -0.067847 36 2 9281 RUF1 5_flank no 750 30.881523 374.79382 202.8376715 2.307148616 -0.552003 36 3 2920 Pro8 ProTGG_vii 3_flank no 305 33.279388 343.654909 188.4671485 2.27523566 -0.302821 36 4 6505 snR46 snR46 yes 397 16 32 33.480759 269.984382 151.7325705 2.181078815 0.247193 36 5 21083 YMR292W spliced yes 40 9 26 33.59221 320.496972 177.044591 2.248082663 -0.119387 36 6 6431 snR45 snR45 yes 372 1 18 46.481099 307.30666 176.8938795 2.247712807 0.046177 36 7 21157 YNL301C spliced yes 40 1 18 35.63431 277.791643 156.7129765 2.195104959 0.258452 36 8 17014 YGR148C intron no 479 201 217 35.431123 313.682051 174.556587 2.241936242 -0.044203 36 9 5727 snR34 3_flank no 750 35.160837 284.731296 159.9460665 2.203973564 0.191935 36 10 778 Glu1 GluCTC 5_flank no 272 69.501491 346.054361 207.777926 2.317599407 -0.122282 36 11 13317 MT_COX1 ai5a no 13084 8956 8980 32.502966 321.81481 177.158888 2.248362946 -0.143176 36 12 16900 YGL226C intron no 249 161 175 46.677156 318.564074 182.620615 2.261549801 -0.048191 36 13 770 Gln4 GlnTTG_iii 3_flank no 272 119.572692 536.987432 328.280062 2.516244507 -0.736912 36 14 14061 MT_COB bi4 no 7308 5101 5120 32.016353 318.230273 175.123313 2.243343965 -0.121741 36 15 15954 YDL130W intron no 401 61 78 36.109406 335.447009 185.7782075 2.268994768 -0.227825 36 16 7522 snR79 5_flank no 284 30.114363 266.812879 148.463621 2.171620049 0.116463 36 17 8424 snoRNA cluster 5 snR190/intergenic no 586 286 303 32.401796 271.762031 152.0819135 2.182077568 0.200905 36 18 7962 snoRNA cluster 2 5_flank no 739 46 60 53.671808 313.386556 183.529182 2.263705129 0.031165 36 19 20095 YDL029W spliced yes 40 5 22 35.2832 304.344401 169.8138005 2.229972982 0.028748 36 20 4661 snR3 3_flank no 395 31.471854 284.523802 157.997828 2.198651117 0.086005 36 21 20011 YBR084C-A spliced yes 40 1 18 44.806292 350.748062 197.777177 2.296176174 -0.312303 36 22 17100 YHL001W intron no 498 381 402 29.878342 307.344222 168.611282 2.22688663 -0.110301 36 23 16195 YDR381C intron no 294 81 98 32.117296 304.593083 168.3551895 2.226226508 -0.01829 36 24 4020 SRP 5_flank/SRP no 875 32.021349 298.320293 165.170821 2.217933328 0.016899 36 25 453 Asp1 AspGTC_i 3_flank no 271 36.109737 293.785122 164.9474295 2.217345552 0.125602 36 26 2030 Lys3 LysTTT_i tRNA/3_flank no 296 44.338715 297.739901 171.039308 2.233095931 0.126206 36 27 11270 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3236 3253 37.525875 327.54839 182.5371325 2.261351224 -0.157734 36 28 20353 YER117W spliced yes 40 5 25 30.897239 296.275691 163.586465 2.213747368 -0.007755 36 29 17552 YJL189W exon/intron no 486 41 57 41.126089 314.39313 177.7596095 2.249833088 -0.03379 36 30 7500 snR71 3_flank no 290 47.246538 278.666516 162.956527 2.21207176 0.316849 36 31 17641 YJR145C intron no 356 61 82 30.579417 309.756793 170.168105 2.230878163 -0.100478 36 32 16753 YGL076C intron no 559 481 507 28.570779 288.411999 158.491389 2.200005672 -0.068949 36 33 11791 "rRNA(18S,5.8S,25S)" 25S yes 7956 5841 5856 93.538226 356.142106 224.840166 2.351873897 -0.029397 36 34 9371 RUF1 RUF1 yes 750 431 449 28.794195 276.967576 152.8808855 2.18435319 -0.00293 36 35 11550 "rRNA(18S,5.8S,25S)" 25S yes 7956 4636 4653 33.096938 308.128798 170.612868 2.232011784 -0.028278 36 36 18613 YNL069C intron no 549 421 438 37.392493 304.994176 171.1933345 2.233486851 0.04128 36 37 13820 MT_COB bi2 no 7308 1486 1510 31.088842 338.479428 184.784135 2.266664681 -0.286365 36 38 6910 snR58 5_flank no 296 43.766003 280.160231 161.963117 2.209416126 0.292954 36 39 1494 Leu3 LeuCAA_iii 5_flank no 314 33.150114 305.779417 169.4647655 2.229079415 -0.008698 36 40 1436 Leu2 LeuCAA_ii 5_flank no 314 45.73967 307.427227 176.5834485 2.246949994 0.042811 36 41 6125 snR39B 5_flank no 296 41.392877 313.136071 177.264474 2.248621706 -0.02188 36 42 973 Gly1 GlyCCC_i 3_flank no 272 30.768773 282.283318 156.5260455 2.194586613 0.074812 36 43 5055 snR10 3_flank no 445 30.610148 368.411462 199.510805 2.299966421 -0.504818 36 44 8707 LSR1 / U2 RNA U2 yes 1375 176 190 53.238007 318.079686 185.6588465 2.268715648 -0.009722 36 45 19694 Negative Control no 60 NA #VALUE! 38.440332 278.529895 158.4851135 2.199988475 0.283279 36 46 14991 MT_COX 2; ORF1 COX2 no 2427 466 487 30.022192 342.868615 186.4454035 2.270551681 -0.332661 36 47 12805 MT_COX1 ai1 no 13084 1276 1298 28.818752 295.411846 162.115299 2.209824002 -0.087454 36 48 9239 snR6 / U6 RNA U6 yes 312 66 78 39.733829 313.618648 176.6762385 2.247178144 -0.031088 36 49 17764 YKL157W intron/exon no 483 421 439 36.47699 324.149187 180.3130885 2.256027252 -0.131175 36 50 14062 MT_COB bi4 no 7308 5116 5132 33.258287 302.629486 167.9438865 2.225164199 0.018241 36 51 16551 YER133W intron no 625 181 197 33.058648 316.237737 174.6481925 2.242164095 -0.092954 36 52 5615 snR34 5_flank/snR34 no 750 37.838551 273.474962 155.6567565 2.192167977 0.322008 36 53 18188 YML024W intron no 498 61 76 116.073296 361.033365 238.5533305 2.377585484 0.081598 36 54 11710 "rRNA(18S,5.8S,25S)" 25S yes 7956 5436 5449 2873.251599 1559.944441 2216.59802 3.345686941 1.132609 36 55 20449 YGL103W spliced yes 40 21 33 55.08234 302.038563 178.5604515 2.251785275 0.134339 36 56 19906 YAL001C spliced yes 40 5 22 43.49002 323.57938 183.5347 2.263718186 -0.104828 36 57 15962 YDL130W intron no 401 221 240 29.718842 308.882829 169.3008355 2.228659101 -0.125085 36 58 8349 snoRNA cluster4 snR53/3_flank no 638 531 550 27.881017 267.618084 147.7495505 2.169526168 -0.014132 36 59 11901 "rRNA(18S,5.8S,25S)" 25S yes 7956 6391 6406 82.097893 281.304861 181.701377 2.259358219 0.457051 36 60 1493 Leu3 LeuCAA_iii 5_flank no 314 31.812522 284.42388 158.118201 2.198981864 0.097894 36 61 1376 Leu1 LeuCAA_i 5_flank no 315 29.505175 331.965157 180.735166 2.257042662 -0.265309 36 62 14333 MT_VAR1 VAR1 yes 1467 1201 1222 29.192399 287.484032 158.3382155 2.199585746 -0.031214 36 63 19688 Negative Control no 60 NA #VALUE! 36.823881 306.510988 171.6674345 2.234687917 0.026019 36 64 19605 RNA14 1.1 RNA14 1.1 yes 401 1 17 51.459104 288.240591 169.8498475 2.230065161 0.239817 36 65 9268 RUF1 5_flank no 750 58.455659 333.003529 195.729594 2.291656495 -0.097234 36 66 13625 MT_ATP6 ATP6 yes 980 181 203 31.021778 313.868468 172.445123 2.236650916 -0.10976 36 67 15025 MT_COX 2; ORF1 ORF1exon1 yes 2427 976 1002 29.302522 380.34684 204.824681 2.311382287 -0.599074 36 68 10722 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 496 516 29.571508 316.23371 172.902609 2.237801547 -0.173578 36 69 21853 copy of SH17603 no 243 29.797912 295.977943 162.8879275 2.211888898 -0.043734 36 70 5610 snR34 5_flank no 750 31.971139 282.632595 157.301867 2.196733877 0.11472 36 71 2106 Met1 MetCAT_i 5_flank no 273 29.980231 310.501365 170.240798 2.231063646 -0.125563 36 72 6170 snR40 5_flank no 297 31.971322 307.548971 169.7601465 2.229835741 -0.040828 36 73 781 Glu1 GluCTC 5_flank no 272 33.916834 275.600579 154.7587065 2.189655091 0.222799 36 74 17026 YGR148C 3_exon no 479 441 458 50.128479 323.771777 186.950128 2.271725767 -0.073476 36 75 792 Glu1 GluCTC 5_flank no 272 50.153633 305.326623 177.740128 2.249785489 0.081489 36 76 9328 RUF1 RUF1 yes 750 216 232 42.159361 319.378514 180.7689375 2.257123805 -0.07341 36 77 3618 Val1 ValAAC_i 3_flank no 274 30.143 297.115432 163.629216 2.21386085 -0.038773 36 78 19871 Negative Control no 60 NA #VALUE! 35.571638 293.33528 164.453459 2.216043013 0.123172 36 79 1061 Gly3 GlyGCC tRNA yes 271 42 56 59.973374 290.88604 175.429707 2.244103138 0.256977 36 80 14543 MT_21S 21S_rRNA3 yes 4639 2356 2373 32.943942 282.96259 157.953266 2.19852861 0.143871 36 81 21081 YMR292W spliced yes 40 1 13 116.676192 327.089767 221.8829795 2.346123989 0.302434 36 82 5283 snR30 snR30 yes 801 266 282 32.884838 280.66304 156.773939 2.19527387 0.15702 36 83 4829 snR8 5_flank no 390 42.977939 304.856976 173.9174575 2.240343178 0.056971 36 84 18687 YNL112W intron no 1102 921 938 30.110071 302.256625 166.183348 2.220587504 -0.071501 36 85 6960 snR58 3_flank no 296 29.612126 339.295661 184.4538935 2.265887827 -0.312468 36 86 3046 Ser3 SerCGA 5_flank no 301 31.053061 292.218567 161.635814 2.208537595 0.022885 36 87 13880 MT_COB intronic no 7308 2386 2405 30.495556 269.83582 150.165688 2.17657071 0.121006 36 88 8208 snoRNA cluster 3; snR51 yes 743 551 571 31.886928 308.355375 170.1211515 2.230758314 -0.048409 36 89 12540 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 496 520 27.647557 333.765466 180.7065115 2.256973802 -0.343171 36 90 4968 snR9 3_flank no 387 57.078615 287.489067 172.283841 2.236244546 0.272704 36 91 19965 YBL059W spliced yes 40 17 33 43.507132 294.098372 168.802752 2.227379523 0.157264 36 92 8733 LSR1 / U2 RNA U2 yes 1375 306 325 34.001614 312.930716 173.466165 2.239214777 -0.055329 36 93 3693 Val3 ValCAC 5_flank no 273 51.950321 314.679768 183.3150445 2.263198109 0.010831 36 94 6142 snR39B snR39B yes 296 51 67 27.361421 272.042873 149.702147 2.175228029 -0.06572 36 95 2655 Pro4 ProTGG_iii 5_flank no 302 53.525093 324.004489 188.764791 2.275920992 -0.055901 36 96 9321 RUF1 RUF1 yes 750 181 200 30.050883 275.038379 152.544631 2.183396927 0.072753 36 97 20840 YLL050C spliced yes 40 9 25 50.061684 340.696993 195.3793385 2.290878635 -0.205795 36 98 18570 YNL012W intron no 184 101 120 30.197638 306.600241 168.3989395 2.226339352 -0.094739 36 99 13220 MT_COX1 ai4 no 13084 7501 7525 26.64657 324.100171 175.3733705 2.243963649 -0.332634 36 100 5681 snR34 snR34 yes 750 326 342 32.150477 293.716237 162.933357 2.212010006 0.049738 36 101 20990 YML073C spliced yes 40 1 15 69.054467 313.952613 191.50354 2.282176806 0.113726 36 102 8250 snoRNA cluster4 5_flank no 638 36 53 28.572473 241.753868 135.1631705 2.13085837 0.142613 36 103 7087 snR63 5_flank no 455 35.943 290.112454 163.027727 2.212261473 0.154775 36 104 5238 snR30 snR30 yes 801 41 56 41.566389 316.458168 179.0122785 2.25288282 -0.050231 37 2 10692 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 346 363 70.515933 385.908665 228.212299 2.358339046 -0.375662 37 3 5477 snR32 snR32 yes 388 46 63 39.607689 385.048046 212.3278675 2.327006998 -0.588884 37 4 7196 snR64 snR64 yes 301 46 63 39.873682 317.099358 178.48652 2.251605422 -0.061607 37 5 5202 snR13 3_flank no 324 31.459533 275.244969 153.352251 2.185690155 0.142931 37 6 12132 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7546 7559 31.50671 255.615186 143.560948 2.157036318 0.243784 37 7 10674 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 256 276 33.584261 297.696271 165.640266 2.219165919 0.062897 37 8 7010 snR60 3_flank no 304 29.174871 306.634891 167.904881 2.225063321 -0.130927 37 9 17713 YKL081W intron no 426 261 280 61.837265 371.44565 216.6414575 2.335741569 -0.347264 37 10 16674 YFR032C intron no 431 361 378 35.011581 287.741355 161.376468 2.207840206 0.164185 37 11 9061 snR14 / U4 RNA 5_flank no 360 32.651665 276.309307 154.480486 2.188873627 0.178374 37 12 4853 snR8 snR8 yes 390 46 60 36.546052 305.4454 170.995726 2.232985255 0.034385 37 13 10334 RUF7 RUF7 yes 700 281 298 61.122647 346.78705 203.9548485 2.309534034 -0.182731 37 14 16355 YDR500C intron no 439 381 398 32.156566 288.114365 160.1354655 2.204487527 0.085391 37 15 1681 Leu6 LeuGAG 5_flank no 282 37.280984 290.624716 163.95285 2.21471897 0.165549 37 16 9565 RUF3 RUF3 yes 631 211 230 34.332213 268.997562 151.6648875 2.180885047 0.280159 37 17 9438 RUF2 RUF2 yes 468 31 50 30.447701 312.062301 171.255001 2.233643263 -0.118639 37 18 16682 YGL030W intron no 330 101 116 37.040506 309.31397 173.177238 2.238490809 0.00112 37 19 20549 YGR225W spliced yes 40 9 25 35.388871 288.674031 162.031451 2.209599321 0.160625 37 20 1030 Gly2 GlyCCC_ii 3_flank no 272 31.554112 301.631381 166.5927465 2.221656088 -0.018773 37 21 16645 YFR031C 5_exon no 247 21 38 31.885287 301.709489 166.797388 2.222189245 -0.008347 37 22 5410 snR31 snR31 yes 425 116 134 30.998874 292.729471 161.8641725 2.209150731 0.017845 37 23 4990 snR10 5_flank/snR10 no 445 29.943592 320.914344 175.428968 2.244101309 -0.187572 37 24 5108 snR11 snR11 yes 458 141 153 38.504794 270.987584 154.746189 2.189619962 0.351816 37 25 21754 copy of SH13179 no 13084 31.73355 291.396343 161.5649465 2.208347141 0.050708 37 26 9318 RUF1 RUF1 yes 750 166 183 47.441077 313.386863 180.41397 2.256270163 -0.00095 37 27 419 Asp1 AspGTC_i 5_flank no 271 37.422018 304.443095 170.9325565 2.232824788 0.046405 37 28 9521 RUF3 5_flank/RUF3 no 631 37.090809 295.923898 166.5073535 2.221433418 0.118775 37 29 2567 Pro2 ProTGG_i tRNA yes 303 41 53 189.287881 552.054009 370.670945 2.568988545 -0.38451 37 30 10398 RUF8 5_flank no 1151 42.985594 304.658561 173.8220775 2.240104936 0.058782 37 31 3100 Ser4 SerGCT 5_flank no 301 28.461178 300.195909 164.3285435 2.215713006 -0.128246 37 32 7978 snoRNA cluster 2 snR57 yes 739 126 145 30.609329 291.1926 160.9009645 2.206558647 0.014331 37 33 16842 YGL178W intron no 740 621 635 60.09993 326.313517 193.2067235 2.286022236 -0.036019 37 34 10038 RUF6 RUF6 yes 1251 36 53 32.953448 303.113475 168.0334615 2.225395774 0.010479 37 35 17323 YIL004C intron no 231 81 97 33.064515 280.469818 156.7671665 2.195255109 0.163978 37 36 1207 Ile1 IleAAT 5_flank/tRNA no 274 37.350296 279.224613 158.2874545 2.199446495 0.265211 37 37 6182 snR40 5_flank no 297 31.047361 319.956992 175.5021765 2.244282507 -0.14784 37 38 20616 YHR097C spliced yes 40 5 21 41.588353 319.421912 180.5051325 2.256489555 -0.075725 37 39 8120 snoRNA cluster 3; snR41 yes 743 111 135 28.900738 296.002704 162.451721 2.210724317 -0.085701 37 40 19478 ADH1 ADH1 yes 400 261 275 58.403781 303.761846 181.0828135 2.257877234 0.136987 37 41 4962 snR9 3_flank no 387 28.78656 265.216455 147.0015075 2.167321788 0.052492 37 42 8961 snR17a / U3a U3a yes 690 91 108 30.775554 296.476619 163.6260865 2.213852543 -0.013124 37 43 14306 MT_VAR1 VAR1 yes 1467 796 820 28.556796 347.870191 188.2134935 2.274650756 -0.389172 37 44 16909 YGL232W intron/exon no 158 101 122 30.455364 354.426844 192.441104 2.28429784 -0.408666 37 45 832 Glu2 GluTTC_i 5_flank no 272 30.254007 263.493394 146.8737005 2.166944037 0.140323 37 46 8102 snoRNA cluster 3; 5_flank no 743 21 35 67.03275 324.854362 195.943556 2.292130985 0.017087 37 47 7771 snoRNA cluster1 snR76/intergenic no 1574 651 668 29.836367 287.407151 158.621759 2.200362762 0.003045 37 48 5271 snR30 snR30 yes 801 206 220 60.014527 287.385352 173.6999395 2.239799667 0.288523 37 49 12375 5S rRNA NTS2 no 1420 831 848 31.426978 290.885566 161.156272 2.207247212 0.043801 37 50 14521 MT_21S 21S_rRNA3 yes 4639 2026 2043 43.167058 309.659281 176.4131695 2.246531003 0.014724 37 51 18545 YMR230W intron no 510 281 298 29.042398 305.834517 167.4384575 2.223855214 -0.130867 37 52 20155 YDL125C spliced yes 40 17 34 34.811738 321.364424 178.088081 2.250634854 -0.111333 37 53 10731 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 541 554 62.478247 301.039883 181.759065 2.25949608 0.181668 37 54 5998 snR37 5_flank no 586 42.793537 301.570486 172.1820115 2.235987777 0.086089 37 55 13373 MT_COX1 intronic no 13084 9796 9820 33.15531 342.983505 188.0694075 2.274318156 -0.297698 37 56 20432 YGL076C spliced yes 40 1 17 31.484017 317.768658 174.6263375 2.242109745 -0.125096 37 57 12321 5S rRNA NTS2 no 1420 561 580 31.792479 302.815654 167.3040665 2.223506497 -0.018129 37 58 7854 snoRNA cluster1 intergenic no 1574 1066 1082 86.144984 293.256881 189.7009325 2.278069466 0.379294 37 59 16379 YER007C 5_exon no 203 21 37 95.222281 316.466074 205.8441775 2.313538587 0.251856 37 60 14468 MT_21S 21S_rRNA3 yes 4639 1231 1253 29.821148 296.696622 163.258885 2.212876826 -0.047386 37 61 6331 snR42 3_flank no 551 90.909142 323.374221 207.1416815 2.316267497 0.176172 37 62 15570 YBR084C intron no 606 161 177 43.200695 281.822474 162.5115845 2.210884325 0.275239 37 63 14047 MT_COB bi4 no 7308 4891 4912 29.022127 350.154653 189.58839 2.277811739 -0.398655 37 64 20465 YGL183C spliced yes 40 17 31 56.56819 316.34108 186.454635 2.270573184 0.022471 37 65 19125 YPL075W 5_exon no 851 21 39 30.930078 287.791161 159.3606195 2.202381009 0.04685 37 66 8600 snR19 / U1 RNA U1 yes 868 496 515 29.124974 322.629762 175.877368 2.245209958 -0.226333 37 67 5128 snR11 snR11 yes 458 241 257 49.355828 317.162668 183.259248 2.2630659 -0.022847 37 68 12441 5S rRNA NTS2 no 1420 1161 1175 120.733863 349.271686 235.0027745 2.37107299 0.181482 37 69 20748 YJL205C-A spliced yes 40 21 39 30.812326 279.440543 155.1264345 2.190685811 0.090488 37 70 10588 RUF8 RUF8 yes 1151 866 882 37.041634 300.536158 168.788896 2.227343873 0.080005 37 71 18563 YMR292W 3_exon no 182 141 155 34.018928 267.424632 150.72178 2.178176014 0.281384 37 72 8843 LSR1 / U2 RNA U2 yes 1375 856 868 1454.190149 2410.553712 1932.371931 3.28609072 -0.443747 37 73 10504 RUF8 RUF8 yes 1151 446 462 33.844686 293.449838 163.647262 2.213908743 0.101601 37 74 10310 RUF7 RUF7 yes 700 161 177 33.746227 319.392892 176.5695595 2.246915834 -0.108965 37 75 18630 YNL096C intron no 445 221 237 33.719174 301.274222 167.496698 2.22400625 0.035032 37 76 16940 YGR027C intron no 412 161 178 35.822461 298.493701 167.158081 2.223127377 0.083 37 77 3421 Trp1 TrpCCA 5_flank no 306 33.980046 295.14293 164.561488 2.216328206 0.089036 37 78 13841 MT_COB bi2 no 7308 1801 1823 30.137436 326.9771 178.557268 2.251777532 -0.215293 37 79 5008 snR10 snR10 yes 445 71 87 40.694312 305.158428 172.92637 2.237861225 0.047502 37 80 2948 Ser1 SerAGA_i 5_flank no 283 34.693034 288.628443 161.6607385 2.208604558 0.152793 37 81 9961 RUF5-1 RUF5-1 yes 975 611 630 28.539631 307.576454 168.0580425 2.225459301 -0.159559 37 82 20239 YDR305C spliced yes 40 17 36 29.503768 306.318794 167.911281 2.225079875 -0.117322 37 83 14205 MT_COB 3_flank no 7308 7261 7289 28.254037 320.092778 174.1734075 2.240981848 -0.2435 37 84 9844 RUF5-1 RUF5-1 yes 975 26 47 31.972282 326.297212 179.134747 2.253179835 -0.184177 37 85 12478 5S rRNA 5S yes 1420 1346 1360 625.866859 607.138998 616.5029285 2.789935144 0.73699 37 86 19335 YPL241C 5_exon no 180 21 38 32.899724 279.081317 155.9905205 2.193098207 0.167898 37 87 16853 YGL183C intron no 183 101 113 83.770461 322.495751 203.133106 2.307780709 0.138369 37 88 18990 YOR096W 3_exon no 501 481 497 48.934416 289.817369 169.3758925 2.228851597 0.214227 37 89 18089 YLR367W 5_exon no 583 1 17 29.396589 289.051317 159.223953 2.202008402 -0.027624 37 90 18851 YNR053C 5_exon no 631 1 23 28.982742 305.581691 167.2822165 2.223449774 -0.131491 37 91 14357 MT_ORF9; ORF10 ORF9 yes 578 121 133 28.628477 230.815421 129.721949 2.113013465 0.195255 37 92 9359 RUF1 RUF1 yes 750 371 387 35.55985 295.051903 165.3058765 2.218288293 0.108615 37 93 187 Arg2 ArgACG_ii tRNA yes 273 51 65 55.116259 331.178501 193.14738 2.285888821 -0.103899 37 94 5224 snR30 5_flank no 801 27.980653 274.239557 151.110105 2.179293507 -0.035085 37 95 2707 Pro5 ProTGG_iv 5_flank no 303 84.101155 324.086567 204.093861 2.309829942 0.128958 37 96 7260 snR65 snR65 yes 300 76 95 29.69565 268.02118 148.858415 2.17277339 0.088691 37 97 5467 snR32 5_flank/snR32 no 388 42.257091 341.738573 191.997832 2.283296325 -0.257996 37 98 1799 Leu8 LeuTAG_i tRNA yes 301 20:B 36 35.182311 347.154982 191.1686465 2.281416665 -0.326057 37 99 7940 snoRNA cluster1 3_flank no 1574 1496 1515 29.89056 285.034069 157.4623145 2.197176631 0.016905 37 100 2800 Pro6 ProTGG_v tRNA/3_flank no 302 57.108046 272.766569 164.9373075 2.217318901 0.411059 37 101 18322 YML085C intron no 216 141 163 30.028276 261.183367 145.6058215 2.163178739 0.140412 37 102 1241 Ile2 IleTAT_i 5_flank no 333 30.089407 251.965085 141.027246 2.149303025 0.188012 37 103 515 Asp2 AspGTC_ii 3_flank no 272 37.447107 349.67123 193.5591685 2.286813748 -0.338849 37 104 1248 Ile2 IleTAT_i 5_flank no 333 32.020324 345.098607 188.5594655 2.275448338 -0.322003 38 2 4218 telomerase RNA telomerase yes 1501 126 138 49.908093 338.308329 194.108211 2.288043907 -0.188494 38 3 1127 Gly4 GlyTCC 3_flank no 272 35.286033 348.556303 191.921168 2.283122878 -0.337045 38 4 10005 RUF5-1 3_flank no 975 31.279628 286.386165 158.8328965 2.200940456 0.067596 38 5 16625 YFL039C intron no 408 241 260 29.31022 291.025955 160.1680875 2.20457599 -0.041262 38 6 10728 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 526 543 42.257361 334.663823 188.460592 2.275220551 -0.201312 38 7 21886 copy of SH18601 no 549 29.354411 320.487429 174.92092 2.242841753 -0.205873 38 8 16923 YGL251C 3_exon no 252 221 239 33.494707 302.378002 167.9363545 2.225144721 0.023228 38 9 13823 MT_COB bi2 no 7308 1531 1552 29.057208 311.30201 170.179609 2.230907521 -0.162959 38 10 21102 YNL050C spliced yes 40 9 29 28.836849 307.679097 168.257973 2.225975653 -0.149355 38 11 18272 YML056C intron no 508 321 342 31.729158 304.689985 168.2095715 2.225850704 -0.031572 38 12 9706 RUF4 RUF4 yes 988 306 318 32.532718 278.108661 155.3206895 2.19122931 0.162612 38 13 1748 Leu7 LeuTAA tRNA yes 284 35 e2 44.71739 296.937023 170.8272065 2.232557039 0.134823 38 14 14606 MT_21S Sce1 no 4639 3301 3318 34.278814 314.163199 174.2210065 2.241100518 -0.061681 38 15 157 Arg2 ArgACG_ii 5_flank no 273 34.255625 288.657374 161.4564995 2.208055532 0.147292 38 16 9603 RUF3 RUF3 yes 631 401 417 85.927189 346.262725 216.094957 2.334644632 -0.014655 38 17 4121 SRP SRP yes 875 496 508 87.509637 345.144092 216.3268645 2.335110456 0.002792 38 18 17682 YKL006W intron no 498 141 156 68.600465 320.136655 194.36856 2.288626017 0.062856 38 19 16189 YDR367W 3_exon no 201 161 173 29.025514 285.704928 157.365221 2.196908756 -0.031856 38 20 13810 MT_COB bi2 no 7308 1336 1360 29.38511 306.62286 168.003985 2.225319583 -0.123357 38 21 3745 Val4 ValTAC 5_flank no 274 36.161429 317.270686 176.7160575 2.247276014 -0.072039 38 22 16572 YER133W 3_exon no 625 601 618 32.022361 290.178125 161.100243 2.207096195 0.067882 38 23 800 Glu1 GluCTC tRNA yes 272 16 30 408.633669 670.645134 539.6394015 2.732103652 0.070113 38 24 9144 snR7 U5 RNA 5_flank/U5 no 415 34.057757 306.48905 170.2734035 2.231146817 -0.003242 38 25 5984 snR36 3_flank no 555 29.49076 304.403635 166.9471975 2.222579133 -0.106235 38 26 5125 snR11 snR11 yes 458 226 245 33.443788 290.621864 162.032826 2.209603007 0.110421 38 27 17235 YHR077C 3_exon no 213 181 198 37.326971 319.664549 178.49576 2.251627904 -0.090145 38 28 8742 LSR1 / U2 RNA U2 yes 1375 351 368 34.927845 307.190591 171.059218 2.233146482 0.001553 38 29 14806 MT_Lys; Arg1; Gly intergenic no 682 271 299 30.579447 334.788396 182.6839215 2.261700326 -0.266108 38 30 8670 LSR1 / U2 RNA 5_flank/U2 no 1375 45.031089 283.220481 164.125785 2.215176816 0.265546 38 31 10744 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 606 623 61.768281 330.338935 196.053608 2.292374839 -0.057248 38 32 2955 Ser1 SerAGA_i tRNA yes 283 6 19 436.657431 654.797072 545.7272515 2.736975641 0.187805 38 33 3965 RNase MRP RNaseMRP yes 540 241 259 28.645163 296.239301 162.442232 2.210698948 -0.100567 38 34 2752 Pro5 ProTGG_iv 3_flank no 303 39.24961 286.733216 162.991413 2.212164725 0.218213 38 35 13861 MT_COB bi2 no 7308 2101 2123 30.963597 326.529943 178.74677 2.252238203 -0.199213 38 36 11842 "rRNA(18S,5.8S,25S)" 25S yes 7956 6096 6109 19110.9082 16845.12883 17978.01851 4.254741823 -0.476664 38 37 12830 MT_COX1 ai1 no 13084 1651 1670 33.157589 310.28023 171.7189095 2.234818122 -0.044715 38 38 19437 YPR187W 5_exon no 176 1 18 41.597376 324.072352 182.834864 2.262059013 -0.115341 38 39 11640 "rRNA(18S,5.8S,25S)" 25S yes 7956 5086 5102 12363.89571 13910.17218 13137.03394 4.118497322 -0.690559 38 40 17675 YKL006W 5_exon no 498 1 17 35.176895 289.379905 162.2784 2.210260717 0.152102 38 41 10438 RUF8 RUF8 yes 1151 116 132 41.419937 279.845194 160.6325655 2.205833596 0.291068 38 42 8904 LSR1 / U2 RNA U2/3_flank no 1375 32.907909 311.854661 172.381285 2.236490114 -0.060354 38 43 21225 YOR182C spliced yes 40 21 37 36.938411 292.453925 164.696168 2.216683495 0.14622 38 44 20757 YJR094W-A spliced yes 40 9 28 102.988045 417.991435 260.48974 2.415790622 -0.322497 38 45 19553 CBP1 2.2 CBP1 2.2 yes 401 161 182 38.558246 353.87962 196.218933 2.29274091 -0.3675 38 46 7301 snR66 5_flank/snR66 no 286 32.145825 332.63146 182.3886425 2.260997791 -0.229451 38 47 3707 Val3 ValCAC tRNA yes 273 16 30 33.953012 418.350617 226.1518145 2.354400077 -0.844687 38 48 8766 LSR1 / U2 RNA U2 yes 1375 471 486 123.07421 373.936932 248.505571 2.395336129 0.047222 38 49 21781 copy of SH14231 no 431 31.477548 370.140376 200.808962 2.302783091 -0.515349 38 50 144 Arg1 ArgACG_i 3_flank no 273 31.264058 303.142386 167.203222 2.223244642 -0.037616 38 51 4466 telomerase RNA 3_flank no 1501 31.07926 316.792672 173.935966 2.240389394 -0.124901 38 52 3089 Ser3 SerCGA 3_flank no 301 40.841345 277.607041 159.224193 2.202009056 0.31222 38 53 9121 snR14 / U4 RNA 3_flank no 360 50.749892 354.439014 202.594453 2.30662755 -0.304105 38 54 10396 RUF8 5_flank no 1151 60.949425 301.640063 181.294744 2.258385213 0.167792 38 55 8729 LSR1 / U2 RNA U2 yes 1375 286 307 32.317516 263.637993 147.9777545 2.170196433 0.242111 38 56 14347 MT_VAR1 3_flank no 1467 1411 1423 41.724423 304.660128 173.1922755 2.238528518 0.054527 38 57 13235 MT_COX1 ai4 no 13084 7726 7745 29.885049 337.592976 183.7390125 2.264201378 -0.296236 38 58 768 Gln4 GlnTTG_iii 3_flank no 272 82.365597 308.250987 195.308292 2.290720682 0.237846 38 59 6412 snR45 5_flank no 372 30.037703 295.685169 162.861436 2.21181826 -0.033543 38 60 16312 YDR471W 5_exon no 484 1 20 35.965766 306.918738 171.442252 2.234117863 0.015866 38 61 8175 snoRNA cluster 3; snR70 yes 743 386 403 39.67684 310.967919 175.3223795 2.243837356 -0.007503 38 62 51 Ala1 AlaAGC 3_flank no 273 29.31933 245.34684 137.333085 2.137775176 0.171822 38 63 7527 snR79 5_flank no 284 31.085624 276.195762 153.640693 2.186506257 0.119761 38 64 20218 YDR092W spliced yes 40 1 18 34.935872 322.124547 178.5302095 2.251711715 -0.117609 38 65 13857 MT_COB bi2 no 7308 2041 2062 33.007616 347.96141 190.484513 2.279859672 -0.338366 38 66 20029 YBR181C spliced yes 40 5 20 51.106798 324.765672 187.936235 2.274010522 -0.075695 38 67 19792 Negative Control no 60 NA #VALUE! 41.417618 283.100606 162.259112 2.210209095 0.258747 38 68 9652 RUF4 RUF4 yes 988 36 53 27.620647 289.732043 158.676345 2.200512188 -0.12758 38 69 11820 "rRNA(18S,5.8S,25S)" 25S yes 7956 5986 6002 62.375893 293.082895 177.729394 2.24975926 0.249156 38 70 9518 RUF3 5_flank no 631 31.934396 326.833695 179.3840455 2.253783814 -0.188728 38 71 13689 MT_ORF 5 ORF5 yes 331 181 197 30.929077 289.708612 160.3188445 2.204984574 0.03459 38 72 15024 MT_COX 2; ORF1 ORF1exon1 yes 2427 961 982 29.839745 329.849803 179.844774 2.254897822 -0.241765 38 73 21251 YPL075W spliced yes 40 1 22 28.706746 319.178235 173.9424905 2.240405684 -0.221634 38 74 1097 Gly4 GlyTCC 5_flank no 272 32.604994 297.094049 164.8495215 2.217087691 0.043344 38 75 5921 snR36 snR36 yes 555 61 77 33.525 284.580195 159.0525975 2.201540766 0.151633 38 76 10999 "rRNA(18S,5.8S,25S)" 18S yes 7956 1881 1898 34868.4745 10203.48494 22535.97972 4.352876443 1.092203 38 77 3295 Thr2 ThrCGT 3_flank no 272 31.630344 329.573883 180.6021135 2.256722828 -0.213323 38 78 7949 snoRNA cluster1 3_flank no 1574 1541 1557 87.635868 328.813838 208.224853 2.318532564 0.11724 38 79 5344 snR30 snR30 yes 801 571 587 34.053201 287.799273 160.926237 2.206626856 0.147247 38 80 5848 snR35 snR35 yes 740 426 445 28.106996 316.271867 172.1894315 2.236006492 -0.226839 38 81 21346 YPR132W spliced yes 40 1 15 34.347345 277.849001 156.098173 2.19339782 0.22101 38 82 8346 snoRNA cluster4 snR53 yes 638 516 533 32.262128 293.504473 162.8833005 2.211876561 0.054686 38 83 16739 YGL076C intron no 559 201 218 30.043681 271.785354 150.9145175 2.17873102 0.088224 38 84 5061 snR11 5_flank no 458 61.210766 357.591377 209.4010715 2.3209789 -0.257789 38 85 7950 snoRNA cluster1 3_flank no 1574 1546 1561 59.367879 313.232876 186.3003775 2.270213735 0.063051 38 86 13471 MT_COX1 intronic no 13084 11266 11284 34.747963 282.970278 158.8591205 2.201012154 0.199492 38 87 5543 snR33 snR33 yes 383 1 17 91.143436 339.373271 215.2583535 2.332960014 0.065623 38 88 1914 Lys1 LysCTT_i tRNA yes 272 26 45 33.582508 302.135216 167.858862 2.224944274 0.026297 38 89 19550 CBP1 2.2 CBP1 2.2 yes 401 101 115 57.431726 323.430896 190.431311 2.279738357 -0.029792 38 90 2318 Phe3 PheGAA_iii 5_flank no 291 28.878698 289.499125 159.1889115 2.201912813 -0.057303 38 91 7561 snR79 3_flank no 284 28.494934 292.970616 160.732775 2.206104443 -0.093962 38 92 17397 YIL069C intron no 509 281 298 33.552214 302.834191 168.1932025 2.22580844 0.020213 38 93 1643 Leu5 LeuCAA_v tRNA yes 315 e13 55 5806.176404 3488.428937 4647.302671 3.667200958 0.69239 38 94 11427 "rRNA(18S,5.8S,25S)" 25S yes 7956 4021 4034 32248.09761 13316.02399 22782.0608 4.357593007 0.554216 38 95 7046 snR62 snR62 yes 300 21 41 38.242867 291.234542 164.7387045 2.216795646 0.170916 38 96 17044 YGR214W 5_exon no 555 21 37 54.181975 321.856602 188.0192885 2.274202405 -0.035063 38 97 21616 copy of SH7317 no 286 31.183914 310.450914 170.817414 2.232532143 -0.084159 38 98 15593 YBR089C 5_exon no 214 21 36 65.085875 360.29848 212.6921775 2.327751517 -0.250655 38 99 20148 YDL115C spliced yes 40 13 30 71.497641 413.521873 242.509757 2.384729216 -0.530265 38 100 1292 Ile2 IleTAT_i 3_flank no 333 27.844125 306.94359 167.3938575 2.223739518 -0.191903 38 101 19267 YPL143W intron no 625 221 238 45.825185 261.180404 153.5027945 2.186116286 0.493158 38 102 2392 Phe4 PheGAA_iv tRNA yes 291 11 25 91.437122 348.111595 219.7743585 2.341977021 0.009314 38 103 7906 snoRNA cluster1 intergenic no 1574 1326 1347 28.053309 315.532752 171.7930305 2.235005541 -0.224527 38 104 8740 LSR1 / U2 RNA U2 yes 1375 341 357 42.716431 341.00191 191.8591705 2.282982562 -0.249644 39 2 10650 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 136 149 1100.643639 5054.282194 3077.462917 3.488192828 -1.981068 39 3 6517 snR46 snR46 yes 397 76 93 37.344245 321.938036 179.6411405 2.254405804 -0.109904 39 4 19132 YPL075W intron no 851 161 178 33.330952 281.871099 157.6010255 2.197559039 0.163182 39 5 10887 "rRNA(18S,5.8S,25S)" 18S yes 7956 1321 1336 262.01885 470.61679 366.31782 2.563858046 0.232438 39 6 18007 YLR287C intron no 530 321 340 29.313935 266.243839 147.778887 2.169612391 0.077449 39 7 4265 telomerase RNA telomerase yes 1501 361 378 29.306258 281.869778 155.588018 2.191976148 0.001096 39 8 436 Asp1 AspGTC_i tRNA yes 271 1 18 31.339694 321.238484 176.289089 2.246225433 -0.153838 39 9 11801 "rRNA(18S,5.8S,25S)" 25S yes 7956 5891 5908 26852.81434 25905.57035 26379.19234 4.421261495 -0.775174 39 10 14009 MT_COB intronic no 7308 4321 4340 33.04919 320.186699 176.6179445 2.247034826 -0.123741 39 11 10075 RUF6 RUF6 yes 1251 221 235 31.753134 271.380669 151.5669015 2.180604372 0.176192 39 12 6039 snR37 snR37 yes 586 111 127 32.550037 304.06572 168.3078785 2.226104446 -0.002373 39 13 16455 YER074W intron no 202 101 123 30.286705 288.085738 159.1862215 2.201905474 0.023017 39 14 18861 YNR053C intron no 631 201 218 34.245052 305.70949 169.977271 2.230390852 0.005322 39 15 13692 MT_ORF 5 ORF5/3_flank no 331 226 254 32.144072 300.33437 166.239221 2.220733495 0.008505 39 16 3115 Ser4 SerGCT 5_flank no 301 32.209097 280.181229 156.195163 2.193667581 0.138502 39 17 12552 MT_15S 5_flank no 1848 31 57 28.288959 291.604524 159.9467415 2.203975397 -0.099011 39 18 2480 Phe5 PheGAA_v 3_flank no 291 83.968205 318.798989 201.383597 2.304024094 0.166681 39 19 10499 RUF8 RUF8 yes 1151 421 442 28.912919 305.701244 167.3070815 2.223514323 -0.13473 39 20 3299 Thr2 ThrCGT 3_flank no 272 29.265701 292.253706 160.7597035 2.206177197 -0.04923 39 21 4684 snR4 5_flank no 386 33.853961 281.853051 157.853506 2.198254232 0.179558 39 22 5154 snR13 5_flank no 324 38.375382 333.238834 185.807108 2.269062324 -0.203332 39 23 952 Gly1 GlyCCC_i tRNA yes 272 11 28 31.893293 300.335873 166.114583 2.22040776 0.000317 39 24 1358 Ile3 IleTAT_ii 3_flank no 333 31.756821 286.25613 159.0064755 2.201414811 0.084242 39 25 17533 YJL177W intron no 417 61 83 33.653489 334.970216 184.3118525 2.265553264 -0.230282 39 26 5588 snR33 3_flank no 383 33.347526 281.913264 157.630395 2.197639964 0.163426 39 27 35 Ala1 AlaAGC tRNA/3_flank no 273 35.154675 317.025824 176.0902495 2.245735309 -0.073651 39 28 17842 YKR094C intron no 468 281 300 30.728179 289.003027 159.865603 2.20375503 0.032275 39 29 1599 Leu4 LeuCAA_iv 3_flank no 314 34.732228 315.208748 174.970488 2.242964803 -0.064451 39 30 21594 copy of SH6470 no 372 38.816576 302.434674 170.625625 2.232044255 0.068239 39 31 16715 YGL031C intron no 556 441 459 30.542638 308.594002 169.56832 2.229344717 -0.094811 39 32 21740 copy of SH12550 no 1848 30.6303 304.17129 167.400795 2.223757516 -0.06524 39 33 10088 RUF6 RUF6 yes 1251 286 303 32.841849 282.237951 157.5399 2.197390565 0.145351 39 34 1750 Leu7 LeuTAA tRNA yes 284 e11 47 60.404552 312.553777 186.4791645 2.270630315 0.074717 39 35 19583 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 361 377 30.989765 273.812673 152.401219 2.182988441 0.126502 39 36 1504 Leu3 LeuCAA_iii 5_flank/tRNA no 314 35.278554 290.978225 163.1283895 2.212529549 0.139685 39 37 12713 MT_ORF 8 ORF8 yes 491 361 385 28.981984 272.516778 150.749381 2.178255538 0.028743 39 38 10295 RUF7 RUF7 yes 700 86 105 33.201201 319.660333 176.430767 2.246574322 -0.117775 39 39 6976 snR60 5_flank no 304 52.256157 283.363282 167.8097195 2.224817111 0.288641 39 40 7016 snR60 3_flank no 304 85.025741 317.582385 201.304063 2.303852541 0.182409 39 41 11185 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2811 2828 30.979428 253.388203 142.1838155 2.152850164 0.229213 39 42 20419 YGL030W spliced yes 40 21 35 39.292156 335.49368 187.392918 2.272753174 -0.218467 39 43 14961 MT_COX 2; ORF1 5_flank no 2427 16 44 28.674481 359.99767 194.3360755 2.288553428 -0.472157 39 44 15750 YCR031C intron no 407 81 98 32.669404 263.571905 148.1206545 2.170615622 0.259272 39 45 10179 RUF6 RUF6 yes 1251 741 757 36.598314 285.918092 161.258203 2.207521816 0.198247 39 46 10899 "rRNA(18S,5.8S,25S)" 18S yes 7956 1381 1398 32.246616 276.151936 154.199276 2.188082335 0.166388 39 47 11681 "rRNA(18S,5.8S,25S)" 25S yes 7956 5291 5306 202.57078 526.161102 364.365941 2.561537775 -0.22743 39 48 7304 snR66 snR66 yes 286 11 28 79.715422 343.617892 211.666657 2.325652451 -0.037213 39 49 9074 snR14 / U4 RNA 5_flank/U4 no 360 55.914663 285.382424 170.6485435 2.232102586 0.286518 39 50 1729 Leu7 LeuTAA 5_flank no 284 84.652282 335.344798 209.99854 2.322216275 0.052404 39 51 8071 snoRNA cluster 2 snR61 yes 739 591 610 705.22438 775.705926 740.465153 2.869504625 0.463227 39 52 20373 YER179W spliced yes 40 5 22 39.141992 314.027928 176.58496 2.246953711 -0.036102 39 53 8417 snoRNA cluster 5 snR190 yes 586 251 268 33.189494 289.531004 161.360249 2.207796555 0.109375 39 54 11939 "rRNA(18S,5.8S,25S)" 25S yes 7956 6581 6596 87.356914 330.57092 208.963917 2.3200713 0.103019 39 55 3933 RNase MRP RNaseMRP yes 540 81 96 53.802006 283.826809 168.8144075 2.227409509 0.291487 39 56 12986 MT_COX1 ai2 no 13084 3991 4015 27.809812 320.936617 174.3732145 2.241479774 -0.264896 39 57 3400 Thr4 ThrTGT_ii 3_flank no 272 35.166857 327.445165 181.306011 2.258412203 -0.162781 39 58 33 Ala1 AlaAGC tRNA yes 273 61 73 34.271784 248.949383 141.6105835 2.151095712 0.409676 39 59 18704 YNL130C intron no 541 161 180 28.086129 288.973197 158.529663 2.200110536 -0.098121 39 60 7093 snR63 5_flank no 455 31.982284 292.180988 162.081636 2.209733812 0.05391 39 61 12215 5S rRNA NTS2 no 1420 31 47 60.116965 302.254188 181.1855765 2.258123622 0.158446 39 62 21507 copy of SH2799 no 302 67.664707 294.690966 181.1778365 2.258105069 0.264026 39 63 6827 snR52 snR52 yes 292 41 60 29.221582 322.568116 175.894849 2.245253122 -0.222523 39 64 19223 YPL090C 5_exon no 494 21 37 315.761852 466.438458 391.100155 2.592287988 0.434053 39 65 9739 RUF4 RUF4 yes 988 471 488 31.154418 293.477316 162.315867 2.210360976 0.018374 39 66 13564 MT_COX1 exon6 yes 13084 12661 12682 29.301169 321.860337 175.580753 2.244476907 -0.215639 39 67 17736 YKL156W intron no 450 301 317 33.479096 297.492931 165.4860135 2.218761294 0.063287 39 68 17775 YKL180W intron no 406 161 180 29.65607 292.960649 161.3083595 2.207656874 -0.031858 39 69 349 Arg5 ArgTCT 3_flank no 272 48.066122 299.045517 173.5558195 2.239439181 0.125919 39 70 10484 RUF8 RUF8 yes 1151 346 365 27.841973 311.993221 169.917597 2.230238358 -0.213752 39 71 9293 RUF1 RUF1 yes 750 41 59 29.849689 295.284072 162.5668805 2.211032072 -0.0376 39 72 1400 Leu1 LeuCAA_i intron/tRNA no 315 i33 e22 89.520336 315.076025 202.2981805 2.305991977 0.22882 39 73 5675 snR34 snR34 yes 750 296 313 31.59855 316.541894 174.070222 2.240724483 -0.114033 39 74 18385 YMR116C intron no 373 201 217 33.416702 304.19447 168.805586 2.227386814 0.007461 39 75 8570 snR19 / U1 RNA U1 yes 868 346 358 29.2853 270.855564 150.070432 2.176295133 0.053062 39 76 2362 Phe3 PheGAA_iii 3_flank no 291 72.344702 317.790552 195.067627 2.290185201 0.103274 39 77 17838 YKR094C intron no 468 201 213 39.219786 290.039259 164.6295225 2.216507719 0.186112 39 78 20597 YHR041C spliced yes 40 1 17 33.368505 284.802236 159.0853705 2.201630244 0.145311 39 79 13864 MT_COB intronic no 7308 2146 2172 29.539871 319.626421 174.583146 2.242002315 -0.194343 39 80 17581 YJL191W intron no 508 141 162 31.720628 319.225545 175.4730865 2.244210515 -0.1333 39 81 8103 snoRNA cluster 3; 5_flank no 743 26 42 44.028177 297.157249 170.592713 2.231960476 0.130578 39 82 10055 RUF6 RUF6 yes 1251 121 138 27.828768 298.186809 163.0077885 2.212208355 -0.154218 39 83 18404 YMR125W intron no 422 221 240 29.75895 277.69918 153.729065 2.186755986 0.044764 39 84 19410 YPR098C intron no 196 101 118 34.552973 299.970256 167.2616145 2.223396285 0.055865 39 85 20608 YHR077C spliced yes 40 21 37 53.102699 360.663587 206.883143 2.315725105 -0.333266 39 86 9650 RUF4 RUF4 yes 988 26 42 34.668734 284.902514 159.785624 2.203537703 0.184579 39 87 15580 YBR084C intron no 606 361 381 30.273808 331.981561 181.1276845 2.257984835 -0.249461 39 88 11399 "rRNA(18S,5.8S,25S)" 25S yes 7956 3881 3897 65.045329 304.313436 184.6793825 2.266418414 0.168692 39 89 8281 snoRNA cluster4 intergenic no 638 191 212 29.296404 321.532878 175.414641 2.244065839 -0.213935 39 90 3825 RNaseP RNaseP yes 569 91 106 67.640502 308.154244 187.897373 2.273920708 0.151026 39 91 19547 CBP1 2.2 CBP1 2.2 yes 401 41 60 30.233228 316.51783 173.375529 2.238987799 -0.152122 39 92 2111 Met1 MetCAT_i 5_flank no 273 28.959526 327.489778 178.224652 2.250967775 -0.25981 39 93 6974 snR60 5_flank no 304 38.411678 275.044838 156.728258 2.195147307 0.314087 39 94 8364 snoRNA cluster4 3_flank no 638 606 622 38.137781 288.4482 163.2929905 2.212967543 0.193535 39 95 3938 RNase MRP RNaseMRP yes 540 106 122 143.121341 406.079623 274.600482 2.438701295 -0.011863 39 96 2150 Met1 MetCAT_i 3_flank no 273 36.17397 380.816428 208.495199 2.319096059 -0.577817 39 97 17659 YKL002W intron no 168 81 98 27.436366 278.465186 152.950776 2.184551685 -0.086909 39 98 17845 YKR094C intron no 468 341 360 29.224294 317.239755 173.2320245 2.238628181 -0.191759 39 99 2263 Phe2 PheGAA_ii 5_flank no 292 30.158357 302.464423 166.31139 2.220921993 -0.071093 39 100 19234 YPL090C intron no 494 241 255 59.497691 284.624257 172.060974 2.235682377 0.310947 39 101 12763 MT_COX1 ai1 no 13084 646 660 57.912596 246.843154 152.377875 2.182921913 0.678459 39 102 11778 "rRNA(18S,5.8S,25S)" 25S yes 7956 5776 5793 81.91272 265.392151 173.6524355 2.239680879 0.599711 39 103 18294 YML073C intron no 515 81 100 29.594319 295.756797 162.675558 2.211322305 -0.049517 39 104 7200 snR64 snR64 yes 301 66 83 33.285155 353.3241 193.3046275 2.286242251 -0.380335 40 2 8987 snR17a / U3a U3a yes 690 221 237 32.737996 332.494116 182.616056 2.261538959 -0.220872 40 3 21585 copy of SH6042 no 586 32.963243 317.605123 175.284183 2.243742729 -0.104813 40 4 19953 YBL050W spliced yes 40 21 35 157.716657 476.596708 317.1566825 2.501273866 -0.257339 40 5 5056 snR10 3_flank no 445 29.058634 280.450212 154.754423 2.18964307 -0.005365 40 6 15868 YDL079C intron no 392 281 300 31.251081 295.458507 163.354794 2.213131884 0.009221 40 7 873 Glu2 GluTTC_i 3_flank no 272 33.371052 302.04666 167.708856 2.224555996 0.024406 40 8 908 Glu3 GluTTC_ii tRNA yes 272 52 64 37.523342 273.53755 155.530446 2.191815417 0.317979 40 9 14894 MT_Ile 5_flank no 276 61 89 28.922074 307.312369 168.1172215 2.225612204 -0.144078 40 10 12733 MT_COX1 exon1 yes 13084 196 215 32.917884 299.259717 166.0888005 2.220340349 0.039945 40 11 16173 YDR305C 5_exon no 189 21 39 30.60043 295.27817 162.9393 2.212025846 -0.011625 40 12 8100 snoRNA cluster 3; 5_flank no 743 11 25 40.692099 326.467113 183.579606 2.263824433 -0.13867 40 13 10096 RUF6 RUF6 yes 1251 326 342 34.25782 287.492354 160.875087 2.206488795 0.155467 40 14 12541 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 511 535 27.974388 317.36448 172.669434 2.237215465 -0.238127 40 15 14379 MT_ORF9; ORF10 ORF10 yes 578 451 475 27.910128 305.793716 166.851922 2.222331214 -0.183227 40 16 1095 Gly4 GlyTCC 5_flank no 272 34.058834 323.150881 178.6048575 2.251893266 -0.134055 40 17 16770 YGL103W intron no 611 81 96 50.723557 321.27802 186.0007885 2.269514785 -0.049979 40 18 10089 RUF6 RUF6 yes 1251 291 307 30.455472 278.183396 154.319434 2.188420622 0.078392 40 19 17562 YJL189W intron no 486 241 255 68.755538 304.471755 186.6136465 2.270943399 0.187529 40 20 3685 Val3 ValCAC 5_flank no 273 31.197372 316.65893 173.928151 2.24036988 -0.120238 40 21 7062 snR62 3_flank no 300 33.640159 296.203588 164.9218735 2.21727826 0.076008 40 22 14801 MT_Lys; Arg1; Gly intergenic no 682 196 220 29.531999 324.508441 177.02022 2.248022876 -0.222531 40 23 17535 YJL177W intron no 417 101 113 110.114941 400.732595 255.423768 2.407261307 -0.18338 40 24 2347 Phe3 PheGAA_iii tRNA yes 291 43 57 1394.887044 1251.116868 1323.001956 3.121560486 0.536376 40 25 20211 YDR059C spliced yes 40 25 39 67.844567 325.793617 196.819092 2.294067224 0.015013 40 26 19260 YPL143W intron no 625 81 102 31.150437 303.659812 167.4051245 2.223768748 -0.044558 40 27 16422 YER074W 5_exon no 566 1 21 30.922428 308.425909 169.6741685 2.22961573 -0.080903 40 28 123 Arg1 ArgACG_i 5_flank/tRNA5 no 273 32.825551 287.611288 160.2184195 2.204712443 0.110109 40 29 2343 Phe3 PheGAA_iii intron/tRNA no 291 i4 40 34.780296 274.77307 154.776683 2.189705535 0.254587 40 30 13731 MT_COB exon1 yes 7308 151 168 67.147266 344.5764 205.861833 2.313575835 -0.127551 40 31 6265 snR42 snR42 yes 551 106 122 36.839389 284.395805 160.617597 2.205793124 0.214158 40 32 13273 MT_COX1 exon5a yes 13084 8296 8315 30.681362 295.854291 163.2678265 2.212900611 -0.012456 40 33 20825 YKR057W spliced yes 40 21 37 30.793706 263.586497 147.1901015 2.167878605 0.167326 40 34 12669 MT_15S 3_flank no 1848 1786 1800 41.428713 323.676565 182.552639 2.261388116 -0.112568 40 35 9776 RUF4 RUF4 yes 988 656 671 81.870407 348.463288 215.1668475 2.332775357 -0.05564 40 36 21019 YMR033W spliced yes 40 21 38 41.673583 314.236499 177.955041 2.250310295 -0.030539 40 37 20058 YBR255C-A spliced yes 40 5 26 31.140312 316.047888 173.5941 2.239534961 -0.118518 40 38 16831 YGL178W intron no 740 401 420 31.157384 294.223854 162.690619 2.211362512 0.013795 40 39 2740 Pro5 ProTGG_iv tRNA yes 303 51 65 43.876573 292.890888 168.3837305 2.226300127 0.169753 40 40 14449 MT_21S 21S_rRNA3 yes 4639 946 970 31.125876 288.607963 159.8669195 2.203758607 0.048221 40 41 10399 RUF8 5_flank no 1151 37.408968 284.99571 161.202339 2.207371339 0.215304 40 42 18951 YOL127W intron no 514 201 218 33.086452 333.909737 183.4980945 2.263631559 -0.226988 40 43 1766 Leu7 LeuTAA 3_flank no 284 32.946897 332.692087 182.819492 2.262022498 -0.219709 40 44 1092 Gly4 GlyTCC 5_flank no 272 55.823831 358.079616 206.9517235 2.315869048 -0.29725 40 45 10896 "rRNA(18S,5.8S,25S)" 18S yes 7956 1366 1381 275.237674 482.340315 378.7889945 2.578397352 0.233057 40 46 2507 Pro1 ProAGG tRNA yes 272 26 38 36.498249 279.429352 157.9638005 2.198557574 0.253845 40 47 16439 YER074W intron no 566 341 361 32.183882 354.350526 193.267204 2.286158164 -0.391512 40 48 3524 Tyr1 TyrGTA_i 3_flank no 289 32.00638 268.951271 150.4788255 2.177475393 0.20051 40 49 20430 YGL033W spliced yes 40 17 35 33.866585 316.64199 175.2542875 2.243668652 -0.086113 40 50 14216 MT_ATP9 ATP9 yes 431 136 153 31.685823 297.65257 164.6691965 2.216612366 0.010025 40 51 2399 Phe4 PheGAA_iv intron/tRNA no 291 i9 42 45.683137 315.121139 180.402138 2.25624168 -0.024792 40 52 5065 snR11 5_flank no 458 49.646322 305.257216 177.451769 2.249080333 0.079592 40 53 2555 Pro2 ProTGG_i tRNA yes 303 11 29 31.554365 282.349472 156.9519185 2.195766629 0.102864 40 54 7787 snoRNA cluster1 intergenic/snR75 no 1574 731 750 35.733041 326.660048 181.1965445 2.258149911 -0.154616 40 55 7218 snR64 3_flank no 301 31.910612 275.004601 153.4576065 2.18598842 0.163116 40 56 13903 MT_COB exon3 yes 7308 2731 2749 32.144968 298.394846 165.269907 2.218193783 0.020462 40 57 1825 Leu8 LeuTAG_i 3_flank no 301 34.383866 330.55618 182.470023 2.261191527 -0.191258 40 58 8280 snoRNA cluster4 intergenic no 638 186 207 28.274643 289.797043 159.035843 2.201495015 -0.091517 40 59 17571 YJL189W intron/exon no 486 421 438 38.488898 278.441559 158.4652285 2.199933981 0.284585 40 60 2496 Pro1 ProAGG 5_flank no 272 42.343861 287.188781 164.766321 2.216868445 0.220706 40 61 8510 snR19 / U1 RNA U1 yes 868 46 65 29.804396 301.320633 165.5625145 2.218962014 -0.076446 40 62 2419 Phe4 PheGAA_iv 3_flank no 291 39.604965 265.897704 152.7513345 2.183985013 0.410341 40 63 20133 YDL083C spliced yes 40 5 17 84.45971 302.665575 193.5626425 2.286821542 0.293927 40 64 7747 snoRNA cluster1 intergenic/snR76 no 1574 531 550 29.285184 308.8059 169.045542 2.228003722 -0.139976 40 65 1496 Leu3 LeuCAA_iii 5_flank no 314 54.295972 328.057689 191.1768305 2.281435257 -0.08384 40 66 5973 snR36 snR36 yes 555 321 338 29.404657 304.813181 167.108919 2.22299963 -0.111763 40 67 16667 YFR032C intron no 431 221 240 31.546381 305.536589 168.541485 2.226706816 -0.042713 40 68 77 Ala2 AlaTGC tRNA yes 273 21 33 29.677043 264.312136 146.9945895 2.16730135 0.106274 40 69 20510 YGR029W spliced yes 40 1 17 37.869207 289.370406 163.6198065 2.213835875 0.18272 40 70 4188 telomerase RNA 5_flank no 1501 31.826419 297.843398 164.8349085 2.217049191 0.013469 40 71 6168 snR40 5_flank no 297 27.730684 300.993773 164.3622285 2.215802021 -0.172181 40 72 2382 Phe4 PheGAA_iv 5_flank no 291 29.609367 296.924183 163.266775 2.212897814 -0.056239 40 73 3163 Ser5 SerTGA 5_flank no 282 31.407581 301.416811 166.412196 2.221185152 -0.022323 40 74 20161 YDL130W spliced yes 40 17 29 67.174282 309.310554 188.242418 2.274717493 0.139004 40 75 19925 YBL018C spliced yes 40 1 22 28.024685 319.698172 173.8614285 2.240203244 -0.24974 40 76 7411 snR69 5_flank no 301 34.793492 274.379684 154.586588 2.189171812 0.257621 40 77 2070 Lys4 LysTTT_ii tRNA yes 296 16 30 48.577501 319.256125 183.916813 2.264621433 -0.044118 40 78 2357 Phe3 PheGAA_iii 3_flank no 291 30.918676 304.620401 167.7695385 2.22471311 -0.058171 40 79 4157 SRP 3_flank no 875 50.906083 268.717207 159.811645 2.203608422 0.427198 40 80 2906 Pro8 ProTGG_vii tRNA yes 305 i15 i31 90.004527 322.181454 206.0929905 2.314063221 0.179435 40 81 19375 YPR043W intron no 503 81 96 51.44301 320.451105 185.9470575 2.26938931 -0.039128 40 82 18459 YMR143W intron no 644 181 198 27.491408 310.461299 168.9763535 2.227825934 -0.226886 40 83 17780 YKL180W intron no 406 261 280 27.480015 287.26285 157.3714325 2.196925898 -0.124114 40 84 16974 YGR034W intron no 454 261 280 27.360412 294.962167 161.1612895 2.207260734 -0.166112 40 85 15979 YDL136W intron no 505 161 178 38.996751 292.582348 165.7895495 2.219557151 0.1612 40 86 21669 copy of SH9619 no 631 32.676707 299.27717 165.9769385 2.22004775 0.032158 40 87 11631 "rRNA(18S,5.8S,25S)" 25S yes 7956 5041 5058 30.295737 294.536928 162.4163325 2.2106297 -0.017447 40 88 8377 snoRNA cluster 5 5_flank no 586 51 68 27.933853 304.541555 166.237704 2.220729532 -0.176442 40 89 21937 copy of SH19620 no 401 34.948903 271.260734 153.1048185 2.184988859 0.283324 40 90 21150 YNL246W spliced yes 40 21 38 41.757091 335.036919 188.397005 2.275073994 -0.206065 40 91 18512 YMR201C exon/intron no 184 41 57 42.934894 334.794973 188.8649335 2.27615133 -0.199899 40 92 1119 Gly4 GlyTCC tRNA/3_flank no 272 35.17993 284.08506 159.632495 2.203121302 0.197775 40 93 2546 Pro2 ProTGG_i 5_flank no 303 37.442667 315.76169 176.6021785 2.246996057 -0.055539 40 94 18381 YMR116C intron no 373 121 138 34.508709 291.747709 163.128209 2.212529068 0.124023 40 95 55 Ala2 AlaTGC 5_flank no 273 32.598946 281.045091 156.8220185 2.195407039 0.145397 40 96 21045 YMR142C spliced yes 40 5 22 39.518985 281.849406 160.6841955 2.205973163 0.265458 40 97 4160 SRP 3_flank no 875 41.26535 277.514027 159.3896885 2.202460222 0.314099 40 98 19217 YPL081W intron no 601 501 517 36.05307 328.503544 182.278307 2.260734986 -0.169526 40 99 12348 5S rRNA NTS2 no 1420 696 710 104.840548 340.394121 222.6173345 2.347558978 0.144161 40 100 17019 YGR148C intron no 479 301 318 29.163869 253.970466 141.5671675 2.150962543 0.123875 40 101 2603 Pro3 ProTGG_ii 5_flank no 303 30.983206 238.205578 134.594392 2.129026965 0.302465 40 102 5863 snR35 snR35 yes 740 501 518 31.066451 292.235272 161.6508615 2.208578023 0.02323 40 103 10419 RUF8 RUF8 yes 1151 21 40 31.159258 362.320566 196.739912 2.293892473 -0.456615 40 104 21041 YMR133W spliced yes 40 13 30 38.443939 446.081434 242.2626865 2.384286529 -0.981813 41 2 8171 snoRNA cluster 3; snR70 yes 743 366 383 30.504535 327.915023 179.209779 2.253361704 -0.215858 41 3 9733 RUF4 RUF4 yes 988 441 457 39.065306 294.083878 166.574592 2.221608758 0.147058 41 4 12740 MT_COX1 ai1 no 13084 301 317 32.882211 303.91058 168.3963955 2.226332791 0.003092 41 5 18807 YNL301C intron/exon no 532 481 495 179.56923 718.290807 448.9300185 2.652178646 -0.944244 41 6 4497 U3b (snR17b) U3b yes 662 41 60 39.346464 337.502986 188.424725 2.27513789 -0.234649 41 7 18553 YMR230W intron no 510 441 457 28.824299 306.896216 167.8602575 2.224947885 -0.145119 41 8 21473 copy of SH1243 no 333 32.947601 294.972212 163.9599065 2.214737662 0.067456 41 9 10572 RUF8 RUF8 yes 1151 786 802 34.900298 305.153095 170.0266965 2.230517117 0.017672 41 10 16871 YGL187C intron no 442 281 297 31.591054 300.160067 165.8755605 2.219782403 -0.008548 41 11 7298 snR66 5_flank no 286 30.347872 338.726327 184.5370995 2.26608369 -0.298155 41 12 11667 "rRNA(18S,5.8S,25S)" 25S yes 7956 5221 5234 36.267249 293.773529 165.020389 2.217537607 0.127502 41 13 3661 Val2 ValAAC_ii tRNA yes 274 45 57 72.025484 372.389007 222.2072455 2.346758216 -0.280587 41 14 1933 Lys1 LysCTT_i 3_flank no 272 31.791923 302.54959 167.1707565 2.223160308 -0.016529 41 15 16160 YDR129C intron no 211 121 142 31.719568 308.446283 170.0829255 2.230660717 -0.054447 41 16 6529 snR46 snR46 yes 397 136 156 29.753164 318.662579 174.2078715 2.241067775 -0.18127 41 17 3020 Ser2 SerAGA_ii tRNA yes 282 52 64 73.995384 314.882613 194.4389985 2.288783375 0.135403 41 18 3126 Ser4 SerGCT tRNA yes 301 36 i16 30.232661 297.993285 164.112973 2.215142913 -0.041103 41 19 5161 snR13 5_flank no 324 30.600508 282.964127 156.7823175 2.19529708 0.063083 41 20 2242 Phe1 PheGAA_i tRNA/3_flank no 292 35.176387 300.465958 167.8211725 2.224846751 0.059189 41 21 5657 snR34 snR34 yes 750 206 224 33.392545 314.919736 174.1561405 2.240938792 -0.078471 41 22 1753 Leu7 LeuTAA tRNA yes 284 50 64 30.384246 277.324026 153.854136 2.187109176 0.078874 41 23 7631 snR189 3_flank no 389 31.494195 308.635975 170.065085 2.23061516 -0.063025 41 24 6210 snR40 3_flank no 297 35.686001 278.128779 156.90739 2.195643398 0.256055 41 25 820 Glu1 GluCTC 3_flank no 272 31.267311 279.643294 155.4553025 2.19160554 0.111052 41 26 7193 snR64 snR64 yes 301 31 47 59.725821 332.575482 196.1506515 2.292589755 -0.08631 41 27 2190 Met2 MetCAT_ii 3_flank no 272 30.915807 300.452468 165.6841375 2.219280931 -0.032902 41 28 5001 snR10 snR10 yes 445 36 51 34.960114 304.082203 169.5211585 2.229223912 0.027069 41 29 16074 YDR025W 5_exon no 439 21 35 47.414628 298.843078 173.128853 2.238369452 0.125614 41 30 3582 Val1 ValAAC_i 5_flank no 274 28.579452 328.784688 178.68207 2.252080975 -0.280871 41 31 1817 Leu8 LeuTAG_i 3_flank no 301 34.841202 284.807031 159.8241165 2.203642312 0.187496 41 32 19171 YPL079W intron no 521 101 120 32.819544 321.972165 177.3958545 2.248943467 -0.140371 41 33 8957 snR17a / U3a U3a yes 690 71 88 30.820391 306.554291 168.687341 2.227082493 -0.073147 41 34 696 Gln3 GlnTTG_ii tRNA yes 272 11 28 33.019483 312.750096 172.8847895 2.237756785 -0.066038 41 35 13580 MT_COX1 exon6 yes 13084 12901 12920 33.122959 312.961351 173.042155 2.238151915 -0.066411 41 36 9591 RUF3 RUF3 yes 631 341 358 45.927689 301.388828 173.6582585 2.239695441 0.097808 41 37 18892 YOL120C exon/intron no 547 41 58 33.278053 291.427152 162.3526025 2.210459255 0.100139 41 38 16308 YDR450W intron no 535 441 458 30.143122 288.970451 159.5567865 2.202915281 0.011714 41 39 3296 Thr2 ThrCGT 3_flank no 272 33.337006 289.877255 161.6071305 2.208460519 0.111805 41 40 20866 YLR093C spliced yes 40 17 35 43.952673 309.799804 176.8762385 2.247669494 0.016048 41 41 8412 snoRNA cluster 5 snR190 yes 586 226 244 31.157152 326.842873 179.0000125 2.252853061 -0.199 41 42 14492 MT_21S 21S_rRNA3 yes 4639 1591 1619 31.067849 328.496368 179.7821085 2.25474647 -0.212659 41 43 7212 snR64 3_flank no 301 30.936702 272.864789 151.9007455 2.181559905 0.128457 41 44 20823 YKR057W spliced yes 40 13 29 32.864513 322.770813 177.817663 2.249974898 -0.145927 41 45 19470 ADH1 ADH1 yes 400 101 120 30.600443 290.113722 160.3570825 2.205088146 0.020862 41 46 10317 RUF7 RUF7 yes 700 196 212 37.678585 260.647542 149.1630635 2.173661294 0.435338 41 47 12557 MT_15S 15S yes 1848 106 127 32.342795 359.929178 196.1359865 2.292557284 -0.434708 41 48 8024 snoRNA cluster 2 snR55 yes 739 356 373 34.256164 286.096828 160.176496 2.204598789 0.164376 41 49 423 Asp1 AspGTC_i 5_flank no 271 34.127316 316.514378 175.320847 2.24383356 -0.081941 41 50 3608 Val1 ValAAC_i tRNA yes 274 35 49 89.109463 281.109704 185.1095835 2.267428904 0.497236 41 51 4961 snR9 3_flank no 387 31.909582 276.260109 154.0848455 2.187759927 0.154695 41 52 12561 MT_15S 15S yes 1848 166 187 29.865256 293.292168 161.578712 2.208384142 -0.024594 41 53 48 Ala1 AlaAGC 3_flank no 273 27.891131 321.047072 174.4691015 2.241718524 -0.26248 41 54 15080 MT_COX 2; ORF1 ORF1exon1 yes 2427 1801 1820 30.046563 327.46414 178.7553515 2.252259052 -0.221187 41 55 5051 snR10 3_flank no 445 88.884212 333.318567 211.1013895 2.324491092 0.092971 41 56 110 Arg1 ArgACG_i 5_flank no 273 32.450168 282.063709 157.2569385 2.196609817 0.13396 41 57 5495 snR32 snR32 yes 388 136 153 34.644611 307.770889 171.20775 2.23352342 -0.006483 41 58 15149 MT_Thr1 tRNA/3_flank no 272 166 192 28.446893 319.185738 173.8163155 2.24009054 -0.231172 41 59 13707 MT_Glu (and 5_flank processing site for COB) tRNA yes 368 136 153 32.480367 302.332965 167.406666 2.223772747 0.007161 41 60 9734 RUF4 RUF4 yes 988 446 462 32.268991 295.522351 163.895671 2.214567483 0.042293 41 61 11031 "rRNA(18S,5.8S,25S)" 18S yes 7956 2041 2054 2652.933958 2804.982828 2728.958393 3.435996914 0.086739 41 62 13414 MT_COX1 intronic no 13084 10411 10435 27.712403 304.317008 166.0147055 2.220146559 -0.187827 41 63 17349 YIL018W intron no 500 381 402 29.548358 296.893802 163.22108 2.212776247 -0.058205 41 64 10587 RUF8 RUF8 yes 1151 861 876 51.554637 309.078929 180.316783 2.256036151 0.056012 41 65 9446 RUF2 RUF2 yes 468 71 83 47.513403 299.286194 173.3997985 2.239048588 0.121846 41 66 20289 YDR471W spliced yes 40 25 39 41.562026 302.287288 171.924657 2.235338167 0.075841 41 67 16316 YDR471W intron no 484 81 101 31.614236 342.581002 187.097619 2.272068261 -0.309193 41 68 16599 YFL034C intron no 421 341 358 29.689295 305.847388 167.7683415 2.224710011 -0.10794 41 69 12067 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7221 7239 35.795658 309.2616 172.528629 2.236861171 -0.004891 41 70 4989 snR10 5_flank no 445 33.752735 294.831826 164.2922805 2.215617158 0.088863 41 71 949 Gly1 GlyCCC_i 5_flank/tRNA no 272 64.049569 345.380418 204.7149935 2.311149652 -0.153099 41 72 6262 snR42 snR42 yes 551 91 107 41.463673 290.161665 165.812669 2.21961771 0.190013 41 73 18989 YOR096W 3_exon no 501 461 475 75.198151 333.582423 204.390287 2.310460253 0.0041 41 74 6103 snR37 3_flank no 586 79.394176 345.106424 212.2503 2.326848313 -0.049532 41 75 15391 YBL040C intron no 197 101 118 50.28568 308.498965 179.3923225 2.253803852 0.054849 41 76 10608 RUF8 3_flank no 1151 28.574676 270.736743 149.6557095 2.17509329 0.015479 41 77 3422 Trp1 TrpCCA 5_flank no 306 28.524496 308.148319 168.3364075 2.226178055 -0.163533 41 78 9991 RUF5-1 RUF5-1/3_flank no 975 34.391652 301.935584 168.163618 2.225732043 0.037789 41 79 21620 copy of SH7515 no 284 34.533578 286.743722 160.63865 2.205850046 0.167076 41 80 18052 YLR333C intron no 523 321 337 54.430693 309.517451 181.974072 2.260009513 0.06749 41 81 2144 Met1 MetCAT_i 3_flank no 273 30.989005 289.324303 160.156654 2.204544987 0.039055 41 82 18847 YNL312W intron no 208 121 141 29.15269 306.475605 167.8141475 2.224828571 -0.130764 41 83 9395 RUF1 3_flank no 750 33.173322 301.507671 167.3404965 2.223601053 0.02636 41 84 20038 YBR186W spliced yes 40 17 32 51.018496 315.14045 183.079473 2.262639654 0.002175 41 85 2354 Phe3 PheGAA_iii 3_flank no 291 32.947929 298.799248 165.8735885 2.21977724 0.043732 41 86 21818 copy of SH15703 no 521 32.656205 293.709045 163.182625 2.212673915 0.066081 41 87 17586 YJL191W intron no 508 241 260 32.268591 332.776723 182.522657 2.261316782 -0.228951 41 88 5232 snR30 snR30 yes 801 11 25 49.955259 286.980595 168.467927 2.226517232 0.244149 41 89 19913 YAL003W spliced yes 40 9 26 37.876344 313.238817 175.5575805 2.244419587 -0.032074 41 90 16750 YGL076C intron no 559 421 440 28.95847 313.271487 171.1149785 2.233288027 -0.178125 41 91 11371 "rRNA(18S,5.8S,25S)" 25S yes 7956 3741 3758 41.211651 284.245453 162.728552 2.21146376 0.247015 41 92 400 Asn1 AsnGTT 3_flank no 274 31.65304 369.01729 200.335165 2.301757188 -0.50635 41 93 12267 5S rRNA NTS2 no 1420 291 309 34.814527 317.040684 175.9276055 2.245333992 -0.077792 41 94 17585 YJL191W intron no 508 221 238 34.517681 283.428592 158.9731365 2.201323743 0.189569 41 95 6857 snR56 5_flank no 288 34.341271 274.596677 154.468974 2.188841262 0.242504 41 96 14117 MT_COB intronic no 7308 5941 5965 27.299394 312.78016 170.039777 2.230550527 -0.247685 41 97 139 Arg1 ArgACG_i tRNA/3_flank no 273 27.281986 288.955291 158.1186385 2.198983066 -0.143174 41 98 15957 YDL130W intron no 401 121 137 29.02543 306.255952 167.640691 2.224379442 -0.134012 41 99 4559 U3b (snR17b) U3b yes 662 351 367 30.784698 278.038851 154.4117745 2.188680414 0.09579 41 100 12460 5S rRNA 5S yes 1420 1256 1272 55195.09148 10021.00136 32608.04642 4.513324781 1.684426 41 101 15107 MT_COX 2; ORF1 ORF2exon2 yes 2427 2206 2223 29.984413 236.478159 133.231286 2.12460622 0.252592 41 102 19128 YPL075W intron no 851 81 97 46.810903 322.192805 184.501854 2.266000735 -0.077388 41 103 10206 RUF6 RUF6 yes 1251 876 896 30.990452 373.302143 202.1462975 2.305665791 -0.540538 41 104 18884 YOL047C exon/intron no 163 41 58 32.848621 368.549404 200.6990125 2.302545236 -0.49942 42 2 12515 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 121 149 31.376948 394.93147 213.154209 2.328693913 -0.696781 42 3 19504 YPT1 YPT1 yes 402 381 393 45.031701 295.616516 170.3241085 2.231276124 0.148046 42 4 17536 YJL177W intron no 417 121 142 30.469664 358.57078 194.520222 2.288964757 -0.437199 42 5 7892 snoRNA cluster1 intergenic no 1574 1256 1272 36.743821 282.448989 159.596405 2.203023104 0.230058 42 6 17102 YHL001W intron no 498 421 443 28.452001 286.752171 157.602086 2.197561961 -0.067736 42 7 13949 MT_COB bi3 no 7308 3421 3438 33.605293 298.580412 166.0928525 2.220350944 0.055827 42 8 5151 snR13 5_flank no 324 59.507303 343.835749 201.671526 2.304644585 -0.17181 42 9 17526 YJL136C intron no 560 481 502 30.324139 295.521063 162.922601 2.211981335 -0.02261 42 10 7506 snR71 3_flank no 290 29.152304 293.210055 161.1811795 2.20731433 -0.059612 42 11 13544 MT_COX1 intronic no 13084 12361 12380 32.030251 332.743471 182.386861 2.260993549 -0.231774 42 12 5348 snR30 snR30/3_flank no 801 39.933947 302.490722 171.2123345 2.233535049 0.070313 42 13 5597 snR34 5_flank no 750 33.647393 300.620072 167.1337325 2.223064112 0.039521 42 14 14344 MT_VAR1 VAR1/3_flank no 1467 1366 1387 27.494891 291.751906 159.6233985 2.203096553 -0.143921 42 15 66 Ala2 AlaTGC 5_flank no 273 41.474997 262.765157 152.120077 2.182186537 0.458732 42 16 2562 Pro2 ProTGG_i tRNA-intron no 303 i20 i27 57.747832 333.930756 195.839294 2.291899835 -0.108613 42 17 5412 snR31 snR31 yes 425 126 142 34.772271 285.301444 160.0368575 2.204220015 0.18239 42 18 11898 "rRNA(18S,5.8S,25S)" 25S yes 7956 6376 6391 36760.78743 23068.33555 29914.56149 4.475882641 -0.197735 42 19 14142 MT_COB intronic no 7308 6316 6340 32.462229 333.775323 183.118776 2.262732877 -0.233879 42 20 9515 RUF3 5_flank no 631 30.758259 267.448678 149.1034685 2.173487746 0.146166 42 21 1049 Gly3 GlyGCC 5_flank no 271 41.608388 326.739904 184.174146 2.265228665 -0.137789 42 22 13454 MT_COX1 intronic no 13084 11011 11033 29.111554 293.211181 161.1613675 2.207260944 -0.061791 42 23 12617 MT_15S 15S yes 1848 1006 1032 29.169146 315.203671 172.1864085 2.235998868 -0.181876 42 24 12884 MT_COX1 ai1 no 13084 2461 2482 29.135296 319.861808 174.498552 2.241791828 -0.210099 42 25 20025 YBR119W spliced yes 40 13 29 37.508431 298.895233 168.201832 2.225830722 0.098002 42 26 19534 CBP1 1.2 CBP1 1.2 yes 401 181 197 43.710916 316.465467 180.0881915 2.255485237 -0.04313 42 27 14689 MT_21S 3_flank no 4639 4546 4568 28.829783 317.74193 173.2858565 2.238763117 -0.208864 42 28 5345 snR30 snR30 yes 801 576 593 32.929701 287.498254 160.2139775 2.204700402 0.114141 42 29 19053 YOR234C intron no 627 441 455 82.265609 351.927712 217.0966605 2.336653143 -0.076239 42 30 19222 YPL090C 5_exon no 494 1 18 34.919104 311.561208 173.240156 2.238648566 -0.033464 42 31 9124 snR14 / U4 RNA 3_flank no 360 41.197004 298.968569 170.0827865 2.230660362 0.105881 42 32 16263 YDR424C intron no 196 121 137 32.852029 283.747963 158.299996 2.199480904 0.13585 42 33 9581 RUF3 RUF3 yes 631 291 307 34.998041 285.712606 160.3553235 2.205083382 0.181511 42 34 15740 YCR028C intron no 183 61 82 30.877938 310.450957 170.6644475 2.232143059 -0.094455 42 35 5570 snR33 snR33 yes 383 136 153 33.059764 275.137393 154.0985785 2.187798633 0.19917 42 36 13764 MT_COB intronic no 7308 646 672 28.935659 325.632607 177.284133 2.248669868 -0.2502 42 37 4626 snR3 snR3 yes 395 46 63 31.120375 282.415247 156.767811 2.195256894 0.087973 42 38 8467 snoRNA cluster 5 3_flank no 586 501 520 33.303308 279.355252 156.32928 2.194040328 0.178823 42 39 20325 YER056C-A spliced yes 40 17 31 108.493855 346.563809 227.528832 2.357036437 0.125979 42 40 352 Arg5 ArgTCT 3_flank no 272 517.557317 680.947964 599.2526405 2.777609956 0.317621 42 41 18497 YMR194W intron no 563 301 322 33.318041 388.998346 211.1581935 2.324607938 -0.647838 42 42 1581 Leu4 LeuCAA_iv tRNA yes 314 43 51 1800.562071 943.207498 1371.884785 3.137317639 1.316163 42 43 19968 YBL072C spliced yes 40 5 21 111.825985 395.773652 253.7998185 2.404491307 -0.14527 42 44 8736 LSR1 / U2 RNA U2 yes 1375 321 340 35.024717 299.305624 167.1651705 2.223145796 0.066962 42 45 14373 MT_ORF9; ORF10 ORF10 yes 578 361 380 32.756153 280.077492 156.4168225 2.194283459 0.156771 42 46 1177 His1 HisGTG 3_flank no 272 66.023868 319.066979 192.5454235 2.284533201 0.055061 42 47 12575 MT_15S 15S yes 1848 376 390 89.441151 315.169341 202.305246 2.306007145 0.227647 42 48 19013 YOR182C intron no 511 141 160 30.319241 315.849571 173.084406 2.238257942 -0.145264 42 49 7377 snR68 snR68 yes 336 106 123 32.307572 300.475016 166.391294 2.221130599 0.012941 42 50 20971 YML034W spliced yes 40 5 24 32.259179 314.308126 173.2836525 2.238757594 -0.087964 42 51 13693 MT_ORF 5 3_flank no 331 241 267 28.141629 306.585151 167.36339 2.223660464 -0.173834 42 52 3517 Tyr1 TyrGTA_i 3_flank no 289 34.318534 323.782477 179.0505055 2.252975551 -0.135735 42 53 1843 Leu9 LeuTAG_ii 5_flank no 301 30.28469 292.831365 161.5580275 2.208328542 -0.007135 42 54 9632 RUF4 5_flank no 988 63.651692 274.791397 169.2215445 2.228455655 0.421985 42 55 6639 snR48 snR48 yes 313 21 40 30.540562 292.123998 161.33228 2.207721271 0.006103 42 56 4671 snR3 3_flank no 395 39.002313 299.692043 169.347178 2.228777964 0.094129 42 57 9146 snR7 U5 RNA U5 yes 415 1 17 34.903847 302.123954 168.5139005 2.226635731 0.042369 42 58 16761 YGL087C intron no 185 81 100 34.882112 313.45618 174.169146 2.240971222 -0.048889 42 59 4056 SRP SRP yes 875 171 190 30.597041 290.93591 160.7664755 2.206195491 0.015536 42 60 20835 YKR095W-A spliced yes 40 13 30 34.53484 306.607772 170.571306 2.231905975 0.001561 42 61 14382 MT_ORF9; ORF10 3_flank no 578 496 520 30.170071 305.666943 167.918507 2.225098564 -0.090079 42 62 16176 YDR305C intron no 189 81 95 70.923287 298.340127 184.631707 2.266306285 0.250715 42 63 18297 YML073C intron no 515 141 158 37.85311 291.956671 164.9048905 2.217233535 0.160554 42 64 20196 YDR005C spliced yes 40 13 32 29.648699 354.670091 192.159395 2.283661623 -0.421476 42 65 9317 RUF1 RUF1 yes 750 161 178 31.620744 317.147198 174.383971 2.241506563 -0.118464 42 66 15158 MT_Val 5_flank no 276 46 69 29.625798 356.598885 193.1123415 2.28581003 -0.4352 42 67 7945 snoRNA cluster1 3_flank no 1574 1521 1538 29.663245 300.418368 165.0408065 2.217591337 -0.075881 42 68 5770 snR35 snR35 yes 740 36 53 31.706744 295.734263 163.7205035 2.214103072 0.022619 42 69 7426 snR69 snR69 yes 301 31 47 69.275381 320.794341 195.034861 2.290112245 0.061899 42 70 3121 Ser4 SerGCT tRNA yes 301 11 25 918.899301 704.787719 811.84351 2.909472323 0.943943 42 71 7953 snoRNA cluster 2 5_flank no 739 1 18 29.468882 293.77067 161.619776 2.208494501 -0.045374 42 72 2585 Pro2 ProTGG_i 3_flank no 303 29.25038 310.805418 170.027899 2.230520188 -0.1531 42 73 9397 RUF1 3_flank no 750 32.921124 304.007946 168.464535 2.226508488 0.002791 42 74 1762 Leu7 LeuTAA 3_flank no 284 28.704057 303.560783 166.13242 2.220454391 -0.129886 42 75 11652 "rRNA(18S,5.8S,25S)" 25S yes 7956 5146 5161 49.842455 280.427464 165.1349595 2.217839024 0.307188 42 76 6968 snR60 5_flank no 304 79.582301 301.815437 190.698869 2.280348117 0.271732 42 77 12671 MT_15S 3_flank no 1848 1816 1828 35.931278 312.10606 174.018669 2.240595843 -0.026765 42 78 18245 YML034W 5_exon no 226 1 20 28.278598 318.747896 173.513247 2.239332637 -0.234841 42 79 3329 Thr3 ThrTGT_i 5_flank/tRNA no 272 35.133063 301.747011 168.440037 2.226445328 0.048164 42 80 20040 YBR189W spliced yes 40 1 17 65.58946 318.618974 192.104217 2.283536898 0.055759 42 81 19262 YPL143W intron no 625 121 140 32.605991 338.387153 185.496572 2.268335888 -0.265962 42 82 13352 MT_COX1 intronic no 13084 9481 9502 30.819824 294.548911 162.6843675 2.211345823 0.000388 42 83 10216 RUF6 RUF6 yes 1251 926 945 30.925783 302.370178 166.6479805 2.221800055 -0.04428 42 84 11189 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2831 2849 30.944086 294.686405 162.8152455 2.211695068 0.00373 42 85 2004 Lys3 LysTTT_i 5_flank no 296 28.896997 297.847268 163.3721325 2.213177978 -0.094175 42 86 12816 MT_COX1 ai1 no 13084 1441 1462 28.712453 308.802437 168.757445 2.227262942 -0.160579 42 87 19767 Negative Control no 60 NA #VALUE! 36.157377 292.802222 164.4797995 2.216112568 0.13443 42 88 15309 YAL001C 3_exon no 190 161 178 29.979783 310.732042 170.3559125 2.231357211 -0.126946 42 89 1696 Leu6 LeuGAG tRNA yes 282 46 58 35.177505 302.198297 168.687901 2.227083934 0.044994 42 90 15139 MT_Thr1 5_flank no 272 16 44 25.377571 321.732514 173.5550425 2.239437236 -0.398687 42 91 14722 MT_Cys; His tRNACys yes 456 151 167 28.603859 287.848467 158.226163 2.199278297 -0.064547 42 92 8951 snR17a / U3a U3a yes 690 41 56 73.396627 360.739086 217.0678565 2.336595518 -0.195443 42 93 6625 snR48 5_flank no 313 36.721943 287.172627 161.947285 2.209373672 0.188823 42 94 17224 YHR041C 3_exon no 201 161 173 68.352114 307.605468 187.978791 2.274108852 0.15981 42 95 8284 snoRNA cluster4 intergenic no 638 206 225 27.462145 278.089149 152.775647 2.184054132 -0.08374 42 96 11232 "rRNA(18S,5.8S,25S)" ITS1/5.8S no 7956 3046 3067 858.886331 929.356613 894.121472 2.951396524 0.401215 42 97 489 Asp2 AspGTC_ii tRNA yes 272 6 23 71.295079 295.642271 183.468675 2.263561925 0.275309 42 98 9861 RUF5-1 RUF5-1 yes 975 111 131 30.820208 351.082002 190.951105 2.280922176 -0.380302 42 99 16803 YGL137W intron no 300 141 157 51.836641 347.925567 199.881104 2.30077174 -0.249805 42 100 5448 snR32 5_flank no 388 50.08488 267.947674 159.016277 2.201441581 0.432748 42 101 15454 YBL087C intron no 604 241 253 34.304913 249.779923 142.042418 2.152418057 0.406742 42 102 4217 telomerase RNA telomerase yes 1501 121 135 48.444141 329.247832 188.8459865 2.276107759 -0.126144 42 103 11724 "rRNA(18S,5.8S,25S)" 25S yes 7956 5506 5521 41.467897 316.241577 178.854737 2.252500447 -0.048691 42 104 19940 YBL027W spliced yes 40 17 33 34.459935 345.323621 189.891778 2.278506161 -0.313173 43 2 4759 snR5 5_flank no 404 36.39422 342.090202 189.242211 2.277018013 -0.281901 43 3 10763 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 701 719 34.2945 323.49786 178.89618 2.252601067 -0.133852 43 4 7220 snR64 3_flank no 301 34.274177 308.194965 171.234571 2.23359145 -0.014337 43 5 12178 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7776 7798 28.096865 267.756979 147.926922 2.170047221 -0.001062 43 6 20955 YML024W spliced yes 40 13 30 52.719923 313.56878 183.1443515 2.262793529 0.02435 43 7 16519 YER131W 5_exon no 461 1 22 28.023019 294.790678 161.4068485 2.207921958 -0.128157 43 8 5473 snR32 snR32 yes 388 26 43 29.986222 296.609464 163.297843 2.212980448 -0.04108 43 9 4575 U3b (snR17b) U3b yes 662 431 443 38.008264 282.588212 160.298238 2.204928749 0.24285 43 10 21710 copy of SH11290 no 7956 31.780234 301.401781 166.5910075 2.221651555 -0.009914 43 11 12251 5S rRNA NTS2 no 1420 211 225 37.667149 272.490141 155.078645 2.190551998 0.329044 43 12 21351 YPR132W spliced yes 40 21 33 53.580942 293.147596 173.364269 2.238959593 0.205179 43 13 3028 Ser2 SerAGA_ii 3_flank no 282 31.32467 302.021163 166.6729165 2.221865035 -0.028771 43 14 9725 RUF4 RUF4 yes 988 401 416 39.197366 279.536038 159.366702 2.202397585 0.282443 43 15 729 Gln4 GlnTTG_iii 5_flank no 272 82.173658 339.235323 210.7044905 2.323673791 0.009298 43 16 15846 YDL075W intron no 521 361 378 31.356492 296.282522 163.819507 2.214365615 0.00761 43 17 413 Asn1 AsnGTT 3_flank no 274 37.640879 312.633431 175.137155 2.243378291 -0.027238 43 18 13583 MT_COX1 exon6 yes 13084 12946 12963 31.942494 285.047215 158.4948545 2.200015168 0.098121 43 19 6793 snR50 3_flank no 290 34.385453 288.704126 161.5447895 2.208292955 0.148458 43 20 9891 RUF5-1 RUF5-1 yes 975 261 280 32.692299 300.108441 166.40037 2.221154288 0.02755 43 21 13690 MT_ORF 5 ORF5 yes 331 196 218 28.789932 299.90746 164.348696 2.215766263 -0.109121 43 22 3222 Thr1 ThrAGT 5_flank no 273 31.054699 286.38961 158.7221545 2.20063755 0.060037 43 23 15831 YDL075W intron no 521 61 80 41.712942 336.029715 188.8713285 2.276166035 -0.214331 43 24 21663 copy of SH9193 no 415 29.01127 276.213117 152.6121935 2.183589235 0.012372 43 25 14132 MT_COB intronic no 7308 6166 6194 31.072381 301.665236 166.3688085 2.221071906 -0.035044 43 26 3525 Tyr1 TyrGTA_i 3_flank no 289 33.113799 304.808963 168.961381 2.227787451 -0.001296 43 27 2140 Met1 MetCAT_i 3_flank no 273 35.153002 290.126943 162.6399725 2.211227292 0.145449 43 28 2300 Phe2 PheGAA_ii 3_flank no 292 37.197742 289.196352 163.197047 2.212712296 0.176799 43 29 9454 RUF2 RUF2 yes 468 111 128 32.949362 281.763378 157.35637 2.196884328 0.151862 43 30 1549 Leu4 LeuCAA_iv 5_flank no 314 35.003614 286.678068 160.840841 2.206396335 0.17324 43 31 10922 "rRNA(18S,5.8S,25S)" 18S yes 7956 1496 1515 2229.098691 6583.879387 4406.489039 3.644092694 -1.534443 43 32 5894 snR36 5_flank no 555 32.85046 313.314758 173.082609 2.238253433 -0.072621 43 33 19383 YPR043W intron no 503 241 258 32.847041 306.913785 169.880413 2.230143308 -0.021652 43 34 17412 YIL106W intron no 185 81 103 30.780805 289.22542 160.0031125 2.204128431 0.032645 43 35 3456 Trp1 TrpCCA 3_flank no 306 28.741173 299.739447 164.24031 2.215479756 -0.111009 43 36 17338 YIL018W intron no 500 161 176 103.281956 345.982464 224.63221 2.35147203 0.098017 43 37 14937 MT_Asn 3_flank no 271 181 207 31.000176 296.665675 163.8329255 2.214401186 -0.006704 43 38 14191 MT_COB exon6 yes 7308 7051 7070 31.087956 299.235462 165.161709 2.217909368 -0.019631 43 39 4505 U3b (snR17b) U3b yes 662 81 98 35.390003 271.417263 153.403633 2.185835645 0.295358 43 40 6812 snR52 5_flank no 292 39.6737 312.517238 176.095469 2.245748182 -0.021397 43 41 5593 snR33 3_flank no 383 35.407372 356.380272 195.893822 2.29202074 -0.398756 43 42 12016 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6966 6989 31.102214 300.38808 165.745147 2.219440821 -0.026231 43 43 8668 LSR1 / U2 RNA 5_flank no 1375 37.307727 292.871176 165.0894515 2.217719325 0.146816 43 44 18707 YNL130C intron no 541 221 238 38.185492 293.21755 165.701521 2.219326495 0.153221 43 45 7813 snoRNA cluster1 intergenic no 1574 861 880 36.958308 318.438045 177.6981765 2.249682971 -0.08031 43 46 2289 Phe2 PheGAA_ii intron/tRNA no 292 i4 39 30.571326 286.02175 158.296538 2.199471417 0.046022 43 47 13234 MT_COX1 ai4 no 13084 7711 7733 29.445597 338.833733 184.139665 2.265147349 -0.311436 43 48 20716 YJL041W spliced yes 40 21 38 40.777172 299.417797 170.0974845 2.230697891 0.10075 43 49 4642 snR3 snR3 yes 395 126 141 35.569864 294.643713 165.1067885 2.21776493 0.112153 43 50 9464 RUF2 RUF2 yes 468 161 180 32.47535 322.390281 177.4328155 2.249033944 -0.147944 43 51 15710 YBR220C intron no 521 361 373 89.538263 287.431571 188.484917 2.275276603 0.446222 43 52 7328 snR66 3_flank no 286 68.071092 309.532623 188.8018575 2.276006263 0.14268 43 53 8406 snoRNA cluster 5 snR190 yes 586 196 212 32.673561 303.741334 168.2074475 2.225845221 0.001833 43 54 8093 snoRNA cluster 2 3_flank no 739 701 716 32.7923 273.323396 153.057848 2.184855603 0.202866 43 55 13426 MT_COX1 intronic no 13084 10591 10615 28.72965 330.530945 179.6302975 2.254379589 -0.285151 43 56 13687 MT_ORF 5 ORF5 yes 331 151 168 33.002919 317.943946 175.4734325 2.244211372 -0.10695 43 57 18139 YLR406C intron no 449 161 173 49.911058 313.577904 181.744481 2.259461232 0.009906 43 58 4021 SRP 5_flank/SRP no 875 30.900251 283.70114 157.3006955 2.196730643 0.072197 43 59 5389 snR31 snR31 yes 425 11 27 45.459676 299.45764 172.458658 2.236685002 0.113982 43 60 17858 YKR095W 3_exon no 175 141 155 70.394051 318.359066 194.3765585 2.288643889 0.087408 43 61 1955 Lys2 LysCTT_ii 5_flank no 273 28.331379 300.231345 164.281362 2.215588295 -0.135505 43 62 13481 MT_COX1 intronic no 13084 11416 11442 28.126087 303.282888 165.7044875 2.21933427 -0.160271 43 63 9488 RUF2 3_flank no 468 40.183452 299.363361 169.7734065 2.229869663 0.099919 43 64 20945 YLR426W spliced yes 40 21 35 29.845813 272.971031 151.408422 2.180150033 0.07216 43 65 21291 YPL175W spliced yes 40 9 25 39.889662 324.092843 181.9912525 2.260050514 -0.121485 43 66 11035 "rRNA(18S,5.8S,25S)" 18S yes 7956 2061 2074 29.727984 299.115946 164.421965 2.215959834 -0.065605 43 67 5909 snR36 snR36 yes 555 1 17 43.865284 289.830467 166.8478755 2.222320681 0.198529 43 68 13842 MT_COB bi2 no 7308 1816 1835 35.731624 320.162714 177.947169 2.250291083 -0.098484 43 69 328 Arg5 ArgTCT 5_flank no 272 31.631401 285.609256 158.6203285 2.200358845 0.084275 43 70 6969 snR60 5_flank no 304 35.521414 282.643219 159.0823165 2.201621906 0.21435 43 71 2624 Pro3 ProTGG_ii tRNA yes 303 41 53 196.1419 446.847878 321.494889 2.507174073 0.065285 43 72 10925 "rRNA(18S,5.8S,25S)" 18S yes 7956 1511 1528 27817.89308 11988.15114 19903.02211 4.298919026 0.547934 43 73 3533 Tyr2 TyrGTA_ii 5_flank no 289 30.753797 291.163532 160.9586645 2.20671436 0.019432 43 74 10800 "rRNA(18S,5.8S,25S)" 5_ETS/18S no 7956 886 904 32.398374 294.647462 163.522918 2.213578628 0.051931 43 75 3032 Ser2 SerAGA_ii 3_flank no 282 38.890718 294.141628 166.516173 2.221456421 0.1461 43 76 13826 MT_COB bi2 no 7308 1576 1593 60.878255 347.718165 204.29821 2.310264561 -0.191024 43 77 3595 Val1 ValAAC_i 5_flank no 274 30.005223 277.710992 153.8581075 2.187120386 0.057513 43 78 8199 snoRNA cluster 3; intergenic no 743 506 524 43.449133 326.629885 185.039509 2.267264467 -0.1307 43 79 6452 snR45 snR45 yes 372 106 120 60.984691 292.787117 176.885904 2.247693225 0.245076 43 80 12628 MT_15S 15S yes 1848 1171 1194 28.349582 300.925189 164.6373855 2.216528461 -0.137581 43 81 13215 MT_COX1 ai4 no 13084 7426 7450 25.602016 324.68368 175.142848 2.243392407 -0.397164 43 82 20711 YJL041W spliced yes 40 1 17 28.635504 272.038866 150.337185 2.177066414 0.012393 43 83 6806 snR52 5_flank no 292 46.344205 358.963235 202.65372 2.30675458 -0.363888 43 84 16990 YGR118W intron no 420 141 163 28.780489 304.890956 166.8357225 2.222289046 -0.134637 43 85 5059 snR10 3_flank no 445 28.742397 290.560608 159.6515025 2.20317301 -0.069527 43 86 653 Gln2 GlnTTG_i tRNA yes 272 51 63 40.284678 294.85105 167.567864 2.224190734 0.142585 43 87 8819 LSR1 / U2 RNA U2 yes 1375 736 752 34.174275 284.749474 159.4618745 2.202656865 0.170568 43 88 13818 MT_COB bi2 no 7308 1456 1484 29.992114 326.590199 178.2911565 2.251129802 -0.218161 43 89 703 Gln3 GlnTTG_ii tRNA yes 272 46 58 35.24857 271.806613 153.5275915 2.186186437 0.288538 43 90 15575 YBR084C intron no 606 261 277 32.87501 301.863501 167.3692555 2.223675684 0.019704 43 91 13534 MT_COX1 intronic no 13084 12211 12228 32.386799 310.710487 171.548643 2.234387287 -0.057879 43 92 6906 snR56 3_flank no 288 28.338688 342.311888 185.325288 2.267934684 -0.36394 43 93 17633 YJR094W intron no 375 261 278 31.590371 311.745 171.6676855 2.234688552 -0.078295 43 94 2155 Met2 MetCAT_ii 5_flank no 272 71.527125 310.669628 191.0983765 2.281256997 0.154399 43 95 8683 LSR1 / U2 RNA U2 yes 1375 56 73 45.338361 288.256567 166.797464 2.222189443 0.218169 43 96 18745 YNL162W intron no 612 221 238 26.702918 268.828027 147.7654725 2.169572967 -0.095573 43 97 1885 Leu9 LeuTAG_ii 3_flank no 301 34.544419 249.352756 141.9485875 2.152131075 0.419831 43 98 2072 Lys4 LysTTT_ii tRNA/intron no 296 26 i4 36.237619 295.60536 165.9214895 2.219902638 0.111801 43 99 19458 CYC1 CYC1 yes 400 261 276 30.913763 270.297506 150.6056345 2.17784122 0.139892 43 100 4673 snR4 5_flank no 386 27.366134 278.89865 153.132392 2.185067066 -0.093181 43 101 18958 YOL127W intron no 514 341 359 34.311864 364.135927 199.2238955 2.299341428 -0.461779 43 102 21489 copy of SH2037 no 296 27.292518 325.757671 176.5250945 2.246806453 -0.311955 43 103 1988 Lys2 LysCTT_ii 3_flank no 273 177.600403 765.072273 471.336338 2.673330923 -1.074713 43 104 21560 copy of SH4990 no 445 29.013144 345.928056 187.4706 2.272933169 -0.368771 44 2 8732 LSR1 / U2 RNA U2 yes 1375 301 318 30.03597 300.725339 165.3806545 2.218484706 -0.064723 44 3 8574 snR19 / U1 RNA U1 yes 868 366 380 56.824198 366.316431 211.5703145 2.325454732 -0.348414 44 4 7817 snoRNA cluster1 intergenic no 1574 881 898 33.996135 339.104177 186.550156 2.270795617 -0.263629 44 5 17139 YHR010W intron no 661 501 520 27.819625 275.185892 151.5027585 2.18042054 -0.049142 44 6 1244 Ile2 IleTAT_i 5_flank no 333 63.361108 297.547444 180.454276 2.256367177 0.216181 44 7 14719 MT_Cys; His tRNACys yes 456 106 125 29.684221 284.023014 156.8536175 2.195494539 0.010873 44 8 11992 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6846 6863 31.601147 293.299166 162.4501565 2.210720134 0.034359 44 9 18312 YML073C intron no 515 441 462 33.500974 310.512693 172.0068335 2.235545701 -0.0423 44 10 8305 snoRNA cluster4 intergenic no 638 311 323 57.476673 337.119151 197.297912 2.295122489 -0.13432 44 11 6423 snR45 5_flank no 372 29.291484 280.441087 154.8662855 2.189956882 0.007079 44 12 12366 5S rRNA NTS2 no 1420 786 802 31.176454 302.766685 166.9715695 2.222642529 -0.038263 44 13 19714 Negative Control no 60 NA #VALUE! 59.959141 349.881944 204.9205425 2.311585497 -0.2127 44 14 5103 snR11 snR11 yes 458 116 132 48.945401 329.865997 189.405699 2.277393042 -0.128567 44 15 1989 Lys2 LysCTT_ii 3_flank no 273 1523.648128 8894.283552 5208.96584 3.716751509 -2.50012 44 16 11663 "rRNA(18S,5.8S,25S)" 25S yes 7956 5201 5216 71.491098 327.294515 199.3928065 2.299709486 0.025626 44 17 5937 snR36 snR36 yes 555 141 153 29.588007 249.160726 139.3743665 2.144182906 0.170758 44 18 5106 snR11 snR11 yes 458 131 148 31.94894 278.872211 155.4105755 2.191480569 0.138656 44 19 19461 CYC1 CYC1 yes 400 321 335 74.859903 342.959687 208.909795 2.319958803 -0.064596 44 20 2851 Pro7 ProTGG_vi intron/tRNA no 303 i25 45 43.065896 299.710791 171.3883435 2.233981281 0.10396 44 21 4573 U3b (snR17b) U3b yes 662 421 436 66.627931 360.465925 213.546928 2.329493328 -0.240702 44 22 8422 snoRNA cluster 5 snR190 yes 586 276 290 76.556847 315.041731 195.799289 2.29181111 0.14999 44 23 11389 "rRNA(18S,5.8S,25S)" 25S yes 7956 3831 3848 35993.09973 31003.86253 33498.48113 4.525025116 -0.71419 44 24 6669 snR48 3_flank no 313 54.333623 362.991413 208.662518 2.319444444 -0.341354 44 25 18011 YLR287C intron no 530 401 415 50.055999 288.25776 169.1568795 2.228289665 0.23287 44 26 11351 "rRNA(18S,5.8S,25S)" 25S yes 7956 3641 3656 421.55433 786.719685 604.1370075 2.78113544 -0.170218 44 27 1703 Leu6 LeuGAG tRNA/3_flank no 282 33.082276 316.757553 174.9199145 2.242839256 -0.096717 44 28 12820 MT_COX1 ai1 no 13084 1501 1522 33.058124 349.322135 191.1901295 2.281465467 -0.349132 44 29 2254 Phe1 PheGAA_i 3_flank no 292 35.125985 285.844705 160.485345 2.20543538 0.181879 44 30 19326 YPL218W intron no 239 81 102 32.970653 303.447365 168.209009 2.225849252 0.007974 44 31 1285 Ile2 IleTAT_i tRNA yes 333 61 73 96.770354 348.52005 222.645202 2.347613341 0.040368 44 32 6630 snR48 5_flank no 313 41.196881 278.498188 159.8475345 2.203705942 0.304056 44 33 11585 "rRNA(18S,5.8S,25S)" 25S yes 7956 4811 4824 13222.28155 11695.86224 12459.07189 4.095485692 -0.320038 44 34 1490 Leu3 LeuCAA_iii 5_flank no 314 30.646589 289.75281 160.1996995 2.204661697 0.024728 44 35 20242 YDR367W spliced yes 40 5 22 62.106392 334.616072 198.361232 2.297456797 -0.087827 44 36 2540 Pro2 ProTGG_i 5_flank no 303 84.184557 374.885784 229.5351705 2.36084924 -0.209572 44 37 10450 RUF8 RUF8 yes 1151 176 192 43.401447 291.797462 167.5994545 2.224272601 0.178476 44 38 13241 MT_COX1 ai4 no 13084 7816 7837 29.864328 317.464374 173.664351 2.239710678 -0.17044 44 39 8703 LSR1 / U2 RNA U2 yes 1375 156 171 35.214375 256.320604 145.7674895 2.163660674 0.39553 44 40 12750 MT_COX1 ai1 no 13084 451 469 33.164151 317.506481 175.335316 2.2438694 -0.101529 44 41 13517 MT_COX1 intronic no 13084 11956 11975 33.169988 320.111016 176.640502 2.24709029 -0.121646 44 42 9084 snR14 / U4 RNA U4 yes 360 36 52 37.337674 282.533961 159.9358175 2.203945735 0.235953 44 43 14390 MT_21S 5_flank no 4639 61 89 35.117819 357.576143 196.346981 2.293024228 -0.408866 44 44 7518 snR79 5_flank no 284 30.79084 285.759812 158.275326 2.199413217 0.05518 44 45 12693 MT_ORF 8 5_flank no 491 61 87 30.660808 286.974407 158.8176075 2.200898649 0.042952 44 46 21258 YPL079W spliced yes 40 1 20 55.571442 356.892655 206.2320485 2.314356156 -0.290472 44 47 16232 YDR381W intron no 866 541 557 36.696457 298.137111 167.416784 2.223798995 0.095935 44 48 4793 snR5 snR5 yes 404 136 158 30.45723 293.110759 161.7839945 2.208935554 -0.002959 44 49 19789 Negative Control no 60 NA #VALUE! 30.47602 291.673767 161.0748935 2.207027853 0.006734 44 50 13594 MT_ATP8/AAP1 5_flank no 347 46 70 30.53043 317.537638 174.034034 2.240634187 -0.14783 44 51 6533 snR46 snR46 yes 397 156 172 49.392467 277.222352 163.3074095 2.21300589 0.337427 44 52 11969 "rRNA(18S,5.8S,25S)" 25S yes 7956 6731 6751 21039.05727 18453.78472 19746.421 4.295488392 -0.510639 44 53 243 Arg3 ArgCCG tRNA/3_flank no 272 35.014336 292.293803 163.6540695 2.213926809 0.125424 44 54 4441 telomerase RNA telomerase yes 1501 1241 1260 30.936752 300.700283 165.8185175 2.219633028 -0.033713 44 55 368 Asn1 AsnGTT 5_flank no 274 36.301613 307.358979 171.830296 2.235099738 0.016172 44 56 16828 YGL178W intron no 740 341 358 31.091791 328.580336 179.8360635 2.254876788 -0.212972 44 57 16458 YER074W 3_exon no 202 161 178 41.685631 325.822997 183.754314 2.264237544 -0.129817 44 58 15953 YDL130W exon/intron no 401 41 57 31.063421 288.815643 159.939532 2.203955821 0.0448 44 59 7455 snR69 3_flank no 301 33.063298 275.404206 154.233752 2.188179424 0.197497 44 60 13487 MT_COX1 intronic no 13084 11506 11528 30.804765 301.679033 166.241899 2.220740491 -0.044161 44 61 10351 RUF7 RUF7 yes 700 366 385 30.60853 298.439339 164.5239345 2.216229087 -0.030955 44 62 2909 Pro8 ProTGG_vii tRNA yes 305 i30 46 89.403585 317.360464 203.3820245 2.308312566 0.211173 44 63 14120 MT_COB intronic no 7308 5986 6008 30.194668 328.127868 179.161268 2.253244127 -0.221689 44 64 17806 YKL190W 3_exon no 176 141 158 67.002168 349.488707 208.2454375 2.318575495 -0.163367 44 65 2479 Phe5 PheGAA_v 3_flank no 291 76.967923 303.194708 190.0813155 2.278939429 0.245196 44 66 8224 snoRNA cluster 3; snR51/3_flank no 743 631 650 29.807177 327.511893 178.659535 2.252026199 -0.229809 44 67 13103 MT_COX1 ai3 no 13084 5746 5762 33.771547 275.807313 154.78943 2.189741301 0.216936 44 68 16342 YDR500C intron no 439 121 137 35.699001 292.464021 164.081511 2.215059647 0.132003 44 69 17626 YJR094W intron no 375 121 141 31.554411 309.771579 170.662995 2.232139363 -0.067792 44 70 3624 Val1 ValAAC_i 3_flank no 274 29.397587 341.409919 185.403753 2.268118521 -0.33083 44 71 4816 snR5 3_flank no 404 31.174514 320.720773 175.9476435 2.245383455 -0.15204 44 72 6638 snR48 snR48 yes 313 16 35 32.873529 298.965196 165.9193625 2.21989707 0.04035 44 73 20281 YDR450W spliced yes 40 17 34 28.668522 299.256446 163.962484 2.214744489 -0.112794 44 74 71 Ala2 AlaTGC 5_flank/tRNA no 273 106.515054 344.441208 225.478131 2.353104426 0.127885 44 75 18325 YML094W 5_exon no 183 1 17 53.294923 311.337851 182.316387 2.260825706 0.046052 44 76 10008 RUF5-1 3_flank no 975 38.649488 304.364017 171.5067525 2.234281224 0.050077 44 77 9387 RUF1 RUF1 yes 750 511 528 31.913172 291.259328 161.58625 2.208404402 0.057468 44 78 14320 MT_VAR1 VAR1 yes 1467 1006 1034 26.226718 322.751156 174.488937 2.241767897 -0.351757 44 79 14933 MT_Asn tRNA yes 271 121 138 35.877013 306.610408 171.2437105 2.23361463 0.017327 44 80 16867 YGL187C intron no 442 201 215 68.944149 306.557584 187.7508665 2.27358195 0.171841 44 81 21540 copy of SH4150 no 875 65.267393 313.4008 189.3340965 2.277228832 0.095509 44 82 17773 YKL180W intron no 406 121 138 30.417917 290.851842 160.6348795 2.205839852 0.009937 44 83 21191 YOL120C spliced yes 40 13 27 43.116941 290.952951 167.034946 2.222807341 0.185974 44 84 3463 Trp1 TrpCCA 3_flank no 306 44.128973 289.137531 166.633252 2.22176167 0.205948 44 85 1963 Lys2 LysCTT_ii tRNA yes 273 16 28 34.35563 264.660904 149.508267 2.174665207 0.310795 44 86 8069 snoRNA cluster 2 snR61 yes 739 581 598 32.302557 302.724181 167.513369 2.224049473 -0.000952 44 87 18048 YLR333C intron no 523 241 258 32.103475 299.073117 165.588296 2.219029637 0.014933 44 88 14564 MT_21S 21S_rRNA3 yes 4639 2671 2693 31.820506 323.053132 177.436819 2.249043743 -0.161454 44 89 12309 5S rRNA NTS2 no 1420 501 518 35.236972 310.470598 172.853785 2.237678894 -0.021046 44 90 19286 YPL143W 3_exon no 625 601 617 42.260938 302.095234 172.178086 2.235977876 0.079537 44 91 7293 snR66 5_flank no 286 28.848755 311.810202 170.3294785 2.231289817 -0.17348 44 92 7124 snR63 snR63 yes 455 126 143 30.331721 275.473896 152.9028085 2.184415463 0.085099 44 93 5651 snR34 snR34 yes 750 176 195 51.748389 347.741815 199.745102 2.300476139 -0.248943 44 94 8903 LSR1 / U2 RNA U2 yes 1375 1156 1168 75.745722 294.792519 185.2691205 2.26780304 0.307794 44 95 19881 Negative Control no 60 NA #VALUE! 44.022792 275.48914 159.755966 2.203457086 0.340467 44 96 14406 MT_21S 21S_rRNA3 yes 4639 301 327 26.092859 281.704832 153.8988455 2.187235362 -0.188671 44 97 8712 LSR1 / U2 RNA U2 yes 1375 201 218 27.781525 237.88543 132.8334775 2.123307542 0.108461 44 98 18024 YLR306W intron no 234 141 159 29.448594 299.576929 164.5127615 2.216199592 -0.078301 44 99 5082 snR11 snR11 yes 458 11 28 62.998612 304.231424 183.615018 2.2639082 0.157963 44 100 12788 MT_COX1 ai1 no 13084 1021 1038 30.973959 326.821741 178.89785 2.252605121 -0.201282 44 101 8666 LSR1 / U2 RNA 5_flank no 1375 30.868246 319.382716 175.125481 2.243349341 -0.147007 44 102 3588 Val1 ValAAC_i 5_flank no 274 30.783323 282.105162 156.4442425 2.194359585 0.076387 44 103 9182 snR7 U5 RNA U5 yes 415 181 197 66.143211 299.991619 183.067415 2.262611049 0.210833 44 104 9547 RUF3 RUF3 yes 631 121 138 28.909909 313.963789 171.436849 2.234104176 -0.183942 45 2 5136 snR11 3_flank no 458 28.950231 326.545272 177.7477515 2.249804116 -0.254828 45 3 21241 YOR312C spliced yes 40 9 26 56.62516 340.062505 198.3438325 2.297418701 -0.161628 45 4 3211 Thr1 ThrAGT 5_flank no 273 35.862607 393.712102 214.7873545 2.332008709 -0.670396 45 5 16030 YDL191W intron no 591 61 81 45.848042 353.380964 199.614503 2.300192092 -0.326399 45 6 18208 YML024W 3_exon no 498 461 475 68.972694 309.127407 189.0500505 2.276576798 0.151427 45 7 18013 YLR287C intron no 530 441 462 29.421421 311.640262 170.5308415 2.231802935 -0.151951 45 8 1720 Leu6 LeuGAG 3_flank no 282 45.279512 293.762937 169.5212245 2.229224081 0.166081 45 9 12967 MT_COX1 ai2 no 13084 3706 3725 29.214981 282.219164 155.7170725 2.19233623 -0.0054 45 10 20605 YHR077C spliced yes 40 9 25 50.985133 356.064334 203.5247335 2.308617195 -0.314576 45 11 15228 MT_COX3 cox3 no 1010 841 862 29.073314 282.895743 155.9845285 2.193081525 -0.016141 45 12 10850 "rRNA(18S,5.8S,25S)" 18S yes 7956 1136 1156 31.006755 297.816923 164.411839 2.215933087 -0.013613 45 13 19406 YPR098C 5_exon no 196 21 37 33.965323 282.005258 157.9852905 2.198616653 0.181994 45 14 1331 Ile3 IleTAT_ii tRNA/intron no 333 36 i15 33.038442 287.585792 160.312117 2.204966349 0.117023 45 15 989 Gly2 GlyCCC_ii 5_flank no 272 37.163006 351.567431 194.3652185 2.288618551 -0.354768 45 16 4964 snR9 3_flank no 387 35.434038 321.108474 178.271256 2.251081324 -0.107489 45 17 11355 "rRNA(18S,5.8S,25S)" 25S yes 7956 3661 3674 62.233485 287.763063 174.998274 2.243033765 0.295896 45 18 11669 "rRNA(18S,5.8S,25S)" 25S yes 7956 5231 5246 118.584727 382.083696 250.3342115 2.398520206 -0.026437 45 19 17727 YKL156W intron no 450 121 140 38.659072 337.312956 187.986014 2.274125539 -0.235614 45 20 5526 snR33 5_flank no 383 32.752001 300.218657 166.485329 2.221375969 0.028779 45 21 3769 Val4 ValTAC tRNA/3_flank no 274 32.961658 284.750991 158.8563245 2.20100451 0.132832 45 22 14815 MT_Lys; Arg1; Gly tRNA/intergenic no 682 406 423 49.978424 330.916515 190.4474695 2.279775207 -0.130889 45 23 2702 Pro4 ProTGG_iii 3_flank no 302 33.130747 281.67499 157.4028685 2.197012643 0.158173 45 24 941 Gly1 GlyCCC_i 5_flank no 272 31.030569 309.300496 170.1655325 2.230871597 -0.082471 45 25 8771 LSR1 / U2 RNA U2 yes 1375 496 508 35.237124 281.219982 158.228553 2.199284856 0.223498 45 26 7512 snR79 5_flank no 284 41.568287 315.993568 178.7809275 2.252321186 -0.046194 45 27 4054 SRP SRP yes 875 161 180 33.120667 300.561103 166.840885 2.222302485 0.033473 45 28 6063 snR37 snR37 yes 586 231 250 33.113508 280.815896 156.964702 2.195802 0.163253 45 29 16037 YDL191W intron no 591 201 220 33.084048 309.776147 171.4300975 2.234087072 -0.041617 45 30 15265 MT_9S 9S yes 701 151 179 26.72613 306.763853 166.7449915 2.222052798 -0.254797 45 31 13003 MT_COX1 ai2 no 13084 4246 4263 31.868759 298.108146 164.9884525 2.217453549 0.013221 45 32 11211 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2941 2954 66.422678 317.104462 191.76357 2.282766106 0.072801 45 33 6903 snR56 3_flank no 288 30.589973 289.509482 160.0497275 2.204254939 0.024344 45 34 6209 snR40 3_flank no 297 34.655957 296.534878 165.5954175 2.219048314 0.085564 45 35 1112 Gly4 GlyTCC tRNA yes 272 36 49 899.551097 3316.119677 2107.835387 3.323836691 -1.575669 45 36 3445 Trp1 TrpCCA tRNA yes 306 i20 41 33.619761 318.361305 175.990533 2.245489307 -0.102524 45 37 17009 YGR148C intron no 479 101 115 38.90981 309.225959 174.0678845 2.240718651 0.00641 45 38 7773 snoRNA cluster1 intergenic no 1574 661 677 39.035991 270.190504 154.6132475 2.189246702 0.364769 45 39 19725 Negative Control no 60 NA #VALUE! 34.965543 271.577061 153.271302 2.185460847 0.281675 45 40 19119 YPL031C intron no 202 101 121 32.945974 349.058167 191.0020705 2.281038075 -0.34733 45 41 11596 "rRNA(18S,5.8S,25S)" 25S yes 7956 4866 4883 146.499613 371.541706 259.0206595 2.413334405 0.192575 45 42 9424 RUF2 5_flank no 468 31.896863 253.518146 142.7075045 2.154446812 0.273876 45 43 2204 Met2 MetCAT_ii 3_flank no 272 32.866749 356.671061 194.768905 2.289519623 -0.407833 45 44 7478 snR71 snR71 yes 290 6 23 36.927249 280.984252 158.9557505 2.201276244 0.244969 45 45 2795 Pro6 ProTGG_v intron/tRNA no 302 i30 49 122.555605 336.447068 229.5013365 2.360785219 0.273911 45 46 20065 YBR230C spliced yes 40 9 25 36.678784 284.80849 160.743637 2.20613379 0.208766 45 47 13336 MT_COX1 ai5a no 13084 9241 9265 28.35264 297.119735 162.7361875 2.211484137 -0.120467 45 48 8757 LSR1 / U2 RNA U2 yes 1375 426 443 42.832452 359.874097 201.3532745 2.303958697 -0.391173 45 49 12624 MT_15S 15S yes 1848 1111 1130 30.466857 300.843076 165.6549665 2.219204461 -0.05057 45 50 1604 Leu4 LeuCAA_iv 3_flank no 314 32.637738 295.75592 164.196829 2.215364766 0.052704 45 51 4790 snR5 snR5 yes 404 121 140 30.68888 295.686434 163.187657 2.212687307 -0.011155 45 52 18329 YML094W intron no 183 81 93 92.703427 316.727928 204.7156775 2.311151103 0.235433 45 53 8853 LSR1 / U2 RNA U2 yes 1375 906 922 419.974658 547.499824 483.737241 2.684609523 0.45541 45 54 5039 snR10 snR10 yes 445 226 244 35.295739 298.435403 166.865571 2.222366739 0.077349 45 55 14454 MT_21S 21S_rRNA3 yes 4639 1021 1042 31.157686 315.513095 173.3353905 2.238887243 -0.114817 45 56 8940 snR17a / U3a 5_flank/U3a no 690 33.323385 305.193014 169.2581995 2.228549717 -0.001796 45 57 8158 snoRNA cluster 3; snR70 yes 743 301 318 33.330753 283.19545 158.2631015 2.199379672 0.154546 45 58 8485 snR19 / U1 RNA 5_flank no 868 33.291778 298.372044 165.831911 2.219668105 0.053672 45 59 17681 YKL006W intron no 498 121 137 41.670587 321.509307 181.589947 2.259091802 -0.093311 45 60 19464 CYC1 CYC1 yes 400 381 398 35.167667 301.548752 168.3582095 2.226234298 0.050196 45 61 2951 Ser1 SerAGA_i 5_flank/tRNA no 283 32.875643 313.63451 173.2550765 2.238685969 -0.074824 45 62 8952 snR17a / U3a U3a yes 690 46 65 36.817824 307.551856 172.18484 2.235994911 0.016532 45 63 3119 Ser4 SerGCT tRNA yes 301 1 13 42965.95882 8816.108853 25891.03383 4.413149392 1.590591 45 64 5715 snR34 snR34 yes 750 496 513 34.263781 343.211811 188.737796 2.275858879 -0.296555 45 65 394 Asn1 AsnGTT tRNA yes 274 50 65 81.21424 336.490053 208.8521465 2.319838943 0.022009 45 66 10211 RUF6 RUF6 yes 1251 901 915 37.967871 273.877834 155.9228525 2.192909771 0.319783 45 67 21693 copy of SH10453 no 1151 33.763873 306.27888 170.0213765 2.230503528 -0.005135 45 68 2848 Pro7 ProTGG_vi tRNA-intron no 303 i10 i26 66.038873 294.838314 180.4385935 2.256329433 0.254081 45 69 1389 Leu1 LeuCAA_i tRNA yes 315 16 27 35.47422 284.15028 159.81225 2.203610066 0.200657 45 70 17786 YKL180W 3_exon no 406 381 398 29.295501 301.780875 165.538188 2.218898197 -0.097239 45 71 3871 RNaseP RNaseP yes 569 321 335 36.997039 293.473566 165.2353025 2.21810284 0.138276 45 72 10792 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 846 866 40.630366 307.764929 174.1976475 2.241042286 0.023594 45 73 20718 YJL136C spliced yes 40 5 21 34.44171 322.617769 178.5297395 2.251710571 -0.125346 45 74 17588 YJL191W intron no 508 281 298 32.266855 279.210564 155.7387095 2.192396572 0.146763 45 75 17962 YLR185W intron no 459 221 237 28.275726 292.81502 160.545373 2.205597793 -0.105254 45 76 9211 snR6 / U6 RNA 5_flank no 312 62.977477 294.975658 178.9765675 2.252796175 0.235963 45 77 19451 CYC1 CYC1 yes 400 121 137 39.773732 296.146268 167.96 2.225205866 0.129172 45 78 19140 YPL075W intron no 851 321 340 31.176001 306.833649 169.004825 2.227899104 -0.062845 45 79 16745 YGL076C intron no 559 321 343 26.432445 301.329261 163.880853 2.214528216 -0.248163 45 80 7700 snoRNA cluster1 intergenic no 1574 296 317 26.474369 301.159852 163.8171105 2.214359261 -0.244952 45 81 20333 YER074W spliced yes 40 25 40 36.145838 261.519717 148.8327775 2.172698587 0.38582 45 82 20276 YDR447C spliced yes 40 21 37 53.624869 330.354589 191.989729 2.283277996 -0.105592 45 83 10023 RUF6 5_flank no 1251 26.48376 275.598735 151.0412475 2.179095564 -0.137907 45 84 6183 snR40 5_flank no 297 26.451079 325.958168 176.2046235 2.2460173 -0.351688 45 85 9685 RUF4 RUF4 yes 988 201 216 45.665754 311.742932 178.704343 2.252135107 0.004342 45 86 21915 copy of SH19998 no 40 75.522236 319.134633 197.3284345 2.29518967 0.112405 45 87 21802 copy of SH15072 no 2427 29.970365 314.294539 172.132452 2.235862755 -0.148263 45 88 9905 RUF5-1 RUF5-1 yes 975 331 348 29.759024 271.265484 150.512254 2.17757186 0.075982 45 89 14981 MT_COX 2; ORF1 COX2 no 2427 316 337 29.500868 305.822422 167.661645 2.224433723 -0.114438 45 90 19679 SIR1 2.4 SIR1 2.4 yes 401 301 320 31.075546 316.871742 173.973644 2.24048346 -0.125485 45 91 9801 RUF4 RUF4/3_flank no 988 30.780339 364.895876 197.8381075 2.296309949 -0.477521 45 92 15999 YDL137W intron no 432 61 77 56.250882 395.242985 225.7469335 2.35362186 -0.540102 45 93 6494 snR46 5_flank no 397 31.241885 298.227617 164.734751 2.216785224 -0.008262 45 94 12110 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7436 7451 78.389693 333.215323 205.802508 2.313450663 0.026966 45 95 14066 MT_COB bi4 no 7308 5176 5195 30.109004 289.685782 159.897393 2.203841383 0.006662 45 96 7452 snR69 3_flank no 301 30.015684 264.480032 147.247858 2.168048986 0.123058 45 97 9091 snR14 / U4 RNA U4 yes 360 71 88 60.548206 293.968593 177.2583995 2.248606824 0.23252 45 98 3343 Thr3 ThrTGT_i tRNA/3_flank no 272 73.703181 351.016439 212.35981 2.327072328 -0.127874 45 99 14603 MT_21S Sce1 no 4639 3256 3271 58.100574 309.122725 183.6116495 2.263900232 0.090155 45 100 4923 snR9 snR9 yes 387 21 40 27.616966 305.933064 166.775015 2.222130988 -0.20024 45 101 11805 "rRNA(18S,5.8S,25S)" 25S yes 7956 5911 5924 34.484529 327.72546 181.1049945 2.257930427 -0.166961 45 102 10758 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 676 691 206.119429 406.557785 306.338607 2.486201733 0.297676 45 103 3912 RNase MRP 5_flank no 540 30.701259 281.644014 156.1726365 2.193604942 0.074418 45 104 14778 MT_ORF11; Leu; Gln tRNAGln yes 716 556 575 27.095298 316.940605 172.0179515 2.235573772 -0.276941 46 2 20564 YHR001W-A spliced yes 40 21 37 34.096639 315.228353 174.662496 2.242199662 -0.072252 46 3 5720 snR34 snR34 yes 750 521 539 35.977889 365.723193 200.850541 2.302873006 -0.467663 46 4 10202 RUF6 RUF6 yes 1251 856 880 29.713679 365.380446 197.5470625 2.295670576 -0.494095 46 5 5899 snR36 5_flank no 555 29.570806 282.666369 156.1185875 2.193454613 0.011301 46 6 13614 MT_ATP6 5_flank no 980 16 42 29.425451 263.292144 146.3587975 2.165418833 0.098194 46 7 4079 SRP SRP yes 875 286 300 43.245208 309.055541 176.1503745 2.245883571 0.020334 46 8 18281 YML067C 5_exon no 193 1 17 31.140892 300.667209 165.9040505 2.219856989 -0.026643 46 9 19650 SIR1 2.2 SIR1 2.2 yes 401 121 137 48.877724 323.567982 186.222853 2.270032976 -0.078019 46 10 1687 Leu6 LeuGAG tRNA yes 282 1 13 118.351581 379.808813 249.080197 2.396339201 -0.015043 46 11 4549 U3b (snR17b) U3b yes 662 301 323 28.979153 285.504812 157.2419825 2.196568511 -0.033407 46 12 2771 Pro6 ProTGG_v 5_flank no 302 40.839243 318.327534 179.5833885 2.254266162 -0.0689 46 13 10794 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 856 874 38.948146 295.443331 167.1957385 2.223225204 0.133897 46 14 8522 snR19 / U1 RNA U1 yes 868 106 123 36.130851 349.21401 192.6724305 2.284819576 -0.340152 46 15 20350 YER102W spliced yes 40 17 36 37.374411 327.542898 182.4586545 2.261164468 -0.158056 46 16 1443 Leu2 LeuCAA_ii 5_flank/tRNA no 314 37.717789 346.018491 191.86814 2.283002865 -0.309019 46 17 98 Ala2 AlaTGC 3_flank no 273 47.341395 321.184409 184.262902 2.265437907 -0.066345 46 18 1068 Gly3 GlyGCC 3_flank no 271 28.265581 286.521263 157.393422 2.196986578 -0.076878 46 19 3687 Val3 ValCAC 5_flank no 273 30.633122 308.644777 169.6389495 2.229525574 -0.092025 46 20 20389 YFL034C-B spliced yes 40 21 37 35.066771 286.392205 160.729488 2.206095561 0.176452 46 21 17197 YHR021C intron no 650 521 538 33.130242 312.182031 172.6561365 2.237182019 -0.060158 46 22 8320 snoRNA cluster4 intergenic no 638 386 408 28.984762 304.851772 166.918267 2.222503867 -0.127015 46 23 19971 YBL072C spliced yes 40 17 38 33.213084 312.944261 173.0786725 2.238243556 -0.065151 46 24 18056 YLR333C intron no 523 401 418 33.192382 312.726923 172.9596525 2.237944804 -0.063692 46 25 19405 YPR098C 5_exon no 196 1 20 31.059978 313.049584 172.054781 2.235666745 -0.103665 46 26 1796 Leu8 LeuTAG_i tRNA yes 301 6 19 1916.000569 1873.727658 1894.864114 3.277578071 0.314416 46 27 2384 Phe4 PheGAA_iv 5_flank no 291 34.213233 288.135132 161.1741825 2.207295476 0.149995 46 28 11849 "rRNA(18S,5.8S,25S)" 25S yes 7956 6131 6149 4461.521289 14338.65938 9400.090332 3.973132027 -1.984454 46 29 13252 MT_COX1 ai4 no 13084 7981 8003 32.0745 309.990446 171.032473 2.233078575 -0.056157 46 30 7295 snR66 5_flank no 286 76.534814 355.77582 216.155317 2.334765923 -0.140752 46 31 3106 Ser4 SerGCT 5_flank no 301 39.229888 291.993403 165.6116455 2.219090872 0.167374 46 32 13770 MT_COB intronic no 7308 736 762 28.603094 303.806654 166.204874 2.220643755 -0.136439 46 33 350 Arg5 ArgTCT 3_flank no 272 111.210628 380.907156 246.058892 2.391039064 -0.065556 46 34 10641 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 91 109 69.941889 374.54018 222.2410345 2.34682425 -0.308963 46 35 7622 snR189 snR189/3_flank no 389 55.169244 272.748097 163.9586705 2.214734388 0.402755 46 36 19613 RNA14 1.1 RNA14 1.1 yes 401 161 177 40.629642 313.28546 176.957551 2.247869099 -0.025838 46 37 8509 snR19 / U1 RNA U1 yes 868 41 60 30.361073 280.895101 155.628087 2.192087979 0.060651 46 38 15195 MT_COX3 cox3 no 1010 346 367 32.510643 319.788391 176.149517 2.245881457 -0.127468 46 39 14259 MT_VAR1 5_flank no 1467 91 117 28.461786 283.3755 155.918643 2.192898046 -0.051428 46 40 21677 copy of SH9840 no 975 30.605272 339.327479 184.9663755 2.267092786 -0.29904 46 41 15929 YDL108W intron/exon no 181 121 138 32.72401 331.798002 182.261006 2.260693763 -0.215869 46 42 8661 LSR1 / U2 RNA 5_flank no 1375 30.636759 269.029946 149.8333525 2.175608497 0.132166 46 43 1077 Gly3 GlyGCC 3_flank no 271 32.663828 340.355317 186.5095725 2.270701127 -0.279561 46 44 12591 MT_15S 15S yes 1848 616 638 28.435779 279.5125 153.9741395 2.187447786 -0.034571 46 45 18183 YLR448W 3_exon no 484 441 456 34.542213 267.885119 151.213666 2.179591042 0.294157 46 46 10228 RUF6 RUF6 yes 1251 986 1005 34.452552 310.608168 172.53036 2.236865529 -0.031463 46 47 11122 "rRNA(18S,5.8S,25S)" 18S yes 7956 2496 2511 44.730029 280.828667 162.779348 2.211599305 0.288285 46 48 15565 YBR084C intron no 606 61 80 32.369706 317.724063 175.0468845 2.243154386 -0.113262 46 49 11192 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2846 2863 47.985226 298.299779 173.1425025 2.23840369 0.132309 46 50 12650 MT_15S 15S yes 1848 1501 1520 34.664894 308.371472 171.518183 2.234310167 -0.011058 46 51 14535 MT_21S 21S_rRNA3 yes 4639 2236 2253 28.600752 299.215672 163.908212 2.214600713 -0.11629 46 52 3539 Tyr2 TyrGTA_ii 5_flank no 289 35.03759 295.302945 165.1702675 2.217931872 0.100387 46 53 2036 Lys3 LysTTT_i 3_flank no 296 33.102117 322.735044 177.9185805 2.250221305 -0.14267 46 54 15697 YBR220C intron no 521 101 120 29.004946 304.336681 166.6708135 2.221859555 -0.123175 46 55 16622 YFL039C intron no 408 181 198 34.369842 308.984014 171.676928 2.234711933 -0.019502 46 56 867 Glu2 GluTTC_i 3_flank no 272 33.352467 286.54316 159.9478135 2.203978308 0.133589 46 57 2966 Ser1 SerAGA_i tRNA yes 283 52 66 130.446818 302.97606 216.711439 2.335881836 0.546953 46 58 14754 MT_ORF11; Leu; Gln ORF11 yes 716 196 224 31.212624 309.5735 170.393062 2.231451907 -0.077987 46 59 16420 YER056C 3_exon no 497 461 480 31.150766 317.675485 174.4131255 2.241579165 -0.128777 46 60 10473 RUF8 RUF8 yes 1151 291 307 28.938596 208.6715 118.805048 2.074834894 0.31913 46 61 19201 YPL081W intron no 601 181 198 29.842435 274.42049 152.1314625 2.18221904 0.064932 46 62 14911 MT_Tyr 5_flank no 284 61 87 28.610563 311.937696 170.2741295 2.231148669 -0.18289 46 63 10790 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 836 854 34.612284 292.238623 163.4254535 2.213319699 0.121108 46 64 16366 YEL012W intron/exon no 223 161 179 34.353037 309.775754 172.0643955 2.235691013 -0.026029 46 65 13187 MT_COX1 exon4 yes 13084 7006 7027 30.030911 334.63754 182.3342255 2.260868197 -0.272489 46 66 18398 YMR125W intron no 422 101 118 34.917691 318.631547 176.774619 2.24741991 -0.088937 46 67 16276 YDR447C intron no 414 201 220 27.673759 301.683747 164.678753 2.21663757 -0.178423 46 68 17621 YJR094W 5_exon no 375 21 40 33.549937 322.186101 177.868019 2.250097868 -0.132899 46 69 19885 Positive Control 1 no 21 NA #VALUE! 33.374254 287.905668 160.639961 2.20585359 0.125537 46 70 20224 YDR129C spliced yes 40 1 22 29.208355 311.492868 170.3506115 2.231343697 -0.15867 46 71 780 Glu1 GluCTC 5_flank no 272 30.980189 312.123608 171.5518985 2.234395529 -0.100897 46 72 10750 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 636 653 40.569503 318.746072 179.6577875 2.254446047 -0.073448 46 73 7327 snR66 3_flank no 286 52.058253 273.962908 163.0105805 2.212215794 0.377355 46 74 21149 YNL246W spliced yes 40 17 33 30.413643 281.371039 155.892341 2.192824779 0.061084 46 75 11537 "rRNA(18S,5.8S,25S)" 25S yes 7956 4571 4584 439.410429 813.170227 626.290328 2.796775705 -0.178271 46 76 9571 RUF3 RUF3 yes 631 241 258 30.372419 294.688499 162.530459 2.210934762 -0.015755 46 77 11487 "rRNA(18S,5.8S,25S)" 25S yes 7956 4321 4336 65.556037 324.314157 194.935097 2.289890039 0.011853 46 78 11413 "rRNA(18S,5.8S,25S)" 25S yes 7956 3951 3967 664.595927 698.229751 681.412839 2.833410312 0.569908 46 79 14218 MT_ATP9 ATP9 yes 431 166 183 28.626883 301.945666 165.2862745 2.218236791 -0.126965 46 80 11516 "rRNA(18S,5.8S,25S)" 25S yes 7956 4466 4484 40.297596 314.597489 177.4475425 2.249069989 -0.038471 46 81 1801 Leu8 LeuTAG_i tRNA/intron no 301 30 i10 31.464688 289.959068 160.711878 2.206047976 0.050927 46 82 18887 YOL047C intron/exon no 163 101 115 59.551695 322.550668 191.0511815 2.281149728 -0.009964 46 83 12810 MT_COX1 ai1 no 13084 1351 1370 29.301627 317.835625 173.568626 2.239471226 -0.192454 46 84 19341 YPL241C 3_exon no 180 141 156 41.661257 272.026808 156.8440325 2.195468 0.370771 46 85 21844 copy of SH17379 no 572 30.002068 306.313507 168.1577875 2.225716985 -0.099801 46 86 603 Gln1 GlnCTG tRNA yes 272 56 68 4862.842769 9923.557692 7393.200231 3.868832468 -1.265956 46 87 13847 MT_COB bi2 no 7308 1891 1910 31.609664 324.923749 178.2667065 2.251070241 -0.178476 46 88 4239 telomerase RNA telomerase yes 1501 231 246 50.317997 316.515747 183.416872 2.263439283 -0.012716 46 89 19301 YPL198W intron no 509 81 98 29.361947 288.394208 158.8780775 2.201063976 -0.026426 46 90 9306 RUF1 RUF1 yes 750 106 123 32.883546 305.439695 169.1616205 2.228301837 -0.009294 46 91 12496 MT_tRNA Pro 5_flank/tRNA no 272 91 111 30.84307 339.482868 185.162969 2.267554136 -0.296967 46 92 11244 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3106 3123 22600.23012 12855.29261 17727.76136 4.248653897 0.177778 46 93 10058 RUF6 RUF6 yes 1251 136 158 32.450782 306.332354 169.391568 2.228891788 -0.021991 46 94 670 Gln2 GlnTTG_i 3_flank no 272 36.065043 255.927077 145.99606 2.164341136 0.423285 46 95 1866 Leu9 LeuTAG_ii tRNA yes 301 e4 57 1342.662592 1454.734569 1398.698581 3.145724134 0.248029 46 96 5446 snR31 3_flank no 425 26.787613 283.247204 155.0174085 2.190380472 -0.148255 46 97 1705 Leu6 LeuGAG 3_flank no 282 35.727193 254.157366 144.9422795 2.161195087 0.426232 46 98 1502 Leu3 LeuCAA_iii 5_flank no 314 37.288391 353.61552 195.4519555 2.29104002 -0.370221 46 99 21664 copy of SH9399 no 750 29.822857 272.756547 151.289702 2.179809367 0.072011 46 100 17025 YGR148C intron/exon no 479 421 442 29.575433 310.289224 169.9323285 2.230276008 -0.1385 46 101 8924 snR17a / U3a 5_flank no 690 56.883255 393.058003 224.970629 2.352125823 -0.521744 46 102 12831 MT_COX1 ai1 no 13084 1666 1685 29.156205 300.328561 164.742383 2.216805344 -0.093334 46 103 1279 Ile2 IleTAT_i intron/tRNA no 333 i54 45 65.329707 304.498754 184.9142305 2.266970335 0.16871 46 104 19549 CBP1 2.2 CBP1 2.2 yes 401 81 100 35.880755 343.959967 189.920361 2.278571527 -0.298428 47 2 2716 Pro5 ProTGG_iv 5_flank no 303 29.976836 322.206472 176.091654 2.245738773 -0.193812 47 3 15294 MT_9S 9S/3_flank no 701 586 608 31.883429 325.886 178.8847145 2.252573232 -0.182213 47 4 14018 MT_COB exon4 yes 7308 4456 4474 35.779188 334.873981 185.3265845 2.267937722 -0.223887 47 5 11271 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3241 3259 31.559474 319.624532 175.592003 2.244504733 -0.138496 47 6 7199 snR64 snR64 yes 301 61 78 43.420668 304.827499 174.1240835 2.240858844 0.058695 47 7 19444 YPR187W 3_exon no 176 141 158 29.248868 309.523107 169.3859875 2.22887748 -0.145542 47 8 21888 copy of SH18603 no 549 67.981534 333.500385 200.7409595 2.302635996 -0.0418 47 9 16016 YDL137W 3_exon no 432 401 421 29.027685 291.27969 160.1536875 2.204536943 -0.057472 47 10 7197 snR64 snR64 yes 301 51 68 62.670103 319.968729 191.319416 2.281759047 0.028574 47 11 11597 "rRNA(18S,5.8S,25S)" 25S yes 7956 4871 4886 10363.01154 17295.69711 13829.35432 4.140801904 -1.26866 47 12 17234 YHR077C intron/exon no 213 161 173 79.667926 333.905258 206.786592 2.315522376 0.029874 47 13 8958 snR17a / U3a U3a yes 690 76 94 29.163587 296.26621 162.7148985 2.21142732 -0.072819 47 14 19538 CBP1 1.2 CBP1 1.2 yes 401 261 277 35.332338 287.338921 161.3356295 2.207730288 0.17142 47 15 7563 snR79 3_flank no 284 35.639045 308.840623 172.239834 2.236133598 -0.00334 47 16 21764 copy of SH13599 no 347 31.95424 277.230397 154.5923185 2.189187911 0.149701 47 17 2794 Pro6 ProTGG_v intron/tRNA no 302 i25 46 109.30883 372.370186 240.839508 2.381727731 -0.027753 47 18 2417 Phe4 PheGAA_iv 3_flank no 291 32.714774 261.634552 147.174663 2.16783305 0.271252 47 19 6341 snR43 5_flank no 409 30.935446 282.096945 156.5161955 2.194559283 0.083826 47 20 5372 snR31 5_flank no 425 29.034517 302.472589 165.753553 2.219462846 -0.110799 47 21 17967 YLR185W intron no 459 321 338 33.375906 309.995184 171.685545 2.234733731 -0.039727 47 22 4601 snR3 5_flank no 395 65.460286 303.414511 184.4373985 2.265848988 0.178442 47 23 8204 snoRNA cluster 3; intergenic/snR51 no 743 531 548 31.238141 291.500322 161.3692315 2.207820731 0.033621 47 24 20048 YBR191W spliced yes 40 9 25 41.779845 294.519769 168.149807 2.225696373 0.149053 47 25 9132 snR7 U5 RNA 5_flank no 415 35.346916 292.105677 163.7262965 2.214118438 0.130929 47 26 16934 YGR027C exon/intron no 412 41 60 33.194246 305.114391 169.1543185 2.22828309 -0.002767 47 27 19144 YPL075W intron no 851 401 422 33.180054 327.536981 180.3585175 2.256136657 -0.178196 47 28 15519 YBR048W intron no 611 341 355 54.379881 304.488913 179.434397 2.2539057 0.109614 47 29 6700 snR49 snR49 yes 365 26 41 45.840103 290.833549 168.336826 2.226179134 0.195324 47 30 12186 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7816 7834 35.180504 290.627758 162.904131 2.211932097 0.141511 47 31 16926 YGR001C exon/intron no 162 41 60 32.944012 306.212913 169.5784625 2.229370693 -0.014781 47 32 8734 LSR1 / U2 RNA U2 yes 1375 311 333 34.850087 292.897309 163.873698 2.214509254 0.11838 47 33 3617 Val1 ValAAC_i 3_flank no 274 28.423205 293.557395 160.9903 2.20679971 -0.100543 47 34 19501 YPT1 YPT1 yes 402 321 338 32.382915 302.272582 167.3277485 2.223567967 0.004391 47 35 18263 YML056C intron no 508 141 159 32.256985 305.973445 169.115215 2.228182682 -0.022083 47 36 14563 MT_21S 21S_rRNA3 yes 4639 2656 2675 44.533942 334.702818 189.61838 2.277880432 -0.190192 47 37 6972 snR60 5_flank no 304 30.164771 276.044766 153.1047685 2.184988717 0.073766 47 38 17265 YHR123W 5_exon no 191 1 18 30.218712 283.868966 157.043839 2.196020903 0.039324 47 39 7130 snR63 snR63 yes 455 156 170 64.465924 284.541058 174.503491 2.24180412 0.335503 47 40 9627 RUF4 5_flank no 988 30.358246 272.386058 151.372152 2.180045985 0.101468 47 41 13115 MT_COX1 ai3 no 13084 5926 5943 29.370662 268.014645 148.6926535 2.172289512 0.071625 47 42 20493 YGL251C spliced yes 40 9 26 38.684297 357.593195 198.138746 2.29696941 -0.39567 47 43 18164 YLR448W intron no 484 61 78 45.903711 400.718794 223.3112525 2.348910607 -0.651546 47 44 14899 MT_Ile tRNA yes 276 136 155 34.438136 352.567994 193.503065 2.286687848 -0.37124 47 45 18096 YLR367W intron no 583 141 156 30.242291 284.601329 157.42181 2.197064902 0.037105 47 46 1547 Leu4 LeuCAA_iv 5_flank no 314 30.176867 289.220486 159.6986765 2.203301317 0.011985 47 47 7588 snR189 snR189 yes 389 11 27 36.294486 282.106968 159.200727 2.201945047 0.227958 47 48 9594 RUF3 RUF3 yes 631 356 373 30.180411 276.807261 153.493836 2.18609094 0.070899 47 49 12299 5S rRNA NTS2 no 1420 451 467 34.386429 332.811107 183.598768 2.263869763 -0.210247 47 50 16272 YDR447C intron no 414 121 137 55.323499 324.543921 189.93371 2.278602051 -0.0504 47 51 1486 Leu3 LeuCAA_iii 5_flank no 314 34.764556 267.81817 151.291363 2.179814136 0.301317 47 52 7285 snR66 5_flank no 286 32.882868 306.555564 169.719216 2.229731017 -0.018315 47 53 12224 5S rRNA NTS2 no 1420 76 97 35.156479 320.519496 177.8379875 2.250024535 -0.103078 47 54 4319 telomerase RNA telomerase yes 1501 631 645 50.12591 275.867888 162.996899 2.212179342 0.352961 47 55 10799 "rRNA(18S,5.8S,25S)" 5_ETS/18S no 7956 881 901 29.027991 311.341783 170.184887 2.230920991 -0.164245 47 56 21511 copy of SH2856 no 303 77.067891 318.562943 197.815417 2.296260136 0.126564 47 57 13070 MT_COX1 exon3 yes 13084 5251 5268 41.792763 287.712135 164.752449 2.216831879 0.214423 47 58 13729 MT_COB exon1 yes 7308 121 140 31.16706 299.832905 165.4999825 2.218797952 -0.02065 47 59 11632 "rRNA(18S,5.8S,25S)" 25S yes 7956 5046 5061 35.357693 265.919103 150.638398 2.177935688 0.332085 47 60 12522 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 226 252 31.045562 304.526546 167.786054 2.22475586 -0.053327 47 61 6909 snR58 5_flank no 296 39.33141 284.030446 161.680928 2.208658793 0.244438 47 62 8921 LSR1 / U2 RNA 3_flank no 1375 91.402689 317.968958 204.6858235 2.311087765 0.218628 47 63 19072 YOR293W intron no 537 201 221 32.577559 307.895951 170.236755 2.231053332 -0.032959 47 64 11428 "rRNA(18S,5.8S,25S)" 25S yes 7956 4026 4039 50337.65299 11411.86189 30874.75744 4.489603554 1.355774 47 65 9068 snR14 / U4 RNA 5_flank no 360 32.064253 309.849149 170.956701 2.232886129 -0.055163 47 66 9926 RUF5-1 RUF5-1 yes 975 436 456 30.824604 309.84018 170.332392 2.231297245 -0.092635 47 67 2505 Pro1 ProAGG tRNA yes 272 16 32 35.671012 277.964347 156.8176795 2.195395023 0.257343 47 68 15356 YBL026W intron no 228 101 116 35.475289 282.068714 158.7720015 2.20077392 0.21884 47 69 8887 LSR1 / U2 RNA U2 yes 1375 1076 1093 29.31254 302.555031 165.9337855 2.219934821 -0.101349 47 70 5121 snR11 snR11 yes 458 206 220 41.057295 310.703816 175.8805555 2.245217829 -0.00165 47 71 12261 5S rRNA NTS2 no 1420 261 273 34.892237 270.361712 152.6269745 2.183631295 0.287741 47 72 3877 RNaseP RNaseP yes 569 351 366 88.697795 347.07213 217.8849625 2.338227258 -0.00194 47 73 1435 Leu2 LeuCAA_ii 5_flank no 314 54.162351 292.550125 173.356238 2.238939474 0.213215 47 74 1760 Leu7 LeuTAA 3_flank no 284 26.683921 291.187733 158.935827 2.201221806 -0.187862 47 75 21405 Pro8 spliced yes 40 25 37 88.173379 345.927271 217.050325 2.33656044 0.002098 47 76 16538 YER131W intron no 461 381 401 28.734554 296.254838 162.494696 2.21083919 -0.095795 47 77 5674 snR34 snR34 yes 750 291 307 34.737368 285.259617 159.9984925 2.204115891 0.182337 47 78 13855 MT_COB bi2 no 7308 2011 2030 27.97365 327.797456 177.885553 2.250140678 -0.297707 47 79 12052 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7146 7159 32.925298 278.815572 155.870435 2.192763747 0.170463 47 80 21496 copy of SH2289 no 292 27.952766 309.236931 168.5948485 2.2268443 -0.195765 47 81 19269 YPL143W intron no 625 261 279 34.660194 303.168033 168.9141135 2.227665938 0.030943 47 82 19967 YBL072C spliced yes 40 1 17 130.092531 347.979529 239.03603 2.378463367 0.24269 47 83 8438 snoRNA cluster 5 intergenic/snR128 no 586 356 372 38.013091 300.073052 169.0430715 2.227997375 0.088233 47 84 2942 Ser1 SerAGA_i 5_flank no 283 30.056532 313.780954 171.918743 2.235323227 -0.142254 47 85 11972 "rRNA(18S,5.8S,25S)" 25S yes 7956 6746 6764 140.303546 482.851939 311.5777425 2.493566426 -0.384824 47 86 10601 RUF8 RUF8 yes 1151 931 947 41.95771 310.003187 175.9804485 2.24546442 0.007632 47 87 927 Glu3 GluTTC_ii 3_flank no 272 40.784374 301.483563 171.1339685 2.233336222 0.081555 47 88 5432 snR31 3_flank no 425 31.216965 273.234478 152.2257215 2.182488041 0.140667 47 89 14190 MT_COB exon6 yes 7308 7036 7057 29.217051 310.671191 169.944121 2.230306145 -0.153496 47 90 961 Gly1 GlyCCC_i tRNA yes 272 56 68 57.050537 277.965208 167.5078725 2.224035223 0.360973 47 91 15736 YBR230C 3_exon no 197 181 195 58.780949 318.29278 188.5368645 2.27539628 0.018987 47 92 17795 YKL186C intron no 249 161 175 40.115427 305.938008 173.0267175 2.238113169 0.039064 47 93 9620 RUF3 3_flank no 631 29.028319 299.20885 164.1185845 2.215157763 -0.093203 47 94 5515 snR32 3_flank no 388 32.759726 269.725969 151.2428475 2.179674845 0.226223 47 95 19878 Negative Control no 60 NA #VALUE! 32.760331 325.351893 179.056112 2.25298915 -0.166925 47 96 17676 YKL006W 5_exon no 498 21 38 28.987489 254.548799 141.768144 2.151578654 0.110601 47 97 19454 CYC1 CYC1 yes 400 181 203 30.662921 295.698253 163.180587 2.212668491 -0.012112 47 98 5118 snR11 snR11 yes 458 191 207 39.544324 329.68198 184.613152 2.266262637 -0.169624 47 99 4958 snR9 3_flank no 387 31.013526 292.323661 161.6685935 2.20862566 0.020892 47 100 1364 Ile3 IleTAT_ii 3_flank no 333 36.979233 318.895453 177.937343 2.250267101 -0.084269 47 101 21635 copy of SH8140 no 743 81.097322 371.704186 226.400754 2.354877869 -0.212181 47 102 13498 MT_COX1 intronic no 13084 11671 11693 27.541669 286.824377 157.183023 2.196405637 -0.118598 47 103 8180 snoRNA cluster 3; snR70 yes 743 411 428 28.232227 300.845289 164.538758 2.216268215 -0.143673 47 104 661 Gln2 GlnTTG_i 3_flank no 272 52.046968 305.983964 179.015466 2.252890553 0.084913 48 2 5655 snR34 snR34 yes 750 196 218 29.917975 331.397219 180.657597 2.256856229 -0.250003 48 3 6255 snR42 snR42 yes 551 56 77 35.914855 335.207438 185.5611465 2.268487047 -0.226322 48 4 13411 MT_COX1 intronic no 13084 10366 10383 31.686608 326.053706 178.870157 2.252537888 -0.186048 48 5 12419 5S rRNA NTS2 no 1420 1051 1068 31.537277 274.10884 152.8230585 2.184188887 0.152274 48 6 6477 snR45 3_flank no 372 27.394893 281.119186 154.2570395 2.188244992 -0.100168 48 7 15127 MT_Phe 5_flank/tRNA no 265 91 112 29.255612 292.163616 160.709614 2.206041858 -0.049355 48 8 20636 YHR141C spliced yes 40 9 26 29.139367 284.767346 156.9533565 2.195770608 -0.021396 48 9 16273 YDR447C intron no 414 141 155 44.899638 305.000779 174.9502085 2.242914464 0.061907 48 10 7352 snR68 5_flank/snR68 no 336 32.964859 272.533311 152.749085 2.183978617 0.213677 48 11 19182 YPL079W intron no 521 321 338 44.877441 333.948546 189.4129935 2.277409768 -0.182349 48 12 3167 Ser5 SerTGA 5_flank no 282 33.082984 298.639101 165.8610425 2.219744391 0.048856 48 13 6905 snR56 3_flank no 288 29.276332 281.989526 155.632929 2.192101491 -0.001057 48 14 19004 YOR122C 3_exon no 309 261 280 29.502637 304.31128 166.9069585 2.222474443 -0.105256 48 15 4438 telomerase RNA telomerase yes 1501 1226 1242 29.804798 291.501658 160.653228 2.205889456 -0.017437 48 16 18424 YMR133W 3_exon no 225 201 217 32.217561 288.401428 160.3094945 2.204959245 0.085536 48 17 13672 MT_ATP6 ATP6/3_flank no 980 886 914 28.491244 322.61669 175.553967 2.244410648 -0.249231 48 18 9467 RUF2 RUF2 yes 468 176 193 35.13731 331.542794 183.340052 2.26325735 -0.197606 48 19 17255 YHR097C 3_exon no 224 201 213 33.356151 278.258984 155.8075675 2.192588547 0.187718 48 20 12978 MT_COX1 ai2 no 13084 3871 3890 29.298887 312.736152 171.0175195 2.233040603 -0.162772 48 21 20076 YCR031C spliced yes 40 5 17 50.819673 309.171381 179.995527 2.255261713 0.051696 48 22 7412 snR69 5_flank no 301 33.618079 277.372964 155.4955215 2.191717885 0.201758 48 23 14284 MT_VAR1 VAR1 yes 1467 466 492 27.138951 322.086516 174.6127335 2.242075911 -0.29698 48 24 20423 YGL031C spliced yes 40 13 30 37.653119 329.569815 183.611467 2.2638998 -0.174615 48 25 15378 YBL027W intron no 484 321 338 31.170689 276.050684 153.6106865 2.18642143 0.124707 48 26 9036 snR17a / U3a U3a yes 690 466 480 93.497322 349.87139 221.684356 2.345735047 0.011027 48 27 12300 5S rRNA NTS2 no 1420 456 470 35.275547 278.600254 156.9379005 2.195727838 0.243883 48 28 20722 YJL136C spliced yes 40 21 40 33.145975 302.895002 168.0204885 2.225362243 0.014673 48 29 20649 YIL004C spliced yes 40 9 26 33.121252 311.61674 172.368996 2.236459152 -0.055792 48 30 12985 MT_COX1 ai2 no 13084 3976 3995 30.955994 307.352035 169.1540145 2.228282309 -0.073348 48 31 11905 "rRNA(18S,5.8S,25S)" 25S yes 7956 6411 6428 35.033261 293.669772 164.3515165 2.215773716 0.114041 48 32 11101 "rRNA(18S,5.8S,25S)" 18S yes 7956 2391 2404 180.409647 613.344869 396.877258 2.598656214 -0.634841 48 33 8609 snR19 / U1 RNA U1 yes 868 541 557 38.767187 315.902631 177.334909 2.248794236 -0.053612 48 34 11230 "rRNA(18S,5.8S,25S)" ITS1/5.8S no 7956 3036 3061 29.254008 321.606495 175.4302515 2.244104486 -0.215868 48 35 8389 snoRNA cluster 5 snR190 yes 586 111 128 34.225195 299.400352 166.8127735 2.222229303 0.056618 48 36 5753 snR35 5_flank no 740 32.08099 289.983498 161.032244 2.206912845 0.071028 48 37 4228 telomerase RNA telomerase yes 1501 176 193 32.05301 279.689814 155.871412 2.19276647 0.136662 48 38 20233 YDR139C spliced yes 40 13 35 30.038203 297.36873 163.7034665 2.214057876 -0.043979 48 39 2619 Pro3 ProTGG_ii tRNA-intron no 303 i20 i27 54.735091 345.049204 199.8921475 2.300795734 -0.210553 48 40 18821 YNL302C intron no 651 241 257 163.2562 457.081373 310.1687865 2.491598091 -0.143117 48 41 12370 5S rRNA NTS2 no 1420 806 818 78.721038 308.884621 193.8028295 2.287360113 0.2109 48 42 3558 Tyr2 TyrGTA_ii tRNA yes 289 45 57 74.696522 366.793377 220.7449495 2.343890776 -0.225409 48 43 10640 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 86 99 244.282195 535.32823 389.8052125 2.590847642 -0.082684 48 44 12477 5S rRNA 5S yes 1420 1341 1356 339.684948 477.309342 408.497145 2.611189026 0.467435 48 45 13775 MT_COB intronic no 7308 811 832 32.136166 319.297449 175.7168075 2.244813304 -0.128468 48 46 13654 MT_ATP6 ATP6 yes 980 616 635 32.077555 301.410897 166.744226 2.222050804 -0.000246 48 47 11100 "rRNA(18S,5.8S,25S)" 18S yes 7956 2386 2399 563.922343 650.890861 607.406602 2.783479508 0.495516 48 48 8036 snoRNA cluster 2 snR55/intergenic no 739 416 433 46.422721 301.219803 173.821262 2.240102899 0.100874 48 49 3497 Tyr1 TyrGTA_i tRNA/intron no 289 24 i3 32.200787 299.182235 165.691511 2.219300258 0.017422 48 50 10185 RUF6 RUF6 yes 1251 771 787 32.368676 279.462035 155.9153555 2.192888889 0.148395 48 51 13721 MT_COB 5_flank no 7308 1 29 28.434762 304.826187 166.6304745 2.221754431 -0.150071 48 52 2810 Pro6 ProTGG_v 3_flank no 302 31.732047 308.262641 169.997344 2.230442136 -0.05294 48 53 14032 MT_COB bi4 no 7308 4666 4690 28.758553 314.450614 171.6045835 2.234528884 -0.192276 48 54 16687 YGL030W intron no 330 201 220 30.960279 356.842403 193.901341 2.287580813 -0.418643 48 55 14222 MT_ATP9 ATP9 yes 431 226 245 31.022154 318.984678 175.003416 2.243046526 -0.140654 48 56 19702 Negative Control no 60 NA #VALUE! 56.483791 301.795826 179.1398085 2.253192106 0.143876 48 57 11600 "rRNA(18S,5.8S,25S)" 25S yes 7956 4886 4906 757.4402 2336.650405 1547.045303 3.189503031 -1.247762 48 58 12775 MT_COX1 ai1 no 13084 826 848 33.158435 327.291135 180.224785 2.255814516 -0.17661 48 59 12208 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7926 7953 37313.07429 12444.28357 24878.67893 4.395827315 0.845283 48 60 9305 RUF1 RUF1 yes 750 101 118 37.290493 316.719232 177.0048625 2.247985197 -0.064371 48 61 7536 snR79 snR79 yes 284 21 38 30.864725 314.404184 172.6344545 2.237127477 -0.1182 48 62 3789 RNaseP 5_flank no 569 32.788941 273.607187 153.198064 2.185253277 0.200849 48 63 7384 snR68 3_flank no 336 32.561303 318.952955 175.757129 2.24491295 -0.120358 48 64 8588 snR19 / U1 RNA U1 yes 868 436 453 36.418908 324.728569 180.5737385 2.25665459 -0.13631 48 65 5230 snR30 snR30 yes 801 1 16 48.417945 317.11394 182.7659425 2.26189527 -0.027154 48 66 5682 snR34 snR34 yes 750 331 347 33.822528 279.091863 156.4571955 2.194395541 0.196714 48 67 3251 Thr1 ThrAGT 3_flank no 273 27.577133 299.049627 163.31338 2.213021767 -0.172179 48 68 14103 MT_COB bi4 no 7308 5731 5750 29.422171 294.277662 161.8499165 2.20911248 -0.050134 48 69 11432 "rRNA(18S,5.8S,25S)" 25S yes 7956 4046 4061 52.254854 314.549649 183.4022515 2.263404663 0.013636 48 70 2688 Pro4 ProTGG_iii 3_flank no 302 29.14325 311.414839 170.2790445 2.231161205 -0.160539 48 71 13543 MT_COX1 intronic no 13084 12346 12368 38.880903 366.464413 202.672658 2.306795163 -0.462165 48 72 9663 RUF4 RUF4 yes 988 91 105 114.057505 350.932636 232.4950705 2.366413749 0.131739 48 73 2710 Pro5 ProTGG_iv 5_flank no 303 75.251592 350.882176 213.066884 2.328515955 -0.11684 48 74 722 Gln3 GlnTTG_ii 3_flank no 272 28.823738 307.909861 168.3667995 2.226256456 -0.15121 48 75 10152 RUF6 RUF6 yes 1251 606 628 28.911034 310.998948 169.954991 2.230333923 -0.166432 48 76 6747 snR50 5_flank no 290 64.840458 292.059388 178.449923 2.251516365 0.27149 48 77 7510 snR71 3_flank no 290 31.219544 317.264836 174.24219 2.241153321 -0.124668 48 78 14631 MT_21S Sce1 no 4639 3676 3700 31.356671 333.680408 182.5185395 2.261306985 -0.247524 48 79 18626 YNL096C intron no 445 141 158 29.397999 285.064135 157.231067 2.196538362 -0.009053 48 80 18072 YLR344W intron no 547 201 218 33.29126 313.429276 173.360268 2.23894957 -0.068005 48 81 807 Glu1 GluCTC tRNA yes 272 51 63 35.043354 258.833318 146.938336 2.167135117 0.372486 48 82 15870 YDL079C intron no 392 321 342 26.875706 307.042657 166.9591815 2.222610307 -0.247335 48 83 15423 YBL072C 5_exon no 408 21 38 32.3846 281.649022 157.016811 2.195946153 0.134556 48 84 3176 Ser5 SerTGA tRNA yes 282 1 13 261.398488 538.144106 399.771297 2.601811609 -0.024694 48 85 17434 YIL133C intron no 390 161 173 56.527696 295.691383 176.1095395 2.245782881 0.197004 48 86 12118 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7476 7493 42.776888 317.315918 180.046403 2.255384449 -0.053567 48 87 18661 YNL112W intron no 1102 401 418 33.111313 322.02561 177.5684615 2.249365832 -0.137117 48 88 2986 Ser1 SerAGA_i 3_flank no 283 31.0818 288.178326 159.630063 2.203114685 0.049485 48 89 10232 RUF6 RUF6 yes 1251 1006 1023 32.827403 317.784002 175.3057025 2.243796043 -0.107914 48 90 15160 MT_Val 5_flank no 276 76 95 27.220359 305.55007 166.3852145 2.221114731 -0.221047 48 91 10397 RUF8 5_flank no 1151 80.224782 317.036997 198.6308895 2.298046787 0.157615 48 92 16866 YGL187C intron no 442 181 203 29.135972 294.02693 161.581451 2.208391504 -0.064187 48 93 8685 LSR1 / U2 RNA U2 yes 1375 66 80 32.959107 291.268771 162.113939 2.209820358 0.091083 48 94 3151 Ser4 SerGCT 3_flank no 301 44.321722 290.399766 167.360744 2.223653598 0.19462 48 95 19287 YPL175W 5_exon no 200 1 17 31.24978 260.438925 145.8443525 2.163889617 0.206166 48 96 3636 Val2 ValAAC_ii 5_flank no 274 38.685417 273.285696 155.9855565 2.193084387 0.332884 48 97 10272 RUF7 5_flank no 700 29.163173 280.998352 155.0807625 2.190557928 -0.002385 48 98 18067 YLR344W intron no 547 101 120 28.902315 345.01872 186.9605175 2.271749901 -0.363851 48 99 20456 YGL178W spliced yes 40 5 22 30.412069 316.876057 173.644063 2.239659939 -0.148046 48 100 5567 snR33 snR33 yes 383 121 135 49.13258 319.383048 184.257814 2.265425914 -0.042377 48 101 5163 snR13 5_flank no 324 33.36215 307.930247 170.6461985 2.232096618 -0.02338 48 102 10231 RUF6 RUF6 yes 1251 1001 1020 29.52934 290.533646 160.031493 2.204205457 -0.027435 48 103 11364 "rRNA(18S,5.8S,25S)" 25S yes 7956 3706 3723 2133.492531 3265.841142 2699.666837 3.431310172 -0.435079 48 104 3145 Ser4 SerGCT 3_flank no 301 64.229724 313.346528 188.788126 2.275974675 0.090227 49 2 12243 5S rRNA NTS2 no 1420 171 191 29.741619 325.169176 177.4553975 2.249089213 -0.21889 49 3 19248 YPL129W exon/intron no 205 41 57 37.770637 316.402216 177.0864265 2.248185274 -0.060405 49 4 20542 YGR214W spliced yes 40 5 21 33.574777 342.078123 187.82645 2.27375675 -0.289165 49 5 3585 Val1 ValAAC_i 5_flank no 274 33.451936 301.866674 167.659305 2.224427662 0.026882 49 6 16346 YDR500C intron no 439 201 215 31.335345 260.938971 146.137158 2.164760657 0.20786 49 7 20 Ala1 AlaAGC 5_flank/tRNA no 273 80.207302 363.23297 221.720136 2.345805136 -0.164078 49 8 3950 RNase MRP RNaseMRP yes 540 166 180 39.080108 280.952551 160.0163295 2.204164304 0.268711 49 9 10507 RUF8 RUF8 yes 1151 461 482 27.118807 321.884959 174.501883 2.241800118 -0.296602 49 10 16359 YEL012W 5_exon no 223 21 35 116.681314 451.001529 283.8414215 2.453075773 -0.392704 49 11 17630 YJR094W intron no 375 201 216 35.027162 298.905587 166.9663745 2.222629017 0.070296 49 12 14879 MT_Ala 5_flank/tRNA no 276 91 110 30.170716 320.774743 175.4727295 2.244209632 -0.178881 49 13 8097 snoRNA cluster 2 3_flank no 739 721 738 33.331561 287.664489 160.498025 2.205469693 0.125743 49 14 3664 Val2 ValAAC_ii tRNA yes 274 60 72 95.986895 367.5946 231.7907475 2.365096096 -0.084973 49 15 18284 YML067C intron no 193 61 78 33.995336 323.342448 178.668892 2.252048944 -0.136292 49 16 10879 "rRNA(18S,5.8S,25S)" 18S yes 7956 1281 1296 3448.98615 4151.763195 3800.374673 3.579826415 -0.234209 49 17 19510 ACT1 ACT1 yes 401 101 117 32.852402 274.592803 153.7226025 2.186737728 0.196247 49 18 18477 YMR143W intron no 644 541 562 29.053018 275.323145 152.1880815 2.182380642 0.018904 49 19 19713 Negative Control no 60 NA #VALUE! 33.615504 302.505092 168.060298 2.225465129 0.02368 49 20 3250 Thr1 ThrAGT 3_flank no 273 35.968113 318.538154 177.2531335 2.248593921 -0.083668 49 21 14678 MT_21S 21S_rRNA4 yes 4639 4381 4403 29.572446 306.874828 168.223637 2.225887018 -0.118233 49 22 3906 RNase MRP 5_flank no 540 31.660478 294.60932 163.134899 2.212546878 0.028111 49 23 12108 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7426 7443 120.013591 409.764323 264.888957 2.423063853 -0.168036 49 24 17180 YHR021C intron no 650 181 197 48.425756 323.647562 186.036659 2.269598531 -0.08095 49 25 8657 LSR1 / U2 RNA 5_flank no 1375 31.182341 284.871698 158.0270195 2.198731349 0.074105 49 26 6119 snR39B 5_flank no 296 47.984462 307.420111 177.7022865 2.249693016 0.052592 49 27 3372 Thr4 ThrTGT_ii 5_flank no 272 33.089152 287.092804 160.090978 2.204366858 0.121784 49 28 828 Glu2 GluTTC_i 5_flank no 272 35.158624 328.845945 182.0022845 2.260076839 -0.17473 49 29 15676 YBR191W intron no 488 161 178 35.135741 307.132095 171.133918 2.233336093 0.004481 49 30 1952 Lys2 LysCTT_ii 5_flank no 273 28.794431 291.875889 160.33516 2.20502877 -0.072731 49 31 15717 YBR220C 3_exon no 521 501 515 32.887266 286.894827 159.8910465 2.203824145 0.116663 49 32 2234 Phe1 PheGAA_i intron/tRNA no 292 i9 43 34.810133 301.094443 167.952288 2.225185925 0.049691 49 33 19078 YOR293W intron no 537 321 339 34.593139 315.702761 175.14795 2.243405059 -0.069983 49 34 14796 MT_Lys; Arg1; Gly tRNALys yes 682 121 139 31.283067 298.207589 164.745328 2.216813107 -0.006763 49 35 14027 MT_COB exon4 yes 7308 4591 4613 32.129794 295.491515 163.8106545 2.214342146 0.037971 49 36 16082 YDR025W intron no 439 181 198 34.043557 286.004056 160.0238065 2.204184597 0.158472 49 37 11556 "rRNA(18S,5.8S,25S)" 25S yes 7956 4666 4679 10605.69671 12030.70055 11318.19863 4.053777311 -0.636194 49 38 21358 YPR187W spliced yes 40 21 37 36.014198 292.26075 164.137474 2.215207746 0.137362 49 39 18414 YMR133W 5_exon no 225 1 17 36.054269 307.730356 171.8923125 2.235256454 0.010357 49 40 6003 snR37 5_flank no 586 38.155956 320.113635 179.1347955 2.253179952 -0.092062 49 41 16993 YGR118W intron no 420 201 218 36.167867 313.431645 174.799756 2.242540822 -0.038007 49 42 199 Arg2 ArgACG_ii 3_flank no 273 32.111415 342.171775 187.141595 2.272170327 -0.299778 49 43 20844 YLR048W spliced yes 40 1 17 31.090756 289.27749 160.184123 2.204619468 0.042776 49 44 14845 MT_Asp 3_flank no 275 196 222 28.005332 298.061084 163.033208 2.212276074 -0.14383 49 45 2464 Phe5 PheGAA_v tRNA/3_flank no 291 29.995641 291.487376 160.7415085 2.20612804 -0.00868 49 46 18154 YLR426W 5_exon no 171 21 35 40.134672 271.686161 155.9104165 2.192875132 0.36262 49 47 16269 YDR447C intron no 414 61 77 64.697267 329.845639 197.271453 2.295064243 -0.035383 49 48 121 Arg1 ArgACG_i 5_flank no 273 29.965938 293.264959 161.6154485 2.208482872 -0.020908 49 49 20085 YCR097W spliced yes 40 13 35 34.140895 324.646146 179.3935205 2.253806753 -0.144467 49 50 12633 MT_15S 15S yes 1848 1246 1263 48.722434 306.602701 177.6625675 2.249595934 0.063369 49 51 9827 RUF5-1 5_flank no 975 28.332575 310.264882 169.2987285 2.228653696 -0.183186 49 52 16287 YDR450W 5_exon no 535 21 37 36.802471 279.995719 158.399095 2.199752696 0.252278 49 53 15638 YBR186W intron no 213 101 120 28.640103 303.540731 166.090417 2.220344575 -0.133264 49 54 1997 Lys3 LysTTT_i 5_flank no 296 36.055867 299.814711 167.935289 2.225141966 0.074776 49 55 10073 RUF6 RUF6 yes 1251 211 227 30.871066 269.666556 150.268811 2.17686885 0.140857 49 56 3499 Tyr1 TyrGTA_i tRNA/intron no 289 34 i14 37.185855 318.573184 177.8795195 2.250125948 -0.080935 49 57 6406 snR43 3_flank no 409 35.085819 284.247474 159.6666465 2.203214204 0.195254 49 58 20390 YFL039C spliced yes 40 1 20 32.983014 295.706552 164.344783 2.215755922 0.064 49 59 9799 RUF4 RUF4/3_flank no 988 43.494443 316.266633 179.880538 2.254984178 -0.042113 49 60 2391 Phe4 PheGAA_iv tRNA yes 291 6 22 83.484423 332.668386 208.0764045 2.318222835 0.06369 49 61 2611 Pro3 ProTGG_ii tRNA yes 303 6 23 139.842445 376.132383 257.987414 2.411598519 0.130725 49 62 14650 MT_21S 21S_rRNA4 yes 4639 3961 3977 223.237249 409.382023 316.309636 2.500112422 0.355567 49 63 12452 5S rRNA NTS2 no 1420 1216 1230 51.246373 284.104028 167.6752005 2.224468834 0.276957 49 64 4726 snR4 snR4 yes 386 166 184 38.462152 332.585481 185.5238165 2.26839967 -0.197627 49 65 11856 "rRNA(18S,5.8S,25S)" 25S yes 7956 6166 6184 45072.11871 12918.7565 28995.4376 4.462329668 1.01449 49 66 16633 YFR024C 5_exon no 218 1 18 33.819667 304.725638 169.2726525 2.2285868 0.008113 49 67 18200 YML024W intron no 498 301 320 33.604203 291.651156 162.6276795 2.211194465 0.108908 49 68 14612 MT_21S Sce1 no 4639 3391 3410 29.431164 302.885541 166.1583525 2.220522177 -0.099142 49 69 9971 RUF5-1 RUF5-1 yes 975 661 677 64.387393 336.61968 200.5035365 2.302122037 -0.087531 49 70 1137 His1 HisGTG 5_flank no 272 33.164245 319.217759 176.191002 2.245983725 -0.114812 49 71 21911 copy of SH19564 no 401 29.096975 278.476894 153.7869345 2.18691944 0.006087 49 72 10162 RUF6 RUF6 yes 1251 656 670 30.991346 289.459672 160.225509 2.20473166 0.038273 49 73 15780 YDL012C 3_exon no 186 141 153 44.803946 270.259907 157.5319265 2.197368584 0.395619 49 74 7290 snR66 5_flank no 286 29.046055 309.397559 169.221807 2.228456328 -0.152061 49 75 11981 "rRNA(18S,5.8S,25S)" 25S yes 7956 6791 6808 39.114667 284.922089 162.018378 2.20956428 0.234404 49 76 14656 MT_21S 21S_rRNA4 yes 4639 4051 4067 39.385959 303.243299 171.314629 2.23379445 0.062108 49 77 7349 snR68 5_flank no 336 31.615444 266.551481 149.0834625 2.173429471 0.193349 49 78 18167 YLR448W intron no 484 121 138 35.834375 311.098011 173.466193 2.239214847 -0.019074 49 79 14785 MT_ORF11; Leu; Gln 3_flank no 716 661 689 27.796412 308.060918 167.928665 2.225124835 -0.199406 49 80 2666 Pro4 ProTGG_iii 5_flank/tRNA no 302 89.436956 328.868398 209.152677 2.320463428 0.127842 49 81 1648 Leu5 LeuCAA_v tRNA/3_flank no 315 29.495826 294.652005 162.0739155 2.209713124 -0.047942 49 82 21306 YPL218W spliced yes 40 21 36 67.055747 324.390388 195.7230675 2.291642014 0.020756 49 83 15017 MT_COX 2; ORF1 cox2/ORF1exon1 no 2427 856 882 28.786106 304.542347 166.6642265 2.221842391 -0.132327 49 84 5140 snR11 3_flank no 458 65.311913 311.995304 188.6536085 2.275665117 0.107117 49 85 19929 YBL018C spliced yes 40 17 34 29.955351 270.181769 150.06856 2.176289715 0.091529 49 86 17973 YLR185W 3_exon no 459 441 456 63.830702 298.692587 181.2616445 2.258305916 0.209104 49 87 8196 snoRNA cluster 3; intergenic no 743 491 510 29.390698 304.030576 166.710637 2.221963311 -0.107526 49 88 8618 snR19 / U1 RNA U1 yes 868 586 601 49.756767 295.447626 172.6021965 2.237046318 0.166362 49 89 3071 Ser3 SerCGA tRNA yes 301 i14 46 51.447786 309.863849 180.6558175 2.256851951 0.048807 49 90 1006 Gly2 GlyCCC_ii tRNA yes 272 21 38 40.213596 327.408577 183.8110865 2.264371702 -0.148253 49 91 319 Arg5 ArgTCT 5_flank no 272 54.294575 303.847643 179.071109 2.253025523 0.114606 49 92 8009 snoRNA cluster 2 intergenic no 739 281 302 31.111819 310.803793 170.957806 2.232888936 -0.088667 49 93 12666 MT_15S 15S/3_flank no 1848 1741 1763 31.278155 317.530353 174.404254 2.241557074 -0.125958 49 94 14636 MT_21S Sce1 no 4639 3751 3770 33.319164 278.085127 155.7021455 2.192294597 0.18771 49 95 5851 snR35 snR35 yes 740 441 457 100.346964 377.037034 238.691999 2.377837862 -0.113185 49 96 10177 RUF6 RUF6 yes 1251 731 752 29.613204 285.559157 157.5861805 2.197518129 -0.000031 49 97 11584 "rRNA(18S,5.8S,25S)" 25S yes 7956 4806 4819 3266.266224 3814.536633 3540.401429 3.549052507 -0.160724 49 98 6303 snR42 snR42 yes 551 296 313 31.06053 365.503003 198.2817665 2.297282779 -0.481339 49 99 20046 YBR191W spliced yes 40 1 17 105.103217 385.681988 245.3926025 2.389861467 -0.131943 49 100 1837 Leu9 LeuTAG_ii 5_flank no 301 54.241836 293.554214 173.898025 2.24029465 0.204531 49 101 12075 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7261 7281 31.886774 314.087258 172.987016 2.238013507 -0.091035 49 102 7540 snR79 snR79 yes 284 41 57 46.099184 292.654346 169.376765 2.228853834 0.179007 49 103 11218 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2976 2997 31.429435 328.113575 179.771505 2.254720854 -0.204986 49 104 6927 snR58 5_flank/snR58 no 296 29.472505 303.729359 166.600932 2.221677427 -0.102799 50 2 19251 YPL129W intron no 205 101 122 29.421529 379.697578 204.5595535 2.310819767 -0.593174 50 3 12812 MT_COX1 ai1 no 13084 1381 1398 39.43086 344.899709 192.1652845 2.283674933 -0.29381 50 4 4940 snR9 snR9 yes 387 106 123 33.301161 302.682698 167.9919295 2.225288418 0.01834 50 5 6264 snR42 snR42 yes 551 101 116 49.259823 299.746142 174.5029825 2.241802854 0.125767 50 6 18134 YLR406C intron no 449 61 78 29.206422 255.090038 142.14823 2.152741456 0.121548 50 7 16350 YDR500C intron no 439 281 297 80.973997 325.354936 203.1644665 2.307847752 0.100013 50 8 14780 MT_ORF11; Leu; Gln tRNAGln yes 716 586 605 31.103041 277.588091 154.345566 2.188494158 0.113936 50 9 4330 telomerase RNA telomerase yes 1501 686 702 85.64251 389.815707 237.7291085 2.376082362 -0.288793 50 10 9597 RUF3 RUF3 yes 631 371 392 29.079845 291.826753 160.453299 2.205348651 -0.057182 50 11 16293 YDR450W intron no 535 141 157 31.078918 281.518583 156.2987505 2.193955506 0.092436 50 12 2406 Phe4 PheGAA_iv tRNA/3_flank no 291 29.180602 283.375417 156.2780095 2.193897871 -0.012674 50 13 21717 copy of SH11502 no 7956 59.416778 306.789097 183.1029375 2.262695312 0.116419 50 14 7662 snoRNA cluster1 snR78 yes 1574 106 127 31.604216 325.038515 178.3213655 2.251203381 -0.17942 50 15 18917 YOL121C 5_exon no 490 1 17 46.274279 305.967911 176.121095 2.245811377 0.057518 50 16 10693 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 351 368 38.650875 305.343995 171.997435 2.23552197 0.041099 50 17 12422 5S rRNA NTS2 no 1420 1066 1082 37.144434 307.957638 172.551036 2.236917571 0.013654 50 18 9248 snR6 / U6 RNA U6/3_flank no 312 35.539306 303.360799 169.4500525 2.229041708 0.039743 50 19 19945 YBL040C spliced yes 40 13 32 29.484089 300.952323 165.218206 2.218057902 -0.085477 50 20 19483 ADH1 ADH1 yes 400 361 377 38.307742 305.613143 171.9604425 2.235428554 0.037823 50 21 1384 Leu1 LeuCAA_i 5_flank/tRNA no 315 34.027086 297.478817 165.7529515 2.21946127 0.070127 50 22 12996 MT_COX1 ai2 no 13084 4141 4162 38.246036 334.348664 186.29735 2.270206677 -0.212933 50 23 15145 MT_Thr1 tRNA yes 272 106 128 29.442728 295.61158 162.527154 2.210925931 -0.055072 50 24 9196 snR7 U5 RNA 3_flank no 415 31.352879 300.382117 165.867498 2.219761294 -0.017812 50 25 8313 snoRNA cluster4 intergenic no 638 351 370 39.595597 296.473986 168.0347915 2.225399211 0.125672 50 26 10631 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 41 60 30.95494 296.590755 163.7728475 2.2142419 -0.007764 50 27 7248 snR65 snR65 yes 300 16 36 30.846209 311.876995 171.361602 2.233913514 -0.103967 50 28 12851 MT_COX1 ai1 no 13084 1966 1988 30.797975 328.749897 179.773936 2.254726727 -0.218178 50 29 14323 MT_VAR1 VAR1 yes 1467 1051 1075 30.782539 304.975116 167.8788275 2.224995927 -0.064922 50 30 280 Arg4 ArgCCT 5_flank/tRNA no 272 39.129377 315.083799 177.106588 2.248234716 -0.045511 50 31 18950 YOL127W intron no 514 181 199 32.785414 322.96616 177.875787 2.250116835 -0.14842 50 32 11006 "rRNA(18S,5.8S,25S)" 18S yes 7956 1916 1932 7550.302631 12329.19196 9939.747297 3.997375343 -1.091541 50 33 2751 Pro5 ProTGG_iv 3_flank no 303 30.419502 278.098692 154.259097 2.188250785 0.076961 50 34 12459 5S rRNA 5S yes 1420 1251 1265 961.111945 1146.249156 1053.680551 3.022708964 0.197407 50 35 20798 YKL157W spliced yes 40 9 28 40.293493 323.357773 181.825633 2.259655108 -0.113822 50 36 2099 Lys4 LysTTT_ii 3_flank no 296 56.509729 311.398268 183.9539985 2.264709232 0.062931 50 37 8052 snoRNA cluster 2 intergenic no 739 496 515 31.892121 288.335739 160.11393 2.204429117 0.075354 50 38 12166 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7716 7733 140.691476 432.026843 286.3591595 2.456911079 -0.154294 50 39 12095 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7361 7386 29.865903 323.009277 176.43759 2.246591117 -0.202265 50 40 19110 YOR312C intron no 507 421 442 29.907882 286.075657 157.9917695 2.198634463 0.012948 50 41 7002 snR60 snR60/3_flank no 304 38.099707 280.813051 159.456379 2.202641898 0.259418 50 42 774 Gln4 GlnTTG_iii 3_flank no 272 32.023415 336.549656 184.2865355 2.265493606 -0.259971 50 43 11594 "rRNA(18S,5.8S,25S)" 25S yes 7956 4856 4869 34.075869 257.317197 145.696533 2.163449217 0.354067 50 44 6138 snR39B snR39B yes 296 31 47 46.329225 304.462665 175.395945 2.244019549 0.071214 50 45 16291 YDR450W intron no 535 101 120 46.280027 343.192629 194.736328 2.289446977 -0.24687 50 46 7180 snR64 5_flank no 301 70.854282 339.093065 204.9736735 2.311698085 -0.064155 50 47 1507 Leu3 LeuCAA_iii tRNA yes 314 6 19 51775.79966 14037.58619 32906.69292 4.517284238 1.046475 50 48 18698 YNL130C exon/intron no 541 41 57 33.995272 285.799099 159.8971855 2.203840819 0.15831 50 49 1781 Leu8 LeuTAG_i 5_flank no 301 34.083308 321.93256 178.007934 2.25043936 -0.124422 50 50 1815 Leu8 LeuTAG_i tRNA/3_flank no 301 36.278839 304.306192 170.2925155 2.231195561 0.040581 50 51 6233 snR42 5_flank no 551 46.799369 312.7916 179.7954845 2.25477878 0.000724 50 52 19130 YPL075W intron no 851 121 138 34.600739 281.331733 157.966236 2.19856427 0.205751 50 53 15301 YAL001C 5_exon no 190 1 17 32.674611 304.483452 168.5790315 2.226803554 -0.004184 50 54 20914 YLR333C spliced yes 40 21 40 53.695099 324.98102 189.3380595 2.277237922 -0.06275 50 55 14517 MT_21S 21S_rRNA3 yes 4639 1966 1984 848.836523 711.001436 779.9189795 2.892049489 0.833069 50 56 10883 "rRNA(18S,5.8S,25S)" 18S yes 7956 1301 1316 50547.4759 13009.70717 31778.59154 4.502134645 1.143292 50 57 1145 His1 HisGTG 5_flank no 272 32.792984 301.862385 167.3276845 2.223567801 0.018679 50 58 117 Arg1 ArgACG_i 5_flank no 273 36.96373 281.547615 159.2556725 2.20209491 0.240428 50 59 21876 copy of SH18251 no 226 39.053912 316.957267 178.0055895 2.25043364 -0.062251 50 60 17079 YGR225W 3_exon no 193 161 176 34.860608 289.253502 162.057055 2.209667942 0.149442 50 61 20309 YER007C-A spliced yes 40 1 18 45.27194 368.712834 206.992387 2.315954373 -0.440205 50 62 1174 His1 HisGTG 3_flank no 272 28.491241 314.575773 171.533507 2.234348967 -0.20276 50 63 1509 Leu3 LeuCAA_iii tRNA yes 314 16 27 34.564007 261.847133 148.20557 2.170864526 0.336789 50 64 2375 Phe4 PheGAA_iv 5_flank no 291 86.943093 331.019658 208.9813755 2.320107583 0.097273 50 65 302 Arg4 ArgCCT 3_flank no 272 36.161819 322.770393 179.466106 2.25398244 -0.120057 50 66 18117 YLR367W 3_exon no 583 561 575 48.140188 272.864674 160.502431 2.205481615 0.377229 50 67 11717 "rRNA(18S,5.8S,25S)" 25S yes 7956 5471 5484 76.404512 300.666699 188.5356055 2.27539338 0.262765 50 68 7135 snR63 snR63 yes 455 181 198 33.521845 307.701773 170.611809 2.232009088 -0.019569 50 69 11602 "rRNA(18S,5.8S,25S)" 25S yes 7956 4896 4916 45.433349 323.022316 184.2278325 2.265355243 -0.091511 50 70 21156 YNL265C spliced yes 40 21 38 33.293038 282.385583 157.8393105 2.198215175 0.158636 50 71 17514 YJL136C intron no 560 241 260 33.204488 315.340708 174.272598 2.241229106 -0.084111 50 72 9841 RUF5-1 RUF5-1 yes 975 11 32 27.198773 322.857785 175.028279 2.243108223 -0.299084 50 73 10020 RUF6 5_flank no 1251 137.612879 375.746989 256.679934 2.409391919 0.120487 50 74 12139 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7581 7599 30.254145 337.090133 183.672139 2.264043284 -0.28747 50 75 4697 snR4 snR4 yes 386 21 39 33.434236 304.588042 169.011139 2.227915329 0.004483 50 76 17236 YHR079C 5_exon no 186 1 18 38.760151 329.619359 184.189755 2.26526547 -0.171955 50 77 1222 Ile1 IleAAT tRNA/3_flank no 274 29.935736 307.771833 168.8537845 2.227510799 -0.110857 50 78 9998 RUF5-1 3_flank no 975 32.182682 295.090777 163.6367295 2.213880791 0.042187 50 79 12014 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6956 6978 28.173085 294.991382 161.5822335 2.208393607 -0.120765 50 80 5181 snR13 snR13 yes 324 61 77 30.15159 300.981064 165.566327 2.218972014 -0.062276 50 81 15652 YBR189W intron no 513 181 193 68.804167 304.792967 186.798567 2.27137354 0.185225 50 82 4516 U3b (snR17b) U3b yes 662 136 153 33.609886 305.666332 169.638109 2.229523423 -0.002081 50 83 17857 YKR095W intron/exon no 175 121 140 29.182503 301.690972 165.4367375 2.218631957 -0.100726 50 84 10530 RUF8 RUF8 yes 1151 576 597 33.635437 296.90026 165.2678485 2.218188373 0.070144 50 85 9057 snR14 / U4 RNA 5_flank no 360 32.192016 317.402034 174.797025 2.242534037 -0.113035 50 86 11231 "rRNA(18S,5.8S,25S)" ITS1/5.8S no 7956 3041 3064 45.143307 336.063235 190.603271 2.280130349 -0.197562 50 87 10699 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 381 398 29.56508 301.557327 165.5612035 2.218958575 -0.08631 50 88 6006 snR37 5_flank no 586 29.335547 279.864972 154.6002595 2.189210219 0.012153 50 89 12966 MT_COX1 ai2 no 13084 3691 3712 31.058148 325.725019 178.3915835 2.251374361 -0.191851 50 90 4574 U3b (snR17b) U3b yes 662 426 440 273.40666 1445.371424 859.389042 2.934189812 -1.719511 50 91 3969 RNase MRP RNaseMRP yes 540 261 278 30.152436 291.80739 160.979913 2.206771688 -0.005256 50 92 12877 MT_COX1 ai1 no 13084 2356 2378 31.230686 348.653637 189.9421615 2.278621376 -0.35767 50 93 14561 MT_21S 21S_rRNA3 yes 4639 2626 2638 52.217815 304.142714 178.1802645 2.250859599 0.101651 50 94 14077 MT_COB bi4 no 7308 5341 5362 29.725395 313.42462 171.5750075 2.234454027 -0.15173 50 95 18406 YMR125W intron no 422 261 278 27.942548 271.088683 149.5156155 2.174686553 -0.024605 50 96 16251 YDR397C intron no 192 61 80 27.94511 274.343514 151.144312 2.179391808 -0.037757 50 97 15082 MT_COX 2; ORF1 ORF1exon1 yes 2427 1831 1850 29.716634 344.005043 186.8608385 2.271518293 -0.345075 50 98 2501 Pro1 ProAGG 5_flank/tRNA no 272 261.596284 528.240351 394.9183175 2.596507278 0.011009 50 99 701 Gln3 GlnTTG_ii tRNA yes 272 36 48 47.869843 290.205423 169.037633 2.227983403 0.207425 50 100 10071 RUF6 RUF6 yes 1251 201 218 47.386444 329.581651 188.4840475 2.275274599 -0.134241 50 101 6085 snR37 snR37 yes 586 341 360 30.424175 319.504872 174.9645235 2.242949998 -0.162842 50 102 21065 YMR201C spliced yes 40 13 29 59.57944 281.18921 170.384325 2.231429638 0.342786 50 103 18128 YLR388W intron/exon no 258 201 218 30.017452 315.484532 172.750992 2.23742055 -0.153581 50 104 3913 RNase MRP 5_flank no 540 31.696983 264.569013 148.132998 2.170651812 0.207293 51 2 1575 Leu4 LeuCAA_iv tRNA-intron no 314 i8 i24 28.972252 305.815542 167.393897 2.22373962 -0.133278 51 3 4465 telomerase RNA 3_flank no 1501 38.885304 362.444427 200.6648655 2.302471338 -0.431893 51 4 1417 Leu1 LeuCAA_i 3_flank no 315 48.793262 312.058658 180.42596 2.256299025 0.017164 51 5 3640 Val2 ValAAC_ii 5_flank no 274 28.953963 315.744853 172.349408 2.236409796 -0.192767 51 6 10275 RUF7 5_flank/RUF7 no 700 28.978597 276.206014 152.5923055 2.183532635 0.010656 51 7 3248 Thr1 ThrAGT 3_flank no 273 32.953069 280.331836 156.6424525 2.194909474 0.161358 51 8 11282 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3296 3313 32.978588 297.187868 165.083228 2.217702952 0.05466 51 9 20216 YDR064W spliced yes 40 17 33 31.016352 317.554419 174.2853855 2.241260971 -0.131438 51 10 2238 Phe1 PheGAA_i tRNA yes 292 47 61 38.93765 283.606553 161.2721015 2.207559245 0.243963 51 11 1210 Ile1 IleAAT tRNA yes 274 11 24 77.787112 359.043609 218.4153605 2.339283178 -0.153426 51 12 8520 snR19 / U1 RNA U1 yes 868 96 113 31.106981 287.138183 159.122582 2.201731817 0.056988 51 13 20006 YBR082C spliced yes 40 5 22 35.238291 327.921435 181.579863 2.259067684 -0.166657 51 14 12777 MT_COX1 ai1 no 13084 856 878 31.520767 307.049985 169.285376 2.228619442 -0.052658 51 15 16783 YGL103W intron no 611 341 358 40.042827 309.639239 174.841033 2.242643364 0.005299 51 16 20240 YDR305C spliced yes 40 21 40 30.337136 298.180188 164.258662 2.215528281 -0.038656 51 17 11982 "rRNA(18S,5.8S,25S)" 25S yes 7956 6796 6813 64.537106 331.645088 198.091097 2.296864957 -0.04984 51 18 17346 YIL018W intron no 500 321 340 31.30301 285.370241 158.3366255 2.199581385 0.074919 51 19 20900 YLR306W spliced yes 40 13 32 29.519935 326.122541 177.821238 2.249983629 -0.232093 51 20 15245 MT_fMet tRNA yes 274 106 125 29.713739 297.22606 163.4698995 2.213437796 -0.054436 51 21 15760 YCR031C intron no 407 281 303 34.07506 327.425322 180.750191 2.257078765 -0.166332 51 22 10816 "rRNA(18S,5.8S,25S)" 18S yes 7956 966 983 8946.582485 14129.41144 11537.99696 4.06213042 -1.111534 51 23 8001 snoRNA cluster 2 intergenic no 739 241 258 31.563402 286.691483 159.1274425 2.201745083 0.075064 51 24 14362 MT_ORF9; ORF10 ORF9 yes 578 196 222 29.16155 307.305412 168.233481 2.225912431 -0.135425 51 25 13695 MT_ORF 5 3_flank no 331 271 283 39.437644 286.514625 162.9761345 2.212124013 0.220781 51 26 17559 YJL189W intron no 486 181 197 399.094804 1223.462972 811.278888 2.909170174 -0.987813 51 27 84 Ala2 AlaTGC tRNA yes 273 56 68 45.244535 274.715282 159.9799085 2.204065444 0.350826 51 28 13819 MT_COB bi2 no 7308 1471 1495 30.578268 324.117232 177.34775 2.248825683 -0.18607 51 29 13843 MT_COB bi2 no 7308 1831 1852 30.570751 284.185609 157.37818 2.196944519 0.055836 51 30 12784 MT_COX1 ai1 no 13084 961 989 28.504642 306.882942 167.693792 2.224516985 -0.156684 51 31 9855 RUF5-1 RUF5-1 yes 975 81 98 30.560364 264.006974 147.283669 2.168154594 0.153384 51 32 4784 snR5 snR5 yes 404 91 110 36.709569 316.238182 176.4738755 2.246680423 -0.061558 51 33 533 Cys1 CysGCA 5_flank no 272 30.369176 282.419862 156.394519 2.194221529 0.053856 51 34 21078 YMR230W spliced yes 40 17 32 57.033895 349.452374 203.2431345 2.308015884 -0.227931 51 35 12609 MT_15S 15S yes 1848 886 910 28.018242 310.043791 169.0310165 2.227966403 -0.195599 51 36 17846 YKR094C intron no 468 361 375 66.775478 301.607358 184.191418 2.265269391 0.200647 51 37 18421 YMR133W intron no 225 141 158 31.875042 284.266198 158.07062 2.198851157 0.100966 51 38 19039 YOR234C intron no 627 161 178 48.106809 289.45327 168.7800395 2.227321084 0.215246 51 39 18379 YMR116C intron no 373 81 98 31.853239 321.497923 176.675581 2.247176528 -0.149103 51 40 14482 MT_21S 21S_rRNA3 yes 4639 1441 1460 35.950692 299.737407 167.8440495 2.224905949 0.074204 51 41 4690 snR4 5_flank/snR4 no 386 44.157416 300.609367 172.3833915 2.236495421 0.099313 51 42 7073 snR62 3_flank no 300 36.048207 352.311633 194.17992 2.288204318 -0.364906 51 43 20807 YKL180W spliced yes 40 21 37 34.039059 296.481234 165.2601465 2.218168133 0.078574 51 44 14324 MT_VAR1 VAR1 yes 1467 1066 1090 29.975114 298.690734 164.332924 2.215724583 -0.054341 51 45 11098 "rRNA(18S,5.8S,25S)" 18S yes 7956 2376 2391 182.29629 344.977953 263.6371215 2.421006561 0.522514 51 46 4449 telomerase RNA telomerase yes 1501 1281 1298 31.976017 294.975001 163.475509 2.213452698 0.036183 51 47 16878 YGL187C 3_exon no 442 421 441 28.917189 300.616469 164.766829 2.216869784 -0.105413 51 48 8730 LSR1 / U2 RNA U2 yes 1375 291 308 34.010162 300.501333 167.2557475 2.223381051 0.044938 51 49 8003 snoRNA cluster 2 intergenic no 739 251 270 32.036379 286.276923 159.156651 2.201824792 0.09326 51 50 619 Gln1 GlnCTG 3_flank no 272 69.180118 417.228071 243.2040945 2.385970882 -0.568991 51 51 5318 snR30 snR30 yes 801 441 455 34.342015 266.321297 150.331656 2.177050442 0.298867 51 52 17880 YLR048W intron no 459 121 140 36.566213 312.639029 174.602621 2.242050759 -0.029933 51 53 18590 YNL050C 3_exon no 191 141 158 34.631342 315.438222 175.034782 2.243124358 -0.067454 51 54 13362 MT_COX1 intronic no 13084 9631 9655 30.558127 327.755898 179.1570125 2.253233812 -0.213932 51 55 8404 snoRNA cluster 5 snR190 yes 586 186 205 32.649968 349.083059 190.8665135 2.28072974 -0.348353 51 56 10613 RUF8 3_flank no 1151 47.209594 278.520976 162.865285 2.211828524 0.318171 51 57 1887 Leu9 LeuTAG_ii 3_flank no 301 36.754624 307.525344 172.139984 2.235881758 0.016616 51 58 14165 MT_COB intronic no 7308 6661 6673 33.620482 270.926288 152.273385 2.182624002 0.24513 51 59 13246 MT_COX1 ai4 no 13084 7891 7912 30.511113 341.123049 185.817081 2.269085633 -0.313359 51 60 1622 Leu5 LeuCAA_v 5_flank no 315 30.518982 315.776461 173.1477215 2.238416781 -0.137981 51 61 7944 snoRNA cluster1 3_flank no 1574 1516 1532 32.59007 287.430382 160.010226 2.204147739 0.10375 51 62 16497 YER117W intron no 571 121 138 36.704147 301.184213 168.94418 2.227743235 0.070892 51 63 21783 copy of SH14233 no 431 30.40664 322.004419 176.2055295 2.246019533 -0.177792 51 64 11440 "rRNA(18S,5.8S,25S)" 25S yes 7956 4086 4101 14935.13401 8435.189044 11685.16153 4.06763472 0.372733 51 65 13610 MT_ATP8/AAP1 3_flank no 347 286 314 30.115291 326.572733 178.344012 2.251258532 -0.213783 51 66 19169 YPL079W intron no 521 61 83 29.941451 307.196469 168.56896 2.226777607 -0.107212 51 67 19937 YBL027W spliced yes 40 5 23 62.378465 329.735439 196.056952 2.292382247 -0.049116 51 68 5296 snR30 snR30 yes 801 331 343 37.721872 276.401131 157.0615015 2.196069745 0.294427 51 69 17379 YIL052C intron no 572 481 500 29.546441 294.493371 162.019906 2.209568376 -0.044561 51 70 6095 snR37 3_flank no 586 29.458592 291.913716 160.686154 2.205978456 -0.037472 51 71 10385 RUF7 3_flank no 700 128.740845 319.283848 224.0123465 2.350271955 0.422831 51 72 10994 "rRNA(18S,5.8S,25S)" 18S yes 7956 1856 1875 11950.3236 13273.16327 12611.74343 4.100775127 -0.654092 51 73 17424 YIL111W 3_exon no 188 141 157 33.330567 272.880473 153.10552 2.184990849 0.222854 51 74 19180 YPL079W intron no 521 281 295 55.5707 316.076489 185.8235945 2.269100857 0.019358 51 75 12403 5S rRNA NTS2 no 1420 971 987 50.851762 300.980387 175.9160745 2.245305525 0.122731 51 76 7742 snoRNA cluster1 intergenic no 1574 506 522 29.90538 281.066063 155.4857215 2.191690513 0.036343 51 77 20522 YGR034W spliced yes 40 21 36 38.415492 287.112039 162.7637655 2.211557729 0.208013 51 78 6361 snR43 snR43 yes 409 46 63 44.963078 329.621644 187.292361 2.272520064 -0.147454 51 79 7495 snR71 3_flank no 290 28.519253 323.037574 175.7784135 2.24496554 -0.250605 51 80 2713 Pro5 ProTGG_iv 5_flank no 303 31.610731 273.852461 152.731596 2.18392889 0.157135 51 81 1632 Leu5 LeuCAA_v tRNA/intron no 315 25 i4 37.621047 311.246646 174.4338465 2.241630758 -0.014864 51 82 822 Glu1 GluCTC 3_flank no 272 38.255358 288.221603 163.2384805 2.212822544 0.196751 51 83 412 Asn1 AsnGTT 3_flank no 274 34.708753 315.301216 175.0049845 2.243050418 -0.065456 51 84 1401 Leu1 LeuCAA_i tRNA yes 315 42 50 775.818654 625.45097 700.634812 2.845491712 0.940716 51 85 20899 YLR306W spliced yes 40 9 31 28.757778 293.897519 161.3276485 2.207708804 -0.083902 51 86 3884 RNaseP 3_flank no 569 30.253468 305.489385 167.8714265 2.224976781 -0.086127 51 87 15470 YBL087C 3_exon no 604 561 573 60.463081 325.813279 193.13818 2.285868135 -0.02999 51 88 11471 "rRNA(18S,5.8S,25S)" 25S yes 7956 4241 4256 24454.85751 13973.51764 19214.18757 4.283622026 0.135603 51 89 4504 U3b (snR17b) U3b yes 662 76 92 31.235452 290.685597 160.9605245 2.206719379 0.038684 51 90 2638 Pro3 ProTGG_ii 3_flank no 303 34.88966 293.964637 164.4271485 2.215973525 0.10986 51 91 4125 SRP SRP yes 875 516 530 61.26687 299.819459 180.5431645 2.25658105 0.185005 51 92 19225 YPL090C intron no 494 61 78 36.978348 298.088923 167.5336355 2.224102013 0.099503 51 93 16527 YER131W intron no 461 161 178 29.658963 277.08015 153.3695565 2.185739162 0.042506 51 94 1746 Leu7 LeuTAA tRNA yes 284 25 40 41.276324 281.530971 161.4036475 2.207913345 0.273969 51 95 20915 YLR344W spliced yes 40 1 20 54.93368 304.570903 179.7522915 2.254674436 0.111924 51 96 15634 YBR186W 5_exon no 213 21 38 30.025551 272.791194 151.4083725 2.180149891 0.082367 51 97 21758 copy of SH13183 no 13084 52.93381 314.18419 183.559 2.263775683 0.020476 51 98 13006 MT_COX1 ai2 no 13084 4291 4313 31.633772 342.676229 187.1550005 2.272201435 -0.309624 51 99 465 Asp1 AspGTC_i 3_flank no 271 98.899745 312.311884 205.6058145 2.313035392 0.304545 51 100 10963 "rRNA(18S,5.8S,25S)" 18S yes 7956 1701 1718 382.838449 604.070233 493.454341 2.693246974 0.178172 51 101 1114 Gly4 GlyTCC tRNA yes 272 46 61 129.001277 350.447291 239.724284 2.37971203 0.221302 51 102 20674 YIL106W spliced yes 40 5 26 28.741871 265.482142 147.1120065 2.167648119 0.048625 51 103 3994 RNase MRP 3_flank no 540 28.587186 314.529599 171.5583925 2.234411968 -0.198979 51 104 6280 snR42 snR42 yes 551 181 197 1031.412191 842.781345 937.096768 2.97178444 0.78852 52 2 4044 SRP SRP yes 875 111 128 30.404576 312.748004 171.57629 2.234457273 -0.12416 52 3 13431 MT_COX1 intronic no 13084 10666 10690 30.411136 329.741033 180.0760845 2.255456039 -0.230852 52 4 5830 snR35 snR35 yes 740 336 353 53.972301 388.961102 221.4667015 2.345308437 -0.517926 52 5 21153 YNL265C spliced yes 40 9 26 30.530312 304.081714 167.306013 2.22351155 -0.068112 52 6 18347 YML124C intron no 398 261 278 28.685834 286.795288 157.740561 2.197943381 -0.055219 52 7 19459 CYC1 CYC1 yes 400 281 293 63.311696 308.409028 185.860362 2.269186779 0.125248 52 8 12262 5S rRNA NTS2 no 1420 266 278 131.470072 424.14048 277.805276 2.443740489 -0.170814 52 9 12538 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 466 478 56.673338 301.362457 179.0178975 2.252896452 0.14859 52 10 16449 YER074W 3_exon no 566 541 558 36.881377 299.498315 168.189846 2.225799773 0.086759 52 11 21883 copy of SH18403 no 422 34.925293 309.581709 172.253501 2.236168058 -0.017639 52 12 13199 MT_COX1 exon4 yes 13084 7186 7205 31.022414 290.551653 160.7870335 2.206251023 0.032386 52 13 11539 "rRNA(18S,5.8S,25S)" 25S yes 7956 4581 4594 21160.22177 19334.33544 20247.27861 4.306366659 -0.581054 52 14 10392 RUF7 3_flank no 700 65.5694 306.908274 186.238837 2.270070251 0.150088 52 15 21274 YPL090C spliced yes 40 17 35 37.832261 325.34838 181.5903205 2.259092695 -0.138161 52 16 14298 MT_VAR1 VAR1 yes 1467 676 704 32.255482 311.891064 172.073273 2.235713419 -0.068934 52 17 18447 YMR142C intron/exon no 502 441 460 30.721265 271.885351 151.303308 2.179848423 0.122387 52 18 6554 snR46 3_flank no 397 29.096815 315.11 172.1034075 2.235789469 -0.183922 52 19 20536 YGR183C spliced yes 40 1 18 33.74285 302.113448 167.928149 2.225123501 0.028448 52 20 31 Ala1 AlaAGC tRNA yes 273 51 63 29.66295 289.141911 159.4024305 2.202494939 -0.014026 52 21 944 Gly1 GlyCCC_i 5_flank no 272 41.599552 286.874416 164.236984 2.215470961 0.222147 52 22 1738 Leu7 LeuTAA 5_flank/tRNA no 284 31.719348 316.813487 174.2664175 2.241213703 -0.114573 52 23 1928 Lys1 LysCTT_i 3_flank no 272 31.460539 304.400645 167.930592 2.225129819 -0.0387 52 24 10336 RUF7 RUF7 yes 700 291 310 31.13978 311.686458 171.413119 2.234044057 -0.092951 52 25 1168 His1 HisGTG tRNA/3_flank no 272 46.561115 332.943772 189.7524435 2.278187377 -0.165349 52 26 11960 "rRNA(18S,5.8S,25S)" 25S yes 7956 6686 6699 266.539893 520.965114 393.7525035 2.595223328 0.055898 52 27 19035 YOR234C intron no 627 81 95 49.025158 326.620863 187.8230105 2.273748797 -0.102069 52 28 16114 YDR064W intron no 639 201 218 32.372536 312.485852 172.429194 2.236610798 -0.072142 52 29 10658 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 176 191 46.841354 313.368954 180.105154 2.255526141 -0.003924 52 30 14504 MT_21S 21S_rRNA3 yes 4639 1771 1788 30.359215 295.347795 162.853505 2.21179711 -0.020323 52 31 18540 YMR230W intron no 510 181 198 33.487542 309.268048 171.377795 2.233954551 -0.03254 52 32 10137 RUF6 RUF6 yes 1251 531 545 51.097323 316.398466 183.7478945 2.264222371 -0.007963 52 33 10862 "rRNA(18S,5.8S,25S)" 18S yes 7956 1196 1213 327.232688 583.984689 455.6086885 2.658591998 0.062398 52 34 4762 snR5 5_flank no 404 28.146598 306.855227 167.5009125 2.224017177 -0.174732 52 35 5646 snR34 snR34 yes 750 151 170 32.10028 280.141217 156.1207485 2.193460625 0.135231 52 36 14782 MT_ORF11; Leu; Gln tRNA/3_flank no 716 616 644 27.908192 312.457546 170.182869 2.230915841 -0.212041 52 37 15626 YBR181C intron no 452 301 318 31.879809 257.746558 144.8131835 2.160808101 0.251018 52 38 1712 Leu6 LeuGAG 3_flank no 282 29.81297 340.098801 184.9558855 2.267068156 -0.315512 52 39 15896 YDL083C 5_exon no 532 1 19 46.052167 363.827934 204.9400505 2.311626839 -0.400609 52 40 20406 YFR031C-A spliced yes 40 17 33 40.99614 302.39843 171.697285 2.234763428 0.073562 52 41 14051 MT_COB bi4 no 7308 4951 4973 29.870859 324.958455 177.414657 2.248989496 -0.213169 52 42 2817 Pro6 ProTGG_v 3_flank no 302 29.908237 341.850921 185.879579 2.26923168 -0.32689 52 43 21656 copy of SH8991 no 690 42.160625 296.695808 169.4282165 2.228985739 0.129314 52 44 3134 Ser4 SerGCT tRNA yes 301 57 71 33.015335 279.790148 156.4027415 2.194244361 0.16689 52 45 13877 MT_COB intronic no 7308 2341 2362 29.976903 296.174939 163.075921 2.21238984 -0.038706 52 46 10220 RUF6 RUF6 yes 1251 946 962 36.084559 276.620095 156.352327 2.194104349 0.274096 52 47 12122 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7496 7516 29.973126 291.49335 160.733238 2.206105694 -0.009502 52 48 13135 MT_COX1 ai3 no 13084 6226 6243 29.979469 302.930276 166.4548725 2.221296512 -0.080139 52 49 20313 YER007C-A spliced yes 40 17 34 42.257612 315.745248 179.00143 2.2528565 -0.041696 52 50 3937 RNase MRP RNaseMRP yes 540 101 115 35.191155 303.075889 169.133522 2.228229693 0.037989 52 51 4235 telomerase RNA telomerase yes 1501 211 230 30.190063 287.928524 159.0592935 2.201559049 0.018942 52 52 7482 snR71 snR71 yes 290 26 43 30.304318 291.350694 160.827506 2.206360327 0.002875 52 53 10425 RUF8 RUF8 yes 1151 51 71 30.398024 296.876107 163.6370655 2.213881683 -0.028492 52 54 3034 Ser2 SerAGA_ii 3_flank no 282 36.651227 285.811307 161.231267 2.207449267 0.199768 52 55 17368 YIL052C intron no 572 261 278 48.069167 344.644309 196.356738 2.293045809 -0.247667 52 56 2446 Phe5 PheGAA_v tRNA yes 291 1 13 34.532914 262.906709 148.7198115 2.172368826 0.328414 52 57 8858 LSR1 / U2 RNA U2 yes 1375 931 946 490.976055 636.399116 563.6875855 2.75103847 0.372565 52 58 1516 Leu3 LeuCAA_iii tRNA-intron no 314 i13 i27 30.315025 292.967321 161.641173 2.208551993 -0.006944 52 59 8077 snoRNA cluster 2 snR61/3_flank no 739 621 640 30.307525 308.762568 169.5350465 2.22925949 -0.103885 52 60 5600 snR34 5_flank no 750 55.160971 287.167546 171.1642585 2.233413083 0.266724 52 61 6108 snR37 3_flank no 586 34.487935 282.309625 158.39878 2.199751832 0.195952 52 62 6008 snR37 5_flank no 586 30.386543 314.313546 172.3500445 2.2364114 -0.133973 52 63 17673 YKL006C 3_exon no 241 201 217 40.711614 285.440188 163.075901 2.212389787 0.234181 52 64 2321 Phe3 PheGAA_iii 5_flank no 291 36.499937 328.19181 182.3458735 2.26089594 -0.165748 52 65 5792 snR35 snR35 yes 740 146 163 32.26239 287.867519 160.0649545 2.204296256 0.0904 52 66 1956 Lys2 LysCTT_ii 5_flank/tRNA no 273 28.0361 290.535086 159.285593 2.202176497 -0.108069 52 67 7491 snR71 snR71 yes 290 71 90 31.973637 303.119594 167.5466155 2.224135659 -0.014043 52 68 10301 RUF7 RUF7 yes 700 116 132 42.001319 285.71551 163.8584145 2.214468748 0.234335 52 69 8810 LSR1 / U2 RNA U2 yes 1375 691 703 73.504279 338.982476 206.2433775 2.314380012 -0.045507 52 70 13661 MT_ATP6 ATP6 yes 980 721 745 29.604046 308.940788 169.272417 2.228586195 -0.129471 52 71 7767 snoRNA cluster1 snR76 yes 1574 631 643 39.563631 302.456202 171.0099165 2.233021295 0.069781 52 72 7711 snoRNA cluster1 snR77 yes 1574 351 368 35.46404 302.688152 169.076096 2.228082211 0.044351 52 73 9048 snR17a / U3a 3_flank no 690 29.45519 297.054424 163.254807 2.212865978 -0.062498 52 74 7957 snoRNA cluster 2 5_flank no 739 21 40 27.54724 302.679776 165.113508 2.217782605 -0.189932 52 75 81 Ala2 AlaTGC tRNA yes 273 41 56 315.402273 459.845935 387.624104 2.588410775 0.459687 52 76 9024 snR17a / U3a U3a yes 690 406 420 36.186156 304.514627 170.3503915 2.231343136 0.03783 52 77 9727 RUF4 RUF4 yes 988 411 427 30.400426 294.324117 162.3622715 2.210485119 -0.012514 52 78 10976 "rRNA(18S,5.8S,25S)" 18S yes 7956 1766 1781 4434.940412 3492.734573 3963.837493 3.598115841 0.360859 52 79 21674 copy of SH9837 no 975 29.868629 301.34984 165.6092345 2.21908455 -0.074376 52 80 14168 MT_COB intronic no 7308 6706 6734 28.871013 330.31934 179.5951765 2.254294668 -0.278846 52 81 10539 RUF8 RUF8 yes 1151 621 637 30.854099 276.61421 153.7341545 2.186770364 0.10613 52 82 7812 snoRNA cluster1 intergenic no 1574 856 877 30.585148 338.674841 184.6299945 2.266302257 -0.294555 52 83 4802 snR5 snR5 yes 404 181 197 59.05148 320.944687 189.9980835 2.27874922 -0.000354 52 84 10776 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 766 783 29.732206 285.839466 157.785836 2.198068015 0.004894 52 85 9997 RUF5-1 3_flank no 975 43.163753 292.713884 167.9388185 2.225151093 0.169214 52 86 8753 LSR1 / U2 RNA U2 yes 1375 406 418 46.365753 291.608138 168.9869455 2.227853156 0.189652 52 87 11627 "rRNA(18S,5.8S,25S)" 25S yes 7956 5021 5038 6868.723949 8344.498253 7606.611101 3.881191213 -0.556296 52 88 3934 RNase MRP RNaseMRP yes 540 86 101 74.787791 325.707553 200.247672 2.301567476 0.058746 52 89 70 Ala2 AlaTGC 5_flank/tRNA no 273 44.657936 332.939357 188.7986465 2.275998877 -0.175564 52 90 8535 snR19 / U1 RNA U1 yes 868 171 188 29.432086 292.291569 160.8618275 2.206452998 -0.040593 52 91 16310 YDR450W intron/exon no 535 481 497 42.581404 280.378009 161.4797065 2.208117951 0.288278 52 92 13369 MT_COX1 intronic no 13084 9736 9753 29.551573 293.95536 161.7534665 2.208853597 -0.041857 52 93 9291 RUF1 RUF1 yes 750 31 47 37.312143 279.704312 158.5082275 2.20005181 0.260546 52 94 12829 MT_COX1 ai1 no 13084 1636 1657 31.839048 319.544926 175.691987 2.244751955 -0.134229 52 95 2782 Pro6 ProTGG_v tRNA yes 302 1 13 255.563837 427.752615 341.658226 2.533591882 0.393668 52 96 13257 MT_COX1 ai4 no 13084 8056 8078 28.245393 320.386009 174.315701 2.241336507 -0.245506 52 97 382 Asn1 AsnGTT 5_flank/tRNA no 274 35.880177 344.662154 190.2711655 2.279372978 -0.304128 52 98 3084 Ser3 SerCGA 3_flank no 301 29.971077 273.012246 151.4916615 2.180388729 0.078467 52 99 314 Arg5 ArgTCT 5_flank no 272 32.596348 336.924637 184.7604925 2.266609111 -0.255381 52 100 14763 MT_ORF11; Leu; Gln ORF11 yes 716 331 359 31.388711 300.000221 165.694466 2.219308004 -0.014277 52 101 13637 MT_ATP6 ATP6 yes 980 361 378 51.876765 343.242315 197.55954 2.295698006 -0.214494 52 102 7370 snR68 snR68 yes 336 71 95 29.090533 284.806159 156.948346 2.195756743 -0.024184 52 103 19877 Negative Control no 60 NA #VALUE! 32.674348 301.502916 167.088632 2.222946903 0.018441 52 104 17470 YIL148W 3_exon no 534 501 517 72.581772 317.559187 195.0704795 2.290191552 0.106442 53 2 12439 5S rRNA NTS2 no 1420 1151 1168 53.172612 342.581067 197.8768395 2.296394965 -0.202181 53 3 11467 "rRNA(18S,5.8S,25S)" 25S yes 7956 4221 4238 264.520695 691.393828 477.9572615 2.679389064 -0.472871 53 4 14696 MT_Thr2 5_flank no 276 16 42 29.97765 344.083317 187.0304835 2.271912397 -0.342016 53 5 6887 snR56 snR56 yes 288 66 85 35.898122 306.993411 171.4457665 2.234126766 0.014485 53 6 18033 YLR316C intron/exon no 168 101 120 32.242284 276.920526 154.581405 2.18915725 0.16113 53 7 20973 YML034W spliced yes 40 13 28 35.379098 285.691786 160.535442 2.205570928 0.186175 53 8 1478 Leu2 LeuCAA_ii 3_flank no 314 34.612227 298.350236 166.4812315 2.22136528 0.069958 53 9 19356 YPL249C intron no 337 261 282 30.831386 300.189081 165.5102335 2.218824851 -0.034143 53 10 12219 5S rRNA NTS2 no 1420 51 63 44.710362 305.132437 174.9213995 2.242842943 0.060121 53 11 12195 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7861 7879 28.95204 280.525278 154.738659 2.189598829 -0.011431 53 12 17866 YLL050C intron no 279 121 137 54.692939 317.487378 186.0901585 2.269723406 0.003104 53 13 3542 Tyr2 TyrGTA_ii 5_flank no 289 46.878992 322.517961 184.6984765 2.266463313 -0.079693 53 14 12507 MT_ORF6 + ORF7 (hypothetical) 5_flank no 664 1 27 29.246969 269.070707 149.158838 2.173648991 0.059831 53 15 17509 YJL136C intron no 560 141 163 29.573339 338.453249 184.013294 2.2648492 -0.306867 53 16 20298 YEL012W spliced yes 40 9 25 30.020656 283.632192 156.826424 2.19541924 0.030218 53 17 9372 RUF1 RUF1 yes 750 436 452 36.760949 291.042222 163.9015855 2.214583155 0.156185 53 18 7460 snR71 5_flank no 290 34.19972 295.556694 164.878207 2.217163256 0.088242 53 19 64 Ala2 AlaTGC 5_flank no 273 31.440891 271.760523 151.600707 2.180701227 0.158975 53 20 19548 CBP1 2.2 CBP1 2.2 yes 401 61 78 38.132152 308.938908 173.53553 2.239388407 0.007162 53 21 783 Glu1 GluCTC 5_flank no 272 31.714393 301.374803 166.544598 2.221530551 -0.011915 53 22 19961 YBL059W spliced yes 40 1 20 42.307426 323.091867 182.6996465 2.261737707 -0.104619 53 23 8239 snoRNA cluster 3; 3_flank no 743 706 722 35.544513 278.115413 156.829963 2.19542904 0.254529 53 24 7092 snR63 5_flank no 455 28.849402 293.510444 161.179923 2.207310944 -0.077204 53 25 15906 YDL083C intron no 532 201 218 32.675476 292.63104 162.653258 2.211262767 0.073467 53 26 6926 snR58 5_flank/snR58 no 296 30.307701 291.28878 160.7982405 2.206281292 0.003382 53 27 16700 YGL031C intron no 556 141 157 63.038547 301.013808 182.0261775 2.260133849 0.185073 53 28 20895 YLR287C-A spliced yes 40 17 34 32.073661 289.225909 160.649785 2.205880149 0.075605 53 29 3659 Val2 ValAAC_ii tRNA yes 274 35 49 76.34884 312.754643 194.5517415 2.289035123 0.166144 53 30 20145 YDL115C spliced yes 40 1 15 58.933382 305.889239 182.4113105 2.261051763 0.121599 53 31 20072 YCR028C-A spliced yes 40 13 28 32.265048 289.636645 160.9508465 2.206693265 0.079205 53 32 5449 snR32 5_flank no 388 34.374472 314.602584 174.488528 2.241766879 -0.063981 53 33 16702 YGL031C intron no 556 181 195 50.877094 299.303295 175.0901945 2.243261825 0.137603 53 34 9456 RUF2 RUF2 yes 468 121 138 30.176655 290.484646 160.3306505 2.205016555 0.003947 53 35 5179 snR13 snR13 yes 324 51 67 36.195998 288.651892 162.423945 2.210650055 0.170153 53 36 9944 RUF5-1 RUF5-1 yes 975 526 538 42.182113 266.60572 154.3939165 2.188630184 0.42815 53 37 20088 YDL012C spliced yes 40 5 20 92.844882 332.851345 212.8481135 2.328069805 0.121072 53 38 20073 YCR028C-A spliced yes 40 17 33 29.810184 329.889704 179.849944 2.254910307 -0.243022 53 39 20500 YGR001C spliced yes 40 13 31 32.826011 310.387417 171.606714 2.234534275 -0.049731 53 40 10996 "rRNA(18S,5.8S,25S)" 18S yes 7956 1866 1882 52550.20874 17437.4467 34993.82772 4.543991449 0.704715 53 41 20629 YHR123W spliced yes 40 9 30 29.822192 302.958085 166.3901385 2.221127583 -0.085801 53 42 9177 snR7 U5 RNA U5 yes 415 156 172 33.905279 276.372511 155.138895 2.190720694 0.217294 53 43 274 Arg4 ArgCCT 5_flank no 272 29.88918 263.319791 146.6044855 2.166147258 0.12235 53 44 14683 MT_21S 21S_rRNA4 yes 4639 4456 4484 27.900855 315.194249 171.547552 2.234384525 -0.228241 53 45 5785 snR35 snR35 yes 740 111 131 34.031997 330.207279 182.119638 2.260356778 -0.189247 53 46 21936 copy of SH19619 no 401 29.988205 306.128459 168.058332 2.225460049 -0.099171 53 47 18416 YMR133W exon/intron no 225 41 58 32.031931 308.744741 170.388336 2.231439862 -0.046756 53 48 11811 "rRNA(18S,5.8S,25S)" 25S yes 7956 5941 5963 30.000792 287.616339 158.8085655 2.200873923 0.010615 53 49 10371 RUF7 RUF7 yes 700 466 480 68.980511 360.195227 214.587869 2.331605167 -0.222016 53 50 9511 RUF3 5_flank no 631 30.060964 290.394506 160.227735 2.204737693 0.000508 53 51 1362 Ile3 IleTAT_ii 3_flank no 333 30.136386 283.951786 157.044086 2.196021586 0.034697 53 52 4699 snR4 snR4 yes 386 31 48 32.276819 299.986295 166.131557 2.220452135 0.014943 53 53 15967 YDL130W intron no 401 321 338 32.356932 334.20322 183.280076 2.263115256 -0.238391 53 54 17886 YLR048W intron no 459 241 258 34.451421 313.740971 174.096196 2.240789282 -0.056277 53 55 19434 YPR132W intron/exon no 465 401 418 40.614853 313.714871 177.164862 2.24837759 -0.029647 53 56 18702 YNL130C intron no 541 121 138 30.244374 280.762394 155.503384 2.191739844 0.055296 53 57 16383 YER007C intron no 203 101 118 32.210581 267.687983 149.949282 2.175944391 0.216661 53 58 6832 snR52 snR52 yes 292 66 83 34.188661 330.836206 182.5124335 2.261292456 -0.194144 53 59 18494 YMR194W intron no 563 241 257 40.308049 297.563098 168.9355735 2.22772111 0.117055 53 60 15729 YBR230C exon/intron no 197 41 57 32.152995 309.821482 170.9872385 2.232963698 -0.053798 53 61 10546 RUF8 RUF8 yes 1151 656 678 30.175656 336.765664 183.47066 2.263566623 -0.286165 53 62 2007 Lys3 LysTTT_i 5_flank no 296 34.36203 287.992952 161.177491 2.207304391 0.154271 53 63 2000 Lys3 LysTTT_i 5_flank no 296 30.309094 319.713776 175.011435 2.243066426 -0.168003 53 64 21223 YOR182C spliced yes 40 13 30 36.503678 319.621479 178.0625785 2.250572658 -0.091805 53 65 3440 Trp1 TrpCCA tRNA yes 306 32 i12 28.221915 279.381992 153.8019535 2.186961852 -0.045679 53 66 10269 RUF7 5_flank no 700 98.892165 317.583477 208.237821 2.318559611 0.266165 53 67 700 Gln3 GlnTTG_ii tRNA yes 272 31 47 178.947729 369.726922 274.3373255 2.4382849 0.365353 53 68 11123 "rRNA(18S,5.8S,25S)" 18S yes 7956 2501 2516 144.181693 359.309558 251.7456255 2.400961933 0.251021 53 69 14940 MT_Asn 3_flank no 271 226 248 27.797835 334.565754 181.1817945 2.258114557 -0.341919 53 70 21595 copy of SH6471 no 372 33.738225 265.038753 149.388489 2.174317135 0.289232 53 71 10350 RUF7 RUF7 yes 700 361 382 29.587242 298.23465 163.910946 2.214607957 -0.065128 53 72 18860 YNR053C intron no 631 181 199 31.512185 311.059441 171.285813 2.233721393 -0.076829 53 73 8070 snoRNA cluster 2 snR61 yes 739 586 605 54.677546 333.012459 193.8450025 2.287454609 -0.120566 53 74 13232 MT_COX1 ai4 no 13084 7681 7700 29.592262 296.618944 163.105603 2.21246888 -0.054949 53 75 13105 MT_COX1 ai3 no 13084 5776 5792 46.05683 307.745927 176.9013785 2.247731217 0.040953 53 76 15866 YDL079C intron no 392 241 259 30.137085 315.826048 172.9815665 2.237999826 -0.15142 53 77 10188 RUF6 RUF6 yes 1251 786 805 30.523253 308.30358 169.4134165 2.228947801 -0.09374 53 78 15754 YCR031C intron no 407 161 179 30.895926 284.344564 157.620245 2.197611998 0.067879 53 79 15002 MT_COX 2; ORF1 COX2 no 2427 631 645 35.411434 286.157727 160.7845805 2.206244397 0.182526 53 80 11922 "rRNA(18S,5.8S,25S)" 25S yes 7956 6496 6511 61.223431 306.071009 183.64722 2.263984359 0.132519 53 81 7556 snR79 3_flank no 284 29.15055 289.516299 159.3334245 2.20230689 -0.042824 53 82 17902 YLR061W intron no 489 101 120 28.95039 287.962287 158.4563385 2.199909616 -0.046363 53 83 6417 snR45 5_flank no 372 36.949064 285.982167 161.4656155 2.208080052 0.201642 53 84 7663 snoRNA cluster1 snR78 yes 1574 111 132 28.173719 323.150263 175.661991 2.244677801 -0.263976 53 85 18796 YNL301C intron no 532 261 278 31.698397 277.567221 154.632809 2.189301645 0.139071 53 86 14220 MT_ATP9 ATP9 yes 431 196 216 29.125002 327.723127 178.4240645 2.251453428 -0.255172 53 87 7918 snoRNA cluster1 snR72 yes 1574 1386 1402 34.429319 283.162843 158.796081 2.20083978 0.18862 53 88 659 Gln2 GlnTTG_i 3_flank no 272 30.066952 294.359416 162.213184 2.210086149 -0.024253 53 89 5383 snR31 5_flank no 425 30.670274 308.561399 169.6158365 2.229466399 -0.090261 53 90 18646 YNL112W intron no 1102 101 117 32.35543 285.540186 158.947808 2.201254543 0.108353 53 91 6858 snR56 5_flank no 288 36.073829 312.501313 174.287571 2.241266417 -0.029939 53 92 6092 snR37 snR37/3_flank no 586 29.58741 299.583082 164.585246 2.216390901 -0.073428 53 93 15639 YBR186W intron no 213 121 138 37.340914 286.906674 162.123794 2.209846758 0.198034 53 94 15660 YBR189W intron no 513 341 360 33.775313 328.336116 181.0557145 2.257812237 -0.176856 53 95 19208 YPL081W intron no 601 321 338 32.0576 294.934513 163.4960565 2.213507282 0.039096 53 96 5915 snR36 snR36 yes 555 31 47 30.246624 300.589557 165.4180905 2.218583003 -0.056593 53 97 15854 YDL079C 5_exon no 392 1 23 28.328786 343.259494 185.79414 2.269032012 -0.369394 53 98 17895 YLR048W 3_exon no 459 421 438 41.710439 277.262685 159.486562 2.202724096 0.31761 53 99 16523 YER131W intron no 461 81 95 103.386229 416.72518 260.0557045 2.415066385 -0.313172 53 100 19572 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 141 160 29.769951 284.67991 157.2249305 2.196521411 0.012278 53 101 3030 Ser2 SerAGA_ii 3_flank no 282 42.832642 295.818592 169.325617 2.228722667 0.139042 53 102 9712 RUF4 RUF4 yes 988 336 355 31.260439 286.665906 158.9631725 2.201296522 0.065157 53 103 15023 MT_COX 2; ORF1 ORF1exon1 yes 2427 946 968 29.231085 302.145284 165.6881845 2.219291539 -0.10176 53 104 11439 "rRNA(18S,5.8S,25S)" 25S yes 7956 4081 4097 82.421009 337.805529 210.113269 2.32245348 0.020827 54 2 3052 Ser3 SerCGA 5_flank no 301 35.080802 298.916839 166.9988205 2.222713404 0.070837 54 3 17990 YLR275W 3_exon no 190 161 178 33.227915 289.796654 161.5122845 2.20820556 0.108894 54 4 21699 copy of SH10874 no 7956 2570.266277 4490.213383 3530.23983 3.547804211 -0.72555 54 5 21025 YMR079W spliced yes 40 21 40 37.388491 344.698995 191.043743 2.281132818 -0.299788 54 6 20443 YGL087C spliced yes 40 21 39 28.116295 257.627623 142.871959 2.154947 0.043183 54 7 7014 snR60 3_flank no 304 1082.896407 1383.739991 1233.318199 3.09107514 0.047959 54 8 12508 MT_ORF6 + ORF7 (hypothetical) 5_flank no 664 16 44 30.56856 327.40523 178.986895 2.252821234 -0.211145 54 9 12485 5S rRNA NTS1 no 1420 1381 1407 32.71672 292.730467 162.7235935 2.211450526 0.074159 54 10 985 Gly2 GlyCCC_ii 5_flank no 272 33.804343 304.163835 168.984089 2.227845815 0.012486 54 11 11536 "rRNA(18S,5.8S,25S)" 25S yes 7956 4566 4582 14936.72675 17585.44425 16261.0855 4.211149533 -0.849544 54 12 13904 MT_COB exon3 yes 7308 2746 2765 28.918449 298.836609 163.877529 2.214519407 -0.097437 54 13 13642 MT_ATP6 ATP6 yes 980 436 453 30.929832 292.24054 161.585186 2.208401542 0.018594 54 14 8591 snR19 / U1 RNA U1 yes 868 451 468 33.066094 253.427698 143.246896 2.15608522 0.330288 54 15 15988 YDL136W intron no 505 341 355 57.496107 320.385834 188.9409705 2.276326142 -0.005473 54 16 20314 YER007C-A spliced yes 40 21 38 35.886816 315.503884 175.69535 2.244760267 -0.057132 54 17 2724 Pro5 ProTGG_iv tRNA yes 303 1 13 261.342776 537.904702 399.623739 2.601651279 -0.024071 54 18 15770 YCR097W intron no 154 81 102 30.807324 287.168819 158.9880715 2.201364541 0.046683 54 19 13763 MT_COB intronic no 7308 631 652 29.102553 303.359723 166.231138 2.220712378 -0.113747 54 20 5970 snR36 snR36 yes 555 306 325 31.46831 328.660616 180.064463 2.25542801 -0.208591 54 21 1585 Leu4 LeuCAA_iv tRNA yes 314 55 71 37.943252 288.48359 163.213421 2.212755868 0.191114 54 22 20375 YER179W spliced yes 40 13 29 31.377447 297.215094 164.2962705 2.215627705 0.002521 54 23 4587 U3b (snR17b) 3_flank no 662 28.98556 311.022714 170.004137 2.23045949 -0.163884 54 24 4124 SRP SRP yes 875 511 523 39.08944 283.71229 161.400865 2.207905858 0.244652 54 25 19218 YPL081W intron no 601 521 540 28.306276 322.966973 175.6366245 2.244615082 -0.25803 54 26 19593 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 161 177 36.180588 307.196261 171.6884245 2.234741015 0.016098 54 27 8994 snR17a / U3a U3a yes 690 256 270 44.07066 303.63939 173.855025 2.240187248 0.071524 54 28 14662 MT_21S 21S_rRNA4 yes 4639 4141 4163 29.762091 322.099861 175.930976 2.245342312 -0.20071 54 29 7414 snR69 5_flank no 301 33.840646 283.856647 158.8486465 2.200983519 0.166106 54 30 4924 snR9 snR9 yes 387 26 44 31.933712 304.627604 168.280658 2.226034201 -0.024484 54 31 15777 YDL012C intron no 186 81 98 32.078739 309.209267 170.644003 2.23209103 -0.049867 54 32 17339 YIL018W intron no 500 181 200 28.102415 315.477071 171.789743 2.23499723 -0.222376 54 33 7015 snR60 3_flank no 304 265.378633 494.576301 379.977467 2.579757843 0.1493 54 34 4426 telomerase RNA telomerase yes 1501 1166 1188 30.155214 302.430269 166.2927415 2.220873293 -0.070994 54 35 3956 RNase MRP RNaseMRP yes 540 196 211 36.197219 297.457304 166.8272615 2.222267021 0.095905 54 36 2005 Lys3 LysTTT_i 5_flank no 296 31.99438 288.720567 160.3574735 2.205089205 0.076241 54 37 1808 Leu8 LeuTAG_i tRNA yes 301 e12 52 48.175576 265.014441 156.5950085 2.194777915 0.457406 54 38 7954 snoRNA cluster 2 5_flank no 739 6 22 29.799606 288.316175 159.0578905 2.201555218 -0.003076 54 39 17030 YGR183C exon/intron no 313 41 58 29.764179 322.700314 176.2322465 2.246085377 -0.204066 54 40 6391 snR43 snR43/3_flank no 409 33.790788 287.085977 160.4383825 2.205308275 0.143738 54 41 18784 YNL301C 5_exon no 532 21 39 33.794535 321.446064 177.6202995 2.249492598 -0.124208 54 42 15824 YDL064W intron no 210 121 140 31.793048 359.395526 195.594287 2.291356166 -0.432128 54 43 19956 YBL059C-A spliced yes 40 5 21 31.83014 255.15066 143.4904 2.156822846 0.262075 54 44 9131 snR7 U5 RNA 5_flank no 415 31.883677 325.230737 178.557207 2.251777384 -0.177236 54 45 11390 "rRNA(18S,5.8S,25S)" 25S yes 7956 3836 3856 7377.35081 22072.66493 14725.00787 4.168055536 -2.089532 54 46 1676 Leu6 LeuGAG 5_flank no 282 31.990854 277.780202 154.885528 2.190010841 0.147249 54 47 18003 YLR287C intron no 530 241 260 32.015155 310.662528 171.3388415 2.233855826 -0.062276 54 48 12592 MT_15S 15S yes 1848 631 655 32.018613 307.485 169.7518065 2.229814405 -0.038901 54 49 11407 "rRNA(18S,5.8S,25S)" 25S yes 7956 3921 3936 36.093772 277.662832 156.878302 2.19556288 0.264903 54 50 3526 Tyr2 TyrGTA_ii 5_flank no 289 32.041573 324.923622 178.4825975 2.251595878 -0.172855 54 51 3359 Thr3 ThrTGT_i 3_flank no 272 38.224009 265.009307 151.616658 2.18074692 0.403916 54 52 17501 YJL041W 3_exon no 218 201 215 32.167971 288.6017 160.3848355 2.205163303 0.082649 54 53 12490 MT_tRNA Pro 5_flank no 272 1 20 32.230522 355.205137 193.7178295 2.287169594 -0.398111 54 54 1156 His1 HisGTG tRNA yes 272 0 16 137.272432 354.41159 245.842011 2.3906561 0.242792 54 55 13417 MT_COX1 intronic no 13084 10456 10480 28.114624 325.618502 176.866563 2.247645736 -0.280178 54 56 15727 YBR230C 5_exon no 197 1 20 32.107551 302.81381 167.4606805 2.223912852 -0.00782 54 57 16720 YGL031C 3_exon no 556 541 556 42.182512 291.637617 166.9100645 2.222482525 0.177406 54 58 16827 YGL178W intron no 740 321 345 56.351008 352.196567 204.2737875 2.310212641 -0.252009 54 59 10797 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 871 890 29.831857 292.78174 161.3067985 2.207652672 -0.022555 54 60 12841 MT_COX1 ai1 no 13084 1816 1838 29.864445 337.864787 183.864616 2.264498159 -0.29851 54 61 5192 snR13 snR13/3_flank no 324 31.989559 275.371467 153.680513 2.186618802 0.163241 54 62 7604 snR189 snR189 yes 389 91 108 34.16572 302.435178 168.300449 2.226085275 0.030974 54 63 9251 snR6 / U6 RNA 3_flank no 312 34.298763 310.640319 172.469541 2.236712408 -0.033571 54 64 13795 MT_COB intronic no 7308 1111 1139 28.217402 337.15158 182.684491 2.261701679 -0.340452 54 65 4246 telomerase RNA telomerase yes 1501 266 280 30.280603 262.689176 146.4848895 2.165792828 0.145758 54 66 13891 MT_COB intronic no 7308 2551 2572 30.228383 337.655891 183.942137 2.264681228 -0.291967 54 67 19601 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 321 338 32.175914 291.901276 162.038595 2.209618469 0.061977 54 68 7253 snR65 snR65 yes 300 41 59 34.080374 307.894333 170.9873535 2.23296399 -0.014273 54 69 5444 snR31 3_flank no 425 31.887147 323.011649 177.449398 2.24907453 -0.160271 54 70 6132 snR39B snR39B yes 296 1 18 35.77503 303.113761 169.4443955 2.229027209 0.044493 54 71 10975 "rRNA(18S,5.8S,25S)" 18S yes 7956 1761 1774 39351.06805 14636.75912 26993.91359 4.431265853 0.640899 54 72 1433 Leu2 LeuCAA_ii 5_flank no 314 35.495271 302.842095 169.168683 2.228319968 0.043459 54 73 5601 snR34 5_flank no 750 29.463469 274.610748 152.0371085 2.181949601 0.044152 54 74 7532 snR79 snR79 yes 284 1 20 64.94323 331.051393 197.9973115 2.296659293 -0.042791 54 75 7075 snR62 3_flank no 300 29.79291 308.861918 169.327414 2.228727276 -0.122361 54 76 20114 YDL075W spliced yes 40 5 23 30.146321 315.059746 172.6030335 2.237048424 -0.146627 54 77 21005 YML094W spliced yes 40 9 26 30.575602 310.800342 170.687972 2.232202918 -0.106801 54 78 7993 snoRNA cluster 2 intergenic no 739 201 218 37.327636 303.187268 170.257452 2.23110613 0.057724 54 79 16174 YDR305C exon/intron no 189 41 58 31.362937 286.9358 159.1493685 2.20180492 0.066843 54 80 12800 MT_COX1 ai1 no 13084 1201 1222 27.295155 326.63197 176.9635625 2.247883853 -0.316788 54 81 6719 snR49 snR49 yes 365 121 138 33.741805 289.809778 161.7757915 2.208913533 0.124837 54 82 12315 5S rRNA NTS2 no 1420 531 543 44.262665 303.792027 174.027346 2.240617497 0.070764 54 83 13802 MT_COB intronic no 7308 1216 1235 31.094311 297.818727 164.456519 2.216051093 -0.01068 54 84 7259 snR65 snR65 yes 300 71 88 34.774014 311.631057 173.2025355 2.238554245 -0.035742 54 85 16021 YDL189W intron no 199 81 102 32.07967 309.486162 170.782916 2.232444425 -0.052067 54 86 11141 "rRNA(18S,5.8S,25S)" 18S yes 7956 2591 2607 14241.87356 7677.992698 10959.93313 4.039807904 0.471363 54 87 12907 MT_COX1 ai2 no 13084 2806 2827 32.739282 308.208304 170.473793 2.231657624 -0.033415 54 88 8513 snR19 / U1 RNA U1 yes 868 61 82 32.151876 321.245662 176.698769 2.247233524 -0.143299 54 89 3324 Thr3 ThrTGT_i 5_flank no 272 29.816182 303.517352 166.666767 2.221849011 -0.089407 54 90 3072 Ser3 SerCGA tRNA yes 301 i19 52 46.560882 289.475458 168.01817 2.22535625 0.210384 54 91 21194 YOL121C spliced yes 40 1 15 67.280457 319.413176 193.3468165 2.286337026 0.06029 54 92 14198 MT_COB exon6 yes 7308 7156 7176 28.614495 286.037872 157.3261835 2.196801007 -0.055567 54 93 1085 Gly4 GlyTCC 5_flank no 272 36.332411 308.951583 172.641997 2.237146451 0.002633 54 94 9950 RUF5-1 RUF5-1 yes 975 556 573 29.915697 285.844791 157.880244 2.198327789 0.014429 54 95 3567 Tyr2 TyrGTA_ii 3_flank no 289 39.707669 296.120813 167.914241 2.225087531 0.129261 54 96 18505 YMR194W intron no 563 461 478 30.254622 273.036656 151.645639 2.180829925 0.092978 54 97 6179 snR40 5_flank no 297 55.520622 354.630593 205.0756075 2.311914007 -0.274721 54 98 8607 snR19 / U1 RNA U1 yes 868 531 548 33.155385 293.029097 163.092241 2.2124333 0.08619 54 99 10561 RUF8 RUF8 yes 1151 731 748 32.054189 306.97891 169.5165495 2.229212104 -0.034709 54 100 21295 YPL198W spliced yes 40 1 17 66.557564 328.0857 197.321632 2.295174699 -0.010305 54 101 3737 Val4 ValTAC 5_flank no 274 31.65652 299.70362 165.68007 2.219270269 -0.003584 54 102 7811 snoRNA cluster1 intergenic no 1574 851 872 35.2632 376.961059 206.1121295 2.31410355 -0.553537 54 103 5323 snR30 snR30 yes 801 466 480 84.077721 375.342792 229.7102565 2.361180387 -0.213118 54 104 2095 Lys4 LysTTT_ii 3_flank no 296 40.713428 279.628877 160.1711525 2.204584301 0.291657 55 2 7620 snR189 snR189 yes 389 171 183 84.125779 351.075459 217.600619 2.337660126 -0.058473 55 3 14487 MT_21S 21S_rRNA3 yes 4639 1516 1542 29.157066 339.769636 184.463351 2.265910094 -0.32233 55 4 7400 snR69 5_flank no 301 33.060635 289.195534 161.1280845 2.207171244 0.107447 55 5 2217 Phe1 PheGAA_i 5_flank no 292 65.682365 311.815153 188.748759 2.275884105 0.110596 55 6 11636 "rRNA(18S,5.8S,25S)" 25S yes 7956 5066 5083 58.574792 292.552974 175.563883 2.244435178 0.235183 55 7 4340 telomerase RNA telomerase yes 1501 736 755 30.179902 249.306313 139.7431075 2.145330397 0.205161 55 8 14923 MT_Tyr 3_flank no 284 241 263 24.679444 306.510745 165.5950945 2.219047467 -0.38138 55 9 2947 Ser1 SerAGA_i 5_flank no 283 30.721195 278.746597 154.733896 2.189585461 0.089196 55 10 5981 snR36 3_flank no 555 30.842481 302.342042 166.5922615 2.221654824 -0.046925 55 11 8090 snoRNA cluster 2 3_flank no 739 686 702 38.736815 305.567525 172.15217 2.235912501 0.039257 55 12 14554 MT_21S 21S_rRNA3 yes 4639 2521 2543 30.846468 303.061058 166.953763 2.222596212 -0.051163 55 13 12464 5S rRNA 5S yes 1420 1276 1288 76.399752 316.079141 196.2394465 2.29278631 0.141104 55 14 5820 snR35 snR35 yes 740 286 300 32.931728 270.625856 151.778792 2.181211092 0.225558 55 15 21444 TH304 - control cDNA - flipped; WTP_226 no 45.152765 331.441599 188.297182 2.274843821 -0.160955 55 16 6392 snR43 snR43/3_flank no 409 31.604058 326.152662 178.87836 2.252557805 -0.187879 55 17 4284 telomerase RNA telomerase yes 1501 456 470 78.38361 329.178048 203.780829 2.309163325 0.05617 55 18 19049 YOR234C intron no 627 361 380 28.478136 290.818089 159.6481125 2.203163788 -0.085058 55 19 516 Asp2 AspGTC_ii 3_flank no 272 76.566345 350.559207 213.562776 2.329525557 -0.105889 55 20 2680 Pro4 ProTGG_iii intron/tRNA no 302 i30 49 118.941023 383.502161 251.221592 2.400056963 -0.032201 55 21 12586 MT_15S 15S yes 1848 541 569 27.054697 322.292331 174.673514 2.242227057 -0.301568 55 22 16206 YDR381W 5_exon no 866 21 36 37.521116 295.027192 166.274154 2.220824747 0.131051 55 23 6864 snR56 5_flank no 288 56.17185 352.063056 204.117453 2.309880141 -0.252186 55 24 1872 Leu9 LeuTAG_ii tRNA/3_flank no 301 32.588023 277.298702 154.9433625 2.190172977 0.169755 55 25 2720 Pro5 ProTGG_iv 5_flank no 303 56.877002 318.824473 187.8507375 2.273812904 0.003844 55 26 6676 snR49 5_flank no 365 29.812518 301.590335 165.7014265 2.219326247 -0.077808 55 27 646 Gln2 GlnTTG_i tRNA yes 272 16 32 31.602623 277.307268 154.4549455 2.188801819 0.137636 55 28 8639 snR19 / U1 RNA 3_flank no 868 31.511032 293.466732 162.488882 2.210823651 0.030325 55 29 8176 snoRNA cluster 3; snR70 yes 743 391 407 47.677321 348.9502 198.3137605 2.29735285 -0.282237 55 30 19084 YOR293W intron no 537 441 459 29.691622 292.347148 161.019385 2.206878164 -0.027205 55 31 19541 CBP1 1.2 CBP1 1.2 yes 401 321 338 29.870931 289.653473 159.762202 2.203474038 -0.005524 55 32 17291 YHR141C intron no 541 341 360 27.992369 267.722959 147.857664 2.169843841 -0.007515 55 33 10146 RUF6 RUF6 yes 1251 576 593 42.413482 340.213212 191.313347 2.28174527 -0.24528 55 34 4219 telomerase RNA telomerase yes 1501 131 147 34.212166 296.233485 165.2228255 2.218070045 0.08274 55 35 11701 "rRNA(18S,5.8S,25S)" 25S yes 7956 5391 5404 22853.43621 18205.35818 20529.3972 4.312376197 -0.386873 55 36 20896 YLR287C-A spliced yes 40 21 37 31.990137 276.711695 154.350916 2.188509211 0.154321 55 37 269 Arg4 ArgCCT 5_flank no 272 29.858974 297.71043 163.784702 2.214273335 -0.052342 55 38 16826 YGL178W intron no 740 301 317 33.825472 359.061305 196.4433885 2.293237417 -0.42387 55 39 21822 copy of SH16002 no 432 68.336534 337.94917 203.142852 2.307801545 -0.072297 55 40 6695 snR49 snR49 yes 365 1 18 33.731215 287.47379 160.6025025 2.205752308 0.13941 55 41 3204 Ser5 SerTGA 3_flank no 282 33.713333 299.586814 166.6500735 2.22180551 0.04884 55 42 10193 RUF6 RUF6 yes 1251 811 828 43.823612 304.799974 174.311793 2.24132677 0.060259 55 43 16685 YGL030W intron no 330 161 175 72.375732 328.262076 200.318904 2.301721935 0.024054 55 44 20186 YDL191W spliced yes 40 21 35 54.114949 317.750272 185.9326105 2.269355567 -0.002192 55 45 7914 snoRNA cluster1 intergenic/snR72 no 1574 1366 1385 33.883976 305.328587 169.6062815 2.229441933 0.004015 55 46 709 Gln3 GlnTTG_ii 3_flank no 272 33.950193 298.639087 166.29464 2.220878251 0.05957 55 47 13120 MT_COX1 ai3 no 13084 6001 6023 29.924452 329.729508 179.82698 2.254854851 -0.238133 55 48 18285 YML067C intron no 193 81 98 29.925681 278.487788 154.2067345 2.188103341 0.049669 55 49 12909 MT_COX1 ai2 no 13084 2836 2853 29.913358 296.673062 163.29321 2.212968126 -0.044016 55 50 21880 copy of SH18400 no 422 60.532956 317.93222 189.232588 2.276995929 0.032335 55 51 21417 Ser4 spliced yes 40 13 25 84.067827 311.373483 197.720655 2.296052041 0.223622 55 52 15564 YBR084C exon/intron no 606 41 60 36.100524 344.631135 190.3658295 2.279588996 -0.303318 55 53 3313 Thr3 ThrTGT_i 5_flank no 272 32.072569 292.53103 162.3017995 2.210323335 0.054649 55 54 18642 YNL112W 5_exon no 1102 21 36 42.29938 284.925972 163.612676 2.213816948 0.242712 55 55 5834 snR35 snR35 yes 740 356 374 29.983765 278.66589 154.3248275 2.1884358 0.05183 55 56 4901 snR9 5_flank no 387 37.991101 296.233523 167.112312 2.223008448 0.124162 55 57 21742 copy of SH12552 no 1848 27.722027 303.656836 165.6894315 2.219294808 -0.184396 55 58 5213 snR30 5_flank no 801 33.646095 280.378138 157.0121165 2.195933168 0.182787 55 59 462 Asp1 AspGTC_i 3_flank no 271 37.61366 271.836498 154.725079 2.189560713 0.334391 55 60 1005 Gly2 GlyCCC_ii tRNA yes 272 16 34 31.620986 293.691106 162.656046 2.211270211 0.032555 55 61 13302 MT_COX1 ai5a no 13084 8731 8750 29.726565 318.849472 174.2880185 2.241267532 -0.183283 55 62 4463 telomerase RNA 3_flank no 1501 52.301062 327.463409 189.8822355 2.278484336 -0.090254 55 63 20421 YGL031C spliced yes 40 5 22 58.772853 321.109364 189.9411085 2.278618968 -0.003339 55 64 13185 MT_COX1 exon4 yes 13084 6976 6995 30.170812 310.588629 170.3797205 2.231417901 -0.119463 55 65 526 Cys1 CysGCA 5_flank no 272 655.568863 771.91763 713.7432465 2.853542012 0.383847 55 66 3091 Ser3 SerCGA 3_flank no 301 46.653566 288.092658 167.373112 2.223685691 0.223802 55 67 3852 RNaseP RNaseP yes 569 226 238 36.237479 276.276196 156.2568375 2.19383903 0.278921 55 68 21789 copy of SH14649 no 4639 42.205719 352.393266 197.2994925 2.295125968 -0.339341 55 69 5332 snR30 snR30 yes 801 511 527 31.822529 274.470675 153.146602 2.185107365 0.163808 55 70 11111 "rRNA(18S,5.8S,25S)" 18S yes 7956 2441 2461 29.630318 298.415535 164.0229265 2.214904556 -0.064725 55 71 2756 Pro5 ProTGG_iv 3_flank no 303 37.504171 291.292609 164.39839 2.21589756 0.162347 55 72 20984 YML067C spliced yes 40 1 17 31.373324 296.444559 163.9089415 2.214602646 0.007163 55 73 1889 Lys1 LysCTT_i 5_flank no 272 57.4498 333.50798 195.47889 2.291099864 -0.107256 55 74 1903 Lys1 LysCTT_i 5_flank no 272 35.48089 283.158995 159.3199425 2.202270141 0.209372 55 75 11776 "rRNA(18S,5.8S,25S)" 25S yes 7956 5766 5781 81.480424 311.137159 196.3087915 2.292939749 0.210233 55 76 8778 LSR1 / U2 RNA U2 yes 1375 531 546 40.334703 294.347091 167.340897 2.223602093 0.147478 55 77 4316 telomerase RNA telomerase yes 1501 616 630 60.827784 312.131718 186.479751 2.270631681 0.080626 55 78 6043 snR37 snR37 yes 586 131 152 28.94011 307.254052 168.097081 2.225560172 -0.143077 55 79 13294 MT_COX1 ai5a no 13084 8611 8637 31.457129 328.359217 179.908173 2.255050893 -0.206471 55 80 14839 MT_Asp tRNAAsp yes 275 106 125 27.426578 294.70966 161.068119 2.207009587 -0.161219 55 81 2088 Lys4 LysTTT_ii 3_flank no 296 29.646569 283.102413 156.374491 2.194165909 0.013225 55 82 13988 MT_COB intronic no 7308 4006 4032 29.526563 307.765234 168.6458985 2.226975784 -0.125189 55 83 2042 Lys3 LysTTT_i 3_flank no 296 31.351819 328.696813 180.024316 2.255331169 -0.210399 55 84 20845 YLR048W spliced yes 40 5 21 30.866728 303.538503 167.2026155 2.223243067 -0.053376 55 85 12223 5S rRNA NTS2 no 1420 71 92 30.263058 300.733205 165.4981315 2.218793095 -0.056906 55 86 13080 MT_COX1 ai3 no 13084 5401 5420 31.608396 295.533127 163.5707615 2.213705676 0.020628 55 87 5672 snR34 snR34 yes 750 281 298 32.875876 297.283323 165.0795995 2.217693407 0.050811 55 88 17242 YHR079C intron/exon no 186 121 138 32.221682 315.076413 173.6490475 2.239672405 -0.094479 55 89 8805 LSR1 / U2 RNA U2 yes 1375 666 685 31.720783 297.196447 164.458615 2.216056628 0.014 55 90 20988 YML067C spliced yes 40 17 35 33.286674 289.660266 161.47347 2.208101178 0.111606 55 91 18573 YNL012W 3_exon no 184 161 182 31.279326 344.670464 187.974895 2.274099851 -0.32863 55 92 13211 MT_COX1 ai4 no 13084 7366 7387 33.185555 322.213179 177.699367 2.249685881 -0.137628 55 93 6720 snR49 snR49 yes 365 126 147 35.227046 287.854595 161.5408205 2.208282284 0.165753 55 94 20311 YER007C-A spliced yes 40 9 29 29.778721 306.244694 168.0117075 2.225339546 -0.10719 55 95 16518 YER117W 3_exon no 571 541 557 45.295275 292.384244 168.8397595 2.227474725 0.179034 55 96 16824 YGL178W intron no 740 261 279 30.16046 312.38351 171.271985 2.233686331 -0.130431 55 97 10764 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 706 726 30.257634 308.055637 169.1566355 2.228289039 -0.101386 55 98 12684 MT_Trp 3_flank no 274 181 207 28.335669 325.872327 177.103998 2.248228365 -0.273435 55 99 12867 MT_COX1 ai1 no 13084 2206 2230 28.252544 284.125176 156.18886 2.193650055 -0.066412 55 100 4657 snR3 3_flank no 395 33.852309 313.222192 173.5372505 2.239392712 -0.059452 55 101 4767 snR5 snR5 yes 404 6 23 33.653752 264.677334 149.165543 2.173668513 0.289127 55 102 18800 YNL301C intron no 532 341 360 31.558694 306.08251 168.820602 2.227425445 -0.045592 55 103 2571 Pro2 ProTGG_i tRNA yes 303 61 73 54.346385 282.014113 168.180249 2.225774991 0.310873 55 104 5636 snR34 snR34 yes 750 101 118 31.261558 335.940707 183.6011325 2.263875356 -0.265465 56 2 8763 LSR1 / U2 RNA U2 yes 1375 456 475 42.170872 356.56238 199.366626 2.299652459 -0.370592 56 3 17575 YJL191W 5_exon no 508 21 39 35.61174 317.580671 176.5962055 2.246981368 -0.076166 56 4 19076 YOR293W intron no 537 281 293 65.07657 285.11534 175.095955 2.243276113 0.333631 56 5 17679 YKL006W intron no 498 81 97 58.832028 378.470219 218.6511235 2.339751713 -0.414352 56 6 21628 copy of SH7733 no 1574 29.788882 263.938794 146.863838 2.166914873 0.114 56 7 19526 CBP1 1.2 CBP1 1.2 yes 401 21 40 43.626271 315.82624 179.7262555 2.254611526 -0.03786 56 8 10807 "rRNA(18S,5.8S,25S)" 18S yes 7956 921 939 2938.202008 6064.300581 4501.251295 3.653333259 -1.059747 56 9 5893 snR36 5_flank no 555 30.72039 309.314236 170.017313 2.230493148 -0.093043 56 10 7257 snR65 snR65 yes 300 61 80 30.846689 301.513283 166.179986 2.220578718 -0.041729 56 11 13765 MT_COB intronic no 7308 661 683 30.863636 306.39199 168.627813 2.226929208 -0.070708 56 12 20265 YDR424C spliced yes 40 5 21 32.783088 311.428685 172.1058865 2.235795725 -0.058549 56 13 3873 RNaseP RNaseP yes 569 331 343 86.817407 337.792225 212.304816 2.326959846 0.048995 56 14 5278 snR30 snR30 yes 801 241 257 32.816622 280.299277 156.5579495 2.194675125 0.157239 56 15 19736 Negative Control no 60 NA #VALUE! 33.024247 301.422195 167.223221 2.223296584 0.025195 56 16 6978 snR60 5_flank no 304 38.394607 305.143635 171.769121 2.234945093 0.042326 56 17 12427 5S rRNA NTS2 no 1420 1091 1108 31.853688 275.520497 153.6870925 2.186637395 0.157801 56 18 12908 MT_COX1 ai2 no 13084 2821 2840 31.328709 294.760697 163.044703 2.212306694 0.016165 56 19 17311 YHR203C intron no 369 201 219 28.635278 278.523256 153.579267 2.18633259 -0.018987 56 20 589 Gln1 GlnCTG 5_flank/tRNA no 272 67.04097 375.779881 221.4104255 2.345198067 -0.337501 56 21 12702 MT_ORF 8 ORF8 yes 491 196 217 28.969808 307.62938 168.299594 2.226083068 -0.144254 56 22 8811 LSR1 / U2 RNA U2 yes 1375 696 710 414.785275 774.54773 594.6665025 2.774273475 -0.162048 56 23 15246 MT_fMet tRNA yes 274 121 138 30.678269 301.206507 165.942388 2.219957336 -0.045572 56 24 16205 YDR381W 5_exon no 866 1 15 44.751011 305.631484 175.1912475 2.243512405 0.055768 56 25 5966 snR36 snR36 yes 555 286 304 29.916909 306.363807 168.140358 2.225671968 -0.103071 56 26 12086 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7316 7333 51.775284 326.871021 189.3231525 2.277203727 -0.088565 56 27 3078 Ser3 SerCGA tRNA yes 301 918.892388 1217.814298 1068.353343 3.028714913 0.042508 56 28 5640 snR34 snR34 yes 750 121 133 72.440649 325.288068 198.8643585 2.298556954 0.046322 56 29 20163 YDL130W spliced yes 40 25 39 59.375751 335.32799 197.3518705 2.295241247 -0.109249 56 30 2492 Pro1 ProAGG 5_flank no 272 55.658786 296.749609 176.2041975 2.24601625 0.183159 56 31 3254 Thr1 ThrAGT 3_flank no 273 29.705762 291.789742 160.747752 2.206144908 -0.023924 56 32 2337 Phe3 PheGAA_iii tRNA yes 291 11 25 89.970937 353.241027 221.605982 2.345581479 -0.033807 56 33 6090 snR37 snR37 yes 586 366 383 30.032205 290.776813 160.404509 2.205216572 -0.002914 56 34 19619 RNA14 1.1 RNA14 1.1 yes 401 281 300 30.069447 330.750717 180.410082 2.256260804 -0.243086 56 35 20966 YML026C spliced yes 40 9 27 32.065176 287.999954 160.032565 2.204208366 0.08315 56 36 3419 Trp1 TrpCCA 5_flank no 306 60.598369 301.996963 181.297666 2.258392213 0.163017 56 37 20357 YER117W spliced yes 40 21 37 31.871831 288.983079 160.427455 2.205278694 0.07056 56 38 16591 YFL034C intron no 421 181 202 31.786341 329.990701 180.888521 2.257411008 -0.214409 56 39 16815 YGL178W intron no 740 81 96 41.828202 292.383027 167.1056145 2.222991042 0.169504 56 40 5208 snR13 3_flank no 324 29.662297 274.251763 151.95703 2.181720797 0.056344 56 41 7581 snR189 5_flank no 389 31.641156 295.877701 163.7594285 2.214206314 0.019564 56 42 6042 snR37 snR37 yes 586 126 145 29.619249 319.216944 174.4180965 2.241591543 -0.189181 56 43 1669 Leu6 LeuGAG 5_flank no 282 31.646391 282.795345 157.220868 2.19651019 0.102999 56 44 21374 Leu8_9 spliced yes 40 9 25 49.900974 298.446847 174.1739105 2.240983103 0.14041 56 45 13613 MT_ATP6 5_flank no 980 1 29 35.810216 314.334689 175.0724525 2.243217816 -0.046953 56 46 18213 YML025C intron no 199 61 73 54.190169 282.483596 168.3368825 2.22617928 0.305775 56 47 1725 Leu7 LeuTAA 5_flank no 284 31.864001 321.642139 176.75307 2.247366966 -0.150071 56 48 14573 MT_21S 21S/intronic no 4639 2806 2822 29.834277 302.954984 166.3946305 2.221139308 -0.085359 56 49 19493 YPT1 YPT1 yes 402 161 180 33.854231 315.766057 174.810144 2.242566631 -0.079418 56 50 16106 YDR064W exon/intron no 639 41 53 39.91392 262.919471 151.4166955 2.180173764 0.441395 56 51 17949 YLR128W intron/exon no 194 141 164 35.869105 342.549159 189.209132 2.276942093 -0.286974 56 52 10114 RUF6 RUF6 yes 1251 416 438 73.797892 389.352092 231.574992 2.364691658 -0.371918 56 53 1383 Leu1 LeuCAA_i 5_flank/tRNA no 315 29.865088 300.252093 165.0585905 2.217638132 -0.067781 56 54 14997 MT_COX 2; ORF1 COX2 no 2427 556 575 31.887179 289.473591 160.680385 2.205962864 0.06794 56 55 8899 LSR1 / U2 RNA U2 yes 1375 1136 1152 29.795132 263.992078 146.893605 2.167002889 0.114058 56 56 2255 Phe1 PheGAA_i 3_flank no 292 31.68343 292.91058 162.297005 2.210310506 0.039515 56 57 14414 MT_21S 21S_rRNA3 yes 4639 421 442 39.553706 331.476764 185.515235 2.268379581 -0.184482 56 58 5633 snR34 snR34 yes 750 86 105 29.395285 303.753836 166.5745605 2.221608676 -0.105686 56 59 10578 RUF8 RUF8 yes 1151 816 832 49.328241 311.417763 180.373002 2.256171533 0.025269 56 60 15835 YDL075W intron no 521 141 158 71.580475 320.883388 196.2319315 2.292769679 0.074937 56 61 2279 Phe2 PheGAA_ii 5_flank/tRNA no 292 33.525782 324.922484 179.224133 2.253396488 -0.154098 56 62 15060 MT_COX 2; ORF1 ORF1exon1 yes 2427 1501 1522 31.723556 299.843571 165.7835635 2.219541471 -0.002235 56 63 6174 snR40 5_flank no 297 29.900942 301.619517 165.7602295 2.219480339 -0.074894 56 64 14196 MT_COB exon6 yes 7308 7126 7145 30.046726 304.473021 167.2598735 2.223391764 -0.087152 56 65 4760 snR5 5_flank no 404 30.111476 274.689921 152.4006985 2.182986958 0.077571 56 66 5816 snR35 snR35 yes 740 266 282 34.175995 301.999434 168.0877145 2.225535972 0.034662 56 67 5110 snR11 snR11 yes 458 151 165 34.063125 290.339774 162.2014495 2.210054731 0.130596 56 68 6230 snR42 5_flank no 551 33.89115 315.151577 174.5213635 2.241848597 -0.074153 56 69 10961 "rRNA(18S,5.8S,25S)" 18S yes 7956 1691 1709 27646.15373 14849.02592 21247.58983 4.327309674 0.18472 56 70 11754 "rRNA(18S,5.8S,25S)" 25S yes 7956 5656 5674 8589.927982 16070.90385 12330.41592 4.090977726 -1.375549 56 71 13442 MT_COX1 intronic no 13084 10831 10853 29.318808 329.40655 179.362679 2.253732082 -0.25768 56 72 9031 snR17a / U3a U3a yes 690 441 456 1108.326517 1483.135601 1295.731059 3.112514869 -0.032208 56 73 14640 MT_21S sce1/intronic no 4639 3811 3837 31.201557 300.562164 165.8818605 2.219798898 -0.023967 56 74 8885 LSR1 / U2 RNA U2 yes 1375 1066 1083 31.332719 290.172074 160.7523965 2.206157456 0.045186 56 75 13344 MT_COX1 ai5a no 13084 9361 9385 29.606034 317.411163 173.5085985 2.239321002 -0.179202 56 76 5819 snR35 snR35 yes 740 281 295 60.75389 308.869598 184.811744 2.266729565 0.106757 56 77 9004 snR17a / U3a U3a yes 690 306 321 51.28976 302.259366 176.774563 2.247419772 0.113643 56 78 16345 YDR500C intron no 439 181 198 35.219582 309.486092 172.352837 2.236418436 -0.013402 56 79 8110 snoRNA cluster 3; 5_flank no 743 61 80 31.453919 304.43559 167.9447545 2.225166444 -0.039132 56 80 8922 LSR1 / U2 RNA 3_flank no 1375 36.072813 322.617787 179.3453 2.25369 -0.11896 56 81 779 Glu1 GluCTC 5_flank no 272 34.029488 298.394068 166.211778 2.220661795 0.062564 56 82 4346 telomerase RNA telomerase yes 1501 766 785 31.760263 316.499177 174.12972 2.240872902 -0.111586 56 83 17147 YHR012W 5_exon no 219 1 20 31.451159 306.376909 168.914034 2.227665734 -0.050927 56 84 11000 "rRNA(18S,5.8S,25S)" 18S yes 7956 1886 1902 7467.192555 9472.377628 8469.785092 3.927872391 -0.665815 56 85 15178 MT_COX3 5_flank/cox3 no 1010 91 112 30.352425 324.961109 177.656767 2.249581755 -0.196484 56 86 15412 YBL059C 3_exon no 185 141 157 35.713577 294.040595 164.877086 2.217160303 0.118886 56 87 16511 YER117W intron no 571 401 420 28.976736 318.602913 173.7898245 2.240024345 -0.208537 56 88 15182 MT_COX3 cox3 no 1010 151 167 67.165446 325.889871 196.5276585 2.29342368 0.010067 56 89 12612 MT_15S 15S yes 1848 931 948 44.96894 316.741645 180.8552925 2.257331222 -0.041481 56 90 11830 "rRNA(18S,5.8S,25S)" 25S yes 7956 6036 6051 25591.64257 20841.44803 23216.5453 4.365797596 -0.472944 56 91 4709 snR4 snR4 yes 386 81 100 29.264118 286.092673 157.6783955 2.197772192 -0.020941 56 92 13525 MT_COX1 intronic no 13084 12076 12100 32.046015 331.803996 181.9250055 2.259892397 -0.224583 56 93 19273 YPL143W intron no 625 341 360 31.230214 327.186453 179.2083335 2.253358201 -0.200627 56 94 5731 snR34 3_flank no 750 38.013405 285.665088 161.8392465 2.209083848 0.216143 56 95 21318 YPL249C-A spliced yes 40 13 27 54.479723 307.594966 181.0373445 2.257768171 0.083886 56 96 1723 Leu7 LeuTAA 5_flank no 284 28.040806 300.227054 164.13393 2.215198368 -0.151504 56 97 7255 snR65 snR65 yes 300 51 70 30.074237 287.014471 158.544354 2.200150781 0.017203 56 98 15281 MT_9S 9S yes 701 391 406 37.801071 302.385571 170.093321 2.230687261 0.066272 56 99 20903 YLR316C spliced yes 40 1 18 31.989533 340.818589 186.404061 2.27045537 -0.29156 56 100 4380 telomerase RNA telomerase yes 1501 936 948 77.012907 341.366812 209.1898595 2.320540628 -0.039633 56 101 17666 YKL006C intron no 241 61 73 85.986492 331.730186 208.858339 2.31985182 0.086267 56 102 17090 YHL001W intron no 498 181 198 32.486781 338.773356 185.6300685 2.268648325 -0.270298 56 103 13389 MT_COX1 intronic no 13084 10036 10053 40.89761 274.60238 157.749995 2.197969354 0.342752 56 104 17989 YLR275W 3_exon no 190 141 160 31.258578 286.24414 158.751359 2.200717452 0.067806 57 2 17663 YKL006C 5_exon no 241 1 18 27.235564 363.12752 195.181542 2.290438745 -0.514867 57 3 5327 snR30 snR30 yes 801 486 502 40.446449 325.860924 183.1536865 2.262815665 -0.134434 57 4 14682 MT_21S 21S_rRNA4 yes 4639 4441 4469 31.191811 337.1964 184.1941055 2.265275728 -0.27561 57 5 4777 snR5 snR5 yes 404 56 73 33.326303 284.794829 159.060566 2.201562524 0.144037 57 6 21072 YMR225C spliced yes 40 17 33 31.76505 284.712829 158.2389395 2.199313364 0.094465 57 7 16880 YGL189C 5_exon no 269 21 40 1798.512488 2067.209142 1932.860815 3.286200582 0.076698 57 8 12889 MT_COX1 ai1 no 13084 2536 2555 28.578128 280.948993 154.7635605 2.189668713 -0.033638 57 9 6287 snR42 snR42 yes 551 216 232 28.792272 278.793976 153.793124 2.186936919 -0.011786 57 10 2692 Pro4 ProTGG_iii 3_flank no 302 52.551238 326.025005 189.2881215 2.277123361 -0.077442 57 11 9016 snR17a / U3a U3a yes 690 366 384 36.750578 300.544673 168.6476255 2.226980231 0.076669 57 12 19069 YOR293W intron no 537 141 158 30.791336 289.16621 159.978773 2.204062362 0.033379 57 13 9836 RUF5-1 5_flank/RUF5-1 no 975 30.735522 279.965572 155.350547 2.191312787 0.08411 57 14 17616 YJR021C intron no 180 101 120 38.598654 313.333233 175.9659435 2.245428622 -0.031191 57 15 21547 copy of SH4256 no 1501 31.894661 283.066156 157.4804085 2.197226533 0.109397 57 16 5455 snR32 5_flank no 388 53.169493 336.478171 194.823832 2.289642081 -0.155667 57 17 2497 Pro1 ProAGG 5_flank no 272 51.873146 290.912864 171.393005 2.233993093 0.217424 57 18 16430 YER074W intron no 566 161 180 28.044381 319.620176 173.8322785 2.240130423 -0.248557 57 19 18638 YNL096C intron/exon no 445 381 402 30.501004 299.777593 165.1392985 2.217850435 -0.042868 57 20 10369 RUF7 RUF7 yes 700 456 471 32.875193 333.912623 183.393908 2.263384905 -0.229661 57 21 16390 YER044C exon/intron no 188 41 57 30.872354 272.389736 151.631045 2.180788128 0.127542 57 22 20775 YKL006C-A spliced yes 40 9 26 34.934853 295.082926 165.0088895 2.217507342 0.101013 57 23 3970 RNase MRP RNaseMRP yes 540 266 283 32.539965 287.311648 159.9258065 2.20391855 0.102904 57 24 8106 snoRNA cluster 3; 5_flank no 743 41 55 34.17767 285.56086 159.869265 2.203764978 0.165433 57 25 19989 YBL092W spliced yes 40 13 29 39.790474 307.691934 173.741204 2.239902827 0.022349 57 26 19361 YPR028W 5_exon no 233 21 39 33.336723 302.907676 168.1221995 2.225625063 0.016945 57 27 655 Gln2 GlnTTG_i tRNA yes 272 61 77 31.100333 284.612864 157.8565985 2.19826274 0.073029 57 28 4089 SRP SRP yes 875 336 348 29.045047 263.668956 146.3570015 2.165413503 0.074841 57 29 21667 copy of SH9402 no 750 85.694986 312.866745 199.2808655 2.299465601 0.221728 57 30 1084 Gly3 GlyGCC 3_flank no 271 57.310101 303.106319 180.20821 2.255774573 0.136969 57 31 4495 U3b (snR17b) U3b yes 662 31 52 29.544977 296.857259 163.201118 2.21272313 -0.058098 57 32 13134 MT_COX1 ai3 no 13084 6211 6232 29.774449 313.449583 171.612016 2.234547693 -0.150154 57 33 17348 YIL018W intron no 500 361 376 29.935087 265.98054 147.9578135 2.170137905 0.111346 57 34 3734 Val3 ValCAC 3_flank no 273 30.00209 277.806919 153.9045045 2.187251331 0.056891 57 35 2627 Pro3 ProTGG_ii tRNA yes 303 56 70 69.956661 305.901129 187.928895 2.27399356 0.183239 57 36 1803 Leu8 LeuTAG_i intron/tRNA no 301 i3 38 29.91855 273.293016 151.605783 2.180715768 0.074373 57 37 14334 MT_VAR1 VAR1 yes 1467 1216 1238 29.837147 322.565465 176.201306 2.246009123 -0.20074 57 38 9052 snR17a / U3a 3_flank no 690 35.827886 385.131138 210.479512 2.323209828 -0.610089 57 39 6053 snR37 snR37 yes 586 181 197 51.972887 305.799138 178.8860125 2.252576383 0.086158 57 40 13072 MT_COX1 ai3 no 13084 5281 5303 29.655894 354.45331 192.054602 2.283424718 -0.419865 57 41 18708 YNL130C intron no 541 241 260 31.624562 317.911129 174.7678455 2.242461532 -0.12436 57 42 53 Ala2 AlaTGC 5_flank no 273 29.591268 303.102475 166.3468715 2.221014637 -0.094795 57 43 8848 LSR1 / U2 RNA U2 yes 1375 881 895 57.859468 347.088799 202.4741335 2.306369549 -0.205642 57 44 19928 YBL018C spliced yes 40 13 32 29.629464 270.986928 150.308196 2.176982662 0.07057 57 45 4374 telomerase RNA telomerase yes 1501 906 922 37.748929 298.772553 168.260741 2.225982797 0.099732 57 46 21147 YNL246W spliced yes 40 9 23 35.786827 296.096624 165.9417255 2.219955602 0.102514 57 47 16472 YER102W intron no 460 81 98 35.80867 330.633732 183.221201 2.262975726 -0.188206 57 48 14360 MT_ORF9; ORF10 ORF9 yes 578 166 190 29.730705 311.843377 170.787041 2.232454914 -0.142231 57 49 16789 YGL103W intron no 611 461 477 35.739532 281.40177 158.570651 2.200222809 0.227763 57 50 9325 RUF1 RUF1 yes 750 201 220 35.699476 335.19283 185.446153 2.268217829 -0.22675 57 51 1164 His1 HisGTG tRNA yes 272 40 56 48150.08858 10516.3676 29333.22809 4.467359859 1.437071 57 52 20780 YKL006W spliced yes 40 5 22 37.737161 338.871026 188.3040935 2.274859761 -0.251693 57 53 5077 snR11 5_flank/snR11 no 458 56.028898 338.715819 197.3723585 2.295286331 -0.155373 57 54 6050 snR37 snR37 yes 586 166 188 29.683001 270.88595 150.2844755 2.17691412 0.073872 57 55 1079 Gly3 GlyGCC 3_flank no 271 45.738939 273.976179 159.857559 2.203733177 0.359346 57 56 15155 MT_Val 5_flank no 276 1 27 28.483772 310.226527 169.3551495 2.228798407 -0.1774 57 57 13646 MT_ATP6 ATP6 yes 980 496 517 29.33029 301.639057 165.4846735 2.218757777 -0.095134 57 58 6292 snR42 snR42 yes 551 241 255 72.272155 337.257962 204.7650585 2.31125585 -0.041497 57 59 7589 snR189 snR189 yes 389 16 30 41.055328 276.347534 158.701431 2.200580843 0.325402 57 60 18965 YOL127W 3_exon no 514 481 498 35.165367 317.716239 176.440803 2.246599026 -0.078901 57 61 12995 MT_COX1 ai2 no 13084 4126 4148 27.374813 327.137402 177.2561075 2.248601208 -0.316592 57 62 20638 YHR141C spliced yes 40 17 33 43.659489 290.539981 167.099735 2.222975761 0.191152 57 63 850 Glu2 GluTTC_i tRNA yes 272 16 30 421.117591 507.775788 464.4466895 2.666935872 0.590909 57 64 20959 YML025C spliced yes 40 5 24 29.928815 323.789953 176.859384 2.247628108 -0.204513 57 65 2825 Pro7 ProTGG_vi 5_flank no 303 36.102616 287.439647 161.7711315 2.208901023 0.179484 57 66 16877 YGL187C 3_exon no 442 401 417 44.23042 306.857278 175.543849 2.244385617 0.043123 57 67 4410 telomerase RNA telomerase yes 1501 1086 1105 29.833014 307.581734 168.707374 2.227134066 -0.113309 57 68 21364 Ile2_3 spliced yes 40 21 33 33.695232 262.16684 147.931036 2.170059299 0.30796 57 69 16709 YGL031C intron no 556 321 341 31.472792 312.034978 171.753885 2.234906569 -0.083901 57 70 4635 snR3 snR3 yes 395 91 108 53.278216 340.942473 197.1103445 2.294709417 -0.18918 57 71 18567 YNL012W exon/intron no 184 41 55 45.013923 288.521549 166.767736 2.222112033 0.214626 57 72 2408 Phe4 PheGAA_iv tRNA/3_flank no 291 29.043062 287.269627 158.1563445 2.199086618 -0.03819 57 73 7158 snR63 3_flank no 455 27.084869 299.009174 163.0470215 2.21231287 -0.199985 57 74 15088 MT_COX 2; ORF1 ORF1exon1 yes 2427 1921 1947 25.237227 320.640276 172.9387515 2.237892319 -0.402775 57 75 3559 Tyr2 TyrGTA_ii tRNA yes 289 50 62 57.65784 277.909564 167.783702 2.224749772 0.364103 57 76 888 Glu3 GluTTC_ii 5_flank no 272 29.881773 301.343824 165.6127985 2.219093896 -0.07388 57 77 6100 snR37 3_flank no 586 34.509179 282.701189 158.605184 2.200317378 0.194043 57 78 6164 snR39B 3_flank no 296 30.900164 301.438234 166.169199 2.220550526 -0.039462 57 79 9899 RUF5-1 RUF5-1 yes 975 301 318 31.356631 273.578218 152.4674245 2.183177064 0.145929 57 80 4624 snR3 snR3 yes 395 36 52 275.034506 420.141087 347.5877965 2.54106452 0.497265 57 81 15893 YDL082W intron/exon no 465 401 420 31.792253 311.205231 171.498742 2.234260939 -0.069483 57 82 8577 snR19 / U1 RNA U1 yes 868 381 398 33.85614 301.98873 167.922435 2.225108723 0.030856 57 83 9956 RUF5-1 RUF5-1 yes 975 586 602 31.412065 288.135828 159.7739465 2.203505963 0.060793 57 84 8931 snR17a / U3a 5_flank no 690 33.04875 317.739225 175.3939875 2.244014702 -0.104784 57 85 5048 snR10 3_flank no 445 32.40693 266.471117 149.4390235 2.174464021 0.23217 57 86 4650 snR3 snR3 yes 395 166 180 34.703178 275.354571 155.0288745 2.190412594 0.248377 57 87 11276 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3266 3283 44.75517 302.501787 173.6284785 2.23962096 0.084015 57 88 5142 snR11 3_flank no 458 43.766584 285.087859 164.4272215 2.215973718 0.244239 57 89 9933 RUF5-1 RUF5-1 yes 975 471 490 35.372745 285.727641 160.550193 2.205610832 0.18579 57 90 14456 MT_21S 21S_rRNA3 yes 4639 1051 1079 31.173751 317.2418 174.2077755 2.241067535 -0.125096 57 91 6307 snR42 snR42 yes 551 316 332 49.530308 300.075508 174.802908 2.242548653 0.124212 57 92 17607 YJL205C intron no 243 161 177 41.982092 273.95698 157.969536 2.198573343 0.351716 57 93 18368 YMR079W intron no 256 101 120 29.08353 273.445403 151.2644665 2.17973692 0.029648 57 94 8006 snoRNA cluster 2 intergenic no 739 266 286 31.085088 288.939405 160.0122465 2.204153223 0.044739 57 95 2930 Pro8 ProTGG_vii 3_flank no 305 36.908782 319.953187 178.4309845 2.251470272 -0.093696 57 96 192 Arg2 ArgACG_ii 3_flank no 273 29.603475 285.449568 157.5265215 2.197353683 -0.00003 57 97 15577 YBR084C intron no 606 301 320 30.699704 303.116417 166.9080605 2.222477311 -0.05648 57 98 13520 MT_COX1 intronic no 13084 12001 12022 29.832665 311.99196 170.9123125 2.23277335 -0.139533 57 99 14999 MT_COX 2; ORF1 COX2 no 2427 586 605 27.933636 264.522609 146.2281225 2.165030904 0.002184 57 100 6785 snR50 3_flank no 290 31.660261 274.132748 152.8965045 2.184397557 0.158205 57 101 1045 Gly3 GlyGCC 5_flank no 271 31.54568 294.002196 162.773938 2.211584871 0.028116 57 102 18209 YML024W 3_exon no 498 481 498 31.419045 292.427589 161.923317 2.209309392 0.033803 57 103 6761 snR50 5_flank no 290 44.593025 331.495821 188.044423 2.274260458 -0.16445 57 104 20167 YDL136W spliced yes 40 13 27 33.100793 350.695675 191.898234 2.283070978 -0.359979 58 2 1909 Lys1 LysCTT_i tRNA yes 272 1 13 31.263131 319.148334 175.2057325 2.243548312 -0.138718 58 3 353 Arg5 ArgTCT 3_flank no 272 154.237592 362.566151 258.4018715 2.412295655 0.283987 58 4 15350 YBL018C 3_exon no 175 141 155 61.931887 321.229409 191.580648 2.282351638 0.014402 58 5 5757 snR35 5_flank no 740 43.091679 268.455651 155.773665 2.192494038 0.410777 58 6 7464 snR71 5_flank no 290 45.399977 270.654234 158.0271055 2.198731585 0.392752 58 7 10140 RUF6 RUF6 yes 1251 546 563 55.584002 356.200157 205.8920795 2.31363964 -0.28548 58 8 19730 Negative Control no 60 NA #VALUE! 38.409285 295.914164 167.1617245 2.223136843 0.128176 58 9 4795 snR5 snR5 yes 404 146 168 26.877356 316.94386 171.910608 2.235302676 -0.289503 58 10 11828 "rRNA(18S,5.8S,25S)" 25S yes 7956 6026 6043 13627.12906 12319.4295 12973.27928 4.113049767 -0.369654 58 11 13662 MT_ATP6 ATP6 yes 980 736 756 32.7924 304.614958 168.703679 2.227124554 -0.003761 58 12 10618 RUF8 3_flank no 1151 30.745674 308.577239 169.6614565 2.229583191 -0.087792 58 13 2172 Met2 MetCAT_ii 5_flank/tRNA no 272 36.53093 333.861657 185.1962935 2.267632291 -0.213529 58 14 19599 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 281 296 40.450272 324.740085 182.5951785 2.261489306 -0.124969 58 15 19278 YPL143W intron no 625 441 457 40.622507 373.510917 207.066712 2.316110287 -0.502365 58 16 19449 CYC1 CYC1 yes 400 81 95 104.159508 378.622271 241.3908895 2.382720875 -0.097649 58 17 4446 telomerase RNA telomerase yes 1501 1266 1278 61.740374 336.985898 199.363136 2.299644857 -0.107781 58 18 20371 YER133W spliced yes 40 25 40 56.496115 313.347883 184.921999 2.266988579 0.046703 58 19 9002 snR17a / U3a U3a yes 690 296 308 31.354648 278.443203 154.8989255 2.190048405 0.121884 58 20 15208 MT_COX3 cox3 no 1010 541 557 36.842187 289.675755 163.258971 2.212877055 0.168729 58 21 9391 RUF1 RUF1 yes 750 531 548 71.762419 380.977491 226.369955 2.354818785 -0.336036 58 22 5750 snR35 5_flank no 740 32.619356 319.219693 175.9195245 2.245314042 -0.121687 58 23 15422 YBL072C 5_exon no 408 1 18 32.298385 277.873028 155.0857065 2.190571773 0.156624 58 24 4487 U3b (snR17b) 5_flank/U3b no 662 31.875666 322.717141 177.2964035 2.248699926 -0.158166 58 25 1574 Leu4 LeuCAA_iv tRNA-intron no 314 i3 i19 37.450264 319.035917 178.2430905 2.251012704 -0.084344 58 26 18235 YML026C intron no 501 301 321 29.101286 299.181639 164.1414625 2.215218299 -0.089181 58 27 19879 Negative Control no 60 NA #VALUE! 36.740298 307.220304 171.980301 2.235478705 0.019353 58 28 6852 snR52 3_flank no 292 28.824529 324.754685 176.789607 2.24745673 -0.249248 58 29 4896 snR8 3_flank no 390 30.881324 306.398009 168.6396665 2.226959735 -0.070146 58 30 4713 snR4 snR4 yes 386 101 115 41.023133 302.344881 171.684007 2.234729841 0.074117 58 31 19019 YOR182C intron no 511 261 280 29.397974 311.497058 170.447516 2.231590676 -0.151937 58 32 14772 MT_ORF11; Leu; Gln tRNALeu yes 716 466 485 29.652149 293.336863 161.494506 2.208157752 -0.033773 58 33 2214 Phe1 PheGAA_i 5_flank no 292 29.837643 323.024222 176.4309325 2.24657473 -0.203339 58 34 18442 YMR142C intron no 502 341 361 27.901701 332.154625 180.028163 2.25534045 -0.324708 58 35 17909 YLR061W intron no 489 241 258 29.93884 286.403784 158.171312 2.199127717 0.013029 58 36 20019 YBR089C-A spliced yes 40 9 26 29.895703 278.454525 154.175114 2.188014278 0.048271 58 37 18282 YML067C 5_exon no 193 21 36 66.523631 395.701778 231.1127045 2.36382382 -0.465188 58 38 12618 MT_15S 15S yes 1848 1021 1043 29.778276 369.513983 199.6461295 2.300260895 -0.520997 58 39 19707 Negative Control no 60 NA #VALUE! 31.746893 305.439454 168.5931735 2.226839986 -0.035511 58 40 13705 MT_Glu (and 5_flank processing site for COB) tRNA yes 368 106 123 31.6994 265.860939 148.7801695 2.172545049 0.200924 58 41 9026 snR17a / U3a U3a yes 690 416 431 75.319803 320.263727 197.791765 2.296208206 0.102627 58 42 10602 RUF8 RUF8 yes 1151 936 951 47.758494 323.441963 185.6002285 2.268578507 -0.08268 58 43 1884 Leu9 LeuTAG_ii 3_flank no 301 31.606383 284.078025 157.842204 2.198223136 0.093346 58 44 20277 YDR450W spliced yes 40 1 18 35.646087 289.968143 162.807115 2.211673381 0.15257 58 45 13937 MT_COB bi3 no 7308 3241 3260 33.667717 334.63212 184.1499185 2.265171531 -0.227422 58 46 4057 SRP SRP yes 875 176 194 29.668669 284.145433 156.907051 2.19564246 0.009485 58 47 13350 MT_COX1 intronic no 13084 9451 9479 28.661863 316.882951 172.772407 2.237474384 -0.209979 58 48 17798 YKL186C 3_exon no 249 221 233 31.644322 260.33507 145.989696 2.164322204 0.226191 58 49 3386 Thr4 ThrTGT_ii tRNA yes 272 16 30 43.672985 309.66791 176.6704475 2.247163909 0.016307 58 50 220 Arg3 ArgCCG 5_flank no 272 63.841958 334.54987 199.195914 2.299280426 -0.075886 58 51 14969 MT_COX 2; ORF1 COX2 no 2427 136 153 39.560544 281.215472 160.388008 2.205171894 0.271458 58 52 14714 MT_Cys; His 5_flank no 456 31 59 29.533705 348.690365 189.112035 2.276719168 -0.381064 58 53 13412 MT_COX1 intronic no 13084 10381 10403 29.546094 305.53827 167.542182 2.224124167 -0.111127 58 54 13163 MT_COX1 intronic no 13084 6646 6668 27.525984 312.78369 170.154837 2.230844299 -0.234857 58 55 18016 YLR287C 3_exon no 530 501 513 41.474301 276.319955 158.897128 2.201116048 0.326608 58 56 20249 YDR381C-A spliced yes 40 9 30 29.327673 325.574683 177.451178 2.249078887 -0.235821 58 57 17541 YJL177W intron no 417 221 239 59.063494 324.336093 191.6997935 2.282621645 -0.026859 58 58 5875 snR35 3_flank no 740 51.862131 314.292334 183.0772325 2.262634339 0.013516 58 59 21491 copy of SH2039 no 296 36.934022 303.523686 170.228854 2.231033175 0.053657 58 60 3853 RNaseP RNaseP yes 569 231 243 31.089707 270.690679 150.890193 2.178661014 0.146775 58 61 2994 Ser2 SerAGA_ii 5_flank no 282 63.281623 291.051584 177.1666035 2.248381859 0.271545 58 62 12797 MT_COX1 ai1 no 13084 1156 1173 41.534323 319.138172 180.3362475 2.256083028 -0.073473 58 63 4168 SRP 3_flank no 875 31.715092 299.962198 165.838645 2.219685741 -0.003242 58 64 16172 YDR305C 5_exon no 189 1 20 33.888072 338.131905 186.0099885 2.269536266 -0.255897 58 65 9820 RUF5-1 5_flank no 975 40.033085 294.560509 167.296797 2.223487626 0.144767 58 66 6565 snR47 5_flank no 299 39.950206 279.487003 159.7186045 2.203355507 0.290753 58 67 13757 MT_COB intronic no 7308 541 563 29.6694 344.76149 187.215445 2.272341675 -0.351162 58 68 3462 Trp1 TrpCCA 3_flank no 306 49.593443 332.035521 190.814482 2.280611333 -0.141922 58 69 9003 snR17a / U3a U3a yes 690 301 315 39.249301 275.635174 157.4422375 2.197121253 0.317721 58 70 12154 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7656 7673 300.767885 720.395874 510.5818795 2.708065398 -0.403423 58 71 7078 snR62 3_flank no 300 30.923087 315.641673 173.28238 2.238754404 -0.123459 58 72 497 Asp2 AspGTC_ii tRNA yes 272 46 62 48.583194 284.6533 166.618247 2.221722561 0.262517 58 73 2145 Met1 MetCAT_i 3_flank no 273 34.808357 300.175239 167.491798 2.223993545 0.057226 58 74 18853 YNR053C exon/intron no 631 41 55 48.883209 303.239111 176.06116 2.245663559 0.093298 58 75 12893 MT_COX1 ai1/intronic no 13084 2596 2618 27.355987 310.156595 168.756291 2.227259972 -0.233251 58 76 20005 YBR082C spliced yes 40 1 18 29.750762 307.341644 168.546203 2.226718973 -0.114754 58 77 11075 "rRNA(18S,5.8S,25S)" 18S yes 7956 2261 2278 240.572034 392.768265 316.6701495 2.500607127 0.505519 58 78 14575 MT_21S intronic no 4639 2836 2860 28.655963 329.32967 178.9928165 2.252835602 -0.281129 58 79 19293 YPL175W intron no 200 121 140 29.067299 324.170134 176.6187165 2.247036724 -0.237173 58 80 17035 YGR183C intron no 313 141 157 40.065584 305.444345 172.7549645 2.237430537 0.043463 58 81 21711 copy of SH11291 no 7956 31.61337 281.614482 156.613926 2.194830377 0.109613 58 82 20968 YML026C spliced yes 40 17 33 33.684922 285.318784 159.501853 2.202765733 0.15183 58 83 12217 5S rRNA NTS2 no 1420 41 55 33.408825 311.56785 172.4883375 2.236759736 -0.051824 58 84 3988 RNase MRP 3_flank no 540 32.956241 301.304114 167.1301775 2.223054874 0.02531 58 85 1735 Leu7 LeuTAA 5_flank no 284 40.614795 290.423753 165.519274 2.218848573 0.185602 58 86 21048 YMR142C spliced yes 40 17 33 37.718749 293.996873 165.857811 2.219735929 0.141872 58 87 2950 Ser1 SerAGA_i 5_flank/tRNA no 283 30.935418 324.042548 177.488983 2.249171401 -0.180692 58 88 13359 MT_COX1 intronic no 13084 9586 9603 34.097912 314.101007 174.0994595 2.240797423 -0.063382 58 89 6457 snR45 snR45 yes 372 131 148 60.044172 309.994059 185.0191155 2.2672166 0.093374 58 90 21474 copyu of SH1441 no 314 51.628825 316.173797 183.901311 2.264584825 -0.003273 58 91 7024 snR62 5_flank no 300 28.932615 307.980824 168.4567195 2.226488339 -0.147698 58 92 9505 RUF3 5_flank no 631 45.332976 314.483335 179.9081555 2.255050851 -0.020706 58 93 3192 Ser5 SerTGA tRNA/3_flank no 282 36.110026 319.624684 177.867355 2.250096247 -0.092823 58 94 5779 snR35 snR35 yes 740 81 100 32.531903 306.302774 169.4173385 2.228957855 -0.020719 58 95 16145 YDR092W intron no 368 181 198 29.001705 284.720987 156.861346 2.195515937 -0.028537 58 96 4926 snR9 snR9 yes 387 36 52 38.466405 275.520896 156.9936505 2.195882088 0.310403 58 97 10803 "rRNA(18S,5.8S,25S)" 18S yes 7956 901 916 1504.862984 1483.287795 1494.07539 3.174372512 0.366104 58 98 3538 Tyr2 TyrGTA_ii 5_flank no 289 27.55474 266.218379 146.8865595 2.166982059 -0.029115 58 99 20929 YLR388W spliced yes 40 5 26 35.108769 302.753493 168.931131 2.22770969 0.039648 58 100 16760 YGL087C intron no 185 61 80 36.985238 326.153646 181.569442 2.259042759 -0.147136 58 101 2970 Ser1 SerAGA_i tRNA/3_flank no 283 31.292334 312.876456 172.084395 2.235741489 -0.094864 58 102 21067 YMR201C spliced yes 40 21 37 53.922917 357.296831 205.609874 2.313043967 -0.304081 58 103 19097 YOR312C intron no 507 161 178 34.94318 259.610284 147.276732 2.168134139 0.363978 58 104 19943 YBL040C spliced yes 40 5 21 33.019373 307.563276 170.2913245 2.231192523 -0.02471 59 2 5760 snR35 5_flank/snR35 no 740 31.583576 360.986198 196.284887 2.292886862 -0.44507 59 3 12410 5S rRNA NTS2 no 1420 1006 1023 33.529113 292.269013 162.899063 2.211918586 0.102676 59 4 14947 MT_Met 5_flank/tRNA no 276 76 101 27.925251 362.453371 195.189311 2.290456031 -0.49992 59 5 536 Cys1 CysGCA 5_flank no 272 39.610451 291.896389 165.75342 2.219462498 0.169184 59 6 7802 snoRNA cluster1 snR75 yes 1574 806 823 30.253577 266.801903 148.52774 2.171807573 0.123684 59 7 20270 YDR424C spliced yes 40 25 40 37.308624 276.883716 157.09617 2.196165597 0.285555 59 8 5135 snR11 3_flank no 458 28.760081 287.890956 158.3255185 2.199550919 -0.05628 59 9 5814 snR35 snR35 yes 740 256 272 28.877603 280.048535 154.463069 2.18882466 -0.013166 59 10 9081 snR14 / U4 RNA U4 yes 360 21 35 40.695808 321.449179 181.0724935 2.257852482 -0.096169 59 11 2706 Pro5 ProTGG_iv 5_flank no 303 48.492596 287.093781 167.7931885 2.224774327 0.238835 59 12 17678 YKL006W intron no 498 61 77 30.689142 296.077682 163.383412 2.213207961 -0.013581 59 13 12038 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7076 7096 32.550495 285.33843 158.9444625 2.201245402 0.11593 59 14 9253 snR6 / U6 RNA 3_flank no 312 32.545718 305.187053 168.8663855 2.227543208 -0.011525 59 15 6988 snR60 snR60 yes 304 21 37 34.634289 300.075155 167.354722 2.223637971 0.055975 59 16 10835 "rRNA(18S,5.8S,25S)" 18S yes 7956 1061 1079 32.963056 290.413441 161.6882485 2.208678457 0.096623 59 17 12764 MT_COX1 ai1 no 13084 661 677 31.382499 283.786456 157.5844775 2.197513436 0.087814 59 18 17710 YKL081W intron no 426 201 218 31.83192 287.319529 159.5757245 2.202966825 0.079881 59 19 10900 "rRNA(18S,5.8S,25S)" 18S yes 7956 1386 1403 153.393355 451.183624 302.2884895 2.48042161 -0.170975 59 20 19160 YPL075W intron no 851 721 738 32.499027 305.973129 169.236078 2.228492952 -0.018476 59 21 17917 YLR061W intron no 489 401 423 30.475303 327.052271 178.763787 2.252279546 -0.209745 59 22 20960 YML025C spliced yes 40 9 28 30.310832 327.272039 178.7914355 2.252346711 -0.213645 59 23 399 Asn1 AsnGTT 3_flank no 274 37.119669 315.326421 176.223045 2.246062701 -0.052476 59 24 21838 copy of SH16603 no 214 96.903198 341.59321 219.248204 2.340936044 0.087161 59 25 2814 Pro6 ProTGG_v 3_flank no 302 31.140655 276.525576 153.8331155 2.187049836 0.12092 59 26 15231 MT_COX3 cox3/3_flank no 1010 886 902 31.768488 297.072138 164.420313 2.215955471 0.01634 59 27 5402 snR31 snR31 yes 425 76 88 47.185525 306.225463 176.705494 2.247250052 0.058747 59 28 21414 Ser4 spliced yes 40 1 15 38.344705 288.65808 163.5013925 2.213521456 0.193978 59 29 7601 snR189 snR189 yes 389 76 92 34.601912 323.859008 179.23046 2.253411819 -0.133491 59 30 14995 MT_COX 2; ORF1 COX2 no 2427 526 546 28.986658 290.711889 159.8492735 2.203710667 -0.057072 59 31 9403 RUF1 3_flank no 750 55.253265 274.586853 164.920059 2.217273481 0.385392 59 32 5939 snR36 snR36 yes 555 151 170 27.55075 278.191425 152.8710875 2.184325355 -0.078449 59 33 10400 RUF8 5_flank no 1151 31.775854 311.764017 171.7699355 2.234947153 -0.07413 59 34 12935 MT_COX1 ai2 no 13084 3226 3245 29.867388 300.531285 165.1993365 2.218008299 -0.069411 59 35 16619 YFL039C intron no 408 121 142 33.955994 289.714486 161.83524 2.209073096 0.13205 59 36 14114 MT_COB intronic no 7308 5896 5920 27.852488 277.927129 152.8898085 2.184378537 -0.0592 59 37 16620 YFL039C intron no 408 141 158 58.343624 327.511849 192.9277365 2.285394669 -0.055873 59 38 6175 snR40 5_flank no 297 31.827074 300.535509 166.1812915 2.22058213 -0.003077 59 39 2648 Pro4 ProTGG_iii 5_flank no 302 29.774553 289.437837 159.606195 2.203049744 -0.009553 59 40 17130 YHR010W intron no 661 321 333 85.51245 343.257085 214.3847675 2.331193925 0.003176 59 41 3642 Val2 ValAAC_ii 5_flank no 274 29.704421 304.85368 167.2790505 2.223441555 -0.101417 59 42 3073 Ser3 SerCGA tRNA yes 301 42 54 39.752177 260.192781 149.972479 2.17601157 0.465477 59 43 5608 snR34 5_flank no 750 45.783298 323.801731 184.7925145 2.266684375 -0.095989 59 44 19648 SIR1 2.2 SIR1 2.2 yes 401 81 100 31.640087 294.584291 163.112189 2.212486416 0.027595 59 45 18436 YMR142C intron no 502 221 240 29.630612 304.736918 167.183765 2.223194101 -0.103309 59 46 19910 YAL001C spliced yes 40 21 38 33.64864 314.850975 174.2498075 2.241172307 -0.074768 59 47 6691 snR49 5_flank no 365 29.602694 282.783761 156.1932275 2.193662199 0.012423 59 48 8365 snoRNA cluster4 3_flank no 638 611 632 33.569239 338.28602 185.9276295 2.269343932 -0.258033 59 49 13660 MT_ATP6 ATP6 yes 980 706 727 29.501117 280.644159 155.072638 2.190535175 0.017196 59 50 14404 MT_21S 21S_rRNA3 yes 4639 271 297 29.45617 312.819404 171.137787 2.233345912 -0.157672 59 51 14212 MT_ATP9 5_flank/ATP9 no 431 76 103 31.433187 305.396849 168.415018 2.226380816 -0.045624 59 52 21121 YNL112W spliced yes 40 9 23 39.444955 318.367888 178.9064215 2.252625929 -0.073749 59 53 4274 telomerase RNA telomerase yes 1501 406 420 47.48509 245.288198 146.386644 2.165501454 0.671813 59 54 15119 MT_COX 2; ORF1 3_flank no 2427 2386 2412 29.408568 294.281759 161.8451635 2.209099726 -0.050872 59 55 17113 YHR001W 3_exon no 163 141 157 33.314095 290.623078 161.9685865 2.209430792 0.106356 59 56 561 Cys1 CysGCA 3_flank no 272 33.177757 270.373728 151.7757425 2.181202366 0.235047 59 57 3890 RNaseP 3_flank no 569 33.030665 329.447414 181.2390395 2.258251752 -0.194437 59 58 5870 snR35 snR35/3_flank no 740 36.872329 274.138103 155.505216 2.191744961 0.305312 59 59 17600 YJL205C 5_exon no 243 21 35 43.779427 283.496287 163.637857 2.213883783 0.259908 59 60 8850 LSR1 / U2 RNA U2 yes 1375 891 908 38.960903 321.814272 180.3875875 2.25620665 -0.10496 59 61 6606 snR47 3_flank no 299 31.238682 326.444978 178.84183 2.252469105 -0.194907 59 62 6066 snR37 snR37 yes 586 246 263 29.467129 277.948926 153.7080275 2.186696549 0.028255 59 63 12640 MT_15S 15S yes 1848 1351 1365 184.414727 422.038867 303.226797 2.481767578 0.124079 59 64 9834 RUF5-1 5_flank no 975 29.764994 317.822697 173.7938455 2.240034393 -0.175996 59 65 20948 YLR448W spliced yes 40 9 23 95.55099 312.170997 203.8609935 2.309334136 0.285763 59 66 4941 snR9 snR9 yes 387 111 129 41.798632 289.183936 165.491284 2.218775126 0.200179 59 67 15490 YBL092W intron no 433 181 197 35.538921 286.372889 160.955905 2.206706914 0.182156 59 68 3643 Val2 ValAAC_ii 5_flank no 274 29.328008 312.425045 170.8765265 2.232682407 -0.159902 59 69 9576 RUF3 RUF3 yes 631 266 283 27.158314 291.046872 159.102593 2.201677258 -0.159837 59 70 3077 Ser3 SerCGA tRNA yes 301 287.744056 496.550789 392.1474225 2.593449365 0.223059 59 71 18104 YLR367W intron no 583 301 318 28.839109 308.548386 168.6937475 2.227098986 -0.154468 59 72 9880 RUF5-1 RUF5-1 yes 975 206 220 58.283847 313.900791 186.092319 2.269728448 0.051384 59 73 3070 Ser3 SerCGA tRNA yes 301 i9 43 30.783747 313.959972 172.3718595 2.236466367 -0.11834 59 74 5799 snR35 snR35 yes 740 181 203 30.949044 335.818756 183.3839 2.263361205 -0.268728 59 75 15745 YCR028C 3_exon no 183 161 177 29.25627 269.994739 149.6255045 2.175005628 0.05576 59 76 20305 YER003C spliced yes 40 13 27 64.119928 291.650227 177.8850775 2.250139517 0.271046 59 77 14381 MT_ORF9; ORF10 3_flank no 578 481 503 28.052902 286.785868 157.419385 2.197058211 -0.089842 59 78 13959 MT_COB bi3 no 7308 3571 3592 28.488615 313.223849 170.856232 2.232630824 -0.194926 59 79 18184 YLR448W 3_exon no 484 461 473 77.62616 291.679104 184.652632 2.266355502 0.344259 59 80 18888 YOL047C 3_exon no 163 121 133 83.551221 330.251963 206.901592 2.315763832 0.081219 59 81 11859 "rRNA(18S,5.8S,25S)" 25S yes 7956 6181 6197 27643.20979 13166.23727 20404.72353 4.309730715 0.384446 59 82 8477 snoRNA cluster 5 3_flank no 586 551 568 33.467832 285.344215 159.4060235 2.202504728 0.144914 59 83 5009 snR10 snR10 yes 445 76 93 43.858365 314.48401 179.1711875 2.253268172 -0.025422 59 84 10541 RUF8 RUF8 yes 1151 631 647 47.556675 300.124688 173.8406815 2.240151416 0.114301 59 85 14438 MT_21S 21S_rRNA3 yes 4639 781 797 109.291615 334.989727 222.140671 2.346628079 0.20682 59 86 13228 MT_COX1 ai4 no 13084 7621 7642 29.674346 334.999257 182.3368015 2.260874332 -0.280105 59 87 4857 snR8 snR8 yes 390 66 82 139.801788 377.936055 258.8689215 2.413079914 0.12039 59 88 11532 "rRNA(18S,5.8S,25S)" 25S yes 7956 4546 4561 77.871522 348.553992 213.212757 2.328813186 -0.083305 59 89 10325 RUF7 RUF7 yes 700 236 250 55.336345 308.04409 181.6902175 2.259331545 0.084739 59 90 15355 YBL026W intron no 228 81 98 31.049897 287.520407 159.285152 2.202175294 0.05262 59 91 4963 snR9 3_flank no 387 32.499795 302.043543 167.271669 2.22342239 0.009549 59 92 8211 snoRNA cluster 3; snR51 yes 743 566 582 34.066262 286.575496 160.320879 2.204990085 0.155493 59 93 15398 YBL050W intron no 216 61 78 40.31105 333.026496 186.668773 2.271071673 -0.194575 59 94 21552 copy of SH4565 no 662 32.124569 272.235976 152.1802725 2.182358357 0.188724 59 95 16571 YER133W 3_exon no 625 581 596 57.841221 326.548478 192.1948495 2.283741745 -0.051511 59 96 3025 Ser2 SerAGA_ii 3_flank no 282 30.523724 292.900208 161.711966 2.208742157 0.000641 59 97 12 Ala1 AlaAGC 5_flank no 273 30.669552 302.8329 166.751226 2.222069036 -0.055783 59 98 21345 YPR098C spliced yes 40 25 37 90.808374 314.953076 202.880725 2.307240788 0.237453 59 99 16377 YER003C 3_exon no 193 161 175 233.186573 571.07755 402.1320615 2.6043687 -0.251122 59 100 8258 snoRNA cluster4 5_flank no 638 76 93 31.881663 290.618861 161.250262 2.207500429 0.06049 59 101 2026 Lys3 LysTTT_i tRNA yes 296 53 65 36.578072 276.122397 156.3502345 2.194098537 0.284171 59 102 7110 snR63 snR63 yes 455 56 75 31.011789 298.985119 164.998454 2.217479875 -0.020652 59 103 13157 MT_COX1 intronic no 13084 6556 6568 36.659892 303.672185 170.1660385 2.230872889 0.050062 59 104 60 Ala2 AlaTGC 5_flank no 273 32.936662 293.836246 163.386454 2.213216047 0.074214 60 2 12636 MT_15S 15S yes 1848 1291 1316 26.059812 423.498572 224.779192 2.351756106 -0.91322 60 3 6204 snR40 snR40/3_flank no 297 41.520254 287.997997 164.7591255 2.216849478 0.211051 60 4 2290 Phe2 PheGAA_ii intron/tRNA no 292 i9 43 41.633252 310.896949 176.2651005 2.246166333 -0.00137 60 5 1039 Gly3 GlyGCC 5_flank no 271 32.169746 280.865868 156.517807 2.194563754 0.132732 60 6 7050 snR62 snR62 yes 300 41 60 30.450073 297.259631 163.854852 2.214459306 -0.029083 60 7 3164 Ser5 SerTGA 5_flank no 282 32.608004 278.945933 155.7769685 2.192503248 0.159491 60 8 9524 RUF3 RUF3 yes 631 6 23 30.813674 300.312214 165.562944 2.21896314 -0.035498 60 9 14842 MT_Asp tRNAAsp yes 275 151 168 28.922091 309.356017 169.139054 2.228243897 -0.15628 60 10 8098 snoRNA cluster 3; 5_flank no 743 1 15 32.823894 279.111883 155.9678885 2.193035193 0.165287 60 11 21252 YPL075W spliced yes 40 5 24 28.80732 297.295062 163.051191 2.212323975 -0.096533 60 12 14966 MT_COX 2; ORF1 5_flank/cox2 no 2427 91 115 30.638465 302.22293 166.4306975 2.221233433 -0.05313 60 13 4335 telomerase RNA telomerase yes 1501 711 732 28.606094 295.540496 162.073295 2.209711462 -0.099542 60 14 4984 snR10 5_flank no 445 30.547071 280.836718 155.6918945 2.192266003 0.070417 60 15 10659 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 181 196 40.459803 291.166766 165.8132845 2.219619322 0.178114 60 16 19832 Negative Control no 60 NA #VALUE! 34.889854 306.279063 170.5844585 2.231939461 0.008446 60 17 13278 MT_COX1 exon5a yes 13084 8371 8388 31.330447 320.360133 175.84529 2.24513074 -0.147193 60 18 17697 YKL006W intron/exon no 498 441 460 29.73523 303.127164 166.431197 2.221234737 -0.089877 60 19 1025 Gly2 GlyCCC_ii 3_flank no 272 32.1211 293.13727 162.629185 2.211198486 0.052417 60 20 5642 snR34 snR34 yes 750 131 147 76.905768 341.852157 209.3789625 2.320933043 -0.043718 60 21 5219 snR30 5_flank no 801 30.260825 262.266686 146.2637555 2.16513672 0.146887 60 22 19112 YOR312C 3_exon no 507 461 478 32.089486 301.915683 167.0025845 2.222723192 -0.002939 60 23 11896 "rRNA(18S,5.8S,25S)" 25S yes 7956 6366 6381 107.207896 444.898807 276.0533515 2.440993024 -0.427872 60 24 20386 YFL034C-B spliced yes 40 9 26 29.260736 284.540699 156.9007175 2.19562493 -0.013878 60 25 18801 YNL301C intron no 532 361 377 30.816218 275.999225 153.4077215 2.18584722 0.107185 60 26 12571 MT_15S 15S yes 1848 316 336 28.553227 293.364218 160.9587225 2.206714516 -0.092574 60 27 23 Ala1 AlaAGC tRNA yes 273 11 23 65.312708 342.806772 204.05974 2.309757329 -0.126466 60 28 6850 snR52 3_flank no 292 41.968733 313.772189 177.870461 2.250103831 -0.025478 60 29 3692 Val3 ValCAC 5_flank no 273 42.229936 399.592383 220.9111595 2.344217655 -0.669042 60 30 14616 MT_21S Sce1 no 4639 3451 3473 28.88328 311.722624 170.302952 2.231222176 -0.171714 60 31 21509 copy of SH2854 no 303 63.132707 311.590512 187.3616095 2.272680608 0.098288 60 32 3854 RNaseP RNaseP yes 569 236 250 53.634914 295.219618 174.427266 2.241614374 0.186833 60 33 16319 YDR471W intron no 484 141 157 66.251515 365.886953 216.069234 2.334592932 -0.279266 60 34 5673 snR34 snR34 yes 750 286 303 31.848021 270.235827 151.041924 2.179097509 0.186458 60 35 1732 Leu7 LeuTAA 5_flank no 284 33.92027 308.52711 171.22369 2.233563852 -0.021296 60 36 7752 snoRNA cluster1 snR76 yes 1574 556 570 46.124817 258.584146 152.3544815 2.182855233 0.521667 60 37 6693 snR49 5_flank/snR49 no 365 33.896275 329.147333 181.521804 2.258928799 -0.181474 60 38 18391 YMR116C intron/exon no 373 321 337 36.924777 327.058466 181.9916215 2.260051394 -0.155026 60 39 21105 YNL050C spliced yes 40 21 40 29.821913 310.88475 170.3533315 2.231350631 -0.133364 60 40 17565 YJL189W intron no 486 301 313 75.732517 320.815976 198.2742465 2.297266308 0.101153 60 41 14790 MT_Lys; Arg1; Gly 5_flank no 682 31 48 33.823498 297.034305 165.4289015 2.218611386 0.071337 60 42 20655 YIL018W spliced yes 40 5 22 37.826878 320.070472 178.948675 2.252728487 -0.092476 60 43 12625 MT_15S 15S yes 1848 1126 1142 43.850995 305.611193 174.731094 2.242370196 0.053057 60 44 2373 Phe4 PheGAA_iv 5_flank no 291 33.692989 280.319943 157.006466 2.195917538 0.184623 60 45 11357 "rRNA(18S,5.8S,25S)" 25S yes 7956 3671 3684 36825.04027 12997.99873 24911.5195 4.396400218 0.756851 60 46 1272 Ile2 IleTAT_i intron yes 333 i19 i35 35.631288 313.313388 174.472338 2.241726581 -0.038964 60 47 6122 snR39B 5_flank no 296 31.560879 278.188088 154.8744835 2.189979871 0.130417 60 48 1891 Lys1 LysCTT_i 5_flank no 272 58.699991 357.837627 208.268809 2.318624233 -0.277046 60 49 10487 RUF8 RUF8 yes 1151 361 380 35.451336 327.389237 181.4202865 2.258685848 -0.161568 60 50 19377 YPR043W intron no 503 121 138 41.416244 297.91336 169.664802 2.229591755 0.116244 60 51 16771 YGL103W intron no 611 101 120 33.384644 292.174539 162.7795915 2.211599954 0.098762 60 52 5639 snR34 snR34 yes 750 116 132 55.454026 324.080444 189.767235 2.27822123 -0.046002 60 53 10593 RUF8 RUF8 yes 1151 891 905 35.360716 245.109461 140.2350885 2.146856693 0.478976 60 54 622 Gln1 GlnCTG 3_flank no 272 145.161515 411.301207 278.231361 2.44440608 -0.026923 60 55 7611 snR189 snR189 yes 389 126 144 29.244546 300.090302 164.667424 2.216607692 -0.088714 60 56 4584 U3b (snR17b) 3_flank no 662 29.127574 288.825299 158.9764365 2.201332758 -0.040867 60 57 2506 Pro1 ProAGG tRNA yes 272 21 36 32.952465 301.908951 167.430708 2.223835114 0.020307 60 58 19348 YPL249C intron no 337 101 117 106.492456 342.655805 224.5741305 2.351359727 0.139395 60 59 15364 YBL027W exon/intron no 484 41 60 34.860192 328.964834 181.912513 2.259862573 -0.176518 60 60 12263 5S rRNA NTS2 no 1420 271 287 42.91434 293.154181 168.0342605 2.225397839 0.164485 60 61 17169 YHR016C 3_exon no 268 221 233 39.190504 296.223477 167.7069905 2.224551166 0.127095 60 62 20370 YER133W spliced yes 40 21 38 33.448706 309.493992 171.471349 2.234191565 -0.034826 60 63 6297 snR42 snR42 yes 551 266 282 37.664632 318.588041 178.1263365 2.250728136 -0.079898 60 64 5038 snR10 snR10 yes 445 221 237 29.694165 287.815588 158.7548765 2.200727074 -0.00627 60 65 5546 snR33 snR33 yes 383 16 32 34.709536 276.883186 155.796361 2.192557309 0.238375 60 66 18557 YMR292W 5_exon no 182 21 35 38.60542 314.899619 176.7525195 2.247365613 -0.045108 60 67 10861 "rRNA(18S,5.8S,25S)" 18S yes 7956 1191 1208 809.996841 877.069688 843.5332645 2.926102214 0.425611 60 68 12583 MT_15S 15S yes 1848 496 515 29.213635 303.015898 166.1147665 2.22040824 -0.107681 60 69 18152 YLR406C 3_exon no 449 421 436 38.919588 284.729346 161.824467 2.209044185 0.234006 60 70 20602 YHR041C spliced yes 40 21 38 32.826235 290.377485 161.60186 2.208446355 0.092508 60 71 13651 MT_ATP6 ATP6 yes 980 571 587 38.602581 304.093262 171.3479215 2.233878841 0.052453 60 72 1157 His1 HisGTG tRNA yes 272 5 22 30.727863 293.653889 162.190876 2.210026419 0.00287 60 73 11285 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3311 3324 56.387896 310.310062 183.348979 2.263278496 0.071352 60 74 669 Gln2 GlnTTG_i 3_flank no 272 72.644526 316.029288 194.336907 2.288555286 0.118714 60 75 3924 RNase MRP RNaseMRP yes 540 36 57 27.248793 306.353271 166.801032 2.222198733 -0.222921 60 76 10557 RUF8 RUF8 yes 1151 711 725 158.26944 363.489279 260.8793595 2.41643972 0.299583 60 77 22 Ala1 AlaAGC tRNA yes 273 6 18 110.287577 337.21907 223.7533235 2.349769495 0.197801 60 78 7339 snR68 5_flank no 336 34.539196 297.554068 166.046632 2.220230071 0.075687 60 79 1932 Lys1 LysCTT_i 3_flank no 272 30.767717 292.134342 161.4510295 2.208040819 0.013776 60 80 363 Arg5 ArgTCT 3_flank no 272 35.255626 296.085067 165.6703465 2.219244781 0.096419 60 81 12395 5S rRNA NTS2 no 1420 931 946 91.636186 338.224981 214.9305835 2.332298218 0.076594 60 82 2786 Pro6 ProTGG_v tRNA yes 302 22 37 36.455984 268.993794 152.724889 2.183909818 0.342861 60 83 11084 "rRNA(18S,5.8S,25S)" 18S yes 7956 2306 2322 25160.91585 11420.65651 18290.78618 4.262232373 0.50576 60 84 20232 YDR139C spliced yes 40 9 26 36.990758 328.642725 182.8167415 2.262015964 -0.168365 60 85 1839 Leu9 LeuTAG_ii 5_flank no 301 36.482837 294.635668 165.5592525 2.218953457 0.122714 60 86 7720 snoRNA cluster1 snR77 yes 1574 396 412 33.808415 275.75055 154.7794825 2.18971339 0.218454 60 87 6163 snR39B 3_flank no 296 29.147776 287.14429 158.146033 2.199058302 -0.032017 60 88 15196 MT_COX3 cox3 no 1010 361 382 32.386853 295.919163 164.153008 2.215248845 0.04363 60 89 5470 snR32 snR32 yes 388 11 28 29.808402 293.740466 161.774434 2.208909889 -0.029395 60 90 17038 YGR183C intron no 313 201 218 31.116608 298.8553 164.985954 2.217446972 -0.016329 60 91 418 Asp1 AspGTC_i 5_flank no 271 30.648402 275.969174 153.308788 2.18556705 0.098845 60 92 17493 YJL041W exon/intron no 218 41 62 28.49685 316.345016 172.420933 2.236589991 -0.21288 60 93 12335 5S rRNA NTS2 no 1420 631 650 35.50685 323.795168 179.651009 2.254429661 -0.130583 60 94 7449 snR69 3_flank no 301 44.409724 272.797555 158.6036395 2.200313149 0.368699 60 95 10876 "rRNA(18S,5.8S,25S)" 18S yes 7956 1266 1279 235.331912 493.540605 364.4362585 2.561621579 0.037512 60 96 3035 Ser2 SerAGA_ii 3_flank no 282 53.587438 288.843707 171.2155725 2.233543262 0.244252 60 97 6295 snR42 snR42 yes 551 256 275 31.983625 296.90914 164.4463825 2.216024324 0.024398 60 98 14486 MT_21S 21S_rRNA3 yes 4639 1501 1522 28.492625 339.521018 184.0068215 2.264833923 -0.34321 60 99 1966 Lys2 LysCTT_ii tRNA yes 273 31 50 52.439471 292.485444 172.4624575 2.23669457 0.205859 60 100 17992 YLR287C 5_exon no 530 21 38 36.06916 307.359139 171.7141495 2.234806083 0.013511 60 101 14427 MT_21S 21S_rRNA3 yes 4639 616 642 28.840785 374.354197 201.597491 2.304485123 -0.566403 60 102 12714 MT_ORF 8 ORF8/3_flank no 491 376 402 30.791056 330.530862 180.660959 2.256864311 -0.231623 60 103 16471 YER102W intron no 460 61 77 57.196648 353.264964 205.230806 2.312242551 -0.254351 60 104 2757 Pro5 ProTGG_iv 3_flank no 303 36.630764 290.933602 163.782183 2.214266655 0.155638 61 2 20743 YJL205C-A spliced yes 40 1 17 35.776056 356.521238 196.148647 2.292585317 -0.398565 61 3 13928 MT_COB bi3 no 7308 3106 3127 31.970084 346.49422 189.232152 2.276994928 -0.332627 61 4 530 Cys1 CysGCA 5_flank no 272 33.065612 328.54236 180.803986 2.257208001 -0.187201 61 5 20326 YER056C-A spliced yes 40 21 37 76.105337 328.560407 202.332872 2.306066446 0.046323 61 6 18151 YLR406C 3_exon no 449 401 417 40.309244 304.448922 172.379083 2.236484566 0.053137 61 7 12989 MT_COX1 ai2 no 13084 4036 4055 28.794559 288.381399 158.587979 2.200270265 -0.056685 61 8 16560 YER133W intron no 625 361 378 28.919428 303.096451 166.0079395 2.220128859 -0.11874 61 9 21535 copy of SH3941 no 540 28.958542 306.405296 167.681919 2.224486236 -0.137319 61 10 21812 copy of SH15492 no 433 54.553075 335.847474 195.2002745 2.290480424 -0.143187 61 11 5852 snR35 snR35 yes 740 446 462 44.484269 326.714241 185.599255 2.268576229 -0.126696 61 12 4875 snR8 snR8 yes 390 156 168 44.289046 309.617317 176.9531815 2.247858375 0.01875 61 13 19555 CBP1 2.2 CBP1 2.2 yes 401 201 218 34.40937 301.700194 168.054782 2.225450875 0.03993 61 14 14128 MT_COB exon5/intron no 7308 6106 6122 51.025166 334.530959 192.7780625 2.285057611 -0.152859 61 15 9266 RUF1 5_flank no 750 44.380348 331.46843 187.924389 2.273983147 -0.165406 61 16 15604 YBR119W exon/intron no 189 41 55 38.842243 301.852808 170.3475255 2.231335829 0.07368 61 17 1378 Leu1 LeuCAA_i 5_flank no 315 30.323889 303.292697 166.808293 2.222217638 -0.070412 61 18 12148 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7626 7639 114.197906 429.477403 271.8376545 2.434309614 -0.305585 61 19 6575 snR47 5_flank no 299 34.06318 284.088059 159.0756195 2.201603623 0.171449 61 20 6846 snR52 3_flank no 292 36.259159 322.669132 179.4641455 2.253977695 -0.118935 61 21 15809 YDL061C intron no 509 321 342 32.07826 305.943665 169.0109625 2.227914875 -0.027705 61 22 21173 YNL312W spliced yes 40 17 33 98.552167 373.51301 236.0325885 2.372971969 -0.103771 61 23 17751 YKL157W intron no 483 161 179 31.375044 282.719088 157.047066 2.196029827 0.094504 61 24 1038 Gly3 GlyGCC 5_flank no 271 26.983939 301.152103 164.068021 2.21502394 -0.215295 61 25 18291 YML073C 5_exon no 515 21 37 48.031062 340.534447 194.2827545 2.288434252 -0.216847 61 26 4512 U3b (snR17b) U3b yes 662 116 133 30.212177 297.412544 163.8123605 2.214346668 -0.03822 61 27 523 Cys1 CysGCA 5_flank no 272 39.700687 294.942865 167.321776 2.223552466 0.140381 61 28 6188 snR40 snR40 yes 297 1 19 394.446908 788.72518 591.586044 2.77201792 -0.251621 61 29 15612 YBR181C 5_exon no 452 21 37 51.832308 378.118225 214.9752665 2.332388496 -0.461408 61 30 15880 YDL082W intron no 465 141 158 29.803055 310.668755 170.235905 2.231051164 -0.132745 61 31 19579 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 281 303 29.173277 299.466804 164.3200405 2.215690533 -0.087432 61 32 9794 RUF4 RUF4 yes 988 746 763 27.476548 281.050277 154.2634125 2.188262934 -0.095195 61 33 12781 MT_COX1 ai1 no 13084 916 933 43.83342 323.028863 183.4311415 2.263473069 -0.099038 61 34 14465 MT_21S 21S_rRNA3 yes 4639 1186 1206 240.113025 523.133892 381.6234585 2.581635063 -0.054999 61 35 6124 snR39B 5_flank no 296 31.865943 300.463638 166.1647905 2.220539004 -0.001362 61 36 5458 snR32 5_flank no 388 31.865954 273.43703 152.651492 2.183701053 0.171651 61 37 6301 snR42 snR42 yes 551 286 303 33.886162 338.626553 186.2563575 2.270111105 -0.259986 61 38 13351 MT_COX1 intronic no 13084 9466 9490 33.890498 302.440052 168.165275 2.225736322 0.027585 61 39 8782 LSR1 / U2 RNA U2 yes 1375 551 568 46.110754 347.993574 197.052164 2.294581209 -0.284442 61 40 612 Gln1 GlnCTG 3_flank no 272 33.909132 305.933833 169.9214825 2.230248288 -0.000572 61 41 5764 snR35 snR35 yes 740 6 23 33.894322 279.607066 156.750694 2.195209472 0.195533 61 42 15260 MT_9S 5_flank/9S no 701 76 102 29.806791 308.106582 168.9566865 2.227775384 -0.117366 61 43 15815 YDL061C intron/exon no 509 441 460 29.756247 312.997279 171.376763 2.233951936 -0.148134 61 44 21430 Tyr1_2 spliced yes 40 13 30 33.731545 297.932691 165.832118 2.219668648 0.062747 61 45 11618 "rRNA(18S,5.8S,25S)" 25S yes 7956 4976 4991 43172.38079 18235.94404 30704.16241 4.487197255 0.389454 61 46 19061 YOR234C 3_exon no 627 601 618 35.606387 286.539725 161.073056 2.207022899 0.181502 61 47 4934 snR9 snR9 yes 387 76 92 2526.831333 1699.076569 2112.953951 3.324890032 0.830209 61 48 20513 YGR029W spliced yes 40 13 25 29.467688 293.553428 161.510558 2.208200918 -0.044451 61 49 379 Asn1 AsnGTT 5_flank no 274 37.42765 314.913357 176.1705035 2.245933196 -0.048059 61 50 12073 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7251 7268 35.39566 308.444993 171.9203265 2.235327227 -0.003009 61 51 14322 MT_VAR1 VAR1 yes 1467 1036 1064 29.391787 343.825727 186.608757 2.27093202 -0.348337 61 52 2852 Pro7 ProTGG_vi intron/tRNA no 303 i30 48 109.054247 319.610248 214.3322475 2.331087518 0.31074 61 53 1925 Lys1 LysCTT_i 3_flank no 272 31.342251 307.237667 169.289959 2.2286312 -0.059714 61 54 2636 Pro3 ProTGG_ii 3_flank no 303 31.273464 296.738659 164.0060615 2.214859899 0.002009 61 55 7596 snR189 snR189 yes 389 51 67 43.091488 258.353347 150.7224175 2.178177851 0.516409 61 56 6198 snR40 snR40 yes 297 51 65 48.872169 281.082728 164.9774485 2.217424583 0.297986 61 57 9535 RUF3 RUF3 yes 631 61 80 30.91976 305.837503 168.3786315 2.226286975 -0.065476 61 58 4615 snR3 5_flank/snR3 no 395 32.826047 323.306981 178.066514 2.250582257 -0.150513 61 59 10972 "rRNA(18S,5.8S,25S)" 18S yes 7956 1746 1763 12667.761 6777.842186 9722.801592 3.987791423 0.536252 61 60 18799 YNL301C intron no 532 321 340 31.01706 303.714345 167.3657025 2.223666465 -0.049369 61 61 149 Arg1 ArgACG_i 3_flank no 273 31.203042 334.244025 182.7235335 2.261794485 -0.253728 61 62 18920 YOL121C intron no 490 61 82 27.411128 312.236975 169.8240515 2.229999198 -0.239024 61 63 782 Glu1 GluCTC 5_flank no 272 29.541788 366.757144 198.149466 2.296992906 -0.505791 61 64 15788 YDL029W intron no 223 121 140 29.59574 271.140146 150.367943 2.177155259 0.068048 61 65 15223 MT_COX3 cox3 no 1010 766 785 29.556596 305.26505 167.410823 2.223783531 -0.109109 61 66 20319 YER044C-A spliced yes 40 17 36 31.442796 307.635417 169.5391065 2.22926989 -0.058752 61 67 19645 SIR1 2.2 SIR1 2.2 yes 401 21 37 45.256384 294.90311 170.079747 2.230652601 0.155383 61 68 9276 RUF1 5_flank no 750 47.017818 341.905185 194.4615015 2.288833635 -0.233064 61 69 6666 snR48 3_flank no 313 32.957376 289.224819 161.0910975 2.20707154 0.103994 61 70 10697 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 371 389 46.655647 329.121365 187.888506 2.273900213 -0.134369 61 71 15659 YBR189W intron no 513 321 337 30.824646 300.410756 165.617701 2.219106752 -0.03573 61 72 4162 SRP 3_flank no 875 36.711882 295.594541 166.1532115 2.22050874 0.117276 61 73 18277 YML056C intron no 508 421 440 46.668061 302.083557 174.375809 2.241486235 0.09377 61 74 7320 snR66 3_flank no 286 28.079179 300.957591 164.518385 2.216214438 -0.152616 61 75 13983 MT_COB intronic no 7308 3931 3943 35.262773 260.428765 147.845769 2.169808901 0.367689 61 76 6107 snR37 3_flank no 586 59.94208 293.794424 176.868252 2.247649884 0.231068 61 77 19766 Negative Control no 60 NA #VALUE! 39.106428 273.087133 156.0967805 2.193393946 0.339162 61 78 20300 YEL012W spliced yes 40 17 34 32.348137 317.031534 174.6898355 2.242267636 -0.108145 61 79 9076 snR14 / U4 RNA 5_flank/U4 no 360 94.135209 340.292361 217.213785 2.336887383 0.078651 61 80 5995 snR36 3_flank no 555 32.956294 272.784135 152.8702145 2.184322875 0.211712 61 81 10254 RUF6 3_flank no 1251 28.897841 308.706759 168.8023 2.22737836 -0.153288 61 82 7140 snR63 snR63 yes 455 206 222 54.381792 319.98575 187.183771 2.272268192 -0.01888 61 83 14239 MT_Ser 5_flank no 290 61 89 35.165961 269.016787 152.091374 2.182104583 0.305083 61 84 14343 MT_VAR1 VAR1/3_flank no 1467 1351 1377 28.652543 319.201578 173.9270605 2.240367157 -0.223742 61 85 4193 telomerase RNA telomerase yes 1501 1 19 77.204247 356.864462 217.0343545 2.336528484 -0.143212 61 86 9180 snR7 U5 RNA U5 yes 415 171 188 32.961613 276.170049 154.565831 2.189113493 0.189167 61 87 4881 snR8 snR8/3_flank no 390 29.336896 286.765659 158.0512775 2.198798011 -0.020211 61 88 12765 MT_COX1 ai1 no 13084 676 696 28.714297 326.947169 177.830733 2.250006819 -0.265637 61 89 18058 YLR333C intron no 523 441 458 49.18565 302.4833 175.834475 2.245104029 0.1014 61 90 1470 Leu2 LeuCAA_ii 3_flank no 314 32.218412 286.778749 159.4985805 2.202756822 0.095952 61 91 15933 YDL115C 5_exon no 189 21 36 75.286013 359.177302 217.2316575 2.336923116 -0.171955 61 92 2557 Pro2 ProTGG_i tRNA/intron no 303 22 37 34.857528 292.858778 163.858153 2.214468055 0.118793 61 93 9394 RUF1 RUF1/3_flank no 750 442.526457 662.210493 552.368475 2.742228884 0.18357 61 94 13393 MT_COX1 intronic no 13084 10096 10124 58.54018 378.173362 218.356771 2.339166663 -0.414502 61 95 3639 Val2 ValAAC_ii 5_flank no 274 27.941613 311.055799 169.498706 2.229166387 -0.204194 61 96 2830 Pro7 ProTGG_vi 5_flank no 303 33.275711 279.013935 156.144823 2.19352759 0.180208 61 97 7240 snR65 5_flank no 300 35.135623 270.591706 152.8636645 2.184304266 0.293434 61 98 14133 MT_COB intronic no 7308 6181 6209 26.317835 312.42126 169.3695475 2.228835327 -0.303052 61 99 16730 YGL076C 5_exon no 559 21 38 272.984364 436.371052 354.677708 2.549833893 0.417129 61 100 9647 RUF4 RUF4 yes 988 11 23 55.74206 305.780193 180.7611265 2.257105039 0.106001 61 101 11215 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2961 2977 56.122869 358.717652 207.4202605 2.316851175 -0.299844 61 102 15415 YBL059W 5_exon no 169 21 38 32.431611 351.506012 191.9688115 2.283230676 -0.368292 61 103 8896 LSR1 / U2 RNA U2 yes 1375 1121 1138 32.620857 272.21735 152.4191035 2.183039403 0.204858 61 104 20125 YDL079C spliced yes 40 21 40 30.914206 330.158634 180.53642 2.256564826 -0.227186 62 2 16017 YDL189W 5_exon no 199 1 15 36.548346 367.696088 202.122217 2.305614053 -0.48018 62 3 13068 MT_COX1 intronic/exon3 no 13084 5221 5237 33.754626 285.271661 159.5131435 2.202796474 0.154293 62 4 12005 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6911 6934 33.924738 325.438868 179.681803 2.254504097 -0.153124 62 5 14040 MT_COB bi4 no 7308 4786 4810 34.155835 332.254977 183.205406 2.262938285 -0.206188 62 6 12273 5S rRNA NTS2 no 1420 321 339 30.526246 292.449634 161.48794 2.208140095 0.003562 62 7 6104 snR37 3_flank no 586 32.698652 244.450624 138.574638 2.141683753 0.36095 62 8 4109 SRP SRP yes 875 436 448 7443.782235 8154.613373 7799.197804 3.892049935 -0.419961 62 9 10376 RUF7 RUF7/3_flank no 700 56.663498 305.380574 181.022036 2.257731445 0.114252 62 10 18676 YNL112W intron no 1102 701 715 54.58154 308.545768 181.563654 2.259028914 0.076451 62 11 7270 snR65 3_flank no 300 30.75949 277.016511 153.8880005 2.187204757 0.099423 62 12 17188 YHR021C intron no 650 341 358 35.496492 306.879562 171.188027 2.233473387 0.010743 62 13 11420 "rRNA(18S,5.8S,25S)" 25S yes 7956 3986 4004 9317.671295 16213.29173 12765.48151 4.106037201 -1.290955 62 14 3748 Val4 ValTAC 5_flank no 274 34.44319 319.770046 177.106618 2.24823479 -0.103417 62 15 5405 snR31 snR31 yes 425 91 103 36.574979 270.428924 153.5019515 2.186113901 0.335626 62 16 2943 Ser1 SerAGA_i 5_flank no 283 71.763284 365.600827 218.6820555 2.339813147 -0.238506 62 17 10995 "rRNA(18S,5.8S,25S)" 18S yes 7956 1861 1878 50535.92075 27284.37632 38910.14853 4.590062889 -0.085957 62 18 8440 snoRNA cluster 5 snR128 yes 586 366 382 87.335829 357.74637 222.5410995 2.347410229 -0.080524 62 19 14473 MT_21S 21S_rRNA3 yes 4639 1306 1328 29.90906 317.672258 173.790659 2.24002643 -0.170082 62 20 2396 Phe4 PheGAA_iv tRNA/intron no 291 31 i11 29.96714 292.284859 161.1259995 2.207165624 -0.014703 62 21 10072 RUF6 RUF6 yes 1251 206 223 29.82556 282.246079 156.0358195 2.193224306 0.026611 62 22 5630 snR34 snR34 yes 750 71 90 29.513131 312.972786 171.2429585 2.233612722 -0.156557 62 23 4088 SRP SRP yes 875 331 343 52.928823 322.23839 187.5836065 2.273194881 -0.045076 62 24 19215 YPL081W intron no 601 461 483 30.615265 284.126992 157.3711285 2.196925059 0.058371 62 25 10041 RUF6 RUF6 yes 1251 51 67 65.092363 363.757199 214.424781 2.331274975 -0.273851 62 26 11172 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2746 2763 60.70731 314.674452 187.690881 2.273443173 0.059404 62 27 14903 MT_Ile 3_flank no 276 196 224 28.028224 351.124951 189.5765875 2.277784701 -0.422245 62 28 17161 YHR016C intron no 268 61 77 37.738561 276.478245 157.108403 2.196199414 0.293921 62 29 9633 RUF4 5_flank no 988 118.959701 429.038167 273.998934 2.437748873 -0.272258 62 30 15769 YCR097W intron no 154 61 78 29.785453 294.247903 162.016678 2.209559723 -0.033377 62 31 12325 5S rRNA NTS2 no 1420 581 598 29.179429 288.78351 158.9814695 2.201346507 -0.03791 62 32 9616 RUF3 3_flank no 631 27.487844 329.74915 178.618497 2.251926431 -0.32693 62 33 8493 snR19 / U1 RNA 5_flank no 868 39.790962 276.895221 158.3430915 2.19959912 0.312124 62 34 10045 RUF6 RUF6 yes 1251 71 90 29.792017 298.65224 164.2221285 2.215431677 -0.060502 62 35 21577 copy of SH5623 no 750 31.83953 266.640603 149.2400665 2.173885434 0.203878 62 36 3354 Thr3 ThrTGT_i 3_flank no 272 39.941437 250.825494 145.3834655 2.162515017 0.558056 62 37 19581 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 321 338 33.844674 355.243241 194.5439575 2.289017746 -0.393948 62 38 5563 snR33 snR33 yes 383 101 118 31.831892 305.671493 168.7516925 2.227248137 -0.034118 62 39 5384 snR31 5_flank/snR31 no 425 44.051897 355.37424 199.7130685 2.300406484 -0.351063 62 40 9191 snR7 U5 RNA 3_flank no 415 27.834211 283.167976 155.5010935 2.191733447 -0.085097 62 41 13150 MT_COX1 intronic no 13084 6451 6463 40.01801 297.086004 168.552007 2.226733928 0.120879 62 42 6523 snR46 snR46 yes 397 106 125 29.836444 303.6812 166.758822 2.222088819 -0.089691 62 43 13787 MT_COB intronic no 7308 991 1010 58.250755 370.731243 214.490999 2.331409072 -0.367564 62 44 12329 5S rRNA NTS2 no 1420 601 617 39.812792 260.001576 149.907184 2.175822446 0.467925 62 45 18666 YNL112W intron no 1102 501 518 35.667366 304.865219 170.2662925 2.231128679 0.029007 62 46 3362 Thr3 ThrTGT_i 3_flank no 272 49.693184 334.71837 192.205777 2.283766437 -0.162158 62 47 10581 RUF8 RUF8 yes 1151 831 848 32.489674 340.283518 186.386596 2.270414677 -0.281253 62 48 6075 snR37 snR37 yes 586 291 308 71.75108 295.709966 183.730523 2.264181311 0.277418 62 49 14811 MT_Lys; Arg1; Gly intergenic/tRNAArg1 no 682 346 363 29.423518 298.373821 163.8986695 2.214575428 -0.071781 62 50 14767 MT_ORF11; Leu; Gln ORF11 yes 716 391 416 29.419621 340.592371 185.005996 2.267185804 -0.324595 62 51 5545 snR33 snR33 yes 383 11 26 51.484575 305.560877 178.522726 2.25169351 0.085897 62 52 584 Gln1 GlnCTG 5_flank no 272 29.403331 297.917749 163.66054 2.21394398 -0.069682 62 53 8257 snoRNA cluster4 5_flank no 638 71 90 27.364714 277.144472 152.254593 2.182570403 -0.086234 62 54 20769 YKL002W spliced yes 40 9 29 39.217492 343.073024 191.145258 2.281363528 -0.280016 62 55 15404 YBL050W 3_exon no 216 181 195 39.049949 252.04009 145.5450195 2.162997349 0.534496 62 56 4633 snR3 snR3 yes 395 81 97 38.867364 303.61233 171.239847 2.233604831 0.0575 62 57 6485 snR46 5_flank no 397 34.781807 304.8756 169.8287035 2.230011094 0.018512 62 58 10042 RUF6 RUF6 yes 1251 56 72 32.759357 304.462875 168.611116 2.226886203 -0.002944 62 59 6258 snR42 snR42 yes 551 71 91 38.691962 298.93891 168.815436 2.227412155 0.10043 62 60 20431 YGL033W spliced yes 40 21 40 30.950994 328.454033 179.7025135 2.254554152 -0.213901 62 61 8671 LSR1 / U2 RNA 5_flank/U2 no 1375 43.023637 290.659564 166.8416005 2.222304347 0.188595 62 62 21298 YPL198W spliced yes 40 13 30 31.288322 301.428399 166.3583605 2.221044632 -0.026366 62 63 17153 YHR012W intron no 219 121 140 31.408746 361.937332 196.673039 2.293744829 -0.452929 62 64 5191 snR13 snR13/3_flank no 324 31.449509 282.618685 157.034097 2.195993962 0.097633 62 65 6023 snR37 snR37 yes 586 31 53 29.413346 311.817847 170.6155965 2.232018729 -0.153287 62 66 1010 Gly2 GlyCCC_ii tRNA yes 272 41 53 47.299655 324.809185 186.05442 2.269639992 -0.096186 62 67 19930 YBL018C spliced yes 40 21 38 31.197218 299.812064 165.504641 2.218810177 -0.019512 62 68 2826 Pro7 ProTGG_vi 5_flank no 303 35.053215 304.410638 169.7319265 2.229763541 0.025503 62 69 10782 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 796 814 31.021157 303.149857 167.085507 2.222938781 -0.045806 62 70 734 Gln4 GlnTTG_iii 5_flank no 272 29.012209 299.469679 164.240944 2.215481433 -0.095226 62 71 17606 YJL205C intron no 243 141 157 48.780332 323.958368 186.36935 2.270374491 -0.081692 62 72 9839 RUF5-1 RUF5-1 yes 975 1 22 27.066073 312.664536 169.8653045 2.230104682 -0.260529 62 73 3628 Val1 ValAAC_i 3_flank no 274 48.953816 310.48356 179.718688 2.254593239 0.031329 62 74 19071 YOR293W intron no 537 181 198 35.191447 321.286397 178.238922 2.251002547 -0.109664 62 75 13261 MT_COX1 ai4 no 13084 8116 8140 27.416386 323.239937 175.3281615 2.243851679 -0.292941 62 76 7356 snR68 snR68 yes 336 1 20 33.68313 300.083335 166.8832325 2.222412703 0.044377 62 77 7225 snR65 5_flank no 300 51.405136 320.606274 186.005705 2.269526265 -0.0406 62 78 8279 snoRNA cluster4 snR67/intergenic no 638 181 202 30.229803 302.41071 166.3202565 2.220945146 -0.068295 62 79 13696 MT_ORF 5 3_flank no 331 286 298 38.832152 254.453826 146.642989 2.166261304 0.510901 62 80 3338 Thr3 ThrTGT_i tRNA yes 272 36 52 113.071049 353.422855 233.246952 2.367815977 0.110219 62 81 2684 Pro4 ProTGG_iii tRNA yes 302 57 71 71.22798 308.392869 189.8104245 2.27832006 0.170782 62 82 19888 Positive Control 4 no 21 NA #VALUE! 91.172903 329.888682 210.5307925 2.323315625 0.130963 62 83 4257 telomerase RNA telomerase yes 1501 321 338 33.081403 307.916913 170.499158 2.231722239 -0.026772 62 84 21038 YMR133W spliced yes 40 1 19 30.82152 318.672625 174.7470725 2.242409909 -0.14449 62 85 18759 YNL162W intron no 612 501 523 30.52935 300.565963 165.5476565 2.218923037 -0.046733 62 86 7899 snoRNA cluster1 intergenic no 1574 1291 1307 36.244671 294.841621 165.543146 2.218911204 0.118275 62 87 2503 Pro1 ProAGG tRNA yes 272 6 22 531.901498 702.943972 617.422735 2.790582617 0.295179 62 88 16603 YFL034C 5_exon no 214 1 15 85.254688 306.19642 195.725554 2.291647531 0.270663 62 89 7927 snoRNA cluster1 snR72 yes 1574 1431 1448 36.054772 310.584552 173.319662 2.238847833 -0.012797 62 90 5947 snR36 snR36 yes 555 191 217 29.646611 315.641102 172.6438565 2.237151129 -0.167476 62 91 1863 Leu9 LeuTAG_ii intron/tRNA no 301 i18 e23 30.944596 270.445048 150.694822 2.17809833 0.140715 62 92 9990 RUF5-1 RUF5-1 yes 975 756 772 32.274415 265.856436 149.0654255 2.173376924 0.228879 62 93 11498 "rRNA(18S,5.8S,25S)" 25S yes 7956 4376 4391 72.700796 332.646609 202.6737025 2.306797401 -0.005594 62 94 15496 YBL092W intron no 433 301 317 115.079431 400.886655 257.983043 2.411591161 -0.151794 62 95 713 Gln3 GlnTTG_ii 3_flank no 272 29.601158 292.918158 161.259658 2.207525734 -0.034545 62 96 902 Glu3 GluTTC_ii tRNA yes 272 21 37 73.198104 325.869719 199.5339115 2.300016716 0.047098 62 97 11634 "rRNA(18S,5.8S,25S)" 25S yes 7956 5056 5073 57.987315 321.896356 189.9418355 2.27862063 -0.01433 62 98 2033 Lys3 LysTTT_i 3_flank no 296 34.931616 285.588186 160.259901 2.20482487 0.181801 62 99 8530 snR19 / U1 RNA U1 yes 868 146 160 44.06633 282.265219 163.1657745 2.212629067 0.272664 62 100 10410 RUF8 5_flank no 1151 35.347505 348.501095 191.9243 2.283129965 -0.336443 62 101 14312 MT_VAR1 VAR1 yes 1467 886 908 28.371629 306.030745 167.201187 2.223239356 -0.158776 62 102 8935 snR17a / U3a 5_flank no 690 31.333141 299.080609 165.206875 2.218028116 -0.010475 62 103 1312 Ile3 IleTAT_ii 5_flank no 333 28.794476 304.462142 166.628309 2.221748787 -0.131539 62 104 16525 YER131W intron no 461 121 138 30.832505 258.068633 144.450569 2.159719257 0.197454 63 2 17706 YKL081W intron no 426 121 138 28.474516 349.668429 189.0714725 2.276626007 -0.403109 63 3 13167 MT_COX1 intronic no 13084 6706 6721 31.459174 283.060559 157.2598665 2.196617903 0.095078 63 4 14358 MT_ORF9; ORF10 ORF9 yes 578 136 157 29.772059 322.253908 176.0129835 2.245544704 -0.201241 63 5 14330 MT_VAR1 VAR1 yes 1467 1156 1177 31.951312 333.645019 182.7981655 2.261971833 -0.239483 63 6 19186 YPL079W intron no 521 401 420 32.261596 307.063242 169.662419 2.229585655 -0.030302 63 7 20706 YJL024C spliced yes 40 5 22 28.660562 258.700943 143.6807525 2.157398594 0.072477 63 8 1772 Leu7 LeuTAA 3_flank no 284 32.77207 328.54128 180.656675 2.256854013 -0.190885 63 9 14292 MT_VAR1 VAR1 yes 1467 586 607 26.978958 296.706417 161.8426875 2.209093082 -0.195778 63 10 2626 Pro3 ProTGG_ii tRNA yes 303 51 65 40.726202 291.425282 166.075742 2.220306201 0.176233 63 11 5260 snR30 snR30 yes 801 151 163 53.401614 311.229135 182.3153745 2.260823294 0.04755 63 12 7188 snR64 snR64 yes 301 6 22 7407.544241 8835.593411 8121.568826 3.909639929 -0.559599 63 13 9216 snR6 / U6 RNA 5_flank no 312 47.163327 298.583008 172.8731675 2.23772759 0.127245 63 14 13102 MT_COX1 ai3 no 13084 5731 5750 30.593453 279.419717 155.006585 2.190350148 0.07951 63 15 12991 MT_COX1 ai2 no 13084 4066 4083 36.6385 326.204364 181.421432 2.258688591 -0.14843 63 16 5330 snR30 snR30 yes 801 501 517 42.927742 294.57346 168.750601 2.227245328 0.151019 63 17 13430 MT_COX1 intronic no 13084 10651 10677 31.377432 274.932236 153.154834 2.185130709 0.140385 63 18 18405 YMR125W intron no 422 241 260 31.688541 276.582285 154.135413 2.18790243 0.145291 63 19 21152 YNL265C spliced yes 40 5 22 29.846947 293.369686 161.6083165 2.208463706 -0.02572 63 20 20925 YLR367W spliced yes 40 13 30 33.899387 303.105247 168.502317 2.226605877 0.022264 63 21 17216 YHR041C 5_exon no 201 1 13 39.737125 300.210893 169.974009 2.230382518 0.091 63 22 11573 "rRNA(18S,5.8S,25S)" 25S yes 7956 4751 4764 53.302196 305.464198 179.383197 2.25378176 0.095396 63 23 12385 5S rRNA NTS2 no 1420 881 898 36.735704 309.580623 173.1581635 2.238442971 -0.002042 63 24 19139 YPL075W intron no 851 301 317 28.464883 314.864187 171.664535 2.234680581 -0.205414 63 25 20821 YKR057W spliced yes 40 5 21 37.699328 302.346553 170.0229405 2.230507523 0.066387 63 26 8814 LSR1 / U2 RNA U2 yes 1375 711 723 62.336951 334.058811 198.197881 2.297099007 -0.082265 63 27 16081 YDR025W intron no 439 161 180 29.833545 281.634644 155.7340945 2.192383702 0.029915 63 28 9234 snR6 / U6 RNA U6 yes 312 41 58 190.99056 484.575649 337.7831045 2.528637923 -0.11948 63 29 16080 YDR025W intron no 439 141 160 32.293482 332.502139 182.3978105 2.261019621 -0.226592 63 30 2941 Ser1 SerAGA_i 5_flank no 283 28.823818 340.453868 184.638843 2.26632307 -0.336194 63 31 21803 copy of SH15073 no 2427 27.228119 296.617948 161.9230335 2.209308631 -0.181097 63 32 17670 YKL006C intron no 241 141 153 31.520036 278.785205 155.1526205 2.190759115 0.125117 63 33 20464 YGL183C spliced yes 40 13 25 35.764452 298.454429 167.1094405 2.223000985 0.082654 63 34 11212 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2946 2961 85.638959 349.30313 217.4710445 2.33740144 -0.036973 63 35 11148 "rRNA(18S,5.8S,25S)" 18S yes 7956 2626 2643 40911.74669 29783.54871 35347.6477 4.548360518 -0.49048 63 36 11630 "rRNA(18S,5.8S,25S)" 25S yes 7956 5036 5052 29.747756 258.911032 144.329394 2.159354788 0.137465 63 37 18029 YLR316C 5_exon no 168 21 40 32.750496 313.006623 172.8785595 2.237741135 -0.071451 63 38 16264 YDR424C intron/exon no 196 141 158 31.746086 319.991136 175.868611 2.245188334 -0.138888 63 39 9119 snR14 / U4 RNA 3_flank no 360 31.778953 352.684287 192.23162 2.283824826 -0.379499 63 40 12658 MT_15S 15S yes 1848 1621 1649 27.775829 338.579296 183.1775625 2.262872276 -0.364702 63 41 1857 Leu9 LeuTAG_ii tRNA/intron no 301 25 i3 81.740967 359.7355 220.7382335 2.343877563 -0.131155 63 42 3631 Val1 ValAAC_i 3_flank no 274 39.941368 308.161965 174.0516665 2.240678186 0.01843 63 43 15057 MT_COX 2; ORF1 ORF1exon1 yes 2427 1456 1477 27.737943 282.765062 155.2515025 2.191035812 -0.088584 63 44 15411 YBL059C intron/exon no 185 121 137 33.709894 282.798699 158.2542965 2.19935551 0.168938 63 45 19292 YPL175W intron no 200 101 118 33.608307 270.598437 152.103372 2.182138842 0.246981 63 46 14848 MT_Asp 3_flank no 275 241 267 31.509649 337.250361 184.380005 2.265713822 -0.271808 63 47 10296 RUF7 RUF7 yes 700 91 113 29.448527 301.181071 165.314799 2.218311733 -0.088136 63 48 7456 snR69 3_flank no 301 34.419676 262.458047 148.4388615 2.171547615 0.328129 63 49 19354 YPL249C intron no 337 221 237 31.424997 270.596325 151.010661 2.179007609 0.163906 63 50 19574 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 181 198 29.447831 286.326495 157.887163 2.198346821 -0.012306 63 51 10828 "rRNA(18S,5.8S,25S)" 18S yes 7956 1026 1044 781.200358 1446.824254 1114.012306 3.046889988 -0.442024 63 52 7746 snoRNA cluster1 intergenic no 1574 526 545 31.440466 277.496231 154.4683485 2.188839503 0.13101 63 53 15500 YBL092W intron/exon no 433 381 396 47.390556 269.183518 158.287037 2.19944535 0.412251 63 54 8610 snR19 / U1 RNA U1 yes 868 546 562 33.23214 295.123766 164.177953 2.215314837 0.07549 63 55 16171 YDR139C 3_exon no 173 141 157 33.058676 282.693087 157.8758815 2.198315788 0.149256 63 56 13829 MT_COB bi2 no 7308 1621 1645 26.985034 340.699945 183.8424895 2.264445892 -0.406359 63 57 3000 Ser2 SerAGA_ii 5_flank no 282 30.780864 312.716049 171.7484565 2.234892843 -0.111128 63 58 18912 YOL120C intron no 547 441 456 38.549408 287.714601 163.1320045 2.212539173 0.204273 63 59 9105 snR14 / U4 RNA U4 yes 360 141 158 32.698183 316.427354 174.5627685 2.241951621 -0.098975 63 60 12923 MT_COX1 ai2 no 13084 3046 3058 38.699423 289.876549 164.287986 2.215605806 0.186461 63 61 18510 YMR201C 5_exon no 184 1 16 39.862037 295.097909 167.479973 2.223962882 0.139283 63 62 5620 snR34 snR34 yes 750 21 37 43.018995 277.841489 160.430242 2.205286239 0.314604 63 63 15725 YBR255C intron/exon no 194 141 158 31.211457 334.155234 182.6833455 2.261698956 -0.25296 63 64 21538 copy of SH3944 no 540 29.260531 275.961402 152.6109665 2.183585743 0.026879 63 65 4174 telomerase RNA 5_flank no 1501 31.224544 290.457598 160.841071 2.206396956 0.039764 63 66 13492 MT_COX1 intronic/exon5g no 13084 11581 11603 33.15575 304.338258 168.747004 2.227236071 0.003047 63 67 9279 RUF1 5_flank no 750 60.997028 310.270104 185.633566 2.268656508 0.096743 63 68 470 Asp2 AspGTC_ii 5_flank no 272 31.093635 305.903875 168.498755 2.226596696 -0.06002 63 69 20416 YGL030W spliced yes 40 9 23 54.957969 287.662282 171.3101255 2.233783033 0.261274 63 70 2304 Phe2 PheGAA_ii 3_flank no 292 30.137313 282.777079 156.457196 2.194395543 0.040265 63 71 13665 MT_ATP6 ATP6 yes 980 781 798 29.193138 295.548427 162.3707825 2.210507884 -0.068015 63 72 2296 Phe2 PheGAA_ii tRNA yes 292 57 72 41.198019 292.928096 167.0630575 2.222880425 0.162914 63 73 17912 YLR061W intron no 489 301 320 29.32765 286.40498 157.866315 2.198289472 -0.019025 63 74 8837 LSR1 / U2 RNA U2 yes 1375 826 842 40.448754 327.657154 184.052954 2.264942792 -0.149504 63 75 13684 MT_ORF 5 ORF5 yes 331 106 132 29.565711 307.658921 168.612316 2.226889294 -0.123169 63 76 16401 YER056C intron no 497 81 97 35.814154 301.416099 168.6151265 2.226896533 0.058826 63 77 3197 Ser5 SerTGA 3_flank no 282 31.996679 290.862033 161.429356 2.207982514 0.06271 63 78 1447 Leu2 LeuCAA_ii tRNA yes 314 6 19 45673.65815 14593.8347 30133.74643 4.479053129 0.828306 63 79 656 Gln2 GlnTTG_i tRNA/3_flank no 272 32.536802 288.860718 160.69876 2.206012526 0.092902 63 80 9120 snR14 / U4 RNA 3_flank no 360 31.751035 323.665025 177.70803 2.249707052 -0.167036 63 81 20657 YIL018W spliced yes 40 13 30 39.325186 304.981431 172.1533085 2.235915374 0.045998 63 82 5617 snR34 snR34 yes 750 6 22 35.2469 273.018157 154.1325285 2.187894303 0.2803 63 83 7504 snR71 3_flank no 290 33.153326 309.136097 171.1447115 2.233363484 -0.035639 63 84 5817 snR35 snR35 yes 740 271 287 39.356791 283.571469 161.46413 2.208076057 0.248702 63 85 16441 YER074W intron no 566 381 398 30.683381 279.640178 155.1617795 2.190784752 0.083021 63 86 17497 YJL041W intron no 218 121 137 47.857991 295.959541 171.908766 2.235298023 0.153535 63 87 5468 snR32 snR32 yes 388 1 20 31.818538 298.418417 165.1184775 2.217795675 0.009659 63 88 20236 YDR305C spliced yes 40 5 24 29.220279 279.823507 154.521893 2.18899002 0.006233 63 89 11070 "rRNA(18S,5.8S,25S)" 18S yes 7956 2236 2253 36.403209 316.943143 176.673176 2.247170616 -0.068544 63 90 1778 Leu8 LeuTAG_i 5_flank no 301 38.523554 311.43324 174.978397 2.242984434 -0.014374 63 91 3614 Val1 ValAAC_i tRNA/3_flank no 274 33.100816 325.895223 179.4980195 2.254059661 -0.166768 63 92 19542 CBP1 1.2 CBP1 1.2 yes 401 341 358 32.53357 298.830183 165.6818765 2.219275005 0.030326 63 93 1617 Leu5 LeuCAA_v 5_flank no 315 30.249045 301.328693 165.788869 2.219555369 -0.061031 63 94 18106 YLR367W intron no 583 341 357 31.685856 302.29879 166.992323 2.222696506 -0.018491 63 95 19735 Negative Control no 60 NA #VALUE! 43.879886 290.389829 167.1348575 2.223067035 0.193287 63 96 4761 snR5 5_flank no 404 31.245174 261.398175 146.3216745 2.165308663 0.201041 63 97 2056 Lys4 LysTTT_ii 5_flank no 296 25.899936 262.625302 144.262619 2.159153812 -0.123567 63 98 17034 YGR183C intron no 313 121 137 32.983231 273.736987 153.360109 2.185712409 0.206145 63 99 16150 YDR092W intron no 368 281 293 61.701762 365.010605 213.3561835 2.329105234 -0.305084 63 100 1704 Leu6 LeuGAG 3_flank no 282 31.556553 278.249416 154.9029845 2.190059785 0.129868 63 101 11561 "rRNA(18S,5.8S,25S)" 25S yes 7956 4691 4706 21005.74169 17715.34587 19360.54378 4.286917551 -0.444714 63 102 19868 Negative Control no 60 NA #VALUE! 38.482406 309.463218 173.972812 2.240481383 0.003259 63 103 12894 MT_COX1 intronic no 13084 2611 2632 30.513662 322.866153 176.6899075 2.247211743 -0.179043 63 104 18684 YNL112W intron no 1102 861 883 27.002878 297.534665 162.2687715 2.210234948 -0.198113 64 2 20101 YDL061C spliced yes 40 1 20 30.707779 432.044143 231.375961 2.364318236 -0.94734 64 3 13205 MT_COX1 ai4 no 13084 7276 7295 32.752544 309.861512 171.307028 2.233775181 -0.046467 64 4 12209 5S rRNA NTS2 no 1420 1 15 38.658472 318.966279 178.8123755 2.252397573 -0.080835 64 5 19050 YOR234C intron no 627 381 393 37.170946 269.187916 153.179431 2.185200452 0.353686 64 6 4740 snR4 3_flank no 386 66.519922 325.471474 195.995698 2.292246539 0.009187 64 7 13073 MT_COX1 ai3 no 13084 5296 5318 28.404928 296.556286 162.480607 2.210801533 -0.115076 64 8 16395 YER044C 3_exon no 188 141 160 28.675112 266.803929 147.7395205 2.169496685 0.038969 64 9 20943 YLR426W spliced yes 40 13 29 34.708755 302.062667 168.385711 2.226305235 0.040549 64 10 5124 snR11 snR11 yes 458 221 242 28.859989 318.67702 173.7685045 2.239971063 -0.213181 64 11 5777 snR35 snR35 yes 740 71 95 30.746263 298.788116 164.7671895 2.216870734 -0.028417 64 12 15939 YDL115C intron/exon no 189 141 157 80.631659 414.959495 247.795577 2.39409355 -0.46783 64 13 2987 Ser1 SerAGA_i 3_flank no 283 28.631203 294.846522 161.7388625 2.208814384 -0.095048 64 14 1974 Lys2 LysCTT_ii tRNA/3_flank no 273 32.569091 287.411748 159.9904195 2.204093977 0.103197 64 15 10244 RUF6 3_flank no 1251 32.754153 309.731783 171.242968 2.233612746 -0.045412 64 16 16658 YFR032C exon/intron no 431 41 58 33.05409 359.385155 196.2196225 2.292742436 -0.428495 64 17 17624 YJR094W intron no 375 81 100 31.400109 288.244448 159.8222785 2.203637318 0.059702 64 18 16322 YDR471W intron no 484 201 217 83.320943 373.776463 228.548703 2.358978761 -0.208922 64 19 21076 YMR230W spliced yes 40 9 26 31.81748 313.947229 172.8823545 2.237750669 -0.090834 64 20 8902 LSR1 / U2 RNA U2 yes 1375 1151 1163 115.375263 385.448149 250.411706 2.398654627 -0.065457 64 21 4945 snR9 snR9 yes 387 131 146 61.808498 348.887326 205.347912 2.312490291 -0.192944 64 22 9606 RUF3 RUF3/3_flank no 631 29.163071 302.443638 165.8033545 2.219593313 -0.106009 64 23 7624 snR189 3_flank no 389 27.773937 284.009007 155.891472 2.192822358 -0.092414 64 24 14762 MT_ORF11; Leu; Gln ORF11 yes 716 316 344 30.280723 300.349961 165.315342 2.21831316 -0.053948 64 25 5562 snR33 snR33 yes 383 96 112 35.685502 309.131676 172.408589 2.236558898 -0.005128 64 26 14542 MT_21S 21S_rRNA3 yes 4639 2341 2360 29.797878 315.250308 172.524093 2.236849753 -0.15988 64 27 18100 YLR367W intron no 583 221 240 30.774172 313.355376 172.064774 2.235691968 -0.115115 64 28 1002 Gly2 GlyCCC_ii tRNA yes 272 1 13 53.100123 304.935203 179.017663 2.252895883 0.098896 64 29 10986 "rRNA(18S,5.8S,25S)" 18S yes 7956 1816 1833 40227.77036 21502.46954 30865.11995 4.489467969 0.029398 64 30 4653 snR3 snR3/3_flank no 395 32.791173 294.30478 163.5479765 2.213645175 0.066657 64 31 1700 Leu6 LeuGAG tRNA yes 282 66 78 31.239322 279.363224 155.301273 2.191175016 0.111962 64 32 13276 MT_COX1 exon5a yes 13084 8341 8362 29.55047 316.9314 173.240935 2.238650519 -0.178378 64 33 11772 "rRNA(18S,5.8S,25S)" 25S yes 7956 5746 5763 5834.672166 16669.55147 11252.11182 4.051234039 -1.908345 64 34 4608 snR3 5_flank no 395 31.794455 314.36652 173.0804875 2.23824811 -0.094432 64 35 5280 snR30 snR30 yes 801 251 266 37.825315 273.489043 155.657179 2.192169155 0.321736 64 36 21397 Pro2_7 spliced yes 40 21 33 70.271709 278.392512 174.3321105 2.241377388 0.421377 64 37 4199 telomerase RNA telomerase yes 1501 31 48 33.632839 321.696427 177.664633 2.249600983 -0.128118 64 38 19635 RNA14 2.2 RNA14 2.2 yes 401 201 218 31.601192 284.760421 158.1808065 2.199153786 0.088757 64 39 15581 YBR084C intron no 606 381 396 49.803259 325.226876 187.5150675 2.273036171 -0.086911 64 40 416 Asp1 AspGTC_i 5_flank no 271 27.642411 277.88821 152.7653105 2.184024747 -0.071354 64 41 8285 snoRNA cluster4 intergenic no 638 211 229 36.749922 320.040124 178.395023 2.251382734 -0.094848 64 42 17192 YHR021C intron no 650 421 435 47.904902 301.95543 174.930166 2.242864708 0.099531 64 43 13754 MT_COB exon1 yes 7308 496 513 32.68071 287.459777 160.0702435 2.204310606 0.106462 64 44 3013 Ser2 SerAGA_ii tRNA yes 282 26 e11 27.587774 321.574203 174.5809885 2.241996948 -0.276921 64 45 20363 YER131W spliced yes 40 17 36 146.067623 399.003583 272.535603 2.435423245 0.041124 64 46 8925 snR17a / U3a 5_flank no 690 31.442746 332.695504 182.069125 2.260236305 -0.239083 64 47 18598 YNL069C intron no 549 121 142 27.409686 285.904098 156.656892 2.194949506 -0.121782 64 48 13218 MT_COX1 ai4 no 13084 7471 7487 37.398079 286.316104 161.8570915 2.209131732 0.20376 64 49 5910 snR36 snR36 yes 555 6 27 27.439585 306.795005 167.117295 2.223021397 -0.213998 64 50 19950 YBL050W spliced yes 40 9 26 39.503893 311.769604 175.6367485 2.244615389 -0.015096 64 51 9792 RUF4 RUF4 yes 988 736 755 29.505275 296.094563 162.799919 2.211654184 -0.054765 64 52 12059 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7181 7194 54.632335 267.313668 160.9730015 2.206753042 0.453481 64 53 13516 MT_COX1 intronic no 13084 11941 11958 35.395487 327.599511 181.497499 2.258870645 -0.163506 64 54 17952 YLR185W 5_exon no 459 21 42 33.234426 322.207366 177.720896 2.249738494 -0.136974 64 55 15453 YBL087C intron no 604 221 237 38.972964 288.13585 163.554407 2.213662251 0.203933 64 56 10833 "rRNA(18S,5.8S,25S)" 18S yes 7956 1051 1069 5879.370222 10082.67218 7981.021199 3.902058464 -1.061212 64 57 5489 snR32 snR32 yes 388 106 122 79.867936 347.378602 213.623269 2.329648557 -0.061707 64 58 21447 copy of SH126 no 273 42.366411 288.262613 165.314512 2.218310979 0.210327 64 59 6373 snR43 snR43 yes 409 106 118 36.497574 275.143764 155.820669 2.192625065 0.292033 64 60 12426 5S rRNA NTS2 no 1420 1086 1103 32.663724 304.066526 168.365125 2.226252137 -0.000936 64 61 19111 YOR312C intron/exon no 507 441 460 32.770349 321.770498 177.2704235 2.248636282 -0.139444 64 62 15608 YBR119W intron no 189 121 139 38.78456 332.521032 185.652796 2.268701494 -0.195906 64 63 18824 YNL302C intron no 651 301 321 29.00987 369.174446 199.092158 2.299054154 -0.52955 64 64 14586 MT_21S intronic/sce1 no 4639 3001 3018 31.011993 302.51521 166.7636015 2.222101266 -0.042256 64 65 7639 snR189 3_flank no 389 34.969096 300.266281 167.6176885 2.224319847 0.058385 64 66 9673 RUF4 RUF4 yes 988 141 156 60.809318 307.07608 183.942699 2.264682555 0.121807 64 67 552 Cys1 CysGCA tRNA/3_flank no 272 42.930542 282.694042 162.812292 2.21168719 0.266038 64 68 15254 MT_fMet 3_flank no 274 241 269 27.149406 329.856765 178.5030855 2.251645727 -0.340468 64 69 11918 "rRNA(18S,5.8S,25S)" 25S yes 7956 6476 6494 31.18157 308.139608 169.660589 2.22958097 -0.070478 64 70 5414 snR31 snR31 yes 425 136 152 47.253865 335.96261 191.6082375 2.282414176 -0.185549 64 71 11868 "rRNA(18S,5.8S,25S)" 25S yes 7956 6226 6239 197.469364 452.167163 324.8182635 2.51164044 0.047807 64 72 4093 SRP SRP yes 875 356 371 68.957998 321.79046 195.374229 2.290867277 0.052328 64 73 8496 snR19 / U1 RNA 5_flank no 868 47.652945 289.713106 168.6830255 2.227071382 0.211435 64 74 8567 snR19 / U1 RNA U1 yes 868 331 348 31.617374 292.273484 161.945429 2.209368694 0.041345 64 75 12749 MT_COX1 ai1 no 13084 436 452 33.732647 293.569113 163.65088 2.213918345 0.099224 64 76 11382 "rRNA(18S,5.8S,25S)" 25S yes 7956 3796 3813 44666.54759 16790.70357 30728.62558 4.487543136 0.568206 64 77 15020 MT_COX 2; ORF1 ORF1exon1 yes 2427 901 928 32.013613 343.443354 187.7284835 2.273530172 -0.310208 64 78 11248 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3126 3143 40540.38846 14417.27288 27478.83067 4.438998248 0.70246 64 79 11027 "rRNA(18S,5.8S,25S)" 18S yes 7956 2021 2040 14660.82671 15709.56857 15185.19764 4.181420449 -0.684749 64 80 3154 Ser4 SerGCT 3_flank no 301 30.68258 304.406336 167.544458 2.224130067 -0.064881 64 81 8252 snoRNA cluster4 5_flank no 638 46 64 33.00977 308.495424 170.752597 2.232367318 -0.032309 64 82 1213 Ile1 IleAAT tRNA yes 274 25 40 33.176382 297.304612 165.240497 2.218116493 0.060181 64 83 13286 MT_COX1 exon5a yes 13084 8491 8507 33.229782 307.067944 170.148863 2.230829051 -0.018096 64 84 11825 "rRNA(18S,5.8S,25S)" 25S yes 7956 6011 6024 216.724773 399.005142 307.8649575 2.488360258 0.379969 64 85 8268 snoRNA cluster4 snR67 yes 638 126 142 35.00191 297.678567 166.3402385 2.22099732 0.080163 64 86 591 Gln1 GlnCTG 5_flank/tRNA no 272 36.672073 321.452372 179.0622225 2.253003971 -0.107345 64 87 11175 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2761 2778 130.362922 389.293707 259.8283145 2.414686476 0.003856 64 88 6126 snR39B 5_flank no 296 49.549145 354.164624 201.8568845 2.305043566 -0.309206 64 89 4885 snR8 3_flank no 390 30.852752 287.375839 159.1142955 2.2017092 0.046895 64 90 7224 snR64 3_flank no 301 43.757033 325.858559 184.807796 2.266720288 -0.123209 64 91 16255 YDR397C intron/exon no 192 141 156 44.82716 303.032661 173.9299105 2.240374273 0.079434 64 92 18046 YLR333C intron no 523 201 217 53.390226 296.207726 174.798976 2.242538884 0.176889 64 93 18828 YNL302C intron no 651 381 397 36.934302 310.792949 173.8636255 2.240208732 -0.012471 64 94 6754 snR50 5_flank no 290 37.349481 303.915867 170.632674 2.232062197 0.051071 64 95 9060 snR14 / U4 RNA 5_flank no 360 29.80589 320.454703 175.1302965 2.243361283 -0.189747 64 96 12652 MT_15S 15S yes 1848 1531 1548 29.578287 301.078889 165.328588 2.218347957 -0.08292 64 97 7831 snoRNA cluster1 intergenic/snR74 no 1574 951 965 29.451081 282.101578 155.7763295 2.192501467 0.007661 64 98 16547 YER133W intron no 625 101 118 32.956964 297.648408 165.302686 2.21827991 0.051124 64 99 8518 snR19 / U1 RNA U1 yes 868 86 107 29.509593 297.037804 163.2736985 2.212916231 -0.060468 64 100 8430 snoRNA cluster 5 intergenic no 586 316 333 42.170818 329.080321 185.6255695 2.268637799 -0.155455 64 101 14620 MT_21S Sce1 no 4639 3511 3529 31.694342 293.417821 162.5560815 2.211003222 0.036689 64 102 1033 Gly3 GlyGCC 5_flank no 271 28.333189 285.831487 157.082338 2.196127357 -0.069956 64 103 716 Gln3 GlnTTG_ii 3_flank no 272 30.380208 344.457155 187.4186815 2.272812878 -0.339176 64 104 20921 YLR344W spliced yes 40 25 39 51.153081 304.580367 177.866724 2.250094706 0.092795 65 2 20339 YER074W-A spliced yes 40 21 36 30.005431 393.843605 211.924518 2.326181204 -0.693155 65 3 20852 YLR061W spliced yes 40 9 23 54.068701 335.420794 194.7447475 2.289465753 -0.142543 65 4 14770 MT_ORF11; Leu; Gln tRNALeu yes 716 436 452 43.403812 344.64841 194.026111 2.287860179 -0.273802 65 5 19332 YPL218W 3_exon no 239 201 215 38.346823 274.066373 156.206598 2.193699374 0.322195 65 6 5351 snR30 3_flank no 801 31.376285 316.376393 173.876339 2.240240487 -0.115664 65 7 10525 RUF8 RUF8 yes 1151 551 567 31.84506 260.895165 146.3701125 2.165452407 0.233155 65 8 2169 Met2 MetCAT_ii 5_flank no 272 34.17682 303.419772 168.798296 2.227368058 0.023076 65 9 12965 MT_COX1 ai2 no 13084 3676 3698 26.681773 293.603298 160.1425355 2.2045067 -0.198988 65 10 4789 snR5 snR5 yes 404 116 135 26.766125 296.561762 161.6639435 2.208613168 -0.207435 65 11 829 Glu2 GluTTC_i 5_flank no 272 26.742777 313.23905 169.9909135 2.230425708 -0.281645 65 12 10141 RUF6 RUF6 yes 1251 551 568 750.659077 1429.748503 1090.20379 3.037507687 -0.473372 65 13 12629 MT_15S 15S yes 1848 1186 1203 33.43489 291.747177 162.5910335 2.211096592 0.103028 65 14 18593 YNL069C 5_exon no 549 21 37 78.570048 337.589795 208.0799215 2.318230175 -0.003203 65 15 5704 snR34 snR34 yes 750 441 460 30.768949 315.610327 173.189638 2.238521904 -0.128495 65 16 4227 telomerase RNA telomerase yes 1501 171 186 42.9531 336.722656 189.837878 2.278382871 -0.214951 65 17 9073 snR14 / U4 RNA 5_flank no 360 37.375876 277.44688 157.411378 2.197036121 0.281279 65 18 10630 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 36 56 29.622308 291.890425 160.7563665 2.206168181 -0.028755 65 19 4038 SRP SRP yes 875 81 97 33.774698 289.905193 161.8399455 2.209085724 0.125248 65 20 19124 YPL075W 5_exon no 851 1 20 29.669232 299.68892 164.679076 2.216638422 -0.071195 65 21 8315 snoRNA cluster4 intergenic no 638 361 379 31.438113 275.811548 153.6248305 2.186461417 0.139135 65 22 18192 YML024W intron no 498 141 160 29.093628 316.476569 172.7850985 2.237506285 -0.192004 65 23 588 Gln1 GlnCTG 5_flank no 272 42.383985 296.817778 169.6008815 2.229428105 0.128648 65 24 6194 snR40 snR40 yes 297 31 46 45.728793 295.474059 170.601426 2.231982657 0.151556 65 25 16661 YFR032C intron no 431 101 116 46.265901 327.955397 187.110649 2.272098505 -0.127061 65 26 19164 YPL075W intron/exon no 851 801 813 46.07066 291.235344 168.653002 2.226994076 0.192251 65 27 4959 snR9 3_flank no 387 35.629004 283.606656 159.61783 2.203081402 0.207193 65 28 2544 Pro2 ProTGG_i 5_flank no 303 29.177209 288.078001 158.627605 2.200378767 -0.034772 65 29 9430 RUF2 5_flank/RUF2 no 468 36.322187 321.325979 178.824083 2.252426007 -0.107121 65 30 20877 YLR185W spliced yes 40 17 31 32.876345 286.033824 159.4550845 2.202638372 0.12185 65 31 4143 SRP SRP yes 875 606 620 66.418439 329.163279 197.790859 2.296206217 -0.019269 65 32 889 Glu3 GluTTC_ii 5_flank no 272 27.58308 290.702709 159.1428945 2.201787253 -0.134148 65 33 14244 MT_Ser tRNA yes 290 136 153 29.740065 282.901046 156.3205555 2.19401609 0.019064 65 34 14738 MT_Cys; His 3_flank no 456 391 417 29.76074 303.866463 166.8136015 2.222231459 -0.093467 65 35 17515 YJL136C intron no 560 261 278 31.702083 288.41992 160.0610015 2.20428553 0.068575 65 36 19901 snR17B spliced yes 40 9 24 57.845812 262.980793 160.4133025 2.20524038 0.510657 65 37 3515 Tyr1 TyrGTA_i 3_flank no 289 31.468419 321.156971 176.312695 2.246283584 -0.151513 65 38 1412 Leu1 LeuCAA_i 3_flank no 315 42.42238 294.228106 168.325243 2.22614925 0.153215 65 39 18575 YNL044W 5_exon no 179 21 39 33.394703 324.441473 178.918088 2.252654248 -0.152059 65 40 6855 snR56 5_flank no 288 88.573708 309.008824 198.791266 2.2983973 0.268675 65 41 5950 snR36 snR36 yes 555 206 226 29.469977 289.186262 159.3281195 2.20229243 -0.024371 65 42 12006 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6916 6939 29.496298 289.094859 159.2955785 2.202203721 -0.022563 65 43 1190 Ile1 IleAAT 5_flank no 274 32.497701 334.173616 183.3356585 2.263246943 -0.236374 65 44 14534 MT_21S 21S_rRNA3 yes 4639 2221 2243 29.4602 295.921212 162.690706 2.211362744 -0.055544 65 45 7724 snoRNA cluster1 snR77/intergenic no 1574 416 435 35.409334 320.549454 177.979394 2.250369724 -0.102685 65 46 18934 YOL121C intron no 490 341 358 31.365869 320.37411 175.8699895 2.245191738 -0.146833 65 47 18608 YNL069C intron no 549 321 337 53.403279 297.488749 175.446014 2.244143506 0.165558 65 48 19673 SIR1 2.4 SIR1 2.4 yes 401 181 197 31.385246 276.099987 153.7426165 2.186794268 0.135128 65 49 4241 telomerase RNA telomerase yes 1501 241 255 69.742395 335.055299 202.398847 2.306208034 -0.042551 65 50 17938 YLR093C intron no 241 161 178 29.513105 284.541928 157.0275165 2.195975762 -0.00054 65 51 2465 Phe5 PheGAA_v 3_flank no 291 29.547761 292.37579 160.9617755 2.206722754 -0.034882 65 52 12228 5S rRNA NTS2 no 1420 96 108 111.552762 343.453083 227.5029225 2.35698698 0.164102 65 53 19514 ACT1 ACT1 yes 401 181 203 27.432701 334.239606 180.8361535 2.257285261 -0.353931 65 54 6896 snR56 3_flank no 288 29.267376 271.862352 150.564864 2.177723636 0.047171 65 55 3287 Thr2 ThrCGT tRNA yes 272 36 48 463.812077 1649.548178 1056.680128 3.02394354 -1.306454 65 56 78 Ala2 AlaTGC tRNA yes 273 26 40 30.839957 303.585054 167.2125055 2.223268754 -0.054565 65 57 356 Arg5 ArgTCT 3_flank no 272 70.024623 276.368119 173.196371 2.238538788 0.438574 65 58 4994 snR10 snR10 yes 445 1 18 94.871509 331.173872 213.0226905 2.328425866 0.145495 65 59 10849 "rRNA(18S,5.8S,25S)" 18S yes 7956 1131 1153 40.311782 317.372113 178.8419475 2.25246939 -0.062506 65 60 12576 MT_15S 15S yes 1848 391 410 30.598708 332.627816 181.613262 2.259147559 -0.249847 65 61 21145 YNL246W spliced yes 40 1 17 41.403411 276.261817 158.832614 2.200939683 0.32704 65 62 19819 Negative Control no 60 NA #VALUE! 32.660947 267.187704 149.9243255 2.175872104 0.240478 65 63 17186 YHR021C intron no 650 301 317 41.530821 340.914581 191.222701 2.281539448 -0.254542 65 64 17341 YIL018W intron no 500 221 238 34.698419 284.189901 159.44416 2.202608617 0.190084 65 65 18714 YNL130C intron no 541 361 378 30.817096 304.429816 167.623456 2.224334791 -0.060455 65 66 2566 Pro2 ProTGG_i intron/tRNA no 303 i30 48 100.590577 317.998622 209.2945995 2.320758022 0.273308 65 67 2539 Pro2 ProTGG_i 5_flank no 303 30.971901 309.659322 170.3156115 2.231254458 -0.086582 65 68 5783 snR35 snR35 yes 740 101 119 43.003679 308.806456 175.9050675 2.245278351 0.021748 65 69 9258 snR6 / U6 RNA 3_flank no 312 78.280194 283.155427 180.7178105 2.257000956 0.420918 65 70 14329 MT_VAR1 VAR1 yes 1467 1141 1160 29.393166 296.391929 162.8925475 2.211901215 -0.0612 65 71 7659 snoRNA cluster1 5_flank/snR78 no 1574 91 107 29.512503 281.283506 155.3980045 2.191445438 0.014765 65 72 14746 MT_ORF11; Leu; Gln 5_flank/orf11 no 716 76 104 27.596722 311.755468 169.676095 2.229620661 -0.226484 65 73 18993 YOR122C exon/intron no 309 41 57 31.683307 289.013399 160.348353 2.205064503 0.064172 65 74 13514 MT_COX1 intronic no 13084 11911 11935 27.697632 327.158214 177.427923 2.249021969 -0.304467 65 75 4353 telomerase RNA telomerase yes 1501 801 820 31.780128 324.367116 178.073622 2.250599592 -0.172012 65 76 21189 YOL120C spliced yes 40 5 21 35.916846 273.01295 154.464898 2.188829802 0.299996 65 77 19456 CYC1 CYC1 yes 400 221 236 29.949536 283.36285 156.656193 2.194947568 0.027798 65 78 5321 snR30 snR30 yes 801 456 473 43.489515 295.201807 169.345661 2.228774074 0.146934 65 79 20947 YLR448W spliced yes 40 5 21 100.530809 360.489707 230.510258 2.362690257 -0.01143 65 80 10100 RUF6 RUF6 yes 1251 346 365 30.647938 278.678249 154.6630935 2.189386692 0.085813 65 81 16903 YGL226C 3_exon no 249 221 237 37.207589 300.397926 168.8027575 2.227379537 0.082993 65 82 20517 YGR034W spliced yes 40 1 17 33.194844 284.706724 158.950784 2.201262674 0.14048 65 83 13896 MT_COB intronic no 7308 2626 2650 29.040025 347.148554 188.0942895 2.274375611 -0.377092 65 84 19535 CBP1 1.2 CBP1 1.2 yes 401 201 220 31.089828 308.451434 169.770631 2.229862563 -0.075418 65 85 5994 snR36 3_flank no 555 30.887989 303.199255 167.043622 2.222829898 -0.050598 65 86 4376 telomerase RNA telomerase yes 1501 916 932 32.638535 299.164611 165.901573 2.219850504 0.03163 65 87 11787 "rRNA(18S,5.8S,25S)" 25S yes 7956 5821 5836 217.629814 536.734402 377.182108 2.576551083 -0.199076 65 88 2935 Ser1 SerAGA_i 5_flank no 283 29.654119 305.293615 167.473867 2.223947048 -0.105842 65 89 1255 Ile2 IleTAT_i 5_flank no 333 31.109546 299.628095 165.3688205 2.218453629 -0.02132 65 90 19095 YOR312C intron no 507 121 142 28.603636 312.211899 170.4077675 2.231489387 -0.184761 65 91 1335 Ile3 IleTAT_ii tRNA-intron no 333 i19 i35 31.903629 288.714772 160.3092005 2.204958448 0.073312 65 92 20902 YLR306W spliced yes 40 21 39 31.356427 276.6829 154.0196635 2.18757617 0.130892 65 93 19200 YPL081W intron no 601 161 182 34.555705 310.625527 172.590616 2.237017179 -0.030363 65 94 13595 MT_ATP8/AAP1 5_flank no 347 61 83 28.605128 281.054475 154.8298015 2.189854557 -0.032671 65 95 12461 5S rRNA 5S yes 1420 1261 1275 8546.73415 5767.572506 7157.153328 3.854740321 0.325736 65 96 18080 YLR344W intron no 547 361 373 40.504448 280.39879 160.451619 2.205344104 0.283505 65 97 14402 MT_21S 21S_rRNA3 yes 4639 241 259 42.931544 313.336062 178.133803 2.25074634 -0.018433 65 98 14709 MT_Thr2 3_flank no 276 211 239 27.755782 319.444357 173.6000695 2.239549895 -0.258346 65 99 11044 "rRNA(18S,5.8S,25S)" 18S yes 7956 2106 2124 21391.71004 16963.47363 19177.59184 4.282794071 -0.350365 65 100 20562 YHR001W-A spliced yes 40 13 32 32.338831 353.478341 192.908586 2.285351558 -0.384188 65 101 6996 snR60 snR60 yes 304 61 80 29.849009 335.911973 182.880491 2.262167379 -0.284399 65 102 6289 snR42 snR42 yes 551 226 243 30.960489 293.876662 162.4185755 2.210635697 0.00935 65 103 19282 YPL143W intron no 625 521 542 30.256626 314.234709 172.2456675 2.236148307 -0.137985 65 104 16250 YDR397C exon/intron no 192 41 55 33.195398 263.803592 148.499495 2.171724977 0.280895 66 2 21402 Pro8 spliced yes 40 13 25 44.524016 347.942231 196.2331235 2.292772317 -0.292653 66 3 20789 YKL081W spliced yes 40 17 35 28.653745 342.316411 185.485078 2.268308977 -0.352419 66 4 9461 RUF2 RUF2 yes 468 146 162 51.539098 352.125345 201.8322215 2.3049905 -0.282573 66 5 13484 MT_COX1 intronic no 13084 11461 11483 28.480617 361.602 195.0413085 2.290126602 -0.485955 66 6 5451 snR32 5_flank no 388 32.656256 331.00698 181.831618 2.259669403 -0.210829 66 7 8444 snoRNA cluster 5 snR128 yes 586 386 402 33.224469 273.934298 153.5793835 2.18633292 0.212428 66 8 21059 YMR194W spliced yes 40 13 30 33.731889 309.634017 171.682953 2.234727175 -0.032453 66 9 14957 MT_Met 3_flank no 276 226 240 30.243666 288.554305 159.3989855 2.202485553 0.018539 66 10 14052 MT_COB bi4 no 7308 4966 4985 28.470134 282.038145 155.2541395 2.191043188 -0.044673 66 11 3634 Val2 ValAAC_ii 5_flank no 274 30.423868 302.216466 166.320167 2.220944912 -0.06043 66 12 20020 YBR089C-A spliced yes 40 13 32 32.31509 286.983295 159.6491925 2.203166726 0.097768 66 13 310 Arg4 ArgCCT 3_flank no 272 59.539258 339.271427 199.4053425 2.29973679 -0.137829 66 14 2882 Pro8 ProTGG_vii 5_flank no 305 767.042417 6360.584455 3563.813436 3.551914961 -2.81303 66 15 10039 RUF6 RUF6 yes 1251 41 57 62.077767 372.114866 217.0963165 2.336652455 -0.350075 66 16 11274 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3256 3273 34.890064 301.237277 168.0636705 2.225473844 0.049469 66 17 6764 snR50 5_flank/snR50 no 290 31.270129 296.81922 164.0446745 2.214962136 0.001397 66 18 4288 telomerase RNA telomerase yes 1501 476 492 82.945871 360.700293 221.823082 2.346006735 -0.129531 66 19 6266 snR42 snR42 yes 551 111 130 33.673138 278.268999 155.9710685 2.193044047 0.197528 66 20 21831 copy of SH16331 no 484 29.594382 313.496895 171.5456385 2.234379681 -0.156767 66 21 9781 RUF4 RUF4 yes 988 681 697 45.410005 350.399505 197.904755 2.296456229 -0.306391 66 22 3232 Thr1 ThrAGT tRNA yes 273 16 28 29.07967 264.268961 146.6743155 2.16635407 0.074414 66 23 2634 Pro3 ProTGG_ii 3_flank no 303 28.733488 326.120885 177.4271865 2.249020166 -0.26028 66 24 7574 snR189 5_flank no 389 32.280989 284.243575 158.262282 2.199377424 0.114327 66 25 2098 Lys4 LysTTT_ii 3_flank no 296 41.640377 283.480177 162.560277 2.211014431 0.255493 66 26 4055 SRP SRP yes 875 166 184 28.109075 298.435215 163.272145 2.212912098 -0.139755 66 27 19017 YOR182C intron no 511 221 242 41.606011 375.908958 208.7574845 2.319642055 -0.513384 66 28 5267 snR30 snR30 yes 801 186 198 77.038788 329.506659 203.2727235 2.308079106 0.045356 66 29 11423 "rRNA(18S,5.8S,25S)" 25S yes 7956 4001 4016 10424.37505 9299.730546 9862.052797 3.993967323 -0.228424 66 30 17246 YHR097C 5_exon no 224 21 36 58.840674 333.479699 196.1601865 2.292610866 -0.098504 66 31 19202 YPL081W intron no 601 201 222 29.389396 299.619202 164.504299 2.216177252 -0.080662 66 32 7525 snR79 5_flank no 284 29.640603 297.546258 163.5934305 2.21376586 -0.058992 66 33 17653 YJR145C intron/exon no 356 301 317 35.834473 287.456415 161.645444 2.208563468 0.176253 66 34 11686 "rRNA(18S,5.8S,25S)" 25S yes 7956 5316 5336 326.318304 1129.311032 727.814668 2.862020804 -1.089734 66 35 19412 YPR098C intron/exon no 196 141 158 49.853832 294.812801 172.3333165 2.236369246 0.172519 66 36 16509 YER117W intron no 571 361 377 35.485557 303.46559 169.4755735 2.229107112 0.038263 66 37 1985 Lys2 LysCTT_ii 3_flank no 273 29.313098 317.223953 173.2685255 2.23871968 -0.188499 66 38 14556 MT_21S 21S_rRNA3 yes 4639 2551 2572 134.751508 389.423217 262.0873625 2.41844608 0.028708 66 39 5595 snR33 3_flank no 383 31.119518 286.759493 158.9395055 2.201231857 0.059838 66 40 996 Gly2 GlyCCC_ii 5_flank no 272 72.133645 339.917022 206.0253335 2.313920626 -0.061269 66 41 6970 snR60 5_flank no 304 29.183789 289.837677 159.510733 2.202789911 -0.04253 66 42 21729 copy of SH12129 no 7956 33.206395 305.669403 169.437899 2.229010558 -0.007106 66 43 1728 Leu7 LeuTAA 5_flank no 284 35.244126 289.735275 162.4897005 2.210825838 0.14986 66 44 14251 MT_Ser 3_flank no 290 241 269 29.294762 339.432288 184.363525 2.265675003 -0.317924 66 45 3194 Ser5 SerTGA 3_flank no 282 46.277809 332.272246 189.2750275 2.277093318 -0.161518 66 46 19088 YOR293W 3_exon no 537 521 535 143.124961 328.262035 235.693498 2.372347602 0.438298 66 47 21160 YNL301C spliced yes 40 13 25 49.350744 266.008865 157.6798045 2.197776073 0.450565 66 48 1338 Ile3 IleTAT_ii tRNA-intron no 333 i34 i49 39.402649 283.048644 161.2256465 2.207434127 0.253745 66 49 6869 snR56 5_flank no 288 29.481313 300.414157 164.947735 2.217346356 -0.08228 66 50 11786 "rRNA(18S,5.8S,25S)" 25S yes 7956 5816 5829 495.07294 959.401076 727.237008 2.861675971 -0.319332 66 51 18859 YNR053C intron no 631 161 175 49.751311 266.547958 158.1496345 2.199068193 0.446163 66 52 8642 snR19 / U1 RNA 3_flank no 868 27.551564 300.890512 164.221038 2.215428793 -0.181793 66 53 7213 snR64 3_flank no 301 27.450119 305.93541 166.6927645 2.221916749 -0.209666 66 54 16246 YDR381W 3_exon no 866 821 838 29.274108 300.538445 164.9062765 2.217237186 -0.090406 66 55 2394 Phe4 PheGAA_iv tRNA yes 291 21 33 60.849116 326.004762 193.426939 2.286516959 -0.029204 66 56 2191 Met2 MetCAT_ii 3_flank no 272 32.79952 322.111063 177.4552915 2.249088954 -0.14169 66 57 15695 YBR220C intron no 521 61 77 36.539024 301.660772 169.099898 2.228143346 0.065118 66 58 10032 RUF6 RUF6 yes 1251 6 23 32.525576 299.214643 165.8701095 2.219768131 0.027702 66 59 16169 YDR139C intron no 173 101 116 69.705948 297.803462 183.754705 2.264238468 0.248068 66 60 13443 MT_COX1 intronic no 13084 10846 10867 28.596539 334.077151 181.336845 2.258486055 -0.309648 66 61 11549 "rRNA(18S,5.8S,25S)" 25S yes 7956 4631 4648 76.560881 324.908558 200.7347195 2.302622495 0.076039 66 62 15444 YBL087C exon/intron no 604 41 60 28.611145 305.807389 167.209267 2.223260343 -0.146325 66 63 8881 LSR1 / U2 RNA U2 yes 1375 1046 1062 54.011778 320.889868 187.450823 2.272887352 -0.02821 66 64 10875 "rRNA(18S,5.8S,25S)" 18S yes 7956 1261 1274 4353.021264 5082.629162 4717.825213 3.673741847 -0.285787 66 65 11112 "rRNA(18S,5.8S,25S)" 18S yes 7956 2446 2464 34.544875 316.946349 175.745612 2.24488449 -0.080276 66 66 7160 snR63 3_flank no 455 32.704001 276.977429 154.840715 2.189885168 0.1756 66 67 5220 snR30 5_flank no 801 30.896608 297.526151 164.2113795 2.21540325 -0.015531 66 68 18274 YML056C intron no 508 361 382 35.036492 297.392167 166.2143295 2.220668462 0.082951 66 69 21011 YML124C spliced yes 40 13 30 29.279058 302.368833 165.8239455 2.219647244 -0.101409 66 70 14174 MT_COB intronic no 7308 6796 6817 27.446631 340.334288 183.8904595 2.264559198 -0.386671 66 71 15215 MT_COX3 cox3 no 1010 646 667 27.571188 309.580463 168.5758255 2.226795295 -0.2186 66 72 21581 copy of SH5870 no 740 35.720286 281.880995 158.8006405 2.20085225 0.223335 66 73 20642 YHR203C spliced yes 40 5 19 309.037185 480.248621 394.642903 2.596204297 0.357547 66 74 20556 YHL001W spliced yes 40 13 32 31.755577 322.397214 177.0763955 2.248160673 -0.157277 66 75 3315 Thr3 ThrTGT_i 5_flank no 272 31.767069 275.993132 153.8801005 2.187182461 0.151802 66 76 10831 "rRNA(18S,5.8S,25S)" 18S yes 7956 1041 1058 19758.48148 13349.01109 16553.74629 4.218896295 -0.049196 66 77 838 Glu2 GluTTC_i 5_flank no 272 33.942474 281.458002 157.700238 2.197832349 0.184867 66 78 11301 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3391 3409 36.189032 317.261385 176.7252085 2.247298503 -0.071887 66 79 14281 MT_VAR1 VAR1 yes 1467 421 445 30.30283 328.831366 179.567098 2.254226764 -0.225502 66 80 5178 snR13 snR13 yes 324 46 61 43.095671 279.146414 161.1210425 2.207152263 0.301674 66 81 8 Ala1 AlaAGC 5_flank no 273 28.766544 299.809662 164.288103 2.215606115 -0.10995 66 82 18776 YNL265C intron no 205 61 84 28.950555 303.986032 166.4682935 2.221331528 -0.123012 66 83 1858 Leu9 LeuTAG_ii tRNA/intron no 301 30 i10 33.25221 299.660498 166.456354 2.221300378 0.04253 66 84 1044 Gly3 GlyGCC 5_flank no 271 30.026457 299.385556 164.7060065 2.216709437 -0.056832 66 85 1497 Leu3 LeuCAA_iii 5_flank no 314 35.091205 324.593304 179.8422545 2.254891738 -0.138537 66 86 1240 Ile1 IleAAT 3_flank no 274 34.754097 272.417364 153.5857305 2.186350868 0.269653 66 87 12500 MT_tRNA Pro tRNA yes 272 151 167 32.270972 287.038462 159.654717 2.203181754 0.095988 66 88 9651 RUF4 RUF4 yes 988 31 48 31.808527 292.881703 162.345115 2.210439225 0.043811 66 89 10449 RUF8 RUF8 yes 1151 171 188 29.320765 307.717292 168.5190285 2.226648947 -0.132206 66 90 21606 copy of SH6882 no 288 30.796464 276.807523 153.8019935 2.186961965 0.102294 66 91 12957 MT_COX1 ai2 no 13084 3556 3575 32.210323 341.874227 187.042275 2.271939776 -0.296354 66 92 12176 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7766 7783 44.993576 336.452971 190.7232735 2.280403692 -0.201437 66 93 14853 MT_Ser2; Arg2 5_flank no 360 61 89 31.192952 320.593282 175.893117 2.245248845 -0.150812 66 94 11519 "rRNA(18S,5.8S,25S)" 25S yes 7956 4481 4503 30.749028 320.429871 175.5894495 2.244498417 -0.157074 66 95 10420 RUF8 RUF8 yes 1151 26 47 26.736171 335.847779 181.291975 2.25837858 -0.389624 66 96 1877 Leu9 LeuTAG_ii 3_flank no 301 59.021985 315.890037 187.456011 2.272899371 0.039607 66 97 3353 Thr3 ThrTGT_i 3_flank no 272 56.7942 289.055519 172.9248595 2.237857431 0.257156 66 98 2115 Met1 MetCAT_i 5_flank no 273 44.006374 292.930391 168.4683825 2.226518406 0.169804 66 99 8916 LSR1 / U2 RNA 3_flank no 1375 54.75287 354.596898 204.674884 2.311064553 -0.279451 66 100 6187 snR40 5_flank/snR40 no 297 58.506536 362.441638 210.474087 2.323198634 -0.309957 66 101 8731 LSR1 / U2 RNA U2 yes 1375 296 313 39.775699 299.643499 169.709599 2.229706407 0.096374 66 102 2980 Ser1 SerAGA_i 3_flank no 283 31.837087 292.300478 162.0687825 2.20969937 0.048406 66 103 11356 "rRNA(18S,5.8S,25S)" 25S yes 7956 3666 3679 2447.063179 1262.988044 1855.025612 3.26834991 1.256123 66 104 19513 ACT1 ACT1 yes 401 161 177 56.310843 337.290042 196.8004425 2.294026071 -0.142916 67 2 1249 Ile2 IleTAT_i 5_flank no 333 28.771249 344.567244 186.6692465 2.271072774 -0.362497 67 3 10856 "rRNA(18S,5.8S,25S)" 18S yes 7956 1166 1179 73.246188 368.947395 221.0967915 2.34458244 -0.249733 67 4 16386 YER007C 3_exon no 203 161 177 29.304286 309.76928 169.536783 2.229263938 -0.14503 67 5 13715 MT_Glu (and 5_flank processing site for COB) 3_flank no 368 256 282 33.31254 317.938388 175.625464 2.244587485 -0.10304 67 6 3662 Val2 ValAAC_ii tRNA yes 274 50 64 32.087783 285.248286 158.6680345 2.200489442 0.101562 67 7 7678 snoRNA cluster1 snR78/intergenic no 1574 186 207 32.69386 327.797781 180.2458205 2.255865203 -0.186275 67 8 6247 snR42 snR42 yes 551 16 28 73.975827 302.96523 188.4705285 2.275243448 0.230441 67 9 15234 MT_COX3 3_flank no 1010 931 957 26.073036 300.384948 163.228992 2.212797299 -0.265256 67 10 11306 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3416 3429 43.512059 304.985429 174.248744 2.241169656 0.057574 67 11 14428 MT_21S 21S_rRNA3 yes 4639 631 659 26.304028 293.737707 160.0208675 2.20417662 -0.221752 67 12 18471 YMR143W intron no 644 421 435 28.203836 283.975912 156.089874 2.19337473 -0.068393 67 13 15579 YBR084C intron no 606 341 358 32.041121 301.748351 166.894736 2.222442639 -0.003493 67 14 18249 YML034W intron no 226 81 102 33.105881 300.732975 166.919428 2.222506888 0.031875 67 15 14946 MT_Met 5_flank no 276 61 85 28.497289 322.859508 175.6783985 2.244718364 -0.250394 67 16 9184 snR7 U5 RNA U5 yes 415 191 208 30.738431 310.376 170.5572155 2.231870097 -0.098739 67 17 4036 SRP SRP yes 875 71 88 29.097772 277.970034 153.533903 2.18620429 0.008555 67 18 14497 MT_21S 21S_rRNA3 yes 4639 1666 1683 702.160614 943.764088 822.962351 2.915379968 0.129322 67 19 19347 YPL249C intron no 337 81 98 33.520841 303.121046 168.3209435 2.226138157 0.017486 67 20 17833 YKR094C intron no 468 101 118 33.512304 311.914767 172.7135355 2.237326374 -0.053294 67 21 4252 telomerase RNA telomerase yes 1501 296 313 31.343146 287.394993 159.3690695 2.202404037 0.063239 67 22 184 Arg2 ArgACG_ii tRNA yes 273 36 52 58.921661 329.127637 194.024649 2.287856906 -0.064798 67 23 20219 YDR092W spliced yes 40 5 22 44.515833 324.27884 184.3973365 2.265754644 -0.10677 67 24 8453 snoRNA cluster 5 snR128 yes 586 431 447 30.493783 271.329772 150.9117775 2.178723134 0.113563 67 25 4085 SRP SRP yes 875 316 328 63.331882 317.718451 190.5251665 2.27995235 0.050168 67 26 1405 Leu1 LeuCAA_i tRNA yes 315 54 71 36.032422 305.141072 170.586747 2.231945288 0.030988 67 27 15106 MT_COX 2; ORF1 ORF2exon2 yes 2427 2191 2208 30.327808 288.46154 159.394674 2.202473806 0.022033 67 28 19448 CYC1 CYC1 yes 400 61 78 30.535257 298.693671 164.614464 2.216467992 -0.035026 67 29 4028 SRP SRP yes 875 31 48 30.835754 287.5489 159.192327 2.201922131 0.045211 67 30 13488 MT_COX1 intronic no 13084 11521 11542 29.192874 321.867728 175.530301 2.244352098 -0.219548 67 31 74 Ala2 AlaTGC tRNA yes 273 6 18 37.51318 293.21169 165.362435 2.218436859 0.146219 67 32 3094 Ser3 SerCGA 3_flank no 301 54.038538 319.082317 186.5604275 2.270819528 -0.01344 67 33 13848 MT_COB bi2 no 7308 1906 1927 27.781731 304.318508 166.0501195 2.220239192 -0.183951 67 34 637 Gln2 GlnTTG_i 5_flank no 272 31.785625 307.554453 169.670039 2.22960516 -0.046943 67 35 10542 RUF8 RUF8 yes 1151 636 653 29.613155 258.606525 144.10984 2.158693636 0.130751 67 36 8107 snoRNA cluster 3; 5_flank no 743 46 62 35.387528 337.088918 186.238223 2.270068819 -0.243312 67 37 3755 Val4 ValTAC tRNA yes 274 1 13 79.993312 317.787472 198.890392 2.298613804 0.150538 67 38 14816 MT_Lys; Arg1; Gly tRNA/intergenic no 682 421 443 28.982092 307.649109 168.3156005 2.226124371 -0.143929 67 39 5547 snR33 snR33 yes 383 21 35 44.602115 298.41891 171.5105125 2.234290745 0.120801 67 40 16731 YGL076C exon/intron no 559 41 53 54.424957 335.319098 194.8720275 2.289749504 -0.139809 67 41 13631 MT_ATP6 ATP6 yes 980 271 295 28.865741 327.10044 177.9830905 2.250378744 -0.261007 67 42 16330 YDR471W intron no 484 361 380 30.907612 275.721304 153.314458 2.185583112 0.113128 67 43 13682 MT_ORF 5 5_flank no 331 76 100 31.009157 297.341532 164.1753445 2.215307936 -0.010591 67 44 398 Asn1 AsnGTT tRNA/3_flank no 274 33.089605 281.869484 157.4795445 2.19722415 0.155604 67 45 16003 YDL137W intron no 432 141 153 71.231584 370.205671 220.7186275 2.343838987 -0.27215 67 46 3531 Tyr2 TyrGTA_ii 5_flank no 289 29.290176 272.388115 150.8391455 2.178514063 0.045808 67 47 21722 copy of SH11712 no 7956 126.698089 338.928985 232.813537 2.367008229 0.280772 67 48 4641 snR3 snR3 yes 395 121 137 29.45438 290.582547 160.0184635 2.204170096 -0.031608 67 49 9101 snR14 / U4 RNA U4 yes 360 121 140 29.54016 298.270152 163.905156 2.214592615 -0.06701 67 50 18028 YLR316C 5_exon no 168 1 17 33.625707 297.449312 165.5375095 2.218896417 0.065459 67 51 21804 copy of SH15279 no 701 27.615596 319.33255 173.474073 2.239234575 -0.262989 67 52 9946 RUF5-1 RUF5-1 yes 975 536 550 35.598373 285.041969 160.320171 2.204988167 0.194361 67 53 19843 Negative Control no 60 NA #VALUE! 36.450736 290.494106 163.472421 2.213444495 0.157334 67 54 19205 YPL081W intron no 601 261 276 35.232214 303.127038 169.179626 2.228348061 0.038054 67 55 253 Arg3 ArgCCG 3_flank no 272 38.949343 290.429303 164.689323 2.216665444 0.181726 67 56 3323 Thr3 ThrTGT_i 5_flank no 272 30.842338 304.972899 167.9076185 2.225070402 -0.062882 67 57 19628 RNA14 2.2 RNA14 2.2 yes 401 61 76 38.521086 283.600642 161.060864 2.206990025 0.239561 67 58 21760 copy of SH13392 no 13084 30.60773 360.94785 195.77779 2.291763422 -0.451656 67 59 4182 telomerase RNA 5_flank no 1501 32.508956 293.384003 162.9464795 2.212044982 0.063401 67 60 6560 snR47 5_flank no 299 40.275365 286.211848 163.2436065 2.212836181 0.225654 67 61 6604 snR47 3_flank no 299 28.569318 294.956089 161.7627035 2.208878397 -0.098905 67 62 6838 snR52 3_flank no 292 30.473245 310.029341 170.251293 2.231090419 -0.10573 67 63 9377 RUF1 RUF1 yes 750 461 476 69.507993 327.463623 198.485808 2.29772946 0.012559 67 64 15861 YDL079C intron no 392 141 158 30.455899 288.221812 159.3388555 2.202321693 0.027964 67 65 15466 YBL087C intron no 604 481 496 45.142561 302.615447 173.879004 2.240247144 0.084212 67 66 17877 YLR048W intron no 459 61 78 28.704222 297.264729 162.9844755 2.212146239 -0.101968 67 67 9339 RUF1 RUF1 yes 750 271 287 40.675118 298.421239 169.5481785 2.229293128 0.109836 67 68 19524 ACT1 ACT1 yes 401 381 398 29.075434 286.994959 158.0351965 2.198753821 -0.035185 67 69 19808 Negative Control no 60 NA #VALUE! 33.253718 274.871034 154.062376 2.187696591 0.207061 67 70 15667 YBR189W 3_exon no 513 481 498 29.450738 306.083568 167.767153 2.224706935 -0.117786 67 71 11497 "rRNA(18S,5.8S,25S)" 25S yes 7956 4371 4387 57.886123 325.537857 191.71199 2.282649275 -0.043397 67 72 4894 snR8 3_flank no 390 29.670288 290.354839 160.0125635 2.204154083 -0.019216 67 73 262 Arg4 ArgCCT 5_flank no 272 29.704057 285.520279 157.612168 2.197589743 0.00491 67 74 8709 LSR1 / U2 RNA U2 yes 1375 186 203 31.717785 293.036328 162.3770565 2.210524664 0.039856 67 75 10567 RUF8 RUF8 yes 1151 761 777 47.91076 304.439409 176.1750845 2.245944488 0.077934 67 76 85 Ala2 AlaTGC tRNA yes 273 61 73 591.039168 501.740063 546.3896155 2.737502437 0.998002 67 77 6963 snR58 3_flank no 296 31.816026 303.219261 167.5176435 2.224060555 -0.019808 67 78 19683 SIR1 2.4 SIR1 2.4 yes 401 381 400 59.676705 366.943863 213.310284 2.329011794 -0.332101 67 79 6924 snR58 5_flank/snR58 no 296 30.220347 300.881339 165.550843 2.218931397 -0.059287 67 80 8292 snoRNA cluster4 intergenic no 638 246 263 38.821459 277.183502 158.0024805 2.198663905 0.299339 67 81 19490 YPT1 YPT1 yes 402 101 113 66.605018 303.941908 185.273463 2.267813219 0.180238 67 82 6184 snR40 5_flank no 297 29.936287 315.930188 172.9332375 2.237878472 -0.159007 67 83 13395 MT_COX1 intronic no 13084 10126 10150 30.010109 310.970357 170.490233 2.231699504 -0.127302 67 84 5696 snR34 snR34 yes 750 401 419 31.007427 299.03368 165.0205535 2.217538039 -0.021098 67 85 7629 snR189 3_flank no 389 31.878029 290.532499 161.205264 2.207379219 0.060918 67 86 11993 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6851 6866 59.781217 319.163424 189.4723205 2.277545774 0.018102 67 87 7955 snoRNA cluster 2 5_flank no 739 11 28 30.232162 299.371382 164.801772 2.216961877 -0.049616 67 88 1851 Leu9 LeuTAG_ii 5_flank/tRNA no 301 267.488984 495.938848 381.713916 2.581737993 0.152078 67 89 13532 MT_COX1 intronic no 13084 12181 12201 43.476966 307.484794 175.48088 2.244229804 0.035072 67 90 19316 YPL198W intron no 509 381 398 30.989221 282.401166 156.6951935 2.195055675 0.083655 67 91 16712 YGL031C intron no 556 381 393 42.19426 262.920302 152.557281 2.18343294 0.464392 67 92 10015 RUF6 5_flank no 1251 30.058022 307.876203 168.9671125 2.227802182 -0.107224 67 93 2693 Pro4 ProTGG_iii 3_flank no 302 40.941889 280.930484 160.9361865 2.206653706 0.279193 67 94 458 Asp1 AspGTC_i 3_flank no 271 34.787737 280.362631 157.575184 2.197487823 0.217732 67 95 13151 MT_COX1 intronic no 13084 6466 6480 30.689433 285.062534 157.8759835 2.198316069 0.056234 67 96 16618 YFL039C intron no 408 101 115 45.891382 291.067541 168.4794615 2.226546966 0.193277 67 97 9767 RUF4 RUF4 yes 988 611 627 30.150574 272.139122 151.144848 2.179393348 0.09201 67 98 10648 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 126 141 1415.252884 3656.257136 2535.75501 3.404107292 -1.139545 67 99 19557 CBP1 2.2 CBP1 2.2 yes 401 241 263 28.151093 303.597957 165.874525 2.219779692 -0.160273 67 100 19070 YOR293W intron no 537 161 178 66.172576 332.866761 199.5196685 2.299985715 -0.048416 67 101 16665 YFR032C intron no 431 181 198 30.009319 307.625605 168.817462 2.227417367 -0.107418 67 102 19324 YPL218W exon/intron no 239 41 58 33.71698 284.369509 159.0432445 2.201515227 0.158959 67 103 12839 MT_COX1 ai1 no 13084 1786 1802 33.821596 287.943765 160.8826805 2.206509294 0.139197 67 104 9336 RUF1 RUF1 yes 750 256 273 28.397577 273.02921 150.7133935 2.178151849 -0.005409 68 2 3349 Thr3 ThrTGT_i 3_flank no 272 30.150337 301.212768 165.6815525 2.219274155 -0.063736 68 3 2130 Met1 MetCAT_i tRNA yes 273 36 52 39.016442 361.123503 200.0699725 2.301181912 -0.421399 68 4 7768 snoRNA cluster1 snR76 yes 1574 636 648 56.95784 299.990504 178.474172 2.251575376 0.161888 68 5 12388 5S rRNA NTS2 no 1420 896 912 73.796792 305.104508 189.45065 2.2774961 0.212073 68 6 10755 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 661 678 155.034428 402.458109 278.7462685 2.445209062 0.071469 68 7 17121 YHR010W intron no 661 141 159 32.252973 323.416971 177.834972 2.250017171 -0.158647 68 8 4130 SRP SRP yes 875 541 555 178.045159 428.841313 303.443236 2.482077461 0.061084 68 9 374 Asn1 AsnGTT 5_flank no 274 25.761233 298.210028 161.9856305 2.209476491 -0.274827 68 10 986 Gly2 GlyCCC_ii 5_flank no 272 27.851203 302.25592 165.0535615 2.2176249 -0.171015 68 11 21910 copy of SH19563 no 401 48.880689 325.376097 187.128393 2.272139688 -0.092715 68 12 5542 snR33 5_flank/snR33 no 383 69.036912 354.211613 211.6242625 2.325565458 -0.181434 68 13 7707 snoRNA cluster1 snR77 yes 1574 331 352 46.991366 322.831405 184.9113855 2.266963653 -0.08167 68 14 13732 MT_COB exon1 yes 7308 166 186 29.935978 276.739348 153.337663 2.18564884 0.05859 68 15 1313 Ile3 IleTAT_ii 5_flank no 333 30.148455 292.833235 161.490845 2.208147907 -0.011855 68 16 16727 YGL033W 3_exon no 170 121 140 30.45708 316.15384 173.30546 2.238812245 -0.142301 68 17 9157 snR7 U5 RNA U5 yes 415 56 75 30.80602 287.699606 159.252813 2.202087112 0.043239 68 18 18488 YMR194W intron no 563 121 138 39.057805 319.278984 179.1683945 2.253261402 -0.082634 68 19 7877 snoRNA cluster1 snR73 yes 1574 1181 1200 27.343875 292.166019 159.754947 2.203454315 -0.154368 68 20 15849 YDL075W intron no 521 421 440 27.395319 316.62871 172.0120145 2.235558782 -0.25852 68 21 20546 YGR214W spliced yes 40 21 37 37.282547 297.931975 167.607261 2.224292829 0.104197 68 22 12411 5S rRNA NTS2 no 1420 1011 1028 33.088501 285.544529 159.316515 2.202260798 0.131719 68 23 5378 snR31 5_flank no 425 32.843657 309.738378 171.2910175 2.233734589 -0.044335 68 24 12528 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 316 328 30.672264 299.981465 165.3268645 2.218343429 -0.038272 68 25 14425 MT_21S 21S_rRNA3 yes 4639 586 608 26.659595 321.886062 174.2728285 2.24122968 -0.322747 68 26 11732 "rRNA(18S,5.8S,25S)" 25S yes 7956 5546 5561 6500.706763 12368.03229 9434.369529 3.974712883 -1.279278 68 27 19858 Negative Control no 60 NA #VALUE! 34.509887 295.083496 164.7966915 2.216948488 0.09594 68 28 8854 LSR1 / U2 RNA U2 yes 1375 911 925 1699.177415 2441.255621 2070.216518 3.316015769 -0.260286 68 29 987 Gly2 GlyCCC_ii 5_flank no 272 31.059082 291.366675 161.2128785 2.207399732 0.028463 68 30 20338 YER074W-A spliced yes 40 17 33 45.361497 319.791189 182.576343 2.261444504 -0.065362 68 31 20312 YER007C-A spliced yes 40 13 32 27.595986 297.604633 162.6003095 2.211121368 -0.164668 68 32 19443 YPR187W intron/exon no 176 121 137 37.886525 288.359249 163.122887 2.212514899 0.19156 68 33 21141 YNL162W spliced yes 40 13 30 29.853202 295.6218 162.737501 2.211487643 -0.039582 68 34 14838 MT_Asp 5_flank/tRNAAsp no 275 91 110 29.790289 342.39466 186.0924745 2.269728811 -0.332454 68 35 4184 telomerase RNA 5_flank no 1501 29.606152 271.082771 150.3444615 2.177087434 0.068877 68 36 20573 YHR012W spliced yes 40 5 21 45.329082 327.53698 186.433031 2.27052286 -0.128715 68 37 17319 YIL004C 5_exon no 231 1 18 40.916289 323.97845 182.4473695 2.261137606 -0.116897 68 38 9225 snR6 / U6 RNA 5_flank/U6 no 312 30.75494 295.396938 163.075939 2.212389888 -0.007106 68 39 10406 RUF8 5_flank no 1151 34.459479 307.327095 170.893287 2.232725003 -0.005135 68 40 18602 YNL069C intron no 549 201 218 32.424135 309.247834 170.8359845 2.232579355 -0.045741 68 41 12408 5S rRNA NTS2 no 1420 996 1008 44.140178 291.724483 167.9323305 2.225134315 0.181552 68 42 10022 RUF6 5_flank no 1251 36.470457 291.514835 163.992646 2.214824373 0.14889 68 43 7021 snR60 3_flank no 304 30.783365 276.380929 153.582147 2.186340735 0.103687 68 44 12167 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7721 7738 40.853558 345.691624 193.272591 2.286170269 -0.295053 68 45 11758 "rRNA(18S,5.8S,25S)" 25S yes 7956 5676 5689 37070.79619 16304.15471 26687.47545 4.426307493 0.388641 68 46 12031 "rRNA(18S,5.8S,25S)" 3_ETS/NTS1 no 7956 7041 7063 35.302791 286.409544 160.8561675 2.206437717 0.17908 68 47 721 Gln3 GlnTTG_ii 3_flank no 272 47.511458 295.797828 171.654643 2.234655555 0.153999 68 48 10854 "rRNA(18S,5.8S,25S)" 18S yes 7956 1156 1171 66.931524 321.901964 194.416744 2.288733665 0.038969 68 49 524 Cys1 CysGCA 5_flank no 272 39.697262 313.975449 176.8363555 2.247571556 -0.034349 68 50 14663 MT_21S 21S_rRNA4 yes 4639 4156 4173 31.676283 304.163235 167.919759 2.225101802 -0.030127 68 51 13973 MT_COB bi3 no 7308 3781 3807 29.648461 301.610296 165.6293785 2.219137372 -0.083692 68 52 17446 YIL148W 5_exon no 534 21 37 49.710399 328.366275 189.038337 2.276549888 -0.112457 68 53 8511 snR19 / U1 RNA U1 yes 868 51 72 29.419146 306.233922 167.826534 2.224860625 -0.119811 68 54 4743 snR4 3_flank no 386 37.175357 306.257088 171.7162225 2.234811326 0.029202 68 55 6437 snR45 snR45 yes 372 31 50 31.003908 306.684548 168.844228 2.227486219 -0.06773 68 56 20106 YDL061C spliced yes 40 21 40 36.718927 334.364293 185.54161 2.268441321 -0.217264 68 57 18343 YML124C intron no 398 181 197 32.664294 285.953906 159.3091 2.202240584 0.115608 68 58 12087 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7321 7338 42.380575 293.235902 167.8082385 2.224813279 0.162563 68 59 7111 snR63 snR63 yes 455 61 78 36.471811 308.239504 172.3556575 2.236425544 0.00943 68 60 9667 RUF4 RUF4 yes 988 111 127 33.51175 296.409543 164.9606465 2.21738035 0.072707 68 61 18775 YNL265C exon/intron no 205 41 57 30.54107 301.256829 165.8989495 2.219843636 -0.05056 68 62 7174 snR64 5_flank no 301 28.53798 290.594564 159.566272 2.202941099 -0.080773 68 63 20594 YHR039C-A spliced yes 40 13 29 51.829664 358.240725 205.0351945 2.311828415 -0.324883 68 64 5496 snR32 snR32 yes 388 141 160 28.481119 281.235917 154.858518 2.189935099 -0.040281 68 65 11191 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2841 2856 65.672001 313.663865 189.667933 2.277993911 0.095593 68 66 9469 RUF2 RUF2 yes 468 186 203 34.523846 313.974389 174.2491175 2.241170587 -0.057246 68 67 5325 snR30 snR30 yes 801 476 488 102.344711 330.846933 216.595822 2.335650075 0.192884 68 68 11511 "rRNA(18S,5.8S,25S)" 25S yes 7956 4441 4458 9116.435668 9862.862024 9489.648846 3.977250142 -0.489858 68 69 7872 snoRNA cluster1 snR73 yes 1574 1156 1168 82.248881 323.647088 202.9479845 2.307384743 0.120239 68 70 19298 YPL198W 5_exon no 509 21 37 42.490471 309.457653 175.974062 2.245448659 0.01426 68 71 5272 snR30 snR30 yes 801 211 225 61.944557 321.20427 191.5744135 2.282337505 0.014673 68 72 7874 snoRNA cluster1 snR73 yes 1574 1166 1183 29.655853 318.763545 174.209699 2.24107233 -0.185274 68 73 15377 YBL027W intron no 484 301 320 29.676757 312.85524 171.2659985 2.233671151 -0.150092 68 74 12697 MT_ORF 8 ORF8 yes 491 121 143 29.658882 299.494396 164.576639 2.216368189 -0.070363 68 75 15342 YAL030W 3_exon no 213 181 198 62.056256 349.160853 205.6085545 2.31304118 -0.1932 68 76 12533 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 391 410 29.643237 301.093661 165.368449 2.218452653 -0.08072 68 77 15074 MT_COX 2; ORF1 ORF1exon1 yes 2427 1711 1732 31.744795 320.735542 176.2401685 2.246104899 -0.144647 68 78 7272 snR65 3_flank no 300 29.89935 277.912235 153.9057925 2.187254966 0.051056 68 79 12747 MT_COX1 ai1 no 13084 406 422 54.861512 348.444204 201.652858 2.304604382 -0.234486 68 80 5992 snR36 3_flank no 555 28.375 273.036934 150.705967 2.178130448 -0.006683 68 81 3613 Val1 ValAAC_i tRNA yes 274 60 72 98.498447 340.99766 219.7480535 2.341925037 0.100875 68 82 19675 SIR1 2.4 SIR1 2.4 yes 401 221 236 82.551792 326.858217 204.7050045 2.31112846 0.098942 68 83 12007 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6921 6943 28.844941 293.077001 160.960971 2.206720583 -0.075477 68 84 2272 Phe2 PheGAA_ii 5_flank no 292 30.881564 291.237977 161.0597705 2.206987076 0.023291 68 85 3710 Val3 ValCAC tRNA yes 273 31 45 64.297855 307.716946 186.0074005 2.269530223 0.136445 68 86 17151 YHR012W intron no 219 81 95 37.728335 298.125473 167.926904 2.225120281 0.10574 68 87 20420 YGL031C spliced yes 40 1 18 38.400833 310.369713 174.385273 2.241509806 -0.005108 68 88 17429 YIL133C intron no 390 61 81 29.871613 315.86463 172.8681215 2.237714913 -0.160884 68 89 9796 RUF4 RUF4 yes 988 756 772 33.529719 324.531557 179.030638 2.252927359 -0.151074 68 90 21569 copy of SH5384 no 425 39.051742 342.558845 190.8052935 2.280590419 -0.276506 68 91 3113 Ser4 SerGCT 5_flank no 301 32.653855 301.82585 167.2398525 2.223339776 0.015815 68 92 16159 YDR129C intron no 211 101 120 30.274755 301.608169 165.941462 2.219954912 -0.061851 68 93 16797 YGL137W 5_exon no 300 21 37 43.192261 320.960209 182.076235 2.260253264 -0.083514 68 94 18817 YNL302C intron no 651 161 178 37.934167 316.056365 176.995266 2.247961651 -0.056954 68 95 6615 snR48 5_flank no 313 34.720254 317.545687 176.1329705 2.24584066 -0.082848 68 96 7001 snR60 snR60 yes 304 86 101 34.400523 282.540225 158.470374 2.199948083 0.191799 68 97 3993 RNase MRP 3_flank no 540 28.679402 290.270774 159.475088 2.20269285 -0.071607 68 98 19573 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 161 177 44.953324 353.934611 199.4439675 2.299820905 -0.335372 68 99 6274 snR42 snR42 yes 551 151 173 30.273329 289.638245 159.955787 2.203999957 0.01266 68 100 10171 RUF6 RUF6 yes 1251 701 713 34.777372 268.948328 151.86285 2.181451546 0.293949 68 101 14833 MT_Asp 5_flank no 275 16 38 28.422963 350.867021 189.644992 2.277941379 -0.412316 68 102 2291 Phe2 PheGAA_ii intron/tRNA no 292 i14 48 269.673216 388.328137 329.0006765 2.517196791 0.632561 68 103 21185 YOL047C spliced yes 40 17 34 30.269402 329.739621 180.0045115 2.25528339 -0.232775 68 104 9530 RUF3 RUF3 yes 631 36 50 32.111314 318.050063 175.0806885 2.243238246 -0.119115 69 2 16649 YFR031C intron no 247 101 117 50.862616 296.352952 173.607784 2.239569194 0.163684 69 3 4711 snR4 snR4 yes 386 91 108 30.203175 319.768263 174.985719 2.243002606 -0.171972 69 4 19127 YPL075W intron no 851 61 78 32.211661 291.560477 161.886069 2.209209477 0.065287 69 5 11906 "rRNA(18S,5.8S,25S)" 25S yes 7956 6416 6434 60.857798 352.391357 206.6245775 2.315181979 -0.224088 69 6 6702 snR49 snR49 yes 365 36 52 51.04204 311.181788 181.111914 2.25794702 0.035658 69 7 1212 Ile1 IleAAT tRNA yes 274 20:A 32 63.848902 295.305328 179.577115 2.25425099 0.238043 69 8 21925 copy of SH20400 no 40 34.367552 274.657274 154.512413 2.188963375 0.242897 69 9 4826 snR8 5_flank no 390 31.100952 276.209007 153.6549795 2.186546639 0.120463 69 10 14582 MT_21S intronic no 4639 2941 2962 29.471684 289.017531 159.2446075 2.202064735 -0.023504 69 11 1508 Leu3 LeuCAA_iii tRNA yes 314 11 22 50.33932 288.208155 169.2737375 2.228589583 0.23471 69 12 9092 snR14 / U4 RNA U4 yes 360 76 92 57.940872 301.81462 179.877746 2.254977437 0.151273 69 13 8165 snoRNA cluster 3; snR70 yes 743 336 352 40.88357 295.65356 168.268565 2.226002991 0.136338 69 14 17747 YKL157W intron no 483 81 100 37.214679 345.172083 191.193381 2.281472853 -0.304213 69 15 7587 snR189 snR189 yes 389 6 25 31.754657 316.636968 174.1958125 2.241037711 -0.112735 69 16 10255 RUF6 3_flank no 1251 28.239437 295.164128 161.7017825 2.208714807 -0.117889 69 17 2075 Lys4 LysTTT_ii tRNA-intron no 296 i4 i21 30.515252 322.189111 176.3521815 2.246380836 -0.175124 69 18 5564 snR33 snR33 yes 383 106 122 32.826026 283.16216 157.994093 2.19864085 0.138829 69 19 2895 Pro8 ProTGG_vii 5_flank/tRNA no 305 120.885002 422.640125 271.7625635 2.434189631 -0.228111 69 20 11318 "rRNA(18S,5.8S,25S)" 25S yes 7956 3476 3496 1562.481204 3108.666784 2335.573994 3.368393631 -0.753028 69 21 3889 RNaseP 3_flank no 569 31.25572 286.230205 158.7429625 2.200694481 0.0678 69 22 16944 YGR027C intron no 412 241 260 27.189845 307.993714 167.5917795 2.224252712 -0.233397 69 23 3290 Thr2 ThrCGT tRNA yes 272 51 66 42.870028 300.817575 171.8438015 2.235133872 0.0932 69 24 290 Arg4 ArgCCT tRNA yes 272 46 58 61.51337 325.719691 193.6165305 2.286942434 -0.023117 69 25 12906 MT_COX1 ai2 no 13084 2791 2811 28.825017 299.881576 164.3532965 2.215778419 -0.107114 69 26 16838 YGL178W intron no 740 541 553 77.177747 310.867521 194.022634 2.287852396 0.185916 69 27 13758 MT_COB intronic no 7308 556 580 28.926013 321.177094 175.0515535 2.243165969 -0.225182 69 28 11720 "rRNA(18S,5.8S,25S)" 25S yes 7956 5486 5499 118.70797 350.837894 234.772932 2.370648024 0.159965 69 29 18386 YMR116C intron no 373 221 237 31.282898 248.284255 139.7835765 2.145456148 0.271455 69 30 8583 snR19 / U1 RNA U1 yes 868 411 426 37.547864 297.916714 167.732289 2.224616674 0.10726 69 31 11243 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3101 3118 14260.26039 15362.52664 14811.39352 4.170595921 -0.681454 69 32 10321 RUF7 RUF7 yes 700 216 233 31.893314 296.340808 164.117061 2.215153731 0.024973 69 33 7999 snoRNA cluster 2 intergenic no 739 231 250 29.910586 318.423522 174.167054 2.240966006 -0.174378 69 34 9875 RUF5-1 RUF5-1 yes 975 181 197 32.866944 274.294354 153.580649 2.186336498 0.198712 69 35 19810 Negative Control no 60 NA #VALUE! 35.660836 261.721612 148.691224 2.172285337 0.370294 69 36 618 Gln1 GlnCTG 3_flank no 272 43.297676 394.444413 218.8710445 2.34018831 -0.628066 69 37 13591 MT_ATP8/AAP1 5_flank no 347 1 29 32.926287 313.379198 173.1527425 2.238429375 -0.072174 69 38 7750 snoRNA cluster1 intergenic/snR76 no 1574 546 563 61.017086 332.328879 196.6729825 2.293744704 -0.076801 69 39 8397 snoRNA cluster 5 snR190 yes 586 151 167 30.379199 320.785298 175.5822485 2.244480606 -0.17175 69 40 7088 snR63 5_flank no 455 34.10729 281.643043 157.8751665 2.198313822 0.188715 69 41 20418 YGL030W spliced yes 40 17 29 51.553976 314.224658 182.889317 2.262188338 0.012422 69 42 12616 MT_15S 15S yes 1848 991 1019 28.46529 305.955173 167.2102315 2.223262848 -0.153327 69 43 21727 copy of SH11922 no 7956 54.149983 298.585476 176.3677295 2.246419124 0.159254 69 44 9046 snR17a / U3a 3_flank no 690 28.936515 331.91416 180.4253375 2.256297526 -0.285348 69 45 6842 snR52 3_flank no 292 83.970732 335.170224 209.570478 2.321330104 0.049258 69 46 13553 MT_COX1 intronic no 13084 12496 12510 33.402589 264.442982 148.9227855 2.172961151 0.282935 69 47 6084 snR37 snR37 yes 586 336 355 29.56513 311.697813 170.6314715 2.232059136 -0.147203 69 48 14593 MT_21S Sce1 no 4639 3106 3132 33.697169 371.574733 202.635951 2.306716499 -0.519934 69 49 15015 MT_COX 2; ORF1 COX2 no 2427 826 848 27.701982 308.761897 168.2319395 2.225908452 -0.207721 69 50 3 Ala1 AlaAGC 5_flank no 273 39.812998 284.738879 162.2759385 2.210254129 0.239017 69 51 19126 YPL075W exon/intron no 851 41 58 31.660145 314.614451 173.137298 2.238390636 -0.098133 69 52 1514 Leu3 LeuCAA_iii tRNA-intron no 314 i3 i18 37.547339 303.522729 170.535034 2.231813612 0.05517 69 53 8948 snR17a / U3a U3a yes 690 26 42 35.32447 287.112676 161.218573 2.207415073 0.173274 69 54 9378 RUF1 RUF1 yes 750 466 481 62.988758 329.044994 196.016876 2.292293463 -0.040341 69 55 1314 Ile3 IleTAT_ii 5_flank no 333 30.918115 323.827388 177.3727515 2.248886903 -0.179282 69 56 14245 MT_Ser tRNA yes 290 151 167 32.727025 286.220262 159.4736435 2.202688917 0.115897 69 57 15883 YDL082W intron no 465 201 222 28.739722 318.855633 173.7976775 2.240043969 -0.218573 69 58 17440 YIL133C intron no 390 281 302 30.672669 318.357592 174.5151305 2.241833086 -0.147725 69 59 18571 YNL012W intron/exon no 184 121 138 32.633448 276.916782 154.775115 2.189701135 0.173748 69 60 819 Glu1 GluCTC 3_flank no 272 34.581755 295.750061 165.165908 2.217920409 0.091225 69 61 6155 snR39B 3_flank no 296 32.579969 295.153702 163.8668355 2.214491067 0.054607 69 62 13782 MT_COB intronic no 7308 916 940 28.612369 308.617227 168.614798 2.226895687 -0.163121 69 63 15512 YBR048W intron no 611 201 216 57.835408 339.395449 198.6154285 2.298012982 -0.149115 69 64 12807 MT_COX1 ai1 no 13084 1306 1328 26.595619 296.488472 161.5420455 2.208285578 -0.217035 69 65 3487 Tyr1 TyrGTA_i 5_flank no 289 28.586729 290.018605 159.302667 2.202223047 -0.075479 69 66 10781 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 791 809 30.667666 292.699507 161.6835865 2.208665934 0.006816 69 67 3521 Tyr1 TyrGTA_i 3_flank no 289 34.799002 305.104248 169.951625 2.230325321 0.016864 69 68 898 Glu3 GluTTC_ii tRNA yes 272 1 17 2085.885118 3312.839871 2699.362495 3.431261209 -0.48674 69 69 1072 Gly3 GlyGCC 3_flank no 271 29.313981 327.295849 178.304915 2.251163315 -0.246016 69 70 754 Gln4 GlnTTG_iii tRNA yes 272 41 53 39.521434 283.545608 161.533521 2.20826266 0.250079 69 71 6219 snR40 3_flank no 297 31.620751 292.977658 162.2992045 2.210316391 0.037025 69 72 19528 CBP1 1.2 CBP1 1.2 yes 401 61 78 56.026589 367.527376 211.7769825 2.325878756 -0.361804 69 73 3831 RNaseP RNaseP yes 569 121 135 41.81564 311.152101 176.4838705 2.24670502 -0.002998 69 74 16138 YDR092W exon/intron no 368 41 60 29.658284 314.798401 172.2283425 2.236104622 -0.162142 69 75 1831 Leu8 LeuTAG_i 3_flank no 301 33.650863 284.637596 159.1442295 2.201790896 0.155174 69 76 10224 RUF6 RUF6 yes 1251 966 980 66.123441 321.549808 193.8366245 2.287435838 0.036577 69 77 12663 MT_15S 15S yes 1848 1696 1708 47.939351 315.849745 181.894548 2.259819682 -0.019049 69 78 15471 YBL087C 3_exon no 604 581 596 62.560596 282.083638 172.322117 2.236341021 0.349054 69 79 1192 Ile1 IleAAT 5_flank no 274 31.133699 313.510283 172.321991 2.236340704 -0.103897 69 80 18691 YNL112W intron no 1102 1001 1020 30.37504 311.814067 171.0945535 2.233236185 -0.119669 69 81 5805 snR35 snR35 yes 740 211 228 36.848086 317.826503 177.3372945 2.248800078 -0.075212 69 82 19790 Negative Control no 60 NA #VALUE! 37.023894 279.641758 158.332826 2.199570963 0.257888 69 83 10579 RUF8 RUF8 yes 1151 821 838 30.789023 301.194666 165.9918445 2.220086751 -0.041736 69 84 20479 YGL226C-A spliced yes 40 1 20 30.718791 305.675598 168.1971945 2.225818748 -0.07131 69 85 6254 snR42 snR42 yes 551 51 67 30.565733 284.382958 157.4743455 2.197209812 0.054656 69 86 10112 RUF6 RUF6 yes 1251 406 423 30.358619 327.122625 178.740622 2.252223265 -0.211865 69 87 6779 snR50 snR50 yes 290 71 85 85.567919 335.684185 210.626052 2.323512087 0.055844 69 88 1802 Leu8 LeuTAG_i tRNA/intron no 301 35 i13 35.932499 270.16362 153.0480595 2.184827828 0.319768 69 89 5577 snR33 snR33/3_flank no 383 29.553672 288.1558 158.854736 2.201000167 -0.015212 69 90 19360 YPR028W 5_exon no 233 1 17 31.209319 279.967362 155.5883405 2.191977049 0.106981 69 91 3150 Ser4 SerGCT 3_flank no 301 50.518588 346.90256 198.710574 2.298220978 -0.249825 69 92 20156 YDL125C spliced yes 40 21 37 32.378976 282.152981 157.2659785 2.196634781 0.131083 69 93 4749 snR5 5_flank no 404 963.730129 921.003999 942.367064 2.974220099 0.558334 69 94 6340 snR43 5_flank no 409 31.607773 270.401154 151.0044635 2.178989785 0.173878 69 95 20908 YLR316C spliced yes 40 21 38 29.424011 308.810653 169.117332 2.228188119 -0.135065 69 96 5486 snR32 snR32 yes 388 91 108 31.04946 279.837301 155.4433805 2.191572232 0.10051 69 97 21348 YPR132W spliced yes 40 9 25 44.773032 289.195773 166.9844025 2.222675907 0.207459 69 98 18320 YML085C intron no 216 101 117 30.737977 254.480066 142.6090215 2.154147 0.21133 69 99 870 Glu2 GluTTC_i 3_flank no 272 36.166584 293.493297 164.8299405 2.217036102 0.128709 69 100 12189 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7831 7849 33.340514 301.897818 167.619166 2.224323675 0.025245 69 101 9151 snR7 U5 RNA U5 yes 415 26 38 123.431533 362.357709 242.894621 2.385417897 0.116993 69 102 18066 YLR344W intron no 547 81 93 71.333908 303.286009 187.3099585 2.272560868 0.212586 69 103 4855 snR8 snR8 yes 390 56 72 107.930464 377.738194 242.834329 2.385310082 -0.067929 69 104 4969 snR9 3_flank no 387 47.165698 278.616167 162.8909325 2.21189691 0.317101 70 2 11303 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3401 3418 402.176566 533.813436 467.995001 2.670241214 0.451114 70 3 18252 YML034W intron no 226 141 162 25.118647 308.3683 166.7434735 2.222048844 -0.358126 70 4 2325 Phe3 PheGAA_iii 5_flank no 291 35.736475 302.708043 169.222259 2.228457488 0.047357 70 5 8943 snR17a / U3a U3a yes 690 1 15 32.633863 279.838392 156.2361275 2.193781466 0.154437 70 6 3090 Ser3 SerCGA 3_flank no 301 40.241912 306.839528 173.54072 2.239401395 0.031131 70 7 7089 snR63 5_flank no 455 40.912211 299.898191 170.405201 2.231482846 0.096573 70 8 8200 snoRNA cluster 3; intergenic no 743 511 528 46.168929 312.106317 179.137623 2.253186807 0.003183 70 9 14014 MT_COB intron/exon4 no 7308 4396 4414 30.937603 295.913803 163.425703 2.213320362 -0.004141 70 10 19344 YPL249C 5_exon no 337 21 39 1089.54932 1382.487025 1236.018173 3.092024856 0.057313 70 11 13456 MT_COX1 intronic no 13084 11041 11058 30.309561 287.612323 158.960942 2.201290428 0.026543 70 12 503 Asp2 AspGTC_ii 3_flank no 272 33.107164 259.458979 146.2830715 2.165194071 0.300897 70 13 2543 Pro2 ProTGG_i 5_flank no 303 31.230873 305.631717 168.431295 2.226422788 -0.053782 70 14 14129 MT_COB intronic no 7308 6121 6149 30.367158 282.238744 156.302951 2.193967178 0.054607 70 15 5885 snR35 3_flank no 740 37.160567 291.508755 164.334661 2.215729173 0.156703 70 16 7572 snR189 5_flank no 389 33.710945 281.714652 157.7127985 2.197866938 0.176042 70 17 7479 snR71 snR71 yes 290 11 27 51.560101 287.501797 169.530949 2.229248993 0.247073 70 18 14654 MT_21S 21S_rRNA4 yes 4639 4021 4037 32.593465 284.64633 158.6198975 2.200357665 0.121779 70 19 10433 RUF8 RUF8 yes 1151 91 108 36.880448 306.692813 171.7866305 2.234989361 0.024502 70 20 548 Cys1 CysGCA tRNA yes 272 41 57 35.136255 305.768833 170.452544 2.231603487 0.015481 70 21 10479 RUF8 RUF8 yes 1151 321 338 27.268606 313.621324 170.444965 2.231584177 -0.253015 70 22 18145 YLR406C intron no 449 281 298 29.225243 299.924671 164.574957 2.21636375 -0.088387 70 23 15910 YDL083C intron no 532 281 298 29.145796 288.267284 158.70654 2.200594824 -0.03732 70 24 11777 "rRNA(18S,5.8S,25S)" 25S yes 7956 5771 5786 142.945317 411.907994 277.4266555 2.443148186 -0.04244 70 25 1108 Gly4 GlyTCC tRNA yes 272 16 31 46.863704 301.911035 174.3873695 2.241515027 0.095933 70 26 3721 Val3 ValCAC 3_flank no 273 33.021827 274.16792 153.5948735 2.186376721 0.20447 70 27 14571 MT_21S 21S_rRNA3 yes 4639 2776 2794 31.146943 316.870969 174.008956 2.240571601 -0.123084 70 28 11670 "rRNA(18S,5.8S,25S)" 25S yes 7956 5236 5253 6861.236456 13579.18576 10220.21111 4.009459867 -1.36912 70 29 13404 MT_COX1 intronic no 13084 10261 10278 37.505805 311.372938 174.4393715 2.241644513 -0.016278 70 30 15046 MT_COX 2; ORF1 ORF1exon1 yes 2427 1291 1312 27.652077 296.373577 162.012827 2.2095494 -0.155993 70 31 160 Arg2 ArgACG_ii 5_flank no 273 55.279245 333.982989 194.631117 2.289212275 -0.124601 70 32 599 Gln1 GlnCTG tRNA yes 272 36 50 84.08353 314.085003 199.0842665 2.299036939 0.202914 70 33 16499 YER117W intron no 571 161 178 29.969275 317.078532 173.5239035 2.239359309 -0.164538 70 34 6617 snR48 5_flank no 313 34.951314 285.730993 160.3411535 2.205045004 0.180799 70 35 13832 MT_COB bi2 no 7308 1666 1685 29.662821 281.988099 155.82546 2.192638418 0.019328 70 36 21116 YNL096C spliced yes 40 17 33 37.328306 372.334287 204.8312965 2.311396314 -0.511557 70 37 3815 RNaseP RNaseP yes 569 41 53 32.924192 305.7827 169.353446 2.228794038 -0.011556 70 38 17540 YJL177W intron no 417 201 219 54.053995 356.785858 205.4199265 2.312642569 -0.299596 70 39 20784 YKL006W spliced yes 40 21 37 30.300163 252.835255 141.567709 2.150964204 0.196519 70 40 9458 RUF2 RUF2 yes 468 131 150 30.14403 310.759157 170.4515935 2.231601066 -0.121401 70 41 21330 YPR043W spliced yes 40 13 32 57.163227 352.322985 204.743106 2.311209287 -0.247808 70 42 11952 "rRNA(18S,5.8S,25S)" 25S yes 7956 6646 6661 27427.43287 16742.575 22085.00394 4.344097481 -0.024391 70 43 16407 YER056C intron no 497 201 218 30.570004 273.118211 151.8441075 2.181397943 0.108694 70 44 11802 "rRNA(18S,5.8S,25S)" 25S yes 7956 5896 5913 6485.807121 4982.645186 5734.226154 3.758474817 0.233483 70 45 7309 snR66 snR66 yes 286 36 53 31.248399 285.084417 158.166408 2.199114252 0.07494 70 46 20815 YKL190W spliced yes 40 5 26 29.52105 302.116782 165.818916 2.219634072 -0.091279 70 47 19947 YBL040C spliced yes 40 21 39 29.695878 290.022738 159.859308 2.203737929 -0.016353 70 48 19333 YPL218W 3_exon no 239 221 238 35.853615 312.964917 174.409266 2.241569554 -0.03464 70 49 12288 5S rRNA NTS2 no 1420 396 413 35.861145 305.023947 170.442546 2.231578013 0.029964 70 50 3475 Tyr1 TyrGTA_i 5_flank no 289 45.922603 277.937389 161.929996 2.209327305 0.319988 70 51 19329 YPL218W intron no 239 141 160 29.607254 289.927854 159.767554 2.203488586 -0.020561 70 52 16476 YER102W intron no 460 161 178 35.427723 291.760224 163.5939735 2.213767301 0.134799 70 53 12990 MT_COX1 ai2 no 13084 4051 4070 29.217592 311.096479 170.1570355 2.230849911 -0.155995 70 54 18872 YNR053C intron no 631 421 445 32.938026 320.460572 176.699299 2.247234827 -0.127249 70 55 596 Gln1 GlnCTG tRNA yes 272 21 37 34.693174 293.836828 164.265001 2.215545041 0.108597 70 56 11046 "rRNA(18S,5.8S,25S)" 18S yes 7956 2116 2134 34285.00811 17536.13126 25910.56968 4.413476962 0.171994 70 57 2385 Phe4 PheGAA_iv 5_flank no 291 34.530153 294.923649 164.726901 2.216764528 0.097522 70 58 12190 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7836 7853 42.413388 306.332262 174.372825 2.241478804 0.041845 70 59 11562 "rRNA(18S,5.8S,25S)" 25S yes 7956 4696 4711 1295.024931 5010.006934 3152.515933 3.49865729 -1.759767 70 60 1034 Gly3 GlyGCC 5_flank no 271 29.793005 324.65831 177.2256575 2.248526596 -0.214193 70 61 8648 snR19 / U1 RNA 3_flank no 868 30.758296 310.880912 170.819604 2.232537711 -0.101058 70 62 11246 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3116 3135 651.186895 779.542468 715.3646815 2.854527495 0.359221 70 63 11610 "rRNA(18S,5.8S,25S)" 25S yes 7956 4936 4951 100.788127 339.769477 220.278802 2.342972706 0.122875 70 64 5525 snR33 5_flank no 383 62.023722 294.278444 178.151083 2.250788467 0.236937 70 65 3820 RNaseP RNaseP yes 569 66 84 30.663512 294.891342 162.777427 2.211594179 -0.007061 70 66 12020 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6986 7003 74.319329 359.781881 217.050605 2.336561001 -0.182881 70 67 16587 YFL034C intron no 421 101 122 27.043275 292.567633 159.805454 2.203591597 -0.173373 70 68 13408 MT_COX1 intronic no 13084 10321 10337 39.159642 328.03126 183.595451 2.263861916 -0.157247 70 69 2329 Phe3 PheGAA_iii 5_flank no 291 47.46723 267.226287 157.3467585 2.1968578 0.432498 70 70 12230 5S rRNA NTS2 no 1420 106 118 54.834719 306.400834 180.6177765 2.256760492 0.095882 70 71 19856 Negative Control no 60 NA #VALUE! 37.781454 290.030588 163.906021 2.214594907 0.176127 70 72 15151 MT_Thr1 3_flank no 272 196 222 29.758304 320.057467 174.9078855 2.24280939 -0.189131 70 73 11875 "rRNA(18S,5.8S,25S)" 25S yes 7956 6261 6274 87.563714 370.929675 229.2466945 2.360303082 -0.161853 70 74 6800 snR52 5_flank no 292 29.719389 311.115589 170.417489 2.231514162 -0.138326 70 75 446 Asp1 AspGTC_i tRNA yes 271 52 66 35.72902 281.587018 158.658019 2.200462027 0.226015 70 76 17229 YHR077C intron no 213 61 77 35.723032 279.36886 157.545946 2.197407232 0.24549 70 77 4884 snR8 3_flank no 390 29.738114 297.067198 163.402656 2.213259111 -0.052595 70 78 6047 snR37 snR37 yes 586 151 167 269.79396 573.061053 421.4275065 2.624722879 -0.109645 70 79 7137 snR63 snR63 yes 455 191 210 32.139233 305.426035 168.782634 2.22732776 -0.022605 70 80 11677 "rRNA(18S,5.8S,25S)" 25S yes 7956 5271 5287 6677.130903 9569.142864 8123.136884 3.909723772 -0.81904 70 81 4290 telomerase RNA telomerase yes 1501 486 505 30.501008 287.484878 158.992943 2.201377848 0.034223 70 82 5155 snR13 5_flank no 324 30.603918 321.562766 176.083342 2.245718272 -0.168512 70 83 9815 RUF4 3_flank no 988 30.610925 293.651891 162.131408 2.209867154 -0.001099 70 84 6147 snR39B snR39B yes 296 76 90 87.750903 346.20869 216.9797965 2.336419298 -0.002623 70 85 15385 YBL027W 3_exon no 484 461 475 51.111853 278.649378 164.8806155 2.2171696 0.328217 70 86 1104 Gly4 GlyTCC 5_flank/tRNA no 272 42.557144 286.554627 164.5558855 2.21631342 0.227341 70 87 16038 YDL191W intron no 591 221 236 32.062859 297.445459 164.754159 2.216836387 0.023659 70 88 2528 Pro1 ProAGG 3_flank no 272 33.855656 304.560633 169.2081445 2.228421263 0.009892 70 89 15463 YBL087C intron no 604 421 440 29.561529 296.556352 163.0589405 2.212344616 -0.055646 70 90 13363 MT_COX1 intronic no 13084 9646 9666 31.265213 321.487712 176.3764625 2.246440628 -0.156739 70 91 12051 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7141 7154 34.864505 273.496708 154.1806065 2.18802975 0.265685 70 92 7535 snR79 snR79 yes 284 16 33 32.516825 324.802042 178.6594335 2.252025953 -0.165834 70 93 16528 YER131W intron no 461 181 193 59.23253 342.528551 200.8805405 2.302937868 -0.16383 70 94 14588 MT_21S Sce1 no 4639 3031 3043 31.814313 267.240099 149.527206 2.174720218 0.199657 70 95 6046 snR37 snR37 yes 586 146 162 91.099818 348.199986 219.649902 2.341731014 0.006533 70 96 636 Gln2 GlnTTG_i 5_flank no 272 27.593394 322.374753 174.9840735 2.242998522 -0.281286 70 97 5439 snR31 3_flank no 425 34.940407 345.314616 190.1275115 2.279044964 -0.311836 70 98 20791 YKL156W spliced yes 40 1 20 36.696994 296.945163 166.8210785 2.222250925 0.105841 70 99 7564 snR79 3_flank no 284 29.163305 360.931325 195.047315 2.290139976 -0.471559 70 100 19706 Negative Control no 60 NA #VALUE! 30.946692 282.735078 156.840885 2.195459284 0.080045 70 101 12184 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7806 7823 49.507244 340.453565 194.9804045 2.289990967 -0.20725 70 102 21296 YPL198W spliced yes 40 5 22 38.222816 302.796469 170.5096425 2.231748944 0.063491 70 103 8381 snoRNA cluster 5 5_flank no 586 71 92 30.707123 310.710844 170.7089835 2.232256376 -0.101789 70 104 12786 MT_COX1 ai1 no 13084 991 1008 41.84299 346.201536 194.022263 2.287851566 -0.294666 71 2 11393 "rRNA(18S,5.8S,25S)" 25S yes 7956 3851 3868 41956.75717 18065.51142 30011.1343 4.47728241 0.370038 71 3 4464 telomerase RNA 3_flank no 1501 35.740237 356.990046 196.3651415 2.293064395 -0.402313 71 4 12312 5S rRNA NTS2 no 1420 516 530 37.723387 270.833132 154.2782595 2.188304731 0.344736 71 5 17491 YJL041W 5_exon no 218 1 15 57.614874 313.224641 185.4197575 2.268156009 0.05354 71 6 2117 Met1 MetCAT_i 5_flank no 273 31.451221 303.109579 167.2804 2.223445058 -0.031184 71 7 20253 YDR381W spliced yes 40 5 19 48.239039 317.553328 182.8961835 2.262204643 -0.031718 71 8 8011 snoRNA cluster 2 intergenic no 739 291 312 26.890125 275.092417 150.991271 2.178951841 -0.108906 71 9 21636 copy of SH8141 no 743 381.522056 1250.608971 816.0655135 2.911725025 -1.07875 71 10 21126 YNL130C spliced yes 40 5 22 29.224584 297.803259 163.5139215 2.213554734 -0.076463 71 11 15161 MT_Val 5_flank/tRNA no 276 91 111 31.145648 299.220614 165.183131 2.217965694 -0.017604 71 12 5730 snR34 3_flank no 750 86.242085 354.458146 220.3501155 2.343113282 -0.066877 71 13 17732 YKL156W intron no 450 221 238 40.435938 308.537214 174.486576 2.24176202 0.016153 71 14 3949 RNase MRP RNaseMRP yes 540 161 173 62.140275 315.010946 188.5756105 2.275485522 0.065028 71 15 10209 RUF6 RUF6 yes 1251 891 905 65.345614 347.966098 206.655856 2.315247716 -0.163095 71 16 3019 Ser2 SerAGA_ii tRNA yes 282 46 59 64.065827 299.531355 181.798591 2.259590513 0.203326 71 17 12462 5S rRNA 5S yes 1420 1266 1281 23407.24662 18602.86319 21005.0549 4.322323821 -0.393452 71 18 4716 snR4 snR4 yes 386 116 130 67.725982 346.059592 206.892787 2.31574535 -0.134546 71 19 10622 RUF8 3_flank no 1151 34.820831 289.010757 161.915794 2.209289214 0.151044 71 20 4094 SRP SRP yes 875 361 375 35.118668 288.927143 162.0229055 2.209576416 0.155286 71 21 16007 YDL137W intron no 432 221 236 69.431196 433.003963 251.2175795 2.400050027 -0.654071 71 22 8699 LSR1 / U2 RNA U2 yes 1375 136 148 162.792719 549.266083 356.029401 2.551485864 -0.512213 71 23 8376 snoRNA cluster 5 5_flank no 586 46 65 29.284921 323.363982 176.3244515 2.246312542 -0.2248 71 24 875 Glu2 GluTTC_i 3_flank no 272 37.200149 305.121022 171.1605855 2.233403763 0.039647 71 25 11718 "rRNA(18S,5.8S,25S)" 25S yes 7956 5476 5492 772.438757 1012.492743 892.46575 2.950591558 0.128905 71 26 11146 "rRNA(18S,5.8S,25S)" 18S yes 7956 2616 2633 17479.93126 23710.61219 20595.27172 4.313767526 -1.153914 71 27 20872 YLR128W spliced yes 40 17 39 33.362698 335.547385 184.4550415 2.26589053 -0.235885 71 28 5844 snR35 snR35 yes 740 406 425 31.502679 314.912887 173.207783 2.238567403 -0.102541 71 29 10585 RUF8 RUF8 yes 1151 851 867 43.779685 291.655701 167.717693 2.22457888 0.181031 71 30 5215 snR30 5_flank no 801 31.815452 287.186481 159.5009665 2.202763319 0.080194 71 31 21428 Tyr1_2 spliced yes 40 5 17 50.324585 313.228966 181.7767755 2.259538395 0.014872 71 32 3621 Val1 ValAAC_i 3_flank no 274 30.01365 303.148332 166.580991 2.221625441 -0.080274 71 33 18681 YNL112W intron no 1102 801 820 32.064692 275.723078 153.893885 2.187221363 0.163342 71 34 11196 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2866 2888 27.90541 305.062906 166.484158 2.221372914 -0.180303 71 35 6196 snR40 snR40 yes 297 41 56 35.782397 270.561605 153.172001 2.185179386 0.312686 71 36 9178 snR7 U5 RNA U5 yes 415 161 179 35.411012 312.583358 173.997185 2.240542222 -0.035767 71 37 11425 "rRNA(18S,5.8S,25S)" 25S yes 7956 4011 4026 768.650232 861.456947 815.0535895 2.911186164 0.391674 71 38 15295 MT_9S 9S/3_flank no 701 601 629 31.623852 304.568353 168.0961025 2.225557644 -0.034308 71 39 3246 Thr1 ThrAGT 3_flank no 273 32.279812 319.259728 175.76977 2.244944184 -0.126329 71 40 13650 MT_ATP6 ATP6 yes 980 556 572 34.02207 263.888766 148.955418 2.173056305 0.305987 71 41 7884 snoRNA cluster1 snR73 yes 1574 1216 1228 74.731965 330.410546 202.5712555 2.30657782 0.023993 71 42 1580 Leu4 LeuCAA_iv intron/tRNA no 314 i32 e21 87.437591 351.429173 219.433382 2.341302697 -0.039028 71 43 21168 YNL302C spliced yes 40 21 35 52.17786 291.62533 171.901595 2.235279906 0.212405 71 44 4754 snR5 5_flank no 404 30.993858 302.177837 166.5858475 2.221638103 -0.040812 71 45 7245 snR65 snR65 yes 300 1 23 31.360494 299.865558 165.613026 2.219094492 -0.014389 71 46 4357 telomerase RNA telomerase yes 1501 821 840 27.62882 297.617288 162.623054 2.211182113 -0.162877 71 47 21408 Ser3 spliced yes 40 9 25 31.830483 276.119143 153.974813 2.187449685 0.153044 71 48 14056 MT_COB bi4 no 7308 5026 5054 29.860563 343.537826 186.6991945 2.271142444 -0.339715 71 49 21728 copy of SH11923 no 7956 62.412718 322.040995 192.2268565 2.283814064 0.010782 71 50 13110 MT_COX1 ai3 no 13084 5851 5872 27.684174 298.072623 162.8783985 2.21186349 -0.161802 71 51 1733 Leu7 LeuTAA 5_flank no 284 31.518767 281.233913 156.37634 2.194171044 0.108974 71 52 18389 YMR116C intron no 373 281 300 29.290168 294.161361 161.7257645 2.208779213 -0.056595 71 53 18857 YNR053C intron no 631 121 140 27.076338 316.060227 171.5682825 2.234437004 -0.274324 71 54 4987 snR10 5_flank no 445 32.731633 296.838647 164.78514 2.216918045 0.048976 71 55 7230 snR65 5_flank no 300 32.542744 299.593716 166.06823 2.220286557 0.025922 71 56 21143 YNL162W spliced yes 40 21 37 36.350244 292.608882 164.479563 2.216111943 0.138265 71 57 15661 YBR189W intron no 513 361 382 30.545328 334.972202 182.758765 2.261878215 -0.267927 71 58 15560 YBR082C intron/exon no 195 141 157 74.907642 333.94457 204.426106 2.310536356 -0.000386 71 59 18138 YLR406C intron no 449 141 160 28.826196 281.889485 155.3578405 2.191333176 -0.02466 71 60 6321 snR42 3_flank no 551 34.821411 293.91411 164.3677605 2.215816638 0.109474 71 61 15601 YBR089C 3_exon no 214 181 196 32.888042 304.96294 168.925491 2.22769519 -0.005377 71 62 7900 snoRNA cluster1 intergenic no 1574 1296 1312 34.829666 276.260847 155.5452565 2.191856771 0.246126 71 63 19142 YPL075W intron no 851 361 377 83.099404 343.495908 213.297656 2.328986083 -0.01392 71 64 1305 Ile3 IleTAT_ii 5_flank no 333 32.785324 299.777112 166.281218 2.220843197 0.032551 71 65 3009 Ser2 SerAGA_ii tRNA yes 282 6 19 392.598035 519.258865 455.92845 2.658896693 0.47306 71 66 7829 snoRNA cluster1 intergenic no 1574 941 957 32.957698 282.480515 157.7191065 2.197884308 0.147446 71 67 10155 RUF6 RUF6 yes 1251 621 641 29.178014 306.007193 167.5926035 2.224254848 -0.127041 71 68 9862 RUF5-1 RUF5-1 yes 975 116 134 33.364027 311.33876 172.3513935 2.236414799 -0.050562 71 69 13032 MT_COX1 ai2 no 13084 4681 4703 29.562975 305.279653 167.421314 2.223810746 -0.108972 71 70 9224 snR6 / U6 RNA 5_flank/U6 no 312 29.72712 287.132339 158.4297295 2.199836681 -0.001381 71 71 12418 5S rRNA NTS2 no 1420 1046 1063 31.868943 294.806939 163.337941 2.213087077 0.03373 71 72 21684 copy of SH10239 no 1251 31.923863 288.717573 160.320718 2.204989649 0.073956 71 73 2398 Phe4 PheGAA_iv intron/tRNA no 291 i4 39 35.978378 331.142599 183.5604885 2.263779205 -0.192072 71 74 13566 MT_COX1 exon6 yes 13084 12691 12709 30.840779 319.620045 175.230412 2.243609482 -0.149304 71 75 18005 YLR287C intron no 530 281 296 50.082127 309.7211 179.9016135 2.255035058 0.043416 71 76 3169 Ser5 SerTGA 5_flank no 282 33.793361 294.255883 164.024622 2.214909046 0.094194 71 77 9849 RUF5-1 RUF5-1 yes 975 51 69 31.822126 296.475243 164.1486845 2.215237407 0.021805 71 78 10061 RUF6 RUF6 yes 1251 151 172 27.889449 310.327422 169.1084355 2.228165272 -0.203976 71 79 9310 RUF1 RUF1 yes 750 126 142 34.176099 286.438509 160.307304 2.20495331 0.159735 71 80 17652 YJR145C intron no 356 281 300 38.49072 294.65333 166.572025 2.221602065 0.1403 71 81 19082 YOR293W intron no 537 401 422 30.385671 289.776659 160.081165 2.204340236 0.015648 71 82 21603 copy of SH6674 no 313 32.507785 297.889578 165.1986815 2.218006577 0.035303 71 83 956 Gly1 GlyCCC_i tRNA yes 272 31 45 46.99753 308.096376 177.546953 2.249313223 0.041687 71 84 21243 YOR312C spliced yes 40 17 35 30.335148 311.379593 170.8573705 2.232633718 -0.118474 71 85 11435 "rRNA(18S,5.8S,25S)" 25S yes 7956 4061 4078 45.646014 310.498949 178.0724815 2.250596811 0.015248 71 86 17233 YHR077C intron no 213 141 158 30.07784 284.457674 157.267757 2.196639693 0.029305 71 87 15382 YBL027W intron no 484 401 420 31.959817 351.89951 191.9296635 2.283142102 -0.372757 71 88 18511 YMR201C 5_exon no 184 21 33 64.328277 296.100252 180.2142645 2.255789164 0.233916 71 89 12738 MT_COX1 ai1 no 13084 271 283 47.682381 273.376357 160.529369 2.205554499 0.37073 71 90 12352 5S rRNA NTS2 no 1420 716 734 33.29783 315.950844 174.624337 2.24210477 -0.087726 71 91 15211 MT_COX3 cox3 no 1010 586 606 31.003004 301.986553 166.4947785 2.221400618 -0.039338 71 92 17831 YKR094C intron no 468 61 78 34.579139 291.997668 163.2884035 2.212955343 0.12275 71 93 8636 snR19 / U1 RNA 3_flank no 868 32.280347 304.540177 168.410262 2.226368551 -0.012682 71 94 7992 snoRNA cluster 2 intergenic no 739 196 215 28.151626 279.3353 153.743463 2.186796659 -0.049331 71 95 4530 U3b (snR17b) U3b yes 662 206 220 73.89247 330.628436 202.260453 2.305910976 0.016915 71 96 15553 YBR082C 5_exon no 195 1 19 33.466329 265.330263 149.398296 2.174345644 0.278759 71 97 250 Arg3 ArgCCG 3_flank no 272 28.647025 306.647476 167.6472505 2.224396435 -0.150068 71 98 3320 Thr3 ThrTGT_i 5_flank no 272 27.643935 255.641411 141.642673 2.151194114 0.021832 71 99 1230 Ile1 IleAAT 3_flank no 274 33.216288 417.62896 225.422624 2.352997501 -0.843075 71 100 3960 RNase MRP RNaseMRP yes 540 216 232 35.014953 256.379896 145.6974245 2.163451875 0.389174 71 101 1151 His1 HisGTG 5_flank no 272 29.296908 275.866594 152.581751 2.183502594 0.029267 71 102 13833 MT_COB bi2 no 7308 1681 1702 31.06306 302.589978 166.826519 2.222265088 -0.040993 71 103 13263 MT_COX1 ai4 no 13084 8146 8167 29.084792 311.8682 170.476496 2.23166451 -0.165314 71 104 20999 YML085C spliced yes 40 13 30 32.719579 287.877736 160.2986575 2.204929885 0.105028 72 2 13658 MT_ATP6 ATP6 yes 980 676 694 30.644684 292.337008 161.490846 2.20814791 0.008315 72 3 14457 MT_21S 21S_rRNA3 yes 4639 1066 1088 25.52609 352.628998 189.077544 2.276639952 -0.527761 72 4 19979 YBL087C spliced yes 40 25 37 55.783588 296.282869 176.0332285 2.245594654 0.187899 72 5 12645 MT_15S 15S yes 1848 1426 1452 27.71805 334.706878 181.212464 2.258188066 -0.345697 72 6 405 Asn1 AsnGTT 3_flank no 274 29.830784 328.63938 179.235082 2.253423019 -0.235309 72 7 14692 MT_21S 3_flank no 4639 4591 4615 28.409526 332.214354 180.31194 2.256024486 -0.306205 72 8 7956 snoRNA cluster 2 5_flank no 739 16 33 32.427088 291.760236 162.093662 2.209766034 0.070986 72 9 15399 YBL050W intron no 216 81 100 29.041289 281.308178 155.1747335 2.190821008 -0.01036 72 10 9635 RUF4 5_flank no 988 29.202326 279.513007 154.3576665 2.188528205 0.006757 72 11 7330 snR66 3_flank no 286 32.971958 289.813521 161.3927395 2.207883993 0.100712 72 12 604 Gln1 GlnCTG tRNA/3_flank no 272 71.408325 314.99035 193.1993375 2.286005633 0.11964 72 13 12498 MT_tRNA Pro tRNA yes 272 121 135 34.787225 315.044664 174.9159445 2.242829399 -0.062509 72 14 3488 Tyr1 TyrGTA_i 5_flank no 289 29.25807 283.86209 156.56008 2.194681035 -0.01084 72 15 15984 YDL136W intron no 505 261 279 33.169042 302.906967 168.0380045 2.225407516 0.014863 72 16 15009 MT_COX 2; ORF1 COX2 no 2427 736 752 35.389734 325.236209 180.3129715 2.25602697 -0.143292 72 17 16810 YGL137W 3_exon no 300 281 298 32.01432 326.583164 179.298742 2.253577242 -0.185798 72 18 11782 "rRNA(18S,5.8S,25S)" 25S yes 7956 5796 5811 10589.32041 8191.56471 9390.44256 3.972686061 0.002101 72 19 12870 MT_COX1 ai1 no 13084 2251 2268 28.964099 293.669697 161.316898 2.207679862 -0.071761 72 20 288 Arg4 ArgCCT tRNA yes 272 36 50 139.912267 420.770862 280.3415645 2.447687493 -0.103993 72 21 9127 snR7 U5 RNA 5_flank no 415 29.418117 316.912327 173.165222 2.238460674 -0.182955 72 22 486 Asp2 AspGTC_ii 5_flank/tRNA no 272 31.475067 267.164493 149.31978 2.174117341 0.183376 72 23 494 Asp2 AspGTC_ii tRNA yes 272 31 43 61.690577 297.767287 179.728932 2.254617994 0.20483 72 24 16683 YGL030W intron no 330 121 140 29.426605 313.665346 171.5459755 2.234380534 -0.163693 72 25 17739 YKL156W intron no 450 361 382 29.42162 280.517232 154.969426 2.190246024 0.013606 72 26 14665 MT_21S 21S_rRNA4 yes 4639 4186 4202 41.500274 282.289873 161.8950735 2.209233633 0.266942 72 27 5231 snR30 snR30 yes 801 6 22 35.574708 337.169827 186.3722675 2.270381289 -0.243501 72 28 6079 snR37 snR37 yes 586 311 328 31.675268 288.151966 159.913617 2.203885446 0.069403 72 29 21031 YMR116C spliced yes 40 21 37 31.806616 283.149155 157.4778855 2.197219575 0.105971 72 30 20201 YDR025W spliced yes 40 9 25 36.001283 281.676476 158.8388795 2.200956815 0.228373 72 31 5071 snR11 5_flank no 458 32.046797 287.54968 159.7982385 2.203571988 0.085432 72 32 7036 snR62 5_flank no 300 48.519181 289.302674 168.9109275 2.227657747 0.217889 72 33 15798 YDL061C intron no 509 101 115 86.478569 367.779046 227.1288075 2.356272221 -0.149738 72 34 6713 snR49 snR49 yes 365 91 109 42.240499 311.501247 176.870873 2.247656319 -0.004635 72 35 15229 MT_COX3 cox3 no 1010 856 877 31.829056 265.437724 148.63339 2.172116383 0.209388 72 36 9695 RUF4 RUF4 yes 988 251 271 29.523282 336.476853 183.0000675 2.26245125 -0.293095 72 37 9859 RUF5-1 RUF5-1 yes 975 101 122 33.150063 335.925144 184.5376035 2.266084876 -0.241064 72 38 12185 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7811 7828 42.601846 345.811512 194.206679 2.288264162 -0.287276 72 39 5099 snR11 snR11 yes 458 96 117 30.523846 289.681772 160.102809 2.204398952 0.020989 72 40 16238 YDR381W intron no 866 661 673 52.681484 312.944775 182.8131295 2.262007383 0.02929 72 41 13391 MT_COX1 intronic no 13084 10066 10094 28.417982 335.870194 182.144088 2.26041508 -0.326044 72 42 9561 RUF3 RUF3 yes 631 191 207 32.440328 254.52633 143.483329 2.156801444 0.294841 72 43 21088 YNL012W spliced yes 40 1 16 55.415326 336.033862 195.724594 2.291645401 -0.139203 72 44 11433 "rRNA(18S,5.8S,25S)" 25S yes 7956 4051 4067 378.456399 604.809451 491.632925 2.69164096 0.163046 72 45 724 Gln3 GlnTTG_ii 3_flank no 272 31.491618 275.093049 153.2923335 2.185520435 0.14525 72 46 7789 snoRNA cluster1 snR75 yes 1574 741 762 29.740904 319.598382 174.669643 2.242217433 -0.187099 72 47 6476 snR45 3_flank no 372 29.875732 303.683738 166.779735 2.222143279 -0.088332 72 48 16774 YGL103W intron no 611 161 177 33.946946 293.051115 163.4990305 2.213515182 0.10621 72 49 3471 Trp1 TrpCCA 3_flank no 306 35.864063 269.33721 152.6006365 2.183556345 0.323418 72 50 21610 copy of SH7091 no 455 31.62483 299.460545 165.5426875 2.218910001 -0.003136 72 51 1566 Leu4 LeuCAA_iv tRNA yes 314 1 13 112.012899 337.307647 224.660273 2.351526282 0.207216 72 52 17200 YHR021C intron/exon no 650 581 601 35.055915 497.563052 266.3094835 2.425386632 -1.291923 72 53 5565 snR33 snR33 yes 383 111 127 29.836953 277.902517 153.869735 2.187153206 0.047857 72 54 4025 SRP SRP yes 875 16 31 36.422829 298.01962 167.2212245 2.223291399 0.09381 72 55 5257 snR30 snR30 yes 801 136 148 36.246021 282.773408 159.5097145 2.202787138 0.221573 72 56 10912 "rRNA(18S,5.8S,25S)" 18S yes 7956 1446 1459 65.477037 308.567586 187.0223115 2.27189342 0.135951 72 57 17885 YLR048W intron no 459 221 238 34.373522 318.477213 176.4253675 2.246561031 -0.094243 72 58 3657 Val2 ValAAC_ii tRNA yes 274 25 40 58.159283 288.41315 173.2862165 2.23876402 0.269963 72 59 14993 MT_COX 2; ORF1 COX2 no 2427 496 515 32.828216 298.38988 165.609048 2.219084061 0.042456 72 60 12349 5S rRNA NTS2 no 1420 701 715 99.125452 306.806375 202.9659135 2.307423108 0.346635 72 61 11223 "rRNA(18S,5.8S,25S)" ITS1 no 7956 3001 3023 29.127332 313.023606 171.075469 2.233187739 -0.170596 72 62 21050 YMR143W spliced yes 40 1 13 53.031087 294.28233 173.6567085 2.239691565 0.192447 72 63 1741 Leu7 LeuTAA tRNA yes 284 1 13 48684.30671 12395.15256 30539.72963 4.484865188 1.177624 72 64 3952 RNase MRP RNaseMRP yes 540 176 192 35.033348 279.452298 157.242823 2.196570832 0.231067 72 65 11346 "rRNA(18S,5.8S,25S)" 25S yes 7956 3616 3633 37.059941 297.124202 167.0920715 2.222955843 0.108427 72 66 5170 snR13 snR13 yes 324 6 27 31.210733 304.239064 167.7248985 2.224597538 -0.046047 72 67 21465 copy of SH1001 no 272 43.387996 283.780851 163.5844235 2.213741948 0.256285 72 68 12837 MT_COX1 ai1 no 13084 1756 1778 31.562025 352.179192 191.8706085 2.283008453 -0.378165 72 69 15300 MT_9S 3_flank no 701 676 690 35.804176 288.493028 162.148602 2.209913209 0.167006 72 70 16202 YDR381C intron no 294 221 237 38.031414 289.543536 163.787475 2.214280688 0.183011 72 71 13221 MT_COX1 ai4 no 13084 7516 7535 30.001541 327.100295 178.550918 2.251762087 -0.220706 72 72 1853 Leu9 LeuTAG_ii tRNA yes 301 6 19 2013.750809 1352.681056 1683.215933 3.226139833 0.892515 72 73 10 Ala1 AlaAGC 5_flank no 273 32.053557 316.995292 174.5244245 2.241856215 -0.111651 72 74 5240 snR30 snR30 yes 801 51 65 101.113564 353.732357 227.4229605 2.356834309 0.0347 72 75 18356 YMR033W exon/intron no 186 41 58 27.839613 288.346951 158.093282 2.198913415 -0.108929 72 76 20725 YJL177W spliced yes 40 9 23 48.139454 331.822284 189.980869 2.27870987 -0.148254 72 77 16688 YGL030W intron no 330 221 241 29.854552 295.520395 162.6874735 2.211354115 -0.038903 72 78 12998 MT_COX1 ai2 no 13084 4171 4188 31.978253 327.593921 179.786087 2.25475608 -0.193901 72 79 11298 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3376 3394 30.069484 291.192089 160.6307865 2.205828786 -0.004246 72 80 21458 copy of SH634 no 272 30.188032 322.060445 176.1242385 2.245819128 -0.185647 72 81 11702 "rRNA(18S,5.8S,25S)" 25S yes 7956 5396 5411 13430.25517 8838.472263 11134.36372 4.046665404 0.16537 72 82 17485 YJL024C intron no 177 61 78 34.387418 286.95961 160.673514 2.205944292 0.162825 72 83 4925 snR9 snR9 yes 387 31 47 32.279555 275.292154 153.7858545 2.18691639 0.173195 72 84 20367 YER133W spliced yes 40 9 26 34.238203 324.532043 179.385123 2.253786423 -0.14242 72 85 9797 RUF4 RUF4 yes 988 761 778 32.084068 291.723467 161.9037675 2.209256955 0.060113 72 86 13844 MT_COB bi2 no 7308 1846 1867 29.944291 309.803254 169.8737725 2.230126332 -0.122671 72 87 8372 snoRNA cluster 5 5_flank no 586 26 45 29.840407 296.124037 162.982222 2.212140234 -0.043155 72 88 19303 YPL198W intron no 509 121 140 31.735831 320.069233 175.902532 2.245272091 -0.139625 72 89 21799 copy of SH15069 no 2427 29.56026 313.679515 171.6198875 2.234567613 -0.159044 72 90 11819 "rRNA(18S,5.8S,25S)" 25S yes 7956 5981 5998 39.333727 271.800594 155.5671605 2.191917925 0.353232 72 91 18635 YNL096C intron no 445 321 340 37.00414 319.680629 178.3423845 2.251254569 -0.091079 72 92 10059 RUF6 RUF6 yes 1251 141 163 30.755482 320.012799 175.3841405 2.243990319 -0.154457 72 93 18558 YMR292W exon/intron no 182 41 57 32.381481 304.448388 168.4149345 2.226380601 -0.008861 72 94 1721 Leu7 LeuTAA 5_flank no 284 34.013741 305.855286 169.9345135 2.230281593 0.001338 72 95 3841 RNaseP RNaseP yes 569 171 185 53.933304 301.343609 177.6384565 2.249536991 0.134046 72 96 12930 MT_COX1 ai2 no 13084 3151 3167 33.635187 293.732 163.6835935 2.214005151 0.096655 72 97 4837 snR8 5_flank no 390 31.656736 296.804286 164.230511 2.215453844 0.014321 72 98 21317 YPL249C-A spliced yes 40 9 25 41.101183 260.703954 150.9025685 2.178696632 0.474445 72 99 4447 telomerase RNA telomerase yes 1501 1271 1283 403.677683 1025.560275 714.618979 2.854074546 -0.674619 72 100 7529 snR79 5_flank/snR79 no 284 31.482289 259.923176 145.7027325 2.163467697 0.220324 72 101 9412 RUF2 5_flank no 468 31.381973 305.891756 168.6368645 2.226952519 -0.050308 72 102 19720 Negative Control no 60 NA #VALUE! 33.148815 282.222466 157.6856405 2.197792146 0.155167 72 103 16146 YDR092W intron no 368 201 216 44.383289 291.594855 167.989072 2.225281031 0.183553 72 104 8840 LSR1 / U2 RNA U2 yes 1375 841 856 1457.981508 842.309376 1150.145442 3.060752763 1.224322 73 2 14949 MT_Met tRNA yes 276 106 127 27.300936 281.150867 154.2259015 2.188157318 -0.106375 73 3 15748 YCR031C exon/intron no 407 41 57 32.741883 327.965522 180.3537025 2.256125062 -0.186932 73 4 20645 YHR203C spliced yes 40 17 33 38.271972 291.715601 164.9937865 2.217467589 0.167152 73 5 20977 YML056C spliced yes 40 1 13 91.027112 343.857914 217.442513 2.337344459 0.034797 73 6 8326 snoRNA cluster4 intergenic no 638 416 433 31.759515 291.338692 161.5491035 2.208304552 0.051927 73 7 20071 YCR028C-A spliced yes 40 9 25 30.303801 290.838386 160.5710935 2.205667365 0.006097 73 8 11938 "rRNA(18S,5.8S,25S)" 25S yes 7956 6576 6589 83.096537 342.60064 212.8485885 2.328070775 -0.007818 73 9 10528 RUF8 RUF8 yes 1151 566 583 34.592638 253.262295 143.9274665 2.158143681 0.399029 73 10 13939 MT_COB bi3 no 7308 3271 3293 27.331147 320.958323 174.144735 2.240910349 -0.28315 73 11 14541 MT_21S 21S_rRNA3 yes 4639 2326 2350 25.519404 301.479395 163.4993995 2.213516162 -0.303684 73 12 12661 MT_15S 15S yes 1848 1666 1685 27.367063 311.672091 169.519577 2.22921986 -0.239112 73 13 19525 CBP1 1.2 CBP1 1.2 yes 401 1 17 31.083341 296.896444 163.9898925 2.214817081 -0.005338 73 14 2356 Phe3 PheGAA_iii 3_flank no 291 31.158796 277.515828 154.337312 2.188470932 0.117065 73 15 974 Gly1 GlyCCC_i 3_flank no 272 35.112707 321.096563 178.104635 2.250675222 -0.108218 73 16 7966 snoRNA cluster 2 5_flank no 739 66 83 29.788978 286.981443 158.3852105 2.199714626 0.002549 73 17 4930 snR9 snR9 yes 387 56 71 41.767677 315.763283 178.76548 2.252283659 -0.043513 73 18 5366 snR30 3_flank no 801 29.687163 274.79464 152.2409015 2.182531347 0.055012 73 19 4176 telomerase RNA 5_flank no 1501 33.075288 284.039533 158.5574105 2.200186544 0.141032 73 20 12887 MT_COX1 ai1 no 13084 2506 2526 29.430888 321.709821 175.5703545 2.244451186 -0.210165 73 21 11067 "rRNA(18S,5.8S,25S)" 18S yes 7956 2221 2240 279.295587 585.330973 432.31328 2.635798577 -0.112605 73 22 19098 YOR312C intron no 507 181 197 35.73937 301.887971 168.8136705 2.227407613 0.054095 73 23 5481 snR32 snR32 yes 388 66 82 58.052668 326.392123 192.2223955 2.283803985 -0.048998 73 24 8260 snoRNA cluster4 5_flank/snR67 no 638 86 104 29.635293 296.411339 163.023316 2.212249723 -0.052143 73 25 5491 snR32 snR32 yes 388 116 131 58.960213 322.191768 190.5759905 2.280068186 -0.010711 73 26 20795 YKL156W spliced yes 40 17 36 31.658427 302.050884 166.8546555 2.222338329 -0.017885 73 27 15993 YDL136W intron/exon no 505 441 458 31.73049 295.085167 163.4078285 2.213272859 0.027446 73 28 17636 YJR094W intron/exon no 375 321 335 56.25204 341.528207 198.8901235 2.298613217 -0.174862 73 29 4722 snR4 snR4 yes 386 146 161 27.880067 291.086703 159.483385 2.202715445 -0.119266 73 30 15010 MT_COX 2; ORF1 COX2 no 2427 751 767 36.118773 299.602606 167.8606895 2.224949003 0.077247 73 31 12019 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6981 6999 67.093272 364.824382 215.958827 2.33437096 -0.266147 73 32 9906 RUF5-1 RUF5-1 yes 975 336 355 28.096337 297.518121 162.807229 2.211673685 -0.136361 73 33 20909 YLR333C spliced yes 40 1 20 30.139818 306.90783 168.523824 2.226661305 -0.098586 73 34 2331 Phe3 PheGAA_iii 5_flank/tRNA no 291 30.066087 325.508778 177.7874325 2.249901058 -0.209482 73 35 21235 YOR293W spliced yes 40 13 29 33.964783 282.751636 158.3582095 2.199640583 0.17711 73 36 3417 Trp1 TrpCCA 5_flank no 306 33.690976 314.494839 174.0929075 2.240781078 -0.07145 73 37 19442 YPR187W intron no 176 101 120 29.373593 304.380508 166.8770505 2.222396615 -0.110252 73 38 6612 snR47 3_flank no 299 35.011331 265.979868 150.4955995 2.177523801 0.321384 73 39 2218 Phe1 PheGAA_i 5_flank no 292 66.329496 316.626076 191.477786 2.282118397 0.075936 73 40 21863 copy of SH18013 no 530 28.710114 284.79893 156.754522 2.195220078 -0.044603 73 41 2743 Pro5 ProTGG_iv tRNA/3_flank no 303 40.421498 298.253531 169.3375145 2.228753181 0.110836 73 42 11788 "rRNA(18S,5.8S,25S)" 25S yes 7956 5826 5839 20267.45106 17654.23064 18960.84085 4.277857593 -0.482751 73 43 7670 snoRNA cluster1 snR78 yes 1574 146 163 33.00255 279.045218 156.023884 2.193191085 0.171395 73 44 8872 LSR1 / U2 RNA U2 yes 1375 1001 1017 148.186911 418.073655 283.130283 2.451986323 -0.044122 73 45 7094 snR63 5_flank no 455 31.631337 266.005243 148.81829 2.17265631 0.196862 73 46 8857 LSR1 / U2 RNA U2 yes 1375 926 941 189.440049 447.888931 318.66449 2.503333671 0.029471 73 47 2432 Phe5 PheGAA_v 5_flank no 291 33.967911 275.773592 154.8707515 2.189969406 0.223215 73 48 15365 YBL027W intron no 484 61 80 29.864311 325.950899 177.907605 2.250194513 -0.219013 73 49 5941 snR36 snR36 yes 555 161 178 29.720234 301.972922 165.846578 2.219706515 -0.08338 73 50 17851 YKR095W 5_exon no 175 1 20 37.52422 335.635983 186.5801015 2.270865325 -0.225889 73 51 2404 Phe4 PheGAA_iv tRNA yes 291 53 69 41.174829 306.111703 173.643266 2.239657946 0.039859 73 52 16268 YDR447C exon/intron no 414 41 58 30.924836 311.612006 171.268421 2.233677294 -0.099744 73 53 1927 Lys1 LysCTT_i 3_flank no 272 34.553264 344.08063 189.316947 2.277189492 -0.302851 73 54 12196 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7866 7886 30.441613 320.938814 175.6902135 2.244747571 -0.170488 73 55 2292 Phe2 PheGAA_ii intron/tRNA no 292 i19 51 173.02019 384.294756 278.657473 2.445070694 0.258052 73 56 11260 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3186 3201 63.450664 301.226721 182.3386925 2.260878836 0.185611 73 57 1908 Lys1 LysCTT_i 5_flank/tRNA no 272 34.404821 286.79771 160.6012655 2.205748963 0.164392 73 58 15895 YDL082W 3_exon no 465 441 460 30.748808 301.81452 166.281664 2.220844362 -0.046886 73 59 1008 Gly2 GlyCCC_ii tRNA yes 272 31 45 95.162266 313.066894 204.11458 2.309874028 0.27684 73 60 10247 RUF6 3_flank no 1251 31.203546 295.808818 163.506182 2.213534178 0.00545 73 61 2355 Phe3 PheGAA_iii 3_flank no 291 32.32185 313.087145 172.7044975 2.237303647 -0.077542 73 62 3387 Thr4 ThrTGT_ii tRNA yes 272 21 35 35.359867 276.779629 156.069748 2.193318729 0.258448 73 63 8873 LSR1 / U2 RNA U2 yes 1375 1006 1022 47.384347 322.633243 185.008795 2.267192375 -0.078003 73 64 13467 MT_COX1 intronic no 13084 11206 11225 29.341421 295.029441 162.185431 2.210011839 -0.057802 73 65 21695 copy of SH10660 no 7956 35.359524 284.767296 160.06341 2.204292065 0.193956 73 66 1206 Ile1 IleAAT 5_flank/tRNA no 274 35.453265 301.279098 168.3661815 2.226254862 0.055756 73 67 10011 RUF6 5_flank no 1251 33.59381 320.36659 176.9802 2.247924682 -0.118362 73 68 8299 snoRNA cluster4 intergenic no 638 281 298 39.854601 280.531302 160.1929515 2.204643403 0.280544 73 69 3801 RNaseP 5_flank no 569 73.975565 297.751893 185.863729 2.269194646 0.273246 73 70 11891 "rRNA(18S,5.8S,25S)" 25S yes 7956 6341 6358 190.821711 454.681787 322.751749 2.508868604 0.006061 73 71 12558 MT_15S 15S yes 1848 121 138 38.332797 326.995818 182.6643075 2.261653695 -0.151074 73 72 2403 Phe4 PheGAA_iv tRNA yes 291 48 62 40.417378 277.701114 159.059246 2.201558919 0.31032 73 73 37 Ala1 AlaAGC 3_flank no 273 30.103033 270.150962 150.1269975 2.176458799 0.099322 73 74 18795 YNL301C intron no 532 241 257 30.011891 303.73302 166.8724555 2.222384657 -0.083883 73 75 2200 Met2 MetCAT_ii 3_flank no 272 40.107362 286.892883 163.5001225 2.213518082 0.218632 73 76 19864 Negative Control no 60 NA #VALUE! 44.117849 297.821711 170.96978 2.232919353 0.124741 73 77 3879 RNaseP Rnasep/3_flank no 569 114.883526 338.518863 226.7011945 2.355453808 0.215741 73 78 3021 Ser2 SerAGA_ii tRNA yes 282 57 71 38.094014 284.040808 161.067411 2.207007678 0.231112 73 79 17529 YJL136C 3_exon no 560 541 557 48.47035 313.652677 181.0615135 2.257826146 0.002083 73 80 7198 snR64 snR64 yes 301 56 75 32.158847 290.695439 161.427143 2.207976561 0.069044 73 81 12129 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7531 7549 32.193765 291.695353 161.944559 2.209366361 0.063855 73 82 20321 YER056C-A spliced yes 40 1 18 48.609311 316.547873 182.578592 2.261449854 -0.021469 73 83 17655 YKL002W 5_exon no 168 1 17 40.290937 318.9501 179.6205185 2.254355946 -0.076184 73 84 10131 RUF6 RUF6 yes 1251 501 517 33.037361 285.228734 159.1330475 2.20176038 0.132141 73 85 7958 snoRNA cluster 2 5_flank no 739 26 47 31.936183 291.661914 161.7990485 2.208975963 0.055678 73 86 15682 YBR191W intron no 488 281 302 27.816201 311.727856 169.7720285 2.229866138 -0.214058 73 87 18658 YNL112W intron no 1102 341 360 31.797396 298.936741 165.3670685 2.218449028 0.00577 73 88 13190 MT_COX1 exon4 yes 13084 7051 7072 31.710623 338.667832 185.1892275 2.26761572 -0.279541 73 89 9747 RUF4 RUF4 yes 988 511 527 35.601195 287.514227 161.557711 2.208327691 0.173051 73 90 17398 YIL069C intron no 509 301 317 43.399531 293.893449 168.64649 2.226977307 0.158823 73 91 14764 MT_ORF11; Leu; Gln ORF11 yes 716 346 374 33.103976 306.067325 169.5856505 2.229389102 -0.011601 73 92 6784 snR50 3_flank no 290 30.816693 288.953265 159.884979 2.203807664 0.035595 73 93 3198 Ser5 SerTGA 3_flank no 282 32.446556 292.686839 162.5666975 2.211031583 0.065775 73 94 6277 snR42 snR42 yes 551 166 185 30.230162 311.23344 170.731801 2.232314422 -0.12123 73 95 1357 Ile3 IleTAT_ii 3_flank no 333 41.528056 307.013636 174.270846 2.241224739 0.032747 73 96 2348 Phe3 PheGAA_iii tRNA yes 291 48 62 47.108514 280.767768 163.938141 2.214680006 0.295827 73 97 20142 YDL108W spliced yes 40 17 34 982.216868 1013.148829 997.6828485 2.998992506 0.425652 73 98 2476 Phe5 PheGAA_v 3_flank no 291 28.85799 239.081164 133.969577 2.127006186 0.172612 73 99 116 Arg1 ArgACG_i 5_flank no 273 37.363591 283.294902 160.3292465 2.205012752 0.229594 73 100 17934 YLR093C intron no 241 81 102 37.282099 375.659135 206.470617 2.314858256 -0.536118 73 101 1553 Leu4 LeuCAA_iv 5_flank no 314 31.484683 315.852236 173.6684595 2.239720952 -0.110138 73 102 18924 YOL121C intron no 490 141 157 33.254347 317.62407 175.4392085 2.244126659 -0.10132 73 103 16318 YDR471W intron no 484 121 138 30.298049 326.65315 178.4755995 2.251578849 -0.209142 73 104 12755 MT_COX1 ai1 no 13084 526 542 33.020425 298.46184 165.7411325 2.219430302 0.048108 74 2 8886 LSR1 / U2 RNA U2 yes 1375 1071 1090 32.651051 306.441188 169.5461195 2.229287854 -0.020322 74 3 19469 ADH1 ADH1 yes 400 81 97 34.595465 334.898113 184.746789 2.266576899 -0.22716 74 4 4049 SRP SRP yes 875 136 153 37.483235 272.865236 155.1742355 2.190819614 0.323618 74 5 7704 snoRNA cluster1 intergenic/snR77 no 1574 316 333 29.72531 305.395112 167.560211 2.224170899 -0.10395 74 6 7902 snoRNA cluster1 intergenic no 1574 1306 1325 28.211507 310.911006 169.5612565 2.229326626 -0.191488 74 7 26 Ala1 AlaAGC tRNA yes 273 26 40 50.389558 292.512723 171.4511405 2.234140378 0.19582 74 8 11738 "rRNA(18S,5.8S,25S)" 25S yes 7956 5576 5597 32.445627 334.238842 183.3422345 2.26326252 -0.23752 74 9 1159 His1 HisGTG tRNA yes 272 15 31 32.697659 260.66043 146.6790445 2.166368072 0.275406 74 10 2250 Phe1 PheGAA_i 3_flank no 292 29.14765 303.585135 166.3663925 2.221065599 -0.113498 74 11 16243 YDR381W intron no 866 761 782 29.212667 293.618412 161.4155395 2.207945342 -0.058251 74 12 8777 LSR1 / U2 RNA U2 yes 1375 526 542 32.957719 279.530063 156.243891 2.193803046 0.166779 74 13 15715 YBR220C intron/exon no 521 461 483 34.86745 297.630937 166.2491935 2.220759547 0.078965 74 14 3985 RNase MRP 3_flank no 540 31.254661 282.432797 156.843729 2.195467159 0.092355 74 15 12523 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 241 269 33.376891 332.507129 182.94201 2.262313446 -0.212966 74 16 11815 "rRNA(18S,5.8S,25S)" 25S yes 7956 5961 5976 715.312407 1132.534765 923.923586 2.965636054 -0.151081 74 17 1373 Leu1 LeuCAA_i 5_flank no 315 34.268527 290.609853 162.43919 2.210690815 0.130788 74 18 17629 YJR094W intron no 375 181 197 44.689759 320.842084 182.7659215 2.26189522 -0.07765 74 19 20360 YER131W spliced yes 40 5 24 46.352331 335.101285 190.726808 2.28041174 -0.183503 74 20 7266 snR65 3_flank no 300 29.674413 281.483144 155.5787785 2.191950357 0.022322 74 21 8565 snR19 / U1 RNA U1 yes 868 321 338 33.929517 325.716372 179.8229445 2.254845105 -0.155172 74 22 17163 YHR016C intron no 268 101 118 31.971487 302.415463 167.193475 2.223219324 -0.009831 74 23 12517 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 151 168 33.985009 287.713409 160.849209 2.20641893 0.145703 74 24 13750 MT_COB exon1 yes 7308 436 455 27.843002 311.669184 169.756093 2.229825371 -0.212311 74 25 21386 Phe1_5 spliced yes 40 5 17 42.012615 294.217159 168.114887 2.225606173 0.152433 74 26 20846 YLR048W spliced yes 40 9 25 33.883727 274.623867 154.253797 2.188235863 0.228316 74 27 12689 MT_ORF 8 5_flank no 491 1 29 27.846283 317.2059 172.5260915 2.236854784 -0.241999 74 28 3239 Thr1 ThrAGT tRNA yes 273 51 67 31.967799 312.474726 172.2212625 2.236086769 -0.077264 74 29 11302 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3396 3414 38.16847 318.783933 178.4762015 2.251580314 -0.080402 74 30 2178 Met2 MetCAT_ii tRNA yes 272 21 33 36.212171 275.937073 156.074622 2.193332292 0.281667 74 31 19238 YPL090C intron no 494 321 338 30.144854 286.721369 158.4331115 2.199845951 0.022208 74 32 3981 RNase MRP RNaseMRP yes 540 321 336 32.2337 283.083056 157.658378 2.197717054 0.120329 74 33 16089 YDR025W intron no 439 321 342 32.237184 321.020897 176.6290405 2.24706211 -0.140472 74 34 127 Arg1 ArgACG_i tRNA yes 273 11 23 52.7264 294.889363 173.8078815 2.240069466 0.185592 74 35 3014 Ser2 SerAGA_ii tRNA yes 282 31 e14 30.013121 278.207638 154.1103795 2.18783189 0.055542 74 36 4866 snR8 snR8 yes 390 111 123 35.902799 315.844652 175.8737255 2.245200963 -0.060107 74 37 11481 "rRNA(18S,5.8S,25S)" 25S yes 7956 4291 4304 123.693891 384.407191 254.050541 2.404920124 -0.00847 74 38 3187 Ser5 SerTGA tRNA yes 282 46 61 125.691006 359.144969 242.4179875 2.384564841 0.149477 74 39 18472 YMR143W intron no 644 441 460 29.175656 325.240918 177.208287 2.248484027 -0.239359 74 40 18449 YMR142C 3_exon no 502 481 497 43.90683 273.259233 158.5830315 2.200256716 0.362934 74 41 13856 MT_COB bi2 no 7308 2026 2047 29.056312 314.774457 171.9153845 2.235314743 -0.183415 74 42 21627 copy of SH7732 no 1574 35.096532 310.123216 172.609874 2.237065636 -0.019933 74 43 14044 MT_COB bi4 no 7308 4846 4868 29.33311 324.337211 176.8351605 2.247568621 -0.228616 74 44 9209 snR6 / U6 RNA 5_flank no 312 62.898531 334.47843 198.6884805 2.298172688 -0.081601 74 45 9370 RUF1 RUF1 yes 750 426 443 33.80062 266.042053 149.9213365 2.175863445 0.284205 74 46 13723 MT_COB 5_flank no 7308 31 57 29.886471 331.945601 180.916036 2.257477063 -0.254525 74 47 16059 YDL219W intron no 171 61 77 33.973467 293.96871 163.9710885 2.21476728 0.098808 74 48 2450 Phe5 PheGAA_v tRNA yes 291 21 33 57.311599 322.824507 190.068053 2.278909126 -0.025794 74 49 19731 Negative Control no 60 NA #VALUE! 35.677245 272.832523 154.254884 2.188238924 0.294224 74 50 14871 MT_Ser2; Arg2 3_flank no 360 331 350 31.383482 315.690033 173.5367575 2.239391478 -0.110202 74 51 21134 YNL147W spliced yes 40 9 21 91.533098 344.300795 217.9169465 2.338291005 0.035148 74 52 3592 Val1 ValAAC_i 5_flank no 274 30.803864 285.32742 158.065642 2.19883748 0.05841 74 53 9445 RUF2 RUF2 yes 468 66 78 67.787761 283.729271 175.758516 2.244916377 0.360521 74 54 10904 "rRNA(18S,5.8S,25S)" 18S yes 7956 1406 1426 6813.055964 10561.959 8687.507481 3.938895192 -0.959012 74 55 4950 snR9 snR9 yes 387 156 172 75.208643 348.238375 211.723509 2.325769083 -0.098975 74 56 17344 YIL018W intron no 500 281 297 38.226755 320.429378 179.3280665 2.253648266 -0.094647 74 57 16334 YDR471W 3_exon no 484 441 457 42.404549 281.617208 162.0108785 2.209544177 0.275576 74 58 16020 YDL189W intron no 199 61 78 33.888625 318.857416 176.3730205 2.246432153 -0.103074 74 59 13316 MT_COX1 ai5a no 13084 8941 8962 29.223347 312.16066 170.6920035 2.232213176 -0.162077 74 60 6891 snR56 snR56/3_flank no 288 31.429695 303.731093 167.580394 2.224223207 -0.03567 74 61 2389 Phe4 PheGAA_iv 5_flank/tRNA no 291 33.574194 312.148096 172.861145 2.237697385 -0.054378 74 62 905 Glu3 GluTTC_ii tRNA yes 272 36 49 364.292156 472.354637 418.3233965 2.621512155 0.56058 74 63 5838 snR35 snR35 yes 740 376 390 85.119621 355.152533 220.136077 2.342691223 -0.079156 74 64 4478 U3b (snR17b) 5_flank no 662 31.592201 291.945715 161.768958 2.208895188 0.042579 74 65 15937 YDL115C intron no 189 101 117 33.619727 280.678878 157.1493025 2.196312458 0.179994 74 66 20245 YDR367W spliced yes 40 17 36 31.668761 315.7983 173.7335305 2.239883645 -0.107302 74 67 6507 snR46 snR46 yes 397 26 43 33.801837 298.353094 166.0774655 2.220310708 0.060124 74 68 17942 YLR128W 5_exon no 194 1 22 31.918019 348.846671 190.382345 2.279626672 -0.350024 74 69 19686 Negative Control no 60 NA #VALUE! 30.022724 290.241494 160.132109 2.204478424 -0.000349 74 70 12324 5S rRNA NTS2 no 1420 576 593 31.155905 298.055047 164.605476 2.216444279 -0.010074 74 71 18371 YMR079W intron no 256 161 179 30.190224 294.115517 162.1528705 2.209924641 -0.018454 74 72 1572 Leu4 LeuCAA_iv tRNA/intron no 314 30 i12 26.085384 321.163872 173.624628 2.239611328 -0.353588 74 73 9708 RUF4 RUF4 yes 988 316 332 30.105073 288.503715 159.304394 2.202227755 0.011904 74 74 20625 YHR101C spliced yes 40 17 33 32.034299 304.36569 168.1999945 2.225825977 -0.019617 74 75 15900 YDL083C intron no 532 81 98 33.960416 335.372653 184.6665345 2.266388199 -0.232808 74 76 20801 YKL157W spliced yes 40 21 37 33.899404 289.953445 161.9264245 2.209317726 0.12879 74 77 16942 YGR027C intron no 412 201 217 33.911184 284.010704 158.960944 2.201290433 0.167281 74 78 11036 "rRNA(18S,5.8S,25S)" 18S yes 7956 2066 2083 46.229791 308.398186 177.3139885 2.248742999 0.03568 74 79 17146 YHR010W 3_exon no 661 641 658 29.994149 321.274187 175.634168 2.244609008 -0.187874 74 80 20092 YDL012C spliced yes 40 21 36 36.181877 260.939625 148.560751 2.171904086 0.39095 74 81 14971 MT_COX 2; ORF1 COX2 no 2427 166 185 30.064107 307.729862 168.8969845 2.227621896 -0.106138 74 82 10418 RUF8 RUF8 yes 1151 16 33 36.151299 309.970596 173.0609475 2.238199077 -0.007024 74 83 17098 YHL001W intron no 498 341 353 157.251466 377.391201 267.3213335 2.427033619 0.216452 74 84 20207 YDR059C spliced yes 40 9 25 44.136554 315.740831 179.9386925 2.25512456 -0.035462 74 85 7438 snR69 snR69/3_flank no 301 35.911382 300.303743 168.1075625 2.225587251 0.069086 74 86 12899 MT_COX1 intronic no 13084 2686 2700 54.188546 298.68886 176.438703 2.246593857 0.158515 74 87 1543 Leu3 LeuCAA_iii 3_flank no 314 73.619695 300.726493 187.173094 2.272243419 0.24671 74 88 18123 YLR388W intron no 258 101 118 33.737515 322.543814 178.1406645 2.250763068 -0.133333 74 89 88 Ala2 AlaTGC 3_flank no 273 31.609803 285.034051 158.321927 2.199541067 0.087273 74 90 21396 Pro2_7 spliced yes 40 17 29 171.247124 432.700455 301.9737895 2.479969249 0.008864 74 91 13071 MT_COX1 exon3/ai3 no 13084 5266 5285 30.173711 301.356246 165.7649785 2.219492782 -0.063803 74 92 7530 snR79 5_flank/snR79 no 284 48.596587 347.858989 198.227788 2.297164535 -0.268462 74 93 6746 snR50 5_flank no 290 87.976382 330.615566 209.295974 2.320760874 0.10652 74 94 11236 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3066 3082 4052.667541 2851.527098 3452.09732 3.538083031 0.586177 74 95 11265 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3211 3229 41.512034 298.007058 169.759546 2.229834205 0.115577 74 96 11914 "rRNA(18S,5.8S,25S)" 25S yes 7956 6456 6473 29195.41147 17541.07838 23368.24492 4.368626096 -0.025292 74 97 3644 Val2 ValAAC_ii 5_flank no 274 31.724428 311.319617 171.5220225 2.234319889 -0.071359 74 98 9762 RUF4 RUF4 yes 988 586 608 33.591088 272.001202 152.796145 2.184112397 0.236926 74 99 10657 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 171 188 83.954818 301.068258 192.511538 2.284456764 0.303703 74 100 7648 snoRNA cluster1 5_flank no 1574 36 57 31.578673 268.928657 150.253665 2.176825074 0.179718 74 101 13403 MT_COX1 intronic no 13084 10246 10271 31.477687 336.18962 183.8336535 2.264425018 -0.264443 74 102 14453 MT_21S 21S_rRNA3 yes 4639 1006 1022 172.039972 381.215897 276.6279345 2.441896034 0.269622 74 103 20043 YBR189W spliced yes 40 13 27 47.389409 283.969234 165.6793215 2.219268307 0.265574 74 104 15043 MT_COX 2; ORF1 ORF1exon1 yes 2427 1246 1267 33.033468 317.985594 175.509531 2.244300706 -0.106891 75 2 5355 snR30 3_flank no 801 70.177866 298.230491 184.2041785 2.265299478 0.247192 75 3 9206 snR6 / U6 RNA 5_flank no 312 29.243158 306.627908 167.935533 2.225142597 -0.128443 75 4 15310 YAL003W 5_exon no 466 1 20 31.224089 286.436467 158.830278 2.200933296 0.065416 75 5 10933 "rRNA(18S,5.8S,25S)" 18S yes 7956 1551 1569 31.473841 329.126457 180.300149 2.255996086 -0.212019 75 6 8027 snoRNA cluster 2 snR55 yes 739 371 386 37.158821 255.702424 146.4306225 2.165631909 0.4561 75 7 11480 "rRNA(18S,5.8S,25S)" 25S yes 7956 4286 4301 7467.966684 6418.431861 6943.199273 3.84155963 -0.016891 75 8 264 Arg4 ArgCCT 5_flank no 272 36.023279 326.769653 181.396466 2.258628822 -0.154814 75 9 8620 snR19 / U1 RNA U1 yes 868 596 610 43.700843 282.35593 163.0283865 2.21226323 0.271006 75 10 4859 snR8 snR8 yes 390 76 90 119.484147 408.740491 264.112319 2.421788658 -0.165906 75 11 18041 YLR333C intron no 523 101 117 34.766877 283.793681 159.280279 2.202162008 0.194711 75 12 10638 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 76 89 72.428727 333.402428 202.9155775 2.307315388 -0.012863 75 13 18143 YLR406C intron no 449 241 257 40.584545 313.150087 176.867316 2.247647585 -0.024811 75 14 456 Asp1 AspGTC_i 3_flank no 271 38.922919 307.918632 173.4207755 2.239101124 0.018279 75 15 10465 RUF8 RUF8 yes 1151 251 270 35.473897 322.65594 179.0649185 2.253010509 -0.12082 75 16 13040 MT_COX1 ai2 no 13084 4801 4823 30.164637 292.12539 161.1450135 2.207216871 -0.006839 75 17 5376 snR31 5_flank no 425 38.451001 298.178304 168.3146525 2.226121925 0.106978 75 18 19500 YPT1 YPT1 yes 402 301 316 85.842826 345.619039 215.7309325 2.333912421 -0.010822 75 19 18819 YNL302C intron no 651 201 217 31.611537 279.208839 155.410188 2.191479486 0.125348 75 20 15384 YBL027W 3_exon no 484 441 457 29.936948 305.393965 167.6654565 2.224443596 -0.096535 75 21 15687 YBR191W intron no 488 381 400 32.183159 298.182339 165.182749 2.217964689 0.023014 75 22 18657 YNL112W intron no 1102 321 338 30.205485 317.350571 173.778028 2.239994865 -0.157919 75 23 7351 snR68 5_flank no 336 32.22932 273.144169 152.6867445 2.183801335 0.185991 75 24 2984 Ser1 SerAGA_i 3_flank no 283 32.157329 315.131099 173.644214 2.239660317 -0.095736 75 25 15759 YCR031C intron no 407 261 279 34.13074 317.975635 176.0531875 2.245643893 -0.093283 75 26 21424 Trp1 spliced yes 40 17 33 52.527658 312.75334 182.640499 2.261597085 0.030006 75 27 9649 RUF4 RUF4 yes 988 21 33 39.196656 266.821053 153.0088545 2.184716564 0.397483 75 28 1310 Ile3 IleTAT_ii 5_flank no 333 32.077703 310.283562 171.1806325 2.233454627 -0.058452 75 29 15693 YBR220C 5_exon no 521 21 37 43.379292 289.643535 166.5114135 2.221444008 0.199131 75 30 15124 MT_Phe 5_flank no 265 46 74 28.082654 321.582373 174.8325135 2.242622201 -0.258402 75 31 13895 MT_COB intronic no 7308 2611 2632 30.16959 321.941779 176.0556845 2.245650052 -0.185606 75 32 5464 snR32 5_flank no 388 36.360608 311.121277 173.7409425 2.239902173 -0.01685 75 33 8870 LSR1 / U2 RNA U2 yes 1375 991 1006 30.2227 284.576943 157.3998215 2.197004236 0.036212 75 34 17474 YJL001W intron no 216 61 78 34.298071 300.397905 167.347988 2.223620495 0.049279 75 35 3932 RNase MRP RNaseMRP yes 540 76 92 36.260234 283.219543 159.7398885 2.203413377 0.21784 75 36 14210 MT_ATP9 5_flank no 431 46 72 28.979534 318.908523 173.9440285 2.240409524 -0.210201 75 37 1690 Leu6 LeuGAG tRNA yes 282 16 30 72.68182 338.275038 205.478429 2.312766237 -0.04597 75 38 19094 YOR312C intron no 507 101 120 31.677371 314.251952 172.9646615 2.237957381 -0.095059 75 39 1906 Lys1 LysCTT_i 5_flank/tRNA no 272 33.532654 327.259297 180.3959755 2.256226845 -0.171723 75 40 17598 YJL191W 3_exon no 508 481 497 33.438766 251.412484 142.425625 2.153588134 0.358333 75 41 16735 YGL076C intron no 559 121 138 39.441136 364.604761 202.0229485 2.305400705 -0.445907 75 42 17111 YHR001W intron/exon no 163 101 121 43.560009 300.766058 172.1630335 2.235939906 0.095944 75 43 20166 YDL136W spliced yes 40 9 24 37.685376 323.627735 180.6565555 2.256853725 -0.1237 75 44 2652 Pro4 ProTGG_iii 5_flank no 302 37.874666 316.08681 176.980738 2.247926002 -0.057367 75 45 5702 snR34 snR34 yes 750 431 448 29.899116 275.700223 152.7996695 2.184122415 0.061685 75 46 13882 MT_COB intronic no 7308 2416 2442 29.954185 342.163264 186.0587245 2.269650039 -0.328511 75 47 6189 snR40 snR40 yes 297 6 22 452.043407 712.703714 582.3735605 2.76520165 0.081304 75 48 11349 "rRNA(18S,5.8S,25S)" 25S yes 7956 3631 3647 117.478238 446.590871 282.0345545 2.450302321 -0.366678 75 49 15776 YDL012C intron no 186 61 80 31.569651 285.275491 158.422571 2.199817057 0.084387 75 50 13962 MT_COB bi3 no 7308 3616 3639 31.293385 311.811987 171.552686 2.234397522 -0.088554 75 51 3601 Val1 ValAAC_i tRNA yes 274 1 15 70.775548 334.442469 202.6090085 2.306658751 -0.031569 75 52 3979 RNase MRP RNaseMRP yes 540 311 327 30.755982 284.801659 157.7788205 2.198048705 0.060181 75 53 20053 YBR220C spliced yes 40 5 21 31.543403 311.895617 171.71951 2.234819641 -0.080738 75 54 6952 snR58 3_flank no 296 36.312447 325.326164 180.8193055 2.257244797 -0.141714 75 55 18111 YLR367W intron no 583 441 462 34.407758 293.37452 163.891139 2.214555473 0.109067 75 56 4612 snR3 5_flank no 395 32.626029 285.804303 159.215166 2.201984434 0.115347 75 57 17789 YKL186C exon/intron no 249 41 57 42.755665 306.240443 174.498054 2.241790588 0.043812 75 58 10563 RUF8 RUF8 yes 1151 741 757 41.157207 282.122773 161.63999 2.208548815 0.267838 75 59 17282 YHR141C intron no 541 161 175 33.480048 280.007886 156.743967 2.195190834 0.180054 75 60 1535 Leu3 LeuCAA_iii 3_flank no 314 51.946913 281.718116 166.8325145 2.222280696 0.302555 75 61 12773 MT_COX1 ai1 no 13084 796 815 29.784225 308.70407 169.2441475 2.22851366 -0.121724 75 62 14491 MT_21S 21S_rRNA3 yes 4639 1576 1604 29.824657 308.707203 169.26593 2.228569552 -0.120326 75 63 17249 YHR097C intron no 224 81 98 31.844868 272.221054 152.032961 2.181937754 0.176557 75 64 14622 MT_21S Sce1 no 4639 3541 3558 45.041464 337.828641 191.4350525 2.282021462 -0.211947 75 65 11324 "rRNA(18S,5.8S,25S)" 25S yes 7956 3506 3522 31171.61591 11090.44973 21131.03282 4.324920725 0.816549 75 66 151 Arg1 ArgACG_i 3_flank no 273 35.935182 283.637443 159.7863125 2.203539574 0.210467 75 67 11762 "rRNA(18S,5.8S,25S)" 25S yes 7956 5696 5714 44.189512 297.858192 171.023852 2.233056684 0.124636 75 68 20634 YHR141C spliced yes 40 1 20 34.090217 326.527802 180.3090095 2.256017428 -0.159365 75 69 340 Arg5 ArgTCT tRNA yes 272 36 53 34.191949 308.121588 171.1567685 2.233394078 -0.014743 75 70 7795 snoRNA cluster1 snR75 yes 1574 771 787 36.314323 305.661351 170.987837 2.232965219 0.030005 75 71 3326 Thr3 ThrTGT_i 5_flank no 272 30.166956 275.080425 152.6236905 2.183621951 0.078539 75 72 8352 snoRNA cluster4 3_flank no 638 546 565 46.544348 359.088043 202.8161955 2.307102632 -0.363509 75 73 11496 "rRNA(18S,5.8S,25S)" 25S yes 7956 4366 4383 193.617862 393.53417 293.576016 2.467720573 0.307173 75 74 11080 "rRNA(18S,5.8S,25S)" 18S yes 7956 2286 2303 15840.49722 8907.682638 12374.08993 4.092513268 0.353824 75 75 11599 "rRNA(18S,5.8S,25S)" 25S yes 7956 4881 4898 22452.89457 15817.25479 19135.07468 4.281830161 -0.174863 75 76 19970 YBL072C spliced yes 40 13 32 104.431086 367.573062 236.002074 2.37291582 -0.030509 75 77 8273 snoRNA cluster4 snR67 yes 638 151 170 54.182316 324.683872 189.433094 2.277455853 -0.057701 75 78 5846 snR35 snR35 yes 740 416 433 31.888387 297.540253 164.71432 2.216731358 0.017375 75 79 7832 snoRNA cluster1 intergenic/snR74 no 1574 956 972 36.065438 338.636908 187.351173 2.272656417 -0.254381 75 80 1642 Leu5 LeuCAA_v tRNA yes 315 42 50 851.116073 653.428986 752.2725295 2.876375203 0.978069 75 81 17498 YJL041W intron no 218 141 160 30.039172 297.741619 163.8903955 2.214553503 -0.046252 75 82 2897 Pro8 ProTGG_vii tRNA yes 305 6 23 84.265687 355.268639 219.767163 2.341962802 -0.085419 75 83 15329 YAL003W intron no 466 381 400 29.946346 312.955792 171.451069 2.234140197 -0.14124 75 84 21694 copy of SH10659 no 7956 42.093107 289.999692 166.0463995 2.220229463 0.192949 75 85 8228 snoRNA cluster 3; 3_flank no 743 651 668 35.92491 277.674589 156.7997495 2.195345365 0.262857 75 86 9751 RUF4 RUF4 yes 988 531 545 62.434364 310.490548 186.462456 2.2705914 0.10326 75 87 13099 MT_COX1 ai3 no 13084 5686 5710 29.79185 322.319364 176.055607 2.245649861 -0.200921 75 88 20662 YIL052C spliced yes 40 9 26 37.84502 277.573484 157.709252 2.197857172 0.285317 75 89 9335 RUF1 RUF1 yes 750 251 268 33.67817 306.988794 170.333482 2.231300024 -0.011909 75 90 10680 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 286 299 148.805857 414.491527 281.648692 2.449707739 -0.022885 75 91 7120 snR63 snR63 yes 455 106 124 33.168683 273.02484 153.0967615 2.184966004 0.216796 75 92 3715 Val3 ValCAC tRNA yes 273 56 68 34.762291 265.262708 150.0124995 2.176127447 0.318901 75 93 17097 YHL001W intron no 498 321 338 42.141457 315.527101 178.834279 2.252450768 -0.040192 75 94 876 Glu2 GluTTC_i 3_flank no 272 33.988868 317.47646 175.732664 2.244852493 -0.091125 75 95 21109 YNL069C spliced yes 40 13 30 33.723346 289.819584 161.771465 2.208901918 0.124203 75 96 10291 RUF7 RUF7 yes 700 66 83 39.274373 301.944489 170.609431 2.232003035 0.073842 75 97 18836 YNL302C intron no 651 541 562 28.765818 284.213687 156.4897525 2.194485904 -0.038852 75 98 4442 telomerase RNA telomerase yes 1501 1246 1263 29.684649 224.800801 127.242725 2.104632961 0.289668 75 99 13448 MT_COX1 intronic no 13084 10921 10943 27.76498 276.601629 152.1833045 2.18236701 -0.058347 75 100 17724 YKL156W intron no 450 61 77 39.05131 317.528525 178.2899175 2.251126784 -0.067289 75 101 7719 snoRNA cluster1 snR77 yes 1574 391 408 31.387008 274.438463 152.9127355 2.184443658 0.143253 75 102 6714 snR49 snR49 yes 365 96 115 71.257008 375.933563 223.5952855 2.349462642 -0.308599 75 103 15279 MT_9S 9S yes 701 361 385 29.290707 332.409148 180.8499275 2.257318339 -0.275387 75 104 15480 YBL091C 3_exon no 188 161 178 31.082131 346.195138 188.6386345 2.275630644 -0.342156 76 2 17065 YGR214W intron no 555 441 457 32.442826 304.347329 168.3950775 2.226329392 -0.006273 76 3 10312 RUF7 RUF7 yes 700 171 193 29.133644 359.428018 194.280831 2.288429952 -0.461665 76 4 12155 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7661 7678 483.594186 1119.887447 801.7408165 2.904033994 -0.608445 76 5 21825 copy of SH16120 no 639 40.27055 303.049142 171.659846 2.234668719 0.065926 76 6 8238 snoRNA cluster 3; 3_flank no 743 701 716 44.218003 285.564769 164.891386 2.217197968 0.240506 76 7 4594 U3b (snR17b) 3_flank no 662 33.751878 309.354102 171.55299 2.234398292 -0.029972 76 8 1793 Leu8 LeuTAG_i 5_flank/tRNA no 301 45.04163 353.457223 199.2494265 2.29939708 -0.331327 76 9 7754 snoRNA cluster1 snR76 yes 1574 566 578 39.878973 281.77365 160.8263115 2.206357102 0.268417 76 10 7179 snR64 5_flank no 301 29.040423 283.353362 156.1968925 2.193672389 -0.020053 76 11 9145 snR7 U5 RNA 5_flank/U5 no 415 45.961659 308.514109 177.237884 2.248556556 0.03382 76 12 7283 snR66 5_flank no 286 31.188128 281.17529 156.181709 2.193630171 0.098346 76 13 13976 MT_COB bi3/intron no 7308 3826 3852 25.730207 281.668528 153.6993675 2.18667208 -0.213297 76 14 12984 MT_COX1 ai2 no 13084 3961 3977 41.045224 311.523421 176.2843225 2.246213691 -0.008918 76 15 13638 MT_ATP6 ATP6 yes 980 376 394 29.994174 288.174901 159.0845375 2.20162797 0.007688 76 16 11499 "rRNA(18S,5.8S,25S)" 25S yes 7956 4381 4394 54.713405 308.327626 181.5205155 2.258925716 0.078998 76 17 11344 "rRNA(18S,5.8S,25S)" 25S yes 7956 3606 3619 174.175146 484.936394 329.55577 2.51792892 -0.20391 76 18 19710 Negative Control no 60 NA #VALUE! 37.40483 293.827802 165.616316 2.21910312 0.139833 76 19 17836 YKR094C intron no 468 161 182 29.841207 309.181365 169.511286 2.229198619 -0.122573 76 20 3214 Thr1 ThrAGT 5_flank no 273 30.176835 299.309436 164.7431355 2.216807328 -0.051147 76 21 13050 MT_COX1 ai2 no 13084 4951 4968 30.379684 299.725199 165.0524415 2.217621953 -0.046707 76 22 20681 YIL111W spliced yes 40 5 25 30.452137 300.111195 165.281666 2.218224682 -0.04659 76 23 16811 YGL178W 5_exon no 740 1 22 30.425489 303.926743 167.176116 2.223174231 -0.070764 76 24 5743 snR35 5_flank no 740 63.518423 298.710562 181.1144925 2.257953203 0.207201 76 25 11445 "rRNA(18S,5.8S,25S)" 25S yes 7956 4111 4127 57.089927 324.326532 190.7082295 2.280369434 -0.038914 76 26 2390 Phe4 PheGAA_iv tRNA yes 291 1 15 88.749711 325.852131 207.300921 2.316601232 0.145282 76 27 14870 MT_Ser2; Arg2 3_flank no 360 316 343 32.164412 322.119051 177.1417315 2.248320885 -0.149847 76 28 2887 Pro8 ProTGG_vii 5_flank no 305 28.054212 300.551005 164.3026085 2.215644458 -0.152198 76 29 1469 Leu2 LeuCAA_ii 3_flank no 314 34.175027 319.651384 176.9132055 2.247760252 -0.105736 76 30 20089 YDL012C spliced yes 40 9 26 30.107331 301.260184 165.6837575 2.219279935 -0.065516 76 31 377 Asn1 AsnGTT 5_flank no 274 30.142798 304.616363 167.3795805 2.223702475 -0.084685 76 32 15820 YDL064W exon/intron no 210 41 58 71.453018 395.371155 233.4120865 2.368123341 -0.425339 76 33 14385 MT_ORF9; ORF10 3_flank no 578 541 565 28.181414 309.024685 168.6030495 2.226865425 -0.182193 76 34 10519 RUF8 RUF8 yes 1151 521 542 28.197472 294.127166 161.162319 2.207263508 -0.115514 76 35 19709 Negative Control no 60 NA #VALUE! 42.556273 277.841552 160.1989125 2.204659564 0.313616 76 36 5276 snR30 snR30 yes 801 231 247 34.252876 256.872109 145.5624925 2.163049484 0.362665 76 37 15975 YDL136W intron no 505 81 98 32.098043 324.435738 178.2668905 2.251070689 -0.168413 76 38 20961 YML025C spliced yes 40 13 31 31.977939 296.009942 163.9939405 2.214827801 0.029797 76 39 2045 Lys3 LysTTT_i 3_flank no 296 31.87342 339.541642 185.707531 2.268829516 -0.283789 76 40 9338 RUF1 RUF1 yes 750 266 283 37.885557 302.5101 170.1978285 2.230954015 0.065326 76 41 17018 YGR148C intron no 479 281 297 33.824676 279.901961 156.8633185 2.195521398 0.191444 76 42 3068 Ser3 SerCGA tRNA yes 301 36 i17 39.964145 352.030236 195.9971905 2.292249846 -0.348027 76 43 18561 YMR292W intron no 182 101 120 31.932822 262.728121 147.3304715 2.168292579 0.228108 76 44 18180 YLR448W intron no 484 381 398 29.987659 308.243093 169.115376 2.228183096 -0.111864 76 45 21598 copy of SH6474 no 372 32.079657 276.994417 154.537037 2.189032581 0.155359 76 46 8360 snoRNA cluster4 3_flank no 638 586 603 34.107739 304.73861 169.4231745 2.228972815 0.01152 76 47 21854 copy of SH17799 no 176 91.059924 318.584344 204.822134 2.311376887 0.212063 76 48 5182 snR13 snR13 yes 324 66 82 50.040786 299.734734 174.88776 2.242759415 0.12973 76 49 9510 RUF3 5_flank no 631 40.561877 306.756677 173.659277 2.239697989 0.032608 76 50 3215 Thr1 ThrAGT 5_flank no 273 31.239666 308.867355 170.0535105 2.230585602 -0.072878 76 51 20398 YFR024C-A spliced yes 40 9 26 30.975406 300.006907 165.4911565 2.218774791 -0.028159 76 52 9716 RUF4 RUF4 yes 988 356 372 36.646047 279.757935 158.201991 2.199211945 0.252614 76 53 18517 YMR201C 3_exon no 184 141 159 40.417782 331.037835 185.7278085 2.268876934 -0.17777 76 54 11144 "rRNA(18S,5.8S,25S)" 18S yes 7956 2606 2623 16164.50603 15713.86316 15939.18459 4.2024661 -0.565853 76 55 4800 snR5 snR5 yes 404 171 187 38.586999 294.354165 166.470582 2.221337498 0.143366 76 56 1032 Gly2 GlyCCC_ii 3_flank no 272 32.926144 318.09689 175.511517 2.24430562 -0.109103 76 57 11613 "rRNA(18S,5.8S,25S)" 25S yes 7956 4951 4964 138.872362 384.586596 261.729479 2.417852641 0.078373 76 58 1757 Leu7 LeuTAA tRNA/3_flank no 284 37.533661 305.900782 171.7172215 2.234813853 0.033331 76 59 5705 snR34 snR34 yes 750 446 465 29.738001 288.19925 158.9686255 2.201311419 -0.005751 76 60 15973 YDL136W exon/intron no 505 41 60 38.039814 331.989746 185.01478 2.267206424 -0.194123 76 61 12675 MT_Trp 5_flank no 274 46 74 29.992953 322.815569 176.404261 2.246509071 -0.196728 76 62 5105 snR11 snR11 yes 458 126 145 36.144033 313.365075 174.754554 2.242428502 -0.037474 76 63 672 Gln2 GlnTTG_i 3_flank no 272 30.01075 307.942277 168.9765135 2.227826345 -0.109263 76 64 17947 YLR128W intron no 194 101 117 48.408326 287.18673 167.797528 2.224785558 0.237699 76 65 10138 RUF6 RUF6 yes 1251 536 548 34.071847 284.645245 159.358546 2.202375359 0.168108 76 66 17920 YLR061W 3_exon no 489 461 475 80.283276 323.37882 201.831048 2.304987975 0.110459 76 67 19104 YOR312C intron no 507 301 316 71.2353 300.012474 185.623887 2.268633863 0.23877 76 68 5373 snR31 5_flank no 425 34.197634 329.597944 181.897789 2.25982742 -0.183643 76 69 9882 RUF5-1 RUF5-1 yes 975 216 230 49.670014 292.669605 171.1698095 2.233427167 0.190872 76 70 20306 YER003C spliced yes 40 17 29 74.537629 295.781044 185.1593365 2.267545616 0.292798 76 71 15965 YDL130W intron no 401 281 300 32.113374 300.339068 166.226221 2.220699532 0.007478 76 72 2165 Met2 MetCAT_ii 5_flank no 272 29.956866 314.203637 172.0802515 2.235731032 -0.1482 76 73 15259 MT_9S 5_flank no 701 61 89 27.787117 312.947712 170.3674145 2.231386533 -0.220884 76 74 13194 MT_COX1 exon4 yes 13084 7111 7129 35.729426 307.35253 171.540978 2.234367882 0.009645 76 75 11494 "rRNA(18S,5.8S,25S)" 25S yes 7956 4356 4373 233.502505 646.66542 440.0839625 2.643535542 -0.482939 76 76 3740 Val4 ValTAC 5_flank no 274 31.588606 309.614163 170.6013845 2.231982551 -0.065725 76 77 764 Gln4 GlnTTG_iii 3_flank no 272 29.655521 304.162609 166.909065 2.222479924 -0.098959 76 78 6048 snR37 snR37 yes 586 156 175 33.834613 310.572014 172.2033135 2.236041504 -0.038669 76 79 19627 RNA14 2.2 RNA14 2.2 yes 401 41 62 27.8954 305.503867 166.6996335 2.221934645 -0.182784 76 80 3829 RNaseP RNaseP yes 569 111 123 50.515538 293.916506 172.216022 2.236073553 0.183795 76 81 5425 snR31 snR31 yes 425 191 207 36.215035 298.433293 167.324164 2.223558664 0.088013 76 82 5983 snR36 3_flank no 555 30.073643 314.339518 172.2065805 2.236049743 -0.144934 76 83 21158 YNL301C spliced yes 40 5 21 35.136713 266.130573 150.633643 2.177921979 0.324074 76 84 20491 YGL251C spliced yes 40 1 15 75.191583 333.439628 204.3156055 2.310301539 0.005085 76 85 2462 Phe5 PheGAA_v tRNA/3_flank no 291 31.98041 296.950873 164.4656415 2.216075183 0.024034 76 86 14325 MT_VAR1 VAR1 yes 1467 1081 1105 29.921283 305.740339 167.830811 2.224871693 -0.099168 76 87 1980 Lys2 LysCTT_ii 3_flank no 273 33.959561 282.006033 157.982797 2.198609799 0.181811 76 88 18070 YLR344W intron no 547 161 177 72.790587 349.497099 211.143843 2.324578422 -0.123531 76 89 2212 Phe1 PheGAA_i 5_flank no 292 29.711283 344.320304 187.0157935 2.271878284 -0.347413 76 90 5930 snR36 snR36 yes 555 106 121 90.749301 363.030738 226.8900195 2.355815392 -0.091288 76 91 18467 YMR143W intron no 644 341 356 29.17814 267.13807 148.158105 2.170725415 0.065769 76 92 16938 YGR027C intron no 412 121 140 32.7131 315.986763 174.3499315 2.241421781 -0.095342 76 93 4750 snR5 5_flank no 404 7862.813224 4585.369211 6224.091218 3.794075949 0.606565 76 94 19311 YPL198W intron no 509 281 298 31.88008 312.825109 172.3525945 2.236417825 -0.081171 76 95 1820 Leu8 LeuTAG_i 3_flank no 301 29.709467 295.615436 162.6624515 2.211287313 -0.044582 76 96 7486 snR71 snR71 yes 290 46 66 30.504166 313.024007 171.7640865 2.234932364 -0.12237 76 97 14499 MT_21S 21S_rRNA3 yes 4639 1696 1715 1522.82564 1208.096862 1365.461251 3.13527938 0.706076 76 98 16103 YDR059C 3_exon no 190 161 173 46.475186 235.338869 140.9070275 2.148932653 0.778288 76 99 3821 RNaseP RNaseP yes 569 71 87 48.359021 312.618793 180.488907 2.256450515 0.010234 76 100 9069 snR14 / U4 RNA 5_flank no 360 31.321999 279.351927 155.336963 2.19127481 0.114797 76 101 10166 RUF6 RUF6 yes 1251 676 688 118.86271 354.070078 236.466394 2.373769429 0.140746 76 102 13666 MT_ATP6 ATP6 yes 980 796 813 32.093441 308.210792 170.1521165 2.230837356 -0.041684 76 103 21738 copy of SH12343 no 1420 86.182658 289.035237 187.6089475 2.273253547 0.41429 76 104 19067 YOR293W intron no 537 101 115 87.876314 400.390379 244.1333465 2.387627104 -0.333375 77 2 10616 RUF8 3_flank no 1151 65.982419 335.142196 200.5623075 2.302249318 -0.066424 77 3 5418 snR31 snR31 yes 425 156 172 32.523257 298.50302 165.5131385 2.218832474 0.032012 77 4 18513 YMR201C intron no 184 61 80 30.992739 278.356635 154.674687 2.189419246 0.104734 77 5 12402 5S rRNA NTS2 no 1420 966 982 52.588839 337.170024 194.8794315 2.289766004 -0.164243 77 6 12597 MT_15S 15S yes 1848 706 725 29.737353 314.25299 171.9951715 2.235516255 -0.156169 77 7 2371 Phe4 PheGAA_iv 5_flank no 291 35.426901 287.68651 161.5567055 2.208324988 0.169539 77 8 7423 snR69 snR69 yes 301 16 32 33.959405 304.660679 169.310042 2.228682717 0.010347 77 9 20890 YLR275W spliced yes 40 21 40 28.784858 285.559714 157.172286 2.19637597 -0.044115 77 10 5902 snR36 5_flank no 555 25.343214 280.488165 152.9156895 2.184452047 -0.235433 77 11 19840 Negative Control no 60 NA #VALUE! 32.963212 290.663166 161.813189 2.209013917 0.095046 77 12 20849 YLR048W spliced yes 40 21 35 72.849812 317.954873 195.4023425 2.290929766 0.104916 77 13 20322 YER056C-A spliced yes 40 5 22 68.591165 321.45838 195.0247725 2.29008978 0.052638 77 14 17825 YKR057W intron/exon no 422 361 377 31.805426 282.835682 157.320554 2.196785467 0.107971 77 15 508 Asp2 AspGTC_ii 3_flank no 272 94.745718 339.339662 217.04269 2.336545163 0.088919 77 16 3491 Tyr1 TyrGTA_i 5_flank/tRNA no 289 38.468685 281.520633 159.994659 2.204105485 0.257189 77 17 21907 copy of SH19402 no 186 77.034099 355.909526 216.4718125 2.335401353 -0.13812 77 18 6460 snR45 snR45 yes 372 146 165 31.629111 282.732222 157.1806665 2.196399126 0.10284 77 19 17077 YGR225W intron no 193 121 142 28.002149 298.741028 163.3715885 2.213176532 -0.147041 77 20 8578 snR19 / U1 RNA U1 yes 868 386 405 30.36667 317.685051 174.0258605 2.24061379 -0.154301 77 21 6082 snR37 snR37 yes 586 326 342 32.645861 303.157697 167.901779 2.225055298 0.006235 77 22 11544 "rRNA(18S,5.8S,25S)" 25S yes 7956 4606 4621 9555.616209 21933.40409 15744.51015 4.197129153 -1.762973 77 23 17853 YKR095W exon/intron no 175 41 58 34.783285 300.825118 167.8042015 2.224802831 0.051583 77 24 4813 snR5 3_flank no 404 30.530004 286.61024 158.570122 2.20022136 0.040826 77 25 12556 MT_15S 5_flank/15S no 1848 91 113 32.468301 307.520396 169.9943485 2.230434483 -0.031334 77 26 4524 U3b (snR17b) U3b yes 662 176 192 34.387535 277.601495 155.994515 2.193109328 0.223872 77 27 1641 Leu5 LeuCAA_v intron/tRNA no 315 i33 e22 86.701842 343.885954 215.293898 2.333031721 0.006346 77 28 7550 snR79 3_flank no 284 30.077234 302.932946 166.50509 2.221427514 -0.076756 77 29 14918 MT_Tyr tRNA yes 284 166 183 32.065338 281.788907 156.9271225 2.195698011 0.123297 77 30 15437 YBL072C intron no 408 301 317 30.021194 270.915363 150.4682785 2.177444952 0.09133 77 31 18982 YOR096W intron no 501 321 336 38.223331 298.058743 168.141037 2.225673722 0.107556 77 32 15321 YAL003W intron no 466 221 238 162.093796 477.869491 319.9816435 2.505125065 -0.238602 77 33 12790 MT_COX1 ai1 no 13084 1051 1068 33.276957 312.06568 172.6713185 2.237220205 -0.057408 77 34 21460 copy of SH730 no 272 61.252186 305.266942 183.259564 2.263066649 0.139338 77 35 1070 Gly3 GlyGCC 3_flank no 271 30.306686 313.529229 171.9179575 2.235321243 -0.132121 77 36 3914 RNase MRP 5_flank/RNaseMRP no 540 30.29834 249.837056 140.067698 2.146337991 0.20972 77 37 18742 YNL162W intron no 612 161 176 117.276933 369.804353 243.540643 2.386571448 0.036069 77 38 6245 snR42 snR42 yes 551 6 23 34.278879 327.202662 180.7407705 2.257056129 -0.163046 77 39 13299 MT_COX1 ai5a no 13084 8686 8705 34.202321 331.914222 183.0582715 2.262589357 -0.203197 77 40 20498 YGR001C spliced yes 40 5 22 32.109806 298.788353 165.4490795 2.218664355 0.016893 77 41 10004 RUF5-1 3_flank no 975 30.060626 303.967751 167.0141885 2.222753368 -0.083611 77 42 12098 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7376 7394 32.126439 319.581086 175.8537625 2.245151665 -0.130788 77 43 1057 Gly3 GlyGCC tRNA yes 271 22 38 37.293169 294.580169 165.936669 2.219942368 0.132276 77 44 19655 SIR1 2.2 SIR1 2.2 yes 401 221 239 30.166162 291.700209 160.9331855 2.206645608 -0.004104 77 45 17183 YHR021C intron no 650 241 258 54.854572 316.214093 185.5343325 2.268424286 0.014382 77 46 21541 copy of SH4151 no 875 30.100265 292.888899 161.494582 2.208157957 -0.013875 77 47 11958 "rRNA(18S,5.8S,25S)" 25S yes 7956 6676 6689 895.293104 1791.586556 1343.43983 3.12821822 -0.609217 77 48 8947 snR17a / U3a U3a yes 690 21 40 31.762116 286.669844 159.21598 2.201986654 0.081757 77 49 2657 Pro4 ProTGG_iii 5_flank no 302 32.486667 310.459648 171.4731575 2.234196145 -0.054608 77 50 8146 snoRNA cluster 3; intergenic no 743 241 263 31.201617 306.001737 168.601677 2.22686189 -0.056989 77 51 11093 "rRNA(18S,5.8S,25S)" 18S yes 7956 2351 2364 32.925999 280.32436 156.6251795 2.194861582 0.160549 77 52 1186 His1 HisGTG 3_flank no 272 44.541736 300.537249 172.5394925 2.236888516 0.101206 77 53 17 Ala1 AlaAGC 5_flank no 273 36.604893 305.20848 170.9066865 2.232759054 0.036969 77 54 4582 U3b (snR17b) 3_flank no 662 34.716034 305.165759 169.9408965 2.230297905 0.015378 77 55 2129 Met1 MetCAT_i tRNA yes 273 31 48 36.885399 294.602574 165.7439865 2.21943778 0.127535 77 56 4729 snR4 snR4/3_flank no 386 33.207314 303.548358 168.377836 2.226284924 0.010113 77 57 14019 MT_COB exon4 yes 7308 4471 4492 29.504799 319.584573 174.544686 2.241906631 -0.195343 77 58 15277 MT_9S 9S yes 701 331 355 27.74131 320.091683 173.9164965 2.240340778 -0.262618 77 59 10916 "rRNA(18S,5.8S,25S)" 18S yes 7956 1466 1481 1930.173084 1485.640947 1707.907016 3.232464222 0.689362 77 60 6190 snR40 snR40 yes 297 11 27 34.181836 291.130797 162.6563165 2.211270933 0.125313 77 61 14680 MT_21S 21S_rRNA4 yes 4639 4411 4439 30.155243 327.939915 179.047579 2.252968453 -0.220814 77 62 20507 YGR027C spliced yes 40 13 35 30.168611 321.726513 175.947562 2.245383253 -0.184409 77 63 19349 YPL249C intron no 337 121 138 44.542652 325.187258 184.864955 2.266854589 -0.114007 77 64 9233 snR6 / U6 RNA U6 yes 312 36 55 78.612674 331.28678 204.949727 2.311647344 0.042272 77 65 20721 YJL136C spliced yes 40 17 37 32.198003 294.700679 163.449341 2.213383174 0.04512 77 66 2244 Phe1 PheGAA_i 3_flank no 292 36.315682 293.47552 164.895601 2.21720907 0.130563 77 67 6980 snR60 5_flank no 304 30.175078 295.251221 162.7131495 2.211422651 -0.026074 77 68 12013 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6951 6973 30.172846 308.779009 169.4759275 2.229108019 -0.108634 77 69 16396 YER044C 3_exon no 188 161 176 32.185526 288.642431 160.4139785 2.20524221 0.082959 77 70 20485 YGL232W spliced yes 40 1 17 40.290209 299.028664 169.6594365 2.22957802 0.103287 77 71 21349 YPR132W spliced yes 40 13 28 38.068023 290.752521 164.410272 2.215928948 0.173112 77 72 16271 YDR447C intron no 414 101 117 48.015408 307.910569 177.9629885 2.25032969 0.048542 77 73 9023 snR17a / U3a U3a yes 690 401 416 89.955146 292.97392 191.464533 2.282088337 0.402668 77 74 1051 Gly3 GlyGCC 5_flank/tRNA no 271 34.405649 295.066449 164.736049 2.216788646 0.09483 77 75 9749 RUF4 RUF4 yes 988 521 537 35.320632 324.442482 179.881557 2.254986638 -0.136643 77 76 2515 Pro1 ProAGG tRNA/3_flank no 272 49.41037 296.996572 173.203471 2.238556591 0.150843 77 77 20388 YFL034C-B spliced yes 40 17 33 33.508692 291.127279 162.3179855 2.210366644 0.109247 77 78 20868 YLR128W spliced yes 40 1 17 35.749342 288.442359 162.0958505 2.209771897 0.166806 77 79 20683 YIL111W spliced yes 40 13 30 31.928059 306.637268 169.2826635 2.228612484 -0.036776 77 80 8738 LSR1 / U2 RNA U2 yes 1375 331 347 36.198497 270.581102 153.3897995 2.18579648 0.324626 77 81 16631 YFL039C 3_exon no 408 361 377 40.438223 291.850193 166.144208 2.220485206 0.171515 77 82 21383 Lys3_4 spliced yes 40 21 35 55.999774 303.244867 179.6223205 2.254360303 0.128923 77 83 20904 YLR316C spliced yes 40 5 22 48.741206 344.113994 196.4276 2.29320251 -0.239561 77 84 19411 YPR098C intron no 196 121 140 30.171502 294.569903 162.3707025 2.21050767 -0.021944 77 85 13609 MT_ATP8/AAP1 3_flank no 347 271 297 28.091805 309.019497 168.555651 2.226743317 -0.187119 77 86 6820 snR52 snR52 yes 292 6 23 12910.03672 7739.563918 10324.80032 4.013881661 0.338301 77 87 11305 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3411 3426 1668.95026 1162.406268 1415.678264 3.150964564 0.886464 77 88 3615 Val1 ValAAC_i tRNA/3_flank no 274 29.958678 298.046664 164.002671 2.214850921 -0.05094 77 89 18908 YOL120C intron no 547 361 377 33.835944 269.403813 151.6198785 2.180756144 0.262176 77 90 15528 YBR048W intron no 611 521 538 29.5038 283.986242 156.745021 2.195193754 0.001573 77 91 6787 snR50 3_flank no 290 35.060855 309.824096 172.4424755 2.236644249 -0.01797 77 92 3649 Val2 ValAAC_ii 5_flank/tRNA no 274 28.662818 302.197028 165.429923 2.218614068 -0.126124 77 93 8334 snoRNA cluster4 snR53 yes 638 456 472 51.325275 310.925281 181.125278 2.257979065 0.039194 77 94 12846 MT_COX1 ai1 no 13084 1891 1910 29.705568 325.581438 177.643503 2.249549329 -0.22249 77 95 15723 YBR255C intron no 194 101 118 42.566703 287.674098 165.1204005 2.217800733 0.216468 77 96 21665 copy of SH9400 no 750 31.128806 275.389004 153.258905 2.185425718 0.125813 77 97 6789 snR50 3_flank no 290 52.614352 262.245598 157.429975 2.197087426 0.498767 77 98 7755 snoRNA cluster1 snR76 yes 1574 571 583 128.398715 329.256895 228.827805 2.359508795 0.35351 77 99 6044 snR37 snR37 yes 586 136 155 29.270081 307.775408 168.5227445 2.226658523 -0.13436 77 100 9564 RUF3 RUF3 yes 631 206 225 31.129031 285.383746 158.2563885 2.199361251 0.069012 77 101 5749 snR35 5_flank no 740 42.3236 310.861583 176.5925915 2.24697248 0.001284 77 102 6500 snR46 5_flank/snR46 no 397 53.571558 327.341597 190.4565775 2.279795976 -0.082169 77 103 13001 MT_COX1 ai2 no 13084 4216 4235 30.947385 313.828139 172.387762 2.236506432 -0.11203 77 104 16964 YGR034W intron no 454 61 77 38.422341 317.254749 177.838545 2.250025896 -0.066361 78 2 4111 SRP SRP yes 875 446 460 34.01055 275.189405 154.5999775 2.189209426 0.228429 78 3 19902 snR17B spliced yes 40 13 30 32.457596 351.63908 192.048338 2.283410553 -0.369277 78 4 10002 RUF5-1 3_flank no 975 29.167199 306.913455 168.040327 2.225413518 -0.132873 78 5 14126 MT_COB exon5 yes 7308 6076 6095 27.63544 307.585584 167.610512 2.224301253 -0.206374 78 6 4375 telomerase RNA telomerase yes 1501 911 927 31.436553 303.444607 167.44058 2.22386072 -0.033705 78 7 620 Gln1 GlnCTG 3_flank no 272 51.578407 394.249343 222.913875 2.348137101 -0.568792 78 8 9448 RUF2 RUF2 yes 468 81 97 37.5348 334.710037 186.1224185 2.269798687 -0.218145 78 9 14608 MT_21S Sce1 no 4639 3331 3352 30.604517 330.880929 180.742723 2.257060821 -0.236755 78 10 14968 MT_COX 2; ORF1 COX2 no 2427 121 142 27.226938 290.672502 158.94972 2.201259767 -0.154202 78 11 10266 RUF7 5_flank no 700 40.575708 302.38365 171.479679 2.234212662 0.072758 78 12 16022 YDL189W intron no 199 101 123 27.730163 291.478691 159.604427 2.203044933 -0.129435 78 13 13251 MT_COX1 ai4 no 13084 7966 7987 30.821572 291.285849 161.0537105 2.206970735 0.020957 78 14 20880 YLR211C spliced yes 40 5 21 51.356767 360.99477 206.1757685 2.314237622 -0.347518 78 15 13116 MT_COX1 ai3 no 13084 5941 5965 28.564771 299.345118 163.9549445 2.214724519 -0.118821 78 16 10938 "rRNA(18S,5.8S,25S)" 18S yes 7956 1576 1589 47.680757 307.846167 177.763462 2.2498425 0.047377 78 17 2790 Pro6 ProTGG_v tRNA-intron no 302 i5 i21 29.364311 312.263028 170.8136695 2.232522623 -0.157656 78 18 6722 snR49 snR49 yes 365 136 155 33.841725 287.072768 160.4572465 2.205359335 0.145396 78 19 3503 Tyr1 TyrGTA_i tRNA yes 289 40 52 46.636891 296.303407 171.470149 2.234188525 0.146668 78 20 20368 YER133W spliced yes 40 13 32 35.673908 318.609707 177.1418075 2.248321072 -0.085046 78 21 7389 snR68 3_flank no 336 44.273541 364.483639 204.37859 2.310435399 -0.416644 78 22 4967 snR9 3_flank no 387 39.140322 295.448931 167.2946265 2.223481992 0.134293 78 23 5015 snR10 snR10 yes 445 106 124 37.011716 304.645678 170.828697 2.232560828 0.04354 78 24 138 Arg1 ArgACG_i tRNA/3_flank no 273 30.63463 302.343897 166.4892635 2.221386232 -0.053997 78 25 17534 YJL177W intron no 417 81 102 28.408186 328.809807 178.6089965 2.25190333 -0.287288 78 26 10065 RUF6 RUF6 yes 1251 171 188 34.407588 288.216207 161.3118975 2.2076664 0.152904 78 27 8375 snoRNA cluster 5 5_flank no 586 41 60 30.120478 333.022483 181.5714805 2.259047635 -0.2593 78 28 16402 YER056C intron no 497 101 121 36.089557 329.032671 182.561114 2.261408277 -0.17393 78 29 11213 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2951 2964 40.054567 276.604505 158.329536 2.199561939 0.317454 78 30 13706 MT_Glu (and 5_flank processing site for COB) tRNA yes 368 121 136 80.885839 354.879134 217.8824865 2.338222323 -0.104962 78 31 3679 Val2 ValAAC_ii 3_flank no 274 29.919862 298.9342 164.427031 2.215973215 -0.057768 78 32 13558 MT_COX1 exon6 yes 13084 12571 12590 27.986569 302.914812 165.4506905 2.218668584 -0.166381 78 33 1426 Leu2 LeuCAA_ii 5_flank no 314 29.126832 288.285564 158.706198 2.200593888 -0.038416 78 34 5380 snR31 5_flank no 425 32.324496 287.39311 159.858803 2.203736557 0.095445 78 35 6186 snR40 5_flank/snR40 no 297 44.817148 345.028436 194.922792 2.289862623 -0.268841 78 36 16989 YGR118W intron no 420 121 136 36.594972 264.495461 150.5452165 2.177666961 0.377884 78 37 1959 Lys2 LysCTT_ii 5_flank/tRNA no 273 36.586031 326.748631 181.667331 2.259276836 -0.153219 78 38 18936 YOL121C intron no 490 381 402 30.353368 282.286771 156.3200695 2.194014739 0.053675 78 39 11286 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3316 3333 38.537666 313.634774 176.08622 2.245725371 -0.034023 78 40 15138 MT_Thr1 5_flank no 272 1 29 32.316889 314.94687 173.6318795 2.239629466 -0.092242 78 41 19252 YPL129W intron no 205 121 138 30.250701 276.883391 153.567046 2.18629803 0.074147 78 42 12791 MT_COX1 ai1 no 13084 1066 1083 34.370345 320.797278 177.5838115 2.249403373 -0.11222 78 43 16434 YER074W intron no 566 241 257 30.283834 290.23195 160.257892 2.204819426 0.009252 78 44 19838 Negative Control no 60 NA #VALUE! 36.461956 288.152822 162.307389 2.210338291 0.17746 78 45 18906 YOL120C intron no 547 321 337 40.537662 298.746683 169.6421725 2.229533826 0.106482 78 46 493 Asp2 AspGTC_ii tRNA yes 272 26 38 56.887973 274.279047 165.58351 2.219017084 0.395514 78 47 17176 YHR021C intron no 650 101 120 29.969353 319.397875 174.683614 2.242252168 -0.177953 78 48 5511 snR32 3_flank no 388 31.740002 289.199317 160.4696595 2.205392931 0.064855 78 49 11037 "rRNA(18S,5.8S,25S)" 18S yes 7956 2071 2089 35.440459 304.874448 170.1574535 2.230850977 0.026289 78 50 18207 YML024W intron/exon no 498 441 459 39.081464 352.97159 196.026527 2.292314846 -0.358533 78 51 17596 YJL191W intron no 508 441 458 32.875284 287.744616 160.30995 2.204960479 0.110837 78 52 14075 MT_COB bi4 no 7308 5311 5330 28.817242 325.693623 177.2554325 2.248599554 -0.254827 78 53 11026 "rRNA(18S,5.8S,25S)" 18S yes 7956 2016 2033 3277.050863 4502.305821 3889.678342 3.589913689 -0.431378 78 54 16212 YDR381W intron no 866 141 155 44.663876 275.438772 160.051324 2.204259271 0.342298 78 55 13718 MT_Glu (and 5_flank processing site for COB) 3_flank no 368 301 325 30.108941 333.097999 181.60347 2.259124143 -0.260019 78 56 12643 MT_15S 15S yes 1848 1396 1424 29.389539 334.080617 181.735078 2.259438762 -0.281105 78 57 19149 YPL075W intron no 851 501 522 29.670545 299.20925 164.4398975 2.216007197 -0.068199 78 58 8499 snR19 / U1 RNA 5_flank/U1 no 868 29.917702 323.371141 176.6444215 2.247099927 -0.202517 78 59 14742 MT_ORF11; Leu; Gln 5_flank no 716 16 33 34.188773 282.562962 158.3758675 2.199689007 0.185203 78 60 6015 snR37 5_flank/snR37 no 586 40.483034 301.307476 170.895255 2.232730004 0.082511 78 61 16483 YER102W intron no 460 301 320 32.305254 304.858583 168.5819185 2.226810992 -0.013801 78 62 16616 YFL039C intron no 408 61 73 48.825421 277.774316 163.2998685 2.212985835 0.330327 78 63 19739 Negative Control no 60 NA #VALUE! 36.424315 279.329296 157.8768055 2.19831833 0.25389 78 64 4746 snR5 5_flank no 404 30.253594 242.846327 136.5499605 2.135291579 0.238765 78 65 5797 snR35 snR35 yes 740 171 195 30.261641 307.405004 168.8333225 2.227458167 -0.097354 78 66 6159 snR39B 3_flank no 296 30.268285 300.667943 165.468114 2.218714317 -0.056326 78 67 17457 YIL148W intron no 534 241 258 32.312274 316.268712 174.290493 2.241273698 -0.102651 78 68 6358 snR43 snR43 yes 409 31 43 40.493685 268.144673 154.319179 2.188419904 0.398733 78 69 16299 YDR450W intron no 535 261 277 32.153992 313.486548 172.82027 2.237594679 -0.082848 78 70 20299 YEL012W spliced yes 40 13 30 30.966084 327.869513 179.4177985 2.253865523 -0.209297 78 71 19101 YOR312C intron no 507 241 260 27.718107 310.417562 169.0678345 2.22806099 -0.213938 78 72 4985 snR10 5_flank no 445 31.50249 300.920595 166.2115425 2.22066118 -0.016139 78 73 3283 Thr2 ThrCGT tRNA yes 272 16 30 49.26124 296.780112 173.020676 2.238098004 0.152025 78 74 13685 MT_ORF 5 ORF5 yes 331 121 147 29.108684 320.001016 174.55485 2.24193192 -0.211854 78 75 12457 5S rRNA NTS2/5S no 1420 1241 1255 68.87151 336.431527 202.6515185 2.306749862 -0.057928 78 76 68 Ala2 AlaTGC 5_flank no 273 29.125877 308.459511 168.792694 2.227353645 -0.143605 78 77 15072 MT_COX 2; ORF1 ORF1exon1 yes 2427 1681 1703 29.313541 321.916664 175.6151025 2.244561862 -0.21552 78 78 10954 "rRNA(18S,5.8S,25S)" 18S yes 7956 1656 1673 32246.36559 19574.35 25910.35779 4.41347341 -0.085674 78 79 16100 YDR059C intron no 190 101 120 29.856297 312.141944 170.9991205 2.232993877 -0.139591 78 80 14248 MT_Ser 3_flank no 290 196 222 28.060426 320.728707 174.3945665 2.24153295 -0.254335 78 81 14089 MT_COB bi4 no 7308 5521 5543 30.279038 313.368547 171.8237925 2.235083301 -0.13213 78 82 9150 snR7 U5 RNA U5 yes 415 21 33 8446.05216 5965.965447 7206.008804 3.857694788 0.254916 78 83 18507 YMR194W intron/exon no 563 501 520 30.413397 289.58941 160.0014035 2.204123792 0.017791 78 84 1306 Ile3 IleTAT_ii 5_flank no 333 29.374308 297.414678 163.394493 2.213237415 -0.067601 78 85 20452 YGL137W spliced yes 40 9 30 28.314025 332.344803 180.329414 2.256066571 -0.310444 78 86 18338 YML124C intron no 398 81 95 36.517066 280.820466 158.668766 2.200491444 0.241785 78 87 11291 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3341 3359 28.191306 288.258084 158.224695 2.199274267 -0.089013 78 88 12742 MT_COX1 ai1 no 13084 331 351 30.101834 323.440179 176.7710065 2.247411035 -0.196503 78 89 11571 "rRNA(18S,5.8S,25S)" 25S yes 7956 4741 4756 2232.79963 9262.966007 5747.882819 3.759507906 -2.099883 78 90 13166 MT_COX1 intronic no 13084 6691 6705 31.507295 291.384776 161.4460355 2.208027385 0.04331 78 91 11822 "rRNA(18S,5.8S,25S)" 25S yes 7956 5996 6011 96.141474 374.868158 235.504816 2.371999793 -0.127846 78 92 17765 YKL157W 3_exon no 483 441 458 30.422049 309.746789 170.084419 2.230664531 -0.105807 78 93 11174 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2756 2773 168.439447 433.495785 300.967616 2.478519768 -0.009365 78 94 2107 Met1 MetCAT_i 5_flank no 273 31.249553 278.058835 154.654194 2.189361702 0.118981 78 95 13641 MT_ATP6 ATP6 yes 980 421 442 29.058443 298.437979 163.748211 2.214176564 -0.088156 78 96 2453 Phe5 PheGAA_v tRNA/intron no 291 36 i16 34.433043 314.817707 174.625375 2.242107352 -0.064965 78 97 16099 YDR059C intron no 190 81 100 36.260269 304.052353 170.156311 2.230848061 0.042431 78 98 1377 Leu1 LeuCAA_i 5_flank no 315 27.109401 284.772589 155.940995 2.192960301 -0.133618 78 99 21061 YMR194W spliced yes 40 21 40 29.021433 292.104979 160.563206 2.205646031 -0.061575 78 100 4830 snR8 5_flank no 390 30.912404 309.700701 170.3065525 2.231231358 -0.088836 78 101 19629 RNA14 2.2 RNA14 2.2 yes 401 81 97 55.19216 377.347451 216.2698055 2.33499589 -0.433799 78 102 6549 snR46 3_flank no 397 29.016155 302.861809 165.938982 2.219948421 -0.113827 78 103 10644 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 106 128 28.036763 307.147184 167.5919735 2.224253215 -0.182074 78 104 2288 Phe2 PheGAA_ii tRNA/intron no 292 36 i16 34.528918 335.880749 185.2048335 2.267652317 -0.235522 79 2 17756 YKL157W intron no 483 261 281 27.089572 283.840348 155.46496 2.191632519 -0.130751 79 3 9326 RUF1 RUF1 yes 750 206 223 47.464931 427.112345 237.288638 2.375276944 -0.800894 79 4 15395 YBL050W 5_exon no 216 1 20 26.558368 294.62427 160.591319 2.205722065 -0.210814 79 5 9025 snR17a / U3a U3a yes 690 411 427 54.22863 297.461582 175.845106 2.245130286 0.169566 79 6 9631 RUF4 5_flank no 988 45.695595 295.048424 170.3720095 2.231398246 0.155407 79 7 13853 MT_COB bi2 no 7308 1981 2005 28.155907 299.694071 163.924989 2.214645163 -0.142774 79 8 14304 MT_VAR1 VAR1 yes 1467 766 788 32.097629 331.808203 181.952916 2.25995902 -0.223948 79 9 6135 snR39B snR39B yes 296 16 28 37.997716 285.640633 161.8191745 2.209029981 0.216183 79 10 10967 "rRNA(18S,5.8S,25S)" 18S yes 7956 1721 1739 73.156763 302.22063 187.6886965 2.273438118 0.231842 79 11 3827 RNaseP RNaseP yes 569 101 113 50.236222 283.224377 166.7302995 2.22201453 0.281087 79 12 16416 YER056C intron no 497 381 400 26.040088 288.810033 157.4250605 2.197073869 -0.220042 79 13 9538 RUF3 RUF3 yes 631 76 92 30.131579 266.05631 148.0939445 2.170537301 0.121133 79 14 8076 snoRNA cluster 2 snR61 yes 739 616 633 36.254513 315.215671 175.735092 2.244858493 -0.053648 79 15 17561 YJL189W intron no 486 221 238 32.733212 280.308436 156.520824 2.194572126 0.154521 79 16 13305 MT_COX1 ai5a no 13084 8776 8795 31.149045 291.040862 161.0949535 2.207081936 0.033543 79 17 20439 YGL087C spliced yes 40 5 23 39.596639 305.208265 172.402452 2.236543438 0.044549 79 18 14629 MT_21S Sce1 no 4639 3646 3668 27.900864 294.773691 161.3372775 2.207734724 -0.134868 79 19 19948 YBL050W spliced yes 40 1 19 37.481883 313.358297 175.42009 2.244079329 -0.034095 79 20 11715 "rRNA(18S,5.8S,25S)" 25S yes 7956 5461 5476 392.110189 700.758384 546.4342865 2.737537942 -0.053584 79 21 6226 snR42 5_flank no 551 39.093789 301.612952 170.3533705 2.231350731 0.076491 79 22 6898 snR56 3_flank no 288 37.082809 301.572094 169.3274515 2.228727372 0.071961 79 23 5789 snR35 snR35 yes 740 131 147 37.034926 297.411786 167.223356 2.223296935 0.105756 79 24 8525 snR19 / U1 RNA U1 yes 868 121 137 158.660783 428.795704 293.7282435 2.467945708 -0.038655 79 25 3429 Trp1 TrpCCA 5_flank no 306 30.435891 283.189382 156.8126365 2.195381057 0.053643 79 26 6427 snR45 5_flank no 372 28.162236 281.16014 154.661188 2.189381342 -0.057417 79 27 6353 snR43 snR43 yes 409 6 21 46.329503 290.417098 168.3733005 2.226273225 0.200767 79 28 5632 snR34 snR34 yes 750 81 100 29.815756 291.335996 160.575876 2.2056803 -0.016109 79 29 20736 YJL191W spliced yes 40 1 19 34.753907 305.108317 169.931112 2.230272899 0.016294 79 30 21512 copy of SH2857 no 303 56.016787 305.257376 180.6370815 2.256806908 0.11189 79 31 15186 MT_COX3 cox3 no 1010 211 228 33.803564 289.08229 161.442927 2.208019023 0.131374 79 32 4063 SRP SRP yes 875 206 225 33.96199 320.909105 177.4355475 2.249040631 -0.11803 79 33 2323 Phe3 PheGAA_iii 5_flank no 291 30.079949 286.305736 158.1928425 2.19918683 0.020791 79 34 11277 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3271 3288 34.358437 292.983318 163.6708775 2.213971411 0.111771 79 35 16637 YFR024C intron no 218 81 98 35.544874 276.728567 156.1367205 2.193505053 0.264237 79 36 1323 Ile3 IleTAT_ii 5_flank/tRNA no 333 34.601004 267.03381 150.817407 2.17845147 0.301793 79 37 5949 snR36 snR36 yes 555 201 223 32.551594 339.022712 185.787153 2.26901568 -0.271291 79 38 2765 Pro6 ProTGG_v 5_flank no 302 40.808065 340.188237 190.498151 2.279890765 -0.251192 79 39 4064 SRP SRP yes 875 211 229 38.675399 355.70739 197.1913945 2.294887958 -0.381199 79 40 7886 snoRNA cluster1 snR73/intergenic no 1574 1226 1246 32.429811 293.814104 163.1219575 2.212512424 0.058158 79 41 21895 copy of SH19000 no 309 30.34955 296.933786 163.641668 2.213893898 -0.030516 79 42 17108 YHR001W exon/intron no 163 41 55 40.667058 297.489606 169.078332 2.228087955 0.118555 79 43 13056 MT_COX1 ai2 no 13084 5041 5062 30.358723 327.724265 179.041494 2.252953693 -0.216404 79 44 20930 YLR388W spliced yes 40 9 28 31.376049 324.342503 177.859276 2.25007652 -0.177122 79 45 17889 YLR048W intron no 459 301 318 32.341608 315.673945 174.0077765 2.240568658 -0.097624 79 46 2089 Lys4 LysTTT_ii 3_flank no 296 32.201765 286.87709 159.5394275 2.202868029 0.094781 79 47 12082 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7296 7315 31.977844 314.672509 173.3251765 2.238861651 -0.094455 79 48 20335 YER074W-A spliced yes 40 5 23 31.683687 299.575559 165.629623 2.219138013 -0.001902 79 49 3793 RNaseP 5_flank no 569 37.344263 242.9859 140.1650815 2.146639834 0.555218 79 50 17894 YLR048W intron/exon no 459 401 418 34.995377 304.861331 169.928354 2.230265851 0.021163 79 51 9768 RUF4 RUF4 yes 988 616 632 36.687962 289.770547 163.2292545 2.212797997 0.166183 79 52 19746 Negative Control no 60 NA #VALUE! 36.538856 289.395395 162.9671255 2.212100005 0.167699 79 53 20168 YDL136W spliced yes 40 17 29 34.597631 287.51435 161.0559905 2.206976883 0.161211 79 54 12936 MT_COX1 ai2 no 13084 3241 3262 31.818444 325.428264 178.623354 2.25193824 -0.179584 79 55 7876 snoRNA cluster1 snR73 yes 1574 1176 1196 31.090461 296.898418 163.9944395 2.214829123 -0.005111 79 56 17071 YGR225W 5_exon no 193 1 18 29.406045 304.40214 166.9040925 2.222466986 -0.10923 79 57 12896 MT_COX1 intronic no 13084 2641 2658 31.716372 277.881561 154.7989665 2.189768057 0.137579 79 58 8694 LSR1 / U2 RNA U2 yes 1375 111 128 31.984383 317.826426 174.9054045 2.242803229 -0.119016 79 59 5291 snR30 snR30 yes 801 306 323 30.129429 297.96278 164.0461045 2.214965922 -0.044487 79 60 17911 YLR061W intron no 489 281 302 36.395647 287.490155 161.942901 2.209361915 0.182397 79 61 9027 snR17a / U3a U3a yes 690 421 437 44.70674 286.102274 165.404507 2.218547339 0.236748 79 62 6531 snR46 snR46 yes 397 146 163 30.283172 326.618643 178.4509075 2.251518761 -0.209084 79 63 13225 MT_COX1 ai4 no 13084 7576 7597 28.233352 304.31006 166.271706 2.220818353 -0.158859 79 64 16201 YDR381C intron no 294 201 217 100.267601 352.272649 226.270125 2.354627217 0.038553 79 65 9710 RUF4 RUF4 yes 988 326 341 39.600441 266.817649 153.209045 2.185284405 0.401758 79 66 16175 YDR305C intron no 189 61 80 30.319864 294.599199 162.4595315 2.210745196 -0.017005 79 67 8133 snoRNA cluster 3; snR41 yes 743 176 193 32.346321 296.37165 164.3589855 2.215793452 0.039509 79 68 20917 YLR344W spliced yes 40 9 27 30.20016 299.146264 164.673212 2.216622957 -0.049337 79 69 16275 YDR447C intron no 414 181 198 36.174823 285.499297 160.83706 2.206386126 0.19705 79 70 2022 Lys3 LysTTT_i intron/tRNA no 296 i19 49 129.609979 350.478561 240.04427 2.380291344 0.224571 79 71 6033 snR37 snR37 yes 586 81 98 33.553356 281.885241 157.7192985 2.197884837 0.170034 79 72 3156 Ser5 SerTGA 5_flank no 282 31.228655 309.581318 170.4049865 2.231482299 -0.077497 79 73 4341 telomerase RNA telomerase yes 1501 741 758 28.981391 293.340106 161.1607485 2.207259276 -0.069339 79 74 7880 snoRNA cluster1 snR73 yes 1574 1196 1212 36.655826 297.556371 167.1060985 2.2229923 0.100295 79 75 8650 snR19 / U1 RNA 3_flank no 868 30.723263 286.58759 158.6554265 2.200454931 0.04756 79 76 21395 Pro2_7 spliced yes 40 13 25 50.553417 288.595129 169.574273 2.229359964 0.23221 79 77 9154 snR7 U5 RNA U5 yes 415 41 55 35.045639 278.452725 156.749182 2.195205283 0.238031 79 78 18493 YMR194W intron no 563 221 241 29.432216 328.644903 179.0385595 2.252946575 -0.249386 79 79 17731 YKL156W intron no 450 201 217 33.833156 304.53285 169.183003 2.228356729 0.009842 79 80 10391 RUF7 3_flank no 700 39.329503 272.966417 156.14796 2.193536315 0.34261 79 81 13923 MT_COB bi3 no 7308 3031 3053 30.364531 327.057692 178.7111115 2.252151556 -0.211293 79 82 2784 Pro6 ProTGG_v tRNA yes 302 11 29 36.760596 296.45143 166.606013 2.221690672 0.110671 79 83 2844 Pro7 ProTGG_vi tRNA/intron no 303 27 i2 33.738172 288.62328 161.180726 2.207313108 0.132278 79 84 11446 "rRNA(18S,5.8S,25S)" 25S yes 7956 4116 4131 92.164671 337.212737 214.688704 2.331809194 0.086881 79 85 2495 Pro1 ProAGG 5_flank no 272 34.783731 266.732981 150.758356 2.178281393 0.309368 79 86 13587 MT_COX1 3_flank no 13084 13006 13030 28.484298 310.213109 169.3487035 2.228781876 -0.177302 79 87 20042 YBR189W spliced yes 40 9 24 120.098012 338.646491 229.3722515 2.360540878 0.245608 79 88 621 Gln1 GlnCTG 3_flank no 272 51.956893 369.973603 210.965248 2.32421092 -0.405492 79 89 6201 snR40 snR40 yes 297 66 84 35.041714 300.300586 167.67115 2.224458343 0.058961 79 90 4101 SRP SRP yes 875 396 412 27.50169 298.721715 163.1117025 2.212485121 -0.174975 79 91 3420 Trp1 TrpCCA 5_flank no 306 38.791002 315.221155 177.0060785 2.247988181 -0.047522 79 92 13279 MT_COX1 exon5a yes 13084 8386 8403 30.2304 288.41546 159.32293 2.202278285 0.018767 79 93 1233 Ile1 IleAAT 3_flank no 274 29.579081 298.533528 164.0563045 2.214992924 -0.06726 79 94 11836 "rRNA(18S,5.8S,25S)" 25S yes 7956 6066 6084 55.075683 330.544819 192.810251 2.28513012 -0.09916 79 95 6442 snR45 snR45 yes 372 56 72 52.554677 299.204774 175.8797255 2.245215779 0.14644 79 96 4502 U3b (snR17b) U3b yes 662 66 83 41.279437 308.088629 174.684033 2.24225321 0.022304 79 97 5835 snR35 snR35 yes 740 361 378 38.547097 292.150487 165.348792 2.218401026 0.164268 79 98 1623 Leu5 LeuCAA_v 5_flank/tRNA no 315 26.811501 274.069118 150.4403095 2.177364218 -0.109931 79 99 7222 snR64 3_flank no 301 30.582312 283.291448 156.93688 2.195725014 0.06062 79 100 7706 snoRNA cluster1 intergenic/snR77 no 1574 326 347 34.3579 336.999364 185.678632 2.268761928 -0.245265 79 101 16648 YFR031C intron no 247 81 97 38.107769 305.974891 172.04133 2.235632791 0.03404 79 102 21640 copy of SH8350 no 638 32.560701 349.712041 191.136371 2.281343336 -0.353633 79 103 20426 YGL033W spliced yes 40 1 15 56.846256 305.254492 181.050374 2.257799426 0.116276 79 104 15922 YDL083C 3_exon no 532 521 532 34.387553 281.002649 157.695101 2.197818202 0.201452 80 2 4546 U3b (snR17b) U3b yes 662 286 298 39.61628 276.724574 158.170427 2.199125287 0.311826 80 3 12623 MT_15S 15S yes 1848 1096 1111 55.723775 386.513406 221.1185905 2.344625257 -0.488969 80 4 10029 RUF6 5_flank/RUF6 no 1251 41.671425 280.661344 161.1663845 2.207274463 0.283483 80 5 16998 YGR118W intron no 420 301 315 70.525039 367.536367 219.030703 2.340504997 -0.259641 80 6 506 Asp2 AspGTC_ii 3_flank no 272 29.718274 283.919184 156.818729 2.19539793 0.013142 80 7 18703 YNL130C intron no 541 141 158 33.599274 263.144449 148.3718615 2.171351545 0.298129 80 8 6115 snR39B 5_flank no 296 32.165476 327.605592 179.885534 2.25499624 -0.191572 80 9 9726 RUF4 RUF4 yes 988 406 421 47.352086 314.579774 180.96593 2.257596819 -0.011441 80 10 9622 RUF3 3_flank no 631 33.022576 278.065561 155.5440685 2.191853454 0.178503 80 11 9867 RUF5-1 RUF5-1 yes 975 141 160 29.685451 329.905416 179.7954335 2.254778657 -0.247488 80 12 6351 snR43 5_flank/snR43 no 409 37.707099 258.650277 148.178688 2.170785745 0.45029 80 13 18043 YLR333C intron no 523 141 162 26.530352 302.704852 164.617602 2.216476271 -0.248484 80 14 5614 snR34 5_flank/snR34 no 750 36.572528 276.244194 156.408361 2.194259965 0.283018 80 15 17718 YKL081W intron/exon no 426 361 379 34.97523 314.896765 174.9359975 2.242879186 -0.059117 80 16 15371 YBL027W intron no 484 181 196 39.352975 277.273527 158.313251 2.199517267 0.304167 80 17 13744 MT_COB exon1 yes 7308 346 362 31.711419 293.028623 162.370021 2.210505847 0.039695 80 18 11269 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3231 3248 32.059994 285.337429 158.6987115 2.200573401 0.100082 80 19 8865 LSR1 / U2 RNA U2 yes 1375 966 982 34.435695 292.382523 163.409109 2.213276262 0.117774 80 20 2574 Pro2 ProTGG_i 3_flank no 303 40.941747 323.444162 182.1929545 2.260531579 -0.112281 80 21 14760 MT_ORF11; Leu; Gln ORF11 yes 716 286 314 28.612689 314.240232 171.4264605 2.234077858 -0.196353 80 22 12364 5S rRNA NTS2 no 1420 776 793 30.73471 293.784752 162.259731 2.210210752 0.002283 80 23 10605 RUF8 RUF8/3_flank no 1151 30.66953 298.136457 164.4029935 2.215909721 -0.027007 80 24 4821 snR5 3_flank no 404 30.51124 304.544281 167.5277605 2.224086783 -0.071563 80 25 289 Arg4 ArgCCT tRNA yes 272 41 53 83.00841 356.75956 219.883985 2.342193599 -0.103361 80 26 13055 MT_COX1 ai2 no 13084 5026 5047 32.073585 325.950551 179.012068 2.25288231 -0.18024 80 27 1841 Leu9 LeuTAG_ii 5_flank no 301 33.844954 292.031813 162.9383835 2.212023403 0.113575 80 28 9442 RUF2 RUF2 yes 468 51 66 47.772101 338.939025 193.355563 2.286356672 -0.206154 80 29 12194 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7856 7874 29.522213 281.411533 155.466873 2.191637863 0.014671 80 30 4310 telomerase RNA telomerase yes 1501 586 603 71.924253 361.578209 216.751231 2.335961573 -0.210876 80 31 10352 RUF7 RUF7 yes 700 371 387 41.719121 289.579685 165.649403 2.219189875 0.196184 80 32 8986 snR17a / U3a U3a yes 690 216 230 70.545194 311.150319 190.8477565 2.280687059 0.144791 80 33 14039 MT_COB bi4 no 7308 4771 4795 27.989969 314.601942 171.2959555 2.233747109 -0.221448 80 34 1361 Ile3 IleTAT_ii 3_flank no 333 30.231624 319.297736 174.76468 2.242453666 -0.168278 80 35 8914 LSR1 / U2 RNA 3_flank no 1375 30.395881 283.499183 156.947532 2.195754491 0.050143 80 36 15242 MT_fMet 5_flank no 274 61 85 27.396338 288.9841 158.190219 2.199179627 -0.136808 80 37 4261 telomerase RNA telomerase yes 1501 341 360 34.666606 341.539755 188.1031805 2.274396139 -0.281842 80 38 10725 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 511 528 127.399482 424.895677 276.1475795 2.441141241 -0.198849 80 39 12900 MT_COX1 intronic/exon2 no 13084 2701 2723 32.515536 284.529395 158.5224655 2.200090818 0.120036 80 40 6578 snR47 5_flank/snR47 no 299 36.595332 275.94636 156.270846 2.193877963 0.285942 80 41 17737 YKL156W intron no 450 321 338 42.766156 292.942887 167.8545215 2.224933044 0.166184 80 42 5575 snR33 snR33 yes 383 161 177 59.368471 356.233109 207.80079 2.317647194 -0.261215 80 43 14902 MT_Ile 3_flank no 276 181 207 28.301225 310.971029 169.636127 2.229518348 -0.188527 80 44 3940 RNase MRP RNaseMRP yes 540 116 140 30.334089 312.478125 171.406107 2.234026291 -0.124994 80 45 2768 Pro6 ProTGG_v 5_flank no 302 30.258376 298.768295 164.5133355 2.216201108 -0.044998 80 46 4381 telomerase RNA telomerase yes 1501 941 957 30.108306 290.344945 160.2266255 2.204734686 0.002465 80 47 4120 SRP SRP yes 875 491 503 35.963107 288.727368 162.3452375 2.210439553 0.166834 80 48 14069 MT_COB bi4 no 7308 5221 5240 31.583402 318.298211 174.9408065 2.242891124 -0.127906 80 49 20582 YHR016C spliced yes 40 17 29 39.186161 264.782943 151.984552 2.181799448 0.416322 80 50 13189 MT_COX1 exon4 yes 13084 7036 7057 28.935651 315.111131 172.023391 2.235587504 -0.189728 80 51 16060 YDL219W intron no 171 81 100 31.619986 311.372722 171.496354 2.234254891 -0.075116 80 52 19701 Negative Control no 60 NA #VALUE! 34.400336 287.568991 160.9846635 2.206784504 0.158373 80 53 16635 YFR024C exon/intron no 218 41 58 30.533854 326.329533 178.4316935 2.251471997 -0.203483 80 54 6798 snR50 3_flank no 290 30.690816 333.388769 182.0397925 2.260166332 -0.25425 80 55 16896 YGL226C intron no 249 81 102 32.926249 303.010443 167.968346 2.225227446 0.010977 80 56 20786 YKL081W spliced yes 40 5 23 33.273774 309.238924 171.256349 2.233646681 -0.034959 80 57 20098 YDL029W spliced yes 40 17 33 35.639221 278.873707 157.256464 2.196608506 0.248902 80 58 18586 YNL050C intron no 191 61 79 33.927344 309.677385 171.8023645 2.235029137 -0.030407 80 59 11966 "rRNA(18S,5.8S,25S)" 25S yes 7956 6716 6732 2081.185192 6243.891461 4162.538327 3.619358245 -1.530861 80 60 1537 Leu3 LeuCAA_iii 3_flank no 314 38.383892 308.422676 173.403284 2.239057318 0.012435 80 61 8159 snoRNA cluster 3; snR70 yes 743 306 322 34.33475 270.855787 152.5952685 2.183541068 0.267561 80 62 21624 copy of SH7729 no 1574 32.301858 301.399056 166.850457 2.222327401 0.007103 80 63 20993 YML073C spliced yes 40 13 29 59.213053 336.889216 198.0511345 2.296777335 -0.121973 80 64 8182 snoRNA cluster 3; snR70 yes 743 421 438 36.461894 290.747089 163.6044915 2.213795222 0.15531 80 65 2871 Pro7 ProTGG_vi 3_flank no 303 32.364315 309.783176 171.0737455 2.233183364 -0.05078 80 66 18470 YMR143W intron no 644 401 413 73.953932 314.372439 194.1631855 2.288166889 0.139167 80 67 4351 telomerase RNA telomerase yes 1501 791 813 32.315865 343.374583 187.845224 2.273800158 -0.305822 80 68 10515 RUF8 RUF8 yes 1151 501 523 30.140549 311.175513 170.658031 2.232126731 -0.123987 80 69 16453 YER074W intron no 202 61 73 1556.606374 1610.074571 1583.340473 3.199574313 0.280842 80 70 4048 SRP SRP yes 875 131 148 33.69115 279.996002 156.843576 2.195466736 0.186695 80 71 20492 YGL251C spliced yes 40 5 21 59.439457 344.50047 201.9699635 2.305286787 -0.1771 80 72 907 Glu3 GluTTC_ii tRNA yes 272 46 59 50.784172 264.876339 157.8302555 2.19819026 0.466346 80 73 11614 "rRNA(18S,5.8S,25S)" 25S yes 7956 4956 4971 1023.115071 1733.143389 1378.12923 3.139289944 -0.38321 80 74 776 Gln4 GlnTTG_iii 3_flank no 272 28.531007 299.47302 164.0020135 2.21484918 -0.121228 80 75 18667 YNL112W intron no 1102 521 537 40.149326 318.417039 179.2831825 2.253539553 -0.072098 80 76 2597 Pro3 ProTGG_ii 5_flank no 303 63.894226 323.204784 193.549505 2.286792065 0.010034 80 77 10702 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 396 414 34.791694 301.826474 168.309084 2.226107556 0.043471 80 78 5160 snR13 5_flank no 324 29.268828 306.628251 167.9485395 2.225176232 -0.127529 80 79 559 Cys1 CysGCA 3_flank no 272 31.697436 296.637441 164.1674385 2.215287022 0.016698 80 80 4815 snR5 3_flank no 404 28.034947 301.462958 164.7489525 2.216822662 -0.1573 80 81 5337 snR30 snR30 yes 801 536 555 30.400237 297.294356 163.8472965 2.21443928 -0.031008 80 82 19927 YBL018C spliced yes 40 9 28 30.632297 307.644131 169.138214 2.22824174 -0.086074 80 83 8621 snR19 / U1 RNA U1 yes 868 601 618 28.682288 321.748282 175.215285 2.243571989 -0.237289 80 84 11200 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2886 2904 37.124782 306.22508 171.674931 2.234706882 0.02937 80 85 5457 snR32 5_flank no 388 30.829422 288.341025 159.5852235 2.202992676 0.039932 80 86 18484 YMR194W exon/intron no 563 41 57 43.357653 317.285926 180.3217895 2.256048209 -0.051388 80 87 2236 Phe1 PheGAA_i intron/tRNA no 292 i19 51 187.433517 394.330256 290.8818865 2.463716678 0.274557 80 88 20010 YBR082C spliced yes 40 21 37 51.187282 299.368985 175.2781335 2.24372774 0.138517 80 89 5275 snR30 snR30 yes 801 226 240 36.186121 276.213894 156.2000075 2.19368105 0.278891 80 90 9979 RUF5-1 RUF5-1 yes 975 701 718 31.541213 298.119222 164.8302175 2.217036832 0.002365 80 91 12266 5S rRNA NTS2 no 1420 286 305 30.848554 308.187252 169.517903 2.229215571 -0.081975 80 92 15128 MT_Phe tRNA yes 265 106 123 37.762111 324.286542 181.0243265 2.25773694 -0.129197 80 93 16348 YDR500C intron no 439 241 258 44.361195 328.180264 186.2707295 2.270144615 -0.139195 80 94 1463 Leu2 LeuCAA_ii tRNA yes 314 e22 61 47.148266 304.102412 175.625339 2.244587176 0.076958 80 95 19430 YPR132W intron no 465 321 338 31.983446 286.724505 159.3539755 2.202362903 0.088657 80 96 5576 snR33 snR33 yes 383 166 182 157.452182 395.819946 276.636064 2.441908797 0.118521 80 97 1996 Lys3 LysTTT_i 5_flank no 296 48.943531 275.09697 162.0202505 2.209569299 0.357238 80 98 13035 MT_COX1 ai2 no 13084 4726 4748 26.521977 321.732721 174.127349 2.240866988 -0.330154 80 99 10454 RUF8 RUF8 yes 1151 196 215 30.289931 295.490834 162.8903825 2.211895443 -0.0236 80 100 4266 telomerase RNA telomerase yes 1501 366 383 30.423192 336.70405 183.563621 2.263786616 -0.28233 80 101 18148 YLR406C intron no 449 341 360 28.669506 278.690388 153.679947 2.186617202 -0.01793 80 102 7431 snR69 snR69 yes 301 56 73 39.732074 322.148485 180.9402795 2.257535257 -0.105543 80 103 9699 RUF4 RUF4 yes 988 271 290 30.516442 327.347258 178.93185 2.252687652 -0.211414 80 104 13123 MT_COX1 ai3 no 13084 6046 6070 28.64756 345.936171 187.2918655 2.272518915 -0.37408 81 2 19770 Negative Control no 60 NA #VALUE! 45.412049 310.258243 177.835146 2.250017596 0.016644 81 3 12832 MT_COX1 ai1 no 13084 1681 1698 32.95639 361.746538 197.351464 2.295240352 -0.447064 81 4 6070 snR37 snR37 yes 586 266 285 27.740867 285.045631 156.393249 2.194218002 -0.099117 81 5 13210 MT_COX1 ai4 no 13084 7351 7373 27.877067 336.140069 182.008568 2.260091833 -0.347591 81 6 7901 snoRNA cluster1 intergenic no 1574 1301 1322 28.062406 284.156701 156.1095535 2.193429482 -0.077051 81 7 3261 Thr2 ThrCGT 5_flank no 272 31.913931 293.544539 162.729235 2.211465583 0.043104 81 8 5680 snR34 snR34 yes 750 321 336 61.612676 366.218071 213.9153735 2.330241997 -0.313834 81 9 9373 RUF1 RUF1 yes 750 441 457 60.553429 332.066229 196.309829 2.292942045 -0.077524 81 10 13565 MT_COX1 exon6 yes 13084 12676 12693 29.421975 305.321337 167.371656 2.223681913 -0.114215 81 11 20680 YIL111W spliced yes 40 1 19 33.643476 299.023283 166.3333795 2.220979411 0.052635 81 12 15629 YBR181C intron no 452 361 377 36.021706 290.631267 163.3264865 2.21305662 0.151265 81 13 15144 MT_Thr1 5_flank/tRNA no 272 91 115 28.660157 300.189681 164.424919 2.215967637 -0.117393 81 14 18994 YOR122C intron no 309 61 80 30.924516 338.890095 184.9073055 2.26695407 -0.291556 81 15 20907 YLR316C spliced yes 40 17 34 35.197809 321.468586 178.3331975 2.251232197 -0.111232 81 16 21679 copy of SH10029 no 1251 55.697063 412.96269 234.3298765 2.369827664 -0.652407 81 17 17210 YHR039C intron no 262 141 155 43.992179 371.144741 207.56846 2.317161363 -0.465732 81 18 13266 MT_COX1 ai4 no 13084 8191 8215 32.105047 329.691975 180.898511 2.257434992 -0.20804 81 19 14022 MT_COB exon4 yes 7308 4516 4535 28.247335 281.459566 154.8534505 2.189920887 -0.054146 81 20 9569 RUF3 RUF3 yes 631 231 250 40.848907 351.777708 196.3133075 2.29294974 -0.342751 81 21 5483 snR32 snR32 yes 388 76 92 32.652047 288.897423 160.774735 2.206217802 0.09636 81 22 20279 YDR450W spliced yes 40 9 27 30.574699 284.358365 157.466532 2.197188263 0.055227 81 23 6514 snR46 snR46 yes 397 61 77 34.615796 309.574035 172.0949155 2.235768039 -0.021264 81 24 17135 YHR010W intron no 661 421 437 36.467754 291.798736 164.133245 2.215196556 0.146453 81 25 21367 Leu1_5 spliced yes 40 5 17 30.053489 271.598395 150.825942 2.178476046 0.089647 81 26 8207 snoRNA cluster 3; snR51 yes 743 546 567 33.851106 312.861542 173.356324 2.238939689 -0.056619 81 27 20942 YLR426W spliced yes 40 9 25 37.627282 293.500207 165.5637445 2.21896524 0.145045 81 28 20515 YGR029W spliced yes 40 21 37 32.430892 302.303619 167.3672555 2.223670495 0.005748 81 29 17941 YLR093C 3_exon no 241 221 240 27.388207 298.915505 163.151856 2.212592019 -0.182263 81 30 15972 YDL136W 5_exon no 505 21 39 43.43876 326.718373 185.0785665 2.267356127 -0.131477 81 31 16684 YGL030W intron no 330 141 157 34.583982 290.556305 162.5701435 2.211040789 0.135037 81 32 18559 YMR292W intron no 182 61 80 29.773571 312.195253 170.984412 2.232956519 -0.142803 81 33 4627 snR3 snR3 yes 395 51 70 30.007629 281.572235 155.789932 2.192539388 0.03925 81 34 195 Arg2 ArgACG_ii 3_flank no 273 32.276909 300.420351 166.34863 2.221019228 0.012284 81 35 13038 MT_COX1 ai2 no 13084 4771 4788 30.397439 274.224415 152.310927 2.182731061 0.094515 81 36 248 Arg3 ArgCCG 3_flank no 272 30.497537 300.308918 165.4032275 2.21854398 -0.046247 81 37 8227 snoRNA cluster 3; snR51/3_flank no 743 646 664 36.743587 353.709714 195.2266505 2.290539103 -0.373048 81 38 21439 TH297 - control oligo; WTP_221 no 47.104431 313.163181 180.133806 2.255595225 -0.000814 81 39 10215 RUF6 RUF6 yes 1251 921 938 38.712957 327.801307 183.257132 2.263060886 -0.156958 81 40 10796 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 866 886 34.503974 293.691954 164.097964 2.215103193 0.107551 81 41 20884 YLR211C spliced yes 40 21 40 36.519428 301.75303 169.136229 2.228236643 0.06414 81 42 6509 snR46 snR46 yes 397 36 51 46.829421 313.191026 180.0102235 2.255297171 -0.002487 81 43 19672 SIR1 2.4 SIR1 2.4 yes 401 161 178 30.299566 297.337999 163.8187825 2.214363694 -0.034742 81 44 11297 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3371 3389 30.262908 280.443371 155.3531395 2.191320034 0.057762 81 45 8475 snoRNA cluster 5 3_flank no 586 541 560 32.221889 304.663885 168.442887 2.226452676 -0.015323 81 46 18827 YNL302C intron no 651 361 378 36.125797 286.052841 161.089319 2.207066746 0.191702 81 47 9513 RUF3 5_flank no 631 31.784765 285.102191 158.443478 2.199874367 0.092597 81 48 21537 copy of SH3943 no 540 29.451131 287.282668 158.3668995 2.199664414 -0.016571 81 49 6967 snR60 5_flank no 304 38.996556 288.629341 163.8129485 2.214348227 0.199207 81 50 297 Arg4 ArgCCT 3_flank no 272 32.686509 297.219098 164.9528035 2.217359701 0.045177 81 51 8032 snoRNA cluster 2 snR55 yes 739 396 412 46.014107 301.009889 173.511998 2.239329511 0.101527 81 52 11592 "rRNA(18S,5.8S,25S)" 25S yes 7956 4846 4859 72.11274 319.839865 195.9763025 2.29220356 0.086076 81 53 12653 MT_15S 15S yes 1848 1546 1562 34.19752 296.589509 165.3935145 2.218518476 0.079595 81 54 16349 YDR500C intron no 439 261 278 40.204624 334.665388 187.435006 2.272850704 -0.208417 81 55 6853 snR52 3_flank no 292 30.756193 296.109753 163.432973 2.213339681 -0.011501 81 56 2265 Phe2 PheGAA_ii 5_flank no 292 35.046611 302.502336 168.7744735 2.227306762 0.040966 81 57 11606 "rRNA(18S,5.8S,25S)" 25S yes 7956 4916 4931 37336.66838 18864.93538 28100.80188 4.448718713 0.155193 81 58 5537 snR33 5_flank no 383 31.735655 295.781329 163.758492 2.21420383 0.023278 81 59 16331 YDR471W intron no 484 381 402 33.99856 328.983566 181.491063 2.258855244 -0.178996 81 60 16227 YDR381W intron no 866 441 458 34.150786 293.168763 163.6597745 2.213941948 0.107697 81 61 21566 copy of SH5226 no 801 34.228743 327.885756 181.0572495 2.257815919 -0.169007 81 62 14970 MT_COX 2; ORF1 COX2 no 2427 151 167 50.744662 312.552753 181.6487075 2.259232312 0.022619 81 63 14808 MT_Lys; Arg1; Gly intergenic no 682 301 329 28.138409 326.684663 177.411536 2.248981856 -0.285314 81 64 17590 YJL191W intron no 508 321 340 28.161882 286.405541 157.2837115 2.196683749 -0.08205 81 65 7717 snoRNA cluster1 snR77 yes 1574 381 400 30.23433 304.580251 167.4072905 2.223774367 -0.081301 81 66 17855 YKR095W intron no 175 81 93 42.589187 272.667133 157.62816 2.197633806 0.366213 81 67 11576 "rRNA(18S,5.8S,25S)" 25S yes 7956 4766 4783 44.573693 285.962385 165.268039 2.218188874 0.237665 81 68 1315 Ile3 IleTAT_ii 5_flank no 333 30.035412 315.986401 173.0109065 2.238073482 -0.155883 81 69 19976 YBL087C spliced yes 40 13 30 31.82916 277.663782 154.746471 2.189620754 0.142729 81 70 4526 U3b (snR17b) U3b yes 662 186 202 108.495857 334.511926 221.5038915 2.345381361 0.20531 81 71 6652 snR48 snR48 yes 313 86 107 27.146635 302.51373 164.8301825 2.217036739 -0.211962 81 72 4796 snR5 snR5 yes 404 151 173 28.76553 314.238903 171.5022165 2.234269737 -0.190782 81 73 10941 "rRNA(18S,5.8S,25S)" 18S yes 7956 1591 1607 123.876425 334.119902 228.9981635 2.359831999 0.296551 81 74 20726 YJL177W spliced yes 40 13 28 37.929446 313.795412 175.862429 2.245173067 -0.036906 81 75 6007 snR37 5_flank no 586 28.270433 302.670906 165.4706695 2.218721024 -0.149628 81 76 5026 snR10 snR10 yes 445 161 178 40.022585 284.389658 162.2061215 2.21006724 0.242925 81 77 6866 snR56 5_flank no 288 44.35466 293.729318 169.041989 2.227994594 0.163456 81 78 1281 Ile2 IleTAT_i tRNA yes 333 41 53 39.008487 271.018949 155.013718 2.190370133 0.356912 81 79 16356 YDR500C intron no 439 401 416 37.600034 294.061825 165.8309295 2.219665535 0.140021 81 80 16198 YDR381C intron no 294 141 158 29.999815 299.536304 164.7680595 2.216873027 -0.058686 81 81 14581 MT_21S intronic no 4639 2926 2941 43.833909 265.950073 154.891991 2.190028962 0.438537 81 82 10661 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 191 208 86.089669 347.101536 216.5956025 2.335649635 -0.019309 81 83 5454 snR32 5_flank no 388 39.255102 287.352744 163.303923 2.212996618 0.212196 81 84 9346 RUF1 RUF1 yes 750 306 322 49.96986 278.794837 164.3823485 2.215855181 0.323568 81 85 1076 Gly3 GlyGCC 3_flank no 271 28.879434 301.987291 165.4333625 2.218623097 -0.113501 81 86 13042 MT_COX1 ai2 no 13084 4831 4853 28.843376 301.692506 165.267941 2.218188616 -0.114142 81 87 21913 copy of SH19566 no 401 37.113644 296.690953 166.9022985 2.222462318 0.112633 81 88 21478 copy of SH1445 no 314 70.392052 322.883825 196.6379385 2.293667313 0.052592 81 89 7889 snoRNA cluster1 intergenic no 1574 1241 1262 28.132094 313.274334 170.703214 2.232241698 -0.208373 81 90 1343 Ile3 IleTAT_ii intron/tRNA no 333 i59 48 75.261579 292.029037 183.645308 2.263979837 0.328333 81 91 17294 YHR141C intron no 541 401 418 30.867425 307.73211 169.2997675 2.228656362 -0.078616 81 92 21468 copy of SH1004 no 272 30.040857 301.488425 165.764641 2.219491897 -0.069219 81 93 19562 CBP1 2.2 CBP1 2.2 yes 401 341 359 34.843155 276.541345 155.69225 2.192266995 0.244662 81 94 11220 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2986 3009 34.070364 289.840669 161.9555165 2.209395745 0.13476 81 95 4995 snR10 snR10 yes 445 6 23 42.550617 283.554887 163.052752 2.212328133 0.256731 81 96 20220 YDR092W spliced yes 40 9 27 36.869963 288.743344 162.8066535 2.211672149 0.177009 81 97 12168 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7726 7743 31.505873 286.991122 159.2484975 2.202075343 0.071236 81 98 13776 MT_COB intronic no 7308 826 845 28.063875 273.185744 150.6248095 2.177896511 -0.025534 81 99 6822 snR52 snR52 yes 292 16 32 108.939984 320.854682 214.897333 2.332231026 0.301356 81 100 3423 Trp1 TrpCCA 5_flank no 306 39.24317 356.06119 197.65218 2.295901609 -0.38185 81 101 11824 "rRNA(18S,5.8S,25S)" 25S yes 7956 6006 6019 57.720705 264.48085 161.1007775 2.207097636 0.495111 81 102 6631 snR48 5_flank no 313 144.901713 340.179438 242.5405755 2.384784404 0.370682 81 103 7344 snR68 5_flank no 336 32.13873 287.907694 160.023212 2.204182983 0.086133 81 104 6445 snR45 snR45 yes 372 71 87 30.288251 284.645474 157.4668625 2.197189174 0.039258 82 2 1984 Lys2 LysCTT_ii 3_flank no 273 29.699112 319.646634 174.672873 2.242225464 -0.188846 82 3 7543 snR79 snR79 yes 284 56 73 31.51853 279.222622 155.370576 2.191368776 0.122181 82 4 6662 snR48 3_flank no 313 62.239883 399.794097 231.01699 2.363643921 -0.522255 82 5 14507 MT_21S 21S_rRNA3 yes 4639 1816 1835 29.861808 316.607167 173.2344875 2.238634356 -0.16555 82 6 710 Gln3 GlnTTG_ii 3_flank no 272 28.213346 331.402634 179.80799 2.254808986 -0.308936 82 7 17052 YGR214W intron no 555 181 201 35.670507 313.420364 174.5454355 2.241908496 -0.039352 82 8 12542 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 526 552 34.206464 299.628938 166.917701 2.222502394 0.054506 82 9 21716 copy of SH11501 no 7956 34.648275 292.488148 163.5682115 2.213698905 0.11943 82 10 15857 YDL079C intron no 392 61 87 33.273325 295.05994 164.1666325 2.21528489 0.077181 82 11 14602 MT_21S Sce1 no 4639 3241 3258 28.05476 275.353041 151.7039005 2.180996747 -0.035567 82 12 2445 Phe5 PheGAA_v 5_flank/tRNA no 291 30.374219 275.296029 152.835124 2.184223174 0.088134 82 13 4774 snR5 snR5 yes 404 41 53 111.705806 361.050353 236.3780795 2.3736072 0.054975 82 14 1830 Leu8 LeuTAG_i 3_flank no 301 35.013083 297.133156 166.0731195 2.220299343 0.084828 82 15 6559 snR47 5_flank no 299 47.342659 292.079784 169.7112215 2.229710559 0.188188 82 16 19148 YPL075W intron no 851 481 497 77.184335 420.911251 249.047793 2.396282697 -0.526451 82 17 8411 snoRNA cluster 5 snR190 yes 586 221 240 33.884703 277.76692 155.8258115 2.192639397 0.207394 82 18 2221 Phe1 PheGAA_i 5_flank no 292 32.092668 286.396985 159.2448265 2.202065332 0.094321 82 19 15392 YBL040C intron no 197 121 135 38.458941 292.60399 165.5314655 2.21888056 0.159725 82 20 9223 snR6 / U6 RNA 5_flank/U6 no 312 35.513715 281.925915 158.719815 2.200631149 0.22054 82 21 10974 "rRNA(18S,5.8S,25S)" 18S yes 7956 1756 1769 38567.49823 27403.56291 32985.53057 4.518323474 -0.424677 82 22 5976 snR36 snR36 yes 555 336 354 626.888642 1022.65874 824.773691 2.916334799 -0.142487 82 23 11266 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3216 3234 30.214995 297.27799 163.7464925 2.214172006 -0.037289 82 24 21250 YPL031C spliced yes 40 21 40 27.980828 307.330609 167.6557185 2.224418371 -0.185971 82 25 12928 MT_COX1 ai2 no 13084 3121 3140 30.79868 306.847297 168.8229885 2.227431584 -0.075642 82 26 14159 MT_COB intronic no 7308 6571 6588 33.587384 313.331543 173.4594635 2.239197999 -0.063567 82 27 1035 Gly3 GlyGCC 5_flank no 271 37.399644 293.369538 165.384591 2.218495044 0.143633 82 28 2286 Phe2 PheGAA_ii tRNA/intron no 292 26 i5 39.286501 333.463239 186.37487 2.270387354 -0.201836 82 29 17400 YIL069C intron no 509 341 358 33.309707 308.22573 170.7677185 2.232405776 -0.026402 82 30 10878 "rRNA(18S,5.8S,25S)" 18S yes 7956 1276 1289 2205.092496 2773.122814 2489.107655 3.39604368 -0.12836 82 31 1788 Leu8 LeuTAG_i 5_flank no 301 29.604374 298.805833 164.2051035 2.215386651 -0.068046 82 32 17482 YJL024C 5_exon no 177 1 13 68.529424 324.469995 196.4997095 2.293361913 0.029264 82 33 10049 RUF6 RUF6 yes 1251 91 110 32.092872 322.620519 177.3566955 2.248847588 -0.154614 82 34 1977 Lys2 LysCTT_ii 3_flank no 273 65.365372 364.36954 214.867456 2.332170642 -0.275849 82 35 8307 snoRNA cluster4 intergenic no 638 321 340 28.349655 314.757475 171.553565 2.234399747 -0.209025 82 36 5303 snR30 snR30 yes 801 366 378 40.849936 256.900318 148.875127 2.172822145 0.508228 82 37 19018 YOR182C intron no 511 241 263 30.504087 331.054562 180.7793245 2.257148759 -0.239413 82 38 12548 MT_ORF6 + ORF7 (hypothetical) 3_flank no 664 616 640 34.599754 312.761565 173.6806595 2.23975146 -0.046772 82 39 6819 snR52 snR52 yes 292 1 20 75.169177 335.644257 205.406717 2.312614641 -0.010869 82 40 148 Arg1 ArgACG_i 3_flank no 273 34.44251 355.592581 195.0175455 2.290073686 -0.395096 82 41 20444 YGL103W spliced yes 40 1 13 91.052258 317.904705 204.4784815 2.310647611 0.217026 82 42 1754 Leu7 LeuTAA tRNA yes 284 55 69 94.988641 289.928549 192.458595 2.284337311 0.455919 82 43 4613 snR3 5_flank no 395 32.253194 326.570791 179.4119925 2.253851469 -0.182626 82 44 1618 Leu5 LeuCAA_v 5_flank no 315 29.131032 336.909419 183.0202255 2.262499086 -0.305855 82 45 20964 YML026C spliced yes 40 1 18 36.178185 287.541927 161.860056 2.209139686 0.17947 82 46 5862 snR35 snR35 yes 740 496 513 38.005066 294.924426 166.464746 2.221322272 0.136571 82 47 21211 YOR096W spliced yes 40 17 33 37.685665 306.266689 171.976177 2.23546829 0.030359 82 48 11933 "rRNA(18S,5.8S,25S)" 25S yes 7956 6551 6566 77.440681 367.719784 222.5802325 2.347486592 -0.211833 82 49 9049 snR17a / U3a 3_flank no 690 32.899992 299.335969 166.1179805 2.220416643 0.038908 82 50 20856 YLR078C spliced yes 40 1 16 178.198375 771.4847 474.8415375 2.676548703 -1.087039 82 51 16376 YER003C intron/exon no 193 141 157 46.753047 305.822623 176.287835 2.246222344 0.060286 82 52 9823 RUF5-1 5_flank no 975 41.704408 335.534962 188.619685 2.275587015 -0.210319 82 53 4607 snR3 5_flank no 395 32.086236 287.972522 160.029379 2.20419972 0.084011 82 54 13967 MT_COB bi3 no 7308 3691 3715 28.384656 335.152611 181.7686335 2.259518942 -0.323332 82 55 803 Glu1 GluCTC tRNA yes 272 31 43 42.26376 293.58264 167.9232 2.225110702 0.159009 82 56 19951 YBL050W spliced yes 40 13 29 50.638271 333.312457 191.975364 2.2832455 -0.145671 82 57 12360 5S rRNA NTS2 no 1420 756 775 37.220109 310.431927 173.826018 2.240114781 -0.008519 82 58 19259 YPL143W intron no 625 61 77 81.049996 327.426595 204.2382955 2.310137177 0.085243 82 59 15838 YDL075W intron no 521 201 217 35.865316 295.684583 165.7749495 2.219518904 0.106863 82 60 15063 MT_COX 2; ORF1 ORF1exon1 yes 2427 1546 1563 31.972813 303.275689 167.624251 2.22433685 -0.015017 82 61 2427 Phe5 PheGAA_v 5_flank no 291 32.057841 292.542143 162.299992 2.210318498 0.0541 82 62 5153 snR13 5_flank no 324 187.893672 448.319115 318.1063935 2.502572398 0.020209 82 63 15146 MT_Thr1 tRNA yes 272 121 139 34.164837 318.800608 176.4827225 2.246702195 -0.099273 82 64 14227 MT_ATP9 ATP9 yes 431 301 322 32.144 291.750556 161.947278 2.209373653 0.061891 82 65 8451 snoRNA cluster 5 snR128 yes 586 421 437 57.907813 305.462459 181.685136 2.259319398 0.120004 82 66 15782 YDL029W 5_exon no 223 1 23 32.161483 350.158309 191.159896 2.281396786 -0.358323 82 67 5922 snR36 snR36 yes 555 66 78 40.288338 279.544732 159.916535 2.203893371 0.29154 82 68 4904 snR9 5_flank no 387 31.941709 299.479953 165.710831 2.219350895 0.007155 82 69 11608 "rRNA(18S,5.8S,25S)" 25S yes 7956 4926 4939 9313.117364 20867.8429 15090.48013 4.178703058 -1.711536 82 70 8161 snoRNA cluster 3; snR70 yes 743 316 328 93.230874 299.685999 196.4584365 2.293270683 0.368202 82 71 15326 YAL003W intron no 466 321 340 44.774425 313.511347 179.142886 2.253199566 -0.013981 82 72 12892 MT_COX1 ai1 no 13084 2581 2598 36.384988 323.180388 179.782688 2.254747869 -0.123042 82 73 10874 "rRNA(18S,5.8S,25S)" 18S yes 7956 1256 1273 2653.19433 4257.877435 3455.535883 3.538515407 -0.598615 82 74 2697 Pro4 ProTGG_iii 3_flank no 302 31.950161 296.750088 164.3501245 2.215770037 0.024292 82 75 21163 YNL302C spliced yes 40 1 15 53.076003 307.411824 180.2439135 2.255860608 0.077682 82 76 14391 MT_21S 5_flank/21S_rRNA3 no 4639 76 101 28.257886 316.025016 172.141451 2.235885459 -0.21981 82 77 11495 "rRNA(18S,5.8S,25S)" 25S yes 7956 4361 4379 119.445953 383.922359 251.684156 2.400855877 -0.031442 82 78 10040 RUF6 RUF6 yes 1251 46 62 70.63628 372.202096 221.419188 2.345215254 -0.289135 82 79 7310 snR66 snR66 yes 286 41 60 29.440027 299.438499 164.439263 2.216005522 -0.077754 82 80 7276 snR65 3_flank no 300 29.905978 286.142656 158.024317 2.198723922 0.012537 82 81 18179 YLR448W intron no 484 361 380 32.375291 339.962029 186.16866 2.269906573 -0.280378 82 82 3436 Trp1 TrpCCA tRNA yes 306 11 28 34.802656 283.325144 159.0639 2.201571626 0.198827 82 83 14285 MT_VAR1 VAR1 yes 1467 481 504 28.76568 315.938412 172.352046 2.236416443 -0.200708 82 84 6111 snR37 3_flank no 586 74.581875 306.641201 190.611538 2.280149186 0.204119 82 85 21427 Tyr1_2 spliced yes 40 1 17 78.891358 330.181728 204.536543 2.310770911 0.052008 82 86 2886 Pro8 ProTGG_vii 5_flank no 305 28.951959 301.723228 165.3375935 2.218371612 -0.109205 82 87 13560 MT_COX1 exon6 yes 13084 12601 12621 28.860904 293.814461 161.3376825 2.207735814 -0.077963 82 88 19569 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 81 98 30.732606 314.458766 172.595686 2.237029936 -0.122999 82 89 13581 MT_COX1 exon6 yes 13084 12916 12935 30.330777 281.09342 155.7120985 2.192322358 0.05816 82 90 17995 YLR287C intron no 530 81 100 29.744705 305.500316 167.6225105 2.224332341 -0.103903 82 91 1464 Leu2 LeuCAA_ii tRNA yes 314 50 67 27.041009 285.083396 156.0622025 2.193297732 -0.138995 82 92 8608 snR19 / U1 RNA U1 yes 868 536 552 51.300044 374.74037 213.020207 2.328420802 -0.442402 82 93 11119 "rRNA(18S,5.8S,25S)" 18S yes 7956 2481 2497 42.377756 306.399783 174.3887695 2.241518513 0.041121 82 94 41 Ala1 AlaAGC 3_flank no 273 61.591885 305.758902 183.6753935 2.264050979 0.13724 82 95 17548 YJL177W intron/exon no 417 361 377 76.899591 353.146099 215.022845 2.332484604 -0.120785 82 96 2302 Phe2 PheGAA_ii 3_flank no 292 75.312594 321.43506 198.373827 2.297484372 0.093823 82 97 21438 TH298 - control oligo; WTP_220 no 38.465536 287.633256 163.049396 2.212319194 0.20407 82 98 14377 MT_ORF9; ORF10 ORF10 yes 578 421 437 29.675714 289.850591 159.7631525 2.203476622 -0.016617 82 99 12433 5S rRNA NTS2 no 1420 1121 1140 28.037348 298.444334 163.240841 2.212828824 -0.143766 82 100 15293 MT_9S 9S yes 701 571 593 28.164004 315.060365 171.6121845 2.23454812 -0.217657 82 101 19658 SIR1 2.2 SIR1 2.2 yes 401 281 305 28.244423 327.381898 177.8131605 2.249963901 -0.285312 82 102 17749 YKL157W intron no 483 121 137 44.627799 311.806979 178.217389 2.250950077 0.000504 82 103 5052 snR10 3_flank no 445 33.71455 331.73573 182.72514 2.261798303 -0.203058 82 104 2001 Lys3 LysTTT_i 5_flank no 296 30.049459 313.250745 171.650102 2.234644066 -0.139386 83 2 4609 snR3 5_flank no 395 30.085388 326.308638 178.197013 2.25090042 -0.213331 83 3 9270 RUF1 5_flank no 750 28.243026 283.372479 155.8077525 2.192589063 -0.063403 83 4 20842 YLL050C spliced yes 40 17 31 64.629748 292.438947 178.5343475 2.251721781 0.267044 83 5 12509 MT_ORF6 + ORF7 (hypothetical) 5_flank no 664 31 59 28.264023 330.386402 179.3252125 2.253641354 -0.301408 83 6 2317 Phe3 PheGAA_iii 5_flank no 291 85.392931 312.592063 198.992497 2.298836702 0.22188 83 7 8457 snoRNA cluster 5 snR128 yes 586 451 468 37.613686 270.538994 154.07634 2.187735953 0.346216 83 8 19031 YOR234C 5_exon no 627 1 18 37.958585 303.93405 170.9463175 2.23285975 0.05238 83 9 6349 snR43 5_flank/snR43 no 409 36.563326 272.713083 154.6382045 2.189316798 0.314708 83 10 17369 YIL052C intron no 572 281 298 35.201691 316.460401 175.831046 2.24509556 -0.068686 83 11 16951 YGR027C 3_exon no 412 381 397 39.552838 287.201449 163.3771435 2.213191299 0.214357 83 12 8442 snoRNA cluster 5 snR128 yes 586 376 392 34.285869 260.3414 147.3136345 2.168242944 0.33897 83 13 16261 YDR424C intron no 196 81 101 26.873145 267.047987 146.960566 2.167200816 -0.076915 83 14 12634 MT_15S 15S yes 1848 1261 1287 29.118048 321.635309 175.3766785 2.243971841 -0.220898 83 15 15372 YBL027W intron no 484 201 220 35.355146 312.398306 173.876726 2.240241454 -0.034957 83 16 12803 MT_COX1 ai1 no 13084 1246 1266 31.605316 332.530675 182.0679955 2.260233611 -0.235723 83 17 7685 snoRNA cluster1 intergenic no 1574 221 240 31.830198 316.540373 174.1852855 2.241011465 -0.110997 83 18 6607 snR47 3_flank no 299 31.009223 291.382233 161.195728 2.207353528 0.026687 83 19 10212 RUF6 RUF6 yes 1251 906 920 32.176398 308.243481 170.2099395 2.230984917 -0.040877 83 20 16816 YGL178W intron no 740 101 117 32.253957 296.022899 164.138428 2.21521027 0.038691 83 21 15187 MT_COX3 cox3 no 1010 226 245 33.271396 303.647672 168.459534 2.226495595 0.010103 83 22 4779 snR5 snR5 yes 404 66 81 40.348848 294.813402 167.581125 2.224225102 0.143087 83 23 7683 snoRNA cluster1 intergenic no 1574 211 228 40.137542 332.945309 186.5414255 2.270775291 -0.194521 83 24 5772 snR35 snR35 yes 740 46 63 31.772174 293.984213 162.8781935 2.211862944 0.035699 83 25 11366 "rRNA(18S,5.8S,25S)" 25S yes 7956 3716 3733 15195.64758 16997.83692 16096.74225 4.20673799 -0.772021 83 26 19611 RNA14 1.1 RNA14 1.1 yes 401 121 137 38.39875 295.878677 167.1387135 2.223077055 0.128486 83 27 20922 YLR367W spliced yes 40 1 18 33.297904 319.832398 176.565151 2.24690499 -0.117901 83 28 6664 snR48 3_flank no 313 63.363686 424.996964 244.180325 2.387710667 -0.659703 83 29 20382 YFL034C-A spliced yes 40 17 33 43.407386 294.69883 169.053108 2.22802316 0.151343 83 30 16850 YGL183C exon/intron no 183 41 58 29.559589 298.716751 164.13817 2.215209587 -0.069078 83 31 7885 snoRNA cluster1 snR73/intergenic no 1574 1221 1237 33.799071 290.832289 162.31568 2.210360476 0.120123 83 32 8999 snR17a / U3a U3a yes 690 281 300 27.945264 284.269264 156.107264 2.193423112 -0.084078 83 33 21524 copy of SH3559 no 289 56.913403 299.693983 178.303693 2.251160338 0.164216 83 34 7844 snoRNA cluster1 snR74 yes 1574 1016 1034 36.514786 310.414729 173.4647575 2.239211253 -0.010111 83 35 15452 YBL087C intron no 604 201 218 30.442986 276.55937 153.501178 2.186111713 0.085551 83 36 8075 snoRNA cluster 2 snR61 yes 739 611 628 34.622698 282.752833 158.6877655 2.200543445 0.197136 83 37 8702 LSR1 / U2 RNA U2 yes 1375 151 169 31.504 321.466979 176.4854895 2.246709004 -0.15343 83 38 20831 YKR094C spliced yes 40 21 38 32.475665 274.086122 153.2808935 2.185488023 0.187604 83 39 19942 YBL040C spliced yes 40 1 18 32.389758 310.613001 171.5013795 2.234267618 -0.057066 83 40 15276 MT_9S 9S yes 701 316 343 30.249981 360.456229 195.353105 2.290820318 -0.453155 83 41 1682 Leu6 LeuGAG 5_flank no 282 40.449688 276.834756 158.642222 2.200418784 0.319124 83 42 5037 snR10 snR10 yes 445 216 230 107.778349 360.66911 234.2237295 2.369630892 0.032543 83 43 4003 SRP 5_flank no 875 38.271954 286.452264 162.362109 2.210484684 0.212149 83 44 2570 Pro2 ProTGG_i tRNA yes 303 56 70 73.174489 300.135818 186.6551535 2.271039985 0.249015 83 45 8271 snoRNA cluster4 snR67 yes 638 141 160 31.947789 297.327354 164.6375715 2.216528951 0.020636 83 46 1096 Gly4 GlyTCC 5_flank no 272 31.762401 297.169437 164.465919 2.216075916 0.015537 83 47 282 Arg4 ArgCCT tRNA yes 272 6 22 39.525929 297.904351 168.71514 2.227154057 0.112063 83 48 20458 YGL178W spliced yes 40 13 30 29.19343 285.347155 157.2702925 2.196646695 -0.021225 83 49 6936 snR58 snR58 yes 296 41 58 54.448737 308.16052 181.3046285 2.258408891 0.078962 83 50 19662 SIR1 2.2 SIR1 2.2 yes 401 361 378 32.42286 287.738904 160.080882 2.204339468 0.096403 83 51 15402 YBL050W intron no 216 141 158 30.224749 317.478824 173.8517865 2.240179158 -0.157997 83 52 2425 Phe4 PheGAA_iv 3_flank no 291 41.589076 270.354462 155.971769 2.193045998 0.387843 83 53 10326 RUF7 RUF7 yes 700 241 255 53.146834 327.252203 190.1995185 2.279209413 -0.083824 83 54 2079 Lys4 LysTTT_ii tRNA yes 296 38 52 53.387088 292.33774 172.862414 2.237700574 0.211591 83 55 468 Asp2 AspGTC_ii 5_flank no 272 32.399449 286.887211 159.64333 2.203150778 0.101107 83 56 2459 Phe5 PheGAA_v tRNA yes 291 48 62 38.628513 281.829711 160.229112 2.204741426 0.256194 83 57 859 Glu2 GluTTC_i tRNA/3_flank no 272 62 74 55.016993 279.271404 167.1441985 2.223091307 0.339684 83 58 10132 RUF6 RUF6 yes 1251 506 520 41.474374 292.279466 166.87692 2.222396276 0.169718 83 59 20666 YIL069C spliced yes 40 1 20 33.71417 301.992987 167.8535785 2.224930604 0.029081 83 60 14788 MT_Lys; Arg1; Gly 5_flank no 682 1 29 29.833299 312.382975 171.108137 2.233270663 -0.141817 83 61 21017 YMR033W spliced yes 40 13 32 31.943986 285.821973 158.8829795 2.201077375 0.093173 83 62 11358 "rRNA(18S,5.8S,25S)" 25S yes 7956 3676 3689 1565.735204 1486.987353 1526.361279 3.18365734 0.413973 83 63 11945 "rRNA(18S,5.8S,25S)" 25S yes 7956 6611 6630 18098.19862 17571.93181 17835.06521 4.251274702 -0.613477 83 64 13037 MT_COX1 ai2 no 13084 4756 4775 32.009071 309.270929 170.64 2.232080842 -0.05126 83 65 7108 snR63 snR63 yes 455 46 65 29.990979 296.219912 163.1054455 2.212468461 -0.038495 83 66 13598 MT_ATP8/AAP1 MT_AAP1 yes 347 106 127 32.026733 293.249593 162.638163 2.21122246 0.048639 83 67 18748 YNL162W intron no 612 281 296 34.005685 293.197677 163.601681 2.213787762 0.10569 83 68 11258 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3176 3189 1342.187757 1494.499199 1418.343478 3.151781416 0.204933 83 69 13501 MT_COX1 intronic no 13084 11716 11737 31.573602 283.254448 157.414025 2.197043424 0.097608 83 70 4578 U3b (snR17b) U3b yes 662 446 461 129.126693 353.027594 241.0771435 2.382156037 0.206242 83 71 13789 MT_COB intronic no 7308 1021 1042 28.873862 306.610835 167.7423485 2.224642719 -0.141612 83 72 1790 Leu8 LeuTAG_i 5_flank no 301 28.51332 279.107219 153.8102695 2.186985333 -0.028408 83 73 17318 YHR203C 3_exon no 369 341 353 86.911258 297.024317 191.9677875 2.28322836 0.352981 83 74 16492 YER117W 5_exon no 571 21 35 262.954922 464.819951 363.8874365 2.560967061 0.259691 83 75 10478 RUF8 RUF8 yes 1151 316 332 29.946703 282.710797 156.32875 2.194038855 0.030719 83 76 7908 snoRNA cluster1 intergenic no 1574 1336 1355 28.191977 296.896693 162.544335 2.210971838 -0.128297 83 77 3274 Thr2 ThrCGT 5_flank no 272 30.424038 291.434529 160.9292835 2.206635078 0.006462 83 78 15632 YBR181C 3_exon no 452 421 433 64.4818 292.409114 178.445457 2.251505496 0.266484 83 79 15269 MT_9S 9S yes 701 211 233 29.360566 321.706564 175.533565 2.244360173 -0.212644 83 80 12316 5S rRNA NTS2 no 1420 536 548 81.767279 320.544351 201.155815 2.303532592 0.140489 83 81 21455 copy of SH464 no 271 81.864809 320.787816 201.3263125 2.303900539 0.139248 83 82 5429 snR31 snR31/3_flank no 425 32.639062 299.045472 165.842267 2.219695226 0.032381 83 83 1423 Leu1 LeuCAA_i 3_flank no 315 30.802904 311.331002 171.066953 2.23316612 -0.102208 83 84 5095 snR11 snR11 yes 458 76 88 467.735314 635.07129 551.403302 2.741469362 0.319986 83 85 2523 Pro1 ProAGG 3_flank no 272 65.09772 310.233925 187.6658225 2.273385187 0.12026 83 86 20598 YHR041C spliced yes 40 5 21 52.344104 374.420406 213.382255 2.3291583 -0.433052 83 87 14368 MT_ORF9; ORF10 intergenic no 578 286 307 28.941651 298.940233 163.940942 2.214687426 -0.096653 83 88 9816 RUF4 3_flank no 988 28.762562 274.684014 151.723288 2.181052246 0.006387 83 89 5326 snR30 snR30 yes 801 481 493 185.442148 586.739357 386.0907525 2.5866894 -0.522601 83 90 3449 Trp1 TrpCCA tRNA yes 306 44 58 130.041073 345.226542 237.6338075 2.375908227 0.259479 83 91 13368 MT_COX1 intronic no 13084 9721 9740 29.195432 298.511667 163.8535495 2.214455854 -0.081177 83 92 5123 snR11 snR11 yes 458 216 235 28.393871 317.571371 172.982621 2.238002473 -0.223784 83 93 20243 YDR367W spliced yes 40 9 26 36.066353 285.015772 160.5410625 2.205586133 0.199996 83 94 12794 MT_COX1 ai1 no 13084 1111 1133 29.698357 308.941695 169.320026 2.228708326 -0.126155 83 95 4198 telomerase RNA telomerase yes 1501 26 43 35.470174 291.963681 163.7169275 2.214093586 0.133572 83 96 475 Asp2 AspGTC_ii 5_flank no 272 33.304571 258.59487 145.9497205 2.164203268 0.314576 83 97 7303 snR66 snR66 yes 286 6 23 57.286255 294.561639 175.923947 2.24532496 0.210869 83 98 8420 snoRNA cluster 5 snR190 yes 586 266 283 49.268832 335.983914 192.626373 2.284715747 -0.174472 83 99 11077 "rRNA(18S,5.8S,25S)" 18S yes 7956 2271 2286 334.233157 578.371203 456.30218 2.659252544 0.103034 83 100 17900 YLR061W intron no 489 61 77 36.989435 326.237779 181.613607 2.259148384 -0.147846 83 101 1751 Leu7 LeuTAA tRNA yes 284 e2 52 33.466761 273.114596 153.2906785 2.185515747 0.225533 83 102 12838 MT_COX1 ai1 no 13084 1771 1792 28.089356 338.757782 183.423569 2.26345514 -0.353952 83 103 9769 RUF4 RUF4 yes 988 621 633 42.543659 280.030878 161.2872685 2.207600087 0.291658 83 104 3437 Trp1 TrpCCA tRNA yes 306 16 32 37.08214 288.916564 162.999352 2.212185878 0.177902 84 2 17503 YJL136C 5_exon no 560 21 37 42.45361 317.945829 180.1997195 2.255754111 -0.060087 84 3 2158 Met2 MetCAT_ii 5_flank no 272 28.500485 304.960381 166.730433 2.222014878 -0.14707 84 4 9825 RUF5-1 5_flank no 975 26.62204 315.981397 171.3017185 2.23376172 -0.300283 84 5 12415 5S rRNA NTS2 no 1420 1031 1048 35.662578 303.397672 169.530125 2.229246882 0.040876 84 6 14073 MT_COB bi4 no 7308 5281 5301 35.698142 362.592145 199.1451435 2.29916972 -0.44519 84 7 7380 snR68 snR68/3_flank no 336 41.328093 301.315845 171.321969 2.233813057 0.084319 84 8 13052 MT_COX1 ai2 no 13084 4981 5000 36.135627 330.541986 183.3388065 2.2632544 -0.186601 84 9 7251 snR65 snR65 yes 300 31 48 32.833864 310.262752 171.548308 2.234386439 -0.048639 84 10 14550 MT_21S 21S_rRNA3 yes 4639 2461 2487 31.405458 331.986405 181.6959315 2.259345203 -0.234302 84 11 5697 snR34 snR34 yes 750 406 422 31.859958 241.274799 136.5673785 2.135346973 0.337569 84 12 9086 snR14 / U4 RNA U4 yes 360 46 62 32.294305 268.214617 150.254461 2.176827375 0.218077 84 13 2605 Pro3 ProTGG_ii 5_flank no 303 42.47555 301.223051 171.8493005 2.235147769 0.088189 84 14 11764 "rRNA(18S,5.8S,25S)" 25S yes 7956 5706 5723 176.856054 786.404502 481.630278 2.682713781 -1.130665 84 15 18342 YML124C intron no 398 161 177 31.287961 289.933178 160.6105695 2.205774122 0.04521 84 16 10101 RUF6 RUF6 yes 1251 351 370 33.532119 308.91044 171.2212795 2.233557738 -0.02913 84 17 17043 YGR214W 5_exon no 555 1 16 33.763609 286.407029 160.085319 2.204351506 0.147257 84 18 14530 MT_21S 21S_rRNA3 yes 4639 2161 2183 27.869285 306.585888 167.2275865 2.223307922 -0.188947 84 19 2745 Pro5 ProTGG_iv 3_flank no 303 32.052656 294.055945 163.0543005 2.212332258 0.044428 84 20 11977 "rRNA(18S,5.8S,25S)" 25S yes 7956 6771 6789 190.915868 510.796733 350.8563005 2.54512928 -0.223842 84 21 5854 snR35 snR35 yes 740 456 478 30.016629 311.003107 170.509868 2.231749518 -0.127269 84 22 14307 MT_VAR1 VAR1 yes 1467 811 833 33.965645 308.608196 171.2869205 2.233724201 -0.021392 84 23 483 Asp2 AspGTC_ii 5_flank no 272 43.919847 287.663529 165.791688 2.219562753 0.219428 84 24 9555 RUF3 RUF3 yes 631 161 173 2447.915482 11938.40549 7193.160488 3.85691975 -2.410337 84 25 11624 "rRNA(18S,5.8S,25S)" 25S yes 7956 5006 5023 65.648042 321.110523 193.3792825 2.286409945 0.036923 84 26 7970 snoRNA cluster 2 5_flank/snR57 no 739 86 102 33.33579 295.277731 164.3067605 2.215655433 0.077781 84 27 6291 snR42 snR42 yes 551 236 252 63.462269 325.150019 194.306144 2.288486533 -0.007559 84 28 3627 Val1 ValAAC_i 3_flank no 274 38.462397 373.021912 205.7421545 2.313323283 -0.512327 84 29 4892 snR8 3_flank no 390 37.664705 314.711357 176.188031 2.245976402 -0.045689 84 30 10207 RUF6 RUF6 yes 1251 881 898 31.840703 294.599856 163.2202795 2.212774117 0.034098 84 31 18204 YML024W intron no 498 381 400 27.99403 313.955243 170.9746365 2.232931689 -0.217508 84 32 14615 MT_21S Sce1 no 4639 3436 3457 28.170767 299.699311 163.935039 2.214671788 -0.141977 84 33 16869 YGL187C intron no 442 241 259 30.365485 301.408002 165.8867435 2.219811682 -0.057504 84 34 287 Arg4 ArgCCT tRNA yes 272 31 46 34.593316 293.169967 163.8816415 2.214530305 0.113018 84 35 2310 Phe2 PheGAA_ii 3_flank no 292 30.500214 303.247057 166.8736355 2.222387728 -0.064081 84 36 9408 RUF1 3_flank no 750 32.555063 288.7323 160.6436815 2.205863648 0.094307 84 37 2139 Met1 MetCAT_i 3_flank no 273 34.562585 326.716653 180.639619 2.256813009 -0.158141 84 38 4140 SRP SRP yes 875 591 607 44.802121 331.445923 188.124022 2.274444255 -0.162904 84 39 9560 RUF3 RUF3 yes 631 186 202 38.476711 323.024408 180.7505595 2.25707965 -0.116589 84 40 7039 snR62 5_flank/snR62 no 300 32.208016 272.343123 152.2755695 2.182630232 0.190708 84 41 10845 "rRNA(18S,5.8S,25S)" 18S yes 7956 1111 1128 1100.194052 2258.21683 1679.205441 3.225103833 -0.706696 84 42 8900 LSR1 / U2 RNA U2 yes 1375 1141 1157 32.062093 253.004932 142.5335125 2.153916988 0.284602 84 43 2522 Pro1 ProAGG 3_flank no 272 36.076634 327.950772 182.013703 2.260104085 -0.16476 84 44 6711 snR49 snR49 yes 365 81 97 38.022823 317.870606 177.9467145 2.250289974 -0.072734 84 45 12804 MT_COX1 ai1 no 13084 1261 1282 27.761452 286.416216 157.088834 2.196145316 -0.104352 84 46 14621 MT_21S Sce1 no 4639 3526 3546 31.621083 307.562509 169.591796 2.229404839 -0.052411 84 47 8455 snoRNA cluster 5 snR128 yes 586 441 453 53.424621 293.870784 173.6477025 2.239669042 0.197957 84 48 9624 RUF3 3_flank no 631 29.100189 315.698698 172.3994435 2.23653586 -0.187237 84 49 16967 YGR034W intron no 454 121 137 36.624484 289.549358 163.086921 2.212419134 0.167354 84 50 17865 YLL050C intron no 279 101 118 36.264849 304.648305 170.456577 2.231613763 0.037644 84 51 2791 Pro6 ProTGG_v tRNA-intron no 302 i20 i26 45.640919 294.362921 170.00192 2.230453826 0.161617 84 52 18833 YNL302C intron no 651 481 493 47.382096 289.043632 168.212864 2.225859205 0.216969 84 53 6123 snR39B 5_flank no 296 33.929669 329.666782 181.7982255 2.25958964 -0.184963 84 54 19106 YOR312C intron no 507 341 359 30.230037 294.322252 162.2761445 2.210254681 -0.018372 84 55 19063 YOR293W 5_exon no 537 21 37 59.714325 328.362684 194.0385045 2.287887919 -0.054145 84 56 4614 snR3 5_flank/snR3 no 395 32.729856 293.645209 163.1875325 2.212686976 0.068834 84 57 3327 Thr3 ThrTGT_i 5_flank no 272 31.100143 319.307588 175.2038655 2.243543684 -0.142115 84 58 4076 SRP SRP yes 875 271 287 318.633307 575.655635 447.144471 2.650447865 0.058888 84 59 12177 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7771 7790 29.627989 323.777335 176.702662 2.247243092 -0.21499 84 60 3148 Ser4 SerGCT 3_flank no 301 29.768566 283.433373 156.6009695 2.194794446 0.018049 84 61 19592 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 141 162 29.834046 299.538259 164.6861525 2.216657083 -0.064484 84 62 13433 MT_COX1 intronic no 13084 10696 10717 31.878913 303.05606 167.4674865 2.223930502 -0.016755 84 63 479 Asp2 AspGTC_ii 5_flank no 272 67.661413 319.994506 193.8279595 2.287416424 0.058173 84 64 7071 snR62 3_flank no 300 33.921328 309.254716 171.588022 2.234486968 -0.027105 84 65 20197 YDR005C spliced yes 40 17 36 29.881157 294.495189 162.188173 2.210019182 -0.031574 84 66 12711 MT_ORF 8 ORF8 yes 491 331 355 29.89017 312.019791 170.9549805 2.232881758 -0.137686 84 67 17117 YHR010W intron no 661 61 79 31.883557 302.239255 167.061406 2.222876132 -0.011634 84 68 16748 YGL076C intron no 559 381 399 31.764172 306.496266 169.130219 2.228221211 -0.041303 84 69 9553 RUF3 RUF3 yes 631 151 167 37.575865 287.225957 162.400911 2.210588461 0.197883 84 70 18409 YMR125W intron no 422 321 340 45.191124 308.484632 176.837878 2.247575295 0.031674 84 71 11502 "rRNA(18S,5.8S,25S)" 25S yes 7956 4396 4411 56.543973 290.55353 173.5487515 2.239421494 0.242464 84 72 16234 YDR381W intron no 866 581 595 36.317683 278.991733 157.654708 2.197706944 0.255665 84 73 18044 YLR333C intron no 523 161 178 39.819315 324.89479 182.3570525 2.260922564 -0.128515 84 74 19617 RNA14 1.1 RNA14 1.1 yes 401 241 253 66.595908 316.212965 191.4044365 2.281952 0.080836 84 75 12338 5S rRNA NTS2 no 1420 646 665 37.64867 310.252348 173.950509 2.240425704 -0.005857 84 76 11880 "rRNA(18S,5.8S,25S)" 25S yes 7956 6286 6304 45.5559 297.988773 171.7723365 2.234953223 0.127771 84 77 7582 snR189 5_flank/snR189 no 389 26.583455 301.527469 164.055462 2.214990694 -0.240187 84 78 19851 Negative Control no 60 NA #VALUE! 34.798706 271.5623 153.180503 2.185203491 0.276781 84 79 3731 Val3 ValCAC 3_flank no 273 27.352 301.701935 164.5269675 2.216237093 -0.196674 84 80 954 Gly1 GlyCCC_i tRNA yes 272 21 37 35.849006 307.680802 171.764904 2.234934431 0.008391 84 81 10855 "rRNA(18S,5.8S,25S)" 18S yes 7956 1161 1176 208.689362 435.302069 321.9957155 2.507850093 0.172961 84 82 4414 telomerase RNA telomerase yes 1501 1106 1122 38.757981 300.240509 169.499245 2.229167768 0.088446 84 83 12064 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7206 7225 30.69522 298.483865 164.5895425 2.216402238 -0.028276 84 84 9203 snR7 U5 RNA 3_flank no 415 32.963514 283.595385 158.2794495 2.199424531 0.140378 84 85 8998 snR17a / U3a U3a yes 690 276 295 30.990731 303.346007 167.168369 2.223154105 -0.048022 84 86 21618 copy of SH7319 no 286 28.957429 349.330551 189.14399 2.276792546 -0.393756 84 87 7223 snR64 3_flank no 301 33.172122 294.25861 163.715366 2.214089443 0.079007 84 88 15307 YAL001C intron no 190 121 138 33.029356 305.811541 169.4204485 2.228965827 -0.010469 84 89 15340 YAL030W intron no 213 141 158 30.617662 291.705663 161.1616625 2.207261739 0.011374 84 90 20296 YEL012W spliced yes 40 1 18 36.254642 304.03384 170.144241 2.230817254 0.042517 84 91 10569 RUF8 RUF8 yes 1151 771 787 33.44333 273.364198 153.403764 2.185836016 0.22312 84 92 1945 Lys2 LysCTT_ii 5_flank no 273 34.532585 315.033303 174.782944 2.24249905 -0.065462 84 93 17362 YIL052C intron no 572 141 157 54.631923 326.412193 190.522058 2.279945264 -0.068992 84 94 5736 snR34 3_flank no 750 32.83538 273.855478 153.345429 2.185670835 0.200657 84 95 13289 MT_COX1 ai5a no 13084 8536 8552 30.406766 300.219923 165.3133445 2.218307912 -0.048814 84 96 392 Asn1 AsnGTT tRNA yes 274 40 54 65.354861 308.296996 186.8259285 2.271437149 0.137503 84 97 9612 RUF3 3_flank no 631 29.837133 282.995208 156.4161705 2.194281649 0.023684 84 98 14252 MT_Ser 3_flank no 290 256 284 26.211338 304.37272 165.292029 2.218251911 -0.274597 84 99 11130 "rRNA(18S,5.8S,25S)" 18S yes 7956 2536 2553 832.077318 714.289029 773.1831735 2.888282394 0.801201 84 100 12719 MT_ORF 8 3_flank no 491 451 479 28.009954 314.137227 171.0735905 2.23318297 -0.217981 84 101 20569 YHR010W spliced yes 40 17 31 56.828588 287.832953 172.3307705 2.23636283 0.268307 84 102 18034 YLR316C 3_exon no 168 121 140 31.55664 361.023322 196.289981 2.292898133 -0.445436 84 103 1024 Gly2 GlyCCC_ii 3_flank no 272 29.712573 274.998482 152.3555275 2.182858215 0.055354 84 104 16304 YDR450W intron no 535 361 377 66.147012 354.675846 210.411429 2.323069326 -0.205086 85 2 7032 snR62 5_flank no 300 26.932353 302.465414 164.6988835 2.216690655 -0.224063 85 3 7476 snR71 5_flank/snR71 no 290 30.502472 300.709875 165.6061735 2.219076522 -0.048534 85 4 193 Arg2 ArgACG_ii 3_flank no 273 30.37647 281.782105 156.0792875 2.193345274 0.05724 85 5 4919 snR9 snR9 yes 387 1 20 128.665126 386.203531 257.4343285 2.410666459 0.010583 85 6 3717 Val3 ValCAC tRNA/3_flank no 273 28.463238 288.230145 158.3466915 2.199608994 -0.073969 85 7 12492 MT_tRNA Pro 5_flank no 272 31 59 35.823754 311.233097 173.5284255 2.239370626 -0.02027 85 8 7828 snoRNA cluster1 intergenic no 1574 936 953 32.402751 285.843065 159.122908 2.201732707 0.107927 85 9 2183 Met2 MetCAT_ii tRNA yes 272 46 60 33.669402 267.249173 150.4592875 2.177419001 0.271808 85 10 17809 YKR057W exon/intron no 422 41 57 35.047375 328.000174 181.5237745 2.258933513 -0.167824 85 11 20928 YLR388W spliced yes 40 1 20 57.504648 322.708554 190.106601 2.278997197 -0.023685 85 12 4019 SRP 5_flank/SRP no 875 30.227887 256.056056 143.1419715 2.155766994 0.177107 85 13 19533 CBP1 1.2 CBP1 1.2 yes 401 161 180 28.629358 304.531489 166.5804235 2.221623962 -0.138186 85 14 16552 YER133W intron no 625 201 217 32.831847 285.528187 159.180017 2.201888547 0.123693 85 15 1245 Ile2 IleTAT_i 5_flank no 333 65.035829 334.633048 199.8344385 2.300670335 -0.068732 85 16 13491 MT_COX1 intronic no 13084 11566 11588 31.380743 308.40244 169.8915915 2.230171885 -0.065399 85 17 359 Arg5 ArgTCT 3_flank no 272 33.6282 287.261228 160.444714 2.205325413 0.137578 85 18 1078 Gly3 GlyGCC 3_flank no 271 33.841654 306.520613 170.1811335 2.230911412 -0.006132 85 19 15694 YBR220C exon/intron no 521 41 55 42.143608 283.626865 162.8852365 2.211881723 0.255144 85 20 852 Glu2 GluTTC_i tRNA yes 272 26 40 70.997195 316.258843 193.628019 2.286968202 0.107308 85 21 19907 YAL001C spliced yes 40 9 27 36.016404 324.7182 180.367302 2.256157809 -0.137235 85 22 4183 telomerase RNA 5_flank no 1501 29.796216 293.917846 161.857031 2.20913157 -0.030934 85 23 20352 YER117W spliced yes 40 1 20 27.634987 304.669633 166.15231 2.220506384 -0.193716 85 24 7300 snR66 5_flank/snR66 no 286 31.514514 329.462504 180.488509 2.256449557 -0.214006 85 25 3425 Trp1 TrpCCA 5_flank no 306 56.566429 331.162894 193.8646615 2.287498651 -0.094945 85 26 13639 MT_ATP6 ATP6 yes 980 391 412 29.44238 274.313796 151.878088 2.181495121 0.04448 85 27 9957 RUF5-1 RUF5-1 yes 975 591 606 42.612958 284.762803 163.6878805 2.214016525 0.244987 85 28 17168 YHR016C intron no 268 201 218 31.740385 322.011735 176.87606 2.247669056 -0.154519 85 29 6946 snR58 snR58/3_flank no 296 34.013625 281.056817 157.535221 2.197377667 0.18968 85 30 11473 "rRNA(18S,5.8S,25S)" 25S yes 7956 4251 4268 12864.77649 13473.51447 13169.14548 4.119557595 -0.588984 85 31 4222 telomerase RNA telomerase yes 1501 146 158 48.987917 304.569959 176.778938 2.247430521 0.082263 85 32 14690 MT_21S 3_flank no 4639 4561 4577 51.300938 307.899404 179.600171 2.254306746 0.064894 85 33 17208 YHR039C intron no 262 101 122 28.52489 293.538023 161.0314565 2.206910721 -0.094906 85 34 12651 MT_15S 15S yes 1848 1516 1537 30.610657 292.91842 161.7645385 2.208883323 0.003497 85 35 10161 RUF6 RUF6 yes 1251 651 665 34.719044 285.632931 160.1759875 2.20459741 0.178886 85 36 15336 YAL030W intron no 213 61 76 66.918457 303.442016 185.1802365 2.267594634 0.186076 85 37 3697 Val3 ValCAC 5_flank no 273 30.389203 308.134842 169.2620225 2.228559526 -0.097328 85 38 2587 Pro2 ProTGG_i 3_flank no 303 32.326834 298.371248 165.349041 2.21840168 0.026499 85 39 9329 RUF1 RUF1 yes 750 221 237 38.35651 355.577797 196.9671535 2.294393809 -0.381378 85 40 21273 YPL090C spliced yes 40 13 31 30.055058 290.206551 160.1308045 2.204474886 0.001484 85 41 14194 MT_COB exon6 yes 7308 7096 7113 34.041423 305.60198 169.8217015 2.229993188 0.003722 85 42 1845 Leu9 LeuTAG_ii 5_flank no 301 31.930639 351.17681 191.5537245 2.282290601 -0.367096 85 43 12741 MT_COX1 ai1 no 13084 316 337 31.861333 313.597559 172.729446 2.23736638 -0.087509 85 44 6698 snR49 snR49 yes 365 16 32 31.777874 299.549588 165.663731 2.219227438 0.001358 85 45 10460 RUF8 RUF8 yes 1151 226 240 47.831374 282.482503 165.1569385 2.217896824 0.281295 85 46 1923 Lys1 LysCTT_i tRNA/3_flank no 272 33.49744 276.893287 155.1953635 2.190878742 0.201191 85 47 6550 snR46 3_flank no 397 29.286084 306.817869 168.0519765 2.225443625 -0.128052 85 48 19345 YPL249C exon/intron no 337 41 57 32.983149 301.648092 167.3156205 2.223536488 0.022828 85 49 19428 YPR132W intron no 465 281 300 30.73138 294.148129 162.4397545 2.210692324 -0.000106 85 50 6782 snR50 snR50/3_flank no 290 28.538526 307.339375 167.9389505 2.225151435 -0.15818 85 51 2345 Phe3 PheGAA_iii intron/tRNA no 291 i14 49 323.551807 513.002556 418.2771815 2.621464173 0.283806 85 52 10095 RUF6 RUF6 yes 1251 321 337 34.03186 321.524672 177.778266 2.249878666 -0.121915 85 53 5209 snR13 3_flank no 324 28.291181 311.445764 169.8684725 2.230112782 -0.191707 85 54 16595 YFL034C intron no 421 261 278 30.345203 289.132222 159.7387125 2.20341018 0.018356 85 55 20329 YER074W spliced yes 40 9 26 34.464122 285.509697 159.9869095 2.204084449 0.174478 85 56 4268 telomerase RNA telomerase yes 1501 376 393 30.856267 303.375566 167.1159165 2.223017815 -0.052742 85 57 8172 snoRNA cluster 3; snR70 yes 743 371 392 33.141016 302.539602 167.840309 2.22489627 0.017512 85 58 1103 Gly4 GlyTCC 5_flank/tRNA no 272 33.432421 287.817364 160.6248925 2.20581285 0.12792 85 59 11476 "rRNA(18S,5.8S,25S)" 25S yes 7956 4266 4282 21747.58934 11941.39539 16844.49236 4.226457927 0.253363 85 60 18087 YLR344W 3_exon no 547 501 516 44.949067 293.151597 169.050332 2.228016028 0.170752 85 61 18142 YLR406C intron no 449 221 235 60.342035 296.888175 178.615105 2.251918183 0.205925 85 62 2160 Met2 MetCAT_ii 5_flank no 272 33.842606 336.857218 185.349912 2.267992384 -0.245466 85 63 11465 "rRNA(18S,5.8S,25S)" 25S yes 7956 4211 4229 22310.89984 15298.65258 18804.77621 4.274268169 -0.127226 85 64 15011 MT_COX 2; ORF1 COX2 no 2427 766 780 70.72368 319.384432 195.054056 2.290154986 0.081436 85 65 13979 MT_COB intronic no 7308 3871 3897 27.795829 308.364336 168.0800825 2.225516253 -0.20075 85 66 7128 snR63 snR63 yes 455 146 161 53.276459 286.941082 170.1087705 2.230726706 0.260269 85 67 9285 RUF1 RUF1 yes 750 1 17 37.964116 307.804331 172.8842235 2.237755364 0.017039 85 68 7608 snR189 snR189 yes 389 111 128 29.770475 280.569887 155.170181 2.190808267 0.031671 85 69 20272 YDR447C spliced yes 40 5 22 51.828457 337.808937 194.818697 2.289630634 -0.173465 85 70 14661 MT_21S 21S_rRNA4 yes 4639 4126 4143 31.339763 313.189397 172.26458 2.23619599 -0.095123 85 71 8630 snR19 / U1 RNA U1/3_flank no 868 29.029679 291.400547 160.215113 2.20470348 -0.057918 85 72 2108 Met1 MetCAT_i 5_flank no 273 28.706614 288.951905 158.8292595 2.200930511 -0.06407 85 73 5193 snR13 snR13/3_flank no 324 55.636187 300.372725 178.004456 2.250430874 0.151625 85 74 8187 snoRNA cluster 3; snR70/intergenic no 743 446 463 28.276029 287.466971 157.8715 2.198303735 -0.080691 85 75 3007 Ser2 SerAGA_ii 5_flank/tRNA no 282 55.269859 294.185636 174.7277475 2.242361878 0.203542 85 76 14411 MT_21S 21S_rRNA3 yes 4639 376 393 89.272112 341.826947 215.5495295 2.333547079 0.036777 85 77 5117 snR11 snR11 yes 458 186 203 57.990288 339.650104 198.820196 2.298460498 -0.150057 85 78 2891 Pro8 ProTGG_vii 5_flank no 305 28.9946 307.392576 168.193588 2.225809435 -0.141943 85 79 5684 snR34 snR34 yes 750 341 357 43.400155 309.429561 176.414858 2.246535159 0.017526 85 80 12181 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7791 7809 33.817505 297.932605 165.875055 2.21978108 0.063801 85 81 4947 snR9 snR9 yes 387 141 158 32.145585 272.717221 152.431403 2.183074447 0.186155 85 82 21418 Ser4 spliced yes 40 17 31 51.076436 323.747926 187.412181 2.272797815 -0.067746 85 83 16405 YER056C intron no 497 161 180 32.631038 287.97966 160.305349 2.204948014 0.101547 85 84 11705 "rRNA(18S,5.8S,25S)" 25S yes 7956 5411 5424 114.944731 343.013704 228.9792175 2.359796067 0.187171 85 85 6541 snR46 snR46/3_flank no 397 30.840768 281.59252 156.216644 2.193727304 0.081706 85 86 15508 YBR048W intron no 611 121 142 30.946636 295.049223 162.9979295 2.212182088 0.001551 85 87 15504 YBR048W exon/intron no 611 41 59 30.995647 338.54841 184.7720285 2.266636227 -0.288112 85 88 20962 YML025C spliced yes 40 17 36 30.934898 303.901939 167.4184185 2.223803235 -0.053276 85 89 11477 "rRNA(18S,5.8S,25S)" 25S yes 7956 4271 4284 4272.527227 2695.262228 3483.894728 3.542065024 0.744443 85 90 10757 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 671 687 78.994586 343.754221 211.3744035 2.325052395 -0.043051 85 91 8559 snR19 / U1 RNA U1 yes 868 291 308 31.737638 275.037967 153.3878025 2.185790826 0.157217 85 92 16524 YER131W intron no 461 101 120 29.039696 356.455785 192.7477405 2.284989296 -0.442481 85 93 602 Gln1 GlnCTG tRNA yes 272 51 65 37.984764 310.189189 174.0869765 2.240766283 -0.004477 85 94 13597 MT_ATP8/AAP1 5_flank/AAP1 no 347 91 112 33.365994 300.719486 167.04274 2.222827605 0.035226 85 95 6083 snR37 snR37 yes 586 331 350 28.130874 311.563388 169.847131 2.230058215 -0.198336 85 96 4856 snR8 snR8 yes 390 61 76 1664.048456 2482.26417 2073.156313 3.316632049 -0.313876 85 97 21012 YML124C spliced yes 40 17 33 47.486135 300.939924 174.2130295 2.241080633 0.106649 85 98 10935 "rRNA(18S,5.8S,25S)" 18S yes 7956 1561 1578 167.630863 339.116225 253.373544 2.403761266 0.490181 85 99 8145 snoRNA cluster 3; intergenic no 743 236 257 28.181543 285.295369 156.738456 2.195175564 -0.075794 85 100 11795 "rRNA(18S,5.8S,25S)" 25S yes 7956 5861 5879 37.099377 290.224727 163.662052 2.213947992 0.16693 85 101 15958 YDL130W intron no 401 141 157 62.366694 366.710952 214.538823 2.331505894 -0.312052 85 102 7526 snR79 5_flank no 284 31.547744 296.115071 163.8314075 2.214397162 0.015 85 103 2672 Pro4 ProTGG_iii tRNA/intron no 302 27 i2 29.66863 263.845851 146.7572405 2.166599537 0.108184 85 104 11832 "rRNA(18S,5.8S,25S)" 25S yes 7956 6046 6059 38098.578 5322.631346 21710.60467 4.336671919 2.282547 86 2 2993 Ser2 SerAGA_ii 5_flank no 282 30.725001 312.519374 171.6221875 2.234573433 -0.111867 86 3 16681 YGL030W intron no 330 81 98 35.175691 294.147971 164.661831 2.21659294 0.1117 86 4 2520 Pro1 ProAGG 3_flank no 272 48.76544 310.703915 179.7346775 2.254631877 0.028509 86 5 16611 YFL034C intron/exon no 214 161 176 57.691536 316.165666 186.928601 2.271675756 0.029742 86 6 9671 RUF4 RUF4 yes 988 131 150 28.412502 322.623198 175.51785 2.24432129 -0.252158 86 7 20336 YER074W-A spliced yes 40 9 26 32.087417 290.06556 161.0764885 2.207032153 0.070716 86 8 2294 Phe2 PheGAA_ii tRNA yes 292 47 61 42.330537 289.582561 165.956549 2.219994395 0.197485 86 9 1026 Gly2 GlyCCC_ii 3_flank no 272 34.433863 317.055736 175.7447995 2.244882483 -0.082462 86 10 5083 snR11 snR11 yes 458 16 32 106.44757 382.854628 244.651099 2.388547171 -0.107012 86 11 6433 snR45 snR45 yes 372 11 32 33.435526 296.707204 165.071365 2.217671743 0.069284 86 12 16592 YFL034C intron no 421 201 220 28.123079 271.234144 149.6786115 2.175159746 -0.013806 86 13 5241 snR30 snR30 yes 801 56 71 76.094125 326.830514 201.4623195 2.30419383 0.058915 86 14 8533 snR19 / U1 RNA U1 yes 868 161 178 32.595319 323.738608 178.1669635 2.250827178 -0.156731 86 15 1655 Leu5 LeuCAA_v 3_flank no 315 32.884288 296.220598 164.552443 2.216304334 0.057672 86 16 760 Gln4 GlnTTG_iii tRNA/3_flank no 272 37.154873 291.234225 164.194549 2.215358735 0.158968 86 17 2553 Pro2 ProTGG_i tRNA yes 303 1 13 252.278784 548.999368 400.639076 2.602753306 -0.097924 86 18 17643 YJR145C intron no 356 101 118 41.838033 339.383629 190.610831 2.280147575 -0.241147 86 19 5887 snR35 3_flank no 740 48.207023 306.57978 177.3934015 2.248937461 0.060954 86 20 18225 YML026C intron no 501 101 120 27.914864 298.750401 163.3326325 2.213072962 -0.151933 86 21 5391 snR31 snR31 yes 425 21 37 33.990094 295.835515 164.9128045 2.217254377 0.083366 86 22 11173 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2751 2766 270.247868 552.40996 411.328914 2.614189239 -0.040255 86 23 7566 snR189 5_flank no 389 31.719866 307.340501 169.5301835 2.229247032 -0.047825 86 24 443 Asp1 AspGTC_i tRNA yes 271 36 49 41.707243 287.033965 164.370604 2.215824151 0.22083 86 25 20287 YDR471W spliced yes 40 17 32 47.750322 306.285259 177.0177905 2.248016916 0.061154 86 26 5709 snR34 snR34 yes 750 466 486 31.691769 296.298818 163.9952935 2.214831384 0.018614 86 27 4871 snR8 snR8 yes 390 136 152 41.022489 296.959135 168.990812 2.227863093 0.124336 86 28 3285 Thr2 ThrCGT tRNA yes 272 26 40 30.094465 292.615543 161.355004 2.207782438 -0.012357 86 29 4677 snR4 5_flank no 386 33.445038 306.917212 170.181125 2.23091139 -0.014209 86 30 7946 snoRNA cluster1 3_flank no 1574 1526 1543 33.701164 308.917728 171.309446 2.233781311 -0.027107 86 31 15531 YBR048W 3_exon no 611 581 597 38.064441 290.841849 164.453145 2.216042183 0.172314 86 32 21203 YOL127W spliced yes 40 13 27 90.655541 347.146724 218.9011325 2.340248008 0.010562 86 33 13064 MT_COX1 intronic no 13084 5161 5177 28.743443 283.841486 156.2924645 2.193938039 -0.038316 86 34 7660 snoRNA cluster1 5_flank/snR78 no 1574 96 113 43.299964 301.321529 172.3107465 2.236312364 0.09003 86 35 10189 RUF6 RUF6 yes 1251 791 808 41.044055 308.361665 174.70286 2.242300015 0.019106 86 36 9522 RUF3 5_flank/RUF3 no 631 38.774576 316.467522 177.621049 2.249494431 -0.058586 86 37 15732 YBR230C intron no 197 101 120 30.337888 299.033831 164.6858595 2.216656311 -0.043893 86 38 13996 MT_COB intronic no 7308 4126 4148 34.284339 333.286142 183.7852405 2.264310631 -0.214504 86 39 9828 RUF5-1 5_flank no 975 32.087731 309.360582 170.7241565 2.232294976 -0.05096 86 40 18680 YNL112W intron no 1102 781 800 31.962 350.859036 191.410518 2.281965799 -0.364477 86 41 17364 YIL052C intron no 572 181 199 70.667208 383.018904 226.843056 2.355725489 -0.356878 86 42 7808 snoRNA cluster1 intergenic no 1574 836 854 31.778555 301.426192 166.6023735 2.221681184 -0.010119 86 43 211 Arg3 ArgCCG 5_flank no 272 29.690041 277.11455 153.4022955 2.185831858 0.043968 86 44 18419 YMR133W intron no 225 101 118 31.626306 310.759167 171.1927365 2.233485334 -0.071276 86 45 21918 copy of SH20001 no 40 78.964936 296.179221 187.5720785 2.273168191 0.313669 86 46 12726 MT_COX1 5_flank/exon1 no 13084 91 111 35.376697 310.357111 172.866904 2.237711854 -0.018504 86 47 12432 5S rRNA NTS2 no 1420 1116 1133 35.169648 301.742315 168.4559815 2.226486436 0.048634 86 48 20383 YFL034C-A spliced yes 40 21 38 34.925286 417.120707 226.0229965 2.354152628 -0.830986 86 49 6562 snR47 5_flank no 299 26.848124 307.254278 167.051201 2.222849602 -0.249848 86 50 15716 YBR220C 3_exon no 521 481 501 30.549585 280.481125 155.515355 2.191773276 0.072232 86 51 9254 snR6 / U6 RNA 3_flank no 312 28.471349 292.354092 160.4127205 2.205238804 -0.092443 86 52 17604 YJL205C intron no 243 101 118 30.344129 319.700305 175.022217 2.243093181 -0.166719 86 53 16360 YEL012W exon/intron no 223 41 58 36.190805 363.368024 199.7794145 2.300550736 -0.449102 86 54 11745 "rRNA(18S,5.8S,25S)" 25S yes 7956 5611 5628 2498.68562 7471.861949 4985.273785 3.697689014 -1.604927 86 55 12055 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7161 7179 36.607698 299.13376 167.870729 2.224974976 0.086685 86 56 4355 telomerase RNA telomerase yes 1501 811 828 30.990553 290.267153 160.628853 2.205823558 0.033117 86 57 2746 Pro5 ProTGG_iv 3_flank no 303 33.24414 304.312388 168.778264 2.227316516 0.00436 86 58 12150 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7636 7653 136.076366 417.725455 276.9009105 2.442324384 -0.111424 86 59 7242 snR65 5_flank/snR65 no 300 29.648836 311.81186 170.730348 2.232310726 -0.144924 86 60 21314 YPL241C spliced yes 40 25 39 41.892433 301.015104 171.4537685 2.234147035 0.088348 86 61 15087 MT_COX 2; ORF1 ORF1exon1 yes 2427 1906 1934 27.75218 316.276817 172.0144985 2.235565054 -0.240134 86 62 12438 5S rRNA NTS2 no 1420 1146 1166 35.837278 315.919896 175.878587 2.245212968 -0.06094 86 63 19608 RNA14 1.1 RNA14 1.1 yes 401 61 78 39.883643 303.864054 171.8738485 2.235209802 0.057541 86 64 775 Gln4 GlnTTG_iii 3_flank no 272 31.79449 304.518582 168.156536 2.225713752 -0.028388 86 65 9778 RUF4 RUF4 yes 988 666 681 43.015692 310.325132 176.670412 2.247163822 0.008331 86 66 14508 MT_21S 21S_rRNA3 yes 4639 1831 1845 66.661008 299.244678 182.952843 2.262339163 0.219919 86 67 19183 YPL079W intron no 521 341 362 28.897769 311.814928 170.3563485 2.231358323 -0.171735 86 68 17712 YKL081W intron no 426 241 262 31.916643 324.994981 178.455812 2.251530697 -0.175016 86 69 14673 MT_21S 21S_rRNA4 yes 4639 4306 4328 27.752758 315.827487 171.7901225 2.234998189 -0.237494 86 70 10660 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 186 203 34.58255 287.770905 161.1767275 2.207302334 0.158826 86 71 3200 Ser5 SerTGA 3_flank no 282 29.2805 302.616744 165.948622 2.21997365 -0.102867 86 72 18426 YMR142C 5_exon no 502 21 38 57.681877 328.238327 192.960102 2.28546752 -0.065547 86 73 21829 copy of SH16329 no 484 30.668844 331.843286 181.256065 2.258292547 -0.243063 86 74 21219 YOR122C spliced yes 40 21 40 30.489635 309.436694 169.9631645 2.230354809 -0.101645 86 75 9838 RUF5-1 5_flank/RUF5-1 no 975 28.512754 287.950149 158.2314515 2.199292812 -0.069974 86 76 7237 snR65 5_flank no 300 63.8255 313.420147 188.6228235 2.275594242 0.08738 86 77 7335 snR66 3_flank no 286 28.837518 294.3896 161.613559 2.208477794 -0.081827 86 78 9853 RUF5-1 RUF5-1 yes 975 71 87 29.145639 294.439255 161.792447 2.208958243 -0.065538 86 79 7898 snoRNA cluster1 intergenic no 1574 1286 1302 41.525294 286.559485 164.0423895 2.214956087 0.225053 86 80 19379 YPR043W intron no 503 161 178 39.942649 296.195286 168.0689675 2.225487532 0.129097 86 81 1483 Leu2 LeuCAA_ii 3_flank no 314 75.380829 333.23355 204.3071895 2.31028365 0.007791 86 82 2699 Pro4 ProTGG_iii 3_flank no 302 30.260027 295.997634 163.1288305 2.212530723 -0.027787 86 83 10262 RUF7 5_flank no 700 30.402541 295.61453 163.0085355 2.212210346 -0.020496 86 84 5861 snR35 snR35 yes 740 491 507 40.912031 307.270574 174.0913025 2.240777075 0.028716 86 85 16014 YDL137W intron no 432 361 377 104.466102 331.089398 217.77775 2.338013507 0.203966 86 86 2841 Pro7 ProTGG_vi tRNA yes 303 11 29 32.862 284.735842 158.798921 2.200847547 0.129768 86 87 5804 snR35 snR35 yes 740 206 223 37.167869 312.711698 174.9397835 2.242888585 -0.029092 86 88 10719 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 481 499 28.791051 295.302304 162.0466775 2.209640131 -0.088455 86 89 17092 YHL001W intron no 498 221 241 32.850753 288.247718 160.5492355 2.205608242 0.106841 86 90 9135 snR7 U5 RNA 5_flank no 415 32.529986 294.746574 163.63828 2.213884906 0.055545 86 91 7646 snoRNA cluster1 5_flank no 1574 26 43 34.071111 314.565269 174.31819 2.241342708 -0.067358 86 92 16891 YGL189C 3_exon no 269 241 255 47.459987 276.374536 161.9172615 2.20929315 0.340145 86 93 15290 MT_9S 9S yes 701 526 548 32.714822 370.853616 201.784219 2.304887198 -0.517207 86 94 14984 MT_COX 2; ORF1 COX2 no 2427 361 380 31.096974 296.659646 163.87831 2.214521477 -0.003411 86 95 12814 MT_COX1 ai1 no 13084 1411 1428 29.610162 296.383727 162.9969445 2.212179463 -0.052857 86 96 16859 YGL187C exon/intron no 442 41 63 33.844684 303.748446 168.796565 2.227363605 0.016357 86 97 1568 Leu4 LeuCAA_iv tRNA yes 314 11 22 56.644446 269.419516 163.031981 2.212272806 0.44165 86 98 13897 MT_COB intronic no 7308 2641 2665 26.844722 313.300989 170.0728555 2.230635004 -0.275997 86 99 12119 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7481 7499 52.234451 322.361884 187.2981675 2.272533528 -0.049987 86 100 7217 snR64 3_flank no 301 28.34972 287.759181 158.0544505 2.198806729 -0.078 86 101 20688 YIL133C spliced yes 40 9 26 42.682129 324.886628 183.7843785 2.264308594 -0.118558 86 102 11126 "rRNA(18S,5.8S,25S)" 18S yes 7956 2516 2531 5618.792212 1429.374522 3524.083367 3.547046174 2.127442 86 103 14717 MT_Cys; His 5_flank no 456 76 100 27.961249 367.412753 197.687001 2.295978113 -0.532972 86 104 16608 YFL034C intron no 214 101 118 38.683405 345.976877 192.330141 2.28404735 -0.305089 87 2 6136 snR39B snR39B yes 296 21 38 32.550755 347.346514 189.9486345 2.278636176 -0.334697 87 3 21678 copy of SH9841 no 975 27.76388 300.828256 164.296068 2.21562717 -0.169589 87 4 1512 Leu3 LeuCAA_iii tRNA/intron no 314 30 i10 28.522993 284.959097 156.741045 2.195182738 -0.055511 87 5 17803 YKL190W intron no 176 81 97 39.275015 322.46487 180.8699425 2.257366401 -0.10987 87 6 1828 Leu8 LeuTAG_i 3_flank no 301 37.346919 317.263545 177.305232 2.248721551 -0.069031 87 7 3240 Thr1 ThrAGT tRNA yes 273 56 72 54.635405 317.267545 185.951475 2.269399628 0.004584 87 8 12311 5S rRNA NTS2 no 1420 511 526 46.675033 284.676269 165.675651 2.219258686 0.25659 87 9 4008 SRP 5_flank no 875 34.234893 286.617033 160.425963 2.205274655 0.160382 87 10 3887 RNaseP 3_flank no 569 38.350752 333.422133 185.8864425 2.269247716 -0.204931 87 11 21565 copy of SH5225 no 801 29.452989 283.490439 156.471714 2.19443584 0.001222 87 12 675 Gln3 GlnTTG_ii 5_flank no 272 27.907617 280.881323 154.39447 2.188631741 -0.070207 87 13 20403 YFR031C-A spliced yes 40 5 21 41.629247 324.079218 182.8542325 2.262105017 -0.11529 87 14 9476 RUF2 RUF2 yes 468 221 237 45.907056 298.3532 172.130128 2.235856892 0.125512 87 15 19385 YPR043W intron no 503 281 297 30.669285 293.987454 162.3283695 2.210394426 -0.001212 87 16 14985 MT_COX 2; ORF1 COX2 no 2427 376 397 32.953531 308.754285 170.853908 2.232624917 -0.035088 87 17 18880 YNR053C intron/exon no 631 581 593 77.489696 330.542513 204.0161045 2.309664451 0.040666 87 18 18182 YLR448W intron/exon no 484 421 438 29.6348 282.398077 156.0164385 2.19317036 0.015925 87 19 15416 YBL059W exon/intron no 169 41 57 31.909902 302.71313 167.311516 2.223525834 -0.013656 87 20 9858 RUF5-1 RUF5-1 yes 975 96 118 27.984754 312.784757 170.3847555 2.231430735 -0.210977 87 21 12115 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7461 7478 58.804897 362.197443 210.50117 2.323254514 -0.306163 87 22 11554 "rRNA(18S,5.8S,25S)" 25S yes 7956 4656 4671 46.351186 298.226474 172.28883 2.236257122 0.128048 87 23 15582 YBR084C intron no 606 401 416 33.972967 300.73765 167.3553085 2.223639493 0.042542 87 24 1201 Ile1 IleAAT 5_flank no 274 31.884103 288.24731 160.0657065 2.204298296 0.075656 87 25 16444 YER074W intron no 566 441 456 38.017099 293.479822 165.7484605 2.219449503 0.149485 87 26 2510 Pro1 ProAGG tRNA yes 272 41 53 120.417737 379.95003 250.1838835 2.39825933 -0.003121 87 27 4974 snR10 5_flank no 445 36.401411 323.707531 180.054471 2.25540391 -0.127554 87 28 8960 snR17a / U3a U3a yes 690 86 103 30.507081 303.948429 167.227755 2.223308359 -0.068099 87 29 18296 YML073C intron no 515 121 138 28.686766 289.201412 158.944089 2.201244381 -0.066294 87 30 12093 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7351 7376 35.185795 292.557227 163.871511 2.214503458 0.12522 87 31 21801 copy of SH15071 no 2427 28.990786 312.197763 170.5942745 2.231964451 -0.170639 87 32 15226 MT_COX3 cox3 no 1010 811 827 35.328695 288.789839 162.059267 2.20967387 0.15893 87 33 20480 YGL226C-A spliced yes 40 5 26 31.02312 322.23916 176.63114 2.247067272 -0.165728 87 34 7595 snR189 snR189 yes 389 46 62 35.057404 289.177234 162.117319 2.209829413 0.152425 87 35 5113 snR11 snR11 yes 458 166 190 28.600243 292.754641 160.677442 2.205954909 -0.087248 87 36 1086 Gly4 GlyTCC 5_flank no 272 32.539802 295.314862 163.927332 2.214651371 0.052313 87 37 14987 MT_COX 2; ORF1 COX2 no 2427 406 428 34.38227 352.841401 193.6118355 2.286931902 -0.373554 87 38 6409 snR43 3_flank no 409 34.173601 237.749123 135.961362 2.133415507 0.466517 87 39 18896 YOL120C intron no 547 121 141 29.926131 327.204527 178.565329 2.251797138 -0.223921 87 40 20858 YLR078C spliced yes 40 9 21 2694.850568 6265.147757 4479.999163 3.651277933 -1.219669 87 41 9563 RUF3 RUF3 yes 631 201 217 37.749805 262.385537 150.067671 2.176287142 0.423337 87 42 20946 YLR448W spliced yes 40 1 15 121.715285 367.792463 244.753874 2.388729575 0.074689 87 43 17745 YKL157W exon/intron no 483 41 62 29.52686 312.951154 171.239007 2.233602701 -0.155944 87 44 5719 snR34 snR34 yes 750 516 534 38.484175 351.716846 195.1005105 2.290258406 -0.350958 87 45 16554 YER133W intron no 625 241 262 29.392296 309.478863 169.4355795 2.229004612 -0.140171 87 46 3355 Thr3 ThrTGT_i 3_flank no 272 72.502242 304.761807 188.6320245 2.275615426 0.207425 87 47 10686 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 316 333 35.11756 292.193152 163.655356 2.213930223 0.127494 87 48 2119 Met1 MetCAT_i 5_flank no 273 32.961877 384.561702 208.7617895 2.319651011 -0.617905 87 49 21649 copy of SH8769 no 1375 60.400158 358.538457 209.4693075 2.321120397 -0.269901 87 50 17802 YKL190W intron no 176 61 77 75.912234 353.095534 214.503884 2.33143516 -0.127431 87 51 7406 snR69 5_flank no 301 34.455321 265.646633 150.050977 2.176238828 0.306976 87 52 19227 YPL090C intron no 494 101 118 42.218485 348.915347 195.566916 2.291295387 -0.313084 87 53 10226 RUF6 RUF6 yes 1251 976 993 32.533543 296.66911 164.6013265 2.216433331 0.043689 87 54 10009 RUF5-1 3_flank no 975 34.627289 317.545804 176.0865465 2.245726176 -0.083959 87 55 3107 Ser4 SerGCT 5_flank no 301 30.901109 275.017844 152.9594765 2.184576389 0.116202 87 56 11664 "rRNA(18S,5.8S,25S)" 25S yes 7956 5206 5219 67.015651 330.090286 198.5529685 2.297876384 -0.022452 87 57 2827 Pro7 ProTGG_vi 5_flank no 303 37.321187 309.316077 173.318632 2.238845252 0.00179 87 58 20284 YDR471W spliced yes 40 5 21 35.535387 333.523162 184.5292745 2.266065274 -0.213218 87 59 6400 snR43 3_flank no 409 33.674633 285.763208 159.7189205 2.203356366 0.148645 87 60 3040 Ser2 SerAGA_ii 3_flank no 282 31.739315 311.178587 171.458951 2.234160162 -0.070035 87 61 13090 MT_COX1 ai3 no 13084 5551 5572 29.748792 298.393216 164.071004 2.215031836 -0.060421 87 62 13175 MT_COX1 exon4 yes 13084 6826 6845 29.752191 303.278247 166.515219 2.221453933 -0.090199 87 63 2489 Pro1 ProAGG 5_flank no 272 62.308831 361.03927 211.6740505 2.32566762 -0.274 87 64 5936 snR36 snR36 yes 555 136 148 97.638953 337.095194 217.3670735 2.337193758 0.12202 87 65 2341 Phe3 PheGAA_iii tRNA/intron no 291 31 i11 31.90283 285.229853 158.5663415 2.200211006 0.095645 87 66 2893 Pro8 ProTGG_vii 5_flank/tRNA no 305 32.005353 301.082593 166.543973 2.221528921 -0.000593 87 67 1266 Ile2 IleTAT_i tRNA/intron no 333 26 i5 30.053616 281.077086 155.565351 2.191912873 0.043973 87 68 11548 "rRNA(18S,5.8S,25S)" 25S yes 7956 4626 4641 559.076779 990.299306 774.6880425 2.889126853 -0.22701 87 69 20705 YJL024C spliced yes 40 1 18 30.01927 281.66274 155.841005 2.19268174 0.039425 87 70 6035 snR37 snR37 yes 586 91 107 56.34704 332.950587 194.6488135 2.289251761 -0.109945 87 71 9637 RUF4 5_flank no 988 38.674243 285.379328 162.0267855 2.209586816 0.225752 87 72 19417 YPR132W intron no 465 61 80 27.344129 307.494994 167.4195615 2.2238062 -0.222448 87 73 9808 RUF4 3_flank no 988 62.847695 299.993634 181.4206645 2.258686753 0.192575 87 74 20450 YGL137W spliced yes 40 1 18 30.851614 305.629159 168.2403865 2.225930257 -0.066525 87 75 9 Ala1 AlaAGC 5_flank no 273 28.823914 315.87066 172.347287 2.236404451 -0.198201 87 76 9029 snR17a / U3a U3a yes 690 431 448 28.886446 289.845192 159.365819 2.202395179 -0.058477 87 77 11142 "rRNA(18S,5.8S,25S)" 18S yes 7956 2596 2609 62.82508 299.862304 181.343692 2.258502453 0.193554 87 78 15247 MT_fMet tRNA yes 274 136 155 31.309013 328.990279 180.149646 2.255633413 -0.21317 87 79 2582 Pro2 ProTGG_i 3_flank no 303 29.598354 305.244548 167.421451 2.223811102 -0.107511 87 80 7519 snR79 5_flank no 284 29.850862 284.782659 157.3167605 2.196774995 0.016015 87 81 16522 YER131W intron no 461 61 78 39.238567 324.949089 182.093828 2.260295226 -0.131066 87 82 17295 YHR141C intron no 541 421 442 30.172332 285.463848 157.81809 2.198156783 0.029477 87 83 8362 snoRNA cluster4 3_flank no 638 596 612 40.553849 283.642889 162.098369 2.209778645 0.251475 87 84 3586 Val1 ValAAC_i 5_flank no 274 34.463042 277.717249 156.0901455 2.193375485 0.225395 87 85 17289 YHR141C intron no 541 301 318 32.513877 315.284803 173.89934 2.240297934 -0.092376 87 86 4306 telomerase RNA telomerase yes 1501 566 584 32.659915 288.449343 160.554629 2.205622831 0.09947 87 87 9174 snR7 U5 RNA U5 yes 415 141 155 57.999732 307.812115 182.9059235 2.262227771 0.100638 87 88 4180 telomerase RNA 5_flank no 1501 30.808618 273.362799 152.0857085 2.182088405 0.119583 87 89 7469 snR71 5_flank no 290 41.252179 289.679105 165.465642 2.218707829 0.194197 87 90 9587 RUF3 RUF3 yes 631 321 342 28.51737 312.425814 170.471592 2.231652017 -0.189176 87 91 11377 "rRNA(18S,5.8S,25S)" 25S yes 7956 3771 3784 12579.78436 6973.65234 9776.718351 3.990193104 0.480302 87 92 18752 YNL162W intron no 612 361 378 29.776725 279.002786 154.3897555 2.188618479 0.039455 87 93 18147 YLR406C intron no 449 321 335 59.219405 323.158869 191.189137 2.281463213 -0.016724 87 94 13921 MT_COB bi3 no 7308 3001 3027 30.686349 318.874043 174.780196 2.242492222 -0.150243 87 95 1048 Gly3 GlyGCC 5_flank no 271 59.176558 299.64225 179.409404 2.253845203 0.176235 87 96 12216 5S rRNA NTS2 no 1420 36 52 37.363351 291.585721 164.474536 2.21609867 0.158304 87 97 21599 copy of SH6670 no 313 31.305273 305.131964 168.2186185 2.225874062 -0.048285 87 98 8139 snoRNA cluster 3; intergenic no 743 206 218 82.272517 309.488871 195.880694 2.291991634 0.227682 87 99 5436 snR31 3_flank no 425 28.908689 288.163748 158.5362185 2.200128495 -0.049533 87 100 980 Gly1 GlyCCC_i 3_flank no 272 34.187328 335.341421 184.7643745 2.266618236 -0.23194 87 101 21201 YOL127W spliced yes 40 5 21 54.140339 324.180791 189.160565 2.276830603 -0.053917 87 102 9353 RUF1 RUF1 yes 750 341 362 33.763701 326.346439 180.05507 2.255405355 -0.161977 87 103 6087 snR37 snR37 yes 586 351 367 32.693944 304.111801 168.4028725 2.226349495 -0.000921 87 104 20070 YCR028C-A spliced yes 40 5 22 38.030698 355.026266 196.528482 2.2934255 -0.378335 88 2 11728 "rRNA(18S,5.8S,25S)" 25S yes 7956 5526 5546 38.012704 310.67675 174.344727 2.241408817 -0.008798 88 3 592 Gln1 GlnCTG tRNA yes 272 1 17 202.973145 427.994015 315.48358 2.49897676 0.181711 88 4 14095 MT_COB bi4 no 7308 5611 5633 28.435907 372.407579 200.421743 2.301944835 -0.559373 88 5 18790 YNL301C intron no 532 141 158 31.904917 277.905797 154.905357 2.190066437 0.143607 88 6 18758 YNL162W intron no 612 481 496 40.818124 304.068506 172.443315 2.236646363 0.057776 88 7 3516 Tyr1 TyrGTA_i 3_flank no 289 30.010404 302.617278 166.313841 2.220928394 -0.077159 88 8 17271 YHR123W intron no 191 121 141 33.752363 292.032773 162.892568 2.21190127 0.111095 88 9 3834 RNaseP RNaseP yes 569 136 150 39.50766 281.601685 160.5546725 2.205622949 0.267513 88 10 14339 MT_VAR1 VAR1 yes 1467 1291 1315 34.414636 331.688052 183.051344 2.262572922 -0.200728 88 11 15363 YBL027W 5_exon no 484 21 42 29.241426 290.681552 159.961489 2.204015438 -0.043336 88 12 10826 "rRNA(18S,5.8S,25S)" 18S yes 7956 1016 1034 38.987383 289.404317 164.19585 2.215362176 0.191693 88 13 6758 snR50 5_flank no 290 31.751381 273.286409 152.518895 2.18332365 0.166788 88 14 20169 YDL136W spliced yes 40 21 33 28.206004 291.927144 160.066574 2.20430065 -0.105046 88 15 12236 5S rRNA NTS2 no 1420 136 155 32.349401 315.283134 173.8162675 2.24009042 -0.094462 88 16 3842 RNaseP RNaseP yes 569 176 188 50.432803 308.272269 179.352536 2.253707522 0.057507 88 17 17918 YLR061W intron/exon no 489 421 443 31.174834 291.886901 161.5308675 2.208255525 0.029063 88 18 5690 snR34 snR34 yes 750 371 387 255.27811 606.719324 430.998717 2.634475977 -0.272482 88 19 14931 MT_Asn 5_flank/tRNA no 271 91 111 27.901053 299.489047 163.69505 2.214035547 -0.15599 88 20 3272 Thr2 ThrCGT 5_flank no 272 80.676674 315.335727 198.0062005 2.29667879 0.173256 88 21 2249 Phe1 PheGAA_i 3_flank no 292 32.327894 313.306555 172.8172245 2.237587026 -0.079196 88 22 10683 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 301 316 198.335027 467.079733 332.70738 2.522062434 -0.012498 88 23 17946 YLR128W intron no 194 81 97 56.032935 332.72435 194.3786425 2.288648545 -0.110221 88 24 1888 Leu9 LeuTAG_ii 3_flank no 301 34.312957 291.678653 162.995805 2.212176427 0.122252 88 25 14737 MT_Cys; His 3_flank no 456 376 402 32.316571 307.877087 170.096829 2.230696217 -0.036138 88 26 1149 His1 HisGTG 5_flank no 272 30.409542 298.637416 164.523479 2.216227884 -0.038987 88 27 21107 YNL069C spliced yes 40 5 21 35.83603 311.885532 173.860781 2.240201626 -0.025303 88 28 15123 MT_Phe 5_flank no 265 31 57 30.892983 318.779957 174.83647 2.242632029 -0.142692 88 29 10751 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 641 658 48.07866 333.48589 190.782275 2.280538023 -0.161766 88 30 2660 Pro4 ProTGG_iii 5_flank no 302 29.171606 298.150324 163.660965 2.213945108 -0.080833 88 31 12524 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 256 284 33.472278 319.665407 176.5688425 2.24691407 -0.114447 88 32 7784 snoRNA cluster1 intergenic no 1574 716 736 31.288044 315.336149 173.3120965 2.238828876 -0.109425 88 33 2168 Met2 MetCAT_ii 5_flank no 272 35.358024 293.440976 164.3995 2.215900492 0.119788 88 34 17040 YGR183C intron no 313 241 260 30.917896 324.501333 177.7096145 2.249710925 -0.184423 88 35 18983 YOR096W intron no 501 341 357 36.918984 289.048599 162.9837915 2.212144417 0.174947 88 36 3812 RNaseP RNaseP yes 569 26 43 30.428064 278.339101 154.3835825 2.188601115 0.076248 88 37 16192 YDR381C 5_exon no 294 21 40 38.398743 359.008163 198.703453 2.298205414 -0.407557 88 38 1110 Gly4 GlyTCC tRNA yes 272 26 38 42.215458 288.765872 165.490665 2.218773501 0.205127 88 39 3426 Trp1 TrpCCA 5_flank no 306 56.214278 384.782389 220.4983335 2.343405311 -0.474225 88 40 16034 YDL191W intron no 591 141 160 35.673331 306.993221 171.333276 2.233841719 0.011886 88 41 7790 snoRNA cluster1 snR75 yes 1574 746 765 37.530073 354.668634 196.0993535 2.292476162 -0.377458 88 42 13865 MT_COB intronic no 7308 2161 2184 29.413037 324.109802 176.7614195 2.247387481 -0.224483 88 43 6882 snR56 snR56 yes 288 41 58 29.351695 272.149449 150.750572 2.178258969 0.050235 88 44 11127 "rRNA(18S,5.8S,25S)" 18S yes 7956 2521 2534 5172.947775 3309.496299 4241.222037 3.627491009 0.638802 88 45 18794 YNL301C intron no 532 221 237 59.279064 320.670231 189.9746475 2.278695647 0.003183 88 46 4479 U3b (snR17b) 5_flank no 662 31.215829 267.794126 149.5049775 2.174655652 0.167391 88 47 21130 YNL130C spliced yes 40 21 37 38.087851 282.256973 160.172412 2.204587716 0.246614 88 48 19876 Negative Control no 60 NA #VALUE! 33.021213 357.770411 195.395812 2.290915251 -0.416004 88 49 9683 RUF4 RUF4 yes 988 191 210 28.968874 355.70837 192.338622 2.2840665 -0.438305 88 50 4953 snR9 snR9 yes 387 171 187 34.756433 264.055487 149.40596 2.174367922 0.327123 88 51 3377 Thr4 ThrTGT_ii 5_flank no 272 27.831144 288.299006 158.065075 2.198835922 -0.109181 88 52 10268 RUF7 5_flank no 700 105.950699 347.088386 226.5195425 2.355105676 0.107305 88 53 21369 Leu1_5 spliced yes 40 13 29 48.493234 309.212372 178.852803 2.252495751 0.039837 88 54 1616 Leu5 LeuCAA_v 5_flank no 315 30.89253 311.965717 171.4291235 2.234084605 -0.102924 88 55 17157 YHR012W 3_exon no 219 201 218 31.029178 311.926346 171.477762 2.234207807 -0.098083 88 56 106 Arg1 ArgACG_i 5_flank no 273 29.20173 299.247322 164.224526 2.215438017 -0.085064 88 57 7122 snR63 snR63 yes 455 116 135 31.339651 283.344208 157.3419295 2.196844472 0.089259 88 58 12705 MT_ORF 8 ORF8 yes 491 241 267 31.478686 303.01124 167.244963 2.223353047 -0.029675 88 59 10607 RUF8 3_flank no 1151 31.588158 285.224982 158.40657 2.19977319 0.085325 88 60 9814 RUF4 3_flank no 988 31.66233 307.055882 169.359106 2.228808552 -0.048015 88 61 8191 snoRNA cluster 3; intergenic no 743 466 485 29.691787 301.051115 165.371451 2.218460537 -0.078751 88 62 16627 YFL039C intron no 408 281 300 31.74232 285.893201 158.8177605 2.200899068 0.086101 88 63 6466 snR45 3_flank no 372 34.827443 302.480705 168.654074 2.226996836 0.038545 88 64 4839 snR8 5_flank no 390 31.876947 290.275007 161.075977 2.207030774 0.062515 88 65 13005 MT_COX1 ai2 no 13084 4276 4297 29.96876 301.604983 165.7868715 2.219550136 -0.072439 88 66 16433 YER074W intron no 566 221 238 42.404384 301.318437 171.8614105 2.235178372 0.087082 88 67 10258 RUF7 5_flank no 700 38.465472 324.479668 181.47257 2.25881099 -0.129175 88 68 2696 Pro4 ProTGG_iii 3_flank no 302 34.438565 282.987465 158.713015 2.200612542 0.190041 88 69 16417 YER056C intron no 497 401 420 28.254369 318.7281 173.4912345 2.239277537 -0.235622 88 70 4745 snR4 3_flank no 386 32.239699 326.466155 179.352927 2.253708469 -0.182008 88 71 21813 copy of SH15493 no 433 78.165224 313.132231 195.6487275 2.291477028 0.17469 88 72 2327 Phe3 PheGAA_iii 5_flank no 291 39.813976 276.081333 157.9476545 2.198513181 0.319638 88 73 6956 snR58 3_flank no 296 35.448387 306.049987 170.749187 2.232358645 0.016871 88 74 4224 telomerase RNA telomerase yes 1501 156 172 47.166324 338.82442 192.995372 2.285546895 -0.208395 88 75 16462 YER093C exon/intron no 175 41 60 29.135365 286.763158 157.9492615 2.1985176 -0.03091 88 76 12200 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7886 7904 33.107815 304.864925 168.98637 2.227851677 -0.001825 88 77 21357 YPR187W spliced yes 40 17 31 35.239578 286.000552 160.620065 2.205799797 0.181869 88 78 7937 snoRNA cluster1 3_flank no 1574 1481 1502 29.472429 322.231112 175.8517705 2.245146745 -0.211673 88 79 21481 copy of SH1654 no 315 29.693438 303.899123 166.7962805 2.222186362 -0.096029 88 80 802 Glu1 GluCTC tRNA yes 272 26 40 42.087762 285.756025 163.9218935 2.214636962 0.234127 88 81 9804 RUF4 3_flank no 988 34.101971 336.92329 185.5126305 2.268373484 -0.245317 88 82 6804 snR52 5_flank no 292 35.213123 309.454385 172.333754 2.236370348 -0.013224 88 83 21138 YNL162W spliced yes 40 1 20 30.143684 335.969479 183.0565815 2.262585348 -0.280754 88 84 2338 Phe3 PheGAA_iii tRNA yes 291 16 28 59.06118 298.469825 178.7655025 2.252283714 0.185804 88 85 10552 RUF8 RUF8 yes 1151 686 703 30.282794 271.478141 150.8804675 2.178633021 0.102047 88 86 7909 snoRNA cluster1 intergenic no 1574 1341 1359 30.424059 299.529172 164.9766155 2.21742239 -0.043979 88 87 19669 SIR1 2.4 SIR1 2.4 yes 401 101 118 36.830433 302.849504 169.8399685 2.230039901 0.058687 88 88 1054 Gly3 GlyGCC tRNA yes 271 6 24 39.091856 321.382548 180.237202 2.255844437 -0.100903 88 89 15131 MT_Phe tRNA yes 265 151 168 29.734739 295.267252 162.5009955 2.210856026 -0.041524 88 90 3704 Val3 ValCAC tRNA yes 273 1 18 807.005222 854.478915 830.7420685 2.919466204 0.464519 88 91 20878 YLR185W spliced yes 40 21 37 32.509468 301.085725 166.7975965 2.222189788 0.015708 88 92 11837 "rRNA(18S,5.8S,25S)" 25S yes 7956 6071 6088 36.210202 282.969202 159.589702 2.203004864 0.219453 88 93 13994 MT_COB intronic no 7308 4096 4120 31.658576 307.241732 169.450154 2.229041968 -0.049253 88 94 1227 Ile1 IleAAT 3_flank no 274 29.200588 311.517749 170.3591685 2.231365512 -0.159094 88 95 13698 MT_Glu (and 5_flank processing site for COB) 5_flank no 368 1 25 28.780477 321.789663 175.28507 2.243744926 -0.233958 88 96 19729 Negative Control no 60 NA #VALUE! 34.195408 285.115049 159.6552285 2.203183146 0.168851 88 97 21142 YNL162W spliced yes 40 17 34 33.797428 280.904581 157.3510045 2.19686952 0.184019 88 98 9550 RUF3 RUF3 yes 631 136 153 31.551004 291.091272 161.321138 2.207691277 0.046613 88 99 21613 copy of SH7094 no 455 34.054329 348.192514 191.1234215 2.281313912 -0.337371 88 100 6605 snR47 3_flank no 299 29.103657 318.52652 173.8150885 2.240087474 -0.203531 88 101 11800 "rRNA(18S,5.8S,25S)" 25S yes 7956 5886 5904 11377.94427 6255.543572 8816.743921 3.945308227 0.538979 88 102 14287 MT_VAR1 VAR1 yes 1467 511 539 30.480224 341.561561 186.0208925 2.269561724 -0.316953 88 103 4364 telomerase RNA telomerase yes 1501 856 871 72.92766 356.518804 214.723232 2.331879036 -0.170332 88 104 12940 MT_COX1 ai2 no 13084 3301 3318 30.147835 267.105781 148.626808 2.172097151 0.116728 89 2 19726 Negative Control no 60 NA #VALUE! 47.173688 332.592112 189.8829 2.278485856 -0.159349 89 3 18205 YML024W intron no 498 401 422 28.499414 305.587347 167.0433805 2.22282927 -0.149863 89 4 9226 snR6 / U6 RNA U6 yes 312 1 15 30.178594 312.907293 171.5429435 2.234372858 -0.132888 89 5 36 Ala1 AlaAGC 3_flank no 273 37.251509 268.415487 152.833498 2.184218553 0.361684 89 6 21461 copy of SH731 no 272 40.717574 350.606211 195.6618925 2.29150625 -0.334249 89 7 8415 snoRNA cluster 5 snR190 yes 586 241 258 37.094689 294.162974 165.6288315 2.219135938 0.133568 89 8 9427 RUF2 5_flank no 468 32.721962 331.172376 181.947169 2.259945303 -0.211231 89 9 19560 CBP1 2.2 CBP1 2.2 yes 401 301 319 36.595516 327.605957 182.1007365 2.260311702 -0.160517 89 10 4580 U3b (snR17b) U3b/3_flank no 662 36.053582 304.636546 170.345064 2.231329554 0.035321 89 11 21791 copy of SH14651 no 4639 40.163694 332.544585 186.3541395 2.270339044 -0.191124 89 12 10506 RUF8 RUF8 yes 1151 456 475 29.348974 297.262179 163.3055765 2.213001015 -0.067558 89 13 1596 Leu4 LeuCAA_iv 3_flank no 314 33.382165 284.705461 159.043813 2.201516779 0.146364 89 14 16002 YDL137W intron no 432 121 136 62.392237 367.481834 214.9370355 2.332311255 -0.317059 89 15 6034 snR37 snR37 yes 586 86 102 49.449768 396.421846 222.935807 2.348179829 -0.597729 89 16 278 Arg4 ArgCCT 5_flank/tRNA no 272 30.557377 297.689934 164.1236555 2.215171181 -0.028073 89 17 3959 RNase MRP RNaseMRP yes 540 211 227 38.951074 281.117827 160.0344505 2.204213483 0.265888 89 18 21607 copy of SH6883 no 288 29.54847 299.518666 164.533568 2.216254516 -0.074407 89 19 4260 telomerase RNA telomerase yes 1501 336 354 32.036734 299.149613 165.5931735 2.219042429 0.012289 89 20 14529 MT_21S 21S_rRNA3 yes 4639 2146 2165 28.281792 294.203201 161.2424965 2.207479514 -0.111219 89 21 14341 MT_VAR1 VAR1 yes 1467 1321 1345 28.465204 314.684408 171.574806 2.234453517 -0.20435 89 22 15819 YDL064W 5_exon no 210 21 37 34.765661 275.091886 154.9287735 2.190132083 0.252012 89 23 16729 YGL076C 5_exon no 559 1 20 36.846384 298.995164 167.920774 2.225104427 0.090521 89 24 20107 YDL064W spliced yes 40 1 13 61.970605 327.903558 194.9370815 2.28989446 -0.037371 89 25 11657 "rRNA(18S,5.8S,25S)" 25S yes 7956 5171 5186 180.297104 564.596097 372.4466005 2.571064015 -0.473655 89 26 16283 YDR447C intron no 414 341 363 34.967324 305.629904 170.298614 2.231211113 0.014608 89 27 14761 MT_ORF11; Leu; Gln ORF11 yes 716 301 329 30.979156 307.538735 169.2589455 2.228551631 -0.073685 89 28 20206 YDR059C spliced yes 40 5 22 72.939415 393.468971 233.204193 2.367736355 -0.402906 89 29 6775 snR50 snR50 yes 290 51 70 29.24937 296.499787 162.8745785 2.211853305 -0.069304 89 30 1396 Leu1 LeuCAA_i tRNA-intron no 315 i13 i25 31.47599 284.022776 157.749383 2.197967669 0.089387 89 31 520 Cys1 CysGCA 5_flank no 272 33.602018 311.556193 172.5791055 2.236988214 -0.049344 89 32 7938 snoRNA cluster1 3_flank no 1574 1486 1506 31.350929 304.547642 167.9492855 2.225178161 -0.043234 89 33 4283 telomerase RNA telomerase yes 1501 451 465 31.147226 277.00749 154.077358 2.187738823 0.118929 89 34 10389 RUF7 3_flank no 700 39.282816 313.467802 176.375309 2.246437788 -0.030786 89 35 5393 snR31 snR31 yes 425 31 46 41.021599 288.955639 164.988619 2.217453987 0.200672 89 36 1544 Leu3 LeuCAA_iii 3_flank no 314 38.600041 276.549367 157.574704 2.1974865 0.302631 89 37 3714 Val3 ValCAC tRNA yes 273 51 65 36.235238 301.123788 168.679513 2.227062338 0.066064 89 38 12768 MT_COX1 ai1 no 13084 721 745 27.847545 356.627071 192.237308 2.283837676 -0.461026 89 39 9705 RUF4 RUF4 yes 988 301 313 44.801324 292.262399 168.5318615 2.226682018 0.178616 89 40 7275 snR65 3_flank no 300 33.478493 273.855467 153.66698 2.186580556 0.220911 89 41 19532 CBP1 1.2 CBP1 1.2 yes 401 141 158 33.312823 309.685553 171.499188 2.234262068 -0.03804 89 42 3995 RNase MRP 3_flank no 540 29.229508 283.907583 156.5685455 2.194704517 -0.012571 89 43 6000 snR37 5_flank no 586 45.083795 294.118275 169.601035 2.229428498 0.162148 89 44 11153 "rRNA(18S,5.8S,25S)" 18S yes 7956 2651 2668 329.76838 465.182116 397.475248 2.599310089 0.483977 89 45 5903 snR36 5_flank no 555 29.185632 290.109416 159.647524 2.203162187 -0.04368 89 46 7243 snR65 5_flank/snR65 no 300 29.202824 281.49134 155.347082 2.1913031 -0.002608 89 47 1769 Leu7 LeuTAA 3_flank no 284 118.176252 368.87959 243.527921 2.386548761 0.046844 89 48 12953 MT_COX1 ai2 no 13084 3496 3513 31.158103 335.736405 183.447254 2.263511215 -0.265334 89 49 16813 YGL178W exon/intron no 740 41 60 31.106913 304.021792 167.5643525 2.224181633 -0.048211 89 50 7846 snoRNA cluster1 snR74 yes 1574 1026 1042 40.941998 282.501014 161.721506 2.208767777 0.263616 89 51 18923 YOL121C intron no 490 121 135 62.750528 290.388931 176.5697295 2.246916252 0.274837 89 52 8923 snR17a / U3a 5_flank no 690 42.834946 267.713536 155.274241 2.191099415 0.417966 89 53 21792 copy of SH14652 no 4639 34.939761 301.835979 168.38787 2.226310803 0.045151 89 54 11043 "rRNA(18S,5.8S,25S)" 18S yes 7956 2101 2118 8911.015764 8137.731008 8524.373386 3.930662464 -0.197268 89 55 3883 RNaseP 3_flank no 569 32.087327 307.884372 169.9858495 2.23041277 -0.039144 89 56 326 Arg5 ArgTCT 5_flank no 272 31.173123 279.253824 155.2134735 2.190929418 0.109466 89 57 9032 snR17a / U3a U3a yes 690 446 458 123.33812 370.761322 247.049721 2.392784368 0.067136 89 58 7058 snR62 snR62 yes 300 81 98 29.351138 292.874752 161.112945 2.207130436 -0.047527 89 59 488 Asp2 AspGTC_ii tRNA yes 272 1 18 207.66507 411.101006 309.383038 2.4904965 0.282282 89 60 18814 YNL302C intron no 651 101 117 35.522345 302.134473 168.828409 2.227445528 0.049556 89 61 17275 YHR141C 5_exon no 541 21 41 39.639053 303.741852 171.6904525 2.234746145 0.058103 89 62 11930 "rRNA(18S,5.8S,25S)" 25S yes 7956 6536 6551 39.745099 307.454654 173.5998765 2.239549412 0.024401 89 63 12254 5S rRNA NTS2 no 1420 226 243 33.802608 282.848502 158.325555 2.199551019 0.171482 89 64 7244 snR65 5_flank/snR65 no 300 31.926073 334.385354 183.1557135 2.262820471 -0.245288 89 65 21501 copy of SH2551 no 303 58.807442 315.490034 187.148738 2.272186903 0.041511 89 66 8855 LSR1 / U2 RNA U2 yes 1375 916 931 695.860078 729.593556 712.726817 2.8529231 0.550449 89 67 8692 LSR1 / U2 RNA U2 yes 1375 101 119 36.644355 302.260638 169.4524965 2.229047972 0.0614 89 68 11852 "rRNA(18S,5.8S,25S)" 25S yes 7956 6146 6162 36.792267 296.595234 166.6937505 2.221919318 0.109829 89 69 15401 YBL050W intron no 216 121 140 30.59234 290.242038 160.417189 2.205250902 0.019772 89 70 7699 snoRNA cluster1 intergenic no 1574 291 313 30.508374 293.658211 162.0832925 2.20973825 -0.004642 89 71 21776 copy of SH14040 no 7308 30.318988 327.462474 178.890731 2.252587839 -0.214972 89 72 20123 YDL079C spliced yes 40 13 30 32.098896 304.60858 168.353738 2.226222764 -0.018982 89 73 20320 YER044C-A spliced yes 40 21 40 29.78227 277.223169 153.5027195 2.186116074 0.048266 89 74 3458 Trp1 TrpCCA 3_flank no 306 41.603777 340.184722 190.8942495 2.280792846 -0.248413 89 75 6480 snR45 3_flank no 372 27.403266 276.82795 152.115608 2.182173778 -0.082467 89 76 2564 Pro2 ProTGG_i intron/tRNA no 303 i20 41 86.3862 356.764249 221.5752245 2.345521198 -0.080735 89 77 8582 snR19 / U1 RNA U1 yes 868 406 418 130.860951 363.559077 247.210014 2.393066059 0.152837 89 78 5244 snR30 snR30 yes 801 71 87 33.58507 273.436009 153.5105395 2.186138198 0.227052 89 79 4365 telomerase RNA telomerase yes 1501 861 879 37.827476 326.502818 182.165147 2.260465289 -0.14807 89 80 14943 MT_Met 5_flank no 276 16 40 27.869994 306.065836 166.967915 2.222633024 -0.186647 89 81 9437 RUF2 RUF2 yes 468 26 44 29.998766 290.094849 160.0468075 2.204247016 -0.000916 89 82 19241 YPL090C intron no 494 381 402 28.011533 311.209809 169.610671 2.229453172 -0.20097 89 83 2114 Met1 MetCAT_i 5_flank no 273 54.683443 297.798295 176.240869 2.246106626 0.168781 89 84 8575 snR19 / U1 RNA U1 yes 868 371 387 44.448432 291.695102 168.071767 2.225494766 0.182819 89 85 19231 YPL090C intron no 494 181 197 80.710963 343.542129 212.126546 2.326595021 -0.029991 89 86 16026 YDL189W 3_exon no 199 181 196 63.484201 296.371493 179.927847 2.255098383 0.226887 89 87 14217 MT_ATP9 ATP9 yes 431 151 167 59.672397 325.198792 192.4355945 2.284285406 -0.029915 89 88 16917 YGL251C intron no 252 101 120 32.754862 295.097118 163.92599 2.214647815 0.06055 89 89 6493 snR46 5_flank no 397 41.231339 321.355457 181.293398 2.258381989 -0.093507 89 90 4067 SRP SRP yes 875 226 245 28.652213 285.097823 156.875018 2.195553789 -0.049136 89 91 15432 YBL072C intron no 408 201 218 30.571044 336.062844 183.316944 2.263202609 -0.275612 89 92 5613 snR34 5_flank/snR34 no 750 36.467297 291.249201 163.858249 2.21446831 0.151107 89 93 17441 YIL133C intron no 390 301 318 40.127161 288.965549 164.546355 2.216288266 0.198564 89 94 13320 MT_COX1 ai5a no 13084 9001 9022 33.588326 327.516002 180.552164 2.256602698 -0.172974 89 95 1631 Leu5 LeuCAA_v tRNA yes 315 20:B 34 33.17459 299.643818 166.409204 2.221177343 0.0417 89 96 5619 snR34 snR34 yes 750 16 32 36.714925 261.53271 149.1238175 2.173547013 0.402041 89 97 14859 MT_Ser2; Arg2 tRNASer yes 360 151 170 30.480763 289.127586 159.8041745 2.20358812 0.023039 89 98 19991 YBL092W spliced yes 40 21 35 66.910772 280.582019 173.7463955 2.239915804 0.384077 89 99 7274 snR65 3_flank no 300 31.740307 308.637309 170.188808 2.230930997 -0.054904 89 100 3120 Ser4 SerGCT tRNA yes 301 6 18 2287.104653 1064.720554 1675.912604 3.224251367 1.436454 89 101 17701 YKL081W 5_exon no 426 21 37 34.876807 315.993778 175.4352925 2.244116965 -0.068878 89 102 11926 "rRNA(18S,5.8S,25S)" 25S yes 7956 6516 6529 63.702156 335.155705 199.4289305 2.29978816 -0.081267 89 103 14974 MT_COX 2; ORF1 COX2 no 2427 211 232 30.674215 367.220388 198.9473015 2.298738053 -0.495579 89 104 2888 Pro8 ProTGG_vii 5_flank no 305 30.511398 274.775765 152.6435815 2.183678547 0.097655 90 2 1254 Ile2 IleTAT_i 5_flank no 333 28.520785 356.041656 192.2812205 2.28393687 -0.447074 90 3 595 Gln1 GlnCTG tRNA yes 272 16 32 30.293442 278.653518 154.47348 2.188853931 0.067855 90 4 19249 YPL129W intron no 205 61 78 41.098692 294.258366 167.678529 2.224477455 0.150033 90 5 13563 MT_COX1 exon6 yes 13084 12646 12663 30.04273 306.221949 168.1323395 2.225651256 -0.097836 90 6 21456 copy of SH552 no 272 40.728183 316.296705 178.512444 2.251668496 -0.051732 90 7 3443 Trp1 TrpCCA tRNA yes 306 i10 i26 35.282717 319.360922 177.3218195 2.248762179 -0.092633 90 8 4571 U3b (snR17b) U3b yes 662 411 427 64.313618 412.388107 238.3508625 2.377216728 -0.580708 90 9 12553 MT_15S 5_flank no 1848 46 74 30.168583 325.70392 177.9362515 2.250264437 -0.207032 90 10 19966 YBL059W spliced yes 40 21 38 37.737287 296.943252 167.3402695 2.223600464 0.116864 90 11 1011 Gly2 GlyCCC_ii tRNA yes 272 46 58 32.579848 276.539991 154.5599195 2.189096883 0.174538 90 12 11176 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2766 2782 240.505609 579.123726 409.8146675 2.612587498 -0.246407 90 13 283 Arg4 ArgCCT tRNA yes 272 11 25 27.537001 290.317597 158.927299 2.201198503 -0.134981 90 14 8079 snoRNA cluster 2 snR61/3_flank no 739 631 650 28.70589 269.395553 149.0507215 2.173334083 0.02921 90 15 6458 snR45 snR45 yes 372 136 150 74.166947 335.816837 204.991892 2.311736684 -0.018633 90 16 901 Glu3 GluTTC_ii tRNA yes 272 16 30 336.85533 631.105853 483.9805915 2.684827946 -0.043037 90 17 18897 YOL120C intron no 547 141 158 34.839497 296.474732 165.6571145 2.219210092 0.088252 90 18 10840 "rRNA(18S,5.8S,25S)" 18S yes 7956 1086 1106 160.82284 432.532357 296.6775985 2.472284755 -0.044853 90 19 9534 RUF3 RUF3 yes 631 56 77 30.052264 303.684722 166.868493 2.222374344 -0.082186 90 20 17372 YIL052C intron no 572 341 355 30.496633 293.725385 162.111009 2.209812509 -0.005465 90 21 8643 snR19 / U1 RNA 3_flank no 868 28.698205 293.217131 160.957668 2.206711671 -0.084037 90 22 15567 YBR084C intron no 606 101 121 30.925484 305.002133 167.9638085 2.225215713 -0.060247 90 23 9269 RUF1 5_flank no 750 41.498225 316.55561 179.0269175 2.252918334 -0.051309 90 24 1688 Leu6 LeuGAG tRNA yes 282 6 18 358.023449 627.603453 492.813451 2.692682553 0.035441 90 25 3409 Thr4 ThrTGT_ii 3_flank no 272 35.214764 306.186058 170.700411 2.232234567 0.013035 90 26 6904 snR56 3_flank no 288 33.201511 305.305951 169.253731 2.228538251 -0.004227 90 27 4936 snR9 snR9 yes 387 86 105 35.466797 320.739453 178.103125 2.25067154 -0.104192 90 28 1299 Ile2 IleTAT_i 3_flank no 333 33.5029 282.372223 157.9375615 2.198485428 0.165285 90 29 2148 Met1 MetCAT_i 3_flank no 273 31.487109 277.138021 154.312565 2.18840129 0.134936 90 30 20684 YIL111W spliced yes 40 17 33 32.591465 305.021181 168.806323 2.22738871 -0.0096 90 31 9809 RUF4 3_flank no 988 29.32882 295.260771 162.2947955 2.210304593 -0.059513 90 32 2104 Met1 MetCAT_i 5_flank no 273 33.422897 289.934583 161.67874 2.208652916 0.114128 90 33 12593 MT_15S 15S yes 1848 646 670 31.07049 325.245904 178.158197 2.250805809 -0.188048 90 34 16642 YFR024C 3_exon no 218 181 198 30.80304 284.583338 157.693189 2.197812936 0.06319 90 35 21472 copy of SH1242 no 333 38.820309 293.086329 165.953319 2.219985943 0.155977 90 36 15804 YDL061C intron no 509 221 237 38.482271 307.788889 173.13558 2.238386326 0.018417 90 37 10859 "rRNA(18S,5.8S,25S)" 18S yes 7956 1181 1199 34.079227 263.309455 148.694341 2.17229444 0.311786 90 38 6815 snR52 5_flank no 292 39.879331 403.334758 221.6070445 2.345583562 -0.709688 90 39 16001 YDL137W intron no 432 101 118 32.538639 293.697667 163.118153 2.212502295 0.062386 90 40 2468 Phe5 PheGAA_v 3_flank no 291 37.30021 337.69973 187.49997 2.273001203 -0.243564 90 41 13149 MT_COX1 intronic no 13084 6436 6456 29.163115 325.974213 177.568664 2.249366327 -0.243954 90 42 21815 copy of SH15700 no 521 33.010256 309.703846 171.357051 2.233901979 -0.041964 90 43 19949 YBL050W spliced yes 40 5 22 52.803606 351.991692 202.397649 2.306205464 -0.273743 90 44 17007 YGR148C intron no 479 61 77 34.98601 300.363099 167.6745545 2.224467161 0.057788 90 45 14029 MT_COB exon4 yes 7308 4621 4640 31.111113 279.497352 155.3042325 2.191183292 0.105211 90 46 8917 LSR1 / U2 RNA 3_flank no 1375 57.149368 273.419896 165.284632 2.218232475 0.404921 90 47 17245 YHR097C 5_exon no 224 1 15 65.337889 315.988305 190.663097 2.280266643 0.075104 90 48 7378 snR68 snR68 yes 336 111 130 29.336531 332.590367 180.963449 2.257590865 -0.274759 90 49 14353 MT_ORF9; ORF10 5_flank no 578 61 89 29.343634 339.37788 184.360757 2.265668483 -0.316838 90 50 18660 YNL112W intron no 1102 381 400 31.311835 309.104016 170.2079255 2.230979779 -0.071879 90 51 21631 copy of SH7931 no 1574 43.23736 267.235612 155.236486 2.190993803 0.423812 90 52 8212 snoRNA cluster 3; snR51 yes 743 571 587 35.203879 281.677648 158.4407635 2.199866927 0.219089 90 53 2816 Pro6 ProTGG_v 3_flank no 302 29.20383 339.723344 184.463587 2.265910649 -0.32133 90 54 2235 Phe1 PheGAA_i intron/tRNA no 292 i14 48 100.475116 349.228637 224.8518765 2.351896516 0.059334 90 55 21135 YNL147W spliced yes 40 13 29 39.044946 324.033127 181.5390365 2.258970026 -0.123962 90 56 18366 YMR079W intron no 256 61 82 35.05304 293.408058 164.230549 2.215453945 0.116478 90 57 12234 5S rRNA NTS2 no 1420 126 142 29.120958 313.66538 171.393169 2.233993509 -0.174595 90 58 3817 RNaseP RNaseP yes 569 51 63 35.095887 287.434088 161.2649875 2.207540087 0.167821 90 59 8483 snR19 / U1 RNA 5_flank no 868 46.130842 318.796444 182.463643 2.261176342 -0.053007 90 60 1087 Gly4 GlyTCC 5_flank no 272 31.291472 342.861476 187.076474 2.272019176 -0.315464 90 61 8812 LSR1 / U2 RNA U2 yes 1375 701 713 1166.468474 1518.534934 1342.501704 3.127914846 -0.003172 90 62 15304 YAL001C intron no 190 61 77 36.574837 294.199281 165.387059 2.218501524 0.12742 90 63 6679 snR49 5_flank no 365 33.748026 282.118575 157.9333005 2.198473711 0.174552 90 64 21884 copy of SH18599 no 549 31.944156 350.351768 191.147962 2.281369672 -0.360485 90 65 21875 copy of SH18250 no 226 30.145688 285.269561 157.7076245 2.19785269 0.029011 90 66 945 Gly1 GlyCCC_i 5_flank no 272 32.450642 296.463503 164.4570725 2.216052555 0.042301 90 67 7462 snR71 5_flank no 290 54.612998 300.43234 177.522669 2.249253819 0.145603 90 68 7350 snR68 5_flank no 336 33.896461 294.744889 164.320675 2.21569221 0.091351 90 69 4771 snR5 snR5 yes 404 26 43 32.91108 295.740923 164.3260015 2.215706288 0.061506 90 70 13592 MT_ATP8/AAP1 5_flank no 347 16 44 28.670985 320.583385 174.627185 2.242111853 -0.231023 90 71 13378 MT_COX1 intronic no 13084 9871 9893 28.505406 312.893566 170.699486 2.232232213 -0.192369 90 72 3081 Ser3 SerCGA 3_flank no 301 30.317919 317.093911 173.705915 2.239814607 -0.152549 90 73 1237 Ile1 IleAAT 3_flank no 274 31.044118 266.774292 148.909205 2.172921545 0.163902 90 74 281 Arg4 ArgCCT tRNA yes 272 1 13 54.11054 306.632885 180.3717125 2.256168429 0.089978 90 75 2761 Pro5 ProTGG_iv 3_flank no 303 33.58001 295.509506 164.544758 2.216284051 0.081065 90 76 2811 Pro6 ProTGG_v 3_flank no 302 31.477624 300.331711 165.9046675 2.219858604 -0.013357 90 77 21449 copy of SH210 no 272 35.506332 298.271128 166.88873 2.22242701 0.081173 90 78 6144 snR39B snR39B yes 296 61 79 41.674574 317.717356 179.695965 2.254538325 -0.060753 90 79 8402 snoRNA cluster 5 snR190 yes 586 176 195 29.736717 308.223266 168.9799915 2.227835284 -0.120521 90 80 7775 snoRNA cluster1 intergenic no 1574 671 688 29.86953 277.476935 153.6732325 2.186598227 0.051593 90 81 9307 RUF1 RUF1 yes 750 111 129 29.963959 293.562883 161.763421 2.208880323 -0.022847 90 82 4772 snR5 snR5 yes 404 31 47 72.232804 325.325657 198.7792305 2.298371005 0.044833 90 83 7697 snoRNA cluster1 intergenic no 1574 281 298 36.15872 299.113549 167.6361345 2.224367638 0.081742 90 84 20982 YML056C spliced yes 40 21 36 36.200885 300.13112 168.1660025 2.225738201 0.073832 90 85 14570 MT_21S 21S_rRNA3 yes 4639 2761 2780 32.196563 301.800074 166.9983185 2.222712098 0.001245 90 86 8874 LSR1 / U2 RNA U2 yes 1375 1011 1028 40.586844 325.809525 183.1981845 2.262921165 -0.133508 90 87 5729 snR34 3_flank no 750 77.36993 316.639553 197.0047415 2.294476679 0.142994 90 88 8339 snoRNA cluster4 snR53 yes 638 481 498 28.552364 305.993041 167.2727025 2.223425074 -0.14959 90 89 8722 LSR1 / U2 RNA U2 yes 1375 251 268 30.733959 288.213754 159.4738565 2.202689497 0.037506 90 90 14155 MT_COB intronic no 7308 6511 6539 28.648583 329.098147 178.873365 2.252545677 -0.280103 90 91 611 Gln1 GlnCTG 3_flank no 272 28.537583 290.14902 159.3433015 2.202333811 -0.078751 90 92 13200 MT_COX1 exon4 yes 13084 7201 7220 28.335815 277.922158 153.1289865 2.185057408 -0.032445 90 93 20566 YHR010W spliced yes 40 5 21 32.164863 290.349649 161.257256 2.207519265 0.071431 90 94 7294 snR66 5_flank no 286 35.899663 335.153295 185.526479 2.268405902 -0.225909 90 95 17511 YJL136C intron no 560 181 195 75.020115 347.486678 211.2533965 2.3248037 -0.095013 90 96 8930 snR17a / U3a 5_flank no 690 33.196655 283.706782 158.4517185 2.199896954 0.147015 90 97 14773 MT_ORF11; Leu; Gln tRNALeu yes 716 481 497 36.806291 292.289781 164.548036 2.216292703 0.146124 90 98 6072 snR37 snR37 yes 586 276 292 30.586041 306.942243 168.764142 2.227280176 -0.083446 90 99 105 Arg1 ArgACG_i 5_flank no 273 28.343397 301.61526 164.9793285 2.217429532 -0.14097 90 100 2435 Phe5 PheGAA_v 5_flank no 291 31.867987 305.535524 168.7017555 2.227119602 -0.032115 90 101 9822 RUF5-1 5_flank no 975 33.455851 332.370714 182.9132825 2.262245244 -0.210973 90 102 11870 "rRNA(18S,5.8S,25S)" 25S yes 7956 6236 6253 315.594754 654.120563 484.8576585 2.68561426 -0.17921 90 103 18715 YNL130C intron no 541 381 398 28.253986 300.034835 164.1444105 2.215226099 -0.138884 90 104 21632 copy of SH7932 no 1574 36.527156 260.63427 148.580713 2.171962438 0.403023 91 2 4225 telomerase RNA telomerase yes 1501 161 177 45.237015 410.770259 228.003637 2.357941775 -0.719409 91 3 9756 RUF4 RUF4 yes 988 556 571 58.106263 329.017353 193.561808 2.28681967 -0.068924 91 4 13837 MT_COB bi2 no 7308 1741 1764 28.466632 309.859234 169.162933 2.228305206 -0.175848 91 5 9504 RUF3 5_flank no 631 39.239428 336.123531 187.6814795 2.273421418 -0.223803 91 6 10739 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 581 598 44.511797 470.309356 257.4105765 2.410626387 -1.06707 91 7 15400 YBL050W intron no 216 101 117 35.38808 307.607019 171.4975495 2.234257919 0.003625 91 8 20504 YGR027C spliced yes 40 1 17 41.740939 303.961867 172.851403 2.237672909 0.060877 91 9 19352 YPL249C intron no 337 181 195 35.585823 274.345168 154.9654955 2.190235009 0.281365 91 10 7067 snR62 3_flank no 300 32.200176 282.053702 157.126939 2.19625065 0.125949 91 11 15583 YBR084C intron no 606 421 438 28.801392 269.463966 149.132679 2.17357282 0.034033 91 12 12484 5S rRNA NTS1 no 1420 1376 1404 30.8763 299.16141 165.018855 2.217533569 -0.026309 91 13 30 Ala1 AlaAGC tRNA yes 273 46 58 34.827647 296.750137 165.788892 2.219555429 0.085817 91 14 6526 snR46 snR46 yes 397 121 137 38.863472 321.787593 180.3255325 2.256057223 -0.104957 91 15 518 Asp2 AspGTC_ii 3_flank no 272 43.076613 311.444927 177.26077 2.248612631 -0.001347 91 16 1943 Lys2 LysCTT_ii 5_flank no 273 32.134042 305.709932 168.921987 2.227686181 -0.024484 91 17 9782 RUF4 RUF4 yes 988 686 706 30.784997 324.774489 177.779743 2.249882274 -0.188286 91 18 10955 "rRNA(18S,5.8S,25S)" 18S yes 7956 1661 1676 5376.285574 13540.27733 9458.281453 3.975812233 -1.661672 91 19 3408 Thr4 ThrTGT_ii 3_flank no 272 34.158902 296.056354 165.107628 2.217767138 0.083573 91 20 2927 Pro8 ProTGG_vii 3_flank no 305 30.600301 303.525116 167.0627085 2.222879518 -0.062347 91 21 2767 Pro6 ProTGG_v 5_flank no 302 28.869022 338.398625 183.6338235 2.263952677 -0.323409 91 22 19177 YPL079W intron no 521 221 237 31.169725 279.009193 155.089459 2.190582281 0.110464 91 23 1375 Leu1 LeuCAA_i 5_flank no 315 31.241794 315.067218 173.154506 2.238433798 -0.109398 91 24 11398 "rRNA(18S,5.8S,25S)" 25S yes 7956 3876 3893 144.058444 433.305138 288.681791 2.460419391 -0.141278 91 25 5897 snR36 5_flank no 555 30.194134 291.322133 160.7581335 2.206172955 -0.000749 91 26 13806 MT_COB intronic/exon2 no 7308 1276 1293 31.2885 292.104992 161.696746 2.20870128 0.031488 91 27 7640 snR189 3_flank no 389 67.765458 338.653332 203.209395 2.307943783 -0.080948 91 28 6068 snR37 snR37 yes 586 256 275 31.429596 290.382579 160.9060875 2.206572475 0.047075 91 29 7837 snoRNA cluster1 snR74 yes 1574 981 998 37.882794 339.511158 188.696976 2.27576494 -0.256321 91 30 13510 MT_COX1 intronic no 13084 11851 11868 35.718128 297.881816 166.799972 2.222195973 0.086864 91 31 13429 MT_COX1 intronic no 13084 10636 10662 29.223146 310.884986 170.054066 2.23058702 -0.154544 91 32 8662 LSR1 / U2 RNA 5_flank no 1375 31.16597 274.199815 152.6828925 2.183790379 0.13343 91 33 216 Arg3 ArgCCG 5_flank no 272 30.932559 306.482654 168.7076065 2.227134664 -0.068924 91 34 4138 SRP SRP yes 875 581 597 57.856795 329.570404 193.7135995 2.287160111 -0.074707 91 35 7372 snR68 snR68 yes 336 81 103 32.47828 290.013781 161.2460305 2.207489032 0.083688 91 36 14994 MT_COX 2; ORF1 COX2 no 2427 511 528 30.162684 287.920961 159.0418225 2.201511344 0.017567 91 37 13093 MT_COX1 ai3 no 13084 5596 5617 29.913958 282.035462 155.97471 2.193054187 0.032204 91 38 17611 YJR021C 5_exon no 180 1 19 31.678063 328.029586 179.8538245 2.254919677 -0.201091 91 39 6628 snR48 5_flank no 313 33.416152 280.534733 156.9754425 2.195831716 0.174598 91 40 9545 RUF3 RUF3 yes 631 111 128 85.934282 339.190266 212.562274 2.327486188 0.033785 91 41 13513 MT_COX1 intronic no 13084 11896 11924 29.025835 298.317531 163.671683 2.213973548 -0.089363 91 42 9167 snR7 U5 RNA U5 yes 415 106 118 42.722266 279.517903 161.1200845 2.207149681 0.297164 91 43 18966 YOR096W 5_exon no 501 1 17 35.805534 337.7831 186.794317 2.271363659 -0.247988 91 44 9274 RUF1 5_flank no 750 36.884756 310.664425 173.7745905 2.239986274 -0.011437 91 45 5171 snR13 snR13 yes 324 11 32 29.129435 296.949613 163.039524 2.212292899 -0.077707 91 46 9118 snR14 / U4 RNA 3_flank no 360 29.284647 282.286852 155.7857495 2.192527728 -0.002019 91 47 7638 snR189 3_flank no 389 35.427085 277.835648 156.6313665 2.194878737 0.253419 91 48 14855 MT_Ser2; Arg2 5_flank/tRNASer no 360 91 113 27.534543 323.966557 175.75055 2.244896693 -0.292584 91 49 3494 Tyr1 TyrGTA_i tRNA yes 289 11 25 39.654593 320.562314 180.1084535 2.255534097 -0.092282 91 50 7359 snR68 snR68 yes 336 16 34 31.607698 272.677917 152.1428075 2.182251426 0.162709 91 51 19826 Negative Control no 60 NA #VALUE! 35.583492 254.389251 144.9863715 2.161327181 0.420345 91 52 671 Gln2 GlnTTG_i 3_flank no 272 49.575714 283.762394 166.669054 2.22185497 0.273996 91 53 1588 Leu4 LeuCAA_iv tRNA/3_flank no 314 31.372161 326.347383 178.859772 2.252512673 -0.192403 91 54 18585 YNL050C exon/intron no 191 41 60 31.239859 306.852026 169.0459425 2.228004751 -0.060819 91 55 14776 MT_ORF11; Leu; Gln intergenic/tRNAGln no 716 526 547 29.126774 309.625016 169.375895 2.228851603 -0.150517 91 56 10025 RUF6 5_flank no 1251 48.792205 283.803965 166.298085 2.220887248 0.271325 91 57 4417 telomerase RNA telomerase yes 1501 1121 1137 36.815792 302.281222 169.548507 2.22929397 0.063165 91 58 21730 copy of SH12130 no 7956 30.89393 274.535921 152.7149255 2.183881485 0.118177 91 59 1161 His1 HisGTG tRNA yes 272 25 39 36.851211 303.463946 170.1575785 2.230851297 0.053912 91 60 8005 snoRNA cluster 2 intergenic no 739 261 283 31.044725 296.161741 163.603233 2.213791882 -0.002074 91 61 4753 snR5 5_flank no 404 29.216172 304.353142 166.784657 2.222156096 -0.115698 91 62 15949 YDL125C intron/exon no 211 161 175 35.394402 271.512511 153.4534565 2.185976675 0.294842 91 63 13295 MT_COX1 ai5a no 13084 8626 8654 27.620288 342.098494 184.859391 2.266841518 -0.389604 91 64 20364 YER131W spliced yes 40 21 37 50.263597 330.139828 190.2017125 2.279214423 -0.123117 91 65 21862 copy of SH18012 no 530 29.154894 300.081684 164.618289 2.216478083 -0.091867 91 66 9303 RUF1 RUF1 yes 750 91 108 34.601046 307.410142 171.005594 2.233010317 -0.004105 91 67 7399 snR68 3_flank no 336 30.712622 311.681131 171.1968765 2.233495837 -0.107342 91 68 5676 snR34 snR34 yes 750 301 320 30.885404 315.873282 173.379343 2.238997353 -0.126083 91 69 15784 YDL029W exon/intron no 223 41 58 30.949662 300.059797 165.5047295 2.218810409 -0.029352 91 70 11588 "rRNA(18S,5.8S,25S)" 25S yes 7956 4826 4839 105.269621 335.633828 220.4517245 2.3433135 0.178354 91 71 2157 Met2 MetCAT_ii 5_flank no 272 30.71248 299.035699 164.8740895 2.21715241 -0.03109 91 72 14617 MT_21S Sce1 no 4639 3466 3488 30.447699 315.430106 172.9389025 2.237892699 -0.138403 91 73 11964 "rRNA(18S,5.8S,25S)" 25S yes 7956 6706 6724 30.142728 297.786383 163.9645555 2.214749976 -0.042936 91 74 13239 MT_COX1 ai4 no 13084 7786 7807 31.878638 301.892198 166.885418 2.222418391 -0.009679 91 75 20731 YJL189W spliced yes 40 5 21 64.040687 383.662772 223.8517295 2.349960454 -0.409579 91 76 21366 Leu1_5 spliced yes 40 1 13 29.503951 254.632694 142.0683225 2.152497252 0.141488 91 77 15515 YBR048W intron no 611 261 281 63.726229 343.718269 203.722249 2.309038462 -0.143323 91 78 5524 snR33 5_flank no 383 45.654792 305.549935 175.6023635 2.244530357 0.059348 91 79 6579 snR47 snR47 yes 299 1 22 29.682926 282.66073 156.171828 2.193602694 0.017208 91 80 13264 MT_COX1 ai4 no 13084 8161 8181 31.838076 305.942158 168.890117 2.227604237 -0.035544 91 81 4728 snR4 snR4/3_flank no 386 38.055189 309.992667 174.023928 2.240608967 -0.002537 91 82 6637 snR48 snR48 yes 313 11 30 36.104523 303.574816 169.8396695 2.230039136 0.044533 91 83 3454 Trp1 TrpCCA tRNA/3_flank no 306 34.116755 298.272051 166.194403 2.220616394 0.064635 91 84 6475 snR45 3_flank no 372 32.127142 303.111791 167.6194665 2.224324454 -0.008994 91 85 18503 YMR194W intron no 563 421 436 44.537135 281.229859 162.883497 2.211877085 0.283902 91 86 12476 5S rRNA 5S yes 1420 1336 1351 3107.772041 2389.160606 2748.466324 3.43909042 0.546942 91 87 13539 MT_COX1 intronic no 13084 12286 12303 34.575838 292.555886 163.565862 2.213692667 0.117991 91 88 21824 copy of SH16119 no 639 36.819763 277.030542 156.9251525 2.195692559 0.278783 91 89 18466 YMR143W intron no 644 321 340 32.752671 325.128122 178.9403965 2.252708395 -0.165322 91 90 2054 Lys4 LysTTT_ii 5_flank no 296 30.665668 276.580805 153.6232365 2.18645691 0.096772 91 91 1910 Lys1 LysCTT_i tRNA yes 272 6 18 38.876857 267.797687 153.337272 2.185647733 0.385062 91 92 14648 MT_21S intronic no 4639 3931 3952 30.387763 369.857348 200.1225555 2.30129604 -0.516428 91 93 11224 "rRNA(18S,5.8S,25S)" ITS1 no 7956 3006 3027 38.374524 314.773626 176.574075 2.24692694 -0.044538 91 94 12451 5S rRNA NTS2 no 1420 1211 1225 127.106024 333.166771 230.1363975 2.36198531 0.320615 91 95 6218 snR40 3_flank no 297 35.762641 302.986004 169.3743225 2.228847571 0.045392 91 96 14701 MT_Thr2 5_flank/tRNA no 276 91 113 31.473638 293.867197 162.6704175 2.211308581 0.026574 91 97 2601 Pro3 ProTGG_ii 5_flank no 303 31.212807 280.198972 155.7058895 2.19230504 0.105576 91 98 19836 Negative Control no 60 NA #VALUE! 42.778799 286.853737 164.816268 2.217000076 0.224901 91 99 5700 snR34 snR34 yes 750 421 438 30.633772 308.524799 169.5792855 2.229372801 -0.091287 91 100 2046 Lys3 LysTTT_i 3_flank no 296 32.26094 318.483306 175.372123 2.243960559 -0.120554 91 101 14869 MT_Ser2; Arg2 3_flank no 360 301 329 30.031649 294.661878 162.3467635 2.210443635 -0.02737 91 102 20525 YGR118W spliced yes 40 9 25 45.060701 341.285238 193.1729695 2.285946356 -0.238715 91 103 13355 MT_COX1 intronic no 13084 9526 9548 29.535129 349.32594 189.4305345 2.277449985 -0.385544 91 104 21437 TH204 - control oligo; WTP_219 no 31.242154 286.052787 158.6474705 2.200433152 0.068488 92 2 15180 MT_COX3 cox3 no 1010 121 138 74.0398 413.038513 243.5391565 2.386568798 -0.507964 92 3 198 Arg2 ArgACG_ii 3_flank no 273 26.896482 261.615792 144.256137 2.159134298 -0.052452 92 4 4270 telomerase RNA telomerase yes 1501 386 405 30.523609 270.670126 150.5968675 2.177815938 0.118323 92 5 5499 snR32 snR32 yes 388 156 173 158.783876 438.61564 298.699758 2.475234871 -0.084128 92 6 17119 YHR010W intron no 661 101 118 30.280755 307.829883 169.055319 2.22802884 -0.099238 92 7 190 Arg2 ArgACG_ii tRNA/3_flank no 273 50.160427 365.665593 207.91301 2.317881666 -0.388294 92 8 1089 Gly4 GlyTCC 5_flank no 272 51.934866 386.127403 219.0311345 2.340505853 -0.5137 92 9 11985 "rRNA(18S,5.8S,25S)" 25S yes 7956 6811 6829 35.669256 304.955292 170.312274 2.231245948 0.028299 92 10 2877 Pro8 ProTGG_vii 5_flank no 305 41.322877 298.949941 170.136409 2.230797262 0.106333 92 11 11796 "rRNA(18S,5.8S,25S)" 25S yes 7956 5866 5884 1005.247673 5304.508954 3154.878314 3.498982613 -2.174667 92 12 16368 YEL012W 3_exon no 223 201 219 28.935993 295.985164 162.4605785 2.210747995 -0.083728 92 13 1371 Leu1 LeuCAA_i 5_flank no 315 27.271829 280.560107 153.915968 2.187283678 -0.105916 92 14 18244 YML026C 3_exon no 501 481 500 27.476385 305.165803 166.321094 2.220947333 -0.204826 92 15 16879 YGL189C 5_exon no 269 1 17 37.203631 317.4977 177.3506655 2.248832822 -0.071443 92 16 18618 YNL069C 3_exon no 549 521 533 49.317229 328.890484 189.1038565 2.276700386 -0.11889 92 17 20910 YLR333C spliced yes 40 5 24 33.618116 319.433603 176.5258595 2.246808335 -0.110855 92 18 4012 SRP 5_flank no 875 31.385609 271.819093 151.602351 2.180705936 0.155954 92 19 7184 snR64 5_flank/snR64 no 301 55.687656 349.274013 202.4808345 2.306383922 -0.235166 92 20 13416 MT_COX1 intronic no 13084 10441 10467 28.555274 293.462359 161.0088165 2.206849658 -0.092909 92 21 14451 MT_21S 21S_rRNA3 yes 4639 976 993 1513.611368 1801.928204 1657.769786 3.21952422 0.066735 92 22 1275 Ile2 IleTAT_i intron yes 333 i34 i49 41.940123 308.64253 175.2913265 2.243760428 0.019638 92 23 3742 Val4 ValTAC 5_flank no 274 29.265996 294.495756 161.880876 2.209195546 -0.059391 92 24 25 Ala1 AlaAGC tRNA yes 273 21 33 35.665077 285.48202 160.5735485 2.205674005 0.191324 92 25 13918 MT_COB bi3 no 7308 2956 2984 29.249889 309.685036 169.4674625 2.229086327 -0.146469 92 26 13674 MT_ATP6 3_flank no 980 916 937 31.361022 314.360515 172.8607685 2.237696439 -0.101287 92 27 13396 MT_COX1 intronic no 13084 10141 10169 31.364703 336.869395 184.117049 2.265094005 -0.270924 92 28 10914 "rRNA(18S,5.8S,25S)" 18S yes 7956 1456 1469 39.898217 281.362047 160.630132 2.205827016 0.272546 92 29 9939 RUF5-1 RUF5-1 yes 975 501 517 35.613364 315.071667 175.3425155 2.243887233 -0.054 92 30 14441 MT_21S 21S_rRNA3 yes 4639 826 848 29.173214 301.881539 165.5273765 2.218869832 -0.102221 92 31 14831 MT_Lys; Arg1; Gly 3_flank no 682 646 674 31.167181 295.45789 163.3125355 2.213019521 0.006418 92 32 5914 snR36 snR36 yes 555 26 43 45.736514 344.118415 194.9274645 2.289873034 -0.256883 92 33 9723 RUF4 RUF4 yes 988 391 406 43.319458 290.989181 167.1543195 2.223117604 0.186054 92 34 20050 YBR191W spliced yes 40 17 33 42.995981 300.085929 171.540955 2.234367824 0.100298 92 35 7065 snR62 3_flank no 300 128.632381 411.288849 269.960615 2.431300409 -0.122623 92 36 15862 YDL079C intron no 392 161 182 36.204319 333.377353 184.790836 2.26668043 -0.210293 92 37 3795 RNaseP 5_flank no 569 33.89025 237.836241 135.8632455 2.133101985 0.453093 92 38 758 Gln4 GlnTTG_iii tRNA/3_flank no 272 31.597013 303.668422 167.6327175 2.224358785 -0.029746 92 39 21556 copy of SH4782 no 404 31.327453 328.918334 180.1228935 2.255568915 -0.212386 92 40 8378 snoRNA cluster 5 5_flank no 586 56 73 31.081859 294.55638 162.8191195 2.211705402 0.009182 92 41 14759 MT_ORF11; Leu; Gln ORF11 yes 716 271 283 72.541163 317.913552 195.2273575 2.290540676 0.103457 92 42 212 Arg3 ArgCCG 5_flank no 272 30.810656 270.780431 150.7955435 2.178388507 0.132324 92 43 17507 YJL136C intron no 560 101 115 54.502447 337.380978 195.9417125 2.292126899 -0.155247 92 44 19915 YAL003W spliced yes 40 17 33 36.875028 293.493188 165.184108 2.217968262 0.136743 92 45 14 Ala1 AlaAGC 5_flank no 273 31.154442 312.164918 171.65968 2.234668299 -0.095283 92 46 7453 snR69 3_flank no 301 31.382695 265.028195 148.205445 2.17086416 0.1895 92 47 10663 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 201 218 35.623654 299.829516 167.726585 2.224601905 0.069661 92 48 16740 YGL076C intron no 559 221 235 43.929966 314.971784 179.450875 2.25394558 -0.029441 92 49 6744 snR49 3_flank no 365 31.878834 317.511274 174.695054 2.242280609 -0.117933 92 50 12699 MT_ORF 8 ORF8 yes 491 151 172 31.90646 336.663623 184.2850415 2.265490085 -0.262323 92 51 6878 snR56 snR56 yes 288 21 38 77.788135 300.133785 188.96096 2.276372087 0.274664 92 52 1232 Ile1 IleAAT 3_flank no 274 29.71858 291.800086 160.759333 2.206176196 -0.023301 92 53 6501 snR46 5_flank/snR46 no 397 39.5951 312.419949 176.0075245 2.245531235 -0.020708 92 54 16457 YER074W intron/exon no 202 141 157 33.328205 289.371602 161.3499035 2.20776871 0.114744 92 55 15071 MT_COX 2; ORF1 ORF1exon1 yes 2427 1666 1693 27.154873 321.109481 174.132177 2.24087903 -0.290929 92 56 19439 YPR187W exon/intron no 176 41 53 185.835482 353.188014 269.511748 2.430577701 0.490619 92 57 20446 YGL103W spliced yes 40 9 21 54.3448 285.460329 169.9025645 2.230199934 0.278803 92 58 11553 "rRNA(18S,5.8S,25S)" 25S yes 7956 4651 4669 48.32914 294.448556 171.388848 2.23398256 0.16897 92 59 17660 YKL002W intron/exon no 168 101 122 28.767853 310.172509 169.470181 2.229093293 -0.166717 92 60 2727 Pro5 ProTGG_iv tRNA yes 303 16 33 37.697858 277.36954 157.533699 2.197373471 0.28552 92 61 8605 snR19 / U1 RNA U1 yes 868 521 536 68.743896 350.534632 209.639264 2.321472626 -0.158472 92 62 3263 Thr2 ThrCGT 5_flank no 272 29.255866 290.535815 159.8958405 2.203837166 -0.041901 92 63 7205 snR64 snR64/3_flank no 301 39.567287 279.933805 159.750546 2.203442351 0.282818 92 64 6860 snR56 5_flank no 288 31.86094 311.997568 171.929254 2.235349779 -0.074873 92 65 15698 YBR220C intron no 521 121 142 30.161967 281.913492 156.0377295 2.193229622 0.045608 92 66 5279 snR30 snR30 yes 801 246 262 34.61304 287.831027 161.2220335 2.207424395 0.158675 92 67 3357 Thr3 ThrTGT_i 3_flank no 272 30.733795 310.81068 170.7722375 2.232417269 -0.101474 92 68 18539 YMR230W intron no 510 161 178 31.952561 293.709117 162.830839 2.211736661 0.043335 92 69 5877 snR35 3_flank no 740 43.597315 272.574122 158.0857185 2.198892637 0.369302 92 70 11135 "rRNA(18S,5.8S,25S)" 18S yes 7956 2561 2574 58.28805 299.51389 178.90097 2.252612695 0.172854 92 71 17850 YKR094C 3_exon no 468 441 457 43.235335 308.125852 175.6805935 2.24472379 0.028566 92 72 18443 YMR142C intron no 502 361 378 32.497104 299.230729 165.8639165 2.219751916 0.026689 92 73 1318 Ile3 IleTAT_ii 5_flank no 333 30.122838 300.9225 165.522669 2.218857481 -0.062914 92 74 13719 MT_Glu (and 5_flank processing site for COB) 3_flank no 368 316 337 29.82651 332.211861 181.0191855 2.257724606 -0.257338 92 75 18083 YLR344W intron no 547 421 436 43.690111 287.338509 165.51431 2.218835548 0.222108 92 76 14551 MT_21S 21S_rRNA3 yes 4639 2476 2500 27.455052 320.202752 173.828902 2.240121987 -0.274087 92 77 9924 RUF5-1 RUF5-1 yes 975 426 445 29.41837 308.057832 168.738101 2.227213157 -0.130772 92 78 21500 copy of SH2550 no 303 35.486262 312.344701 173.9154815 2.240338243 -0.033 92 79 4555 U3b (snR17b) U3b yes 662 331 348 29.605016 293.294162 161.449589 2.208036944 -0.036051 92 80 19320 YPL198W 3_exon no 509 461 478 31.77006 297.562434 164.666247 2.216604587 0.013355 92 81 19336 YPL241C exon/intron no 180 41 58 49.218462 340.273005 194.7457335 2.289467952 -0.207612 92 82 20393 YFL039C spliced yes 40 13 27 44.265444 293.517109 168.8912765 2.227607218 0.165152 92 83 2276 Phe2 PheGAA_ii 5_flank no 292 29.038113 310.587833 169.812973 2.229970865 -0.159416 92 84 14028 MT_COB exon4 yes 7308 4606 4627 30.117539 298.695573 164.406556 2.215919132 -0.049421 92 85 14282 MT_VAR1 VAR1 yes 1467 436 458 30.192918 312.533637 171.3632775 2.23391776 -0.130193 92 86 8449 snoRNA cluster 5 snR128 yes 586 411 425 30.295156 277.337658 153.816407 2.187002662 0.074246 92 87 17194 YHR021C intron no 650 461 477 30.413579 301.142325 165.777952 2.21952677 -0.054228 92 88 11431 "rRNA(18S,5.8S,25S)" 25S yes 7956 4041 4058 358.980268 621.027962 490.004115 2.690199727 0.056968 92 89 20596 YHR039C-A spliced yes 40 21 38 32.641011 310.616201 171.628606 2.234589675 -0.053892 92 90 2961 Ser1 SerAGA_i tRNA yes 283 36 e23 32.611649 283.685771 158.14871 2.199065654 0.128585 92 91 20066 YBR230C spliced yes 40 13 29 40.788503 282.068603 161.428553 2.207980354 0.267553 92 92 1481 Leu2 LeuCAA_ii 3_flank no 314 53.003206 337.373824 195.188515 2.29045426 -0.163478 92 93 13127 MT_COX1 ai3 no 13084 6106 6125 34.198602 287.629854 160.914228 2.206594446 0.15278 92 94 2747 Pro5 ProTGG_iv 3_flank no 303 34.003959 258.500675 146.252317 2.165102755 0.343413 92 95 11161 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2691 2716 29.772475 346.699033 188.235754 2.274702118 -0.363576 92 96 8132 snoRNA cluster 3; snR41 yes 743 171 187 34.633287 277.434258 156.0337725 2.193218609 0.232418 92 97 14888 MT_Ala 3_flank no 276 226 254 29.417335 303.600067 166.508701 2.221436933 -0.103971 92 98 21709 copy of SH11289 no 7956 76.178956 298.241769 187.2103625 2.272329884 0.281497 92 99 17010 YGR148C intron no 479 121 137 50.695425 326.318203 188.506814 2.275327053 -0.090438 92 100 9558 RUF3 RUF3 yes 631 176 192 1845.842185 1028.523352 1437.182769 3.157512001 1.211368 92 101 9791 RUF4 RUF4 yes 988 731 748 38.106706 340.066079 189.0863925 2.276660276 -0.259961 92 102 482 Asp2 AspGTC_ii 5_flank no 272 41.658262 332.917267 187.2877645 2.272509406 -0.188993 92 103 16184 YDR367W intron no 201 61 78 31.761111 366.753313 199.257212 2.299414049 -0.488844 92 104 8801 LSR1 / U2 RNA U2 yes 1375 646 658 43.116546 282.474909 162.7957275 2.211643003 0.2686 93 2 16589 YFL034C intron no 421 141 155 57.403786 338.150841 197.7773135 2.296176473 -0.142499 93 3 15795 YDL061C exon/intron no 509 41 58 30.921145 296.385537 163.653341 2.213924876 -0.00763 93 4 11984 "rRNA(18S,5.8S,25S)" 25S yes 7956 6806 6823 242.260287 770.659769 506.460028 2.704545175 -0.763761 93 5 7410 snR69 5_flank no 301 41.861364 295.56044 168.710902 2.227143147 0.139376 93 6 6207 snR40 snR40/3_flank no 297 30.596348 265.864719 148.2305335 2.170937672 0.145875 93 7 17190 YHR021C intron no 650 381 401 28.628824 333.681483 181.1551535 2.258050693 -0.306288 93 8 10024 RUF6 5_flank no 1251 67.910787 300.6504 184.2805935 2.265479602 0.214699 93 9 2330 Phe3 PheGAA_iii 5_flank no 291 32.175123 332.561415 182.368269 2.260949276 -0.228553 93 10 3797 RNaseP 5_flank no 569 48.718361 297.569316 173.1438385 2.238407041 0.142293 93 11 12291 5S rRNA NTS2 no 1420 411 427 39.723407 312.956171 176.339789 2.246350317 -0.025204 93 12 1461 Leu2 LeuCAA_ii tRNA yes 314 43 51 1430.698994 1264.715491 1347.707243 3.129595562 0.552291 93 13 4558 U3b (snR17b) U3b yes 662 346 363 31.813208 304.666285 168.2397465 2.225928605 -0.028666 93 14 46 Ala1 AlaAGC 3_flank no 273 34.842156 285.723021 160.2825885 2.204886348 0.179572 93 15 10570 RUF8 RUF8 yes 1151 776 792 33.32843 278.314596 155.821513 2.192627417 0.186482 93 16 17160 YHR016C exon/intron no 268 41 55 39.580705 294.176578 166.8786415 2.222400756 0.147374 93 17 11635 "rRNA(18S,5.8S,25S)" 25S yes 7956 5061 5078 44.282713 281.935205 163.108959 2.212477816 0.27638 93 18 7721 snoRNA cluster1 snR77 yes 1574 401 416 69.426659 306.636321 188.03149 2.274230587 0.174131 93 19 7814 snoRNA cluster1 intergenic no 1574 866 885 36.105167 314.338022 175.2215945 2.243587628 -0.046234 93 20 21842 copy of SH17172 no 650 36.816212 308.634558 172.725385 2.237356169 0.006709 93 21 18808 YNL301C 3_exon no 532 501 518 28.922706 290.465611 159.6941585 2.20328903 -0.059375 93 22 7319 snR66 snR66/3_flank no 286 31.2916 290.163441 160.7275205 2.206090245 0.04387 93 23 4072 SRP SRP yes 875 251 267 44.219388 292.790116 168.504752 2.226612153 0.171806 93 24 6465 snR45 snR45/3_flank no 372 35.673597 299.382589 167.528093 2.224087645 0.073927 93 25 14020 MT_COB exon4 yes 7308 4486 4505 31.365002 295.391367 163.3781845 2.213194066 0.013439 93 26 2899 Pro8 ProTGG_vii tRNA yes 305 16 33 47.295855 290.060995 168.678425 2.227059537 0.207072 93 27 3794 RNaseP 5_flank no 569 35.513212 288.922112 162.217662 2.210098138 0.159955 93 28 12135 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7561 7574 35.467077 277.211444 156.3392605 2.194068053 0.258739 93 29 19664 SIR1 2.4 SIR1 2.4 yes 401 1 20 33.288008 319.470387 176.3791975 2.246447362 -0.115225 93 30 13229 MT_COX1 ai4 no 13084 7636 7655 28.980607 307.520151 168.250379 2.225956051 -0.143211 93 31 4691 snR4 5_flank/snR4 no 386 35.16044 302.341925 168.7511825 2.227246825 0.043619 93 32 9477 RUF2 RUF2 yes 468 226 241 62.310079 324.708001 193.50904 2.286701258 -0.010659 93 33 1816 Leu8 LeuTAG_i 3_flank no 301 36.845835 298.374785 167.61031 2.224300729 0.095648 93 34 1465 Leu2 LeuCAA_ii tRNA yes 314 55 71 36.613147 287.476157 162.044652 2.209634702 0.184984 93 35 5535 snR33 5_flank no 383 32.269041 284.10813 158.1885855 2.199175143 0.114818 93 36 16855 YGL183C 3_exon no 183 141 157 73.129019 347.129335 210.129177 2.32248636 -0.104967 93 37 20886 YLR275W spliced yes 40 5 22 31.807563 243.886707 137.847135 2.139397744 0.321095 93 38 18050 YLR333C intron no 523 281 302 29.539389 325.544747 177.542068 2.249301274 -0.22814 93 39 20934 YLR406C spliced yes 40 1 17 55.289723 281.804307 168.547015 2.226721065 0.317064 93 40 1193 Ile1 IleAAT 5_flank no 274 29.05945 319.671905 174.3656775 2.241461002 -0.211727 93 41 16398 YER056C 5_exon no 497 21 38 30.861231 301.968798 166.4150145 2.221192507 -0.044016 93 42 1878 Leu9 LeuTAG_ii 3_flank no 301 36.683075 282.830645 159.75686 2.203459516 0.226036 93 43 9304 RUF1 RUF1 yes 750 96 112 44.634131 354.558215 199.596173 2.30015221 -0.341769 93 44 14105 MT_COB bi4 no 7308 5761 5780 27.066772 302.299265 164.6830185 2.216648819 -0.215596 93 45 12085 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7311 7328 45.203738 311.801088 178.502413 2.251644091 0.002383 93 46 5765 snR35 snR35 yes 740 11 28 33.521964 253.993272 143.757618 2.157630868 0.348594 93 47 14791 MT_Lys; Arg1; Gly 5_flank no 682 46 58 35.825345 246.00208 140.9137125 2.148953257 0.489144 93 48 10566 RUF8 RUF8 yes 1151 756 771 36.067535 289.428624 162.7480795 2.211515872 0.162039 93 49 16790 YGL103W intron no 611 481 498 32.133388 297.505788 164.819588 2.217008824 0.02558 93 50 14200 MT_COB exon6 yes 7308 7186 7205 30.133303 374.994012 202.5636575 2.30656153 -0.555734 93 51 18811 YNL302C exon/intron no 651 41 57 32.121755 290.518305 161.32003 2.207688294 0.068961 93 52 3322 Thr3 ThrTGT_i 5_flank no 272 31.969818 291.239907 161.6048625 2.208454424 0.059443 93 53 17926 YLR078C intron no 189 101 118 33.756226 293.519757 163.6379915 2.21388414 0.099929 93 54 9596 RUF3 RUF3 yes 631 366 387 29.455298 310.766052 170.110675 2.230731568 -0.145577 93 55 9630 RUF4 5_flank no 988 35.12115 291.310907 163.2160285 2.212762806 0.135009 93 56 10536 RUF8 RUF8 yes 1151 606 623 44.679387 282.187735 163.433561 2.213341244 0.274693 93 57 19364 YPR028W intron no 233 81 98 36.55656 279.062866 157.809713 2.19813373 0.257749 93 58 9507 RUF3 5_flank no 631 54.051978 347.069456 200.560717 2.302245874 -0.229796 93 59 15436 YBL072C intron no 408 281 301 32.541264 312.437652 172.489458 2.236762558 -0.069608 93 60 6421 snR45 5_flank no 372 28.74229 290.846257 159.7942735 2.203561212 -0.070842 93 61 3335 Thr3 ThrTGT_i tRNA yes 272 21 35 32.83763 272.540894 152.689262 2.183808496 0.209588 93 62 12891 MT_COX1 ai1 no 13084 2566 2591 29.147967 332.421544 180.7847555 2.257161806 -0.280557 93 63 18849 YNL312W 3_exon no 208 161 180 31.437327 320.532558 175.9849425 2.245475511 -0.147113 93 64 9097 snR14 / U4 RNA U4 yes 360 101 115 41.922379 314.937147 178.429763 2.251467299 -0.035801 93 65 2717 Pro5 ProTGG_iv 5_flank no 303 30.106956 282.014488 156.060722 2.193293612 0.042295 93 66 5235 snR30 snR30 yes 801 26 41 2222.432319 5788.816525 4005.624422 3.602670226 -1.324818 93 67 15018 MT_COX 2; ORF1 ORF1exon1 yes 2427 871 899 30.667309 330.572838 180.6200735 2.256766015 -0.233605 93 68 21790 copy of SH14650 no 4639 226.513601 464.712273 345.612937 2.538589991 0.119258 93 69 20159 YDL130W spliced yes 40 9 25 32.934836 291.813447 162.3741415 2.210516868 0.086874 93 70 12396 5S rRNA NTS2 no 1420 936 953 30.747388 291.997558 161.372473 2.207829455 0.013948 93 71 4 Ala1 AlaAGC 5_flank no 273 30.549624 309.928893 170.2392585 2.231059719 -0.102519 93 72 16286 YDR450W 5_exon no 535 1 18 32.335777 292.494786 162.4152815 2.210626889 0.063412 93 73 10718 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 476 493 34.054539 285.100632 159.5775855 2.20297189 0.164634 93 74 21324 YPR028W spliced yes 40 13 29 31.716932 276.725178 154.221055 2.18814367 0.145275 93 75 10978 "rRNA(18S,5.8S,25S)" 18S yes 7956 1776 1794 3115.971846 7685.367426 5400.669636 3.732447612 -1.382291 93 76 13724 MT_COB 5_flank no 7308 46 72 27.360823 310.562032 168.9614275 2.22778757 -0.234716 93 77 12581 MT_15S 15S yes 1848 466 483 35.299409 284.808697 160.054053 2.204266676 0.192892 93 78 14989 MT_COX 2; ORF1 COX2 no 2427 436 455 37.381919 306.826125 172.104022 2.23579102 0.024521 93 79 12921 MT_COX1 ai2 no 13084 3016 3034 30.532411 285.67524 158.1038255 2.198942378 0.046924 93 80 16164 YDR139C 5_exon no 173 1 15 50.941252 283.851176 167.396214 2.223745631 0.277841 93 81 12511 MT_ORF6 + ORF7 (hypothetical) 5_flank no 664 61 85 29.859083 299.53279 164.6959365 2.216682884 -0.063575 93 82 15875 YDL082W exon/intron no 465 41 57 36.094174 289.396781 162.7454775 2.211508929 0.162617 93 83 12021 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6991 7008 45.42398 328.845871 187.1349255 2.272154849 -0.138729 93 84 19420 YPR132W intron no 465 121 138 32.185791 309.009695 170.597743 2.231973281 -0.046892 93 85 14779 MT_ORF11; Leu; Gln tRNAGln yes 716 571 589 32.253264 307.990181 170.1217225 2.230759771 -0.037858 93 86 2789 Pro6 ProTGG_v tRNA/intron no 302 37 i12 51.947399 291.625959 171.786679 2.234989484 0.211313 93 87 7672 snoRNA cluster1 snR78 yes 1574 156 177 34.478324 293.975251 164.2267875 2.215443998 0.10486 93 88 17997 YLR287C intron no 530 121 143 28.351781 315.955381 172.153581 2.235916061 -0.215941 93 89 14862 MT_Ser2; Arg2 tRNAArg2 yes 360 196 218 27.329849 322.004646 174.6672475 2.242211476 -0.289192 93 90 12875 MT_COX1 ai1 no 13084 2326 2343 32.42961 298.581404 165.505507 2.218812449 0.028518 93 91 6658 snR48 3_flank no 313 50.887397 296.924096 173.9057465 2.240313933 0.158721 93 92 11194 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2856 2876 32.158503 282.214843 157.186673 2.196415722 0.123545 93 93 12187 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7821 7838 34.04463 309.160977 171.6028035 2.234524379 -0.024853 93 94 4775 snR5 snR5 yes 404 46 60 95.803105 305.709992 200.7565485 2.30266972 0.336234 93 95 14286 MT_VAR1 VAR1 yes 1467 496 520 29.743521 337.570918 183.6572195 2.264008005 -0.29804 93 96 471 Asp2 AspGTC_ii 5_flank no 272 35.680894 269.067062 152.373978 2.182910806 0.319919 93 97 18838 YNL302C intron no 651 581 601 33.520139 273.797045 153.658592 2.186556849 0.222602 93 98 21037 YMR125W spliced yes 40 21 38 49.362382 326.212022 187.787202 2.273665991 -0.097079 93 99 16209 YDR381W intron no 866 81 97 31.119612 280.081218 155.600415 2.192010751 0.102857 93 100 14803 MT_Lys; Arg1; Gly intergenic no 682 226 254 26.940385 306.537631 166.739008 2.222037213 -0.241408 93 101 10279 RUF7 RUF7 yes 700 6 23 34.512631 358.558221 196.535426 2.293440844 -0.418116 93 102 4411 telomerase RNA telomerase yes 1501 1091 1109 34.234537 317.060555 175.647546 2.244642087 -0.084903 93 103 4918 snR9 5_flank/snR9 no 387 37.872073 344.274734 191.0734035 2.28120024 -0.294579 93 104 9694 RUF4 RUF4 yes 988 246 266 31.859346 325.613225 178.7362855 2.252212728 -0.180457 94 2 13584 MT_COX1 exon6 yes 13084 12961 12977 72.807688 345.09051 208.949099 2.320040503 -0.092979 94 3 12795 MT_COX1 ai1 no 13084 1126 1148 30.406311 299.762914 165.0846125 2.217706595 -0.046024 94 4 12605 MT_15S 15S yes 1848 826 850 25.6577 282.220135 153.9389175 2.187348428 -0.220474 94 5 13015 MT_COX1 ai2 no 13084 4426 4448 29.280861 311.528491 170.404676 2.231481508 -0.156291 94 6 8276 snoRNA cluster4 snR67/intergenic no 638 166 185 29.098786 335.89635 182.497568 2.261257081 -0.301466 94 7 19421 YPR132W intron no 465 141 158 35.358673 325.097046 180.2278595 2.255821925 -0.142176 94 8 14264 MT_VAR1 5_flank/var1 no 1467 166 192 28.757136 318.682759 173.7199475 2.239849689 -0.216942 94 9 3062 Ser3 SerCGA tRNA yes 301 6 18 561.174206 748.366508 654.770357 2.81608901 0.251441 94 10 21809 copy of SH15489 no 433 34.148707 308.009621 171.079164 2.233197119 -0.014369 94 11 13955 MT_COB bi3 no 7308 3511 3532 30.561068 316.520811 173.5409395 2.239401944 -0.140877 94 12 16454 YER074W intron no 202 81 102 25.178435 268.116221 146.647328 2.166274154 -0.1973 94 13 21000 YML085C spliced yes 40 17 32 41.00127 300.945929 170.9735995 2.232929055 0.087027 94 14 4900 snR9 5_flank no 387 49.7144 308.961755 179.3380775 2.25367251 0.048086 94 15 11683 "rRNA(18S,5.8S,25S)" 25S yes 7956 5301 5314 63.524765 340.453417 201.989091 2.305327915 -0.121113 94 16 8780 LSR1 / U2 RNA U2 yes 1375 541 553 54.860157 312.549708 183.7049325 2.264120817 0.044585 94 17 12437 5S rRNA NTS2 no 1420 1141 1163 30.548809 306.229187 168.388998 2.226313713 -0.080436 94 18 5692 snR34 snR34 yes 750 381 399 29.240528 287.05102 158.145774 2.199057591 -0.026648 94 19 17539 YJL177W intron no 417 181 200 29.883804 292.255032 161.069418 2.207013089 -0.017423 94 20 14998 MT_COX 2; ORF1 COX2 no 2427 571 592 28.390432 317.897811 173.1441215 2.238407751 -0.225803 94 21 2074 Lys4 LysTTT_ii tRNA/intron no 296 36 i16 28.793464 293.037155 160.9153095 2.206597365 -0.078071 94 22 15083 MT_COX 2; ORF1 ORF1exon1 yes 2427 1846 1867 31.154905 308.576888 169.8658965 2.230106196 -0.073983 94 23 17374 YIL052C intron no 572 381 402 29.1546 332.143732 180.649166 2.256835961 -0.27878 94 24 16162 YDR129C intron/exon no 211 161 180 31.283581 310.389269 170.836425 2.232580475 -0.080461 94 25 2974 Ser1 SerAGA_i 3_flank no 283 31.232691 313.55175 172.3922205 2.236517664 -0.100825 94 26 21683 copy of SH10033 no 1251 37.510025 308.938731 173.224378 2.238609011 0.005661 94 27 21244 YOR312C spliced yes 40 21 38 33.198941 301.253181 167.226061 2.22330396 0.028766 94 28 4363 telomerase RNA telomerase yes 1501 851 867 31.022084 306.91532 168.968702 2.227806268 -0.068503 94 29 19781 Negative Control no 60 NA #VALUE! 37.253879 337.483035 187.368457 2.27269648 -0.241884 94 30 17306 YHR203C intron no 369 101 118 39.244795 313.693033 176.468914 2.246668213 -0.032882 94 31 8266 snoRNA cluster4 snR67 yes 638 116 128 49.586824 281.036781 165.3118025 2.218303861 0.300502 94 32 10513 RUF8 RUF8 yes 1151 491 515 28.541394 308.821412 168.681403 2.227067205 -0.166932 94 33 12567 MT_15S 15S yes 1848 256 282 28.406324 311.332745 169.8695345 2.230115497 -0.186797 94 34 2405 Phe4 PheGAA_iv tRNA/3_flank no 291 58 74 34.433062 291.265324 162.849193 2.211785611 0.127203 94 35 10698 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 376 394 30.15236 298.382503 164.2674315 2.215551467 -0.046284 94 36 3397 Thr4 ThrTGT_ii tRNA/3_flank no 272 29.967394 295.031598 162.499496 2.210852018 -0.031916 94 37 15812 YDL061C intron no 509 381 398 37.848412 279.193679 158.5210455 2.200086928 0.27097 94 38 11971 "rRNA(18S,5.8S,25S)" 25S yes 7956 6741 6760 647.526891 2908.876867 1778.201879 3.249981065 -1.798684 94 39 12406 5S rRNA NTS2 no 1420 986 998 78.332611 320.08905 199.2108305 2.299312946 0.123019 94 40 10806 "rRNA(18S,5.8S,25S)" 18S yes 7956 916 934 1373.76413 1365.744901 1369.754516 3.136642741 0.377761 94 41 16469 YER102W 5_exon no 460 21 37 83.216166 336.109798 209.662982 2.321521758 0.037816 94 42 16267 YDR447C 5_exon no 414 21 41 48.593166 364.555611 206.5743885 2.315076476 -0.389844 94 43 11595 "rRNA(18S,5.8S,25S)" 25S yes 7956 4861 4874 30.922345 261.191812 146.0570785 2.164522609 0.185956 94 44 20184 YDL191W spliced yes 40 13 25 37.049424 289.394452 163.221938 2.21277853 0.173453 94 45 15298 MT_9S 3_flank no 701 646 674 29.365625 305.504132 167.4348785 2.223845931 -0.117319 94 46 12191 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7841 7857 43.764554 285.959774 164.862164 2.217120996 0.235702 94 47 15903 YDL083C intron no 532 141 156 69.984374 347.304901 208.6446375 2.319407227 -0.127566 94 48 13702 MT_Glu (and 5_flank processing site for COB) 5_flank no 368 61 89 30.132166 322.912583 176.5223745 2.246799761 -0.192446 94 49 17873 YLL050C 3_exon no 279 261 279 30.283998 295.769257 163.0266275 2.212258544 -0.025539 94 50 7925 snoRNA cluster1 snR72 yes 1574 1421 1438 36.522321 309.075016 172.7986685 2.237540392 0.001993 94 51 11443 "rRNA(18S,5.8S,25S)" 25S yes 7956 4101 4118 16582.05878 12758.82734 14670.44306 4.16644323 -0.188214 94 52 8124 snoRNA cluster 3; snR41 yes 743 131 148 34.228912 278.015868 156.12239 2.193465191 0.216298 94 53 8060 snoRNA cluster 2 intergenic/snR61 no 739 536 552 35.988395 315.131196 175.5597955 2.244425066 -0.053571 94 54 431 Asp1 AspGTC_i 5_flank no 271 29.602191 306.248975 167.925583 2.225116865 -0.113424 94 55 14108 MT_COB bi4/intronic no 7308 5806 5827 29.292291 321.246884 175.2695875 2.243706565 -0.212443 94 56 4600 snR3 5_flank no 395 70.663239 325.836883 198.250061 2.29721333 0.031751 94 57 20707 YJL024C spliced yes 40 9 28 28.801115 321.620309 175.210712 2.243560654 -0.23224 94 58 11012 "rRNA(18S,5.8S,25S)" 18S yes 7956 1946 1964 44.296736 307.366457 175.8315965 2.245096919 0.038788 94 59 10066 RUF6 RUF6 yes 1251 176 192 34.49791 286.56204 160.529975 2.205556138 0.168215 94 60 5003 snR10 snR10 yes 445 46 60 30.679935 293.352911 162.016423 2.20955904 0.003128 94 61 7018 snR60 3_flank no 304 50.548921 321.040724 185.7948225 2.269033607 -0.049063 94 62 21873 copy of SH18603 no 549 62.933649 317.043916 189.9887825 2.27872796 0.053291 94 63 9737 RUF4 RUF4 yes 988 461 477 33.384104 277.623448 155.503776 2.191740939 0.192803 94 64 11911 "rRNA(18S,5.8S,25S)" 25S yes 7956 6441 6459 45.898691 339.486014 192.6923525 2.284864479 -0.220236 94 65 10353 RUF7 RUF7 yes 700 376 392 46.393269 296.259951 171.32661 2.233824822 0.146325 94 66 13977 MT_COB intronic no 7308 3841 3869 30.312099 317.413901 173.863 2.240207169 -0.154607 94 67 21879 copy of SH18399 no 422 32.594144 297.80997 165.202057 2.218015451 0.038565 94 68 1833 Leu9 LeuTAG_ii 5_flank no 301 32.706976 274.236286 153.471631 2.186028109 0.194007 94 69 1862 Leu9 LeuTAG_ii intron/tRNA no 301 i13 e3 30.616765 297.132793 163.874779 2.214512119 -0.022596 94 70 15927 YDL108W intron no 181 81 102 30.49589 311.124865 170.8103775 2.232514253 -0.111448 94 71 15686 YBR191W intron no 488 361 377 40.591025 307.623305 174.107165 2.240816644 0.024791 94 72 3706 Val3 ValCAC tRNA yes 273 11 25 74.286097 326.622016 200.4540565 2.302014849 0.048745 94 73 17779 YKL180W intron no 406 241 262 27.741427 317.519469 172.630448 2.237117398 -0.247758 94 74 16636 YFR024C intron no 218 61 75 69.087333 311.467934 190.2776335 2.279387741 0.133521 94 75 18810 YNL302C 5_exon no 651 21 38 65.432768 347.375464 206.404116 2.314718354 -0.158346 94 76 8640 snR19 / U1 RNA 3_flank no 868 31.221406 293.151586 162.186496 2.210014691 0.022661 94 77 18392 YMR116C 3_exon no 373 341 358 33.206618 287.540712 160.373665 2.205133054 0.122614 94 78 6877 snR56 snR56 yes 288 16 35 65.391427 338.858226 202.1248265 2.30561966 -0.09739 94 79 17238 YHR079C exon/intron no 186 41 60 33.484605 328.495028 180.9898165 2.25765414 -0.181631 94 80 16930 YGR001C 3_exon no 162 121 135 109.10739 332.135826 220.621608 2.343648046 0.224906 94 81 17250 YHR097C intron no 224 101 118 31.872861 291.455216 161.6640385 2.208613424 0.05491 94 82 4271 telomerase RNA telomerase yes 1501 391 408 32.022979 297.8327 164.9278395 2.21729397 0.019964 94 83 9584 RUF3 RUF3 yes 631 306 325 29.062287 296.4164 162.7393435 2.21149256 -0.0789 94 84 7868 snoRNA cluster1 snR73 yes 1574 1136 1153 32.181806 311.424516 171.803161 2.23503115 -0.066181 94 85 7761 snoRNA cluster1 snR76 yes 1574 601 618 42.492763 300.362289 171.427526 2.234080558 0.096096 94 86 6162 snR39B 3_flank no 296 29.193579 329.931719 179.562649 2.254216004 -0.265082 94 87 20995 YML073C spliced yes 40 21 36 38.484903 294.422514 166.4537085 2.221293475 0.142475 94 88 914 Glu3 GluTTC_ii 3_flank no 272 30.278414 289.966458 160.122436 2.204452189 0.01075 94 89 2366 Phe3 PheGAA_iii 3_flank no 291 34.366847 313.57625 173.9715485 2.240478229 -0.055997 94 90 2440 Phe5 PheGAA_v 5_flank no 291 92.812655 403.69276 248.2527075 2.394893994 -0.316565 94 91 11633 "rRNA(18S,5.8S,25S)" 25S yes 7956 5051 5066 742.640078 2125.709391 1434.174735 3.156602067 -1.123326 94 92 18337 YML124C intron no 398 61 80 36.029189 273.780163 154.904676 2.190064528 0.298091 94 93 17017 YGR148C intron no 479 261 277 39.94632 367.741926 203.844123 2.309298195 -0.465398 94 94 7741 snoRNA cluster1 intergenic no 1574 501 518 35.775735 262.387598 149.0816665 2.173424239 0.368973 94 95 14964 MT_COX 2; ORF1 5_flank no 2427 61 80 35.700449 336.634724 186.1675865 2.269904069 -0.238741 94 96 7911 snoRNA cluster1 intergenic no 1574 1351 1370 31.608506 275.312217 153.4603615 2.185996217 0.149946 94 97 8892 LSR1 / U2 RNA U2 yes 1375 1101 1113 39.570039 275.064348 157.3171935 2.19677619 0.326214 94 98 15075 MT_COX 2; ORF1 ORF1exon1 yes 2427 1726 1747 29.4144 339.945801 184.6801005 2.266420102 -0.319973 94 99 1239 Ile1 IleAAT 3_flank no 274 35.226659 259.355681 147.29117 2.168176712 0.374222 94 100 18862 YNR053C intron no 631 221 238 34.996134 292.38783 163.691982 2.214027407 0.124414 94 101 2006 Lys3 LysTTT_i 5_flank no 296 32.775199 298.41542 165.5953095 2.219048031 0.04061 94 102 20974 YML034W spliced yes 40 17 33 73.059977 336.37526 204.7176185 2.311155221 -0.029935 94 103 19992 YBL092W spliced yes 40 25 39 93.373442 293.459345 193.4163935 2.286493281 0.418267 94 104 16596 YFL034C intron no 421 281 297 38.003831 326.834403 182.419117 2.261070349 -0.150481 95 2 10153 RUF6 RUF6 yes 1251 611 632 29.885699 325.776132 177.8309155 2.250007264 -0.217277 95 3 18085 YLR344W intron no 547 461 478 33.745301 313.841146 173.7932235 2.240032839 -0.065641 95 4 965 Gly1 GlyCCC_i 3_flank no 272 36.509853 326.68541 181.5976315 2.25911018 -0.152869 95 5 14401 MT_21S 21S_rRNA3 yes 4639 226 248 28.709864 271.901592 150.305728 2.176975531 0.017095 95 6 9889 RUF5-1 RUF5-1 yes 975 251 268 33.177182 304.474651 168.8259165 2.227439116 0.002208 95 7 14725 MT_Cys; His intergenic no 456 196 212 32.891744 277.654002 155.272873 2.191095589 0.177085 95 8 268 Arg4 ArgCCT 5_flank no 272 29.873478 307.693995 168.7837365 2.227330597 -0.112565 95 9 5148 snR11 3_flank no 458 36.134623 285.098163 160.616393 2.205789869 0.200064 95 10 18986 YOR096W intron no 501 401 420 35.127438 294.697486 164.912462 2.217253475 0.106519 95 11 18110 YLR367W intron no 583 421 437 36.054063 305.180218 170.6171405 2.232022659 0.03092 95 12 15669 YBR191W 5_exon no 488 21 40 34.311833 318.529556 176.4206945 2.246549527 -0.095393 95 13 1064 Gly3 GlyGCC tRNA yes 271 59 71 41.867876 294.957137 168.4125065 2.22637434 0.145099 95 14 21670 copy of SH9620 no 631 29.162514 284.745395 156.9539545 2.195772262 -0.02006 95 15 5691 snR34 snR34 yes 750 376 392 40.748266 309.102347 174.9253065 2.242852644 0.011743 95 16 17583 YJL191W intron no 508 181 200 29.915065 303.150176 166.5326205 2.221499316 -0.083721 95 17 4073 SRP SRP yes 875 256 270 83.041738 356.474108 219.757923 2.341944542 -0.101267 95 18 5043 snR10 3_flank no 445 29.122197 293.622592 161.3723945 2.207829243 -0.06309 95 19 13899 MT_COB intronic no 7308 2671 2698 28.707958 296.442097 162.5750275 2.211053836 -0.098075 95 20 4151 SRP SRP yes 875 646 663 32.290718 323.945148 178.117933 2.250707647 -0.162195 95 21 12144 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7606 7624 30.643524 308.93872 169.791122 2.229914978 -0.093423 95 22 10303 RUF7 RUF7 yes 700 126 140 30.903391 273.009711 151.956551 2.181719428 0.126076 95 23 19413 YPR098C 3_exon no 196 161 178 32.080878 299.149854 165.615366 2.219100629 0.013726 95 24 18624 YNL096C intron no 445 101 117 39.48964 296.164158 167.826899 2.22486157 0.128349 95 25 7793 snoRNA cluster1 snR75 yes 1574 761 777 33.112044 285.622163 159.3671035 2.202398679 0.131961 95 26 19717 Negative Control no 60 NA #VALUE! 33.035306 304.406565 168.7209355 2.227168975 0.000986 95 27 3260 Thr2 ThrCGT 5_flank no 272 30.857844 286.643421 158.7506325 2.200715464 0.051766 95 28 10535 RUF8 RUF8 yes 1151 601 618 31.826305 318.764782 175.2955435 2.243770875 -0.128354 95 29 16065 YDR005C 5_exon no 180 21 40 32.79177 292.285832 162.538801 2.210957052 0.07935 95 30 16675 YFR032C intron/exon no 431 381 398 32.708547 447.685491 240.197019 2.380567613 -1.033765 95 31 11615 "rRNA(18S,5.8S,25S)" 25S yes 7956 4961 4978 1884.164116 2693.373418 2288.768767 3.359601918 -0.282753 95 32 2110 Met1 MetCAT_i 5_flank no 273 30.450738 296.295 163.372869 2.213179936 -0.023075 95 33 2151 Met1 MetCAT_i 3_flank no 273 34.467656 332.661622 183.564639 2.263789025 -0.208776 95 34 20451 YGL137W spliced yes 40 5 24 39.480296 346.685123 193.0827095 2.285743385 -0.307794 95 35 9985 RUF5-1 RUF5-1 yes 975 731 752 30.097965 285.652663 157.875314 2.198314227 0.024762 95 36 13708 MT_Glu (and 5_flank processing site for COB) tRNA yes 368 151 167 44.200661 300.958917 172.579789 2.236989934 0.096265 95 37 16555 YER133W intron no 625 261 279 29.736199 267.020059 148.378129 2.17136989 0.095795 95 38 12943 MT_COX1 ai2 no 13084 3346 3370 31.519216 354.345189 192.9322025 2.285404722 -0.39388 95 39 21536 copy of SH3942 no 540 29.293677 292.338449 160.816063 2.206329426 -0.048131 95 40 2772 Pro6 ProTGG_v 5_flank no 302 42.998774 309.758139 176.3784565 2.246445538 0.013292 95 41 7312 snR66 snR66 yes 286 51 67 207.607598 445.940353 326.7739755 2.514247462 0.12057 95 42 4082 SRP SRP yes 875 301 316 72.688574 299.454195 186.0713845 2.269679589 0.251829 95 43 12519 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 181 205 31.041787 327.533621 179.287704 2.253550506 -0.205753 95 44 16568 YER133W intron no 625 521 542 29.23976 314.122108 171.680934 2.234722067 -0.173023 95 45 11757 "rRNA(18S,5.8S,25S)" 25S yes 7956 5671 5684 6181.178604 9053.809226 7617.493915 3.881812116 -0.820797 95 46 9257 snR6 / U6 RNA 3_flank no 312 73.593468 307.664908 190.629188 2.280189398 0.190307 95 47 7602 snR189 snR189 yes 389 81 98 32.052199 282.296813 157.174506 2.196382104 0.119553 95 48 7973 snoRNA cluster 2 snR57 yes 739 101 120 40.533795 339.861073 190.197434 2.279204653 -0.249513 95 49 18331 YML094W intron/exon no 183 121 137 30.416686 282.297064 156.356875 2.194116982 0.056864 95 50 690 Gln3 GlnTTG_ii 5_flank no 272 32.558835 344.066478 188.3126565 2.27487951 -0.308164 95 51 10290 RUF7 RUF7 yes 700 61 80 36.660131 306.428751 171.544441 2.234376649 0.026362 95 52 15714 YBR220C intron no 521 441 462 33.397698 284.687726 159.042712 2.201513773 0.146965 95 53 11523 "rRNA(18S,5.8S,25S)" 25S yes 7956 4501 4519 40.2993 306.171647 173.2354735 2.238636827 0.037349 95 54 20463 YGL183C spliced yes 40 9 24 43.966219 289.231769 166.598994 2.221672375 0.204528 95 55 3605 Val1 ValAAC_i tRNA yes 274 20:A 36 33.474656 295.061348 164.268002 2.215552975 0.083472 95 56 20724 YJL177W spliced yes 40 5 17 35.136444 271.677159 153.4068015 2.185844615 0.286088 95 57 21212 YOR096W spliced yes 40 21 35 42.764012 300.116658 171.440335 2.234113007 0.099246 95 58 20445 YGL103W spliced yes 40 5 19 57.360048 303.09102 180.225534 2.255816321 0.137359 95 59 21626 copy of SH7731 no 1574 28.79101 323.526468 176.158739 2.245904193 -0.243486 95 60 2197 Met2 MetCAT_ii 3_flank no 272 32.7511 284.904809 158.8279545 2.200926943 0.125146 95 61 2025 Lys3 LysTTT_i tRNA yes 296 48 60 77.491004 311.927754 194.709379 2.289386872 0.17972 95 62 853 Glu2 GluTTC_i tRNA yes 272 31 43 53.018025 287.962329 170.490177 2.231699362 0.249696 95 63 336 Arg5 ArgTCT tRNA yes 272 16 28 31.386977 265.338022 148.3624995 2.171324141 0.188156 95 64 5084 snR11 snR11 yes 458 21 35 238.038299 436.586936 337.3126175 2.528032587 0.28744 95 65 19440 YPR187W intron no 176 61 78 31.963414 307.319643 169.6415285 2.229532177 -0.039713 95 66 7072 snR62 3_flank no 300 36.309942 315.881507 176.0957245 2.245748812 -0.059404 95 67 11998 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6876 6892 90.174242 331.199103 210.6866725 2.323637064 0.115716 95 68 3410 Thr4 ThrTGT_ii 3_flank no 272 32.42988 296.909648 164.669764 2.216613863 0.038864 95 69 13993 MT_COB intronic no 7308 4081 4103 30.317793 295.650934 162.9843635 2.212145941 -0.023638 95 70 14074 MT_COB bi4 no 7308 5296 5318 28.129375 331.520622 179.8249985 2.254850065 -0.312704 95 71 2661 Pro4 ProTGG_iii 5_flank no 302 32.003944 283.623986 157.813965 2.198145431 0.109344 95 72 19941 YBL027W spliced yes 40 21 35 31.753398 280.411882 156.08264 2.193354602 0.122108 95 73 3823 RNaseP RNaseP yes 569 81 95 47.607548 309.263939 178.4357435 2.251481855 0.03487 95 74 15514 YBR048W intron no 611 241 258 33.300863 304.521838 168.9113505 2.227658834 0.003365 95 75 11154 "rRNA(18S,5.8S,25S)" 18S yes 7956 2656 2671 187.44459 365.163376 276.303983 2.441387145 0.429998 95 76 14087 MT_COB bi4 no 7308 5491 5511 31.119493 308.965806 170.0426495 2.230557863 -0.077489 95 77 5866 snR35 snR35 yes 740 516 531 69.081951 300.427481 184.754716 2.266595533 0.222677 95 78 10466 RUF8 RUF8 yes 1151 256 278 28.299261 297.04955 162.6744055 2.211319228 -0.12308 95 79 8012 snoRNA cluster 2 intergenic no 739 296 317 29.465832 302.836523 166.1511775 2.220503423 -0.097615 95 80 6248 snR42 snR42 yes 551 21 37 62.062092 331.024818 196.543455 2.293458586 -0.060798 95 81 14459 MT_21S 21S_rRNA3 yes 4639 1096 1117 29.848258 298.456205 164.1522315 2.215246791 -0.057324 95 82 8980 snR17a / U3a U3a yes 690 186 202 36.093195 294.919488 165.5063415 2.218814639 0.115888 95 83 15154 MT_Thr1 3_flank no 272 241 269 32.103576 324.46418 178.283878 2.251112072 -0.168558 95 84 15983 YDL136W intron no 505 241 258 32.137978 283.584681 157.8613295 2.198275756 0.113963 95 85 5612 snR34 5_flank no 750 40.339621 297.847211 169.093416 2.228126698 0.11446 95 86 324 Arg5 ArgTCT 5_flank no 272 30.113368 311.42283 170.768099 2.232406744 -0.126392 95 87 1350 Ile3 IleTAT_ii tRNA/3_flank no 333 36.262682 290.860221 163.5614515 2.213680956 0.15208 95 88 17164 YHR016C intron no 268 121 135 49.622503 302.424091 176.023297 2.245570151 0.104089 95 89 18706 YNL130C intron no 541 201 217 44.422371 317.545761 180.984066 2.257640341 -0.050178 95 90 5878 snR35 3_flank no 740 30.000346 288.540907 159.2706265 2.202135688 0.006318 95 91 20099 YDL029W spliced yes 40 21 36 31.910734 280.041816 155.976275 2.193058544 0.1297 95 92 10503 RUF8 RUF8 yes 1151 441 457 50.046573 300.242744 175.1446585 2.243396897 0.125288 95 93 16598 YFL034C intron no 421 321 338 35.689463 314.421017 175.05524 2.243175115 -0.048029 95 94 16929 YGR001C intron/exon no 162 101 118 39.63332 297.887595 168.7604575 2.227270694 0.112468 95 95 14146 MT_COB intronic no 7308 6376 6392 32.544202 294.990221 163.7672115 2.214226954 0.05448 95 96 2443 Phe5 PheGAA_v 5_flank/tRNA no 291 31.518377 307.547591 169.532984 2.229254206 -0.055719 95 97 1609 Leu5 LeuCAA_v 5_flank no 315 31.485211 291.331479 161.408345 2.207925984 0.042914 95 98 13838 MT_COB bi2 no 7308 1756 1775 29.419826 309.457377 169.4386015 2.229012358 -0.139066 95 99 3374 Thr4 ThrTGT_ii 5_flank no 272 27.323949 305.926307 166.625128 2.221740496 -0.216784 95 100 9413 RUF2 5_flank no 468 29.164954 307.954722 168.559838 2.226754105 -0.139189 95 101 145 Arg1 ArgACG_i 3_flank no 273 30.964403 390.253566 210.6089845 2.323476894 -0.664696 95 102 858 Glu2 GluTTC_i tRNA yes 272 57 69 54.534557 298.743883 176.63922 2.247087138 0.159766 95 103 16956 YGR029W intron no 183 81 98 34.526423 304.111469 169.318946 2.228705556 0.021663 95 104 3053 Ser3 SerCGA 5_flank no 301 36.34367 333.659578 185.001624 2.267175541 -0.212307 96 2 18755 YNL162W intron no 612 421 436 125.835946 417.243085 271.5395155 2.433833039 -0.169967 96 3 18933 YOL121C intron no 490 321 338 30.332006 294.089923 162.2109645 2.210080207 -0.013401 96 4 1554 Leu4 LeuCAA_iv 5_flank no 314 32.138827 290.390557 161.264692 2.207539291 0.070326 96 5 14735 MT_Cys; His tRNAhis/3_flank no 456 346 367 28.080585 299.637464 163.8590245 2.214470365 -0.146684 96 6 7799 snoRNA cluster1 snR75 yes 1574 791 812 30.655888 315.198682 172.927285 2.237863523 -0.129936 96 7 19479 ADH1 ADH1 yes 400 281 296 80.194471 315.720121 197.957296 2.296571513 0.167416 96 8 17099 YHL001W intron no 498 361 381 38.392832 308.002353 173.1975925 2.238541851 0.016267 96 9 14531 MT_21S 21S_rRNA3 yes 4639 2176 2198 30.730099 323.86814 177.2991195 2.248706579 -0.182119 96 10 19492 YPT1 YPT1 yes 402 141 155 37.926762 279.982186 158.954474 2.201272756 0.264857 96 11 8512 snR19 / U1 RNA U1 yes 868 56 77 31.471215 314.25151 172.8613625 2.237697932 -0.097759 96 12 19594 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 181 202 28.78201 271.74708 150.264545 2.176856521 0.021752 96 13 20623 YHR101C spliced yes 40 9 26 47.361385 296.346373 171.853879 2.235159339 0.148466 96 14 18639 YNL096C 3_exon no 445 401 413 29.121197 271.549324 150.3352605 2.177060854 0.040925 96 15 7177 snR64 5_flank no 301 29.427901 265.761493 147.594697 2.169070754 0.085893 96 16 19236 YPL090C intron no 494 281 299 33.636879 327.048913 180.342896 2.256099039 -0.168849 96 17 13493 MT_COX1 exon5g yes 13084 11596 11613 34.20998 321.530324 177.870152 2.250103076 -0.119797 96 18 3392 Thr4 ThrTGT_ii tRNA yes 272 46 62 34.84675 275.237663 155.0422065 2.19044994 0.25347 96 19 1598 Leu4 LeuCAA_iv 3_flank no 314 31.476594 281.21712 156.346857 2.194089155 0.107685 96 20 14309 MT_VAR1 VAR1 yes 1467 841 863 25.890626 312.06137 168.975998 2.22782502 -0.326946 96 21 202 Arg2 ArgACG_ii 3_flank no 273 40.610275 354.475142 197.5427085 2.295661004 -0.364355 96 22 12399 5S rRNA NTS2 no 1420 951 968 47.197813 315.151411 181.174612 2.25809734 -0.017035 96 23 330 Arg5 ArgTCT 5_flank/tRNA no 272 30.699004 292.818822 161.758913 2.20886822 0.007132 96 24 3663 Val2 ValAAC_ii tRNA yes 274 55 67 63.27625 321.842113 192.5591815 2.284564231 0.017248 96 25 5669 snR34 snR34 yes 750 266 283 36.989164 314.367653 175.6784085 2.244718388 -0.044289 96 26 21650 copy of SH8770 no 1375 119.919483 397.678668 258.7990755 2.412962721 -0.104235 96 27 8984 snR17a / U3a U3a yes 690 206 222 54.606467 316.537286 185.5718765 2.268512159 0.010392 96 28 131 Arg1 ArgACG_i tRNA yes 273 31 43 75.513609 316.714463 196.114036 2.292508677 0.130611 96 29 528 Cys1 CysGCA 5_flank no 272 32.540717 294.055743 163.29823 2.212981477 0.06021 96 30 8037 snoRNA cluster 2 snR55/intergenic no 739 421 440 30.413766 299.856721 165.1352435 2.217839771 -0.046344 96 31 2278 Phe2 PheGAA_ii 5_flank/tRNA no 292 36.541912 296.313751 166.4278315 2.221225955 0.109348 96 32 19923 YAL030W spliced yes 40 21 38 32.353085 319.56498 175.9590325 2.245411565 -0.127752 96 33 19590 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 101 122 31.256548 273.366822 152.311685 2.182733223 0.141991 96 34 9602 RUF3 RUF3 yes 631 396 413 364.791833 681.396505 523.094169 2.718579879 -0.08735 96 35 13457 MT_COX1 intronic no 13084 11056 11075 30.040255 295.560832 162.8005435 2.21165585 -0.03268 96 36 13963 MT_COB bi3 no 7308 3631 3655 27.869189 298.346987 163.108088 2.212475497 -0.152678 96 37 16613 YFL039C 5_exon no 408 1 17 31.736566 244.222301 137.9794335 2.139814358 0.315792 96 38 8906 LSR1 / U2 RNA U2/3_flank no 1375 35.543718 332.826908 184.185313 2.265254996 -0.207357 96 39 9542 RUF3 RUF3 yes 631 96 112 35.317703 269.918732 152.6182175 2.183606377 0.303416 96 40 20260 YDR397C spliced yes 40 9 21 81.029596 334.44229 207.735943 2.317511646 0.035094 96 41 18227 YML026C intron no 501 141 153 35.046062 324.967343 180.0067025 2.255288676 -0.141872 96 42 2161 Met2 MetCAT_ii 5_flank no 272 36.042317 360.534037 198.288177 2.29729682 -0.42821 96 43 549 Cys1 CysGCA tRNA yes 272 46 63 39.135233 262.193174 150.6642035 2.17801008 0.440074 96 44 847 Glu2 GluTTC_i tRNA yes 272 1 18 2690.20717 4171.924598 3431.065884 3.535429058 -0.547838 96 45 7473 snR71 5_flank/snR71 no 290 31.580273 282.816701 157.198487 2.196448362 0.100676 96 46 4208 telomerase RNA telomerase yes 1501 76 93 41.996797 294.899352 168.4480745 2.226466051 0.145927 96 47 19392 YPR043W intron no 503 421 443 36.207386 269.522806 152.865096 2.184308333 0.332098 96 48 10126 RUF6 RUF6 yes 1251 476 491 36.487049 314.685349 175.586199 2.244490378 -0.048359 96 49 8401 snoRNA cluster 5 snR190 yes 586 171 188 32.556315 308.185255 170.370785 2.231395124 -0.03555 96 50 5119 snR11 snR11 yes 458 196 210 40.975019 299.581073 170.278046 2.231158658 0.099669 96 51 4398 telomerase RNA telomerase yes 1501 1026 1043 34.720889 308.343667 171.532278 2.234345855 -0.010167 96 52 2550 Pro2 ProTGG_i 5_flank/tRNA no 303 36.659987 302.459061 169.559524 2.229322189 0.059955 96 53 13675 MT_ATP6 3_flank no 980 931 952 32.302343 320.455542 176.3789425 2.246446734 -0.13528 96 54 6917 snR58 5_flank no 296 50.405702 295.491971 172.9488365 2.237917645 0.169148 96 55 3927 RNase MRP RNaseMRP yes 540 51 73 29.700086 304.895847 167.2979665 2.223490662 -0.101824 96 56 19984 YBL091C-A spliced yes 40 17 33 35.428689 312.179317 173.804003 2.240059775 -0.032364 96 57 13755 MT_COB exon1/intron no 7308 511 527 45.126335 286.88632 166.0063275 2.220124642 0.230571 96 58 11737 "rRNA(18S,5.8S,25S)" 25S yes 7956 5571 5591 29.077967 330.61129 179.8446285 2.254897471 -0.273014 96 59 15495 YBL092W intron no 433 281 296 31.96817 280.213569 156.0908695 2.1933775 0.130449 96 60 9342 RUF1 RUF1 yes 750 286 302 36.918768 298.572234 167.745501 2.224650881 0.094832 96 61 3114 Ser4 SerGCT 5_flank no 301 31.082299 319.695489 175.388894 2.244002089 -0.145353 96 62 20170 YDL137W spliced yes 40 1 17 80.196121 316.067346 198.1317335 2.296954039 0.16479 96 63 4621 snR3 snR3 yes 395 21 37 157.415086 383.450153 270.4326195 2.432059075 0.184233 96 64 9499 RUF2 3_flank no 468 70.172042 329.768008 199.970025 2.300964901 -0.000749 96 65 10337 RUF7 RUF7 yes 700 296 315 29.810314 303.441114 166.625714 2.221742023 -0.08915 96 66 16950 YGR027C intron/exon no 412 361 381 32.001074 305.761572 168.881323 2.227581623 -0.029125 96 67 15386 YBL040C 5_exon no 197 1 13 44.386428 311.814705 178.1005665 2.250665301 -0.000336 96 68 21617 copy of SH7318 no 286 33.126204 305.623432 169.374818 2.228848842 -0.007736 96 69 5375 snR31 5_flank no 425 29.985183 308.811662 169.3984225 2.228909362 -0.115344 96 70 17734 YKL156W intron no 450 261 279 31.86302 315.749468 173.806244 2.240065374 -0.104388 96 71 6829 snR52 snR52 yes 292 51 70 29.648341 315.527565 172.587953 2.237010478 -0.166752 96 72 19905 YAL001C spliced yes 40 1 18 37.46323 320.569335 179.0162825 2.252892534 -0.09771 96 73 11388 "rRNA(18S,5.8S,25S)" 25S yes 7956 3826 3845 43572.14594 16845.55041 30208.84817 4.480134166 0.532392 96 74 12056 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7166 7182 47.028199 295.338345 171.183272 2.233461323 0.156807 96 75 7047 snR62 snR62 yes 300 26 45 31.053051 286.977442 159.0152465 2.201438767 0.056207 96 76 10533 RUF8 RUF8 yes 1151 591 612 31.050949 317.489343 174.270146 2.241222995 -0.129897 96 77 13969 MT_COB bi3 no 7308 3721 3745 27.171857 329.816602 178.4942295 2.25162418 -0.33938 96 78 21908 copy of SH19403 no 186 53.243089 312.788804 183.0159465 2.262488932 0.033727 96 79 11823 "rRNA(18S,5.8S,25S)" 25S yes 7956 6001 6016 45.513635 277.688681 161.601158 2.208444469 0.321288 96 80 4007 SRP 5_flank no 875 31.679996 290.846157 161.2630765 2.207534941 0.052424 96 81 15374 YBL027W intron no 484 241 262 27.82067 305.421577 166.6211235 2.221730059 -0.186593 96 82 6548 snR46 3_flank no 397 29.961219 318.534534 174.2478765 2.241167494 -0.173254 96 83 17982 YLR275W 5_exon no 190 1 15 32.048643 290.225019 161.136831 2.207194818 0.068441 96 84 10636 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 66 83 34.085911 311.113583 172.599747 2.237040155 -0.039911 96 85 15460 YBL087C intron no 604 361 377 54.526591 332.856968 193.6917795 2.287111189 -0.120178 96 86 15874 YDL082W 5_exon no 465 21 35 82.139579 325.538024 203.8388015 2.309286857 0.105728 96 87 18345 YML124C intron no 398 221 237 34.024105 284.25316 159.1386325 2.201775622 0.169181 96 88 581 Gln1 GlnCTG 5_flank no 272 29.943698 325.524618 177.734158 2.249770901 -0.213831 96 89 10314 RUF7 RUF7 yes 700 181 202 29.908129 296.622424 163.2652765 2.212893828 -0.043884 96 90 10322 RUF7 RUF7 yes 700 221 238 29.833762 296.877667 163.3557145 2.213134332 -0.048067 96 91 10027 RUF6 5_flank no 1251 56.114704 306.539169 181.3269365 2.258462324 0.101561 96 92 14975 MT_COX 2; ORF1 COX2 no 2427 226 250 33.626715 290.188169 161.907442 2.209266811 0.118867 96 93 13883 MT_COB intronic no 7308 2431 2457 31.502736 301.746416 166.624576 2.221739057 -0.021176 96 94 11316 "rRNA(18S,5.8S,25S)" 25S yes 7956 3466 3483 8414.618311 4728.061667 6571.339989 3.817653937 0.6381 96 95 16577 YER179W intron no 192 81 97 45.432916 285.498604 165.46576 2.218708138 0.244836 96 96 21892 copy of SH18802 no 532 37.39938 350.34803 193.873705 2.28751891 -0.344335 96 97 5316 snR30 snR30 yes 801 431 445 45.42272 277.796141 161.6094305 2.2084667 0.320024 96 98 10768 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 726 741 86.450766 346.203973 216.3273695 2.335111469 -0.010975 96 99 3054 Ser3 SerCGA 5_flank no 301 89.222791 316.582149 202.90247 2.307287334 0.215837 96 100 20124 YDL079C spliced yes 40 17 34 31.203603 290.072287 160.637945 2.20584814 0.041508 96 101 13700 MT_Glu (and 5_flank processing site for COB) 5_flank no 368 31 59 33.055148 323.258475 178.1568115 2.250802431 -0.147263 96 102 20198 YDR005C spliced yes 40 21 40 32.908905 313.279061 173.093983 2.238281971 -0.071603 96 103 8295 snoRNA cluster4 intergenic no 638 261 278 30.795383 296.11692 163.4561515 2.213401269 -0.010216 96 104 1009 Gly2 GlyCCC_ii tRNA yes 272 36 48 156.931331 327.111223 242.021277 2.383853548 0.514851 97 2 19852 Negative Control no 60 NA #VALUE! 40.76106 263.549334 152.155197 2.182286791 0.444178 97 3 4616 snR3 5_flank/snR3 no 395 32.677186 331.679054 182.17812 2.260496216 -0.215576 97 4 14372 MT_ORF9; ORF10 ORF10 yes 578 346 358 40.319564 237.172466 138.746015 2.142220518 0.679851 97 5 15658 YBR189W intron no 513 301 316 59.43905 296.489719 177.9643845 2.250333097 0.204927 97 6 14655 MT_21S 21S_rRNA4 yes 4639 4036 4053 38.540288 338.000947 188.2706175 2.274782547 -0.241642 97 7 12363 5S rRNA NTS2 no 1420 771 788 31.463454 265.48385 148.473652 2.171649391 0.191206 97 8 8392 snoRNA cluster 5 snR190 yes 586 126 138 47.920527 270.988446 159.4544865 2.202636743 0.395504 97 9 15197 MT_COX3 cox3 no 1010 376 395 30.81233 310.494034 170.653182 2.232114391 -0.096932 97 10 12858 MT_COX1 ai1 no 13084 2071 2092 32.460646 300.373828 166.417237 2.221198307 0.018497 97 11 10712 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 446 462 41.549621 326.500244 184.0249325 2.264876667 -0.135978 97 12 6286 snR42 snR42 yes 551 211 228 30.586339 308.142367 169.364353 2.228822007 -0.090621 97 13 13518 MT_COX1 intronic no 13084 11971 11993 27.038816 296.658278 161.848547 2.209108805 -0.192118 97 14 10283 RUF7 RUF7 yes 700 26 42 71.913209 367.391711 219.65246 2.341736072 -0.249213 97 15 13483 MT_COX1 intronic no 13084 11446 11467 27.488791 326.317183 176.902987 2.247735166 -0.307632 97 16 9333 RUF1 RUF1 yes 750 241 260 35.40143 309.040834 172.221132 2.236086439 -0.007711 97 17 3199 Ser5 SerTGA 3_flank no 282 30.176285 302.555327 166.365806 2.221064068 -0.071026 97 18 40 Ala1 AlaAGC 3_flank no 273 56.137195 295.508126 175.8226605 2.245074847 0.196552 97 19 9954 RUF5-1 RUF5-1 yes 975 576 592 33.133477 290.207484 161.6704805 2.208630729 0.103314 97 20 15996 YDL137W 5_exon no 432 1 17 37.617834 304.41094 171.014387 2.233032648 0.047176 97 21 13644 MT_ATP6 ATP6 yes 980 466 487 29.913509 279.720722 154.8171155 2.189818972 0.043154 97 22 13307 MT_COX1 ai5a no 13084 8806 8825 29.13637 297.469569 163.3029695 2.212994082 -0.079667 97 23 19429 YPR132W intron no 465 301 318 32.374464 299.898998 166.136731 2.220465661 0.018633 97 24 6915 snR58 5_flank no 296 30.402696 292.302951 161.3528235 2.207776569 0.000251 97 25 8488 snR19 / U1 RNA 5_flank no 868 34.557994 297.579083 166.0685385 2.220287364 0.075704 97 26 2256 Phe1 PheGAA_i 3_flank no 292 32.470415 288.447198 160.4588065 2.205363558 0.093407 97 27 7331 snR66 3_flank no 286 32.422858 266.037829 149.2303435 2.173857139 0.235101 97 28 6056 snR37 snR37 yes 586 196 213 34.425555 300.80012 167.6128375 2.224307278 0.047508 97 29 1219 Ile1 IleAAT tRNA yes 274 55 67 46.744137 296.568851 171.656494 2.234660238 0.144539 97 30 4165 SRP 3_flank no 875 34.319354 330.130548 182.224951 2.260607842 -0.18783 97 31 20687 YIL133C spliced yes 40 5 21 40.440915 300.469503 170.455209 2.231610278 0.090197 97 32 4149 SRP SRP yes 875 636 652 40.395267 294.891862 167.6435645 2.224386886 0.142448 97 33 21020 YMR079W spliced yes 40 1 18 34.194678 302.911197 168.5529375 2.226736326 0.027438 97 34 20401 YFR024C-A spliced yes 40 21 38 46.419666 312.686672 179.553169 2.254193075 -0.000391 97 35 4643 snR3 snR3 yes 395 131 145 34.033591 285.898739 159.966165 2.204028133 0.158844 97 36 14148 MT_COB intronic no 7308 6406 6425 29.842749 291.803672 160.8232105 2.206348728 -0.016839 97 37 1827 Leu8 LeuTAG_i 3_flank no 301 33.726111 269.124565 151.425338 2.180198552 0.26069 97 38 21162 YNL301C spliced yes 40 21 35 45.629814 286.854564 166.242189 2.220741249 0.232455 97 39 18609 YNL069C intron no 549 341 356 87.451773 355.81627 221.6340215 2.345636427 -0.067345 97 40 1634 Leu5 LeuCAA_v tRNA/intron no 315 35 i16 31.262019 327.515973 179.388996 2.253795799 -0.202693 97 41 2434 Phe5 PheGAA_v 5_flank no 291 33.200826 354.709298 193.955062 2.287701119 -0.391499 97 42 16260 YDR424C intron no 196 61 80 31.234339 288.738271 159.986305 2.204082808 0.051023 97 43 13975 MT_COB bi3/intron no 7308 3811 3830 31.321765 295.399469 163.360617 2.213147365 0.011948 97 44 17393 YIL069C intron no 509 201 221 31.467385 352.437912 191.9526485 2.283194109 -0.381223 97 45 1344 Ile3 IleTAT_ii tRNA yes 333 41 53 39.733364 269.924441 154.8289025 2.189852035 0.374536 97 46 5539 snR33 5_flank/snR33 no 383 31.893106 346.466367 189.1797365 2.276874616 -0.333427 97 47 9282 RUF1 5_flank/RUF1 no 750 30.099112 288.599841 159.3494765 2.202350641 0.011153 97 48 21691 copy of SH10451 no 1151 32.379493 309.981174 171.1803335 2.233453868 -0.052165 97 49 18030 YLR316C exon/intron no 168 41 58 32.573065 292.652096 162.6125805 2.211154142 0.070057 97 50 17036 YGR183C intron no 313 161 175 34.769493 285.988988 160.3792405 2.205148152 0.176409 97 51 12454 5S rRNA NTS2 no 1420 1226 1242 34.789806 306.329365 170.5595855 2.231876132 0.006851 97 52 1777 Leu8 LeuTAG_i 5_flank no 301 34.700314 286.895085 160.7976995 2.206279831 0.167766 97 53 3002 Ser2 SerAGA_ii 5_flank no 282 30.390111 289.031249 159.71068 2.203333959 0.020543 97 54 7176 snR64 5_flank no 301 38.367118 279.630132 158.998625 2.201393369 0.272746 97 55 20181 YDL191W spliced yes 40 1 18 33.986613 300.976338 167.4814755 2.223966778 0.040747 97 56 17976 YLR211C exon/intron no 159 41 58 37.758223 327.230013 182.494118 2.261248871 -0.154453 97 57 17326 YIL004C intron no 231 141 157 29.495279 291.156936 160.3261075 2.205004249 -0.032082 97 58 17240 YHR079C intron no 186 81 100 35.333954 319.237881 177.2859175 2.248674239 -0.091423 97 59 18289 YML067C 3_exon no 193 161 178 37.230745 322.100322 179.6655335 2.254464771 -0.11159 97 60 6534 snR46 snR46 yes 397 161 178 37.203725 304.564182 170.8839535 2.232701283 0.04476 97 61 14235 MT_Ser 5_flank no 290 1 13 41.232034 269.480488 155.356261 2.19132876 0.393934 97 62 9818 RUF4 3_flank no 988 29.341631 315.6883 172.5149655 2.236826776 -0.178549 97 63 12569 MT_15S 15S yes 1848 286 310 27.438325 304.059582 165.7489535 2.219450795 -0.202144 97 64 20585 YHR021C spliced yes 40 1 22 29.542863 315.844041 172.693452 2.237275871 -0.17232 97 65 2311 Phe2 PheGAA_ii 3_flank no 292 29.647891 300.809224 165.2285575 2.218085111 -0.078816 97 66 16986 YGR118W intron no 420 61 85 33.768699 316.069783 174.919241 2.242837584 -0.082842 97 67 1115 Gly4 GlyTCC tRNA yes 272 52 67 31.785448 272.109998 151.947723 2.181694196 0.174199 97 68 18541 YMR230W intron no 510 201 213 58.18344 296.211629 177.1975345 2.248457675 0.201021 97 69 7928 snoRNA cluster1 snR72 yes 1574 1436 1453 31.671494 289.627674 160.649584 2.205879605 0.059874 97 70 2284 Phe2 PheGAA_ii tRNA yes 292 16 28 57.764608 275.402621 166.5836145 2.221632281 0.388478 97 71 12390 5S rRNA NTS2 no 1420 906 922 71.613691 354.055557 212.834624 2.328042281 -0.162547 97 72 1001 Gly2 GlyCCC_ii 5_flank/tRNA no 272 43.161427 279.660661 161.411044 2.207933247 0.296671 97 73 17729 YKL156W intron no 450 161 177 48.956934 327.941337 188.4491355 2.275194149 -0.113062 97 74 7030 snR62 5_flank no 300 29.03189 292.149304 160.590597 2.205720113 -0.061217 97 75 8078 snoRNA cluster 2 snR61/3_flank no 739 626 645 29.007513 292.764163 160.885838 2.206517817 -0.065322 97 76 4705 snR4 snR4 yes 386 61 76 32.983687 290.24669 161.6151885 2.208482173 0.098334 97 77 19438 YPR187W 5_exon no 176 21 37 33.087305 296.19262 164.6399625 2.216535258 0.064273 97 78 17309 YHR203C intron no 369 161 175 39.231026 309.768229 174.4996275 2.241794504 0.002265 97 79 19680 SIR1 2.4 SIR1 2.4 yes 401 321 337 31.462166 298.995047 165.2286065 2.21808524 -0.005657 97 80 1964 Lys2 LysCTT_ii tRNA yes 273 21 35 31.66503 260.533312 146.099171 2.164647752 0.226194 97 81 10298 RUF7 RUF7 yes 700 101 121 30.819823 314.416396 172.6181095 2.237086356 -0.119791 97 82 3099 Ser4 SerGCT 5_flank no 301 29.8988 317.598129 173.7484645 2.239920975 -0.170011 97 83 21520 copy of SH3381 no 272 36.010354 284.834086 160.42222 2.205264522 0.200928 97 84 8446 snoRNA cluster 5 snR128 yes 586 396 410 56.37392 301.172626 178.773273 2.252302591 0.148649 97 85 15891 YDL082W intron no 465 361 380 29.819616 283.50643 156.663023 2.194966503 0.020369 97 86 14727 MT_Cys; His intergenic no 456 226 238 35.844467 273.201171 154.522819 2.188992622 0.296621 97 87 9489 RUF2 3_flank no 468 35.820725 323.32242 179.5715725 2.254237586 -0.125697 97 88 809 Glu1 GluCTC tRNA/3_flank no 272 50.028499 274.646828 162.3376635 2.210419291 0.364852 97 89 21584 copy of SH6041 no 586 27.707589 287.903122 157.8053555 2.198121738 -0.114264 97 90 3467 Trp1 TrpCCA 3_flank no 306 105.149146 340.275672 222.712409 2.347744416 0.146835 97 91 21128 YNL130C spliced yes 40 13 31 27.566593 283.622333 155.594463 2.191994138 -0.102243 97 92 7131 snR63 snR63 yes 455 161 175 49.556636 295.123598 172.340117 2.236386383 0.168269 97 93 6768 snR50 snR50 yes 290 16 32 973.957078 1656.808514 1315.382796 3.119052157 -0.375753 97 94 1962 Lys2 LysCTT_ii tRNA yes 273 11 23 55.285051 271.18835 163.2367005 2.212817808 0.418409 97 95 13515 MT_COX1 intronic no 13084 11926 11945 35.225267 331.872415 183.548841 2.263751647 -0.200154 97 96 8357 snoRNA cluster4 3_flank no 638 571 588 33.24022 296.517 164.87861 2.217164317 0.067072 97 97 21596 copy of SH6472 no 372 33.261345 272.103406 152.6823755 2.183788908 0.225933 97 98 2963 Ser1 SerAGA_i tRNA yes 283 e12 49 33.272637 258.656166 145.9644015 2.164246951 0.31277 97 99 12137 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7571 7588 43.237498 316.519749 179.8786235 2.254979556 -0.045151 97 100 13835 MT_COB bi2 no 7308 1711 1730 35.195693 324.494833 179.845263 2.254899003 -0.137417 97 101 4569 U3b (snR17b) U3b yes 662 401 417 31.140427 297.533388 164.3369075 2.21573511 -0.007367 97 102 2452 Phe5 PheGAA_v tRNA/intron no 291 31 i11 31.05186 307.481384 169.266622 2.228571327 -0.070894 97 103 21312 YPL241C spliced yes 40 17 31 34.94012 297.527651 166.2338855 2.220719556 0.080685 97 104 15380 YBL027W intron no 484 361 381 32.879217 326.738951 179.809084 2.254811629 -0.175939 98 2 10064 RUF6 RUF6 yes 1251 166 185 33.135102 344.146762 188.640932 2.275635933 -0.307214 98 3 15098 MT_COX 2; ORF1 ORF2exon2 yes 2427 2071 2090 30.997181 321.748501 176.372841 2.246431711 -0.162308 98 4 20034 YBR186W spliced yes 40 1 19 30.781867 308.933095 169.857481 2.230084679 -0.088686 98 5 18931 YOL121C intron no 490 281 296 1538.220058 3841.028249 2689.624154 3.429691596 -1.111971 98 6 20663 YIL052C spliced yes 40 13 29 81.187888 310.27437 195.731129 2.291659901 0.215144 98 7 2606 Pro3 ProTGG_ii 5_flank no 303 33.514025 330.066415 181.79022 2.259570515 -0.193061 98 8 15134 MT_Phe 3_flank no 265 196 224 29.354901 312.914212 171.1345565 2.233337714 -0.161826 98 9 19068 YOR293W intron no 537 121 135 53.189346 337.795443 195.4923945 2.291129866 -0.165671 98 10 20171 YDL137W spliced yes 40 5 22 67.652573 344.045764 205.8491685 2.313549117 -0.120607 98 11 9543 RUF3 RUF3 yes 631 101 117 45.256535 280.222378 162.7394565 2.211492861 0.295449 98 12 15192 MT_COX3 cox3 no 1010 301 318 30.580266 309.849048 170.214657 2.230996954 -0.100998 98 13 21583 copy of SH5872 no 740 36.187011 270.211012 153.1990115 2.185255963 0.326815 98 14 6893 snR56 3_flank no 288 29.009221 268.682758 148.8459895 2.172737138 0.049071 98 15 17914 YLR061W intron no 489 341 358 31.113531 311.102232 171.1078815 2.233270014 -0.090377 98 16 381 Asn1 AsnGTT 5_flank/tRNA no 274 38.992301 314.765803 176.879052 2.247676402 -0.04301 98 17 6236 snR42 5_flank no 551 29.954779 283.625682 156.7902305 2.195318999 0.026835 98 18 6489 snR46 5_flank no 397 30.368529 288.931959 159.650244 2.203169587 0.020434 98 19 10288 RUF7 RUF7 yes 700 51 72 26.871281 314.995525 170.933403 2.232826939 -0.281643 98 20 5289 snR30 snR30 yes 801 296 311 47.046569 314.190924 180.6187465 2.256762824 -0.009765 98 21 16147 YDR092W intron no 368 221 237 47.534758 296.799126 172.166942 2.235949766 0.144799 98 22 6206 snR40 snR40/3_flank no 297 29.724916 270.02413 149.874523 2.175727814 0.080307 98 23 3946 RNase MRP RNaseMRP yes 540 146 163 33.977033 303.582549 168.779791 2.227320445 0.019323 98 24 6371 snR43 snR43 yes 409 96 113 30.051046 298.243368 164.147207 2.215233498 -0.04894 98 25 6805 snR52 5_flank no 292 53.755646 346.441809 200.0987275 2.301244327 -0.227181 98 26 11879 "rRNA(18S,5.8S,25S)" 25S yes 7956 6281 6298 445.529134 2133.037868 1289.283501 3.110348425 -1.780195 98 27 10960 "rRNA(18S,5.8S,25S)" 18S yes 7956 1686 1706 25501.60052 21550.55841 23526.07946 4.37154956 -0.532826 98 28 10405 RUF8 5_flank no 1151 38.299165 315.579519 176.939342 2.247824408 -0.051861 98 29 19192 YPL081W 5_exon no 601 1 19 40.296867 294.637147 167.467007 2.223929259 0.14464 98 30 8272 snoRNA cluster4 snR67 yes 638 146 165 34.112969 326.008465 180.060717 2.255418975 -0.155155 98 31 13060 MT_COX1 ai2/intronic no 13084 5101 5122 30.004966 310.206145 170.1055555 2.230718498 -0.12295 98 32 15092 MT_COX 2; ORF1 orf1/intronic no 2427 1981 1993 36.091819 268.888708 152.4902635 2.183242115 0.333097 98 33 18979 YOR096W intron no 501 261 277 50.371278 327.363217 188.8672475 2.276156651 -0.100619 98 34 12130 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7536 7552 29.916053 286.548051 158.232052 2.19929446 0.011175 98 35 9599 RUF3 RUF3 yes 631 381 400 29.853021 335.11277 182.4828955 2.261222163 -0.278457 98 36 12152 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7646 7664 40.899893 293.252106 167.0759995 2.222914068 0.159162 98 37 16885 YGL189C intron no 269 121 135 81.2857 330.203166 205.744433 2.313328093 0.066714 98 38 5544 snR33 snR33 yes 383 6 22 53.715362 293.585493 173.6504275 2.239675857 0.201854 98 39 11262 "rRNA(18S,5.8S,25S)" 5.8S/ITS2 no 7956 3196 3213 43.457647 286.90867 165.1831585 2.217965766 0.225803 98 40 2647 Pro4 ProTGG_iii 5_flank no 302 31.35604 330.011599 180.6838195 2.256919263 -0.220209 98 41 10338 RUF7 RUF7 yes 700 301 320 29.347493 422.76107 226.0542815 2.354212737 -0.893149 98 42 15032 MT_COX 2; ORF1 ORF1exon1 yes 2427 1081 1105 27.387388 369.276984 198.332186 2.297393199 -0.554066 98 43 17691 YKL006W intron no 498 321 338 33.455569 299.707777 166.581673 2.221627219 0.044665 98 44 4605 snR3 5_flank no 395 39.6203 280.137941 159.8791205 2.203791751 0.281571 98 45 14273 MT_VAR1 VAR1 yes 1467 301 329 29.711701 351.834672 190.7731865 2.280517334 -0.400761 98 46 14291 MT_VAR1 VAR1 yes 1467 571 595 29.892013 315.060139 172.476076 2.236728863 -0.155476 98 47 1492 Leu3 LeuCAA_iii 5_flank no 314 32.136883 279.645705 155.891294 2.192821862 0.139681 98 48 2971 Ser1 SerAGA_i 3_flank no 283 40.598026 334.675809 187.6369175 2.27331829 -0.207116 98 49 21181 YOL047C spliced yes 40 1 17 32.540547 292.325279 162.432913 2.210674033 0.071071 98 50 7209 snR64 3_flank no 301 31.627242 314.918097 173.2726695 2.238730066 -0.100947 98 51 17336 YIL018W intron no 500 121 140 32.706727 313.959911 173.333319 2.238882053 -0.07952 98 52 2368 Phe3 PheGAA_iii 3_flank no 291 32.659207 291.659071 162.159139 2.20994143 0.079073 98 53 19757 Negative Control no 60 NA #VALUE! 34.602342 297.659133 166.1307375 2.220449993 0.075571 98 54 12999 MT_COX1 ai2 no 13084 4186 4206 30.29674 334.274414 182.285577 2.260752307 -0.266157 98 55 16076 YDR025W intron no 439 61 77 32.143646 298.412548 165.278097 2.218215304 0.02031 98 56 20083 YCR097W spliced yes 40 5 29 29.908563 304.610281 167.259422 2.223390592 -0.092794 98 57 2253 Phe1 PheGAA_i 3_flank no 292 31.755476 274.876513 153.3159945 2.185587464 0.158885 98 58 8862 LSR1 / U2 RNA U2 yes 1375 951 967 35.635621 293.248711 164.442166 2.216013189 0.124646 98 59 505 Asp2 AspGTC_ii 3_flank no 272 37.531786 305.061683 171.2967345 2.233749084 0.041001 98 60 6503 snR46 snR46 yes 397 6 20 29.450225 291.594831 160.522528 2.205535991 -0.036458 98 61 4931 snR9 snR9 yes 387 61 77 103.291649 336.62619 219.9589195 2.342341578 0.159514 98 62 8426 snoRNA cluster 5 intergenic no 586 296 315 29.402232 287.990134 158.696183 2.200566481 -0.022428 98 63 18895 YOL120C intron no 547 101 118 29.402056 316.054144 172.7281 2.237362996 -0.178533 98 64 18783 YNL301C 5_exon no 532 1 18 29.413969 277.781723 153.597846 2.186385125 0.026251 98 65 14030 MT_COB exon4 yes 7308 4636 4653 31.432533 305.940008 168.6862705 2.227079736 -0.048918 98 66 10081 RUF6 RUF6 yes 1251 251 270 43.495891 335.255688 189.3757895 2.277324456 -0.200341 98 67 18487 YMR194W intron no 563 101 118 29.452968 279.010548 154.231758 2.188173809 0.022432 98 68 7675 snoRNA cluster1 snR78/intergenic no 1574 171 192 31.425498 312.607008 172.016253 2.235569483 -0.088843 98 69 3159 Ser5 SerTGA 5_flank no 282 29.36808 294.15823 161.763155 2.208879609 -0.052453 98 70 15628 YBR181C intron no 452 341 358 29.281262 310.751557 170.0164095 2.23049084 -0.151679 98 71 11829 "rRNA(18S,5.8S,25S)" 25S yes 7956 6031 6048 21144.67748 11205.70159 16175.18954 4.208849378 0.324738 98 72 3892 RNaseP 3_flank no 569 52.909943 356.156535 204.533239 2.310763896 -0.302767 98 73 14495 MT_21S 21S_rRNA3 yes 4639 1636 1657 30.981872 316.558946 173.770409 2.239975823 -0.126819 98 74 1686 Leu6 LeuGAG 5_flank/tRNA no 282 42.778468 294.822735 168.8006015 2.22737399 0.148337 98 75 20075 YCR031C spliced yes 40 1 13 52.682195 306.899271 179.790733 2.254767303 0.080007 98 76 20754 YJR021C spliced yes 40 21 38 32.95134 308.569304 170.760322 2.232386965 -0.033634 98 77 4506 U3b (snR17b) U3b yes 662 86 103 35.038153 297.117835 166.077994 2.220312091 0.085251 98 78 18831 YNL302C intron no 651 441 457 31.235129 302.608594 166.9218615 2.222513219 -0.035338 98 79 11387 "rRNA(18S,5.8S,25S)" 25S yes 7956 3821 3841 23347.79762 27199.08185 25273.43974 4.402664354 -1.027435 98 80 17047 YGR214W intron no 555 81 98 35.628103 344.33721 189.9826565 2.278713956 -0.302136 98 81 9523 RUF3 RUF3 yes 631 1 18 32.753273 300.87516 166.8142165 2.22223306 0.024798 98 82 2834 Pro7 ProTGG_vi 5_flank no 303 33.827248 322.658424 178.242836 2.251012084 -0.133111 98 83 3569 Tyr2 TyrGTA_ii 3_flank no 289 31.781578 302.897903 167.3397405 2.223599091 -0.018987 98 84 17750 YKL157W intron no 483 141 158 41.807048 333.851613 187.8293305 2.273763411 -0.196173 98 85 1563 Leu4 LeuCAA_iv 5_flank/tRNA no 314 31.610936 290.465323 161.0381295 2.206928717 0.052558 98 86 18365 YMR079W exon/intron no 256 41 58 31.545351 319.304545 175.424948 2.244091356 -0.136206 98 87 20593 YHR039C-A spliced yes 40 9 24 47.621026 346.438891 197.0299585 2.294532266 -0.263891 98 88 12199 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7881 7899 33.525511 309.137158 171.3313345 2.233836798 -0.031025 98 89 16380 YER007C exon/intron no 203 41 60 27.507554 310.846925 169.1772395 2.228341934 -0.227626 98 90 14098 MT_COB bi4 no 7308 5656 5675 29.470309 310.912697 170.191503 2.230937874 -0.145914 98 91 13013 MT_COX1 ai2 no 13084 4396 4413 45.416796 297.48788 171.452338 2.234143412 0.13195 98 92 647 Gln2 GlnTTG_i tRNA yes 272 21 38 33.264674 305.679434 169.472054 2.229098093 -0.006461 98 93 9479 RUF2 RUF2 yes 468 236 254 31.162 302.110743 166.6363715 2.2217698 -0.034754 98 94 11508 "rRNA(18S,5.8S,25S)" 25S yes 7956 4426 4444 6003.883291 11559.36584 8781.624567 3.943574866 -1.263493 98 95 10733 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 551 568 33.027796 269.685078 151.356437 2.180000896 0.235012 98 96 12833 MT_COX1 ai1 no 13084 1696 1718 31.066615 319.478383 175.272499 2.243713779 -0.143883 98 97 18765 YNL246W 5_exon no 195 21 37 52.981108 338.652418 195.816763 2.291849867 -0.173394 98 98 15901 YDL083C intron no 532 101 117 41.091528 344.223557 192.6575425 2.284786016 -0.282552 98 99 16890 YGL189C 3_exon no 269 221 238 33.176342 306.997233 170.0867875 2.230670579 -0.018194 98 100 19318 YPL198W intron no 509 421 438 29.211972 294.287215 161.7495935 2.208843198 -0.061318 98 101 16501 YER117W intron no 571 201 217 39.146382 383.587799 211.3670905 2.325037369 -0.581731 98 102 3921 RNase MRP RNaseMRP yes 540 21 38 34.131084 326.447084 180.289084 2.255969432 -0.158258 98 103 4113 SRP SRP yes 875 456 468 41.111359 282.145024 161.6281915 2.208517114 0.267516 98 104 12546 MT_ORF6 + ORF7 (hypothetical) 3_flank no 664 586 614 31.072499 315.527804 173.3001515 2.238798942 -0.117762 99 2 15525 YBR048W intron no 611 461 478 31.348068 300.235785 165.7919265 2.219563378 -0.017075 99 3 21494 copy of SH2287 no 292 33.186291 314.95809 174.0721905 2.240729394 -0.081338 99 4 14202 MT_COB 3_flank no 7308 7216 7240 30.945402 289.227049 160.0862255 2.204353965 0.038204 99 5 7923 snoRNA cluster1 snR72 yes 1574 1411 1428 32.583713 305.871009 169.227361 2.228470582 -0.016574 99 6 19351 YPL249C intron no 337 161 177 39.911538 275.365002 157.63827 2.19766166 0.327072 99 7 9610 RUF3 3_flank no 631 31.753909 320.576857 176.165383 2.245920572 -0.143306 99 8 17395 YIL069C intron no 509 241 260 32.28369 326.582272 179.432981 2.253902272 -0.182322 99 9 4245 telomerase RNA telomerase yes 1501 261 277 51.503637 303.29207 177.3978535 2.248948361 0.105662 99 10 10147 RUF6 RUF6 yes 1251 581 598 39.988523 292.406875 166.197699 2.220625007 0.165169 99 11 1901 Lys1 LysCTT_i 5_flank no 272 37.9808 275.385649 156.6832245 2.195022501 0.306356 99 12 18710 YNL130C intron no 541 281 302 30.609249 338.860391 184.73482 2.266548762 -0.295582 99 13 676 Gln3 GlnTTG_ii 5_flank no 272 30.665653 279.125542 154.8955975 2.190039074 0.084576 99 14 6060 snR37 snR37 yes 586 216 235 28.95468 291.24623 160.100455 2.204392566 -0.061232 99 15 7393 snR68 3_flank no 336 58.976201 337.211434 198.0938175 2.296870921 -0.12582 99 16 14170 MT_COB intronic no 7308 6736 6760 27.53179 326.964841 177.2483155 2.248582117 -0.30965 99 17 21013 YML124C spliced yes 40 21 36 46.769528 303.241738 175.005633 2.243052028 0.083583 99 18 469 Asp2 AspGTC_ii 5_flank no 272 33.868541 293.401696 163.6351185 2.213876515 0.102298 99 19 19415 YPR132W 5_exon no 465 21 37 38.124886 296.47506 167.299973 2.223495871 0.122206 99 20 6593 snR47 snR47 yes 299 71 89 30.709189 309.232329 169.970759 2.230374214 -0.092936 99 21 21131 YNL130C spliced yes 40 25 39 62.736759 338.068288 200.4025235 2.301903186 -0.109008 99 22 10789 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 831 851 33.267986 327.901154 180.58457 2.256680639 -0.179846 99 23 885 Glu3 GluTTC_ii 5_flank no 272 81.916814 386.866171 234.3914925 2.369941844 -0.297869 99 24 4474 U3b (snR17b) 5_flank no 662 31.72391 280.332561 156.0282355 2.193203197 0.121658 99 25 994 Gly2 GlyCCC_ii 5_flank no 272 29.846861 308.532303 169.189582 2.228373617 -0.118505 99 26 6348 snR43 5_flank no 409 30.942004 281.487363 156.2146835 2.193721853 0.087295 99 27 21568 copy of SH5228 no 801 38.096445 323.432745 180.764595 2.257113372 -0.121026 99 28 19582 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 341 358 33.99996 305.291825 169.6458925 2.229543349 0.005727 99 29 18307 YML073C intron no 515 341 355 58.473888 301.451119 179.9625035 2.255182026 0.15711 99 30 1118 Gly4 GlyTCC tRNA/3_flank no 272 31.875032 292.172043 162.0235375 2.20957811 0.050459 99 31 7467 snR71 5_flank no 290 29.808915 338.341674 184.0752945 2.264995504 -0.302767 99 32 21198 YOL121C spliced yes 40 17 32 48.039262 294.025463 171.0323625 2.233078295 0.172057 99 33 20081 YCR031C spliced yes 40 25 40 45.964821 299.158511 172.561666 2.236944325 0.118297 99 34 8298 snoRNA cluster4 intergenic no 638 276 295 29.727072 299.033487 164.3802795 2.215849715 -0.06513 99 35 8845 LSR1 / U2 RNA U2 yes 1375 866 883 31.705674 298.569359 165.1375165 2.217845749 0.005017 99 36 17735 YKL156W intron no 450 281 297 33.663424 296.522801 165.0931125 2.217728955 0.073633 99 37 14797 MT_Lys; Arg1; Gly tRNALys yes 682 136 151 48.725865 282.002198 165.3640315 2.218441052 0.288601 99 38 16996 YGR118W intron no 420 261 279 33.515162 302.045564 167.780363 2.22474113 0.0262 99 39 540 Cys1 CysGCA tRNA yes 272 1 13 53.592034 309.091809 181.3419215 2.258498213 0.066444 99 40 7822 snoRNA cluster1 intergenic no 1574 906 922 35.447862 270.443307 152.9455845 2.184536944 0.303683 99 41 8333 snoRNA cluster4 snR53 yes 638 451 467 46.52836 356.177773 201.3530665 2.303958248 -0.342545 99 42 18168 YLR448W intron no 484 141 155 73.012832 304.718891 188.8658615 2.276153464 0.210714 99 43 3619 Val1 ValAAC_i 3_flank no 274 29.572178 278.328665 153.9504215 2.187380882 0.031966 99 44 8663 LSR1 / U2 RNA 5_flank no 1375 33.68755 315.593519 174.6405345 2.242145052 -0.080111 99 45 4748 snR5 5_flank no 404 70.497726 310.533006 190.515366 2.279930009 0.149407 99 46 4201 telomerase RNA telomerase yes 1501 41 55 44.164905 298.614786 171.3898455 2.233985087 0.117598 99 47 5005 snR10 snR10 yes 445 56 68 54.694614 269.792907 162.2437605 2.210168004 0.429391 99 48 21172 YNL312W spliced yes 40 13 29 59.155044 313.161317 186.1581805 2.269882126 0.062347 99 49 20474 YGL189C spliced yes 40 5 23 34.533612 293.586332 164.059972 2.215002633 0.108796 99 50 18953 YOL127W intron no 514 241 257 32.582727 300.075248 166.3289875 2.220967944 0.024248 99 51 1513 Leu3 LeuCAA_iii tRNA/intron no 314 35 i13 33.667905 311.486987 172.577446 2.236984038 -0.047984 99 52 13934 MT_COB bi3 no 7308 3196 3215 32.607475 348.216438 190.4119565 2.279694215 -0.341527 99 53 3754 Val4 ValTAC 5_flank/tRNA no 274 148.599366 343.809217 246.2042915 2.391295619 0.367517 99 54 17284 YHR141C intron no 541 201 222 30.336838 291.849109 161.0929735 2.207076598 0.000848 99 55 8795 LSR1 / U2 RNA U2 yes 1375 616 635 32.242441 308.31263 170.2775355 2.231157356 -0.040583 99 56 6325 snR42 3_flank no 551 32.084925 292.099557 162.092241 2.209762227 0.057769 99 57 4309 telomerase RNA telomerase yes 1501 581 599 46.19482 339.615101 192.9049605 2.285343396 -0.21966 99 58 15056 MT_COX 2; ORF1 ORF1exon1 yes 2427 1441 1463 27.769686 336.211789 181.9907375 2.260049285 -0.352014 99 59 8798 LSR1 / U2 RNA U2 yes 1375 631 647 29.685066 297.80225 163.743658 2.214164488 -0.05901 99 60 17778 YKL180W intron no 406 221 238 31.600123 294.741239 163.170681 2.212642126 0.025294 99 61 21655 copy of SH8990 no 690 55.679833 327.722464 191.7011485 2.282624715 -0.073725 99 62 2226 Phe1 PheGAA_i tRNA yes 292 6 20 40.41241 279.925315 160.1688625 2.204578091 0.288019 99 63 6252 snR42 snR42 yes 551 41 55 143.133565 379.956283 261.544924 2.417546296 0.1273 99 64 15491 YBL092W intron no 433 201 218 31.220822 295.066089 163.1434555 2.212569657 0.010656 99 65 2824 Pro7 ProTGG_vi 5_flank no 303 29.182948 313.306536 171.244742 2.233617246 -0.170267 99 66 11970 "rRNA(18S,5.8S,25S)" 25S yes 7956 6736 6756 329.656165 1324.311761 826.983963 2.917497088 -1.349427 99 67 4662 snR3 3_flank no 395 31.133134 285.091658 158.112396 2.19896592 0.071035 99 68 14610 MT_21S Sce1 no 4639 3361 3380 35.09972 334.045337 184.5725285 2.266167062 -0.218715 99 69 19197 YPL081W intron no 601 101 120 29.144481 298.639365 163.891923 2.214557551 -0.084461 99 70 7112 snR63 snR63 yes 455 66 83 33.077383 289.951117 161.51425 2.208210845 0.103172 99 71 18036 YLR333C 5_exon no 523 1 20 36.99222 313.919163 175.4556915 2.244167461 -0.040292 99 72 6900 snR56 3_flank no 288 29.03153 314.773827 171.9026785 2.235282644 -0.184302 99 73 10417 RUF8 RUF8 yes 1151 11 28 36.869616 316.473542 176.671579 2.247166691 -0.063239 99 74 13656 MT_ATP6 ATP6 yes 980 646 665 28.951176 317.245008 173.098092 2.238292281 -0.201594 99 75 11917 "rRNA(18S,5.8S,25S)" 25S yes 7956 6471 6487 97.781154 371.283296 234.532225 2.370202524 -0.095414 99 76 19408 YPR098C intron no 196 61 82 30.941206 334.384381 182.6627935 2.261650095 -0.258255 99 77 5798 snR35 snR35 yes 740 176 200 31.02711 320.635472 175.831291 2.245096165 -0.153345 99 78 4799 snR5 snR5 yes 404 166 183 29.184023 290.266376 159.7251995 2.203373439 -0.044486 99 79 6871 snR56 5_flank/snR56 no 288 33.324894 298.970498 166.147696 2.220494323 0.049131 99 80 7916 snoRNA cluster1 intergenic/snR72 no 1574 1376 1392 55.642992 315.849735 185.7463635 2.26892032 0.021601 99 81 3761 Val4 ValTAC tRNA yes 274 30 42 31.599066 260.650692 146.124879 2.164724165 0.222354 99 82 2133 Met1 MetCAT_i tRNA yes 273 51 65 31.622425 277.18076 154.4015925 2.188651775 0.13913 99 83 17469 YIL148W 3_exon no 534 481 498 29.555547 309.107754 169.3316505 2.228738142 -0.132178 99 84 20428 YGL033W spliced yes 40 9 23 40.468266 282.504904 161.486585 2.20813645 0.262515 99 85 13778 MT_COB intronic no 7308 856 875 29.33951 300.436966 164.888238 2.217189677 -0.087454 99 86 4379 telomerase RNA telomerase yes 1501 931 943 123.32309 372.082544 247.702817 2.393930946 0.059397 99 87 21335 YPR063C spliced yes 40 9 25 31.22508 284.696756 157.960918 2.198549649 0.076666 99 88 4648 snR3 snR3 yes 395 156 172 39.197012 290.566187 164.8815995 2.217172192 0.180988 99 89 8073 snoRNA cluster 2 snR61 yes 739 601 619 37.210102 311.216075 174.2130885 2.24108078 -0.015593 99 90 15606 YBR119W intron no 189 81 101 27.24117 266.554074 146.897622 2.167014765 -0.050777 99 91 7583 snR189 5_flank/snR189 no 389 30.139839 346.076443 188.108141 2.274407591 -0.354056 99 92 14501 MT_21S 21S_rRNA3 yes 4639 1726 1743 405.14058 593.048778 499.094679 2.69818294 0.27465 99 93 10798 "rRNA(18S,5.8S,25S)" 5_ETS/18S no 7956 876 897 28.937327 271.87887 150.4080985 2.177271221 0.029468 99 94 14908 MT_Tyr 5_flank no 284 16 40 30.821264 316.419075 173.6201695 2.239600176 -0.131433 99 95 9018 snR17a / U3a U3a yes 690 376 394 30.796625 281.18344 155.9900325 2.193096849 0.081416 99 96 1824 Leu8 LeuTAG_i 3_flank no 301 30.830892 280.980921 155.9059065 2.192862569 0.084103 99 97 8452 snoRNA cluster 5 snR128 yes 586 426 442 31.891454 275.560086 153.72577 2.186746677 0.158773 99 98 20330 YER074W spliced yes 40 13 28 32.976848 312.685872 172.83136 2.237622547 -0.066065 99 99 19684 Negative Control no 60 NA #VALUE! 44.986449 277.688933 161.337691 2.207735837 0.320222 99 100 16893 YGL226C 5_exon no 249 21 39 29.176522 265.848613 147.5125675 2.168829022 0.072127 99 101 3172 Ser5 SerTGA 5_flank no 282 30.204681 355.850679 193.02768 2.285619591 -0.421996 99 102 1062 Gly3 GlyGCC tRNA yes 271 49 61 47.247551 257.40646 152.3270055 2.182776905 0.536617 99 103 9156 snR7 U5 RNA U5 yes 415 51 65 41.272388 268.817853 155.0451205 2.190458103 0.400424 99 104 13439 MT_COX1 intronic no 13084 10786 10808 32.243004 326.924036 179.58352 2.25426648 -0.185429 100 2 13557 MT_COX1 exon6 yes 13084 12556 12574 31.441473 277.758656 154.6000645 2.189209671 0.129303 100 3 4086 SRP SRP yes 875 321 335 76.437687 332.262304 204.3499955 2.310374632 0.021567 100 4 14686 MT_21S 21S_rRNA4 yes 4639 4501 4523 31.017122 288.107992 159.562557 2.202930987 0.047759 100 5 5031 snR10 snR10 yes 445 186 202 32.665179 279.412079 156.038629 2.193232126 0.158246 100 6 7907 snoRNA cluster1 intergenic no 1574 1331 1353 28.414919 301.245581 164.83025 2.217036917 -0.135421 100 7 16353 YDR500C intron no 439 341 360 30.914197 302.568667 166.741432 2.222043527 -0.045879 100 8 20627 YHR123W spliced yes 40 1 22 29.592114 327.392991 178.4925525 2.2516201 -0.236702 100 9 5686 snR34 snR34 yes 750 351 363 36.737548 258.972357 147.8549525 2.169835876 0.420798 100 10 17728 YKL156W intron no 450 141 158 32.742983 314.394564 173.5687735 2.239471595 -0.08248 100 11 6309 snR42 snR42 yes 551 326 340 52.922311 330.754751 191.838531 2.28293584 -0.112639 100 12 18476 YMR143W intron no 644 521 539 36.193435 305.972901 171.083168 2.233207284 0.026106 100 13 6165 snR39B 3_flank no 296 35.282208 291.537523 163.4098655 2.213278273 0.134982 100 14 16512 YER117W intron no 571 421 438 35.363361 308.510757 171.937059 2.235369494 -0.003914 100 15 19012 YOR182C intron no 511 121 138 75.634316 418.377522 247.005919 2.39270736 -0.524697 100 16 13153 MT_COX1 intronic no 13084 6496 6520 29.229486 348.916207 189.0728465 2.276629163 -0.386951 100 17 18059 YLR333C intron/exon no 523 461 477 36.974242 311.091863 174.0330525 2.240631738 -0.015058 100 18 2039 Lys3 LysTTT_i 3_flank no 296 33.520382 305.699455 169.6099185 2.229451245 -0.003453 100 19 13212 MT_COX1 ai4 no 13084 7381 7403 28.109957 313.549997 170.829977 2.232564082 -0.210815 100 20 7546 snR79 snR79/3_flank no 284 28.371205 295.995147 162.183176 2.210005801 -0.1144 100 21 12128 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7526 7544 28.630385 305.00972 166.8200525 2.222248254 -0.140815 100 22 6547 snR46 3_flank no 397 30.849875 283.614837 157.232356 2.196541922 0.071053 100 23 16078 YDR025W intron no 439 101 120 27.172282 303.563093 165.3676875 2.218450653 -0.215106 100 24 20119 YDL075W spliced yes 40 25 39 48.400061 307.693677 178.046869 2.250534341 0.052362 100 25 18772 YNL246W 3_exon no 195 161 177 39.635268 315.340422 177.487845 2.249168616 -0.046613 100 26 1619 Leu5 LeuCAA_v 5_flank no 315 29.707265 297.789392 163.7483285 2.214176876 -0.05815 100 27 12577 MT_15S 15S yes 1848 406 422 35.831183 283.406053 159.618618 2.203083546 0.211284 100 28 16516 YER117W intron/exon no 571 501 523 33.7973 304.929469 169.3633845 2.228819524 0.006187 100 29 90 Ala2 AlaTGC 3_flank no 273 31.719775 292.188585 161.95418 2.209392162 0.045256 100 30 18481 YMR143W 3_exon no 644 621 635 73.319933 330.366046 201.8429895 2.30501367 0.015035 100 31 14637 MT_21S Sce1 no 4639 3766 3787 29.562469 377.927233 203.744851 2.309086642 -0.579646 100 32 13053 MT_COX1 ai2 no 13084 4996 5018 29.508202 305.699909 167.6040555 2.224284523 -0.113441 100 33 2753 Pro5 ProTGG_iv 3_flank no 303 31.475933 300.162815 165.819374 2.219635271 -0.012377 100 34 8708 LSR1 / U2 RNA U2 yes 1375 181 197 35.466849 282.972608 159.2197285 2.201996879 0.210835 100 35 2868 Pro7 ProTGG_vi 3_flank no 303 31.456372 285.955691 158.7060315 2.200593432 0.076249 100 36 118 Arg1 ArgACG_i 5_flank no 273 31.454741 288.259241 159.856991 2.203731634 0.061422 100 37 20723 YJL177W spliced yes 40 1 13 76.825687 303.173592 189.9996395 2.278752777 0.244593 100 38 14364 MT_ORF9; ORF10 ORF9 yes 578 226 249 29.456345 296.247856 162.8521005 2.211793365 -0.057451 100 39 9343 RUF1 RUF1 yes 750 291 308 30.474395 317.349725 173.91206 2.240329699 -0.148658 100 40 12874 MT_COX1 ai1 no 13084 2311 2332 29.51115 324.078301 176.7947255 2.247469304 -0.220827 100 41 5714 snR34 snR34 yes 750 491 506 38.61432 350.836733 194.7255265 2.289422887 -0.343605 100 42 6368 snR43 snR43 yes 409 81 95 41.724535 288.854573 165.289554 2.218245408 0.203201 100 43 15479 YBL091C 3_exon no 188 141 158 35.742332 287.805727 161.7740295 2.208908803 0.172185 100 44 18195 YML024W intron no 498 201 220 31.777574 313.681417 172.7294955 2.237366505 -0.08926 100 45 1564 Leu4 LeuCAA_iv 5_flank/tRNA no 314 30.851061 314.61804 172.7345505 2.237379214 -0.119914 100 46 15867 YDL079C intron no 392 261 273 86.074972 368.604332 227.339652 2.356675191 -0.157656 100 47 12994 MT_COX1 ai2 no 13084 4111 4133 30.064059 293.69313 161.8785945 2.209189425 -0.020181 100 48 574 Gln1 GlnCTG 5_flank no 272 30.193713 304.706324 167.4500185 2.2238852 -0.083466 100 49 14275 MT_VAR1 VAR1 yes 1467 331 357 30.308522 358.446968 194.377745 2.28864654 -0.438541 100 50 1438 Leu2 LeuCAA_ii 5_flank no 314 30.38806 315.001396 172.694728 2.23727908 -0.137946 100 51 11616 "rRNA(18S,5.8S,25S)" 25S yes 7956 4966 4983 2980.862109 4490.531582 3735.696846 3.572371626 -0.543292 100 52 10889 "rRNA(18S,5.8S,25S)" 18S yes 7956 1331 1348 197.155442 385.118328 291.136885 2.464097231 0.366457 100 53 5596 snR34 5_flank no 750 32.420417 284.126822 158.2736195 2.199408534 0.119584 100 54 16857 YGL187C 5_exon no 442 1 20 30.285363 320.119824 175.2025935 2.243540531 -0.171157 100 55 4011 SRP 5_flank no 875 32.243207 295.705641 163.974424 2.214776114 0.040317 100 56 9015 snR17a / U3a U3a yes 690 361 379 30.096304 290.525961 160.3111325 2.204963682 0.000901 100 57 3908 RNase MRP 5_flank no 540 46.33323 278.421619 162.3774245 2.210525649 0.316481 100 58 4370 telomerase RNA telomerase yes 1501 886 903 33.956589 294.014232 163.9854105 2.214805211 0.098219 100 59 9037 snR17a / U3a U3a yes 690 471 486 80.677398 312.300245 196.4888215 2.293337848 0.196463 100 60 18523 YMR225C intron no 247 81 96 52.950719 291.388267 172.169493 2.235956201 0.218163 100 61 5311 snR30 snR30 yes 801 406 422 29.530233 292.720794 161.1255135 2.207164314 -0.037375 100 62 6093 snR37 snR37/3_flank no 586 29.365889 317.692634 173.5292615 2.239372719 -0.189338 100 63 12938 MT_COX1 ai2 no 13084 3271 3292 29.196283 334.715859 181.956071 2.25996655 -0.291492 100 64 735 Gln4 GlnTTG_iii 5_flank no 272 38.933718 328.365109 183.6494135 2.263989546 -0.160861 100 65 15324 YAL003W intron no 466 281 300 30.911448 313.003886 171.957667 2.235421544 -0.108401 100 66 1456 Leu2 LeuCAA_ii tRNA-intron no 314 i13 i27 42.686725 290.014429 166.350577 2.221024312 0.194086 100 67 17638 YJR145C 5_exon no 356 1 17 102.528038 359.191725 230.8598815 2.363348468 0.00933 100 68 7625 snR189 3_flank no 389 30.924975 289.064661 159.994818 2.204105917 0.038548 100 69 7959 snoRNA cluster 2 5_flank no 739 31 49 32.957048 296.229709 164.5933785 2.21641236 0.059923 100 70 20447 YGL103W spliced yes 40 13 25 64.846913 296.762003 180.804458 2.257209134 0.231137 100 71 10844 "rRNA(18S,5.8S,25S)" 18S yes 7956 1106 1126 175.0353 470.001277 322.5182885 2.508554346 -0.137291 100 72 17484 YJL024C exon/intron no 177 41 60 29.053161 306.807486 167.9303235 2.225129125 -0.136328 100 73 9350 RUF1 RUF1 yes 750 326 344 36.903295 303.300306 170.1018005 2.230708911 0.055638 100 74 16666 YFR032C intron no 431 201 215 34.86515 281.449207 158.1571785 2.199088909 0.212932 100 75 14633 MT_21S Sce1 no 4639 3706 3728 28.92406 291.742546 160.333303 2.205023739 -0.065144 100 76 12434 5S rRNA NTS2 no 1420 1126 1143 28.925306 309.185722 169.055514 2.228029341 -0.15515 100 77 21001 YML085C spliced yes 40 21 33 66.624212 315.328725 190.9764685 2.280979858 0.087921 100 78 2308 Phe2 PheGAA_ii 3_flank no 292 33.035566 293.131139 163.0833525 2.212409631 0.081768 100 79 5427 snR31 snR31 yes 425 201 217 33.189841 289.342723 161.266282 2.207543573 0.110583 100 80 7182 snR64 5_flank no 301 104.02226 394.870049 249.4461545 2.396976813 -0.190744 100 81 13500 MT_COX1 intronic no 13084 11701 11722 27.423234 331.800587 179.6119105 2.254335132 -0.340807 100 82 21901 copy of SH19201 no 601 31.400672 310.846548 171.12361 2.233309933 -0.07927 100 83 20126 YDL082W spliced yes 40 1 15 80.387831 324.612388 202.5001095 2.306425262 0.101959 100 84 7427 snR69 snR69 yes 301 36 52 109.310172 362.28584 235.798006 2.372540128 0.032489 100 85 12112 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7446 7463 576.289085 744.230725 660.259905 2.819714925 0.292372 100 86 10092 RUF6 RUF6 yes 1251 306 325 28.972082 309.472833 169.2224575 2.228457998 -0.155172 100 87 20978 YML056C spliced yes 40 5 19 43.733996 302.797519 173.2657575 2.238712742 0.078047 100 88 10834 "rRNA(18S,5.8S,25S)" 18S yes 7956 1056 1076 30.919549 306.366759 168.643154 2.226968716 -0.068667 100 89 8128 snoRNA cluster 3; snR41 yes 743 151 169 30.926196 291.304898 161.115547 2.20713745 0.024376 100 90 17617 YJR021C intron/exon no 180 121 138 38.773378 302.466329 170.6198535 2.232029565 0.067845 100 91 18848 YNL312W intron no 208 141 157 32.769802 288.599368 160.684585 2.205974215 0.10202 100 92 13815 MT_COB bi2 no 7308 1411 1435 26.785999 304.540978 165.6634885 2.219226802 -0.241636 100 93 2591 Pro3 ProTGG_ii 5_flank no 303 28.621895 296.563963 162.592929 2.211101655 -0.103288 100 94 1776 Leu8 LeuTAG_i 5_flank no 301 30.486612 745.210545 387.8485785 2.588662204 -2.36085 100 95 21869 copy of SH18599 no 549 33.387481 345.589924 189.4887025 2.277583322 -0.318214 100 96 1936 Lys1 LysCTT_i 3_flank no 272 32.487525 291.778629 162.133077 2.209871625 0.072815 100 97 372 Asn1 AsnGTT 5_flank no 274 28.720935 329.526785 179.12386 2.253153439 -0.279865 100 98 2096 Lys4 LysTTT_ii 3_flank no 296 32.786021 286.915151 159.850586 2.203714233 0.113313 100 99 14924 MT_Tyr 3_flank no 284 256 282 27.042676 325.05411 176.048393 2.245632065 -0.317577 100 100 13059 MT_COX1 ai2 no 13084 5086 5103 49.014064 289.234475 169.1242695 2.228205934 0.219981 100 101 7027 snR62 5_flank no 300 59.254539 375.675516 217.4650275 2.337389424 -0.393074 100 102 9832 RUF5-1 5_flank no 975 78.415729 288.33476 183.3752445 2.263340706 0.376941 100 103 1871 Leu9 LeuTAG_ii tRNA/3_flank no 301 32.341121 291.91117 162.1261455 2.209853058 0.067262 100 104 18574 YNL044W 5_exon no 179 1 22 37.462942 335.695775 186.5793585 2.270863596 -0.226536 101 2 6137 snR39B snR39B yes 296 26 42 41.571571 336.735418 189.1534945 2.276814369 -0.220569 101 3 6096 snR37 3_flank no 586 41.271964 282.815662 162.043813 2.209632454 0.261239 101 4 19370 YPR028W 3_exon no 233 201 222 30.996223 386.443429 208.719826 2.319563704 -0.637189 101 5 16131 YDR064W intron no 639 541 561 30.710338 313.065757 171.8880475 2.235245678 -0.115581 101 6 20084 YCR097W spliced yes 40 9 31 30.384136 322.570992 176.477564 2.2466895 -0.181802 101 7 17714 YKL081W intron no 426 281 297 47.30935 286.796006 167.052678 2.222853442 0.238163 101 8 18538 YMR230W intron no 510 141 160 31.596402 327.885285 179.7408435 2.254646775 -0.201073 101 9 16756 YGL076C 3_exon no 559 541 557 36.91167 292.521823 164.7167465 2.216737755 0.145347 101 10 1374 Leu1 LeuCAA_i 5_flank no 315 31.047053 322.022201 176.534627 2.246829904 -0.163744 101 11 13111 MT_COX1 ai3 no 13084 5866 5888 32.729126 326.160692 179.444909 2.253931142 -0.173456 101 12 6221 snR40 3_flank no 297 31.700928 298.889512 165.29522 2.218260295 0.002888 101 13 15091 MT_COX 2; ORF1 ORF1exon1 yes 2427 1966 1978 34.415763 268.575148 151.4954555 2.180399605 0.285591 101 14 9221 snR6 / U6 RNA 5_flank no 312 27.065075 293.34887 160.2069725 2.204681413 -0.175672 101 15 5683 snR34 snR34 yes 750 336 352 43.750182 298.578924 171.164553 2.23341383 0.116584 101 16 11751 "rRNA(18S,5.8S,25S)" 25S yes 7956 5641 5658 11282.86951 18768.83515 15025.85233 4.176839116 -1.300753 101 17 19962 YBL059W spliced yes 40 5 22 34.848168 299.884564 167.366366 2.223668186 0.060094 101 18 10801 "rRNA(18S,5.8S,25S)" 18S yes 7956 891 908 2897.229207 4855.645967 3876.437587 3.588432796 -0.707825 101 19 4970 snR9 3_flank no 387 39.168921 304.571746 171.8703335 2.23520092 0.04939 101 20 14916 MT_Tyr tRNA yes 284 136 154 27.095964 291.669255 159.3826095 2.202440933 -0.166253 101 21 4104 SRP SRP yes 875 411 423 72.788726 334.704022 203.746374 2.309089889 -0.019797 101 22 11923 "rRNA(18S,5.8S,25S)" 25S yes 7956 6501 6514 57.761924 313.995273 185.8785985 2.269229389 0.047935 101 23 15001 MT_COX 2; ORF1 COX2 no 2427 616 635 26.866888 296.999286 161.933087 2.209335595 -0.20356 101 24 20747 YJL205C-A spliced yes 40 17 34 27.117806 305.203079 166.1604425 2.22052764 -0.225399 101 25 14715 MT_Cys; His 5_flank no 456 46 70 27.334445 328.858261 178.096353 2.250655026 -0.327793 101 26 7737 snoRNA cluster1 intergenic no 1574 481 498 29.485405 317.905047 173.695226 2.239787882 -0.186328 101 27 2677 Pro4 ProTGG_iii tRNA-intron no 302 i15 i29 146.288822 407.447989 276.8684055 2.4422734 -0.001122 101 28 886 Glu3 GluTTC_ii 5_flank no 272 69.99766 333.350692 201.674176 2.304650291 -0.028441 101 29 1004 Gly2 GlyCCC_ii tRNA yes 272 11 30 31.471363 307.215787 169.343575 2.228768724 -0.05529 101 30 6481 snR45 3_flank no 372 27.366485 312.334741 169.850613 2.230067119 -0.241973 101 31 16071 YDR005C 3_exon no 180 141 158 79.221806 412.713457 245.9676315 2.390877959 -0.465899 101 32 13671 MT_ATP6 ATP6 yes 980 871 895 29.153922 355.465803 192.3098625 2.284001557 -0.433983 101 33 8254 snoRNA cluster4 5_flank no 638 56 75 31.08308 307.442536 169.262808 2.228561541 -0.069612 101 34 2210 Phe1 PheGAA_i 5_flank no 292 40.992791 303.443848 172.2183195 2.236079347 0.063912 101 35 10387 RUF7 3_flank no 700 81.878374 343.367174 212.622774 2.32760978 -0.021038 101 36 18963 YOL127W intron no 514 441 460 29.205859 291.845159 160.525509 2.205544056 -0.050547 101 37 12550 MT_15S 5_flank no 1848 1 27 29.282879 291.831833 160.557356 2.205630208 -0.046394 101 38 19131 YPL075W intron no 851 141 159 29.368797 282.626998 155.9978975 2.193118745 0.000836 101 39 19748 Negative Control no 60 NA #VALUE! 45.522832 312.732543 179.1276875 2.253162719 -0.004798 101 40 15147 MT_Thr1 tRNA yes 272 136 154 29.561272 303.326107 166.4436895 2.221267334 -0.097212 101 41 18576 YNL044W exon/intron no 179 41 57 31.670984 321.777067 176.7240255 2.247295596 -0.153623 101 42 12374 5S rRNA NTS2 no 1420 826 842 54.090581 297.55946 175.8250205 2.245080677 0.168071 101 43 12231 5S rRNA NTS2 no 1420 111 127 33.855753 268.043675 150.949714 2.178832295 0.272106 101 44 924 Glu3 GluTTC_ii 3_flank no 272 29.860287 304.246035 167.053161 2.222854698 -0.092278 101 45 12407 5S rRNA NTS2 no 1420 991 1003 72.879019 300.401522 186.6402705 2.271005355 0.245137 101 46 3701 Val3 ValCAC 5_flank/tRNA no 273 29.973096 291.43368 160.703388 2.206025033 -0.009126 101 47 15925 YDL108W exon/intron no 181 41 57 32.086409 300.848752 166.4675805 2.221329667 0.003479 101 48 20200 YDR025W spliced yes 40 5 21 36.264943 288.540782 162.4028625 2.21059368 0.171892 101 49 13830 MT_COB bi2 no 7308 1636 1660 30.191903 296.681365 163.436634 2.213349409 -0.034389 101 50 3481 Tyr1 TyrGTA_i 5_flank no 289 30.232099 302.541969 166.387034 2.22111948 -0.069015 101 51 20672 YIL069C spliced yes 40 25 40 44.652638 293.86514 169.258889 2.228551486 0.163141 101 52 4717 snR4 snR4 yes 386 121 135 79.820023 368.935366 224.3776945 2.350979681 -0.203223 101 53 21137 YNL147W spliced yes 40 21 39 36.35791 305.065153 170.7115315 2.232262859 0.035326 101 54 555 Cys1 CysGCA 3_flank no 272 32.214363 292.752587 162.483475 2.210809199 0.057862 101 55 8168 snoRNA cluster 3; snR70 yes 743 351 363 54.780304 302.651776 178.71604 2.252163533 0.127457 101 56 8599 snR19 / U1 RNA U1 yes 868 491 508 30.077648 302.047463 166.0625555 2.220271717 -0.071351 101 57 2937 Ser1 SerAGA_i 5_flank no 283 30.019961 334.313551 182.166756 2.260469125 -0.270247 101 58 6951 snR58 3_flank no 296 29.947794 312.27446 171.111127 2.233278252 -0.137177 101 59 10667 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 221 239 31.87763 295.502335 163.6899825 2.214022102 0.029676 101 60 5735 snR34 3_flank no 750 29.718658 296.66178 163.190219 2.212694125 -0.050764 101 61 8016 snoRNA cluster 2 intergenic/snR55 no 739 316 335 31.548176 297.524771 164.5364735 2.216262185 0.00627 101 62 20987 YML067C spliced yes 40 13 29 33.315748 305.155447 169.2355975 2.228491719 -0.001586 101 63 3186 Ser5 SerTGA tRNA yes 282 e3 54 39.013828 277.617232 158.31553 2.199523519 0.297521 101 64 11247 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3121 3138 24826.5967 13426.38976 19126.49323 4.281635351 0.220446 101 65 1536 Leu3 LeuCAA_iii 3_flank no 314 52.377226 307.309532 179.843379 2.254894454 0.075055 101 66 18700 YNL130C intron no 541 81 101 30.698809 291.59321 161.1460095 2.207219555 0.014848 101 67 2052 Lys4 LysTTT_ii 5_flank no 296 35.638706 281.338448 158.488577 2.199997966 0.22715 101 68 11396 "rRNA(18S,5.8S,25S)" 25S yes 7956 3866 3883 34193.25475 13356.63102 23774.94289 4.376119482 0.620858 101 69 16776 YGL103W intron no 611 201 217 32.938411 296.593013 164.765712 2.216866839 0.057076 101 70 3043 Ser3 SerCGA 5_flank no 301 72.017174 329.997847 201.0075105 2.303212285 0.008987 101 71 18669 YNL112W intron no 1102 561 577 30.133561 286.699854 158.4167075 2.199800983 0.021726 101 72 18199 YML024W intron no 498 281 297 33.095244 293.046714 163.070979 2.212376679 0.084183 101 73 17021 YGR148C intron no 479 341 358 31.050356 294.439197 162.7447765 2.211507058 0.008855 101 74 11703 "rRNA(18S,5.8S,25S)" 25S yes 7956 5401 5414 44.790947 296.558111 170.674529 2.232168713 0.13856 101 75 13586 MT_COX1 3_flank no 13084 12991 13017 26.952212 318.550283 172.7512475 2.237421192 -0.291914 101 76 7163 snR63 3_flank no 455 28.876676 280.08082 154.478748 2.188868741 -0.01337 101 77 17777 YKL180W intron no 406 201 217 34.792788 287.883835 161.3383115 2.207737507 0.160366 101 78 7520 snR79 5_flank no 284 32.922361 310.999801 171.961081 2.235430167 -0.053388 101 79 8184 snoRNA cluster 3; snR70 yes 743 431 448 42.96418 315.873608 179.418894 2.253868175 -0.040449 101 80 8188 snoRNA cluster 3; snR70/intergenic no 743 451 468 32.172799 288.903835 160.538317 2.205578706 0.08088 101 81 10477 RUF8 RUF8 yes 1151 311 330 31.223408 294.582399 162.9029035 2.211928825 0.013764 101 82 2122 Met1 MetCAT_i 5_flank/tRNA no 273 29.194832 290.605882 159.900357 2.203849433 -0.045467 101 83 18809 YNL302C 5_exon no 651 1 18 38.963745 304.503461 171.733603 2.234855282 0.049537 101 84 20715 YJL041W spliced yes 40 17 36 34.818487 317.080705 175.949596 2.245388274 -0.078057 101 85 8550 snR19 / U1 RNA U1 yes 868 246 258 46.439147 310.034586 178.2368665 2.250997538 0.022197 101 86 20812 YKL186C spliced yes 40 17 34 44.338384 296.022737 170.1805605 2.23090995 0.14207 101 87 1144 His1 HisGTG 5_flank no 272 28.668264 309.884469 169.2763665 2.228596328 -0.168628 101 88 12142 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7596 7614 30.619447 296.928551 163.773999 2.214244954 -0.021239 101 89 21720 copy of SH11710 no 7956 2817.129321 2216.083851 2516.606586 3.400815329 0.544941 101 90 17875 YLR048W 5_exon no 459 21 37 34.459044 281.596372 158.027708 2.198733241 0.199735 101 91 16302 YDR450W intron no 535 321 335 38.226266 304.432849 171.3295575 2.233832293 0.04844 101 92 9402 RUF1 3_flank no 750 91.198926 310.742402 200.970664 2.303132667 0.271335 101 93 21527 copy of SH3562 no 289 39.809692 393.968461 216.8890765 2.33623768 -0.648093 101 94 20441 YGL087C spliced yes 40 13 32 34.904231 399.088198 216.9962145 2.336452158 -0.711455 101 95 976 Gly1 GlyCCC_i 3_flank no 272 35.878683 302.130238 169.0044605 2.227898167 0.053723 101 96 18954 YOL127W intron no 514 261 277 54.383663 322.956003 188.669833 2.275702465 -0.042788 101 97 4200 telomerase RNA telomerase yes 1501 36 52 43.988844 307.032148 175.510496 2.244303094 0.04078 101 98 21795 copy of SH14860 no 360 30.632544 274.789665 152.7111045 2.183870618 0.103745 101 99 11453 "rRNA(18S,5.8S,25S)" 25S yes 7956 4151 4168 38042.8007 10253.54787 24148.17428 4.382884302 1.190683 101 100 19334 YPL241C 5_exon no 180 1 20 31.05573 290.308273 160.6820015 2.205967233 0.03505 101 101 15209 MT_COX3 cox3 no 1010 556 573 33.205909 315.800736 174.5033225 2.2418037 -0.087696 101 102 4311 telomerase RNA telomerase yes 1501 591 610 37.352063 371.935009 204.643536 2.310998031 -0.508523 101 103 12724 MT_COX1 5_flank no 13084 61 89 31.426435 343.560778 187.4936065 2.272986463 -0.318718 101 104 2999 Ser2 SerAGA_ii 5_flank no 282 31.496568 280.901357 156.1989625 2.193678145 0.110416 102 2 9010 snR17a / U3a U3a yes 690 336 357 31.272047 327.380001 179.326024 2.253643319 -0.201534 102 3 6094 snR37 snR37/3_flank no 586 31.101266 297.5357 164.318483 2.215686417 -0.008696 102 4 1731 Leu7 LeuTAA 5_flank no 284 38.799488 360.519423 199.6594555 2.300289882 -0.417601 102 5 16545 YER133W intron no 625 61 76 36.50874 308.768642 172.638691 2.237138134 0.00473 102 6 11851 "rRNA(18S,5.8S,25S)" 25S yes 7956 6141 6156 38.110698 302.968458 170.539578 2.231825184 0.061636 102 7 9623 RUF3 3_flank no 631 30.073498 307.58499 168.829244 2.227447676 -0.104945 102 8 2960 Ser1 SerAGA_i tRNA yes 283 31 e14 31.686975 319.288068 175.4875215 2.24424624 -0.134224 102 9 20802 YKL180W spliced yes 40 1 13 62.639918 291.885524 177.262721 2.248617411 0.261007 102 10 5689 snR34 snR34 yes 750 366 382 73.551534 363.372744 218.462139 2.339376182 -0.211781 102 11 14405 MT_21S 21S_rRNA3 yes 4639 286 312 32.872339 299.516728 166.1945335 2.220616735 0.036918 102 12 18713 YNL130C intron no 541 341 355 197.547628 872.229932 534.88878 2.728263488 -1.207642 102 13 20545 YGR214W spliced yes 40 17 33 32.626178 273.716332 153.171255 2.185177271 0.194918 102 14 14502 MT_21S 21S_rRNA3 yes 4639 1741 1760 34.411161 322.561178 178.4861695 2.251604569 -0.125279 102 15 5498 snR32 snR32 yes 388 151 168 88.798166 407.131174 247.96467 2.394389807 -0.364065 102 16 16906 YGL232W exon/intron no 158 41 57 40.045682 336.724315 188.3849985 2.275046316 -0.225805 102 17 2429 Phe5 PheGAA_v 5_flank no 291 68.264319 331.876408 200.0703635 2.301182761 -0.028021 102 18 6161 snR39B 3_flank no 296 27.409856 293.873377 160.6416165 2.205858066 -0.158382 102 19 11181 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2791 2806 26.664625 277.869091 152.266858 2.182605386 -0.135014 102 20 10769 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 731 744 64.861422 322.560448 193.710935 2.287154137 0.020759 102 21 11165 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2711 2732 33.739959 297.668223 165.704091 2.219333231 0.065045 102 22 18353 YML124C 3_exon no 398 381 397 35.003526 297.607249 166.3053875 2.220906319 0.080775 102 23 20285 YDR471W spliced yes 40 9 25 38.260899 283.28016 160.7705295 2.206206442 0.239549 102 24 5307 snR30 snR30 yes 801 386 404 28.835039 298.52889 163.6819645 2.214000829 -0.100554 102 25 3733 Val3 ValCAC 3_flank no 273 29.082638 283.539313 156.3109755 2.193989473 -0.018669 102 26 14990 MT_COX 2; ORF1 COX2 no 2427 451 470 30.250901 297.694956 163.9729285 2.214772153 -0.038629 102 27 8688 LSR1 / U2 RNA U2 yes 1375 81 102 29.333204 276.27117 152.802187 2.18412957 0.02924 102 28 10456 RUF8 RUF8 yes 1151 206 223 31.292095 308.961406 170.1267505 2.230772607 -0.071688 102 29 8209 snoRNA cluster 3; snR51 yes 743 556 575 31.167514 299.288967 165.2282405 2.218084278 -0.017291 102 30 16981 YGR034W intron/exon no 454 401 417 32.964593 260.578838 146.7717155 2.16664237 0.288456 102 31 17722 YKL156W 5_exon no 450 21 38 34.73796 339.466481 187.1022205 2.272078942 -0.264641 102 32 58 Ala2 AlaTGC 5_flank no 273 32.62774 371.663647 202.1456935 2.305664494 -0.523547 102 33 3919 RNase MRP RNaseMRP yes 540 11 28 36.460446 339.044372 187.752409 2.273585518 -0.256746 102 34 21516 copy of SH3111 no 301 26.733262 292.292793 159.5130275 2.202796158 -0.190036 102 35 5166 snR13 5_flank/snR13 no 324 48.377945 300.159967 174.268956 2.241220029 0.117688 102 36 18026 YLR306W intron/exon no 234 181 198 30.861161 316.882192 173.8716765 2.240228842 -0.132775 102 37 12499 MT_tRNA Pro tRNA yes 272 136 152 34.991332 286.485133 160.7382325 2.206119188 0.174758 102 38 9436 RUF2 RUF2 yes 468 21 40 29.242598 239.906876 134.574737 2.12896354 0.192198 102 39 1510 Leu3 LeuCAA_iii tRNA yes 314 20:B 34 33.418165 287.545399 160.481782 2.205425738 0.129215 102 40 15522 YBR048W intron no 611 401 415 93.989318 330.807279 212.3982985 2.327151033 0.142471 102 41 6874 snR56 snR56 yes 288 1 23 32.760711 341.589286 187.1749985 2.272247838 -0.28741 102 42 18718 YNL130C intron no 541 441 463 29.842424 326.582563 178.2124935 2.250938147 -0.223343 102 43 11333 "rRNA(18S,5.8S,25S)" 25S yes 7956 3551 3569 30.928924 303.324722 167.126823 2.223046158 -0.049977 102 44 20559 YHR001W-A spliced yes 40 1 20 38.097377 341.370175 189.733776 2.27814465 -0.270495 102 45 7340 snR68 5_flank no 336 29.977713 325.148648 177.5631805 2.249352915 -0.210518 102 46 15683 YBR191W intron no 488 301 320 32.034702 328.01959 180.027146 2.255337997 -0.19638 102 47 6983 snR60 5_flank/snR60 no 304 38.187099 262.729507 150.458303 2.177416159 0.424868 102 48 16876 YGL187C intron/exon no 442 381 400 34.131915 321.081824 177.6068695 2.249459759 -0.117293 102 49 2252 Phe1 PheGAA_i 3_flank no 292 34.150602 269.170002 151.660302 2.180871916 0.273441 102 50 17593 YJL191W intron no 508 381 400 32.108026 301.26843 166.688228 2.22190493 0.001616 102 51 3570 Tyr2 TyrGTA_ii 3_flank no 289 34.135546 348.965505 191.5505255 2.282283348 -0.343349 102 52 19597 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 241 257 60.804636 313.256634 187.030635 2.271912748 0.071394 102 53 10050 RUF6 RUF6 yes 1251 96 112 44.334394 322.119729 183.2270615 2.262989617 -0.089688 102 54 17844 YKR094C intron no 468 321 343 30.025837 293.224998 161.6254175 2.20850966 -0.018572 102 55 19028 YOR182C intron no 511 441 461 30.028886 289.967485 159.9981855 2.204115057 0.001228 102 56 17366 YIL052C intron no 572 221 238 30.027123 308.918923 169.473023 2.229100576 -0.114524 102 57 19565 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 1 13 70.037755 280.744998 175.3913765 2.244008237 0.39891 102 58 4378 telomerase RNA telomerase yes 1501 926 940 56.559745 336.699415 196.62958 2.293648852 -0.13691 102 59 3036 Ser2 SerAGA_ii 3_flank no 282 35.982827 308.762014 172.3724205 2.23646778 0.001264 102 60 3904 RNase MRP 5_flank no 540 31.778123 334.497878 183.1380005 2.262778468 -0.248042 102 61 13238 MT_COX1 ai4 no 13084 7771 7793 29.57027 310.750847 170.1605585 2.230858902 -0.141419 102 62 4276 telomerase RNA telomerase yes 1501 416 431 46.33925 298.348386 172.343818 2.23639571 0.126891 102 63 20052 YBR220C spliced yes 40 1 15 40.987033 301.226046 171.1065395 2.233266608 0.084396 102 64 7142 snR63 snR63 yes 455 216 231 54.549688 286.31589 170.432789 2.231553151 0.271827 102 65 19402 YPR063C intron no 186 121 136 84.060509 335.360851 209.71068 2.321620548 0.048501 102 66 13536 MT_COX1 intronic no 13084 12241 12262 28.740653 306.800877 167.770765 2.224716285 -0.147581 102 67 19081 YOR293W intron no 537 381 393 64.300525 291.538531 177.919528 2.250223618 0.273019 102 68 2625 Pro3 ProTGG_ii tRNA yes 303 46 58 74.58188 319.85277 197.217325 2.294945064 0.100917 102 69 2344 Phe3 PheGAA_iii intron/tRNA no 291 i9 43 44.96979 314.06407 179.51693 2.254105413 -0.018192 102 70 6470 snR45 3_flank no 372 37.179178 283.482841 160.3310095 2.205017527 0.225906 102 71 10286 RUF7 RUF7 yes 700 41 58 33.265102 308.030052 170.647577 2.232100126 -0.025387 102 72 19632 RNA14 2.2 RNA14 2.2 yes 401 141 162 29.262442 340.468821 184.8656315 2.266856179 -0.325917 102 73 4147 SRP SRP yes 875 626 638 991.26924 1260.190072 1125.729656 3.051434107 0.083744 102 74 21362 Ile2_3 spliced yes 40 13 28 36.942064 282.775787 159.8589255 2.20373689 0.229428 102 75 9399 RUF1 3_flank no 750 32.85281 296.797048 164.824929 2.217022897 0.053092 102 76 18496 YMR194W intron no 563 281 298 44.578571 344.525717 194.552144 2.289036021 -0.266303 102 77 14246 MT_Ser tRNA yes 290 166 182 32.776691 274.499422 153.6380565 2.186498805 0.194464 102 78 21555 copy of SH4781 no 404 70.480894 339.945978 205.213436 2.312205792 -0.072752 102 79 215 Arg3 ArgCCG 5_flank no 272 29.016611 299.779911 164.398261 2.215897219 -0.096369 102 80 2556 Pro2 ProTGG_i tRNA yes 303 16 33 38.979618 287.641427 163.3105225 2.213014168 0.208747 102 81 17277 YHR141C intron no 541 61 78 40.974046 344.430711 192.7023785 2.284887075 -0.28461 102 82 13283 MT_COX1 exon5a yes 13084 8446 8463 29.021041 308.098201 168.559621 2.226753546 -0.145212 102 83 7365 snR68 snR68 yes 336 46 62 30.837624 293.14735 161.992487 2.209494873 0.009772 102 84 5993 snR36 3_flank no 555 36.517046 299.267622 167.892334 2.225030867 0.084552 102 85 6038 snR37 snR37 yes 586 106 120 59.799116 321.801829 190.8004725 2.280579446 -0.002607 102 86 16464 YER093C intron no 175 81 102 28.480483 313.39484 170.9376615 2.232837758 -0.196229 102 87 17377 YIL052C intron no 572 441 457 45.903558 316.568837 181.2361975 2.258244942 -0.03571 102 88 20415 YGL030W spliced yes 40 5 21 60.535463 330.509661 195.522562 2.291196879 -0.06575 102 89 21262 YPL079W spliced yes 40 17 34 43.920783 323.00353 183.4621565 2.263546494 -0.098539 102 90 21766 copy of SH13601 no 347 28.353636 293.328681 160.8411585 2.206397193 -0.103312 102 91 11041 "rRNA(18S,5.8S,25S)" 18S yes 7956 2091 2106 10284.50508 9734.876251 10009.69066 4.000420656 -0.321077 102 92 5317 snR30 snR30 yes 801 436 448 67.448417 276.996237 172.222327 2.236089453 0.419455 102 93 1113 Gly4 GlyTCC tRNA yes 272 41 54 335.615637 889.341475 612.478556 2.787090888 -0.646081 102 94 5430 snR31 snR31/3_flank no 425 33.54226 338.208416 185.875338 2.269221771 -0.257465 102 95 11693 "rRNA(18S,5.8S,25S)" 25S yes 7956 5351 5369 39.278751 292.994575 166.136663 2.220465483 0.157924 102 96 15763 YCR031C intron/exon no 407 341 360 30.882699 291.808559 161.345629 2.207757204 0.019725 102 97 5290 snR30 snR30 yes 801 301 317 34.002379 317.833005 175.917692 2.245309519 -0.093734 102 98 15785 YDL029W intron no 223 61 80 38.204073 340.807407 189.50574 2.277622369 -0.265571 102 99 13607 MT_ATP8/AAP1 AAP1/3_flank no 347 241 269 28.780297 304.255369 166.517833 2.221460751 -0.130802 102 100 8673 LSR1 / U2 RNA U2 yes 1375 6 22 30.006757 259.18197 144.5943635 2.160151364 0.149541 102 101 12760 MT_COX1 ai1 no 13084 601 618 44.177903 374.896193 209.537048 2.321260821 -0.490516 102 102 15125 MT_Phe 5_flank no 265 61 85 31.364698 337.850626 184.607662 2.266249722 -0.278112 102 103 16423 YER074W 5_exon no 566 21 38 35.526052 323.578713 179.5523825 2.254191172 -0.128665 102 104 15179 MT_COX3 cox3 no 1010 106 125 377.208321 429.399932 403.3041265 2.605632666 0.771601 103 2 4494 U3b (snR17b) U3b yes 662 26 45 31.052999 305.3911 168.2220495 2.22588292 -0.058297 103 3 9519 RUF3 5_flank no 631 34.861151 418.181205 226.521178 2.355108811 -0.838141 103 4 14812 MT_Lys; Arg1; Gly tRNAArg1 yes 682 361 380 32.673479 283.93669 158.3050845 2.199494864 0.128935 103 5 9980 RUF5-1 RUF5-1 yes 975 706 725 34.396056 346.120525 190.2582905 2.27934359 -0.319783 103 6 18949 YOL127W intron no 514 161 177 35.105408 303.085153 169.0952805 2.228131486 0.036903 103 7 1987 Lys2 LysCTT_ii 3_flank no 273 31.96269 264.653905 148.3082975 2.171165449 0.219836 103 8 16289 YDR450W intron no 535 61 78 31.722031 326.183413 178.952722 2.252738309 -0.186569 103 9 1394 Leu1 LeuCAA_i tRNA-intron no 315 i3 i19 37.159741 276.070212 156.6149765 2.19483329 0.291171 103 10 17977 YLR211C intron no 159 61 75 36.918218 285.427998 161.173108 2.207292581 0.20609 103 11 10665 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 211 229 34.834834 315.119971 174.9774025 2.242981965 -0.062533 103 12 2700 Pro4 ProTGG_iii 3_flank no 302 32.794707 315.061739 173.928223 2.24037006 -0.087065 103 13 7823 snoRNA cluster1 intergenic no 1574 911 930 32.643322 282.389041 157.5161815 2.197325175 0.138034 103 14 14079 MT_COB bi4 no 7308 5371 5393 27.024008 285.686017 156.3550125 2.194111809 -0.142784 103 15 499 Asp2 AspGTC_ii tRNA yes 272 57 69 41.689995 272.080951 156.885473 2.195582731 0.370278 103 16 12158 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7676 7693 95.904007 404.281165 250.092586 2.398100817 -0.298606 103 17 21654 copy of SH8989 no 690 116.225562 377.745085 246.9853235 2.392671147 -0.01665 103 18 20264 YDR424C spliced yes 40 1 18 34.681656 304.046996 169.364326 2.228821938 0.024044 103 19 16058 YDL219W exon/intron no 171 41 60 27.451942 268.359935 147.9059385 2.169985611 -0.044668 103 20 5011 snR10 snR10 yes 445 86 100 48.379916 330.896635 189.6382755 2.277925997 -0.139656 103 21 2674 Pro4 ProTGG_iii tRNA/intron no 302 37 i16 33.546317 292.117576 162.8319465 2.211739614 0.104166 103 22 8515 snR19 / U1 RNA U1 yes 868 71 93 30.015921 274.460276 152.2380985 2.182523351 0.073746 103 23 4780 snR5 snR5 yes 404 71 85 61.313658 334.882326 198.097992 2.296880073 -0.094423 103 24 18256 YML056C 5_exon no 508 1 18 46.194872 343.485205 194.8400385 2.289678207 -0.249571 103 25 10472 RUF8 RUF8 yes 1151 286 302 32.797095 293.361108 163.0791015 2.21239831 0.072759 103 26 20981 YML056C spliced yes 40 17 33 40.895535 323.474523 182.185029 2.260512686 -0.1127 103 27 11973 "rRNA(18S,5.8S,25S)" 25S yes 7956 6751 6768 11294.96387 21429.36903 16362.16645 4.213840806 -1.519931 103 28 4669 snR3 3_flank no 395 32.975546 278.007546 155.491546 2.191706782 0.177399 103 29 12332 5S rRNA NTS2 no 1420 616 635 32.791627 330.055354 181.4234905 2.258693518 -0.202001 103 30 14962 MT_COX 2; ORF1 5_flank no 2427 31 55 26.705747 295.196313 160.95103 2.20669376 -0.204798 103 31 18075 YLR344W intron no 547 261 277 36.166653 295.281272 165.7239625 2.219385309 0.1137 103 32 21498 copy of SH2291 no 292 300.804859 660.866455 480.835657 2.681996666 -0.250677 103 33 1668 Leu6 LeuGAG 5_flank no 282 30.105354 374.108797 202.1070755 2.305581518 -0.549215 103 34 130 Arg1 ArgACG_i tRNA yes 273 26 40 51.34397 282.142219 166.7430945 2.222047857 0.295716 103 35 4415 telomerase RNA telomerase yes 1501 1111 1127 34.141302 270.154146 152.147724 2.18226546 0.266437 103 36 2409 Phe4 PheGAA_iv 3_flank no 291 32.44859 280.426191 156.4373905 2.194340563 0.144629 103 37 11482 "rRNA(18S,5.8S,25S)" 25S yes 7956 4296 4309 399.162034 691.279355 545.2206945 2.736572332 -0.00946 103 38 122 Arg1 ArgACG_i 5_flank/tRNA5 no 273 32.054265 286.148957 159.101611 2.201674577 0.094666 103 39 17136 YHR010W intron no 661 441 453 59.436279 320.716342 190.0763105 2.278927993 0.003764 103 40 9856 RUF5-1 RUF5-1 yes 975 86 103 43.693068 261.344873 152.5189705 2.183323865 0.487049 103 41 8010 snoRNA cluster 2 intergenic no 739 286 307 27.761365 315.82924 171.7953025 2.235011284 -0.237181 103 42 14431 MT_21S 21S_rRNA3 yes 4639 676 692 966.084751 833.772823 899.928787 2.954208144 0.725542 103 43 831 Glu2 GluTTC_i 5_flank no 272 29.993418 290.837214 160.415316 2.205245831 -0.004646 103 44 20813 YKL186C spliced yes 40 21 40 36.140321 322.383188 179.2617545 2.253487643 -0.116757 103 45 7826 snoRNA cluster1 intergenic no 1574 926 947 32.057915 302.265603 167.161759 2.223136932 -0.006099 103 46 18688 YNL112W intron no 1102 941 958 30.007395 286.197375 158.102385 2.198938421 0.017543 103 47 18162 YLR448W 5_exon no 484 21 40 32.026908 296.10618 164.066544 2.21502003 0.030796 103 48 8847 LSR1 / U2 RNA U2 yes 1375 876 892 99.195372 363.648057 231.4217145 2.364404107 -0.039596 103 49 9419 RUF2 5_flank no 468 29.951002 293.547303 161.7491525 2.208842014 -0.023201 103 50 208 Arg2 ArgACG_ii 3_flank no 273 31.950846 306.20161 169.076228 2.22808255 -0.033413 103 51 6146 snR39B snR39B yes 296 71 88 38.01687 302.474498 170.245684 2.231076111 0.065971 103 52 14150 MT_COB intronic no 7308 6436 6458 29.872906 365.578697 197.7258015 2.296063345 -0.493222 103 53 632 Gln2 GlnTTG_i 5_flank no 272 31.905495 296.806479 164.355987 2.215785529 0.022481 103 54 8985 snR17a / U3a U3a yes 690 211 227 50.287637 301.158403 175.72302 2.244828659 0.11843 103 55 18254 YML034W 3_exon no 226 181 195 76.074294 313.854987 194.9646405 2.289955853 0.155966 103 56 678 Gln3 GlnTTG_ii 5_flank no 272 29.978781 305.851687 167.915234 2.225090099 -0.097834 103 57 18146 YLR406C intron no 449 301 313 38.15502 256.857913 147.5064665 2.16881106 0.475425 103 58 17223 YHR041C intron/exon no 201 141 161 31.000111 317.364453 174.182282 2.241003976 -0.130884 103 59 651 Gln2 GlnTTG_i tRNA yes 272 41 53 46.233044 276.56331 161.398177 2.207898625 0.334542 103 60 8369 snoRNA cluster 5 5_flank no 586 11 25 123.56866 388.202311 255.8854855 2.408045652 -0.03034 103 61 14193 MT_COB exon6 yes 7308 7081 7098 29.629042 288.490398 159.05972 2.201560214 -0.012799 103 62 5982 snR36 3_flank no 555 29.410141 295.574816 162.4924785 2.210833263 -0.056627 103 63 14225 MT_ATP9 ATP9 yes 431 271 287 39.115567 300.21794 169.6667535 2.22959675 0.089495 103 64 2922 Pro8 ProTGG_vii 3_flank no 305 46.79338 314.046091 180.4197355 2.256284042 -0.009874 103 65 16258 YDR424C 5_exon no 196 21 37 48.602468 308.89153 178.746999 2.252238759 0.04313 103 66 13358 MT_COX1 intronic no 13084 9571 9593 28.890588 306.658447 167.7745175 2.224725999 -0.141293 103 67 4811 snR5 3_flank no 404 28.984101 286.173089 157.578595 2.197497224 -0.036255 103 68 1321 Ile3 IleTAT_ii 5_flank/tRNA no 333 35.081341 295.872233 165.476787 2.21873708 0.096144 103 69 5648 snR34 snR34 yes 750 161 180 31.292637 289.744011 160.518324 2.205524617 0.046568 103 70 19396 YPR063C 5_exon no 186 1 20 29.424782 304.348863 166.8868225 2.222422046 -0.108242 103 71 4773 snR5 snR5 yes 404 36 52 84.743513 304.522193 194.632853 2.289216149 0.280889 103 72 5935 snR36 snR36 yes 555 131 143 74.75757 305.977955 190.3677625 2.279593405 0.210446 103 73 263 Arg4 ArgCCT 5_flank no 272 31.272114 295.967836 163.619975 2.213836322 0.006752 103 74 4831 snR8 5_flank no 390 31.096505 298.390006 164.7432555 2.216807644 -0.014135 103 75 18766 YNL246W exon/intron no 195 41 57 42.782974 304.435578 173.609276 2.239572926 0.060117 103 76 19612 RNA14 1.1 RNA14 1.1 yes 401 141 158 46.600494 314.731282 180.665888 2.25687616 -0.016641 103 77 15303 YAL001C exon/intron no 190 41 58 54.491993 338.684962 196.5884775 2.293558059 -0.165069 103 78 2644 Pro3 ProTGG_ii 3_flank no 303 28.924445 296.213695 162.56907 2.211037921 -0.085376 103 79 20584 YHR016C spliced yes 40 25 37 32.936792 296.578872 164.757832 2.216846069 0.057112 103 80 4081 SRP SRP yes 875 296 312 50.82502 293.202486 172.013753 2.235563171 0.191716 103 81 10225 RUF6 RUF6 yes 1251 971 987 32.957551 279.54697 156.2522605 2.193826309 0.166662 103 82 20920 YLR344W spliced yes 40 21 35 46.636522 281.655215 164.1458685 2.215229956 0.285737 103 83 10316 RUF7 RUF7 yes 700 191 208 30.697602 288.703482 159.700542 2.20330639 0.033144 103 84 16130 YDR064W intron no 639 521 540 30.509601 310.069676 170.2896385 2.231188224 -0.104724 103 85 21513 copy of SH2858 no 303 61.459868 284.12821 172.794039 2.237528756 0.325091 103 86 9540 RUF3 RUF3 yes 631 86 101 30.270957 278.519513 154.395235 2.188633893 0.067342 103 87 11063 "rRNA(18S,5.8S,25S)" 18S yes 7956 2201 2219 13547.69971 21776.13544 17661.91758 4.247037854 -1.324263 103 88 9380 RUF1 RUF1 yes 750 476 492 310.687655 578.979474 444.8335645 2.648197549 0.021219 103 89 3023 Ser2 SerAGA_ii tRNA/3_flank no 282 35.954945 287.501946 161.7284455 2.208786412 0.177251 103 90 15813 YDL061C intron no 509 401 422 28.168449 303.327026 165.7477375 2.219447609 -0.158127 103 91 16125 YDR064W intron no 639 421 438 33.722009 279.255633 156.488821 2.194483319 0.192526 103 92 16075 YDR025W exon/intron no 439 41 60 25.943987 294.710746 160.3273665 2.205007659 -0.249149 103 93 18097 YLR367W intron no 583 161 182 31.437754 303.473455 167.4556045 2.223899687 -0.03384 103 94 8094 snoRNA cluster 2 3_flank no 739 706 720 70.114638 309.315805 189.7152215 2.278102177 0.156808 103 95 3142 Ser4 SerGCT 3_flank no 301 35.16525 307.066399 171.1158245 2.233290174 0.005357 103 96 3872 RNaseP RNaseP yes 569 326 341 55.320488 281.012101 168.1662945 2.225738955 0.324632 103 97 15458 YBL087C intron no 604 321 338 33.776023 330.260907 182.018465 2.260115448 -0.191292 103 98 19959 YBL059C-A spliced yes 40 17 33 32.21451 284.93615 158.57533 2.200235624 0.107694 103 99 14187 MT_COB exon6 yes 7308 6991 7010 28.674445 282.580909 155.627677 2.192086835 -0.036123 103 100 7289 snR66 5_flank no 286 28.955087 303.356947 166.156017 2.220516073 -0.119035 103 101 17432 YIL133C intron no 390 121 135 39.134412 338.51028 188.822346 2.276053389 -0.243593 103 102 16096 YDR059C 5_exon no 190 21 38 31.357247 331.144712 181.2509795 2.258280362 -0.228664 103 103 959 Gly1 GlyCCC_i tRNA yes 272 46 58 35.537699 268.327327 151.932513 2.181650721 0.320788 103 104 14310 MT_VAR1 VAR1 yes 1467 856 878 31.592168 356.554925 194.0735465 2.287966342 -0.410535 104 2 21836 copy of SH16601 no 421 32.768683 328.225263 180.496973 2.256469923 -0.188549 104 3 20792 YKL156W spliced yes 40 5 22 32.605519 324.048266 178.3268925 2.251216842 -0.158964 104 4 7085 snR63 5_flank no 455 34.37987 277.095495 155.7376825 2.192393708 0.226999 104 5 4757 snR5 5_flank no 404 34.180603 246.08261 140.1316065 2.146536101 0.42096 104 6 11674 "rRNA(18S,5.8S,25S)" 25S yes 7956 5256 5273 54.265159 333.941411 194.103285 2.288032885 -0.130024 104 7 10977 "rRNA(18S,5.8S,25S)" 18S yes 7956 1771 1790 41.436464 300.074485 170.7554745 2.232374636 0.096093 104 8 16808 YGL137W intron/exon no 300 241 262 29.790061 325.788567 177.789314 2.249905654 -0.220695 104 9 20008 YBR082C spliced yes 40 13 29 42.8462 296.946515 169.8963575 2.230184068 0.128648 104 10 5701 snR34 snR34 yes 750 426 444 29.442415 307.950647 168.696531 2.227106152 -0.129278 104 11 6703 snR49 snR49 yes 365 41 57 123.859669 379.278902 251.5692855 2.400657616 0.021395 104 12 13054 MT_COX1 ai2 no 13084 5011 5032 32.785463 365.502341 199.143902 2.299167012 -0.476399 104 13 14337 MT_VAR1 VAR1 yes 1467 1261 1285 32.593653 304.786575 168.690114 2.227089632 -0.00767 104 14 5088 snR11 snR11 yes 458 41 58 30.60814 296.229993 163.4190665 2.213302725 -0.017288 104 15 17975 YLR211C 5_exon no 159 21 37 47.045492 346.87246 196.958976 2.294375778 -0.270737 104 16 17854 YKR095W intron no 175 61 77 36.957636 324.4734 180.715518 2.256995447 -0.132773 104 17 545 Cys1 CysGCA tRNA yes 272 26 43 28.822984 308.200616 168.5118 2.226630318 -0.152975 104 18 18846 YNL312W intron no 208 101 122 28.994673 308.90112 168.9478965 2.227752789 -0.150954 104 19 4672 snR3 3_flank no 395 44.115603 298.081755 171.098679 2.233246657 0.12234 104 20 13621 MT_ATP6 ATP6 yes 980 121 140 27.568167 303.794733 165.68145 2.219273887 -0.193648 104 21 3975 RNase MRP RNaseMRP yes 540 291 305 42.927356 294.440736 168.684046 2.227074009 0.152277 104 22 746 Gln4 GlnTTG_iii tRNA yes 272 1 18 60.572764 350.079933 205.3263485 2.312444684 -0.209827 104 23 18222 YML026C exon/intron no 501 41 60 28.27411 280.131787 154.2029485 2.188092678 -0.046377 104 24 17640 YJR145C exon/intron no 356 41 55 53.806114 305.321161 179.5636375 2.254218395 0.099401 104 25 6490 snR46 5_flank no 397 28.71951 293.285375 161.0024425 2.206832465 -0.083194 104 26 13852 MT_COB bi2 no 7308 1966 1990 28.849011 302.125671 165.487341 2.218764778 -0.115749 104 27 1484 Leu2 LeuCAA_ii 3_flank no 314 34.75665 298.428338 166.592494 2.22165543 0.071035 104 28 21752 copy of SH12973 no 13084 26.816861 302.673994 164.7454275 2.21681337 -0.231658 104 29 9715 RUF4 RUF4 yes 988 351 368 41.210033 309.052928 175.1314805 2.243364219 0.013492 104 30 7989 snoRNA cluster 2 snR57/intergenic no 739 181 197 36.000648 295.537299 165.7689735 2.219503248 0.109654 104 31 20879 YLR211C spliced yes 40 1 17 68.380143 328.785739 198.582941 2.297941938 -0.004236 104 32 3184 Ser5 SerTGA tRNA yes 282 41 e23 67.902669 317.161195 192.531932 2.284502769 0.081599 104 33 10998 "rRNA(18S,5.8S,25S)" 18S yes 7956 1876 1893 48463.18232 21490.9978 34977.09006 4.543783675 0.258628 104 34 20702 YJL001W spliced yes 40 17 32 39.175867 329.289737 184.232802 2.265366957 -0.167691 104 35 1774 Leu7 LeuTAA 3_flank no 284 31.791303 284.444431 158.117867 2.198980947 0.097065 104 36 7154 snR63 3_flank no 455 30.177352 273.418746 151.798049 2.18126619 0.087143 104 37 16438 YER074W intron no 566 321 337 32.471219 252.604222 142.5377205 2.153929809 0.306414 104 38 3273 Thr2 ThrCGT 5_flank no 272 50.649097 260.528762 155.5889295 2.191978693 0.511362 104 39 17181 YHR021C intron no 650 201 217 34.243178 331.837346 183.040262 2.262546629 -0.202441 104 40 8989 snR17a / U3a U3a yes 690 231 247 142.353394 378.880905 260.6171495 2.41600299 0.129072 104 41 17690 YKL006W intron no 498 301 317 33.841446 273.188591 153.5150185 2.186150869 0.23666 104 42 731 Gln4 GlnTTG_iii 5_flank no 272 41.154533 298.288542 169.7215375 2.229736957 0.112149 104 43 21611 copy of SH7092 no 455 32.067221 297.518871 164.793046 2.216938881 0.023347 104 44 10085 RUF6 RUF6 yes 1251 271 289 30.048577 304.140101 167.094339 2.222961737 -0.085073 104 45 17898 YLR061W 5_exon no 489 21 40 40.236551 345.385025 192.810788 2.28513133 -0.294786 104 46 5964 snR36 snR36 yes 555 276 292 32.025158 299.31085 165.668004 2.21923864 0.01092 104 47 12182 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7796 7813 50.35291 291.279132 170.816021 2.232528601 0.206797 104 48 20183 YDL191W spliced yes 40 9 25 35.996633 284.180704 160.0886685 2.204360592 0.206446 104 49 19 Ala1 AlaAGC 5_flank/tRNA no 273 42.043605 309.837392 175.9404985 2.245365818 0.009391 104 50 17471 YJL001W 5_exon no 216 1 17 33.860066 292.258037 163.0590515 2.212344912 0.111846 104 51 4553 U3b (snR17b) U3b yes 662 321 335 37.872565 276.866958 157.3697615 2.196921287 0.291916 104 52 6498 snR46 5_flank no 397 48.015091 358.91686 203.4659755 2.308491795 -0.353043 104 53 4718 snR4 snR4 yes 386 126 138 48.046893 272.337806 160.1923495 2.204641771 0.382255 104 54 1360 Ile3 IleTAT_ii 3_flank no 333 29.830846 281.67523 155.753038 2.192436526 0.029583 104 55 17878 YLR048W intron no 459 81 99 31.922041 316.505113 174.213577 2.241081998 -0.109529 104 56 998 Gly2 GlyCCC_ii 5_flank no 272 31.985502 305.294571 168.6400365 2.226960688 -0.026819 104 57 21870 copy of SH18600 no 549 32.027132 303.248917 167.6380245 2.224372534 -0.013082 104 58 11908 "rRNA(18S,5.8S,25S)" 25S yes 7956 6426 6444 29348.9825 14780.91754 22064.95002 4.343702948 0.265516 104 59 15212 MT_COX3 cox3 no 1010 601 621 31.984627 308.972513 170.47857 2.231669794 -0.049191 104 60 15969 YDL130W 3_exon no 401 361 377 31.880515 299.054713 165.467614 2.218713005 0.007769 104 61 7051 snR62 snR62 yes 300 46 67 29.704133 311.666349 170.685241 2.23219597 -0.142119 104 62 7254 snR65 snR65 yes 300 46 65 31.525876 293.205839 162.3658575 2.210494711 0.032454 104 63 9892 RUF5-1 RUF5-1 yes 975 266 284 31.328901 302.142353 166.735627 2.222028407 -0.029369 104 64 20162 YDL130W spliced yes 40 21 33 74.205883 308.702611 191.454247 2.282065005 0.185477 104 65 10753 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 651 668 46.992441 304.06523 175.5288355 2.244348472 0.076822 104 66 19367 YPR028W intron no 233 141 158 33.105575 295.626273 164.365924 2.215811786 0.068373 104 67 14579 MT_21S intronic no 4639 2896 2917 29.249189 329.862548 179.5558685 2.254199604 -0.262709 104 68 10793 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 851 871 35.394084 296.252125 165.8231045 2.219645042 0.096648 104 69 7008 snR60 3_flank no 304 29.545832 313.547468 171.54665 2.234382241 -0.158778 104 70 10144 RUF6 RUF6 yes 1251 566 582 37.701836 318.888632 178.295234 2.251139734 -0.082442 104 71 13999 MT_COB intronic no 7308 4171 4197 27.635525 323.063838 175.3496815 2.243904981 -0.283624 104 72 19322 YPL218W 5_exon no 239 1 22 29.558255 314.12233 171.8402925 2.235125003 -0.161712 104 73 3012 Ser2 SerAGA_ii tRNA yes 282 21 38 54.487213 363.694005 209.090609 2.320334528 -0.345236 104 74 2009 Lys3 LysTTT_i 5_flank/tRNA no 296 33.184141 291.806134 162.4951375 2.21084037 0.094795 104 75 9885 RUF5-1 RUF5-1 yes 975 231 243 38.942481 274.776208 156.8593445 2.195510396 0.322184 104 76 5145 snR11 3_flank no 458 46.735335 290.869373 168.802354 2.227378499 0.19774 104 77 14053 MT_COB bi4 no 7308 4981 4996 50.676425 292.372547 171.524486 2.234326127 0.198479 104 78 20001 YBR078W spliced yes 40 9 21 73.707165 305.578431 189.642798 2.277936354 0.207736 104 79 1218 Ile1 IleAAT tRNA yes 274 50 62 29.047742 284.455313 156.7515275 2.195211782 -0.02483 104 80 13029 MT_COX1 ai2 no 13084 4636 4655 27.091481 302.417551 164.754516 2.216837328 -0.214699 104 81 8091 snoRNA cluster 2 3_flank no 739 691 707 32.941335 285.504834 159.2230845 2.202006033 0.12732 104 82 17771 YKL180W intron no 406 81 98 42.622925 339.371589 190.997257 2.28102713 -0.237531 104 83 1765 Leu7 LeuTAA 3_flank no 284 30.634018 335.437464 183.035741 2.262535902 -0.270157 104 84 6022 snR37 snR37 yes 586 26 50 28.506691 303.005614 165.7561525 2.219469657 -0.138169 104 85 14658 MT_21S 21S_rRNA4 yes 4639 4081 4097 42.856482 315.030839 178.9436605 2.252716317 -0.033478 104 86 3257 Thr1 ThrAGT 3_flank no 273 35.986875 287.239587 161.613231 2.208476913 0.179875 104 87 9067 snR14 / U4 RNA 5_flank no 360 32.105484 313.275091 172.6902875 2.237267913 -0.081806 104 88 21175 YNR053C spliced yes 40 1 15 34.007827 278.407552 156.2076895 2.193702409 0.20694 104 89 17093 YHL001W intron no 498 241 260 30.110759 321.856167 175.983463 2.245471859 -0.187155 104 90 21432 Tyr1_2 spliced yes 40 21 35 47.221439 317.54349 182.3824645 2.26098308 -0.036873 104 91 15799 YDL061C intron no 509 121 137 31.695425 301.902139 166.798782 2.222192875 -0.015759 104 92 8573 snR19 / U1 RNA U1 yes 868 361 373 63.702513 309.204897 186.453705 2.270571018 0.120928 104 93 10863 "rRNA(18S,5.8S,25S)" 18S yes 7956 1201 1219 27.547303 279.875728 153.7115155 2.186706404 -0.085623 104 94 1864 Leu9 LeuTAG_ii tRNA yes 301 41 49 36.809602 284.803228 160.806415 2.20630337 0.210285 104 95 2809 Pro6 ProTGG_v 3_flank no 302 42.497278 340.151398 191.324338 2.281770219 -0.244315 104 96 20069 YCR028C-A spliced yes 40 1 20 43.696729 338.116914 190.9068215 2.280821447 -0.221643 104 97 15451 YBL087C intron no 604 181 197 48.889693 309.521794 179.2057435 2.253351925 0.039197 104 98 15938 YDL115C intron no 189 121 138 49.453987 382.587001 216.020494 2.334494955 -0.507879 104 99 14983 MT_COX 2; ORF1 COX2 no 2427 346 366 28.589719 273.448608 151.0191635 2.17903206 0.003024 104 100 15 Ala1 AlaAGC 5_flank no 273 32.814263 320.991545 176.902904 2.247734962 -0.132899 104 101 8317 snoRNA cluster4 intergenic no 638 371 390 31.111315 319.264238 175.1877765 2.243503801 -0.141631 104 102 8092 snoRNA cluster 2 3_flank no 739 696 712 31.310569 313.864998 172.5877835 2.237010051 -0.100063 104 103 11940 "rRNA(18S,5.8S,25S)" 25S yes 7956 6586 6603 35.492218 261.750393 148.6213055 2.172081072 0.365142 104 104 13399 MT_COX1 intronic no 13084 10186 10214 29.522515 356.191728 192.8571215 2.28523568 -0.433822 105 2 6326 snR42 3_flank no 551 38.383685 285.754435 162.06906 2.209700113 0.219384 105 3 4954 snR9 snR9/3_flank no 387 30.360682 274.42124 152.390961 2.182959208 0.09168 105 4 10221 RUF6 RUF6 yes 1251 951 965 50.620301 349.64334 200.1318205 2.301316146 -0.2696 105 5 20810 YKL186C spliced yes 40 9 26 33.923168 278.650904 156.287036 2.193922955 0.202728 105 6 12696 MT_ORF 8 ORF8 yes 491 106 133 29.948371 339.681236 184.8148035 2.266736755 -0.310599 105 7 21623 copy of SH7518 no 284 29.818419 286.474082 158.1462505 2.1990589 0.00644 105 8 9661 RUF4 RUF4 yes 988 81 98 31.576473 275.032084 153.3042785 2.185554276 0.149726 105 9 16541 YER131W 3_exon no 461 441 457 213.022304 519.122548 366.072426 2.563567017 -0.154173 105 10 16332 YDR471W intron no 484 401 423 29.384295 303.458911 166.421603 2.221209701 -0.104288 105 11 12903 MT_COX1 exon2/ai2 no 13084 2746 2760 34.780134 280.7311 157.755617 2.197984832 0.215086 105 12 9201 snR7 U5 RNA 3_flank no 415 34.540226 285.798387 160.1693065 2.204579295 0.174921 105 13 14467 MT_21S 21S_rRNA3 yes 4639 1216 1238 28.800312 306.442769 167.6215405 2.224329828 -0.143266 105 14 3682 Val2 ValAAC_ii 3_flank no 274 32.283402 277.776085 155.0297435 2.190415028 0.156782 105 15 16388 YER044C 5_exon no 188 1 18 54.113764 337.040665 195.5772145 2.291318256 -0.154767 105 16 7207 snR64 snR64/3_flank no 301 34.009431 280.081611 157.045521 2.196025555 0.195951 105 17 8728 LSR1 / U2 RNA U2 yes 1375 281 300 30.490707 300.921091 165.705899 2.219337969 -0.05023 105 18 17953 YLR185W exon/intron no 459 41 58 36.221327 332.018439 184.119883 2.26510069 -0.198838 105 19 16716 YGL031C intron no 556 461 483 27.268749 274.806213 151.037481 2.179084734 -0.082999 105 20 10148 RUF6 RUF6 yes 1251 586 605 35.004265 316.27502 175.6396425 2.244622544 -0.069566 105 21 9830 RUF5-1 5_flank no 975 31.548632 301.243696 166.396164 2.22114331 -0.016586 105 22 19607 RNA14 1.1 RNA14 1.1 yes 401 41 58 29.923541 283.668607 156.796074 2.195335184 0.025013 105 23 19998 YBR048W spliced yes 40 21 37 71.852004 335.162603 203.5073035 2.30858 -0.029384 105 24 20633 YHR123W spliced yes 40 25 39 59.574484 319.259388 189.416936 2.277418807 0.016106 105 25 20278 YDR450W spliced yes 40 5 22 30.569014 283.68334 157.126177 2.196248544 0.058103 105 26 303 Arg4 ArgCCT 3_flank no 272 28.711915 294.674299 161.693107 2.208691506 -0.089897 105 27 17804 YKL190W intron no 176 101 118 44.33613 298.639641 171.4878855 2.234233445 0.117921 105 28 19771 Negative Control no 60 NA #VALUE! 30.497661 288.630329 159.563995 2.202934901 0.026787 105 29 14841 MT_Asp tRNAAsp yes 275 136 152 137.442708 432.220722 284.831715 2.454588345 -0.174141 105 30 5773 snR35 snR35 yes 740 51 67 30.888056 299.503277 165.1956665 2.21799865 -0.028014 105 31 4285 telomerase RNA telomerase yes 1501 461 475 91.037875 336.87985 213.9588625 2.33033028 0.081822 105 32 4275 telomerase RNA telomerase yes 1501 411 425 35.030001 256.653906 145.8419535 2.163882473 0.387656 105 33 19105 YOR312C intron no 507 321 340 33.983334 460.315534 247.149434 2.39295962 -1.097817 105 34 17645 YJR145C intron no 356 141 157 51.930917 371.433951 211.682434 2.325684821 -0.415632 105 35 527 Cys1 CysGCA 5_flank no 272 73.284138 305.512243 189.3981905 2.277375825 0.205857 105 36 13011 MT_COX1 ai2 no 13084 4366 4385 30.873917 290.388527 160.631222 2.205829963 0.02841 105 37 7555 snR79 3_flank no 284 36.123016 284.24513 160.184073 2.204619332 0.207337 105 38 8625 snR19 / U1 RNA U1 yes 868 621 635 149.34311 396.027006 272.685058 2.435661341 0.074623 105 39 6370 snR43 snR43 yes 409 91 109 35.136276 298.733334 166.934805 2.222546894 0.073009 105 40 3851 RNaseP RNaseP yes 569 221 233 33.526314 282.806655 158.1664845 2.199114462 0.163184 105 41 5363 snR30 3_flank no 801 29.769669 282.958858 156.3642635 2.194137504 0.020338 105 42 14250 MT_Ser 3_flank no 290 226 250 29.933585 365.362678 197.6481315 2.295892713 -0.490921 105 43 21237 YOR293W spliced yes 40 21 36 44.311857 292.655479 168.483668 2.226557809 0.173365 105 44 6243 snR42 5_flank/snR42 no 551 32.06268 304.075449 168.0690645 2.225487783 -0.016935 105 45 12549 MT_ORF6 + ORF7 (hypothetical) 3_flank no 664 631 655 29.995907 305.363835 167.679871 2.224480931 -0.094298 105 46 8447 snoRNA cluster 5 snR128 yes 586 401 415 913.978686 723.647766 818.813226 2.913184849 0.893263 105 47 11256 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3166 3179 44.135751 254.773563 149.454657 2.174509452 0.559123 105 48 11385 "rRNA(18S,5.8S,25S)" 25S yes 7956 3811 3831 42438.57723 13983.46065 28211.01894 4.450418772 0.809241 105 49 14122 MT_COB intronic no 7308 6016 6038 33.840072 311.710779 172.7754255 2.237481971 -0.047647 105 50 10270 RUF7 5_flank no 700 33.791341 308.087559 170.93945 2.232842302 -0.01935 105 51 15403 YBL050W intron/exon no 216 161 177 49.979872 371.733581 210.8567265 2.32398746 -0.431338 105 52 3373 Thr4 ThrTGT_ii 5_flank no 272 31.740067 311.609664 171.6748655 2.234706716 -0.073373 105 53 14023 MT_COB exon4 yes 7308 4531 4550 29.754231 338.649906 184.2020685 2.265294503 -0.305777 105 54 3140 Ser4 SerGCT 3_flank no 301 31.83667 275.165317 153.5009935 2.186111191 0.159618 105 55 8297 snoRNA cluster4 intergenic no 638 271 290 31.913574 279.722053 155.8178135 2.192617106 0.131897 105 56 19113 YOR312C 3_exon no 507 481 495 50.37565 314.646739 182.5111945 2.261289507 0.003199 105 57 1074 Gly3 GlyGCC 3_flank no 271 29.991993 290.475893 160.233943 2.20475452 -0.003015 105 58 13913 MT_COB bi3 no 7308 2881 2907 29.997283 328.397738 179.1975105 2.253331972 -0.228143 105 59 1317 Ile3 IleTAT_ii 5_flank no 333 29.959452 308.261383 169.1104175 2.228170362 -0.112956 105 60 3298 Thr2 ThrCGT 3_flank no 272 33.938555 327.389491 180.664023 2.256871677 -0.167724 105 61 11882 "rRNA(18S,5.8S,25S)" 25S yes 7956 6296 6314 31.781024 264.324919 148.0529715 2.170417128 0.212636 105 62 15285 MT_9S 9S yes 701 451 463 86.176199 352.123226 219.1497125 2.340740905 -0.052195 105 63 7936 snoRNA cluster1 3_flank no 1574 1476 1500 31.494529 297.575545 164.535037 2.216258393 0.004179 105 64 2849 Pro7 ProTGG_vi tRNA-intron no 303 i15 i31 97.333928 337.15184 217.242884 2.33694556 0.119773 105 65 8463 snoRNA cluster 5 snR128/3_flank no 586 481 498 31.363211 309.009948 170.1865795 2.23092531 -0.069606 105 66 11007 "rRNA(18S,5.8S,25S)" 18S yes 7956 1921 1934 5016.117379 5252.783673 5134.450526 3.710493973 -0.167694 105 67 11605 "rRNA(18S,5.8S,25S)" 25S yes 7956 4911 4928 8180.30249 20608.47948 14394.39099 4.158193295 -1.84914 105 68 63 Ala2 AlaTGC 5_flank no 273 33.668406 307.271276 170.469841 2.231647556 -0.014302 105 69 17466 YIL148W intron no 534 421 441 31.77308 302.219653 166.9963665 2.222707022 -0.015139 105 70 15477 YBL091C intron no 188 101 113 39.943499 277.935095 158.939297 2.201231288 0.304445 105 71 5541 snR33 5_flank/snR33 no 383 31.796075 326.737205 179.26664 2.253499479 -0.189796 105 72 13010 MT_COX1 ai2 no 13084 4351 4368 33.688595 313.385197 173.536896 2.239391825 -0.062745 105 73 17597 YJL191W 3_exon no 508 461 475 31.488473 268.025051 149.756762 2.175386441 0.179756 105 74 5456 snR32 5_flank no 388 45.276048 302.238613 173.7573305 2.239943136 0.08805 105 75 13681 MT_ORF 5 5_flank no 331 61 80 31.134264 303.149327 167.1417955 2.223085063 -0.042002 105 76 6767 snR50 snR50 yes 290 11 28 105.035443 393.85179 249.4436165 2.396972394 -0.178377 105 77 20068 YBR230C spliced yes 40 21 37 40.941272 309.757043 175.3491575 2.243903684 0.006318 105 78 21057 YMR194W spliced yes 40 5 21 73.983064 331.493366 202.738215 2.306935618 0.011244 105 79 3206 Ser5 SerTGA 3_flank no 282 29.136768 303.499506 166.318137 2.220939612 -0.113368 105 80 6180 snR40 5_flank no 297 31.097782 316.270445 173.6841135 2.239760096 -0.121241 105 81 16168 YDR139C intron no 173 81 101 31.001632 281.965806 156.483719 2.194469159 0.086914 105 82 1138 His1 HisGTG 5_flank no 272 30.832953 313.580081 172.206517 2.236049583 -0.114443 105 83 6434 snR45 snR45 yes 372 16 37 38.433656 306.101729 172.2676925 2.236203836 0.033659 105 84 12735 MT_COX1 exon1 yes 13084 226 243 30.43258 297.890326 164.161453 2.215271187 -0.033585 105 85 5176 snR13 snR13 yes 324 36 50 66.195837 312.023694 189.1097655 2.276713956 0.111685 105 86 16442 YER074W intron no 566 401 417 39.84288 314.594608 177.218744 2.248509654 -0.03952 105 87 19584 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 381 393 37.87809 288.360663 163.1193765 2.212505553 0.191456 105 88 10129 RUF6 RUF6 yes 1251 491 507 32.083207 274.64753 153.3653685 2.185727302 0.171141 105 89 17089 YHL001W intron no 498 161 180 28.191643 296.88326 162.5374515 2.210953446 -0.128255 105 90 16113 YDR064W intron no 639 181 198 26.171102 262.406952 144.289027 2.159233305 -0.104206 105 91 395 Asn1 AsnGTT tRNA yes 274 55 69 70.860427 316.215381 193.537904 2.286766033 0.106838 105 92 12582 MT_15S 15S yes 1848 481 497 31.466178 279.396345 155.4312615 2.191538372 0.1193 105 93 2303 Phe2 PheGAA_ii 3_flank no 292 48.191866 324.231227 186.2115465 2.270006607 -0.086895 105 94 4734 snR4 3_flank no 386 36.801111 320.562319 178.681715 2.252080112 -0.099277 105 95 2889 Pro8 ProTGG_vii 5_flank no 305 38.725944 303.190551 170.9582475 2.232890057 0.061051 105 96 10195 RUF6 RUF6 yes 1251 821 840 31.415512 319.516246 175.465879 2.244192676 -0.139552 105 97 13364 MT_COX1 intronic no 13084 9661 9678 33.599602 297.109553 165.3545775 2.218416222 0.067961 105 98 19256 YPL143W 5_exon no 625 1 18 39.738876 336.637056 188.187966 2.274591848 -0.226189 105 99 20032 YBR181C spliced yes 40 17 35 28.538185 260.911477 144.724831 2.160543051 0.055412 105 100 1924 Lys1 LysCTT_i 3_flank no 272 32.746949 281.096882 156.9219155 2.195683601 0.149788 105 101 10989 "rRNA(18S,5.8S,25S)" 18S yes 7956 1831 1847 40546.81653 9224.238596 24885.52756 4.395946852 1.444479 105 102 7311 snR66 snR66 yes 286 46 63 47.277045 353.062888 200.1699665 2.301398916 -0.31507 105 103 18693 YNL112W intron/exon no 1102 1041 1061 31.379437 278.114384 154.7469105 2.189621987 0.124884 105 104 12247 5S rRNA NTS2 no 1420 191 205 43.707876 331.059115 187.3834955 2.272731336 -0.165895 106 2 13709 MT_Glu (and 5_flank processing site for COB) tRNA/3_flank no 368 166 188 30.206484 341.404173 185.8053285 2.269058164 -0.319549 106 3 11821 "rRNA(18S,5.8S,25S)" 25S yes 7956 5991 6008 33.944745 274.25432 154.0995325 2.187801321 0.232674 106 4 7383 snR68 snR68/3_flank no 336 35.708015 325.916676 180.8123455 2.25722808 -0.148314 106 5 18178 YLR448W intron no 484 341 353 77.648362 327.464298 202.55633 2.30654582 0.064106 106 6 16249 YDR397C 5_exon no 192 21 37 41.125063 338.044952 189.5850075 2.27780399 -0.232754 106 7 17288 YHR141C intron no 541 281 300 31.515621 281.315174 156.4153975 2.194279503 0.108338 106 8 6112 snR39B 5_flank no 296 31.40701 300.83483 166.12092 2.220424328 -0.018783 106 9 5512 snR32 3_flank no 388 30.344024 311.279862 170.811943 2.232518233 -0.117579 106 10 2870 Pro7 ProTGG_vi 3_flank no 303 32.984215 292.726435 162.855325 2.211801964 0.082687 106 11 21261 YPL079W spliced yes 40 13 30 36.482361 297.582895 167.032628 2.222801314 0.098111 106 12 3819 RNaseP RNaseP yes 569 61 73 62.137622 334.690487 198.4140545 2.297572432 -0.08821 106 13 3485 Tyr1 TyrGTA_i 5_flank no 289 26.816758 291.475516 159.146137 2.201796101 -0.181462 106 14 4685 snR4 5_flank no 386 32.076775 292.858632 162.4677035 2.210767042 0.052726 106 15 21930 copy of SH21370 no 40 33.765802 270.308107 152.0369545 2.181949162 0.253839 106 16 19818 Negative Control no 60 NA #VALUE! 34.677529 307.156351 170.91694 2.232785109 -0.00115 106 17 5948 snR36 snR36 yes 555 196 220 28.485157 293.357842 160.9214995 2.206614071 -0.096254 106 18 5849 snR35 snR35 yes 740 431 448 40.623098 345.814244 193.218671 2.286049091 -0.296831 106 19 10426 RUF8 RUF8 yes 1151 56 78 27.179859 285.011651 156.095755 2.193391093 -0.130702 106 20 16491 YER117W 5_exon no 571 1 17 48.097967 317.384245 182.741106 2.261836249 -0.031031 106 21 4701 snR4 snR4 yes 386 41 62 27.788512 288.23583 158.012171 2.19869054 -0.111271 106 22 9884 RUF5-1 RUF5-1 yes 975 226 240 29.961735 260.449758 145.2057465 2.161983804 0.14071 106 23 10646 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 116 135 35.978178 308.805874 172.392026 2.236517174 0.00086 106 24 763 Gln4 GlnTTG_iii 3_flank no 272 32.335056 286.195567 159.2653115 2.202121195 0.103474 106 25 5185 snR13 snR13 yes 324 81 97 52.003561 347.040154 199.5218575 2.299990479 -0.242254 106 26 12345 5S rRNA NTS2 no 1420 681 696 70.896647 324.618512 197.7575795 2.296133138 0.042372 106 27 19474 ADH1 ADH1 yes 400 181 198 32.468445 313.659112 173.0637785 2.238206181 -0.080179 106 28 19229 YPL090C intron no 494 141 155 47.826549 281.010532 164.4185405 2.215950789 0.295611 106 29 15600 YBR089C intron/exon no 214 161 183 28.18516 319.289728 173.737444 2.239893428 -0.241424 106 30 5022 snR10 snR10 yes 445 141 153 48.834433 297.935719 173.385076 2.239011713 0.139629 106 31 19935 YBL026W spliced yes 40 17 36 29.475816 288.248953 158.8623845 2.201021077 -0.019741 106 32 4425 telomerase RNA telomerase yes 1501 1161 1182 31.107055 303.512307 167.309681 2.223521071 -0.045118 106 33 7492 snR71 snR71/3_flank no 290 32.859464 289.405987 161.1327255 2.207183753 0.099734 106 34 9300 RUF1 RUF1 yes 750 76 92 47.877896 308.812785 178.3453405 2.251261767 0.040114 106 35 17358 YIL052C intron no 572 61 81 31.297794 349.398758 190.348276 2.279548948 -0.362057 106 36 434 Asp1 AspGTC_i 5_flank/tRNA no 271 28.823122 300.562771 164.6929465 2.216675 -0.110237 106 37 7613 snR189 snR189 yes 389 136 155 30.195526 271.451863 150.8236945 2.178469575 0.097692 106 38 20855 YLR061W spliced yes 40 21 38 36.507368 322.750219 179.6287935 2.254375953 -0.119014 106 39 18744 YNL162W intron no 612 201 219 37.021456 308.297231 172.6593435 2.237190085 0.010272 106 40 14519 MT_21S 21S_rRNA3 yes 4639 1996 2012 39.465176 324.88803 182.176603 2.2604926 -0.12973 106 41 4034 SRP SRP yes 875 61 80 29.706258 304.574525 167.1403915 2.223081415 -0.099665 106 42 20635 YHR141C spliced yes 40 5 24 31.895122 294.881976 163.388549 2.213221616 0.034118 106 43 10422 RUF8 RUF8 yes 1151 36 55 31.97525 325.338351 178.6568005 2.252019552 -0.176866 106 44 6415 snR45 5_flank no 372 34.020682 311.288945 172.6548135 2.237178691 -0.042097 106 45 9013 snR17a / U3a U3a yes 690 351 363 38.059903 286.687858 162.3738805 2.21051617 0.207816 106 46 18129 YLR388W 3_exon no 258 221 237 44.116376 326.838435 185.4774055 2.268291012 -0.129739 106 47 20940 YLR426W spliced yes 40 1 17 35.917697 285.181562 160.5496295 2.205609308 0.196848 106 48 13935 MT_COB bi3 no 7308 3211 3235 33.843007 322.4661 178.1545535 2.250796927 -0.131444 106 49 7815 snoRNA cluster1 intergenic no 1574 871 889 33.802678 306.574033 170.1883555 2.230929842 -0.00704 106 50 3406 Thr4 ThrTGT_ii 3_flank no 272 32.7617 290.137186 161.449443 2.208036551 0.091977 106 51 4706 snR4 snR4 yes 386 66 78 315.010424 491.01335 403.011887 2.605317856 0.336652 106 52 18761 YNL162W intron no 612 541 560 31.755359 312.362789 172.059074 2.235677581 -0.079139 106 53 2105 Met1 MetCAT_i 5_flank no 273 33.823651 287.391906 160.6077785 2.205766575 0.142792 106 54 4347 telomerase RNA telomerase yes 1501 771 788 52.231279 317.310325 184.770802 2.266633344 -0.009118 106 55 14025 MT_COB exon4 yes 7308 4561 4583 29.911004 326.100626 178.005815 2.25043419 -0.218227 106 56 19751 Negative Control no 60 NA #VALUE! 36.078019 302.584023 169.331021 2.228736527 0.052308 106 57 16110 YDR064W intron no 639 121 138 32.029974 283.755797 157.8928855 2.198362562 0.109338 106 58 14844 MT_Asp 3_flank no 275 181 207 32.018724 335.213314 183.616019 2.263910567 -0.250199 106 59 11598 "rRNA(18S,5.8S,25S)" 25S yes 7956 4876 4893 27247.08463 15534.23577 21390.6602 4.330224189 0.091973 106 60 21652 copy of SH8772 no 1375 33.915093 284.367767 159.14143 2.201783256 0.165088 106 61 11335 "rRNA(18S,5.8S,25S)" 25S yes 7956 3561 3578 70.510042 324.985988 197.748015 2.296112133 0.03729 106 62 8647 snR19 / U1 RNA 3_flank no 868 31.677888 283.567589 157.6227385 2.197618869 0.099017 106 63 2087 Lys4 LysTTT_ii 3_flank no 296 32.595449 304.901602 168.7485255 2.227239987 -0.00858 106 64 2537 Pro2 ProTGG_i 5_flank no 303 31.540781 298.16406 164.8524205 2.217095328 0.002073 106 65 5553 snR33 snR33 yes 383 51 71 29.538556 318.958484 174.24852 2.241169098 -0.190538 106 66 6884 snR56 snR56 yes 288 51 70 29.592257 296.547984 163.0701205 2.212374392 -0.054509 106 67 19387 YPR043W intron no 503 321 338 56.013404 318.566149 187.2897765 2.272514071 0.001402 106 68 10589 RUF8 RUF8 yes 1151 871 890 33.826144 278.27885 156.052497 2.193270722 0.202197 106 69 20061 YBR255C-A spliced yes 40 17 34 29.853644 297.605951 163.7297975 2.214127725 -0.051883 106 70 19691 Negative Control no 60 NA #VALUE! 42.059429 299.795791 170.92761 2.23281222 0.100052 106 71 481 Asp2 AspGTC_ii 5_flank no 272 29.805993 274.707834 152.2569135 2.182577022 0.06164 106 72 9472 RUF2 RUF2 yes 468 201 215 37.748323 286.763213 162.255768 2.210200144 0.203763 106 73 14067 MT_COB bi4 no 7308 5191 5212 37.536653 372.542929 205.039791 2.31183815 -0.5123 106 74 11117 "rRNA(18S,5.8S,25S)" 18S yes 7956 2471 2487 405.326524 900.997191 653.1618575 2.815020815 -0.448631 106 75 21094 YNL044W spliced yes 40 1 18 33.195978 292.06135 162.628664 2.211197094 0.093558 106 76 3512 Tyr1 TyrGTA_i 3_flank no 289 29.168444 306.50403 167.836237 2.224885734 -0.130371 106 77 7759 snoRNA cluster1 snR76 yes 1574 591 610 29.171987 313.791167 171.481577 2.234217469 -0.173506 106 78 8213 snoRNA cluster 3; snR51 yes 743 576 593 29.203439 299.009893 164.106666 2.215126222 -0.083542 106 79 19855 Negative Control no 60 NA #VALUE! 31.202073 286.494992 158.8485325 2.200983207 0.064304 106 80 8623 snR19 / U1 RNA U1 yes 868 611 630 31.158312 325.179359 178.1688355 2.250831741 -0.186374 106 81 2508 Pro1 ProAGG tRNA yes 272 31 43 85.550222 352.86885 219.209536 2.340859443 -0.061351 106 82 1626 Leu5 LeuCAA_v 5_flank/tRNA no 315 66.4435 308.72391 187.583705 2.273195109 0.1399 106 83 10741 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 591 608 42.371317 294.195977 168.283647 2.226041915 0.15341 106 84 10445 RUF8 RUF8 yes 1151 151 167 36.267225 331.573481 183.920353 2.264629792 -0.194975 106 85 8868 LSR1 / U2 RNA U2 yes 1375 981 998 36.096903 292.345928 164.2214155 2.215429791 0.137591 106 86 16413 YER056C intron no 497 321 338 30.226616 289.684873 159.9557445 2.203999842 0.010751 106 87 13756 MT_COB intronic no 7308 526 550 28.276847 323.128682 175.7027645 2.244778595 -0.260038 106 88 3583 Val1 ValAAC_i 5_flank no 274 37.868839 330.854771 184.361805 2.265670951 -0.184966 106 89 14777 MT_ORF11; Leu; Gln tRNAGln yes 716 541 558 30.128341 325.567423 177.847882 2.250048698 -0.207654 106 90 12780 MT_COX1 ai1 no 13084 901 920 28.114918 321.732998 174.923958 2.242849296 -0.258065 106 91 19505 ACT1 ACT1 yes 401 1 17 31.76213 272.162753 151.9624415 2.181736263 0.1728 106 92 2431 Phe5 PheGAA_v 5_flank no 291 32.512719 286.401531 159.457125 2.20264393 0.107871 106 93 638 Gln2 GlnTTG_i 5_flank no 272 33.283527 305.920534 169.6020305 2.229431047 -0.008175 106 94 11449 "rRNA(18S,5.8S,25S)" 25S yes 7956 4131 4148 42.594074 299.488426 171.04125 2.233100862 0.104427 106 95 12278 5S rRNA NTS2 no 1420 346 363 33.231894 307.303644 170.267769 2.231132446 -0.019966 106 96 20407 YFR031C-A spliced yes 40 21 38 33.395982 297.672758 165.53437 2.21888818 0.060764 106 97 13176 MT_COX1 exon4 yes 13084 6841 6860 29.865128 318.881736 174.373432 2.241480315 -0.178614 106 98 16901 YGL226C intron/exon no 249 181 200 28.243065 306.529144 167.3861045 2.223719402 -0.168 106 99 808 Glu1 GluCTC tRNA yes 272 56 68 57.765386 251.621563 154.6934745 2.189471994 0.626875 106 100 1573 Leu4 LeuCAA_iv tRNA/intron no 314 35 i15 34.667714 330.564424 182.616069 2.26153899 -0.190577 106 101 1689 Leu6 LeuGAG tRNA yes 282 11 25 7458.427742 2385.393641 4921.910692 3.692133729 1.630635 106 102 16543 YER133W 5_exon no 625 21 40 33.159552 322.026333 177.5929425 2.249425703 -0.136519 106 103 5263 snR30 snR30 yes 801 166 182 31.302457 296.03706 163.6697585 2.213968442 0.007335 106 104 21363 Ile2_3 spliced yes 40 17 31 37.48185 290.885009 164.1834295 2.215329323 0.165561 107 2 12613 MT_15S 15S yes 1848 946 961 45.504177 292.908654 169.2064155 2.228416825 0.174774 107 3 8065 snoRNA cluster 2 snR61 yes 739 561 581 31.729676 313.689691 172.7096835 2.237316688 -0.08995 107 4 11004 "rRNA(18S,5.8S,25S)" 18S yes 7956 1906 1924 8468.013091 11702.14181 10085.07745 4.003679238 -0.864696 107 5 3331 Thr3 ThrTGT_i tRNA yes 272 1 15 42.849449 293.186952 168.0182005 2.225356329 0.164034 107 6 3473 Tyr1 TyrGTA_i 5_flank no 289 48.380482 292.027418 170.20395 2.230969635 0.191768 107 7 14721 MT_Cys; His tRNACys yes 456 136 156 27.543944 291.745668 159.644806 2.203154793 -0.141123 107 8 16892 YGL226C 5_exon no 249 1 17 34.943277 299.369289 167.156283 2.223122705 0.065472 107 9 20173 YDL137W spliced yes 40 13 34 35.75373 348.547397 192.1505635 2.283641662 -0.335771 107 10 4345 telomerase RNA telomerase yes 1501 761 780 30.944297 285.647476 158.2958865 2.199469629 0.061096 107 11 17207 YHR039C intron no 262 81 97 41.823455 281.994334 161.9088945 2.209270707 0.270577 107 12 12026 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 7016 7038 28.686565 310.96505 169.8258075 2.230003688 -0.17437 107 13 19712 Negative Control no 60 NA #VALUE! 44.815448 285.195281 165.0053645 2.217498064 0.245803 107 14 15894 YDL082W 3_exon no 465 421 438 31.862303 290.833854 161.3480785 2.207763798 0.058494 107 15 21715 copy of SH11500 no 7956 49.74329 316.775949 183.2596195 2.263066781 -0.017706 107 16 12468 5S rRNA 5S yes 1420 1296 1313 26894.5024 23284.33924 25089.42082 4.399490636 -0.596172 107 17 21840 copy of SH17170 no 268 35.509226 284.148753 159.8289895 2.203655554 0.201079 107 18 13496 MT_COX1 intronic no 13084 11641 11663 26.750725 300.718264 163.7344945 2.214140183 -0.226863 107 19 13098 MT_COX1 ai3 no 13084 5671 5690 32.599723 291.932911 162.266317 2.210228379 0.075441 107 20 17904 YLR061W intron no 489 141 162 38.648843 342.187798 190.4183205 2.27970873 -0.27501 107 21 16736 YGL076C intron no 559 141 158 27.799099 298.935493 163.367296 2.213165121 -0.159215 107 22 18839 YNL302C intron/exon no 651 601 613 53.033413 304.201812 178.6176125 2.25192428 0.104944 107 23 17184 YHR021C intron no 650 261 278 32.187274 324.612413 178.3998435 2.251394469 -0.168609 107 24 8309 snoRNA cluster4 intergenic no 638 331 348 32.373139 307.436903 169.905021 2.230206213 -0.031878 107 25 8410 snoRNA cluster 5 snR190 yes 586 216 238 34.42195 298.079479 166.2507145 2.22076352 0.069919 107 26 10046 RUF6 RUF6 yes 1251 76 97 28.606205 289.591701 159.098953 2.201667322 -0.072459 107 27 14463 MT_21S 21S_rRNA3 yes 4639 1156 1182 26.603422 310.985454 168.794438 2.227358132 -0.280148 107 28 15603 YBR119W 5_exon no 189 21 37 43.868151 299.839457 171.853804 2.23515915 0.105411 107 29 27 Ala1 AlaAGC tRNA yes 273 31 45 65.762189 345.666355 205.714272 2.313264423 -0.144077 107 30 18592 YNL069C 5_exon no 549 1 17 125.075796 350.883716 237.979756 2.376540015 0.195912 107 31 3705 Val3 ValCAC tRNA yes 273 6 22 88.741038 354.375622 221.55833 2.345488083 -0.049343 107 32 4244 telomerase RNA telomerase yes 1501 256 270 72.482696 331.950956 202.216826 2.305817289 -0.002034 107 33 1404 Leu1 LeuCAA_i tRNA yes 315 49 66 25.443176 265.470459 145.4568175 2.162734081 -0.167678 107 34 20118 YDL075W spliced yes 40 21 35 45.981319 304.526351 175.253835 2.24366753 0.069567 107 35 19281 YPL143W intron no 625 501 519 50.063589 376.321619 213.192604 2.328772134 -0.461757 107 36 9843 RUF5-1 RUF5-1 yes 975 21 41 29.721524 343.336752 186.529138 2.270746683 -0.340201 107 37 13814 MT_COB bi2 no 7308 1396 1418 32.053695 352.602133 192.327914 2.284042321 -0.378062 107 38 20805 YKL180W spliced yes 40 13 28 32.527561 307.111316 169.8194385 2.229987401 -0.027289 107 39 5558 snR33 snR33 yes 383 76 93 38.907274 316.729679 177.8184765 2.249976885 -0.060588 107 40 21697 copy of SH10662 no 7956 188.543 415.422179 301.9825895 2.479981905 0.175249 107 41 12974 MT_COX1 ai2 no 13084 3811 3828 31.618094 275.026232 153.322163 2.185604937 0.151801 107 42 9619 RUF3 3_flank no 631 31.77786 308.466634 170.122247 2.23076111 -0.052651 107 43 20128 YDL082W spliced yes 40 9 23 37.936119 307.914709 172.925414 2.237858824 0.01597 107 44 7705 snoRNA cluster1 intergenic/snR77 no 1574 321 338 29.839307 295.146389 162.492848 2.210834251 -0.037105 107 45 8407 snoRNA cluster 5 snR190 yes 586 201 217 32.85756 279.793845 156.3257025 2.194030389 0.161864 107 46 20591 YHR039C-A spliced yes 40 1 18 39.923961 338.307675 189.115818 2.276727856 -0.239106 107 47 3088 Ser3 SerCGA 3_flank no 301 41.923098 281.965994 161.944546 2.209366326 0.271075 107 48 14005 MT_COB intronic no 7308 4261 4285 31.77505 315.615835 173.6954425 2.239788423 -0.104486 107 49 4887 snR8 3_flank no 390 31.764312 291.669324 161.716818 2.208755187 0.049996 107 50 14475 MT_21S 21S_rRNA3 yes 4639 1336 1360 29.744089 317.733898 173.7389935 2.239897301 -0.176215 107 51 13284 MT_COX1 exon5a yes 13084 8461 8478 31.775135 293.010282 162.3927085 2.210566525 0.041906 107 52 2881 Pro8 ProTGG_vii 5_flank no 305 70.535045 347.36076 208.9479025 2.320038016 -0.124138 107 53 6024 snR37 snR37 yes 586 36 57 29.838384 304.359855 167.0991195 2.222974161 -0.093733 107 54 12731 MT_COX1 exon1 yes 13084 166 183 33.962318 279.488742 156.72553 2.195139747 0.198405 107 55 72 Ala2 AlaTGC 5_flank/tRNA no 273 79.118846 315.295478 197.207162 2.294922683 0.164075 107 56 2307 Phe2 PheGAA_ii 3_flank no 292 39.173049 283.000271 161.08666 2.207059577 0.251747 107 57 11935 "rRNA(18S,5.8S,25S)" 25S yes 7956 6561 6578 144.370305 430.438444 287.4043745 2.458493374 -0.125749 107 58 4696 snR4 snR4 yes 386 16 33 38.096827 346.234954 192.1658905 2.283676303 -0.30931 107 59 4870 snR8 snR8 yes 390 131 147 44.122572 300.998822 172.560697 2.236941886 0.095649 107 60 6399 snR43 3_flank no 409 33.835605 293.204829 163.520217 2.213571455 0.103554 107 61 11712 "rRNA(18S,5.8S,25S)" 25S yes 7956 5446 5459 125.117092 359.88478 242.500936 2.384713419 0.141688 107 62 4215 telomerase RNA telomerase yes 1501 111 127 29.622538 289.693505 159.6580215 2.203190743 -0.018682 107 63 3026 Ser2 SerAGA_ii 3_flank no 282 29.571582 286.560442 158.066012 2.198838496 -0.006877 107 64 11881 "rRNA(18S,5.8S,25S)" 25S yes 7956 6291 6309 31.560266 290.654141 161.1072035 2.207114959 0.049686 107 65 17525 YJL136C intron no 560 461 478 33.591134 327.387191 180.4891625 2.25645113 -0.171967 107 66 4009 SRP 5_flank no 875 31.639288 288.970601 160.3049445 2.204946918 0.062993 107 67 15341 YAL030W intron/exon no 213 161 178 29.701393 315.024249 172.362821 2.236443593 -0.161946 107 68 13017 MT_COX1 ai2 no 13084 4456 4475 31.78911 306.955273 169.3721915 2.228842107 -0.043238 107 69 14068 MT_COB bi4 no 7308 5206 5225 33.852593 327.053529 180.453061 2.256364253 -0.166237 107 70 14921 MT_Tyr 3_flank no 284 211 232 29.789392 319.284886 174.537139 2.241887853 -0.183591 107 71 21229 YOR234C spliced yes 40 13 30 30.720831 284.221595 157.471213 2.197201173 0.062741 107 72 4629 snR3 snR3 yes 395 61 77 35.619037 289.212324 162.4156805 2.210627956 0.158706 107 73 17979 YLR211C intron/exon no 159 101 122 29.442099 314.610806 172.0264525 2.235595233 -0.168684 107 74 6365 snR43 snR43 yes 409 66 83 31.30224 310.048537 170.6753885 2.2321709 -0.077816 107 75 4695 snR4 snR4 yes 386 11 25 584.578304 769.021164 676.799734 2.830460179 0.253639 107 76 2372 Phe4 PheGAA_iv 5_flank no 291 35.155678 291.576217 163.3659475 2.213161536 0.133167 107 77 6916 snR58 5_flank no 296 45.148112 313.838019 179.4930655 2.254047675 -0.015654 107 78 2359 Phe3 PheGAA_iii 3_flank no 291 31.230641 279.286265 155.258453 2.191055255 0.112175 107 79 15541 YBR078W intron no 430 181 195 33.219658 292.25949 162.739574 2.211493175 0.093054 107 80 2658 Pro4 ProTGG_iii 5_flank no 302 31.17089 310.979017 171.0749535 2.233186431 -0.087724 107 81 9963 RUF5-1 RUF5-1 yes 975 621 640 29.066982 282.363219 155.7151005 2.19233073 -0.013971 107 82 19340 YPL241C intron/exon no 180 121 137 30.855894 283.07477 156.965332 2.195803743 0.074766 107 83 3292 Thr2 ThrCGT tRNA/3_flank no 272 83.53735 312.811766 198.174558 2.297047898 0.209487 107 84 6424 snR45 5_flank no 372 34.337311 322.146245 178.241778 2.251009506 -0.122988 107 85 6436 snR45 snR45 yes 372 26 44 28.385892 286.946673 157.6662825 2.197738828 -0.072254 107 86 6743 snR49 3_flank no 365 28.30486 312.27401 170.289435 2.231187705 -0.196092 107 87 8834 LSR1 / U2 RNA U2 yes 1375 811 825 30.189964 297.908756 164.04936 2.21497454 -0.042057 107 88 2779 Pro6 ProTGG_v 5_flank/tRNA no 302 37.868393 293.173324 165.5208585 2.21885273 0.150444 107 89 3086 Ser3 SerCGA 3_flank no 301 28.235192 294.84814 161.541666 2.208284558 -0.116697 107 90 3319 Thr3 ThrTGT_i 5_flank no 272 26.266042 295.380531 160.8232865 2.206348933 -0.231425 107 91 42 Ala1 AlaAGC 3_flank no 273 33.795791 249.036397 141.416094 2.150498838 0.387479 107 92 11317 "rRNA(18S,5.8S,25S)" 25S yes 7956 3471 3489 2017.709628 1808.399839 1913.054734 3.281727396 0.438076 107 93 17592 YJL191W intron no 508 361 379 28.785003 294.113405 161.449204 2.208035908 -0.083409 107 94 17881 YLR048W intron no 459 141 157 35.332065 308.641136 171.9866005 2.235494612 -0.005325 107 95 21600 copy of SH6671 no 313 31.576828 322.134 176.855414 2.247618359 -0.157596 107 96 19743 Negative Control no 60 NA #VALUE! 35.496715 273.11848 154.3075975 2.18838731 0.286998 107 97 4861 snR8 snR8 yes 390 86 100 43.394425 285.250227 164.322326 2.215696574 0.241868 107 98 11373 "rRNA(18S,5.8S,25S)" 25S yes 7956 3751 3771 28.324797 297.707588 163.0161925 2.212230745 -0.124625 107 99 19477 ADH1 ADH1 yes 400 241 256 30.507383 247.627658 139.0675205 2.143225711 0.231799 107 100 6724 snR49 snR49 yes 365 146 162 88.637768 346.31619 217.476979 2.337413292 0.002651 107 101 9897 RUF5-1 RUF5-1 yes 975 291 303 38.873303 290.305273 164.589288 2.216401567 0.182741 107 102 6296 snR42 snR42 yes 551 261 278 41.102264 299.799746 170.451005 2.231599566 0.097913 107 103 20385 YFL034C-B spliced yes 40 5 22 31.260815 273.85898 152.5598975 2.183440388 0.139808 107 104 16191 YDR381C 5_exon no 294 1 17 33.379549 304.154706 168.7671275 2.227287859 0.007324 108 2 7134 snR63 snR63 yes 455 176 192 35.467573 297.141111 166.304342 2.220903588 0.090102 108 3 8368 snoRNA cluster 5 5_flank no 586 6 20 77.99067 332.424573 205.2076215 2.312193487 0.030182 108 4 20131 YDL082W spliced yes 40 21 38 33.22284 295.136446 164.179643 2.215319307 0.075118 108 5 16802 YGL137W intron no 300 121 133 33.098175 311.923146 172.5106605 2.236815938 -0.058509 108 6 2203 Met2 MetCAT_ii 3_flank no 272 38.617215 317.185267 177.901241 2.250178978 -0.065287 108 7 1431 Leu2 LeuCAA_ii 5_flank no 314 29.201364 299.901915 164.5516395 2.216302214 -0.089101 108 8 15538 YBR078W intron no 430 121 135 51.51155 301.592606 176.552078 2.246872834 0.120533 108 9 12214 5S rRNA NTS2 no 1420 26 41 85.630796 353.372176 219.501486 2.341437465 -0.064083 108 10 17203 YHR039C 5_exon no 262 1 20 33.528501 281.859919 157.69421 2.197815748 0.169426 108 11 7201 snR64 snR64 yes 301 71 87 39.752583 313.065492 176.4090375 2.24652083 -0.026113 108 12 11869 "rRNA(18S,5.8S,25S)" 25S yes 7956 6231 6247 4573.322471 10648.89579 7611.109131 3.881447949 -1.458345 108 13 10554 RUF8 RUF8 yes 1151 696 712 32.812037 277.760146 155.2860915 2.191132559 0.173848 108 14 16548 YER133W intron no 625 121 133 51.48279 316.799588 184.141189 2.265150943 -0.009232 108 15 1938 Lys1 LysCTT_i 3_flank no 272 31.56043 287.747006 159.653718 2.203179037 0.0682 108 16 4742 snR4 3_flank no 386 41.401002 310.137365 175.7691835 2.244942735 0.004543 108 17 5782 snR35 snR35 yes 740 96 108 73.305113 346.67685 209.9909815 2.322200643 -0.100668 108 18 6130 snR39B 5_flank/snR39B no 296 33.868521 306.69139 170.2799555 2.231163528 -0.00718 108 19 21316 YPL249C-A spliced yes 40 5 20 45.386099 323.504735 184.445417 2.265867869 -0.095706 108 20 8926 snR17a / U3a 5_flank no 690 27.403474 278.141042 152.772258 2.184044498 -0.087733 108 21 245 Arg3 ArgCCG 3_flank no 272 27.799101 315.42034 171.6097205 2.234541884 -0.233377 108 22 3446 Trp1 TrpCCA tRNA yes 306 i25 46 30.042996 322.719073 176.3810345 2.246451885 -0.194437 108 23 16734 YGL076C intron no 559 101 118 28.378697 276.544677 152.461687 2.183160721 -0.023479 108 24 11059 "rRNA(18S,5.8S,25S)" 18S yes 7956 2181 2197 17783.47691 21743.59009 19763.5335 4.295864594 -0.988955 108 25 10378 RUF7 3_flank no 700 32.488775 302.267142 167.3779585 2.223698266 0.007832 108 26 5555 snR33 snR33 yes 383 61 77 40.288457 285.783846 163.0361515 2.212283915 0.229865 108 27 17237 YHR079C 5_exon no 186 21 38 28.53867 292.51242 160.525545 2.205544153 -0.089495 108 28 18241 YML026C intron no 501 421 438 30.338342 280.360671 155.3495065 2.191309878 0.062023 108 29 16303 YDR450W intron no 535 341 355 39.746171 298.242815 168.994493 2.227872553 0.109398 108 30 2386 Phe4 PheGAA_iv 5_flank no 291 27.977512 310.589886 169.283699 2.22861514 -0.200203 108 31 4874 snR8 snR8 yes 390 151 163 76.133087 326.931905 201.532496 2.304345084 0.05842 108 32 6706 snR49 snR49 yes 365 56 73 27.529003 269.314134 148.4215685 2.171497017 -0.043667 108 33 12258 5S rRNA NTS2 no 1420 246 258 64.965572 335.251459 200.1085155 2.30126557 -0.073739 108 34 7208 snR64 3_flank no 301 29.300014 265.808679 147.5543465 2.168952007 0.078889 108 35 7297 snR66 5_flank no 286 53.96896 416.933355 235.4511575 2.37190083 -0.68922 108 36 5858 snR35 snR35 yes 740 476 492 35.44084 302.272973 168.8569065 2.227518829 0.047472 108 37 15045 MT_COX 2; ORF1 ORF1exon1 yes 2427 1276 1297 30.132561 353.634098 191.8833295 2.283037246 -0.407544 108 38 21505 copy of SH2797 no 302 38.32957 281.917315 160.1234425 2.204454918 0.252209 108 39 10434 RUF8 RUF8 yes 1151 96 115 29.949094 292.158967 161.0540305 2.206971598 -0.014539 108 40 13659 MT_ATP6 ATP6 yes 980 691 708 31.254614 324.494989 177.8748015 2.250114428 -0.17989 108 41 19911 YAL003W spliced yes 40 1 18 32.487088 334.051642 183.269365 2.263089875 -0.235607 108 42 16325 YDR471W intron no 484 261 277 41.704347 282.868945 162.286646 2.210282785 0.261664 108 43 4982 snR10 5_flank no 445 31.687917 280.564754 156.1263355 2.193476166 0.118949 108 44 3519 Tyr1 TyrGTA_i 3_flank no 289 72.343074 324.179119 198.2610965 2.297237504 0.054179 108 45 16793 YGL103W intron/exon no 611 541 562 31.701423 310.513772 171.1075975 2.233269293 -0.067344 108 46 20227 YDR129C spliced yes 40 13 34 31.698641 345.54304 188.6208405 2.275589676 -0.329365 108 47 5177 snR13 snR13 yes 324 41 55 35.741011 269.578581 152.659796 2.183724678 0.318179 108 48 9593 RUF3 RUF3 yes 631 351 366 33.740267 239.115612 136.4279395 2.13490332 0.439057 108 49 14928 MT_Asn 5_flank no 271 46 68 37.811602 302.681675 170.2466385 2.231078546 0.063563 108 50 3389 Thr4 ThrTGT_ii tRNA yes 272 31 47 35.824154 308.118087 171.9711205 2.235455521 0.004594 108 51 3896 RNaseP 3_flank no 569 31.820688 311.63163 171.726159 2.234836456 -0.072496 108 52 8382 snoRNA cluster 5 5_flank no 586 76 97 31.874941 367.360737 199.617839 2.30019935 -0.493141 108 53 14967 MT_COX 2; ORF1 COX2 no 2427 106 128 29.908851 334.068721 181.988786 2.260044628 -0.269972 108 54 19023 YOR182C intron no 511 341 358 32.001675 284.255468 158.1285715 2.199010348 0.105175 108 55 20271 YDR447C spliced yes 40 1 20 45.339629 336.502539 190.921084 2.280853892 -0.199944 108 56 11326 "rRNA(18S,5.8S,25S)" 25S yes 7956 3516 3533 35179.93182 14442.8977 24811.41476 4.394651529 0.525815 108 57 6888 snR56 snR56 yes 288 71 88 36.093226 288.73577 162.414498 2.210624794 0.168257 108 58 12444 5S rRNA NTS2 no 1420 1176 1188 111.968959 362.365535 237.167247 2.375054712 0.048624 108 59 450 Asp1 AspGTC_i tRNA/3_flank no 271 37.905929 275.174794 156.5403615 2.194626332 0.307432 108 60 1256 Ile2 IleTAT_i 5_flank no 333 29.689721 287.570141 158.629931 2.200385135 -0.005366 108 61 8864 LSR1 / U2 RNA U2 yes 1375 961 976 35.62325 287.53271 161.57798 2.208382174 0.173149 108 62 10359 RUF7 RUF7 yes 700 406 423 34.529346 292.895953 163.7126495 2.214082237 0.114563 108 63 15288 MT_9S 9S yes 701 496 522 29.474775 329.392329 179.433552 2.253903654 -0.25206 108 64 13058 MT_COX1 ai2 no 13084 5071 5090 29.46481 304.623779 167.0442945 2.222831647 -0.108485 108 65 409 Asn1 AsnGTT 3_flank no 274 37.49782 278.06512 157.78147 2.198055998 0.277127 108 66 9922 RUF5-1 RUF5-1 yes 975 416 433 33.53252 299.210743 166.3716315 2.221079275 0.049718 108 67 4710 snR4 snR4 yes 386 86 104 29.571756 312.936013 171.2538845 2.233640431 -0.154268 108 68 14203 MT_COB 3_flank no 7308 7231 7257 29.607827 316.872749 173.240288 2.238648897 -0.176013 108 69 14288 MT_VAR1 VAR1 yes 1467 526 552 27.607209 339.088722 183.3479655 2.263276095 -0.373829 108 70 14939 MT_Asn 3_flank no 271 211 237 27.573297 327.077355 177.325326 2.248770767 -0.30871 108 71 6689 snR49 5_flank no 365 29.498613 308.256405 168.877509 2.227571814 -0.129114 108 72 3253 Thr1 ThrAGT 3_flank no 273 29.390119 310.206743 169.798431 2.229933673 -0.144574 108 73 3849 RNaseP RNaseP yes 569 211 225 41.233377 301.3032 171.2682885 2.233676958 0.084227 108 74 20574 YHR012W spliced yes 40 9 26 29.188942 312.793049 170.9909955 2.232973241 -0.167033 108 75 1993 Lys3 LysTTT_i 5_flank no 296 41.05013 324.530867 182.7904985 2.261953617 -0.121105 108 76 6756 snR50 5_flank no 290 29.144287 293.731115 161.437701 2.208004964 -0.062404 108 77 12141 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7591 7611 29.173219 317.318139 173.245679 2.238662411 -0.19404 108 78 2728 Pro5 ProTGG_iv tRNA yes 303 22 37 33.169113 292.370043 162.769578 2.211573238 0.090767 108 79 3505 Tyr1 TyrGTA_i tRNA yes 289 50 62 55.116796 322.488057 188.8024265 2.276007572 -0.035061 108 80 5188 snR13 snR13 yes 324 96 115 33.092413 297.317613 165.205013 2.218023221 0.057454 108 81 19682 SIR1 2.4 SIR1 2.4 yes 401 361 376 29.016795 286.760122 157.8884585 2.198350385 -0.037232 108 82 3144 Ser4 SerGCT 3_flank no 301 28.85829 293.79366 161.325975 2.207704299 -0.07801 108 83 19103 YOR312C intron no 507 281 297 44.316139 311.368887 177.842513 2.250035587 0.003363 108 84 101 Ala2 AlaTGC 3_flank no 273 40.158661 339.759056 189.9588585 2.278659551 -0.250014 108 85 5972 snR36 snR36 yes 555 316 332 32.231165 272.939101 152.585133 2.183512221 0.187434 108 86 10873 "rRNA(18S,5.8S,25S)" 18S yes 7956 1251 1264 48849.95309 23186.06151 36018.0073 4.556519682 0.142422 108 87 3042 Ser3 SerCGA 5_flank no 301 43.642425 272.277323 157.959874 2.198546779 0.372441 108 88 12330 5S rRNA NTS2 no 1420 606 623 35.92645 288.038117 161.9822835 2.209467517 0.172318 108 89 13813 MT_COB bi2 no 7308 1381 1402 28.254981 329.50606 178.8805205 2.25256305 -0.29683 108 90 16553 YER133W intron no 625 221 239 47.503721 325.365085 186.434403 2.270526056 -0.099643 108 91 1770 Leu7 LeuTAA 3_flank no 284 30.131714 295.777686 162.9547 2.212066891 -0.030856 108 92 6512 snR46 snR46 yes 397 51 65 56.987703 291.602396 174.2950495 2.241285052 0.235456 108 93 2076 Lys4 LysTTT_ii intron/tRNA no 296 i9 39 31.904606 309.333118 170.618862 2.232027041 -0.053659 108 94 21817 copy of SH15702 no 521 66.402879 325.964506 196.1836925 2.292662904 0.004716 108 95 18771 YNL246W intron/exon no 195 141 157 33.777485 303.143762 168.4606235 2.226498404 0.020459 108 96 16371 YER003C exon/intron no 193 41 57 37.699931 326.709617 182.204774 2.260559752 -0.150147 108 97 3799 RNaseP 5_flank no 569 199.612831 323.392293 261.502562 2.417475948 0.730829 108 98 20554 YHL001W spliced yes 40 5 21 71.292721 362.242949 216.767835 2.33599484 -0.219573 108 99 19272 YPL143W intron no 625 321 337 30.597442 252.648112 141.622777 2.151133106 0.21383 108 100 16690 YGL030W intron no 330 261 280 30.805444 302.743052 166.774248 2.222128991 -0.05062 108 101 19066 YOR293W intron no 537 81 97 36.92889 377.798787 207.3638385 2.316733023 -0.553053 108 102 6873 snR56 5_flank/snR56 no 288 31.152851 349.16587 190.1593605 2.279117708 -0.362332 108 103 8216 snoRNA cluster 3; snR51 yes 743 591 606 65.706353 326.195652 195.9510025 2.29214749 -0.001453 108 104 5319 snR30 snR30 yes 801 446 463 33.413981 295.360744 164.3873625 2.215868428 0.07971 109 2 12840 MT_COX1 ai1 no 13084 1801 1818 31.383535 313.950376 172.6669555 2.237209232 -0.098133 109 3 11604 "rRNA(18S,5.8S,25S)" 25S yes 7956 4906 4924 1509.609298 7071.612084 4290.610691 3.632519111 -2.132232 109 4 6270 snR42 snR42 yes 551 131 150 36.725108 280.883406 158.804257 2.20086214 0.243584 109 5 21032 YMR125W spliced yes 40 1 20 163.605139 569.32467 366.4649045 2.56403239 -0.578695 109 6 1978 Lys2 LysCTT_ii 3_flank no 273 36.483185 385.547816 211.0155005 2.324314358 -0.610474 109 7 5883 snR35 3_flank no 740 32.704214 278.066586 155.3854 2.19141021 0.168381 109 8 6913 snR58 5_flank no 296 39.120723 279.81188 159.4663015 2.202668922 0.279195 109 9 7712 snoRNA cluster1 snR77 yes 1574 356 372 38.100154 353.112678 195.606416 2.291383096 -0.363251 109 10 2049 Lys4 LysTTT_ii 5_flank no 296 34.278158 277.933775 156.1059665 2.193419502 0.218343 109 11 19027 YOR182C intron no 511 421 445 31.352397 296.878624 164.1155105 2.215149628 0.003773 109 12 18830 YNL302C intron no 651 421 438 32.042293 303.755692 167.8989925 2.22504809 -0.015662 109 13 19668 SIR1 2.4 SIR1 2.4 yes 401 81 105 28.212799 328.778048 178.4954235 2.251627086 -0.294317 109 14 16188 YDR367W intron/exon no 201 141 161 31.601309 273.602328 152.6018185 2.183559709 0.157888 109 15 10869 "rRNA(18S,5.8S,25S)" 18S yes 7956 1231 1247 36.826087 294.563983 165.695035 2.219309495 0.127193 109 16 12089 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7331 7348 43.985431 330.179629 187.08253 2.272033234 -0.157318 109 17 7210 snR64 3_flank no 301 31.661277 288.393459 160.027368 2.204194262 0.067399 109 18 2336 Phe3 PheGAA_iii tRNA yes 291 6 22 72.062191 353.41145 212.7368205 2.327842664 -0.155142 109 19 7732 snoRNA cluster1 intergenic no 1574 456 475 28.780497 294.103104 161.4418005 2.208015992 -0.083606 109 20 11527 "rRNA(18S,5.8S,25S)" 25S yes 7956 4521 4539 2073.539758 11544.94124 6809.240501 3.833098674 -2.556873 109 21 9287 RUF1 RUF1 yes 750 11 27 29.68582 284.582482 157.134151 2.196270583 0.008337 109 22 9636 RUF4 5_flank no 988 30.060351 277.241075 153.650713 2.18653458 0.06262 109 23 10839 "rRNA(18S,5.8S,25S)" 18S yes 7956 1081 1099 175.800789 434.654826 305.2278075 2.484624097 0.022917 109 24 16069 YDR005C intron no 180 101 116 87.863945 340.768556 214.3162505 2.331055103 0.034895 109 25 15960 YDL130W intron no 401 181 198 30.544645 286.259869 158.402257 2.199761365 0.043579 109 26 7514 snR79 5_flank no 284 52.03294 315.638752 183.835846 2.264430198 0.003425 109 27 6290 snR42 snR42 yes 551 231 248 30.493595 299.978577 165.236086 2.218104899 -0.044355 109 28 15414 YBL059W 5_exon no 169 1 20 28.460221 291.24776 159.8539905 2.203723482 -0.088002 109 29 14641 MT_21S intronic no 4639 3826 3850 31.200422 295.977101 163.5887615 2.213753464 0.004298 109 30 18722 YNL130C 3_exon no 541 521 537 33.861244 304.128319 168.9947815 2.227873294 0.013471 109 31 1534 Leu3 LeuCAA_iii 3_flank no 314 37.412728 283.71449 160.563609 2.205647121 0.22648 109 32 16352 YDR500C intron no 439 321 339 35.268285 299.655206 167.4617455 2.223915614 0.066947 109 33 14591 MT_21S Sce1 no 4639 3076 3100 25.733975 301.065804 163.3998895 2.213251759 -0.288609 109 34 752 Gln4 GlnTTG_iii tRNA yes 272 31 47 105.321457 349.926132 227.6237945 2.357217659 0.085219 109 35 17217 YHR041C 5_exon no 201 21 37 52.297784 297.782952 175.040368 2.243138218 0.157811 109 36 19845 Negative Control no 60 NA #VALUE! 35.533883 319.405048 177.4694655 2.249123641 -0.092371 109 37 10033 RUF6 RUF6 yes 1251 11 27 34.001814 282.263649 158.1327315 2.199021773 0.181429 109 38 2862 Pro7 ProTGG_vi 3_flank no 303 38.304603 306.961701 172.633152 2.2371242 0.025513 109 39 9659 RUF4 RUF4 yes 988 71 89 28.903643 292.257225 160.580434 2.205692627 -0.068588 109 40 2667 Pro4 ProTGG_iii tRNA yes 302 1 13 244.822721 467.940693 356.381707 2.551915404 0.178321 109 41 3112 Ser4 SerGCT 5_flank no 301 31.336394 299.098917 165.2176555 2.218056455 -0.010479 109 42 633 Gln2 GlnTTG_i 5_flank no 272 31.447138 266.551345 148.9992415 2.173184058 0.185057 109 43 2281 Phe2 PheGAA_ii tRNA yes 292 1 15 92.70799 358.064873 225.3864315 2.352927768 -0.047035 109 44 2890 Pro8 ProTGG_vii 5_flank no 305 29.512266 279.23367 154.372968 2.188571254 0.024493 109 45 9874 RUF5-1 RUF5-1 yes 975 176 192 37.550944 263.539413 150.5451785 2.177666851 0.410306 109 46 16630 YFL039C intron/exon no 408 341 360 31.551658 317.654017 174.6028375 2.242051297 -0.123316 109 47 1466 Leu2 LeuCAA_ii tRNA/3_flank no 314 33.602838 289.885015 161.7439265 2.208827982 0.120049 109 48 15268 MT_9S 9S yes 701 196 220 29.638005 312.168361 170.903183 2.232750151 -0.14741 109 49 8962 snR17a / U3a U3a yes 690 96 112 38.785122 285.605499 162.1953105 2.210038293 0.22498 109 50 15049 MT_COX 2; ORF1 ORF1exon1 yes 2427 1336 1357 31.784829 301.654376 166.7196025 2.221986666 -0.011306 109 51 2665 Pro4 ProTGG_iii 5_flank/tRNA no 302 62.440837 330.117067 196.278952 2.29287373 -0.051684 109 52 5093 snR11 snR11 yes 458 66 82 41.093004 312.177039 176.6350215 2.247076816 -0.014501 109 53 15407 YBL059C exon/intron no 185 41 59 29.971838 270.794468 150.383153 2.177199186 0.089368 109 54 933 Gly1 GlyCCC_i 5_flank no 272 30.025929 285.662833 157.844381 2.198229126 0.020991 109 55 4804 snR5 snR5/3_flank no 404 32.091654 288.158371 160.1250125 2.204459177 0.082999 109 56 2283 Phe2 PheGAA_ii tRNA yes 292 11 25 80.322345 332.213979 206.268162 2.314432199 0.046036 109 57 20208 YDR059C spliced yes 40 13 28 36.079733 279.719744 157.8997385 2.198381411 0.246502 109 58 13722 MT_COB 5_flank no 7308 16 44 31.888854 318.871095 175.3799745 2.243980003 -0.128365 109 59 13146 MT_COX1 intronic no 13084 6391 6414 29.730389 303.681093 166.705741 2.221950556 -0.093409 109 60 534 Cys1 CysGCA 5_flank no 272 41.680753 320.059961 180.870357 2.257367396 -0.080883 109 61 21292 YPL175W spliced yes 40 13 29 33.48604 308.950169 171.2181045 2.233549685 -0.030018 109 62 8265 snoRNA cluster4 snR67 yes 638 111 125 51.4382 324.133255 187.7857275 2.273662581 -0.068731 109 63 21533 copy of SH3753 no 274 51.343658 277.406688 164.375173 2.215836223 0.341122 109 64 2575 Pro2 ProTGG_i 3_flank no 303 29.322524 324.85771 177.090117 2.248194325 -0.231945 109 65 11106 "rRNA(18S,5.8S,25S)" 18S yes 7956 2416 2429 33.302621 281.035048 157.1688345 2.196366433 0.167764 109 66 911 Glu3 GluTTC_ii tRNA/3_flank no 272 31.324458 307.006603 169.1655305 2.228311875 -0.058922 109 67 2687 Pro4 ProTGG_iii tRNA/3_flank no 302 31.337523 289.436992 160.3872575 2.205169861 0.050017 109 68 6854 snR56 5_flank no 288 39.320087 299.183563 169.251825 2.22853336 0.099614 109 69 4481 U3b (snR17b) 5_flank no 662 32.306501 273.367539 152.83702 2.184228561 0.186984 109 70 5000 snR10 snR10 yes 445 31 47 29.26927 251.937596 140.603433 2.147995925 0.139225 109 71 8437 snoRNA cluster 5 intergenic/snR128 no 586 351 368 31.174417 309.119072 170.1467445 2.230823644 -0.076561 109 72 2932 Pro8 ProTGG_vii 3_flank no 305 68.933173 357.051501 212.992337 2.328363979 -0.201322 109 73 10737 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 571 586 60.778684 295.623693 178.2011885 2.250910596 0.219113 109 74 13009 MT_COX1 ai2 no 13084 4336 4355 28.989815 296.682307 162.836061 2.211750588 -0.083973 109 75 11834 "rRNA(18S,5.8S,25S)" 25S yes 7956 6056 6069 7857.26379 6908.764544 7383.014167 3.868233702 -0.077717 109 76 16204 YDR381C 3_exon no 294 261 275 41.85495 287.310879 164.5829145 2.216384749 0.218458 109 77 10056 RUF6 RUF6 yes 1251 126 143 31.023998 319.353639 175.1888185 2.243506384 -0.143487 109 78 16795 YGL103W 3_exon no 611 581 597 2557.206727 2232.133066 2394.669897 3.379245655 0.410035 109 79 11747 "rRNA(18S,5.8S,25S)" 25S yes 7956 5621 5638 2922.16618 5737.329283 4329.747732 3.636462593 -0.974326 109 80 5534 snR33 5_flank no 383 30.98778 299.598763 165.2932715 2.218255175 -0.025235 109 81 598 Gln1 GlnCTG tRNA yes 272 31 47 30.883987 282.202291 156.543139 2.194634038 0.081001 109 82 12274 5S rRNA NTS2 no 1420 326 344 30.745157 307.474772 169.1099645 2.228169198 -0.08122 109 83 16101 YDR059C intron no 190 121 140 30.5874 288.564715 159.5760575 2.202967731 0.030274 109 84 2182 Met2 MetCAT_ii tRNA yes 272 41 55 30.429112 286.916654 158.672883 2.200502713 0.035402 109 85 12664 MT_15S 15S yes 1848 1711 1723 109.158523 327.55979 218.3591565 2.339171408 0.256299 109 86 20139 YDL108W spliced yes 40 5 21 45.622154 312.658871 179.1405125 2.253193812 -0.003841 109 87 21035 YMR125W spliced yes 40 13 29 92.603042 350.462852 221.532947 2.345438325 0.001438 109 88 20359 YER131W spliced yes 40 1 18 61.081763 320.195631 190.638697 2.280211061 0.017619 109 89 12034 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7056 7085 32.144237 310.565867 171.355052 2.233896913 -0.059841 109 90 9100 snR14 / U4 RNA U4 yes 360 116 135 26.436037 259.52888 142.9824585 2.15528276 -0.074077 109 91 18242 YML026C intron/exon no 501 441 460 30.324708 322.546895 176.4358015 2.246586715 -0.183708 109 92 13845 MT_COB bi2 no 7308 1861 1880 30.331233 279.923889 155.127561 2.190688964 0.063735 109 93 20475 YGL189C spliced yes 40 9 28 30.308586 304.989783 167.6491845 2.224401445 -0.081213 109 94 5860 snR35 snR35 yes 740 486 501 43.799616 309.497828 176.648722 2.2471105 0.018226 109 95 5929 snR36 snR36 yes 555 101 117 36.057896 313.447372 174.752634 2.24242373 -0.038426 109 96 16757 YGL087C 5_exon no 185 1 18 32.245404 309.44978 170.847592 2.232608862 -0.049643 109 97 18266 YML056C intron no 508 201 218 32.347826 320.432388 176.390107 2.246474224 -0.134519 109 98 8846 LSR1 / U2 RNA U2 yes 1375 871 887 32.500159 292.264271 162.382215 2.210538461 0.070159 109 99 2885 Pro8 ProTGG_vii 5_flank no 305 26.823959 267.405768 147.1148635 2.167656553 -0.081651 109 100 2938 Ser1 SerAGA_i 5_flank no 283 30.910165 353.717611 192.313888 2.284010648 -0.397578 109 101 16948 YGR027C intron no 412 321 342 31.086235 301.281504 166.1838695 2.220588867 -0.032235 109 102 2270 Phe2 PheGAA_ii 5_flank no 292 31.247465 287.097626 159.1725455 2.201868162 0.061953 109 103 5843 snR35 snR35 yes 740 401 420 33.402116 274.4874 153.944758 2.187364905 0.214282 109 104 8083 snoRNA cluster 2 3_flank no 739 651 672 31.510886 323.8102 177.660543 2.249590985 -0.171288 110 2 12030 "rRNA(18S,5.8S,25S)" 3_ETS/NTS1 no 7956 7036 7056 29.268584 305.74932 167.508952 2.224038022 -0.122253 110 3 12905 MT_COX1 ai2 no 13084 2776 2793 32.885179 313.458571 173.171875 2.238477359 -0.073317 110 4 9655 RUF4 RUF4 yes 988 51 65 49.574936 278.861482 164.218209 2.215421311 0.321782 110 5 14783 MT_ORF11; Leu; Gln 3_flank no 716 631 657 28.9396 306.967314 167.953457 2.225188947 -0.141376 110 6 429 Asp1 AspGTC_i 5_flank no 271 28.880669 409.876736 219.3787025 2.341194464 -0.808135 110 7 15685 YBR191W intron no 488 341 355 65.893485 354.732587 210.313036 2.322866193 -0.207091 110 8 20365 YER133W spliced yes 40 1 17 36.160352 296.491721 166.3260365 2.220960239 0.103518 110 9 5360 snR30 3_flank no 801 30.589685 433.922084 232.2558845 2.365966726 -0.959785 110 10 4880 snR8 snR8/3_flank no 390 30.496504 283.103928 156.800216 2.195346657 0.057136 110 11 14393 MT_21S 21S_rRNA3 yes 4639 106 127 190.695259 489.639697 340.167478 2.53169279 -0.141409 110 12 355 Arg5 ArgTCT 3_flank no 272 31.081588 254.755729 142.9186585 2.155088931 0.227161 110 13 10134 RUF6 RUF6 yes 1251 516 530 48.928874 527.930643 288.4297585 2.460040066 -1.306246 110 14 17013 YGR148C intron no 479 181 200 26.259569 334.477432 180.3685005 2.256160695 -0.400878 110 15 13906 MT_COB exon3/bi3 no 7308 2776 2793 29.73715 305.958375 167.8477625 2.224915556 -0.106927 110 16 4694 snR4 snR4 yes 386 6 22 71.061476 364.777828 217.919652 2.338296397 -0.237882 110 17 14613 MT_21S Sce1 no 4639 3406 3418 35.300853 260.768443 148.034648 2.170363375 0.366417 110 18 14749 MT_ORF11; Leu; Gln ORF11 yes 716 121 133 68.500897 338.774847 203.637872 2.30885855 -0.077308 110 19 12987 MT_COX1 ai2 no 13084 4006 4030 26.984727 311.397433 169.19108 2.228377463 -0.259799 110 20 21192 YOL120C spliced yes 40 17 29 46.086758 303.998431 175.0425945 2.243143742 0.074653 110 21 9868 RUF5-1 RUF5-1 yes 975 146 163 27.823225 284.060056 155.9416405 2.192962099 -0.089898 110 22 6892 snR56 3_flank no 288 28.168024 288.452249 158.3101365 2.199508723 -0.091194 110 23 21914 copy of SH19997 no 40 85.550765 338.233558 211.8921615 2.326114891 0.037992 110 24 17696 YKL006W intron no 498 421 447 30.477327 306.9562 168.7167635 2.227158236 -0.087248 110 25 15368 YBL027W intron no 484 121 138 37.344197 321.853413 179.598805 2.254303443 -0.10917 110 26 16782 YGL103W intron no 611 321 338 36.374206 291.801883 164.0880445 2.215076939 0.145363 110 27 5573 snR33 snR33 yes 383 151 170 38.289185 330.475841 184.382513 2.26571973 -0.180756 110 28 16728 YGL033W 3_exon no 170 141 158 34.327177 335.053855 184.690516 2.266444595 -0.22917 110 29 3275 Thr2 ThrCGT 5_flank no 272 30.343514 318.212481 174.2779975 2.241242561 -0.158151 110 30 11916 "rRNA(18S,5.8S,25S)" 25S yes 7956 6466 6481 413.421009 1055.821548 734.6212785 2.866063504 -0.695861 110 31 16601 YFL034C 3_exon no 421 381 400 29.999061 326.450056 178.2245585 2.250967548 -0.217129 110 32 19912 YAL003W spliced yes 40 5 22 29.813255 295.580315 162.696785 2.211378971 -0.040722 110 33 17461 YIL148W intron no 534 321 340 27.793319 309.469394 168.6313565 2.226938334 -0.205654 110 34 12560 MT_15S 15S yes 1848 151 165 692.262767 889.567582 790.9151745 2.898129908 0.211017 110 35 18788 YNL301C intron no 532 101 121 27.835873 272.213677 150.024775 2.176162984 -0.035994 110 36 8555 snR19 / U1 RNA U1 yes 868 271 287 43.286752 278.667771 160.9772615 2.206764535 0.306873 110 37 7598 snR189 snR189 yes 389 61 75 88.954848 355.429641 222.1922445 2.346728896 -0.054713 110 38 19313 YPL198W intron no 509 321 342 30.511119 323.25501 176.8830645 2.247686254 -0.181347 110 39 720 Gln3 GlnTTG_ii 3_flank no 272 48.508107 307.11326 177.8106835 2.249957851 0.057894 110 40 18457 YMR143W intron no 644 141 157 36.961968 315.05743 176.009699 2.2455366 -0.05048 110 41 10682 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 296 311 63.131798 347.491324 205.311561 2.312413405 -0.174176 110 42 15985 YDL136W intron no 505 281 301 29.272395 296.835483 163.053939 2.212331295 -0.069589 110 43 8968 snR17a / U3a U3a yes 690 126 145 29.301263 288.482923 158.892093 2.201102286 -0.03005 110 44 2091 Lys4 LysTTT_ii 3_flank no 296 33.296829 342.599295 187.948062 2.274037852 -0.294177 110 45 19867 Negative Control no 60 NA #VALUE! 33.322783 300.589291 166.956037 2.222602127 0.03576 110 46 20438 YGL087C spliced yes 40 1 20 33.375123 335.260049 184.317586 2.265566774 -0.233457 110 47 17758 YKL157W intron no 483 301 320 29.456364 291.2795 160.367932 2.205117529 -0.034693 110 48 9658 RUF4 RUF4 yes 988 66 80 86.944986 312.352468 199.648727 2.300266545 0.233409 110 49 1515 Leu3 LeuCAA_iii tRNA-intron no 314 i8 i23 31.663848 263.921505 147.7926765 2.169652914 0.20893 110 50 14262 MT_VAR1 5_flank no 1467 136 160 29.755455 336.479517 183.117486 2.262729817 -0.289871 110 51 13206 MT_COX1 ai4 no 13084 7291 7313 29.854463 329.888998 179.8717305 2.254962913 -0.241468 110 52 5667 snR34 snR34 yes 750 256 273 29.943806 349.30095 189.622378 2.277889589 -0.379677 110 53 21302 YPL218W spliced yes 40 5 22 34.095452 304.736155 169.4158035 2.22895392 0.011391 110 54 7159 snR63 3_flank no 455 34.151978 307.615264 170.883621 2.232700438 -0.011163 110 55 19811 Negative Control no 60 NA #VALUE! 34.167082 274.924962 154.546022 2.189057831 0.234994 110 56 12585 MT_15S 15S yes 1848 526 554 34.12891 304.521365 169.3251375 2.228721437 0.013539 110 57 6939 snR58 snR58 yes 296 56 68 44.245565 303.219599 173.732582 2.239881274 0.075882 110 58 8613 snR19 / U1 RNA U1 yes 868 561 577 34.907384 307.637945 171.2726645 2.233688054 -0.002286 110 59 17707 YKL081W intron no 426 141 164 33.725593 330.935768 182.3306805 2.260859753 -0.196956 110 60 1271 Ile2 IleTAT_i intron yes 333 i14 i29 35.567042 291.17109 163.369066 2.213169826 0.14142 110 61 19342 YPL241C 3_exon no 180 161 177 37.412995 317.911875 177.662435 2.24959561 -0.074573 110 62 2094 Lys4 LysTTT_ii 3_flank no 296 33.29678 300.395959 166.8463695 2.222316761 0.037027 110 63 10119 RUF6 RUF6 yes 1251 441 457 35.203589 288.494213 161.848901 2.209109755 0.159992 110 64 3653 Val2 ValAAC_ii tRNA yes 274 6 18 44.098346 296.388004 170.243175 2.23106971 0.137914 110 65 463 Asp1 AspGTC_i 3_flank no 271 55.018376 314.497096 184.757736 2.266602632 0.029361 110 66 13825 MT_COB bi2 no 7308 1561 1575 67.963926 309.760613 188.8622695 2.276145204 0.140204 110 67 8111 snoRNA cluster 3; 5_flank no 743 66 85 33.051296 292.453206 162.752251 2.211527004 0.086528 110 68 9634 RUF4 5_flank no 988 38.928272 285.979258 162.453765 2.210729781 0.223273 110 69 12404 5S rRNA NTS2 no 1420 976 992 65.644141 328.970091 197.307116 2.295142749 -0.022737 110 70 4240 telomerase RNA telomerase yes 1501 236 250 60.514046 326.141233 193.3276395 2.286293948 -0.032233 110 71 11565 "rRNA(18S,5.8S,25S)" 25S yes 7956 4711 4726 556.656787 813.67217 685.1644785 2.835794839 0.099684 110 72 7060 snR62 snR62/3_flank no 300 28.779617 310.812517 169.796067 2.229927626 -0.170085 110 73 18214 YML025C intron no 199 81 97 34.605242 271.781214 153.193228 2.185239567 0.269475 110 74 1050 Gly3 GlyGCC 5_flank/tRNA no 271 32.651036 306.012576 169.331806 2.22873854 -0.016863 110 75 2334 Phe3 PheGAA_iii 5_flank/tRNA no 291 42.500609 294.049412 168.2750105 2.226019626 0.155081 110 76 19154 YPL075W intron no 851 601 615 42.581049 307.283508 174.9322785 2.242869953 0.033903 110 77 17532 YJL177W exon/intron no 417 41 58 30.845561 304.431733 167.638647 2.224374147 -0.059503 110 78 4129 SRP SRP yes 875 536 548 443.02454 700.969908 571.997224 2.757393921 0.08662 110 79 7354 snR68 5_flank/snR68 no 336 30.874373 321.038229 175.956301 2.245404824 -0.15849 110 80 234 Arg3 ArgCCG tRNA yes 272 26 40 44.616441 309.529569 177.073005 2.248152358 0.020576 110 81 17351 YIL018W intron no 500 421 438 28.802938 284.866305 156.8346215 2.19544194 -0.039902 110 82 12246 5S rRNA NTS2 no 1420 186 203 36.525159 298.963316 167.7442375 2.22464761 0.087159 110 83 19982 YBL091C-A spliced yes 40 9 23 52.042336 311.98881 182.015573 2.260108547 0.033588 110 84 11350 "rRNA(18S,5.8S,25S)" 25S yes 7956 3636 3651 290.782938 887.279458 589.031198 2.770138298 -0.806684 110 85 920 Glu3 GluTTC_ii 3_flank no 272 28.383785 300.03753 164.2106575 2.21540134 -0.131774 110 86 4061 SRP SRP yes 875 196 213 63.166339 374.608953 218.887646 2.340221251 -0.358981 110 87 21068 YMR225C spliced yes 40 1 17 32.123026 291.638996 161.881011 2.209195908 0.061914 110 88 7227 snR65 5_flank no 300 171.524962 390.135844 280.830403 2.448444123 0.219958 110 89 21233 YOR293W spliced yes 40 5 23 28.411212 288.42227 158.416741 2.199801075 -0.077699 110 90 13463 MT_COX1 intronic no 13084 11146 11161 44.072116 300.742293 172.4072045 2.23655541 0.097825 110 91 18341 YML124C intron no 398 141 157 42.273088 288.493209 165.3831485 2.218491256 0.207891 110 92 1538 Leu3 LeuCAA_iii 3_flank no 314 48.243843 298.190548 173.2171955 2.238591003 0.134384 110 93 21923 copy of SH20203 no 40 100.807929 350.330399 225.569164 2.35327973 0.054406 110 94 8641 snR19 / U1 RNA 3_flank no 868 28.674311 300.479546 164.5769285 2.216368953 -0.117911 110 95 11538 "rRNA(18S,5.8S,25S)" 25S yes 7956 4576 4589 999.464875 1357.281153 1178.373014 3.071282788 -0.024688 110 96 15665 YBR189W intron no 513 441 463 32.532981 285.130498 158.8317395 2.200937292 0.116711 110 97 1533 Leu3 LeuCAA_iii 3_flank no 314 40.398793 302.386585 171.392689 2.233992293 0.072331 110 98 5146 snR11 3_flank no 458 30.740369 276.044234 153.3923015 2.185803564 0.103138 110 99 16969 YGR034W intron no 454 161 179 28.923481 274.295203 151.609342 2.180725963 0.016942 110 100 4097 SRP SRP yes 875 376 390 44.944596 321.745512 183.345054 2.263269199 -0.083713 110 101 20615 YHR097C spliced yes 40 1 13 59.296135 343.004317 201.150226 2.303520525 -0.166957 110 102 20818 YKL190W spliced yes 40 17 38 31.412362 343.987128 187.699745 2.273463683 -0.321968 110 103 7641 snoRNA cluster1 5_flank no 1574 1 20 35.624663 322.936537 179.2806 2.253533297 -0.122861 110 104 18090 YLR367W 5_exon no 583 21 40 33.759968 313.862245 173.8111065 2.240077524 -0.065627 111 2 16372 YER003C intron no 193 61 82 30.947819 293.562699 162.255259 2.210198782 0.01089 111 3 19587 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 41 60 31.74061 349.421919 190.5812645 2.280080204 -0.356404 111 4 17156 YHR012W 3_exon no 219 181 202 30.696812 279.090958 154.893885 2.190034273 0.086319 111 5 11968 "rRNA(18S,5.8S,25S)" 25S yes 7956 6726 6743 30166.30854 25327.87598 27747.09226 4.443217478 -0.59515 111 6 13097 MT_COX1 ai3 no 13084 5656 5680 30.570378 364.318081 197.4442295 2.295444446 -0.475129 111 7 4852 snR8 snR8 yes 390 41 57 36.04948 346.072998 191.061239 2.28117259 -0.315112 111 8 18177 YLR448W intron no 484 321 337 37.864157 282.618018 160.2410875 2.204773884 0.241016 111 9 11105 "rRNA(18S,5.8S,25S)" 18S yes 7956 2411 2426 41.49305 370.210823 205.8519365 2.313554957 -0.473731 111 10 3395 Thr4 ThrTGT_ii tRNA/3_flank no 272 104.997493 344.793499 224.895496 2.351980758 0.116347 111 11 21705 copy of SH11080 no 7956 9076.235887 9386.330908 9231.283398 3.965262084 -0.412734 111 12 12227 5S rRNA NTS2 no 1420 91 106 64.786821 279.432135 172.109478 2.235804787 0.383877 111 13 10971 "rRNA(18S,5.8S,25S)" 18S yes 7956 1741 1759 131.115642 455.252007 293.1838245 2.467140006 -0.320059 111 14 13678 MT_ORF 5 5_flank no 331 16 42 29.02337 388.658416 208.840893 2.319815542 -0.659163 111 15 18175 YLR448W intron no 484 281 297 38.828686 301.354201 170.0914435 2.230682467 0.078268 111 16 19009 YOR182C intron no 511 61 78 38.890851 335.858339 187.374595 2.272710707 -0.222909 111 17 5904 snR36 5_flank no 555 28.290533 300.0969 164.1937165 2.215356533 -0.137151 111 18 1 Ala1 AlaAGC 5_flank no 273 41.324511 300.449079 170.886795 2.232708505 0.09236 111 19 5766 snR35 snR35 yes 740 16 32 41.869743 293.696878 167.7833105 2.224748759 0.157067 111 20 8807 LSR1 / U2 RNA U2 yes 1375 676 692 44.369488 290.666072 167.51778 2.224060909 0.19226 111 21 14443 MT_21S 21S_rRNA3 yes 4639 856 881 26.003724 307.006824 166.505274 2.221427994 -0.298428 111 22 15473 YBL091C 5_exon no 188 21 37 62.93822 361.522306 212.230263 2.326807312 -0.273084 111 23 12103 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7401 7418 36.161816 273.611567 154.8866915 2.190014103 0.302007 111 24 12319 5S rRNA NTS2 no 1420 551 568 30.480835 291.946329 161.213582 2.207401628 0.005179 111 25 21668 copy of SH9403 no 750 55.917854 279.615236 167.766545 2.224705361 0.340425 111 26 10786 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 816 836 101.400471 401.928049 251.66426 2.400821544 -0.247264 111 27 10544 RUF8 RUF8 yes 1151 646 666 28.582507 298.469716 163.5261115 2.21358711 -0.113957 111 28 5988 snR36 3_flank no 555 28.555106 283.408444 155.981775 2.193073858 -0.046497 111 29 3828 RNaseP RNaseP yes 569 106 118 70.546317 320.433633 195.489975 2.291124491 0.072295 111 30 19460 CYC1 CYC1 yes 400 301 316 30.307446 271.275621 150.7915335 2.178376958 0.104305 111 31 5492 snR32 snR32 yes 388 121 133 66.863478 333.866327 200.3649025 2.301821649 -0.051457 111 32 6881 snR56 snR56 yes 288 36 53 28.067789 273.278375 150.673082 2.178035672 -0.025665 111 33 19863 Negative Control no 60 NA #VALUE! 35.540104 285.675305 160.6077045 2.205766375 0.188197 111 34 5654 snR34 snR34 yes 750 191 212 26.000576 303.373212 164.686894 2.216659039 -0.282761 111 35 16844 YGL178W intron no 740 661 680 29.838553 281.993587 155.91607 2.192890879 0.02848 111 36 7236 snR65 5_flank no 300 56.869135 337.234108 197.0516215 2.294580013 -0.138975 111 37 2420 Phe4 PheGAA_iv 3_flank no 291 41.805371 315.534732 178.6700515 2.252051763 -0.041399 111 38 10548 RUF8 RUF8 yes 1151 666 687 28.561386 258.77003 143.665708 2.157353117 0.066045 111 39 16343 YDR500C intron no 439 141 162 28.788981 336.427083 182.608032 2.261519876 -0.31555 111 40 12428 5S rRNA NTS2 no 1420 1096 1115 32.893323 263.964722 148.4290225 2.171518827 0.267902 111 41 7606 snR189 snR189 yes 389 101 118 33.006062 262.792173 147.8991175 2.169965583 0.279147 111 42 11589 "rRNA(18S,5.8S,25S)" 25S yes 7956 4831 4846 398.051314 552.023708 475.037511 2.676727905 0.380512 111 43 4359 telomerase RNA telomerase yes 1501 831 847 37.019613 266.528595 151.774104 2.181197678 0.375832 111 44 18400 YMR125W intron no 422 141 156 54.942505 317.993582 186.4680435 2.270604414 0.000331 111 45 8831 LSR1 / U2 RNA U2 yes 1375 796 813 33.098453 310.464343 171.781398 2.234976133 -0.046921 111 46 9595 RUF3 RUF3 yes 631 361 382 33.176119 281.599611 157.387865 2.196971244 0.160094 111 47 10128 RUF6 RUF6 yes 1251 486 502 45.289698 305.148719 175.2192085 2.243581714 0.061808 111 48 14765 MT_ORF11; Leu; Gln ORF11 yes 716 361 389 29.448627 274.415134 151.9318805 2.181648913 0.044318 111 49 13505 MT_COX1 intronic no 13084 11776 11798 37.643742 353.160517 195.4021295 2.290929292 -0.365339 111 50 6865 snR56 5_flank no 288 73.575302 306.854773 190.2150375 2.279244847 0.196706 111 51 20358 YER117W spliced yes 40 25 40 40.023464 309.390557 174.7070105 2.242310332 0.0075 111 52 9674 RUF4 RUF4 yes 988 146 161 58.62187 286.76906 172.695465 2.237280933 0.287112 111 53 13712 MT_Glu (and 5_flank processing site for COB) 3_flank no 368 211 235 28.009439 291.079371 159.544405 2.202881579 -0.112039 111 54 12818 MT_COX1 ai1 no 13084 1471 1493 30.091087 288.772934 159.4320105 2.202575523 0.00994 111 55 15316 YAL003W intron no 466 121 138 36.232033 317.492278 176.8621555 2.247634914 -0.073812 111 56 14668 MT_21S 21S_rRNA4 yes 4639 4231 4257 30.055912 328.702659 179.3792855 2.25377229 -0.227922 111 57 15704 YBR220C intron no 521 241 260 29.970059 306.263421 168.11674 2.22561096 -0.100615 111 58 6380 snR43 snR43 yes 409 141 159 29.846794 294.123309 161.9850515 2.209474938 -0.030449 111 59 1807 Leu8 LeuTAG_i tRNA yes 301 41 49 32.726411 284.230319 158.478365 2.199969982 0.128723 111 60 21835 copy of SH16600 no 421 46.661394 284.409789 165.5355915 2.218891385 0.259117 111 61 18724 YNL147W 5_exon no 220 21 39 35.418748 305.142699 170.2807235 2.231165487 0.023862 111 62 7794 snoRNA cluster1 snR75 yes 1574 766 782 33.292874 293.915095 163.6039845 2.213793877 0.084952 111 63 16708 YGL031C intron no 556 301 317 51.126121 290.176769 170.651445 2.23210997 0.220549 111 64 1926 Lys1 LysCTT_i 3_flank no 272 33.103234 327.453194 180.278214 2.255943247 -0.178524 111 65 9288 RUF1 RUF1 yes 750 16 33 29.07345 307.218786 168.146118 2.225686845 -0.138066 111 66 12962 MT_COX1 ai2 no 13084 3631 3650 30.959705 335.261103 183.110404 2.262713021 -0.264478 111 67 547 Cys1 CysGCA tRNA yes 272 36 53 36.753566 273.063047 154.9083065 2.190074706 0.313687 111 68 10300 RUF7 RUF7 yes 700 111 130 30.744301 301.392801 166.068551 2.220287396 -0.044465 111 69 5141 snR11 3_flank no 458 34.519525 294.939279 164.729402 2.216771122 0.097264 111 70 20453 YGL137W spliced yes 40 13 35 28.567672 301.302952 164.935312 2.217313646 -0.127345 111 71 12481 5S rRNA 5S/NTS1 no 1420 1361 1382 30.417615 281.06845 155.7430325 2.192408627 0.06272 111 72 20078 YCR031C spliced yes 40 13 29 30.371212 285.383444 157.877328 2.198319768 0.04006 111 73 21530 copy of SH3750 no 274 30.375138 320.648157 175.5116475 2.244305943 -0.171103 111 74 5728 snR34 3_flank no 750 80.078117 321.573917 200.826017 2.302819975 0.12264 111 75 21736 copy of SH12341 no 1420 38.286276 287.712197 162.9992365 2.21218557 0.201458 111 76 4234 telomerase RNA telomerase yes 1501 206 222 30.596172 231.527756 131.061964 2.117476672 0.311939 111 77 7044 snR62 snR62 yes 300 11 32 30.66867 298.076448 164.372559 2.215829316 -0.026665 111 78 11579 "rRNA(18S,5.8S,25S)" 25S yes 7956 4781 4798 45.419855 319.828945 182.6244 2.261558802 -0.065358 111 79 14881 MT_Ala tRNA yes 276 121 136 34.626478 288.047408 161.336943 2.207733824 0.156978 111 80 21856 copy of SH17801 no 176 28.737609 304.232629 166.485119 2.221375421 -0.132214 111 81 15711 YBR220C intron no 521 381 396 73.948994 346.390235 210.1696145 2.322569928 -0.094429 111 82 12379 5S rRNA NTS2 no 1420 851 865 60.988282 318.56434 189.776311 2.278242 0.029987 111 83 4649 snR3 snR3 yes 395 161 176 35.40155 274.61685 155.0092 2.190357475 0.274121 111 84 20766 YJR145C spliced yes 40 21 40 30.464712 318.864546 174.664629 2.242204966 -0.157758 111 85 594 Gln1 GlnCTG tRNA yes 272 11 28 30.392034 286.086276 158.239155 2.199313955 0.03785 111 86 5583 snR33 3_flank no 383 28.412666 302.596275 165.5044705 2.218809729 -0.141502 111 87 347 Arg5 ArgTCT tRNA/3_flank no 272 30.345381 282.005584 156.1754825 2.193612856 0.054593 111 88 4520 U3b (snR17b) U3b yes 662 156 172 69.446922 326.306962 197.876942 2.29639519 0.020917 111 89 2686 Pro4 ProTGG_iii tRNA/3_flank no 302 48.129392 272.756053 160.4427225 2.205320023 0.37829 111 90 14369 MT_ORF9; ORF10 intergenic no 578 301 323 26.824688 293.008435 159.9165615 2.203893443 -0.187987 111 91 7679 snoRNA cluster1 intergenic no 1574 191 211 43.687073 342.442056 193.0645645 2.28570257 -0.255251 111 92 3811 RNaseP RNaseP yes 569 21 38 32.942735 306.74639 169.8445625 2.230051648 -0.019099 111 93 19749 Negative Control no 60 NA #VALUE! 32.957223 270.715974 151.8365985 2.181376466 0.225753 111 94 17199 YHR021C intron no 650 561 578 28.97191 272.953184 150.962547 2.178869215 0.026073 111 95 8538 snR19 / U1 RNA U1 yes 868 186 206 30.868509 318.761952 174.8152305 2.242579267 -0.143416 111 96 6021 snR37 snR37 yes 586 21 43 30.823259 323.420548 177.1219035 2.248272271 -0.177448 111 97 2731 Pro5 ProTGG_iv tRNA/intron no 303 37 i13 57.451502 270.037253 163.7443775 2.214166397 0.439079 111 98 7701 snoRNA cluster1 intergenic no 1574 301 322 28.950903 300.516332 164.7336175 2.216782236 -0.103159 111 99 11072 "rRNA(18S,5.8S,25S)" 18S yes 7956 2246 2264 35.009942 295.259811 165.1348765 2.217838806 0.100421 111 100 19518 ACT1 ACT1 yes 401 261 277 55.225202 315.298247 185.2617245 2.267785702 0.023889 111 101 9148 snR7 U5 RNA U5 yes 415 11 26 49.54578 323.302665 186.4242225 2.27050234 -0.07252 111 102 2498 Pro1 ProAGG 5_flank no 272 29.613454 255.063932 142.338693 2.153322974 0.146157 111 103 16865 YGL187C intron no 442 161 179 31.817507 289.461029 160.639268 2.205851716 0.065736 111 104 4002 SRP 5_flank no 875 38.179746 284.132992 161.156369 2.207247474 0.231241 112 2 17458 YIL148W intron no 534 261 278 32.641517 320.146958 176.3942375 2.246484393 -0.128574 112 3 1282 Ile2 IleTAT_i tRNA yes 333 46 60 45.527212 319.177684 182.352448 2.260911598 -0.059397 112 4 6911 snR58 5_flank no 296 35.158905 279.605188 157.3820465 2.196955188 0.233795 112 5 15095 MT_COX 2; ORF1 ORF2exon2 yes 2427 2026 2050 32.328315 301.201074 166.7646945 2.222104112 0.009167 112 6 7579 snR189 5_flank no 389 32.298197 315.344337 173.821267 2.240102911 -0.095598 112 7 13502 MT_COX1 intronic no 13084 11731 11749 34.121717 379.484279 206.802998 2.31555683 -0.576523 112 8 5198 snR13 3_flank no 324 31.378194 262.510453 146.9443235 2.167152814 0.201988 112 9 19310 YPL198W intron no 509 261 282 28.622513 311.062125 169.842319 2.230045911 -0.177279 112 10 6359 snR43 snR43 yes 409 36 48 29.482718 259.089224 144.285971 2.159224106 0.120858 112 11 4185 telomerase RNA 5_flank no 1501 33.943156 245.771558 139.857357 2.145685317 0.411812 112 12 18478 YMR143W intron no 644 561 580 32.016371 281.458817 156.737594 2.195173176 0.123859 112 13 16697 YGL031C intron no 556 81 95 49.136724 346.606238 197.871481 2.296383204 -0.255843 112 14 7265 snR65 3_flank no 300 30.054513 289.813314 159.9339135 2.203940564 0.003262 112 15 8861 LSR1 / U2 RNA U2 yes 1375 946 958 35.465509 298.40602 166.9357645 2.22254939 0.07958 112 16 9289 RUF1 RUF1 yes 750 21 38 28.34775 278.115315 153.2315325 2.185348145 -0.032716 112 17 16387 YER007C 3_exon no 203 181 198 28.528975 282.925355 155.727165 2.192364377 -0.045648 112 18 19718 Negative Control no 60 NA #VALUE! 30.638088 293.47187 162.054979 2.209662379 0.000957 112 19 17517 YJL136C intron no 560 301 318 32.871126 318.518928 175.695027 2.244759469 -0.113072 112 20 8748 LSR1 / U2 RNA U2 yes 1375 381 393 42.744965 290.769368 166.7571665 2.222084507 0.186947 112 21 6568 snR47 5_flank no 299 29.922236 298.201939 164.0620875 2.215008233 -0.05317 112 22 18604 YNL069C intron no 549 241 260 30.221703 303.947285 167.084494 2.222936148 -0.077906 112 23 19783 Negative Control no 60 NA #VALUE! 28.484387 292.459206 160.4717965 2.205398715 -0.092211 112 24 6990 snR60 snR60 yes 304 31 48 32.457333 319.320949 175.889141 2.245239028 -0.124532 112 25 4689 snR4 5_flank no 386 32.491573 304.098218 168.2948955 2.226070944 -0.003381 112 26 15353 YBL026W intron/exon no 228 41 55 59.890754 345.207963 202.5493585 2.306530872 -0.179588 112 27 16015 YDL137W intron/exon no 432 381 402 53.995265 384.709378 219.3523215 2.341142235 -0.490512 112 28 16954 YGR029W exon/intron no 183 41 57 32.482756 296.15247 164.317613 2.215684117 0.045266 112 29 141 Arg1 ArgACG_i 3_flank no 273 34.373982 294.718814 164.546398 2.21628838 0.097363 112 30 5306 snR30 snR30 yes 801 381 401 28.460524 297.461163 162.9608435 2.212083264 -0.116095 112 31 2628 Pro3 ProTGG_ii tRNA yes 303 61 73 51.507646 293.70458 172.606113 2.237056173 0.190476 112 32 15235 MT_COX3 3_flank no 1010 946 972 26.26105 321.94371 174.10238 2.240804708 -0.346389 112 33 19118 YPL031C intron no 202 81 100 31.854707 327.269831 179.562269 2.254215085 -0.193058 112 34 7267 snR65 3_flank no 300 29.888922 276.167126 153.028024 2.18477097 0.058902 112 35 16994 YGR118W intron no 420 221 237 35.645036 281.185756 158.415396 2.199797387 0.228565 112 36 5510 snR32 3_flank no 388 32.93221 272.050861 152.4915355 2.183245738 0.215904 112 37 9139 snR7 U5 RNA 5_flank no 415 32.192713 303.286136 167.7394245 2.224635149 -0.007923 112 38 794 Glu1 GluCTC 5_flank/tRNA no 272 42.16584 298.27151 170.218675 2.231007206 0.114525 112 39 3939 RNase MRP RNaseMRP yes 540 111 132 28.743306 328.438786 178.591046 2.251859681 -0.272963 112 40 13260 MT_COX1 ai4 no 13084 8101 8125 28.871457 291.61892 160.2451885 2.204784998 -0.067407 112 41 9327 RUF1 RUF1 yes 750 211 227 61.566282 368.481892 215.024087 2.332487112 -0.329348 112 42 21690 copy of SH10450 no 1151 40.75233 276.431193 158.5917615 2.200280623 0.32388 112 43 717 Gln3 GlnTTG_ii 3_flank no 272 34.811347 324.811703 179.811525 2.254817524 -0.141147 112 44 13858 MT_COB bi2 no 7308 2056 2077 30.872815 315.444194 173.1585045 2.238443826 -0.124006 112 45 13118 MT_COX1 ai3 no 13084 5971 5993 32.879748 323.16907 178.024409 2.250479553 -0.148782 112 46 11733 "rRNA(18S,5.8S,25S)" 25S yes 7956 5551 5564 42821.7033 17268.94346 30045.32338 4.477776883 0.469898 112 47 10016 RUF6 5_flank no 1251 58.081938 363.343715 210.7128265 2.323690973 -0.319141 112 48 10175 RUF6 RUF6 yes 1251 721 733 37.340255 253.631176 145.4857155 2.162820354 0.476161 112 49 4326 telomerase RNA telomerase yes 1501 666 684 43.628758 323.639891 183.6343245 2.263953862 -0.104888 112 50 12326 5S rRNA NTS2 no 1420 586 603 31.741487 278.714909 155.228198 2.190970616 0.132892 112 51 14145 MT_COB intronic no 7308 6361 6375 35.966288 284.51496 160.240624 2.204772627 0.203192 112 52 10643 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 101 124 29.989063 356.924851 193.456957 2.286584352 -0.432411 112 53 12425 5S rRNA NTS2 no 1420 1081 1097 78.391125 320.993802 199.6924635 2.300361675 0.116612 112 54 20180 YDL189W spliced yes 40 21 39 42.395843 292.019804 167.2078235 2.223256594 0.174208 112 55 7894 snoRNA cluster1 intergenic no 1574 1266 1283 36.240286 276.652358 156.446322 2.194365357 0.275591 112 56 10054 RUF6 RUF6 yes 1251 116 132 36.194148 280.593532 158.39384 2.199738288 0.240105 112 57 11501 "rRNA(18S,5.8S,25S)" 25S yes 7956 4391 4406 32.025674 290.215323 161.1204985 2.207150797 0.067754 112 58 5225 snR30 5_flank no 801 29.884169 339.097817 184.490993 2.265975168 -0.30724 112 59 15614 YBR181C intron no 452 61 77 41.903096 301.719719 171.8114075 2.235051996 0.081838 112 60 5774 snR35 snR35 yes 740 56 70 35.665624 301.409788 168.537706 2.226697078 0.057157 112 61 21506 copy of SH2798 no 302 55.662848 273.183321 164.4230845 2.215962791 0.400734 112 62 13160 MT_COX1 intronic no 13084 6601 6622 29.395034 341.728821 185.5619275 2.268488875 -0.333174 112 63 14849 MT_Ser2; Arg2 5_flank no 360 1 29 27.306752 324.220673 175.7637125 2.244929217 -0.302702 112 64 9347 RUF1 RUF1 yes 750 311 328 37.118096 297.344022 167.231059 2.22331694 0.107248 112 65 17080 YGR225W 3_exon no 193 181 193 64.820082 319.631279 192.2256805 2.283811407 0.043281 112 66 20477 YGL189C spliced yes 40 17 35 36.800399 335.178134 185.9892665 2.269487882 -0.223854 112 67 384 Asn1 AsnGTT tRNA yes 274 1 13 88.553021 325.486317 207.019669 2.31601161 0.146718 112 68 17671 YKL006C intron no 241 161 177 36.369082 302.696783 169.5329325 2.229254074 0.054715 112 69 7661 snoRNA cluster1 snR78 yes 1574 101 117 65.331335 329.979525 197.65543 2.29590875 -0.032296 112 70 6986 snR60 snR60 yes 304 11 28 105.901044 401.593936 253.74749 2.404401755 -0.215411 112 71 21336 YPR063C spliced yes 40 13 30 28.15246 310.488285 169.3203725 2.228709215 -0.19117 112 72 6049 snR37 snR37 yes 586 161 183 28.119386 312.631518 170.375452 2.231407021 -0.205063 112 73 14823 MT_Lys; Arg1; Gly tRNAGly yes 682 526 542 33.899712 287.941002 160.920357 2.206610987 0.141623 112 74 21066 YMR201C spliced yes 40 17 32 57.208913 298.539421 177.874167 2.250112879 0.175745 112 75 8335 snoRNA cluster4 snR53 yes 638 461 477 59.416451 315.909548 187.6629995 2.273378654 0.041828 112 76 10329 RUF7 RUF7 yes 700 256 275 30.438431 293.791192 162.1148115 2.209822696 -0.007873 112 77 6944 snR58 snR58/3_flank no 296 28.594227 282.764064 155.6791455 2.192230439 -0.041339 112 78 20539 YGR183C spliced yes 40 13 32 30.588463 304.20312 167.3957915 2.223744535 -0.06686 112 79 16566 YER133W intron no 625 481 497 36.453213 313.454731 174.953972 2.242923807 -0.037496 112 80 7194 snR64 snR64 yes 301 36 50 715.068199 813.971705 764.519952 2.883388824 0.399052 112 81 2926 Pro8 ProTGG_vii 3_flank no 305 34.477422 297.899044 166.188233 2.22060027 0.072082 112 82 8601 snR19 / U1 RNA U1 yes 868 501 520 28.627764 312.353707 170.4907355 2.231700784 -0.184716 112 83 8508 snR19 / U1 RNA U1 yes 868 36 57 28.620479 300.565477 164.592978 2.216411303 -0.121212 112 84 17677 YKL006W exon/intron no 498 41 58 30.55193 326.861695 178.7068125 2.252141109 -0.207264 112 85 8314 snoRNA cluster4 intergenic no 638 356 375 28.595971 303.1241 165.8600355 2.219741754 -0.133831 112 86 20670 YIL069C spliced yes 40 17 32 34.433988 288.271401 161.3526945 2.207776222 0.152749 112 87 179 Arg2 ArgACG_ii tRNA yes 273 11 23 59.985752 316.532204 188.258978 2.274755697 0.040253 112 88 6984 snR60 snR60 yes 304 1 20 60.202767 326.27128 193.2370235 2.286090339 -0.035082 112 89 18448 YMR142C 3_exon no 502 461 481 30.874495 335.483598 183.1790465 2.262875794 -0.267259 112 90 10394 RUF7 3_flank no 700 62.897348 297.721428 180.309388 2.256018339 0.212081 112 91 10491 RUF8 RUF8 yes 1151 381 399 31.221833 312.341358 171.7815955 2.234976632 -0.094067 112 92 14710 MT_Thr2 3_flank no 276 226 254 27.324301 333.608858 180.4665795 2.256396787 -0.354587 112 93 15110 MT_COX 2; ORF1 intronic/ORF3exon3 no 2427 2251 2273 29.296426 328.053377 178.6749015 2.252063551 -0.250898 112 94 10821 "rRNA(18S,5.8S,25S)" 18S yes 7956 991 1013 33.178402 300.883512 167.030957 2.222796969 0.031544 112 95 2239 Phe1 PheGAA_i tRNA yes 292 52 67 44.955654 294.644835 169.8002445 2.229938311 0.156837 112 96 12602 MT_15S 15S yes 1848 781 797 54.764247 338.228516 196.4963815 2.293354557 -0.159881 112 97 1804 Leu8 LeuTAG_i intron/tRNA no 301 i8 43 34.927972 295.097602 165.012787 2.217517599 0.100808 112 98 8270 snoRNA cluster4 snR67 yes 638 136 155 29.087856 294.681533 161.8846945 2.20920579 -0.069717 112 99 176 Arg2 ArgACG_ii 5_flank/tRNA no 273 41.167361 280.436016 160.8016885 2.206290605 0.284616 112 100 13590 MT_COX1 3_flank no 13084 13051 13077 29.423019 385.190486 207.3067525 2.316613448 -0.632872 112 101 18258 YML056C exon/intron no 508 41 57 29.634989 302.714814 166.1749015 2.22056543 -0.090897 112 102 18326 YML094W 5_exon no 183 21 38 34.935497 330.657052 182.7962745 2.26196734 -0.190658 112 103 7189 snR64 snR64 yes 301 11 25 7359.405873 2879.237919 5119.321896 3.709212438 1.301262 112 104 15478 YBL091C intron/exon no 188 121 140 32.276753 335.294925 183.785839 2.264312045 -0.247477 113 2 14140 MT_COB intronic no 7308 6286 6314 26.958013 354.103052 190.5305325 2.279964581 -0.478448 113 3 5685 snR34 snR34 yes 750 346 361 37.967196 324.836974 181.402085 2.258642274 -0.133441 113 4 1779 Leu8 LeuTAG_i 5_flank no 301 36.00659 296.140297 166.0734435 2.220300191 0.104685 113 5 6378 snR43 snR43 yes 409 131 145 59.916987 315.644318 187.7806525 2.273650844 0.046946 113 6 3474 Tyr1 TyrGTA_i 5_flank no 289 35.92437 265.582558 150.753464 2.1782673 0.351019 113 7 24 Ala1 AlaAGC tRNA yes 273 16 28 30.44487 309.158721 169.8017955 2.229942278 -0.101525 113 8 6651 snR48 snR48 yes 313 81 102 28.622972 306.554726 167.588849 2.224245118 -0.150388 113 9 21521 copy of SH3382 no 272 36.816049 270.66981 153.7429295 2.186795152 0.336146 113 10 19614 RNA14 1.1 RNA14 1.1 yes 401 181 199 46.820633 306.763585 176.792109 2.247462877 0.052205 113 11 16177 YDR305C intron no 189 101 118 37.577275 258.791222 148.1842485 2.170802042 0.445686 113 12 13605 MT_ATP8/AAP1 MT_AAP1 yes 347 211 233 32.0406 267.614706 149.827653 2.175591976 0.208804 113 13 214 Arg3 ArgCCG 5_flank no 272 31.991867 300.911066 166.4514665 2.221287626 0.000017 113 14 21771 copy of SH13811 no 7308 28.380821 322.651863 175.516342 2.244317559 -0.253486 113 15 18433 YMR142C intron no 502 161 175 52.104224 334.573443 193.3388335 2.286319094 -0.146978 113 16 15069 MT_COX 2; ORF1 ORF1exon1 yes 2427 1636 1657 30.404697 322.563818 176.4842575 2.246705972 -0.181054 113 17 15327 YAL003W intron no 466 341 359 36.13878 312.810077 174.4744285 2.241731784 -0.032534 113 18 11974 "rRNA(18S,5.8S,25S)" 25S yes 7956 6756 6771 15981.93278 22144.78899 19063.36088 4.280199469 -1.150033 113 19 4556 U3b (snR17b) U3b yes 662 336 355 31.291512 305.489097 168.3903045 2.226317082 -0.050898 113 20 11626 "rRNA(18S,5.8S,25S)" 25S yes 7956 5016 5029 66.009197 315.024702 190.5169495 2.279933619 0.086475 113 21 8112 snoRNA cluster 3; 5_flank no 743 71 90 32.013044 291.376383 161.6947135 2.208695821 0.059991 113 22 3060 Ser3 SerCGA 5_flank/tRNA no 301 106.514931 391.453946 248.9844385 2.396172205 -0.155307 113 23 21539 copy of SH4149 no 875 40.241293 324.107021 182.174157 2.260486769 -0.120355 113 24 10610 RUF8 3_flank no 1151 30.591202 272.079165 151.3351835 2.179939908 0.114846 113 25 7633 snR189 3_flank no 389 30.614003 269.337346 149.9756745 2.176020824 0.129491 113 26 19799 Negative Control no 60 NA #VALUE! 58.041723 311.763524 184.9026235 2.266943073 0.067834 113 27 19554 CBP1 2.2 CBP1 2.2 yes 401 181 203 28.674292 305.04371 166.859001 2.222349639 -0.13942 113 28 402 Asn1 AsnGTT 3_flank no 274 32.558268 305.086977 168.8226225 2.227430642 -0.010555 113 29 185 Arg2 ArgACG_ii tRNA yes 273 41 57 46.172661 308.547347 177.360004 2.24885569 0.034177 113 30 18981 YOR096W intron no 501 301 320 28.535216 290.651599 159.5934075 2.203014948 -0.081185 113 31 10357 RUF7 RUF7 yes 700 396 413 84.574589 359.809952 222.1922705 2.346728947 -0.112818 113 32 7559 snR79 3_flank no 284 32.090755 306.74116 169.4159575 2.228954315 -0.032092 113 33 21823 copy of SH16003 no 432 61.774137 307.68124 184.7276885 2.266531996 0.122447 113 34 18832 YNL302C intron no 651 461 477 67.44612 306.304888 186.875504 2.271552377 0.165136 113 35 9970 RUF5-1 RUF5-1 yes 975 656 672 66.552992 353.489552 210.021272 2.322263284 -0.194259 113 36 20543 YGR214W spliced yes 40 9 26 29.174694 261.178795 145.1767445 2.161897053 0.09331 113 37 15879 YDL082W intron no 465 121 138 30.312397 304.717431 167.514914 2.224053479 -0.079437 113 38 13547 MT_COX1 intronic no 13084 12406 12432 30.507071 330.136589 180.32183 2.256048306 -0.23251 113 39 14873 MT_Ala 5_flank no 276 1 25 26.771358 321.798101 174.2847295 2.241259337 -0.315883 113 40 8109 snoRNA cluster 3; 5_flank no 743 56 75 28.807738 328.219874 178.513806 2.251671809 -0.269398 113 41 7278 snR65 3_flank no 300 28.826914 300.156489 164.4917015 2.216143993 -0.108232 113 42 17770 YKL180W intron no 406 61 82 30.75167 317.413785 174.0827275 2.240755683 -0.139572 113 43 16222 YDR381W intron no 866 341 358 32.660312 270.120839 151.3905755 2.18009884 0.220355 113 44 13027 MT_COX1 ai2 no 13084 4606 4622 35.577759 317.780799 176.679279 2.247185618 -0.078013 113 45 7287 snR66 5_flank no 286 30.734378 302.130337 166.4323575 2.221237765 -0.049302 113 46 19657 SIR1 2.2 SIR1 2.2 yes 401 261 275 34.785201 285.498244 160.1417225 2.204504496 0.18084 113 47 19762 Negative Control no 60 NA #VALUE! 33.017458 294.748739 163.8830985 2.214534166 0.071063 113 48 1459 Leu2 LeuCAA_ii intron/tRNA no 314 i28 e2 35.255946 276.468612 155.862279 2.192741022 0.257444 113 49 19687 Negative Control no 60 NA #VALUE! 46.609253 284.519897 165.564575 2.218967419 0.257896 113 50 11586 "rRNA(18S,5.8S,25S)" 25S yes 7956 4816 4829 20850.36879 11158.84708 16004.60793 4.20424504 0.314575 113 51 8654 LSR1 / U2 RNA 5_flank no 1375 31.91761 278.989264 155.453437 2.191600329 0.136859 113 52 15406 YBL059C 5_exon no 185 21 37 34.083151 325.976337 180.029744 2.255344264 -0.155273 113 53 18112 YLR367W intron no 583 461 480 32.118487 286.903721 159.511104 2.202790921 0.091906 113 54 11987 "rRNA(18S,5.8S,25S)" 25S/3_ETS no 7956 6821 6841 63.028624 300.84605 181.937337 2.259921834 0.186427 113 55 11214 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2956 2969 96.612303 340.879227 218.745765 2.339939654 0.090164 113 56 9058 snR14 / U4 RNA 5_flank no 360 32.119662 313.122978 172.62132 2.237094433 -0.080423 113 57 5508 snR32 3_flank no 388 34.099956 309.257425 171.6786905 2.234716392 -0.024952 113 58 4273 telomerase RNA telomerase yes 1501 401 418 29.944444 273.713709 151.8290765 2.18135495 0.073668 113 59 20435 YGL076C spliced yes 40 13 29 64.507537 313.622035 189.064786 2.276610647 0.089545 113 60 14263 MT_VAR1 5_flank/var1 no 1467 151 175 33.784503 350.505345 192.144924 2.283628916 -0.356595 113 61 2552 Pro2 ProTGG_i 5_flank/tRNA no 303 89.188515 341.99919 215.5938525 2.333636373 0.035066 113 62 648 Gln2 GlnTTG_i tRNA yes 272 26 42 39.573786 285.684017 162.6289015 2.211197729 0.229207 113 63 715 Gln3 GlnTTG_ii 3_flank no 272 33.419169 287.221706 160.3204375 2.204988889 0.13132 113 64 18528 YMR225C intron/exon no 247 181 198 31.286161 283.906487 157.596324 2.197546083 0.083825 113 65 6315 snR42 3_flank no 551 33.102609 294.453604 163.7781065 2.214255846 0.075597 113 66 15775 YDL012C exon/intron no 186 41 57 30.921149 300.467324 165.6942365 2.219307402 -0.032813 113 67 14101 MT_COB bi4 no 7308 5701 5727 28.727482 296.403274 162.565378 2.211028058 -0.096845 113 68 20499 YGR001C spliced yes 40 9 26 30.40294 298.00814 164.20554 2.215387805 -0.03533 113 69 2821 Pro7 ProTGG_vi 5_flank no 303 28.213515 299.229542 163.7215285 2.214105791 -0.137532 113 70 5744 snR35 5_flank no 740 43.257037 276.346976 159.8020065 2.203582228 0.330178 113 71 3390 Thr4 ThrTGT_ii tRNA yes 272 36 52 46.862151 298.991781 172.926966 2.237862722 0.12258 113 72 21236 YOR293W spliced yes 40 17 33 39.201383 304.129728 171.6655555 2.234683163 0.053524 113 73 13881 MT_COB intronic no 7308 2401 2422 27.909263 321.742459 174.825861 2.242605676 -0.265785 113 74 2177 Met2 MetCAT_ii tRNA yes 272 16 28 41.433418 302.199037 171.8162275 2.235064179 0.076374 113 75 3514 Tyr1 TyrGTA_i 3_flank no 289 26.327984 318.480106 172.404045 2.236547451 -0.32803 113 76 13892 MT_COB intronic no 7308 2566 2587 28.412593 320.125424 174.2690085 2.24122016 -0.237844 113 77 8829 LSR1 / U2 RNA U2 yes 1375 786 805 31.442184 293.048958 162.245571 2.21017285 0.030664 113 78 20041 YBR189W spliced yes 40 5 21 59.881974 317.41558 188.648777 2.275653994 0.032588 113 79 18328 YML094W intron no 183 61 77 32.507078 293.090792 162.798935 2.211651559 0.065181 113 80 8619 snR19 / U1 RNA U1 yes 868 591 603 80.428182 304.354268 192.391225 2.28418526 0.256782 113 81 12873 MT_COX1 ai1 no 13084 2296 2317 26.676965 298.585138 162.6310515 2.21120347 -0.221674 113 82 5085 snR11 snR11 yes 458 26 40 48.177682 296.544079 172.3608805 2.236438704 0.149071 113 83 18617 YNL069C 3_exon no 549 501 518 34.52545 315.472841 174.9991455 2.243035928 -0.068993 113 84 11380 "rRNA(18S,5.8S,25S)" 25S yes 7956 3786 3802 23147.01089 17009.88945 20078.45017 4.302730187 -0.258404 113 85 8057 snoRNA cluster 2 intergenic no 739 521 538 31.705998 295.444536 163.575267 2.213717638 0.024399 113 86 1763 Leu7 LeuTAA 3_flank no 284 28.840961 326.842896 177.8419285 2.250034159 -0.260454 113 87 18402 YMR125W intron no 422 181 195 171.361944 493.074728 332.218336 2.521423599 -0.251609 113 88 181 Arg2 ArgACG_ii tRNA yes 273 21 33 73.930358 302.256336 188.093347 2.274373435 0.235961 113 89 14840 MT_Asp tRNAAsp yes 275 121 140 29.253966 281.285506 155.269736 2.191086815 0.001085 113 90 11156 "rRNA(18S,5.8S,25S)" 18S yes 7956 2666 2679 35.421587 264.107315 149.764451 2.175408739 0.346557 113 91 6275 snR42 snR42 yes 551 156 180 29.539576 306.775182 168.157379 2.22571593 -0.118796 113 92 20720 YJL136C spliced yes 40 13 33 27.562791 297.493464 162.5281275 2.210928532 -0.16604 113 93 19062 YOR293W 5_exon no 537 1 17 426.098705 502.440016 464.2693605 2.666770023 0.622737 113 94 14874 MT_Ala 5_flank no 276 16 44 29.360151 307.511173 168.435662 2.226434048 -0.12957 113 95 18741 YNL162W intron no 612 141 158 33.17724 336.665013 184.9211265 2.26698653 -0.246162 113 96 17922 YLR078C 5_exon no 189 21 41 31.084883 322.390616 176.7377495 2.247329321 -0.166065 113 97 13178 MT_COX1 exon4 yes 13084 6871 6887 32.059829 310.891037 171.475433 2.234201908 -0.063516 113 98 18649 YNL112W intron no 1102 161 178 33.149119 314.766486 173.9578025 2.240443913 -0.080298 113 99 18938 YOL121C intron no 490 421 440 31.352307 308.129761 169.741034 2.229786843 -0.064718 113 100 9028 snR17a / U3a U3a yes 690 426 444 31.596052 289.712164 160.654108 2.205891835 0.056846 113 101 12405 5S rRNA NTS2 no 1420 981 996 35.927446 279.539609 157.7335275 2.197924016 0.246343 113 102 19575 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 201 217 34.172661 317.603707 175.888184 2.245236665 -0.089882 113 103 16406 YER056C intron no 497 181 198 32.353077 279.617663 155.98537 2.193083867 0.146867 113 104 15030 MT_COX 2; ORF1 ORF1exon1 yes 2427 1051 1077 30.456641 380.409166 205.4329035 2.312670004 -0.594819 114 2 16307 YDR450W intron no 535 421 441 27.89098 300.519436 164.205208 2.215386927 -0.161125 114 3 11809 "rRNA(18S,5.8S,25S)" 25S yes 7956 5931 5949 38.001138 304.014439 171.0077885 2.233015891 0.051744 114 4 18533 YMR230W exon/intron no 510 41 59 32.379073 274.855257 153.617165 2.186439746 0.179334 114 5 4405 telomerase RNA telomerase yes 1501 1061 1076 41.533543 284.997144 163.2653435 2.212894006 0.240346 114 6 9870 RUF5-1 RUF5-1 yes 975 156 172 72.957935 331.883943 202.420939 2.306255435 0.00163 114 7 2538 Pro2 ProTGG_i 5_flank no 303 35.073695 338.633225 186.85346 2.271501144 -0.256896 114 8 10947 "rRNA(18S,5.8S,25S)" 18S yes 7956 1621 1638 186.086841 446.791314 316.4390775 2.50029011 0.018329 114 9 2744 Pro5 ProTGG_iv tRNA/3_flank no 303 30.438175 267.765198 149.1016865 2.173482556 0.128337 114 10 19358 YPL249C 3_exon no 337 301 317 82.397408 376.279061 229.3382345 2.360476465 -0.230839 114 11 11054 "rRNA(18S,5.8S,25S)" 18S yes 7956 2156 2169 10290.94686 8794.802914 9542.874886 3.97967923 -0.151137 114 12 13568 MT_COX1 exon6 yes 13084 12721 12738 37.486448 319.185844 178.336146 2.251239377 -0.085568 114 13 20776 YKL006C-A spliced yes 40 13 32 32.032291 349.165891 190.599091 2.280120825 -0.350805 114 14 12659 MT_15S 15S yes 1848 1636 1662 28.471164 325.093287 176.7822255 2.247438597 -0.264047 114 15 20143 YDL108W spliced yes 40 21 38 414.460266 807.980195 611.2202305 2.78619772 -0.235799 114 16 16182 YDR367W 5_exon no 201 21 38 36.139084 307.765232 171.952158 2.235407631 0.01105 114 17 8704 LSR1 / U2 RNA U2 yes 1375 161 178 32.753364 282.740295 157.7468295 2.197960639 0.13926 114 18 20440 YGL087C spliced yes 40 9 26 34.961964 290.10062 162.531292 2.210936988 0.143417 114 19 16137 YDR092W 5_exon no 368 21 37 39.134835 286.406478 162.7706565 2.211576115 0.221132 114 20 4453 telomerase RNA telomerase/3_flank no 1501 45.310197 349.622656 197.4664265 2.295493267 -0.301072 114 21 7727 snoRNA cluster1 intergenic no 1574 431 450 30.2802 317.35847 173.819335 2.240098084 -0.155385 114 22 7920 snoRNA cluster1 snR72 yes 1574 1396 1415 28.557988 276.48422 152.521104 2.18332994 -0.013402 114 23 6755 snR50 5_flank no 290 28.685392 314.877848 171.78162 2.234976694 -0.197435 114 24 80 Ala2 AlaTGC tRNA yes 273 36 51 336.58589 622.574711 479.5803005 2.680861335 -0.019989 114 25 7185 snR64 5_flank/snR64 no 301 48.380091 343.294059 195.837075 2.291894914 -0.235592 114 26 17489 YJL024C 3_exon no 177 141 157 42.495448 311.34439 176.919919 2.247776732 -0.002396 114 27 109 Arg1 ArgACG_i 5_flank no 273 30.743496 295.006161 162.8748285 2.211853971 -0.005058 114 28 17933 YLR093C intron no 241 61 82 28.782003 311.900842 170.3414225 2.23132027 -0.176434 114 29 5057 snR10 3_flank no 445 28.737754 313.616739 171.1772465 2.233446036 -0.188142 114 30 9645 RUF4 RUF4 yes 988 1 15 30.587453 273.199731 151.893592 2.181539452 0.109183 114 31 6397 snR43 3_flank no 409 30.443477 314.009878 172.2266775 2.236100424 -0.130239 114 32 9158 snR7 U5 RNA U5 yes 415 61 80 28.362958 286.385796 157.374377 2.196934024 -0.070904 114 33 6088 snR37 snR37 yes 586 356 372 34.00028 277.412317 155.7062985 2.192306181 0.213301 114 34 16872 YGL187C intron no 442 301 318 37.774127 295.05949 166.4168085 2.221197189 0.133564 114 35 20779 YKL006W spliced yes 40 1 20 30.130724 325.439996 177.78536 2.249895995 -0.20685 114 36 14111 MT_COB intronic no 7308 5851 5873 28.316154 294.233074 161.274614 2.207566011 -0.109467 114 37 11288 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3326 3343 89.523811 305.501236 197.5125235 2.295594638 0.301212 114 38 16533 YER131W intron no 461 281 297 61.878656 336.931815 199.4052355 2.299736557 -0.106477 114 39 18731 YNL147W intron/exon no 220 161 176 118.24471 334.39384 226.319275 2.354721543 0.26258 114 40 20225 YDR129C spliced yes 40 5 26 28.786773 298.989466 163.8881195 2.214547472 -0.105209 114 41 4159 SRP 3_flank no 875 40.525705 284.070146 162.2979255 2.210312969 0.247206 114 42 21495 copy of SH2288 no 292 34.564611 336.885156 185.7248835 2.268870095 -0.243771 114 43 11672 "rRNA(18S,5.8S,25S)" 25S yes 7956 5246 5264 6697.140932 14088.3309 10392.73592 4.016729892 -1.459959 114 44 5404 snR31 snR31 yes 425 86 98 42.26725 323.906872 183.087061 2.262657653 -0.111665 114 45 10163 RUF6 RUF6 yes 1251 661 675 30.610835 283.602023 157.106429 2.196193957 0.060609 114 46 19502 YPT1 YPT1 yes 402 341 355 66.250073 307.910397 187.080235 2.272027907 0.145531 114 47 4324 telomerase RNA telomerase yes 1501 656 672 32.937224 265.719314 149.328269 2.174142031 0.25942 114 48 14691 MT_21S 3_flank no 4639 4576 4588 124.218443 348.097398 236.1579205 2.373202516 0.208545 114 49 6463 snR45 snR45/3_flank no 372 31.502157 285.01001 158.2560835 2.199360414 0.083867 114 50 87 Ala2 AlaTGC tRNA/3_flank no 273 33.767208 301.407883 167.5875455 2.22424174 0.034525 114 51 9491 RUF2 3_flank no 468 31.934346 346.702478 189.318412 2.277192853 -0.334576 114 52 15928 YDL108W intron no 181 101 120 32.058056 335.126585 183.5923205 2.263854511 -0.249052 114 53 17915 YLR061W intron no 489 361 380 30.082544 310.549686 170.316115 2.231255742 -0.122292 114 54 20140 YDL108W spliced yes 40 9 26 1025.534654 1000.805177 1013.169916 3.005682286 0.499784 114 55 9396 RUF1 3_flank no 750 38.296132 299.689337 168.9927345 2.227868033 0.092486 114 56 2246 Phe1 PheGAA_i 3_flank no 292 34.178952 312.753067 173.4660095 2.239214388 -0.051771 114 57 4134 SRP SRP yes 875 561 573 52.603283 296.522415 174.562849 2.241951821 0.170439 114 58 6288 snR42 snR42 yes 551 221 237 30.012628 302.136784 166.074706 2.220303492 -0.074156 114 59 12854 MT_COX1 ai1 no 13084 2011 2028 36.052905 323.285053 179.668979 2.2544731 -0.124784 114 60 10775 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 761 779 29.876842 274.149164 152.013003 2.181880739 0.06804 114 61 9316 RUF1 RUF1 yes 750 156 175 29.792745 285.759087 157.775916 2.19804071 0.008429 114 62 12271 5S rRNA NTS2 no 1420 311 330 31.710721 326.667395 179.189058 2.253311486 -0.190381 114 63 3943 RNase MRP RNaseMRP yes 540 131 153 29.581318 303.648632 166.614975 2.221714032 -0.098461 114 64 1708 Leu6 LeuGAG 3_flank no 282 31.435549 289.201634 160.3185915 2.204983889 0.054776 114 65 12939 MT_COX1 ai2 no 13084 3286 3301 374.699652 555.407404 465.053528 2.667502943 0.301769 114 66 8877 LSR1 / U2 RNA U2 yes 1375 1026 1038 30.990282 315.720211 173.3552465 2.23893699 -0.121651 114 67 19924 YAL030W spliced yes 40 25 40 44.389165 297.642058 171.0156115 2.233035758 0.127269 114 68 7246 snR65 snR65 yes 300 6 27 30.332063 286.950472 158.6412675 2.200416171 0.030764 114 69 11570 "rRNA(18S,5.8S,25S)" 25S yes 7956 4736 4752 7753.870563 9137.700872 8445.785718 3.926640059 -0.559951 114 70 13545 MT_COX1 intronic no 13084 12376 12400 27.799501 309.878308 168.8389045 2.227472526 -0.207067 114 71 16425 YER074W intron no 566 61 77 39.862616 328.145869 184.0042425 2.264827836 -0.155671 114 72 8480 snoRNA cluster 5 3_flank no 586 566 582 27.605267 281.375128 154.4901975 2.188900928 -0.089472 114 73 3039 Ser2 SerAGA_ii 3_flank no 282 27.713361 305.506001 166.609681 2.221700233 -0.192966 114 74 11367 "rRNA(18S,5.8S,25S)" 25S yes 7956 3721 3736 14136.73256 10825.2738 12481.00318 4.096249494 -0.10964 114 75 1896 Lys1 LysCTT_i 5_flank no 272 33.906088 286.016469 159.9612785 2.204014867 0.154167 114 76 18124 YLR388W intron no 258 121 137 38.043463 291.207688 164.6255755 2.216497306 0.168979 114 77 9168 snR7 U5 RNA U5 yes 415 111 123 49.96602 299.266259 174.6161395 2.242084382 0.133492 114 78 7756 snoRNA cluster1 snR76 yes 1574 576 588 1135.919643 2895.995975 2015.957809 3.304481439 -1.056446 114 79 13951 MT_COB bi3 no 7308 3451 3477 30.589563 306.945417 168.76749 2.227288791 -0.083345 114 80 8563 snR19 / U1 RNA U1 yes 868 311 327 36.427168 313.266837 174.8470025 2.242658191 -0.035886 114 81 10951 "rRNA(18S,5.8S,25S)" 18S yes 7956 1641 1661 5312.959866 13742.52294 9527.741405 3.978989961 -1.700822 114 82 7167 snR64 5_flank no 301 40.382828 289.368835 164.8758315 2.217156999 0.195247 114 83 3718 Val3 ValCAC tRNA/3_flank no 273 31.666224 301.410496 166.53836 2.221514284 -0.01372 114 84 10735 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 561 579 33.73615 286.016545 159.8763475 2.203784218 0.14892 114 85 13313 MT_COX1 ai5a no 13084 8896 8920 30.919638 338.803752 184.861695 2.266846931 -0.290992 114 86 18186 YML024W 5_exon no 498 21 37 35.021673 272.954835 153.988254 2.187487595 0.274033 114 87 16220 YDR381W intron no 866 301 315 63.24752 333.367278 198.307399 2.297338918 -0.071075 114 88 6715 snR49 snR49 yes 365 101 122 31.407614 313.269858 172.338736 2.236382903 -0.093337 114 89 20558 YHL001W spliced yes 40 21 37 35.610538 284.66792 160.139229 2.204497733 0.197747 114 90 817 Glu1 GluCTC 3_flank no 272 33.748259 285.9157 159.8319795 2.203663678 0.149944 114 91 14162 MT_COB intronic no 7308 6616 6640 27.751464 303.964252 165.857858 2.219736052 -0.184094 114 92 21423 Trp1 spliced yes 40 13 29 82.496991 316.899702 199.6983465 2.300374469 0.172244 114 93 14887 MT_Ala 3_flank no 276 211 239 27.586664 326.073226 176.829945 2.247555812 -0.302543 114 94 4715 snR4 snR4 yes 386 111 123 80.625885 315.045971 197.835928 2.296305164 0.175154 114 95 6167 snR39B 3_flank no 296 39.162185 307.461679 173.311932 2.238828464 0.022988 114 96 7511 snR71 3_flank no 290 33.074565 288.947919 161.011242 2.2068562 0.109464 114 97 3147 Ser4 SerGCT 3_flank no 301 31.10153 278.555608 154.828569 2.1898511 0.109227 114 98 11069 "rRNA(18S,5.8S,25S)" 18S yes 7956 2231 2249 56.187135 313.934667 185.060901 2.267314672 0.040232 114 99 21882 copy of SH18402 no 422 111.313307 424.994278 268.1537925 2.428383944 -0.301825 114 100 2319 Phe3 PheGAA_iii 5_flank no 291 33.764438 354.697496 194.230967 2.288318472 -0.389869 114 101 6001 snR37 5_flank no 586 34.085299 335.258991 184.672145 2.266401394 -0.231526 114 102 3543 Tyr2 TyrGTA_ii 5_flank/tRNA no 289 40.601286 319.393985 179.9976355 2.2552668 -0.078906 114 103 19374 YPR043W intron no 503 61 77 34.65473 301.568463 168.1115965 2.225597673 0.043951 114 104 20875 YLR185W spliced yes 40 9 25 92.368399 377.854037 235.111218 2.371273351 -0.171424 115 2 1520 Leu3 LeuCAA_iii tRNA yes 314 38 e21 72.509328 341.144631 206.8269795 2.31560719 -0.06739 115 3 8572 snR19 / U1 RNA U1 yes 868 356 371 40.996283 283.709426 162.3528545 2.210459929 0.251811 115 4 15029 MT_COX 2; ORF1 ORF1exon1 yes 2427 1036 1058 30.713763 321.8063 176.2600315 2.246153843 -0.166555 115 5 15311 YAL003W 5_exon no 466 21 37 32.530807 252.438395 142.484601 2.153767931 0.310137 115 6 20062 YBR255C-A spliced yes 40 21 38 30.669411 236.554206 133.6118085 2.125844842 0.29221 115 7 19809 Negative Control no 60 NA #VALUE! 41.690274 321.481241 181.5857575 2.259081782 -0.093004 115 8 687 Gln3 GlnTTG_ii 5_flank no 272 30.586965 339.177319 184.882142 2.266894964 -0.298194 115 9 19814 Negative Control no 60 NA #VALUE! 35.986928 274.856713 155.4218205 2.191511992 0.288779 115 10 7857 snoRNA cluster1 intergenic no 1574 1081 1098 33.117406 298.014873 165.5661395 2.218971522 0.053929 115 11 11124 "rRNA(18S,5.8S,25S)" 18S yes 7956 2506 2519 114.30972 332.557324 223.433522 2.349148331 0.25208 115 12 2945 Ser1 SerAGA_i 5_flank no 283 30.216482 254.959575 142.5880285 2.154083064 0.182236 115 13 8290 snoRNA cluster4 intergenic no 638 236 255 33.856588 370.80572 202.331154 2.306062759 -0.513714 115 14 20404 YFR031C-A spliced yes 40 9 26 77.845503 417.211461 247.528482 2.393625178 -0.501154 115 15 18270 YML056C intron no 508 281 293 48.899567 340.006621 194.453094 2.288814858 -0.207514 115 16 15062 MT_COX 2; ORF1 ORF1exon1 yes 2427 1531 1548 33.574644 351.692608 192.633626 2.2847321 -0.366613 115 17 7603 snR189 snR189 yes 389 86 103 38.586104 339.353618 188.969861 2.276392544 -0.252428 115 18 18757 YNL162W intron no 612 461 481 29.57761 279.577856 154.577733 2.189146934 0.026289 115 19 5944 snR36 snR36 yes 555 176 192 41.324173 328.527967 184.92607 2.26699814 -0.153735 115 20 7664 snoRNA cluster1 snR78 yes 1574 116 137 28.262428 289.675699 158.9690635 2.201312616 -0.091631 115 21 14356 MT_ORF9; ORF10 ORF9 yes 578 106 118 28.491523 288.570628 158.5310755 2.200114406 -0.073997 115 22 9388 RUF1 RUF1 yes 750 516 537 36.458009 296.477976 166.4679925 2.221330742 0.107027 115 23 15299 MT_9S 3_flank no 701 661 682 28.78438 290.19764 159.49101 2.202736208 -0.065595 115 24 13044 MT_COX1 ai2 no 13084 4861 4882 28.857023 322.820119 175.838571 2.245114146 -0.237071 115 25 12862 MT_COX1 ai1 no 13084 2131 2152 28.903504 285.843595 157.3735495 2.19693174 -0.039047 115 26 7395 snR68 3_flank no 336 58.572867 331.291339 194.932103 2.289883368 -0.083485 115 27 19558 CBP1 2.2 CBP1 2.2 yes 401 261 280 30.930141 284.916224 157.9231825 2.198445887 0.065337 115 28 1251 Ile2 IleTAT_i 5_flank no 333 30.930592 290.252151 160.5913715 2.205722207 0.03119 115 29 6759 snR50 5_flank no 290 40.722067 322.074927 181.398497 2.258633684 -0.101411 115 30 21093 YNL012W spliced yes 40 21 36 40.584394 281.627814 161.106104 2.207111995 0.271465 115 31 3217 Thr1 ThrAGT 5_flank no 273 30.631594 292.097858 161.364726 2.207808605 0.009376 115 32 16508 YER117W intron no 571 341 358 28.5387 328.804066 178.671383 2.252054999 -0.28247 115 33 12337 5S rRNA NTS2 no 1420 641 659 50.703628 318.010313 184.3569705 2.265659563 -0.023276 115 34 18383 YMR116C intron no 373 161 178 28.366232 286.695562 157.530897 2.197365746 -0.072164 115 35 15524 YBR048W intron no 611 441 457 41.910831 294.620262 168.2655465 2.2259952 0.148386 115 36 15521 YBR048W intron no 611 381 397 34.276088 289.689489 161.9827885 2.209468871 0.138718 115 37 10841 "rRNA(18S,5.8S,25S)" 18S yes 7956 1091 1114 32.4829 290.47757 161.480235 2.208119373 0.080894 115 38 14166 MT_COB intronic no 7308 6676 6688 54.218603 300.093516 177.1560595 2.248356012 0.146373 115 39 9863 RUF5-1 RUF5-1 yes 975 121 142 28.809816 340.13972 184.474768 2.265936973 -0.335002 115 40 19842 Negative Control no 60 NA #VALUE! 34.711153 294.696228 164.7036905 2.21670333 0.101594 115 41 21903 copy of SH19203 no 601 30.739253 296.321737 163.530495 2.213598751 -0.013394 115 42 11547 "rRNA(18S,5.8S,25S)" 25S yes 7956 4621 4638 2295.775038 2855.938105 2575.856572 3.410921677 -0.124735 115 43 11863 "rRNA(18S,5.8S,25S)" 25S yes 7956 6201 6216 105.313986 271.693224 188.503605 2.27531966 0.66401 115 44 19228 YPL090C intron no 494 121 138 46.120363 300.670876 173.3956195 2.239038122 0.104946 115 45 3401 Thr4 ThrTGT_ii 3_flank no 272 30.566523 297.330767 163.948645 2.214707832 -0.025537 115 46 12848 MT_COX1 ai1 no 13084 1921 1938 34.627402 343.823454 189.225428 2.276979496 -0.300566 115 47 17436 YIL133C intron no 390 201 218 31.927964 345.005077 188.4665205 2.275234213 -0.322529 115 48 17444 YIL133C 3_exon no 390 361 376 33.210788 270.428032 151.81941 2.181327299 0.235716 115 49 17908 YLR061W intron no 489 221 240 31.50834 326.941042 179.224691 2.25339784 -0.195101 115 50 19665 SIR1 2.4 SIR1 2.4 yes 401 21 40 29.738892 284.731159 157.2350255 2.196549295 0.010417 115 51 1019 Gly2 GlyCCC_ii 3_flank no 272 33.979319 275.609644 154.7944815 2.189755474 0.224661 115 52 14568 MT_21S 21S_rRNA3 yes 4639 2731 2748 42.287172 329.424368 185.85577 2.269176049 -0.157929 115 53 3587 Val1 ValAAC_i 5_flank no 274 32.120233 254.758208 143.4392205 2.156667916 0.278221 115 54 11430 "rRNA(18S,5.8S,25S)" 25S yes 7956 4036 4051 6242.971192 11103.06759 8673.019389 3.938170317 -1.148778 115 55 8615 snR19 / U1 RNA U1 yes 868 571 587 36.239502 296.16428 166.201891 2.220635961 0.107154 115 56 4491 U3b (snR17b) U3b yes 662 11 30 30.100048 296.404479 163.2522635 2.212859212 -0.035851 115 57 16085 YDR025W intron no 439 241 257 36.222883 270.289625 153.256254 2.185418206 0.327314 115 58 7019 snR60 3_flank no 304 38.245018 315.88842 177.066719 2.24813694 -0.054724 115 59 14458 MT_21S 21S_rRNA3 yes 4639 1081 1098 34.11525 303.168157 168.6417035 2.22696498 0.02438 115 60 19321 YPL198W 3_exon no 509 481 500 29.987676 321.778955 175.8833155 2.245224644 -0.19099 115 61 3369 Thr4 ThrTGT_ii 5_flank no 272 40.090043 299.14746 169.6187515 2.229473862 0.101722 115 62 9697 RUF4 RUF4 yes 988 261 278 29.830874 294.895839 162.3633565 2.210488021 -0.035836 115 63 723 Gln3 GlnTTG_ii 3_flank no 272 31.729566 314.076719 172.9031425 2.237802887 -0.092998 115 64 9197 snR7 U5 RNA 3_flank no 415 29.559128 308.617571 169.0883495 2.228113685 -0.12913 115 65 7419 snR69 5_flank/snR69 no 301 37.336091 302.295835 169.815963 2.229978512 0.065972 115 66 3269 Thr2 ThrCGT 5_flank no 272 31.063065 330.176482 180.6197735 2.256765293 -0.225331 115 67 13836 MT_COB bi2 no 7308 1726 1747 26.806062 315.793071 171.2995665 2.233756264 -0.288786 115 68 14464 MT_21S 21S_rRNA3 yes 4639 1171 1195 28.374644 314.719825 171.5472345 2.234383721 -0.207885 115 69 20067 YBR230C spliced yes 40 17 33 66.318731 281.926427 174.122579 2.240855091 0.368819 115 70 16257 YDR424C 5_exon no 196 1 21 35.197382 314.882824 175.040103 2.24313756 -0.056386 115 71 10574 RUF8 RUF8 yes 1151 796 810 57.533584 301.336226 179.434905 2.253906929 0.153286 115 72 3424 Trp1 TrpCCA 5_flank no 306 72.608505 322.619522 197.6140135 2.295817739 0.067608 115 73 21774 copy of SH14038 no 7308 27.592721 316.9251 172.2589105 2.236181696 -0.249921 115 74 15405 YBL059C 5_exon no 185 1 18 35.424316 314.547875 174.9860955 2.243003541 -0.051094 115 75 4863 snR8 snR8 yes 390 96 111 33.892766 280.917157 157.4049615 2.197018417 0.186878 115 76 17133 YHR010W intron no 661 381 398 32.289192 314.989795 173.6394935 2.23964851 -0.092933 115 77 3743 Val4 ValTAC 5_flank no 274 28.618452 305.452557 167.0355045 2.222808793 -0.143921 115 78 4070 SRP SRP yes 875 241 257 48.282373 326.779918 187.5311455 2.273073406 -0.107104 115 79 1273 Ile2 IleTAT_i intron yes 333 i24 i38 62.094966 309.891246 185.993106 2.269496847 0.1062 115 80 1775 Leu8 LeuTAG_i 5_flank no 301 28.686301 301.953175 165.319738 2.218324708 -0.123776 115 81 18418 YMR133W intron no 225 81 96 45.27959 290.989917 168.1347535 2.225657492 0.192097 115 82 17293 YHR141C intron no 541 381 400 34.548624 314.329986 174.439305 2.241644348 -0.059746 115 83 5586 snR33 3_flank no 383 31.713916 285.009707 158.3618115 2.199650461 0.090864 115 84 13867 MT_COB intronic no 7308 2191 2212 30.88361 320.214321 175.5489655 2.244398275 -0.152016 115 85 19604 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 381 396 54.939033 308.122132 181.5305825 2.258949801 0.081945 115 86 16394 YER044C intron/exon no 188 121 140 31.280737 291.568471 161.424604 2.20796973 0.034613 115 87 315 Arg5 ArgTCT 5_flank no 272 29.490572 301.503365 165.4969685 2.218790043 -0.088615 115 88 15358 YBL026W intron no 228 141 157 31.692082 279.301838 155.49696 2.191721903 0.127392 115 89 5111 snR11 snR11 yes 458 156 178 27.802041 300.20955 164.0057955 2.214859195 -0.164714 115 90 13747 MT_COB exon1 yes 7308 391 410 27.878116 298.741775 163.3099455 2.213012634 -0.153941 115 91 3750 Val4 ValTAC 5_flank no 274 29.893792 330.843228 180.36851 2.256160718 -0.246203 115 92 5580 snR33 3_flank no 383 33.824135 284.923082 159.3736085 2.202416406 0.158692 115 93 19577 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 241 259 31.592458 287.440698 159.516578 2.202805824 0.07122 115 94 5927 snR36 snR36 yes 555 91 108 41.345569 312.7777 177.0616345 2.248124469 -0.018901 115 95 14296 MT_VAR1 VAR1 yes 1467 646 674 31.154724 350.44098 190.797852 2.280573481 -0.371315 115 96 5741 snR34 3_flank no 750 33.033093 292.040128 162.5366105 2.210951199 0.088555 115 97 19096 YOR312C intron no 507 141 158 33.073962 303.569376 168.321669 2.226140029 0.008276 115 98 11886 "rRNA(18S,5.8S,25S)" 25S yes 7956 6316 6331 45.230203 260.036855 152.633529 2.183649946 0.504225 115 99 18054 YLR333C intron no 523 361 381 35.553056 323.933353 179.7432045 2.25465248 -0.131656 115 100 15876 YDL082W intron no 465 61 83 31.855668 334.91635 183.386009 2.263366199 -0.250123 115 101 21136 YNL147W spliced yes 40 17 34 32.176173 340.448616 186.3123945 2.270241747 -0.286467 115 102 6398 snR43 3_flank no 409 32.464155 270.941778 151.7029665 2.180994073 0.208478 115 103 9449 RUF2 RUF2 yes 468 86 102 32.702992 269.644445 151.1737185 2.179476296 0.224969 115 104 17936 YLR093C intron no 241 121 140 32.889579 335.55106 184.2203195 2.265337531 -0.241577 116 2 15898 YDL083C exon/intron no 532 41 58 27.307489 316.127971 171.71773 2.234815139 -0.261401 116 3 7009 snR60 3_flank no 304 29.16309 317.910705 173.5368975 2.239391829 -0.197838 116 4 21347 YPR132W spliced yes 40 5 21 53.522939 301.97478 177.7488595 2.249806823 0.126597 116 5 10432 RUF8 RUF8 yes 1151 86 101 69.440509 289.853455 179.646982 2.254419926 0.315123 116 6 3549 Tyr2 TyrGTA_ii tRNA yes 289 16 30 412.384314 581.968049 497.1761815 2.696510314 0.327773 116 7 20860 YLR078C spliced yes 40 17 34 29.028843 324.439123 176.733983 2.247320065 -0.240082 116 8 12495 MT_tRNA Pro 5_flank/tRNA no 272 76 102 30.772448 304.470703 167.6215755 2.224329918 -0.062216 116 9 6040 snR37 snR37 yes 586 116 133 32.460673 273.493639 152.977156 2.184626583 0.191106 116 10 4971 snR9 3_flank no 387 41.43555 297.902647 169.6690985 2.229602752 0.116387 116 11 10773 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 751 770 28.497173 284.770518 156.6338455 2.19488561 -0.056037 116 12 18441 YMR142C intron no 502 321 337 30.231374 298.410729 164.3210515 2.215693205 -0.043725 116 13 17576 YJL191W exon/intron no 508 41 55 41.153609 310.768943 175.961276 2.245417103 -0.001891 116 14 9212 snR6 / U6 RNA 5_flank no 312 34.943705 317.247226 176.0954655 2.245748173 -0.077868 116 15 4979 snR10 5_flank no 445 30.628324 282.374949 156.5016365 2.194518883 0.067271 116 16 20153 YDL125C spliced yes 40 9 29 27.239672 267.520261 147.3799665 2.168438453 -0.05491 116 17 8302 snoRNA cluster4 intergenic no 638 296 312 36.907913 287.396146 162.1520295 2.209922389 0.188992 116 18 16887 YGL189C intron no 269 161 182 31.625488 300.470437 166.0479625 2.220233551 -0.009313 116 19 9152 snR7 U5 RNA U5 yes 415 31 47 45.357838 305.297346 175.327592 2.243850268 0.060687 116 20 5556 snR33 snR33 yes 383 66 83 30.285761 309.353073 169.819417 2.229987346 -0.108153 116 21 5989 snR36 3_flank no 555 28.559761 294.607246 161.5835035 2.20839702 -0.097849 116 22 7095 snR63 5_flank no 455 44.356901 351.455846 197.9063735 2.296459781 -0.3201 116 23 258 Arg3 ArgCCG 3_flank no 272 40.614397 289.418259 165.016328 2.217526919 0.195292 116 24 19698 Negative Control no 60 NA #VALUE! 35.831226 306.575759 171.2034925 2.23351262 0.017077 116 25 14559 MT_21S 21S_rRNA3 yes 4639 2596 2614 32.984877 282.491957 157.738417 2.197937478 0.148233 116 26 18572 YNL012W 3_exon no 184 141 157 37.044883 303.036298 170.0405905 2.230552604 0.058421 116 27 21681 copy of SH10031 no 1251 34.149777 310.797381 172.473579 2.236722576 -0.036623 116 28 1479 Leu2 LeuCAA_ii 3_flank no 314 39.152781 310.44461 174.7986955 2.242538187 -0.004011 116 29 7630 snR189 3_flank no 389 31.169166 290.686559 160.9278625 2.206631243 0.03646 116 30 9879 RUF5-1 RUF5-1 yes 975 201 213 54.888171 310.299078 182.5936245 2.261485609 0.063445 116 31 9236 snR6 / U6 RNA U6 yes 312 51 67 58.596889 316.914387 187.755638 2.273592987 0.028841 116 32 15164 MT_Val tRNA yes 276 136 153 36.635249 315.746238 176.1907435 2.245983088 -0.057393 116 33 19089 YOR312C 5_exon no 507 1 18 69.886399 314.839275 192.362837 2.284121173 0.111791 116 34 7114 snR63 snR63 yes 455 76 95 28.621706 279.660822 154.141264 2.187918916 -0.025151 116 35 13854 MT_COB bi2 no 7308 1996 2018 26.686786 305.614664 166.150725 2.220502241 -0.252088 116 36 21503 copy of SH2553 no 303 228.468675 512.166164 370.3174195 2.568574141 -0.062197 116 37 4360 telomerase RNA telomerase yes 1501 836 848 38.590979 295.005672 166.7983255 2.222191686 0.137198 116 38 11611 "rRNA(18S,5.8S,25S)" 25S yes 7956 4941 4956 46.623092 266.547105 156.5850985 2.19475043 0.437904 116 39 14900 MT_Ile tRNA yes 276 151 167 40.784791 298.793824 169.7893075 2.229910337 0.106596 116 40 644 Gln2 GlnTTG_i tRNA yes 272 6 23 37.819164 293.470754 165.644959 2.219178224 0.1474 116 41 9835 RUF5-1 5_flank no 975 29.868183 280.353242 155.1107125 2.190641793 0.037791 116 42 17589 YJL191W intron no 508 301 316 94.376679 350.998057 222.687368 2.347695582 0.009235 116 43 900 Glu3 GluTTC_ii tRNA yes 272 11 27 1571.18748 1728.997507 1650.092494 3.217508289 0.180733 116 44 10637 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 71 87 52.11055 345.786479 198.9485145 2.298740701 -0.232276 116 45 16912 YGL251C 5_exon no 252 1 17 34.523603 298.307229 166.415416 2.221193555 0.069252 116 46 6707 snR49 snR49 yes 365 61 78 33.697871 284.217284 158.9575775 2.201281236 0.159353 116 47 4547 U3b (snR17b) U3b yes 662 291 307 34.92934 306.000356 170.464848 2.231634836 0.011164 116 48 5021 snR10 snR10 yes 445 136 152 32.248072 266.705988 149.47703 2.17457446 0.223362 116 49 1167 His1 HisGTG tRNA yes 272 56 71 4230.936369 3270.891578 3750.913974 3.574137104 0.411998 116 50 5139 snR11 3_flank no 458 39.874493 319.059025 179.466759 2.25398402 -0.078601 116 51 2196 Met2 MetCAT_ii 3_flank no 272 29.91269 298.711443 164.3120665 2.215669458 -0.056646 116 52 10342 RUF7 RUF7 yes 700 321 340 32.047966 350.378156 191.213061 2.281517554 -0.360399 116 53 307 Arg4 ArgCCT 3_flank no 272 32.097016 327.793225 179.9451205 2.255140075 -0.19387 116 54 9042 snR17a / U3a 3_flank no 690 32.115893 263.493369 147.804631 2.169688042 0.233118 116 55 18437 YMR142C intron no 502 241 258 34.169694 282.942602 158.556148 2.200183086 0.182148 116 56 301 Arg4 ArgCCT 3_flank no 272 32.135585 346.836153 189.485869 2.277576828 -0.332927 116 57 14035 MT_COB bi4 no 7308 4711 4733 30.102042 317.710241 173.9061415 2.240314919 -0.163586 116 58 16945 YGR027C intron no 412 261 278 34.191396 306.883476 170.537436 2.231819729 -0.004799 116 59 5901 snR36 5_flank no 555 30.090471 298.719784 164.4051275 2.215915358 -0.05051 116 60 12398 5S rRNA NTS2 no 1420 946 963 34.138375 292.646676 163.3925255 2.213232186 0.111952 116 61 12161 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7691 7709 44.29004 321.444067 182.8670535 2.262135467 -0.084071 116 62 13339 MT_COX1 ai5a no 13084 9286 9308 27.886083 296.49826 162.1921715 2.210029888 -0.143459 116 63 17148 YHR012W 5_exon no 219 21 37 37.892416 313.002263 175.4473395 2.244146787 -0.029924 116 64 20767 YKL002W spliced yes 40 1 17 37.687345 325.386701 181.537023 2.258965209 -0.138841 116 65 16404 YER056C intron no 497 141 153 63.589644 293.506006 178.547825 2.251754564 0.252045 116 66 17321 YIL004C exon/intron no 231 41 57 39.041458 320.194973 179.6182155 2.254350377 -0.090677 116 67 10583 RUF8 RUF8 yes 1151 841 860 28.778085 273.33527 151.0566775 2.179139928 0.01378 116 68 4486 U3b (snR17b) 5_flank/U3b no 662 28.370496 309.020274 168.695385 2.227103202 -0.174388 116 69 10647 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 121 138 240.528582 532.975659 386.7521205 2.587432704 -0.089146 116 70 4389 telomerase RNA telomerase yes 1501 981 1000 27.617007 287.121561 157.369284 2.196919969 -0.115732 116 71 5249 snR30 snR30 yes 801 96 111 46.120846 288.02263 167.071738 2.22290299 0.222833 116 72 1179 His1 HisGTG 3_flank no 272 49.849228 307.272393 178.5608105 2.251786149 0.063224 116 73 6031 snR37 snR37 yes 586 71 88 27.569244 283.030879 155.3000615 2.191171628 -0.099314 116 74 14664 MT_21S 21S_rRNA4 yes 4639 4171 4188 35.445343 308.714876 172.0801095 2.235730674 -0.00459 116 75 926 Glu3 GluTTC_ii 3_flank no 272 35.885315 314.461751 175.173533 2.243468489 -0.047891 116 76 13777 MT_COB intronic no 7308 841 860 30.458423 321.72674 176.0925815 2.24574106 -0.174426 116 77 5916 snR36 snR36 yes 555 36 55 28.731321 292.760473 160.745897 2.206139896 -0.08017 116 78 8084 snoRNA cluster 2 3_flank no 739 656 677 28.817535 301.102541 164.960038 2.217378748 -0.112928 116 79 673 Gln2 GlnTTG_i 3_flank no 272 30.759221 311.424972 171.0920965 2.233229948 -0.104245 116 80 6379 snR43 snR43 yes 409 136 152 44.41066 309.259151 176.8349055 2.247567995 0.022315 116 81 15068 MT_COX 2; ORF1 ORF1exon1 yes 2427 1621 1643 28.69367 308.394406 168.544038 2.226713395 -0.158828 116 82 4977 snR10 5_flank no 445 28.702854 293.855074 161.278964 2.207577725 -0.08668 116 83 21267 YPL081W spliced yes 40 13 25 66.248703 324.686194 195.4674485 2.291074444 0.013432 116 84 1742 Leu7 LeuTAA tRNA yes 284 6 19 30038.08912 12247.75934 21142.92423 4.325165053 0.606279 116 85 1202 Ile1 IleAAT 5_flank no 274 35.133594 290.011664 162.572629 2.211047429 0.146203 116 86 4766 snR5 snR5 yes 404 1 20 29.42351 297.682836 163.553173 2.213658974 -0.067513 116 87 8941 snR17a / U3a 5_flank/U3a no 690 29.656737 281.608375 155.632556 2.19210045 0.020803 116 88 21195 YOL121C spliced yes 40 5 20 44.083055 282.704403 163.393729 2.213235384 0.268355 116 89 19176 YPL079W intron no 521 201 218 29.96719 297.942419 163.9548045 2.214724148 -0.049999 116 90 466 Asp1 AspGTC_i 3_flank no 271 102.27648 321.696236 211.986358 2.326307914 0.256723 116 91 13233 MT_COX1 ai4 no 13084 7696 7717 27.888473 316.199406 172.0439395 2.235639379 -0.234567 116 92 6918 snR58 5_flank no 296 35.807718 290.275251 163.0414845 2.212298121 0.151827 116 93 9309 RUF1 RUF1 yes 750 121 137 33.520155 276.420516 154.9703355 2.190248573 0.205045 116 94 17553 YJL189W intron no 486 61 80 29.27716 320.226936 174.752048 2.242422274 -0.207127 116 95 79 Ala2 AlaTGC tRNA yes 273 31 45 31.077722 285.401581 158.2396515 2.199315318 0.067174 116 96 20344 YER093C-A spliced yes 40 17 31 75.754717 316.11815 195.9364335 2.292115199 0.136683 116 97 1545 Leu3 LeuCAA_iii 3_flank no 314 42.984055 274.776754 158.8804045 2.201070337 0.345521 116 98 15497 YBL092W intron no 433 321 336 41.277498 268.732416 155.004957 2.190345587 0.40126 116 99 12566 MT_15S 15S yes 1848 241 262 32.607611 364.991863 198.799737 2.298415806 -0.472991 116 100 6244 snR42 snR42 yes 551 1 20 31.939458 320.236823 176.0881405 2.245730107 -0.13827 116 101 18317 YML085C exon/intron no 216 41 59 30.207674 305.637037 167.9223555 2.225108518 -0.088599 116 102 6338 snR43 5_flank no 409 32.540771 312.536537 172.538654 2.236886406 -0.070397 116 103 3221 Thr1 ThrAGT 5_flank no 273 32.759743 327.434864 180.0973035 2.25550721 -0.182704 116 104 18413 YMR125W 3_exon no 422 401 416 37.173774 282.542714 159.858244 2.203735038 0.234055 117 2 14538 MT_21S 21S_rRNA3 yes 4639 2281 2303 27.607897 327.618971 177.613434 2.249475811 -0.310447 117 3 15261 MT_9S 5_flank/9S no 701 91 115 29.505533 340.7064 185.1059665 2.267420418 -0.324215 117 4 3301 Thr2 ThrCGT 3_flank no 272 27.612657 285.077289 156.344973 2.194083922 -0.106462 117 5 16889 YGL189C intron/exon no 269 201 222 29.473455 288.087626 158.7805405 2.200797276 -0.01912 117 6 10759 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 681 694 77.506946 282.234403 179.8706745 2.254960363 0.424792 117 7 16314 YDR471W exon/intron no 484 41 57 31.199814 312.649476 171.924645 2.235338136 -0.096619 117 8 19258 YPL143W exon/intron no 625 41 58 32.905234 304.515497 168.7103655 2.227141766 -0.001532 117 9 6299 snR42 snR42 yes 551 276 288 51.258511 332.937891 192.098201 2.283523298 -0.139148 117 10 3557 Tyr2 TyrGTA_ii tRNA yes 289 40 52 45.346043 270.810184 158.0781135 2.198871744 0.391034 117 11 7369 snR68 snR68 yes 336 66 90 32.256633 264.567504 148.4120685 2.171469218 0.234495 117 12 4407 telomerase RNA telomerase yes 1501 1071 1083 63.251729 313.525769 188.388749 2.275054962 0.083305 117 13 13716 MT_Glu (and 5_flank processing site for COB) 3_flank no 368 271 299 30.341046 349.013922 189.677484 2.27801578 -0.372189 117 14 9104 snR14 / U4 RNA U4 yes 360 136 153 46.056453 311.565744 178.8110985 2.252394471 0.00716 117 15 20561 YHR001W-A spliced yes 40 9 26 39.96008 289.520401 164.7402405 2.216799696 0.192823 117 16 14687 MT_21S 21S_rRNA4 yes 4639 4516 4538 45.98858 318.444793 182.2166865 2.260588145 -0.050852 117 17 17605 YJL205C intron no 243 121 137 31.406261 294.96893 163.1875955 2.212687143 0.017447 117 18 11283 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3301 3316 35.529815 281.139298 158.3345565 2.19957571 0.227633 117 19 13208 MT_COX1 ai4 no 13084 7321 7342 28.180488 304.195004 166.187746 2.220598998 -0.161268 117 20 15171 MT_Val 3_flank no 276 241 265 28.381597 316.95778 172.6696885 2.237216106 -0.220675 117 21 164 Arg2 ArgACG_ii 5_flank no 273 30.485663 290.537256 160.5114595 2.205506044 0.014252 117 22 1021 Gly2 GlyCCC_ii 3_flank no 272 28.698202 288.841598 158.7699 2.200768171 -0.064017 117 23 16456 YER074W intron no 202 121 140 28.845317 296.275034 162.5601755 2.211014159 -0.089908 117 24 18396 YMR125W intron no 422 61 78 30.968562 305.09167 168.030116 2.225387127 -0.059334 117 25 7517 snR79 5_flank no 284 94.610871 368.907832 231.7593515 2.365037267 -0.10227 117 26 4281 telomerase RNA telomerase yes 1501 441 459 31.316364 301.049137 166.1827505 2.220585943 -0.023113 117 27 4593 U3b (snR17b) 3_flank no 662 55.58249 328.389289 191.9858895 2.28326931 -0.079506 117 28 5329 snR30 snR30 yes 801 496 512 33.544362 290.526289 162.0353255 2.209609706 0.114162 117 29 4255 telomerase RNA telomerase yes 1501 311 332 29.532743 315.035327 172.284035 2.236245035 -0.167957 117 30 6171 snR40 5_flank no 297 29.452956 307.377115 168.4150355 2.226380861 -0.125472 117 31 7307 snR66 snR66 yes 286 26 40 31.306495 274.025401 152.665948 2.183742179 0.141267 117 32 15885 YDL082W intron no 465 241 257 35.106207 323.733639 179.419923 2.253870666 -0.131088 117 33 18236 YML026C intron no 501 321 333 56.769647 286.275547 171.522597 2.234321344 0.282044 117 34 21588 copy of SH6045 no 586 38.793484 328.380177 183.5868305 2.263841524 -0.161501 117 35 4688 snR4 5_flank no 386 28.931141 290.329948 159.6305445 2.203115995 -0.0583 117 36 11924 "rRNA(18S,5.8S,25S)" 25S yes 7956 6506 6522 34.876437 283.669579 159.273008 2.202142182 0.197805 117 37 12105 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7411 7426 79.662907 329.036108 204.3495075 2.310373595 0.065081 117 38 1780 Leu8 LeuTAG_i 5_flank no 301 39.028759 278.248894 158.6388265 2.200409489 0.292063 117 39 8883 LSR1 / U2 RNA U2 yes 1375 1056 1070 45.06607 326.065404 185.565737 2.268497791 -0.118257 117 40 812 Glu1 GluCTC 3_flank no 272 29.152204 312.363597 170.7579005 2.232380806 -0.165819 117 41 10182 RUF6 RUF6 yes 1251 756 770 33.033499 294.094642 163.5640705 2.21368791 0.075661 117 42 3689 Val3 ValCAC 5_flank no 273 52.715112 288.155128 170.43512 2.231559091 0.246522 117 43 12811 MT_COX1 ai1 no 13084 1366 1385 54.506639 306.43575 180.4711945 2.256407893 0.093807 117 44 7723 snoRNA cluster1 snR77/intergenic no 1574 411 427 55.384163 250.768814 153.0764885 2.184908491 0.628822 117 45 13224 MT_COX1 ai4 no 13084 7561 7580 28.821005 332.614149 180.717577 2.257000395 -0.293403 117 46 1238 Ile1 IleAAT 3_flank no 274 679.338028 631.497366 655.417697 2.816518164 0.766618 117 47 3064 Ser3 SerCGA tRNA yes 301 16 30 327.136978 569.417266 448.277122 2.651546575 0.107006 117 48 4631 snR3 snR3 yes 395 71 88 31.322845 300.371867 165.847356 2.219708552 -0.01875 117 49 5786 snR35 snR35 yes 740 116 135 31.568962 322.772767 177.1708645 2.248392304 -0.162595 117 50 18417 YMR133W intron no 225 61 78 31.77887 288.796907 160.2878885 2.204900708 0.068697 117 51 7607 snR189 snR189 yes 389 106 124 33.959697 283.991785 158.975741 2.201330858 0.168896 117 52 4010 SRP 5_flank no 875 32.011006 274.549438 153.280222 2.185486121 0.169446 117 53 21263 YPL079W spliced yes 40 21 37 38.174016 337.033792 187.603904 2.273241872 -0.235142 117 54 550 Cys1 CysGCA tRNA yes 272 51 67 66.983389 307.591885 187.287637 2.27250911 0.152077 117 55 16378 YER007C 5_exon no 203 1 18 40.258389 306.148412 173.2034005 2.238556414 0.037468 117 56 14243 MT_Ser tRNA yes 290 121 139 30.063479 324.432256 177.2478675 2.248581019 -0.203473 117 57 323 Arg5 ArgTCT 5_flank no 272 29.067592 280.568093 154.8178425 2.189821011 -0.005445 117 58 7917 snoRNA cluster1 snR72 yes 1574 1381 1398 32.14812 283.506961 157.8275405 2.198182789 0.114798 117 59 17320 YIL004C 5_exon no 231 21 37 77.48442 306.42488 191.95465 2.283198637 0.222375 117 60 11107 "rRNA(18S,5.8S,25S)" 18S yes 7956 2421 2434 8261.138743 9034.61782 8647.878282 3.936909568 -0.463805 117 61 6981 snR60 5_flank/snR60 no 304 32.065599 269.461748 150.7636735 2.178296711 0.200857 117 62 1262 Ile2 IleTAT_i tRNA yes 333 6 22 48.298224 311.068675 179.6834495 2.254508076 0.023047 117 63 13387 MT_COX1 exon5b yes 13084 10006 10023 35.896509 303.538503 169.717506 2.229726641 0.042437 117 64 4045 SRP SRP yes 875 116 134 29.65353 281.287117 155.4703235 2.191647502 0.022155 117 65 11647 "rRNA(18S,5.8S,25S)" 25S yes 7956 5121 5141 37.436891 289.403574 163.4202325 2.213305824 0.177682 117 66 20837 YKR095W-A spliced yes 40 21 38 33.106982 322.29286 177.699921 2.249687235 -0.139221 117 67 6076 snR37 snR37 yes 586 296 312 130.040226 380.421426 255.230826 2.406933126 0.050719 117 68 16301 YDR450W intron no 535 301 313 121.603449 364.815121 243.209285 2.385980151 0.091492 117 69 14097 MT_COB bi4 no 7308 5641 5665 27.984954 295.282558 161.633756 2.208532065 -0.132489 117 70 2608 Pro3 ProTGG_ii 5_flank/tRNA no 303 35.180121 294.13257 164.6563455 2.216578472 0.111882 117 71 10597 RUF8 RUF8 yes 1151 911 923 85.53777 317.88166 201.709715 2.304726816 0.183444 117 72 17191 YHR021C intron no 650 401 415 36.818147 312.180327 174.499237 2.241793532 -0.025203 117 73 15942 YDL125C 5_exon no 211 21 37 71.240265 322.424597 196.832431 2.294096656 0.061123 117 74 9175 snR7 U5 RNA U5 yes 415 146 160 64.337716 301.706097 183.0219065 2.262503075 0.186546 117 75 16609 YFL034C intron no 214 121 140 28.338286 294.186324 161.262305 2.207532863 -0.108042 117 76 12235 5S rRNA NTS2 no 1420 131 145 30.603054 290.343656 160.473355 2.205402932 0.019493 117 77 9426 RUF2 5_flank no 468 26.906123 299.856266 163.3811945 2.213202067 -0.21404 117 78 21208 YOR096W spliced yes 40 5 21 44.698011 322.150889 183.42445 2.263457226 -0.088388 117 79 20150 YDL115C spliced yes 40 21 37 106.292173 380.64028 243.4662265 2.386438725 -0.095296 117 80 10598 RUF8 RUF8 yes 1151 916 932 30.743355 290.177135 160.460245 2.205367451 0.025325 117 81 5801 snR35 snR35 yes 740 191 213 34.561417 336.251267 185.406342 2.268124586 -0.238517 117 82 7497 snR71 3_flank no 290 28.694711 277.280785 152.987748 2.184656652 -0.009812 117 83 2381 Phe4 PheGAA_iv 5_flank no 291 26.827878 311.347202 169.08754 2.228111606 -0.268642 117 84 11128 "rRNA(18S,5.8S,25S)" 18S yes 7956 2526 2539 207.360547 415.430237 311.395392 2.493312182 0.260136 117 85 10227 RUF6 RUF6 yes 1251 981 998 34.182926 287.860588 161.021757 2.206884561 0.150825 117 86 16935 YGR027C intron no 412 61 82 27.491148 306.557744 167.024446 2.22278004 -0.210051 117 87 9337 RUF1 RUF1 yes 750 261 277 29.745719 294.667657 162.206688 2.210068757 -0.037396 117 88 10199 RUF6 RUF6 yes 1251 841 858 29.932649 292.435251 161.18395 2.207321794 -0.016853 117 89 16046 YDL191W intron no 591 381 398 32.063864 299.412941 165.7384025 2.219423149 0.011553 117 90 3337 Thr3 ThrTGT_i tRNA yes 272 31 47 32.046041 309.373168 170.7096045 2.232257956 -0.051599 117 91 16963 YGR034W exon/intron no 454 41 60 31.915713 316.908492 174.4121025 2.241576617 -0.112759 117 92 17594 YJL191W intron no 508 401 420 43.826608 327.276498 185.551553 2.268464594 -0.134893 117 93 17414 YIL106W intron/exon no 185 121 137 49.500356 305.199606 177.349981 2.248831146 0.079367 117 94 20030 YBR181C spliced yes 40 9 25 37.152974 293.533297 165.3431355 2.218386169 0.139514 117 95 7083 snR63 5_flank no 455 36.962731 280.172935 158.567833 2.200215091 0.252513 117 96 2229 Phe1 PheGAA_i tRNA yes 292 21 33 50.80415 298.877184 174.840667 2.242642455 0.141012 117 97 4428 telomerase RNA telomerase yes 1501 1176 1197 34.08709 319.694915 176.8910025 2.247705743 -0.107139 117 98 14104 MT_COB bi4 no 7308 5746 5762 37.346012 308.472638 172.909325 2.237818415 0.00948 117 99 4603 snR3 5_flank no 395 31.669624 309.528395 170.5990095 2.231976505 -0.06254 117 100 18483 YMR194W 5_exon no 563 21 40 1097.208848 668.708946 882.958897 2.945940487 1.247628 117 101 16115 YDR064W intron no 639 221 237 34.37465 310.713827 172.5442385 2.236900462 -0.033241 117 102 8802 LSR1 / U2 RNA U2 yes 1375 651 667 34.647563 312.288663 173.468113 2.239219654 -0.04246 117 103 20781 YKL006W spliced yes 40 9 26 30.65636 327.843344 179.249852 2.253458806 -0.213262 117 104 9813 RUF4 3_flank no 988 32.885898 326.24959 179.567744 2.254228326 -0.17215 118 2 19011 YOR182C intron no 511 101 115 43.421591 272.625771 158.023681 2.198722174 0.368404 118 3 13745 MT_COB exon1 yes 7308 361 382 31.798129 338.557232 185.1776805 2.26758864 -0.277592 118 4 16530 YER131W intron no 461 221 240 27.976349 304.471723 166.224036 2.220693823 -0.173775 118 5 19146 YPL075W intron no 851 441 457 39.41757 302.509504 170.963537 2.232903494 0.068951 118 6 18453 YMR143W intron no 644 61 77 29.807724 297.8497 163.828712 2.214390017 -0.054997 118 7 17259 YHR101C intron no 187 61 80 31.585193 348.975324 190.2802585 2.279393733 -0.355276 118 8 9784 RUF4 RUF4 yes 988 696 717 31.397052 333.312803 182.3549275 2.260917503 -0.244267 118 9 21651 copy of SH8771 no 1375 40.506029 283.751777 162.128903 2.209860444 0.250295 118 10 2184 Met2 MetCAT_ii tRNA yes 272 51 65 92.916303 330.559344 211.7378235 2.325798445 0.137354 118 11 13485 MT_COX1 intronic no 13084 11476 11498 34.355128 327.268283 180.8117055 2.257226543 -0.163404 118 12 8617 snR19 / U1 RNA U1 yes 868 581 597 47.073147 273.376658 160.2249025 2.204730016 0.368895 118 13 16856 YGL183C 3_exon no 183 161 177 53.521622 376.2642 214.892911 2.332222089 -0.437533 118 14 3153 Ser4 SerGCT 3_flank no 301 45.416686 298.588759 172.0027225 2.235535321 0.121818 118 15 7126 snR63 snR63 yes 455 136 150 80.199677 353.086332 216.6430045 2.33574467 -0.097687 118 16 10035 RUF6 RUF6 yes 1251 21 40 29.348217 272.058653 150.703435 2.178123151 0.050495 118 17 14388 MT_21S 5_flank no 4639 31 57 33.410888 328.128929 180.7699085 2.257126138 -0.179788 118 18 17460 YIL148W intron no 534 301 317 29.893373 289.84662 159.8699965 2.203766965 -0.005245 118 19 787 Glu1 GluCTC 5_flank no 272 28.185243 291.879211 160.032227 2.204207449 -0.105971 118 20 13468 MT_COX1 intronic no 13084 11221 11243 28.336176 304.106763 166.2214695 2.220687117 -0.152321 118 21 11808 "rRNA(18S,5.8S,25S)" 25S yes 7956 5926 5945 55.664272 327.959233 191.8117525 2.282875213 -0.075677 118 22 17301 YHR203C 5_exon no 369 1 21 53.986127 330.759892 192.3730095 2.284144139 -0.106773 118 23 8118 snoRNA cluster 3; 5_flank/snR41 no 743 101 115 40.5412 300.777617 170.6594085 2.232130236 0.08756 118 24 4916 snR9 5_flank/snR9 no 387 30.977811 291.605962 161.2918865 2.207612522 0.024215 118 25 4387 telomerase RNA telomerase yes 1501 971 988 31.244201 308.351286 169.7977435 2.229931914 -0.069648 118 26 11242 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3096 3109 97.690862 400.983366 249.337114 2.396786928 -0.267872 118 27 9724 RUF4 RUF4 yes 988 396 408 39.837321 283.083343 161.460332 2.208065841 0.255365 118 28 159 Arg2 ArgACG_ii 5_flank no 273 31.901089 295.648978 163.7750335 2.214247697 0.029531 118 29 16474 YER102W intron no 460 121 139 31.949498 313.323501 172.6364995 2.237132621 -0.084204 118 30 8214 snoRNA cluster 3; snR51 yes 743 581 597 48.173916 307.721209 177.9475625 2.250292043 0.050976 118 31 6753 snR50 5_flank no 290 35.801531 260.365844 148.0836875 2.17050722 0.383968 118 32 12901 MT_COX1 intronic/exon2 no 13084 2716 2735 32.594333 326.774434 179.6843835 2.254510334 -0.17981 118 33 9494 RUF2 3_flank no 468 29.43195 291.081406 160.256678 2.204816136 -0.035076 118 34 19556 CBP1 2.2 CBP1 2.2 yes 401 221 242 33.303842 312.414361 172.8591015 2.237692251 -0.059833 118 35 11032 "rRNA(18S,5.8S,25S)" 18S yes 7956 2046 2059 2424.493396 3137.849547 2781.171472 3.444227766 -0.209173 118 36 4869 snR8 snR8 yes 390 126 140 45.224573 298.106875 171.665724 2.234683589 0.125644 118 37 14895 MT_Ile 5_flank/tRNA no 276 76 101 27.326108 324.724471 176.0252895 2.245575067 -0.304821 118 38 12627 MT_15S 15S yes 1848 1156 1182 27.380035 293.992236 160.6861355 2.205978406 -0.160612 118 39 14952 MT_Met tRNA yes 276 151 168 29.410804 256.278454 142.844629 2.154863915 0.128705 118 40 18548 YMR230W intron no 510 341 357 31.400316 302.387964 166.89414 2.222441088 -0.028487 118 41 6011 snR37 5_flank no 586 35.327623 325.272418 180.3000205 2.255995776 -0.143763 118 42 14857 MT_Ser2; Arg2 tRNASer yes 360 121 138 35.208045 341.401333 188.304689 2.274861135 -0.279294 118 43 1995 Lys3 LysTTT_i 5_flank no 296 55.017448 335.525325 195.2713865 2.29063861 -0.137945 118 44 15241 MT_fMet 5_flank no 274 46 72 27.092511 342.774137 184.933324 2.267015176 -0.413384 118 45 8262 snoRNA cluster4 5_flank/snR67 no 638 96 113 33.005539 295.667125 164.336332 2.215733589 0.064958 118 46 17870 YLL050C intron no 279 201 217 50.997045 373.514044 212.2555445 2.326859044 -0.436229 118 47 8423 snoRNA cluster 5 snR190/intergenic no 586 281 298 35.224822 306.191936 170.708379 2.232254838 0.013106 118 48 4209 telomerase RNA telomerase yes 1501 81 97 39.4516 285.836744 162.644172 2.211238506 0.227432 118 49 5078 snR11 5_flank/snR11 no 458 71.211419 363.672649 217.442034 2.337343502 -0.229578 118 50 21661 copy of SH9191 no 415 29.762684 292.032678 160.897681 2.206549785 -0.022058 118 51 12284 5S rRNA NTS2 no 1420 376 393 33.922449 303.031954 168.4772015 2.22654114 0.023144 118 52 20346 YER102W spliced yes 40 1 17 79.009874 345.548825 212.2793495 2.326907748 -0.055157 118 53 19499 YPT1 YPT1 yes 402 281 298 46.24989 356.16588 201.207885 2.303644996 -0.34424 118 54 2709 Pro5 ProTGG_iv 5_flank no 303 29.94804 269.800352 149.874196 2.175726866 0.093031 118 55 11292 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3346 3364 33.021726 297.790474 165.4061 2.218551522 0.052295 118 56 17261 YHR101C intron no 187 101 120 30.004359 303.959442 166.9819005 2.2226694 -0.085517 118 57 1971 Lys2 LysCTT_ii tRNA yes 273 56 68 48.46747 422.030671 235.2490705 2.371527916 -0.763171 118 58 14567 MT_21S 21S_rRNA3 yes 4639 2716 2732 66.053791 321.321716 193.6877535 2.287102162 0.037885 118 59 9487 RUF2 3_flank no 468 30.088696 305.422056 167.755376 2.224676447 -0.091424 118 60 7162 snR63 3_flank no 455 38.248963 281.139932 159.6944475 2.203289816 0.258162 118 61 13588 MT_COX1 3_flank no 13084 13021 13043 27.986859 336.488737 182.237798 2.260638459 -0.345395 118 62 20251 YDR381C-A spliced yes 40 17 36 29.936769 326.552593 178.244681 2.251016579 -0.219878 118 63 10988 "rRNA(18S,5.8S,25S)" 18S yes 7956 1826 1841 2645.232912 6931.806073 4788.519493 3.68020126 -1.410483 118 64 17390 YIL069C intron no 509 141 157 41.748972 305.558228 173.6536 2.239683791 0.046536 118 65 8479 snoRNA cluster 5 3_flank no 586 561 577 33.424119 293.63973 163.5319245 2.213602548 0.090786 118 66 19414 YPR132W 5_exon no 465 1 17 37.076031 303.293089 170.18456 2.230920156 0.056131 118 67 2524 Pro1 ProAGG 3_flank no 272 30.766874 290.775746 160.77131 2.206208551 0.02233 118 68 3604 Val1 ValAAC_i tRNA yes 274 16 30 41.995856 290.315795 166.1558255 2.220515572 0.189694 118 69 19475 ADH1 ADH1 yes 400 201 222 28.068904 298.854281 163.4615925 2.213415726 -0.143846 118 70 7948 snoRNA cluster1 3_flank no 1574 1536 1550 98.577623 307.507441 203.042532 2.307587021 0.338109 118 71 17179 YHR021C intron no 650 161 180 69.27978 353.652429 211.4661045 2.325240765 -0.175936 118 72 20847 YLR048W spliced yes 40 13 27 69.336771 305.373094 187.3549325 2.272665131 0.183769 118 73 16097 YDR059C exon/intron no 190 41 58 96.953534 402.882147 249.9178405 2.39779726 -0.283475 118 74 12694 MT_ORF 8 5_flank/ORF8 no 491 76 102 30.077139 305.152171 167.614655 2.224311987 -0.090198 118 75 19870 Negative Control no 60 NA #VALUE! 34.332142 311.61171 172.971926 2.237975621 -0.040884 118 76 21564 copy of SH5224 no 801 29.795082 281.930621 155.8628515 2.192742617 0.026512 118 77 14891 MT_Ile 5_flank no 276 16 44 27.03012 323.94469 175.487405 2.244245952 -0.311767 118 78 7447 snR69 3_flank no 301 31.003818 284.351265 157.6775415 2.19776984 0.071476 118 79 14825 MT_Lys; Arg1; Gly tRNAGly yes 682 556 570 28.9551 283.239339 156.0972195 2.193395167 -0.024088 118 80 2592 Pro3 ProTGG_ii 5_flank no 303 30.78452 306.581817 168.6831685 2.22707175 -0.074529 118 81 20755 YJR094W-A spliced yes 40 1 22 40.453924 345.378844 192.916384 2.285369113 -0.29397 118 82 18093 YLR367W intron no 583 81 98 30.644175 287.024236 158.8342055 2.200944035 0.042066 118 83 5183 snR13 snR13 yes 324 71 87 56.31855 333.975828 195.147189 2.2903623 -0.117899 118 84 17230 YHR077C intron no 213 81 95 34.885068 266.7353 150.810184 2.17843067 0.31239 118 85 11545 "rRNA(18S,5.8S,25S)" 25S yes 7956 4611 4626 8010.39178 10970.60532 9490.498551 3.977289027 -0.824903 118 86 17704 YKL081W intron no 426 81 98 29.537944 271.572236 150.55509 2.177695443 0.062891 118 87 12287 5S rRNA NTS2 no 1420 391 407 93.663536 335.180678 214.422107 2.331269559 0.110325 118 88 21572 copy of SH5387 no 425 44.279822 306.938824 175.609323 2.244547569 0.042553 118 89 1133 Gly4 GlyTCC 3_flank no 272 46.437891 328.799158 187.6185245 2.273275716 -0.132932 118 90 11152 "rRNA(18S,5.8S,25S)" 18S yes 7956 2646 2663 11764.73943 18612.2377 15188.48856 4.181514559 -1.235715 118 91 12488 5S rRNA NTS1 no 1420 1396 1415 33.929613 275.312803 154.621208 2.189269062 0.225116 118 92 16294 YDR450W intron no 535 161 180 37.726155 333.357167 185.541661 2.26844144 -0.206364 118 93 13950 MT_COB bi3 no 7308 3436 3457 33.420778 319.72451 176.572644 2.24692342 -0.115542 118 94 20417 YGL030W spliced yes 40 13 25 37.161523 291.400307 164.280915 2.215587113 0.157633 118 95 2733 Pro5 ProTGG_iv tRNA-intron no 303 i10 i25 56.893861 299.995029 178.444445 2.251503033 0.161515 118 96 17882 YLR048W intron no 459 161 178 40.96338 317.060092 179.011736 2.252881504 -0.057525 118 97 15021 MT_COX 2; ORF1 ORF1exon1 yes 2427 916 942 29.212483 324.153157 176.68282 2.247194322 -0.231874 118 98 4686 snR4 5_flank no 386 35.44264 318.722412 177.082526 2.248175708 -0.086628 118 99 6935 snR58 snR58 yes 296 36 52 33.767914 377.207038 205.487476 2.312785358 -0.561497 118 100 17554 YJL189W intron no 486 81 97 32.062393 327.26094 179.6616665 2.254455424 -0.1903 118 101 12331 5S rRNA NTS2 no 1420 611 628 34.405164 317.162527 175.7838455 2.244978961 -0.083639 118 102 3770 Val4 ValTAC 3_flank no 274 34.643814 293.509893 164.0768535 2.215047319 0.110758 118 103 7362 snR68 snR68 yes 336 31 45 149.577906 540.812318 345.195112 2.538064637 -0.557319 118 104 904 Glu3 GluTTC_ii tRNA yes 272 31 43 39.189102 288.136558 163.66283 2.213950057 0.204431 119 2 20007 YBR082C spliced yes 40 9 26 32.152293 286.82161 159.4869515 2.202725157 0.093532 119 3 5256 snR30 snR30 yes 801 131 145 51.735614 346.526375 199.1309945 2.299138863 -0.239952 119 4 10906 "rRNA(18S,5.8S,25S)" 18S yes 7956 1416 1434 60405.11935 21109.11624 40757.1178 4.610203465 0.558513 119 5 5962 snR36 snR36 yes 555 266 285 37.989399 295.049116 166.5192575 2.221464466 0.135352 119 6 5985 snR36 3_flank no 555 30.199237 289.817208 160.0082225 2.204142301 0.008964 119 7 20568 YHR010W spliced yes 40 13 29 37.760068 259.19866 148.479364 2.171666099 0.447857 119 8 406 Asn1 AsnGTT 3_flank no 274 29.901069 357.521347 193.711208 2.287154749 -0.437755 119 9 6520 snR46 snR46 yes 397 91 108 61.97494 351.498497 206.7367185 2.315417619 -0.210206 119 10 12983 MT_COX1 ai2 no 13084 3946 3963 32.219367 286.899898 159.5596325 2.202923027 0.095205 119 11 12479 5S rRNA 5S yes 1420 1351 1363 86.949326 322.326283 204.6378045 2.310985868 0.159724 119 12 9473 RUF2 RUF2 yes 468 206 224 36.459194 265.419902 150.939548 2.178803045 0.367578 119 13 9629 RUF4 5_flank no 988 34.577964 303.47092 169.024442 2.227949511 0.027491 119 14 10604 RUF8 RUF8/3_flank no 1151 50.536533 307.646506 179.0915195 2.253075021 0.063376 119 15 13834 MT_COB bi2 no 7308 1696 1717 31.179483 277.272953 154.226218 2.188158209 0.119262 119 16 6589 snR47 snR47 yes 299 51 70 621.454382 1191.346582 906.400482 2.957320128 -0.407632 119 17 15113 MT_COX 2; ORF1 ORF3exon3 yes 2427 2296 2322 35.456214 307.50158 171.478897 2.234210681 0.005269 119 18 3606 Val1 ValAAC_i tRNA yes 274 25 40 57.726093 302.779898 180.2529955 2.255882491 0.141905 119 19 16495 YER117W intron no 571 81 98 41.579616 309.02912 175.304368 2.243792737 0.014975 119 20 2511 Pro1 ProAGG tRNA yes 272 46 58 269.439543 490.763214 380.1013785 2.579899445 0.17911 119 21 8054 snoRNA cluster 2 intergenic no 739 506 528 28.352679 313.734056 171.0433675 2.233106238 -0.202918 119 22 10324 RUF7 RUF7 yes 700 231 247 39.149037 301.570084 170.3595605 2.231366511 0.077017 119 23 10813 "rRNA(18S,5.8S,25S)" 18S yes 7956 951 972 46.293392 326.663289 186.4783405 2.270628396 -0.116494 119 24 2900 Pro8 ProTGG_vii tRNA yes 305 22 37 32.916842 276.719538 154.81819 2.189821986 0.184089 119 25 18346 YML124C intron no 398 241 256 43.28163 293.645398 168.463514 2.226505855 0.160752 119 26 10937 "rRNA(18S,5.8S,25S)" 18S yes 7956 1571 1584 313.394192 649.886407 481.6402995 2.682722818 -0.175438 119 27 275 Arg4 ArgCCT 5_flank no 272 29.972624 287.020559 158.4965915 2.200019927 0.011917 119 28 18303 YML073C intron no 515 261 280 32.243208 304.240425 168.2418165 2.225933949 -0.012071 119 29 7007 snR60 3_flank no 304 32.354537 306.079934 169.2172355 2.228444596 -0.021184 119 30 13711 MT_Glu (and 5_flank processing site for COB) 3_flank no 368 196 220 30.283622 322.667228 176.475425 2.246684236 -0.185811 119 31 2907 Pro8 ProTGG_vii tRNA yes 305 i20 39 81.69316 353.492328 217.592744 2.337644409 -0.090414 119 32 20516 YGR029W spliced yes 40 25 40 34.088326 307.347588 170.717957 2.232279205 -0.009784 119 33 10365 RUF7 RUF7 yes 700 436 452 46.099944 297.170824 171.635384 2.234606826 0.137001 119 34 14752 MT_ORF11; Leu; Gln ORF11 yes 716 166 187 27.681038 310.015829 168.8484335 2.227497036 -0.214293 119 35 12826 MT_COX1 ai1 no 13084 1591 1610 35.632705 325.100963 180.366834 2.256156682 -0.141505 119 36 14979 MT_COX 2; ORF1 COX2 no 2427 286 307 29.558714 299.472333 164.5155235 2.216206884 -0.07376 119 37 3759 Val4 ValTAC tRNA yes 274 20:B 32 37.61904 268.346404 152.982722 2.184642384 0.366385 119 38 19199 YPL081W intron no 601 141 160 29.616348 292.080735 160.8485415 2.206417127 -0.029935 119 39 7066 snR62 3_flank no 300 37.730211 310.314888 174.0225495 2.240605527 -0.006223 119 40 16041 YDL191W intron no 591 281 297 32.69322 325.86545 179.279335 2.253530233 -0.171672 119 41 1200 Ile1 IleAAT 5_flank no 274 31.645264 269.348829 150.4970465 2.177527977 0.180912 119 42 5222 snR30 5_flank no 801 31.56163 248.786896 140.174263 2.146668281 0.282545 119 43 10684 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 306 322 29.458772 249.290416 139.374594 2.144183615 0.16243 119 44 15742 YCR028C intron no 183 101 120 29.378508 261.250365 145.3144365 2.162308762 0.105325 119 45 14634 MT_21S Sce1 no 4639 3721 3747 29.341374 309.929249 169.6353115 2.229516261 -0.144659 119 46 2029 Lys3 LysTTT_i tRNA/3_flank no 296 35.355836 311.60903 173.482433 2.239255504 -0.028697 119 47 478 Asp2 AspGTC_ii 5_flank no 272 29.439353 315.362679 172.401016 2.236539821 -0.173176 119 48 6234 snR42 5_flank no 551 78.230454 305.114705 191.6725795 2.282559988 0.237316 119 49 15042 MT_COX 2; ORF1 ORF1exon1 yes 2427 1231 1252 29.667922 264.749681 147.2088015 2.167933777 0.103594 119 50 712 Gln3 GlnTTG_ii 3_flank no 272 31.779786 251.863502 141.821644 2.151742515 0.276882 119 51 2856 Pro7 ProTGG_vi tRNA yes 303 56 70 69.763356 296.378892 183.071124 2.262619848 0.260486 119 52 13171 MT_COX1 intronic no 13084 6766 6788 27.79798 331.808519 179.8032495 2.254797536 -0.326678 119 53 19540 CBP1 1.2 CBP1 1.2 yes 401 301 317 50.149932 340.860548 195.50524 2.291158402 -0.206515 119 54 3132 Ser4 SerGCT tRNA yes 301 47 61 29.826883 275.15128 152.4890815 2.183238749 0.060581 119 55 15935 YDL115C intron no 189 61 80 29.856808 287.705411 158.7811095 2.200798832 0.002727 119 56 2967 Ser1 SerAGA_i tRNA yes 283 57 69 39.059721 268.826154 153.9429375 2.187359769 0.377532 119 57 11422 "rRNA(18S,5.8S,25S)" 25S yes 7956 3996 4013 431.797993 817.222883 624.510438 2.795539702 -0.207268 119 58 4585 U3b (snR17b) 3_flank no 662 30.022562 320.627381 175.3249715 2.243843777 -0.183175 119 59 3881 RNaseP 3_flank no 569 34.134203 304.516158 169.3251805 2.228721547 0.013646 119 60 10732 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 546 559 44.369416 287.061218 165.715317 2.219362652 0.226491 119 61 4409 telomerase RNA telomerase yes 1501 1081 1100 34.083228 288.033721 161.0584745 2.206983581 0.146668 119 62 6052 snR37 snR37 yes 586 176 194 33.992644 303.490239 168.7414415 2.227221755 0.020265 119 63 20551 YGR225W spliced yes 40 17 34 31.830812 293.156946 162.493879 2.210837006 0.042813 119 64 839 Glu2 GluTTC_i 5_flank no 272 31.654808 278.294119 154.9744635 2.190260142 0.132818 119 65 19987 YBL092W spliced yes 40 5 23 35.426763 312.9803 174.2035315 2.241056955 -0.038719 119 66 3791 RNaseP 5_flank no 569 29.160835 275.556517 152.358676 2.18286719 0.023531 119 67 4229 telomerase RNA telomerase yes 1501 181 198 30.807516 294.166855 162.4871855 2.210819116 0.00236 119 68 1169 His1 HisGTG tRNA/3_flank no 272 32.391051 318.719499 175.555275 2.244413883 -0.12072 119 69 3780 Val4 ValTAC 3_flank no 274 28.205004 291.208333 159.7066685 2.20332305 -0.101818 119 70 13169 MT_COX1 intronic no 13084 6736 6755 31.774455 307.181766 169.4781105 2.229113613 -0.045078 119 71 19670 SIR1 2.4 SIR1 2.4 yes 401 121 133 175.390835 574.726284 375.0585595 2.574099081 -0.533907 119 72 1876 Leu9 LeuTAG_ii 3_flank no 301 33.614974 269.454971 151.5349725 2.180512874 0.254985 119 73 7118 snR63 snR63 yes 455 96 117 30.026138 322.677396 176.351767 2.246379816 -0.194785 119 74 4023 SRP SRP yes 875 6 22 63.395091 299.481651 181.438371 2.258729138 0.199989 119 75 8130 snoRNA cluster 3; snR41 yes 743 161 178 26.778475 299.722123 163.250299 2.212853985 -0.220834 119 76 12483 5S rRNA NTS1 no 1420 1371 1397 34.894144 278.658969 156.7765565 2.195281121 0.232144 119 77 9455 RUF2 RUF2 yes 468 116 133 31.099084 277.256185 154.1776345 2.188021378 0.115331 119 78 9713 RUF4 RUF4 yes 988 341 359 29.123928 303.461211 166.2925695 2.220872844 -0.113596 119 79 10538 RUF8 RUF8 yes 1151 616 633 29.021857 316.457169 172.739513 2.237391691 -0.19447 119 80 19780 Negative Control no 60 NA #VALUE! 52.531952 296.587061 174.5595065 2.241943505 0.169531 119 81 21926 copy of SH20401 no 40 45.43488 303.4594 174.44714 2.241663854 0.077492 119 82 21463 copy of SH809 no 272 48.35038 277.301599 162.8259895 2.211723726 0.333607 119 83 4797 snR5 snR5 yes 404 156 177 30.790816 308.964846 169.877831 2.230136707 -0.088571 119 84 11352 "rRNA(18S,5.8S,25S)" 25S yes 7956 3646 3661 24447.90663 12398.07118 18422.98891 4.265360091 0.334086 119 85 728 Gln4 GlnTTG_iii 5_flank no 272 51.331427 298.141032 174.7362295 2.24238296 0.150058 119 86 21504 copy of SH2796 no 302 91.103449 340.095516 215.5994825 2.333647714 0.060493 119 87 11676 "rRNA(18S,5.8S,25S)" 25S yes 7956 5266 5279 345.57311 1279.895638 812.734374 2.909948628 -1.235526 119 88 13346 MT_COX1 ai5a no 13084 9391 9413 28.006576 301.401937 164.7042565 2.216704823 -0.158603 119 89 10611 RUF8 3_flank no 1151 50.649661 293.224382 171.9370215 2.235369399 0.19067 119 90 7386 snR68 3_flank no 336 34.152542 305.650857 169.9016995 2.230197723 0.004676 119 91 10494 RUF8 RUF8 yes 1151 396 414 38.071366 337.742908 187.907137 2.273943276 -0.24129 119 92 9409 RUF1 3_flank no 750 31.751012 265.957118 148.854065 2.172760699 0.20297 119 93 18944 YOL127W intron no 514 61 78 35.529775 308.724682 172.1272285 2.235849576 -0.003683 119 94 16311 YDR450W 3_exon no 535 501 517 35.301809 288.135004 161.7184065 2.208759453 0.164224 119 95 18185 YML024W 5_exon no 498 1 20 33.180579 331.701761 182.44117 2.261122849 -0.209415 119 96 19580 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 301 318 33.179568 289.032057 161.1058125 2.20711121 0.112238 119 97 17467 YIL148W intron no 534 441 458 37.304229 274.40018 155.8522045 2.19271295 0.307773 119 98 1067 Gly3 GlyGCC tRNA3_flank no 271 35.563146 286.849167 161.2061565 2.207381624 0.178332 119 99 11503 "rRNA(18S,5.8S,25S)" 25S yes 7956 4401 4417 25819.59229 8388.05872 17103.82551 4.233093257 1.05055 119 100 9517 RUF3 5_flank no 631 32.111266 270.437252 151.274259 2.179765034 0.198256 119 101 9562 RUF3 RUF3 yes 631 196 212 35.456971 285.915974 160.6864725 2.205979317 0.185147 119 102 2799 Pro6 ProTGG_v tRNA yes 302 57 71 52.419666 282.64081 167.530238 2.224093205 0.296148 119 103 16237 YDR381W intron no 866 641 658 49.544135 400.79921 225.1716725 2.352513754 -0.624815 119 104 18376 YMR116C 5_exon no 373 21 36 32.777201 281.905692 157.3414465 2.196843138 0.145462 120 2 11090 "rRNA(18S,5.8S,25S)" 18S yes 7956 2336 2349 265.218714 423.2033 344.211007 2.536824754 0.44916 120 3 1832 Leu9 LeuTAG_ii 5_flank no 301 32.510096 291.361277 161.9356865 2.209342567 0.076175 120 4 15738 YCR028C 5_exon no 183 21 40 32.541845 311.349072 171.9454585 2.23539071 -0.060976 120 5 17122 YHR010W intron no 661 161 178 30.594289 299.971181 165.282735 2.218227491 -0.040867 120 6 20017 YBR089C-A spliced yes 40 1 15 36.408788 282.353285 159.3810365 2.202436647 0.227103 120 7 6345 snR43 5_flank no 409 32.401403 299.739208 166.0703055 2.220291985 0.020483 120 8 3633 Val2 ValAAC_ii 5_flank no 274 30.296214 351.899545 191.0978795 2.281255868 -0.39315 120 9 7502 snR71 3_flank no 290 30.07614 291.402676 160.739408 2.206122364 -0.005346 120 10 18445 YMR142C intron no 502 401 418 41.252344 345.855981 193.5541625 2.286802516 -0.294973 120 11 19041 YOR234C intron no 627 201 217 37.170368 292.483969 164.8271685 2.217028798 0.148558 120 12 21499 copy of SH2549 no 303 31.355588 291.966151 161.6608695 2.20860491 0.0346 120 13 2441 Phe5 PheGAA_v 5_flank no 291 42.58623 350.520127 196.5531785 2.293480071 -0.323067 120 14 680 Gln3 GlnTTG_ii 5_flank no 272 33.257044 326.140562 179.698803 2.254545184 -0.166678 120 15 4865 snR8 snR8 yes 390 106 121 48.563798 295.033856 171.798827 2.235020194 0.164212 120 16 11022 "rRNA(18S,5.8S,25S)" 18S yes 7956 1996 2009 37142.11428 34373.38407 35757.74918 4.553370174 -0.846799 120 17 12945 MT_COX1 ai2 no 13084 3376 3396 31.833507 305.617401 168.725454 2.227180605 -0.033739 120 18 13112 MT_COX1 ai3 no 13084 5881 5907 31.923202 322.678431 177.3008165 2.248710736 -0.157252 120 19 11452 "rRNA(18S,5.8S,25S)" 25S yes 7956 4146 4164 16385.73672 26725.48416 21555.61044 4.333560326 -1.431898 120 20 140 Arg1 ArgACG_i 3_flank no 273 31.996147 312.907571 172.451859 2.23666788 -0.080318 120 21 19938 YBL027W spliced yes 40 9 26 53.266341 367.20645 210.2363955 2.322707902 -0.377626 120 22 18916 YOL120C 3_exon no 547 521 537 36.081712 296.247988 166.16485 2.22053916 0.104649 120 23 15690 YBR191W 3_exon no 488 441 456 36.381477 291.538666 163.9600715 2.214738099 0.147676 120 24 11278 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3276 3296 30.902898 296.885775 163.8943365 2.214563946 -0.011351 120 25 18816 YNL302C intron no 651 141 158 31.33479 321.611696 176.473243 2.246678867 -0.156772 120 26 10003 RUF5-1 3_flank no 975 31.790641 301.012686 166.4016635 2.221157664 -0.007194 120 27 9934 RUF5-1 RUF5-1 yes 975 476 495 32.205728 295.58243 163.894079 2.214563264 0.03987 120 28 5906 snR36 5_flank/snR36 no 555 30.453288 302.169513 166.3114005 2.220922021 -0.059135 120 29 4279 telomerase RNA telomerase yes 1501 431 448 30.617288 300.570517 165.5939025 2.219044341 -0.043758 120 30 13622 MT_ATP6 ATP6 yes 980 136 156 30.645055 291.505046 161.0750505 2.207028276 0.013575 120 31 18749 YNL162W intron no 612 301 320 34.709419 289.710002 162.2097105 2.210076849 0.143745 120 32 2421 Phe4 PheGAA_iv 3_flank no 291 30.398686 295.333169 162.8659275 2.211830237 -0.018875 120 33 17602 YJL205C intron no 243 61 78 30.208722 281.098271 155.6534965 2.192158881 0.051871 120 34 15594 YBR089C exon/intron no 214 41 57 33.087305 294.680026 163.8836655 2.214535669 0.073699 120 35 16124 YDR064W intron no 639 401 416 34.966028 287.747536 161.356782 2.207787224 0.163593 120 36 1215 Ile1 IleAAT tRNA yes 274 35 49 69.600147 346.181007 207.890577 2.317834805 -0.122469 120 37 9486 RUF2 3_flank no 468 31.81404 297.78022 164.79713 2.216949644 0.013453 120 38 18527 YMR225C intron no 247 161 178 33.878087 286.99551 160.4367985 2.205303987 0.147013 120 39 14008 MT_COB intronic no 7308 4306 4328 29.876747 278.324981 154.100864 2.187805074 0.047905 120 40 7219 snR64 3_flank no 301 31.945473 311.116652 171.5310625 2.234342778 -0.066789 120 41 16870 YGL187C intron no 442 261 280 31.94098 338.437837 185.1894085 2.267616145 -0.274865 120 42 6618 snR48 5_flank no 313 33.918614 264.529773 149.2241935 2.17383924 0.29834 120 43 21319 YPL249C-A spliced yes 40 17 33 35.855654 310.209467 173.0325605 2.238127834 -0.01176 120 44 20535 YGR148C spliced yes 40 21 38 39.805522 335.882395 187.8439585 2.273797232 -0.219795 120 45 13290 MT_COX1 ai5a no 13084 8551 8577 35.681354 363.350755 199.5160545 2.299977848 -0.45099 120 46 755 Gln4 GlnTTG_iii tRNA yes 272 46 58 37.672973 254.944957 146.308965 2.165270938 0.475911 120 47 7136 snR63 snR63 yes 455 186 202 570.703322 762.685634 666.694478 2.823926858 0.239199 120 48 7686 snoRNA cluster1 intergenic no 1574 226 247 29.667468 345.079213 187.3733405 2.272707799 -0.353465 120 49 17692 YKL006W intron no 498 341 360 30.71787 296.888521 163.8031955 2.21432237 -0.017639 120 50 11840 "rRNA(18S,5.8S,25S)" 25S yes 7956 6086 6101 299.202027 565.996798 432.5994125 2.636085925 0.021474 120 51 7292 snR66 5_flank no 286 29.712165 300.990683 165.351424 2.218407939 -0.077665 120 52 312 Arg4 ArgCCT 3_flank no 272 35.731196 298.712041 167.2216185 2.223292423 0.080137 120 53 7807 snoRNA cluster1 intergenic no 1574 831 850 33.678589 324.470165 179.074377 2.253033449 -0.148772 120 54 17140 YHR010W intron no 661 521 540 29.651389 304.057941 166.854665 2.222338353 -0.09847 120 55 3087 Ser3 SerCGA 3_flank no 301 33.724136 302.399181 168.0616585 2.225468645 0.025882 120 56 11999 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6881 6899 43.950876 347.233623 195.5922495 2.291351642 -0.290453 120 57 11867 "rRNA(18S,5.8S,25S)" 25S yes 7956 6221 6238 633.85099 1531.943842 1082.897416 3.034587317 -0.798147 120 58 10825 "rRNA(18S,5.8S,25S)" 18S yes 7956 1011 1030 34.01073 295.891074 164.950902 2.217354695 0.083153 120 59 18632 YNL096C intron no 445 261 282 30.002638 332.329678 181.166158 2.258077074 -0.255777 120 60 8585 snR19 / U1 RNA U1 yes 868 421 438 32.063141 319.492688 175.7779145 2.244964308 -0.130921 120 61 9615 RUF3 3_flank no 631 30.004557 314.557442 172.2809995 2.236237383 -0.148611 120 62 16461 YER093C 5_exon no 175 21 35 60.61847 327.862981 194.2407255 2.288340292 -0.044931 120 63 5352 snR30 3_flank no 801 31.855924 316.887274 174.371599 2.24147575 -0.113369 120 64 9978 RUF5-1 RUF5-1 yes 975 696 715 29.672744 318.922954 174.297849 2.241292028 -0.1856 120 65 10243 RUF6 3_flank no 1251 35.469956 293.628977 164.5494665 2.216296479 0.119514 120 66 9429 RUF2 5_flank/RUF2 no 468 33.176649 345.649531 189.41309 2.277409989 -0.319274 120 67 19393 YPR043W intron/exon no 503 441 458 36.789674 302.528915 169.6592945 2.229577657 0.060846 120 68 4105 SRP SRP yes 875 416 428 67.835084 315.273392 191.554238 2.282291765 0.095904 120 69 14398 MT_21S 21S_rRNA3 yes 4639 181 205 28.378357 313.04106 170.7097085 2.232258221 -0.197901 120 70 18133 YLR406C exon/intron no 449 41 57 32.997771 285.72393 159.3608505 2.202381639 0.127696 120 71 21938 copy of SH19621 no 401 28.146718 316.634646 172.390682 2.236513788 -0.227475 120 72 6487 snR46 5_flank no 397 30.135873 283.183809 156.659841 2.194957681 0.038277 120 73 645 Gln2 GlnTTG_i tRNA yes 272 11 28 32.268014 325.624697 178.9463555 2.252722858 -0.175266 120 74 4792 snR5 snR5 yes 404 131 150 30.613995 305.861932 168.2379635 2.225924003 -0.076001 120 75 10285 RUF7 RUF7 yes 700 36 53 34.835248 312.414828 173.625038 2.239612354 -0.041222 120 76 17754 YKL157W intron no 483 221 238 33.100732 280.522566 156.811649 2.195378322 0.164774 120 77 6133 snR39B snR39B yes 296 6 20 78.232036 332.091246 205.161641 2.312096164 0.034092 120 78 950 Gly1 GlyCCC_i tRNA yes 272 1 15 819.867644 1099.651055 959.7593495 2.982162351 0.066176 120 79 17685 YKL006W intron no 498 201 218 33.06514 322.189014 177.627077 2.249509169 -0.138948 120 80 6439 snR45 snR45 yes 372 41 57 34.885257 286.842162 160.8637095 2.206458079 0.170423 120 81 10778 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 776 793 40.67801 300.255927 170.4669685 2.231640238 0.092718 120 82 10983 "rRNA(18S,5.8S,25S)" 18S yes 7956 1801 1821 43.627071 318.809416 181.2182435 2.258201917 -0.063645 120 83 10168 RUF6 RUF6 yes 1251 686 700 56.69592 298.788507 177.7422135 2.249790584 0.170913 120 84 12386 5S rRNA NTS2 no 1420 886 903 35.133812 308.355309 171.7445605 2.234882991 -0.005365 120 85 5920 snR36 snR36 yes 555 56 73 31.456255 278.713508 155.0848815 2.190569463 0.123475 120 86 21309 YPL241C spliced yes 40 5 21 41.905511 318.599284 180.2523975 2.25588105 -0.06757 120 87 18909 YOL120C intron no 547 381 396 48.413016 273.122052 160.767534 2.20619835 0.375448 120 88 14141 MT_COB intronic no 7308 6301 6329 28.120082 330.489571 179.3048265 2.25359198 -0.307314 120 89 7138 snR63 snR63 yes 455 196 213 40.525042 316.948002 178.736522 2.252213303 -0.058087 120 90 3238 Thr1 ThrAGT tRNA yes 273 46 62 34.311261 309.714393 172.012827 2.235560833 -0.026043 120 91 4384 telomerase RNA telomerase yes 1501 956 973 38.27572 292.55315 165.414435 2.218573406 0.159775 120 92 390 Asn1 AsnGTT tRNA yes 274 30 46 49.284127 337.231379 193.257753 2.286136926 -0.183973 120 93 719 Gln3 GlnTTG_ii 3_flank no 272 62.19172 301.329713 181.7607165 2.259500026 0.177594 120 94 21708 copy of SH11083 no 7956 26525.45215 11446.26177 18985.85696 4.278430205 0.566621 120 95 8537 snR19 / U1 RNA U1 yes 868 181 202 31.400962 315.360468 173.380715 2.23900079 -0.10739 120 96 9290 RUF1 RUF1 yes 750 26 42 33.370376 298.590936 165.980656 2.220057477 0.052836 120 97 20648 YIL004C spliced yes 40 5 21 37.474929 289.515006 163.4949675 2.213504389 0.177152 120 98 1429 Leu2 LeuCAA_ii 5_flank no 314 32.654176 310.370133 171.5121545 2.234294902 -0.051766 120 99 1958 Lys2 LysCTT_ii 5_flank/tRNA no 273 31.888983 332.597659 182.243321 2.260651621 -0.232521 120 100 14387 MT_21S 5_flank no 4639 16 42 30.095111 354.526603 192.310857 2.284003803 -0.414288 120 101 5251 snR30 snR30 yes 801 106 122 31.334026 265.48463 148.409328 2.171461199 0.184797 120 102 798 Glu1 GluCTC tRNA yes 272 6 22 833.441564 755.523242 794.482403 2.900084282 0.709288 120 103 586 Gln1 GlnCTG 5_flank no 272 30.584459 295.224777 162.904618 2.211933396 -0.011837 120 104 3191 Ser5 SerTGA tRNA/3_flank no 282 34.882625 312.567373 173.724999 2.239862318 -0.041865 121 2 7523 snR79 5_flank no 284 32.71589 327.746466 180.231178 2.255829921 -0.185609 121 3 13240 MT_COX1 ai4 no 13084 7801 7823 28.814822 337.057402 182.936112 2.262299445 -0.31806 121 4 10749 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 631 646 54.665508 301.40158 178.033544 2.250501837 0.13755 121 5 12680 MT_Trp tRNA yes 274 121 140 30.861508 292.044911 161.4532095 2.208046683 0.017518 121 6 2295 Phe2 PheGAA_ii tRNA yes 292 52 68 40.702691 290.614014 165.6583525 2.219213338 0.18397 121 7 1407 Leu1 LeuCAA_i tRNA/3_flank no 315 30.780624 298.661978 164.721301 2.216749764 -0.026474 121 8 11902 "rRNA(18S,5.8S,25S)" 25S yes 7956 6396 6411 380.250962 1392.090163 886.1705625 2.947517319 -1.263773 121 9 18280 YML056C 3_exon no 508 481 497 39.203574 310.791102 174.997338 2.243031442 -0.00701 121 10 17813 YKR057W intron no 422 121 142 30.255616 360.727361 195.4914885 2.291127853 -0.454937 121 11 14313 MT_VAR1 VAR1 yes 1467 901 923 28.153873 274.574374 151.3641235 2.18002295 -0.026316 121 12 2551 Pro2 ProTGG_i 5_flank/tRNA no 303 54.805751 301.93589 178.3708205 2.25132381 0.133725 121 13 3149 Ser4 SerGCT 3_flank no 301 35.587051 307.67528 171.6311655 2.234596152 0.005398 121 14 9260 snR6 / U6 RNA 3_flank no 312 29.908123 309.513319 169.710721 2.229709279 -0.122209 121 15 16190 YDR367W 3_exon no 201 181 197 35.711929 300.697821 168.204875 2.225838579 0.063539 121 16 7748 snoRNA cluster1 intergenic/snR76 no 1574 536 555 30.064234 280.333852 155.199043 2.190889039 0.048048 121 17 7839 snoRNA cluster1 snR74 yes 1574 991 1008 32.020423 287.284646 159.6525345 2.203175817 0.08627 121 18 4262 telomerase RNA telomerase yes 1501 346 363 33.924187 297.92363 165.9239085 2.219908969 0.06518 121 19 8134 snoRNA cluster 3; snR41 yes 743 181 198 40.58349 298.691822 169.637656 2.229522263 0.107098 121 20 17689 YKL006W intron no 498 281 298 30.019291 314.386216 172.2027535 2.236040091 -0.147096 121 21 14278 MT_VAR1 VAR1 yes 1467 376 388 30.055728 286.495914 158.275821 2.199414575 0.018655 121 22 4606 snR3 5_flank no 395 32.122449 291.676141 161.899295 2.209244958 0.061661 121 23 9578 RUF3 RUF3 yes 631 276 293 30.476816 282.487144 156.48198 2.194464333 0.059037 121 24 16339 YDR500C intron no 439 61 78 50.58797 360.163097 205.3755335 2.312548705 -0.346526 121 25 5621 snR34 snR34 yes 750 26 42 36.344859 301.051161 168.69801 2.22710996 0.067911 121 26 13623 MT_ATP6 ATP6 yes 980 151 170 29.840559 308.497893 169.169226 2.228321362 -0.118521 121 27 2558 Pro2 ProTGG_i tRNA/intron no 303 27 i2 32.337307 278.959547 155.648427 2.192144736 0.150696 121 28 21629 copy of SH7929 no 1574 30.628649 322.905397 176.767023 2.247401248 -0.176131 121 29 16362 YEL012W intron no 223 81 98 30.840741 295.981186 163.4109635 2.213281191 -0.007835 121 30 13478 MT_COX1 intronic no 13084 11371 11395 30.908046 327.629079 179.2685625 2.253504136 -0.208261 121 31 1745 Leu7 LeuTAA tRNA yes 284 20:B 32 129.871571 362.876898 246.3742345 2.391595288 0.151297 121 32 14875 MT_Ala 5_flank no 276 31 57 30.697371 333.944808 182.3210895 2.260836907 -0.25828 121 33 12886 MT_COX1 ai1 no 13084 2491 2510 30.498418 320.599277 175.5488475 2.244397983 -0.166593 121 34 21532 copy of SH3752 no 274 32.349554 284.255285 158.3024195 2.199487553 0.116467 121 35 15446 YBL087C intron no 604 81 102 30.116533 312.238947 171.17774 2.233447288 -0.131101 121 36 1091 Gly4 GlyTCC 5_flank no 272 58.700345 367.107029 212.903687 2.328183182 -0.340113 121 37 14421 MT_21S 21S_rRNA3 yes 4639 526 547 31.991137 313.866744 172.9289405 2.237867681 -0.087946 121 38 10902 "rRNA(18S,5.8S,25S)" 18S yes 7956 1396 1414 33116.09822 26643.70549 29879.90186 4.475379167 -0.564859 121 39 11775 "rRNA(18S,5.8S,25S)" 25S yes 7956 5761 5777 182.813041 362.377287 272.595164 2.435518147 0.424383 121 40 10560 RUF8 RUF8 yes 1151 726 744 32.153873 266.181634 149.1677535 2.173674949 0.221437 121 41 15331 YAL003W 3_exon no 466 421 436 44.512798 301.77392 173.143359 2.238405839 0.089849 121 42 17508 YJL136C intron no 560 121 133 127.864956 369.031888 248.448422 2.395236243 0.103684 121 43 6729 snR49 3_flank no 365 36.184208 273.540218 154.862213 2.189945461 0.302908 121 44 12656 MT_15S 15S yes 1848 1591 1617 34.03993 307.631991 170.8359605 2.232579294 -0.012658 121 45 14917 MT_Tyr tRNA yes 284 151 168 33.943247 276.687818 155.3155325 2.19121489 0.216363 121 46 3826 RNaseP RNaseP yes 569 96 110 89.723992 389.622397 239.6731945 2.379619464 -0.258873 121 47 1567 Leu4 LeuCAA_iv tRNA yes 314 6 19 48074.42997 13483.00552 30778.71774 4.488250523 1.022507 121 48 3616 Val1 ValAAC_i 3_flank no 274 31.761335 305.356354 168.5588445 2.226751545 -0.034536 121 49 2969 Ser1 SerAGA_i tRNA/3_flank no 283 35.766654 284.6144 160.190527 2.20463683 0.200023 121 50 14037 MT_COB bi4 no 7308 4741 4765 29.643913 280.099581 154.871747 2.189972197 0.027285 121 51 18943 YOL127W exon/intron no 514 41 55 41.642873 289.24865 165.4457615 2.218655646 0.199213 121 52 733 Gln4 GlnTTG_iii 5_flank no 272 32.481726 346.671286 189.576506 2.277784515 -0.329454 121 53 1834 Leu9 LeuTAG_ii 5_flank no 301 35.418191 285.643556 160.5308735 2.205558569 0.187049 121 54 365 Asn1 AsnGTT 5_flank no 274 31.409304 320.712861 176.0610825 2.245663368 -0.148872 121 55 20116 YDL075W spliced yes 40 13 29 33.46745 272.40264 152.935045 2.184507015 0.23036 121 56 3075 Ser3 SerCGA tRNA yes 301 52 64 37.610042 289.83928 163.724661 2.2141141 0.175875 121 57 213 Arg3 ArgCCG 5_flank no 272 31.717514 276.64972 154.183617 2.18803823 0.145796 121 58 7475 snR71 5_flank/snR71 no 290 31.85815 296.303591 164.0808705 2.215057951 0.024052 121 59 16768 YGL103W exon/intron no 611 41 55 48.30719 301.327803 174.8174965 2.242584897 0.107078 121 60 10074 RUF6 RUF6 yes 1251 216 230 34.081163 288.283744 161.1824535 2.207317762 0.145007 121 61 7952 snoRNA cluster1 3_flank no 1574 1556 1570 30.020896 278.744877 154.3828865 2.188599157 0.053376 121 62 4083 SRP SRP yes 875 306 318 54.541668 290.861046 172.701357 2.23729575 0.230215 121 63 14566 MT_21S 21S_rRNA3 yes 4639 2701 2718 35.99114 315.287274 175.639207 2.244621468 -0.054948 121 64 7694 snoRNA cluster1 intergenic no 1574 266 283 61.249937 325.551053 193.400495 2.286457581 -0.02334 121 65 2423 Phe4 PheGAA_iv 3_flank no 291 31.554371 254.069653 142.812012 2.154764738 0.254208 121 66 18018 YLR306W 5_exon no 234 21 42 31.292871 331.710154 181.5015125 2.258880248 -0.233731 121 67 21387 Phe1_5 spliced yes 40 9 23 62.782096 320.297375 191.5397355 2.282258883 0.026615 121 68 20199 YDR025W spliced yes 40 1 15 50.375842 281.005313 165.6905775 2.219297812 0.303058 121 69 11404 "rRNA(18S,5.8S,25S)" 25S yes 7956 3906 3919 5051.607636 7396.437814 6224.022725 3.79407117 -0.729543 121 70 12413 5S rRNA NTS2 no 1420 1021 1035 55.635235 302.397842 179.0165385 2.252893155 0.134226 121 71 19284 YPL143W intron/exon no 625 561 581 36.138068 285.332917 160.7354925 2.206111785 0.19807 121 72 9771 RUF4 RUF4 yes 988 631 648 52.80508 322.97524 187.89016 2.273904036 -0.051683 121 73 373 Asn1 AsnGTT 5_flank no 274 28.660045 348.57444 188.6172425 2.275581391 -0.392675 121 74 15527 YBR048W intron no 611 501 522 28.882789 288.054 158.4683945 2.199942658 -0.050419 121 75 14659 MT_21S 21S_rRNA4 yes 4639 4096 4113 35.040192 293.540558 164.290375 2.215612121 0.115211 121 76 1881 Leu9 LeuTAG_ii 3_flank no 301 178.177997 448.713914 313.4459555 2.49616267 -0.029107 121 77 17062 YGR214W intron no 555 381 397 76.555788 343.191741 209.8737645 2.321958153 -0.055319 121 78 13531 MT_COX1 intronic no 13084 12166 12190 31.318721 301.183706 166.2512135 2.220764824 -0.023857 121 79 4127 SRP SRP yes 875 526 540 63.230759 305.744332 184.4875455 2.265967053 0.146733 121 80 10700 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 386 403 35.082866 305.242267 170.1625665 2.230864027 0.01911 121 81 6105 snR37 3_flank no 586 29.079285 286.952631 158.015958 2.198700948 -0.034783 121 82 15980 YDL136W intron no 505 181 197 31.072931 301.506405 166.289668 2.220865266 -0.034056 121 83 2466 Phe5 PheGAA_v 3_flank no 291 29.21124 304.496236 166.853738 2.222335941 -0.116739 121 84 4152 SRP SRP yes 875 651 667 55.540322 328.561498 192.05091 2.283416369 -0.081088 121 85 19046 YOR234C intron no 627 301 318 1826.746535 1521.36269 1674.054613 3.223769622 0.579728 121 86 20074 YCR028C-A spliced yes 40 21 37 31.975917 300.17132 166.0736185 2.220300648 0.004028 121 87 13265 MT_COX1 ai4 no 13084 8176 8197 28.128429 306.909519 167.518974 2.224064004 -0.175971 121 88 7656 snoRNA cluster1 5_flank no 1574 76 93 38.599336 293.100126 165.849731 2.219714771 0.155324 121 89 391 Asn1 AsnGTT tRNA yes 274 35 51 34.560277 285.289831 159.925054 2.203916506 0.178806 121 90 629 Gln2 GlnTTG_i 5_flank no 272 28.359531 312.403904 170.3817175 2.231422992 -0.194843 121 91 3444 Trp1 TrpCCA tRNA yes 306 i15 i32 36.522454 301.567376 169.044915 2.228002111 0.065695 121 92 16050 YDL191W intron no 591 461 479 30.184602 303.969621 167.0771115 2.222916958 -0.079324 121 93 5708 snR34 snR34 yes 750 461 481 27.955594 310.573558 169.264576 2.228566078 -0.201351 121 94 10455 RUF8 RUF8 yes 1151 201 217 38.904452 294.734621 166.8195365 2.22224691 0.140505 121 95 14766 MT_ORF11; Leu; Gln ORF11 yes 716 376 404 27.619666 294.2491 160.934383 2.206648839 -0.148235 121 96 4189 telomerase RNA 5_flank no 1501 39.601482 316.191179 177.8963305 2.25016699 -0.054219 121 97 177 Arg2 ArgACG_ii tRNA yes 273 1 13 73.177726 258.601177 165.8894515 2.219818771 0.622303 121 98 15756 YCR031C intron no 407 201 218 31.709023 323.725754 177.7173885 2.249729923 -0.168048 121 99 10343 RUF7 RUF7 yes 700 326 345 31.906604 291.064572 161.485588 2.208133769 0.058485 121 100 2187 Met2 MetCAT_ii tRNA/3_flank no 272 30.087523 292.608538 161.3480305 2.207763669 -0.012554 121 101 16849 YGL183C 5_exon no 183 21 40 30.288727 326.11025 178.1994885 2.250906453 -0.205177 121 102 2741 Pro5 ProTGG_iv tRNA yes 303 56 70 56.591231 297.860515 177.225873 2.248527124 0.178417 121 103 9237 snR6 / U6 RNA U6 yes 312 56 70 41.088661 279.297434 160.1930475 2.204643663 0.295809 121 104 8198 snoRNA cluster 3; intergenic no 743 501 518 32.800197 341.665012 187.2326045 2.272381479 -0.28792 122 2 16333 YDR471W intron/exon no 484 421 437 44.959256 330.564894 187.762075 2.273607876 -0.155018 122 3 17430 YIL133C intron no 390 81 97 36.929504 271.484931 154.2072175 2.188104701 0.329989 122 4 2448 Phe5 PheGAA_v tRNA yes 291 11 25 91.336439 349.59321 220.4648245 2.343339307 -0.001068 122 5 19047 YOR234C intron no 627 321 338 34.996362 294.907356 164.951859 2.217357214 0.103212 122 6 8409 snoRNA cluster 5 snR190 yes 586 211 233 31.034911 327.052343 179.043627 2.252958867 -0.202211 122 7 17167 YHR016C intron no 268 181 202 32.969302 269.373289 151.1712955 2.179469335 0.235291 122 8 11525 "rRNA(18S,5.8S,25S)" 25S yes 7956 4511 4531 36.809496 296.598835 166.7041655 2.221946452 0.109993 122 9 3482 Tyr1 TyrGTA_i 5_flank no 289 30.760058 306.285962 168.52301 2.226659207 -0.073581 122 10 3162 Ser5 SerTGA 5_flank no 282 40.343457 318.908049 179.625753 2.254368602 -0.075637 122 11 12709 MT_ORF 8 ORF8 yes 491 301 324 28.50198 313.842531 171.1722555 2.233433373 -0.19807 122 12 9357 RUF1 RUF1 yes 750 361 382 29.35856 280.666752 155.012656 2.190367158 0.009562 122 13 3869 RNaseP RNaseP yes 569 311 325 41.84752 278.630742 160.239131 2.204768581 0.304157 122 14 12564 MT_15S 15S yes 1848 211 229 32.198434 362.907848 197.553141 2.295683939 -0.458144 122 15 5114 snR11 snR11 yes 458 171 193 28.375294 291.506053 159.9406735 2.20395892 -0.093826 122 16 10097 RUF6 RUF6 yes 1251 331 347 34.166391 260.862776 147.5145835 2.168834957 0.331641 122 17 15619 YBR181C intron no 452 161 178 30.268111 294.387197 162.327654 2.210392512 -0.017463 122 18 12255 5S rRNA NTS2 no 1420 231 247 32.094809 279.576895 155.835852 2.19266738 0.138766 122 19 2548 Pro2 ProTGG_i 5_flank no 303 28.155619 279.868247 154.011933 2.187554372 -0.051649 122 20 10706 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 416 433 45.300793 318.242724 181.7717585 2.259526409 -0.052877 122 21 3236 Thr1 ThrAGT tRNA yes 273 36 52 47.255686 307.791528 177.523607 2.249256113 0.045646 122 22 1590 Leu4 LeuCAA_iv 3_flank no 314 32.088523 288.49465 160.2915865 2.204910727 0.08075 122 23 19158 YPL075W intron no 851 681 697 40.17275 319.500276 179.836513 2.254877873 -0.08133 122 24 1628 Leu5 LeuCAA_v tRNA yes 315 6 19 40588.78064 22510.76378 31549.77221 4.498996228 -0.035698 122 25 10485 RUF8 RUF8 yes 1151 351 370 43.402951 317.87837 180.6406605 2.256815513 -0.056356 122 26 990 Gly2 GlyCCC_ii 5_flank no 272 29.895519 309.768477 169.831998 2.230019519 -0.124167 122 27 12530 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 346 372 28.298216 299.187345 163.7427805 2.214162161 -0.132687 122 28 6998 snR60 snR60 yes 304 71 88 30.724286 287.591888 159.158087 2.201828711 0.041154 122 29 7904 snoRNA cluster1 intergenic no 1574 1316 1338 28.862883 292.559937 160.71141 2.206046711 -0.072159 122 30 14511 MT_21S 21S_rRNA3 yes 4639 1876 1898 31.056679 314.469942 172.7633105 2.237451517 -0.11211 122 31 4080 SRP SRP yes 875 291 303 73.584604 312.687456 193.13603 2.2858633 0.150322 122 32 4639 snR3 snR3 yes 395 111 127 65.721521 369.003386 217.3624535 2.337184528 -0.30352 122 33 15381 YBL027W intron no 484 381 398 34.857808 283.681651 159.2697295 2.202133242 0.197478 122 34 8486 snR19 / U1 RNA 5_flank no 868 30.470854 341.238497 185.8546755 2.269173491 -0.314742 122 35 11866 "rRNA(18S,5.8S,25S)" 25S yes 7956 6216 6233 119.405856 395.509778 257.457817 2.410706083 -0.09563 122 36 1967 Lys2 LysCTT_ii tRNA yes 273 36 53 9033.174703 6688.915151 7861.044927 3.895480278 0.146113 122 37 18035 YLR316C 3_exon no 168 141 156 34.155762 282.905929 158.5308455 2.200113776 0.181961 122 38 6809 snR52 5_flank no 292 38.275199 265.631305 151.953252 2.181709999 0.398677 122 39 11513 "rRNA(18S,5.8S,25S)" 25S yes 7956 4451 4464 310.523829 808.166274 559.3450515 2.7476798 -0.568777 122 40 16718 YGL031C intron/exon no 556 501 520 36.413082 310.390411 173.4017465 2.239053467 -0.010147 122 41 5431 snR31 snR31/3_flank no 425 32.355521 275.235988 153.7957545 2.186944347 0.176026 122 42 16498 YER117W intron no 571 141 160 30.298447 327.595918 178.9471825 2.252724865 -0.216259 122 43 21889 copy of SH18799 no 532 28.192486 287.970044 158.081265 2.198880403 -0.087617 122 44 15516 YBR048W intron no 611 281 300 32.19968 313.603982 172.901831 2.237799592 -0.083186 122 45 5423 snR31 snR31 yes 425 181 198 38.220546 314.708789 176.4646675 2.246657762 -0.044329 122 46 19869 Negative Control no 60 NA #VALUE! 36.043619 299.051418 167.5475185 2.224138 0.080935 122 47 11304 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3406 3423 304.277772 450.072418 377.175095 2.576543008 0.464041 122 48 8785 LSR1 / U2 RNA U2 yes 1375 566 585 35.807467 294.293976 165.0507215 2.217617427 0.117845 122 49 11904 "rRNA(18S,5.8S,25S)" 25S yes 7956 6406 6424 88.181524 364.585164 226.383344 2.354844471 -0.118156 122 50 3848 RNaseP RNaseP yes 569 206 222 31.498991 305.708707 168.603849 2.226867485 -0.04532 122 51 2120 Met1 MetCAT_i 5_flank/tRNA no 273 31.343337 307.41938 169.3813585 2.228865612 -0.060767 122 52 9703 RUF4 RUF4 yes 988 291 308 29.216817 309.435902 169.3263595 2.228724571 -0.146169 122 53 10771 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 741 758 64.981827 368.160031 216.570929 2.335600159 -0.303538 122 54 19589 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 81 100 29.114224 345.230559 187.1723915 2.272241789 -0.362343 122 55 8516 snR19 / U1 RNA U1 yes 868 76 98 31.160672 268.271334 149.716003 2.175268224 0.162273 122 56 3899 RNase MRP 5_flank no 540 29.316556 316.820523 173.0685395 2.238218129 -0.186033 122 57 5787 snR35 snR35 yes 740 121 140 29.496254 318.111473 173.8038635 2.240059426 -0.187139 122 58 12301 5S rRNA NTS2 no 1420 461 477 35.739102 325.188839 180.4639705 2.256390508 -0.141988 122 59 4220 telomerase RNA telomerase yes 1501 136 152 33.910623 292.392557 163.15159 2.212591311 0.111327 122 60 2097 Lys4 LysTTT_ii 3_flank no 296 36.093242 293.454323 164.7737825 2.216888111 0.128197 122 61 21426 Trp1 spliced yes 40 25 37 170.767783 513.443639 342.105711 2.534160324 -0.335211 122 62 4439 telomerase RNA telomerase yes 1501 1231 1250 30.055469 304.687527 167.371498 2.223681503 -0.088145 122 63 2457 Phe5 PheGAA_v tRNA yes 291 38 52 216.59236 429.513501 323.0529305 2.509273685 0.233273 122 64 2659 Pro4 ProTGG_iii 5_flank no 302 29.86743 293.248691 161.5580605 2.208328631 -0.024245 122 65 688 Gln3 GlnTTG_ii 5_flank no 272 29.676348 324.136619 176.9064835 2.24774375 -0.215329 122 66 18886 YOL047C intron no 163 81 98 32.436659 281.051186 156.7439225 2.195190711 0.140146 122 67 19794 Negative Control no 60 NA #VALUE! 35.130114 287.954128 161.542121 2.208285781 0.163758 122 68 8841 LSR1 / U2 RNA U2 yes 1375 846 861 2434.503333 2861.72858 2648.115957 3.422936998 -0.054081 122 69 5343 snR30 snR30 yes 801 566 582 32.649462 296.321323 164.4853925 2.216127335 0.049562 122 70 1214 Ile1 IleAAT tRNA yes 274 30 44 34.465814 301.475766 167.97079 2.225233765 0.042447 122 71 4485 U3b (snR17b) 5_flank/U3b no 662 28.604554 319.227962 173.916258 2.240340183 -0.225644 122 72 8772 LSR1 / U2 RNA U2 yes 1375 501 518 32.571153 283.450207 158.01068 2.198686442 0.128817 122 73 627 Gln2 GlnTTG_i 5_flank no 272 28.820789 279.985751 154.40327 2.188656494 -0.015928 122 74 15137 MT_Phe 3_flank no 265 241 265 29.01121 343.394177 186.2026935 2.269985959 -0.35063 122 75 10599 RUF8 RUF8 yes 1151 921 935 69.186242 330.548272 199.867257 2.300741652 -0.012508 122 76 1990 Lys2 LysCTT_ii 3_flank no 273 113.892141 468.351538 291.1218395 2.464074787 -0.491161 122 77 18009 YLR287C intron no 530 361 378 35.447936 291.26852 163.358228 2.213141014 0.139204 122 78 15047 MT_COX 2; ORF1 ORF1exon1 yes 2427 1306 1327 29.456992 285.487179 157.4720855 2.197203579 -0.007913 122 79 13018 MT_COX1 ai2 no 13084 4471 4487 51.497143 305.369776 178.4334595 2.251476296 0.087609 122 80 20796 YKL157W spliced yes 40 1 20 33.363391 315.547082 174.4552365 2.24168401 -0.083751 122 81 15771 YCR097W intron/exon no 154 101 120 33.344409 320.88953 177.1169695 2.248260173 -0.125478 122 82 6632 snR48 5_flank/snR48 no 313 39.40372 298.436715 168.9202175 2.227681632 0.106792 122 83 11942 "rRNA(18S,5.8S,25S)" 25S yes 7956 6596 6614 45.613983 316.110372 180.8621775 2.257347755 -0.033438 122 84 19087 YOR293W 3_exon no 537 501 516 122.161854 373.687495 247.9246745 2.394319752 0.043188 122 85 16651 YFR031C intron no 247 141 159 31.959956 289.294204 160.62708 2.205818764 0.071462 122 86 17490 YJL024C 3_exon no 177 161 173 38.369172 270.372287 154.3707295 2.188564956 0.355973 122 87 13372 MT_COX1 intronic no 13084 9781 9802 28.309719 290.646093 159.477906 2.202700525 -0.093487 122 88 19423 YPR132W intron no 465 181 193 94.903899 327.679553 211.291726 2.324882491 0.169991 122 89 8713 LSR1 / U2 RNA U2 yes 1375 206 222 30.636239 293.506712 162.0714755 2.209706586 0.000675 122 90 4016 SRP 5_flank no 875 30.666173 283.02442 156.8452965 2.1954715 0.06613 122 91 21064 YMR201C spliced yes 40 9 24 46.25451 322.159616 184.207063 2.265306278 -0.080052 122 92 15543 YBR078W intron no 430 221 238 34.623774 294.006145 164.3149595 2.215677104 0.106344 122 93 10500 RUF8 RUF8 yes 1151 426 445 35.425908 321.165655 178.2957815 2.251141068 -0.108008 122 94 11756 "rRNA(18S,5.8S,25S)" 25S yes 7956 5666 5681 772.42234 1712.614822 1242.518581 3.094302892 -0.727899 122 95 5726 snR34 3_flank no 750 33.881099 281.27255 157.5768245 2.197492344 0.184191 122 96 9807 RUF4 3_flank no 988 49.911943 300.337919 175.124931 2.243347977 0.12379 122 97 4622 snR3 snR3 yes 395 26 42 278.372946 371.345512 324.859229 2.511695209 0.749482 122 98 10655 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 161 178 51.964283 349.839254 200.9017685 2.30298376 -0.263274 122 99 21419 Ser4 spliced yes 40 21 37 44.060552 288.729421 166.3949865 2.221140237 0.209602 122 100 3947 RNase MRP RNaseMRP yes 540 151 167 38.208351 327.580134 182.8942425 2.262200034 -0.156359 122 101 5346 snR30 snR30 yes 801 581 598 32.299958 300.900531 166.6002445 2.221675634 0.010089 122 102 7338 snR68 5_flank no 336 32.514014 283.878657 158.1963355 2.199196419 0.124203 122 103 14493 MT_21S 21S_rRNA3 yes 4639 1606 1630 30.606409 363.734889 197.170649 2.294842266 -0.470682 122 104 9496 RUF2 3_flank no 468 34.970416 308.587671 171.7790435 2.23497018 -0.009157 123 2 21645 copy of SH8560 no 868 31.01375 293.973452 162.493601 2.210836263 0.010538 123 3 8590 snR19 / U1 RNA U1 yes 868 446 464 33.034751 284.877683 158.956217 2.201277518 0.134326 123 4 8041 snoRNA cluster 2 intergenic no 739 441 460 29.079519 281.591703 155.335611 2.19127103 -0.009657 123 5 6794 snR50 3_flank no 290 37.046927 307.156506 172.1017165 2.235785202 0.020692 123 6 2801 Pro6 ProTGG_v tRNA/3_flank no 302 41.021933 271.341451 156.181692 2.193630123 0.374811 123 7 6205 snR40 snR40/3_flank no 297 31.0629 279.608553 155.3357265 2.191271353 0.102272 123 8 14698 MT_Thr2 5_flank no 276 46 74 29.027659 311.326703 170.177181 2.230901325 -0.164167 123 9 14644 MT_21S intronic no 4639 3871 3894 30.898151 334.389278 182.6437145 2.261604731 -0.258867 123 10 2149 Met1 MetCAT_i 3_flank no 273 30.776305 355.841346 193.3088255 2.286251682 -0.414169 123 11 10742 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 596 614 32.610804 266.876932 149.743868 2.175349047 0.239888 123 12 8114 snoRNA cluster 3; 5_flank no 743 81 100 34.468164 338.823966 186.646065 2.271018838 -0.26006 123 13 18388 YMR116C intron no 373 261 283 38.316621 346.996735 192.656678 2.284784067 -0.314519 123 14 11929 "rRNA(18S,5.8S,25S)" 25S yes 7956 6531 6544 34.415798 316.149284 175.282541 2.24373866 -0.075604 123 15 6677 snR49 5_flank no 365 28.586471 329.387455 178.986963 2.252821399 -0.283987 123 16 11155 "rRNA(18S,5.8S,25S)" 18S yes 7956 2661 2676 38.251424 314.862368 176.556896 2.246884685 -0.045619 123 17 18774 YNL265C 5_exon no 205 21 37 43.950159 339.861265 191.905712 2.283087902 -0.233806 123 18 5029 snR10 snR10 yes 445 176 193 34.086602 305.738678 169.91264 2.230225688 0.003166 123 19 9668 RUF4 RUF4 yes 988 116 133 32.003627 274.111452 153.0575395 2.184854727 0.172144 123 20 6728 snR49 3_flank no 365 43.394914 313.658818 178.526866 2.251703581 -0.019728 123 21 17287 YHR141C intron no 541 261 277 45.357686 309.446656 177.402171 2.24895893 0.023658 123 22 15561 YBR082C 3_exon no 195 161 175 57.244421 331.375951 194.310186 2.288495567 -0.092319 123 23 3894 RNaseP 3_flank no 569 28.58773 274.127324 151.357527 2.180004023 -0.000385 123 24 16664 YFR032C intron no 431 161 178 68.647283 398.703494 233.6753885 2.368612973 -0.466664 123 25 18202 YML024W intron no 498 341 356 88.689941 324.077446 206.3836935 2.31467538 0.157726 123 26 10481 RUF8 RUF8 yes 1151 331 347 66.817904 369.941322 218.379613 2.339212092 -0.301559 123 27 3982 RNase MRP RNaseMRP yes 540 326 340 44.89389 284.68833 164.79111 2.216933779 0.250932 123 28 21590 copy of SH6251 no 551 45.423212 339.640867 192.5320395 2.284503011 -0.223997 123 29 7288 snR66 5_flank no 286 33.102081 282.471357 157.786719 2.198070446 0.152071 123 30 19890 Positive Control 6 no 22 NA #VALUE! 72.729811 306.319916 189.5248635 2.277666193 0.196163 123 31 15193 MT_COX3 cox3 no 1010 316 333 33.187419 317.285629 175.236524 2.24362463 -0.099519 123 32 12170 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7736 7759 39.377562 301.172883 170.2752225 2.231151456 0.081231 123 33 8678 LSR1 / U2 RNA U2 yes 1375 31 49 31.814461 296.055166 163.9348135 2.214671191 0.024164 123 34 4254 telomerase RNA telomerase yes 1501 306 323 31.592648 308.838676 170.215662 2.230999518 -0.060974 123 35 152 Arg1 ArgACG_i 3_flank no 273 34.477545 286.640176 160.5588605 2.205634277 0.167296 123 36 19857 Negative Control no 60 NA #VALUE! 38.419098 280.457902 159.4385 2.2025932 0.266002 123 37 11121 "rRNA(18S,5.8S,25S)" 18S yes 7956 2491 2507 38.3286 302.157791 170.2431955 2.231069762 0.069643 123 38 19585 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 1 16 86.660527 400.757909 243.709218 2.386871956 -0.344409 123 39 15597 YBR089C intron no 214 101 113 36.385799 239.614657 138.000228 2.139879804 0.55357 123 40 19795 Negative Control no 60 NA #VALUE! 34.437206 247.512739 140.9749725 2.149142019 0.424864 123 41 16367 YEL012W 3_exon no 223 181 197 110.69997 372.970108 241.835039 2.383519225 -0.02254 123 42 9098 snR14 / U4 RNA U4 yes 360 106 120 36.596265 323.390494 179.9933795 2.255256531 -0.124329 123 43 21030 YMR116C spliced yes 40 17 34 30.342969 292.245989 161.294479 2.207619502 -0.001444 123 44 8982 snR17a / U3a U3a yes 690 196 212 36.407088 266.085528 151.246308 2.179684782 0.361473 123 45 6131 snR39B 5_flank/snR39B no 296 32.147248 279.916888 156.032068 2.193213865 0.138233 123 46 17502 YJL136C 5_exon no 560 1 22 34.027699 372.837848 203.4327735 2.30842092 -0.528449 123 47 7873 snoRNA cluster1 snR73 yes 1574 1161 1177 29.803107 253.886621 141.844864 2.151813615 0.162616 123 48 9021 snR17a / U3a U3a yes 690 391 409 29.645956 281.934431 155.7901935 2.192540117 0.018698 123 49 1399 Leu1 LeuCAA_i intron/tRNA no 315 i28 e1 263.198527 414.546745 338.872636 2.530036501 0.482356 123 50 13249 MT_COX1 ai4 no 13084 7936 7955 27.293601 279.014405 153.154003 2.185128352 -0.09834 123 51 17231 YHR077C intron no 213 101 120 33.03519 293.806936 163.421063 2.213308031 0.077516 123 52 5247 snR30 snR30 yes 801 86 103 30.871059 279.94137 155.4062145 2.191468382 0.091062 123 53 11354 "rRNA(18S,5.8S,25S)" 25S yes 7956 3656 3669 68.201727 313.283419 190.742573 2.280447637 0.113779 123 54 7722 snoRNA cluster1 snR77/intergenic no 1574 406 421 60.225685 314.878408 187.5520465 2.273121807 0.054923 123 55 3562 Tyr2 TyrGTA_ii tRNA/3_flank no 289 32.771765 299.924008 166.3478865 2.221017287 0.031217 123 56 20294 YDR500C spliced yes 40 17 31 34.938468 266.411366 150.674917 2.178040961 0.316224 123 57 9315 RUF1 RUF1 yes 750 151 167 39.202868 297.54339 168.373129 2.226272783 0.114702 123 58 15244 MT_fMet 5_flank/tRNA no 274 91 112 29.505208 300.583582 165.044395 2.21760078 -0.082472 123 59 16077 YDR025W intron no 439 81 102 29.743573 303.468788 166.6061805 2.221691108 -0.091658 123 60 10901 "rRNA(18S,5.8S,25S)" 18S yes 7956 1391 1410 17086.86017 18451.7631 17769.31163 4.249670604 -0.765024 123 61 12387 5S rRNA NTS2 no 1420 891 907 40.303665 290.500338 165.4020015 2.218540761 0.184163 123 62 18743 YNL162W intron no 612 181 198 36.273257 313.387719 174.830488 2.24261717 -0.03735 123 63 628 Gln2 GlnTTG_i 5_flank no 272 30.106084 281.844203 155.9751435 2.193055394 0.043054 123 64 20756 YJR094W-A spliced yes 40 5 24 49.427983 318.490019 183.959001 2.264721042 -0.033513 123 65 20816 YKL190W spliced yes 40 9 29 29.823245 306.652177 168.237711 2.225923351 -0.108078 123 66 18039 YLR333C intron no 523 61 77 35.622903 312.428289 174.025596 2.24061313 -0.03207 123 67 17120 YHR010W intron no 661 121 138 35.314705 298.495359 166.905032 2.22246943 0.077075 123 68 17705 YKL081W intron no 426 101 118 33.04044 303.154894 168.097667 2.225561686 0.011233 123 69 17082 YHL001W 5_exon no 498 21 38 28.886763 274.884435 151.885599 2.181516598 0.012111 123 70 7012 snR60 3_flank no 304 693.586881 907.784411 800.685646 2.903462043 0.179431 123 71 13617 MT_ATP6 5_flank no 980 61 85 30.655882 310.424426 170.540154 2.231826651 -0.101835 123 72 10047 RUF6 RUF6 yes 1251 81 100 31.673891 292.480596 162.0772435 2.209722042 0.041905 123 73 19032 YOR234C 5_exon no 627 21 38 32.780369 305.773246 169.2768075 2.22859746 -0.013292 123 74 1293 Ile2 IleTAT_i 3_flank no 333 30.995895 282.68954 156.8427175 2.195464358 0.082 123 75 16705 YGL031C intron no 556 241 261 29.211037 281.614288 155.4126625 2.191486401 -0.002753 123 76 3846 RNaseP RNaseP yes 569 196 213 29.382162 266.828544 148.105353 2.170570756 0.07814 123 77 14011 MT_COB intronic no 7308 4351 4372 29.511666 301.632273 165.5719695 2.218986815 -0.088656 123 78 12883 MT_COX1 ai1 no 13084 2446 2465 29.589606 290.415527 160.0025665 2.204126949 -0.023725 123 79 6 Ala1 AlaAGC 5_flank no 273 29.625911 298.047006 163.8364585 2.214410552 -0.062605 123 80 3973 RNase MRP RNaseMRP yes 540 281 293 63.081169 296.008032 179.5446005 2.254172349 0.227716 123 81 16600 YFL034C intron/exon no 421 361 377 45.849257 285.063138 165.4561975 2.218683039 0.250322 123 82 6726 snR49 snR49/3_flank no 365 29.735716 283.664314 156.700015 2.195069038 0.015249 123 83 16040 YDL191W intron no 591 261 282 27.816258 329.772568 178.794413 2.252353944 -0.314659 123 84 5475 snR32 snR32 yes 388 36 56 32.022591 305.743567 168.883079 2.227586138 -0.028315 123 85 9041 snR17a / U3a 3_flank no 690 30.158821 266.402358 148.2805895 2.171084304 0.120806 123 86 14524 MT_21S 21S_rRNA3 yes 4639 2071 2090 30.342961 293.161358 161.7521595 2.208850088 -0.007202 123 87 12357 5S rRNA NTS2 no 1420 741 758 34.67097 284.015027 159.3429985 2.202332985 0.190391 123 88 13089 MT_COX1 ai3 no 13084 5536 5557 30.68237 317.20089 173.94163 2.240403536 -0.140693 123 89 3565 Tyr2 TyrGTA_ii 3_flank no 289 51.818393 325.705193 188.761793 2.275914094 -0.079069 123 90 21659 copy of SH9189 no 415 32.968269 287.096781 160.032525 2.204208258 0.117936 123 91 8700 LSR1 / U2 RNA U2 yes 1375 141 158 31.901748 304.006712 167.95423 2.225190946 -0.021774 123 92 15041 MT_COX 2; ORF1 ORF1exon1 yes 2427 1216 1240 28.652293 304.828401 166.740347 2.222040701 -0.138921 123 93 15165 MT_Val tRNA yes 276 151 167 28.45192 305.637632 167.044776 2.222832898 -0.152674 123 94 21696 copy of SH10661 no 7956 77.834724 372.440626 225.137675 2.352448177 -0.239006 123 95 6557 snR46 3_flank no 397 36.062267 310.919434 173.4908505 2.239276576 -0.015789 123 96 8557 snR19 / U1 RNA U1 yes 868 281 298 33.763327 290.730086 162.2467065 2.21017589 0.119665 123 97 11085 "rRNA(18S,5.8S,25S)" 18S yes 7956 2311 2329 497.900752 865.983303 681.9420275 2.833747456 -0.138512 123 98 2035 Lys3 LysTTT_i 3_flank no 296 27.602651 270.464831 149.033741 2.173284603 -0.043695 123 99 6934 snR58 snR58 yes 296 31 47 29.73067 286.524336 158.127503 2.199007413 0.001627 123 100 12608 MT_15S 15S yes 1848 871 892 31.962085 357.750128 194.8561065 2.28971402 -0.418822 123 101 5833 snR35 snR35 yes 740 351 368 30.162637 276.018922 153.0907795 2.184949034 0.073781 123 102 5578 snR33 snR33/3_flank no 383 32.469021 298.920104 165.6945625 2.219308257 0.027698 123 103 17623 YJR094W intron no 375 61 78 35.84846 381.516338 208.682399 2.319485821 -0.584141 123 104 5874 snR35 3_flank no 740 30.787312 298.386077 164.5866945 2.216394723 -0.024545 124 2 10354 RUF7 RUF7 yes 700 381 395 95.51203 335.46101 215.48652 2.333420108 0.120042 124 3 11015 "rRNA(18S,5.8S,25S)" 18S yes 7956 1961 1974 53.132621 322.413505 187.773063 2.273633291 -0.045342 124 4 18410 YMR125W intron no 422 341 358 31.025124 305.795065 168.4100945 2.22636812 -0.061668 124 5 19625 RNA14 2.2 RNA14 2.2 yes 401 1 17 48.913981 309.514238 179.2141095 2.253372199 0.039383 124 6 9656 RUF4 RUF4 yes 988 56 68 109.717869 320.463202 215.0905355 2.332621301 0.308677 124 7 15830 YDL075W exon/intron no 521 41 57 34.907058 311.270069 173.0885635 2.238268374 -0.031297 124 8 17263 YHR101C 3_exon no 187 141 158 30.909095 329.11715 180.0131225 2.255304165 -0.219446 124 9 16193 YDR381C exon/intron no 294 41 60 32.802045 343.55444 188.1782425 2.274569408 -0.303323 124 10 556 Cys1 CysGCA 3_flank no 272 30.759681 306.347403 168.553542 2.226737883 -0.073963 124 11 8541 snR19 / U1 RNA U1 yes 868 201 219 32.641947 304.077989 168.359968 2.226238835 -0.001305 124 12 4418 telomerase RNA telomerase yes 1501 1126 1142 37.47708 267.546679 152.5118795 2.183303673 0.372196 124 13 19397 YPR063C 5_exon no 186 21 35 30.633191 286.394646 158.5139185 2.200067402 0.045735 124 14 3396 Thr4 ThrTGT_ii tRNA/3_flank no 272 44.314976 344.118145 194.2165605 2.288286259 -0.264635 124 15 21123 YNL112W spliced yes 40 17 34 30.623429 379.51163 205.0675295 2.311896899 -0.587721 124 16 20998 YML085C spliced yes 40 9 26 30.559956 276.085258 153.322607 2.185606195 0.093795 124 17 17221 YHR041C intron no 201 101 117 34.305735 280.247683 157.276709 2.196664413 0.203918 124 18 19040 YOR234C intron no 627 181 203 28.34036 337.219788 182.780074 2.261928849 -0.336284 124 19 8755 LSR1 / U2 RNA U2 yes 1375 416 433 28.194557 298.342144 163.2683505 2.212902005 -0.134622 124 20 7035 snR62 5_flank no 300 53.058159 336.667662 194.8629105 2.289729185 -0.157747 124 21 2865 Pro7 ProTGG_vi 3_flank no 303 39.674548 287.859105 163.7668265 2.214225933 0.208247 124 22 13512 MT_COX1 intronic no 13084 11881 11907 28.374628 309.522366 168.948497 2.227754333 -0.177225 124 23 52 Ala1 AlaAGC 3_flank no 273 30.649158 281.067388 155.858273 2.19272986 0.074508 124 24 6263 snR42 snR42 yes 551 96 112 32.0872 318.974052 175.530626 2.244352902 -0.126595 124 25 15859 YDL079C intron no 392 101 118 31.594817 278.179862 154.8873395 2.19001592 0.131594 124 26 1123 Gly4 GlyTCC 3_flank no 272 30.045025 311.561202 170.8031135 2.232495783 -0.129582 124 27 16659 YFR032C intron no 431 61 77 36.657523 295.351463 166.004493 2.220119843 0.118695 124 28 6177 snR40 5_flank no 297 32.855765 307.597038 170.2264015 2.231026918 -0.027038 124 29 16452 YER074W exon/intron no 202 41 60 30.971663 315.305142 173.1384025 2.238393406 -0.119856 124 30 20509 YGR027C spliced yes 40 21 40 35.27653 300.679888 167.978209 2.225252946 0.058607 124 31 16863 YGL187C intron no 442 121 137 40.531517 304.809463 172.67049 2.237218121 0.050333 124 32 2572 Pro2 ProTGG_i tRNA/3_flank no 303 47.77283 291.138919 169.4558745 2.229056629 0.198327 124 33 7096 snR63 5_flank/snR63 no 455 30.744746 297.750518 164.247632 2.215499117 -0.022064 124 34 17524 YJL136C intron no 560 441 460 30.542714 317.141882 173.842298 2.240155454 -0.145114 124 35 7549 snR79 3_flank no 284 30.349606 296.87088 163.610243 2.21381049 -0.030124 124 36 12313 5S rRNA NTS2 no 1420 521 537 44.606527 321.676859 183.141693 2.262787225 -0.085004 124 37 2340 Phe3 PheGAA_iii tRNA/intron no 291 26 i5 46.567474 330.136786 188.35213 2.274970536 -0.142965 124 38 929 Glu3 GluTTC_ii 3_flank no 272 52.7889 297.687015 175.2379575 2.243628183 0.160957 124 39 19016 YOR182C intron no 511 201 218 36.400376 314.523045 175.4617105 2.244182359 -0.047135 124 40 17595 YJL191W intron no 508 421 440 30.333789 250.479076 140.4064325 2.147387005 0.208927 124 41 5174 snR13 snR13 yes 324 26 43 36.606644 342.405405 189.5060245 2.277623021 -0.283943 124 42 12866 MT_COX1 ai1 no 13084 2191 2215 30.416522 343.052815 186.7346685 2.271224955 -0.328586 124 43 10600 RUF8 RUF8 yes 1151 926 940 57.307044 344.723025 201.0150345 2.303228541 -0.191773 124 44 13158 MT_COX1 intronic no 13084 6571 6583 15127.72516 24472.42072 19800.07294 4.29666679 -1.383331 124 45 19853 Negative Control no 60 NA #VALUE! 36.207611 304.346854 170.2772325 2.231156583 0.039437 124 46 9693 RUF4 RUF4 yes 988 241 262 31.917809 303.526599 167.722204 2.224590561 -0.018338 124 47 1992 Lys3 LysTTT_i 5_flank no 296 35.751362 315.013253 175.3823075 2.24398578 -0.053129 124 48 12069 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7231 7249 31.488655 303.872597 167.680626 2.224482887 -0.034571 124 49 9959 RUF5-1 RUF5-1 yes 975 601 618 43.227043 358.895923 201.061483 2.303328882 -0.381736 124 50 11753 "rRNA(18S,5.8S,25S)" 25S yes 7956 5651 5669 3852.858599 13590.36524 8721.61192 3.940596758 -2.073808 124 51 6269 snR42 snR42 yes 551 126 146 32.700306 291.958631 162.3294685 2.210397367 0.078496 124 52 1101 Gly4 GlyTCC 5_flank no 272 33.440081 304.958535 169.199308 2.228398583 0.001551 124 53 1954 Lys2 LysCTT_ii 5_flank no 273 30.384992 325.174774 177.779883 2.249882616 -0.196746 124 54 16529 YER131W intron no 461 201 218 30.357465 336.217552 183.2875085 2.263132868 -0.279652 124 55 8995 snR17a / U3a U3a yes 690 261 273 47.960891 322.500689 185.23079 2.267713179 -0.073948 124 56 13138 MT_COX1 ai3/intronic no 13084 6271 6297 28.720236 306.807719 167.7639775 2.224698714 -0.148364 124 57 5301 snR30 snR30 yes 801 356 370 77.598296 324.539867 201.0690815 2.303345294 0.085311 124 58 18313 YML073C intron/exon no 515 461 477 39.285678 312.212088 175.748883 2.244892573 -0.019564 124 59 21384 Lys3_4 spliced yes 40 25 40 312.977078 487.147333 400.0622055 2.602127525 0.344469 124 60 10838 "rRNA(18S,5.8S,25S)" 18S yes 7956 1076 1091 127.882667 372.131479 250.007073 2.397952296 0.085799 124 61 17422 YIL111W intron no 188 101 118 32.118753 282.73064 157.4246965 2.197072865 0.118892 124 62 21832 copy of SH16332 no 484 28.137883 302.885179 165.511531 2.218828256 -0.157873 124 63 21144 YNL162W spliced yes 40 25 39 70.664076 317.077972 193.871024 2.287512904 0.098957 124 64 16680 YGL030W intron no 330 61 81 30.122515 304.263988 167.1932515 2.223218744 -0.083257 124 65 16108 YDR064W intron no 639 81 98 29.960079 324.759454 177.3597665 2.248855108 -0.208927 124 66 3599 Val1 ValAAC_i 5_flank/tRNA no 274 31.752145 296.655599 164.203872 2.215383394 0.018386 124 67 18732 YNL147W 3_exon no 220 181 197 33.476976 290.140039 161.8085075 2.209001352 0.114512 124 68 13162 MT_COX1 intronic no 13084 6631 6648 61.147488 355.156953 208.1522205 2.318381048 -0.241376 124 69 19051 YOR234C intron no 627 401 420 30.949407 310.240452 170.5949295 2.231966119 -0.090793 124 70 17951 YLR185W 5_exon no 459 1 18 37.626091 325.304082 181.4650865 2.25879308 -0.13828 124 71 6098 snR37 3_flank no 586 32.613164 299.457139 166.0351515 2.220200043 0.029019 124 72 11039 "rRNA(18S,5.8S,25S)" 18S yes 7956 2081 2096 55221.60568 18553.4859 36887.54579 4.566879762 0.66257 124 73 19495 YPT1 YPT1 yes 402 201 217 42.493757 342.951139 192.722448 2.284932304 -0.265974 124 74 13577 MT_COX1 exon6 yes 13084 12856 12873 34.821096 322.840688 178.830892 2.252442543 -0.124115 124 75 3936 RNase MRP RNaseMRP yes 540 96 112 35.055462 308.348017 171.7017395 2.234774695 -0.006231 124 76 21377 Leu8_9 spliced yes 40 21 37 31.321527 259.52324 145.4223835 2.162631259 0.214419 124 77 4142 SRP SRP yes 875 601 615 57.756819 314.283554 186.0201865 2.269560075 0.045534 124 78 12734 MT_COX1 exon1 yes 13084 211 228 35.746403 303.845415 169.795909 2.229927222 0.038204 124 79 16758 YGL087C 5_exon no 185 21 37 33.867551 312.095079 172.981315 2.237999194 -0.050356 124 80 2976 Ser1 SerAGA_i 3_flank no 283 29.907724 321.437613 175.6726685 2.244704198 -0.191824 124 81 17699 YKL006W 3_exon no 498 481 496 78.172533 334.900516 206.5365245 2.314996865 0.013515 124 82 9936 RUF5-1 RUF5-1 yes 975 486 503 32.085548 281.822221 156.9538845 2.195772069 0.123737 124 83 7333 snR66 3_flank no 286 32.164203 292.564224 162.3642135 2.210490313 0.05742 124 84 13440 MT_COX1 intronic no 13084 10801 10823 32.257944 300.222714 166.240329 2.22073639 0.012882 124 85 4921 snR9 snR9 yes 387 11 32 30.311722 306.658704 168.485213 2.226561791 -0.091152 124 86 16839 YGL178W intron no 740 561 578 34.574188 311.233171 172.9036795 2.237804235 -0.034971 124 87 17720 YKL081W 3_exon no 426 401 417 30.580482 328.288484 179.434483 2.253905908 -0.217642 124 88 16018 YDL189W 5_exon no 199 21 36 51.701991 307.487916 179.5949535 2.254294129 0.070336 124 89 19122 YPL031C 3_exon no 202 161 177 32.97525 300.469481 166.7223655 2.221993864 0.032404 124 90 11193 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2851 2868 33.080352 288.604668 160.84251 2.206400842 0.111835 124 91 13434 MT_COX1 intronic no 13084 10711 10730 30.987987 275.765314 153.3766505 2.185759249 0.11695 124 92 16817 YGL178W intron no 740 121 140 37.17697 345.997478 191.587224 2.282366545 -0.310909 124 93 18967 YOR096W 5_exon no 501 21 38 30.646637 301.511057 166.078847 2.220314321 -0.048509 124 94 4300 telomerase RNA telomerase yes 1501 536 557 32.382375 277.644901 155.013638 2.190369909 0.160848 124 95 4783 snR5 snR5 yes 404 86 105 29.976703 299.708265 164.842484 2.21706915 -0.060548 124 96 10795 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 861 878 33.716331 284.922924 159.3196275 2.202269282 0.155359 124 97 19114 YPL031C 5_exon no 202 1 13 41.557044 391.671571 216.6143075 2.335687139 -0.621981 124 98 7483 snR71 snR71 yes 290 31 50 29.479682 268.305199 148.8924405 2.172872649 0.075939 124 99 7847 snoRNA cluster1 snR74 yes 1574 1031 1048 29.587931 320.89918 175.2435555 2.243642056 -0.199963 124 100 16623 YFL039C intron no 408 201 217 52.172467 365.640128 208.9062975 2.319951532 -0.374224 124 101 6462 snR45 snR45/3_flank no 372 32.106381 287.88711 159.9967455 2.204111149 0.085213 124 102 209 Arg3 ArgCCG 5_flank no 272 36.54961 333.369256 184.959433 2.267076485 -0.209358 124 103 5767 snR35 snR35 yes 740 21 33 34.786317 280.002926 157.3946215 2.196989888 0.220053 124 104 6374 snR43 snR43 yes 409 111 123 34.002215 285.612008 159.8071115 2.203596102 0.159729 125 2 16628 YFL039C intron no 408 301 318 29.027556 292.440335 160.7339455 2.206107605 -0.062775 125 3 2734 Pro5 ProTGG_iv tRNA-intron no 303 i15 i31 104.847327 398.460094 251.6537105 2.400803338 -0.205138 125 4 9932 RUF5-1 RUF5-1 yes 975 466 486 32.859193 280.326249 156.592721 2.194771571 0.158416 125 5 329 Arg5 ArgTCT 5_flank no 272 32.78012 304.145617 168.4628685 2.226504191 -0.000106 125 6 19882 Negative Control no 60 NA #VALUE! 30.748291 276.544145 153.646218 2.186521875 0.101129 125 7 6563 snR47 5_flank no 299 32.645498 263.560755 148.1031265 2.170564227 0.258191 125 8 10857 "rRNA(18S,5.8S,25S)" 18S yes 7956 1171 1184 158.370905 434.392105 296.381505 2.471851099 -0.066623 125 9 1058 Gly3 GlyGCC tRNA yes 271 27 41 31.554665 271.914826 151.7347455 2.181085041 0.163832 125 10 8737 LSR1 / U2 RNA U2 yes 1375 326 345 36.374738 324.569893 180.4723155 2.25641059 -0.135055 125 11 20935 YLR406C spliced yes 40 5 21 38.292111 307.821263 173.056687 2.238188385 0.01767 125 12 17094 YHL001W intron no 498 261 279 32.458981 306.869862 169.6644215 2.229590781 -0.026219 125 13 15008 MT_COX 2; ORF1 COX2 no 2427 721 740 36.381062 280.924783 158.6529225 2.200448077 0.239322 125 14 14274 MT_VAR1 VAR1 yes 1467 316 342 28.634217 398.177773 213.405995 2.329206615 -0.728006 125 15 3489 Tyr1 TyrGTA_i 5_flank/tRNA no 289 34.47315 329.257343 181.8652465 2.259749716 -0.180021 125 16 7241 snR65 5_flank no 300 30.522645 283.095083 156.808864 2.195370609 0.058509 125 17 12960 MT_COX1 ai2 no 13084 3601 3617 32.332056 294.717396 163.524726 2.21358343 0.049354 125 18 16057 YDL219W 5_exon no 171 21 37 30.237692 288.645531 159.4416115 2.202601675 0.017751 125 19 12041 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7091 7108 68.68261 391.361925 230.0222675 2.36176988 -0.422801 125 20 3509 Tyr1 TyrGTA_i tRNA/3_flank no 289 31.975003 284.955691 158.465347 2.199934306 0.099775 125 21 20205 YDR059C spliced yes 40 1 18 45.562386 357.956575 201.7594805 2.304833951 -0.361667 125 22 7150 snR63 3_flank no 455 31.389095 287.945911 159.667503 2.203216534 0.061243 125 23 1225 Ile1 IleAAT 3_flank no 274 26.893893 286.840024 156.8669585 2.195531476 -0.155651 125 24 19643 RNA14 2.2 RNA14 2.2 yes 401 361 378 29.280617 333.565948 181.4232825 2.25869302 -0.282143 125 25 2905 Pro8 ProTGG_vii tRNA yes 305 i10 i26 47.95605 325.365991 186.6610205 2.271053636 -0.097323 125 26 21325 YPR028W spliced yes 40 17 33 30.147684 303.036531 166.5921075 2.221654422 -0.074942 125 27 16142 YDR092W intron no 368 121 137 42.949324 277.603566 160.276445 2.204869701 0.31685 125 28 13797 MT_COB intronic no 7308 1141 1160 30.752647 316.575806 173.6642265 2.239710366 -0.134672 125 29 12622 MT_15S 15S yes 1848 1081 1097 176.566693 449.592795 313.079744 2.49565497 -0.041024 125 30 14583 MT_21S intronic no 4639 2956 2977 30.948387 300.343722 165.6460545 2.219181096 -0.031136 125 31 6419 snR45 5_flank no 372 31.950619 315.67977 173.8151945 2.240087739 -0.102705 125 32 8680 LSR1 / U2 RNA U2 yes 1375 41 58 32.873737 295.726509 164.300123 2.215637889 0.06041 125 33 890 Glu3 GluTTC_ii 5_flank no 272 28.541511 302.874612 165.7080615 2.219343637 -0.135696 125 34 17064 YGR214W intron no 555 421 438 30.432702 301.836636 166.134669 2.220460271 -0.057811 125 35 13436 MT_COX1 intronic no 13084 10741 10762 30.260064 292.664544 161.462304 2.208071145 -0.006936 125 36 11897 "rRNA(18S,5.8S,25S)" 25S yes 7956 6371 6388 17196.98508 23105.4739 20151.22949 4.304301549 -1.130935 125 37 15016 MT_COX 2; ORF1 cox2/ORF1exon1 no 2427 841 865 30.08294 320.469711 175.2763255 2.24372326 -0.180172 125 38 15990 YDL136W intron no 505 381 398 38.301858 300.742303 169.5220805 2.229226274 0.0827 125 39 9500 RUF2 3_flank no 468 32.247282 296.2931 164.270191 2.215558762 0.036795 125 40 11458 "rRNA(18S,5.8S,25S)" 25S yes 7956 4176 4192 364.566698 642.627275 503.5969865 2.702083123 0.01426 125 41 21874 copy of SH18249 no 226 32.429797 300.085155 166.257476 2.220781183 0.019274 125 42 13940 MT_COB bi3 no 7308 3286 3310 31.404464 309.587699 170.4960815 2.231714402 -0.071673 125 43 18454 YMR143W intron no 644 81 98 30.303679 341.754822 186.0292505 2.269581236 -0.320756 125 44 21672 copy of SH9622 no 631 37.345162 315.170443 176.2578025 2.246148351 -0.05054 125 45 14439 MT_21S 21S_rRNA3 yes 4639 796 813 32.014875 325.565867 178.790371 2.252344126 -0.178081 125 46 3076 Ser3 SerCGA tRNA yes 301 57 71 809.083544 779.529829 794.3066865 2.899988218 0.620995 125 47 1786 Leu8 LeuTAG_i 5_flank no 301 64.905073 318.307647 191.60636 2.282409921 0.054241 125 48 1614 Leu5 LeuCAA_v 5_flank no 315 31.276833 357.590187 194.43351 2.288771116 -0.419605 125 49 4078 SRP SRP yes 875 281 296 39.905719 327.484338 183.6950285 2.264097403 -0.149982 125 50 11704 "rRNA(18S,5.8S,25S)" 25S yes 7956 5406 5419 76.993119 313.020979 195.007049 2.29005031 0.168191 125 51 9721 RUF4 RUF4 yes 988 381 400 28.505351 309.505298 169.0053245 2.227900387 -0.172324 125 52 12346 5S rRNA NTS2 no 1420 686 702 43.70568 279.833043 161.7693615 2.208896271 0.296093 125 53 20729 YJL177W spliced yes 40 25 40 49.267241 314.460643 181.863942 2.2597466 -0.000703 125 54 8701 LSR1 / U2 RNA U2 yes 1375 146 163 27.170258 301.205723 164.1879905 2.215341388 -0.204841 125 55 3501 Tyr1 TyrGTA_i intron/tRNA no 289 i7 47 30.146597 312.173995 171.160296 2.233403029 -0.129676 125 56 18069 YLR344W intron no 547 141 161 28.458679 277.905783 153.182231 2.18520839 -0.025644 125 57 8370 snoRNA cluster 5 5_flank no 586 16 32 48.401701 290.257761 169.329731 2.228733218 0.208504 125 58 16009 YDL137W intron no 432 261 277 29.143899 313.670974 171.4074365 2.23402966 -0.173806 125 59 2923 Pro8 ProTGG_vii 3_flank no 305 31.510461 286.384196 158.9473285 2.201253233 0.075286 125 60 1724 Leu7 LeuTAA 5_flank no 284 29.824271 316.631452 173.2278615 2.238617744 -0.167004 125 61 18922 YOL121C intron no 490 101 119 32.108582 315.577125 173.8428535 2.240156842 -0.09986 125 62 18216 YML025C intron no 199 121 140 34.321944 297.664303 165.9931235 2.220090097 0.072159 125 63 13771 MT_COB intronic no 7308 751 779 28.212149 328.745674 178.4789115 2.251586909 -0.29416 125 64 13964 MT_COB bi3 no 7308 3646 3668 30.211258 302.951754 166.581506 2.221626784 -0.072227 125 65 8236 snoRNA cluster 3; 3_flank no 743 691 710 30.066404 287.926167 158.9962855 2.201386978 0.012576 125 66 826 Glu1 GluCTC 3_flank no 272 29.848553 276.827742 153.3381475 2.185650212 0.053621 125 67 5975 snR36 snR36 yes 555 331 351 42.669811 322.372169 182.52099 2.261312816 -0.097287 125 68 7345 snR68 5_flank no 336 33.280821 282.990115 158.135468 2.199029288 0.154316 125 69 4560 U3b (snR17b) U3b yes 662 356 375 29.031983 287.265972 158.1489775 2.199066388 -0.038766 125 70 20275 YDR447C spliced yes 40 17 34 111.77526 374.082865 242.9290625 2.385479474 -0.022392 125 71 16225 YDR381W intron no 866 401 413 56.028142 282.175478 169.10181 2.228148256 0.316848 125 72 17449 YIL148W intron no 534 81 97 34.402014 301.598519 168.0002665 2.225309971 0.040674 125 73 10197 RUF6 RUF6 yes 1251 831 848 30.548547 342.125833 186.33719 2.270299542 -0.320105 125 74 13348 MT_COX1 ai5a no 13084 9421 9443 32.637109 356.356347 194.496728 2.2889123 -0.406007 125 75 17051 YGR214W intron no 555 161 178 32.873185 328.022435 180.44781 2.256351616 -0.185703 125 76 14720 MT_Cys; His tRNACys yes 456 121 140 29.201156 330.787214 179.994185 2.255258475 -0.269579 125 77 10099 RUF6 RUF6 yes 1251 341 360 29.475401 279.843248 154.6593245 2.189376109 0.019647 125 78 6750 snR50 5_flank no 290 35.792196 284.080562 159.936379 2.203947259 0.204959 125 79 20632 YHR123W spliced yes 40 21 38 38.089828 303.916842 171.003335 2.23300458 0.052854 125 80 6947 snR58 snR58/3_flank no 296 32.150744 295.984715 164.0677295 2.215023168 0.035582 125 81 17683 YKL006W intron no 498 161 178 32.264672 298.301288 165.28298 2.218228134 0.024921 125 82 17131 YHR010W intron no 661 341 362 30.273548 324.107954 177.190751 2.248441049 -0.194361 125 83 6536 snR46 snR46 yes 397 171 190 34.421701 295.927223 165.174462 2.217942901 0.087825 125 84 7757 snoRNA cluster1 snR76 yes 1574 581 597 83.110225 395.447605 239.278915 2.378904431 -0.339507 125 85 1744 Leu7 LeuTAA tRNA yes 284 16 27 221.170513 404.2228 312.6966565 2.495123238 0.372352 125 86 4394 telomerase RNA telomerase yes 1501 1006 1027 30.414018 301.750948 166.082483 2.220323829 -0.05793 125 87 2981 Ser1 SerAGA_i 3_flank no 283 34.666459 308.435645 171.551052 2.234393386 -0.011554 125 88 17612 YJR021C 5_exon no 180 21 37 36.915797 294.215148 165.5654725 2.218969773 0.131128 125 89 20422 YGL031C spliced yes 40 9 28 35.005718 332.425739 183.7157285 2.264146339 -0.20538 125 90 9765 RUF4 RUF4 yes 988 601 622 30.93942 332.870398 181.904909 2.259844419 -0.247064 125 91 14936 MT_Asn tRNA/3_flank no 271 166 187 30.971718 333.48974 182.230729 2.260621613 -0.251226 125 92 683 Gln3 GlnTTG_ii 5_flank no 272 30.869458 292.456802 161.66313 2.208610983 0.015192 125 93 223 Arg3 ArgCCG 5_flank no 272 30.624181 295.512011 163.068096 2.212369 -0.012273 125 94 20839 YLL050C spliced yes 40 5 21 32.329238 299.030773 165.6800055 2.2192701 0.022512 125 95 16381 YER007C intron no 203 61 78 31.92208 319.759291 175.8406855 2.245119368 -0.134808 125 96 4131 SRP SRP yes 875 546 560 45.678706 319.912825 182.7957655 2.261966131 -0.064654 125 97 1284 Ile2 IleTAT_i tRNA yes 333 56 68 51.395962 304.911559 178.1537605 2.250794994 0.09109 125 98 14081 MT_COB bi4 no 7308 5401 5422 29.328076 297.531524 163.4298 2.213331249 -0.069969 125 99 15719 YBR255C 5_exon no 194 21 38 37.447408 288.260404 162.853906 2.211798179 0.18758 125 100 15635 YBR186W exon/intron no 213 41 57 33.702309 336.703381 185.202845 2.267647654 -0.244569 125 101 21751 copy of SH12972 no 13084 29.965832 307.88648 168.926156 2.2276969 -0.110493 125 102 15159 MT_Val 5_flank no 276 61 80 30.282323 304.54871 167.4155165 2.223795707 -0.079454 125 103 18444 YMR142C intron no 502 381 402 32.673772 362.768886 197.721329 2.296053521 -0.455736 125 104 11900 "rRNA(18S,5.8S,25S)" 25S yes 7956 6386 6401 212.651217 545.073016 378.8621165 2.578481181 -0.251005 126 2 6364 snR43 snR43 yes 409 61 77 34.932777 310.487749 172.710263 2.237318146 -0.024773 126 3 14799 MT_Lys; Arg1; Gly tRNALys/intergenic no 682 166 190 28.823529 341.661928 185.2427285 2.267741169 -0.342726 126 4 244 Arg3 ArgCCG 3_flank no 272 30.658164 285.945124 158.301644 2.199485425 0.049478 126 5 10348 RUF7 RUF7 yes 700 351 368 30.522288 279.313951 154.9181195 2.190102217 0.076396 126 6 5033 snR10 snR10 yes 445 196 210 72.413982 316.746072 194.580027 2.289098259 0.111795 126 7 6004 snR37 5_flank no 586 74.065794 315.686705 194.8762495 2.289758913 0.129512 126 8 7317 snR66 snR66/3_flank no 286 30.220063 314.934103 172.577083 2.236983124 -0.143341 126 9 8105 snoRNA cluster 3; 5_flank no 743 36 48 47.525815 341.296879 194.411347 2.288721609 -0.225724 126 10 18430 YMR142C intron no 502 101 118 32.070953 279.530146 155.8005495 2.192568985 0.138297 126 11 6611 snR47 3_flank no 299 35.934431 318.564551 177.249491 2.248584997 -0.083985 126 12 3276 Thr2 ThrCGT 5_flank no 272 33.105443 316.681697 174.89357 2.242773843 -0.095835 126 13 21470 copy of SH1240 no 274 34.153735 290.77692 162.4653275 2.21076069 0.127978 126 14 18473 YMR143W intron no 644 461 477 32.303316 306.018392 169.160854 2.228299869 -0.021343 126 15 2499 Pro1 ProAGG 5_flank/tRNA no 272 55.697001 451.868495 253.782748 2.404462096 -0.870013 126 16 18871 YNR053C intron no 631 401 418 30.381876 285.696034 158.038955 2.198764149 0.039148 126 17 13144 MT_COX1 intronic no 13084 6361 6380 28.362297 322.696699 175.529498 2.244350111 -0.254424 126 18 5847 snR35 snR35 yes 740 421 440 28.244791 309.323677 168.784234 2.227331877 -0.180832 126 19 19576 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 221 240 28.159277 294.821152 161.4902145 2.208146211 -0.120758 126 20 4158 SRP 3_flank no 875 57.017733 345.479083 201.248408 2.303732454 -0.199119 126 21 17937 YLR093C intron no 241 141 158 36.014562 290.720757 163.3676595 2.213166087 0.150422 126 22 10037 RUF6 RUF6 yes 1251 31 48 30.545121 309.805115 170.175118 2.23089606 -0.101937 126 23 2018 Lys3 LysTTT_i tRNA/intron no 296 36 i16 28.014433 291.157221 159.585827 2.202994319 -0.112118 126 24 20891 YLR287C-A spliced yes 40 1 20 37.44344 308.420923 172.9321815 2.23787582 0.010186 126 25 8230 snoRNA cluster 3; 3_flank no 743 661 678 31.900862 290.267201 161.0840315 2.20705249 0.063348 126 26 14740 MT_Cys; His 3_flank no 456 421 446 30.249278 305.098909 167.6740935 2.224465967 -0.083917 126 27 11163 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2701 2724 30.536854 299.970763 165.2538085 2.218151477 -0.042827 126 28 10463 RUF8 RUF8 yes 1151 241 258 32.807897 324.246997 178.527447 2.251704994 -0.157917 126 29 9054 snR17a / U3a 3_flank no 690 37.085902 298.813922 167.949912 2.225179781 0.094702 126 30 17957 YLR185W intron no 459 121 138 34.977203 310.908126 172.9426645 2.237902146 -0.02759 126 31 19026 YOR182C intron no 511 401 418 32.792778 286.614319 159.7035485 2.203314566 0.11546 126 32 5900 snR36 5_flank no 555 30.570972 330.582283 180.5766275 2.256661538 -0.234978 126 33 3581 Val1 ValAAC_i 5_flank no 274 32.470531 318.674259 175.572395 2.244456233 -0.119354 126 34 4818 snR5 3_flank no 404 30.236506 287.256165 158.7463355 2.200703709 0.024444 126 35 2962 Ser1 SerAGA_i tRNA yes 283 41 e21 42.376434 298.049746 170.21309 2.230992956 0.117058 126 36 18432 YMR142C intron no 502 141 160 32.028048 316.479186 174.253617 2.241181802 -0.107954 126 37 8545 snR19 / U1 RNA U1 yes 868 221 236 46.295249 306.189996 176.2426225 2.246110947 0.055592 126 38 1333 Ile3 IleTAT_ii tRNA-intron no 333 i9 i24 32.049923 265.730307 148.890115 2.172865865 0.218666 126 39 9193 snR7 U5 RNA 3_flank no 415 30.108729 288.050562 159.0796455 2.201614615 0.014186 126 40 19188 YPL079W intron no 521 441 463 28.164556 288.694638 158.429597 2.199836317 -0.092504 126 41 1243 Ile2 IleTAT_i 5_flank no 333 36.453289 315.044239 175.748764 2.244892279 -0.051628 126 42 16292 YDR450W intron no 535 121 138 36.455115 327.568352 182.0117335 2.260099386 -0.160547 126 43 12323 5S rRNA NTS2 no 1420 571 588 34.308014 258.639986 146.474 2.165760542 0.351717 126 44 17477 YJL001W intron no 216 121 140 30.055511 293.957207 162.006359 2.209532062 -0.022133 126 45 3716 Val3 ValCAC tRNA/3_flank no 273 40.008132 289.180654 164.594393 2.216415037 0.196213 126 46 795 Glu1 GluCTC 5_flank/tRNA no 272 39.689913 314.624572 177.1572425 2.248358912 -0.040137 126 47 3063 Ser3 SerCGA tRNA yes 301 11 25 926.819117 830.747194 878.7831555 2.943881724 0.680531 126 48 5350 snR30 snR30/3_flank no 801 37.005887 312.667009 174.836448 2.242631975 -0.029091 126 49 8414 snoRNA cluster 5 snR190 yes 586 236 252 41.575322 317.12491 179.350116 2.253701662 -0.055973 126 50 6099 snR37 3_flank no 586 40.20065 275.652256 157.926453 2.198454881 0.327484 126 51 21922 copy of SH20202 no 40 165.604147 336.013535 250.808841 2.399342841 0.499617 126 52 17557 YJL189W intron no 486 141 160 28.058117 288.400886 158.2295015 2.19928746 -0.097031 126 53 6845 snR52 3_flank no 292 48.878749 322.217143 185.547946 2.268456151 -0.06697 126 54 19676 SIR1 2.4 SIR1 2.4 yes 401 241 258 29.805664 265.270927 147.5382955 2.168904762 0.108172 126 55 12259 5S rRNA NTS2 no 1420 251 267 52.911017 382.06566 217.4883385 2.337435975 -0.480316 126 56 2301 Phe2 PheGAA_ii 3_flank no 292 49.512226 338.976759 194.2444925 2.288348714 -0.195966 126 57 15666 YBR189W intron/exon no 513 461 476 30.584514 271.83722 151.210867 2.179583004 0.115691 126 58 11643 "rRNA(18S,5.8S,25S)" 25S yes 7956 5101 5114 73.829073 331.533304 202.6811885 2.306813442 0.009941 126 59 8773 LSR1 / U2 RNA U2 yes 1375 506 524 31.439807 292.953648 162.1967275 2.210042088 0.031184 126 60 3864 RNaseP RNaseP yes 569 286 298 62.374237 282.837571 172.605904 2.237055647 0.341259 126 61 14518 MT_21S 21S_rRNA3 yes 4639 1981 1997 60.869785 326.098126 193.4839555 2.286644957 -0.029807 126 62 20351 YER102W spliced yes 40 21 40 32.284132 306.889835 169.5869835 2.229392515 -0.028617 126 63 19425 YPR132W intron no 465 221 237 36.47816 298.493587 167.4858735 2.223978183 0.090512 126 64 7960 snoRNA cluster 2 5_flank no 739 36 55 32.322083 302.615592 167.4688375 2.223934006 0.00034 126 65 16233 YDR381W intron no 866 561 578 32.18573 324.955906 178.570818 2.251810488 -0.171242 126 66 19637 RNA14 2.2 RNA14 2.2 yes 401 241 253 46.238395 279.393361 162.815878 2.211696756 0.306632 126 67 18027 YLR306W 3_exon no 234 201 221 47.852317 346.057155 196.954736 2.294366428 -0.259599 126 68 14736 MT_Cys; His 3_flank no 456 361 387 29.36233 311.301665 170.3319975 2.231296239 -0.152049 126 69 1081 Gly3 GlyGCC 3_flank no 271 71.908242 293.401098 182.65467 2.26163078 0.297666 126 70 18583 YNL050C 5_exon no 191 1 23 32.67904 335.913876 184.296458 2.265516989 -0.246907 126 71 21228 YOR234C spliced yes 40 9 26 40.204333 288.018486 164.1114095 2.215138776 0.207911 126 72 19835 Negative Control no 60 NA #VALUE! 36.144902 306.138154 171.141528 2.233355405 0.024216 126 73 16721 YGL033W 5_exon no 170 1 19 46.783482 387.616924 217.200203 2.336860227 -0.559889 126 74 8310 snoRNA cluster4 intergenic no 638 336 352 34.310169 341.213695 187.761932 2.273607545 -0.280117 126 75 11572 "rRNA(18S,5.8S,25S)" 25S yes 7956 4746 4759 170.975242 956.564178 563.76971 2.751101739 -1.529387 126 76 11469 "rRNA(18S,5.8S,25S)" 25S yes 7956 4231 4246 2960.185182 4193.028636 3576.606909 3.553471211 -0.438357 126 77 3367 Thr4 ThrTGT_ii 5_flank no 272 33.331705 289.776292 161.5539985 2.208317711 0.11228 126 78 14351 MT_ORF9; ORF10 5_flank no 578 31 59 35.732638 317.600497 176.6665675 2.247154371 -0.076031 126 79 10711 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 441 458 32.01198 295.796292 163.904136 2.214589913 0.032237 126 80 3017 Ser2 SerAGA_ii tRNA yes 282 e12 49 30.200166 260.640224 145.420195 2.162624723 0.152053 126 81 11315 "rRNA(18S,5.8S,25S)" 25S yes 7956 3461 3474 721.922816 995.056831 858.4898235 2.933735151 0.074992 126 82 18614 YNL069C intron no 549 441 459 34.516105 316.919205 175.717655 2.244815399 -0.08041 126 83 3903 RNase MRP 5_flank no 540 34.49933 307.520332 171.009831 2.233021078 -0.00621 126 84 13184 MT_COX1 exon4 yes 13084 6961 6977 46.860005 300.023443 173.441724 2.239153582 0.113125 126 85 1897 Lys1 LysCTT_i 5_flank no 272 35.428663 295.736163 165.582413 2.219014207 0.10136 126 86 21227 YOR234C spliced yes 40 5 20 51.981585 310.976306 181.4789455 2.258826247 0.041882 126 87 9450 RUF2 RUF2 yes 468 91 107 28.285687 289.433938 158.8598125 2.201014046 -0.089241 126 88 1737 Leu7 LeuTAA 5_flank no 284 30.467754 329.033156 179.750455 2.254669998 -0.22477 126 89 2078 Lys4 LysTTT_ii intron/tRNA no 296 i19 49 137.140517 375.266873 256.203695 2.408585389 0.120536 126 90 4534 U3b (snR17b) U3b yes 662 226 240 73.999564 305.674843 189.8372035 2.278381328 0.208617 126 91 11504 "rRNA(18S,5.8S,25S)" 25S yes 7956 4406 4423 671.017182 1443.517066 1057.267124 3.024184728 -0.6297 126 92 20885 YLR275W spliced yes 40 1 20 28.6181 293.478248 161.048174 2.206955805 -0.089566 126 93 4814 snR5 3_flank no 404 32.52377 334.842031 183.6829005 2.264068729 -0.24098 126 94 3294 Thr2 ThrCGT tRNA/3_flank no 272 30.103489 285.609368 157.8564285 2.198262273 0.025249 126 95 6942 snR58 snR58 yes 296 71 88 31.741581 310.079514 170.9105475 2.232768865 -0.063446 126 96 18324 YML085C 3_exon no 216 181 197 33.398524 312.592526 172.995525 2.238034869 -0.060066 126 97 10927 "rRNA(18S,5.8S,25S)" 18S yes 7956 1521 1536 39.150281 348.558972 193.8546265 2.28747617 -0.323776 126 98 20859 YLR078C spliced yes 40 13 25 72.138489 368.708515 220.423502 2.343257898 -0.256273 126 99 5300 snR30 snR30 yes 801 351 367 57.353325 324.842858 191.0980915 2.28125635 -0.041293 126 100 6472 snR45 3_flank no 372 29.576582 279.937717 154.7571495 2.189650722 0.024522 126 101 8851 LSR1 / U2 RNA U2 yes 1375 896 913 61.634521 426.389009 244.011765 2.387410766 -0.681501 126 102 13911 MT_COB bi3 no 7308 2851 2875 30.246327 317.526229 173.886278 2.240265312 -0.157526 126 103 7655 snoRNA cluster1 5_flank no 1574 71 89 32.665482 268.910932 150.788207 2.178367377 0.228786 126 104 3057 Ser3 SerCGA 5_flank no 301 35.108405 328.564371 181.836388 2.259680796 -0.172467 127 2 18972 YOR096W intron no 501 121 138 36.765112 299.232998 167.999055 2.225306839 0.087642 127 3 4337 telomerase RNA telomerase yes 1501 721 741 40.450116 308.326031 174.3880735 2.24151678 0.018098 127 4 9748 RUF4 RUF4 yes 988 516 532 34.287443 272.34207 153.3147565 2.185583958 0.256046 127 5 12932 MT_COX1 ai2 no 13084 3181 3195 32.123173 286.794952 159.4590625 2.202649206 0.092757 127 6 17104 YHL001W 3_exon no 498 461 475 55.041388 377.082528 216.061958 2.334578307 -0.433032 127 7 9554 RUF3 RUF3 yes 631 156 170 839.688845 1395.948742 1117.818794 3.048371407 -0.292542 127 8 1094 Gly4 GlyTCC 5_flank no 272 29.750272 354.916906 192.333589 2.284055136 -0.42178 127 9 750 Gln4 GlnTTG_iii tRNA yes 272 21 38 31.579696 280.928798 156.254247 2.19383183 0.112989 127 10 11743 "rRNA(18S,5.8S,25S)" 25S yes 7956 5601 5618 1511.022829 3403.052688 2457.037759 3.390411831 -0.940581 127 11 5445 snR31 3_flank no 425 29.725641 336.763467 183.244554 2.263031076 -0.292371 127 12 3699 Val3 ValCAC 5_flank no 273 51.747788 284.085347 167.9165675 2.225093548 0.279522 127 13 15746 YCR031C 5_exon no 407 1 18 37.573579 310.351281 173.96243 2.240455465 -0.00693 127 14 7432 snR69 snR69 yes 301 61 78 81.0215 509.633861 295.3276805 2.470304154 -0.923284 127 15 8532 snR19 / U1 RNA U1 yes 868 156 172 37.833404 413.399773 225.6165885 2.353371028 -0.787689 127 16 9235 snR6 / U6 RNA U6 yes 312 46 62 137.072889 446.098647 291.585768 2.464766323 -0.241923 127 17 11603 "rRNA(18S,5.8S,25S)" 25S yes 7956 4901 4920 16086.19705 26857.04983 21471.62344 4.331864882 -1.462639 127 18 4634 snR3 snR3 yes 395 86 102 409.617088 820.480419 615.0487535 2.788909543 -0.27588 127 19 4342 telomerase RNA telomerase yes 1501 746 764 31.921717 277.799864 154.8607905 2.189941472 0.144859 127 20 4527 U3b (snR17b) U3b yes 662 191 205 75.411511 357.140867 216.276189 2.335008708 -0.157721 127 21 17688 YKL006W intron no 498 261 279 34.149251 274.797897 154.473574 2.188854195 0.2353 127 22 10000 RUF5-1 3_flank no 975 28.698499 308.229426 168.4639625 2.226507012 -0.157667 127 23 8226 snoRNA cluster 3; snR51/3_flank no 743 641 658 28.133505 294.632175 161.38284 2.207857354 -0.121327 127 24 16236 YDR381W intron no 866 621 639 33.588756 311.752513 172.6706345 2.237218485 -0.051065 127 25 14926 MT_Asn 5_flank no 271 16 32 32.027137 277.333703 154.68042 2.189435343 0.151394 127 26 11221 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2991 3013 30.32914 306.16038 168.24476 2.225941547 -0.087558 127 27 12598 MT_15S 15S yes 1848 721 737 49.305841 315.098606 182.2022235 2.260553673 -0.005861 127 28 20951 YLR448W spliced yes 40 21 33 39.02058 307.683607 173.3520935 2.238929091 0.020641 127 29 7045 snR62 snR62 yes 300 16 35 32.769961 284.396219 158.58309 2.200256876 0.129037 127 30 15826 YDL064W intron/exon no 210 161 180 79.796592 391.875795 235.8361935 2.372610457 -0.342942 127 31 8338 snoRNA cluster4 snR53 yes 638 476 492 33.584802 296.426796 165.005799 2.217499207 0.073465 127 32 17361 YIL052C intron no 572 121 138 34.43391 317.621411 176.0276605 2.245580917 -0.086867 127 33 4951 snR9 snR9 yes 387 161 178 34.237514 285.234661 159.7360875 2.203403043 0.169364 127 34 11587 "rRNA(18S,5.8S,25S)" 25S yes 7956 4821 4834 1420.300619 2858.007998 2139.154309 3.330242114 -0.74333 127 35 5853 snR35 snR35 yes 740 451 470 31.886402 316.999281 174.4428415 2.241653152 -0.113847 127 36 2358 Phe3 PheGAA_iii 3_flank no 291 37.893468 297.400286 167.646877 2.224395468 0.112944 127 37 6029 snR37 snR37 yes 586 61 80 29.795301 302.71281 166.2540555 2.220772248 -0.085251 127 38 7033 snR62 5_flank no 300 44.092553 318.399088 181.2458205 2.258268001 -0.0586 127 39 19151 YPL075W intron no 851 541 560 34.04341 320.243759 177.1435845 2.248325428 -0.111909 127 40 13807 MT_COB exon2/bi2 no 7308 1291 1310 30.083238 291.61095 160.847094 2.206413219 -0.006415 127 41 1489 Leu3 LeuCAA_iii 5_flank no 314 30.153111 299.100349 164.62673 2.216500352 -0.050682 127 42 4812 snR5 3_flank no 404 33.224754 329.716192 181.470473 2.258805971 -0.194027 127 43 18992 YOR122C 5_exon no 309 21 38 38.254049 379.092718 208.6733835 2.319467058 -0.556277 127 44 1787 Leu8 LeuTAG_i 5_flank no 301 36.022859 311.890067 173.956463 2.240440569 -0.024598 127 45 15227 MT_COX3 cox3 no 1010 826 848 29.710232 297.197336 163.453784 2.213394979 -0.054381 127 46 16161 YDR129C intron no 211 141 157 33.463341 279.350284 156.4068125 2.194255665 0.183862 127 47 19497 YPT1 YPT1 yes 402 241 260 33.158277 317.471761 175.315019 2.243819123 -0.101333 127 48 16534 YER131W intron no 461 301 320 28.916491 291.303616 160.1100535 2.204418603 -0.063545 127 49 16847 YGL178W 3_exon no 740 721 738 28.643118 289.979907 159.3115125 2.202247161 -0.072239 127 50 10537 RUF8 RUF8 yes 1151 611 630 30.303861 324.327619 177.31574 2.248747289 -0.194563 127 51 14209 MT_ATP9 5_flank no 431 31 59 26.222722 316.621894 171.422308 2.234067338 -0.326462 127 52 1895 Lys1 LysCTT_i 5_flank no 272 39.343797 310.742469 175.043133 2.243145078 -0.006246 127 53 14366 MT_ORF9; ORF10 ORF9/intergenic no 578 256 284 27.820601 326.582971 177.201786 2.248468095 -0.296602 127 54 8779 LSR1 / U2 RNA U2 yes 1375 536 548 37.293516 279.141206 158.217361 2.199254136 0.26532 127 55 1890 Lys1 LysCTT_i 5_flank no 272 70.110752 359.428249 214.7695005 2.331972607 -0.208995 127 56 3097 Ser3 SerCGA 3_flank no 301 37.854264 304.673841 171.2640525 2.233666216 0.045336 127 57 2929 Pro8 ProTGG_vii 3_flank no 305 32.506659 302.959661 167.73316 2.224618929 0.004194 127 58 730 Gln4 GlnTTG_iii 5_flank no 272 62.787954 291.863855 177.3259045 2.248772184 0.261899 127 59 7688 snoRNA cluster1 intergenic no 1574 236 255 29.448856 298.043443 163.7461495 2.214171096 -0.068843 127 60 8676 LSR1 / U2 RNA U2 yes 1375 21 38 33.854019 297.234618 165.5443185 2.21891428 0.070045 127 61 10282 RUF7 RUF7 yes 700 21 36 70.378458 320.092493 195.2354755 2.290558735 0.073923 127 62 15536 YBR078W intron no 430 81 100 34.3618 250.925559 142.6436795 2.154252533 0.403223 127 63 11812 "rRNA(18S,5.8S,25S)" 25S yes 7956 5946 5967 32.387557 276.107704 154.2476305 2.188218501 0.171237 127 64 12456 5S rRNA NTS2/5S no 1420 1236 1252 32.365874 276.767921 154.5668975 2.18911649 0.16614 127 65 2059 Lys4 LysTTT_ii 5_flank no 296 40.463835 307.239554 173.8516945 2.240178928 0.027992 127 66 14628 MT_21S Sce1 no 4639 3631 3652 29.999353 312.535792 171.2675725 2.233675142 -0.136921 127 67 3044 Ser3 SerCGA 5_flank no 301 45.926801 295.067657 170.497229 2.231717325 0.155947 127 68 15599 YBR089C intron no 214 141 160 30.410553 301.128383 165.769468 2.219504544 -0.054246 127 69 13288 MT_COX1 exon5a/ai5 no 13084 8521 8540 29.071631 298.580688 163.8261595 2.21438325 -0.088088 127 70 14539 MT_21S 21S_rRNA3 yes 4639 2296 2320 26.794613 311.102713 168.948663 2.227754759 -0.269523 127 71 9846 RUF5-1 RUF5-1 yes 975 36 57 28.465657 282.710028 155.5878425 2.191975659 -0.048086 127 72 2596 Pro3 ProTGG_ii 5_flank no 303 47.547766 305.978202 176.762984 2.247391324 0.062757 127 73 15644 YBR189W 5_exon no 513 21 38 45.503417 364.175132 204.8392745 2.311413229 -0.406636 127 74 16214 YDR381W intron no 866 181 198 39.817842 391.418536 215.618189 2.333685394 -0.630901 127 75 14733 MT_Cys; His tRNAhis yes 456 316 332 35.246947 355.269077 195.258012 2.290608863 -0.390445 127 76 9095 snR14 / U4 RNA U4 yes 360 91 107 34.647765 300.28026 167.4640125 2.223921493 0.054447 127 77 18893 YOL120C intron no 547 61 80 33.116105 335.481019 184.298562 2.265521947 -0.238219 127 78 6870 snR56 5_flank no 288 28.545898 283.128346 155.837122 2.192670919 -0.045681 127 79 20090 YDL012C spliced yes 40 13 30 31.930248 290.163386 161.046817 2.206952146 0.064968 127 80 16713 YGL031C intron no 556 401 418 30.172955 313.001318 171.5871365 2.234484727 -0.133636 127 81 1471 Leu2 LeuCAA_ii 3_flank no 314 36.519688 287.810386 162.165037 2.209957225 0.181054 127 82 18717 YNL130C intron no 541 421 437 34.509088 280.241876 157.375482 2.196937073 0.210128 127 83 11797 "rRNA(18S,5.8S,25S)" 25S yes 7956 5871 5889 1604.937325 6009.887474 3807.4124 3.58062992 -1.788391 127 84 19277 YPL143W intron no 625 421 437 38.459464 305.239811 171.8496375 2.23514862 0.041599 127 85 7454 snR69 3_flank no 301 28.089088 282.853348 155.471218 2.191650001 -0.069453 127 86 11207 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2921 2941 32.123626 306.519775 169.3217005 2.228712621 -0.029693 127 87 8179 snoRNA cluster 3; snR70 yes 743 406 422 36.242048 313.217089 174.7295685 2.242366404 -0.035907 127 88 10167 RUF6 RUF6 yes 1251 681 695 65.319712 308.436119 186.8779155 2.271557981 0.13617 127 89 19773 Negative Control no 60 NA #VALUE! 38.59003 284.439178 161.514604 2.208211797 0.233005 127 90 19145 YPL075W intron no 851 421 442 28.389699 303.226214 165.8079565 2.219605367 -0.145528 127 91 10200 RUF6 RUF6 yes 1251 846 863 30.49604 274.761269 152.6286545 2.183636076 0.096943 127 92 4764 snR5 5_flank/snR5 no 404 32.468062 317.031102 174.749582 2.242416146 -0.10661 127 93 21703 copy of SH10878 no 7956 1976.774476 1554.288836 1765.531656 3.246875509 0.649576 127 94 2721 Pro5 ProTGG_iv 5_flank/tRNA no 303 50.197724 290.026391 170.1120575 2.230735097 0.217417 127 95 6483 snR46 5_flank no 397 31.50397 304.312565 167.9082675 2.225072081 -0.036727 127 96 8799 LSR1 / U2 RNA U2 yes 1375 636 650 35.182437 261.132456 148.1574465 2.170723484 0.36034 127 97 13726 MT_COB 5_flank/exon1 no 7308 76 103 29.080043 351.29058 190.1853115 2.279176972 -0.405834 127 98 19468 ADH1 ADH1 yes 400 61 78 70.895882 360.272439 215.5841605 2.333616849 -0.209205 127 99 12516 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 136 160 29.257986 261.259223 145.2586045 2.162141868 0.098012 127 100 1297 Ile2 IleTAT_i 3_flank no 333 31.542586 300.410042 165.976314 2.220046116 -0.011684 127 101 18738 YNL162W intron no 612 81 100 34.964445 376.22021 205.5923275 2.313006903 -0.549353 127 102 2083 Lys4 LysTTT_ii tRNA yes 296 58 70 40.57006 317.020787 178.7954235 2.252356398 -0.058559 127 103 15150 MT_Thr1 3_flank no 272 181 207 30.583959 297.670754 164.1273565 2.215180975 -0.027046 127 104 4507 U3b (snR17b) U3b yes 662 91 108 35.127367 297.210955 166.169161 2.220550427 0.08553 128 2 1257 Ile2 IleTAT_i 5_flank no 333 28.660704 290.40162 159.531162 2.202845529 -0.073221 128 3 15287 MT_9S 9S yes 701 481 498 30.397745 330.097249 180.247497 2.255869243 -0.233702 128 4 8544 snR19 / U1 RNA U1 yes 868 216 233 29.183723 250.701276 139.9424995 2.145949627 0.139533 128 5 21294 YPL175W spliced yes 40 21 33 58.729644 351.776953 205.2532985 2.312290145 -0.234238 128 6 7728 snoRNA cluster1 intergenic no 1574 436 453 29.664941 377.060138 203.3625395 2.308270957 -0.572536 128 7 17141 YHR010W intron no 661 541 557 38.876471 381.315077 210.095774 2.322417317 -0.567743 128 8 6416 snR45 5_flank no 372 42.435253 374.415096 208.4251745 2.318950174 -0.498026 128 9 10819 "rRNA(18S,5.8S,25S)" 18S yes 7956 981 999 128.361594 437.453141 282.9073675 2.451644258 -0.254465 128 10 4548 U3b (snR17b) U3b yes 662 296 315 29.225206 300.427237 164.8262215 2.217026303 -0.091471 128 11 11102 "rRNA(18S,5.8S,25S)" 18S yes 7956 2396 2413 38.619218 299.11777 168.868494 2.22754863 0.098587 128 12 15360 YBL026W intron/exon no 228 181 202 35.014855 310.177674 172.5962645 2.237031392 -0.021332 128 13 12518 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 166 178 31.431459 255.537545 143.484502 2.156804995 0.240473 128 14 20176 YDL189W spliced yes 40 5 17 104.318515 413.830455 259.074485 2.413424644 -0.291672 128 15 13425 MT_COX1 intronic no 13084 10576 10598 26.999114 319.638266 173.31869 2.238845398 -0.293752 128 16 7439 snR69 snR69/3_flank no 301 29.916864 313.832662 171.874763 2.235212112 -0.147421 128 17 2223 Phe1 PheGAA_i 5_flank/tRNA no 292 35.648984 279.709406 157.679195 2.197774394 0.241621 128 18 12125 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7511 7528 39.453105 340.22824 189.8406725 2.278389264 -0.256324 128 19 3926 RNase MRP RNaseMRP yes 540 46 67 31.843711 288.014308 159.9290095 2.203927248 0.075821 128 20 2116 Met1 MetCAT_i 5_flank no 273 37.724928 307.318792 172.52186 2.236844132 0.020873 128 21 12917 MT_COX1 ai2 no 13084 2956 2972 65.285379 330.503044 197.8942115 2.296433091 -0.0365 128 22 20665 YIL052C spliced yes 40 21 37 70.080058 328.15951 199.119784 2.299114412 0.01076 128 23 5189 snR13 snR13 yes 324 101 121 35.153538 276.220661 155.6870995 2.192252628 0.256059 128 24 14109 MT_COB intronic no 7308 5821 5842 31.67213 316.619179 174.1456545 2.240912642 -0.113674 128 25 4787 snR5 snR5 yes 404 106 125 30.065814 285.739184 157.902499 2.198389003 0.022698 128 26 21391 Phe1_5 spliced yes 40 25 37 96.438929 361.299177 228.869053 2.359587073 -0.043234 128 27 10409 RUF8 5_flank no 1151 32.632363 306.401799 169.517081 2.229213465 -0.020241 128 28 17658 YKL002W intron no 168 61 78 32.695842 286.393893 159.5448675 2.202882838 0.113785 128 29 2632 Pro3 ProTGG_ii 3_flank no 303 30.566832 285.197521 157.8821765 2.198333105 0.050904 128 30 12163 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7701 7717 85.449627 418.89399 252.1718085 2.401696533 -0.452664 128 31 15596 YBR089C intron no 214 81 97 36.428087 293.553167 164.990627 2.217459273 0.131188 128 32 3271 Thr2 ThrCGT 5_flank no 272 63.97639 328.193203 196.0847965 2.292443922 -0.027695 128 33 132 Arg1 ArgACG_i tRNA yes 273 36 50 53.318226 292.45661 172.887418 2.237763388 0.210201 128 34 14229 MT_ATP9 ATP9/3 no 431 331 359 29.720078 321.256203 175.4881405 2.244247772 -0.197357 128 35 12250 5S rRNA NTS2 no 1420 206 218 33.634713 300.554202 167.0944575 2.222962045 0.039906 128 36 14050 MT_COB bi4 no 7308 4936 4953 31.575836 294.483795 163.0298155 2.212267037 0.0261 128 37 2067 Lys4 LysTTT_ii tRNA yes 296 1 17 41.676305 285.129884 163.4030945 2.213260277 0.239359 128 38 15079 MT_COX 2; ORF1 ORF1exon1 yes 2427 1786 1808 29.684114 286.903508 158.293811 2.199463935 -0.002569 128 39 12808 MT_COX1 ai1 no 13084 1321 1342 31.827949 304.355071 168.09151 2.225545779 -0.026301 128 40 4702 snR4 snR4 yes 386 46 65 29.921924 278.7627 154.342312 2.188485002 0.04816 128 41 19784 Negative Control no 60 NA #VALUE! 36.107877 256.635651 146.371764 2.165457307 0.419434 128 42 14496 MT_21S 21S_rRNA3 yes 4639 1651 1665 56.610057 365.122059 210.866058 2.324006679 -0.341504 128 43 19261 YPL143W intron no 625 101 120 29.925968 300.696303 165.3111355 2.218302109 -0.068376 128 44 16784 YGL103W intron no 611 361 377 39.904181 277.75466 158.8294205 2.200930951 0.305642 128 45 14809 MT_Lys; Arg1; Gly intergenic no 682 316 344 29.566542 317.693668 173.630105 2.239625028 -0.182234 128 46 8672 LSR1 / U2 RNA U2 yes 1375 1 17 33.300633 256.55458 144.9276065 2.16115112 0.32494 128 47 14015 MT_COB exon4 yes 7308 4411 4427 48.864971 300.27625 174.5706105 2.241971131 0.119126 128 48 19986 YBL092W spliced yes 40 1 18 42.509938 315.169538 178.839738 2.252464025 -0.035842 128 49 15142 MT_Thr1 5_flank no 272 61 89 30.466674 307.881713 169.1741935 2.228334115 -0.093156 128 50 21685 copy of SH10240 no 1251 28.292221 300.759772 164.5259965 2.21623453 -0.139996 128 51 4098 SRP SRP yes 875 381 393 64.605143 289.248201 176.926672 2.247793308 0.294648 128 52 4721 snR4 snR4 yes 386 141 157 46.975643 292.36954 169.6725915 2.229611693 0.18436 128 53 5422 snR31 snR31 yes 425 176 192 48.75628 316.795971 182.7761255 2.261919467 -0.022795 128 54 9881 RUF5-1 RUF5-1 yes 975 211 225 45.000501 305.717288 175.3588945 2.243927799 0.05579 128 55 5647 snR34 snR34 yes 750 156 175 29.961693 296.83063 163.3961615 2.21324185 -0.043307 128 56 8425 snoRNA cluster 5 intergenic no 586 291 312 30.270381 336.226124 183.2482525 2.263039842 -0.280905 128 57 4966 snR9 3_flank no 387 36.536825 262.098374 149.3175995 2.174110999 0.392986 128 58 15573 YBR084C intron no 606 221 238 29.140618 297.951492 163.546055 2.213640073 -0.081596 128 59 2836 Pro7 ProTGG_vi 5_flank/tRNA no 303 35.562823 312.861188 174.2120055 2.24107808 -0.036191 128 60 17826 YKR057W 3_exon no 422 381 398 29.880074 313.799512 171.839793 2.235123741 -0.148511 128 61 17382 YIL052C 3_exon no 572 541 559 32.180579 308.015963 170.098271 2.230699899 -0.038999 128 62 15044 MT_COX 2; ORF1 ORF1exon1 yes 2427 1261 1283 28.244159 323.279858 175.7620085 2.244925007 -0.262107 128 63 8471 snoRNA cluster 5 3_flank no 586 521 537 59.400042 318.297442 188.848742 2.276114096 0.022689 128 64 1640 Leu5 LeuCAA_v intron/tRNA no 315 i28 e1 277.992262 450.471172 364.231717 2.561377761 0.373543 128 65 5912 snR36 snR36 yes 555 16 35 42.606432 360.089489 201.3479605 2.303947235 -0.394052 128 66 9323 RUF1 RUF1 yes 750 191 212 32.107886 295.138319 163.6231025 2.213844623 0.039461 128 67 3577 Tyr2 TyrGTA_ii 3_flank no 289 31.822243 298.407765 165.115004 2.217786539 0.009846 128 68 14685 MT_21S 21S_rRNA4 yes 4639 4486 4507 29.469854 311.445649 170.4577515 2.231616755 -0.149083 128 69 16218 YDR381W intron no 866 261 278 31.079759 287.306639 159.193199 2.20192451 0.054994 128 70 1388 Leu1 LeuCAA_i tRNA yes 315 11 22 54.232495 306.067954 180.1502245 2.255634808 0.095419 128 71 501 Asp2 AspGTC_ii tRNA/3_flank no 272 36.151018 314.492248 175.321633 2.243835507 -0.047489 128 72 8667 LSR1 / U2 RNA 5_flank no 1375 55.125329 299.221925 177.173627 2.248399076 0.158824 128 73 21409 Ser3 spliced yes 40 13 29 31.890581 292.20779 162.0491855 2.209646853 0.050743 128 74 8454 snoRNA cluster 5 snR128 yes 586 436 448 45.329412 310.705202 178.017307 2.250462227 0.012436 128 75 15684 YBR191W intron no 488 321 337 64.9841 334.830503 199.9073015 2.300828657 -0.070521 128 76 12796 MT_COX1 ai1 no 13084 1141 1160 32.439755 374.411437 203.425596 2.308405597 -0.544656 128 77 17468 YIL148W intron/exon no 534 461 485 30.903374 318.637776 174.770575 2.242468315 -0.141519 128 78 18017 YLR306W 5_exon no 234 1 19 41.33021 324.49512 182.912665 2.262243777 -0.119835 128 79 2472 Phe5 PheGAA_v 3_flank no 291 33.775426 288.495901 161.1356635 2.207191672 0.134243 128 80 14182 MT_COB exon6 yes 7308 6916 6935 28.00618 302.197374 165.101777 2.217751748 -0.162135 128 81 14589 MT_21S Sce1 no 4639 3046 3072 30.228181 335.620688 182.9244345 2.262271721 -0.277028 128 82 15673 YBR191W intron no 488 101 117 36.455204 280.508394 158.481799 2.199979392 0.243831 128 83 21637 copy of SH8142 no 743 1902.091291 1731.514001 1816.802646 3.259307754 0.429151 128 84 4248 telomerase RNA telomerase yes 1501 276 295 40.332026 302.539036 171.435531 2.234100837 0.070772 128 85 21089 YNL012W spliced yes 40 5 21 50.392056 298.058994 174.225525 2.241111782 0.146248 128 86 2662 Pro4 ProTGG_iii 5_flank no 302 31.894006 287.893352 159.893679 2.203831295 0.078242 128 87 15200 MT_COX3 cox3 no 1010 421 438 33.904819 296.922564 165.4136915 2.218571454 0.073262 128 88 19463 CYC1 CYC1 yes 400 361 377 37.025107 289.544378 163.2847425 2.212945606 0.171901 128 89 1059 Gly3 GlyGCC tRNA yes 271 32 48 117.382031 322.14222 219.7621255 2.341952847 0.340477 128 90 7424 snR69 snR69 yes 301 21 38 30.101857 310.686805 170.394331 2.231455142 -0.122434 128 91 1063 Gly3 GlyGCC tRNA yes 271 54 66 9128.514229 7467.258977 8297.886603 3.918967496 -0.024572 128 92 2467 Phe5 PheGAA_v 3_flank no 291 30.027762 288.147809 159.0877855 2.201636837 0.009553 128 93 21519 copy of SH3380 no 272 31.842112 305.538478 168.690295 2.227090098 -0.032981 128 94 21821 copy of SH16001 no 432 29.535448 298.706412 164.12093 2.215163969 -0.069868 128 95 11526 "rRNA(18S,5.8S,25S)" 25S yes 7956 4516 4534 4744.303847 9731.222306 7237.763077 3.859604363 -1.263387 128 96 16723 YGL033W exon/intron no 170 41 56 50.841708 344.851246 197.846477 2.296328321 -0.23258 128 97 13219 MT_COX1 ai4 no 13084 7486 7512 30.938999 414.678414 222.8087065 2.347932157 -0.833742 128 98 17012 YGR148C intron no 479 161 175 42.880916 313.810345 178.3456305 2.251262474 -0.02275 128 99 5538 snR33 5_flank no 383 27.262925 282.041042 154.6519835 2.189355494 -0.112367 128 100 903 Glu3 GluTTC_ii tRNA yes 272 26 40 57.817183 326.57431 192.1957465 2.283743772 -0.05186 128 101 9618 RUF3 3_flank no 631 29.902434 303.03124 166.466837 2.221327728 -0.083439 128 102 6420 snR45 5_flank no 372 32.327696 301.017822 166.672759 2.221864625 0.010268 128 103 10318 RUF7 RUF7 yes 700 201 216 32.694599 284.397876 158.5462375 2.20015594 0.126622 128 104 6863 snR56 5_flank no 288 33.013302 301.135497 167.0743995 2.222909909 0.02741 129 2 5339 snR30 snR30 yes 801 546 563 42.372821 337.558671 189.965746 2.278675297 -0.224548 129 3 21845 copy of SH17380 no 572 32.187348 272.027581 152.1074645 2.182150527 0.192172 129 4 5309 snR30 snR30 yes 801 396 412 47.302939 296.665883 171.984411 2.235489083 0.145335 129 5 14745 MT_ORF11; Leu; Gln 5_flank no 716 61 82 27.797193 314.222205 171.009699 2.233020743 -0.226441 129 6 17178 YHR021C intron no 650 141 162 40.713493 420.668192 230.6908425 2.363030355 -0.812949 129 7 18631 YNL096C intron no 445 241 253 32.920386 311.600992 172.260689 2.23618618 -0.058186 129 8 1188 Ile1 IleAAT 5_flank no 274 74.72518 523.816903 299.2710415 2.476064695 -1.039444 129 9 8759 LSR1 / U2 RNA U2 yes 1375 436 453 30.751048 425.313513 228.0322805 2.357996331 -0.904071 129 10 21098 YNL044W spliced yes 40 17 31 58.482126 287.056285 172.7692055 2.237466336 0.283813 129 11 21871 copy of SH18601 no 549 27.081683 386.109269 206.595476 2.315120807 -0.66887 129 12 7824 snoRNA cluster1 intergenic no 1574 916 937 32.736688 300.298932 166.51781 2.221460691 0.027798 129 13 1854 Leu9 LeuTAG_ii tRNA yes 301 11 24 833.378539 949.415452 891.3969955 2.950071166 0.328784 129 14 538 Cys1 CysGCA 5_flank/tRNA no 272 31.264562 321.967319 176.6159405 2.247029898 -0.160432 129 15 13907 MT_COB bi3 no 7308 2791 2813 29.560561 367.269095 198.414828 2.297574125 -0.508975 129 16 15435 YBL072C intron no 408 261 280 33.45847 295.289751 164.3741105 2.215833416 0.081402 129 17 21186 YOL047C spliced yes 40 21 36 31.634779 251.346101 141.49044 2.150727097 0.272514 129 18 1930 Lys1 LysCTT_i 3_flank no 272 37.377279 291.200175 164.288727 2.215607764 0.161728 129 19 2449 Phe5 PheGAA_v tRNA yes 291 16 28 56.611978 317.89356 187.252769 2.272428249 0.010028 129 20 7592 snR189 snR189 yes 389 31 48 46.324351 354.11104 200.2176955 2.301502458 -0.328785 129 21 3847 RNaseP RNaseP yes 569 201 218 32.248757 280.193087 156.220922 2.193739197 0.139709 129 22 14215 MT_ATP9 ATP9 yes 431 121 138 596.854829 1122.255649 859.555239 2.934273792 -0.357469 129 23 8560 snR19 / U1 RNA U1 yes 868 296 313 31.215548 287.71391 159.464729 2.202664639 0.056938 129 24 10992 "rRNA(18S,5.8S,25S)" 18S yes 7956 1846 1866 1931.747607 5806.394225 3869.070916 3.58760669 -1.502451 129 25 4986 snR10 5_flank no 445 32.131003 282.571782 157.3513925 2.196870591 0.120325 129 26 15936 YDL115C intron no 189 81 98 32.439914 286.496457 159.4681855 2.202674053 0.10492 129 27 11750 "rRNA(18S,5.8S,25S)" 25S yes 7956 5636 5649 79.593103 335.871065 207.732084 2.317503578 0.015433 129 28 7430 snR69 snR69 yes 301 51 70 30.556303 288.853591 159.704947 2.203318369 0.02737 129 29 18019 YLR306W exon/intron no 234 41 60 30.466317 336.901679 183.683998 2.264071324 -0.283194 129 30 11493 "rRNA(18S,5.8S,25S)" 25S yes 7956 4351 4368 1267.854112 3326.090684 2296.972398 3.361155776 -1.131221 129 31 8593 snR19 / U1 RNA U1 yes 868 461 473 80.45245 314.328492 197.390471 2.295326183 0.179576 129 32 5092 snR11 snR11 yes 458 61 79 31.889628 291.350825 161.6202265 2.208495711 0.056119 129 33 15623 YBR181C intron no 452 241 260 31.674813 321.41574 176.5452765 2.246856102 -0.150797 129 34 10493 RUF8 RUF8 yes 1151 391 408 35.515334 304.348394 169.931864 2.230274821 0.031431 129 35 17939 YLR093C intron/exon no 241 181 200 29.398946 300.593675 164.9963105 2.217474233 -0.086301 129 36 7364 snR68 snR68 yes 336 41 53 118.821126 412.448651 265.6348885 2.424285115 -0.189417 129 37 16340 YDR500C intron no 439 81 99 35.397209 332.926836 184.1620225 2.265200076 -0.208573 129 38 16848 YGL183C 5_exon no 183 1 15 67.81933 333.035691 200.4275105 2.301957332 -0.039363 129 39 18193 YML024W intron no 498 161 177 37.681787 285.042735 161.362261 2.207801971 0.217905 129 40 20310 YER007C-A spliced yes 40 5 24 29.746006 303.796089 166.7710475 2.222120657 -0.093557 129 41 7797 snoRNA cluster1 snR75 yes 1574 781 800 33.870282 290.464436 162.167359 2.209963444 0.124651 129 42 21036 YMR125W spliced yes 40 17 32 50.16014 350.164651 200.1623955 2.30138249 -0.276167 129 43 18425 YMR142C 5_exon no 502 1 20 31.782844 343.563087 187.6729655 2.273401717 -0.314065 129 44 20112 YDL064W spliced yes 40 21 40 81.220851 400.593977 240.907414 2.381850166 -0.382806 129 45 20283 YDR471W spliced yes 40 1 18 38.431028 344.662195 191.5466115 2.282274474 -0.295578 129 46 6959 snR58 3_flank no 296 31.169456 292.242432 161.705944 2.208725984 0.026641 129 47 14506 MT_21S 21S_rRNA3 yes 4639 1801 1818 32.869497 290.086223 161.47786 2.208112985 0.095731 129 48 21293 YPL175W spliced yes 40 17 31 48.266856 296.815486 172.541171 2.236892741 0.146825 129 49 2444 Phe5 PheGAA_v 5_flank/tRNA no 291 34.28278 346.661848 190.472314 2.279831858 -0.324451 129 50 2103 Met1 MetCAT_i 5_flank no 273 34.054162 289.72796 161.891061 2.209222869 0.134979 129 51 15917 YDL083C intron no 532 421 442 31.956405 276.570553 154.263479 2.188263121 0.154159 129 52 21701 copy of SH10876 no 7956 273.053059 471.007567 372.030313 2.570578328 0.270601 129 53 11644 "rRNA(18S,5.8S,25S)" 25S yes 7956 5106 5119 15954.21878 9888.465206 12921.34199 4.111307621 0.188688 129 54 11512 "rRNA(18S,5.8S,25S)" 25S yes 7956 4446 4461 272.612846 893.46836 583.040603 2.7656988 -0.892328 129 55 3438 Trp1 TrpCCA tRNA yes 306 22 36 63.091543 291.916738 177.5041405 2.249208488 0.262966 129 56 16284 YDR447C intron/exon no 414 361 378 46.097265 351.028776 198.5630205 2.297898371 -0.307438 129 57 438 Asp1 AspGTC_i tRNA yes 271 11 27 109.386062 391.920732 250.653397 2.399073595 -0.13953 129 58 1380 Leu1 LeuCAA_i 5_flank no 315 29.333295 319.494029 174.413662 2.241580501 -0.200908 129 59 1621 Leu5 LeuCAA_v 5_flank no 315 29.703242 276.585278 153.14426 2.185100724 0.047205 129 60 2703 Pro4 ProTGG_iii 3_flank no 302 32.047379 292.009097 162.028238 2.209590709 0.057117 129 61 15814 YDL061C intron no 509 421 442 30.236322 282.249264 156.242793 2.193799994 0.047849 129 62 4395 telomerase RNA telomerase yes 1501 1011 1031 28.319159 299.235583 163.777371 2.214253895 -0.131752 129 63 20659 YIL018W spliced yes 40 21 38 32.507724 296.443821 164.4757725 2.216101935 0.044258 129 64 11655 "rRNA(18S,5.8S,25S)" 25S yes 7956 5161 5177 12993.65437 16932.11262 14962.8835 4.175015294 -0.956935 129 65 9840 RUF5-1 RUF5-1 yes 975 6 27 30.33113 306.532627 168.4318785 2.226424292 -0.089727 129 66 7271 snR65 3_flank no 300 32.193753 272.387339 152.290546 2.182672944 0.189947 129 67 3403 Thr4 ThrTGT_ii 3_flank no 272 38.002288 295.528375 166.7653315 2.222105771 0.130848 129 68 11293 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3351 3367 64.865419 311.313313 188.089366 2.274364243 0.110202 129 69 389 Asn1 AsnGTT tRNA yes 274 25 40 33.118283 284.1171 158.6176915 2.200351625 0.141886 129 70 20740 YJL191W spliced yes 40 17 33 36.598649 296.277826 166.4382375 2.221253108 0.11029 129 71 3016 Ser2 SerAGA_ii tRNA yes 282 41 e21 32.294676 279.919354 156.107015 2.193422419 0.142995 129 72 15549 YBR078W intron no 430 341 357 30.083468 296.248805 163.1661365 2.21263003 -0.035459 129 73 8035 snoRNA cluster 2 snR55 yes 739 411 427 37.547349 287.06113 162.3042395 2.210329864 0.198987 129 74 13860 MT_COB bi2 no 7308 2086 2105 31.807752 282.148281 156.9780165 2.195838837 0.112528 129 75 4377 telomerase RNA telomerase yes 1501 921 937 35.774808 296.808928 166.291868 2.220871012 0.096437 129 76 8756 LSR1 / U2 RNA U2 yes 1375 421 438 38.029961 322.380173 180.205067 2.255766998 -0.112078 129 77 15140 MT_Thr1 5_flank no 272 31 59 30.684199 331.059332 180.8717655 2.257370778 -0.237011 129 78 16226 YDR381W intron no 866 421 440 35.073314 321.388034 178.230674 2.250982449 -0.110855 129 79 2785 Pro6 ProTGG_v tRNA yes 302 16 33 35.546218 275.049824 155.298021 2.191165921 0.275479 129 80 3647 Val2 ValAAC_ii 5_flank no 274 27.82839 281.045583 154.4369865 2.188751319 -0.075403 129 81 1196 Ile1 IleAAT 5_flank no 274 31.07878 282.942965 157.0108725 2.195929727 0.083139 129 82 2227 Phe1 PheGAA_i tRNA yes 292 11 25 88.628817 335.732865 212.180841 2.326706166 0.074492 129 83 14914 MT_Tyr tRNA yes 284 106 123 34.165599 315.592457 174.879028 2.242737731 -0.074268 129 84 11412 "rRNA(18S,5.8S,25S)" 25S yes 7956 3946 3961 151.195929 380.122455 265.659192 2.424324847 0.169688 129 85 16424 YER074W exon/intron no 566 41 58 31.828075 304.279802 168.0539385 2.225448695 -0.025841 129 86 5716 snR34 snR34 yes 750 501 518 35.745993 321.592776 178.6693845 2.252050141 -0.1109 129 87 10592 RUF8 RUF8 yes 1151 886 902 38.71585 290.912598 164.814224 2.21699469 0.176531 129 88 13822 MT_COB bi2 no 7308 1516 1538 27.644582 310.174473 168.9095275 2.227654147 -0.217022 129 89 11838 "rRNA(18S,5.8S,25S)" 25S yes 7956 6076 6093 5154.918676 9186.42581 7170.672243 3.855559872 -1.066218 129 90 14433 MT_21S 21S_rRNA3 yes 4639 706 723 686.478218 649.955633 668.2169255 2.824917472 0.730069 129 91 12667 MT_15S 3_flank no 1848 1756 1782 31.757947 303.837146 167.7975465 2.224785606 -0.025464 129 92 3901 RNase MRP 5_flank no 540 39.714556 340.202397 189.9584765 2.278658678 -0.255175 129 93 8826 LSR1 / U2 RNA U2 yes 1375 771 791 29.440162 275.195359 152.3177605 2.182750546 0.04009 129 94 16696 YGL031C intron no 556 61 82 30.202045 326.79901 178.5005275 2.251639504 -0.212054 129 95 4738 snR4 3_flank no 386 66.708891 293.679053 180.193972 2.255740259 0.267646 129 96 6797 snR50 3_flank no 290 28.888282 297.82846 163.358371 2.213141394 -0.094559 129 97 21039 YMR133W spliced yes 40 5 22 28.892711 332.957986 180.9253485 2.257499418 -0.292711 129 98 8308 snoRNA cluster4 intergenic no 638 326 345 29.027225 324.214454 176.6208395 2.247041945 -0.238865 129 99 2633 Pro3 ProTGG_ii 3_flank no 303 27.287549 281.330637 154.309093 2.188391519 -0.107956 129 100 5259 snR30 snR30 yes 801 146 158 33.615949 303.015091 168.31552 2.226124163 0.019523 129 101 9566 RUF3 RUF3 yes 631 216 232 35.043559 268.357237 151.700398 2.18098672 0.305962 129 102 5554 snR33 snR33 yes 383 56 74 30.29793 347.985139 189.1415345 2.276786908 -0.365482 129 103 16231 YDR381W intron no 866 521 540 34.805266 325.63099 180.218128 2.255798474 -0.148202 129 104 17452 YIL148W intron no 534 141 160 33.005038 316.701204 174.853121 2.242673389 -0.097245 130 2 21514 copy of SH3109 no 301 28.487191 310.468413 169.477802 2.229112823 -0.17871 130 3 19080 YOR293W intron no 537 361 377 32.119823 279.686582 155.9032025 2.192855036 0.138857 130 4 14085 MT_COB bi4 no 7308 5461 5483 29.901084 304.13405 167.017567 2.222762153 -0.090175 130 5 8385 snoRNA cluster 5 5_flank/snR190 no 586 91 107 37.190536 343.304261 190.2473985 2.279318727 -0.289423 130 6 15291 MT_9S 9S yes 701 541 563 27.474807 285.742359 156.608583 2.19481556 -0.117341 130 7 158 Arg2 ArgACG_ii 5_flank no 273 34.664027 262.965935 148.814981 2.172646653 0.331956 130 8 19404 YPR063C 3_exon no 186 161 177 45.521182 350.809333 198.1652575 2.297027516 -0.308876 130 9 1844 Leu9 LeuTAG_ii 5_flank no 301 28.758444 371.481331 200.1198875 2.30129025 -0.548548 130 10 2857 Pro7 ProTGG_vi tRNA yes 303 61 73 52.569364 289.379657 170.9745105 2.232931369 0.234648 130 11 8394 snoRNA cluster 5 snR190 yes 586 136 150 43.384278 301.967707 172.6759925 2.237231961 0.084431 130 12 18367 YMR079W intron no 256 81 100 32.478563 283.764635 158.121599 2.198991197 0.123803 130 13 12446 5S rRNA NTS2 no 1420 1186 1200 68.941836 309.733583 189.3377095 2.277237119 0.146408 130 14 19445 CYC1 CYC1 yes 400 1 20 33.799606 288.485956 161.142781 2.207210854 0.135054 130 15 21658 copy of SH8993 no 690 57.524729 328.264227 192.894478 2.285319795 -0.06672 130 16 1714 Leu6 LeuGAG 3_flank no 282 31.359733 284.823638 158.0916855 2.19890903 0.080339 130 17 16104 YDR064W 5_exon no 639 1 20 54.194233 313.191225 183.692729 2.264091966 0.035653 130 18 8517 snR19 / U1 RNA U1 yes 868 81 102 29.664615 269.824831 149.744723 2.175351527 0.078135 130 19 10414 RUF8 5_flank/RUF8 no 1151 31.671563 269.11745 150.3945065 2.177231973 0.183348 130 20 3813 RNaseP RNaseP yes 569 31 47 35.699383 340.172561 187.935972 2.274009914 -0.267954 130 21 8969 snR17a / U3a U3a yes 690 131 147 30.281762 266.415999 148.3488805 2.171284273 0.127059 130 22 16671 YFR032C intron no 431 301 313 42.450111 301.15672 171.8034155 2.235031793 0.088708 130 23 3895 RNaseP 3_flank no 569 31.188282 322.393882 176.791082 2.247460354 -0.164715 130 24 3650 Val2 ValAAC_ii 5_flank/tRNA no 274 30.670467 293.556181 162.113324 2.209818711 0.001531 130 25 9475 RUF2 RUF2 yes 468 216 233 32.100373 310.224607 171.16249 2.233408596 -0.05769 130 26 3507 Tyr1 TyrGTA_i tRNA yes 289 60 72 67.697664 369.791307 218.7444855 2.339937113 -0.294222 130 27 12061 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7191 7206 56.510062 290.28586 173.397961 2.239043986 0.244672 130 28 6885 snR56 snR56 yes 288 56 73 30.503253 297.382146 163.9426995 2.214692082 -0.028019 130 29 12678 MT_Trp 5_flank/tRNA no 274 91 113 30.399522 308.288848 169.344185 2.228770288 -0.097894 130 30 241 Arg3 ArgCCG tRNA/3_flank no 272 72.627708 324.899659 198.7636835 2.298337037 0.050443 130 31 9453 RUF2 RUF2 yes 468 106 121 36.102767 278.468702 157.2857345 2.196689335 0.257844 130 32 14136 MT_COB intronic no 7308 6226 6245 32.784024 317.311664 175.047844 2.243156766 -0.104786 130 33 793 Glu1 GluCTC 5_flank no 272 45.639804 303.908271 174.7740375 2.242476919 0.074078 130 34 3560 Tyr2 TyrGTA_ii tRNA yes 289 55 67 37.358645 282.826212 160.0924285 2.204370793 0.233631 130 35 8459 snoRNA cluster 5 snR128 yes 586 461 476 43.206229 298.823479 171.014854 2.233033834 0.112556 130 36 9007 snR17a / U3a U3a yes 690 321 338 33.193285 297.092331 165.142808 2.217859665 0.062028 130 37 19636 RNA14 2.2 RNA14 2.2 yes 401 221 237 68.270773 341.311404 204.7910885 2.311311054 -0.097115 130 38 12944 MT_COX1 ai2 no 13084 3361 3383 29.347761 297.371502 163.3596315 2.213144745 -0.068278 130 39 20595 YHR039C-A spliced yes 40 17 34 39.482398 293.902069 166.6922335 2.221915366 0.149755 130 40 4432 telomerase RNA telomerase yes 1501 1196 1210 29.573637 277.195347 153.384492 2.185781452 0.037476 130 41 1907 Lys1 LysCTT_i 5_flank/tRNA no 272 31.654716 298.066166 164.860441 2.217116457 0.006443 130 42 14342 MT_VAR1 VAR1 yes 1467 1336 1360 29.651912 277.782136 153.717024 2.186721968 0.038768 130 43 13381 MT_COX1 exon5b yes 13084 9916 9933 31.601322 312.31851 171.959916 2.235427224 -0.081317 130 44 18166 YLR448W intron no 484 101 115 32.46867 291.01807 161.74337 2.208826488 0.077014 130 45 10489 RUF8 RUF8 yes 1151 371 389 31.276037 285.790814 158.5334255 2.200120844 0.071307 130 46 2175 Met2 MetCAT_ii tRNA yes 272 6 18 74.883858 308.860148 191.872003 2.283011609 0.188032 130 47 3967 RNase MRP RNaseMRP yes 540 251 270 30.813158 294.941296 162.877227 2.211860367 -0.002289 130 48 15278 MT_9S 9S yes 701 346 370 28.649128 329.246963 178.9480455 2.252726959 -0.280915 130 49 3124 Ser4 SerGCT tRNA yes 301 26 i4 65.500745 298.507009 182.003877 2.260080639 0.219893 130 50 20637 YHR141C spliced yes 40 13 30 39.923199 324.074975 181.999087 2.260069209 -0.121214 130 51 14707 MT_Thr2 3_flank no 276 181 209 26.342238 323.411177 174.8767075 2.242731968 -0.347648 130 52 14261 MT_VAR1 5_flank no 1467 121 147 28.226389 315.158329 171.692359 2.234750968 -0.215919 130 53 16153 YDR092W 3_exon no 368 341 353 47.538644 313.570822 180.554733 2.256608877 -0.001995 130 54 1124 Gly4 GlyTCC 3_flank no 272 32.235671 300.641704 166.4386875 2.221254282 0.009593 130 55 4253 telomerase RNA telomerase yes 1501 301 319 30.528861 299.897555 165.213208 2.218044764 -0.042651 130 56 16602 YFL034C 3_exon no 421 401 417 30.839105 273.659716 152.2494105 2.18255562 0.119674 130 57 16972 YGR034W intron no 454 221 236 41.157457 323.692802 182.4251295 2.261084663 -0.113641 130 58 583 Gln1 GlnCTG 5_flank no 272 33.598809 274.299157 153.948983 2.187376824 0.221676 130 59 7780 snoRNA cluster1 intergenic no 1574 696 715 31.938102 305.037456 168.487779 2.226568405 -0.026816 130 60 9005 snR17a / U3a U3a yes 690 311 323 48.676216 301.080051 174.8781335 2.242735509 0.111118 130 61 18165 YLR448W intron no 484 81 97 51.062778 356.3847 203.723739 2.309041638 -0.316453 130 62 18694 YNL112W 3_exon no 1102 1061 1078 30.485528 279.722274 155.103901 2.190622721 0.072578 130 63 4216 telomerase RNA telomerase yes 1501 116 131 56.578475 318.227365 187.40292 2.272776354 0.007135 130 64 9200 snR7 U5 RNA 3_flank no 415 32.589211 294.376142 163.4826765 2.213471739 0.05976 130 65 20457 YGL178W spliced yes 40 9 28 32.486061 293.428235 162.957148 2.212073415 0.062387 130 66 697 Gln3 GlnTTG_ii tRNA yes 272 16 32 34.342574 315.136066 174.73932 2.242390641 -0.068552 130 67 4197 telomerase RNA telomerase yes 1501 21 38 29.961103 321.903771 175.932437 2.245345919 -0.19263 130 68 13944 MT_COB bi3 no 7308 3346 3370 29.612516 313.606443 171.6094795 2.234541274 -0.15677 130 69 17063 YGR214W intron no 555 401 422 27.241434 298.256693 162.7490635 2.211518498 -0.187674 130 70 5076 snR11 5_flank no 458 51.439112 331.287882 191.363497 2.281859099 -0.125243 130 71 19058 YOR234C intron no 627 541 560 26.550669 300.215232 163.3829505 2.213206735 -0.236297 130 72 13107 MT_COX1 ai3 no 13084 5806 5827 28.206686 313.908053 171.0573695 2.233141789 -0.209329 130 73 517 Asp2 AspGTC_ii 3_flank no 272 68.30227 316.271735 192.2870025 2.283949929 0.090984 130 74 9089 snR14 / U4 RNA U4 yes 360 61 82 27.985252 330.524195 179.2547235 2.253470608 -0.312526 130 75 15610 YBR119W 3_exon no 189 161 173 70.43647 321.837313 196.1368915 2.292559288 0.060862 130 76 16064 YDR005C 5_exon no 180 1 17 51.398879 288.580633 169.989756 2.230422751 0.236417 130 77 18991 YOR122C 5_exon no 309 1 19 59.79685 343.643149 201.7199995 2.304748958 -0.168661 130 78 12094 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7356 7383 36.815128 334.606671 185.7108995 2.268837394 -0.219049 130 79 20863 YLR093C spliced yes 40 5 24 31.314713 388.789671 210.052192 2.322327218 -0.653169 130 80 3336 Thr3 ThrTGT_i tRNA yes 272 26 43 29.65179 329.307506 179.479648 2.254015209 -0.245333 130 81 21308 YPL241C spliced yes 40 1 18 30.891303 283.05886 156.9750815 2.195830717 0.076067 130 82 6376 snR43 snR43 yes 409 121 136 34.047924 279.70416 156.876042 2.195556623 0.199615 130 83 14868 MT_Ser2; Arg2 3_flank no 360 286 314 27.922369 302.935478 165.4289235 2.218611444 -0.17004 130 84 14724 MT_Cys; His intergenic no 456 181 207 29.847669 302.341887 166.094778 2.220355978 -0.08116 130 85 1829 Leu8 LeuTAG_i 3_flank no 301 43.874419 346.50664 195.1905295 2.290458742 -0.285348 130 86 325 Arg5 ArgTCT 5_flank no 272 39.657667 334.721666 187.1896665 2.272281871 -0.210829 130 87 14006 MT_COB intronic no 7308 4276 4302 33.525665 360.123735 196.8247 2.294079598 -0.432938 130 88 19394 YPR043W 3_exon no 503 461 477 73.916311 358.781687 216.348999 2.33515489 -0.178958 130 89 18361 YMR033W 3_exon no 186 141 157 51.603788 303.971482 177.787635 2.249901553 0.100232 130 90 19752 Negative Control no 60 NA #VALUE! 35.465429 317.692775 176.579102 2.246939304 -0.077528 130 91 4196 telomerase RNA telomerase yes 1501 16 32 36.381661 307.973794 172.1777275 2.235976971 0.011613 130 92 18217 YML025C intron/exon no 199 141 160 33.228803 306.056911 169.642857 2.229535578 -0.009958 130 93 19296 YPL175W 3_exon no 200 181 196 44.922592 303.925059 174.4238255 2.241605807 0.071671 130 94 8469 snoRNA cluster 5 3_flank no 586 511 528 38.722916 313.871144 176.29703 2.246244996 -0.03569 130 95 20077 YCR031C spliced yes 40 9 23 54.297454 285.521572 169.909513 2.230217695 0.278023 130 96 8021 snoRNA cluster 2 snR55 yes 739 341 357 86.533995 307.215875 196.874935 2.294190428 0.269936 130 97 16987 YGR118W intron no 420 81 97 32.748069 271.239559 151.993814 2.181825913 0.215548 130 98 17055 YGR214W intron no 555 241 259 31.004127 313.212223 172.108175 2.235801499 -0.1065 130 99 2490 Pro1 ProAGG 5_flank no 272 62.393028 324.052483 193.2227555 2.286058271 -0.005074 130 100 694 Gln3 GlnTTG_ii tRNA yes 272 1 17 180.456082 364.043763 272.2499225 2.434967765 0.40403 130 101 3572 Tyr2 TyrGTA_ii 3_flank no 289 36.121527 330.738174 183.4298505 2.263470012 -0.188295 130 102 14121 MT_COB intronic no 7308 6001 6022 30.320087 379.65153 204.9858085 2.311723795 -0.589659 130 103 6324 snR42 3_flank no 551 32.700933 271.914581 152.307757 2.182722022 0.209468 130 104 21927 copy of SH20402 no 40 35.088381 327.193201 181.140791 2.25801626 -0.160835 131 2 13922 MT_COB bi3 no 7308 3016 3038 28.518964 305.359165 166.9390645 2.222557975 -0.147803 131 3 684 Gln3 GlnTTG_ii 5_flank no 272 36.062178 280.109172 158.085675 2.198892518 0.242863 131 4 8524 snR19 / U1 RNA U1 yes 868 116 132 146.621578 431.435791 289.0286845 2.460940946 -0.118025 131 5 16043 YDL191W intron no 591 321 337 33.485978 305.669558 169.577768 2.229368915 -0.003636 131 6 19048 YOR234C intron no 627 341 355 72.966824 300.229534 186.598179 2.270907401 0.247054 131 7 10717 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 471 488 32.89747 233.681442 133.289456 2.124795795 0.429957 131 8 19805 Negative Control no 60 NA #VALUE! 34.502101 241.630113 138.066107 2.140087079 0.45982 131 9 19486 YPT1 YPT1 yes 402 21 36 237.562832 627.448077 432.5054545 2.635991589 -0.409371 131 10 4242 telomerase RNA telomerase yes 1501 246 262 41.52858 335.176683 188.3526315 2.274971692 -0.20799 131 11 2387 Phe4 PheGAA_iv 5_flank/tRNA no 291 35.996096 274.667941 155.3320185 2.191260986 0.290582 131 12 1458 Leu2 LeuCAA_ii intron/tRNA no 314 i22 43 56.348351 337.906222 197.1272865 2.294746744 -0.147293 131 13 13377 MT_COX1 intronic no 13084 9856 9877 30.7033 298.38237 164.542835 2.216278976 -0.027376 131 14 20580 YHR016C spliced yes 40 9 24 130.190444 344.23895 237.214697 2.375141593 0.266483 131 15 6141 snR39B snR39B yes 296 46 62 29.203898 364.711463 196.9576805 2.294372921 -0.496731 131 16 15121 MT_Phe 5_flank no 265 1 27 29.351477 332.439132 180.8953045 2.257427294 -0.273389 131 17 9071 snR14 / U4 RNA 5_flank no 360 33.217461 231.129203 132.173332 2.121143838 0.45934 131 18 13402 MT_COX1 intronic no 13084 10231 10248 129.743702 612.53005 371.136876 2.569534108 -0.932364 131 19 15966 YDL130W intron no 401 301 318 30.633583 259.385099 145.009341 2.161395979 0.180621 131 20 3942 RNase MRP RNaseMRP yes 540 126 150 27.992499 318.065319 173.028909 2.238118669 -0.241512 131 21 3393 Thr4 ThrTGT_ii tRNA yes 272 51 67 41.762634 315.165469 178.4640515 2.251550748 -0.038332 131 22 3928 RNase MRP RNaseMRP yes 540 56 75 32.568218 293.687393 163.1278055 2.212527994 0.0634 131 23 15555 YBR082C exon/intron no 195 41 58 31.10372 296.003411 163.5535655 2.213660016 0.000893 131 24 4732 snR4 3_flank no 386 29.585308 289.852909 159.7191085 2.203356877 -0.021369 131 25 18577 YNL044W intron no 179 61 80 29.986453 308.803859 169.395156 2.228900987 -0.115253 131 26 5602 snR34 5_flank no 750 34.39322 290.025854 162.209537 2.210076385 0.137263 131 27 15264 MT_9S 9S yes 701 136 164 28.374681 307.559692 167.9671865 2.225224448 -0.165512 131 28 8797 LSR1 / U2 RNA U2 yes 1375 626 643 30.462171 304.837868 167.6500195 2.224403608 -0.075018 131 29 10204 RUF6 RUF6 yes 1251 866 890 28.310741 294.096307 161.203524 2.207374531 -0.109145 131 30 6945 snR58 snR58/3_flank no 296 32.246904 283.86483 158.055867 2.198810621 0.115679 131 31 5953 snR36 snR36 yes 555 221 237 52.473534 322.551032 187.512283 2.273029721 -0.05015 131 32 842 Glu2 GluTTC_i 5_flank no 272 35.811082 308.850367 172.3307245 2.236362714 -0.001424 131 33 11865 "rRNA(18S,5.8S,25S)" 25S yes 7956 6211 6226 33.541493 272.294463 152.917978 2.184458547 0.233399 131 34 997 Gly2 GlyCCC_ii 5_flank no 272 38.332708 313.45444 175.893574 2.245249973 -0.032903 131 35 4849 snR8 snR8 yes 390 26 42 49.148597 308.207627 178.678112 2.252071355 0.051726 131 36 4181 telomerase RNA 5_flank no 1501 29.16956 300.677177 164.9233685 2.217282197 -0.094992 131 37 6486 snR46 5_flank no 397 33.142286 297.892788 165.517537 2.218844015 0.055468 131 38 14260 MT_VAR1 5_flank no 1467 106 132 31.227894 304.742219 167.9850565 2.22527065 -0.048516 131 39 2663 Pro4 ProTGG_iii 5_flank no 302 33.318035 283.677206 158.4976205 2.200022747 0.151018 131 40 3055 Ser3 SerCGA 5_flank no 301 29.419799 308.944935 169.182367 2.228355097 -0.136015 131 41 8030 snoRNA cluster 2 snR55 yes 739 386 402 39.498261 303.112427 171.305344 2.233770911 0.063574 131 42 18201 YML024W intron no 498 321 338 55.638439 311.863748 183.7510935 2.264229932 0.054453 131 43 21866 copy of SH19501 no 402 33.421292 265.867465 149.6443785 2.175060407 0.273629 131 44 11219 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2981 3004 29.315002 281.402899 155.3589505 2.191336279 0.003767 131 45 3304 Thr2 ThrCGT 3_flank no 272 35.109609 318.037775 176.573692 2.246925998 -0.082058 131 46 9330 RUF1 RUF1 yes 750 226 242 370.358093 537.446033 453.902063 2.656962157 0.347227 131 47 12042 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7096 7112 764.117783 1106.888926 935.5033545 2.971045349 -0.031989 131 48 12080 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7286 7304 30.588946 274.647517 152.6182315 2.183606417 0.102221 131 49 1139 His1 HisGTG 5_flank no 272 32.400407 362.397632 197.3990195 2.295344991 -0.453642 131 50 11799 "rRNA(18S,5.8S,25S)" 25S yes 7956 5881 5896 22659.7404 14563.22097 18611.48068 4.269780926 -0.026362 131 51 15878 YDL082W intron no 465 101 117 32.296758 318.363394 175.330076 2.243856421 -0.119164 131 52 943 Gly1 GlyCCC_i 5_flank no 272 38.152412 301.427161 169.7897865 2.229911562 0.075987 131 53 3321 Thr3 ThrTGT_i 5_flank no 272 30.497709 283.49534 156.9965245 2.195890038 0.055357 131 54 21435 telomeric; WTP_217 no 148.911481 463.64471 306.2780955 2.486115938 -0.251628 131 55 19995 YBR048W spliced yes 40 9 25 36.810665 283.451921 160.131293 2.20447621 0.222051 131 56 12063 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7201 7219 29.216473 320.843107 175.02979 2.243111972 -0.212833 131 57 3281 Thr2 ThrCGT tRNA yes 272 6 22 44.612851 349.603069 197.10796 2.294704163 -0.304734 131 58 17726 YKL156W intron no 450 101 119 33.893148 319.876824 176.884986 2.247690972 -0.110908 131 59 4403 telomerase RNA telomerase yes 1501 1051 1068 30.118209 281.774895 155.946552 2.192975777 0.044007 131 60 1250 Ile2 IleTAT_i 5_flank no 333 32.399906 293.419146 162.909526 2.21194648 0.059671 131 61 13486 MT_COX1 intronic no 13084 11491 11515 28.432114 325.612093 177.0221035 2.248027497 -0.268416 131 62 17740 YKL156W intron no 450 381 398 32.673206 283.921519 158.2973625 2.199473679 0.129025 131 63 15492 YBL092W intron no 433 221 235 59.914281 308.481223 184.197752 2.265284326 0.104971 131 64 16183 YDR367W exon/intron no 201 41 58 32.687504 293.743582 163.215543 2.212761514 0.066865 131 65 16694 YGL031C 5_exon no 556 21 37 140.691763 339.328759 240.010261 2.380229809 0.354395 131 66 16467 YER093C 3_exon no 175 141 160 30.312443 307.427185 168.869814 2.227552025 -0.095736 131 67 4154 SRP SRP/3_flank no 875 34.104523 278.178175 156.141349 2.193517927 0.211422 131 68 1968 Lys2 LysCTT_ii tRNA yes 273 41 57 5429.697581 4142.691756 4786.194669 3.679990359 0.324404 131 69 8081 snoRNA cluster 2 3_flank no 739 641 660 29.271023 286.121472 157.6962475 2.197821359 -0.020709 131 70 21288 YPL143W spliced yes 40 25 40 58.464558 304.933348 181.698953 2.259352425 0.127331 131 71 11082 "rRNA(18S,5.8S,25S)" 18S yes 7956 2296 2313 13547.17382 20073.45397 16810.3139 4.225575823 -1.188957 131 72 9960 RUF5-1 RUF5-1 yes 975 606 623 28.269553 283.925399 156.097476 2.193395881 -0.06454 131 73 18127 YLR388W intron no 258 181 197 30.001717 281.840799 155.921258 2.19290533 0.037675 131 74 19305 YPL198W intron no 509 161 180 28.027729 270.378862 149.2032955 2.173778416 -0.016293 131 75 18314 YML073C 3_exon no 515 481 493 58.746543 310.093723 184.420133 2.265808331 0.085318 131 76 9280 RUF1 5_flank no 750 41.680056 336.953033 189.3165445 2.277188569 -0.22197 131 77 3772 Val4 ValTAC 3_flank no 274 30.422459 296.70525 163.5638545 2.213687336 -0.026593 131 78 15409 YBL059C intron no 185 81 96 34.688099 282.956446 158.8222725 2.200911406 0.197782 131 79 4385 telomerase RNA telomerase yes 1501 961 977 43.062425 340.343695 191.70306 2.282629045 -0.242563 131 80 10143 RUF6 RUF6 yes 1251 561 578 63.743384 436.533096 250.13824 2.39818009 -0.719283 131 81 5320 snR30 snR30 yes 801 451 468 33.76642 305.101678 169.434049 2.229000689 0.004413 131 82 18508 YMR194W 3_exon no 563 521 540 27.833929 311.10809 169.4710095 2.229095416 -0.210418 131 83 6943 snR58 snR58 yes 296 76 93 29.875576 284.960132 157.417854 2.197053988 0.016471 131 84 2493 Pro1 ProAGG 5_flank no 272 52.172567 296.186998 174.1797825 2.240997744 0.171408 131 85 8476 snoRNA cluster 5 3_flank no 586 546 564 31.709995 287.132695 159.421345 2.202546469 0.077072 131 86 11726 "rRNA(18S,5.8S,25S)" 25S yes 7956 5516 5529 41.656756 271.160829 156.4087925 2.194261163 0.37967 131 87 7448 snR69 3_flank no 301 31.481404 284.812315 158.1468595 2.199060572 0.084456 131 88 15361 YBL026W 3_exon no 228 201 218 35.396604 294.273587 164.8350955 2.217049684 0.113237 131 89 14560 MT_21S 21S_rRNA3 yes 4639 2611 2625 39.301688 279.245794 159.273741 2.202144181 0.28611 131 90 21858 copy of SH17803 no 176 35.187143 305.522425 170.354784 2.231354334 0.018072 131 91 9509 RUF3 5_flank no 631 30.077286 291.974788 161.026037 2.206896105 -0.008918 131 92 12362 5S rRNA NTS2 no 1420 766 784 28.91717 281.750929 155.3340495 2.191266664 -0.019109 131 93 10779 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 781 801 29.713482 301.299434 165.506458 2.218814944 -0.079506 131 94 2879 Pro8 ProTGG_vii 5_flank no 305 30.541268 283.033311 156.7872895 2.195310852 0.059747 131 95 6979 snR60 5_flank no 304 41.179733 312.969646 177.0746895 2.248156489 -0.021157 131 96 10864 "rRNA(18S,5.8S,25S)" 18S yes 7956 1206 1223 39.315809 309.285362 174.3005855 2.241298846 0.006821 131 97 20624 YHR101C spliced yes 40 13 29 38.575745 271.871324 155.2235345 2.190957568 0.344532 131 98 15551 YBR078W intron/exon no 430 381 398 29.050411 254.123973 141.587192 2.151023969 0.116302 131 99 4195 telomerase RNA telomerase yes 1501 11 27 92.329778 313.566016 202.947897 2.307384555 0.25678 131 100 4226 telomerase RNA telomerase yes 1501 166 182 33.745308 318.70542 176.225364 2.246068416 -0.103651 131 101 2775 Pro6 ProTGG_v 5_flank no 302 32.073403 314.230484 173.1519435 2.238427371 -0.089745 131 102 13398 MT_COX1 intronic no 13084 10171 10195 28.259808 308.021854 168.140831 2.225673189 -0.173548 131 103 948 Gly1 GlyCCC_i 5_flank/tRNA no 272 30.574262 288.647004 159.610633 2.20306182 0.029301 131 104 5367 snR31 5_flank no 425 40.326095 304.974846 172.6504705 2.237167766 0.048353 132 2 4564 U3b (snR17b) U3b yes 662 376 388 36.559708 293.330674 164.945191 2.217339658 0.134556 132 3 4383 telomerase RNA telomerase yes 1501 951 968 44.112934 336.990225 190.5515795 2.280012553 -0.210504 132 4 3203 Ser5 SerTGA 3_flank no 282 53.450796 351.355449 202.4031225 2.306217208 -0.264821 132 5 18265 YML056C intron no 508 181 197 43.316448 302.11616 172.716304 2.237333336 0.08286 132 6 8529 snR19 / U1 RNA U1 yes 868 141 156 29.660299 238.138374 133.8993365 2.126778425 0.225553 132 7 7101 snR63 snR63 yes 455 11 30 31.292445 259.990861 145.641653 2.163285599 0.210579 132 8 519 Asp2 AspGTC_ii 3_flank no 272 31.057139 237.512273 134.284706 2.128026553 0.309935 132 9 17580 YJL191W intron no 508 121 133 38.266778 321.935257 180.1010175 2.255516166 -0.107652 132 10 15609 YBR119W intron/exon no 189 141 160 28.885359 316.184507 172.534933 2.23687704 -0.197806 132 11 19372 YPR043W 5_exon no 503 21 38 673.441806 873.86999 773.655898 2.888547841 0.207469 132 12 18174 YLR448W intron no 484 261 280 28.833736 307.773117 168.3034265 2.226092958 -0.15003 132 13 18904 YOL120C intron no 547 281 298 40.902489 314.666893 177.784691 2.249894361 -0.036954 132 14 308 Arg4 ArgCCT 3_flank no 272 36.434541 268.005271 152.219906 2.182471449 0.349025 132 15 12120 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7486 7506 27.313832 325.653487 176.4836595 2.246704501 -0.31055 132 16 20394 YFL039C spliced yes 40 17 31 48.013295 348.174044 198.0936695 2.296870597 -0.274389 132 17 13931 MT_COB bi3 no 7308 3151 3172 29.390335 308.362371 168.876353 2.227568842 -0.133587 132 18 13701 MT_Glu (and 5_flank processing site for COB) 5_flank no 368 46 74 29.479777 295.673396 162.5765865 2.211058001 -0.053396 132 19 19981 YBL091C-A spliced yes 40 5 20 48.512061 319.389293 183.950677 2.264701391 -0.04555 132 20 498 Asp2 AspGTC_ii tRNA yes 272 52 66 35.485599 312.45672 173.9711595 2.240477258 -0.033894 132 21 10729 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 531 547 35.841931 290.948892 163.3954115 2.213239856 0.146494 132 22 14963 MT_COX 2; ORF1 5_flank no 2427 46 68 28.559423 324.189304 176.3743635 2.246435459 -0.255688 132 23 4175 telomerase RNA 5_flank no 1501 32.947469 314.433827 173.690648 2.239776435 -0.080211 132 24 3867 RNaseP RNaseP yes 569 301 317 35.476904 290.12716 162.802032 2.211659821 0.149245 132 25 13991 MT_COB intronic no 7308 4051 4077 31.912247 306.822063 169.367155 2.228829192 -0.038402 132 26 18625 YNL096C intron no 445 121 142 32.247392 324.374278 178.310835 2.251177734 -0.166022 132 27 12793 MT_COX1 ai1 no 13084 1096 1117 30.382003 322.820003 176.601003 2.246993166 -0.183296 132 28 20137 YDL083C spliced yes 40 21 40 30.434416 301.546406 165.990411 2.220083 -0.055981 132 29 21376 Leu8_9 spliced yes 40 17 33 34.500277 287.155612 160.8279445 2.206361511 0.163129 132 30 5295 snR30 snR30 yes 801 326 338 105.08951 378.257942 241.673726 2.383229438 -0.08939 132 31 20587 YHR021C spliced yes 40 9 28 30.038996 321.974617 176.0068065 2.245529463 -0.190324 132 32 8312 snoRNA cluster4 intergenic no 638 346 365 31.851414 301.582696 166.717055 2.22198003 -0.008683 132 33 73 Ala2 AlaTGC tRNA yes 273 1 13 741.73942 907.090256 824.414838 2.9161458 0.26212 132 34 21297 YPL198W spliced yes 40 9 27 33.430903 310.949949 172.190426 2.236009 -0.046645 132 35 11948 "rRNA(18S,5.8S,25S)" 25S yes 7956 6626 6641 39.251188 305.537001 172.3940945 2.236522385 0.040741 132 36 7682 snoRNA cluster1 intergenic no 1574 206 225 55.112096 350.153795 202.6329455 2.306710057 -0.245235 132 37 15475 YBL091C intron no 188 61 77 37.109644 314.691692 175.900668 2.245267489 -0.04687 132 38 6259 snR42 snR42 yes 551 76 94 31.178854 281.722642 156.450748 2.194377644 0.094454 132 39 12834 MT_COX1 ai1 no 13084 1711 1733 29.245224 338.726322 183.985773 2.264784242 -0.31348 132 40 6682 snR49 5_flank no 365 31.283371 284.772179 158.027775 2.198733425 0.078126 132 41 19432 YPR132W intron no 465 361 382 31.313126 294.010919 162.6620225 2.211286168 0.020335 132 42 12165 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7711 7728 116.669566 400.767172 258.718369 2.412827265 -0.141066 132 43 20793 YKL156W spliced yes 40 9 27 29.265722 271.123847 150.1947845 2.176654852 0.050705 132 44 14802 MT_Lys; Arg1; Gly intergenic no 682 211 239 29.177528 360.623869 194.9006985 2.289813396 -0.469251 132 45 9508 RUF3 5_flank no 631 33.00645 354.304432 193.655441 2.287029704 -0.388844 132 46 8747 LSR1 / U2 RNA U2 yes 1375 376 390 64.534987 295.749144 180.1420655 2.255615138 0.238061 132 47 2719 Pro5 ProTGG_iv 5_flank no 303 50.391098 331.903587 191.1473425 2.281368264 -0.136158 132 48 18310 YML073C intron no 515 401 418 34.525548 334.42317 184.474359 2.26593601 -0.223379 132 49 19290 YPL175W intron no 200 61 76 40.294907 318.649587 179.472247 2.2539973 -0.073585 132 50 17863 YLL050C intron no 279 61 78 36.370652 271.893617 154.1321345 2.187893193 0.319957 132 51 6773 snR50 snR50 yes 290 41 58 32.518515 311.55794 172.0382275 2.235624959 -0.06293 132 52 7762 snoRNA cluster1 snR76 yes 1574 606 623 34.572855 287.775284 161.1740695 2.207295172 0.158672 132 53 12646 MT_15S 15S yes 1848 1441 1469 30.814805 310.925918 170.8703615 2.232666738 -0.099407 132 54 9598 RUF3 RUF3 yes 631 376 393 31.015234 288.338056 159.676645 2.203241399 0.046226 132 55 13874 MT_COB intronic no 7308 2296 2318 29.273822 317.827193 173.5505075 2.239425888 -0.193397 132 56 1047 Gly3 GlyGCC 5_flank no 271 33.549636 289.139043 161.3443395 2.207753734 0.123139 132 57 13458 MT_COX1 intronic no 13084 11071 11090 29.80988 317.15855 173.484215 2.239259965 -0.170571 132 58 11391 "rRNA(18S,5.8S,25S)" 25S yes 7956 3841 3859 9228.818957 22069.63996 15649.22946 4.194492959 -1.815793 132 59 7934 snoRNA cluster1 snR72/3_flank no 1574 1466 1485 36.473653 317.182425 176.828039 2.247551131 -0.070477 132 60 21775 copy of SH14039 no 7308 30.476248 324.045481 177.2608645 2.248612863 -0.187038 132 61 12961 MT_COX1 ai2 no 13084 3616 3633 30.603226 307.340151 168.9716885 2.227813944 -0.085245 132 62 6109 snR37 3_flank no 586 39.022844 280.418792 159.720818 2.203361526 0.272803 132 63 5856 snR35 snR35 yes 740 466 485 32.791685 340.004328 186.3980065 2.270441263 -0.275394 132 64 9433 RUF2 RUF2 yes 468 6 22 41.10482 293.184721 167.1447705 2.223092793 0.16026 132 65 3082 Ser3 SerCGA 3_flank no 301 30.55859 308.469698 169.514144 2.229205941 -0.093524 132 66 19409 YPR098C intron no 196 81 102 28.291945 308.59315 168.4425475 2.226451801 -0.174737 132 67 16724 YGL033W intron no 170 61 80 32.08809 299.619657 165.8538735 2.219725619 0.011071 132 68 16983 YGR118W 5_exon no 420 1 17 36.738732 305.276131 171.0074315 2.233014984 0.037087 132 69 15839 YDL075W intron no 521 221 241 31.268191 320.421419 175.844805 2.245129542 -0.148489 132 70 4877 snR8 snR8 yes 390 166 178 30.863258 281.982367 156.4228125 2.19430009 0.080996 132 71 8167 snoRNA cluster 3; snR70 yes 743 346 358 69.644608 335.323231 202.4839195 2.306390539 -0.045111 132 72 6217 snR40 3_flank no 297 28.332642 302.348176 165.340409 2.218379008 -0.144792 132 73 575 Gln1 GlnCTG 5_flank no 272 30.087756 314.543708 172.315732 2.236324929 -0.145639 132 74 6674 snR48 3_flank no 313 30.018479 297.372523 163.695501 2.214036743 -0.044688 132 75 10093 RUF6 RUF6 yes 1251 311 330 30.050006 304.032747 167.0413765 2.22282406 -0.084373 132 76 16660 YFR032C intron no 431 81 95 32.102901 307.105387 169.604144 2.229436459 -0.033882 132 77 15076 MT_COX 2; ORF1 ORF1exon1 yes 2427 1741 1765 28.477582 299.295218 163.8864 2.214542915 -0.123349 132 78 7329 snR66 3_flank no 286 42.463631 292.359306 167.4114685 2.223785206 0.171107 132 79 5488 snR32 snR32 yes 388 101 117 48.899244 357.924111 203.4116775 2.308375881 -0.340458 132 80 13572 MT_COX1 exon6 yes 13084 12781 12803 32.380038 304.283213 168.3316255 2.226165717 -0.007908 132 81 15674 YBR191W intron no 488 121 142 33.66617 359.874699 196.7704345 2.293959845 -0.430623 132 82 17256 YHR101C 5_exon no 187 1 17 39.939729 287.982822 163.9612755 2.214741288 0.207655 132 83 15778 YDL012C intron no 186 101 118 31.888765 306.123299 169.006032 2.227902205 -0.034973 132 84 2957 Ser1 SerAGA_i tRNA yes 283 16 32 70.678436 372.409778 221.544107 2.345460202 -0.290183 132 85 3990 RNase MRP 3_flank no 540 29.750785 289.981163 159.865974 2.203756038 -0.013292 132 86 14822 MT_Lys; Arg1; Gly tRNAGly yes 682 511 531 29.640504 335.728529 182.6845165 2.26170174 -0.285952 132 87 3004 Ser2 SerAGA_ii 5_flank/tRNA no 282 29.520056 319.527373 174.5237145 2.241854448 -0.194473 132 88 12914 MT_COX1 ai2 no 13084 2911 2923 39.386252 286.904287 163.1452695 2.212574486 0.216864 132 89 17968 YLR185W intron no 459 341 360 29.238681 322.572782 175.9057315 2.24527999 -0.221939 132 90 13542 MT_COX1 intronic no 13084 12331 12359 28.071293 328.78157 178.4264315 2.25145919 -0.299588 132 91 20466 YGL183C spliced yes 40 21 33 68.320113 303.4863 185.9032065 2.269286881 0.193105 132 92 14527 MT_21S 21S_rRNA3 yes 4639 2116 2135 26.686735 301.681804 164.1842695 2.215331545 -0.234844 132 93 6665 snR48 3_flank no 313 36.179495 301.804316 168.9919055 2.227865903 0.059848 132 94 9585 RUF3 RUF3 yes 631 311 332 30.265534 321.017953 175.6417435 2.244627739 -0.177 132 95 21315 YPL249C-A spliced yes 40 1 17 53.521587 317.243676 185.3826315 2.268069043 -0.001333 132 96 837 Glu2 GluTTC_i 5_flank no 272 30.438033 304.224284 167.3311585 2.223576818 -0.072136 132 97 3655 Val2 ValAAC_ii tRNA yes 274 16 30 34.621622 283.017446 158.819534 2.200903917 0.195382 132 98 21464 copy of SH1000 no 272 31.056656 268.615197 149.8359265 2.175615958 0.155372 132 99 8355 snoRNA cluster4 3_flank no 638 561 578 27.43263 273.488809 150.4607195 2.177423134 -0.067034 132 100 7127 snR63 snR63 yes 455 141 153 62.359137 312.621464 187.4903005 2.272978805 0.085536 132 101 15257 MT_9S 5_flank no 701 31 55 30.062183 351.549079 190.805631 2.280591187 -0.393898 132 102 5349 snR30 snR30/3_flank no 801 32.384179 284.11344 158.2488095 2.199340452 0.118503 132 103 21231 YOR234C spliced yes 40 21 38 30.524689 299.355058 164.9398735 2.217325657 -0.03946 132 104 1419 Leu1 LeuCAA_i 3_flank no 315 39.150486 290.920511 165.0354985 2.217577369 0.177474 133 2 12545 MT_ORF6 + ORF7 (hypothetical) 3_flank no 664 571 595 28.846595 299.680026 164.2633105 2.215540571 -0.105056 133 3 2866 Pro7 ProTGG_vi 3_flank no 303 34.586486 270.91174 152.749113 2.183978697 0.274809 133 4 20760 YJR094W-A spliced yes 40 21 37 85.909192 417.197225 251.5532085 2.400629861 -0.440112 133 5 2995 Ser2 SerAGA_ii 5_flank no 282 39.892219 320.294144 180.0931815 2.25549727 -0.089135 133 6 2656 Pro4 ProTGG_iii 5_flank no 302 31.90917 283.133814 157.521492 2.197339817 0.109432 133 7 5506 snR32 3_flank no 388 31.664245 268.42706 150.0456525 2.176223416 0.186409 133 8 3178 Ser5 SerTGA tRNA yes 282 11 25 801.293232 917.582773 859.4380025 2.934214553 0.337268 133 9 20410 YFR032C-A spliced yes 40 9 28 38.71363 302.048865 170.3812475 2.231421794 0.071563 133 10 14820 MT_Lys; Arg1; Gly intergenic no 682 481 507 25.491092 345.475857 185.4834745 2.268305223 -0.491461 133 11 1680 Leu6 LeuGAG 5_flank no 282 48.628983 289.340625 168.984804 2.227847652 0.217852 133 12 3814 RNaseP RNaseP yes 569 36 52 34.618609 287.677282 161.1479455 2.207224773 0.160062 133 13 16634 YFR024C 5_exon no 218 21 39 29.085182 307.778101 168.4316415 2.226423681 -0.140993 133 14 17418 YIL111W 5_exon no 188 21 37 51.518213 275.550809 163.534511 2.213609417 0.360018 133 15 13376 MT_COX1 intronic no 13084 9841 9867 29.230134 325.699656 177.464895 2.249112456 -0.240006 133 16 17494 YJL041W intron no 218 61 76 36.778344 351.515756 194.14705 2.288130796 -0.355847 133 17 13629 MT_ATP6 ATP6 yes 980 241 263 27.499866 256.758046 142.128956 2.152682566 0.007722 133 18 18763 YNL162W 3_exon no 612 581 597 123.617872 402.501137 263.0595045 2.420053998 -0.107665 133 19 12057 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7171 7188 37.045102 274.713064 155.879083 2.192787842 0.30207 133 20 2014 Lys3 LysTTT_i tRNA yes 296 16 30 47.709238 325.856795 186.7830165 2.271337385 -0.102569 133 21 10368 RUF7 RUF7 yes 700 451 467 29.971873 290.014366 159.9931195 2.204101306 -0.00194 133 22 6450 snR45 snR45 yes 372 96 108 32.296232 262.824526 147.560379 2.168969762 0.245203 133 23 16213 YDR381W intron no 866 161 180 30.838774 327.684077 179.2614255 2.253486846 -0.209605 133 24 13986 MT_COB intronic no 7308 3976 3988 15913.24773 18942.66182 17427.95477 4.241246424 -0.895708 133 25 5314 snR30 snR30 yes 801 421 438 35.847889 280.363465 158.105677 2.198947464 0.238152 133 26 11089 "rRNA(18S,5.8S,25S)" 18S yes 7956 2331 2346 73.489931 323.199975 198.344953 2.297421154 0.068768 133 27 17516 YJL136C intron no 560 281 299 30.333913 272.426552 151.3802325 2.180069168 0.100024 133 28 18777 YNL265C intron no 205 81 99 30.422955 314.024537 172.223746 2.236093031 -0.131029 133 29 8991 snR17a / U3a U3a yes 690 241 257 40.742681 306.37451 173.5585955 2.239446127 0.036497 133 30 4981 snR10 5_flank no 445 30.300885 299.236688 164.7687865 2.216874943 -0.046416 133 31 16927 YGR001C intron no 162 61 80 32.19324 297.483545 164.8383925 2.217058371 0.027661 133 32 3992 RNase MRP 3_flank no 540 29.964325 288.449623 159.206974 2.201962088 0.004873 133 33 16862 YGL187C intron no 442 101 118 36.853617 332.919507 184.886562 2.266905347 -0.20483 133 34 9434 RUF2 RUF2 yes 468 11 29 33.606104 291.095804 162.350954 2.210454845 0.112477 133 35 15213 MT_COX3 cox3 no 1010 616 637 31.42601 293.967815 162.6969125 2.211379311 0.024363 133 36 4737 snR4 3_flank no 386 95.07504 328.878199 211.9766195 2.326287962 0.162701 133 37 15314 YAL003W intron no 466 81 100 39.180004 299.862213 169.5211085 2.229223784 0.092958 133 38 8964 snR17a / U3a U3a yes 690 106 118 72.280598 312.875318 192.577958 2.284606577 0.141345 133 39 643 Gln2 GlnTTG_i tRNA yes 272 1 18 59.130816 330.134054 194.632435 2.289215216 -0.071253 133 40 8659 LSR1 / U2 RNA 5_flank no 1375 29.202926 278.270075 153.7365005 2.186776991 0.012724 133 41 19193 YPL081W 5_exon no 601 21 40 33.166505 312.869483 173.017994 2.238091272 -0.065142 133 42 4077 SRP SRP yes 875 276 293 69.138999 301.815266 185.4771325 2.268290373 0.211473 133 43 21576 copy of SH5622 no 750 45.018277 276.680539 160.849408 2.206419467 0.330451 133 44 15315 YAL003W intron no 466 101 120 33.015625 271.53823 152.2769275 2.182634105 0.222018 133 45 9720 RUF4 RUF4 yes 988 376 391 32.920607 307.141502 170.0310545 2.230528248 -0.022559 133 46 6145 snR39B snR39B yes 296 66 85 31.834389 312.32456 172.0794745 2.235729071 -0.077807 133 47 16023 YDL189W intron no 199 121 138 30.762694 276.033499 153.3980965 2.185819971 0.104318 133 48 9431 RUF2 5_flank/RUF2 no 468 34.607694 289.72502 162.166357 2.209960761 0.142402 133 49 6019 snR37 snR37 yes 586 11 30 30.674028 304.594103 167.6340655 2.224362278 -0.066307 133 50 15203 MT_COX3 cox3 no 1010 466 480 52.28919 292.391961 172.3405755 2.236387539 0.205998 133 51 4566 U3b (snR17b) U3b yes 662 386 402 56.383853 305.54486 180.9643565 2.257593043 0.111391 133 52 17464 YIL148W intron no 534 381 401 30.914686 305.192936 168.053811 2.225448366 -0.061763 133 53 6817 snR52 5_flank/snR52 no 292 29.119863 312.348482 170.7341725 2.232320454 -0.166889 133 54 3177 Ser5 SerTGA tRNA yes 282 6 19 644.439835 694.908388 669.6741115 2.82586351 0.541475 133 55 8246 snoRNA cluster4 5_flank no 638 16 35 33.579227 300.653834 167.1165305 2.223019411 0.038404 133 56 20497 YGR001C spliced yes 40 1 16 53.197174 309.496252 181.346713 2.258509688 0.060865 133 57 14361 MT_ORF9; ORF10 ORF9 yes 578 181 205 29.01921 289.282156 159.150683 2.201808507 -0.048763 133 58 6616 snR48 5_flank no 313 47.765924 304.417195 176.0915595 2.24573854 0.077383 133 59 1710 Leu6 LeuGAG 3_flank no 282 38.69326 297.053989 167.8736245 2.224982467 0.118106 133 60 4540 U3b (snR17b) U3b yes 662 256 274 30.554172 300.844602 165.699387 2.219320902 -0.047591 133 61 2654 Pro4 ProTGG_iii 5_flank no 302 32.72951 293.335695 163.0326025 2.212274461 0.070764 133 62 9969 RUF5-1 RUF5-1 yes 975 651 667 41.150016 324.355885 182.7529505 2.261864397 -0.11928 133 63 1973 Lys2 LysCTT_ii tRNA/3_flank no 273 40.12389 287.406822 163.765356 2.214222034 0.213669 133 64 10297 RUF7 RUF7 yes 700 96 117 30.677539 311.345614 171.0115765 2.233025511 -0.106553 133 65 1620 Leu5 LeuCAA_v 5_flank no 315 30.550643 283.014538 156.7825905 2.195297836 0.060312 133 66 11095 "rRNA(18S,5.8S,25S)" 18S yes 7956 2361 2374 107.443576 326.041858 216.742717 2.335944513 0.256503 133 67 1905 Lys1 LysCTT_i 5_flank no 272 50.474376 310.594133 180.5342545 2.256559617 0.037901 133 68 17916 YLR061W intron no 489 381 398 30.63843 292.17206 161.405245 2.207917643 0.009141 133 69 3418 Trp1 TrpCCA 5_flank no 306 43.177082 294.149229 168.6631555 2.227020221 0.155705 133 70 529 Cys1 CysGCA 5_flank no 272 28.879633 294.149009 161.514321 2.208211036 -0.078471 133 71 8787 LSR1 / U2 RNA U2 yes 1375 576 593 30.528118 289.838422 160.18327 2.204617155 0.020139 133 72 13888 MT_COB intronic no 7308 2506 2531 28.380175 315.817972 172.0990735 2.235778532 -0.214094 133 73 15982 YDL136W intron no 505 221 240 28.258142 296.93291 162.595526 2.211108591 -0.124817 133 74 1630 Leu5 LeuCAA_v tRNA yes 315 16 27 32.047679 273.861659 152.954669 2.184562739 0.175259 133 75 3843 RNaseP RNaseP yes 569 181 196 64.951069 298.738904 181.8449865 2.259701332 0.214922 133 76 1589 Leu4 LeuCAA_iv 3_flank no 314 30.278905 289.736868 160.0078865 2.204141389 0.012225 133 77 17299 YHR141C 3_exon no 541 501 517 699.782663 864.650261 782.216462 2.893326952 0.271638 133 78 1181 His1 HisGTG 3_flank no 272 31.709834 275.069662 153.389748 2.185796334 0.156089 133 79 6931 snR58 snR58 yes 296 16 33 29.065774 257.102276 143.084025 2.155591148 0.104239 133 80 18594 YNL069C exon/intron no 549 41 58 31.35397 330.984101 181.1690355 2.258083972 -0.227508 133 81 2128 Met1 MetCAT_i tRNA yes 273 26 42 44.757827 316.404094 180.5809605 2.256671959 -0.039227 133 82 10582 RUF8 RUF8 yes 1151 836 853 29.810075 300.538206 165.1741405 2.217942056 -0.07146 133 83 1295 Ile2 IleTAT_i 3_flank no 333 31.941262 296.247963 164.0946125 2.215094323 0.027119 133 84 18730 YNL147W intron no 220 141 158 42.147948 289.597475 165.8727115 2.219774944 0.196946 133 85 21483 copy of SH1656 no 315 31.891624 288.623065 160.2573445 2.204817942 0.073504 133 86 9648 RUF4 RUF4 yes 988 16 28 54.12763 319.455931 186.7917805 2.271357762 -0.015981 133 87 865 Glu2 GluTTC_i 3_flank no 272 31.615732 311.36846 171.492096 2.234244108 -0.075232 133 88 13504 MT_COX1 intronic no 13084 11761 11780 29.418408 302.662282 166.040345 2.220213627 -0.098237 133 89 4135 SRP SRP yes 875 566 578 129.844229 352.393188 241.1187085 2.382230909 0.214183 133 90 17695 YKL006W intron no 498 401 423 26.964759 275.508939 151.236849 2.17965762 -0.105688 133 91 17661 YKL002W 3_exon no 168 121 138 31.562608 293.375492 162.46905 2.210770641 0.032605 133 92 12728 MT_COX1 exon1 yes 13084 121 140 28.387173 300.35541 164.3712915 2.215825968 -0.132999 133 93 13250 MT_COX1 ai4 no 13084 7951 7973 25.334668 307.402713 166.3686905 2.221071598 -0.340645 133 94 11661 "rRNA(18S,5.8S,25S)" 25S yes 7956 5191 5204 116.757879 357.269742 237.0138105 2.374773653 0.108655 133 95 5739 snR34 3_flank no 750 77.431413 302.314347 189.87288 2.278462938 0.254885 133 96 8813 LSR1 / U2 RNA U2 yes 1375 706 718 906.90435 1040.461476 973.682913 2.988417549 0.282357 133 97 2529 Pro1 ProAGG 3_flank no 272 28.767443 285.256651 157.012047 2.195932976 -0.043642 133 98 5776 snR35 snR35 yes 740 66 87 29.141717 340.597573 184.869645 2.266865607 -0.328563 133 99 7183 snR64 5_flank no 301 65.867133 318.309437 192.088285 2.283500879 0.059927 133 100 18382 YMR116C intron no 373 141 160 31.863634 339.780343 185.8219885 2.269097103 -0.285652 133 101 7143 snR63 snR63 yes 455 221 238 36.258609 306.800857 171.529733 2.234339412 0.020173 133 102 6110 snR37 3_flank no 586 42.762151 275.593433 159.177792 2.201882476 0.336756 133 103 5440 snR31 3_flank no 425 32.563092 331.370747 181.9669195 2.259992443 -0.214726 133 104 16211 YDR381W intron no 866 121 138 34.808784 332.4382 183.623492 2.263928242 -0.206 134 2 7191 snR64 snR64 yes 301 21 37 120.977494 371.601854 246.289674 2.391446204 0.048062 134 3 18754 YNL162W intron no 612 401 418 30.939908 289.711987 160.3259475 2.205003815 0.034934 134 4 2884 Pro8 ProTGG_vii 5_flank no 305 30.767193 406.385692 218.5764425 2.339603353 -0.778457 134 5 8448 snoRNA cluster 5 snR128 yes 586 406 421 38.397969 291.007776 164.7028725 2.216701174 0.174517 134 6 9964 RUF5-1 RUF5-1 yes 975 626 642 34.246944 282.247156 158.24705 2.199335623 0.189037 134 7 981 Gly1 GlyCCC_i 3_flank no 272 34.004415 302.237033 168.120724 2.225621252 0.030634 134 8 3674 Val2 ValAAC_ii 3_flank no 274 35.676197 289.170974 162.4235855 2.210649093 0.159723 134 9 15735 YBR230C 3_exon no 197 161 175 41.145421 256.280782 148.7131015 2.172349231 0.517179 134 10 2519 Pro1 ProAGG 3_flank no 272 65.623633 348.378877 207.001255 2.315972978 -0.164238 134 11 16786 YGL103W intron no 611 401 420 29.469688 292.004209 160.7369485 2.206115719 -0.0373 134 12 6738 snR49 3_flank no 365 33.135826 309.973639 171.5547325 2.234402703 -0.042544 134 13 1446 Leu2 LeuCAA_ii tRNA yes 314 1 13 93.893313 327.02426 210.4587865 2.323167062 0.168204 134 14 4667 snR3 3_flank no 395 36.849486 263.164818 150.007152 2.176111966 0.394407 134 15 8143 snoRNA cluster 3; intergenic no 743 226 243 65.166626 338.925335 202.0459805 2.305450215 -0.099322 134 16 15974 YDL136W intron no 505 61 79 33.13995 360.266891 196.7034205 2.293811912 -0.435105 134 17 13303 MT_COX1 ai5a no 13084 8746 8765 31.275678 321.344305 176.3099915 2.246276924 -0.155498 134 18 17046 YGR214W intron no 555 61 78 31.292938 286.343862 158.8184 2.200900816 0.068312 134 19 4277 telomerase RNA telomerase yes 1501 421 435 61.582767 300.643959 181.113363 2.257950495 0.179843 134 20 12225 5S rRNA NTS2 no 1420 81 100 35.28551 306.164274 170.724892 2.232296847 0.014042 134 21 1593 Leu4 LeuCAA_iv 3_flank no 314 78.675089 346.229064 212.4520765 2.32726098 -0.062063 134 22 21450 copy of SH252 no 272 45.716771 295.856378 170.7865745 2.232453728 0.147972 134 23 124 Arg1 ArgACG_i 5_flank/tRNA5 no 273 44.459171 291.728284 168.0937275 2.225551508 0.182542 134 24 3483 Tyr1 TyrGTA_i 5_flank no 289 57.211038 307.211952 182.211495 2.260575771 0.101628 134 25 251 Arg3 ArgCCG 3_flank no 272 35.754991 296.781919 166.268455 2.220809861 0.096433 134 26 7905 snoRNA cluster1 intergenic no 1574 1321 1342 30.064391 323.916394 176.9903925 2.247949692 -0.200512 134 27 14826 MT_Lys; Arg1; Gly tRNAGly/3_flank no 682 571 595 30.310481 307.082578 168.6965295 2.227106148 -0.093738 134 28 19508 ACT1 ACT1 yes 401 61 76 52.220921 306.338248 179.2795845 2.253530837 0.082678 134 29 5734 snR34 3_flank no 750 36.659711 301.145309 168.90251 2.227636104 0.07071 134 30 20478 YGL189C spliced yes 40 21 39 34.519054 305.658194 170.088624 2.230675268 0.009037 134 31 10236 RUF6 RUF6 yes 1251 1026 1042 32.331163 308.508953 170.420058 2.231520709 -0.041018 134 32 15534 YBR078W exon/intron no 430 41 55 44.480029 303.836977 174.158503 2.240944683 0.071056 134 33 95 Ala2 AlaTGC 3_flank no 273 33.005098 282.639861 157.8224795 2.198168862 0.147909 134 34 15330 YAL003W intron/exon no 466 401 420 33.820377 297.144221 165.482299 2.218751546 0.070385 134 35 376 Asn1 AsnGTT 5_flank no 274 33.626953 299.789324 166.7081385 2.221956802 0.046108 134 36 15919 YDL083C intron no 532 461 482 33.458772 297.207447 165.3331095 2.218359834 0.065408 134 37 8706 LSR1 / U2 RNA U2 yes 1375 171 187 49.344534 287.505021 168.4247775 2.226405982 0.237389 134 38 5157 snR13 5_flank no 324 31.241514 310.11166 170.676587 2.23217395 -0.080219 134 39 16947 YGR027C intron no 412 301 318 29.194818 285.883363 157.5390905 2.197388334 -0.023651 134 40 2819 Pro7 ProTGG_vi 5_flank no 303 31.129016 281.3349 156.231958 2.193769876 0.09532 134 41 464 Asp1 AspGTC_i 3_flank no 271 79.845947 340.980545 210.413246 2.323073076 -0.01826 134 42 11345 "rRNA(18S,5.8S,25S)" 25S yes 7956 3611 3624 284.927584 518.467306 401.697445 2.603899069 0.131931 134 43 8388 snoRNA cluster 5 snR190 yes 586 106 123 87.398634 328.884294 208.141464 2.318358605 0.115273 134 44 20316 YER044C-A spliced yes 40 5 22 33.911249 328.14356 181.0274045 2.257744325 -0.173743 134 45 20675 YIL106W spliced yes 40 9 30 30.904124 314.457468 172.680796 2.237244042 -0.117179 134 46 6645 snR48 snR48 yes 313 51 68 36.754885 325.072296 180.9135905 2.257471193 -0.138427 134 47 17270 YHR123W intron no 191 101 120 30.817315 285.021891 157.919603 2.198436044 0.060839 134 48 94 Ala2 AlaTGC 3_flank no 273 48.505773 292.898362 170.7020675 2.232238781 0.183968 134 49 20234 YDR139C spliced yes 40 17 38 28.854749 344.498919 186.676834 2.271090427 -0.360807 134 50 13292 MT_COX1 ai5a no 13084 8581 8605 30.869324 359.531767 195.2005455 2.290481027 -0.438417 134 51 5164 snR13 5_flank no 324 32.944833 309.685133 171.314983 2.233795347 -0.042636 134 52 18633 YNL096C intron no 445 281 297 41.055168 310.764048 175.909608 2.245289561 -0.002189 134 53 18229 YML026C intron no 501 181 195 41.321049 273.2737 157.2973745 2.196721474 0.357244 134 54 14253 MT_VAR1 5_flank no 1467 1 23 29.554349 327.42957 178.4919595 2.251618657 -0.238241 134 55 6308 snR42 snR42 yes 551 321 337 51.124728 287.378561 169.2516445 2.228532897 0.246122 134 56 8519 snR19 / U1 RNA U1 yes 868 91 109 34.083984 316.174619 175.1293015 2.243358816 -0.079813 134 57 12156 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7666 7684 79.750086 389.545785 234.6479355 2.370416738 -0.329632 134 58 19307 YPL198W intron no 509 201 220 38.614505 373.81397 206.2142375 2.314318647 -0.516957 134 59 1036 Gly3 GlyGCC 5_flank no 271 30.476344 300.33114 165.403742 2.218545331 -0.047109 134 60 6730 snR49 3_flank no 365 32.637421 270.24987 151.4436455 2.180251055 0.218744 134 61 5722 snR34 snR34 yes 750 531 549 31.66327 302.710359 167.1868145 2.223202023 -0.021741 134 62 11279 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3281 3301 30.661452 295.982491 163.3219715 2.213044614 -0.013931 134 63 13541 MT_COX1 intronic no 13084 12316 12344 28.585061 324.866782 176.7259215 2.247300255 -0.258595 134 64 6776 snR50 snR50 yes 290 56 74 32.688479 291.955541 162.32201 2.210377412 0.078138 134 65 13548 MT_COX1 intronic no 13084 12421 12440 30.473918 308.339637 169.4067775 2.228930781 -0.095644 134 66 18022 YLR306W intron no 234 101 121 32.293063 296.515011 164.404037 2.215912478 0.036898 134 67 17244 YHR079C 3_exon no 186 161 177 33.98174 302.212075 168.0969075 2.225559724 0.030562 134 68 10559 RUF8 RUF8 yes 1151 721 738 35.563642 298.553109 167.0583755 2.222868254 0.079506 134 69 15103 MT_COX 2; ORF1 ORF2exon2 yes 2427 2146 2170 29.160589 337.982493 183.571541 2.263805354 -0.310651 134 70 16915 YGL251C intron no 252 61 75 82.937224 333.196841 208.0670325 2.318203273 0.056415 134 71 11765 "rRNA(18S,5.8S,25S)" 25S yes 7956 5711 5727 10977.13406 14665.77954 12821.4568 4.107937373 -0.923867 134 72 4913 snR9 5_flank no 387 36.145819 281.096809 158.621314 2.200361543 0.235124 134 73 1448 Leu2 LeuCAA_ii tRNA yes 314 11 22 53.490166 296.397575 174.9438705 2.242898731 0.175657 134 74 10320 RUF7 RUF7 yes 700 211 225 51.533075 313.1216 182.3273375 2.26085179 0.021605 134 75 16244 YDR381W intron no 866 781 800 29.346433 296.836952 163.0916925 2.21243184 -0.06567 134 76 9166 snR7 U5 RNA U5 yes 415 101 115 72.437932 325.92503 199.181481 2.299248957 0.041612 134 77 4509 U3b (snR17b) U3b yes 662 101 117 48.178042 300.900616 174.539329 2.241893302 0.110165 134 78 4592 U3b (snR17b) 3_flank no 662 60.426574 308.569812 184.498193 2.265992117 0.107284 134 79 12491 MT_tRNA Pro 5_flank no 272 16 42 29.121307 297.439559 163.280433 2.212934143 -0.080336 134 80 2561 Pro2 ProTGG_i tRNA-intron no 303 i5 i22 29.401799 294.494986 161.9483925 2.209376642 -0.052194 134 81 12589 MT_15S 15S yes 1848 586 608 33.698969 344.450276 189.0746225 2.276633242 -0.308136 134 82 13007 MT_COX1 ai2 no 13084 4306 4327 29.875958 315.753748 172.814853 2.237581066 -0.160085 134 83 5695 snR34 snR34 yes 750 396 415 30.005992 300.568536 165.287264 2.218239391 -0.064805 134 84 21779 copy of SH14229 no 431 28.007365 335.394539 181.700952 2.259357203 -0.338633 134 85 1055 Gly3 GlyGCC tRNA yes 271 11 30 32.040848 309.92075 170.980799 2.232947342 -0.056036 134 86 18228 YML026C intron no 501 161 175 35.98114 291.498891 163.7400155 2.214154827 0.143432 134 87 5014 snR10 snR10 yes 445 101 122 31.716691 313.126611 172.421651 2.236591799 -0.085679 134 88 19960 YBL059C-A spliced yes 40 21 37 43.496019 289.91028 166.7031495 2.221943805 0.196804 134 89 5733 snR34 3_flank no 750 29.152439 290.353827 159.753133 2.203449384 -0.04657 134 90 1773 Leu7 LeuTAA 3_flank no 284 30.772766 317.141146 173.956956 2.2404418 -0.137274 134 91 12347 5S rRNA NTS2 no 1420 691 707 61.574494 292.904274 177.239384 2.248560232 0.246897 134 92 21557 copy of SH4783 no 404 26.287917 277.952022 152.1199695 2.18218623 -0.160528 134 93 9665 RUF4 RUF4 yes 988 101 113 71.19311 311.336314 191.264712 2.281634851 0.14715 134 94 18159 YLR426W intron/exon no 171 121 135 41.346586 285.423059 163.3848225 2.213211711 0.235762 134 95 9704 RUF4 RUF4 yes 988 296 311 45.41048 294.400931 169.9057055 2.230207963 0.160542 134 96 983 Gly2 GlyCCC_ii 5_flank no 272 41.997625 278.169129 160.083377 2.204346237 0.309117 134 97 240 Arg3 ArgCCG tRNA yes 272 56 68 42.572495 297.095665 169.83408 2.230024843 0.126438 134 98 15964 YDL130W intron no 401 261 278 29.243766 274.573275 151.9085205 2.181582134 0.032704 134 99 317 Arg5 ArgTCT 5_flank no 272 31.636205 355.39682 193.5165125 2.286718029 -0.401317 134 100 2205 Phe1 PheGAA_i 5_flank no 292 31.969857 304.678143 168.324 2.226146043 -0.023608 134 101 554 Cys1 CysGCA tRNA/3_flank no 272 34.278423 289.384802 161.8316125 2.209063361 0.141347 134 102 5173 snR13 snR13 yes 324 21 38 55.330123 316.075457 185.70279 2.268818429 0.018079 134 103 6495 snR46 5_flank no 397 32.530099 266.282811 149.406455 2.174369361 0.239006 134 104 10458 RUF8 RUF8 yes 1151 216 232 73.571498 314.429237 194.0003675 2.287802553 0.136548 135 2 18509 YMR194W 3_exon no 563 541 557 39.466902 318.146386 178.806644 2.252383652 -0.071754 135 3 414 Asn1 AsnGTT 3_flank no 274 84.170584 343.51749 213.844037 2.330097145 -0.007147 135 4 2233 Phe1 PheGAA_i intron/tRNA no 292 i4 40 29.083417 320.188868 174.6361425 2.24213413 -0.213842 135 5 13383 MT_COX1 exon5b yes 13084 9946 9966 32.874565 281.981122 157.4278435 2.197081546 0.148067 135 6 1180 His1 HisGTG 3_flank no 272 32.677802 347.102684 189.890243 2.27850265 -0.332379 135 7 18644 YNL112W intron no 1102 61 82 30.528186 301.594119 166.0611525 2.220268048 -0.05306 135 8 18126 YLR388W intron no 258 161 177 41.951015 274.158292 158.0546535 2.198807287 0.349596 135 9 18255 YML034W 3_exon no 226 201 215 45.558513 300.068761 172.813637 2.23757801 0.108699 135 10 21451 copy of SH294 no 272 28.093349 270.422749 149.258049 2.173937761 -0.012335 135 11 2332 Phe3 PheGAA_iii 5_flank/tRNA no 291 29.871354 329.696911 179.7841325 2.254751359 -0.239805 135 12 9115 snR14 / U4 RNA 3_flank no 360 39.262605 333.609182 186.4358935 2.270529528 -0.203123 135 13 12758 MT_COX1 ai1 no 13084 571 588 63.953237 359.037654 211.4954455 2.325301019 -0.24937 135 14 14208 MT_ATP9 5_flank no 431 16 44 31.538641 296.034639 163.78664 2.214278474 0.015199 135 15 15190 MT_COX3 cox3 no 1010 271 293 33.377283 310.668197 172.02274 2.235585861 -0.045069 135 16 8876 LSR1 / U2 RNA U2 yes 1375 1021 1037 94.519058 463.568495 279.0437765 2.445672341 -0.608857 135 17 4033 SRP SRP yes 875 56 75 31.391878 317.85107 174.621474 2.24209765 -0.12695 135 18 9968 RUF5-1 RUF5-1 yes 975 646 663 27.611548 295.252492 161.43202 2.207989681 -0.153225 135 19 13077 MT_COX1 ai3 no 13084 5356 5372 33.270084 271.586004 152.428044 2.183064877 0.229712 135 20 541 Cys1 CysGCA tRNA yes 272 6 19 113.317579 390.046027 251.681803 2.400851816 -0.104184 135 21 18867 YNR053C intron no 631 321 337 52.789855 317.605278 185.1975665 2.267635276 -0.008367 135 22 7863 snoRNA cluster1 intergenic/snR73 no 1574 1111 1130 26.397953 285.158268 155.7781105 2.192506432 -0.18169 135 23 17462 YIL148W intron no 534 341 355 54.251171 291.80806 173.0296155 2.238120443 0.220322 135 24 14856 MT_Ser2; Arg2 tRNASer yes 360 106 125 35.18142 314.220615 174.7010175 2.242295434 -0.051371 135 25 7590 snR189 snR189 yes 389 21 37 33.709916 305.905382 169.807649 2.229957249 -0.002782 135 26 11348 "rRNA(18S,5.8S,25S)" 25S yes 7956 3626 3643 28.020014 286.743734 157.381874 2.196954712 -0.091469 135 27 818 Glu1 GluCTC 3_flank no 272 32.382577 280.150309 156.266443 2.193865727 0.144314 135 28 17794 YKL186C intron no 249 141 160 70.066525 415.692362 242.8794435 2.385390759 -0.553465 135 29 11727 "rRNA(18S,5.8S,25S)" 25S yes 7956 5521 5539 42.982268 302.476468 172.729368 2.237366184 0.078488 135 30 3413 Thr4 ThrTGT_ii 3_flank no 272 30.493502 309.795229 170.1443655 2.230817572 -0.103645 135 31 11368 "rRNA(18S,5.8S,25S)" 25S yes 7956 3726 3742 3691.168285 4159.035804 3925.102045 3.593850952 -0.153918 135 32 1209 Ile1 IleAAT tRNA yes 274 6 18 42.649955 337.9883 190.3191275 2.279482438 -0.226594 135 33 19073 YOR293W intron no 537 221 240 30.137893 312.586602 171.3622475 2.23391515 -0.132409 135 34 5298 snR30 snR30 yes 801 341 359 32.002582 299.014077 165.5083295 2.218819855 0.01201 135 35 12614 MT_15S 15S yes 1848 961 977 31.815233 299.605554 165.7103935 2.219349749 0.002241 135 36 20402 YFR031C-A spliced yes 40 1 20 33.646879 312.571679 173.109279 2.238320348 -0.056834 135 37 21389 Phe1_5 spliced yes 40 17 31 108.400313 375.292619 241.846466 2.383539746 -0.050675 135 38 20533 YGR148C spliced yes 40 13 32 35.320485 315.441374 175.3809295 2.243982367 -0.05932 135 39 7192 snR64 snR64 yes 301 26 43 2062.695306 1961.593719 2012.144513 3.303659169 0.338432 135 40 3001 Ser2 SerAGA_ii 5_flank no 282 31.116392 294.22037 162.668381 2.211303144 0.012443 135 41 5362 snR30 3_flank no 801 31.038342 304.134747 167.5865445 2.224239146 -0.0512 135 42 12855 MT_COX1 ai1 no 13084 2026 2043 34.925663 278.451202 156.6884325 2.195036936 0.23446 135 43 14017 MT_COB exon4 yes 7308 4441 4462 28.966381 258.475892 143.7211365 2.157520643 0.092233 135 44 5450 snR32 5_flank no 388 34.844112 340.317593 187.5808525 2.273188505 -0.271359 135 45 4192 telomerase RNA 5_flank/telomerase no 1501 36.797225 355.362261 196.079743 2.292432729 -0.385626 135 46 19918 YAL030W spliced yes 40 1 13 77.402294 326.202939 201.8026165 2.304926793 0.071819 135 47 13152 MT_COX1 intronic no 13084 6481 6493 41.732032 288.456008 165.09402 2.217731343 0.207075 135 48 10379 RUF7 3_flank no 700 30.914982 306.840694 168.877838 2.22757266 -0.071667 135 49 7783 snoRNA cluster1 intergenic no 1574 711 731 30.956923 291.154194 161.0555585 2.206975718 0.026365 135 50 21300 YPL198W spliced yes 40 21 38 31.028709 301.329668 166.1791885 2.220576634 -0.034464 135 51 19471 ADH1 ADH1 yes 400 121 145 31.140297 280.428007 155.784152 2.192523275 0.101643 135 52 8911 LSR1 / U2 RNA 3_flank no 1375 35.28529 350.987922 193.136606 2.285864595 -0.356471 135 53 8581 snR19 / U1 RNA U1 yes 868 401 413 158.821664 461.291809 310.0567365 2.491441172 -0.185737 135 54 13772 MT_COB intronic no 7308 766 792 29.717277 321.832127 175.774702 2.24495637 -0.200753 135 55 14958 MT_Met 3_flank no 276 241 257 31.974361 264.237154 148.1057575 2.170571942 0.222502 135 56 15337 YAL030W intron no 213 81 102 32.188401 319.148494 175.6684475 2.244693763 -0.126642 135 57 19606 RNA14 1.1 RNA14 1.1 yes 401 21 38 34.415831 311.260131 172.837981 2.237639184 -0.037086 135 58 10921 "rRNA(18S,5.8S,25S)" 18S yes 7956 1491 1511 452.229589 1320.317944 886.2737665 2.947567894 -0.965859 135 59 17618 YJR021C 3_exon no 180 141 160 30.472792 319.310973 174.8918825 2.242769652 -0.160057 135 60 9452 RUF2 RUF2 yes 468 101 116 32.583207 299.027621 165.805414 2.219598707 0.030702 135 61 6077 snR37 snR37 yes 586 301 313 85.724049 342.684897 214.204473 2.330828535 0.008424 135 62 4997 snR10 snR10 yes 445 16 30 47.201508 296.70559 171.953549 2.235411144 0.144662 135 63 11847 "rRNA(18S,5.8S,25S)" 25S yes 7956 6121 6139 9139.599093 6181.363504 7660.481299 3.884256057 0.291928 135 64 20619 YHR097C spliced yes 40 17 38 30.483961 326.333319 178.40864 2.251415883 -0.204188 135 65 9780 RUF4 RUF4 yes 988 676 691 96.35348 389.789942 243.071711 2.385734418 -0.2139 135 66 9468 RUF2 RUF2 yes 468 181 200 32.156729 322.768249 177.462489 2.249106568 -0.154922 135 67 13140 MT_COX1 intronic no 13084 6301 6313 33.84348 296.881123 165.3623015 2.218436508 0.072857 135 68 12513 MT_ORF6 + ORF7 (hypothetical) 5_flank/MT_ORF6_7 no 664 91 119 27.436365 312.18913 169.8127475 2.229970289 -0.23739 135 69 1351 Ile3 IleTAT_ii 3_flank no 333 31.051742 271.125404 151.088573 2.179231619 0.14274 135 70 1337 Ile3 IleTAT_ii tRNA-intron no 333 i29 i45 46.437501 299.986803 173.212152 2.238578357 0.11217 135 71 16778 YGL103W intron no 611 241 257 32.458571 289.707726 161.0831485 2.20705011 0.084998 135 72 6407 snR43 3_flank no 409 36.211225 302.582377 169.396801 2.228905205 0.053848 135 73 16025 YDL189W 3_exon no 199 161 177 57.587919 351.860179 204.724049 2.311168862 -0.241843 135 74 18875 YNR053C intron no 631 481 499 28.473015 287.562875 158.017945 2.19870641 -0.070349 135 75 14289 MT_VAR1 VAR1 yes 1467 541 567 26.608924 301.562262 164.085593 2.215070451 -0.238853 135 76 16955 YGR029W intron no 183 61 78 30.596472 298.069399 164.3329355 2.215724613 -0.029083 135 77 10965 "rRNA(18S,5.8S,25S)" 18S yes 7956 1711 1729 34.671176 312.776263 173.7237195 2.239859119 -0.046034 135 78 5969 snR36 snR36 yes 555 301 317 32.932505 287.609458 160.2709815 2.204854897 0.113518 135 79 20577 YHR012W spliced yes 40 21 40 29.231131 294.18126 161.7061955 2.208726659 -0.05982 135 80 11731 "rRNA(18S,5.8S,25S)" 25S yes 7956 5541 5558 19549.94514 15909.82766 17729.8864 4.248705953 -0.353931 135 81 9228 snR6 / U6 RNA U6 yes 312 11 25 50.078007 284.978221 167.528114 2.224087699 0.263704 135 82 9759 RUF4 RUF4 yes 988 571 585 445.063108 1094.273362 769.668235 2.886303563 -0.668902 135 83 11628 "rRNA(18S,5.8S,25S)" 25S yes 7956 5026 5041 3882.705771 5470.39064 4676.548206 3.669925415 -0.54775 135 84 11133 "rRNA(18S,5.8S,25S)" 18S yes 7956 2551 2566 128.131817 395.73978 261.9357985 2.418194857 -0.044178 135 85 18132 YLR406C 5_exon no 449 21 37 44.515336 277.702693 161.1090145 2.207119841 0.319122 135 86 16905 YGL232W 5_exon no 158 21 37 34.071555 303.79479 168.9331725 2.227714938 0.018746 135 87 19772 Negative Control no 60 NA #VALUE! 33.813488 266.986864 150.400176 2.177248344 0.278075 135 88 12501 MT_tRNA Pro tRNA/3_flank no 272 166 188 27.464986 314.008866 170.736926 2.232327458 -0.243509 135 89 10656 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 166 183 60.93646 371.017089 215.9767745 2.334407051 -0.350568 135 90 7524 snR79 5_flank no 284 28.717284 276.709073 152.7131785 2.183876516 -0.005842 135 91 17930 YLR093C 5_exon no 241 1 17 43.804536 316.766221 180.2853785 2.255960506 -0.045431 135 92 12703 MT_ORF 8 ORF8 yes 491 211 228 51.051462 330.734336 190.892899 2.280789773 -0.123159 135 93 19240 YPL090C intron no 494 361 379 46.960716 332.34178 189.651248 2.277955705 -0.158473 135 94 19727 Negative Control no 60 NA #VALUE! 41.276556 283.371683 162.3241195 2.210383056 0.255761 135 95 4980 snR10 5_flank no 445 47.361365 291.254277 169.307821 2.22867702 0.196008 135 96 12392 5S rRNA NTS2 no 1420 916 932 63.615022 304.540607 184.0778145 2.265001449 0.15887 135 97 14400 MT_21S 21S_rRNA3 yes 4639 211 232 28.953082 296.449456 162.701269 2.21139094 -0.084898 135 98 7827 snoRNA cluster1 intergenic no 1574 931 950 29.39168 289.622903 159.5072915 2.202780541 -0.030514 135 99 19242 YPL090C intron no 494 401 423 27.751566 327.866972 177.809269 2.249954397 -0.30642 135 100 17827 YKR057W 3_exon no 422 401 417 44.41534 291.806735 168.1110375 2.225596228 0.181664 135 101 21407 Ser3 spliced yes 40 5 17 182.103052 419.448712 300.775882 2.478243009 0.125326 135 102 16412 YER056C intron no 497 301 317 34.518738 283.059517 158.7891275 2.200820762 0.192 135 103 8387 snoRNA cluster 5 snR190 yes 586 101 116 51.404135 325.4769 188.4405175 2.275174288 -0.079636 135 104 13945 MT_COB bi3 no 7308 3361 3386 28.358909 352.147106 190.2530075 2.279331531 -0.42225 136 2 18911 YOL120C intron no 547 421 440 29.515638 296.74749 163.131564 2.212538 -0.058454 136 3 17367 YIL052C intron no 572 241 260 31.435845 314.362365 172.899105 2.237792745 -0.099096 136 4 3202 Ser5 SerTGA 3_flank no 282 35.309711 320.926416 178.1180635 2.250707965 -0.106226 136 5 20719 YJL136C spliced yes 40 9 26 37.122264 313.252913 175.1875885 2.243503334 -0.034036 136 6 14301 MT_VAR1 VAR1 yes 1467 721 747 28.026654 286.493362 157.260008 2.196618293 -0.089938 136 7 14553 MT_21S 21S_rRNA3 yes 4639 2506 2529 28.856485 310.628381 169.742433 2.229790423 -0.166209 136 8 7041 snR62 5_flank/snR62 no 300 30.652911 335.734376 183.1936435 2.2629104 -0.272088 136 9 20356 YER117W spliced yes 40 17 34 30.501446 293.11781 161.809628 2.209004359 -0.001488 136 10 5101 snR11 snR11 yes 458 106 122 36.169977 289.162065 162.666021 2.211296843 0.165491 136 11 610 Gln1 GlnCTG 3_flank no 272 28.332008 279.63357 153.982789 2.187472181 -0.040828 136 12 4703 snR4 snR4 yes 386 51 72 30.156185 289.166806 159.6614955 2.203200193 0.011483 136 13 4392 telomerase RNA telomerase yes 1501 996 1015 37.729122 345.044355 191.3867385 2.281911842 -0.301243 136 14 9669 RUF4 RUF4 yes 988 121 139 33.795859 294.917134 164.3564965 2.215786875 0.088677 136 15 11877 "rRNA(18S,5.8S,25S)" 25S yes 7956 6271 6284 13331.99144 25882.26155 19607.12649 4.292413951 -1.631028 136 16 6010 snR37 5_flank no 586 33.583526 312.782855 173.1831905 2.238505736 -0.059283 136 17 14183 MT_COB exon6 yes 7308 6931 6950 29.698481 320.223225 174.960853 2.242940887 -0.192186 136 18 5759 snR35 5_flank no 740 33.410064 299.093301 166.2516825 2.220766049 0.049173 136 19 5226 snR30 5_flank/snR30 no 801 31.523617 303.86802 167.6958185 2.224522234 -0.033384 136 20 17981 YLR211C 3_exon no 159 141 158 44.925815 354.326703 199.626259 2.300217668 -0.338445 136 21 19807 Negative Control no 60 NA #VALUE! 47.183592 304.478107 175.8308495 2.245095074 0.073843 136 22 18393 YMR125W 5_exon no 422 1 23 26.463561 283.657321 155.060441 2.190501015 -0.171409 136 23 9417 RUF2 5_flank no 468 59.298493 357.330929 208.314711 2.318719941 -0.269298 136 24 18107 YLR367W intron no 583 361 378 33.246871 272.78068 153.0137755 2.184730531 0.220902 136 25 12092 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7346 7364 38.813984 304.514496 171.66424 2.234679835 0.049084 136 26 9044 snR17a / U3a 3_flank no 690 30.10202 316.483581 173.2928005 2.23878052 -0.156465 136 27 1846 Leu9 LeuTAG_ii 5_flank no 301 31.408898 307.403947 169.4064225 2.228929871 -0.058492 136 28 13767 MT_COB intronic no 7308 691 707 33.652905 285.324396 159.4886505 2.202729783 0.150801 136 29 20730 YJL189W spliced yes 40 1 18 45.192638 307.047138 176.119888 2.245808401 0.044491 136 30 5660 snR34 snR34 yes 750 221 236 80.783223 334.63298 207.7081015 2.317453436 0.032112 136 31 5463 snR32 5_flank no 388 36.762968 307.236015 171.9994915 2.235527163 0.019267 136 32 14376 MT_ORF9; ORF10 ORF10 yes 578 406 425 28.376295 294.971468 161.6738815 2.208639865 -0.109508 136 33 3341 Thr3 ThrTGT_i tRNA yes 272 51 67 36.481104 285.698769 161.0899365 2.20706841 0.198815 136 34 13739 MT_COB exon1 yes 7308 271 291 30.149298 306.908999 168.5291485 2.226675027 -0.098265 136 35 9411 RUF1 3_flank no 750 34.045024 291.59736 162.821192 2.21171093 0.119695 136 36 9210 snR6 / U6 RNA 5_flank no 312 39.924332 305.026599 172.4754655 2.236727326 0.046965 136 37 20016 YBR084C-A spliced yes 40 21 37 33.639067 292.156546 162.8978065 2.211915236 0.106804 136 38 892 Glu3 GluTTC_ii 5_flank no 272 31.449614 303.533119 167.4913665 2.223992426 -0.033808 136 39 8686 LSR1 / U2 RNA U2 yes 1375 71 87 29.301323 286.673706 157.9875145 2.198622767 -0.021669 136 40 6017 snR37 snR37 yes 586 1 18 53.077147 314.880866 183.9790065 2.264768269 0.015545 136 41 9165 snR7 U5 RNA U5 yes 415 96 112 68.889373 312.382642 190.6360075 2.280204934 0.125086 136 42 11944 "rRNA(18S,5.8S,25S)" 25S yes 7956 6606 6624 12565.37021 21062.82368 16814.09694 4.225673547 -1.360936 136 43 383 Asn1 AsnGTT 5_flank/tRNA no 274 113.299649 341.41775 227.3586995 2.356711576 0.187434 136 44 20862 YLR093C spliced yes 40 1 18 30.893951 267.548493 149.221222 2.173830592 0.152509 136 45 1052 Gly3 GlyGCC 5_flank/tRNA no 271 52.641608 348.576662 200.609135 2.302350705 -0.250072 136 46 1291 Ile2 IleTAT_i 3_flank no 333 30.932481 294.174705 162.553593 2.210996573 0.006538 136 47 1302 Ile2 IleTAT_i 3_flank no 333 29.006623 295.972373 162.489498 2.210825297 -0.079882 136 48 11238 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3076 3091 108.843107 337.581641 223.212374 2.348718266 0.186898 136 49 9256 snR6 / U6 RNA 3_flank no 312 66.941975 313.422686 190.1823305 2.279170165 0.104867 136 50 2377 Phe4 PheGAA_iv 5_flank no 291 33.14719 287.688624 160.417907 2.205252846 0.119796 136 51 3049 Ser3 SerCGA 5_flank no 301 39.243397 337.509674 188.3765355 2.275026805 -0.235077 136 52 21929 copy of SH21369 no 40 51.503767 276.773514 164.1386405 2.215210832 0.347833 136 53 21372 Leu8_9 spliced yes 40 1 18 33.627716 304.164163 168.8959395 2.227619209 0.010314 136 54 8788 LSR1 / U2 RNA U2 yes 1375 581 598 44.03827 342.24775 193.14301 2.285878995 -0.251786 136 55 393 Asn1 AsnGTT tRNA yes 274 45 60 34.114484 279.230538 156.672511 2.194992804 0.204775 136 56 15469 YBL087C intron/exon no 604 541 560 32.268452 312.414602 172.341527 2.236389937 -0.072912 136 57 3218 Thr1 ThrAGT 5_flank no 273 32.405141 283.091208 157.7481745 2.197964342 0.125815 136 58 4203 telomerase RNA telomerase yes 1501 51 67 33.510521 286.621538 160.0660295 2.204299172 0.138022 136 59 20182 YDL191W spliced yes 40 5 22 44.938364 320.470601 182.7044825 2.261749203 -0.073266 136 60 6086 snR37 snR37 yes 586 346 363 31.463699 284.983886 158.2237925 2.19927179 0.08276 136 61 6313 snR42 snR42/3_flank no 551 30.423824 281.061791 155.7428075 2.192407999 0.063069 136 62 10509 RUF8 RUF8 yes 1151 471 492 30.416976 300.971974 165.694475 2.219308027 -0.053069 136 63 20838 YLL050C spliced yes 40 1 18 30.397505 307.004332 168.7009185 2.227117447 -0.090275 136 64 3382 Thr4 ThrTGT_ii 5_flank/tRNA no 272 36.523192 279.524653 158.0239225 2.198722838 0.253285 136 65 16463 YER093C intron no 175 61 76 46.670425 294.477405 170.573915 2.231912617 0.163727 136 66 14446 MT_21S 21S_rRNA3 yes 4639 901 920 29.985856 311.722569 170.8542125 2.232625691 -0.132594 136 67 6516 snR46 snR46 yes 397 71 88 31.705197 276.092268 153.8987325 2.187235043 0.149105 136 68 15963 YDL130W intron no 401 241 255 72.572487 318.774425 195.673456 2.291531916 0.096969 136 69 8523 snR19 / U1 RNA U1 yes 868 111 128 85.466142 353.355497 219.4108195 2.34125804 -0.065114 136 70 142 Arg1 ArgACG_i 3_flank no 273 64.216529 296.768532 180.4925305 2.256459234 0.227595 136 71 11290 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3336 3353 34.46124 295.069338 164.765289 2.216865724 0.095475 136 72 10014 RUF6 5_flank no 1251 31.475165 294.303662 162.8894135 2.21189286 0.023892 136 73 14544 MT_21S 21S_rRNA3 yes 4639 2371 2383 149.190791 389.028832 269.1098115 2.429929532 0.110805 136 74 20555 YHL001W spliced yes 40 9 26 28.649049 318.92038 173.7847145 2.240011575 -0.222246 136 75 9826 RUF5-1 5_flank no 975 28.74023 289.48319 159.11171 2.201702143 -0.064697 136 76 9873 RUF5-1 RUF5-1 yes 975 171 187 30.809783 276.600476 153.7051295 2.186688361 0.103962 136 77 6922 snR58 5_flank no 296 28.988216 311.06877 170.028493 2.230521706 -0.164061 136 78 15006 MT_COX 2; ORF1 COX2 no 2427 691 705 55.068398 291.914808 173.491603 2.23927846 0.223029 136 79 4108 SRP SRP yes 875 431 443 110.074354 334.604909 222.3396315 2.347016882 0.213994 136 80 18008 YLR287C intron no 530 341 358 41.750553 327.089604 184.4200785 2.265808203 -0.140238 136 81 9374 RUF1 RUF1 yes 750 446 462 33.948989 304.205951 169.07747 2.228085741 0.013912 136 82 11691 "rRNA(18S,5.8S,25S)" 25S yes 7956 5341 5359 1729.867613 5028.30087 3379.084242 3.528799019 -1.402297 136 83 19399 YPR063C intron no 186 61 78 40.544474 295.738615 168.1415445 2.225675032 0.134773 136 84 16248 YDR397C 5_exon no 192 1 20 30.284095 314.403437 172.343766 2.236395579 -0.138026 136 85 18247 YML034W exon/intron no 226 41 55 85.882981 343.423152 214.6530665 2.331737097 0.004378 136 86 17028 YGR183C 5_exon no 313 1 18 32.093688 300.901222 166.497455 2.221407599 0.003395 136 87 11184 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2806 2819 71.705629 318.804613 195.255121 2.290602433 0.091698 136 88 8786 LSR1 / U2 RNA U2 yes 1375 571 590 31.433491 310.170653 170.802072 2.232493135 -0.074172 136 89 5497 snR32 snR32 yes 388 146 165 27.064647 311.216072 169.1403595 2.228247249 -0.254428 136 90 8784 LSR1 / U2 RNA U2 yes 1375 561 580 28.626705 275.021654 151.8241795 2.181340943 -0.002605 136 91 6671 snR48 3_flank no 313 28.265826 307.721319 167.9935725 2.225292666 -0.171917 136 92 428 Asp1 AspGTC_i 5_flank no 271 26.11184 304.087014 165.099427 2.217745566 -0.279256 136 93 772 Gln4 GlnTTG_iii 3_flank no 272 37.403375 294.470528 165.9369515 2.219943107 0.134417 136 94 4388 telomerase RNA telomerase yes 1501 976 995 26.101482 288.35981 157.230646 2.196537199 -0.214134 136 95 7005 snR60 3_flank no 304 35.949532 305.744021 170.8467765 2.232606789 0.025156 136 96 172 Arg2 ArgACG_ii 5_flank no 273 34.50787 305.981473 170.2446715 2.231073528 0.00629 136 97 4237 telomerase RNA telomerase yes 1501 221 238 35.066053 286.226174 160.6461135 2.205870223 0.177876 136 98 15168 MT_Val 3_flank no 276 196 222 31.581872 315.822891 173.7023815 2.239805773 -0.108632 136 99 6801 snR52 5_flank no 292 29.94053 338.822493 184.3815115 2.265717371 -0.304452 136 100 2954 Ser1 SerAGA_i tRNA yes 283 1 13 135.293669 319.113563 227.203616 2.356415239 0.45833 136 101 6152 snR39B 3_flank no 296 30.349776 273.806573 152.0781745 2.182066891 0.094108 136 102 16427 YER074W intron no 566 101 117 30.416229 309.499538 169.9578835 2.230341314 -0.104536 136 103 7859 snoRNA cluster1 intergenic no 1574 1091 1110 30.424134 274.066891 152.2455125 2.1825445 0.096644 136 104 2689 Pro4 ProTGG_iii 3_flank no 302 30.393586 304.473729 167.4336575 2.223842764 -0.075171 137 2 16031 YDL191W intron no 591 81 96 41.989753 323.236761 182.613257 2.261532302 -0.106922 137 3 19887 Positive Control 3 no 21 NA #VALUE! 35.64682 264.498615 150.0727175 2.176301747 0.35045 137 4 3859 RNaseP RNaseP yes 569 261 277 35.474836 296.727112 166.100974 2.220372179 0.093632 137 5 5487 snR32 snR32 yes 388 96 112 121.585805 390.720087 256.152946 2.408499355 -0.056132 137 6 16701 YGL031C intron no 556 161 178 33.131787 321.632728 177.3822575 2.248910178 -0.133844 137 7 21523 copy of SH3384 no 272 32.974527 301.096436 167.0354815 2.222808733 0.027244 137 8 4630 snR3 snR3 yes 395 66 81 38.739736 295.263047 167.0013915 2.22272009 0.135113 137 9 10451 RUF8 RUF8 yes 1151 181 199 30.753217 312.728415 171.740816 2.234873522 -0.112139 137 10 21935 copy of SH19618 no 401 31.632917 305.958152 168.7955345 2.227360953 -0.042391 137 11 9869 RUF5-1 RUF5-1 yes 975 151 167 32.520468 294.211085 163.3657765 2.213161081 0.058587 137 12 19630 RNA14 2.2 RNA14 2.2 yes 401 101 118 34.377855 315.276034 174.8269445 2.242608367 -0.069225 137 13 2436 Phe5 PheGAA_v 5_flank no 291 34.28059 314.744986 174.512788 2.241827257 -0.066232 137 14 966 Gly1 GlyCCC_i 3_flank no 272 30.308698 299.455292 164.881995 2.217173234 -0.047492 137 15 20158 YDL130W spliced yes 40 5 21 34.998288 276.718 155.858144 2.1927295 0.248125 137 16 7489 snR71 snR71 yes 290 61 77 52.172794 336.983253 194.5780235 2.289093788 -0.165165 137 17 4577 U3b (snR17b) U3b yes 662 441 457 56.783645 399.02682 227.9052325 2.357754296 -0.559647 137 18 10774 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 756 776 31.769402 282.36982 157.069611 2.196092168 0.109823 137 19 5308 snR30 snR30 yes 801 391 407 35.563217 283.637128 159.6001725 2.203033356 0.206162 137 20 2858 Pro7 ProTGG_vi tRNA/3_flank no 303 74.144429 338.222297 206.183363 2.314253619 -0.035902 137 21 7132 snR63 snR63 yes 455 166 182 32.075299 274.441374 153.2583365 2.185424107 0.172266 137 22 6538 snR46 snR46/3_flank no 397 32.425071 303.637653 168.031362 2.225390348 -0.002546 137 23 13801 MT_COB intronic no 7308 1201 1220 30.90908 309.700919 170.3049995 2.231227397 -0.088949 137 24 16943 YGR027C intron no 412 221 237 31.38036 287.14315 159.261755 2.202111497 0.066093 137 25 6456 snR45 snR45 yes 372 126 145 29.817569 310.780981 170.299275 2.231212799 -0.132901 137 26 21 Ala1 AlaAGC tRNA yes 273 1 13 403.588421 744.239438 573.9139295 2.758846766 -0.124828 137 27 15266 MT_9S 9S yes 701 166 194 28.397108 289.4202 158.908654 2.201147549 -0.083069 137 28 15803 YDL061C intron no 509 201 213 75.743072 349.316752 212.529912 2.327420062 -0.102947 137 29 14624 MT_21S Sce1 no 4639 3571 3593 28.626582 310.265531 169.4460565 2.229031466 -0.17241 137 30 21731 copy of SH12131 no 7956 39.059586 273.430948 156.245267 2.193806871 0.335557 137 31 19489 YPT1 YPT1 yes 402 81 95 30.664255 293.648447 162.156351 2.209933963 0.000741 137 32 13657 MT_ATP6 ATP6 yes 980 661 678 31.615231 289.431785 160.523508 2.205538642 0.059263 137 33 7098 snR63 5_flank/snR63 no 455 40.813747 327.999127 184.406437 2.265776077 -0.151086 137 34 21002 YML085C spliced yes 40 25 40 46.825998 311.152189 178.9890935 2.252826569 0.014736 137 35 17027 YGR148C 3_exon no 479 461 477 34.245552 282.02367 158.134611 2.199026935 0.190453 137 36 8400 snoRNA cluster 5 snR190 yes 586 166 182 36.078215 290.858469 163.468342 2.213433658 0.149983 137 37 15220 MT_COX3 cox3 no 1010 721 738 33.827391 309.891722 171.8595565 2.235173687 -0.033338 137 38 13982 MT_COB intronic no 7308 3916 3928 33.617399 267.621385 150.619392 2.17788089 0.267632 137 39 17086 YHL001W intron no 498 101 115 45.460453 314.036565 179.748509 2.254665297 -0.016407 137 40 934 Gly1 GlyCCC_i 5_flank no 272 31.252887 307.073546 169.1632165 2.228305934 -0.061712 137 41 21529 copy of SH3749 no 274 29.133641 306.532446 167.8330435 2.22487747 -0.131788 137 42 20986 YML067C spliced yes 40 9 26 34.954882 304.557438 169.75616 2.229825543 0.023148 137 43 4423 telomerase RNA telomerase yes 1501 1151 1173 32.906591 284.352654 158.6296225 2.200384291 0.133664 137 44 15000 MT_COX 2; ORF1 COX2 no 2427 601 618 30.912548 274.319716 152.616132 2.183600442 0.120162 137 45 6328 snR42 3_flank no 551 44.750074 344.561972 194.656023 2.289267846 -0.265638 137 46 8197 snoRNA cluster 3; intergenic no 743 496 513 29.009086 286.299474 157.65428 2.197705765 -0.035504 137 47 1591 Leu4 LeuCAA_iv 3_flank no 314 46.903254 289.795158 168.349206 2.226211072 0.2084 137 48 6382 snR43 snR43 yes 409 151 170 31.117395 293.742253 162.429824 2.210665774 0.015471 137 49 7805 snoRNA cluster1 snR75/intergenic no 1574 821 840 30.195569 316.587503 173.391536 2.239027894 -0.153829 137 50 1670 Leu6 LeuGAG 5_flank no 282 31.260226 287.590703 159.4254645 2.202557691 0.05922 137 51 1587 Leu4 LeuCAA_iv tRNA/3_flank no 314 29.359985 266.930121 148.145053 2.170687154 0.07646 137 52 6999 snR60 snR60 yes 304 76 92 31.48497 279.476462 155.480716 2.191676532 0.119395 137 53 11641 "rRNA(18S,5.8S,25S)" 25S yes 7956 5091 5104 1398.994058 3536.8266 2467.910329 3.392329376 -1.101465 137 54 5888 snR35 3_flank no 740 83.848511 312.705925 198.277218 2.297272817 0.212108 137 55 11257 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3171 3186 88.445321 316.18671 202.3160155 2.306030263 0.21404 137 56 4557 U3b (snR17b) U3b yes 662 341 358 30.239741 271.733818 150.9867795 2.178938922 0.098583 137 57 3925 RNase MRP RNaseMRP yes 540 41 62 32.414037 327.058709 179.736373 2.254635974 -0.184256 137 58 15419 YBL059W intron/exon no 169 101 121 32.461508 321.800031 177.1307695 2.248294009 -0.143591 137 59 12383 5S rRNA NTS2 no 1420 871 887 34.51852 279.323922 156.921221 2.195681679 0.216454 137 60 2369 Phe3 PheGAA_iii 3_flank no 291 46.89978 329.017985 187.9588825 2.274062854 -0.132258 137 61 8745 LSR1 / U2 RNA U2 yes 1375 366 382 61.394949 306.555516 183.9752325 2.26475936 0.129518 137 62 19400 YPR063C intron no 186 81 98 30.303956 301.192949 165.7484525 2.219449482 -0.058308 137 63 12739 MT_COX1 ai1 no 13084 286 303 32.333494 294.37132 163.352407 2.213125538 0.051564 137 64 19102 YOR312C intron no 507 261 280 28.172416 306.75519 167.463803 2.22392095 -0.172873 137 65 11131 "rRNA(18S,5.8S,25S)" 18S yes 7956 2541 2558 812.110662 1723.813697 1267.96218 3.1031063 -0.67394 137 66 2504 Pro1 ProAGG tRNA yes 272 11 28 33.972326 294.242789 164.1075575 2.215128582 0.096491 137 67 15465 YBL087C intron no 604 461 480 31.65675 298.950465 165.3036075 2.218282331 0.001056 137 68 8222 snoRNA cluster 3; snR51 yes 743 621 642 27.357416 300.277731 163.8175735 2.214360489 -0.190066 137 69 8206 snoRNA cluster 3; intergenic/snR51 no 743 541 565 31.044922 273.712657 152.3787895 2.182924519 0.129751 137 70 5886 snR35 3_flank no 740 60.426545 320.600213 190.513379 2.27992548 0.010577 137 71 16465 YER093C intron no 175 101 117 42.457383 284.158092 163.3077375 2.213006762 0.250593 137 72 7147 snR63 snR63/3_flank no 455 28.734578 306.438542 167.58656 2.224239186 -0.145626 137 73 12295 5S rRNA NTS2 no 1420 431 447 36.619915 285.839067 161.229491 2.207444483 0.199174 137 74 7499 snR71 3_flank no 290 42.64882 293.454578 168.051699 2.225442908 0.161056 137 75 18211 YML025C 5_exon no 199 21 42 30.951718 325.157728 178.054723 2.250553498 -0.188964 137 76 20369 YER133W spliced yes 40 17 36 35.028138 314.799199 174.9136685 2.242823748 -0.057725 137 77 4338 telomerase RNA telomerase yes 1501 726 745 31.206056 286.534615 158.8703355 2.201042813 0.064182 137 78 18668 YNL112W intron no 1102 541 558 40.385074 297.964149 169.1746115 2.228335188 0.113466 137 79 7100 snR63 snR63 yes 455 6 26 29.578049 295.111404 162.3447265 2.210438186 -0.046069 137 80 7924 snoRNA cluster1 snR72 yes 1574 1416 1435 44.029161 298.771939 171.40055 2.234012211 0.115716 137 81 10124 RUF6 RUF6 yes 1251 466 482 32.070513 287.93084 160.0006765 2.204121819 0.083766 137 82 8852 LSR1 / U2 RNA U2 yes 1375 901 917 557.688732 712.688177 635.1884545 2.802902596 0.327476 137 83 16435 YER074W intron no 566 261 282 30.335057 325.241895 177.788476 2.249903607 -0.198672 137 84 17651 YJR145C intron no 356 261 280 30.352662 298.618359 164.4855105 2.216127647 -0.040825 137 85 2380 Phe4 PheGAA_iv 5_flank no 291 30.257861 302.659292 166.4585765 2.221306176 -0.068839 137 86 6875 snR56 snR56 yes 288 6 28 157.756351 429.005427 293.380889 2.46743182 -0.044499 137 87 19681 SIR1 2.4 SIR1 2.4 yes 401 341 355 35.819598 280.039752 157.929675 2.198463742 0.24068 137 88 17453 YIL148W intron no 534 161 180 29.368187 295.631443 162.499815 2.210852871 -0.0591 137 89 2048 Lys4 LysTTT_ii 5_flank no 296 30.92186 303.602864 167.262362 2.223398225 -0.051903 137 90 10890 "rRNA(18S,5.8S,25S)" 18S yes 7956 1336 1353 15373.44631 12850.62734 14112.03682 4.149589701 -0.292612 137 91 17725 YKL156W intron no 450 81 96 33.9794 295.301518 164.640459 2.216536568 0.087701 137 92 4051 SRP SRP yes 875 146 158 84.393059 298.072212 191.2326355 2.28156201 0.330227 137 93 9738 RUF4 RUF4 yes 988 466 483 37.490358 311.992355 174.7413565 2.242395703 -0.021868 137 94 17808 YKR057W 5_exon no 422 21 38 81.124586 325.593996 203.359291 2.308264019 0.099155 137 95 9404 RUF1 3_flank no 750 38.098631 339.137473 188.618052 2.275583255 -0.252491 137 96 4586 U3b (snR17b) 3_flank no 662 28.860509 295.780161 162.320335 2.21037293 -0.086864 137 97 1886 Leu9 LeuTAG_ii 3_flank no 301 31.322575 275.981833 153.652204 2.186538794 0.132592 137 98 17799 YKL190W 5_exon no 176 1 13 79.622198 281.346008 180.484103 2.256438955 0.443854 137 99 13137 MT_COX1 ai3/intronic no 13084 6256 6280 32.154987 391.053409 211.604198 2.325524279 -0.666972 137 100 18344 YML124C intron no 398 201 220 34.459051 303.356366 168.9077085 2.22764947 0.026998 137 101 10591 RUF8 RUF8 yes 1151 881 898 32.512364 268.865951 150.6891575 2.178082005 0.224188 137 102 11490 "rRNA(18S,5.8S,25S)" 25S yes 7956 4336 4353 40838.40041 10664.51152 25751.45597 4.410801789 1.212186 137 103 3157 Ser5 SerTGA 5_flank no 282 34.58795 312.773945 173.6809475 2.23975218 -0.047011 137 104 18004 YLR287C intron no 530 261 279 34.522753 335.142178 184.8324655 2.266778257 -0.229388 138 2 20553 YHL001W spliced yes 40 1 20 35.947595 410.112961 223.030278 2.348363826 -0.779174 138 3 9422 RUF2 5_flank no 468 35.755974 286.105753 160.9308635 2.206639342 0.186984 138 4 11790 "rRNA(18S,5.8S,25S)" 25S yes 7956 5836 5851 6762.599697 4661.923299 5712.261498 3.756808081 0.395311 138 5 16279 YDR447C intron no 414 261 278 29.359776 272.363912 150.861844 2.178579412 0.049614 138 6 14829 MT_Lys; Arg1; Gly 3_flank no 682 616 640 29.220573 314.862246 172.0414095 2.235632992 -0.178042 138 7 14410 MT_21S 21S_rRNA3 yes 4639 361 380 250.189603 482.126827 366.158215 2.563668782 0.141481 138 8 7170 snR64 5_flank no 301 56.751053 329.014488 192.8827705 2.285293435 -0.077325 138 9 13752 MT_COB exon1 yes 7308 466 483 32.864512 294.645604 163.755058 2.214194723 0.066859 138 10 9760 RUF4 RUF4 yes 988 576 592 40.67849 287.900574 164.289532 2.215609892 0.210126 138 11 18740 YNL162W intron no 612 121 142 28.847625 291.144109 159.995867 2.204108764 -0.066521 138 12 806 Glu1 GluCTC tRNA yes 272 46 58 52.376672 292.202953 172.2898125 2.236259598 0.208116 138 13 1678 Leu6 LeuGAG 5_flank no 282 30.695245 327.165433 178.930339 2.252683985 -0.207622 138 14 16265 YDR424C 3_exon no 196 161 180 28.659549 308.963204 168.8113765 2.227401711 -0.163463 138 15 13213 MT_COX1 ai4 no 13084 7396 7417 29.519619 291.189785 160.354702 2.205081699 -0.03095 138 16 19155 YPL075W intron no 851 621 637 36.162882 291.042233 163.6025575 2.213790088 0.149393 138 17 2081 Lys4 LysTTT_ii tRNA yes 296 48 60 90.026155 354.733895 222.380025 2.347095775 -0.0431 138 18 16338 YDR500C exon/intron no 439 41 53 39.777826 304.849646 172.313736 2.236319899 0.04825 138 19 2876 Pro8 ProTGG_vii 5_flank no 305 33.988325 268.399924 151.1941245 2.179534915 0.273742 138 20 19793 Negative Control no 60 NA #VALUE! 37.938916 311.271642 174.605279 2.24205737 -0.01432 138 21 17375 YIL052C intron no 572 401 416 49.86321 308.266807 179.0650085 2.253010728 0.054764 138 22 6271 snR42 snR42 yes 551 136 152 32.681324 285.480088 159.080706 2.20161751 0.119205 138 23 1625 Leu5 LeuCAA_v 5_flank/tRNA no 315 33.093858 306.421524 169.757691 2.229829459 -0.014585 138 24 2324 Phe3 PheGAA_iii 5_flank no 291 33.555512 302.722246 168.138879 2.225668148 0.021167 138 25 21872 copy of SH18602 no 549 31.976912 316.850798 174.413855 2.241580981 -0.111515 138 26 17333 YIL018W intron no 500 61 80 29.267 314.41251 171.839755 2.235123645 -0.173752 138 27 6929 snR58 snR58 yes 296 6 25 32.632148 299.325432 165.97879 2.220052594 0.030437 138 28 8323 snoRNA cluster4 intergenic no 638 401 422 30.727427 304.585244 167.6563355 2.224419969 -0.064438 138 29 16143 YDR092W intron no 368 141 158 32.899127 295.459533 164.17933 2.215318479 0.062879 138 30 20713 YJL041W spliced yes 40 9 28 28.732864 301.792702 165.262783 2.218175062 -0.120549 138 31 7161 snR63 3_flank no 455 30.784595 297.788287 164.286441 2.215601721 -0.020945 138 32 5165 snR13 5_flank no 324 39.057624 330.344533 184.7010785 2.266469431 -0.176894 138 33 5229 snR30 5_flank/snR30 no 801 34.765938 283.636755 159.2013465 2.201946737 0.195701 138 34 11409 "rRNA(18S,5.8S,25S)" 25S yes 7956 3931 3944 45.000817 306.59602 175.7984185 2.245014964 0.047918 138 35 12798 MT_COX1 ai1 no 13084 1171 1192 29.305211 336.254885 182.780048 2.261928787 -0.296049 138 36 6620 snR48 5_flank no 313 36.307782 306.772442 171.540112 2.234365689 0.020963 138 37 2038 Lys3 LysTTT_i 3_flank no 296 50.406748 348.001442 199.204095 2.299298262 -0.25867 138 38 19566 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 21 37 35.856854 292.228249 164.0425515 2.214956516 0.135823 138 39 3460 Trp1 TrpCCA 3_flank no 306 38.655015 340.6163 189.6356575 2.277920002 -0.262361 138 40 16569 YER133W intron no 625 541 563 33.414924 305.674121 169.5445225 2.229283764 -0.004552 138 41 16365 YEL012W intron no 223 141 160 29.257738 294.283155 161.7704465 2.208899184 -0.058867 138 42 8288 snoRNA cluster4 intergenic no 638 226 245 33.082986 323.282386 178.182686 2.250865501 -0.147097 138 43 2061 Lys4 LysTTT_ii 5_flank no 296 36.929771 314.901006 175.9153885 2.245303832 -0.049172 138 44 7691 snoRNA cluster1 intergenic no 1574 251 267 46.768849 290.962347 168.865598 2.227541182 0.196966 138 45 1636 Leu5 LeuCAA_v tRNA-intron no 315 i8 i24 30.960685 294.25791 162.6092975 2.211145374 0.006969 138 46 7852 snoRNA cluster1 intergenic no 1574 1056 1075 34.960113 351.458653 193.209383 2.286028214 -0.361061 138 47 9093 snR14 / U4 RNA U4 yes 360 81 93 114.892724 367.314949 241.1038365 2.382204121 0.036685 138 48 17411 YIL106W intron no 185 61 80 33.151744 325.8862 179.518972 2.254110353 -0.166063 138 49 3774 Val4 ValTAC 3_flank no 274 33.228013 265.147739 149.187876 2.173733531 0.272563 138 50 16920 YGL251C intron no 252 161 178 33.296857 308.78698 171.0419185 2.233102559 -0.031058 138 51 707 Gln3 GlnTTG_ii tRNA/3_flank no 272 33.37717 288.09409 160.73563 2.206112157 0.124423 138 52 3083 Ser3 SerCGA 3_flank no 301 31.490391 320.528837 176.009614 2.245536391 -0.146386 138 53 1000 Gly2 GlyCCC_ii 5_flank/tRNA no 272 35.68455 312.631351 174.1579505 2.240943305 -0.03296 138 54 14143 MT_COB intronic no 7308 6331 6350 33.888329 325.082014 179.4851715 2.254028574 -0.150857 138 55 18616 YNL069C intron/exon no 549 481 500 34.124496 282.858634 158.491565 2.200006154 0.181313 138 56 8933 snR17a / U3a 5_flank no 690 32.273373 296.420599 164.346986 2.215761744 0.036847 138 57 13337 MT_COX1 ai5a no 13084 9256 9284 32.397828 317.412715 174.9052715 2.242802899 -0.110479 138 58 18125 YLR388W intron no 258 141 161 30.382317 300.793293 165.587805 2.219028349 -0.053166 138 59 17253 YHR097C intron/exon no 224 161 179 36.559395 318.418691 177.489043 2.249171548 -0.081131 138 60 13926 MT_COB bi3 no 7308 3076 3093 53.075122 339.97086 196.522991 2.293413365 -0.182926 138 61 12212 5S rRNA NTS2 no 1420 16 33 57.154132 308.40462 182.779376 2.26192719 0.091302 138 62 3332 Thr3 ThrTGT_i tRNA yes 272 6 22 32.310094 296.74017 164.525132 2.216232248 0.036051 138 63 3972 RNase MRP RNaseMRP yes 540 276 288 70.55923 315.38326 192.971245 2.285492599 0.111551 138 64 11872 "rRNA(18S,5.8S,25S)" 25S yes 7956 6246 6263 14995.65478 14432.06562 14713.8602 4.167726625 -0.516079 138 65 14913 MT_Tyr 5_flank/tRNA no 284 91 110 48.536994 355.380055 201.9585245 2.305262189 -0.324199 138 66 9188 snR7 U5 RNA U5/3_flank no 415 33.97981 299.617675 166.7987425 2.222192772 0.051846 138 67 17646 YJR145C intron no 356 161 181 29.687638 299.073941 164.3807895 2.215851062 -0.066765 138 68 5559 snR33 snR33 yes 383 81 97 49.502522 317.42803 183.465276 2.263553879 -0.024326 138 69 18985 YOR096W intron no 501 381 402 29.201019 309.167457 169.184238 2.2283599 -0.145135 138 70 3998 RNase MRP 3_flank no 540 31.007546 310.699483 170.8535145 2.232623917 -0.091555 138 71 11203 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2901 2918 54.670358 313.138255 183.9043065 2.264591899 0.038687 138 72 13248 MT_COX1 ai4 no 13084 7921 7943 27.016919 314.122823 170.569871 2.231902321 -0.26955 138 73 17264 YHR101C 3_exon no 187 161 178 60.848794 378.168913 219.5088535 2.341452041 -0.398258 138 74 8020 snoRNA cluster 2 snR55 yes 739 336 353 88.790919 357.60125 223.1960845 2.348686572 -0.069761 138 75 3520 Tyr1 TyrGTA_i 3_flank no 289 43.245863 285.973558 164.6097105 2.216455451 0.234479 138 76 20857 YLR078C spliced yes 40 5 20 2445.509833 10757.91628 6601.713057 3.819656644 -2.238035 138 77 13143 MT_COX1 intronic no 13084 6346 6362 51.658067 324.630445 188.144256 2.274490964 -0.071433 138 78 16409 YER056C intron no 497 241 260 31.658696 329.23534 180.447018 2.256349709 -0.210412 138 79 12955 MT_COX1 ai2 no 13084 3526 3550 28.803816 307.417376 168.110596 2.225595088 -0.148985 138 80 17005 YGR148C 5_exon no 479 21 35 84.280735 312.065989 198.173362 2.297045277 0.219524 138 81 3779 Val4 ValTAC 3_flank no 274 28.146582 313.192873 170.6697275 2.232156495 -0.207357 138 82 16083 YDR025W intron no 439 201 218 32.408236 306.093775 169.2510055 2.228531257 -0.020609 138 83 17983 YLR275W 5_exon no 190 21 38 32.48787 293.035633 162.7617515 2.211552355 0.064911 138 84 9625 RUF4 5_flank no 988 85.352955 332.149015 208.750985 2.319628533 0.079313 138 85 15691 YBR191W 3_exon no 488 461 477 32.317547 284.692541 158.505044 2.200043087 0.112603 138 86 14013 MT_COB intron/exon4 no 7308 4381 4402 27.978998 294.390083 161.1845405 2.207323385 -0.128789 138 87 12856 MT_COX1 ai1 no 13084 2041 2064 29.685985 337.270972 183.4784785 2.26358513 -0.296645 138 88 16941 YGR027C intron no 412 181 195 57.346873 306.108675 181.727774 2.259421307 0.111645 138 89 15252 MT_fMet 3_flank no 274 211 235 26.931701 314.832949 170.882325 2.232697144 -0.277466 138 90 21466 copy of SH1002 no 272 51.891591 308.992219 180.441905 2.256337403 0.058352 138 91 3074 Ser3 SerCGA tRNA yes 301 47 59 37.848172 284.586273 161.2172225 2.207411435 0.22369 138 92 21899 copy of SH19199 no 601 49.166343 381.371946 215.2691445 2.332981785 -0.501918 138 93 9909 RUF5-1 RUF5-1 yes 975 351 370 41.5022 310.370872 175.936536 2.245356037 0.002826 138 94 233 Arg3 ArgCCG tRNA yes 272 21 36 34.066035 282.686944 158.3764895 2.199690712 0.18064 138 95 4623 snR3 snR3 yes 395 31 48 34.475342 307.71404 171.094691 2.233236534 -0.008054 138 96 5054 snR10 3_flank no 445 29.076461 308.112607 168.594534 2.22684349 -0.143306 138 97 15263 MT_9S 9S yes 701 121 142 31.54316 317.735564 174.639362 2.242142136 -0.124062 138 98 7687 snoRNA cluster1 intergenic no 1574 231 250 29.951522 301.961858 165.95669 2.219994764 -0.075218 138 99 10492 RUF8 RUF8 yes 1151 386 403 34.376861 307.969089 171.172975 2.233435199 -0.011286 138 100 21024 YMR079W spliced yes 40 17 34 103.823867 415.514707 259.669287 2.414420585 -0.303869 138 101 6668 snR48 3_flank no 313 34.679021 345.073674 189.8763475 2.278470869 -0.310571 138 102 9352 RUF1 RUF1 yes 750 336 354 34.665399 306.774446 170.7199225 2.232284205 0.00178 138 103 8435 snoRNA cluster 5 intergenic/snR128 no 586 341 363 30.417155 319.158142 174.7876485 2.24251074 -0.161084 138 104 19074 YOR293W intron no 537 241 255 59.834774 329.071184 194.452979 2.288814601 -0.058876 139 2 7778 snoRNA cluster1 intergenic no 1574 686 702 45.433398 422.367721 233.9005595 2.369031261 -0.788261 139 3 14265 MT_VAR1 VAR1 yes 1467 181 207 29.721178 362.587744 196.154461 2.292598189 -0.475029 139 4 18349 YML124C intron no 398 301 315 35.605274 283.880227 159.7427505 2.203421158 0.204534 139 5 10558 RUF8 RUF8 yes 1151 716 732 57.590063 315.651374 186.6207185 2.270959857 0.033434 139 6 5387 snR31 snR31 yes 425 1 18 41.179408 292.098344 166.638876 2.221776328 0.170798 139 7 13524 MT_COX1 intronic no 13084 12061 12085 31.073588 339.251595 185.1625915 2.26755325 -0.2922 139 8 3671 Val2 ValAAC_ii 3_flank no 274 29.015288 295.86488 162.440084 2.210693205 -0.078935 139 9 7576 snR189 5_flank no 389 39.821327 295.629051 167.725189 2.22459829 0.134166 139 10 16788 YGL103W intron no 611 441 457 34.868129 337.793865 186.330997 2.270285108 -0.250499 139 11 860 Glu2 GluTTC_i tRNA/3_flank no 272 36.840753 287.341594 162.0911735 2.209759366 0.188707 139 12 21453 copy of SH379 no 274 34.863146 280.427753 157.6454495 2.197681439 0.219566 139 13 21625 copy of SH7730 no 1574 28.934585 275.51007 152.2223275 2.182478358 0.011654 139 14 7818 snoRNA cluster1 intergenic no 1574 886 903 32.798922 303.47435 168.136636 2.225662354 0.005592 139 15 18197 YML024W intron no 498 241 258 30.745771 308.111744 169.4287575 2.228987126 -0.085009 139 16 13036 MT_COX1 ai2 no 13084 4741 4763 32.588595 306.192773 169.390684 2.228889522 -0.01911 139 17 417 Asp1 AspGTC_i 5_flank no 271 28.596999 262.514428 145.5557135 2.163029257 0.052223 139 18 20861 YLR078C spliced yes 40 21 37 47.998333 318.56587 183.2821015 2.263120056 -0.04135 139 19 9159 snR7 U5 RNA U5 yes 415 66 85 28.533888 300.53363 164.533759 2.21625502 -0.125779 139 20 3638 Val2 ValAAC_ii 5_flank no 274 30.551746 300.817567 165.6846565 2.219282292 -0.047508 139 21 15649 YBR189W intron no 513 121 138 30.727217 301.483229 166.105223 2.220383289 -0.045598 139 22 5977 snR36 snR36/3_flank no 555 38.898205 347.778871 193.338538 2.28631843 -0.31855 139 23 10415 RUF8 RUF8 yes 1151 1 18 29.350633 300.451137 164.900885 2.217222986 -0.087145 139 24 11308 "rRNA(18S,5.8S,25S)" ITS2/25S no 7956 3426 3446 29.715846 290.149148 159.932497 2.203936718 -0.015889 139 25 427 Asp1 AspGTC_i 5_flank no 271 32.122323 298.516351 165.319337 2.218323655 0.018977 139 26 8489 snR19 / U1 RNA 5_flank no 868 41.778432 284.253357 163.0158945 2.212229951 0.248185 139 27 5270 snR30 snR30 yes 801 201 217 38.989396 284.077671 161.5335335 2.208262693 0.240411 139 28 2170 Met2 MetCAT_ii 5_flank no 272 32.913232 310.807474 171.860353 2.235175699 -0.051974 139 29 19886 Positive Control 2 no 21 NA #VALUE! 60.434067 319.718566 190.0763165 2.278928007 0.017585 139 30 15167 MT_Val 3_flank no 276 181 205 28.833958 313.182519 171.0082385 2.233017033 -0.182101 139 31 13366 MT_COX1 intronic no 13084 9691 9713 30.904919 308.935062 169.9199905 2.230244475 -0.084531 139 32 5932 snR36 snR36 yes 555 116 132 60.304943 316.925135 188.615039 2.275576318 0.03901 139 33 3358 Thr3 ThrTGT_i 3_flank no 272 28.67931 281.216285 154.9477975 2.190185407 -0.029413 139 34 13521 MT_COX1 intronic no 13084 12016 12037 30.656281 312.5867 171.6214905 2.234571669 -0.114601 139 35 7619 snR189 snR189 yes 389 166 181 41.940421 293.535143 167.737782 2.224630896 0.15876 139 36 2020 Lys3 LysTTT_i intron/tRNA no 296 i9 39 30.371638 288.016094 159.193866 2.20192633 0.026386 139 37 7616 snR189 snR189 yes 389 151 169 32.249217 299.398619 165.823918 2.219647172 0.01766 139 38 4344 telomerase RNA telomerase yes 1501 756 777 30.014899 309.949416 169.9821575 2.230403337 -0.12108 139 39 21434 oligo-dT; WTP_216 no 32713.03786 18595.07213 25654.05499 4.409156021 0.017145 139 40 11005 "rRNA(18S,5.8S,25S)" 18S yes 7956 1911 1928 21491.23128 14641.54976 18066.39052 4.256871394 -0.100043 139 41 16324 YDR471W intron no 484 241 255 37.444672 282.911757 160.1782145 2.204603448 0.233836 139 42 9471 RUF2 RUF2 yes 468 196 212 43.214994 296.811398 170.013196 2.230482632 0.131117 139 43 18767 YNL246W intron no 195 61 75 37.050353 293.696792 165.3735725 2.218466108 0.136993 139 44 11361 "rRNA(18S,5.8S,25S)" 25S yes 7956 3691 3708 34.963315 318.462872 176.7130935 2.24726873 -0.087088 139 45 18439 YMR142C intron no 502 281 297 34.932509 285.857997 160.395253 2.205191511 0.179477 139 46 6337 snR43 5_flank no 409 34.968143 314.085442 174.5267925 2.241862107 -0.052825 139 47 150 Arg1 ArgACG_i 3_flank no 273 29.111983 344.830322 186.9711525 2.271774605 -0.359508 139 48 8689 LSR1 / U2 RNA U2 yes 1375 86 107 31.167747 268.595039 149.881393 2.175747721 0.16102 139 49 2807 Pro6 ProTGG_v 3_flank no 302 35.213727 297.953869 166.583798 2.221632759 0.080377 139 50 18921 YOL121C intron no 490 81 99 31.291184 301.628809 166.4599965 2.221309881 -0.027494 139 51 11578 "rRNA(18S,5.8S,25S)" 25S yes 7956 4776 4789 57.421703 309.631019 183.526361 2.263698453 0.082415 139 52 8029 snoRNA cluster 2 snR55 yes 739 381 397 31.439305 312.086639 171.762972 2.234929546 -0.085317 139 53 10010 RUF5-1 3_flank no 975 43.676783 326.470246 185.0735145 2.267344272 -0.128615 139 54 13984 MT_COB intronic no 7308 3946 3958 18120.43903 9147.120584 13633.77981 4.134616276 0.473856 139 55 12380 5S rRNA NTS2 no 1420 856 868 80.170012 322.671169 201.4205905 2.304103865 0.115027 139 56 21184 YOL047C spliced yes 40 13 30 32.219596 306.484245 169.3519205 2.228790126 -0.026365 139 57 18977 YOR096W intron no 501 221 239 34.427337 296.668976 165.5481565 2.218924349 0.081706 139 58 5127 snR11 snR11 yes 458 236 252 32.437916 293.262861 162.8503885 2.211788799 0.061877 139 59 18885 YOL047C intron no 163 61 77 36.573073 268.140703 152.356888 2.182862093 0.352057 139 60 9459 RUF2 RUF2 yes 468 136 155 28.294853 290.946865 159.620859 2.203089644 -0.09568 139 61 15755 YCR031C intron no 407 181 198 30.31794 296.320661 163.3193005 2.213037511 -0.027799 139 62 9358 RUF1 RUF1 yes 750 366 385 30.293041 305.336853 167.814947 2.22483064 -0.083843 139 63 14042 MT_COB bi4 no 7308 4816 4837 30.272857 325.790336 178.0315965 2.250497086 -0.203917 139 64 10791 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 841 861 34.343512 269.605027 151.9742695 2.181770065 0.276349 139 65 7022 snR62 5_flank no 300 36.304368 289.667742 162.986055 2.212150448 0.162708 139 66 13824 MT_COB bi2 no 7308 1546 1565 32.053934 298.40766 165.230797 2.218090998 0.017422 139 67 21100 YNL050C spliced yes 40 1 22 29.823217 302.925128 166.3741725 2.221085908 -0.085564 139 68 4511 U3b (snR17b) U3b yes 662 111 127 41.698329 291.979259 166.838794 2.222297042 0.173081 139 69 7376 snR68 snR68 yes 336 101 117 65.620686 324.472792 195.046739 2.290138694 0.01106 139 70 17615 YJR021C intron no 180 81 102 31.274682 290.417135 160.8459085 2.206410018 0.041696 139 71 9770 RUF4 RUF4 yes 988 626 638 86.075897 305.190414 195.6331555 2.29144246 0.283221 139 72 4647 snR3 snR3 yes 395 151 168 29.291532 295.611265 162.4513985 2.210723454 -0.06307 139 73 12603 MT_15S 15S yes 1848 796 818 29.393509 316.266241 172.829875 2.237618816 -0.180072 139 74 2050 Lys4 LysTTT_ii 5_flank no 296 29.516596 288.835573 159.1760845 2.201877817 -0.0203 139 75 8203 snoRNA cluster 3; intergenic no 743 526 540 32.653176 273.424624 153.0389 2.184801835 0.197745 139 76 16640 YFR024C intron no 218 141 157 82.531476 332.734784 207.63313 2.317296651 0.05702 139 77 769 Gln4 GlnTTG_iii 3_flank no 272 72.769113 305.417461 189.093287 2.276676111 0.203666 139 78 14748 MT_ORF11; Leu; Gln ORF11 yes 716 106 118 36.072633 273.606713 154.839673 2.189882245 0.300516 139 79 1756 Leu7 LeuTAA tRNA/3_flank no 284 30.100924 305.917081 168.0090025 2.225332553 -0.093982 139 80 10260 RUF7 5_flank no 700 36.429047 299.326255 167.877651 2.224992884 0.083069 139 81 9757 RUF4 RUF4 yes 988 561 577 36.600702 289.420788 163.010745 2.212216232 0.168182 139 82 9544 RUF3 RUF3 yes 631 106 122 87.657075 337.092258 212.3746665 2.32710271 0.059059 139 83 12761 MT_COX1 ai1 no 13084 616 632 51.359387 306.837595 179.098491 2.253091927 0.074292 139 84 11074 "rRNA(18S,5.8S,25S)" 18S yes 7956 2256 2274 30.443465 275.672801 153.058133 2.184856412 0.089851 139 85 2670 Pro4 ProTGG_iii tRNA yes 302 16 33 36.449067 285.864215 161.156641 2.207248207 0.19702 139 86 884 Glu3 GluTTC_ii 5_flank no 272 75.224199 324.837014 200.0306065 2.301096452 0.067997 139 87 5416 snR31 snR31 yes 425 146 160 3172.152461 7814.568441 5493.360451 3.739838097 -1.388261 139 88 8149 snoRNA cluster 3; intergenic no 743 256 273 31.253642 275.286085 153.2698635 2.185456771 0.13253 139 89 18844 YNL312W intron no 208 61 76 107.266733 361.617426 234.4420795 2.370035565 0.023492 139 90 7321 snR66 3_flank no 286 30.496283 257.202083 143.849183 2.1579074 0.184896 139 91 1345 Ile3 IleTAT_ii tRNA yes 333 46 60 43.76755 298.103124 170.935337 2.232831853 0.121015 139 92 1354 Ile3 IleTAT_ii 3_flank no 333 34.948245 291.302015 163.12513 2.212520871 0.133041 139 93 3686 Val3 ValCAC 5_flank no 273 43.707364 315.195075 179.4512195 2.253946414 -0.032108 139 94 15339 YAL030W intron no 213 121 140 30.446705 280.550254 155.4984795 2.191726147 0.066663 139 95 6479 snR45 3_flank no 372 28.861153 307.298591 168.079872 2.225515709 -0.146197 139 96 773 Gln4 GlnTTG_iii 3_flank no 272 29.289633 292.482694 160.8861635 2.206518696 -0.049002 139 97 18697 YNL130C 5_exon no 541 21 35 33.767879 276.485683 155.126781 2.190686781 0.212299 139 98 18734 YNL162W 5_exon no 612 1 21 29.094488 292.814452 160.95447 2.206703042 -0.060899 139 99 3225 Thr1 ThrAGT 5_flank no 273 44.899485 304.615398 174.7574415 2.242435678 0.065374 139 100 6614 snR47 3_flank no 299 32.63647 292.483111 162.5597905 2.211013131 0.073151 139 101 20735 YJL189W spliced yes 40 21 37 30.602949 301.269005 165.935977 2.219940557 -0.04852 139 102 3860 RNaseP RNaseP yes 569 266 280 49.418825 266.526394 157.9726095 2.198581792 0.44543 139 103 20800 YKL157W spliced yes 40 17 35 34.619527 310.368909 172.494218 2.236774542 -0.027557 139 104 4238 telomerase RNA telomerase yes 1501 226 243 31.338033 319.609012 175.4735225 2.244211594 -0.141292 140 2 17801 YKL190W exon/intron no 176 41 60 30.016982 410.781792 220.399387 2.343210382 -0.810774 140 3 7941 snoRNA cluster1 3_flank no 1574 1501 1518 29.805006 353.381719 191.5933625 2.282380459 -0.410306 140 4 21531 copy of SH3751 no 274 33.627851 293.174322 163.4010865 2.21325494 0.100052 140 5 10373 RUF7 RUF7 yes 700 476 488 61.659261 325.174207 193.416734 2.286494046 -0.018034 140 6 16288 YDR450W exon/intron no 535 41 60 31.176274 275.173957 153.1751155 2.185188216 0.129221 140 7 2612 Pro3 ProTGG_ii tRNA yes 303 11 29 33.00636 294.603788 163.805074 2.21432735 0.071618 140 8 21344 YPR098C spliced yes 40 21 36 148.297021 379.369183 263.833102 2.421329284 0.158131 140 9 1918 Lys1 LysCTT_i tRNA yes 272 46 60 182.034199 454.712598 318.3733985 2.502936773 -0.036366 140 10 3366 Thr4 ThrTGT_ii 5_flank no 272 34.862289 327.878936 181.3706125 2.25856692 -0.167275 140 11 4001 RNase MRP 3_flank no 540 30.960561 288.587282 159.7739215 2.203505895 0.042792 140 12 6478 snR45 3_flank no 372 29.025303 283.076042 156.0506725 2.193265645 -0.019558 140 13 3957 RNase MRP RNaseMRP yes 540 201 216 34.954395 306.373356 170.6638755 2.232141604 0.008451 140 14 4833 snR8 5_flank no 390 36.907654 338.91946 187.913557 2.273958113 -0.254603 140 15 13720 MT_Glu (and 5_flank processing site for COB) 3_flank no 368 331 355 30.935687 331.933205 181.434446 2.258719743 -0.240146 140 16 2153 Met1 MetCAT_i 3_flank no 273 46.636194 387.734033 217.1851135 2.336830054 -0.561607 140 17 4483 U3b (snR17b) 5_flank no 662 36.689174 350.515382 193.602278 2.286910463 -0.348375 140 18 10950 "rRNA(18S,5.8S,25S)" 18S yes 7956 1636 1656 200.457598 516.447857 358.4527275 2.554431889 -0.200855 140 19 14352 MT_ORF9; ORF10 5_flank no 578 46 74 28.818826 304.987546 166.903186 2.222464627 -0.133831 140 20 14314 MT_VAR1 VAR1 yes 1467 916 938 28.895074 300.421031 164.6580525 2.216582974 -0.105735 140 21 14237 MT_Ser 5_flank no 290 31 43 44.877503 340.318946 192.5982245 2.284652279 -0.232231 140 22 17060 YGR214W intron no 555 341 358 33.245297 288.575025 160.910161 2.206583469 0.117218 140 23 13155 MT_COX1 intronic no 13084 6526 6551 33.570427 311.708902 172.6396645 2.237140583 -0.050945 140 24 12373 5S rRNA NTS2 no 1420 821 837 58.443316 308.505838 183.474577 2.263575895 0.097072 140 25 11690 "rRNA(18S,5.8S,25S)" 25S yes 7956 5336 5349 29021.16437 20985.74917 25003.45677 4.398000055 -0.330366 140 26 14882 MT_Ala tRNA yes 276 136 153 32.578572 319.83535 176.206961 2.246023061 -0.126967 140 27 14100 MT_COB bi4 no 7308 5686 5707 34.921787 318.396902 176.6593445 2.247136615 -0.087068 140 28 17078 YGR225W intron/exon no 193 141 158 35.108758 308.030062 171.56941 2.234439858 -0.003052 140 29 18465 YMR143W intron no 644 301 318 37.32214 296.130711 166.7264255 2.222004439 0.119623 140 30 1298 Ile2 IleTAT_i 3_flank no 333 31.038154 299.870089 165.4541215 2.21867759 -0.025206 140 31 8932 snR17a / U3a 5_flank no 690 31.027911 305.887797 168.457854 2.226491264 -0.062133 140 32 12233 5S rRNA NTS2 no 1420 121 136 47.858183 306.113234 176.9857085 2.247938199 0.063191 140 33 14206 MT_COB 3_flank no 7308 7276 7302 28.826227 311.860146 170.3431865 2.231324767 -0.174591 140 34 6799 snR52 5_flank no 292 30.833977 314.018372 172.4261745 2.236603193 -0.11698 140 35 12872 MT_COX1 ai1 no 13084 2281 2303 30.724317 320.252935 175.488626 2.244248974 -0.156897 140 36 17787 YKL186C 5_exon no 249 1 16 43.079734 278.489725 160.7847295 2.206244799 0.308221 140 37 21086 YMR292W spliced yes 40 21 37 42.869136 288.657289 165.7632125 2.219488155 0.207581 140 38 14230 MT_ATP9 3_flank no 431 346 372 32.327271 335.263506 183.7953885 2.264334611 -0.246598 140 39 19485 YPT1 YPT1 yes 402 1 17 59.875352 304.792949 182.3341505 2.260868018 0.135599 140 40 21442 TH294 - control cDNA - flipped; WTP_224 no 44.118265 305.768332 174.9432985 2.242897311 0.052512 140 41 13929 MT_COB bi3 no 7308 3121 3143 31.671944 315.856017 173.7639805 2.239959757 -0.107712 140 42 15663 YBR189W intron no 513 401 416 39.451706 298.644316 169.048011 2.228010065 0.10496 140 43 272 Arg4 ArgCCT 5_flank no 272 29.246317 290.622955 159.934636 2.203942526 -0.042808 140 44 5790 snR35 snR35 yes 740 136 150 29.102868 273.38218 151.242524 2.179673916 0.030989 140 45 3279 Thr2 ThrCGT 5_flank/tRNA no 272 64.748273 311.344659 188.046466 2.274265176 0.109302 140 46 19123 YPL031C 3_exon no 202 181 195 42.851619 296.21152 169.5315695 2.229250583 0.135464 140 47 6577 snR47 5_flank/snR47 no 299 31.038709 284.39079 157.7147495 2.19787231 0.072395 140 48 2166 Met2 MetCAT_ii 5_flank no 272 29.131203 279.633525 154.382364 2.188597687 0.002394 140 49 10443 RUF8 RUF8 yes 1151 141 156 57.092555 333.202119 195.147337 2.290362629 -0.107163 140 50 15035 MT_COX 2; ORF1 ORF1exon1 yes 2427 1126 1148 29.236596 319.735628 174.486112 2.241760866 -0.205748 140 51 9123 snR14 / U4 RNA 3_flank no 360 37.243778 317.492912 177.368345 2.248876114 -0.071302 140 52 13809 MT_COB bi2 no 7308 1321 1347 29.351806 318.404322 173.878064 2.240244796 -0.193959 140 53 16163 YDR129C 3_exon no 211 181 198 31.476746 289.028928 160.252837 2.204805727 0.057243 140 54 3311 Thr3 ThrTGT_i 5_flank no 272 37.72722 293.585455 165.6563375 2.219208055 0.145426 140 55 20045 YBR189W spliced yes 40 21 37 40.047234 296.028064 168.037649 2.225406597 0.130913 140 56 15175 MT_COX3 5_flank no 1010 46 74 34.190418 349.202708 191.696563 2.282614326 -0.345101 140 57 16482 YER102W intron no 460 281 297 42.635249 290.234102 166.4346755 2.221243814 0.19186 140 58 4809 snR5 3_flank no 404 32.440873 286.526366 159.4836195 2.202716083 0.104758 140 59 13688 MT_ORF 5 ORF5 yes 331 166 182 59.48772 317.828411 188.6580655 2.275675377 0.026944 140 60 14880 MT_Ala tRNA yes 276 106 126 28.359283 297.880076 163.1196795 2.212506359 -0.123506 140 61 2463 Phe5 PheGAA_v tRNA/3_flank no 291 30.409647 316.737206 173.5734265 2.239483237 -0.147322 140 62 12897 MT_COX1 intronic no 13084 2656 2670 34.530312 291.830294 163.180303 2.212667735 0.123582 140 63 16123 YDR064W intron no 639 381 399 40.731495 309.424237 175.077866 2.243231244 0.008797 140 64 942 Gly1 GlyCCC_i 5_flank no 272 34.497321 296.71891 165.6081155 2.219081615 0.082131 140 65 4537 U3b (snR17b) U3b yes 662 241 257 53.049189 343.521855 198.285522 2.297291005 -0.209969 140 66 1485 Leu2 LeuCAA_ii 3_flank no 314 30.192644 288.095938 159.144291 2.201791064 0.018301 140 67 21365 Ile2_3 spliced yes 40 25 37 85.322818 343.682482 214.50265 2.331432662 -0.000928 140 68 14107 MT_COB bi4/intronic no 7308 5791 5815 27.820546 321.76562 174.793083 2.242524243 -0.269243 140 69 6413 snR45 5_flank no 372 29.681403 313.179795 171.430599 2.234088343 -0.151837 140 70 3168 Ser5 SerTGA 5_flank no 282 33.598424 292.996455 163.2974395 2.212979375 0.100256 140 71 13380 MT_COX1 exon5b yes 13084 9901 9917 35.590742 300.952919 168.2718305 2.226011419 0.060036 140 72 9512 RUF3 5_flank no 631 29.628174 295.492746 162.56046 2.21101492 -0.046679 140 73 9793 RUF4 RUF4 yes 988 741 759 29.747513 302.798344 166.2729285 2.220821546 -0.087448 140 74 1136 His1 HisGTG 5_flank no 272 33.945795 310.091839 172.018817 2.235575957 -0.033487 140 75 14276 MT_VAR1 VAR1 yes 1467 346 364 32.0513 323.159048 177.605174 2.249455614 -0.159272 140 76 20937 YLR406C spliced yes 40 13 30 46.542921 323.63135 185.0871355 2.267376234 -0.090558 140 77 9401 RUF1 3_flank no 750 42.564123 291.32503 166.9445765 2.222572315 0.181225 140 78 19859 Negative Control no 60 NA #VALUE! 34.439251 284.956553 159.697902 2.203299211 0.177295 140 79 16670 YFR032C intron no 431 281 293 40.786464 291.885486 166.335975 2.220986188 0.17196 140 80 7710 snoRNA cluster1 snR77 yes 1574 346 363 45.112635 327.430914 186.2717745 2.270147052 -0.129035 140 81 3850 RNaseP RNaseP yes 569 216 228 36.887135 278.294013 157.590574 2.197530237 0.268295 140 82 19285 YPL143W 3_exon no 625 581 597 34.853066 299.831259 167.3421625 2.223605377 0.060591 140 83 15379 YBL027W intron no 484 341 358 32.736476 298.330166 165.533321 2.218885428 0.039902 140 84 16959 YGR029W 3_exon no 183 141 157 57.675114 298.691713 178.1834135 2.250867275 0.176833 140 85 2620 Pro3 ProTGG_ii tRNA-intron no 303 i15 i31 95.298877 360.451928 227.8754025 2.357697449 -0.045636 140 86 8774 LSR1 / U2 RNA U2 yes 1375 511 527 32.078384 272.335228 152.206806 2.182434073 0.18655 140 87 21619 copy of SH7514 no 284 56.070213 313.108263 184.589238 2.266206377 0.046438 140 88 11436 "rRNA(18S,5.8S,25S)" 25S yes 7956 4066 4081 84.333983 316.293799 200.313891 2.301711067 0.18755 140 89 12109 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7431 7448 50.720905 301.237334 175.9791195 2.24546114 0.119845 140 90 8183 snoRNA cluster 3; snR70 yes 743 426 443 60.059067 347.740334 203.8997005 2.309416588 -0.19686 140 91 13427 MT_COX1 intronic no 13084 10606 10634 26.563062 306.306686 166.434874 2.221244332 -0.262321 140 92 20317 YER044C-A spliced yes 40 9 26 28.43762 290.352371 159.3949955 2.202474682 -0.085136 140 93 17927 YLR078C intron no 189 121 138 49.915555 324.375696 187.1456255 2.27217968 -0.07944 140 94 21303 YPL218W spliced yes 40 9 26 44.406009 342.533088 193.4695485 2.286612618 -0.251944 140 95 5926 snR36 snR36 yes 555 86 104 113.811005 412.884673 263.347839 2.420529759 -0.223354 140 96 14180 MT_COB exon6 yes 7308 6886 6906 35.501462 321.231498 178.36648 2.251313242 -0.108386 140 97 8436 snoRNA cluster 5 intergenic/snR128 no 586 346 365 31.934668 319.978478 175.956573 2.245405495 -0.136338 140 98 13343 MT_COX1 ai5a no 13084 9346 9365 30.266437 307.64956 168.9579985 2.227778756 -0.098653 140 99 16657 YFR032C 5_exon no 431 21 33 47.181166 285.051524 166.116345 2.220412367 0.254512 140 100 8867 LSR1 / U2 RNA U2 yes 1375 976 992 49.528377 291.491692 170.5100345 2.231749942 0.200816 140 101 16408 YER056C intron no 497 221 240 32.802856 324.33587 178.569363 2.251806949 -0.158658 140 102 9588 RUF3 RUF3 yes 631 326 347 34.840917 348.519618 191.6802675 2.282577407 -0.33791 140 103 10908 "rRNA(18S,5.8S,25S)" 18S yes 7956 1426 1442 48829.74915 11323.84566 30076.7974 4.47823159 1.331376 140 104 5494 snR32 snR32 yes 388 131 143 36.652771 307.20126 171.9270155 2.235344124 0.019309 141 2 16772 YGL103W intron no 611 121 138 30.17812 375.736098 202.957109 2.307404268 -0.561122 141 3 4920 snR9 snR9 yes 387 6 27 29.922559 360.706264 195.3144115 2.290734289 -0.459375 141 4 11889 "rRNA(18S,5.8S,25S)" 25S yes 7956 6331 6348 1867.106531 3478.133258 2672.619895 3.426937197 -0.705602 141 5 18203 YML024W intron no 498 361 382 39.446155 305.084313 172.265234 2.236197638 0.045336 141 6 5500 snR32 snR32 yes 388 161 177 93.734197 318.900777 206.317487 2.314536039 0.225373 141 7 13511 MT_COX1 intronic no 13084 11866 11883 34.937999 270.083575 152.510787 2.183300562 0.291005 141 8 15305 YAL001C intron no 190 81 98 32.843412 299.058047 165.9507295 2.219979166 0.038821 141 9 11546 "rRNA(18S,5.8S,25S)" 25S yes 7956 4616 4629 100.473562 372.269938 236.37175 2.373595571 -0.083858 141 10 4568 U3b (snR17b) U3b yes 662 396 412 34.790332 310.381848 172.58609 2.23700579 -0.025622 141 11 7942 snoRNA cluster1 3_flank no 1574 1506 1523 32.882658 305.393923 169.1382905 2.228241937 -0.008935 141 12 13477 MT_COX1 intronic no 13084 11356 11378 34.922237 337.911994 186.4171155 2.270485784 -0.251334 141 13 11927 "rRNA(18S,5.8S,25S)" 25S yes 7956 6521 6534 36.954753 283.948416 160.4515845 2.20534401 0.219344 141 14 13905 MT_COB exon3 yes 7308 2761 2777 48.892574 328.138839 188.5157065 2.27534754 -0.114975 141 15 2896 Pro8 ProTGG_vii tRNA yes 305 1 13 232.368589 530.959331 381.66396 2.581681152 -0.115129 141 16 4618 snR3 snR3 yes 395 6 24 34.966745 267.431945 151.199345 2.17954991 0.310029 141 17 12559 MT_15S 15S yes 1848 136 153 199.971873 474.805665 337.388769 2.528130622 -0.037382 141 18 8913 LSR1 / U2 RNA 3_flank no 1375 30.984502 307.929689 169.4570955 2.229059758 -0.075844 141 19 19099 YOR312C intron no 507 201 220 30.030767 297.121154 163.5759605 2.213719479 -0.042704 141 20 6396 snR43 3_flank no 409 39.03842 287.105482 163.071951 2.212379267 0.214096 141 21 14049 MT_COB bi4 no 7308 4921 4942 29.267533 314.935386 172.1014595 2.235784553 -0.176792 141 22 9743 RUF4 RUF4 yes 988 491 507 31.472236 257.014556 144.243396 2.159095939 0.234813 141 23 11507 "rRNA(18S,5.8S,25S)" 25S yes 7956 4421 4441 377.720036 1337.396475 857.5582555 2.933263632 -1.20406 141 24 18825 YNL302C intron no 651 321 338 66.979833 363.318442 215.1491375 2.332739609 -0.257047 141 25 8160 snoRNA cluster 3; snR70 yes 743 311 323 36.504837 285.496158 161.0004975 2.206827218 0.200837 141 26 17558 YJL189W intron no 486 161 180 34.756374 308.462788 171.609581 2.234541531 -0.010699 141 27 13268 MT_COX1 intronic no 13084 8221 8242 30.828233 325.471813 178.150023 2.250785883 -0.193006 141 28 15787 YDL029W intron no 223 101 115 43.646133 291.219667 167.4329 2.223840799 0.184699 141 29 3951 RNase MRP RNaseMRP yes 540 171 187 35.318943 280.293242 157.8060925 2.198123766 0.232616 141 30 6459 snR45 snR45 yes 372 141 158 31.144688 298.004224 164.574456 2.216362428 -0.010136 141 31 18818 YNL302C intron no 651 181 198 33.264923 287.600919 160.432921 2.205293491 0.12406 141 32 1445 Leu2 LeuCAA_ii 5_flank/tRNA no 314 60.860797 328.503002 194.6818995 2.289325575 -0.048438 141 33 21342 YPR098C spliced yes 40 13 29 36.353457 311.519943 173.9367 2.240391226 -0.020446 141 34 16836 YGL178W intron no 740 501 520 28.905674 290.613307 159.7594905 2.203466667 -0.060967 141 35 5223 snR30 5_flank no 801 30.915105 291.183192 161.0491485 2.206958433 0.02477 141 36 15066 MT_COX 2; ORF1 ORF1exon1 yes 2427 1591 1612 28.716241 309.964577 169.340409 2.228760604 -0.167357 141 37 20850 YLR061W spliced yes 40 1 16 39.016453 303.384923 171.200688 2.233505506 0.059943 141 38 18805 YNL301C intron no 532 441 461 30.526523 307.956863 169.241693 2.228507361 -0.091556 141 39 5864 snR35 snR35 yes 740 506 522 31.37952 274.818969 153.0992445 2.184973048 0.141037 141 40 12847 MT_COX1 ai1 no 13084 1906 1925 34.230986 305.292241 169.7616135 2.229839494 0.008528 141 41 18709 YNL130C intron no 541 261 278 33.950084 309.155034 171.552559 2.234397201 -0.025957 141 42 3478 Tyr1 TyrGTA_i 5_flank no 289 33.646705 327.976221 180.811463 2.25722596 -0.175725 141 43 16466 YER093C intron/exon no 175 121 133 53.400611 316.794139 185.097375 2.26740026 0.001666 141 44 7139 snR63 snR63 yes 455 201 218 35.095661 319.6433 177.3694805 2.248878894 -0.095587 141 45 1017 Gly2 GlyCCC_ii 3_flank no 272 29.014412 304.730438 166.872425 2.222384577 -0.125215 141 46 12256 5S rRNA NTS2 no 1420 236 248 34.859942 280.551191 157.7055665 2.197847023 0.218659 141 47 11893 "rRNA(18S,5.8S,25S)" 25S yes 7956 6351 6368 786.827073 2558.786369 1672.806721 3.223445765 -1.341843 141 48 15720 YBR255C exon/intron no 194 41 62 29.021083 323.154419 176.087751 2.245729147 -0.233056 141 49 12976 MT_COX1 ai2 no 13084 3841 3862 31.052602 317.587715 174.3201585 2.241347612 -0.130412 141 50 13619 MT_ATP6 5_flank/ATP6 no 980 91 117 29.127078 328.129317 178.6281975 2.251950016 -0.257378 141 51 5808 snR35 snR35 yes 740 226 244 41.082506 294.362636 167.722571 2.224591511 0.149007 141 52 17353 YIL018W 3_exon no 500 461 477 43.176059 275.62707 159.4015645 2.20249258 0.337295 141 53 17625 YJR094W intron no 375 101 115 65.49745 325.296528 195.396989 2.290917867 0.004019 141 54 10708 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 426 441 73.110853 307.168266 190.1395595 2.279072483 0.191533 141 55 17174 YHR021C intron no 650 61 80 31.802825 302.824518 167.3136715 2.223531429 -0.017843 141 56 8261 snoRNA cluster4 5_flank/snR67 no 638 91 108 30.025465 291.096547 160.561006 2.205640081 -0.005172 141 57 18621 YNL096C exon/intron no 445 41 60 30.23544 328.197024 179.216232 2.253377342 -0.221652 141 58 4471 U3b (snR17b) 5_flank no 662 30.383443 282.986947 156.685195 2.195027962 0.051915 141 59 10501 RUF8 RUF8 yes 1151 431 450 32.535195 299.161719 165.848457 2.219711435 0.028337 141 60 11053 "rRNA(18S,5.8S,25S)" 18S yes 7956 2151 2164 6898.825317 5308.521908 6103.673613 3.785591302 0.203084 141 61 21777 copy of SH14041 no 7308 28.45812 334.85059 181.654355 2.259245814 -0.318973 141 62 4531 U3b (snR17b) U3b yes 662 211 226 49.270471 290.747995 170.009233 2.230472508 0.206408 141 63 2364 Phe3 PheGAA_iii 3_flank no 291 165.414752 459.510521 312.4626365 2.494798093 -0.142189 141 64 16672 YFR032C intron no 431 321 341 30.547777 294.532838 162.5403075 2.210961077 -0.00877 141 65 12458 5S rRNA NTS2/5S no 1420 1246 1258 330.26254 525.83568 428.04911 2.631493598 0.261023 141 66 10196 RUF6 RUF6 yes 1251 826 845 30.403939 315.838469 173.121204 2.238350264 -0.142287 141 67 2241 Phe1 PheGAA_i tRNA/3_flank no 292 30.261694 280.541577 155.4016355 2.191455585 0.057233 141 68 19782 Negative Control no 60 NA #VALUE! 38.28589 298.462077 168.3739835 2.226274987 0.103927 141 69 3556 Tyr2 TyrGTA_ii intron/tRNA no 289 i11 51 44.236862 298.493906 171.365384 2.233923098 0.11894 141 70 17407 YIL069C 3_exon no 509 481 497 33.934992 286.488734 160.211863 2.204694671 0.152019 141 71 2738 Pro5 ProTGG_iv tRNA yes 303 41 53 195.756372 545.364938 370.560655 2.568859305 -0.329343 141 72 2973 Ser1 SerAGA_i 3_flank no 283 31.986848 288.613369 160.3001085 2.204933816 0.076679 141 73 21268 YPL081W spliced yes 40 17 29 58.852486 303.175474 181.01398 2.257712117 0.14426 141 74 14681 MT_21S 21S_rRNA4 yes 4639 4426 4454 28.192847 316.352086 172.2724665 2.236215872 -0.224121 141 75 6314 snR42 snR42/3_flank no 551 32.451998 284.952955 158.7024765 2.200583704 0.115255 141 76 1359 Ile3 IleTAT_ii 3_flank no 333 30.509344 286.261987 158.3856655 2.199715874 0.042357 141 77 13768 MT_COB intronic no 7308 706 728 30.608754 319.63462 175.121687 2.243339932 -0.157273 141 78 9185 snR7 U5 RNA U5 yes 415 196 212 104.640319 399.297717 251.969018 2.401347143 -0.211111 141 79 19295 YPL175W 3_exon no 200 161 178 34.970324 290.223493 162.5969085 2.211112284 0.14247 141 80 14512 MT_21S 21S_rRNA3 yes 4639 1891 1909 35.059893 320.267023 177.663458 2.249598111 -0.101127 141 81 14904 MT_Ile 3_flank no 276 211 239 26.723772 331.519709 179.1217405 2.253148301 -0.366227 141 82 7316 snR66 snR66/3_flank no 286 33.017607 284.102477 158.560042 2.200193752 0.138801 141 83 6283 snR42 snR42 yes 551 196 213 32.943686 316.03871 174.491198 2.241773524 -0.09284 141 84 21780 copy of SH14230 no 431 28.614768 327.816681 178.2157245 2.25094602 -0.274153 141 85 13423 MT_COX1 intronic no 13084 10546 10558 51.25797 288.340492 169.799231 2.229935719 0.23794 141 86 2192 Met2 MetCAT_ii 3_flank no 272 30.169191 300.223382 165.1962865 2.21800028 -0.057025 141 87 16426 YER074W intron no 566 81 97 42.020857 309.152086 175.5864715 2.244491052 0.015387 141 88 10550 RUF8 RUF8 yes 1151 676 695 27.482228 292.535786 160.009007 2.20414443 -0.14821 141 89 748 Gln4 GlnTTG_iii tRNA yes 272 11 28 29.164901 285.811581 157.488241 2.197248132 -0.024909 141 90 4211 telomerase RNA telomerase yes 1501 91 110 28.91262 275.011201 151.9619105 2.181734745 0.012887 141 91 8458 snoRNA cluster 5 snR128 yes 586 456 472 32.661624 285.415931 159.0387775 2.201503029 0.118989 141 92 18543 YMR230W intron no 510 241 258 27.739103 284.587295 156.163199 2.193578697 -0.097073 141 93 1821 Leu8 LeuTAG_i 3_flank no 301 26.84478 282.826121 154.8354505 2.189870402 -0.142823 141 94 18 Ala1 AlaAGC 5_flank/tRNA no 273 32.943545 289.347852 161.1456985 2.207218717 0.102773 141 95 16141 YDR092W intron no 368 101 113 61.352179 295.610619 178.481399 2.251592961 0.222015 141 96 17545 YJL177W intron no 417 301 318 31.704854 277.652938 154.678896 2.189431064 0.138715 141 97 6089 snR37 snR37 yes 586 361 377 30.076743 262.368706 146.2227245 2.165014872 0.136888 141 98 15832 YDL075W intron no 521 81 95 44.921395 294.160149 169.540772 2.229274156 0.161244 141 99 7851 snoRNA cluster1 intergenic no 1574 1051 1070 30.678779 315.877622 173.2782005 2.238743929 -0.133118 141 100 17276 YHR141C exon/intron no 541 41 58 37.122353 334.841363 185.981858 2.269470582 -0.22025 141 101 8967 snR17a / U3a U3a yes 690 121 142 28.769643 290.927637 159.84864 2.203708946 -0.069736 141 102 5688 snR34 snR34 yes 750 361 377 588.348433 653.127468 620.7379505 2.792908298 0.53951 141 103 4166 SRP 3_flank no 875 53.982605 299.036755 176.50968 2.246768528 0.154507 141 104 2842 Pro7 ProTGG_vi tRNA yes 303 16 33 30.532123 289.946183 160.239153 2.204768641 0.019592 142 2 4493 U3b (snR17b) U3b yes 662 21 42 31.420298 374.354332 202.887315 2.307254895 -0.547145 142 3 1949 Lys2 LysCTT_ii 5_flank no 273 30.083883 355.938993 193.011438 2.285583046 -0.424269 142 4 15882 YDL082W intron no 465 181 198 37.9322 331.606048 184.769124 2.2666294 -0.191151 142 5 4047 SRP SRP yes 875 126 145 31.492187 325.770988 178.6315875 2.251958258 -0.186453 142 6 16952 YGR029W 5_exon no 183 1 17 41.183761 314.476393 177.830077 2.250005217 -0.034317 142 7 2500 Pro1 ProAGG 5_flank/tRNA no 272 254.30652 534.158727 394.2326235 2.59575256 -0.038332 142 8 8174 snoRNA cluster 3; snR70 yes 743 381 400 40.676495 332.503463 186.589979 2.270888316 -0.188978 142 9 18114 YLR367W intron no 583 501 522 28.81437 297.856756 163.335563 2.213080754 -0.098666 142 10 3865 RNaseP RNaseP yes 569 291 303 64.292395 309.117712 186.7050535 2.271156073 0.124931 142 11 15605 YBR119W intron no 189 61 79 30.830373 281.07452 155.9524465 2.192992192 0.083634 142 12 18278 YML056C intron no 508 441 458 38.779346 281.161029 159.9701875 2.204039054 0.263678 142 13 20151 YDL125C spliced yes 40 1 22 29.006777 301.437913 165.222345 2.218068782 -0.105488 142 14 12700 MT_ORF 8 ORF8 yes 491 166 188 31.027317 318.437235 174.732276 2.242373134 -0.13634 142 15 2517 Pro1 ProAGG 3_flank no 272 42.944491 319.570136 181.2573135 2.258295539 -0.072428 142 16 11770 "rRNA(18S,5.8S,25S)" 25S yes 7956 5736 5753 6382.396488 10667.61311 8525.004797 3.930694632 -1.055177 142 17 19226 YPL090C intron no 494 81 100 37.027464 293.508252 165.267858 2.218188398 0.138324 142 18 20222 YDR092W spliced yes 40 17 34 37.0593 346.170549 191.6149245 2.282429332 -0.312732 142 19 19837 Negative Control no 60 NA #VALUE! 39.116627 294.818885 166.967756 2.22263261 0.140203 142 20 16256 YDR397C 3_exon no 192 161 178 39.240727 273.180098 156.2104125 2.193709979 0.339741 142 21 5551 snR33 snR33 yes 383 41 62 31.417192 320.336934 175.877063 2.245209205 -0.145869 142 22 11749 "rRNA(18S,5.8S,25S)" 25S yes 7956 5631 5644 87.14543 352.14046 219.642945 2.341717258 -0.045651 142 23 20954 YML024W spliced yes 40 9 27 79.859503 391.885114 235.8723085 2.372676958 -0.342528 142 24 19716 Negative Control no 60 NA #VALUE! 32.177106 269.358484 150.767795 2.178308583 0.206761 142 25 3486 Tyr1 TyrGTA_i 5_flank no 289 32.476619 305.158693 168.817656 2.227417866 -0.012175 142 26 10619 RUF8 3_flank no 1151 34.840207 299.152136 166.9961715 2.222706515 0.066043 142 27 9106 snR14 / U4 RNA U4/3_flank no 360 30.893796 286.082823 158.4883095 2.199997233 0.056586 142 28 19663 SIR1 2.2 SIR1 2.2 yes 401 381 400 31.061561 310.831204 170.9463825 2.232859915 -0.090518 142 29 16561 YER133W intron no 625 381 403 37.529735 324.242076 180.8859055 2.257404728 -0.129377 142 30 4899 snR9 5_flank no 387 340.202764 680.805076 510.50392 2.707999081 -0.165172 142 31 880 Glu3 GluTTC_ii 5_flank no 272 31.265113 304.899849 168.082481 2.22552245 -0.048224 142 32 14787 MT_ORF11; Leu; Gln 3_flank no 716 691 715 29.138217 305.45716 167.2976885 2.22348994 -0.125154 142 33 7434 snR69 snR69 yes 301 71 88 39.706763 316.77073 178.2387465 2.251002119 -0.059093 142 34 7038 snR62 5_flank no 300 33.27162 283.607189 158.4394045 2.199863201 0.150017 142 35 16252 YDR397C intron no 192 81 95 37.407437 298.417037 167.912237 2.225082348 0.101561 142 36 9072 snR14 / U4 RNA 5_flank no 360 93.140396 325.980031 209.5602135 2.321308832 0.170737 142 37 7187 snR64 snR64 yes 301 1 17 6902.138141 6659.141635 6780.639888 3.83127068 -0.174253 142 38 13415 MT_COX1 intronic no 13084 10426 10450 30.735107 304.240666 167.4878865 2.223983402 -0.062093 142 39 14941 MT_Asn 3_flank no 271 241 265 28.500292 326.5257 177.512996 2.249230154 -0.271074 142 40 128 Arg1 ArgACG_i tRNA yes 273 16 28 77.116992 308.03217 192.574581 2.284598962 0.207513 142 41 813 Glu1 GluCTC 3_flank no 272 28.054489 306.674363 167.364426 2.223663152 -0.17904 142 42 7605 snR189 snR189 yes 389 96 113 31.805408 291.500922 161.653165 2.208584212 0.052409 142 43 11524 "rRNA(18S,5.8S,25S)" 25S yes 7956 4506 4525 29.465478 264.968552 147.217015 2.167958008 0.091854 142 44 10364 RUF7 RUF7 yes 700 431 450 31.160851 295.169894 163.1653725 2.212627997 0.008001 142 45 20590 YHR021C spliced yes 40 21 40 36.845926 312.126431 174.4861785 2.241761031 -0.024652 142 46 18521 YMR225C exon/intron no 247 41 55 98.448261 391.747201 245.097731 2.389339291 -0.211265 142 47 11158 "rRNA(18S,5.8S,25S)" 18S/ITS1 no 7956 2676 2693 3275.86974 5628.845054 4452.357397 3.648590018 -0.802846 142 48 15313 YAL003W intron no 466 61 82 32.784979 290.412 161.5984895 2.208437297 0.090976 142 49 14978 MT_COX 2; ORF1 COX2 no 2427 271 292 28.926784 298.162492 163.544638 2.21363631 -0.093982 142 50 1919 Lys1 LysCTT_i tRNA yes 272 51 63 36.871049 277.545313 157.208181 2.196475143 0.274772 142 51 11328 "rRNA(18S,5.8S,25S)" 25S yes 7956 3526 3541 44049.58546 17273.3857 30661.48558 4.486593193 0.504117 142 52 3792 RNaseP 5_flank no 569 35.070138 288.889862 161.98 2.209461395 0.155032 142 53 737 Gln4 GlnTTG_iii 5_flank no 272 29.26142 316.860746 173.061083 2.238199417 -0.188232 142 54 13034 MT_COX1 ai2 no 13084 4711 4733 29.452608 320.587873 175.0202405 2.243088276 -0.202962 142 55 9951 RUF5-1 RUF5-1 yes 975 561 578 29.696683 302.909928 166.3033055 2.220900881 -0.089912 142 56 2401 Phe4 PheGAA_iv tRNA yes 291 38 52 206.303451 427.47948 316.8914655 2.500910543 0.198702 142 57 15648 YBR189W intron no 513 101 119 40.463332 308.851362 174.657347 2.242186859 0.013372 142 58 17910 YLR061W intron no 489 261 278 36.570988 282.806886 159.688937 2.20327483 0.224977 142 59 2718 Pro5 ProTGG_iv 5_flank no 303 32.571542 312.120472 172.346007 2.236401226 -0.066713 142 60 7281 snR65 3_flank no 300 40.971451 313.904645 177.438048 2.249046751 -0.030061 142 61 16266 YDR447C 5_exon no 414 1 18 41.039299 310.049337 175.544318 2.244386777 0.004072 142 62 12979 MT_COX1 ai2 no 13084 3886 3908 28.588861 308.351753 168.470307 2.226523367 -0.162395 142 63 3537 Tyr2 TyrGTA_ii 5_flank no 289 32.782573 300.876341 166.829457 2.222272736 0.025724 142 64 8039 snoRNA cluster 2 intergenic no 739 431 447 45.341254 314.265329 179.8032915 2.254797638 -0.018778 142 65 613 Gln1 GlnCTG 3_flank no 272 36.931039 298.184878 167.5579585 2.22416506 0.098178 142 66 20817 YKL190W spliced yes 40 13 32 30.597997 295.493288 163.0456425 2.212309196 -0.013049 142 67 16262 YDR424C intron no 196 101 117 32.543464 297.571328 165.057396 2.217634989 0.038416 142 68 9915 RUF5-1 RUF5-1 yes 975 381 402 31.362874 301.653512 166.508193 2.221435608 -0.025256 142 69 12607 MT_15S 15S yes 1848 856 880 30.210116 331.163581 180.6868485 2.256926543 -0.244236 142 70 10395 RUF8 5_flank no 1151 40.389297 291.475151 165.932224 2.219930734 0.174997 142 71 4598 snR3 5_flank no 395 57.928967 351.787687 204.858327 2.311453622 -0.239215 142 72 11962 "rRNA(18S,5.8S,25S)" 25S yes 7956 6696 6709 237.50251 493.932833 365.7176715 2.563145946 0.044835 142 73 3158 Ser5 SerTGA 5_flank no 282 32.448627 305.450688 168.9496575 2.227757316 -0.014896 142 74 18108 YLR367W intron no 583 381 398 30.560812 281.956382 156.258597 2.193843921 0.065817 142 75 14795 MT_Lys; Arg1; Gly tRNALys yes 682 106 126 30.72883 301.395876 166.062353 2.220271187 -0.045009 142 76 9570 RUF3 RUF3 yes 631 236 257 30.870781 278.438306 154.6545435 2.189362683 0.098217 142 77 12746 MT_COX1 ai1 no 13084 391 410 33.088291 296.029978 164.5591345 2.216321995 0.065315 142 78 12610 MT_15S 15S yes 1848 901 922 28.968022 332.100155 180.5340885 2.256559218 -0.285243 142 79 11309 "rRNA(18S,5.8S,25S)" ITS2/25S no 7956 3431 3450 31.152434 315.476685 173.3145595 2.238835048 -0.114781 142 80 3223 Thr1 ThrAGT 5_flank no 273 29.091612 276.917967 153.0047895 2.184705026 0.013276 142 81 21379 Lys3_4 spliced yes 40 5 17 54.676898 304.323588 179.500243 2.254065041 0.112637 142 82 21518 copy of SH3113 no 301 31.198975 275.736439 153.467707 2.186017004 0.127633 142 83 21725 copy of SH11920 no 7956 52.31225 318.307893 185.3100715 2.267899024 -0.016784 142 84 10294 RUF7 RUF7 yes 700 81 98 30.926036 296.838728 163.882382 2.214532268 -0.010278 142 85 3095 Ser3 SerCGA 3_flank no 301 34.854614 312.112618 173.483616 2.239258466 -0.0386 142 86 537 Cys1 CysGCA 5_flank/tRNA no 272 30.391841 294.299585 162.345713 2.210440825 -0.012656 142 87 2213 Phe1 PheGAA_i 5_flank no 292 30.071964 323.556966 176.814465 2.247517791 -0.198205 142 88 11883 "rRNA(18S,5.8S,25S)" 25S yes 7956 6301 6319 35.823496 294.996212 165.409854 2.218561378 0.11214 142 89 8770 LSR1 / U2 RNA U2 yes 1375 491 503 112.353362 354.405687 233.3795245 2.368062751 0.099724 142 90 334 Arg5 ArgTCT tRNA yes 272 6 18 70.293293 308.506652 189.3999725 2.277379912 0.164335 142 91 7971 snoRNA cluster 2 5_flank/snR57 no 739 91 105 60.931757 327.127059 194.029408 2.287867559 -0.03741 142 92 15726 YBR255C 3_exon no 194 161 175 79.703598 333.327332 206.515465 2.31495258 0.034247 142 93 174 Arg2 ArgACG_ii 5_flank/tRNA no 273 31.100342 289.364575 160.2324585 2.204750496 0.042544 142 94 12275 5S rRNA NTS2 no 1420 331 351 39.259397 327.595182 183.4272895 2.263463949 -0.153236 142 95 6561 snR47 5_flank no 299 30.570491 295.0582 162.8143455 2.211692668 -0.011275 142 96 14708 MT_Thr2 3_flank no 276 196 224 28.891956 308.091886 168.491921 2.226579082 -0.14983 142 97 5287 snR30 snR30 yes 801 286 298 52.971138 286.912944 169.942041 2.23030083 0.259116 142 98 14818 MT_Lys; Arg1; Gly intergenic no 682 451 475 30.600535 308.438493 169.519514 2.229219699 -0.091905 142 99 10949 "rRNA(18S,5.8S,25S)" 18S yes 7956 1631 1653 28.768017 289.820123 159.29407 2.202199609 -0.064745 142 100 19276 YPL143W intron no 625 401 421 31.023954 311.753405 171.3886795 2.233982133 -0.097237 142 101 572 Gln1 GlnCTG 5_flank no 272 31.082735 265.390223 148.236479 2.170955091 0.17276 142 102 4658 snR3 3_flank no 395 33.1691 294.014544 163.591822 2.213761589 0.08044 142 103 19060 YOR234C 3_exon no 627 581 597 37.316747 293.707215 165.511981 2.218829437 0.139872 142 104 3762 Val4 ValTAC tRNA yes 274 35 49 65.142832 311.673937 188.4083845 2.275100226 0.108798 143 2 4552 U3b (snR17b) U3b yes 662 316 333 32.710486 379.236766 205.973626 2.313811614 -0.579676 143 3 21484 copy of SH1850 no 301 36.526108 319.008885 177.7674965 2.249852356 -0.086389 143 4 1852 Leu9 LeuTAG_ii tRNA yes 301 1 13 30837.55263 16102.77856 23470.1656 4.370516154 0.183807 143 5 16902 YGL226C 3_exon no 249 201 217 41.774743 295.911789 168.843266 2.227483744 0.135867 143 6 8521 snR19 / U1 RNA U1 yes 868 101 120 33.314239 265.221737 149.267988 2.173966679 0.274756 143 7 11479 "rRNA(18S,5.8S,25S)" 25S yes 7956 4281 4296 82.664435 321.607069 202.135752 2.305643135 0.137859 143 8 11665 "rRNA(18S,5.8S,25S)" 25S yes 7956 5211 5224 36.750111 249.958761 143.354436 2.156411136 0.486379 143 9 3611 Val1 ValAAC_i tRNA yes 274 50 64 32.697805 264.090046 148.3939255 2.171416123 0.258007 143 10 6393 snR43 snR43/3_flank no 409 38.539046 334.62791 186.583478 2.270873184 -0.214136 143 11 10315 RUF7 RUF7 yes 700 186 204 33.674009 286.163038 159.9185235 2.203898771 0.146052 143 12 18190 YML024W intron no 498 101 117 30.802307 312.627625 171.714966 2.234808148 -0.10988 143 13 5698 snR34 snR34 yes 750 411 426 40.711544 274.178995 157.4452695 2.197129617 0.345957 143 14 14059 MT_COB bi4 no 7308 5071 5093 28.972673 305.347936 167.1603045 2.223133154 -0.130445 143 15 14247 MT_Ser tRNA/3_flank no 290 181 200 30.990981 274.515658 152.7533195 2.183990657 0.123148 143 16 10149 RUF6 RUF6 yes 1251 591 614 29.060866 277.30536 153.183113 2.185210891 0.009771 143 17 8604 snR19 / U1 RNA U1 yes 868 516 531 91.498563 373.813634 232.6560985 2.366714441 -0.153429 143 18 15842 YDL075W intron no 521 281 300 37.085454 347.026947 192.0562005 2.283428333 -0.319409 143 19 13714 MT_Glu (and 5_flank processing site for COB) 3_flank no 368 241 267 29.228384 308.495379 168.8618815 2.227531624 -0.140151 143 20 5829 snR35 snR35 yes 740 331 347 86.353597 420.2215 253.2875485 2.403613841 -0.452973 143 21 9265 RUF1 5_flank no 750 33.503954 280.207273 156.8556135 2.195500066 0.179489 143 22 2085 Lys4 LysTTT_ii tRNA/3_flank no 296 33.731698 303.093206 168.412452 2.226374199 0.020309 143 23 17445 YIL148W 5_exon no 534 1 17 36.041392 270.322348 153.18187 2.185207367 0.321846 143 24 8282 snoRNA cluster4 intergenic no 638 196 215 32.250853 305.545805 168.898329 2.227625353 -0.019706 143 25 16980 YGR034W intron no 454 381 404 35.643459 304.804444 170.2239515 2.231020668 0.029222 143 26 4489 U3b (snR17b) U3b yes 662 1 15 34.889247 275.688552 155.2888995 2.191140412 0.251729 143 27 1226 Ile1 IleAAT 3_flank no 274 33.029012 293.788874 163.408943 2.213275821 0.077434 143 28 12879 MT_COX1 ai1 no 13084 2386 2407 28.989605 314.38099 171.6852975 2.234733105 -0.183512 143 29 21254 YPL075W spliced yes 40 13 29 48.241346 285.389879 166.8156125 2.222236694 0.254423 143 30 5991 snR36 3_flank no 555 33.431795 305.198568 169.3151815 2.2286959 -0.000496 143 31 13109 MT_COX1 ai3 no 13084 5836 5853 31.350631 287.303623 159.327127 2.202289725 0.064074 143 32 1570 Leu4 LeuCAA_iv tRNA yes 314 20:B 34 31.357157 286.702244 159.0297005 2.201478241 0.06815 143 33 16094 YDR025W 3_exon no 439 421 437 59.119908 300.158988 179.639448 2.254401712 0.17149 143 34 10911 "rRNA(18S,5.8S,25S)" 18S yes 7956 1441 1454 1867.386437 2613.31797 2240.352204 3.350316299 -0.24615 143 35 13908 MT_COB bi3 no 7308 2806 2830 31.179734 309.425723 170.3027285 2.231221606 -0.078209 143 36 19092 YOR312C intron no 507 61 78 35.302952 311.755346 173.529149 2.239372437 -0.030477 143 37 13851 MT_COB bi2 no 7308 1951 1972 30.976767 296.779859 163.878313 2.214521485 -0.008201 143 38 4542 U3b (snR17b) U3b yes 662 266 280 45.564959 297.802102 171.6835305 2.234728636 0.129518 143 39 11730 "rRNA(18S,5.8S,25S)" 25S yes 7956 5536 5553 174.453959 648.070854 411.2624065 2.614119012 -0.773669 143 40 7382 snR68 snR68/3_flank no 336 29.472472 279.902891 154.6876815 2.18945573 0.019208 143 41 18359 YMR033W intron no 186 101 121 30.230107 287.16437 158.6972385 2.20056937 0.02454 143 42 1393 Leu1 LeuCAA_i tRNA/intron no 315 35 i15 31.918015 277.960081 154.939048 2.190160883 0.143676 143 43 14479 MT_21S 21S_rRNA3 yes 4639 1396 1413 55.694428 361.522095 208.6082615 2.319331504 -0.32227 143 44 12114 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7456 7473 57.037758 334.241317 195.6395375 2.291456627 -0.115379 143 45 9707 RUF4 RUF4 yes 988 311 323 30.854281 305.060137 167.957209 2.225198649 -0.063004 143 46 3660 Val2 ValAAC_ii tRNA yes 274 40 52 46.326942 299.034376 172.680659 2.237243697 0.120553 143 47 19365 YPR028W intron no 233 101 116 82.445526 309.729921 196.0877235 2.292450405 0.226836 143 48 18501 YMR194W intron no 563 381 399 44.304711 293.850341 169.077526 2.228085884 0.162166 143 49 13180 MT_COX1 exon4 yes 13084 6901 6917 46.38379 316.736893 181.5603415 2.259020991 -0.034555 143 50 15633 YBR186W 5_exon no 213 1 20 28.846415 282.671771 155.759093 2.19245341 -0.027261 143 51 13091 MT_COX1 ai3 no 13084 5566 5585 29.923086 309.844733 169.8839095 2.230152247 -0.123657 143 52 13085 MT_COX1 ai3 no 13084 5476 5498 31.022732 309.668106 170.345419 2.231330459 -0.084922 143 53 7709 snoRNA cluster1 snR77 yes 1574 341 361 33.163892 297.945465 165.5546785 2.218941458 0.055614 143 54 856 Glu2 GluTTC_i tRNA yes 272 46 59 53.457446 278.214654 165.83605 2.219678945 0.342629 143 55 4050 SRP SRP yes 875 141 155 60.009712 285.813675 172.9116935 2.237824364 0.302695 143 56 1615 Leu5 LeuCAA_v 5_flank no 315 29.919404 320.614078 175.266741 2.243699511 -0.186693 143 57 14234 MT_ATP9 3_flank no 431 406 428 30.167781 310.786425 170.477103 2.231666057 -0.12074 143 58 19441 YPR187W intron no 176 81 103 30.366265 316.121109 173.243687 2.238657418 -0.145228 143 59 16181 YDR367W 5_exon no 201 1 18 30.50669 270.874915 150.6908025 2.178086746 0.116455 143 60 2411 Phe4 PheGAA_iv 3_flank no 291 32.677598 280.080376 156.378987 2.194178396 0.154244 143 61 16090 YDR025W intron no 439 341 359 30.670331 292.914462 161.7923965 2.208958108 0.005555 143 62 14935 MT_Asn tRNA yes 271 151 168 34.900861 299.936503 167.418682 2.223803919 0.060291 143 63 18891 YOL120C 5_exon no 547 21 40 30.775491 300.034307 165.404899 2.218548368 -0.035088 143 64 3722 Val3 ValCAC 3_flank no 273 30.800108 302.724 166.762054 2.222097236 -0.050685 143 65 18737 YNL162W intron no 612 61 78 30.786511 293.281543 162.034027 2.209606226 0.007197 143 66 21111 YNL069C spliced yes 40 21 38 34.8987 300.996734 167.947717 2.225174105 0.051545 143 67 11460 "rRNA(18S,5.8S,25S)" 25S yes 7956 4186 4201 47.307697 275.337712 161.3227045 2.207695494 0.349997 143 68 333 Arg5 ArgTCT tRNA yes 272 1 13 51.294672 317.421156 184.357914 2.265661785 -0.015392 143 69 2708 Pro5 ProTGG_iv 5_flank no 303 30.401382 291.554231 160.9778065 2.206766005 0.004928 143 70 16686 YGL030W intron no 330 181 196 44.804622 282.494511 163.6495665 2.213914859 0.271912 143 71 19224 YPL090C exon/intron no 494 41 58 30.365194 297.538153 163.9516735 2.214715854 -0.033722 143 72 15909 YDL083C intron no 532 261 278 32.531744 290.407916 161.46983 2.208091388 0.082905 143 73 5062 snR11 5_flank no 458 32.705643 295.611721 164.158682 2.215263857 0.055772 143 74 1316 Ile3 IleTAT_ii 5_flank no 333 30.821798 320.666836 175.744317 2.24488129 -0.156335 143 75 1141 His1 HisGTG 5_flank no 272 32.068527 317.089625 174.579076 2.241992191 -0.112193 143 76 19958 YBL059C-A spliced yes 40 13 30 35.423735 291.576243 163.499989 2.213517728 0.136312 143 77 15253 MT_fMet 3_flank no 274 226 252 29.198712 320.809914 175.004313 2.243048752 -0.213278 143 78 1080 Gly3 GlyGCC 3_flank no 271 48.571991 289.55871 169.0653505 2.228054609 0.215618 143 79 9344 RUF1 RUF1 yes 750 296 312 42.237002 298.827129 170.5320655 2.231806052 0.109479 143 80 21333 YPR063C spliced yes 40 1 13 80.117059 323.448203 201.782631 2.30488378 0.108936 143 81 13173 MT_COX1 exon4 yes 13084 6796 6815 29.424049 319.464341 174.444195 2.241656522 -0.197512 143 82 21644 copy of SH8559 no 868 31.511397 285.694201 158.602799 2.200310847 0.079758 143 83 18422 YMR133W intron/exon no 225 161 179 37.790272 317.962395 177.8763335 2.250118169 -0.074101 143 84 8637 snR19 / U1 RNA 3_flank no 868 33.318934 267.458503 150.3887185 2.177215259 0.25944 143 85 17391 YIL069C intron no 509 161 180 30.955851 320.069833 175.512842 2.244308899 -0.149933 143 86 18498 YMR194W intron no 563 321 337 36.92864 286.307964 161.618302 2.20849054 0.1986 143 87 19167 YPL079W 5_exon no 521 21 38 61.51475 318.231382 189.873066 2.278463363 0.035699 143 88 16610 YFL034C intron no 214 141 157 32.146198 301.049085 166.5976415 2.221668849 0.004198 143 89 3736 Val4 ValTAC 5_flank no 274 35.944721 295.069426 165.5070735 2.21881656 0.112925 143 90 15562 YBR084C 5_exon no 606 1 18 31.675668 294.552063 163.1138655 2.21249088 0.02897 143 91 4172 SRP 3_flank no 875 35.550557 304.472958 170.0117575 2.230478957 0.03083 143 92 6992 snR60 snR60 yes 304 41 58 33.477144 281.980466 157.728805 2.197911013 0.167038 143 93 6061 snR37 snR37 yes 586 221 240 31.508066 303.503583 167.5058245 2.224029913 -0.03169 143 94 17913 YLR061W intron no 489 321 337 39.713698 301.928547 170.8211225 2.232541571 0.075005 143 95 10928 "rRNA(18S,5.8S,25S)" 18S yes 7956 1526 1539 35.946416 267.788483 151.8674495 2.181464699 0.33643 143 96 21224 YOR182C spliced yes 40 17 33 34.256011 299.379924 166.8179675 2.222242825 0.05716 143 97 15532 YBR078W 5_exon no 430 1 17 32.566428 260.868757 146.7175925 2.166482192 0.268094 143 98 10808 "rRNA(18S,5.8S,25S)" 18S yes 7956 926 944 10915.46708 9504.277505 10209.87229 4.00902031 -0.208521 143 99 18055 YLR333C intron no 523 381 398 32.144199 294.080951 163.112575 2.212487444 0.04725 143 100 11149 "rRNA(18S,5.8S,25S)" 18S yes 7956 2631 2650 33755.13496 14228.95996 23992.04746 4.380067312 0.499979 143 101 2485 Pro1 ProAGG 5_flank no 272 35.622776 311.870731 173.7467535 2.239916698 -0.027657 143 102 13081 MT_COX1 ai3 no 13084 5416 5438 31.348008 318.914395 175.1312015 2.243363527 -0.135783 143 103 5409 snR31 snR31 yes 425 111 132 29.138113 304.181503 166.659808 2.221830877 -0.117453 143 104 89 Ala2 AlaTGC 3_flank no 273 29.013974 285.985655 157.4998145 2.197280047 -0.033782 144 2 13386 MT_COX1 exon5b yes 13084 9991 10005 37.240515 300.666485 168.9535 2.227767193 0.080838 144 3 11307 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3421 3438 28.441047 315.443844 171.9424455 2.235383099 -0.209675 144 4 17748 YKL157W intron no 483 101 122 34.303953 314.522553 174.413253 2.241579482 -0.064202 144 5 10028 RUF6 5_flank/RUF6 no 1251 46.145147 287.406528 166.7758375 2.22213313 0.228782 144 6 13142 MT_COX1 intronic no 13084 6331 6350 31.494296 333.209734 182.352015 2.260910567 -0.242222 144 7 7531 snR79 5_flank/snR79 no 284 37.143966 309.492335 173.3181505 2.238844046 -0.000236 144 8 5369 snR31 5_flank no 425 56.67433 327.839227 192.2567785 2.283881661 -0.06876 144 9 13088 MT_COX1 ai3 no 13084 5521 5542 30.771445 326.566582 178.6690135 2.25204924 -0.202068 144 10 12596 MT_15S 15S yes 1848 691 715 28.739706 303.252785 165.9962455 2.220098265 -0.126606 144 11 12919 MT_COX1 ai2 no 13084 2986 2998 61.094757 317.454774 189.2747655 2.277092717 0.039432 144 12 7052 snR62 snR62 yes 300 51 70 28.750088 312.069937 170.4100125 2.231495108 -0.178591 144 13 2482 Pro1 ProAGG 5_flank no 272 32.70419 274.817031 153.7606105 2.186845095 0.190023 144 14 13274 MT_COX1 exon5a yes 13084 8311 8330 30.803163 304.039563 167.421363 2.223810873 -0.058566 144 15 14732 MT_Cys; His tRNAhis yes 456 301 318 34.786766 362.05894 198.422853 2.29759169 -0.444541 144 16 15786 YDL029W intron no 223 81 95 32.882796 303.300636 168.091716 2.225546311 0.008065 144 17 18534 YMR230W intron no 510 61 80 32.953281 292.432506 162.6928935 2.211368583 0.083557 144 18 13272 MT_COX1 exon5a yes 13084 8281 8302 33.042428 304.421056 168.731742 2.22719679 0.000957 144 19 11871 "rRNA(18S,5.8S,25S)" 25S yes 7956 6241 6258 22546.95878 24992.64663 23769.8027 4.376025577 -0.929714 144 20 11688 "rRNA(18S,5.8S,25S)" 25S yes 7956 5326 5344 29925.19332 31856.53309 30890.8632 4.489830044 -0.985594 144 21 9376 RUF1 RUF1 yes 750 456 472 43.578226 333.698941 188.6385835 2.275630527 -0.18759 144 22 10145 RUF6 RUF6 yes 1251 571 588 37.808737 296.701776 167.2552565 2.223379776 0.11931 144 23 9136 snR7 U5 RNA 5_flank no 415 29.966455 328.267589 179.117022 2.25313686 -0.228487 144 24 3363 Thr4 ThrTGT_ii 5_flank no 272 34.332746 298.524171 166.4284585 2.221227591 0.06516 144 25 17716 YKL081W intron no 426 321 342 32.550042 321.8207 177.185371 2.248427862 -0.142622 144 26 18769 YNL246W intron no 195 101 120 32.799993 322.744804 177.7723985 2.249864332 -0.146541 144 27 2796 Pro6 ProTGG_v tRNA yes 302 42 54 95.04032 389.31368 242.177 2.384132895 -0.220003 144 28 18295 YML073C intron no 515 101 118 35.310185 329.18109 182.2456375 2.260657141 -0.177184 144 29 9525 RUF3 RUF3 yes 631 11 27 33.340597 304.915219 169.127908 2.228215277 0.000669 144 30 1727 Leu7 LeuTAA 5_flank no 284 37.709916 288.293017 163.0014665 2.212191512 0.190193 144 31 7856 snoRNA cluster1 intergenic no 1574 1076 1092 37.787109 304.914998 171.3510535 2.233886779 0.042964 144 32 7577 snR189 5_flank no 389 33.540994 293.779718 163.660356 2.213943492 0.093554 144 33 18711 YNL130C intron no 541 301 317 29.256027 302.415182 165.8356045 2.219677778 -0.102513 144 34 17290 YHR141C intron no 541 321 340 29.193265 320.84601 175.0196375 2.24308678 -0.21368 144 35 15267 MT_9S 9S yes 701 181 208 33.33776 311.426517 172.3821385 2.236492264 -0.051585 144 36 16833 YGL178W intron no 740 441 457 43.808717 305.024608 174.4166625 2.241587972 0.058189 144 37 12371 5S rRNA NTS2 no 1420 811 823 37.313814 295.043327 166.1785705 2.220575019 0.128622 144 38 3328 Thr3 ThrTGT_i 5_flank/tRNA no 272 30.881004 298.115756 164.49838 2.216161625 -0.019703 144 39 6705 snR49 snR49 yes 365 51 67 37.006851 301.691159 169.349005 2.228782649 0.070137 144 40 1146 His1 HisGTG 5_flank no 272 30.547786 295.069905 162.8088455 2.211677997 -0.012124 144 41 14723 MT_Cys; His tRNACys/intergenic no 456 166 188 30.274393 335.639789 182.957091 2.262349246 -0.276537 144 42 6991 snR60 snR60 yes 304 36 53 29.922319 289.335479 159.628899 2.203111518 -0.00139 144 43 5868 snR35 snR35/3_flank no 740 49.630369 320.924883 185.277626 2.267822977 -0.052614 144 44 16754 YGL076C intron/exon no 559 501 521 29.127046 295.363279 162.2451625 2.210171757 -0.070702 144 45 15544 YBR078W intron no 430 241 256 28.796022 294.721045 161.7585335 2.208867201 -0.085563 144 46 10669 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 231 248 36.341413 302.018064 169.1797385 2.228348349 0.059947 144 47 3268 Thr2 ThrCGT 5_flank no 272 28.480539 314.661776 171.5711575 2.234444281 -0.203655 144 48 17360 YIL052C intron no 572 101 122 28.499197 293.963873 161.231535 2.207449989 -0.098237 144 49 21282 YPL143W spliced yes 40 1 17 42.213703 303.971745 173.092724 2.238278813 0.062392 144 50 10822 "rRNA(18S,5.8S,25S)" 18S yes 7956 996 1016 30.67336 300.609015 165.6411875 2.219168335 -0.042083 144 51 12573 MT_15S 15S yes 1848 346 365 30.825761 304.22375 167.5247555 2.224078993 -0.058915 144 52 14934 MT_Asn tRNA yes 271 136 153 46.805045 339.527254 193.1661495 2.285931023 -0.215754 144 53 12077 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7271 7293 37.134032 323.664923 180.3994775 2.256235275 -0.125367 144 54 17324 YIL004C intron no 231 101 118 63.561609 312.042174 187.8018915 2.273699962 0.097042 144 55 14863 MT_Ser2; Arg2 tRNAArg2 yes 360 211 232 29.663306 305.691445 167.6773755 2.224474468 -0.107916 144 56 1960 Lys2 LysCTT_ii tRNA yes 273 1 13 31.95178 267.336738 149.644259 2.17506006 0.205875 144 57 4368 telomerase RNA telomerase yes 1501 876 894 34.251825 320.61439 177.4331075 2.249034659 -0.11224 144 58 9219 snR6 / U6 RNA 5_flank no 312 30.345383 332.508508 181.4269455 2.258701789 -0.252403 144 59 21176 YNR053C spliced yes 40 5 19 49.160334 306.95113 178.055732 2.250555959 0.062568 144 60 5400 snR31 snR31 yes 425 66 80 71.505198 354.848075 213.1766365 2.328739606 -0.168649 144 61 20599 YHR041C spliced yes 40 9 23 68.326511 302.049782 185.1881465 2.267613185 0.205135 144 62 13287 MT_COX1 exon5a yes 13084 8506 8525 30.698863 311.360723 171.029793 2.23307177 -0.105917 144 63 14643 MT_21S intronic no 4639 3856 3882 30.752979 319.451871 175.102425 2.243292161 -0.151312 144 64 2454 Phe5 PheGAA_v intron/tRNA no 291 i4 39 34.970203 301.112301 168.041252 2.225415909 0.051444 144 65 17171 YHR021C 5_exon no 650 1 17 74.079244 306.523927 190.3015855 2.279442407 0.202228 144 66 6454 snR45 snR45 yes 372 116 135 30.75709 294.984791 162.8709405 2.211843604 -0.004463 144 67 13069 MT_COX1 intronic/exon3 no 13084 5236 5252 92.275676 356.328898 224.302287 2.350833702 -0.038686 144 68 20588 YHR021C spliced yes 40 13 32 28.521097 306.169424 167.3452605 2.223613417 -0.151796 144 69 17126 YHR010W intron no 661 241 261 28.448747 320.027663 174.238205 2.241143388 -0.235954 144 70 13095 MT_COX1 ai3 no 13084 5626 5644 32.552561 307.9554 170.2539805 2.231097274 -0.033754 144 71 7006 snR60 3_flank no 304 32.591363 304.077619 168.334491 2.22617311 -0.001944 144 72 7425 snR69 snR69 yes 301 26 43 49.418935 318.081 183.7499675 2.264227271 -0.030166 144 73 20851 YLR061W spliced yes 40 5 20 60.267555 303.899698 182.0836265 2.260270895 0.145134 144 74 5742 snR34 3_flank no 750 28.924234 282.590992 155.757613 2.192449283 -0.022694 144 75 12497 MT_tRNA Pro tRNA yes 272 106 122 50.422957 306.507121 178.465039 2.251553151 0.072618 144 76 424 Asp1 AspGTC_i 5_flank no 271 29.317492 308.581647 168.9495695 2.227757089 -0.137487 144 77 15308 YAL001C intron/exon no 190 141 158 33.768408 298.675474 166.221941 2.220688349 0.057046 144 78 7107 snR63 snR63 yes 455 41 59 33.912485 304.380017 169.146251 2.228262376 0.012052 144 79 19179 YPL079W intron no 521 261 280 29.691991 311.002929 170.34746 2.231335662 -0.138623 144 80 19957 YBL059C-A spliced yes 40 9 26 32.990376 291.034428 162.012402 2.209548261 0.093555 144 81 14498 MT_21S 21S_rRNA3 yes 4639 1681 1698 487.975723 633.1262 560.5509615 2.748615102 0.374366 144 82 14036 MT_COB bi4 no 7308 4726 4750 29.675553 325.551975 177.613764 2.249476618 -0.223379 144 83 5297 snR30 snR30 yes 801 336 353 31.692811 315.156311 173.424561 2.239110604 -0.101959 144 84 15249 MT_fMet tRNA/3_flank no 274 166 190 29.353036 329.58216 179.467598 2.25398605 -0.257442 144 85 18308 YML073C intron no 515 361 378 33.358143 303.174964 168.2665535 2.225997799 0.015032 144 86 9386 RUF1 RUF1 yes 750 506 523 39.389328 325.680617 182.5349725 2.261346085 -0.136688 144 87 8761 LSR1 / U2 RNA U2 yes 1375 446 461 158.008008 420.434604 289.221306 2.461230283 -0.002033 144 88 9672 RUF4 RUF4 yes 988 136 153 32.536269 284.7941 158.6651845 2.200481641 0.11899 144 89 8869 LSR1 / U2 RNA U2 yes 1375 986 1002 40.560922 299.392063 169.9764925 2.230388863 0.100505 144 90 18627 YNL096C intron no 445 161 178 30.107089 292.414212 161.2606505 2.207528407 -0.010652 144 91 10192 RUF6 RUF6 yes 1251 806 822 42.237808 302.855848 172.546828 2.23690698 0.072561 144 92 15808 YDL061C intron no 509 301 317 45.213434 288.873986 167.04371 2.222830127 0.211907 144 93 7070 snR62 3_flank no 300 38.06944 344.080743 191.0750915 2.281204076 -0.292293 144 94 19779 Negative Control no 60 NA #VALUE! 41.250092 299.91898 170.584536 2.231939659 0.09713 144 95 10462 RUF8 RUF8 yes 1151 236 252 36.352901 324.773976 180.5634385 2.256629816 -0.136866 144 96 6879 snR56 snR56 yes 288 26 40 61.666437 283.08536 172.3758985 2.236476543 0.335605 144 97 2211 Phe1 PheGAA_i 5_flank no 292 37.043672 303.161801 170.1027365 2.2307113 0.057261 144 98 7800 snoRNA cluster1 snR75 yes 1574 796 814 37.423171 322.000964 179.7120675 2.254577241 -0.110258 144 99 20483 YGL226C-A spliced yes 40 17 34 33.485637 301.209123 167.34738 2.223618917 0.032688 144 100 9423 RUF2 5_flank no 468 33.695806 297.050418 165.373112 2.218464899 0.069637 144 101 19985 YBL091C-A spliced yes 40 21 38 33.813991 287.563436 160.6887135 2.205985374 0.141395 144 102 12205 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7911 7928 49.054417 292.50594 170.7801785 2.232437463 0.189286 144 103 4402 telomerase RNA telomerase yes 1501 1046 1065 33.816282 313.667163 173.7417225 2.239904123 -0.063401 144 104 9945 RUF5-1 RUF5-1 yes 975 531 545 42.475901 333.846537 188.161219 2.274530118 -0.193871 145 2 11064 "rRNA(18S,5.8S,25S)" 18S yes 7956 2206 2221 38399.89768 21287.06871 29843.48319 4.474849511 -0.010894 145 3 10123 RUF6 RUF6 yes 1251 461 479 32.888264 296.366703 164.6274835 2.21650234 0.05689 145 4 766 Gln4 GlnTTG_iii 3_flank no 272 34.582178 305.41183 169.997004 2.230441268 0.011786 145 5 8354 snoRNA cluster4 3_flank no 638 556 575 36.206915 321.142673 178.674794 2.25206329 -0.105817 145 6 4295 telomerase RNA telomerase yes 1501 511 527 30.709095 297.320875 164.014985 2.214883529 -0.020617 145 7 21277 YPL129W spliced yes 40 5 22 31.369739 281.308017 156.338878 2.194066991 0.10354 145 8 18495 YMR194W intron no 563 261 278 55.937037 308.718897 182.327967 2.26085329 0.082278 145 9 2060 Lys4 LysTTT_ii 5_flank no 296 32.828859 294.831301 163.83008 2.214393643 0.064566 145 10 15871 YDL079C intron/exon no 392 341 358 34.635385 321.128257 177.881821 2.250131567 -0.111587 145 11 1278 Ile2 IleTAT_i intron/tRNA no 333 i49 42 34.54861 283.066843 158.8077265 2.200871628 0.192856 145 12 7357 snR68 snR68 yes 336 6 25 34.515202 328.457619 181.4864105 2.258844111 -0.173115 145 13 4664 snR3 3_flank no 395 32.567608 306.93056 169.749084 2.229807439 -0.025325 145 14 19166 YPL079W 5_exon no 521 1 18 54.139716 307.81177 180.975743 2.257620368 0.080204 145 15 19764 Negative Control no 60 NA #VALUE! 34.586595 308.634989 171.610792 2.234544596 -0.014105 145 16 14238 MT_Ser 5_flank no 290 46 74 32.695263 317.806314 175.2507885 2.243659981 -0.109758 145 17 11506 "rRNA(18S,5.8S,25S)" 25S yes 7956 4416 4434 48.540144 353.725892 201.133018 2.30348337 -0.312103 145 18 3441 Trp1 TrpCCA tRNA yes 306 37 i19 28.9661 282.594359 155.7802295 2.192512339 -0.020462 145 19 9215 snR6 / U6 RNA 5_flank no 312 37.018143 288.413868 162.7160055 2.211430274 0.181491 145 20 12314 5S rRNA NTS2 no 1420 526 540 37.234044 316.036854 176.635449 2.247077867 -0.058483 145 21 18712 YNL130C intron no 541 321 339 29.474312 281.561894 155.518103 2.19178095 0.011436 145 22 12463 5S rRNA 5S yes 1420 1271 1283 64.242752 296.788888 180.51582 2.256515269 0.227567 145 23 2861 Pro7 ProTGG_vi 3_flank no 303 31.991008 293.96046 162.975734 2.212122946 0.043016 145 24 14866 MT_Ser2; Arg2 tRNAArg2/3_flank no 360 256 284 32.260266 323.828299 178.0442825 2.250528032 -0.161694 145 25 4207 telomerase RNA telomerase yes 1501 71 90 38.732061 289.505991 164.119026 2.215158931 0.190112 145 26 2997 Ser2 SerAGA_ii 5_flank no 282 32.743757 299.936232 166.3399945 2.220996683 0.030249 145 27 21313 YPL241C spliced yes 40 21 35 44.508119 276.3864 160.4472595 2.205332304 0.332382 145 28 4912 snR9 5_flank no 387 80.818812 307.538893 194.1788525 2.28820193 0.23417 145 29 14335 MT_VAR1 VAR1 yes 1467 1231 1255 29.038022 312.707006 170.872514 2.232672209 -0.17194 145 30 3713 Val3 ValCAC tRNA yes 273 46 58 103.424504 342.640047 223.0322755 2.348367715 0.120661 145 31 5884 snR35 3_flank no 740 37.754551 290.408164 164.0813575 2.21505924 0.172617 145 32 13974 MT_COB bi3 no 7308 3796 3817 31.397892 306.336866 168.867379 2.227545763 -0.052456 145 33 21209 YOR096W spliced yes 40 9 25 33.511572 287.523171 160.5173715 2.205522039 0.132272 145 34 4678 snR4 5_flank no 386 33.432571 311.943086 172.6878285 2.237261728 -0.054505 145 35 7442 snR69 3_flank no 301 31.191463 292.144532 161.6679975 2.208624059 0.027995 145 36 9736 RUF4 RUF4 yes 988 456 471 39.504314 291.49717 165.500742 2.218799945 0.172763 145 37 20548 YGR225W spliced yes 40 5 19 33.026197 288.68607 160.8561335 2.206437625 0.109605 145 38 21828 copy of SH16123 no 639 39.17763 309.036073 174.1068515 2.240815862 0.008753 145 39 7731 snoRNA cluster1 intergenic no 1574 451 470 30.667393 304.575501 167.621447 2.224329585 -0.066421 145 40 17226 YHR077C 5_exon no 213 1 20 30.48616 306.399235 168.4426975 2.226452188 -0.083602 145 41 14905 MT_Ile 3_flank no 276 226 254 28.17998 317.926759 173.0533695 2.23818006 -0.23374 145 42 12179 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7781 7801 27.859614 292.893242 160.376428 2.205140536 -0.128645 145 43 9541 RUF3 RUF3 yes 631 91 107 29.478473 282.031674 155.7550735 2.192442202 0.009436 145 44 3105 Ser4 SerGCT 5_flank no 301 40.919158 304.71785 172.818504 2.237590241 0.052042 145 45 10747 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 621 634 59.064039 306.258443 182.661241 2.261646404 0.119134 145 46 15494 YBL092W intron no 433 261 277 30.378985 290.557749 160.468367 2.205389433 0.010462 145 47 13785 MT_COB intronic no 7308 961 987 28.335346 316.298175 172.3167605 2.236327521 -0.218543 145 48 7947 snoRNA cluster1 3_flank no 1574 1531 1547 63.224992 311.426343 187.3256675 2.272597289 0.100142 145 49 17860 YLL050C 5_exon no 279 1 22 34.276426 314.145699 174.2110625 2.241075729 -0.061572 145 50 1941 Lys2 LysCTT_ii 5_flank no 273 28.652579 310.107733 169.380156 2.228862529 -0.170525 145 51 17232 YHR077C intron no 213 121 140 30.809225 290.383133 160.596179 2.205735208 0.026254 145 52 14106 MT_COB bi4 no 7308 5776 5799 27.090142 306.377437 166.7337895 2.222023621 -0.232099 145 53 8366 snoRNA cluster4 3_flank no 638 616 637 31.260027 313.199091 172.229559 2.23610769 -0.09784 145 54 17455 YIL148W intron no 534 201 218 41.540971 303.752234 172.6466025 2.237158036 0.062287 145 55 5594 snR33 3_flank no 383 31.762485 315.660045 173.711265 2.239827983 -0.104996 145 56 8348 snoRNA cluster4 snR53/3_flank no 638 526 543 29.977793 304.179215 167.078504 2.222920578 -0.087773 145 57 20003 YBR078W spliced yes 40 17 33 46.611769 296.944233 171.778001 2.234967545 0.140666 145 58 19000 YOR122C intron no 309 181 200 30.328529 295.364807 162.846668 2.211778877 -0.021485 145 59 12304 5S rRNA NTS2 no 1420 476 492 32.491415 304.648491 168.569953 2.226780166 -0.007851 145 60 8022 snoRNA cluster 2 snR55 yes 739 346 363 30.48848 275.300821 152.8946505 2.184392291 0.093945 145 61 21375 Leu8_9 spliced yes 40 13 30 31.570555 294.404302 162.9874285 2.212154108 0.026423 145 62 19386 YPR043W intron no 503 301 318 32.656681 299.919719 166.2882 2.220861432 0.02757 145 63 9284 RUF1 5_flank/RUF1 no 750 30.630887 302.382393 166.50664 2.221431557 -0.054359 145 64 13884 MT_COB intronic no 7308 2446 2470 30.673372 310.086692 170.380032 2.231418695 -0.099235 145 65 15801 YDL061C intron no 509 161 180 32.77751 311.414987 172.0962485 2.235771403 -0.058511 145 66 12927 MT_COX1 ai2 no 13084 3106 3125 30.686077 302.272519 166.479298 2.221360236 -0.05181 145 67 10411 RUF8 5_flank no 1151 32.727794 294.016684 163.372239 2.213178261 0.06644 145 68 12537 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 451 465 36.830967 290.310139 163.570553 2.213705122 0.163197 145 69 7429 snR69 snR69 yes 301 46 63 30.556512 266.786638 148.671575 2.172227942 0.139241 145 70 18869 YNR053C intron no 631 361 377 39.903347 305.991877 172.947612 2.23791457 0.038089 145 71 8374 snoRNA cluster 5 5_flank no 586 36 55 28.543734 298.199831 163.3717825 2.213177048 -0.114862 145 72 15977 YDL136W intron no 505 121 138 30.755133 296.283202 163.5191675 2.213568667 -0.012615 145 73 3836 RNaseP RNaseP yes 569 146 158 101.353456 332.346891 216.8501735 2.336159774 0.176731 145 74 16840 YGL178W intron no 740 581 598 30.134415 274.837338 152.4858765 2.18322962 0.078039 145 75 21772 copy of SH13812 no 7308 29.30794 315.239108 172.273524 2.236218538 -0.177127 145 76 21380 Lys3_4 spliced yes 40 9 24 35.980207 305.693115 170.836661 2.232581075 0.025921 145 77 11464 "rRNA(18S,5.8S,25S)" 25S yes 7956 4206 4223 3520.91375 7541.585946 5531.249848 3.742823276 -1.201831 145 78 20689 YIL133C spliced yes 40 13 29 74.916252 330.168836 202.542544 2.306516261 0.026947 145 79 11741 "rRNA(18S,5.8S,25S)" 25S yes 7956 5591 5606 122.469803 382.837149 252.653476 2.402525278 -0.006979 145 80 4525 U3b (snR17b) U3b yes 662 181 197 60.872556 294.251281 177.5619185 2.249349829 0.231617 145 81 21276 YPL129W spliced yes 40 1 18 32.234516 294.423774 163.329145 2.213063689 0.048034 145 82 19653 SIR1 2.2 SIR1 2.2 yes 401 181 198 35.422066 283.757772 159.589919 2.203005454 0.203464 145 83 19798 Negative Control no 60 NA #VALUE! 40.677087 289.932572 165.3048295 2.218285542 0.190472 145 84 17404 YIL069C intron no 509 421 435 38.221772 297.969193 168.0954825 2.225556042 0.108392 145 85 13554 MT_COX1 intronic/exon6 no 13084 12511 12530 31.486704 289.99163 160.739167 2.206121713 0.051451 145 86 13600 MT_ATP8/AAP1 MT_AAP1 yes 347 136 157 31.221177 303.956016 167.5885965 2.224244464 -0.043984 145 87 2831 Pro7 ProTGG_vi 5_flank no 303 30.982035 305.606527 168.294281 2.226069358 -0.061984 145 88 5131 snR11 snR11/3_flank no 458 32.874332 287.0274 159.950866 2.203986596 0.115402 145 89 16149 YDR092W intron no 368 261 278 47.320978 338.298515 192.8097465 2.285128984 -0.203491 145 90 14711 MT_Thr2 3_flank no 276 241 269 30.516234 331.283526 180.89988 2.257438279 -0.240957 145 91 3810 RNaseP RNaseP yes 569 16 33 32.493436 294.744014 163.618725 2.213833004 0.054387 145 92 13340 MT_COX1 ai5a no 13084 9301 9323 30.369649 327.269959 178.819804 2.252415615 -0.212827 145 93 8189 snoRNA cluster 3; snR70/intergenic no 743 456 475 32.418269 311.090283 171.754276 2.234907558 -0.060496 145 94 3179 Ser5 SerTGA tRNA yes 282 16 30 85.386404 321.343673 203.3650385 2.308276293 0.157084 145 95 16773 YGL103W intron no 611 141 157 46.169009 305.643436 175.9062225 2.245281202 0.060104 145 96 19373 YPR043W exon/intron no 503 41 62 30.78812 309.555776 170.171948 2.23088797 -0.092181 145 97 4993 snR10 5_flank/snR10 no 445 37.409674 296.289267 166.8494705 2.222324833 0.11927 145 98 7145 snR63 snR63 yes 455 231 248 33.504871 286.308048 159.9064595 2.203866008 0.139861 145 99 5361 snR30 3_flank no 801 29.497031 305.449401 167.473216 2.22394536 -0.112327 145 100 1702 Leu6 LeuGAG tRNA/3_flank no 282 34.012826 303.252113 168.6324695 2.2269412 0.02245 145 101 3857 RNaseP RNaseP yes 569 251 265 36.332175 294.822632 165.5774035 2.219001068 0.119433 145 102 861 Glu2 GluTTC_i tRNA/3_flank no 272 29.852835 300.152729 165.002782 2.217491267 -0.0676 145 103 8882 LSR1 / U2 RNA U2 yes 1375 1051 1065 36.425171 300.400618 168.4128945 2.22637534 0.074171 145 104 3673 Val2 ValAAC_ii 3_flank no 274 31.99571 312.949961 172.4728355 2.236720703 -0.080658 146 2 3727 Val3 ValCAC 3_flank no 273 33.481114 321.496834 177.488974 2.249171379 -0.128456 146 3 18156 YLR426W intron no 171 61 78 37.387956 350.44543 193.916693 2.287615196 -0.345141 146 4 10853 "rRNA(18S,5.8S,25S)" 18S yes 7956 1151 1166 45.35642 266.996721 156.1765705 2.193615882 0.43068 146 5 16846 YGL178W 3_exon no 740 701 717 72.918908 315.311973 194.1154405 2.288060082 0.125899 146 6 20919 YLR344W spliced yes 40 17 32 42.158461 300.984523 171.571492 2.234445128 0.089295 146 7 6925 snR58 5_flank/snR58 no 296 30.580681 297.624424 164.1025525 2.215115336 -0.026871 146 8 17986 YLR275W intron no 190 81 102 31.264964 295.534877 163.3999205 2.213251841 0.009209 146 9 8546 snR19 / U1 RNA U1 yes 868 226 240 79.630594 319.707589 199.6690915 2.300310842 0.133876 146 10 4112 SRP SRP yes 875 451 465 52.457067 316.370965 184.414016 2.265793926 -0.000164 146 11 4765 snR5 5_flank/snR5 no 404 33.590985 299.14147 166.3662275 2.221065169 0.051011 146 12 15884 YDL082W intron no 465 221 240 30.566451 279.475576 155.0210135 2.190390572 0.077872 146 13 4867 snR8 snR8 yes 390 116 128 40.222051 290.011778 165.1169145 2.217791564 0.188681 146 14 4638 snR3 snR3 yes 395 106 123 32.41347 290.254616 161.334043 2.207726017 0.080073 146 15 18764 YNL246W 5_exon no 195 1 16 42.144165 291.687886 166.9160255 2.222498035 0.176842 146 16 10264 RUF7 5_flank no 700 38.312686 285.463032 161.887859 2.209214279 0.221138 146 17 19121 YPL031C intron/exon no 202 141 159 30.625115 296.198392 163.4117535 2.21328329 -0.016512 146 18 13002 MT_COX1 ai2 no 13084 4231 4250 30.76342 323.171409 176.9674145 2.247893306 -0.176348 146 19 3584 Val1 ValAAC_i 5_flank no 274 44.769161 352.116379 198.44277 2.297635281 -0.322784 146 20 20047 YBR191W spliced yes 40 5 22 56.080612 354.898713 205.4896625 2.312789979 -0.27305 146 21 19037 YOR234C intron no 627 121 140 29.413568 312.806488 171.110028 2.233275462 -0.159107 146 22 5771 snR35 snR35 yes 740 41 59 33.693629 286.808743 160.251186 2.204801252 0.14251 146 23 13195 MT_COX1 exon4 yes 13084 7126 7148 31.947518 299.385361 165.6664395 2.219234538 0.007927 146 24 12237 5S rRNA NTS2 no 1420 141 162 30.156821 299.78447 164.9706455 2.217406674 -0.05476 146 25 3983 RNase MRP RNaseMRP/3_flank no 540 34.501764 285.678111 160.0899375 2.204364035 0.174532 146 26 9763 RUF4 RUF4 yes 988 591 613 30.561467 328.59252 179.5769935 2.254250696 -0.220187 146 27 12876 MT_COX1 ai1 no 13084 2341 2360 30.726036 287.480656 159.103346 2.201679313 0.041926 146 28 21749 copy of SH12970 no 13084 30.877057 306.987439 168.932248 2.227712561 -0.073829 146 29 5133 snR11 3_flank no 458 35.240214 306.660921 170.9505675 2.232870547 0.009504 146 30 5255 snR30 snR30 yes 801 126 138 102.014911 351.323894 226.6694025 2.3553929 0.05573 146 31 2940 Ser1 SerAGA_i 5_flank no 283 29.14386 325.975341 177.5596005 2.249344159 -0.24465 146 32 14909 MT_Tyr 5_flank no 284 31 59 29.200756 317.751794 173.476275 2.239240088 -0.19557 146 33 19453 CYC1 CYC1 yes 400 161 183 35.576579 317.081405 176.328992 2.246323725 -0.07186 146 34 1935 Lys1 LysCTT_i 3_flank no 272 33.364436 300.3715 166.867968 2.222372977 0.038069 146 35 17280 YHR141C intron no 541 121 137 41.69321 298.179792 169.936501 2.230286672 0.114355 146 36 21554 copy of SH4780 no 404 64.789536 342.412553 203.6010445 2.308780002 -0.127 146 37 12544 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7/3_flank no 664 556 582 30.792792 307.562444 169.177618 2.228342906 -0.080128 146 38 4538 U3b (snR17b) U3b yes 662 246 267 28.573829 306.312599 167.443214 2.223867552 -0.150728 146 39 21411 Ser3 spliced yes 40 21 35 44.008229 297.213223 170.610726 2.232006331 0.129996 146 40 15590 YBR084C 3_exon no 606 561 580 28.292104 306.097116 167.19461 2.223222273 -0.163426 146 41 5336 snR30 snR30 yes 801 531 547 34.205302 300.430648 167.317975 2.2235426 0.047888 146 42 21546 copy of SH4255 no 1501 27.783717 318.50261 173.1431635 2.238405348 -0.251859 146 43 14422 MT_21S 21S_rRNA3 yes 4639 541 563 27.425505 289.486258 158.4558815 2.199908364 -0.137466 146 44 1040 Gly3 GlyGCC 5_flank no 271 34.920082 300.466574 167.693328 2.224515784 0.056156 146 45 16157 YDR129C intron no 211 61 77 38.379349 314.324007 176.351678 2.246379596 -0.040532 146 46 2367 Phe3 PheGAA_iii 3_flank no 291 38.027827 300.505209 169.266518 2.22857106 0.084248 146 47 19641 RNA14 2.2 RNA14 2.2 yes 401 321 335 59.12867 312.806443 185.9675565 2.269437185 0.065055 146 48 10671 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 241 257 37.899185 301.222045 169.560615 2.229324983 0.077281 146 49 21440 TH302 - control oligo; WTP_222 no 30.360437 297.220278 163.7903575 2.214288331 -0.031917 146 50 12727 MT_COX1 exon1 yes 13084 106 126 29.626105 294.22448 161.9252925 2.20931469 -0.039161 146 51 9722 RUF4 RUF4 yes 988 386 403 32.835278 301.242787 167.0390325 2.222817966 0.024291 146 52 20734 YJL189W spliced yes 40 17 31 67.041804 298.968057 183.0049305 2.262462791 0.224291 146 53 19198 YPL081W intron no 601 121 135 49.468161 294.186313 171.827237 2.235092007 0.176227 146 54 20117 YDL075W spliced yes 40 17 32 39.751546 290.960396 165.355971 2.218419882 0.178482 146 55 16693 YGL031C 5_exon no 556 1 15 44.130109 310.890198 177.5101535 2.2492232 0.006984 146 56 6813 snR52 5_flank no 292 36.218861 292.221743 164.220302 2.215426846 0.140038 146 57 14674 MT_21S 21S_rRNA4 yes 4639 4321 4343 30.237096 324.073419 177.1552575 2.248354046 -0.195423 146 58 21247 YPL031C spliced yes 40 9 28 32.387859 290.289764 161.3388115 2.207738853 0.079025 146 59 8710 LSR1 / U2 RNA U2 yes 1375 191 210 32.433758 275.751173 154.0924655 2.187781404 0.175104 146 60 7077 snR62 3_flank no 300 31.41543 294.469256 162.942343 2.212033957 0.020873 146 61 2219 Phe1 PheGAA_i 5_flank no 292 55.263579 320.867553 188.065566 2.274309285 -0.021231 146 62 18460 YMR143W intron no 644 201 218 30.407063 308.272491 169.339777 2.228758984 -0.097537 146 63 8373 snoRNA cluster 5 5_flank no 586 31 51 30.440045 298.899159 164.669602 2.216613436 -0.039554 146 64 14775 MT_ORF11; Leu; Gln intergenic no 716 511 539 28.41567 311.88976 170.152715 2.230838883 -0.189745 146 65 8500 snR19 / U1 RNA 5_flank/U1 no 868 36.735202 302.980849 169.8580255 2.230086071 0.056544 146 66 161 Arg2 ArgACG_ii 5_flank no 273 47.165441 331.346075 189.255758 2.277049102 -0.149483 146 67 7152 snR63 3_flank no 455 37.79837 295.254374 166.526372 2.22148302 0.132197 146 68 8677 LSR1 / U2 RNA U2 yes 1375 26 43 32.602067 310.118187 171.360127 2.233909775 -0.05042 146 69 2847 Pro7 ProTGG_vi tRNA-intron no 303 i5 i21 30.535261 305.519222 168.0272415 2.225379698 -0.076626 146 70 296 Arg4 ArgCCT 3_flank no 272 34.728244 282.534289 158.6312665 2.200388792 0.201738 146 71 12050 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7136 7151 41.106141 310.056098 175.5811195 2.244477814 0.004244 146 72 19854 Negative Control no 60 NA #VALUE! 43.433645 286.961919 165.197782 2.218004212 0.225234 146 73 846 Glu2 GluTTC_i 5_flank/tRNA no 272 58.635997 343.293405 200.964701 2.303119781 -0.173083 146 74 10345 RUF7 RUF7 yes 700 336 353 31.325707 295.179612 163.2526595 2.212860265 0.01345 146 75 14099 MT_COB bi4 no 7308 5671 5692 31.600183 313.570415 172.585299 2.237003799 -0.090703 146 76 1476 Leu2 LeuCAA_ii 3_flank no 314 42.714163 305.451917 174.08304 2.240756462 0.050746 146 77 11182 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2796 2811 38.660778 298.633988 168.647383 2.226979606 0.103208 146 78 4122 SRP SRP yes 875 501 513 411.074922 586.802172 498.938547 2.698047058 0.309706 146 79 10626 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 16 33 32.468314 315.131734 173.800024 2.240049832 -0.091756 146 80 21431 Tyr1_2 spliced yes 40 17 33 34.761249 307.658064 171.2096565 2.233528256 -0.004185 146 81 13803 MT_COB intronic no 7308 1231 1247 30.333913 309.562614 169.9482635 2.230316731 -0.107741 146 82 8715 LSR1 / U2 RNA U2 yes 1375 216 233 36.837807 303.796344 170.3170755 2.231258191 0.05091 146 83 15191 MT_COX3 cox3 no 1010 286 308 32.229885 299.1204 165.6751425 2.219257353 0.018746 146 84 14440 MT_21S 21S_rRNA3 yes 4639 811 830 45.007989 319.906155 182.457072 2.261160701 -0.068232 146 85 14096 MT_COB bi4 no 7308 5626 5650 31.667939 325.617509 178.642724 2.251985332 -0.182984 146 86 21063 YMR201C spliced yes 40 5 21 39.921451 304.064863 171.993157 2.235511168 0.055782 146 87 19737 Negative Control no 60 NA #VALUE! 33.274832 295.208709 164.2417705 2.215483618 0.0763 146 88 14861 MT_Ser2; Arg2 tRNASer/tRNAArg2 no 360 181 202 30.995366 316.257038 173.626202 2.239615265 -0.124608 146 89 4043 SRP SRP yes 875 106 125 28.794769 305.016709 166.905739 2.22247127 -0.134879 146 90 2776 Pro6 ProTGG_v 5_flank no 302 28.731428 294.393325 161.5623765 2.208340233 -0.087571 146 91 16215 YDR381W intron no 866 201 218 32.86164 320.01532 176.43848 2.246593308 -0.124775 146 92 15556 YBR082C intron no 195 61 77 132.500837 366.246723 249.37378 2.396850788 0.146152 146 93 1263 Ile2 IleTAT_i tRNA yes 333 11 25 140.686987 364.001168 252.3440775 2.401993116 0.204664 146 94 11798 "rRNA(18S,5.8S,25S)" 25S yes 7956 5876 5893 38360.47117 13111.01669 25735.74393 4.410536727 0.792487 146 95 579 Gln1 GlnCTG 5_flank no 272 39.305553 303.180534 171.2430435 2.233612938 0.0625 146 96 13083 MT_COX1 ai3 no 13084 5446 5468 35.331331 306.406168 170.8687495 2.232662641 0.012627 146 97 16496 YER117W intron no 571 101 118 35.6317 315.344968 175.488334 2.244248251 -0.056376 146 98 19916 YAL003W spliced yes 40 21 37 35.955301 296.326631 166.140966 2.220476731 0.10254 146 99 2964 Ser1 SerAGA_i tRNA yes 283 e3 54 42.77739 281.164849 161.9711195 2.209437584 0.280867 146 100 3893 RNaseP 3_flank no 569 38.684345 301.762059 170.223202 2.231018756 0.074149 146 101 834 Glu2 GluTTC_i 5_flank no 272 32.272663 296.506519 164.389591 2.215874315 0.036291 146 102 4599 snR3 5_flank no 395 47.864526 332.130017 189.9972715 2.278747364 -0.152108 146 103 1644 Leu5 LeuCAA_v tRNA yes 315 e23 60 209.961222 382.165314 296.063268 2.471384529 0.437265 146 104 3630 Val1 ValAAC_i 3_flank no 274 32.399513 312.101701 172.250607 2.236160761 -0.068757 147 2 14653 MT_21S 21S_rRNA4 yes 4639 4006 4020 31.475887 302.613956 167.0449215 2.222833277 -0.027352 147 3 5441 snR31 3_flank no 425 31.172855 322.117509 176.645182 2.247101797 -0.162801 147 4 6757 snR50 5_flank no 290 30.832665 267.299778 149.0662215 2.173379243 0.150662 147 5 18057 YLR333C intron no 523 421 442 28.399761 298.969265 163.684513 2.214007591 -0.12615 147 6 14837 MT_Asp 5_flank/tRNAAsp no 275 76 102 30.107222 336.535355 183.3212885 2.263212901 -0.285415 147 7 8498 snR19 / U1 RNA 5_flank/U1 no 868 35.832387 287.030814 161.4316005 2.207988553 0.17989 147 8 16148 YDR092W intron no 368 241 257 46.505922 328.826743 187.6663325 2.273386367 -0.132794 147 9 21479 copy of SH1652 no 315 29.180735 294.258108 161.7194215 2.208762179 -0.062849 147 10 951 Gly1 GlyCCC_i tRNA yes 272 6 22 64.565467 314.714295 189.639881 2.277929674 0.081075 147 11 5748 snR35 5_flank no 740 34.621313 324.910367 179.76584 2.254707168 -0.142495 147 12 16440 YER074W intron no 566 361 377 38.323485 299.48515 168.9043175 2.227640751 0.094455 147 13 16612 YFL034C 3_exon no 214 181 201 40.096376 338.529176 189.312776 2.277179924 -0.240288 147 14 14814 MT_Lys; Arg1; Gly tRNAArg1 yes 682 391 410 29.355239 300.326885 164.841062 2.217065404 -0.08622 147 15 2773 Pro6 ProTGG_v 5_flank no 302 32.211565 281.540627 156.876096 2.195556773 0.129671 147 16 16549 YER133W intron no 625 141 158 31.280975 284.707162 157.9940685 2.198640783 0.078466 147 17 14233 MT_ATP9 3_flank no 431 391 413 28.483409 299.0977 163.7905545 2.214288853 -0.122152 147 18 9090 snR14 / U4 RNA U4 yes 360 66 87 42.280264 303.797615 173.0389395 2.238143845 0.064188 147 19 16931 YGR001C 3_exon no 162 141 159 30.793459 313.968796 172.3811275 2.236489717 -0.118062 147 20 2985 Ser1 SerAGA_i 3_flank no 283 29.073549 301.755816 165.4146825 2.218574056 -0.105028 147 21 3305 Thr2 ThrCGT 3_flank no 272 31.323893 284.60697 157.9654315 2.198562058 0.080546 147 22 6016 snR37 5_flank/snR37 no 586 41.684788 308.038093 174.8614405 2.242694052 0.024145 147 23 4510 U3b (snR17b) U3b yes 662 106 122 45.101907 307.154594 176.1282505 2.245829021 0.043245 147 24 16809 YGL137W 3_exon no 300 261 277 32.119745 301.562375 166.84106 2.22230294 0.000201 147 25 8383 snoRNA cluster 5 5_flank no 586 81 100 38.508564 348.816876 193.66272 2.287046027 -0.328158 147 26 11474 "rRNA(18S,5.8S,25S)" 25S yes 7956 4256 4273 479.087877 1212.329932 845.7089045 2.927220903 -0.752968 147 27 4572 U3b (snR17b) U3b yes 662 416 431 85.835468 398.201835 242.0186515 2.383848837 -0.3362 147 28 7172 snR64 5_flank no 301 55.896901 309.877302 182.8871015 2.262183077 0.07237 147 29 12767 MT_COX1 ai1 no 13084 706 725 30.855724 298.069432 164.462578 2.216067094 -0.020272 147 30 18852 YNR053C 5_exon no 631 21 37 31.002266 297.054248 164.028257 2.21491867 -0.009043 147 31 18974 YOR096W intron no 501 161 177 43.857143 316.658087 180.257615 2.255893621 -0.044323 147 32 6908 snR58 5_flank no 296 33.331024 293.471667 163.4013455 2.213255628 0.088928 147 33 3080 Ser3 SerCGA 3_flank no 301 33.337341 317.964799 175.65107 2.2446508 -0.102938 147 34 11913 "rRNA(18S,5.8S,25S)" 25S yes 7956 6451 6470 351.638229 982.664231 667.15123 2.824224291 -0.763813 147 35 3288 Thr2 ThrCGT tRNA yes 272 41 53 1370.978632 5702.698883 3536.838758 3.548615261 -1.898736 147 36 13930 MT_COB bi3 no 7308 3136 3157 30.806844 297.767051 164.2869475 2.21560306 -0.020059 147 37 20997 YML085C spliced yes 40 5 24 34.780963 315.878741 175.329852 2.243855866 -0.069118 147 38 18996 YOR122C intron no 309 101 117 30.461268 289.738289 160.0997785 2.204390731 0.018487 147 39 11979 "rRNA(18S,5.8S,25S)" 25S yes 7956 6781 6798 63.452442 325.31132 194.381881 2.28865578 -0.008868 147 40 2393 Phe4 PheGAA_iv tRNA yes 291 16 28 54.86438 288.58514 171.72476 2.234832918 0.2524 147 41 17206 YHR039C intron no 262 61 78 32.019221 294.254905 163.137063 2.212552639 0.042093 147 42 18155 YLR426W exon/intron no 171 41 60 30.727427 324.48817 177.6077985 2.249462031 -0.186882 147 43 2209 Phe1 PheGAA_i 5_flank no 292 43.373169 299.599649 171.486409 2.234229706 0.10599 147 44 2314 Phe2 PheGAA_ii 3_flank no 292 29.01303 302.367073 165.6900515 2.219296433 -0.11093 147 45 9912 RUF5-1 RUF5-1 yes 975 366 385 32.55986 290.067543 161.3137015 2.207671257 0.085966 147 46 1176 His1 HisGTG 3_flank no 272 46.794664 320.678745 183.7367045 2.264195923 -0.065039 147 47 9322 RUF1 RUF1 yes 750 186 206 30.213135 298.238122 164.2256285 2.215440933 -0.04329 147 48 11687 "rRNA(18S,5.8S,25S)" 25S yes 7956 5321 5341 21397.55207 25718.03929 23557.79568 4.372134651 -1.041313 147 49 2486 Pro1 ProAGG 5_flank no 272 47.890891 311.203183 179.547037 2.254178243 0.019826 147 50 19644 SIR1 2.2 SIR1 2.2 yes 401 1 17 38.513312 300.696648 169.60498 2.2294386 0.083626 147 51 19516 ACT1 ACT1 yes 401 221 240 31.018774 299.032124 165.025449 2.217550923 -0.020706 147 52 13170 MT_COX1 intronic no 13084 6751 6772 29.356852 324.275825 176.8163385 2.247522393 -0.227422 147 53 9746 RUF4 RUF4 yes 988 506 520 43.758914 302.670195 173.2145545 2.238584381 0.079282 147 54 19304 YPL198W intron no 509 141 157 40.051753 299.657149 169.854451 2.230076932 0.096879 147 55 16253 YDR397C intron no 192 101 117 32.138391 297.949521 165.043956 2.217599625 0.022999 147 56 17568 YJL189W intron no 486 361 378 28.196696 290.783146 159.489921 2.202733243 -0.10033 147 57 10121 RUF6 RUF6 yes 1251 451 467 36.517199 330.724705 183.620952 2.263922235 -0.187186 147 58 17195 YHR021C intron no 650 481 497 53.135569 304.495777 178.815673 2.252405582 0.102867 147 59 11470 "rRNA(18S,5.8S,25S)" 25S yes 7956 4236 4249 198.761535 515.328866 357.0452005 2.5527232 -0.204555 147 60 218 Arg3 ArgCCG 5_flank no 272 32.351981 298.194641 165.273311 2.218202728 0.028401 147 61 8743 LSR1 / U2 RNA U2 yes 1375 356 372 34.35886 305.65382 170.00634 2.230465118 0.007146 147 62 7418 snR69 5_flank/snR69 no 301 34.332211 299.063363 166.697787 2.221929834 0.060694 147 63 8096 snoRNA cluster 2 3_flank no 739 716 731 57.049173 321.835424 189.4422985 2.277476954 -0.019591 147 64 21085 YMR292W spliced yes 40 17 33 34.376065 299.332767 166.854416 2.222337705 0.058998 147 65 12078 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7276 7296 36.487095 322.334864 179.4109795 2.253849017 -0.115466 147 66 2996 Ser2 SerAGA_ii 5_flank no 282 30.356058 271.43803 150.897044 2.178680732 0.105998 147 67 13635 MT_ATP6 ATP6 yes 980 331 353 30.394244 314.072135 172.2331895 2.236116844 -0.132294 147 68 21323 YPR028W spliced yes 40 9 26 34.562134 283.090051 158.8260925 2.200921851 0.193114 147 69 20944 YLR426W spliced yes 40 17 31 49.165315 309.449538 179.3074265 2.253598277 0.041194 147 70 17528 YJL136C 3_exon no 560 521 538 32.641475 325.422136 179.0318055 2.252930191 -0.168964 147 71 6574 snR47 5_flank no 299 28.622536 298.514084 163.56831 2.213699167 -0.111981 147 72 5831 snR35 snR35 yes 740 341 355 134.215553 410.396588 272.3060705 2.435057323 -0.08524 147 73 6594 snR47 snR47 yes 299 76 92 35.379608 277.143712 156.26166 2.193852434 0.25661 147 74 17546 YJL177W intron no 417 321 343 29.297454 310.576217 169.9368355 2.230287527 -0.150063 147 75 10723 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 501 521 31.727294 290.939518 161.333406 2.207724303 0.053391 147 76 9462 RUF2 RUF2 yes 468 151 167 51.68524 325.380536 188.532888 2.27538712 -0.077251 147 77 13790 MT_COB intronic no 7308 1036 1057 32.300088 299.673997 165.9870425 2.220074187 0.017614 147 78 3548 Tyr2 TyrGTA_ii tRNA yes 289 11 25 39.183987 303.530951 171.357469 2.233903039 0.05899 147 79 6484 snR46 5_flank no 397 32.726902 290.645243 161.6860725 2.208672612 0.087646 147 80 361 Arg5 ArgTCT 3_flank no 272 33.938947 257.238822 145.5888845 2.163128218 0.350424 147 81 10714 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 456 469 74.470491 287.963109 181.2168 2.258198457 0.358481 147 82 20893 YLR287C-A spliced yes 40 9 26 32.67521 314.947022 173.811116 2.240077548 -0.087677 147 83 4024 SRP SRP yes 875 11 23 77.949047 301.864646 189.9068465 2.278540622 0.261349 147 84 18387 YMR116C intron no 373 241 258 34.290274 294.635203 164.4627385 2.216067518 0.097054 147 85 18652 YNL112W intron no 1102 221 245 37.163124 271.689951 154.4265375 2.188721934 0.330734 147 86 18823 YNL302C intron no 651 281 297 31.460342 301.363045 166.4116935 2.22118384 -0.020242 147 87 7804 snoRNA cluster1 snR75/intergenic no 1574 816 833 34.399224 301.171744 167.785484 2.224754385 0.04414 147 88 20958 YML025C spliced yes 40 1 22 33.177856 324.348544 178.7632 2.25227812 -0.154048 147 89 8395 snoRNA cluster 5 snR190 yes 586 141 155 80.771839 308.677685 194.724762 2.289421182 0.225021 147 90 10323 RUF7 RUF7 yes 700 226 243 28.874934 282.077652 155.476293 2.191664177 -0.022923 147 91 7157 snR63 3_flank no 455 28.873257 304.025615 166.449436 2.221282328 -0.126044 147 92 16447 YER074W intron/exon no 566 501 520 30.97665 313.420942 172.198796 2.236030111 -0.108653 147 93 10043 RUF6 RUF6 yes 1251 61 77 33.09704 292.291942 162.694491 2.211372848 0.088988 147 94 6242 snR42 5_flank/snR42 no 551 36.320952 285.999049 161.1600005 2.20725726 0.194397 147 95 12252 5S rRNA NTS2 no 1420 216 228 113.488746 315.145831 214.3172885 2.331057206 0.367948 147 96 9940 RUF5-1 RUF5-1 yes 975 506 523 31.359793 282.80943 157.0846115 2.196133642 0.093408 147 97 8162 snoRNA cluster 3; snR70 yes 743 321 333 85.511747 315.337916 200.4248315 2.301951527 0.202121 147 98 789 Glu1 GluCTC 5_flank no 272 29.721109 287.112787 158.416948 2.199801642 -0.001605 147 99 380 Asn1 AsnGTT 5_flank no 274 34.321859 325.52717 179.9245145 2.255090339 -0.148976 147 100 14331 MT_VAR1 VAR1 yes 1467 1171 1192 31.256221 322.664002 176.9601115 2.247875383 -0.165884 147 101 13919 MT_COB bi3 no 7308 2971 2993 30.3066 317.201274 173.753937 2.239934654 -0.153562 147 102 1522 Leu3 LeuCAA_iii tRNA yes 314 e1 56 11972.48814 3681.147456 7826.817796 3.893585224 1.484963 147 103 14270 MT_VAR1 VAR1 yes 1467 256 280 32.700346 303.316456 168.008401 2.225330998 0.005632 147 104 19952 YBL050W spliced yes 40 17 33 1233.010221 730.195536 981.6028785 2.991935823 1.245865 148 2 7119 snR63 snR63 yes 455 101 120 31.524492 381.376174 206.450333 2.314815588 -0.598766 148 3 1953 Lys2 LysCTT_ii 5_flank no 273 30.171617 320.840438 175.5060275 2.244292036 -0.179227 148 4 6388 snR43 snR43 yes 409 181 197 33.024968 295.831499 164.4282335 2.215976391 0.06455 148 5 20014 YBR084C-A spliced yes 40 13 31 32.652564 287.752447 160.2025055 2.204669304 0.103689 148 6 13694 MT_ORF 5 3_flank no 331 256 275 34.335849 293.23675 163.7862995 2.214277571 0.109362 148 7 19362 YPR028W exon/intron no 233 41 58 29.892424 324.978006 177.435215 2.249039817 -0.212526 148 8 4528 U3b (snR17b) U3b yes 662 196 212 31.594779 287.664212 159.6294955 2.203113141 0.069865 148 9 18866 YNR053C intron no 631 301 317 29.308575 276.18974 152.7491575 2.183978824 0.028327 148 10 14768 MT_ORF11; Leu; Gln orf11/tRNALeu no 716 406 427 27.084795 296.464989 161.774892 2.208911119 -0.188611 148 11 14522 MT_21S 21S_rRNA3 yes 4639 2041 2056 40.577956 289.739884 165.15892 2.217902034 0.192106 148 12 16593 YFL034C intron no 421 221 237 30.538055 282.068047 156.303051 2.193967455 0.064133 148 13 20178 YDL189W spliced yes 40 13 29 32.264661 282.235344 157.2500025 2.196590661 0.126853 148 14 6202 snR40 snR40 yes 297 71 88 49.460194 316.098697 182.7794455 2.261927355 -0.013458 148 15 20653 YIL004C spliced yes 40 25 37 7486.737133 13555.98418 10521.36066 4.022071908 -1.259872 148 16 15513 YBR048W intron no 611 221 238 28.201787 297.481824 162.8418055 2.211765909 -0.130378 148 17 7855 snoRNA cluster1 intergenic no 1574 1071 1087 34.060653 272.498379 153.279516 2.18548412 0.24806 148 18 21264 YPL081W spliced yes 40 1 18 50.781645 305.552004 178.1668245 2.25082684 0.082597 148 19 18580 YNL044W intron/exon no 179 121 139 28.687006 271.824647 150.2558265 2.176831322 0.016234 148 20 21354 YPR187W spliced yes 40 5 19 210.13174 438.255219 324.1934795 2.510804276 0.165898 148 21 7776 snoRNA cluster1 intergenic no 1574 676 693 33.200757 346.78508 189.9929185 2.278737414 -0.328372 148 22 6771 snR50 snR50 yes 290 31 48 31.50934 294.59261 163.050975 2.2123234 0.023219 148 23 1162 His1 HisGTG tRNA yes 272 30 42 50.054882 314.05442 182.054651 2.260201778 0.006605 148 24 11559 "rRNA(18S,5.8S,25S)" 25S yes 7956 4681 4697 32557.13989 26803.29973 29680.21981 4.472467113 -0.595637 148 25 18428 YMR142C intron no 502 61 77 32.198208 278.628059 155.4131335 2.191487717 0.148384 148 26 18261 YML056C intron no 508 101 117 34.411263 290.094151 162.252707 2.210191951 0.136898 148 27 5650 snR34 snR34 yes 750 171 191 36.627946 310.848744 173.738345 2.23989568 -0.013733 148 28 11515 "rRNA(18S,5.8S,25S)" 25S yes 7956 4461 4477 45.131741 298.247134 171.6894375 2.234743578 0.124061 148 29 20110 YDL064W spliced yes 40 13 32 91.29976 403.323057 247.3114085 2.393244151 -0.325102 148 30 32 Ala1 AlaAGC tRNA yes 273 56 68 32.944553 274.792345 153.868449 2.187149576 0.197835 148 31 17985 YLR275W intron no 190 61 80 33.094241 302.817902 167.9560715 2.225195708 0.014655 148 32 20607 YHR077C spliced yes 40 17 29 184.852876 523.714307 354.2835915 2.549351039 -0.302557 148 33 18641 YNL112W 5_exon no 1102 1 13 35.323125 299.361506 167.3423155 2.223605774 0.070013 148 34 580 Gln1 GlnCTG 5_flank no 272 31.017822 302.578667 166.7982445 2.222191476 -0.042446 148 35 17664 YKL006C 5_exon no 241 21 38 30.857722 300.538119 165.6979205 2.219317058 -0.035391 148 36 16431 YER074W intron no 566 181 197 43.167952 309.475443 176.3216975 2.246305758 0.016355 148 37 2164 Met2 MetCAT_ii 5_flank no 272 28.378702 294.103001 161.2408515 2.207475083 -0.10545 148 38 9497 RUF2 3_flank no 468 122.405852 408.181426 265.293639 2.423726837 -0.144889 148 39 15998 YDL137W exon/intron no 432 41 58 41.404271 316.271587 178.837929 2.252459632 -0.04917 148 40 13216 MT_COX1 ai4 no 13084 7441 7467 30.017113 325.045693 177.531403 2.249275185 -0.208563 148 41 93 Ala2 AlaTGC 3_flank no 273 33.933311 307.370716 170.6520135 2.232111417 -0.011857 148 42 2516 Pro1 ProAGG tRNA/3_flank no 272 31.693345 284.850433 158.271889 2.199403786 0.091216 148 43 17960 YLR185W intron no 459 181 197 35.405997 291.568271 163.487134 2.213483581 0.136172 148 44 3805 RNaseP 5_flank/RNaseP no 569 56.897553 305.41389 181.1557215 2.258052055 0.115193 148 45 10511 RUF8 RUF8 yes 1151 481 502 28.804808 314.531526 171.668167 2.23468977 -0.191071 148 46 1657 Leu5 LeuCAA_v 3_flank no 315 34.39172 272.777867 153.5847935 2.186348218 0.256273 148 47 4444 telomerase RNA telomerase yes 1501 1256 1270 71.271407 329.857514 200.5644605 2.30225398 0.005099 148 48 9296 RUF1 RUF1 yes 750 56 73 32.35227 283.484961 157.9186155 2.198433328 0.121551 148 49 16586 YFL034C intron no 421 81 100 38.389589 331.578726 184.9841575 2.267134536 -0.18958 148 50 16737 YGL076C intron no 559 161 177 48.626772 317.829691 183.2282315 2.26299239 -0.032048 148 51 8380 snoRNA cluster 5 5_flank no 586 66 85 29.253536 306.769956 168.011746 2.225339645 -0.128926 148 52 17738 YKL156W intron no 450 341 358 78.154835 412.288823 245.221829 2.389559127 -0.471611 148 53 4280 telomerase RNA telomerase yes 1501 436 455 29.895046 297.322785 163.6089155 2.213806966 -0.048683 148 54 8791 LSR1 / U2 RNA U2 yes 1375 596 612 30.143565 293.953141 162.048353 2.209644621 -0.019052 148 55 11160 "rRNA(18S,5.8S,25S)" 18S/ITS1 no 7956 2686 2710 28.268729 308.010794 168.1397615 2.225670427 -0.17301 148 56 11205 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2911 2929 32.496929 303.988477 168.242703 2.225936237 -0.002421 148 57 15554 YBR082C 5_exon no 195 21 40 28.402393 308.8212 168.6117965 2.226887956 -0.172029 148 58 9383 RUF1 RUF1 yes 750 491 508 53.274187 339.339625 196.306906 2.292935578 -0.177004 148 59 12674 MT_Trp 5_flank no 274 31 57 30.362187 305.356235 167.859211 2.224945177 -0.081579 148 60 2880 Pro8 ProTGG_vii 5_flank no 305 32.316023 275.139061 153.727542 2.186751683 0.175399 148 61 20572 YHR012W spliced yes 40 1 18 32.214151 303.716421 167.965286 2.225219534 -0.009839 148 62 21239 YOR312C spliced yes 40 1 18 237.447199 482.27692 359.8620595 2.556136061 0.090864 148 63 13998 MT_COB intronic no 7308 4156 4178 28.036627 320.778046 174.4073365 2.24156475 -0.255504 148 64 19791 Negative Control no 60 NA #VALUE! 46.478039 286.96942 166.7237295 2.221997417 0.23398 148 65 10377 RUF7 RUF7/3_flank no 700 42.431648 291.62654 167.029094 2.222792125 0.17805 148 66 11228 "rRNA(18S,5.8S,25S)" ITS1 no 7956 3026 3046 30.196385 324.393593 177.294989 2.248696461 -0.198648 148 67 21733 copy of SH12133 no 7956 46.742811 306.459755 176.601283 2.246993854 0.054547 148 68 6013 snR37 5_flank no 586 32.39832 309.791286 171.094803 2.233236818 -0.05041 148 69 8497 snR19 / U1 RNA 5_flank no 868 37.668068 289.12389 163.395979 2.213241365 0.182621 148 70 20235 YDR305C spliced yes 40 1 20 29.519344 306.28596 167.902652 2.225057556 -0.116573 148 71 11002 "rRNA(18S,5.8S,25S)" 18S yes 7956 1896 1912 11614.87236 15698.54005 13656.70621 4.135345967 -0.968141 148 72 10159 RUF6 RUF6 yes 1251 641 660 39.355465 333.682798 186.5191315 2.270723385 -0.203392 148 73 7888 snoRNA cluster1 intergenic no 1574 1236 1258 29.083484 299.531011 164.3072475 2.21565672 -0.091686 148 74 4791 snR5 snR5 yes 404 126 144 31.493284 305.798668 168.645976 2.226975983 -0.046051 148 75 14755 MT_ORF11; Leu; Gln ORF11 yes 716 211 235 31.805523 299.164162 165.4848425 2.218758221 0.004636 148 76 180 Arg2 ArgACG_ii tRNA yes 273 16 28 78.306838 309.581625 193.9442315 2.287676867 0.202926 148 77 9075 snR14 / U4 RNA 5_flank/U4 no 360 39.052586 308.297927 173.6752565 2.239737949 0.015143 148 78 9680 RUF4 RUF4 yes 988 176 197 30.491425 301.763752 166.1275885 2.220441761 -0.055354 148 79 17137 YHR010W intron no 661 461 478 32.927183 293.438924 163.1830535 2.212675055 0.076404 148 80 17308 YHR203C intron no 369 141 157 35.287954 310.009454 172.648704 2.237163323 -0.016774 148 81 6513 snR46 snR46 yes 397 56 72 37.517178 324.807228 181.162203 2.258067593 -0.134274 148 82 15152 MT_Thr1 3_flank no 272 211 239 30.642344 315.380497 173.0114205 2.238074772 -0.131459 148 83 2758 Pro5 ProTGG_iv 3_flank no 303 30.3743 299.777614 165.075957 2.217683824 -0.047214 148 84 14484 MT_21S 21S_rRNA3 yes 4639 1471 1497 27.845345 329.601748 178.7235465 2.252181774 -0.312614 148 85 1645 Leu5 LeuCAA_v tRNA yes 315 49 66 29.653759 289.361836 159.5077975 2.202781918 -0.01552 148 86 8501 snR19 / U1 RNA U1 yes 868 1 18 46.427568 314.421868 180.424718 2.256296035 -0.014958 148 87 3708 Val3 ValCAC tRNA yes 273 21 36 54.552693 308.295525 181.424109 2.258694999 0.078394 148 88 14807 MT_Lys; Arg1; Gly intergenic no 682 286 314 31.022266 312.909508 171.965887 2.235442304 -0.104109 148 89 15506 YBR048W intron no 611 81 100 30.963921 306.43142 168.6976705 2.227109086 -0.067558 148 90 13384 MT_COX1 exon5b yes 13084 9961 9977 35.178668 294.029894 164.604281 2.216441126 0.112727 148 91 2044 Lys3 LysTTT_i 3_flank no 296 28.911591 320.762972 174.8372815 2.242634045 -0.223328 148 92 8331 snoRNA cluster4 intergenic/snR53 no 638 441 462 31.058712 299.622772 165.340742 2.218379882 -0.022995 148 93 10576 RUF8 RUF8 yes 1151 806 822 45.9304 310.625742 178.278071 2.251097926 0.015013 148 94 12547 MT_ORF6 + ORF7 (hypothetical) 3_flank no 664 601 627 31.185302 342.706947 186.9461245 2.271716466 -0.315757 148 95 18486 YMR194W intron no 563 81 97 33.438356 312.094915 172.7666355 2.237459876 -0.055636 148 96 19381 YPR043W intron no 503 201 217 35.783787 310.056298 172.9200425 2.237845334 -0.01137 148 97 9481 RUF2 RUF2 yes 468 246 262 42.545503 321.122592 181.8340475 2.259675206 -0.08705 148 98 8047 snoRNA cluster 2 intergenic no 739 471 492 28.76656 318.85731 173.811935 2.240079594 -0.217608 148 99 13933 MT_COB bi3 no 7308 3181 3205 30.092369 317.249889 173.671129 2.239727628 -0.161252 148 100 1129 Gly4 GlyTCC 3_flank no 272 32.506779 311.842923 172.174851 2.235969716 -0.065339 148 101 4868 snR8 snR8 yes 390 121 133 39.366666 268.910493 154.1385795 2.187911352 0.379998 148 102 5788 snR35 snR35 yes 740 126 145 32.828509 310.4117 171.6201045 2.234568162 -0.049892 148 103 4153 SRP SRP yes 875 656 673 30.685751 302.293237 166.489494 2.221386833 -0.051948 148 104 15089 MT_COX 2; ORF1 ORF1exon1 yes 2427 1936 1960 30.749121 311.764423 171.256772 2.233647754 -0.106594 149 2 18726 YNL147W intron no 220 61 78 33.624872 422.903714 228.264293 2.358437981 -0.875761 149 3 7233 snR65 5_flank no 300 31.197658 305.715959 168.4568085 2.226488569 -0.055401 149 4 13347 MT_COX1 ai5a no 13084 9406 9428 28.793693 315.91395 172.3538215 2.236420917 -0.199549 149 5 411 Asn1 AsnGTT 3_flank no 274 54.646154 276.414279 165.5302165 2.218877283 0.365168 149 6 18562 YMR292W intron/exon no 182 121 139 32.312912 284.139349 158.2261305 2.199278207 0.116034 149 7 8399 snoRNA cluster 5 snR190 yes 586 161 180 31.983127 267.873923 149.928525 2.175884268 0.204725 149 8 12706 MT_ORF 8 ORF8 yes 491 256 278 30.669304 319.519108 175.094206 2.243271775 -0.154544 149 9 3623 Val1 ValAAC_i 3_flank no 274 31.388408 328.599401 179.9939045 2.255257798 -0.209184 149 10 15767 YCR097W 5_exon no 154 21 42 29.13024 300.066234 164.598237 2.216425179 -0.092656 149 11 18115 YLR367W intron/exon no 583 521 538 32.784923 305.641551 169.213237 2.228434333 -0.01217 149 12 351 Arg5 ArgTCT 3_flank no 272 86.116003 377.820042 231.9680225 2.36542812 -0.213928 149 13 1424 Leu1 LeuCAA_i 3_flank no 315 34.137127 311.7515 172.9443135 2.237906287 -0.044351 149 14 2904 Pro8 ProTGG_vii tRNA yes 305 i5 i19 39.66158 331.651589 185.6565845 2.268710357 -0.18554 149 15 1150 His1 HisGTG 5_flank no 272 33.768797 268.452932 151.1108645 2.17929569 0.266612 149 16 15797 YDL061C intron no 509 81 95 56.750887 307.315069 182.032978 2.260150074 0.098363 149 17 21343 YPR098C spliced yes 40 17 33 43.440993 301.589008 172.5150005 2.236826864 0.088059 149 18 11994 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6856 6869 89.941545 369.73906 229.8403025 2.361426185 -0.138543 149 19 8154 snoRNA cluster 3; intergenic/snR70 no 743 281 303 32.406559 289.57986 160.9932095 2.206807558 0.084136 149 20 6636 snR48 snR48 yes 313 6 25 40.570425 297.762203 169.166314 2.228313886 0.115778 149 21 7444 snR69 3_flank no 301 29.101556 279.302079 154.2018175 2.188089493 0.002391 149 22 8058 snoRNA cluster 2 intergenic no 739 526 543 37.377437 324.075187 180.726312 2.257021386 -0.12831 149 23 18779 YNL265C intron no 205 121 138 29.639487 290.331574 159.9855305 2.204080706 -0.020723 149 24 15640 YBR186W intron no 213 141 160 33.910217 304.907426 169.4088215 2.228936021 0.007746 149 25 13267 MT_COX1 cox1ai4/intronic no 13084 8206 8232 30.023207 323.424653 176.72393 2.247295361 -0.199146 149 26 836 Glu2 GluTTC_i 5_flank no 272 30.162394 272.208085 151.1852395 2.179509392 0.092282 149 27 14646 MT_21S intronic no 4639 3901 3922 29.261075 301.074559 165.167817 2.217925429 -0.094153 149 28 14883 MT_Ala tRNA yes 276 151 168 30.42348 299.802325 165.1129025 2.217781012 -0.045677 149 29 238 Arg3 ArgCCG tRNA yes 272 46 58 70.385799 341.699971 206.042885 2.313957622 -0.085754 149 30 20286 YDR471W spliced yes 40 13 29 39.102039 288.913352 164.0076955 2.214864226 0.196705 149 31 5162 snR13 5_flank no 324 35.075325 305.012062 170.0436935 2.23056053 0.020886 149 32 20093 YDL012C spliced yes 40 25 37 41.515122 287.707817 164.6114695 2.216460092 0.213856 149 33 5503 snR32 snR32/3_flank no 388 30.984459 304.256236 167.6203475 2.224326737 -0.053749 149 34 5711 snR34 snR34 yes 750 476 493 28.803905 272.136845 150.470375 2.177451003 0.021025 149 35 16230 YDR381W intron no 866 501 517 30.727186 312.210442 171.468814 2.234185144 -0.109971 149 36 16722 YGL033W 5_exon no 170 21 36 40.879095 296.143516 168.5113055 2.226629043 0.131701 149 37 8063 snoRNA cluster 2 snR61 yes 739 551 572 30.280541 305.712449 167.996495 2.225300221 -0.086537 149 38 5466 snR32 5_flank/snR32 no 388 48.557202 302.554194 175.555698 2.24441493 0.097624 149 39 7734 snoRNA cluster1 intergenic no 1574 466 483 43.242675 320.013333 181.628004 2.25918281 -0.075244 149 40 2134 Met1 MetCAT_i tRNA yes 273 56 68 42.11141 273.823485 157.9674475 2.198567601 0.353359 149 41 19211 YPL081W intron no 601 381 397 31.857132 300.15547 166.006301 2.220124573 0.000238 149 42 19288 YPL175W 5_exon no 200 21 40 29.718931 303.022396 166.3706635 2.221076749 -0.089813 149 43 15429 YBL072C intron no 408 141 160 51.682364 328.54338 190.112872 2.279011523 -0.102309 149 44 12111 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7441 7454 1541.702516 4121.281464 2831.49199 3.452015337 -1.222884 149 45 18659 YNL112W intron no 1102 361 378 58.817248 337.37585 198.096549 2.29687691 -0.128016 149 46 5627 snR34 snR34 yes 750 56 73 33.762801 293.068878 163.4158395 2.213294149 0.103808 149 47 8099 snoRNA cluster 3; 5_flank no 743 6 22 44.408646 312.132441 178.2705435 2.251079589 -0.003058 149 48 17070 YGR214W 3_exon no 555 541 555 37.56729 297.627947 167.5976185 2.224267843 0.109871 149 49 20678 YIL106W spliced yes 40 21 36 48.618882 306.854467 177.7366745 2.24977705 0.06068 149 50 14599 MT_21S Sce1 no 4639 3196 3218 27.201444 290.050333 158.6258885 2.200374068 -0.152804 149 51 7153 snR63 3_flank no 455 37.525073 289.995649 163.760361 2.214208787 0.173606 149 52 18238 YML026C intron no 501 361 380 27.821283 310.422286 169.1217845 2.228199552 -0.208185 149 53 15296 MT_9S 3_flank no 701 616 644 28.104646 316.649194 172.37692 2.236479117 -0.229121 149 54 346 Arg5 ArgTCT tRNA/3_flank no 272 34.512624 294.456815 164.4847195 2.216125559 0.101227 149 55 7149 snR63 snR63/3_flank no 455 32.617707 303.065141 167.841424 2.224899156 0.006633 149 56 691 Gln3 GlnTTG_ii 5_flank/tRNA no 272 34.781681 297.366533 166.074107 2.220301926 0.080142 149 57 15989 YDL136W intron no 505 361 378 30.624685 291.185606 160.9051455 2.206569932 0.014899 149 58 21917 copy of SH20000 no 40 47.219194 292.437832 169.828513 2.230010607 0.184456 149 59 6154 snR39B 3_flank no 296 30.450534 252.260128 141.355331 2.150312192 0.207821 149 60 11711 "rRNA(18S,5.8S,25S)" 25S yes 7956 5441 5454 2138.826975 3064.296227 2601.561601 3.415234114 -0.328419 149 61 21090 YNL012W spliced yes 40 9 21 73.557728 319.188094 196.372911 2.293081578 0.099424 149 62 12720 MT_COX1 5_flank no 13084 1 29 30.071832 309.369001 169.7204165 2.229734089 -0.11565 149 63 18223 YML026C intron no 501 61 75 62.808888 312.028105 187.4184965 2.27281245 0.092904 149 64 11442 "rRNA(18S,5.8S,25S)" 25S yes 7956 4096 4112 22691.14344 15155.75074 18923.44709 4.27700025 -0.090954 149 65 19531 CBP1 1.2 CBP1 1.2 yes 401 121 139 30.035796 285.397308 157.716552 2.197877274 0.02274 149 66 5066 snR11 5_flank no 458 30.102621 308.288039 169.19533 2.228388372 -0.108137 149 67 2395 Phe4 PheGAA_iv tRNA/intron no 291 26 i5 48.690973 313.780536 181.2357545 2.25824388 0.002123 149 68 15388 YBL040C exon/intron no 197 41 59 30.294364 305.563204 167.928784 2.225125143 -0.085161 149 69 4523 U3b (snR17b) U3b yes 662 171 188 30.416408 284.536528 157.476468 2.197215666 0.046328 149 70 9886 RUF5-1 RUF5-1 yes 975 236 248 72.375897 326.15332 199.2646085 2.29943017 0.039515 149 71 104 Ala2 AlaTGC 3_flank no 273 37.01277 298.078511 167.5456405 2.224133132 0.099975 149 72 16187 YDR367W intron no 201 121 138 30.961985 290.518267 160.740126 2.206124304 0.030562 149 73 8031 snoRNA cluster 2 snR55 yes 739 391 407 39.710077 295.341065 167.525571 2.224081107 0.136633 149 74 1783 Leu8 LeuTAG_i 5_flank no 301 31.498901 307.63936 169.5691305 2.229346793 -0.056914 149 75 12012 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6946 6964 31.809599 302.2831 167.0463495 2.222836989 -0.014326 149 76 15907 YDL083C intron no 532 221 240 36.510989 283.66567 160.0883295 2.204359673 0.216803 149 77 8548 snR19 / U1 RNA U1 yes 868 236 250 119.264808 330.404415 224.8346115 2.351863168 0.294851 149 78 113 Arg1 ArgACG_i 5_flank no 273 35.016967 292.706302 163.8616345 2.214477283 0.12197 149 79 1822 Leu8 LeuTAG_i 3_flank no 301 30.79955 307.013867 168.9067085 2.227646899 -0.076612 149 80 12297 5S rRNA NTS2 no 1420 441 457 37.696033 280.140743 158.918388 2.201174151 0.260931 149 81 9022 snR17a / U3a U3a yes 690 396 413 35.437409 322.819292 179.1283505 2.253164327 -0.122328 149 82 1706 Leu6 LeuGAG 3_flank no 282 35.258806 283.312239 159.2855225 2.202176304 0.205435 149 83 18411 YMR125W intron/exon no 422 361 378 32.699518 299.142777 165.9211475 2.219901743 0.033714 149 84 21480 copy of SH1653 no 315 30.0893 318.027532 174.058416 2.240695027 -0.165866 149 85 19955 YBL059C-A spliced yes 40 1 17 31.819576 269.446959 150.6332675 2.177920897 0.188963 149 86 15332 YAL003W 3_exon no 466 441 455 48.501639 308.604002 178.5528205 2.251766715 0.045078 149 87 1487 Leu3 LeuCAA_iii 5_flank no 314 33.196801 290.193653 161.695227 2.2086972 0.105396 149 88 759 Gln4 GlnTTG_iii tRNA/3_flank no 272 30.901204 278.325293 154.6132485 2.189246705 0.100288 149 89 5850 snR35 snR35 yes 740 436 453 64.515944 338.953356 201.73465 2.304780499 -0.103733 149 90 7413 snR69 5_flank no 301 30.858871 279.254611 155.056741 2.190490652 0.093719 149 91 5465 snR32 5_flank/snR32 no 388 35.123916 320.5205 177.822208 2.249985999 -0.103171 149 92 895 Glu3 GluTTC_ii 5_flank/tRNA no 272 28.90331 296.26248 162.582895 2.211074852 -0.086731 149 93 5484 snR32 snR32 yes 388 81 98 31.086163 284.400615 157.743389 2.197951167 0.073926 149 94 18170 YLR448W intron no 484 181 200 40.724521 285.652088 163.1883045 2.21268903 0.232137 149 95 14836 MT_Asp 5_flank no 275 61 80 31.329494 314.79087 173.060182 2.238197156 -0.104856 149 96 8614 snR19 / U1 RNA U1 yes 868 566 582 31.529548 284.833758 158.181653 2.19915611 0.085913 149 97 13886 MT_COB intronic no 7308 2476 2500 31.780462 314.649768 173.215115 2.238585786 -0.09684 149 98 17173 YHR021C exon/intron no 650 41 58 32.058027 305.740692 168.8993595 2.227628003 -0.027142 149 99 21890 copy of SH18800 no 532 33.429169 299.624618 166.5268935 2.221484381 0.045024 149 100 19325 YPL218W intron no 239 61 77 37.008082 287.652835 162.3304585 2.210400015 0.187908 149 101 17810 YKR057W intron no 422 61 83 30.564203 310.20661 170.3854065 2.231432395 -0.10367 149 102 20412 YFR032C-A spliced yes 40 17 34 37.460775 309.030111 173.245443 2.23866182 0.004715 149 103 4632 snR3 snR3 yes 395 76 93 33.107031 328.35186 180.7294455 2.257028916 -0.185249 149 104 10233 RUF6 RUF6 yes 1251 1011 1031 33.223175 292.708137 162.965656 2.212096089 0.09034 150 2 16393 YER044C intron no 188 101 117 33.458572 617.705071 325.5818215 2.512660149 -1.858618 150 3 16068 YDR005C intron no 180 81 102 31.069311 333.96054 182.5149255 2.261298385 -0.253409 150 4 8264 snoRNA cluster4 snR67 yes 638 106 122 35.001368 298.540207 166.7707875 2.22211998 0.073014 150 5 6856 snR56 5_flank no 288 71.391008 350.224584 210.807796 2.323886668 -0.137965 150 6 1916 Lys1 LysCTT_i tRNA yes 272 36 53 9266.904758 5937.518039 7602.211399 3.880939942 0.375878 150 7 12242 5S rRNA NTS2 no 1420 166 187 31.970841 292.780261 162.375551 2.210520638 0.049764 150 8 3806 RNaseP 5_flank/RNaseP no 569 68.261702 351.040224 209.650963 2.321496862 -0.165354 150 9 1666 Leu5 LeuCAA_v 3_flank no 315 29.427809 288.133782 158.7807955 2.200797973 -0.021741 150 10 7537 snR79 snR79 yes 284 26 42 29.17033 302.986751 166.0785405 2.22031352 -0.109053 150 11 843 Glu2 GluTTC_i 5_flank/tRNA no 272 32.81856 314.952315 173.8854375 2.240263212 -0.085906 150 12 2299 Phe2 PheGAA_ii tRNA/3_flank no 292 34.433097 301.469118 167.9511075 2.225182872 0.042109 150 13 16278 YDR447C intron no 414 241 260 43.752329 328.2842 186.0182645 2.269555588 -0.143425 150 14 13379 MT_COX1 intronic/exon5b no 13084 9886 9904 31.901313 289.687273 160.794293 2.20627063 0.067045 150 15 3545 Tyr2 TyrGTA_ii 5_flank/tRNA no 289 41.251156 314.213358 177.732257 2.249766256 -0.031788 150 16 20749 YJR021C spliced yes 40 1 16 64.142002 339.420366 201.781184 2.304880666 -0.109565 150 17 18025 YLR306W intron no 234 161 180 34.621197 285.264866 159.9430315 2.203965323 0.180806 150 18 480 Asp2 AspGTC_ii 5_flank no 272 37.700857 292.798413 165.249635 2.218140509 0.151771 150 19 13808 MT_COB bi2 no 7308 1306 1325 30.296883 296.44087 163.3688765 2.213169322 -0.029271 150 20 15904 YDL083C intron no 532 161 177 32.541173 301.261752 166.9014625 2.222460142 0.015649 150 21 11071 "rRNA(18S,5.8S,25S)" 18S yes 7956 2241 2256 30.909943 297.906082 164.4080125 2.215922979 -0.01743 150 22 2121 Met1 MetCAT_i 5_flank/tRNA no 273 31.216902 293.121537 162.1692195 2.209968427 0.022699 150 23 7385 snR68 3_flank no 336 31.494806 325.797893 178.6463495 2.251994146 -0.186623 150 24 5628 snR34 snR34 yes 750 61 77 33.752284 282.381379 158.0668315 2.198840748 0.172969 150 25 11147 "rRNA(18S,5.8S,25S)" 18S yes 7956 2621 2639 40382.77749 30487.07486 35434.92618 4.549431532 -0.545172 150 26 3466 Trp1 TrpCCA 3_flank no 306 69.173084 355.828032 212.500558 2.327360075 -0.191398 150 27 18876 YNR053C intron no 631 501 520 32.254829 308.555199 170.405014 2.231482369 -0.042367 150 28 5513 snR32 3_flank no 388 34.484196 297.153886 165.819041 2.219634399 0.078353 150 29 11744 "rRNA(18S,5.8S,25S)" 25S yes 7956 5606 5623 16397.48006 27239.55772 21818.51889 4.338825266 -1.462669 150 30 5187 snR13 snR13 yes 324 91 108 32.765435 300.379434 166.5724345 2.221603133 0.028221 150 31 21487 copy of SH1853 no 301 1712.74201 1855.128393 1783.935202 3.251379075 0.183082 150 32 14409 MT_21S 21S_rRNA3 yes 4639 346 365 64.723735 349.767534 207.2456345 2.316485391 -0.179838 150 33 2763 Pro6 ProTGG_v 5_flank no 302 33.003614 292.952797 162.9782055 2.212129532 0.081878 150 34 345 Arg5 ArgTCT tRNA/3_flank no 272 590.873829 843.410034 717.1419315 2.855605117 0.109939 150 35 19934 YBL026W spliced yes 40 13 30 32.699808 303.980767 168.3402875 2.226188065 0.000219 150 36 20697 YIL148W spliced yes 40 21 38 34.51423 308.190349 171.3522895 2.233889912 -0.01141 150 37 11804 "rRNA(18S,5.8S,25S)" 25S yes 7956 5906 5919 23067.85757 14865.27805 18966.56781 4.277988748 -0.038648 150 38 891 Glu3 GluTTC_ii 5_flank no 272 29.989088 309.50839 169.748739 2.229806557 -0.119357 150 39 1707 Leu6 LeuGAG 3_flank no 282 29.898688 304.025983 166.9623355 2.222618511 -0.089604 150 40 1652 Leu5 LeuCAA_v 3_flank no 315 28.862296 298.054317 163.4583065 2.213406995 -0.096967 150 41 5426 snR31 snR31 yes 425 196 212 35.962736 308.79749 172.380113 2.236487161 0.000749 150 42 14112 MT_COB intronic no 7308 5866 5887 29.853263 317.127118 173.4901905 2.239274924 -0.16887 150 43 10681 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 291 306 525.498684 825.956826 675.727755 2.829771758 0.005891 150 44 4269 telomerase RNA telomerase yes 1501 381 399 35.663343 292.340675 164.002009 2.214849168 0.132632 150 45 16908 YGL232W intron no 158 81 100 27.451821 298.916782 163.1843015 2.212678377 -0.178664 150 46 12782 MT_COX1 ai1 no 13084 931 947 39.222598 307.777509 173.5000535 2.239299613 0.02026 150 47 785 Glu1 GluCTC 5_flank no 272 31.141007 302.0349 166.5879535 2.221643593 -0.034995 150 48 2843 Pro7 ProTGG_vi tRNA yes 303 22 37 35.092418 284.192097 159.6422575 2.203147861 0.195813 150 49 17800 YKL190W 5_exon no 176 21 38 35.226244 303.009568 169.117906 2.228189593 0.038942 150 50 18210 YML025C 5_exon no 199 1 18 31.484364 308.212832 169.848598 2.230061966 -0.060825 150 51 20486 YGL232W spliced yes 40 5 22 41.930834 318.142987 180.0369105 2.255361552 -0.063553 150 52 6899 snR56 3_flank no 288 30.088467 297.725271 163.906869 2.214597154 -0.044439 150 53 13341 MT_COX1 ai5a no 13084 9316 9340 28.312294 322.276658 175.294476 2.243768231 -0.253868 150 54 20214 YDR064W spliced yes 40 9 21 34.746324 284.226244 159.486284 2.202723339 0.191289 150 55 9559 RUF3 RUF3 yes 631 181 197 47.482495 306.106079 176.794287 2.247468227 0.061317 150 56 19181 YPL079W intron no 521 301 317 168.778048 358.877905 263.8279765 2.421320847 0.378136 150 57 9435 RUF2 RUF2 yes 468 16 33 32.885646 275.491777 154.1887115 2.188052579 0.191286 150 58 21007 YML094W spliced yes 40 17 38 30.728377 320.741573 175.734975 2.244858204 -0.159566 150 59 2024 Lys3 LysTTT_i tRNA yes 296 43 57 76.722763 313.040021 194.881392 2.289770373 0.166333 150 60 7026 snR62 5_flank no 300 49.146045 334.169903 191.657974 2.282526893 -0.161198 150 61 3666 Val2 ValAAC_ii tRNA/3_flank no 274 32.357222 275.983192 154.170207 2.188000456 0.171089 150 62 19419 YPR132W intron no 465 101 117 48.655948 325.164408 186.910178 2.271632951 -0.092128 150 63 16698 YGL031C intron no 556 101 117 30.063092 291.830568 160.94683 2.206682427 -0.008501 150 64 19168 YPL079W exon/intron no 521 41 57 36.138758 310.841547 173.4901525 2.239274829 -0.014896 150 65 9908 RUF5-1 RUF5-1 yes 975 346 365 42.29156 326.012598 184.152079 2.265176626 -0.129357 150 66 3033 Ser2 SerAGA_ii 3_flank no 282 34.181922 286.678616 160.430269 2.205286312 0.15837 150 67 5898 snR36 5_flank no 555 30.192567 304.688509 167.440538 2.223860611 -0.083398 150 68 309 Arg4 ArgCCT 3_flank no 272 40.616436 306.373702 173.495069 2.239287136 0.036221 150 69 21188 YOL120C spliced yes 40 1 20 30.45193 291.261114 160.856522 2.206438674 0.008515 150 70 8034 snoRNA cluster 2 snR55 yes 739 406 422 57.759276 314.824704 186.29199 2.270194182 0.041093 150 71 11251 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3141 3159 120.32982 390.595375 255.4625975 2.407327324 -0.063078 150 72 12047 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7121 7134 39.396975 292.311169 165.854072 2.219726139 0.164723 150 73 13269 MT_COX1 intronic no 13084 8236 8258 29.070084 318.89843 173.984257 2.240509953 -0.206885 150 74 6065 snR37 snR37 yes 586 241 257 33.569656 303.160421 168.3650385 2.226251914 0.017767 150 75 7883 snoRNA cluster1 snR73 yes 1574 1211 1223 139.85145 371.144244 255.497847 2.407387245 0.158992 150 76 18237 YML026C intron no 501 341 357 49.5358 306.693748 178.114774 2.250699944 0.066651 150 77 17254 YHR097C 3_exon no 224 181 201 32.400341 301.903508 167.1519245 2.223111381 0.007202 150 78 15028 MT_COX 2; ORF1 ORF1exon1 yes 2427 1021 1045 30.52701 327.267545 178.8972775 2.252603731 -0.210669 150 79 19993 YBR048W spliced yes 40 1 17 33.045659 303.809587 168.427623 2.22641332 0.005967 150 80 21459 copy of SH635 no 272 30.980474 306.034231 168.5073525 2.226618855 -0.064612 150 81 15559 YBR082C intron no 195 121 139 33.267168 300.163288 166.715228 2.221975271 0.038573 150 82 3498 Tyr1 TyrGTA_i tRNA/intron no 289 29 i9 37.615179 308.659498 173.1373385 2.238390737 0.008444 150 83 9381 RUF1 RUF1 yes 750 481 495 206.87231 466.564586 336.718448 2.527266911 0.028106 150 84 14470 MT_21S 21S_rRNA3 yes 4639 1261 1283 32.344223 325.004352 178.6742875 2.252062059 -0.169577 150 85 21713 copy of SH11293 no 7956 66.621619 319.239268 192.9304435 2.285400763 0.057508 150 86 196 Arg2 ArgACG_ii 3_flank no 273 35.628925 305.846647 170.737786 2.232329646 0.020617 150 87 20115 YDL075W spliced yes 40 9 26 35.209223 289.579317 162.39427 2.210570701 0.15078 150 88 15987 YDL136W intron no 505 321 342 30.771091 293.331891 162.051491 2.209653031 0.006358 150 89 6688 snR49 5_flank no 365 32.760419 297.77383 165.2671245 2.218186471 0.044102 150 90 7401 snR69 5_flank no 301 36.946043 319.246609 178.096326 2.25065496 -0.087426 150 91 10475 RUF8 RUF8 yes 1151 301 320 39.128115 318.423679 178.775897 2.252308966 -0.074975 150 92 10645 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 111 133 32.955998 323.176798 178.066398 2.250581974 -0.147882 150 93 6530 snR46 snR46 yes 397 141 162 33.063919 319.133461 176.09869 2.245756125 -0.115414 150 94 1679 Leu6 LeuGAG 5_flank no 282 35.299202 311.472979 173.3860905 2.239014254 -0.028282 150 95 2859 Pro7 ProTGG_vi tRNA/3_flank no 303 35.475406 305.484014 170.47971 2.231672698 0.021761 150 96 5889 snR36 5_flank no 555 44.273696 304.368855 174.3212755 2.241350395 0.065596 150 97 12952 MT_COX1 ai2 no 13084 3481 3500 31.708713 302.024042 166.8663775 2.222368838 -0.016064 150 98 12931 MT_COX1 ai2 no 13084 3166 3185 34.175456 316.169262 175.172359 2.243465579 -0.078661 150 99 8540 snR19 / U1 RNA U1 yes 868 196 215 32.30577 311.642488 171.974129 2.235463119 -0.066318 150 100 18191 YML024W intron no 498 121 143 30.378549 340.392092 185.3853205 2.268075342 -0.30986 150 101 2705 Pro5 ProTGG_iv 5_flank no 303 59.780687 296.93146 178.3560735 2.251287903 0.202774 150 102 16606 YFL034C intron no 214 61 80 37.562399 298.835783 168.199091 2.225823644 0.098689 150 103 1015 Gly2 GlyCCC_ii tRNA/3_flank no 272 35.509528 290.209039 162.8592835 2.21181252 0.148928 150 104 21746 copy of SH12761 no 13084 44.905558 309.164315 177.0349365 2.24805898 0.024735 151 2 12035 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7061 7086 37.54227 701.527469 369.5348695 2.567655425 -2.117112 151 3 4654 snR3 snR3/3_flank no 395 35.136286 346.107638 190.621962 2.280172935 -0.317735 151 4 10213 RUF6 RUF6 yes 1251 911 928 28.571399 286.942482 157.7569405 2.197988475 -0.062113 151 5 2216 Phe1 PheGAA_i 5_flank no 292 42.851204 308.053118 175.452161 2.244158722 0.027942 151 6 19279 YPL143W intron no 625 461 477 32.184689 266.793574 149.4891315 2.174609619 0.219868 151 7 5769 snR35 snR35 yes 740 31 45 56.434801 300.293712 178.3642565 2.251307828 0.156535 151 8 13980 MT_COB intronic no 7308 3886 3914 29.653847 328.285449 178.969648 2.252779384 -0.239538 151 9 5986 snR36 3_flank no 555 31.422239 285.427653 158.424946 2.199823568 0.078518 151 10 3138 Ser4 SerGCT 3_flank no 301 35.128609 294.06092 164.5947645 2.216416017 0.111877 151 11 3008 Ser2 SerAGA_ii tRNA yes 282 1 13 132.454263 367.986861 250.220562 2.398322995 0.135701 151 12 9220 snR6 / U6 RNA 5_flank no 312 30.537396 301.755173 166.1462845 2.220490634 -0.053728 151 13 17201 YHR021C 3_exon no 650 601 620 34.055924 283.108883 158.5824035 2.200254996 0.177584 151 14 10580 RUF8 RUF8 yes 1151 826 843 37.553935 327.605724 182.5798295 2.261452797 -0.158155 151 15 2990 Ser2 SerAGA_ii 5_flank no 282 37.312231 301.05284 169.1825355 2.228355529 0.077426 151 16 21788 copy of SH14443 no 4639 29.662601 332.663467 181.163034 2.258069585 -0.263621 151 17 18412 YMR125W 3_exon no 422 381 398 31.607793 288.283649 159.945721 2.203972626 0.066335 151 18 10427 RUF8 RUF8 yes 1151 61 82 27.98087 290.631487 159.3061785 2.20223262 -0.111574 151 19 15207 MT_COX3 cox3 no 1010 526 546 30.120724 301.868938 165.994831 2.220094565 -0.068768 151 20 21735 copy of SH12340 no 1420 51.785878 312.375431 182.0806545 2.260263806 0.029105 151 21 2027 Lys3 LysTTT_i tRNA yes 296 58 70 37.572196 324.973385 181.2727905 2.25833262 -0.135569 151 22 10516 RUF8 RUF8 yes 1151 506 528 27.087453 287.864587 157.47602 2.19721443 -0.149257 151 23 12525 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 271 296 27.337502 289.63621 158.486856 2.19999325 -0.143149 151 24 14960 MT_COX 2; ORF1 5_flank no 2427 1 29 27.5607 301.471117 164.5159085 2.2162079 -0.183845 151 25 20717 YJL136C spliced yes 40 1 18 49.079695 327.172558 188.1261265 2.274449114 -0.106251 151 26 8717 LSR1 / U2 RNA U2 yes 1375 226 243 29.972273 291.83815 160.9052115 2.206570111 -0.011708 151 27 16775 YGL103W intron no 611 181 201 34.259902 267.435399 150.8476505 2.17853855 0.288681 151 28 6448 snR45 snR45 yes 372 86 102 432.110424 750.702588 591.406506 2.771886098 -0.060642 151 29 6573 snR47 5_flank no 299 32.601278 306.969334 169.785306 2.229900102 -0.025209 151 30 11321 "rRNA(18S,5.8S,25S)" 25S yes 7956 3491 3508 41544.45823 23307.73823 32426.09823 4.510894694 -0.0649 151 31 6386 snR43 snR43 yes 409 171 188 35.012755 297.343472 166.1781135 2.220573824 0.083075 151 32 4550 U3b (snR17b) U3b yes 662 306 328 32.98746 306.84151 169.914485 2.230230404 -0.019304 151 33 19100 YOR312C intron no 507 221 236 32.966462 315.391432 174.178947 2.240995661 -0.087487 151 34 13164 MT_COX1 intronic no 13084 6661 6689 28.67009 299.367728 164.018909 2.214893919 -0.113204 151 35 13277 MT_COX1 exon5a yes 13084 8356 8375 30.558755 298.564034 164.5613945 2.216327959 -0.033424 151 36 16689 YGL030W intron no 330 241 262 30.321547 300.897093 165.60932 2.219084774 -0.055892 151 37 20332 YER074W spliced yes 40 21 37 44.443519 293.15928 168.8013995 2.227376043 0.169069 151 38 11581 "rRNA(18S,5.8S,25S)" 25S yes 7956 4791 4807 158.198916 421.133922 289.666419 2.46189815 -0.004395 151 39 5016 snR10 snR10 yes 445 111 127 60.519269 321.238297 190.878783 2.280757657 0.006097 151 40 8664 LSR1 / U2 RNA 5_flank no 1375 31.966921 287.5674 159.7671605 2.203487517 0.082713 151 41 18695 YNL112W 3_exon no 1102 1081 1095 36.128881 288.591264 162.3600725 2.210479237 0.169903 151 42 2902 Pro8 ProTGG_vii tRNA yes 305 32 i7 36.209039 299.180579 167.694809 2.224519619 0.081764 151 43 14000 MT_COB intronic no 7308 4186 4212 28.053647 297.818476 162.9360615 2.212017214 -0.140067 151 44 10289 RUF7 RUF7 yes 700 56 77 32.067384 295.34337 163.705377 2.214062944 0.036864 151 45 17599 YJL205C 5_exon no 243 1 18 33.966963 293.651487 163.809225 2.214338356 0.101397 151 46 3141 Ser4 SerGCT 3_flank no 301 31.780586 295.102389 163.4414875 2.213362306 0.028986 151 47 8543 snR19 / U1 RNA U1 yes 868 211 228 31.653497 306.649669 169.151583 2.228276066 -0.045869 151 48 3609 Val1 ValAAC_i tRNA yes 274 40 52 45.714152 291.996731 168.8554415 2.227515061 0.183983 151 49 1071 Gly3 GlyGCC 3_flank no 271 29.651244 312.4091 171.030172 2.233072732 -0.148363 151 50 10907 "rRNA(18S,5.8S,25S)" 18S yes 7956 1421 1439 29104.66771 20879.14512 24991.90641 4.397799386 -0.31839 151 51 6661 snR48 3_flank no 313 54.633341 333.927283 194.280312 2.288428792 -0.127908 151 52 13297 MT_COX1 ai5a no 13084 8656 8678 28.246578 297.192684 162.719631 2.211439951 -0.126617 151 53 10556 RUF8 RUF8 yes 1151 706 723 35.735282 288.820907 162.2780945 2.210259899 0.163402 151 54 1562 Leu4 LeuCAA_iv 5_flank no 314 28.658466 284.593946 156.626206 2.194864428 -0.046442 151 55 17668 YKL006C intron no 241 101 120 30.879135 305.0005 167.9398175 2.225153677 -0.061803 151 56 1789 Leu8 LeuTAG_i 5_flank no 301 30.953411 276.306368 153.6298895 2.186475718 0.112606 151 57 8221 snoRNA cluster 3; snR51 yes 743 616 639 30.969059 306.470345 168.719702 2.2271658 -0.067618 151 58 2792 Pro6 ProTGG_v intron/tRNA no 302 i15 38 94.03552 363.64185 228.838685 2.359529443 -0.073969 151 59 15758 YCR031C intron no 407 241 260 32.922522 299.0922 166.007361 2.220127346 0.041123 151 60 5670 snR34 snR34 yes 750 271 290 30.684854 298.148902 164.416878 2.215946397 -0.026562 151 61 21796 copy of SH14861 no 360 30.515078 303.975258 167.245168 2.223353579 -0.067988 151 62 16559 YER133W intron no 625 341 358 32.409341 302.10084 167.2550905 2.223379345 0.006289 151 63 229 Arg3 ArgCCG tRNA yes 272 1 13 43.583098 302.118597 172.8508475 2.237671513 0.083712 151 64 18806 YNL301C intron no 532 461 480 40.386035 288.88381 164.6349225 2.216521964 0.199941 151 65 18102 YLR367W intron no 583 261 277 32.169574 284.580034 158.374804 2.19968609 0.108539 151 66 17268 YHR123W intron no 191 61 73 49.693537 303.350661 176.522099 2.246799083 0.096365 151 67 13773 MT_COB intronic no 7308 781 802 30.265457 328.481017 179.373237 2.253757646 -0.223378 151 68 7875 snoRNA cluster1 snR73 yes 1574 1171 1190 30.392233 287.088808 158.7405205 2.2006878 0.033031 151 69 19376 YPR043W intron no 503 101 118 34.682068 309.444425 172.0632465 2.235688113 -0.019437 151 70 16384 YER007C intron no 203 121 139 30.682498 284.406895 157.5446965 2.197403788 0.060237 151 71 1199 Ile1 IleAAT 5_flank no 274 42.363283 311.354067 176.858675 2.247626367 -0.002925 151 72 18980 YOR096W intron no 501 281 297 33.069678 301.024413 167.0470455 2.222838799 0.029028 151 73 4119 SRP SRP yes 875 486 498 31.118256 279.212681 155.1654685 2.190795077 0.106925 151 74 568 Cys1 CysGCA 3_flank no 272 31.301823 303.916226 167.6090245 2.224297398 -0.041049 151 75 6227 snR42 5_flank no 551 31.539618 304.136845 167.8382315 2.224890895 -0.034483 151 76 15443 YBL087C 5_exon no 604 21 35 152.083652 376.313385 264.1985185 2.421930378 0.195333 151 77 10293 RUF7 RUF7 yes 700 76 93 32.203601 299.894922 166.0492615 2.220236948 0.013133 151 78 3427 Trp1 TrpCCA 5_flank no 306 30.374194 310.923872 170.649033 2.232103832 -0.114434 151 79 17839 YKR094C intron no 468 221 240 32.932614 315.27333 174.102972 2.240806185 -0.086987 151 80 20652 YIL004C spliced yes 40 21 36 1051.937102 4831.251168 2941.594135 3.468582751 -1.966835 151 81 13311 MT_COX1 ai5a no 13084 8866 8887 31.018276 301.277139 166.1477075 2.220494353 -0.034494 151 82 19233 YPL090C intron no 494 221 238 30.924395 292.766822 161.8456085 2.20910092 0.015098 151 83 1624 Leu5 LeuCAA_v 5_flank/tRNA no 315 32.877548 317.050297 174.9639225 2.242948507 -0.10157 151 84 19496 YPT1 YPT1 yes 402 221 233 37.933717 283.790512 160.8621145 2.206453773 0.231544 151 85 20700 YJL001W spliced yes 40 9 25 29.741641 293.84928 161.7954605 2.208966332 -0.032419 151 86 8972 snR17a / U3a U3a yes 690 146 162 48.481117 308.358561 178.419839 2.251443143 0.047075 151 87 17965 YLR185W intron no 459 281 295 66.918505 314.666439 190.792472 2.280561235 0.094953 151 88 21865 copy of SH19500 no 402 82.022124 333.373523 207.6978235 2.317431946 0.049178 151 89 9941 RUF5-1 RUF5-1 yes 975 511 527 32.62374 279.720859 156.1722995 2.193604005 0.154887 151 90 1661 Leu5 LeuCAA_v 3_flank no 315 55.514839 270.975121 163.24498 2.212839835 0.421504 151 91 15003 MT_COX 2; ORF1 COX2 no 2427 646 665 30.596367 292.050944 161.3236555 2.207698054 0.00847 151 92 9245 snR6 / U6 RNA U6/3_flank no 312 30.686801 290.335786 160.5112935 2.205505595 0.022396 151 93 6181 snR40 5_flank no 297 33.921964 320.703962 177.312963 2.248740487 -0.116938 151 94 7315 snR66 snR66 yes 286 66 85 33.005458 289.298876 161.152167 2.20723615 0.105045 151 95 4348 telomerase RNA telomerase yes 1501 776 793 54.349005 310.178028 182.2635165 2.260699745 0.061525 151 96 12193 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7851 7866 39.78611 290.21774 165.001925 2.217489011 0.185703 151 97 1899 Lys1 LysCTT_i 5_flank no 272 37.99285 306.488297 172.2405735 2.236135463 0.02908 151 98 14992 MT_COX 2; ORF1 COX2 no 2427 481 503 29.725992 299.681583 164.7037875 2.216703586 -0.069154 151 99 7215 snR64 3_flank no 301 30.040792 324.791855 177.4163235 2.248993575 -0.206301 151 100 10586 RUF8 RUF8 yes 1151 856 868 48.072045 273.165064 160.6185545 2.205795713 0.37401 151 101 15251 MT_fMet 3_flank no 274 196 222 30.624462 324.869414 177.746938 2.249802128 -0.191173 151 102 3676 Val2 ValAAC_ii 3_flank no 274 33.119971 296.748838 164.9344045 2.217311257 0.061849 151 103 5282 snR30 snR30 yes 801 261 276 37.908119 280.415113 159.161616 2.20183834 0.260835 151 104 2163 Met2 MetCAT_ii 5_flank no 272 31.236292 317.841548 174.53892 2.241892284 -0.128934 152 2 535 Cys1 CysGCA 5_flank no 272 37.330605 849.841157 443.585881 2.646977714 -2.567944 152 3 8002 snoRNA cluster 2 intergenic no 739 246 265 31.808084 425.757434 228.782759 2.359423293 -0.902119 152 4 3293 Thr2 ThrCGT tRNA/3_flank no 272 30.542143 340.128437 185.33529 2.267958122 -0.305722 152 5 4445 telomerase RNA telomerase yes 1501 1261 1273 224.97469 602.660794 413.817742 2.616809107 -0.388386 152 6 1439 Leu2 LeuCAA_ii 5_flank no 314 42.370273 289.332635 165.851454 2.219719283 0.199983 152 7 13593 MT_ATP8/AAP1 5_flank no 347 31 59 30.85334 325.976424 178.414882 2.251431077 -0.196497 152 8 2013 Lys3 LysTTT_i tRNA yes 296 11 25 45.77856 300.524527 173.1515435 2.238426367 0.105222 152 9 1607 Leu5 LeuCAA_v 5_flank no 315 31.406532 318.389103 174.8978175 2.24278439 -0.130937 152 10 7764 snoRNA cluster1 snR76 yes 1574 616 628 61.083621 325.917326 193.5004735 2.286682032 -0.027153 152 11 17543 YJL177W intron no 417 261 278 30.860035 306.711936 168.7859855 2.227336384 -0.072752 152 12 14813 MT_Lys; Arg1; Gly tRNAArg1 yes 682 376 398 28.582398 302.183101 165.3827495 2.218490208 -0.130428 152 13 21311 YPL241C spliced yes 40 13 29 34.016292 289.103598 161.559945 2.208333697 0.137789 152 14 19996 YBR048W spliced yes 40 13 29 109.497799 352.166333 230.832066 2.363296139 0.095977 152 15 13271 MT_COX1 intronic/exon5 no 13084 8266 8283 61.910331 335.326616 198.6184735 2.29801964 -0.094319 152 16 15031 MT_COX 2; ORF1 ORF1exon1 yes 2427 1066 1088 27.65899 326.122163 176.8905765 2.247704697 -0.300085 152 17 21340 YPR098C spliced yes 40 5 26 33.332522 292.734615 163.0335685 2.212277035 0.093605 152 18 17258 YHR101C exon/intron no 187 41 58 27.826171 293.498254 160.6622125 2.205913743 -0.133259 152 19 8803 LSR1 / U2 RNA U2 yes 1375 656 670 50.986425 312.041297 181.513861 2.258909795 0.028109 152 20 3861 RNaseP RNaseP yes 569 271 283 68.965636 326.454812 197.710224 2.296029128 0.016884 152 21 2913 Pro8 ProTGG_vii tRNA yes 305 54 69 88.001302 373.829283 230.9152925 2.363452695 -0.176719 152 22 8186 snoRNA cluster 3; snR70 yes 743 441 457 40.675875 301.337387 171.006631 2.233012951 0.082667 152 23 2077 Lys4 LysTTT_ii intron/tRNA no 296 i14 44 75.107381 371.24994 223.1786605 2.348652667 -0.250767 152 24 5126 snR11 snR11 yes 458 231 250 28.430018 306.270674 167.350346 2.223626615 -0.156626 152 25 7858 snoRNA cluster1 intergenic no 1574 1086 1103 31.694226 299.68067 165.687448 2.219289609 -0.0022 152 26 2933 Pro8 ProTGG_vii 3_flank no 305 97.029807 343.189678 220.1097425 2.342639266 0.077259 152 27 17649 YJR145C intron no 356 221 237 42.475395 309.440805 175.9581 2.245409264 0.014359 152 28 8259 snoRNA cluster4 5_flank no 638 81 98 34.506435 301.48606 167.9962475 2.225299581 0.042851 152 29 14211 MT_ATP9 5_flank no 431 61 85 28.507686 318.620523 173.5641045 2.239459912 -0.22568 152 30 371 Asn1 AsnGTT 5_flank no 274 30.754221 305.837345 168.295783 2.226073234 -0.071081 152 31 9574 RUF3 RUF3 yes 631 256 270 35.069066 297.21395 166.141508 2.220478148 0.084817 152 32 3909 RNase MRP 5_flank no 540 35.12314 293.567289 164.3452145 2.215757063 0.115965 152 33 21018 YMR033W spliced yes 40 17 34 30.883893 290.145191 160.514542 2.205514384 0.030291 152 34 3786 Val4 ValTAC 3_flank no 274 37.024015 317.047646 177.0358305 2.248061173 -0.067922 152 35 9311 RUF1 RUF1 yes 750 131 147 36.781971 306.603145 171.692558 2.234751471 0.025075 152 36 18522 YMR225C intron no 247 61 78 34.443026 305.712574 170.0778 2.23064763 0.007684 152 37 510 Asp2 AspGTC_ii 3_flank no 272 32.169036 308.077184 170.12311 2.230763313 -0.039638 152 38 17061 YGR214W intron no 555 361 375 44.301503 286.037553 165.169528 2.217929928 0.236071 152 39 17647 YJR145C intron no 356 181 196 34.073762 286.322739 160.1982505 2.204657769 0.157348 152 40 9116 snR14 / U4 RNA 3_flank no 360 32.134559 311.686957 171.910758 2.235303055 -0.068871 152 41 12676 MT_Trp 5_flank no 274 61 89 28.19125 330.676524 179.433887 2.253904465 -0.305716 152 42 388 Asn1 AsnGTT tRNA yes 274 20:A 32 51.079715 299.070127 175.074921 2.243223939 0.140637 152 43 18438 YMR142C intron no 502 261 278 40.827109 319.297231 180.06217 2.25542248 -0.077285 152 44 13710 MT_Glu (and 5_flank processing site for COB) 3_flank no 368 181 205 30.47676 331.964111 181.2204355 2.25820717 -0.246565 152 45 4155 SRP SRP/3_flank no 875 30.400602 290.303009 160.3518055 2.205073854 0.01282 152 46 12455 5S rRNA NTS2 no 1420 1231 1248 30.273074 291.366847 160.8199605 2.206339951 0.001695 152 47 10517 RUF8 RUF8 yes 1151 511 532 28.098027 309.828843 168.963435 2.22779273 -0.190258 152 48 20409 YFR032C-A spliced yes 40 5 26 38.219386 319.831379 179.0253825 2.25291461 -0.089446 152 49 3875 RNaseP RNaseP yes 569 341 356 51.541034 311.844 181.692517 2.259337041 0.032436 152 50 6731 snR49 3_flank no 365 38.309904 289.766395 164.0381495 2.214944861 0.184131 152 51 16581 YER179W 3_exon no 192 161 180 30.273454 289.813717 160.0435855 2.204238272 0.011549 152 52 17149 YHR012W exon/intron no 219 41 57 34.608884 315.394066 175.001475 2.243041709 -0.067376 152 53 8528 snR19 / U1 RNA U1 yes 868 136 153 41.103437 295.13326 168.1183485 2.225615115 0.141749 152 54 17759 YKL157W intron no 483 321 340 32.939729 312.444748 172.6922385 2.237272819 -0.064625 152 55 4858 snR8 snR8 yes 390 71 87 97.318128 335.00431 216.161219 2.334777781 0.134311 152 56 12606 MT_15S 15S yes 1848 841 863 31.086507 308.93984 170.0131735 2.230482574 -0.078442 152 57 20315 YER044C-A spliced yes 40 1 15 63.064797 322.763092 192.9139445 2.285363621 0.008829 152 58 8891 LSR1 / U2 RNA U2 yes 1375 1096 1108 87.393922 324.896174 206.145048 2.314172907 0.143856 152 59 4053 SRP SRP yes 875 156 173 31.078419 296.58214 163.8302795 2.214394172 -0.003553 152 60 8942 snR17a / U3a 5_flank/U3a no 690 30.952801 277.025886 153.9893435 2.187490667 0.109112 152 61 5581 snR33 3_flank no 383 32.871899 305.092852 168.9823755 2.227841411 -0.006633 152 62 11892 "rRNA(18S,5.8S,25S)" 25S yes 7956 6346 6361 430.465291 922.675592 676.5704415 2.83031302 -0.418455 152 63 19823 Negative Control no 60 NA #VALUE! 36.636755 302.352311 169.494533 2.229155695 0.060565 152 64 3783 Val4 ValTAC 3_flank no 274 30.320427 329.550763 179.935595 2.255117084 -0.230662 152 65 16579 YER179W intron no 192 121 140 38.502639 320.98454 179.7435895 2.25465341 -0.098827 152 66 18172 YLR448W intron no 484 221 238 32.352888 302.860077 167.6064825 2.224290812 -0.000153 152 67 3183 Ser5 SerTGA tRNA yes 282 36 e24 57.321663 310.067778 183.6947205 2.264096675 0.078248 152 68 17784 YKL180W intron/exon no 406 341 360 34.64858 293.255935 163.9522575 2.214717401 0.112954 152 69 7099 snR63 snR63 yes 455 1 23 32.726261 319.823556 176.2749085 2.246190498 -0.125003 152 70 5046 snR10 3_flank no 445 34.956664 290.808828 162.882746 2.211875082 0.137329 152 71 6558 snR46 3_flank no 397 32.976418 301.061539 167.0189785 2.222765823 0.027554 152 72 13627 MT_ATP6 ATP6 yes 980 211 233 28.857265 313.460225 171.158745 2.233399093 -0.182889 152 73 2461 Phe5 PheGAA_v tRNA yes 291 58 72 158.623096 380.564609 269.5938525 2.430709985 0.206102 152 74 1148 His1 HisGTG 5_flank no 272 29.017074 306.168881 167.5929775 2.224255817 -0.13379 152 75 11742 "rRNA(18S,5.8S,25S)" 25S yes 7956 5596 5611 296.971026 522.241269 409.6061475 2.612366466 0.161545 152 76 3123 Ser4 SerGCT tRNA yes 301 21 33 40.155327 273.14899 156.6521585 2.194936383 0.349562 152 77 9664 RUF4 RUF4 yes 988 96 108 110.840364 358.410616 234.62549 2.370375193 0.065696 152 78 5664 snR34 snR34 yes 750 241 257 36.711343 285.060879 160.886111 2.206518554 0.206944 152 79 4965 snR9 3_flank no 387 32.717319 279.103825 155.910572 2.192875565 0.161944 152 80 3152 Ser4 SerGCT 3_flank no 301 39.771906 316.99186 178.381883 2.251350744 -0.060893 152 81 8878 LSR1 / U2 RNA U2 yes 1375 1031 1043 30.957612 286.614291 158.7859515 2.200812076 0.055324 152 82 21305 YPL218W spliced yes 40 17 33 37.68828 330.144189 183.9162345 2.264620067 -0.179395 152 83 16382 YER007C intron no 203 81 98 30.714722 291.793839 161.2542805 2.207511252 0.014123 152 84 17314 YHR203C intron no 369 261 278 31.430263 323.490975 177.460619 2.249101992 -0.169911 152 85 15607 YBR119W intron no 189 101 120 34.181522 301.892988 168.037255 2.225405578 0.0356 152 86 3984 RNase MRP RNaseMRP/3_flank no 540 34.674267 287.842846 161.2585565 2.207522768 0.159305 152 87 6811 snR52 5_flank no 292 31.003454 292.567316 161.785385 2.208939287 0.019019 152 88 8955 snR17a / U3a U3a yes 690 61 80 30.667737 314.265551 172.466644 2.236705113 -0.124073 152 89 16669 YFR032C intron no 431 261 275 61.686147 306.023636 183.8548915 2.264475189 0.135598 152 90 8253 snoRNA cluster4 5_flank no 638 51 69 42.834496 335.233113 189.0338045 2.276539475 -0.203926 152 91 1041 Gly3 GlyGCC 5_flank no 271 34.578669 332.373601 183.476135 2.263579583 -0.206062 152 92 947 Gly1 GlyCCC_i 5_flank/tRNA no 272 32.580694 279.590985 156.0858395 2.193363505 0.154363 152 93 9425 RUF2 5_flank no 468 36.827082 336.099094 186.463088 2.270592872 -0.231454 152 94 9039 snR17a / U3a U3a/3_flank no 690 53.711606 310.479051 182.0953285 2.260298804 0.055514 152 95 10077 RUF6 RUF6 yes 1251 231 247 35.04762 307.18206 171.11484 2.233287676 0.003039 152 96 15749 YCR031C intron no 407 61 80 31.081992 313.354319 172.2181555 2.236078934 -0.104716 152 97 13420 MT_COX1 intronic no 13084 10501 10527 31.375992 326.20211 178.789051 2.252340919 -0.191252 152 98 19537 CBP1 1.2 CBP1 1.2 yes 401 241 258 33.879574 291.196942 162.538258 2.210955601 0.1203 152 99 18340 YML124C intron no 398 121 137 36.468751 317.783061 177.125906 2.248282085 -0.075775 152 100 10730 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 536 551 41.328725 303.354422 172.3415735 2.236390054 0.065481 152 101 15099 MT_COX 2; ORF1 ORF2exon2 yes 2427 2086 2108 30.618369 317.008628 173.8134985 2.240083501 -0.141757 152 102 18014 YLR287C intron/exon no 530 461 483 33.167261 321.865542 177.5164015 2.249238486 -0.135189 152 103 9083 snR14 / U4 RNA U4 yes 360 31 45 33.441385 289.304111 161.372748 2.207830195 0.118713 152 104 16894 YGL226C exon/intron no 249 41 58 33.670172 317.746405 175.7082885 2.244792248 -0.097126 153 2 4212 telomerase RNA telomerase yes 1501 96 113 32.951174 811.675056 422.313115 2.625634569 -2.530301 153 3 6278 snR42 snR42 yes 551 171 188 36.995688 462.247068 249.621378 2.397281776 -1.085358 153 4 4467 telomerase RNA 3_flank no 1501 32.572674 304.74794 168.660307 2.227012887 -0.007624 153 5 8693 LSR1 / U2 RNA U2 yes 1375 106 122 69.807761 305.786176 187.7969685 2.273688577 0.183273 153 6 13275 MT_COX1 exon5a yes 13084 8326 8345 31.073195 267.013274 149.0432345 2.173312267 0.164164 153 7 2864 Pro7 ProTGG_vi 3_flank no 303 35.922037 309.480454 172.7012455 2.23729547 -0.005179 153 8 14185 MT_COB exon6 yes 7308 6961 6980 31.635482 293.749543 162.6925125 2.211367566 0.032667 153 9 4323 telomerase RNA telomerase yes 1501 651 669 33.408699 266.973919 150.191309 2.176644802 0.265589 153 10 16644 YFR031C 5_exon no 247 1 18 33.141089 299.266682 166.2038855 2.220641172 0.044394 153 11 11509 "rRNA(18S,5.8S,25S)" 25S yes 7956 4431 4448 37815.85427 26846.57242 32331.21335 4.509622003 -0.414739 153 12 11206 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2916 2936 44.146012 314.857558 179.501785 2.254068772 -0.027747 153 13 6987 snR60 snR60 yes 304 16 32 131.272765 435.960437 283.616601 2.452731648 -0.229212 153 14 6438 snR45 snR45 yes 372 36 54 29.789389 276.024723 152.907056 2.184427527 0.054406 153 15 5424 snR31 snR31 yes 425 186 202 38.948013 281.94373 160.4458715 2.205328547 0.258605 153 16 10848 "rRNA(18S,5.8S,25S)" 18S yes 7956 1126 1146 29.403654 283.163303 156.2834785 2.193913069 0.000155 153 17 5662 snR34 snR34 yes 750 231 246 36.911826 300.185099 168.5484625 2.226724795 0.08144 153 18 4282 telomerase RNA telomerase yes 1501 446 461 37.079484 296.226238 166.652861 2.221812774 0.116125 153 19 4431 telomerase RNA telomerase yes 1501 1191 1207 29.774894 285.641182 157.708038 2.197853829 0.008047 153 20 14060 MT_COB bi4 no 7308 5086 5108 26.238724 296.001497 161.1201105 2.207149751 -0.235838 153 21 12293 5S rRNA NTS2 no 1420 421 436 51.709064 304.855298 178.282181 2.251107938 0.093068 153 22 8117 snoRNA cluster 3; 5_flank/snR41 no 743 96 110 48.32115 306.102174 177.211662 2.248492299 0.065651 153 23 6158 snR39B 3_flank no 296 32.974911 286.523625 159.749268 2.203438877 0.121826 153 24 11656 "rRNA(18S,5.8S,25S)" 25S yes 7956 5166 5179 12974.18506 19606.71896 16290.45201 4.211933135 -1.202673 153 25 21737 copy of SH12342 no 1420 68.114173 315.560118 191.8371455 2.282932704 0.095383 153 26 15991 YDL136W intron no 505 401 419 35.99318 284.406736 160.199958 2.204662398 0.204441 153 27 11397 "rRNA(18S,5.8S,25S)" 25S yes 7956 3871 3888 3913.514547 7806.920329 5860.217438 3.76791373 -1.130598 153 28 14001 MT_COB intronic no 7308 4201 4225 30.433562 304.004384 167.218973 2.223285552 -0.070958 153 29 6685 snR49 5_flank no 365 39.001398 305.571471 172.2864345 2.236251083 0.039843 153 30 1870 Leu9 LeuTAG_ii tRNA/3_flank no 301 35.027034 281.244936 158.135985 2.199030708 0.219106 153 31 17162 YHR016C intron no 268 81 97 41.477138 294.251094 167.864116 2.224957868 0.150939 153 32 4788 snR5 snR5 yes 404 111 132 30.986616 297.515646 164.251131 2.215508369 -0.012428 153 33 12036 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7066 7089 35.139016 339.633516 187.386266 2.272737757 -0.264968 153 34 1550 Leu4 LeuCAA_iv 5_flank no 314 64.466275 303.654189 184.060232 2.264959965 0.170984 153 35 18902 YOL120C intron no 547 241 262 30.614691 293.603208 162.1089495 2.209806991 -0.000665 153 36 15317 YAL003W intron no 466 141 160 31.436117 290.460489 160.948303 2.206686402 0.046797 153 37 20853 YLR061W spliced yes 40 13 27 62.225453 310.545794 186.3856235 2.270412411 0.101614 153 38 4781 snR5 snR5 yes 404 76 90 67.239782 336.017315 201.6285485 2.304552024 -0.064942 153 39 7963 snoRNA cluster 2 5_flank no 739 51 67 38.39892 288.413916 163.406418 2.21326911 0.196654 153 40 5999 snR37 5_flank no 586 46.852056 323.808015 185.3300355 2.267945809 -0.090372 153 41 3991 RNase MRP 3_flank no 540 32.605949 304.185942 168.3959455 2.226331631 -0.002639 153 42 4075 SRP SRP yes 875 266 280 8384.977926 8350.318534 8367.64823 3.922603414 -0.314403 153 43 19719 Negative Control no 60 NA #VALUE! 56.123251 304.734978 180.4291145 2.256306618 0.116887 153 44 5364 snR30 3_flank no 801 28.826408 319.035439 173.9309235 2.240376803 -0.216466 153 45 407 Asn1 AsnGTT 3_flank no 274 35.064933 312.057702 173.5613175 2.239452938 -0.035674 153 46 4590 U3b (snR17b) 3_flank no 662 32.840752 309.608633 171.2246925 2.233566395 -0.043336 153 47 15934 YDL115C exon/intron no 189 41 57 36.838282 311.149257 173.9937695 2.240533697 -0.01591 153 48 21591 copy of SH6252 no 551 147.637203 393.017928 270.3275655 2.431890333 0.081153 153 49 18451 YMR143W 5_exon no 644 21 35 67.781895 310.605773 189.193834 2.276906978 0.13236 153 50 21210 YOR096W spliced yes 40 13 29 30.386452 294.881632 162.634042 2.211211456 -0.016478 153 51 9903 RUF5-1 RUF5-1 yes 975 321 340 30.458382 299.280094 164.869238 2.217139631 -0.04127 153 52 10867 "rRNA(18S,5.8S,25S)" 18S yes 7956 1221 1237 242.250214 430.757514 336.503864 2.526990055 0.330052 153 53 11472 "rRNA(18S,5.8S,25S)" 25S yes 7956 4246 4264 4102.052503 8219.535968 6160.794236 3.789636704 -1.159118 153 54 19357 YPL249C intron/exon no 337 281 295 37.21136 283.395924 160.303642 2.204943389 0.227022 153 55 765 Gln4 GlnTTG_iii 3_flank no 272 37.401812 296.267315 166.8345635 2.222286029 0.119366 153 56 18060 YLR333C 3_exon no 523 481 498 58.908126 322.594764 190.751445 2.280467837 -0.014187 153 57 21769 copy of SH13809 no 7308 31.308115 311.531702 171.4199085 2.234061259 -0.086407 153 58 6912 snR58 5_flank no 296 43.09211 303.294728 173.193419 2.238531386 0.071441 153 59 1410 Leu1 LeuCAA_i 3_flank no 315 33.455045 273.919008 153.6870265 2.186637208 0.219752 153 60 15058 MT_COX 2; ORF1 ORF1exon1 yes 2427 1471 1493 29.105856 325.78942 177.447638 2.249070223 -0.244963 153 61 14977 MT_COX 2; ORF1 COX2 no 2427 256 277 31.055089 307.542573 169.298831 2.228653959 -0.071152 153 62 20408 YFR032C-A spliced yes 40 1 20 45.560254 320.741602 183.150928 2.262809124 -0.072122 153 63 3307 Thr2 ThrCGT 3_flank no 272 30.665367 289.776598 160.2209825 2.204719391 0.025216 153 64 7994 snoRNA cluster 2 intergenic no 739 206 224 32.588393 284.436413 158.512403 2.20006325 0.122975 153 65 8190 snoRNA cluster 3; snR70/intergenic no 743 461 480 30.437158 276.876816 153.656987 2.186552313 0.083726 153 66 1221 Ile1 IleAAT tRNA/3_flank no 274 32.499371 279.092855 155.796113 2.192556618 0.155037 153 67 8768 LSR1 / U2 RNA U2 yes 1375 481 493 112.125768 356.980498 234.553133 2.370241238 0.08244 153 68 3513 Tyr1 TyrGTA_i 3_flank no 289 30.620817 310.115962 170.3683895 2.231389018 -0.101199 153 69 3216 Thr1 ThrAGT 5_flank no 273 30.754419 277.137995 153.946207 2.187368993 0.098583 153 70 10308 RUF7 RUF7 yes 700 151 163 86.633003 341.05358 213.8432915 2.330095631 0.025312 153 71 16953 YGR029W 5_exon no 183 21 40 37.241289 323.263564 180.2524265 2.25588112 -0.121637 153 72 15163 MT_Val tRNA yes 276 121 138 30.950883 288.16083 159.5558565 2.20291275 0.045189 153 73 10461 RUF8 RUF8 yes 1151 231 245 49.938603 301.044887 175.491745 2.244256692 0.117715 153 74 20448 YGL103W spliced yes 40 17 31 52.090733 309.900552 180.9956425 2.257668119 0.051544 153 75 4074 SRP SRP yes 875 261 275 849.759286 1368.158436 1108.958861 3.044915435 -0.244909 153 76 13887 MT_COB intronic no 7308 2491 2515 31.258735 293.325656 162.2921955 2.210297635 0.022816 153 77 3415 Trp1 TrpCCA 5_flank no 306 31.584306 311.047927 171.3161165 2.233798221 -0.074374 153 78 7156 snR63 3_flank no 455 31.997618 306.798176 169.397897 2.228908014 -0.035469 153 79 442 Asp1 AspGTC_i tRNA yes 271 31 43 53.443782 309.239529 181.3416555 2.258497576 0.064386 153 80 13114 MT_COX1 ai3 no 13084 5911 5932 30.600035 309.101257 169.850646 2.230067203 -0.095874 153 81 21878 copy of SH18253 no 226 30.840633 289.967007 160.40382 2.205214707 0.029958 153 82 19007 YOR182C 5_exon no 511 21 42 30.902015 315.913383 173.407699 2.239068375 -0.125755 153 83 3724 Val3 ValCAC 3_flank no 273 30.758601 285.224733 157.991667 2.198634181 0.057537 153 84 15811 YDL061C intron no 509 361 377 37.06962 280.376906 158.723263 2.200640583 0.25191 153 85 14041 MT_COB bi4 no 7308 4801 4825 29.964902 322.581454 176.273178 2.246186234 -0.19637 153 86 19745 Negative Control no 60 NA #VALUE! 53.128677 295.03191 174.0802935 2.24074961 0.186183 153 87 7403 snR69 5_flank no 301 28.989695 291.486816 160.2382555 2.204766208 -0.060454 153 88 3079 Ser3 SerCGA tRNA/3_flank no 301 34.880507 291.513605 163.197056 2.21271232 0.130444 153 89 5266 snR30 snR30 yes 801 181 193 67.938778 298.660989 183.2998835 2.263162189 0.231633 153 90 17512 YJL136C intron no 560 201 220 30.349395 290.36337 160.3563825 2.20508625 0.010677 153 91 15951 YDL130W 5_exon no 401 1 18 32.37897 280.156225 156.2675975 2.193868935 0.144159 153 92 12637 MT_15S 15S yes 1848 1306 1326 54.124022 346.038044 200.081033 2.301205921 -0.221795 153 93 13780 MT_COB intronic no 7308 886 905 30.396079 310.948662 170.6723705 2.232163221 -0.113829 153 94 13334 MT_COX1 ai5a no 13084 9211 9233 30.482585 309.761092 170.1218385 2.230760067 -0.103816 153 95 11729 "rRNA(18S,5.8S,25S)" 25S yes 7956 5531 5550 403.180319 759.63999 581.4101545 2.764482613 -0.161368 153 96 17760 YKL157W intron no 483 341 357 39.230542 318.536713 178.8836275 2.252570593 -0.075728 153 97 3787 RNaseP 5_flank no 569 37.505797 305.0754 171.2905985 2.233733527 0.040812 153 98 18130 YLR388W 3_exon no 258 241 256 57.342523 304.110355 180.726439 2.257021691 0.128577 153 99 21310 YPL241C spliced yes 40 9 25 40.658721 306.792959 173.72584 2.23986442 0.032496 153 100 18610 YNL069C intron no 549 361 376 32.403254 287.697564 160.050409 2.204256788 0.096036 153 101 1406 Leu1 LeuCAA_i tRNA yes 315 59 76 35.047839 303.395794 169.2218165 2.228456353 0.033692 153 102 8256 snoRNA cluster4 5_flank no 638 66 83 33.189236 303.46098 168.325108 2.226148902 0.010599 153 103 662 Gln2 GlnTTG_i 3_flank no 272 33.510399 293.357327 163.433863 2.213342046 0.09525 153 104 16327 YDR471W intron no 484 301 317 36.099113 289.609566 162.8543395 2.211799335 0.160857 154 2 3658 Val2 ValAAC_ii tRNA yes 274 30 45 60.914083 646.662644 353.7883635 2.548743544 -1.642968 154 3 1300 Ile2 IleTAT_i 3_flank no 333 30.706519 426.283797 228.495158 2.358877001 -0.910528 154 4 6435 snR45 snR45 yes 372 21 42 34.705072 339.681657 187.1933645 2.27229045 -0.266498 154 5 12076 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7266 7289 32.393135 313.739131 173.066133 2.23821209 -0.081771 154 6 20651 YIL004C spliced yes 40 17 31 42.429963 306.992392 174.7111775 2.242320691 0.035996 154 7 16136 YDR092W 5_exon no 368 1 20 29.886517 294.023579 161.955048 2.209394489 -0.028436 154 8 9141 snR7 U5 RNA 5_flank no 415 35.724276 301.071553 168.3979145 2.226336709 0.060612 154 9 14626 MT_21S Sce1 no 4639 3601 3621 29.450972 300.790352 165.120662 2.217801421 -0.085659 154 10 21356 YPR187W spliced yes 40 13 27 162.158723 377.588819 269.873771 2.431160678 0.240246 154 11 1608 Leu5 LeuCAA_v 5_flank no 315 32.84341 311.443928 172.143669 2.235891055 -0.057909 154 12 9162 snR7 U5 RNA U5 yes 415 81 96 32.450433 292.490954 162.4706935 2.210775034 0.067132 154 13 13474 MT_COX1 intronic no 13084 11311 11332 30.105202 309.567785 169.8364935 2.230031015 -0.115675 154 14 20918 YLR344W spliced yes 40 13 30 41.104422 309.587626 175.346024 2.243895923 0.008385 154 15 12470 5S rRNA 5S yes 1420 1306 1320 14341.57797 9685.101604 12013.33979 4.079663761 0.093184 154 16 21793 copy of SH14653 no 4639 36.734238 350.058178 193.396208 2.286447954 -0.34462 154 17 10944 "rRNA(18S,5.8S,25S)" 18S yes 7956 1606 1621 34.859994 283.678688 159.269341 2.202132183 0.19753 154 18 13048 MT_COX1 ai2 no 13084 4921 4940 30.335542 308.348915 169.3422285 2.228765271 -0.100452 154 19 16478 YER102W intron no 460 201 221 27.750691 316.377448 172.0640695 2.23569019 -0.240775 154 20 20223 YDR092W spliced yes 40 21 40 33.73645 316.839603 175.2880265 2.243752252 -0.089249 154 21 10777 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 771 789 28.329746 288.913403 158.6215745 2.200362256 -0.084426 154 22 18678 YNL112W intron no 1102 741 763 35.455535 332.951816 184.2036755 2.265298292 -0.208632 154 23 12245 5S rRNA NTS2 no 1420 181 200 30.923787 303.075143 166.999465 2.22271508 -0.048635 154 24 17475 YJL001W intron no 216 81 102 31.261395 299.018995 165.140195 2.217852793 -0.012489 154 25 15664 YBR189W intron no 513 421 440 29.592125 299.084052 164.3380885 2.215738231 -0.070192 154 26 7286 snR66 5_flank no 286 31.940532 315.211127 173.5758295 2.239489249 -0.099165 154 27 1395 Leu1 LeuCAA_i tRNA-intron no 315 i8 i20 42.558927 297.968782 170.2638545 2.231122461 0.118263 154 28 15039 MT_COX 2; ORF1 ORF1exon1 yes 2427 1186 1205 30.501321 323.627402 177.0643615 2.248131158 -0.183802 154 29 3310 Thr2 ThrCGT 3_flank no 272 31.783976 296.739107 164.2615415 2.215535894 0.018914 154 30 9406 RUF1 3_flank no 750 39.329704 303.353727 171.3417155 2.233863111 0.06096 154 31 5138 snR11 3_flank no 458 82.939175 361.525482 222.2323285 2.346807237 -0.134933 154 32 18293 YML073C intron no 515 61 78 41.627182 300.508613 171.0678975 2.233168518 0.092473 154 33 3173 Ser5 SerTGA 5_flank/tRNA no 282 31.019811 301.267484 166.1436475 2.220483741 -0.034383 154 34 6418 snR45 5_flank no 372 30.899958 309.419096 170.159527 2.23085627 -0.087581 154 35 12565 MT_15S 15S yes 1848 226 245 28.647805 297.911684 163.2797445 2.212932312 -0.10792 154 36 18812 YNL302C intron no 651 61 78 32.624471 306.268256 169.4463635 2.229032253 -0.019264 154 37 2484 Pro1 ProAGG 5_flank no 272 38.686597 328.980166 183.8333815 2.264424376 -0.166901 154 38 8950 snR17a / U3a U3a yes 690 36 53 40.706628 296.483201 168.5949145 2.22684447 0.128112 154 39 11678 "rRNA(18S,5.8S,25S)" 25S yes 7956 5276 5291 1047.327867 2441.657919 1744.492893 3.241669204 -0.894269 154 40 16841 YGL178W intron no 740 601 617 32.713035 299.950578 166.3318065 2.220975304 0.02918 154 41 3980 RNase MRP RNaseMRP yes 540 316 332 32.960016 297.804681 165.3823485 2.218489155 0.050254 154 42 9742 RUF4 RUF4 yes 988 486 503 33.200519 293.502273 163.351396 2.21312285 0.084639 154 43 5625 snR34 snR34 yes 750 46 65 31.255767 286.560066 158.9079165 2.201145533 0.065681 154 44 825 Glu1 GluCTC 3_flank no 272 31.323696 295.038153 163.1809245 2.212669389 0.014266 154 45 9866 RUF5-1 RUF5-1 yes 975 136 157 31.287167 314.41205 172.8496085 2.2376684 -0.10405 154 46 7600 snR189 snR189 yes 389 71 86 35.39363 268.482951 151.9382905 2.181667236 0.315479 154 47 21493 copy of SH2041 no 296 33.091753 314.51698 173.8043665 2.240060683 -0.079055 154 48 21759 copy of SH13391 no 13084 29.765087 325.985981 177.875534 2.250116217 -0.222686 154 49 14147 MT_COB intronic no 7308 6391 6413 30.665494 318.269451 174.4674725 2.24171447 -0.147459 154 50 16118 YDR064W intron no 639 281 300 30.585897 305.221274 167.9035855 2.22505997 -0.073099 154 51 11048 "rRNA(18S,5.8S,25S)" 18S yes 7956 2126 2143 1161.013419 5404.088566 3282.550993 3.516211481 -2.020802 154 52 18121 YLR388W intron no 258 61 77 30.649435 303.880621 167.265028 2.223405148 -0.062827 154 53 11401 "rRNA(18S,5.8S,25S)" 25S yes 7956 3891 3904 86.384567 323.554645 204.969606 2.311689466 0.147283 154 54 20231 YDR139C spliced yes 40 5 22 35.146219 321.135904 178.1410615 2.250764036 -0.108473 154 55 21744 copy of SH12759 no 13084 52.361501 300.915508 176.6385045 2.247085379 0.130485 154 56 3870 RNaseP RNaseP yes 569 316 332 31.311584 285.598181 158.4548825 2.199905626 0.073735 154 57 14327 MT_VAR1 VAR1 yes 1467 1111 1133 31.462807 320.033141 175.747974 2.244890327 -0.142924 154 58 21436 TH296 - bright yellow; WTP_218 no 31.550919 285.410571 158.480745 2.199976504 0.082896 154 59 8275 snoRNA cluster4 snR67 yes 638 161 179 33.694998 304.310925 169.0029615 2.227894315 0.009949 154 60 15481 YBL092W 5_exon no 433 1 20 29.329528 303.189457 166.2594925 2.220786451 -0.104601 154 61 3381 Thr4 ThrTGT_ii 5_flank/tRNA no 272 37.676528 287.757854 162.717191 2.211433438 0.194418 154 62 5793 snR35 snR35 yes 740 151 172 33.19622 294.387632 163.791926 2.21429249 0.078959 154 63 13759 MT_COB intronic no 7308 571 593 30.872591 307.516352 169.1944715 2.228386168 -0.077149 154 64 14951 MT_Met tRNA yes 276 136 157 28.613328 326.654644 177.633986 2.249526061 -0.267667 154 65 18045 YLR333C intron no 523 181 200 46.195008 353.809053 200.0020305 2.301034405 -0.327406 154 66 6235 snR42 5_flank no 551 51.367304 287.582439 169.4748715 2.229105313 0.245412 154 67 9169 snR7 U5 RNA U5 yes 415 116 132 38.915226 301.20028 170.057753 2.230596436 0.079898 154 68 17527 YJL136C intron/exon no 560 501 522 30.704403 292.94373 161.8240665 2.20904311 0.006531 154 69 8682 LSR1 / U2 RNA U2 yes 1375 51 68 41.31758 286.817337 164.0674585 2.215022451 0.222082 154 70 12993 MT_COX1 ai2 no 13084 4096 4118 28.838971 297.169638 163.0043045 2.212199073 -0.094265 154 71 3964 RNase MRP RNaseMRP yes 540 236 253 30.98055 302.908854 166.944702 2.222572641 -0.045709 154 72 1020 Gly2 GlyCCC_ii 3_flank no 272 36.216367 288.767497 162.491932 2.210831802 0.169396 154 73 18455 YMR143W intron no 644 101 120 41.403412 329.710577 185.5569945 2.26847733 -0.163319 154 74 11448 "rRNA(18S,5.8S,25S)" 25S yes 7956 4126 4143 49.764537 301.529217 175.646877 2.244640432 0.112614 154 75 17084 YHL001W intron no 498 61 75 78.451018 320.626119 199.5385685 2.300026852 0.119733 154 76 4873 snR8 snR8 yes 390 146 160 84.935633 330.717774 207.8267035 2.317701349 0.086792 154 77 14858 MT_Ser2; Arg2 tRNASer yes 360 136 157 29.161896 307.70947 168.435683 2.226434102 -0.137832 154 78 7567 snR189 5_flank no 389 39.223631 291.112107 165.167869 2.217925566 0.175805 154 79 4498 U3b (snR17b) U3b yes 662 46 63 38.695968 297.16647 167.931219 2.225131441 0.117055 154 80 19157 YPL075W intron no 851 661 680 34.794087 331.351977 183.073032 2.262624374 -0.196894 154 81 13197 MT_COX1 exon4 yes 13084 7156 7173 32.916985 289.860649 161.388817 2.207873438 0.098671 154 82 16921 YGL251C intron no 252 181 198 33.072182 307.930422 170.501302 2.2317277 -0.026996 154 83 10413 RUF8 5_flank/RUF8 no 1151 30.770186 305.217112 167.993649 2.225292864 -0.066801 154 84 8403 snoRNA cluster 5 snR190 yes 586 181 198 34.943626 327.486357 181.2149915 2.258194123 -0.163714 154 85 1948 Lys2 LysCTT_ii 5_flank no 273 38.848748 301.537088 170.192918 2.230941484 0.07662 154 86 12864 MT_COX1 ai1 no 13084 2161 2181 29.587142 306.130043 167.8585925 2.224943577 -0.11324 154 87 19661 SIR1 2.2 SIR1 2.2 yes 401 341 357 35.456154 300.384032 167.920093 2.225102666 0.063143 154 88 17330 YIL018W 5_exon no 500 1 20 28.697526 297.964767 163.3311465 2.213069011 -0.105462 154 89 11062 "rRNA(18S,5.8S,25S)" 18S yes 7956 2196 2214 595.869865 2040.526744 1318.198305 3.119980749 -1.341457 154 90 9914 RUF5-1 RUF5-1 yes 975 376 398 30.297814 272.242144 151.269979 2.179752747 0.099075 154 91 16785 YGL103W intron no 611 381 400 28.160582 301.579966 164.870274 2.21714236 -0.150869 154 92 21361 Ile2_3 spliced yes 40 9 25 31.198443 279.188327 155.193385 2.190873206 0.11104 154 93 12276 5S rRNA NTS2 no 1420 336 356 30.184273 293.948841 162.066557 2.209693406 -0.017616 154 94 16882 YGL189C intron no 269 61 82 28.19333 310.131131 169.1622305 2.228303403 -0.187537 154 95 7939 snoRNA cluster1 3_flank no 1574 1491 1510 36.558184 299.877223 168.2177035 2.2258717 0.07999 154 96 18789 YNL301C intron no 532 121 133 40.992574 258.698459 149.8455165 2.175643753 0.492434 154 97 3243 Thr1 ThrAGT tRNA/3_flank no 273 35.118189 350.350021 192.734105 2.284958571 -0.351822 154 98 9143 snR7 U5 RNA 5_flank/U5 no 415 31.332667 296.818774 164.0757205 2.21504432 0.003486 154 99 5073 snR11 5_flank no 458 36.117247 294.094946 165.1060965 2.21776311 0.123083 154 100 1965 Lys2 LysCTT_ii tRNA yes 273 26 45 34.473211 306.623232 170.5482215 2.231847195 0.000696 154 101 20520 YGR034W spliced yes 40 13 29 32.744414 294.543896 163.644155 2.213900498 0.063672 154 102 1259 Ile2 IleTAT_i 5_flank/tRNA no 333 33.164769 292.451525 162.808147 2.211676133 0.090118 154 103 14549 MT_21S 21S_rRNA3 yes 4639 2446 2474 31.240117 333.993209 182.616663 2.261540403 -0.251381 154 104 10201 RUF6 RUF6 yes 1251 851 873 32.671194 303.850856 168.261025 2.22598353 0.000912 155 2 14679 MT_21S 21S_rRNA4 yes 4639 4396 4420 33.08683 669.842737 351.4647835 2.545881816 -2.063585 155 3 17832 YKR094C intron no 468 81 100 30.831866 407.53478 219.183323 2.340807507 -0.786155 155 4 17068 YGR214W intron/exon no 555 501 517 30.662368 292.491293 161.5768305 2.208379085 0.007946 155 5 11884 "rRNA(18S,5.8S,25S)" 25S yes 7956 6306 6321 93.692332 342.512203 218.1022675 2.338660181 0.060953 155 6 2610 Pro3 ProTGG_ii tRNA yes 303 1 13 235.506184 470.497397 353.0017905 2.547776908 0.131462 155 7 10331 RUF7 RUF7 yes 700 266 283 29.998414 279.917843 154.9581285 2.190214363 0.04662 155 8 1784 Leu8 LeuTAG_i 5_flank no 301 35.841448 296.313634 166.077541 2.220310906 0.101335 155 9 15708 YBR220C intron no 521 321 335 57.78029 312.365014 185.072652 2.267342248 0.061505 155 10 9094 snR14 / U4 RNA U4 yes 360 86 98 114.543812 356.390716 235.467264 2.371930538 0.100821 155 11 827 Glu2 GluTTC_i 5_flank no 272 36.841755 311.884625 174.36319 2.241454806 -0.022497 155 12 12071 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7241 7259 30.536076 292.029947 161.2830115 2.207588624 0.006543 155 13 5891 snR36 5_flank no 555 28.188418 299.120244 163.654331 2.213927503 -0.138428 155 14 4579 U3b (snR17b) U3b/3_flank no 662 37.25421 285.872955 161.5635825 2.208343475 0.205992 155 15 10139 RUF6 RUF6 yes 1251 541 553 123.324987 421.510875 272.417931 2.43523569 -0.207032 155 16 18798 YNL301C intron no 532 301 318 34.745439 302.983115 168.864277 2.227537785 0.033468 155 17 10709 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 431 446 44.041805 281.20213 162.6219675 2.211179211 0.283156 155 18 14280 MT_VAR1 VAR1 yes 1467 406 430 26.503153 286.176749 156.339951 2.194069972 -0.178628 155 19 8939 snR17a / U3a 5_flank no 690 30.484893 279.458503 154.971698 2.190252392 0.073802 155 20 13214 MT_COX1 ai4 no 13084 7411 7428 33.666225 303.861855 168.76404 2.227279913 0.013245 155 21 20395 YFL039C spliced yes 40 21 35 49.511899 310.436772 179.9743355 2.255210579 0.034511 155 22 13450 MT_COX1 intronic no 13084 10951 10975 30.575707 309.215675 169.895691 2.230182364 -0.097386 155 23 11376 "rRNA(18S,5.8S,25S)" 25S yes 7956 3766 3782 28147.79988 19972.74023 24060.27005 4.381300498 -0.285643 155 24 12040 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7086 7103 37.270028 312.70324 174.986634 2.243004877 -0.028766 155 25 8824 LSR1 / U2 RNA U2 yes 1375 761 782 37.696725 282.181875 159.9393 2.203955191 0.242998 155 26 21852 copy of SH17602 no 243 32.00449 288.218523 160.1115065 2.204422544 0.079775 155 27 19482 ADH1 ADH1 yes 400 341 360 30.289084 278.340004 154.314544 2.18840686 0.06913 155 28 7417 snR69 5_flank/snR69 no 301 34.729606 303.674097 169.2018515 2.228405111 0.027649 155 29 1488 Leu3 LeuCAA_iii 5_flank no 314 32.908831 277.827844 155.3683375 2.191362519 0.176475 155 30 13703 MT_Glu (and 5_flank processing site for COB) 5_flank/tRNA no 368 76 102 28.896626 310.164039 169.5303325 2.229247414 -0.162003 155 31 18489 YMR194W intron no 563 141 159 37.44781 309.563983 173.5058965 2.239314239 -0.000139 155 32 7113 snR63 snR63 yes 455 71 88 31.148946 283.893905 157.5214255 2.197339633 0.079317 155 33 7063 snR62 3_flank no 300 29.008188 286.702663 157.8554255 2.198259513 -0.037426 155 34 10375 RUF7 RUF7 yes 700 486 500 37.338554 299.829117 168.5838355 2.22681593 0.088871 155 35 8823 LSR1 / U2 RNA U2 yes 1375 756 777 32.977544 297.667566 165.322555 2.218332109 0.051657 155 36 15240 MT_fMet 5_flank no 274 31 59 28.661981 298.885906 163.7739435 2.214244806 -0.111498 155 37 21608 copy of SH6884 no 288 30.654801 292.600696 161.6277485 2.208515923 0.007 155 38 17752 YKL157W intron no 483 181 197 47.34333 314.302715 180.8230225 2.257253724 -0.00916 155 39 20828 YKR094C spliced yes 40 9 26 30.76129 313.144844 171.953067 2.235409926 -0.114315 155 40 3242 Thr1 ThrAGT tRNA/3_flank no 273 30.958006 283.576946 157.267476 2.196638917 0.074953 155 41 6319 snR42 3_flank no 551 29.085549 293.065993 161.075771 2.207030219 -0.06252 155 42 21087 YMR292W spliced yes 40 25 37 39.966643 304.034696 172.0006695 2.235530137 0.056162 155 43 20931 YLR388W spliced yes 40 13 32 35.877624 325.260748 180.569186 2.25664364 -0.142252 155 44 13179 MT_COX1 exon4 yes 13084 6886 6905 31.654606 287.139836 159.397221 2.202480745 0.0752 155 45 20501 YGR001C spliced yes 40 17 34 31.611371 297.121049 164.36621 2.215812541 0.01086 155 46 19263 YPL143W intron no 625 141 157 37.885919 290.635904 164.2609115 2.215534228 0.172118 155 47 17852 YKR095W 5_exon no 175 21 37 54.720889 322.395552 188.5582205 2.275445471 -0.036457 155 48 17032 YGR183C intron no 313 81 100 31.053326 303.45204 167.252683 2.223373093 -0.046558 155 49 15595 YBR089C intron no 214 61 77 32.946845 279.609612 156.2782285 2.19389848 0.16591 155 50 21204 YOL127W spliced yes 40 17 32 41.152864 288.082096 164.61748 2.216475949 0.209424 155 51 2675 Pro4 ProTGG_iii tRNA-intron no 302 i5 i21 36.890814 315.000119 175.9454665 2.245378081 -0.050148 155 52 7252 snR65 snR65 yes 300 36 53 30.665755 296.35287 163.5093125 2.213542492 -0.016087 155 53 3752 Val4 ValTAC 5_flank/tRNA no 274 32.865016 297.263892 165.064454 2.21765356 0.050586 155 54 17439 YIL133C intron no 390 261 283 30.954335 304.054962 167.5046485 2.224026864 -0.053547 155 55 10360 RUF7 RUF7 yes 700 411 428 40.721747 298.651806 169.6867765 2.229648 0.107783 155 56 21368 Leu1_5 spliced yes 40 9 23 31.404184 311.298468 171.351326 2.23388747 -0.081828 155 57 14804 MT_Lys; Arg1; Gly intergenic no 682 241 269 29.453499 309.381763 169.417631 2.228958605 -0.137421 155 58 467 Asp1 AspGTC_i 3_flank no 271 31.714878 271.210117 151.4624975 2.180305114 0.175156 155 59 18870 YNR053C intron no 631 381 398 31.735029 297.473829 164.604429 2.216441517 0.012752 155 60 18440 YMR142C intron no 502 301 318 31.652845 314.754977 173.203911 2.238557694 -0.099332 155 61 1934 Lys1 LysCTT_i 3_flank no 272 31.485792 309.912304 170.699048 2.232231099 -0.070902 155 62 11934 "rRNA(18S,5.8S,25S)" 25S yes 7956 6556 6571 48.305726 308.128539 178.2171325 2.250949452 0.048155 155 63 5839 snR35 snR35 yes 740 381 393 82.949642 354.787686 218.868664 2.340183587 -0.090746 155 64 16762 YGL087C intron no 185 101 117 41.315966 275.525017 158.4204915 2.199811356 0.334309 155 65 15794 YDL061C 5_exon no 509 21 40 30.685494 298.660749 164.6731215 2.216622718 -0.029698 155 66 17198 YHR021C intron no 650 541 561 30.622561 289.536573 160.079567 2.204335901 0.025283 155 67 9800 RUF4 RUF4/3_flank no 988 32.727421 316.439852 174.5836365 2.242003535 -0.098702 155 68 1258 Ile2 IleTAT_i 5_flank/tRNA no 333 30.74246 289.615686 160.179073 2.204605776 0.028861 155 69 5865 snR35 snR35 yes 740 511 528 35.061288 296.183801 165.6225445 2.219119453 0.093306 155 70 8157 snoRNA cluster 3; intergenic/snR70 no 743 296 315 30.974441 306.434678 168.7045595 2.22712682 -0.067223 155 71 6657 snR48 snR48/3_flank no 313 28.913742 290.412738 159.66324 2.203204938 -0.059614 155 72 17266 YHR123W 5_exon no 191 21 40 30.980177 313.529213 172.254695 2.236171068 -0.10917 155 73 18321 YML085C intron no 216 121 138 35.082636 323.402617 179.2426265 2.253441299 -0.128291 155 74 5724 snR34 snR34/3_flank no 750 28.698278 291.730908 160.214593 2.204702071 -0.077267 155 75 17924 YLR078C intron no 189 61 73 39.119027 268.56635 153.8426885 2.187076861 0.380549 155 76 15585 YBR084C intron no 606 461 478 30.836416 300.339808 165.588112 2.219029154 -0.034897 155 77 2349 Phe3 PheGAA_iii tRNA yes 291 53 69 41.638135 308.452035 175.045085 2.243149921 0.020302 155 78 19884 Negative Control no 60 NA #VALUE! 37.844203 296.938207 167.391205 2.223732636 0.11717 155 79 8783 LSR1 / U2 RNA U2 yes 1375 556 573 34.053084 309.639646 171.846365 2.23514035 -0.028574 155 80 21133 YNL147W spliced yes 40 5 19 102.605106 325.354152 213.979629 2.33037243 0.232738 155 81 19001 YOR122C intron no 309 201 222 30.520303 296.960905 163.740604 2.214156388 -0.024826 155 82 816 Glu1 GluCTC 3_flank no 272 32.965638 289.712066 161.338852 2.207738962 0.101157 155 83 6635 snR48 snR48 yes 313 1 20 30.744683 290.538817 160.64175 2.205858427 0.023077 155 84 16654 YFR031C 3_exon no 247 201 218 32.768383 307.304958 170.0366705 2.230542592 -0.025793 155 85 21671 copy of SH9621 no 631 32.369521 304.128938 168.2492295 2.225953084 -0.007313 155 86 10917 "rRNA(18S,5.8S,25S)" 18S yes 7956 1471 1487 253.200308 451.40163 352.300969 2.546913838 0.279967 155 87 20144 YDL108W spliced yes 40 25 39 146.504869 668.682655 407.593762 2.610227529 -0.996825 155 88 15345 YBL018C exon/intron no 175 41 62 28.765965 302.100287 165.433126 2.218622476 -0.120116 155 89 8655 LSR1 / U2 RNA 5_flank no 1375 30.49547 300.438797 165.4671335 2.218711743 -0.047114 155 90 13766 MT_COB intronic no 7308 676 693 32.297913 306.243751 169.270832 2.228582129 -0.023232 155 91 3182 Ser5 SerTGA tRNA yes 282 31 e13 32.127659 290.086097 161.106878 2.207114082 0.071894 155 92 3196 Ser5 SerTGA 3_flank no 282 36.104269 275.769266 155.9367675 2.192948527 0.281935 155 93 4313 telomerase RNA telomerase yes 1501 601 620 31.987701 325.856335 178.922018 2.252663788 -0.180636 155 94 5665 snR34 snR34 yes 750 246 263 32.017845 289.71258 160.8652125 2.206462137 0.070691 155 95 17639 YJR145C 5_exon no 356 21 38 46.490365 308.406216 177.4482905 2.24907182 0.036409 155 96 12655 MT_15S 15S yes 1848 1576 1593 30.325402 307.14873 168.737066 2.227210493 -0.093621 155 97 4314 telomerase RNA telomerase yes 1501 606 624 30.663053 305.769529 168.216291 2.225868053 -0.073773 155 98 17433 YIL133C intron no 390 141 162 28.988936 320.39207 174.690503 2.242269295 -0.218408 155 99 14677 MT_21S 21S_rRNA4 yes 4639 4366 4388 31.592826 326.251845 178.9223355 2.252664558 -0.188777 155 100 17925 YLR078C intron no 189 81 100 29.931687 329.708327 179.820007 2.25483801 -0.237762 155 101 12941 MT_COX1 ai2 no 13084 3316 3335 34.830697 319.120949 176.975823 2.247913941 -0.093763 155 102 18672 YNL112W intron no 1102 621 637 33.070337 282.598985 157.834661 2.198202382 0.150237 155 103 17337 YIL018W intron no 500 141 158 33.46916 286.689772 160.079466 2.204335627 0.136294 155 104 242 Arg3 ArgCCG tRNA/3_flank no 272 33.803598 297.0599 165.431749 2.218618861 0.070881 156 2 10827 "rRNA(18S,5.8S,25S)" 18S yes 7956 1021 1040 832.088744 1224.221497 1028.155121 3.012058643 -0.091069 156 3 17421 YIL111W intron no 188 81 100 31.026823 379.874595 205.450709 2.312707644 -0.589197 156 4 20963 YML025C spliced yes 40 21 38 31.903857 290.847788 161.3758225 2.207838469 0.059767 156 5 2147 Met1 MetCAT_i 3_flank no 273 34.812262 298.861646 166.836954 2.222292252 0.068111 156 6 7341 snR68 5_flank no 336 32.462499 293.616344 163.0394215 2.212292626 0.06045 156 7 20617 YHR097C spliced yes 40 9 26 36.300017 307.164237 171.732127 2.234851549 0.01772 156 8 12853 MT_COX1 ai1 no 13084 1996 2010 56.448752 315.846227 186.1474895 2.269857183 0.025896 156 9 20744 YJL205C-A spliced yes 40 5 24 31.658542 288.50412 160.081331 2.204340687 0.066603 156 10 14988 MT_COX 2; ORF1 COX2 no 2427 421 438 33.358793 307.802367 170.58058 2.231929587 -0.022396 156 11 7881 snoRNA cluster1 snR73 yes 1574 1201 1217 42.887972 308.138686 175.513329 2.244310104 0.027302 156 12 17603 YJL205C intron no 243 81 102 30.603316 298.975889 164.7896025 2.216929806 -0.03444 156 13 408 Asn1 AsnGTT 3_flank no 274 33.985396 301.509558 167.747477 2.224655997 0.036358 156 14 20641 YHR203C spliced yes 40 1 16 297.90978 638.344991 468.1273855 2.670364048 -0.199823 156 15 21392 Pro2_7 spliced yes 40 1 17 40.572628 319.393534 179.983081 2.255231682 -0.079003 156 16 17829 YKR094C 5_exon no 468 21 36 60.86048 298.921479 179.8909795 2.255009387 0.190795 156 17 12619 MT_15S 15S yes 1848 1036 1052 45.845883 314.721862 180.2838725 2.255956878 -0.020572 156 18 8140 snoRNA cluster 3; intergenic no 743 211 223 62.993561 352.902886 207.9482235 2.317955215 -0.213205 156 19 12920 MT_COX1 ai2 no 13084 3001 3018 27.66404 292.612022 160.138031 2.204494484 -0.138312 156 20 15428 YBL072C intron no 408 121 138 56.653615 392.422122 224.5378685 2.351289596 -0.519447 156 21 10596 RUF8 RUF8 yes 1151 906 918 37.993416 300.043023 169.0182195 2.227933522 0.088466 156 22 19829 Negative Control no 60 NA #VALUE! 36.525643 294.428973 165.477308 2.218738447 0.124934 156 23 6686 snR49 5_flank no 365 32.034803 284.076068 158.0554355 2.198809436 0.107418 156 24 3037 Ser2 SerAGA_ii 3_flank no 282 31.417095 301.835887 166.626491 2.221744049 -0.024565 156 25 21178 YNR053C spliced yes 40 13 25 72.509735 330.248747 201.379241 2.3040147 0.01048 156 26 2063 Lys4 LysTTT_ii 5_flank no 296 38.264936 307.44402 172.854478 2.237680635 0.021032 156 27 20165 YDL136W spliced yes 40 5 22 36.587117 316.432085 176.509601 2.246768333 -0.063575 156 28 4452 telomerase RNA telomerase/3_flank no 1501 36.916754 326.369336 181.643045 2.259218774 -0.149152 156 29 5693 snR34 snR34 yes 750 386 405 30.895661 297.375429 164.135545 2.215202642 -0.01463 156 30 3948 RNase MRP RNaseMRP yes 540 156 170 49.048 315.085882 182.066941 2.260231095 -0.007042 156 31 12771 MT_COX1 ai1 no 13084 766 785 29.068675 307.326267 168.197471 2.225819462 -0.138881 156 32 13489 MT_COX1 intronic no 13084 11536 11558 29.115954 292.63628 160.876117 2.206491575 -0.058942 156 33 4948 snR9 snR9 yes 387 146 160 56.754258 334.643204 195.698731 2.29158801 -0.120196 156 34 3135 Ser4 SerGCT tRNA yes 301 33.266401 300.390784 166.8285925 2.222270486 0.036691 156 35 7896 snoRNA cluster1 intergenic no 1574 1276 1294 33.159527 302.717961 167.938744 2.225150901 0.016287 156 36 10083 RUF6 RUF6 yes 1251 261 282 35.157504 324.827291 179.9923975 2.255254162 -0.140378 156 37 16835 YGL178W intron no 740 481 493 54.066683 299.209411 176.638047 2.247084254 0.153365 156 38 19056 YOR234C intron no 627 501 517 37.239575 290.317938 163.7787565 2.214257569 0.167699 156 39 8723 LSR1 / U2 RNA U2 yes 1375 256 273 35.280762 304.74297 170.011866 2.230479234 0.025485 156 40 13319 MT_COX1 ai5a no 13084 8986 9007 31.266615 311.771749 171.519182 2.234312697 -0.08921 156 41 3729 Val3 ValCAC 3_flank no 273 29.366011 309.492485 169.429248 2.228988383 -0.141186 156 42 9259 snR6 / U6 RNA 3_flank no 312 31.711538 307.523258 169.617398 2.229470397 -0.049193 156 43 8023 snoRNA cluster 2 snR55 yes 739 351 370 34.014448 295.414518 164.714483 2.216731787 0.087182 156 44 11332 "rRNA(18S,5.8S,25S)" 25S yes 7956 3546 3566 31.898089 308.191818 170.0449535 2.230563748 -0.047067 156 45 19232 YPL090C intron no 494 201 220 29.678983 326.055306 177.8671445 2.250095733 -0.226102 156 46 20473 YGL189C spliced yes 40 1 18 31.679359 305.277749 168.478554 2.226544626 -0.03676 156 47 21615 copy of SH7316 no 286 35.725651 294.280059 165.002855 2.217491459 0.117014 156 48 2257 Phe1 PheGAA_i 3_flank no 292 31.200695 309.174302 170.1874985 2.230927655 -0.07601 156 49 21278 YPL129W spliced yes 40 9 25 32.007282 314.288988 173.148135 2.238417818 -0.09106 156 50 11261 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3191 3204 37.035618 298.591441 167.8135295 2.224826972 0.095981 156 51 1491 Leu3 LeuCAA_iii 5_flank no 314 30.654756 314.694081 172.6744185 2.237228002 -0.127024 156 52 9324 RUF1 RUF1 yes 750 196 215 30.650444 323.751988 177.201216 2.248466698 -0.182307 156 53 7931 snoRNA cluster1 snR72 yes 1574 1451 1465 37.027788 288.134938 162.581363 2.21107076 0.18399 156 54 19919 YAL030W spliced yes 40 5 19 43.59868 286.245108 164.921894 2.217278314 0.232569 156 55 5882 snR35 3_flank no 740 31.209315 309.490738 170.3500265 2.231342205 -0.077605 156 56 21337 YPR063C spliced yes 40 17 35 31.473924 305.703814 168.588869 2.226828897 -0.046122 156 57 16936 YGR027C intron no 412 81 97 64.18597 382.232922 223.209446 2.34871257 -0.39952 156 58 21843 copy of SH17173 no 650 29.67374 324.037314 176.855527 2.247618637 -0.214856 156 59 19194 YPL081W exon/intron no 601 41 57 36.190527 294.065934 165.1282305 2.217821327 0.124166 156 60 8249 snoRNA cluster4 5_flank no 638 31 48 31.781843 288.311199 160.046521 2.204246238 0.071893 156 61 3804 RNaseP 5_flank no 569 59.675323 350.176962 204.9261425 2.311597365 -0.216768 156 62 11092 "rRNA(18S,5.8S,25S)" 18S yes 7956 2346 2359 35.656134 258.228602 146.942368 2.167147034 0.394894 156 63 3024 Ser2 SerAGA_ii tRNA/3_flank no 282 33.263594 308.498129 170.8808615 2.232693425 -0.029159 156 64 7763 snoRNA cluster1 snR76 yes 1574 611 626 39.335511 311.078546 175.2070285 2.243551524 -0.009286 156 65 19904 snR17B spliced yes 40 21 38 30.751457 298.219236 164.4853465 2.216127214 -0.024732 156 66 21515 copy of SH3110 no 301 30.658462 318.851043 174.7547525 2.242428995 -0.15106 156 67 9207 snR6 / U6 RNA 5_flank no 312 117.815253 330.801165 224.308209 2.350845168 0.283763 156 68 13704 MT_Glu (and 5_flank processing site for COB) 5_flank/tRNA no 368 91 110 32.825593 315.903362 174.3644775 2.241458013 -0.093269 156 69 6267 snR42 snR42 yes 551 116 137 32.96016 289.940988 161.450574 2.208039593 0.099529 156 70 17793 YKL186C intron no 249 121 137 30.982909 306.447424 168.7151665 2.227154125 -0.067014 156 71 18928 YOL121C intron no 490 221 242 28.938259 323.282176 176.1102175 2.245784553 -0.236768 156 72 21492 copy of SH2040 no 296 37.347067 301.666094 169.5065805 2.229186563 0.071825 156 73 19685 Negative Control no 60 NA #VALUE! 33.031239 284.857385 158.944312 2.201244991 0.134347 156 74 2681 Pro4 ProTGG_iii tRNA yes 302 42 54 94.744008 359.229135 226.9865715 2.356000165 -0.04154 156 75 12162 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7696 7711 1274.270446 2303.23618 1788.753313 3.252550451 -0.545315 156 76 19883 Negative Control no 60 NA #VALUE! 34.975365 291.796837 163.386101 2.213215109 0.129168 156 77 21893 copy of SH18803 no 532 54.207336 313.513893 183.8606145 2.264488707 0.03306 156 78 10311 RUF7 RUF7 yes 700 166 185 30.230999 308.919133 169.575066 2.229361995 -0.107459 156 79 4272 telomerase RNA telomerase yes 1501 396 413 36.020951 278.884961 157.452956 2.197150818 0.253214 156 80 19522 ACT1 ACT1 yes 401 341 362 29.992219 314.43257 172.2123945 2.236064405 -0.14831 156 81 6808 snR52 5_flank no 292 37.000006 297.995941 167.4979735 2.224009557 0.100517 156 82 6511 snR46 snR46 yes 397 46 63 32.847469 312.271733 172.559601 2.236939128 -0.064418 156 83 12011 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6941 6958 39.623963 325.072756 182.3483595 2.260901861 -0.130717 156 84 625 Gln2 GlnTTG_i 5_flank no 272 30.546784 302.323332 166.435058 2.221244812 -0.056871 156 85 14113 MT_COB intronic no 7308 5881 5902 30.22202 305.656333 167.9391765 2.225152019 -0.088219 156 86 16767 YGL103W 5_exon no 611 21 37 342.351405 539.831511 441.091458 2.644528647 0.25243 156 87 8000 snoRNA cluster 2 intergenic no 739 236 255 33.543547 304.321856 168.9327015 2.227713727 0.007995 156 88 14432 MT_21S 21S_rRNA3 yes 4639 691 709 42.486161 298.65863 170.5723955 2.231908749 0.111676 156 89 3282 Thr2 ThrCGT tRNA yes 272 11 25 74.351242 320.970647 197.6609445 2.295920866 0.091041 156 90 21750 copy of SH12971 no 13084 28.139064 293.07893 160.608997 2.20576987 -0.113981 156 91 6116 snR39B 5_flank no 296 29.957594 290.793969 160.3757815 2.205138786 -0.006255 156 92 16946 YGR027C intron no 412 281 299 29.803357 283.652369 156.727863 2.195146212 0.018836 156 93 18240 YML026C intron no 501 401 422 29.720348 284.389658 157.055003 2.196051775 0.011045 156 94 16695 YGL031C exon/intron no 556 41 57 37.80031 298.728735 168.2645225 2.225992557 0.100266 156 95 2374 Phe4 PheGAA_iv 5_flank no 291 58.322114 317.889293 188.1057035 2.274401964 0.019397 156 96 16242 YDR381W intron no 866 741 757 38.219929 301.271024 169.7454765 2.22979821 0.077596 156 97 14375 MT_ORF9; ORF10 ORF10 yes 578 391 419 30.394893 320.447609 175.421251 2.244082204 -0.169272 156 98 15713 YBR220C intron no 521 421 437 41.328901 292.155825 166.742363 2.222045952 0.170579 156 99 6055 snR37 snR37 yes 586 191 208 31.350708 315.710792 173.53075 2.239376444 -0.110797 156 100 5042 snR10 snR10/3_flank no 445 34.054213 322.027442 178.0408275 2.250519604 -0.125504 156 101 13879 MT_COB intronic no 7308 2371 2393 30.207918 327.675743 178.9418305 2.252711876 -0.2181 156 102 6461 snR45 snR45/3_flank no 372 32.892657 314.543629 173.718143 2.239845178 -0.081763 156 103 5428 snR31 snR31 yes 425 206 225 32.17744 285.286521 158.7319805 2.200664435 0.104229 156 104 2320 Phe3 PheGAA_iii 5_flank no 291 31.361398 316.506613 173.9340055 2.240384498 -0.116877 157 2 916 Glu3 GluTTC_ii 3_flank no 272 34.626754 414.823892 224.725323 2.351652013 -0.818519 157 3 6101 snR37 3_flank no 586 48.469451 333.787688 191.1285695 2.281325609 -0.162166 157 4 18113 YLR367W intron no 583 481 497 80.974654 321.253116 201.113885 2.303442056 0.130452 157 5 11876 "rRNA(18S,5.8S,25S)" 25S yes 7956 6266 6281 11896.23262 17196.85005 14546.54133 4.162759745 -1.090562 157 6 6982 snR60 5_flank/snR60 no 304 32.640302 291.128296 161.884299 2.209204729 0.081822 157 7 3771 Val4 ValTAC 3_flank no 274 32.35431 311.477249 171.9157795 2.235315741 -0.064386 157 8 17257 YHR101C 5_exon no 187 21 38 34.112274 301.392443 167.7523585 2.224668635 0.038861 157 9 8735 LSR1 / U2 RNA U2 yes 1375 316 337 35.832994 277.887297 156.8601455 2.195512614 0.259904 157 10 1413 Leu1 LeuCAA_i 3_flank no 315 39.502827 325.889077 182.695952 2.261728925 -0.138033 157 11 9366 RUF1 RUF1 yes 750 406 421 39.057863 293.794786 166.4263245 2.221222022 0.149788 157 12 15174 MT_COX3 5_flank no 1010 31 59 34.61662 285.296031 159.9563255 2.204001419 0.180467 157 13 796 Glu1 GluCTC 5_flank/tRNA no 272 36.021779 306.991557 171.506668 2.23428101 0.015924 157 14 13555 MT_COX1 exon6 yes 13084 12526 12542 32.630157 300.305935 166.468046 2.221330882 0.024352 157 15 21550 copy of SH4563 no 662 44.438761 339.320024 191.8793925 2.283028335 -0.226884 157 16 6581 snR47 snR47 yes 299 11 30 34.781346 304.06256 169.421953 2.228969684 0.025106 157 17 4331 telomerase RNA telomerase yes 1501 691 705 62.816405 315.339406 189.0779055 2.276640783 0.066256 157 18 630 Gln2 GlnTTG_i 5_flank no 272 27.474881 280.107131 153.791006 2.186930938 -0.090985 157 19 341 Arg5 ArgTCT tRNA yes 272 41 57 42.872142 323.193835 183.0329885 2.262529371 -0.103596 157 20 15067 MT_COX 2; ORF1 ORF1exon1 yes 2427 1606 1627 28.119835 301.747314 164.9335745 2.217309071 -0.153857 157 21 5813 snR35 snR35 yes 740 251 268 30.449335 287.55598 159.0026575 2.201404383 0.031998 157 22 815 Glu1 GluCTC 3_flank no 272 30.868937 292.816806 161.8428715 2.209093575 0.012909 157 23 3629 Val1 ValAAC_i 3_flank no 274 37.240221 314.754558 175.9973895 2.245506226 -0.047108 157 24 3231 Thr1 ThrAGT tRNA yes 273 11 25 55.907352 324.060103 189.9837275 2.278716404 -0.043423 157 25 170 Arg2 ArgACG_ii 5_flank no 273 29.958116 291.963726 160.960921 2.206720448 -0.012993 157 26 17978 YLR211C intron no 159 81 98 34.371646 298.810841 166.5912435 2.22165217 0.063257 157 27 13413 MT_COX1 intronic no 13084 10396 10418 36.763529 345.585221 191.174375 2.281429679 -0.309232 157 28 7614 snR189 snR189 yes 389 141 162 30.785106 284.208147 157.4966265 2.197271256 0.065011 157 29 2917 Pro8 ProTGG_vii 3_flank no 305 35.19593 292.261861 163.7288955 2.214125332 0.127836 157 30 19045 YOR234C intron no 627 281 298 33.261943 306.86496 170.0634515 2.230610989 -0.016062 157 31 932 Gly1 GlyCCC_i 5_flank no 272 29.143283 295.107098 162.1251905 2.209850499 -0.068681 157 32 10441 RUF8 RUF8 yes 1151 131 147 37.703333 283.258379 160.480856 2.205423232 0.23366 157 33 11137 "rRNA(18S,5.8S,25S)" 18S yes 7956 2571 2588 19361.44659 12709.09526 16035.27093 4.205076302 0.007671 157 34 19609 RNA14 1.1 RNA14 1.1 yes 401 81 98 31.294179 306.158921 168.72655 2.227183426 -0.054841 157 35 4178 telomerase RNA 5_flank no 1501 32.286484 298.613951 165.4502175 2.218667342 0.023698 157 36 20064 YBR230C spliced yes 40 5 22 31.166176 311.606227 171.3862015 2.233975853 -0.091592 157 37 20372 YER179W spliced yes 40 1 17 33.260292 291.600709 162.4305005 2.210667583 0.098485 157 38 12066 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7216 7236 35.43764 316.935909 176.1867745 2.245973305 -0.070935 157 39 5388 snR31 snR31 yes 425 6 24 31.338348 299.155645 165.2469965 2.218133575 -0.010763 157 40 20400 YFR024C-A spliced yes 40 17 36 33.672598 302.959157 168.3158775 2.226125086 0.020676 157 41 6005 snR37 5_flank no 586 33.899866 274.383918 154.141892 2.187920685 0.230423 157 42 18781 YNL265C 3_exon no 205 161 177 34.093658 304.389469 169.2415635 2.228507029 0.014182 157 43 14972 MT_COX 2; ORF1 COX2 no 2427 181 197 45.108603 313.04882 179.0787115 2.253043961 -0.008872 157 44 6723 snR49 snR49 yes 365 141 158 40.761711 308.338978 174.5503445 2.24192071 0.018682 157 45 2383 Phe4 PheGAA_iv 5_flank no 291 31.965202 303.142794 167.553998 2.224154795 -0.014459 157 46 5169 snR13 snR13 yes 324 1 20 33.946122 301.62584 167.785981 2.224755671 0.034926 157 47 8750 LSR1 / U2 RNA U2 yes 1375 391 406 33.688701 292.433863 163.061282 2.212350852 0.106596 157 48 5520 snR32 3_flank no 388 33.396373 301.691499 167.543936 2.224128714 0.027628 157 49 1090 Gly4 GlyTCC 5_flank no 272 82.870379 389.157758 236.0140685 2.372937891 -0.304507 157 50 9740 RUF4 RUF4 yes 988 476 493 30.785568 293.683066 162.234317 2.210142725 0.004647 157 51 2297 Phe2 PheGAA_ii tRNA/3_flank no 292 28.572927 291.58713 160.0800285 2.204337153 -0.083412 157 52 11861 "rRNA(18S,5.8S,25S)" 25S yes 7956 6191 6206 71.504799 365.787857 218.646328 2.339742188 -0.241489 157 53 7402 snR69 5_flank no 301 28.652047 294.914022 161.7830345 2.208932977 -0.094223 157 54 6601 snR47 3_flank no 299 34.101626 292.635141 163.3683835 2.213168012 0.111603 157 55 3137 Ser4 SerGCT tRNA/3_flank no 301 1136.008502 1191.939631 1163.974067 3.065943304 0.347762 157 56 14272 MT_VAR1 VAR1 yes 1467 286 310 29.373944 318.958763 174.1663535 2.240964259 -0.196375 157 57 1743 Leu7 LeuTAA tRNA yes 284 11 24 6072.144876 4616.443379 5344.294128 3.727890352 0.280397 157 58 8690 LSR1 / U2 RNA U2 yes 1375 91 112 28.645737 304.347815 166.496776 2.221405828 -0.136494 157 59 6796 snR50 3_flank no 290 31.918794 279.796358 155.857576 2.192727918 0.131579 157 60 8492 snR19 / U1 RNA 5_flank no 868 31.840342 292.973342 162.406842 2.210604322 0.044279 157 61 15675 YBR191W intron no 488 141 157 33.827229 309.056743 171.441986 2.234117189 -0.026672 157 62 17628 YJR094W intron no 375 161 177 37.871798 305.093683 171.4827405 2.234220415 0.041531 157 63 21008 YML124C spliced yes 40 1 20 31.212414 306.125083 168.6687485 2.227034623 -0.05737 157 64 10606 RUF8 3_flank no 1151 37.295285 284.811773 161.053529 2.206970246 0.215639 157 65 18042 YLR333C intron no 523 121 137 32.876041 292.885346 162.8806935 2.21186961 0.078258 157 66 16373 YER003C intron no 193 81 103 47.384449 297.566916 172.4756825 2.236727872 0.137261 157 67 4139 SRP SRP yes 875 586 602 64.154743 322.470897 193.31282 2.286260656 0.017234 157 68 9790 RUF4 RUF4 yes 988 726 745 60.072873 384.3023 222.1875865 2.346719791 -0.443315 157 69 21807 copy of SH15282 no 701 41.32553 287.299625 164.3125775 2.215670808 0.217405 157 70 7123 snR63 snR63 yes 455 121 138 30.970737 278.645908 154.8083225 2.189794305 0.102247 157 71 17103 YHL001W intron/exon no 498 441 460 28.954626 301.164351 165.0594885 2.217640495 -0.105827 157 72 21522 copy of SH3383 no 272 37.410711 305.548084 171.4793975 2.234211949 0.036254 157 73 21275 YPL090C spliced yes 40 21 38 33.121267 291.289448 162.2053575 2.210065194 0.096078 157 74 6335 snR43 5_flank no 409 45.661347 294.802452 170.2318995 2.231040945 0.157588 157 75 17020 YGR148C intron no 479 321 338 39.24193 326.767318 183.004624 2.262462063 -0.146359 157 76 10198 RUF6 RUF6 yes 1251 836 853 30.86338 313.719576 172.291478 2.236263797 -0.114232 157 77 21095 YNL044W spliced yes 40 5 20 37.318169 308.722589 173.020379 2.238097259 0.007149 157 78 21526 copy of SH3561 no 289 69.735431 351.479045 210.607238 2.323473293 -0.157958 157 79 18318 YML085C intron no 216 61 73 66.216386 314.748759 190.4825725 2.279855248 0.089887 157 80 13422 MT_COX1 intronic no 13084 10531 10545 34.244385 278.542698 156.3935415 2.194218814 0.213284 157 81 21234 YOR293W spliced yes 40 9 26 32.461523 287.674598 160.0680605 2.204304683 0.098059 157 82 5342 snR30 snR30 yes 801 561 575 34.959951 299.175343 167.067647 2.222892356 0.067272 157 83 3785 Val4 ValTAC 3_flank no 274 30.612635 305.069491 167.841063 2.224898221 -0.071271 157 84 3544 Tyr2 TyrGTA_ii 5_flank/tRNA no 289 34.947557 299.137681 167.042619 2.222827291 0.067436 157 85 9040 snR17a / U3a U3a/3_flank no 690 30.224952 277.932827 154.0788895 2.18774314 0.067786 157 86 15986 YDL136W intron no 505 301 315 63.638444 304.854443 184.2464435 2.265399113 0.156397 157 87 19107 YOR312C intron no 507 361 380 31.463842 309.555649 170.5097455 2.231749206 -0.06951 157 88 11542 "rRNA(18S,5.8S,25S)" 25S yes 7956 4596 4613 619.557844 1448.456485 1034.007165 3.014523548 -0.734511 157 89 8125 snoRNA cluster 3; snR41 yes 743 136 152 42.966587 333.580804 188.2736955 2.274789647 -0.190051 157 90 9689 RUF4 RUF4 yes 988 221 237 34.228896 310.24091 172.234903 2.236121165 -0.031236 157 91 6933 snR58 snR58 yes 296 26 43 37.961891 324.133766 181.0478285 2.25779332 -0.127398 157 92 8306 snoRNA cluster4 intergenic no 638 316 333 35.6759 319.143533 177.4097165 2.248977402 -0.089718 157 93 8059 snoRNA cluster 2 intergenic no 739 531 547 45.588627 311.366487 178.477557 2.251583613 0.007416 157 94 2805 Pro6 ProTGG_v 3_flank no 302 33.490687 286.481256 159.9859715 2.204081903 0.138305 157 95 14086 MT_COB bi4 no 7308 5476 5497 31.586437 329.315244 180.4508405 2.256358909 -0.211958 157 96 189 Arg2 ArgACG_ii tRNA yes 273 61 73 10067.77547 7604.489871 8836.132669 3.946262228 0.064444 157 97 1785 Leu8 LeuTAG_i 5_flank no 301 44.503505 289.498918 167.0012115 2.222719622 0.203726 157 98 18098 YLR367W intron no 583 181 195 57.723763 302.280058 180.0019105 2.255277115 0.14617 157 99 3554 Tyr2 TyrGTA_ii intron/tRNA no 289 i2 43 31.085532 284.938291 158.0119115 2.198689827 0.070428 157 100 18480 YMR143W 3_exon no 644 601 617 46.719315 321.748514 184.2339145 2.26536958 -0.074226 157 101 9871 RUF5-1 RUF5-1 yes 975 161 173 81.59765 278.757911 180.1777805 2.255701233 0.47692 157 102 5768 snR35 snR35 yes 740 26 40 38.211059 277.358364 157.7847115 2.19806492 0.291218 157 103 2193 Met2 MetCAT_ii 3_flank no 272 35.338581 319.469006 177.4037935 2.248962902 -0.093434 157 104 4860 snR8 snR8 yes 390 81 93 127.321335 309.650476 218.4859055 2.339423426 0.482378 158 2 19561 CBP1 2.2 CBP1 2.2 yes 401 321 344 33.740355 362.215953 197.978154 2.29661727 -0.448541 158 3 2034 Lys3 LysTTT_i 3_flank no 296 33.564249 317.657813 175.611031 2.244551793 -0.097742 158 4 14469 MT_21S 21S_rRNA3 yes 4639 1246 1272 31.206347 302.341545 166.773946 2.222128205 -0.034675 158 5 2135 Met1 MetCAT_i tRNA yes 273 61 73 97.276825 326.098462 211.6876435 2.325695508 0.195766 158 6 17988 YLR275W intron no 190 121 140 32.775075 299.8076 166.2913375 2.220869626 0.032037 158 7 9365 RUF1 RUF1 yes 750 401 418 40.760151 317.499797 179.129974 2.253168263 -0.062034 158 8 1437 Leu2 LeuCAA_ii 5_flank no 314 28.087694 306.850197 167.4689455 2.223934286 -0.177965 158 9 10549 RUF8 RUF8 yes 1151 671 692 29.857159 306.592892 168.2250255 2.225890603 -0.106535 158 10 6059 snR37 snR37 yes 586 211 228 30.572604 290.300474 160.436539 2.205303285 0.018727 158 11 6276 snR42 snR42 yes 551 161 182 31.228848 315.92039 173.574619 2.239486221 -0.11481 158 12 2017 Lys3 LysTTT_i tRNA/intron no 296 31 i20 30.824953 300.189114 165.5070335 2.218816455 -0.034361 158 13 277 Arg4 ArgCCT 5_flank no 272 34.24479 290.20031 162.22255 2.210111224 0.133986 158 14 8478 snoRNA cluster 5 3_flank no 586 556 573 28.033054 285.48159 156.757322 2.195227835 -0.084872 158 15 9385 RUF1 RUF1 yes 750 501 517 77.041743 356.338074 216.6899085 2.335838686 -0.140889 158 16 19700 Negative Control no 60 NA #VALUE! 34.977881 289.998958 162.4884195 2.210822414 0.144472 158 17 7238 snR65 5_flank no 300 48.09606 286.458868 167.277464 2.223437436 0.243738 158 18 17684 YKL006W intron no 498 181 200 26.71002 284.345267 155.5276435 2.191807592 -0.157706 158 19 8794 LSR1 / U2 RNA U2 yes 1375 611 630 31.745052 287.035649 159.3903505 2.202462026 0.078848 158 20 6923 snR58 5_flank no 296 28.342301 313.840287 171.091294 2.233227911 -0.203923 158 21 8367 snoRNA cluster 5 5_flank no 586 1 16 38.548818 318.147718 178.348268 2.251268896 -0.073914 158 22 1664 Leu5 LeuCAA_v 3_flank no 315 31.16932 289.328648 160.248984 2.204795285 0.045086 158 23 4878 snR8 snR8 yes 390 171 183 43.665258 314.692844 179.179051 2.253287232 -0.027871 158 24 19777 Negative Control no 60 NA #VALUE! 31.952938 308.125008 170.038973 2.230548473 -0.044874 158 25 19025 YOR182C intron no 511 381 397 42.565415 306.967992 174.7667035 2.242458695 0.036668 158 26 14004 MT_COB intronic no 7308 4246 4272 32.568063 312.194994 172.3815285 2.236490727 -0.067347 158 27 11854 "rRNA(18S,5.8S,25S)" 25S yes 7956 6156 6176 34.907985 302.183406 168.5456955 2.226717666 0.041932 158 28 19600 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 301 318 30.940121 298.786762 164.8634415 2.217124361 -0.021846 158 29 10915 "rRNA(18S,5.8S,25S)" 18S yes 7956 1461 1474 36.395041 306.888459 171.64175 2.234622934 0.021022 158 30 6106 snR37 3_flank no 586 31.257177 288.910023 160.0836 2.204346842 0.050691 158 31 4136 SRP SRP yes 875 571 583 67.77933 319.588193 193.6837615 2.287093211 0.062037 158 32 21027 YMR116C spliced yes 40 5 21 37.840532 304.579715 171.2101235 2.233529441 0.046167 158 33 9802 RUF4 RUF4/3_flank no 988 31.462583 318.232596 174.8475895 2.242659649 -0.128984 158 34 3431 Trp1 TrpCCA 5_flank/tRNA no 306 33.578834 326.704643 180.1417385 2.25561435 -0.166961 158 35 1921 Lys1 LysCTT_i tRNA yes 272 61 73 42.074566 293.834398 167.954482 2.225191598 0.156205 158 36 1503 Leu3 LeuCAA_iii 5_flank/tRNA no 314 33.494788 315.137519 174.3161535 2.241337634 -0.078914 158 37 14435 MT_21S 21S_rRNA3 yes 4639 736 753 31.369792 309.014665 170.1922285 2.230939725 -0.069415 158 38 10970 "rRNA(18S,5.8S,25S)" 18S yes 7956 1736 1754 112.343877 363.172865 237.758371 2.376135817 0.046053 158 39 6778 snR50 snR50 yes 290 66 80 55.233257 332.869373 194.051315 2.28791659 -0.116453 158 40 17892 YLR048W intron no 459 361 377 33.902355 295.172986 164.5376705 2.216265344 0.087837 158 41 19667 SIR1 2.4 SIR1 2.4 yes 401 61 75 34.097276 306.81472 170.455998 2.231612288 -0.005387 158 42 1531 Leu3 LeuCAA_iii 3_flank no 314 36.428115 298.182106 167.3051105 2.223509207 0.092523 158 43 13066 MT_COX1 intronic no 13084 5191 5212 32.144148 305.229747 168.6869475 2.227081479 -0.021261 158 44 727 Gln4 GlnTTG_iii 5_flank no 272 29.947589 316.968227 173.457908 2.239194104 -0.164653 158 45 8300 snoRNA cluster4 intergenic no 638 286 302 38.537826 289.452766 163.995296 2.214831391 0.189263 158 46 10785 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 811 826 6820.181562 13920.85921 10370.52039 4.01580055 -1.417836 158 47 1951 Lys2 LysCTT_ii 5_flank no 273 31.584366 312.072953 171.8286595 2.235095602 -0.080429 158 48 16801 YGL137W intron no 300 101 118 31.311294 299.137637 165.2244655 2.218074356 -0.011554 158 49 14718 MT_Cys; His 5_flank/tRNAcys no 456 91 110 45.831438 348.638281 197.2348595 2.294983675 -0.29082 158 50 12950 MT_COX1 ai2 no 13084 3451 3472 41.294075 338.646764 189.9704195 2.278685982 -0.237049 158 51 3496 Tyr1 TyrGTA_i tRNA yes 289 20:A 34 55.782252 298.51179 177.147021 2.248333853 0.16849 158 52 20424 YGL031C spliced yes 40 17 34 126.979119 426.440438 276.7097785 2.442024507 -0.20907 158 53 15468 YBL087C intron no 604 521 533 62.247707 329.010828 195.6292675 2.291433829 -0.044302 158 54 16742 YGL076C intron no 559 261 280 30.952811 322.143734 176.5482725 2.246863472 -0.165935 158 55 228 Arg3 ArgCCG 5_flank/tRNA no 272 33.34929 302.745569 168.0474295 2.225431874 0.018424 158 56 5338 snR30 snR30 yes 801 541 560 33.650211 304.296501 168.973356 2.22781823 0.009516 158 57 12004 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6906 6928 31.738476 323.839595 177.7890355 2.249904974 -0.168532 158 58 6930 snR58 snR58 yes 296 11 31 31.871735 303.026867 167.449301 2.223883339 -0.016813 158 59 10313 RUF7 RUF7 yes 700 176 197 32.978116 306.902421 169.9402685 2.2302963 -0.019912 158 60 8594 snR19 / U1 RNA U1 yes 868 466 482 42.647366 337.337133 189.9922495 2.278735885 -0.221518 158 61 11675 "rRNA(18S,5.8S,25S)" 25S yes 7956 5261 5276 1996.605128 5642.922949 3819.764039 3.582036536 -1.414543 158 62 1290 Ile2 IleTAT_i 3_flank no 333 31.45537 315.371368 173.413369 2.239082576 -0.106758 158 63 1576 Leu4 LeuCAA_iv tRNA-intron no 314 i13 i27 31.222676 308.30441 169.763543 2.22984443 -0.070087 158 64 11582 "rRNA(18S,5.8S,25S)" 25S yes 7956 4796 4809 131.507989 389.007135 260.257562 2.415403357 0.012163 158 65 21332 YPR043W spliced yes 40 21 38 86.434341 366.241473 226.337907 2.354757296 -0.140448 158 66 12783 MT_COX1 ai1 no 13084 946 965 30.661105 322.030648 176.3458765 2.246365309 -0.169239 158 67 18384 YMR116C intron no 373 181 200 36.864262 296.759546 166.811904 2.222227039 0.10927 158 68 19732 Negative Control no 60 NA #VALUE! 34.841333 279.52226 157.1817965 2.196402248 0.224867 158 69 11563 "rRNA(18S,5.8S,25S)" 25S yes 7956 4701 4718 14918.04619 27403.68045 21160.86332 4.325533382 -1.588389 158 70 15783 YDL029W 5_exon no 223 21 38 50.991138 330.724943 190.8580405 2.280710461 -0.123437 158 71 2237 Phe1 PheGAA_i tRNA yes 292 42 54 91.34655 350.324621 220.8355855 2.344069057 -0.005789 158 72 17144 YHR010W intron/exon no 661 601 617 31.129191 304.430612 167.7799015 2.224739935 -0.049938 158 73 9654 RUF4 RUF4 yes 988 46 60 35.346444 287.803279 161.5748615 2.208373792 0.167595 158 74 10452 RUF8 RUF8 yes 1151 186 205 31.065351 309.460405 170.262878 2.23111997 -0.082253 158 75 9684 RUF4 RUF4 yes 988 196 213 37.340314 302.828443 170.0843785 2.230664427 0.061063 158 76 15836 YDL075W intron no 521 161 178 37.351489 291.710971 164.53123 2.216248344 0.157111 158 77 20246 YDR367W spliced yes 40 21 38 37.481873 294.233072 165.8574725 2.219735043 0.137279 158 78 2195 Met2 MetCAT_ii 3_flank no 272 31.359815 274.289642 152.8247285 2.184193633 0.142628 158 79 15274 MT_9S 9S yes 701 286 314 29.534963 314.031564 171.7832635 2.234980849 -0.162003 158 80 12489 5S rRNA NTS1 no 1420 1401 1418 35.316356 302.636487 168.9764215 2.227826109 0.043045 158 81 7654 snoRNA cluster1 5_flank no 1574 66 85 30.20931 303.72799 166.96865 2.222634936 -0.077006 158 82 12180 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7786 7804 30.445763 301.982599 166.214181 2.220668074 -0.058254 158 83 9457 RUF2 RUF2 yes 468 126 143 32.753436 301.643489 167.1984625 2.223232279 0.019972 158 84 5205 snR13 3_flank no 324 30.446759 331.417558 180.9321585 2.257515764 -0.2429 158 85 9976 RUF5-1 RUF5-1 yes 975 686 703 34.584532 293.987962 164.286247 2.215601209 0.106027 158 86 3672 Val2 ValAAC_ii 3_flank no 274 34.146778 315.342892 174.744835 2.242404348 -0.072541 158 87 15014 MT_COX 2; ORF1 COX2 no 2427 811 828 33.62841 310.724586 172.176498 2.23597387 -0.042414 158 88 20039 YBR186W spliced yes 40 21 37 35.20203 306.053102 170.627566 2.232049196 0.013958 158 89 18239 YML026C intron no 501 381 395 49.253205 292.717636 170.9854205 2.232959081 0.188369 158 90 16868 YGL187C intron no 442 221 237 38.309976 351.183375 194.7466755 2.289470053 -0.347441 158 91 12450 5S rRNA NTS2 no 1420 1206 1218 97.579472 321.772708 209.67609 2.321548909 0.228199 158 92 20266 YDR424C spliced yes 40 9 26 33.538324 322.969426 178.253875 2.25103898 -0.139043 158 93 8490 snR19 / U1 RNA 5_flank no 868 67.535481 298.249097 182.892289 2.262195395 0.232997 158 94 19328 YPL218W intron no 239 121 140 31.310949 297.848574 164.5797615 2.216376429 -0.003614 158 95 13571 MT_COX1 exon6 yes 13084 12766 12788 31.392841 287.346241 159.369541 2.202405322 0.065206 158 96 14046 MT_COB bi4 no 7308 4876 4898 29.601356 327.155747 178.3785515 2.251342633 -0.235041 158 97 15568 YBR084C intron no 606 121 135 56.484847 310.797917 183.641382 2.263970552 0.067796 158 98 2676 Pro4 ProTGG_iii tRNA-intron no 302 i20 i24 1238.266426 1957.915956 1598.091191 3.203601558 -0.32699 158 99 14730 MT_Cys; His intergenic/tRNAhis no 456 271 293 28.731021 320.549926 174.6404735 2.2421449 -0.228647 158 100 9267 RUF1 5_flank no 750 85.853671 333.836 209.8448355 2.321898285 0.070592 158 101 7282 snR66 5_flank no 286 34.018093 326.769995 180.394044 2.256222195 -0.162074 158 102 13530 MT_COX1 intronic no 13084 12151 12173 30.129277 329.999222 180.0642495 2.255427495 -0.236641 158 103 15584 YBR084C intron no 606 441 459 35.014229 277.648222 156.3312255 2.194045732 0.242421 158 104 5815 snR35 snR35 yes 740 261 278 30.868983 297.067461 163.968222 2.214759687 -0.013624 159 2 15611 YBR181C 5_exon no 452 1 20 31.649359 348.339987 189.994673 2.278741425 -0.349932 159 3 11658 "rRNA(18S,5.8S,25S)" 25S yes 7956 5176 5191 334.810573 726.382058 530.5963155 2.72476423 -0.296687 159 4 8345 snoRNA cluster4 snR53 yes 638 511 530 31.276405 275.06675 153.1715775 2.185178185 0.134723 159 5 2058 Lys4 LysTTT_ii 5_flank no 296 41.610316 306.970161 174.2902385 2.241273064 0.033417 159 6 10245 RUF6 3_flank no 1251 30.739587 262.828003 146.783795 2.166678112 0.16843 159 7 15645 YBR189W exon/intron no 513 41 57 34.589447 292.286608 163.4380275 2.213353112 0.120429 159 8 20157 YDL130W spliced yes 40 1 15 40.428372 293.19165 166.810011 2.222222111 0.158679 159 9 2188 Met2 MetCAT_ii tRNA/3_flank no 272 31.920304 304.883625 168.4019645 2.226347153 -0.02647 159 10 5401 snR31 snR31 yes 425 71 85 45.741731 327.537766 186.6397485 2.271004141 -0.126495 159 11 10435 RUF8 RUF8 yes 1151 101 121 29.305309 294.471298 161.8883035 2.209215472 -0.057194 159 12 8095 snoRNA cluster 2 3_flank no 739 711 727 34.858755 331.108239 182.983497 2.262411923 -0.194668 159 13 1950 Lys2 LysCTT_ii 5_flank no 273 32.455966 322.206673 177.3313195 2.248785446 -0.146783 159 14 10531 RUF8 RUF8 yes 1151 581 602 32.029845 275.423068 153.7264565 2.186748617 0.164211 159 15 11370 "rRNA(18S,5.8S,25S)" 25S yes 7956 3736 3753 3310.644444 5523.667202 4417.155823 3.64514272 -0.758566 159 16 16210 YDR381W intron no 866 101 115 39.039871 302.989326 171.0145985 2.233033185 0.063643 159 17 3047 Ser3 SerCGA 5_flank no 301 36.204865 305.590145 170.897505 2.232735722 0.02933 159 18 5592 snR33 3_flank no 383 33.585702 313.061422 173.323562 2.238857606 -0.061457 159 19 4307 telomerase RNA telomerase yes 1501 571 587 32.054789 298.285391 165.17009 2.217931405 0.018204 159 20 4232 telomerase RNA telomerase yes 1501 196 210 63.872356 335.429284 199.65082 2.300271098 -0.082161 159 21 20134 YDL083C spliced yes 40 9 25 33.045512 301.342067 167.1937895 2.223220141 0.026119 159 22 1499 Leu3 LeuCAA_iii 5_flank no 314 38.57293 294.941435 166.7571825 2.222084549 0.137764 159 23 11827 "rRNA(18S,5.8S,25S)" 25S yes 7956 6021 6036 13536.74714 13202.59905 13369.67309 4.126120788 -0.492994 159 24 5533 snR33 5_flank no 383 32.326032 294.231738 163.278885 2.212930026 0.052196 159 25 20677 YIL106W spliced yes 40 17 34 30.551533 286.195619 158.373576 2.199682723 0.044227 159 26 17634 YJR094W intron no 375 281 302 30.781699 299.23679 165.0092445 2.217508276 -0.029977 159 27 10401 RUF8 5_flank no 1151 30.973541 294.688991 162.831266 2.211737799 0.004707 159 28 10180 RUF6 RUF6 yes 1251 746 760 38.540841 296.932447 167.736644 2.22462795 0.11889 159 29 7363 snR68 snR68 yes 336 36 48 4876.409115 11420.9348 8148.671957 3.911086835 -1.496858 159 30 14223 MT_ATP9 ATP9 yes 431 241 258 33.538469 288.343184 160.9408265 2.206666227 0.127866 159 31 7090 snR63 5_flank no 455 35.791044 300.400669 168.0958565 2.225557008 0.066899 159 32 13452 MT_COX1 intronic no 13084 10981 11005 29.448035 309.794576 169.6213055 2.229480401 -0.14007 159 33 13585 MT_COX1 exon6/3_flank no 13084 12976 12998 31.623823 301.250079 166.436951 2.221249751 -0.014139 159 34 10191 RUF6 RUF6 yes 1251 801 817 42.364103 313.402306 177.8832045 2.250134945 -0.020908 159 35 9917 RUF5-1 RUF5-1 yes 975 391 408 31.591688 285.259492 158.42559 2.199825333 0.085219 159 36 1109 Gly4 GlyTCC tRNA yes 272 21 35 37.996897 282.574916 160.2859065 2.204895338 0.242842 159 37 17893 YLR048W intron no 459 381 400 33.719629 316.18153 174.9505795 2.242915385 -0.084317 159 38 6402 snR43 3_flank no 409 33.790622 286.594955 160.1927885 2.204642961 0.146885 159 39 14389 MT_21S 5_flank no 4639 46 72 31.765215 320.654325 176.20977 2.246029984 -0.143755 159 40 11700 "rRNA(18S,5.8S,25S)" 25S yes 7956 5386 5399 6672.581821 7645.334142 7158.957982 3.854849813 -0.445708 159 41 8587 snR19 / U1 RNA U1 yes 868 431 447 36.413157 295.833868 166.1235125 2.220431105 0.111892 159 42 569 Cys1 CysGCA 3_flank no 272 45.282152 305.836787 175.5594695 2.24442426 0.055607 159 43 435 Asp1 AspGTC_i 5_flank/tRNA no 271 32.186023 296.533095 164.359559 2.215794967 0.033319 159 44 7375 snR68 snR68 yes 336 96 113 33.223738 316.94823 175.085984 2.243251381 -0.096437 159 45 11475 "rRNA(18S,5.8S,25S)" 25S yes 7956 4261 4277 1860.728373 3462.325846 2661.52711 3.425130894 -0.702587 159 46 17408 YIL106W 5_exon no 185 1 20 33.984085 292.063011 163.023548 2.212250341 0.11501 159 47 8584 snR19 / U1 RNA U1 yes 868 416 432 31.599128 290.888526 161.243827 2.207483097 0.049487 159 48 8651 snR19 / U1 RNA 3_flank no 868 31.351199 294.154331 162.752765 2.211528376 0.020706 159 49 14892 MT_Ile 5_flank no 276 31 59 28.997055 301.534986 165.2660205 2.21818357 -0.106431 159 50 7842 snoRNA cluster1 snR74 yes 1574 1006 1025 35.088425 321.751088 178.4197565 2.251442942 -0.11397 159 51 10767 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 721 736 41.209054 291.505625 166.3573395 2.221041966 0.176539 159 52 3954 RNase MRP RNaseMRP yes 540 186 200 32.799627 287.562672 160.1811495 2.204611406 0.109596 159 53 20762 YJR145C spliced yes 40 5 19 382.780996 565.199738 473.990367 2.675769516 0.294947 159 54 16532 YER131W intron no 461 261 276 43.630166 302.705934 173.16805 2.238467766 0.078538 159 55 17059 YGR214W intron no 555 321 338 32.283992 281.344345 156.8141685 2.1953853 0.1333 159 56 17648 YJR145C intron no 356 201 221 29.338151 289.057064 159.1976075 2.201936537 -0.030742 159 57 7371 snR68 snR68 yes 336 76 100 31.66886 300.148974 165.908917 2.219869728 -0.005911 159 58 358 Arg5 ArgTCT 3_flank no 272 174.046597 417.575538 295.8110675 2.471014419 0.094488 159 59 4117 SRP SRP yes 875 476 492 38.270469 292.026878 165.1486735 2.21787509 0.1645 159 60 11234 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3056 3073 38218.81741 20625.91849 29422.36795 4.468677622 0.035676 159 61 12660 MT_15S 15S yes 1848 1651 1673 31.566388 323.921363 177.7438755 2.249794645 -0.171407 159 62 18086 YLR344W intron/exon no 547 481 502 33.51305 297.81269 165.66287 2.219225181 0.061052 159 63 8131 snoRNA cluster 3; snR41 yes 743 166 181 39.655952 282.857344 161.256648 2.207517628 0.25718 159 64 8534 snR19 / U1 RNA U1 yes 868 166 182 35.168342 309.631085 172.3997135 2.23653654 -0.015162 159 65 9536 RUF3 RUF3 yes 631 66 86 31.817321 292.673969 162.245645 2.210173048 0.045406 159 66 1434 Leu2 LeuCAA_ii 5_flank no 314 34.805808 303.525204 169.165506 2.228311812 0.029769 159 67 5122 snR11 snR11 yes 458 211 228 38.918005 331.002971 184.960488 2.267078963 -0.182866 159 68 11577 "rRNA(18S,5.8S,25S)" 25S yes 7956 4771 4787 43.155269 299.368891 171.26208 2.233661214 0.107386 159 69 18879 YNR053C intron no 631 561 580 30.761677 303.935271 167.348474 2.223621757 -0.059341 159 70 19964 YBL059W spliced yes 40 13 29 35.121657 302.631751 168.876704 2.227569744 0.040794 159 71 1551 Leu4 LeuCAA_iv 5_flank no 314 33.179686 270.384081 151.7818835 2.181219938 0.235037 159 72 3594 Val1 ValAAC_i 5_flank no 274 31.174037 297.801377 164.487707 2.216133446 -0.007899 159 73 784 Glu1 GluCTC 5_flank no 272 31.219508 308.598035 169.9087715 2.2302158 -0.071946 159 74 13285 MT_COX1 exon5a yes 13084 8476 8494 31.221705 297.133292 164.1774985 2.215313634 -0.002168 159 75 13117 MT_COX1 ai3 no 13084 5956 5975 31.216251 298.43737 164.8268105 2.217027855 -0.010413 159 76 20290 YDR500C spliced yes 40 1 20 37.615918 331.707367 184.6616425 2.266376694 -0.192769 159 77 4267 telomerase RNA telomerase yes 1501 371 388 35.606198 291.638571 163.6223845 2.213842717 0.137911 159 78 21226 YOR234C spliced yes 40 1 17 42.263522 306.772497 174.5180095 2.241840251 0.037402 159 79 12054 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7156 7173 42.623979 295.946928 169.2854535 2.228619641 0.137373 159 80 866 Glu2 GluTTC_i 3_flank no 272 29.943867 284.78132 157.3625935 2.196901505 0.020855 159 81 3237 Thr1 ThrAGT tRNA yes 273 41 56 57.811228 310.113099 183.9621635 2.264728508 0.080394 159 82 19563 CBP1 2.2 CBP1 2.2 yes 401 361 378 41.473893 324.845513 183.159703 2.262829931 -0.122301 159 83 7571 snR189 5_flank no 389 30.461397 293.820176 162.1407865 2.209892275 -0.007267 159 84 17037 YGR183C intron no 313 181 198 32.575014 305.121683 168.8483485 2.227496817 -0.010623 159 85 12068 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7226 7245 30.127914 295.0159 162.571907 2.2110455 -0.026239 159 86 16326 YDR471W intron no 484 281 300 29.775456 300.246172 165.010814 2.217512407 -0.070883 159 87 928 Glu3 GluTTC_ii 3_flank no 272 37.912776 296.353762 167.133269 2.223062908 0.12284 159 88 20601 YHR041C spliced yes 40 17 33 39.459015 303.97444 171.7167275 2.234812603 0.055549 159 89 11466 "rRNA(18S,5.8S,25S)" 25S yes 7956 4216 4234 10086.6667 14066.24386 12076.45528 4.081939477 -0.957682 159 90 21214 YOR122C spliced yes 40 1 17 30.147809 294.720478 162.4341435 2.210677323 -0.023705 159 91 10832 "rRNA(18S,5.8S,25S)" 18S yes 7956 1046 1066 1083.688314 1836.819251 1460.253783 3.16442834 -0.400188 159 92 9900 RUF5-1 RUF5-1 yes 975 306 322 33.520194 309.585154 171.552674 2.234397492 -0.03467 159 93 2146 Met1 MetCAT_i 3_flank no 273 40.303076 306.506536 173.404806 2.23906113 0.034303 159 94 16604 YFL034C 5_exon no 214 21 36 65.270709 276.926125 171.098417 2.233245991 0.409406 159 95 11684 "rRNA(18S,5.8S,25S)" 25S yes 7956 5306 5323 82.342378 323.628143 202.9852605 2.307464503 0.120932 159 96 19133 YPL075W intron no 851 181 200 35.501132 286.617922 161.059527 2.206986419 0.179602 159 97 5091 snR11 snR11 yes 458 56 73 35.848239 298.673915 167.261077 2.223394889 0.081806 159 98 17723 YKL156W exon/intron no 450 41 58 30.152388 314.671768 172.412078 2.236567686 -0.144148 159 99 1677 Leu6 LeuGAG 5_flank no 282 28.51674 302.002116 165.259428 2.218166245 -0.133204 159 100 16594 YFL034C intron no 421 241 255 54.444295 297.145519 175.794907 2.245006289 0.173347 159 101 91 Ala2 AlaTGC 3_flank no 273 29.407069 286.507929 157.957499 2.198540249 -0.015301 159 102 3958 RNase MRP RNaseMRP yes 540 206 218 83.437471 319.180751 201.309111 2.303863431 0.160554 159 103 18500 YMR194W intron no 563 361 378 34.666428 290.849142 162.757785 2.211541771 0.133534 159 104 10595 RUF8 RUF8 yes 1151 901 913 37.344827 258.245838 147.7953325 2.169660719 0.443091 160 2 3234 Thr1 ThrAGT tRNA yes 273 26 42 31.60111 319.528505 175.5648075 2.244437465 -0.137208 160 3 7733 snoRNA cluster1 intergenic no 1574 461 482 32.52049 303.255322 167.887906 2.225019412 0.002842 160 4 1224 Ile1 IleAAT 3_flank no 274 35.499501 290.604374 163.0519375 2.212325964 0.145447 160 5 20656 YIL018W spliced yes 40 9 26 78.69047 353.595906 216.143188 2.334741553 -0.111333 160 6 13628 MT_ATP6 ATP6 yes 980 226 248 32.782197 295.60291 164.1925535 2.215353457 0.058268 160 7 743 Gln4 GlnTTG_iii 5_flank/tRNA no 272 30.402673 317.071396 173.7370345 2.239892404 -0.149503 160 8 21686 copy of SH10241 no 1251 30.116794 285.696351 157.9065725 2.198400207 0.02553 160 9 4591 U3b (snR17b) 3_flank no 662 50.183271 320.627114 185.4051925 2.268121893 -0.047443 160 10 4758 snR5 5_flank no 404 31.583297 272.521822 152.0525595 2.181993735 0.162272 160 11 17212 YHR039C intron no 262 181 197 36.263847 299.425844 167.8448455 2.224908009 0.080365 160 12 8751 LSR1 / U2 RNA U2 yes 1375 396 410 36.872332 306.561279 171.7168055 2.234812801 0.025681 160 13 14821 MT_Lys; Arg1; Gly intergenic/tRNAGly no 682 496 518 28.662432 332.530318 180.596375 2.256709029 -0.2987 160 14 21056 YMR194W spliced yes 40 1 18 242.799356 508.224993 375.5121745 2.574624022 0.011283 160 15 18169 YLR448W intron no 484 161 180 41.47769 331.820628 186.649159 2.271026037 -0.180562 160 16 4567 U3b (snR17b) U3b yes 662 391 405 54.681134 311.084964 182.883049 2.262173454 0.055775 160 17 3522 Tyr1 TyrGTA_i 3_flank no 289 29.888354 282.652973 156.2706635 2.193877456 0.027961 160 18 18770 YNL246W intron no 195 121 135 37.770634 295.582691 166.6766625 2.221874796 0.129147 160 19 11771 "rRNA(18S,5.8S,25S)" 25S yes 7956 5741 5754 104.995293 418.023359 261.509326 2.417487181 -0.309212 160 20 12417 5S rRNA NTS2 no 1420 1041 1060 30.936485 299.290367 165.113426 2.217782389 -0.025069 160 21 6369 snR43 snR43 yes 409 86 103 33.448845 286.120436 159.7846405 2.20353503 0.13932 160 22 8386 snoRNA cluster 5 5_flank/snR190 no 586 96 110 47.228294 313.199622 180.213958 2.255788425 -0.000477 160 23 14455 MT_21S 21S_rRNA3 yes 4639 1036 1060 30.313629 320.628328 175.4709785 2.244205298 -0.173106 160 24 10980 "rRNA(18S,5.8S,25S)" 18S yes 7956 1786 1804 26223.96112 24548.21871 25386.08991 4.404595814 -0.71486 160 25 14810 MT_Lys; Arg1; Gly intergenic/tRNAArg1 no 682 331 353 32.991546 323.912766 178.452156 2.251521799 -0.153057 160 26 19744 Negative Control no 60 NA #VALUE! 37.424115 292.584978 165.0045465 2.217495911 0.150522 160 27 17376 YIL052C intron no 572 421 438 31.241558 290.210795 160.7261765 2.206086613 0.041898 160 28 3691 Val3 ValCAC 5_flank no 273 38.830823 317.323701 178.077262 2.25060847 -0.066003 160 29 18883 YOL047C 5_exon no 163 21 35 44.341969 295.542047 169.942008 2.230300745 0.146539 160 30 9831 RUF5-1 5_flank no 975 53.135647 329.579181 191.357414 2.281845293 -0.102228 160 31 9872 RUF5-1 RUF5-1 yes 975 166 181 38.164559 292.425329 165.294944 2.21825957 0.159983 160 32 17964 YLR185W intron no 459 261 278 31.781766 296.687383 164.2345745 2.21546459 0.019162 160 33 16747 YGL076C intron no 559 361 377 38.303947 283.926281 161.115114 2.207136283 0.234384 160 34 18962 YOL127W intron no 514 421 440 31.822847 298.946834 165.3848405 2.218495699 0.006543 160 35 20631 YHR123W spliced yes 40 17 36 42.604755 338.132431 190.368593 2.2795953 -0.22798 160 36 6643 snR48 snR48 yes 313 41 57 33.932067 305.006132 169.4690995 2.229090522 0.007213 160 37 9729 RUF4 RUF4 yes 988 421 435 42.586267 299.094336 170.8403015 2.232590329 0.108013 160 38 17310 YHR203C intron no 369 181 200 29.681479 294.198912 161.9401955 2.209354659 -0.036722 160 39 17613 YJR021C exon/intron no 180 41 55 31.93613 291.40941 161.67277 2.208636879 0.057271 160 40 8975 snR17a / U3a U3a yes 690 161 178 36.402299 297.844427 167.123363 2.223037166 0.09503 160 41 16091 YDR025W intron no 439 361 379 32.148069 298.937217 165.542643 2.218909885 0.01722 160 42 7548 snR79 snR79/3_flank no 284 30.014427 317.556989 173.785708 2.240014058 -0.165742 160 43 21905 copy of SH19400 no 186 32.180243 300.589698 166.3849705 2.221114094 0.008115 160 44 9125 snR14 / U4 RNA 3_flank no 360 36.459613 303.264385 169.861999 2.230096231 0.051114 160 45 4173 telomerase RNA 5_flank no 1501 31.971598 304.84662 168.409109 2.226365578 -0.024569 160 46 21741 copy of SH12551 no 1848 31.808026 320.902234 176.35513 2.246388097 -0.145108 160 47 16479 YER102W intron no 460 221 235 46.685582 332.271765 189.4786735 2.277560336 -0.15936 160 48 7428 snR69 snR69 yes 301 41 53 72.232536 318.348873 195.2907045 2.290681572 0.098295 160 49 566 Cys1 CysGCA 3_flank no 272 31.220366 294.110985 162.6656755 2.211295921 0.016611 160 50 115 Arg1 ArgACG_i 5_flank no 273 31.037589 297.568417 164.303003 2.215645501 -0.011038 160 51 7392 snR68 3_flank no 336 43.518861 312.619936 178.0693985 2.250589292 -0.010221 160 52 21179 YNR053C spliced yes 40 17 29 39.240438 293.127378 166.183908 2.220588968 0.156568 160 53 19626 RNA14 2.2 RNA14 2.2 yes 401 21 41 45.620689 348.159114 196.8899015 2.294223442 -0.288322 160 54 1603 Leu4 LeuCAA_iv 3_flank no 314 35.246201 307.68618 171.4661905 2.234178499 0.001326 160 55 7203 snR64 snR64 yes 301 81 93 33.336942 288.515755 160.9263485 2.206627157 0.120471 160 56 20384 YFL034C-B spliced yes 40 1 18 31.405987 287.194366 159.3001765 2.202216257 0.066617 160 57 9033 snR17a / U3a U3a yes 690 451 465 76.923642 346.024721 211.4741815 2.325257353 -0.072707 160 58 560 Cys1 CysGCA 3_flank no 272 33.762068 279.785213 156.7736405 2.195273043 0.190278 160 59 512 Asp2 AspGTC_ii 3_flank no 272 36.972047 298.875653 167.92385 2.225112383 0.092919 160 60 5967 snR36 snR36 yes 555 291 308 33.661714 306.893451 170.2775825 2.231157476 -0.011344 160 61 11816 "rRNA(18S,5.8S,25S)" 25S yes 7956 5966 5979 106.966237 384.894956 245.9305965 2.390812563 -0.115312 160 62 6740 snR49 3_flank no 365 33.356221 310.239958 171.7980895 2.23501833 -0.041922 160 63 14548 MT_21S 21S_rRNA3 yes 4639 2431 2457 33.168186 337.930739 185.5494625 2.268459701 -0.256195 160 64 14959 MT_Met 3_flank no 276 256 268 35.076503 285.326941 160.201722 2.20466718 0.185776 160 65 13049 MT_COX1 ai2 no 13084 4936 4955 30.719517 312.896002 171.8077595 2.235042774 -0.114271 160 66 993 Gly2 GlyCCC_ii 5_flank no 272 30.606635 297.24748 163.9270575 2.214650643 -0.023652 160 67 2141 Met1 MetCAT_i 3_flank no 273 32.642266 286.92619 159.784228 2.203533909 0.108654 160 68 13480 MT_COX1 intronic no 13084 11401 11425 30.611227 294.15712 162.3841735 2.210543699 -0.004253 160 69 16459 YER074W 3_exon no 202 181 197 32.816201 293.825158 163.3206795 2.213041178 0.070457 160 70 7702 snoRNA cluster1 intergenic no 1574 306 324 32.989813 307.151833 170.070823 2.230629813 -0.021772 160 71 4145 SRP SRP yes 875 616 628 124.52576 384.990055 254.7579075 2.406127673 -0.006801 160 72 9470 RUF2 RUF2 yes 468 191 205 37.563589 308.153095 172.858342 2.237690343 0.012906 160 73 12482 5S rRNA 5S/NTS1 no 1420 1366 1390 39.814713 293.036727 166.42572 2.221220444 0.158759 160 74 2823 Pro7 ProTGG_vi 5_flank no 303 31.364508 312.849833 172.1071705 2.235798965 -0.092301 160 75 21896 copy of SH19001 no 309 31.414663 301.548732 166.4816975 2.221366495 -0.022893 160 76 16033 YDL191W intron no 591 121 135 42.190421 293.419516 167.8049685 2.224804816 0.160404 160 77 14945 MT_Met 5_flank no 276 46 68 29.455252 328.53392 178.994586 2.252839895 -0.247947 160 78 17513 YJL136C intron no 560 221 240 31.772188 298.559524 165.165856 2.217920273 0.007266 160 79 5707 snR34 snR34 yes 750 456 477 27.664226 324.845179 176.2547025 2.246140713 -0.292664 160 80 7481 snR71 snR71 yes 290 21 36 63.050454 308.388667 185.7195605 2.268857647 0.123939 160 81 3345 Thr3 ThrTGT_i tRNA/3_flank no 272 30.262843 309.34287 169.8028565 2.229944992 -0.108883 160 82 5452 snR32 5_flank no 388 30.387016 322.104199 176.2456075 2.246118302 -0.179036 160 83 16485 YER102W intron no 460 341 356 37.03148 290.849281 163.9403805 2.214685939 0.160859 160 84 3209 Thr1 ThrAGT 5_flank no 273 36.885293 329.647052 183.2661725 2.26308231 -0.177151 160 85 4354 telomerase RNA telomerase yes 1501 806 824 32.219751 302.572207 167.395979 2.223745022 -0.002708 160 86 7632 snR189 3_flank no 389 34.031071 293.321607 163.676339 2.213985902 0.104955 160 87 6191 snR40 snR40 yes 297 16 30 44.308922 311.604504 177.956713 2.250314375 0.001265 160 88 19317 YPL198W intron no 509 401 420 31.034293 296.496142 163.7652175 2.214221666 -0.004503 160 89 9126 snR7 U5 RNA 5_flank no 415 38.943836 320.265384 179.60461 2.25431748 -0.09152 160 90 4333 telomerase RNA telomerase yes 1501 701 720 30.222012 312.343463 171.2827375 2.233713595 -0.128066 160 91 11510 "rRNA(18S,5.8S,25S)" 25S yes 7956 4436 4454 23498.51158 17951.47244 20724.99201 4.316494372 -0.32947 160 92 21698 copy of SH10663 no 7956 35.623483 323.852547 179.738015 2.254639941 -0.130778 160 93 17906 YLR061W intron no 489 181 196 35.387527 296.709584 166.0485555 2.220235102 0.092758 160 94 7440 snR69 snR69/3_flank no 301 31.294006 296.559612 163.926809 2.214649985 0.003805 160 95 13202 MT_COX1 exon4 yes 13084 7231 7247 43.310002 279.301342 161.305672 2.207649639 0.300577 160 96 1217 Ile1 IleAAT tRNA yes 274 45 57 80.803365 300.726285 190.764825 2.280498298 0.287813 160 97 1726 Leu7 LeuTAA 5_flank no 284 29.706894 301.266506 165.4867 2.218763096 -0.079537 160 98 8004 snoRNA cluster 2 intergenic no 739 256 275 31.052035 299.082621 165.067328 2.217661121 -0.019898 160 99 4294 telomerase RNA telomerase yes 1501 506 522 30.421995 295.881618 163.1518065 2.212591887 -0.021491 160 100 2011 Lys3 LysTTT_i tRNA yes 296 1 17 39.264729 311.913232 175.5889805 2.244497257 -0.016937 160 101 13333 MT_COX1 ai5a no 13084 9196 9212 94.136622 343.268347 218.7024845 2.339853717 0.058718 160 102 15194 MT_COX3 cox3 no 1010 331 348 31.733722 308.563498 170.14861 2.230828406 -0.054681 160 103 16546 YER133W intron no 625 81 97 36.545497 317.551838 177.0486675 2.248092663 -0.073549 160 104 17715 YKL081W intron no 426 301 323 30.256996 300.463361 165.3601785 2.218430932 -0.055462 161 2 13946 MT_COB bi3 no 7308 3376 3402 31.414579 318.458846 174.9367125 2.242880961 -0.131372 161 3 11272 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3246 3264 31.271786 301.181736 166.226761 2.220700943 -0.025411 161 4 8311 snoRNA cluster4 intergenic no 638 341 360 33.193716 295.698594 164.446155 2.216023723 0.070699 161 5 9064 snR14 / U4 RNA 5_flank no 360 30.829228 293.858682 162.343955 2.210436122 0.005026 161 6 6938 snR58 snR58 yes 296 51 67 38.871435 298.836479 168.853957 2.227511243 0.10181 161 7 12192 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7846 7859 57.125603 315.737881 186.431742 2.270519858 0.030322 161 8 18932 YOL121C intron no 490 301 318 29.974922 286.4924 158.233661 2.199298876 0.014488 161 9 16185 YDR367W intron no 201 81 98 29.705368 300.182976 164.944172 2.217336975 -0.072956 161 10 17365 YIL052C intron no 572 201 216 43.481515 346.627985 195.05475 2.290156531 -0.288482 161 11 19530 CBP1 1.2 CBP1 1.2 yes 401 101 120 29.198257 308.869819 169.034038 2.227974166 -0.143461 161 12 12015 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6961 6986 28.93742 309.613181 169.2753005 2.228593593 -0.157257 161 13 8928 snR17a / U3a 5_flank no 690 34.513631 307.623888 171.0687595 2.233170706 -0.00687 161 14 21182 YOL047C spliced yes 40 5 21 30.348505 302.315834 166.3321695 2.220976252 -0.063625 161 15 2590 Pro3 ProTGG_ii 5_flank no 303 30.146705 295.991548 163.0691265 2.212371745 -0.031667 161 16 12668 MT_15S 3_flank no 1848 1771 1795 26.243157 299.330746 162.7869515 2.21161959 -0.250469 161 17 16121 YDR064W intron no 639 341 358 33.971897 299.835847 166.903872 2.222466412 0.049951 161 18 18516 YMR201C intron/exon no 184 121 135 63.454642 347.456545 205.4555935 2.312717969 -0.171791 161 19 21422 Trp1 spliced yes 40 9 25 30.769851 279.607328 155.1885895 2.190859786 0.08755 161 20 17202 YHR021C 3_exon no 650 621 633 115.541983 379.674145 247.608064 2.393764785 -0.03194 161 21 7273 snR65 3_flank no 300 29.779987 309.216663 169.498325 2.229165411 -0.124927 161 22 7643 snoRNA cluster1 5_flank no 1574 11 29 28.206327 287.962194 158.0842605 2.198888632 -0.086818 161 23 738 Gln4 GlnTTG_iii 5_flank no 272 30.667454 310.703916 170.685685 2.232197099 -0.103098 161 24 17874 YLR048W 5_exon no 459 1 16 35.197028 280.9284 158.062714 2.198829435 0.225591 161 25 15818 YDL064W 5_exon no 210 1 18 34.40284 320.724382 177.563611 2.249353968 -0.111267 161 26 5755 snR35 5_flank no 740 51.71096 313.274893 182.4929265 2.261246036 0.021159 161 27 16919 YGL251C intron no 252 141 157 33.656172 297.946369 165.8012705 2.219587854 0.061707 161 28 17566 YJL189W intron no 486 321 336 35.918156 320.2583 178.088228 2.250635213 -0.098843 161 29 11567 "rRNA(18S,5.8S,25S)" 25S yes 7956 4721 4734 127.143566 410.320429 268.7319975 2.42931938 -0.126626 161 30 21582 copy of SH5871 no 740 33.990937 297.085182 165.5380595 2.21889786 0.072959 161 31 7493 snR71 snR71/3_flank no 290 31.929054 308.148213 170.0386335 2.230547606 -0.045793 161 32 15059 MT_COX 2; ORF1 ORF1exon1 yes 2427 1486 1508 29.836778 303.140519 166.4886485 2.221384628 -0.086398 161 33 20154 YDL125C spliced yes 40 13 32 32.046685 316.257461 174.152073 2.240928648 -0.105981 161 34 12083 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7301 7319 36.399163 304.443707 170.421435 2.231524218 0.040835 161 35 1898 Lys1 LysCTT_i 5_flank no 272 34.197034 274.557738 154.377386 2.188583683 0.23837 161 36 4842 snR8 5_flank/snR8 no 390 39.605352 309.035757 174.3205545 2.241348599 0.009747 161 37 15493 YBL092W intron no 433 241 255 53.791303 310.635003 182.213153 2.260579723 0.054654 161 38 3626 Val1 ValAAC_i 3_flank no 274 49.470927 333.367322 191.4191245 2.281985326 -0.153018 161 39 7981 snoRNA cluster 2 snR57 yes 739 141 158 49.570119 323.771569 186.670844 2.271076491 -0.076225 161 40 4782 snR5 snR5 yes 404 81 98 34.343582 310.954819 172.6492005 2.237164572 -0.035531 161 41 10436 RUF8 RUF8 yes 1151 106 125 30.022673 308.873506 169.4480895 2.229036677 -0.114408 161 42 13332 MT_COX1 ai5a no 13084 9181 9199 32.201591 321.400964 176.8012775 2.247485399 -0.143854 161 43 3448 Trp1 TrpCCA tRNA yes 306 39 53 99.811332 366.232847 233.0220895 2.367397092 -0.051479 161 44 10130 RUF6 RUF6 yes 1251 496 510 35.308803 314.444007 174.876405 2.242731217 -0.051631 161 45 473 Asp2 AspGTC_ii 5_flank no 272 43.867641 292.889712 168.3786765 2.226287092 0.169735 161 46 15501 YBL092W 3_exon no 433 401 417 33.956034 302.430461 168.1932475 2.225808556 0.028464 161 47 19797 Negative Control no 60 NA #VALUE! 33.817988 269.339296 151.578642 2.180638012 0.262063 161 48 4731 snR4 3_flank no 386 31.533468 295.159217 163.3463425 2.213109415 0.02048 161 49 13550 MT_COX1 intronic no 13084 12451 12467 35.649288 290.207652 162.92847 2.211996979 0.150567 161 50 6697 snR49 snR49 yes 365 11 27 33.360371 302.154887 167.757629 2.224682279 0.023389 161 51 59 Ala2 AlaTGC 5_flank no 273 31.114921 310.923381 171.019151 2.233044746 -0.089272 161 52 19494 YPT1 YPT1 yes 402 181 198 64.956648 342.377909 203.6672785 2.30892126 -0.12567 161 53 15141 MT_Thr1 5_flank no 272 46 74 31.035152 302.907957 166.9715545 2.22264249 -0.043865 161 54 10624 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 6 28 28.992061 303.459519 166.22579 2.220698406 -0.118325 161 55 15574 YBR084C intron no 606 241 257 33.327527 310.03336 171.6804435 2.234720827 -0.040632 161 56 10932 "rRNA(18S,5.8S,25S)" 18S yes 7956 1546 1563 33.447032 278.775074 156.111053 2.193433653 0.187148 161 57 7322 snR66 3_flank no 286 34.594679 281.958202 158.2764405 2.199416275 0.201473 161 58 16170 YDR139C intron/exon no 173 121 140 29.282281 312.061064 170.6716725 2.232161444 -0.159385 161 59 13000 MT_COX1 ai2 no 13084 4201 4220 31.369959 305.201157 168.285558 2.226046847 -0.046547 161 60 7840 snoRNA cluster1 snR74 yes 1574 996 1013 33.405969 293.588845 163.497407 2.213510869 0.090538 161 61 14523 MT_21S 21S_rRNA3 yes 4639 2056 2070 539.332766 668.116148 603.724457 2.78083877 0.398513 161 62 9312 RUF1 RUF1 yes 750 136 153 33.140118 306.421203 169.7806605 2.229888219 -0.014004 161 63 20783 YKL006W spliced yes 40 17 33 134.192686 473.521828 303.857257 2.482669613 -0.382838 161 64 12140 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7586 7604 28.669213 318.734248 173.7017305 2.239804145 -0.220437 161 65 17479 YJL001W intron/exon no 216 161 177 34.797349 292.265412 163.5313805 2.213601103 0.12309 161 66 1386 Leu1 LeuCAA_i tRNA yes 315 1 13 100.067164 343.122298 221.594731 2.34555943 0.096243 161 67 6148 snR39B snR39B yes 296 81 93 72.32865 310.821135 191.5748925 2.282338591 0.157869 161 68 14513 MT_21S 21S_rRNA3 yes 4639 1906 1922 108.343786 358.069628 233.206707 2.367741037 0.052031 161 69 20063 YBR230C spliced yes 40 1 18 32.787135 298.488837 165.637986 2.219159941 0.040538 161 70 9320 RUF1 RUF1 yes 750 176 193 32.960311 289.721123 161.340717 2.207743983 0.100931 161 71 17409 YIL106W 5_exon no 185 21 40 31.043324 290.067963 160.5556435 2.205625576 0.036158 161 72 2271 Phe2 PheGAA_ii 5_flank no 292 33.33087 308.895115 171.1129925 2.233282986 -0.0315 161 73 640 Gln2 GlnTTG_i 5_flank/tRNA no 272 39.885016 310.774684 175.32985 2.243855861 -0.005289 161 74 3302 Thr2 ThrCGT 3_flank no 272 31.476963 325.847915 178.662439 2.252033258 -0.187237 161 75 14370 MT_ORF9; ORF10 intergenic/ORF10 no 578 316 333 35.87576 297.512816 166.694288 2.221920718 0.09175 161 76 3654 Val2 ValAAC_ii tRNA yes 274 11 25 190.562478 416.361641 303.4620595 2.482104401 0.180093 161 77 18721 YNL130C 3_exon no 541 501 516 38.32979 279.251148 158.790469 2.200824431 0.275695 161 78 21040 YMR133W spliced yes 40 9 28 29.841018 315.343176 172.592097 2.237020905 -0.158912 161 79 6591 snR47 snR47 yes 299 61 79 324.736859 446.450626 385.5937425 2.586129977 0.544589 161 80 11325 "rRNA(18S,5.8S,25S)" 25S yes 7956 3511 3524 9863.487111 7229.084048 8546.28558 3.931777401 0.123826 161 81 20097 YDL029W spliced yes 40 13 29 32.540915 275.929869 154.235392 2.188184042 0.177356 161 82 7725 snoRNA cluster1 intergenic no 1574 421 441 30.38821 315.932172 173.160191 2.238448056 -0.143373 161 83 19692 Negative Control no 60 NA #VALUE! 36.957206 280.300554 158.62888 2.200382258 0.251326 161 84 16053 YDL191W intron/exon no 591 521 542 32.365063 289.944301 161.154682 2.207242928 0.080482 161 85 804 Glu1 GluCTC tRNA yes 272 36 48 438.265041 586.650896 512.4579685 2.709658251 0.38312 161 86 20080 YCR031C spliced yes 40 21 36 31.75631 282.831618 157.293964 2.196712057 0.106384 161 87 5032 snR10 snR10 yes 445 191 205 35.65384 293.531185 164.5925125 2.216410075 0.122478 161 88 2578 Pro2 ProTGG_i 3_flank no 303 28.914647 290.489239 159.701943 2.2033102 -0.059916 161 89 12823 MT_COX1 ai1 no 13084 1546 1565 30.656946 308.565065 169.6110055 2.229454029 -0.090737 161 90 17702 YKL081W exon/intron no 426 41 60 30.314807 285.226091 157.770449 2.198025661 0.037906 161 91 9883 RUF5-1 RUF5-1 yes 975 221 235 48.407139 306.881828 177.6444835 2.249551726 0.059372 161 92 7468 snR71 5_flank no 290 31.758145 322.910571 177.334358 2.248792887 -0.161176 161 93 8327 snoRNA cluster4 intergenic no 638 421 437 65.907426 343.286927 204.5971765 2.310899636 -0.126118 161 94 2635 Pro3 ProTGG_ii 3_flank no 303 29.43835 315.032887 172.2356185 2.236122969 -0.171286 161 95 19527 CBP1 1.2 CBP1 1.2 yes 401 41 58 31.42869 276.328451 153.8785705 2.187178143 0.136175 161 96 12367 5S rRNA NTS2 no 1420 791 807 35.54419 292.196586 163.870388 2.214500482 0.132465 161 97 231 Arg3 ArgCCG tRNA yes 272 11 27 31.728937 290.074043 160.90149 2.206560066 0.05893 161 98 15864 YDL079C intron no 392 201 223 27.946961 318.90349 173.4252255 2.239112268 -0.248058 161 99 9640 RUF4 5_flank no 988 44.795819 285.294989 165.045404 2.217603435 0.244782 161 100 4827 snR8 5_flank no 390 49.590259 307.709821 178.65004 2.252003118 0.05819 161 101 20621 YHR101C spliced yes 40 1 20 31.108822 318.899542 175.004182 2.243048427 -0.138839 161 102 9301 RUF1 RUF1 yes 750 81 97 37.97323 295.286253 166.6297415 2.221752521 0.133068 161 103 19830 Negative Control no 60 NA #VALUE! 36.252569 281.897609 159.075089 2.201602175 0.229314 161 104 1014 Gly2 GlyCCC_ii tRNA/3_flank no 272 61 73 29.98791 238.793686 134.390798 2.128369533 0.241928 162 2 8067 snoRNA cluster 2 snR61 yes 739 571 587 39.70189 288.361033 164.0314615 2.214927154 0.203442 162 3 6763 snR50 5_flank/snR50 no 290 35.236919 313.252858 174.2448885 2.241160047 -0.043095 162 4 15250 MT_fMet 3_flank no 274 181 207 28.716205 305.961633 167.338919 2.223596959 -0.143427 162 5 19422 YPR132W intron no 465 161 178 35.793845 317.490223 176.642034 2.247094057 -0.074904 162 6 6375 snR43 snR43 yes 409 116 128 46.864305 291.261232 169.0627685 2.228047977 0.19444 162 7 13589 MT_COX1 3_flank no 13084 13036 13062 27.998998 294.394135 161.1965665 2.207355787 -0.127697 162 8 4735 snR4 3_flank no 386 37.84415 298.408378 168.126264 2.225635562 0.10337 162 9 8505 snR19 / U1 RNA U1 yes 868 21 40 27.487724 282.317767 154.9027455 2.190059115 -0.100555 162 10 3807 RNaseP RNaseP yes 569 1 17 49.171446 337.437263 193.3043545 2.286241637 -0.186232 162 11 16580 YER179W intron/exon no 192 141 157 29.012338 276.671495 152.8419165 2.184242475 0.010222 162 12 12471 5S rRNA 5S yes 1420 1311 1323 230.191539 466.825522 348.5085305 2.542213413 0.125441 162 13 5761 snR35 5_flank/snR35 no 740 32.462076 285.793437 159.1277565 2.20174594 0.110156 162 14 16875 YGL187C intron no 442 361 378 30.322647 276.478942 153.4007945 2.185827609 0.079785 162 15 18234 YML026C intron no 501 281 300 28.271542 314.431032 171.351287 2.233887371 -0.209996 162 16 9047 snR17a / U3a 3_flank no 690 28.249877 267.554983 147.90243 2.169975309 0.009392 162 17 2426 Phe5 PheGAA_v 5_flank no 291 30.288901 257.417284 143.8530925 2.157919203 0.17318 162 18 5574 snR33 snR33 yes 383 156 174 48.143727 334.944132 191.5439295 2.282268393 -0.172952 162 19 18246 YML034W 5_exon no 226 21 38 34.940841 282.96431 158.9525755 2.201267569 0.204721 162 20 1260 Ile2 IleTAT_i 5_flank/tRNA no 333 32.520608 294.467027 163.4938175 2.213501335 0.056991 162 21 16295 YDR450W intron no 535 181 195 30.038597 307.664788 168.8516925 2.227505418 -0.106635 162 22 16480 YER102W intron no 460 241 260 30.534499 306.448235 168.491367 2.226577654 -0.082242 162 23 12562 MT_15S 15S yes 1848 181 203 28.855496 311.597812 170.226654 2.231027563 -0.171982 162 24 4581 U3b (snR17b) U3b/3_flank no 662 33.399622 335.869622 184.634622 2.266313142 -0.238466 162 25 16911 YGL232W 3_exon no 158 141 158 31.505736 288.78707 160.146403 2.204517189 0.059746 162 26 16450 YER074W 5_exon no 202 1 18 31.663114 300.272232 165.967673 2.220023505 -0.006857 162 27 3571 Tyr2 TyrGTA_ii 3_flank no 289 33.93317 297.003945 165.4685575 2.218715481 0.07293 162 28 2471 Phe5 PheGAA_v 3_flank no 291 34.034866 295.162369 164.5986175 2.216426183 0.089541 162 29 18964 YOL127W intron/exon no 514 461 477 34.135067 309.075937 171.605502 2.234531208 -0.023075 162 30 4736 snR4 3_flank no 386 34.239051 286.890106 160.5645785 2.205649744 0.158756 162 31 10670 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 236 253 38.709633 306.207234 172.4584335 2.236684437 0.03335 162 32 3188 Ser5 SerTGA tRNA yes 282 52 67 144.19359 420.179542 282.186566 2.450536335 -0.07667 162 33 17241 YHR079C intron no 186 101 122 34.46134 299.254972 166.858156 2.22234744 0.060666 162 34 17185 YHR021C intron no 650 281 300 34.463928 332.067403 183.2656655 2.263081108 -0.203791 162 35 7843 snoRNA cluster1 snR74 yes 1574 1011 1028 41.013245 305.533655 173.27345 2.238732023 0.044781 162 36 2113 Met1 MetCAT_i 5_flank no 273 34.402641 274.354237 154.378439 2.188586645 0.245995 162 37 14318 MT_VAR1 VAR1 yes 1467 976 1004 31.108275 309.742014 170.4251445 2.231533671 -0.082486 162 38 11488 "rRNA(18S,5.8S,25S)" 25S yes 7956 4326 4343 32.20675 313.688669 172.9477095 2.237914815 -0.083762 162 39 17251 YHR097C intron no 224 121 138 32.230798 258.8973 145.564049 2.163054127 0.262099 162 40 9502 RUF2 3_flank no 468 32.249801 296.469883 164.359842 2.215795715 0.035778 162 41 19163 YPL075W intron no 851 781 797 34.427033 316.386188 175.4066105 2.244045956 -0.07732 162 42 9096 snR14 / U4 RNA U4 yes 360 96 112 34.370461 298.7166 166.5435305 2.221527767 0.064022 162 43 3146 Ser4 SerGCT 3_flank no 301 29.920273 305.900918 167.9105955 2.225078102 -0.10017 162 44 3782 Val4 ValTAC 3_flank no 274 31.988079 282.212238 157.1001585 2.196176623 0.118014 162 45 9170 snR7 U5 RNA U5 yes 415 121 137 40.556166 274.196005 157.3760855 2.196938739 0.34422 162 46 396 Asn1 AsnGTT tRNA yes 274 60 72 112.589001 360.499362 236.5441815 2.37391227 0.063771 162 47 10701 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 391 408 38.210699 291.023331 164.617015 2.216474722 0.172361 162 48 6770 snR50 snR50 yes 290 26 42 35.975893 313.606514 174.7912035 2.242519573 -0.040052 162 49 7508 snR71 3_flank no 290 33.729935 302.266419 167.998177 2.225304569 0.027038 162 50 5952 snR36 snR36 yes 555 216 232 33.607742 306.126895 169.8673185 2.230109831 -0.005828 162 51 6540 snR46 snR46/3_flank no 397 30.285227 275.87391 153.0795685 2.184917229 0.080783 162 52 7358 snR68 snR68 yes 336 11 28 31.240848 296.962589 164.1017185 2.215113129 -0.00047 162 53 21117 YNL096C spliced yes 40 21 36 31.177842 296.415148 163.796495 2.214304604 0.000819 162 54 16000 YDL137W intron no 432 81 95 50.27398 276.826778 163.550379 2.213651555 0.343864 162 55 20991 YML073C spliced yes 40 5 21 41.799258 322.598968 182.199113 2.260546258 -0.102152 162 56 9428 RUF2 5_flank/RUF2 no 468 35.466759 337.95552 186.7111395 2.271170229 -0.250281 162 57 11454 "rRNA(18S,5.8S,25S)" 25S yes 7956 4156 4171 25945.41527 17047.33627 21496.37577 4.332365245 -0.122364 162 58 10335 RUF7 RUF7 yes 700 286 302 37.564117 296.570437 167.067277 2.222891394 0.118632 162 59 21939 copy of SH2 no 273 52.35808 305.360407 178.8592435 2.25251139 0.091762 162 60 20342 YER093C-A spliced yes 40 9 26 39.4709 307.965929 173.7184145 2.239845857 0.019126 162 61 6603 snR47 3_flank no 299 33.018175 287.066039 160.042107 2.20423426 0.119713 162 62 6441 snR45 snR45 yes 372 51 68 28.718336 283.476096 156.097216 2.193395157 -0.037958 162 63 19721 Negative Control no 60 NA #VALUE! 36.960894 279.176103 158.0684985 2.198845328 0.261301 162 64 7084 snR63 5_flank no 455 34.762561 277.440149 156.101355 2.193406673 0.236269 162 65 21069 YMR225C spliced yes 40 5 17 34.675886 269.752312 152.214099 2.182454881 0.285401 162 66 4393 telomerase RNA telomerase yes 1501 1001 1022 30.487303 285.959588 158.2234455 2.199270838 0.043302 162 67 3840 RNaseP RNaseP yes 569 166 182 192.614733 475.503637 334.059185 2.523823417 -0.07446 162 68 6626 snR48 5_flank no 313 36.790093 282.870368 159.8302305 2.203658926 0.226895 162 69 14743 MT_ORF11; Leu; Gln 5_flank no 716 31 43 36.933904 298.104557 167.5192305 2.224064669 0.098876 162 70 9085 snR14 / U4 RNA U4 yes 360 41 58 32.933531 282.05134 157.4924355 2.197259699 0.14948 162 71 18935 YOL121C intron no 490 361 382 29.970478 310.057537 170.0140075 2.230484704 -0.123269 162 72 11725 "rRNA(18S,5.8S,25S)" 25S yes 7956 5511 5526 52.484164 303.704638 178.094401 2.250650266 0.106705 162 73 16403 YER056C intron no 497 121 135 381.613279 791.714511 586.663895 2.768389361 -0.296477 162 74 4529 U3b (snR17b) U3b yes 662 201 217 75.876216 329.432077 202.6541465 2.306755494 0.038501 162 75 2171 Met2 MetCAT_ii 5_flank/tRNA no 272 36.017736 298.202275 167.1100055 2.223002454 0.087665 162 76 16358 YEL012W 5_exon no 223 1 21 31.868607 312.344983 172.106795 2.235798017 -0.077524 162 77 445 Asp1 AspGTC_i tRNA yes 271 46 61 38.568085 281.066159 159.817122 2.203623306 0.262251 162 78 15558 YBR082C intron no 195 101 120 32.214813 295.175344 163.6950785 2.214035623 0.042702 162 79 12290 5S rRNA NTS2 no 1420 406 423 34.589049 287.844436 161.2167425 2.207410142 0.158272 162 80 17812 YKR057W intron no 422 101 117 39.167616 337.069353 188.1184845 2.274431471 -0.231772 162 81 16375 YER003C intron no 193 121 135 30.406392 260.252117 145.3292545 2.162353046 0.164611 162 82 979 Gly1 GlyCCC_i 3_flank no 272 30.391333 310.359142 170.3752375 2.231406474 -0.110498 162 83 18725 YNL147W exon/intron no 220 41 55 39.091087 282.468197 160.779642 2.206231057 0.255531 162 84 17085 YHL001W intron no 498 81 97 47.608603 340.337113 193.972858 2.287740965 -0.217862 162 85 1768 Leu7 LeuTAA 3_flank no 284 29.781052 309.358724 169.569888 2.229348733 -0.125735 162 86 9812 RUF4 3_flank no 988 33.759423 289.707165 161.733294 2.208799432 0.126034 162 87 15438 YBL072C intron no 408 321 339 31.279869 290.469987 160.874928 2.206488366 0.041534 162 88 1800 Leu8 LeuTAG_i tRNA/intron no 301 25 i3 76.558434 365.602004 221.080219 2.344549886 -0.204478 162 89 7541 snR79 snR79 yes 284 46 62 30.671528 286.931701 158.8016145 2.200854913 0.043591 162 90 13168 MT_COX1 intronic no 13084 6721 6741 28.336018 302.840968 165.588493 2.219030154 -0.146775 162 91 13938 MT_COB bi3 no 7308 3256 3278 28.098043 297.658843 162.878443 2.211863609 -0.136896 162 92 11941 "rRNA(18S,5.8S,25S)" 25S yes 7956 6591 6608 58.50719 312.961731 185.7344605 2.268892489 0.060274 162 93 13304 MT_COX1 ai5a no 13084 8761 8777 33.769997 305.485349 169.627673 2.229496704 0.001351 162 94 10471 RUF8 RUF8 yes 1151 281 298 29.613563 306.185503 167.899533 2.225049488 -0.112642 162 95 2179 Met2 MetCAT_ii tRNA yes 272 26 40 57.848519 288.188613 173.018566 2.238092708 0.270389 162 96 9611 RUF3 3_flank no 631 31.63573 293.631826 162.633778 2.211210751 0.033414 162 97 11281 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3291 3309 60.282393 314.373691 187.328042 2.272602794 0.059315 162 98 9149 snR7 U5 RNA U5 yes 415 16 30 1187.051917 1433.835279 1310.443598 3.117418333 0.110551 162 99 15369 YBL027W intron no 484 141 160 46.812792 326.225084 186.518938 2.270722934 -0.11021 162 100 12146 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7616 7634 45.262715 315.37981 180.3212625 2.256046939 -0.028735 162 101 3233 Thr1 ThrAGT tRNA yes 273 21 33 37.3349 326.167564 181.751232 2.259477363 -0.146396 162 102 16047 YDL191W intron no 591 401 422 29.213182 339.910796 184.561989 2.266142262 -0.32256 162 103 4521 U3b (snR17b) U3b yes 662 161 177 33.851698 278.748409 156.3000535 2.193959127 0.199882 162 104 17769 YKL180W exon/intron no 406 41 57 76.957316 310.378177 193.6677465 2.287057299 0.188304 163 2 13466 MT_COX1 intronic no 13084 11191 11215 30.746927 311.187891 170.967409 2.23291333 -0.103261 163 3 306 Arg4 ArgCCT 3_flank no 272 32.74214 300.402749 166.5724445 2.221603159 0.027336 163 4 403 Asn1 AsnGTT 3_flank no 274 30.489034 298.515192 164.502113 2.216171481 -0.035508 163 5 8981 snR17a / U3a U3a yes 690 191 207 30.280547 287.110723 158.695635 2.200564981 0.027379 163 6 19196 YPL081W intron no 601 81 105 27.992829 299.067092 163.5299605 2.213597332 -0.14901 163 7 18275 YML056C intron no 508 381 393 86.558974 341.536317 214.0476455 2.330510455 0.021533 163 8 19314 YPL198W intron no 509 341 355 47.558991 312.506881 180.032936 2.255351964 0.007082 163 9 8966 snR17a / U3a U3a yes 690 116 138 27.235363 285.896049 156.565706 2.194696641 -0.131658 163 10 15410 YBL059C intron no 185 101 120 28.977197 275.231771 152.104484 2.182142017 0.015286 163 11 20100 YDL029W spliced yes 40 25 39 44.437688 304.149917 174.2938025 2.241281945 0.068097 163 12 4907 snR9 5_flank no 387 30.511862 263.027594 146.769728 2.166636489 0.155865 163 13 8552 snR19 / U1 RNA U1 yes 868 256 270 41.942697 333.987629 187.965163 2.274077366 -0.196829 163 14 14189 MT_COB exon6 yes 7308 7021 7040 32.11354 271.887513 152.0005265 2.181845092 0.190723 163 15 1578 Leu4 LeuCAA_iv intron/tRNA no 314 i23 43 67.779703 334.921627 201.350665 2.303953068 -0.053534 163 16 14297 MT_VAR1 VAR1 yes 1467 661 689 26.322301 308.168104 167.2452025 2.223353669 -0.284535 163 17 7568 snR189 5_flank no 389 34.186232 258.113255 146.1497435 2.164798057 0.351757 163 18 3765 Val4 ValTAC tRNA yes 274 50 64 28.696768 290.693061 159.6949145 2.203291086 -0.072603 163 19 18078 YLR344W intron no 547 321 340 29.126547 275.334464 152.2305055 2.18250169 0.022777 163 20 19315 YPL198W intron no 509 361 375 81.287067 349.380648 215.3338575 2.33311232 -0.065669 163 21 20606 YHR077C spliced yes 40 13 28 63.225276 331.935536 197.580406 2.295743874 -0.060608 163 22 13045 MT_COX1 ai2 no 13084 4876 4897 30.714603 284.28064 157.4976215 2.197274 0.062147 163 23 3915 RNase MRP 5_flank/RNaseMRP no 540 31.15215 295.353513 163.2528315 2.212860723 0.006564 163 24 8806 LSR1 / U2 RNA U2 yes 1375 671 689 37.9063 287.832193 162.8692465 2.211839087 0.196297 163 25 11671 "rRNA(18S,5.8S,25S)" 25S yes 7956 5241 5258 26687.17555 22617.0023 24652.08892 4.391853726 -0.557366 163 26 17774 YKL180W intron no 406 141 163 31.886035 321.804346 176.8451905 2.247593253 -0.151031 163 27 17219 YHR041C intron no 201 61 73 38.52147 287.722837 163.1221535 2.212512946 0.203902 163 28 4515 U3b (snR17b) U3b yes 662 131 148 36.449535 307.404238 171.9268865 2.235343798 0.016956 163 29 7323 snR66 3_flank no 286 34.362654 303.241351 168.8020025 2.227377594 0.026775 163 30 11451 "rRNA(18S,5.8S,25S)" 25S yes 7956 4141 4158 10825.73927 23648.04354 17236.89141 4.236458946 -1.735627 163 31 8053 snoRNA cluster 2 intergenic no 739 501 523 32.353772 308.946521 170.6501465 2.232106665 -0.044231 163 32 19268 YPL143W intron no 625 241 255 39.028683 292.728662 165.8786725 2.219790551 0.159878 163 33 2132 Met1 MetCAT_i tRNA yes 273 46 60 32.460789 295.19241 163.8265995 2.214384417 0.050538 163 34 18283 YML067C exon/intron no 193 41 57 32.463438 291.612654 162.038046 2.209616997 0.073088 163 35 20021 YBR089C-A spliced yes 40 17 39 32.437761 326.044816 179.2412885 2.253438057 -0.17628 163 36 14119 MT_COB intronic no 7308 5971 5992 34.598548 303.892271 169.2454095 2.228516898 0.024309 163 37 11030 "rRNA(18S,5.8S,25S)" 18S yes 7956 2036 2049 44973.64919 20887.49676 32930.57297 4.517599287 0.214265 163 38 10903 "rRNA(18S,5.8S,25S)" 18S yes 7956 1401 1421 6950.600372 10230.44472 8590.522544 3.934019582 -0.881501 163 39 13455 MT_COX1 intronic no 13084 11026 11045 32.335744 301.027079 166.6814115 2.22188717 0.010471 163 40 20772 YKL002W spliced yes 40 21 38 34.501 321.796652 178.148826 2.250782965 -0.118335 163 41 706 Gln3 GlnTTG_ii tRNA/3_flank no 272 45.415117 288.14657 166.7808435 2.222146166 0.219457 163 42 9744 RUF4 RUF4 yes 988 496 510 34.342857 279.684741 157.013799 2.195937822 0.208749 163 43 12772 MT_COX1 ai1 no 13084 781 797 32.048886 310.018373 171.0336295 2.233081512 -0.056711 163 44 8993 snR17a / U3a U3a yes 690 251 266 55.898174 300.712039 178.3051065 2.251163781 0.150096 163 45 13751 MT_COB exon1 yes 7308 451 473 31.870732 296.29386 164.082296 2.215061724 0.024525 163 46 2350 Phe3 PheGAA_iii tRNA yes 291 58 74 34.000006 294.957413 164.4787095 2.21610969 0.090833 163 47 1353 Ile3 IleTAT_ii 3_flank no 333 31.836377 289.068025 160.452201 2.205345679 0.068857 163 48 17387 YIL069C intron no 509 81 98 36.15071 300.391669 168.2711895 2.226009765 0.071113 163 49 20136 YDL083C spliced yes 40 17 34 31.787443 294.250898 163.0191705 2.212238679 0.034532 163 50 11793 "rRNA(18S,5.8S,25S)" 25S yes 7956 5851 5868 880.617181 1091.754284 986.1857325 2.993958715 0.166811 163 51 15166 MT_Val tRNA/3_flank no 276 166 187 29.42242 316.822539 173.1224795 2.238353464 -0.182281 163 52 12317 5S rRNA NTS2 no 1420 541 555 79.747132 326.925218 203.336175 2.30821465 0.081035 163 53 4834 snR8 5_flank no 390 33.415877 285.801673 159.608775 2.203056764 0.140343 163 54 13459 MT_COX1 intronic no 13084 11086 11107 33.326022 321.48036 177.403191 2.248961427 -0.130252 163 55 6937 snR58 snR58 yes 296 46 62 37.50923 291.806641 164.6579355 2.216582666 0.158046 163 56 16414 YER056C intron no 497 341 362 33.236388 283.566388 158.401388 2.199758983 0.149175 163 57 17247 YHR097C exon/intron no 224 41 60 39.528821 322.291232 180.9100265 2.257462637 -0.107488 163 58 20950 YLR448W spliced yes 40 17 31 43.6666 313.728011 178.6973055 2.252118004 -0.019444 163 59 14378 MT_ORF9; ORF10 ORF10 yes 578 436 462 28.814306 291.975004 160.394655 2.205189892 -0.072111 163 60 15728 YBR230C 5_exon no 197 21 35 92.622411 339.057636 215.8400235 2.33413198 0.077334 163 61 509 Asp2 AspGTC_ii 3_flank no 272 51.613038 307.338433 179.4757355 2.254005742 0.071197 163 62 18469 YMR143W intron no 644 381 400 32.670654 324.538959 178.6048065 2.251893142 -0.161877 163 63 513 Asp2 AspGTC_ii 3_flank no 272 36.732906 316.872489 176.8026975 2.247488887 -0.067098 163 64 14516 MT_21S 21S_rRNA3 yes 4639 1951 1965 40.807735 300.185786 170.4967605 2.231716132 0.093661 163 65 8351 snoRNA cluster4 3_flank no 638 541 560 48.027486 351.002004 199.514745 2.299974997 -0.295242 163 66 5738 snR34 3_flank no 750 38.684053 298.493823 168.588938 2.226829075 0.104574 163 67 17281 YHR141C intron no 541 141 162 32.518916 289.961368 161.240142 2.207473172 0.085326 163 68 15700 YBR220C intron no 521 161 179 32.606473 313.515352 173.0609125 2.238198989 -0.077289 163 69 5040 snR10 snR10/3_flank no 445 30.658772 302.693169 166.6759705 2.221872993 -0.0553 163 70 2513 Pro1 ProAGG tRNA yes 272 56 68 56.044733 297.78141 176.9130715 2.247759923 0.176225 163 71 21587 copy of SH6044 no 586 28.899355 300.134966 164.5171605 2.216211205 -0.104237 163 72 4470 U3b (snR17b) 5_flank no 662 30.138048 290.921967 160.5300075 2.205556226 -0.000159 163 73 3048 Ser3 SerCGA 5_flank no 301 46.355573 319.557037 182.956305 2.262347381 -0.058104 163 74 5809 snR35 snR35 yes 740 231 247 40.181046 303.431608 171.806327 2.235039153 0.062199 163 75 10248 RUF6 3_flank no 1251 33.940116 296.365933 165.1530245 2.217886531 0.07833 163 76 3041 Ser3 SerCGA 5_flank no 301 96.092227 304.662359 200.377293 2.301848505 0.345912 163 77 2202 Met2 MetCAT_ii 3_flank no 272 29.984675 292.482882 161.2337785 2.207456032 -0.015339 163 78 3334 Thr3 ThrTGT_i tRNA yes 272 16 30 38.948218 304.211751 171.5799845 2.234466624 0.052179 163 79 11459 "rRNA(18S,5.8S,25S)" 25S yes 7956 4181 4196 3319.514013 3672.942777 3496.228395 3.543599796 -0.078211 163 80 15899 YDL083C intron no 532 61 79 32.633747 285.631864 159.1328055 2.201759719 0.116705 163 81 9390 RUF1 RUF1 yes 750 526 545 37.10244 330.182293 183.6423665 2.263972881 -0.181148 163 82 13188 MT_COX1 exon4 yes 13084 7021 7042 30.383182 297.329223 163.8562025 2.214462886 -0.03181 163 83 13445 MT_COX1 intronic no 13084 10876 10900 36.806304 342.951157 189.8787305 2.278476319 -0.287896 163 84 19235 YPL090C intron no 494 261 277 34.308503 280.556901 157.432702 2.197094949 0.201972 163 85 5010 snR10 snR10 yes 445 81 97 43.695734 332.918459 188.3070965 2.274866687 -0.180747 163 86 12880 MT_COX1 ai1 no 13084 2401 2421 29.326754 293.518671 161.4227125 2.207964641 -0.051743 163 87 6502 snR46 snR46 yes 397 1 13 42.809121 267.414647 155.111884 2.190645073 0.421032 163 88 13156 MT_COX1 intronic no 13084 6541 6557 32.980562 283.386294 158.183428 2.199160983 0.142276 163 89 11794 "rRNA(18S,5.8S,25S)" 25S yes 7956 5856 5873 1031.610359 1768.761153 1400.185756 3.146185655 -0.404631 163 90 15905 YDL083C intron no 532 181 198 49.129531 283.169241 166.149386 2.220498741 0.278448 163 91 13528 MT_COX1 intronic no 13084 12121 12149 28.206867 276.511276 152.3590715 2.182868317 -0.032755 163 92 7637 snR189 3_flank no 389 32.114049 327.660177 179.887113 2.255000052 -0.192647 163 93 1571 Leu4 LeuCAA_iv tRNA/intron no 314 25 i4 33.969059 318.420672 176.1948655 2.245993248 -0.098705 163 94 7057 snR62 snR62 yes 300 76 95 33.825588 325.685863 179.7557255 2.254682732 -0.156211 163 95 19509 ACT1 ACT1 yes 401 81 97 31.732126 281.923574 156.82785 2.195423189 0.111509 163 96 327 Arg5 ArgTCT 5_flank no 272 29.7279 278.861525 154.2947125 2.188351044 0.03758 163 97 8405 snoRNA cluster 5 snR190 yes 586 191 208 31.855761 315.773911 173.814836 2.240086843 -0.104673 163 98 12766 MT_COX1 ai1 no 13084 691 712 30.019315 304.49301 167.2561625 2.223382128 -0.088226 163 99 1740 Leu7 LeuTAA 5_flank/tRNA no 284 109.343652 318.656787 214.0002195 2.330414219 0.319143 163 100 10480 RUF8 RUF8 yes 1151 326 342 34.765824 295.929851 165.3478375 2.218398519 0.091922 163 101 19796 Negative Control no 60 NA #VALUE! 51.0581 272.341491 161.6997955 2.208709471 0.390875 163 102 14623 MT_21S Sce1 no 4639 3556 3578 29.120287 340.310889 184.715588 2.266503547 -0.326786 163 103 7995 snoRNA cluster 2 intergenic no 739 211 228 33.695268 299.434681 166.5649745 2.221583683 0.049874 163 104 5096 snR11 snR11 yes 458 81 97 36.146801 295.359572 165.7531865 2.219461886 0.112818 164 2 2230 Phe1 PheGAA_i tRNA/intron no 292 26 i5 47.180192 337.011746 192.095969 2.283518252 -0.194163 164 3 14744 MT_ORF11; Leu; Gln 5_flank no 716 46 58 46.93807 287.155204 167.046637 2.222837737 0.233608 164 4 20188 YDL219W spliced yes 40 5 26 29.120109 313.495303 171.307706 2.233776899 -0.173627 164 5 21443 TH299 - control cDNA - flipped; WTP_225 no 36.076398 310.507592 173.291995 2.238778502 -0.01205 164 6 18010 YLR287C intron no 530 381 400 31.741805 319.337238 175.5395215 2.24437491 -0.133889 164 7 7465 snR71 5_flank no 290 36.472172 291.246064 163.859118 2.214470613 0.151189 164 8 3670 Val2 ValAAC_ii 3_flank no 274 29.190914 307.408265 168.2995895 2.226083057 -0.13499 164 9 18655 YNL112W intron no 1102 281 295 42.719779 321.697876 182.2088275 2.260569413 -0.091377 164 10 18855 YNR053C intron no 631 81 97 34.545856 315.134354 174.840105 2.242641059 -0.066095 164 11 1605 Leu4 LeuCAA_iv 3_flank no 314 59.641177 356.041533 207.841355 2.317731965 -0.257968 164 12 12474 5S rRNA 5S yes 1420 1326 1340 59099.73377 22589.41354 40844.57366 4.611134367 0.41929 164 13 2509 Pro1 ProAGG tRNA yes 272 36 48 164.065244 440.832991 302.4491175 2.480652322 -0.066177 164 14 17152 YHR012W intron no 219 101 113 35.718519 289.985849 162.852184 2.211793587 0.15326 164 15 14604 MT_21S Sce1 no 4639 3271 3290 31.867683 300.026539 165.947111 2.219969696 0.001375 164 16 15591 YBR084C 3_exon no 606 581 595 49.239321 317.453868 183.3465945 2.263272848 -0.025851 164 17 681 Gln3 GlnTTG_ii 5_flank no 272 32.1789 278.459835 155.3193675 2.191225613 0.148869 164 18 6566 snR47 5_flank no 299 54.11373 312.622278 183.368004 2.263323558 0.039919 164 19 5919 snR36 snR36 yes 555 51 70 33.086393 290.791041 161.938717 2.209350694 0.098131 164 20 871 Glu2 GluTTC_i 3_flank no 272 29.677141 287.251935 158.464538 2.199932089 -0.00455 164 21 4770 snR5 snR5 yes 404 21 35 34.366616 292.502666 163.434641 2.213344113 0.115927 164 22 14480 MT_21S 21S_rRNA3 yes 4639 1411 1428 28.711053 298.578334 163.6446935 2.213901927 -0.107469 164 23 14207 MT_ATP9 5_flank no 431 1 29 29.143115 303.356445 166.24978 2.220761079 -0.112273 164 24 14867 MT_Ser2; Arg2 3_flank no 360 271 299 29.47804 312.934651 171.2063455 2.233519857 -0.157575 164 25 9070 snR14 / U4 RNA 5_flank no 360 40.547386 296.454336 168.500861 2.226602124 0.128026 164 26 15183 MT_COX3 cox3 no 1010 166 185 32.055425 303.278079 167.666752 2.224446951 -0.012337 164 27 15233 MT_COX3 3_flank no 1010 916 938 29.995417 312.413901 171.204659 2.233515579 -0.13634 164 28 21849 copy of SH17599 no 243 34.456419 305.635728 170.0460735 2.230566608 0.008467 164 29 1166 His1 HisGTG tRNA yes 272 51 66 160.893982 448.391861 304.6429215 2.483791092 -0.117447 164 30 14676 MT_21S 21S_rRNA4 yes 4639 4351 4373 32.42052 322.325522 177.373021 2.248887563 -0.148147 164 31 1649 Leu5 LeuCAA_v tRNA/3_flank no 315 34.69585 299.3303 167.013075 2.222750472 0.062852 164 32 12802 MT_COX1 ai1 no 13084 1231 1252 30.342419 321.964517 176.153468 2.245891198 -0.179771 164 33 7490 snR71 snR71 yes 290 66 85 32.579582 305.405898 168.99274 2.227868048 -0.012866 164 34 4882 snR8 3_flank no 390 32.579811 318.576582 175.5781965 2.244470584 -0.117205 164 35 5514 snR32 3_flank no 388 30.347313 293.226535 161.786924 2.208943418 -0.007461 164 36 14426 MT_21S 21S_rRNA3 yes 4639 601 625 32.511719 324.559617 178.535668 2.251724993 -0.164054 164 37 16503 YER117W intron no 571 241 255 101.882463 340.691435 221.286949 2.344955801 0.123761 164 38 2754 Pro5 ProTGG_iv 3_flank no 303 32.429418 324.846815 178.6381165 2.251974131 -0.167289 164 39 2750 Pro5 ProTGG_iv 3_flank no 303 32.387153 273.107786 152.7474695 2.183974024 0.191338 164 40 6894 snR56 3_flank no 288 32.32842 300.294003 166.3112115 2.220921527 0.014724 164 41 4551 U3b (snR17b) U3b yes 662 311 330 32.242696 323.484784 177.86374 2.25008742 -0.159297 164 42 3136 Ser4 SerGCT tRNA yes 301 4558.489929 4281.05764 4419.773785 3.645400042 0.05618 164 43 7820 snoRNA cluster1 intergenic no 1574 896 913 34.190004 318.267384 176.228694 2.246076623 -0.094831 164 44 12442 5S rRNA NTS2 no 1420 1166 1180 78.890422 335.873636 207.382029 2.316771119 0.011002 164 45 11110 "rRNA(18S,5.8S,25S)" 18S yes 7956 2436 2454 31.885425 302.640541 167.262983 2.223399838 -0.014015 164 46 21592 copy of SH6253 no 551 49.270416 319.210062 184.240239 2.265384488 -0.040259 164 47 18584 YNL050C 5_exon no 191 21 40 29.778296 333.226345 181.5023205 2.258882182 -0.265543 164 48 8049 snoRNA cluster 2 intergenic no 739 481 498 31.978876 315.590794 173.784835 2.240011876 -0.101643 164 49 4693 snR4 snR4 yes 386 1 18 34.132654 304.928945 169.5307995 2.22924861 0.010279 164 50 20965 YML026C spliced yes 40 5 22 31.877276 300.430036 166.153656 2.220509902 -0.000785 164 51 9286 RUF1 RUF1 yes 750 6 22 31.725017 306.944479 169.334748 2.228746086 -0.045281 164 52 13082 MT_COX1 ai3 no 13084 5431 5450 29.402311 308.984333 169.193322 2.228383218 -0.136871 164 53 17000 YGR118W intron no 420 341 363 39.882271 307.023016 173.4526435 2.239180923 0.028641 164 54 2370 Phe4 PheGAA_iv 5_flank no 291 31.212244 312.202974 171.707609 2.234789541 -0.093572 164 55 19994 YBR048W spliced yes 40 5 21 31.10299 292.760382 161.931686 2.209331838 0.021152 164 56 18599 YNL069C intron no 549 141 160 33.122175 314.501432 173.8118035 2.240079266 -0.078552 164 57 10278 RUF7 RUF7 yes 700 1 18 35.134984 303.203069 169.1690265 2.22832085 0.03629 164 58 18348 YML124C intron no 398 281 298 35.026274 316.809724 175.917999 2.245310276 -0.073481 164 59 565 Cys1 CysGCA 3_flank no 272 30.728106 292.357578 161.542842 2.208287719 0.011024 164 60 1211 Ile1 IleAAT tRNA yes 274 16 29 55.66602 320.468834 188.067427 2.274313583 -0.015859 164 61 9687 RUF4 RUF4 yes 988 211 227 46.078815 293.603601 169.841208 2.23004307 0.170061 164 62 18468 YMR143W intron no 644 361 382 32.480691 315.909726 174.1952085 2.241036205 -0.097692 164 63 7166 snR63 3_flank no 455 30.354005 300.177436 165.2657205 2.218182781 -0.050366 164 64 7680 snoRNA cluster1 intergenic no 1574 196 217 38.560295 321.224748 179.8925215 2.255013109 -0.100781 164 65 2818 Pro6 ProTGG_v 3_flank no 302 30.315386 324.376564 177.345975 2.248821336 -0.194444 164 66 2530 Pro1 ProAGG 3_flank no 272 36.526867 293.151265 164.839066 2.217060145 0.135696 164 67 2584 Pro2 ProTGG_i 3_flank no 303 32.470087 293.512856 162.9914715 2.212164881 0.061343 164 68 18231 YML026C intron no 501 221 242 30.504783 322.730836 176.6178095 2.247034494 -0.178576 164 69 4141 SRP SRP yes 875 596 610 70.432982 306.151093 188.2920375 2.274831955 0.18407 164 70 15860 YDL079C intron no 392 121 135 47.571606 326.825248 187.198427 2.272302195 -0.111113 164 71 13915 MT_COB bi3 no 7308 2911 2937 28.877878 323.251696 176.064787 2.245672506 -0.238776 164 72 7000 snR60 snR60 yes 304 81 97 33.291622 294.604237 163.9479295 2.214705936 0.080601 164 73 17327 YIL004C intron no 231 161 178 35.645401 315.326701 175.486051 2.244242601 -0.056179 164 74 5379 snR31 5_flank no 425 31.593765 300.046563 165.820164 2.21963734 -0.007762 164 75 12916 MT_COX1 ai2 no 13084 2941 2957 36.125666 292.725108 164.425387 2.215968873 0.134718 164 76 8474 snoRNA cluster 5 3_flank no 586 536 553 34.18832 325.425293 179.8068065 2.254806128 -0.149816 164 77 4651 snR3 snR3 yes 395 171 186 45.378618 322.334203 183.8564105 2.264478777 -0.086178 164 78 15351 YBL026W 5_exon no 228 1 20 34.613538 280.831184 157.722361 2.19789327 0.209416 164 79 8089 snoRNA cluster 2 3_flank no 739 681 697 32.573442 298.389903 165.4816725 2.218749902 0.03432 164 80 6543 snR46 3_flank no 397 39.330297 317.765648 178.5479725 2.251754923 -0.068725 164 81 2137 Met1 MetCAT_i tRNA/3_flank no 273 34.891426 305.980695 170.4360605 2.231561487 0.010874 164 82 14317 MT_VAR1 VAR1 yes 1467 961 989 30.354122 312.192327 171.2732245 2.233689474 -0.12262 164 83 17359 YIL052C intron no 572 81 100 30.14217 289.500948 159.821559 2.203635363 0.008999 164 84 7391 snR68 3_flank no 336 40.72646 345.564398 193.145429 2.285884435 -0.294487 164 85 1981 Lys2 LysCTT_ii 3_flank no 273 38.12114 286.549193 162.3351665 2.210412611 0.209678 164 86 12248 5S rRNA NTS2 no 1420 196 208 65.574331 307.42936 186.5018455 2.270683134 0.145825 164 87 12046 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7116 7131 56.442581 310.7688 183.6056905 2.263886137 0.067816 164 88 19172 YPL079W intron no 521 121 140 30.801268 320.095648 175.448458 2.244149556 -0.15338 164 89 7674 snoRNA cluster1 snR78 yes 1574 166 185 30.627168 297.65154 164.139354 2.21521272 -0.025453 164 90 1098 Gly4 GlyTCC 5_flank no 272 32.551242 306.723881 169.6375615 2.229522021 -0.023868 164 91 7263 snR65 snR65/3_flank no 300 34.462033 302.025688 168.2438605 2.225939225 0.037898 164 92 8754 LSR1 / U2 RNA U2 yes 1375 411 430 34.29199 309.84083 172.06641 2.235696098 -0.027284 164 93 15869 YDL079C intron no 392 301 319 30.03864 303.803631 166.9211355 2.22251133 -0.083381 164 94 1208 Ile1 IleAAT tRNA yes 274 1 13 42.111951 287.611197 164.861574 2.217119442 0.216098 164 95 14092 MT_COB bi4 no 7308 5566 5585 31.836896 318.961484 175.39919 2.244027583 -0.12974 164 96 13576 MT_COX1 exon6 yes 13084 12841 12862 29.797531 287.45795 158.6277405 2.200379138 0.000785 164 97 11372 "rRNA(18S,5.8S,25S)" 25S yes 7956 3746 3766 29.874868 299.840728 164.857798 2.217109495 -0.064914 164 98 4637 snR3 snR3 yes 395 101 117 46.443709 279.663718 163.0537135 2.212330694 0.30461 164 99 12414 5S rRNA NTS2 no 1420 1026 1040 42.693951 282.587881 162.640916 2.211229812 0.266583 164 100 21327 YPR043W spliced yes 40 1 18 80.799762 357.103711 218.9517365 2.340348394 -0.120192 164 101 10842 "rRNA(18S,5.8S,25S)" 18S yes 7956 1096 1119 28.798869 326.558524 177.6786965 2.249635359 -0.260376 164 102 17887 YLR048W intron no 459 261 278 35.448631 318.3688 176.9087155 2.247749229 -0.083511 164 103 21924 copy of SH20399 no 40 31.420541 295.560715 163.490628 2.213492862 0.014231 164 104 8042 snoRNA cluster 2 intergenic no 739 446 465 33.774111 298.555693 166.164902 2.220539296 0.058107 165 2 18582 YNL044W 3_exon no 179 161 178 38.339185 327.560068 182.9496265 2.262331527 -0.155876 165 3 585 Gln1 GlnCTG 5_flank no 272 32.020176 303.183084 167.60163 2.224278238 -0.012909 165 4 7791 snoRNA cluster1 snR75 yes 1574 751 770 31.873137 304.544355 168.208746 2.225848573 -0.025964 165 5 4296 telomerase RNA telomerase yes 1501 516 530 31.677369 271.285654 151.4815115 2.18035963 0.172947 165 6 13575 MT_COX1 exon6 yes 13084 12826 12848 29.438328 311.477791 170.4580595 2.23161754 -0.150391 165 7 15346 YBL018C intron no 175 61 79 35.139738 279.690126 157.414932 2.197045926 0.232667 165 8 4895 snR8 3_flank no 390 30.887066 315.04284 172.964953 2.237958113 -0.12118 165 9 188 Arg2 ArgACG_ii tRNA yes 273 56 68 54.103538 293.090083 173.5968105 2.239541742 0.208081 165 10 3603 Val1 ValAAC_i tRNA yes 274 11 25 182.644619 418.448529 300.546574 2.477911782 0.132726 165 11 19804 Negative Control no 60 NA #VALUE! 37.825569 316.170567 176.998068 2.247968526 -0.058226 165 12 1521 Leu3 LeuCAA_iii tRNA yes 314 43 51 1662.990681 1318.98435 1490.987516 3.173474007 0.682006 165 13 8341 snoRNA cluster4 snR53 yes 638 491 510 29.827179 315.79231 172.8097445 2.237568228 -0.162017 165 14 5802 snR35 snR35 yes 740 196 215 35.439166 313.698728 174.568947 2.241966992 -0.04424 165 15 15705 YBR220C intron no 521 261 281 35.446921 311.482717 173.464819 2.239211407 -0.02663 165 16 7017 snR60 3_flank no 304 58.568073 331.183871 194.875972 2.289758294 -0.082694 165 17 17847 YKR094C intron no 468 381 398 32.03956 340.246737 186.1431485 2.269847055 -0.286763 165 18 6506 snR46 snR46 yes 397 21 39 28.57387 276.806308 152.690089 2.183810848 -0.014089 165 19 1697 Leu6 LeuGAG tRNA yes 282 51 63 1240.510129 1691.257302 1465.883716 3.16609952 -0.09336 165 20 13615 MT_ATP6 5_flank no 980 31 55 27.628725 309.69957 168.6641475 2.227022776 -0.215873 165 21 11020 "rRNA(18S,5.8S,25S)" 18S yes 7956 1986 2001 5257.766243 9733.622355 7495.694299 3.874811866 -1.138616 165 22 11057 "rRNA(18S,5.8S,25S)" 18S yes 7956 2171 2188 5831.080784 15143.56751 10487.32415 4.020664692 -1.749152 165 23 12090 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7336 7351 54.796845 314.373479 184.585162 2.266196787 0.029182 165 24 18603 YNL069C intron no 549 221 238 69.863936 339.543354 204.703645 2.311125576 -0.074187 165 25 8602 snR19 / U1 RNA U1 yes 868 506 525 34.149981 301.957895 168.053938 2.225448694 0.034687 165 26 10694 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 356 373 67.331789 359.941201 213.636495 2.329675444 -0.232095 165 27 7627 snR189 3_flank no 389 36.690079 278.225544 157.4578115 2.197164211 0.266685 165 28 2207 Phe1 PheGAA_i 5_flank no 292 30.195817 300.343627 165.269722 2.218193297 -0.056842 165 29 14319 MT_VAR1 VAR1 yes 1467 991 1019 30.255762 301.232521 165.7441415 2.219438186 -0.060212 165 30 791 Glu1 GluCTC 5_flank no 272 34.715325 283.532215 159.12377 2.20173506 0.194858 165 31 12099 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7381 7398 32.557192 299.627762 166.092477 2.220349962 0.026177 165 32 6491 snR46 5_flank no 397 32.593735 311.234958 171.9143465 2.235312121 -0.05941 165 33 75 Ala2 AlaTGC tRNA yes 273 11 23 39.254131 298.614913 168.934522 2.227718407 0.104777 165 34 9711 RUF4 RUF4 yes 988 331 347 31.497145 280.925152 156.2111485 2.193712025 0.11028 165 35 5411 snR31 snR31 yes 425 121 137 34.779544 292.994802 163.887173 2.214544964 0.116718 165 36 3504 Tyr1 TyrGTA_i tRNA yes 289 45 57 48.012964 294.710128 171.361546 2.233913372 0.165599 165 37 2194 Met2 MetCAT_ii 3_flank no 272 32.474954 288.120214 160.297584 2.204926977 0.095641 165 38 20228 YDR129C spliced yes 40 17 38 30.228558 308.79291 169.510734 2.229197204 -0.106791 165 39 19545 CBP1 2.2 CBP1 2.2 yes 401 1 18 33.469569 329.538612 181.5040905 2.258886417 -0.189656 165 40 2086 Lys4 LysTTT_ii tRNA/3_flank no 296 36.688661 303.594754 170.1417075 2.230810787 0.051017 165 41 6680 snR49 5_flank no 365 34.399651 300.510058 167.4548545 2.223897742 0.049581 165 42 15243 MT_fMet 5_flank/tRNA no 274 76 102 32.110123 322.939855 177.524989 2.249259494 -0.156836 165 43 3683 Val2 ValAAC_ii 3_flank no 274 34.183673 278.012253 156.097963 2.193397236 0.214941 165 44 17459 YIL148W intron no 534 281 297 51.529494 316.745994 184.137744 2.265142818 -0.008525 165 45 8233 snoRNA cluster 3; 3_flank no 743 676 690 49.331533 301.624696 175.4781145 2.244222959 0.109632 165 46 16317 YDR471W intron no 484 101 115 42.855518 304.429241 173.6423795 2.239655729 0.060416 165 47 11079 "rRNA(18S,5.8S,25S)" 18S yes 7956 2281 2296 29.886172 271.409342 150.647757 2.17796267 0.0819 165 48 18600 YNL069C intron no 549 161 178 32.115281 306.662394 169.3888375 2.228884788 -0.030821 165 49 12601 MT_15S 15S yes 1848 766 785 32.108006 302.362009 167.2350075 2.223327194 -0.005056 165 50 9490 RUF2 3_flank no 468 36.356609 335.738438 186.0475235 2.269623893 -0.229629 165 51 18581 YNL044W 3_exon no 179 141 158 31.833386 285.474233 158.6538095 2.200450505 0.091792 165 52 960 Gly1 GlyCCC_i tRNA yes 272 51 63 45.581294 300.427264 173.004279 2.238056845 0.105495 165 53 3201 Ser5 SerTGA 3_flank no 282 31.378717 311.86918 171.6239485 2.234577889 -0.086048 165 54 16134 YDR064W 3_exon no 639 601 618 39.656063 289.350617 164.50334 2.21617472 0.193764 165 55 12815 MT_COX1 ai1 no 13084 1426 1445 31.027484 310.653659 170.8405715 2.232591016 -0.090612 165 56 17510 YJL136C intron no 560 161 177 35.105068 306.245878 170.675473 2.232171115 0.01126 165 57 14139 MT_COB intronic no 7308 6271 6297 30.804336 323.558636 177.181486 2.24841834 -0.178757 165 58 16129 YDR064W intron no 639 501 518 32.781426 286.557835 159.6696305 2.20322232 0.115461 165 59 11188 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2826 2844 32.660449 271.115148 151.8877985 2.181522887 0.213595 165 60 5284 snR30 snR30 yes 801 271 288 30.470766 293.062142 161.766454 2.208888466 -0.002189 165 61 18287 YML067C intron no 193 121 141 28.309202 301.21704 164.763121 2.21686001 -0.141087 165 62 7155 snR63 3_flank no 455 30.285223 287.904225 159.094724 2.201655778 0.023944 165 63 14316 MT_VAR1 VAR1 yes 1467 946 974 28.184992 313.19473 170.689861 2.232207725 -0.205944 165 64 958 Gly1 GlyCCC_i tRNA yes 272 41 53 48.729481 308.555603 178.642542 2.25198489 0.046644 165 65 21755 copy of SH13180 no 13084 48.75578 299.401801 174.0787905 2.240745861 0.126275 165 66 10490 RUF8 RUF8 yes 1151 376 393 32.333449 310.420744 171.3770965 2.233952781 -0.056256 165 67 8064 snoRNA cluster 2 snR61 yes 739 556 577 30.35945 302.50214 166.430795 2.221233688 -0.064383 165 68 6074 snR37 snR37 yes 586 286 302 30.469105 291.494021 160.981563 2.20677614 0.007632 165 69 21767 copy of SH13602 no 347 28.531544 288.241585 158.3865645 2.199718339 -0.070297 165 70 10107 RUF6 RUF6 yes 1251 381 398 32.855105 296.235176 164.5451405 2.216285061 0.056654 165 71 12649 MT_15S 15S yes 1848 1486 1507 30.949036 321.763393 176.3562145 2.246390768 -0.163066 165 72 11959 "rRNA(18S,5.8S,25S)" 25S yes 7956 6681 6694 45.988328 296.034501 171.0114145 2.233025099 0.147164 165 73 6678 snR49 5_flank no 365 33.483965 309.849456 171.6667105 2.234686085 -0.037226 165 74 14515 MT_21S 21S_rRNA3 yes 4639 1936 1953 31.570553 303.871344 167.7209485 2.22458731 -0.031851 165 75 13016 MT_COX1 ai2 no 13084 4441 4460 33.945084 286.500239 160.2226615 2.204723942 0.152256 165 76 16361 YEL012W intron no 223 61 83 29.832583 312.487776 171.1601795 2.233402733 -0.142459 165 77 6783 snR50 3_flank no 290 30.027995 305.003899 167.515947 2.224056157 -0.09101 165 78 5582 snR33 3_flank no 383 32.405458 299.212899 165.8091785 2.219608568 0.02385 165 79 9586 RUF3 RUF3 yes 631 316 337 30.353366 333.96618 182.159773 2.260452476 -0.263104 165 80 17549 YJL177W 3_exon no 417 381 397 34.863573 295.756748 165.3101605 2.218299548 0.09453 165 81 1654 Leu5 LeuCAA_v 3_flank no 315 30.421916 284.361084 157.3915 2.196981274 0.047431 165 82 3399 Thr4 ThrTGT_ii 3_flank no 272 32.501108 284.742249 158.6216785 2.200362541 0.118196 165 83 18756 YNL162W intron no 612 441 460 30.067352 307.402107 168.7347295 2.22720448 -0.104063 165 84 4456 telomerase RNA 3_flank no 1501 31.923905 300.71124 166.3175725 2.220938138 -0.000981 165 85 19264 YPL143W intron no 625 161 177 35.849775 284.015439 159.932607 2.203937017 0.206191 165 86 9626 RUF4 5_flank no 988 207.566039 485.160233 346.363136 2.539531663 -0.045975 165 87 11780 "rRNA(18S,5.8S,25S)" 25S yes 7956 5786 5803 7845.866373 13510.23151 10678.04894 4.028491907 -1.197088 165 88 5216 snR30 5_flank no 801 30.747129 298.902432 164.8247805 2.217022506 -0.029092 165 89 15959 YDL130W intron no 401 161 177 38.937174 296.750153 167.8436635 2.22490495 0.12154 165 90 4975 snR10 5_flank no 445 34.650351 292.261558 163.4559545 2.213400746 0.12137 165 91 15256 MT_9S 5_flank no 701 16 42 26.280336 308.174519 167.2274275 2.223307509 -0.287042 165 92 18399 YMR125W intron no 422 121 140 32.324176 283.226529 157.7753525 2.198039159 0.122323 165 93 13209 MT_COX1 ai4 no 13084 7336 7360 28.075359 320.672624 174.3739915 2.241481709 -0.253457 165 94 12822 MT_COX1 ai1 no 13084 1531 1555 29.964681 327.058248 178.5114645 2.251666113 -0.221753 165 95 4778 snR5 snR5 yes 404 61 78 29.84933 329.150033 179.4996815 2.254063682 -0.237519 165 96 20592 YHR039C-A spliced yes 40 5 22 37.921833 290.398234 164.1600335 2.215267432 0.174532 165 97 5629 snR34 snR34 yes 750 66 80 40.041796 269.979645 155.0107205 2.190361735 0.377232 165 98 21097 YNL044W spliced yes 40 13 29 32.079312 288.741158 160.410235 2.205232075 0.078878 165 99 5591 snR33 3_flank no 383 30.286029 312.421085 171.353557 2.233893124 -0.126314 165 100 507 Asp2 AspGTC_ii 3_flank no 272 100.179425 320.053115 210.11627 2.322459683 0.256121 165 101 19355 YPL249C intron no 337 241 257 30.868501 322.098816 176.4836585 2.246704498 -0.16672 165 102 5502 snR32 snR32 yes 388 171 188 31.122671 307.775 169.4488355 2.229038589 -0.070273 165 103 4554 U3b (snR17b) U3b yes 662 326 342 37.770095 345.065579 191.417837 2.281982404 -0.301257 165 104 21441 TH213 - control oligo; WTP_223 no 33.616001 271.453529 152.534765 2.183368837 0.241411 166 2 20763 YJR145C spliced yes 40 9 21 83.958041 316.637492 200.2977665 2.301676107 0.182771 166 3 15656 YBR189W intron no 513 261 278 35.858977 302.694166 169.2765715 2.228596854 0.048887 166 4 21044 YMR142C spliced yes 40 1 18 42.777457 306.847495 174.812476 2.242572424 0.038453 166 5 21826 copy of SH16121 no 639 35.447935 309.807035 172.627485 2.237109943 -0.013287 166 6 12344 5S rRNA NTS2 no 1420 676 690 73.285599 322.465083 197.875341 2.296391676 0.072874 166 7 20512 YGR029W spliced yes 40 9 24 38.82126 276.310269 157.5657645 2.197461861 0.307135 166 8 8044 snoRNA cluster 2 intergenic no 739 456 477 30.648487 286.043431 158.345959 2.199606985 0.048515 166 9 18791 YNL301C intron no 532 161 173 41.992373 298.276603 170.134488 2.230792358 0.114101 166 10 15753 YCR031C intron no 407 141 159 43.560178 326.547693 185.0539355 2.267298326 -0.129646 166 11 12821 MT_COX1 ai1 no 13084 1516 1535 37.503391 293.877415 165.690403 2.219297354 0.140506 166 12 21164 YNL302C spliced yes 40 5 20 44.880958 303.945736 174.413347 2.241579716 0.071352 166 13 15930 YDL108W 3_exon no 181 141 157 42.801822 316.544422 179.673122 2.254483114 -0.046807 166 14 10429 RUF8 RUF8 yes 1151 71 88 30.471155 292.452171 161.461663 2.208069421 0.00166 166 15 8393 snoRNA cluster 5 snR190 yes 586 131 143 31.449837 289.65712 160.5534785 2.205619719 0.052353 166 16 2991 Ser2 SerAGA_ii 5_flank no 282 27.826441 273.691589 150.759015 2.178283291 -0.042634 166 17 17700 YKL081W 5_exon no 426 1 13 78.966426 321.116125 200.0412755 2.301119615 0.119256 166 18 20953 YML024W spliced yes 40 5 22 85.768359 371.902626 228.8354925 2.359523385 -0.180182 166 19 19586 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 21 37 34.902925 303.4452 169.1740625 2.228333778 0.031574 166 20 18144 YLR406C intron no 449 261 276 29.583403 274.575035 152.079219 2.182069874 0.050637 166 21 9531 RUF3 RUF3 yes 631 41 58 42.542922 328.777375 185.6601485 2.268718693 -0.151677 166 22 8597 snR19 / U1 RNA U1 yes 868 481 497 37.077683 302.371782 169.7247325 2.229745133 0.064636 166 23 17719 YKL081W 3_exon no 426 381 397 31.315208 295.19977 163.257489 2.212873113 0.012975 166 24 17329 YIL004C 3_exon no 231 201 217 31.729543 287.186904 159.4582235 2.202646921 0.077367 166 25 18374 YMR079W 3_exon no 256 221 238 32.036802 289.543974 160.790388 2.206260083 0.072381 166 26 16898 YGL226C intron no 249 121 137 47.608485 305.120093 176.364289 2.246410652 0.070484 166 27 21139 YNL162W spliced yes 40 5 25 32.383177 316.223813 174.303495 2.241306095 -0.101393 166 28 3029 Ser2 SerAGA_ii 3_flank no 282 34.665988 293.735247 164.2006175 2.215374786 0.109126 166 29 19021 YOR182C intron no 511 301 320 32.509526 313.567761 173.0386435 2.238143102 -0.078935 166 30 8697 LSR1 / U2 RNA U2 yes 1375 126 143 56.932113 362.575632 209.7538725 2.321709988 -0.321783 166 31 15752 YCR031C intron no 407 121 133 50.283784 287.385685 168.8347345 2.227461799 0.241983 166 32 3318 Thr3 ThrTGT_i 5_flank no 272 32.562189 299.670466 166.1163275 2.220412321 0.026074 166 33 878 Glu3 GluTTC_ii 5_flank no 272 36.973686 328.756835 182.8652605 2.262131209 -0.169377 166 34 21283 YPL143W spliced yes 40 5 21 32.527956 295.45211 163.990033 2.214817453 0.051078 166 35 13966 MT_COB bi3 no 7308 3676 3698 30.28378 316.913349 173.5985645 2.23954613 -0.152677 166 36 11533 "rRNA(18S,5.8S,25S)" 25S yes 7956 4551 4568 41.246449 312.977703 177.112076 2.248248174 -0.020997 166 37 15413 YBL059C 3_exon no 185 161 178 36.777809 317.663412 177.2206105 2.248514228 -0.073952 166 38 1859 Leu9 LeuTAG_ii tRNA/intron no 301 35 i14 33.432673 288.503887 160.96828 2.206740303 0.123541 166 39 21180 YNR053C spliced yes 40 21 33 38.868636 312.39402 175.631328 2.244601985 -0.022167 166 40 17074 YGR225W intron no 193 61 78 32.23769 286.508675 159.3731825 2.202415245 0.098311 166 41 13473 MT_COX1 intronic no 13084 11296 11320 32.172087 306.27307 169.2225785 2.228458308 -0.026637 166 42 1970 Lys2 LysCTT_ii tRNA yes 273 51 63 43.009015 297.064494 170.0367545 2.230542807 0.128098 166 43 7534 snR79 snR79 yes 284 11 28 32.036247 300.760395 166.398321 2.22114894 0.002386 166 44 13453 MT_COX1 intronic no 13084 10996 11018 32.006695 316.862748 174.4347215 2.241632936 -0.111223 166 45 19195 YPL081W intron no 601 61 78 32.027326 288.154829 160.0910775 2.204367128 0.080927 166 46 20436 YGL076C spliced yes 40 17 31 53.95925 311.556245 182.7577475 2.261875797 0.047913 166 47 16239 YDR381W intron no 866 681 700 35.456692 325.737244 180.596968 2.256710455 -0.14742 166 48 16646 YFR031C exon/intron no 247 41 57 35.52043 304.183398 169.851914 2.230070445 0.032831 166 49 931 Gly1 GlyCCC_i 5_flank no 272 32.223347 296.917093 164.57022 2.21635125 0.032146 166 50 1473 Leu2 LeuCAA_ii 3_flank no 314 32.108599 310.595887 171.352243 2.233889794 -0.060539 166 51 6551 snR46 3_flank no 397 29.74132 312.723214 171.232267 2.233585606 -0.147045 166 52 525 Cys1 CysGCA 5_flank no 272 66.200533 338.723243 202.461888 2.306343282 -0.091252 166 53 13985 MT_COB intronic no 7308 3961 3973 35.631863 290.777849 163.204856 2.212733077 0.145513 166 54 10476 RUF8 RUF8 yes 1151 306 327 33.248616 303.33921 168.293913 2.226068408 0.012331 166 55 4427 telomerase RNA telomerase yes 1501 1171 1192 37.25543 305.862767 171.5590985 2.234413755 0.032998 166 56 4336 telomerase RNA telomerase yes 1501 716 735 30.807322 305.165559 167.9864405 2.225274228 -0.065231 166 57 7318 snR66 snR66/3_flank no 286 32.774737 286.926765 159.850751 2.203714681 0.112879 166 58 4539 U3b (snR17b) U3b yes 662 251 270 30.585235 313.99584 172.2905375 2.236261426 -0.125306 166 59 20563 YHR001W-A spliced yes 40 17 34 49.155812 345.620423 197.3881175 2.295321005 -0.248355 166 60 9758 RUF4 RUF4 yes 988 566 582 34.491804 302.686003 168.5889035 2.226828986 0.032859 166 61 17896 YLR048W 3_exon no 459 441 455 43.654829 302.68197 173.1683995 2.238468643 0.078836 166 62 12857 MT_COX1 ai1 no 13084 2056 2073 30.197359 328.90809 179.5527245 2.254191999 -0.227522 166 63 5933 snR36 snR36 yes 555 121 136 56.877054 308.421956 182.649505 2.2616185 0.089715 166 64 11817 "rRNA(18S,5.8S,25S)" 25S yes 7956 5971 5988 30.142431 291.774115 160.958273 2.206713304 -0.005393 166 65 4937 snR9 snR9 yes 387 91 108 34.261544 307.33095 170.796247 2.232478323 -0.007551 166 66 6995 snR60 snR60 yes 304 56 76 30.224708 323.668356 176.946532 2.247842055 -0.193548 166 67 1998 Lys3 LysTTT_i 5_flank no 296 30.312806 322.853786 176.583296 2.246949619 -0.185869 166 68 477 Asp2 AspGTC_ii 5_flank no 272 31.460725 295.870395 163.66556 2.213957301 0.013638 166 69 21206 YOL127W spliced yes 40 25 37 40.963043 289.495372 165.2292075 2.21808682 0.195328 166 70 18968 YOR096W exon/intron no 501 41 58 30.732721 313.574576 172.1536485 2.235916231 -0.11781 166 71 5945 snR36 snR36 yes 555 181 202 35.112775 355.729672 195.4212235 2.290971728 -0.394413 166 72 14854 MT_Ser2; Arg2 5_flank/tRNASer no 360 76 102 31.110549 318.246918 174.6787335 2.242240034 -0.133754 166 73 18913 YOL120C intron no 547 461 482 33.442531 303.669079 168.555805 2.226743714 0.012053 166 74 4744 snR4 3_flank no 386 31.529152 310.044568 170.78686 2.232454454 -0.07025 166 75 10953 "rRNA(18S,5.8S,25S)" 18S yes 7956 1651 1667 35533.14727 21474.40667 28503.77697 4.454902411 -0.120532 166 76 14332 MT_VAR1 VAR1 yes 1467 1186 1203 34.126203 293.273191 163.699697 2.214047876 0.106519 166 77 18683 YNL112W intron no 1102 841 857 35.43947 316.114383 175.7769265 2.244961866 -0.063679 166 78 19424 YPR132W intron no 465 201 222 32.35122 299.477213 165.9142165 2.219883601 0.020475 166 79 16207 YDR381W exon/intron no 866 41 58 32.498576 318.335812 175.417194 2.24407216 -0.116371 166 80 11719 "rRNA(18S,5.8S,25S)" 25S yes 7956 5481 5496 256.620246 446.216207 351.4182265 2.545824283 0.315043 166 81 7715 snoRNA cluster1 snR77 yes 1574 371 387 36.970318 313.245018 175.107668 2.243305164 -0.03434 166 82 8506 snR19 / U1 RNA U1 yes 868 26 48 30.21084 319.52892 174.86988 2.242715012 -0.170328 166 83 6014 snR37 5_flank/snR37 no 586 29.977284 292.56282 161.270052 2.207553726 -0.0161 166 84 13204 MT_COX1 exon4/ai4 no 13084 7261 7277 40.489542 311.878528 176.184035 2.245966552 -0.013822 166 85 19815 Negative Control no 60 NA #VALUE! 46.491477 311.725378 179.1084275 2.253116021 0.008117 166 86 15627 YBR181C intron no 452 321 335 102.029226 383.004893 242.5170595 2.384742294 -0.137187 166 87 3726 Val3 ValCAC 3_flank no 273 33.010843 307.697489 170.354166 2.231352759 -0.025895 166 88 13769 MT_COB intronic no 7308 721 742 30.739581 317.510743 174.125162 2.240861533 -0.140545 166 89 12759 MT_COX1 ai1 no 13084 586 603 55.713972 306.960394 181.337183 2.258486865 0.09588 166 90 14872 MT_Ser2; Arg2 3_flank no 360 346 358 37.816043 299.986222 168.9011325 2.227632562 0.088567 166 91 6975 snR60 5_flank no 304 55.389379 293.82163 174.6055045 2.242057931 0.207388 166 92 20589 YHR021C spliced yes 40 17 36 28.268863 304.649344 166.4591035 2.221307551 -0.15839 166 93 17058 YGR214W intron no 555 301 322 34.253027 300.387778 167.3204025 2.223548901 0.048818 166 94 16019 YDL189W exon/intron no 199 41 55 72.150409 321.016638 196.5835235 2.293547115 0.077238 166 95 10969 "rRNA(18S,5.8S,25S)" 18S yes 7956 1731 1748 2435.297211 2647.747012 2541.522112 3.405093892 0.072469 166 96 6305 snR42 snR42 yes 551 306 320 62.333483 292.826059 177.579771 2.249393492 0.251223 166 97 146 Arg1 ArgACG_i 3_flank no 273 31.832575 322.487808 177.1601915 2.248366141 -0.156969 166 98 2247 Phe1 PheGAA_i 3_flank no 292 29.97092 279.04838 154.50965 2.188955609 0.049338 166 99 20916 YLR344W spliced yes 40 5 22 34.338477 290.728316 162.5333965 2.210942611 0.130625 166 100 12280 5S rRNA NTS2 no 1420 356 372 91.827312 316.556594 204.191953 2.310038623 0.231571 166 101 17521 YJL136C intron no 560 381 398 30.802852 283.95061 157.376731 2.19694052 0.067282 166 102 8507 snR19 / U1 RNA U1 yes 868 31 52 31.040645 321.985916 176.5132805 2.246777386 -0.163551 166 103 11424 "rRNA(18S,5.8S,25S)" 25S yes 7956 4006 4021 4158.795775 1757.039404 2957.91759 3.47098607 1.413501 166 104 237 Arg3 ArgCCG tRNA yes 272 41 53 50.880048 265.164962 158.022505 2.198718942 0.463627 167 2 7079 snR63 5_flank no 455 35.891125 332.660173 184.275649 2.265467949 -0.205069 167 3 562 Cys1 CysGCA 3_flank no 272 41.844804 280.396459 161.1206315 2.207151155 0.286501 167 4 11517 "rRNA(18S,5.8S,25S)" 25S yes 7956 4471 4488 49.699417 304.439857 177.069637 2.248144097 0.086933 167 5 15181 MT_COX3 cox3 no 1010 136 154 29.300062 295.356462 162.328262 2.210394139 -0.061469 167 6 5204 snR13 3_flank no 324 29.06902 298.935036 164.002028 2.214849218 -0.089807 167 7 8108 snoRNA cluster 3; 5_flank no 743 51 69 44.512886 358.761485 201.6371855 2.304570627 -0.373548 167 8 21657 copy of SH8992 no 690 34.34211 293.789241 164.0656755 2.215017731 0.104786 167 9 10246 RUF6 3_flank no 1251 32.082731 314.060198 173.0714645 2.238225469 -0.088285 167 10 8056 snoRNA cluster 2 intergenic no 739 516 535 29.886922 317.49246 173.689691 2.239774043 -0.169813 167 11 19064 YOR293W exon/intron no 537 41 60 27.768791 302.799393 165.284092 2.218231056 -0.178011 167 12 4952 snR9 snR9 yes 387 166 182 31.356096 288.842641 160.0993685 2.204389619 0.05442 167 13 12121 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7491 7513 31.247052 321.990452 176.618752 2.247036812 -0.160842 167 14 13761 MT_COB intronic no 7308 601 618 31.226299 287.322023 159.274161 2.202145326 0.059807 167 15 7279 snR65 3_flank no 300 31.307891 295.990475 163.649183 2.213913841 0.007806 167 16 18970 YOR096W intron no 501 81 100 63.796491 354.995602 209.3960465 2.320968478 -0.222477 167 17 7474 snR71 5_flank/snR71 no 290 29.934995 275.209379 152.572187 2.183475372 0.065921 167 18 8762 LSR1 / U2 RNA U2 yes 1375 451 467 59.554848 347.897245 203.7260465 2.309046557 -0.201217 167 19 6012 snR37 5_flank no 586 36.845683 296.386572 166.6161275 2.221717036 0.112169 167 20 21014 YMR033W spliced yes 40 1 17 52.760646 337.105914 194.93328 2.28988599 -0.162783 167 21 7853 snoRNA cluster1 intergenic no 1574 1061 1077 46.637712 324.918685 185.7781985 2.268994747 -0.100538 167 22 14611 MT_21S Sce1 no 4639 3376 3395 30.783527 303.182254 166.9828905 2.222671974 -0.054033 167 23 9194 snR7 U5 RNA 3_flank no 415 29.18719 307.737974 168.462582 2.226503453 -0.137097 167 24 6648 snR48 snR48 yes 313 66 83 31.736694 269.398827 150.5677605 2.177731991 0.185148 167 25 3317 Thr3 ThrTGT_i 5_flank no 272 34.231879 313.871352 174.0516155 2.240678059 -0.059951 167 26 4164 SRP 3_flank no 875 32.277397 299.927773 166.102585 2.220376391 0.015321 167 27 16605 YFL034C exon/intron no 214 41 58 32.413425 279.798548 156.1059865 2.193419558 0.147622 167 28 6841 snR52 3_flank no 292 32.484864 293.100647 162.7927555 2.211635074 0.064406 167 29 13917 MT_COB bi3 no 7308 2941 2963 30.308633 306.692619 168.500626 2.226601519 -0.091462 167 30 441 Asp1 AspGTC_i tRNA yes 271 26 38 41.348523 265.91287 153.6306965 2.186477999 0.428038 167 31 11766 "rRNA(18S,5.8S,25S)" 25S yes 7956 5716 5731 551.046398 2325.406225 1438.226312 3.15782723 -1.651288 167 32 11921 "rRNA(18S,5.8S,25S)" 25S yes 7956 6491 6507 34.669477 301.000582 167.8350295 2.224882609 0.048785 167 33 1330 Ile3 IleTAT_ii tRNA/intron no 333 31 i10 32.425351 288.888462 160.6569065 2.2058994 0.089143 167 34 4503 U3b (snR17b) U3b yes 662 71 85 32.371349 297.053514 164.7124315 2.216726378 0.036086 167 35 9283 RUF1 5_flank/RUF1 no 750 30.121077 314.329381 172.225229 2.236096771 -0.143229 167 36 2901 Pro8 ProTGG_vii tRNA yes 305 27 i2 32.252081 284.581666 158.4168735 2.199801438 0.111203 167 37 13957 MT_COB bi3 no 7308 3541 3562 32.20631 305.145369 168.6758395 2.22705288 -0.018735 167 38 18760 YNL162W intron no 612 521 539 32.176638 294.596575 163.3866065 2.213216453 0.045077 167 39 21412 Ser3 spliced yes 40 25 37 38.709514 292.053926 165.38172 2.218487504 0.165576 167 40 12117 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7471 7488 38.691842 287.771039 163.2314405 2.212803813 0.205315 167 41 7781 snoRNA cluster1 intergenic no 1574 701 720 40.854969 314.380855 177.617912 2.24948676 -0.034625 167 42 15206 MT_COX3 cox3 no 1010 511 532 34.280939 297.396517 165.838728 2.219685958 0.073888 167 43 20508 YGR027C spliced yes 40 17 38 29.914614 300.899659 165.4071365 2.218554243 -0.070017 167 44 4059 SRP SRP yes 875 186 205 34.276361 316.118184 175.1972725 2.243527341 -0.077041 167 45 17304 YHR203C intron no 369 61 80 38.693664 309.691916 174.19279 2.241030175 0.001694 167 46 8126 snoRNA cluster 3; snR41 yes 743 141 157 32.222986 307.020744 169.621865 2.229481834 -0.030456 167 47 11746 "rRNA(18S,5.8S,25S)" 25S yes 7956 5616 5634 267.473037 1000.046424 633.7597305 2.80192464 -1.110602 167 48 2759 Pro5 ProTGG_iv 3_flank no 303 32.353551 286.559503 159.456527 2.202642301 0.101731 167 49 18822 YNL302C intron no 651 261 278 32.321745 288.835106 160.5784255 2.205687195 0.086141 167 50 4419 telomerase RNA telomerase yes 1501 1131 1147 32.188422 305.702903 168.9456625 2.227747046 -0.022676 167 51 9718 RUF4 RUF4 yes 988 366 380 31.960992 268.112055 150.0365235 2.176196993 0.202466 167 52 3166 Ser5 SerTGA 5_flank no 282 31.674286 289.73837 160.706328 2.206032978 0.059262 167 53 2019 Lys3 LysTTT_i tRNA-intron no 296 i4 i20 29.249992 289.33235 159.291171 2.202191705 -0.036686 167 54 11023 "rRNA(18S,5.8S,25S)" 18S yes 7956 2001 2014 151.722244 417.585245 284.6537445 2.454316901 -0.022606 167 55 1053 Gly3 GlyGCC tRNA yes 271 1 15 75.268215 348.136403 211.702309 2.325725595 -0.097887 167 56 7513 snR79 5_flank no 284 36.994761 277.801185 157.397973 2.196999135 0.273881 167 57 9557 RUF3 RUF3 yes 631 171 187 1144.492686 1810.770793 1477.63174 3.169566211 -0.306396 167 58 20695 YIL148W spliced yes 40 13 32 30.50185 291.195379 160.8486145 2.206417324 0.010641 167 59 14350 MT_ORF9; ORF10 5_flank no 578 16 42 32.462959 288.218337 160.340648 2.205043634 0.094629 167 60 3139 Ser4 SerGCT 3_flank no 301 36.475614 283.097848 159.786731 2.203540712 0.221354 167 61 9109 snR14 / U4 RNA 3_flank no 360 30.214876 294.783438 162.499157 2.210851112 -0.021778 167 62 1370 Leu1 LeuCAA_i 5_flank no 315 40.390608 292.782737 166.5866725 2.221640253 0.162493 167 63 2174 Met2 MetCAT_ii tRNA yes 272 1 13 34.193732 291.994717 163.0942245 2.212438582 0.118134 167 64 2473 Phe5 PheGAA_v 3_flank no 291 37.255378 273.977919 155.6166485 2.192056058 0.311036 167 65 17415 YIL106W 3_exon no 185 141 153 54.770043 290.011292 172.3906675 2.236513751 0.238964 167 66 10736 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 566 583 34.284263 293.335189 163.809726 2.214339684 0.10791 167 67 10704 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 406 424 30.276088 284.077888 157.176988 2.196388962 0.041292 167 68 16039 YDL191W intron no 591 241 259 1282.906797 1478.993499 1380.950148 3.140178001 0.162543 167 69 2335 Phe3 PheGAA_iii tRNA yes 291 1 15 86.741395 357.315584 222.0284895 2.346408704 -0.081829 167 70 4640 snR3 snR3 yes 395 116 134 30.701992 289.478491 160.0902415 2.20436486 0.028358 167 71 17427 YIL133C 5_exon no 390 21 37 35.077311 296.176534 165.6269225 2.219130932 0.093556 167 72 7115 snR63 snR63 yes 455 81 102 33.184673 312.804054 172.9943635 2.238031953 -0.064398 167 73 3360 Thr3 ThrTGT_i 3_flank no 272 61.173107 305.571275 183.372191 2.263333474 0.136357 167 74 12065 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7211 7231 31.481906 331.067059 181.2744825 2.258336674 -0.226442 167 75 16132 YDR064W intron no 639 561 580 33.841518 296.913054 165.377286 2.21847586 0.072567 167 76 2968 Ser1 SerAGA_i tRNA yes 283 62 74 53.648082 308.569445 181.1087635 2.257939465 0.071133 167 77 1579 Leu4 LeuCAA_iv intron/tRNA no 314 i28 e2 38.641243 294.91638 166.7788115 2.222140875 0.138163 167 78 20503 YGR001C spliced yes 40 25 40 54.28182 285.909689 170.0957545 2.230693474 0.274366 167 79 1835 Leu9 LeuTAG_ii 5_flank no 301 43.430991 285.187063 164.309027 2.215661424 0.242564 167 80 1242 Ile2 IleTAT_i 5_flank no 333 40.191234 276.565542 158.378388 2.199695918 0.319213 167 81 821 Glu1 GluCTC 3_flank no 272 32.427573 292.952965 162.690269 2.211361577 0.06349 167 82 7116 snR63 snR63 yes 455 86 108 30.090053 310.723933 170.406993 2.231487413 -0.123064 167 83 487 Asp2 AspGTC_ii 5_flank/tRNA no 272 34.2073 302.582112 168.394706 2.226328434 0.030277 167 84 9898 RUF5-1 RUF5-1 yes 975 296 310 42.51876 282.802082 162.660421 2.211281892 0.26409 167 85 11694 "rRNA(18S,5.8S,25S)" 25S yes 7956 5356 5371 1488.757588 5693.870848 3591.314218 3.555253405 -1.793131 167 86 2934 Ser1 SerAGA_i 5_flank no 283 31.127353 322.966132 177.0467425 2.248087941 -0.169908 167 87 10518 RUF8 RUF8 yes 1151 516 534 30.914004 298.532446 164.723225 2.216754836 -0.02116 167 88 563 Cys1 CysGCA 3_flank no 272 51.763541 293.17228 172.4679105 2.236708302 0.196481 167 89 7437 snR69 snR69 yes 301 86 100 45.319997 284.505827 164.912912 2.21725466 0.254037 167 90 5663 snR34 snR34 yes 750 236 251 43.1256 292.837276 167.981438 2.225261295 0.167955 167 91 96 Ala2 AlaTGC 3_flank no 273 32.599325 294.796835 163.69808 2.214043586 0.057454 167 92 6081 snR37 snR37 yes 586 321 337 36.57553 292.224526 164.400028 2.215901887 0.144072 167 93 1602 Leu4 LeuCAA_iv 3_flank no 314 30.180961 286.183383 158.182172 2.199157535 0.026569 167 94 17392 YIL069C intron no 509 181 197 38.109656 317.569956 177.839806 2.250028976 -0.069882 167 95 12745 MT_COX1 ai1 no 13084 376 390 72.60041 338.161118 205.380764 2.312559765 -0.045707 167 96 4704 snR4 snR4 yes 386 56 74 31.677169 277.619305 154.648237 2.189344973 0.138026 167 97 1939 Lys1 LysCTT_i 3_flank no 272 55.060122 310.128245 182.5941835 2.261486939 0.065799 167 98 12269 5S rRNA NTS2 no 1420 301 318 29.845714 275.106093 152.4759035 2.183201215 0.06178 167 99 9943 RUF5-1 RUF5-1 yes 975 521 535 38.311018 274.279483 156.2952505 2.193945781 0.319887 167 100 11622 "rRNA(18S,5.8S,25S)" 25S yes 7956 4996 5014 32.475361 296.779746 164.6275535 2.216502524 0.041133 167 101 21398 Pro2_7 spliced yes 40 25 37 94.416536 330.979802 212.698169 2.327763751 0.143976 167 102 3266 Thr2 ThrCGT 5_flank no 272 30.93046 336.222364 183.576412 2.263816877 -0.271945 167 103 6057 snR37 snR37 yes 586 201 217 37.500034 295.649301 166.5746675 2.221608955 0.125613 167 104 18194 YML024W intron no 498 181 197 41.974724 306.22183 174.098277 2.240794473 0.041354 168 2 20901 YLR306W spliced yes 40 17 34 33.867218 309.576891 171.7220545 2.234826076 -0.030339 168 3 15027 MT_COX 2; ORF1 ORF1exon1 yes 2427 1006 1028 27.618422 292.878433 160.2484275 2.204793777 -0.142088 168 4 3874 RNaseP RNaseP yes 569 336 348 33.489389 300.916698 167.2030435 2.223244178 0.035135 168 5 476 Asp2 AspGTC_ii 5_flank no 272 31.243697 279.977337 155.610517 2.192038946 0.108065 168 6 21390 Phe1_5 spliced yes 40 21 35 192.073468 440.833989 316.4537285 2.500310217 0.073424 168 7 19431 YPR132W intron no 465 341 360 28.702885 297.435637 163.069261 2.212372103 -0.102805 168 8 19917 YAL003W spliced yes 40 25 40 39.985617 272.432105 156.208861 2.193705666 0.354303 168 9 8996 snR17a / U3a U3a yes 690 266 282 90.217515 371.48445 230.8509825 2.363331727 -0.147506 168 10 1452 Leu2 LeuCAA_ii tRNA/intron no 314 30 i12 27.798528 305.870606 166.834567 2.222286039 -0.189787 168 11 16088 YDR025W intron no 439 301 319 27.573571 294.533858 161.0537145 2.206970746 -0.152119 168 12 1569 Leu4 LeuCAA_iv tRNA yes 314 16 27 33.015326 291.545245 162.2802855 2.210265763 0.091116 168 13 1023 Gly2 GlyCCC_ii 3_flank no 272 32.941641 287.368425 160.155033 2.204540591 0.115351 168 14 3739 Val4 ValTAC 5_flank no 274 36.713186 319.076306 177.894746 2.250163122 -0.086513 168 15 19602 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 341 353 72.778659 360.985564 216.8821115 2.336223733 -0.201195 168 16 17888 YLR048W intron no 459 281 298 31.522507 272.862958 152.1927325 2.182393915 0.157612 168 17 5050 snR10 3_flank no 445 49.153561 287.829255 168.491408 2.226577759 0.233745 168 18 11698 "rRNA(18S,5.8S,25S)" 25S yes 7956 5376 5391 23127.00017 26274.31083 24700.6555 4.392708479 -0.981641 168 19 18854 YNR053C intron no 631 61 85 37.920206 266.390627 152.1554165 2.182287417 0.387764 168 20 1147 His1 HisGTG 5_flank no 272 29.615819 287.22696 158.4213895 2.199813818 -0.007648 168 21 8724 LSR1 / U2 RNA U2 yes 1375 261 277 38.436613 302.224377 170.330495 2.231292409 0.069285 168 22 8296 snoRNA cluster4 intergenic no 638 266 285 32.886655 286.562161 159.724408 2.203371287 0.11878 168 23 1194 Ile1 IleAAT 5_flank no 274 35.559258 322.690405 179.1248315 2.253155795 -0.120898 168 24 2397 Phe4 PheGAA_iv tRNA/intron no 291 36 i16 33.879993 317.75795 175.8189715 2.245065735 -0.094644 168 25 4484 U3b (snR17b) 5_flank no 662 32.044419 295.792728 163.9185735 2.214628166 0.033317 168 26 16970 YGR034W intron no 454 181 198 32.262567 310.177734 171.2201505 2.233554874 -0.055229 168 27 9583 RUF3 RUF3 yes 631 301 322 30.199475 296.420805 163.31014 2.213013151 -0.032509 168 28 21103 YNL050C spliced yes 40 13 34 32.456837 311.985427 172.221132 2.236086439 -0.067104 168 29 13632 MT_ATP6 ATP6 yes 980 286 305 32.467527 327.251121 179.859324 2.254932957 -0.185027 168 30 14846 MT_Asp 3_flank no 275 211 239 36.846823 321.331307 179.089065 2.253069069 -0.105858 168 31 14587 MT_21S Sce1 no 4639 3016 3032 36.789917 287.614273 162.202095 2.210056459 0.185791 168 32 587 Gln1 GlnCTG 5_flank no 272 32.323554 300.613701 166.4686275 2.221332399 0.012607 168 33 5825 snR35 snR35 yes 740 311 328 52.003223 316.460004 184.2316135 2.265364156 -0.003471 168 34 6027 snR37 snR37 yes 586 51 68 34.335061 307.453971 170.894516 2.232728126 -0.007653 168 35 7986 snoRNA cluster 2 snR57 yes 739 166 183 32.071205 306.0064 169.0388025 2.227986407 -0.028313 168 36 3652 Val2 ValAAC_ii tRNA yes 274 1 15 56.000346 319.91324 187.956793 2.274058026 -0.00959 168 37 5250 snR30 snR30 yes 801 101 113 36.314896 310.265223 173.2900595 2.238773651 -0.009266 168 38 4513 U3b (snR17b) U3b yes 662 121 138 31.974339 310.052075 171.013207 2.233029651 -0.057944 168 39 15359 YBL026W intron no 228 161 178 33.085349 295.771043 164.428196 2.215976292 0.066833 168 40 13989 MT_COB intronic no 7308 4021 4045 32.040819 319.966005 176.003412 2.245521087 -0.134868 168 41 4683 snR4 5_flank no 386 34.259893 306.770739 170.515316 2.231763394 -0.003062 168 42 16707 YGL031C intron no 556 281 297 38.666528 311.634411 175.1504695 2.243411306 -0.01584 168 43 10846 "rRNA(18S,5.8S,25S)" 18S yes 7956 1116 1133 45.283252 301.787392 173.535322 2.239387886 0.092171 168 44 18566 YNL012W 5_exon no 184 21 33 113.984541 375.134658 244.5595995 2.388384715 -0.015018 168 45 844 Glu2 GluTTC_i 5_flank/tRNA no 272 36.654194 300.211232 168.432713 2.226426444 0.078325 168 46 18407 YMR125W intron no 422 281 300 30.160168 290.6005 160.380334 2.205151114 0.002643 168 47 21271 YPL090C spliced yes 40 5 23 32.424468 315.840978 174.132723 2.240880391 -0.097871 168 48 129 Arg1 ArgACG_i tRNA yes 273 21 33 43.483967 295.579184 169.5315755 2.229250598 0.143412 168 49 8432 snoRNA cluster 5 intergenic no 586 326 343 41.216577 322.055547 181.636062 2.259202078 -0.099527 168 50 3580 Tyr2 TyrGTA_ii 3_flank no 289 32.268128 309.728197 170.9981625 2.232991444 -0.051574 168 51 10127 RUF6 RUF6 yes 1251 481 497 32.032146 306.904804 169.468475 2.229088921 -0.034983 168 52 11950 "rRNA(18S,5.8S,25S)" 25S yes 7956 6636 6649 57.689017 327.698237 192.693627 2.284867351 -0.061339 168 53 6253 snR42 snR42 yes 551 46 60 50.670464 309.968792 180.319628 2.256043003 0.044174 168 54 18956 YOL127W intron no 514 301 318 33.238064 290.04338 161.640722 2.208550782 0.107646 168 55 15918 YDL083C intron no 532 441 457 35.080299 294.771322 164.9258105 2.217288627 0.105344 168 56 16845 YGL178W intron/exon no 740 681 700 32.787514 319.300816 176.044165 2.245621635 -0.120186 168 57 162 Arg2 ArgACG_ii 5_flank no 273 88.863856 345.840581 217.3522185 2.337164077 0.007315 168 58 14407 MT_21S 21S_rRNA3 yes 4639 316 335 34.591624 302.432596 168.51211 2.226631117 0.036125 168 59 7569 snR189 5_flank no 389 30.358871 301.926441 166.142656 2.220481149 -0.060896 168 60 5200 snR13 3_flank no 324 32.321799 279.71908 156.0204395 2.193181497 0.145189 168 61 9981 RUF5-1 RUF5-1 yes 975 711 732 34.286777 333.26624 183.7765085 2.264289996 -0.21433 168 62 12283 5S rRNA NTS2 no 1420 371 388 40.366367 295.666133 168.01625 2.225351287 0.135056 168 63 20709 YJL024C spliced yes 40 17 36 30.093871 330.529385 180.311628 2.256023735 -0.241095 168 64 15007 MT_COX 2; ORF1 COX2 no 2427 706 725 28.050562 315.318039 171.6843005 2.234730583 -0.223376 168 65 4543 U3b (snR17b) U3b yes 662 271 285 38.300177 297.27441 167.7872935 2.224759069 0.115102 168 66 10106 RUF6 RUF6 yes 1251 376 394 30.174567 302.732821 166.453694 2.221293438 -0.072165 168 67 18332 YML094W 3_exon no 183 141 158 36.432045 313.173302 174.8026735 2.242548071 -0.035039 168 68 654 Gln2 GlnTTG_i tRNA yes 272 56 70 51.093237 301.438329 176.265783 2.246168015 0.119881 168 69 8240 snoRNA cluster 3; 3_flank no 743 711 728 36.753557 278.173201 157.463379 2.197179567 0.267866 168 70 20328 YER074W spliced yes 40 5 22 34.864747 310.922856 172.8938015 2.237779423 -0.029041 168 71 8431 snoRNA cluster 5 intergenic no 586 321 337 105.21648 392.486177 248.8513285 2.395939964 -0.169566 168 72 2526 Pro1 ProAGG 3_flank no 272 33.166121 288.246812 160.7064665 2.206033352 0.116824 168 73 17772 YKL180W intron no 406 101 117 31.247755 304.642817 167.945286 2.225167818 -0.047251 168 74 19920 YAL030W spliced yes 40 9 26 33.576723 302.12895 167.8528365 2.224928685 0.026277 168 75 8495 snR19 / U1 RNA 5_flank no 868 41.325087 297.612727 169.468907 2.229090028 0.118864 168 76 17717 YKL081W intron no 426 341 358 31.837747 292.85951 162.3486285 2.210448624 0.04491 168 77 9011 snR17a / U3a U3a yes 690 341 359 32.02676 314.891389 173.4590745 2.239197025 -0.09554 168 78 21700 copy of SH10875 no 7956 5610.421225 8666.264179 7138.342702 3.853597394 -0.86589 168 79 452 Asp1 AspGTC_i 3_flank no 271 63.190593 313.106615 188.148604 2.274501 0.086342 168 80 13914 MT_COB bi3 no 7308 2896 2920 27.954745 322.510481 175.232613 2.243614937 -0.268475 168 81 13061 MT_COX1 intronic no 13084 5116 5138 30.086104 314.589339 172.3377215 2.236380347 -0.145964 168 82 19433 YPR132W intron no 465 381 400 29.934477 300.226381 165.080429 2.217695589 -0.0652 168 83 17518 YJL136C intron no 560 321 338 31.869855 300.508321 166.189088 2.220602505 -0.001508 168 84 17499 YJL041W intron/exon no 218 161 181 31.587736 309.916264 170.752 2.232365799 -0.06755 168 85 19972 YBL072C spliced yes 40 21 40 29.188422 307.346625 168.2675235 2.226000303 -0.13471 168 86 2828 Pro7 ProTGG_vi 5_flank no 303 39.539819 299.885637 169.712728 2.229714414 0.093574 168 87 15323 YAL003W intron no 466 261 276 43.555132 288.966089 166.2606105 2.220789371 0.206043 168 88 15090 MT_COX 2; ORF1 ORF1exon1 yes 2427 1951 1972 28.737573 315.815869 172.276721 2.236226597 -0.201014 168 89 12106 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7416 7429 74.039687 311.128364 192.5840255 2.28462026 0.165234 168 90 13893 MT_COB intronic no 7308 2581 2600 39.075847 344.434869 191.755358 2.282747508 -0.291399 168 91 18479 YMR143W intron/exon no 644 581 600 30.622615 289.482462 160.0525385 2.204262567 0.025629 168 92 9153 snR7 U5 RNA U5 yes 415 36 52 36.666035 295.289804 165.9779195 2.220050316 0.119307 168 93 16054 YDL191W 3_exon no 591 541 555 38.439363 297.183049 167.811206 2.224820959 0.116292 168 94 21281 YPL129W spliced yes 40 21 38 42.180537 291.584412 166.8824745 2.222410731 0.177912 168 95 7997 snoRNA cluster 2 intergenic no 739 221 238 31.713012 327.842516 179.777764 2.254735975 -0.199225 168 96 15650 YBR189W intron no 513 141 162 29.544459 323.930189 176.737324 2.247328275 -0.218807 168 97 9414 RUF2 5_flank no 468 31.546993 298.570761 165.058877 2.217638886 -0.000231 168 98 14338 MT_VAR1 VAR1 yes 1467 1276 1295 31.701764 283.124128 157.412946 2.197040447 0.102686 168 99 10067 RUF6 RUF6 yes 1251 181 196 152.201319 402.812844 277.5070815 2.44327407 0.054707 168 100 2055 Lys4 LysTTT_ii 5_flank no 296 31.281612 289.824788 160.5532 2.205618966 0.045687 168 101 4029 SRP SRP yes 875 36 55 30.553107 302.850834 166.7019705 2.221940733 -0.059864 168 102 6250 snR42 snR42 yes 551 31 49 37.122265 306.99194 172.0571025 2.235672605 0.022375 168 103 14594 MT_21S Sce1 no 4639 3121 3145 30.974087 351.714423 191.344255 2.281815427 -0.382687 168 104 19472 ADH1 ADH1 yes 400 141 167 31.071395 321.009052 176.0402235 2.245611911 -0.155632 169 2 13033 MT_COX1 ai2 no 13084 4696 4715 31.921236 308.856437 170.3888365 2.231441137 -0.050276 169 3 5228 snR30 5_flank/snR30 no 801 39.900326 328.405924 184.153125 2.265179093 -0.15771 169 4 3680 Val2 ValAAC_ii 3_flank no 274 30.517698 280.937643 155.7276705 2.192365787 0.068444 169 5 11204 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2906 2924 59.333281 330.868665 195.100973 2.290259435 -0.075654 169 6 14149 MT_COB intronic no 7308 6421 6443 27.984878 320.238548 174.111713 2.240827988 -0.254334 169 7 18930 YOL121C intron no 490 261 280 46.205295 361.603016 203.9041555 2.309426077 -0.383745 169 8 8396 snoRNA cluster 5 snR190 yes 586 146 160 104.092182 370.041121 237.0666515 2.374870465 -0.047601 169 9 3412 Thr4 ThrTGT_ii 3_flank no 272 29.825586 321.119257 175.4724215 2.244208869 -0.192871 169 10 2220 Phe1 PheGAA_i 5_flank no 292 38.907629 312.366448 175.6370385 2.244616106 -0.021828 169 11 18723 YNL147W 5_exon no 220 1 18 32.989196 289.002788 160.995992 2.206815064 0.106416 169 12 3751 Val4 ValTAC 5_flank no 274 30.989156 293.065017 162.0270865 2.209587623 0.015408 169 13 14472 MT_21S 21S_rRNA3 yes 4639 1291 1317 30.983111 297.339129 164.16112 2.215270306 -0.011454 169 14 2402 Phe4 PheGAA_iv tRNA yes 291 43 57 1175.398727 1191.84954 1183.624134 3.073213812 0.391759 169 15 13100 MT_COX1 ai3 no 13084 5701 5727 29.46367 309.929907 169.6967885 2.229673623 -0.14032 169 16 8144 snoRNA cluster 3; intergenic no 743 231 251 27.886036 297.792812 162.839424 2.211759558 -0.149263 169 17 7388 snR68 3_flank no 336 43.660188 338.389089 191.0246385 2.281089386 -0.223973 169 18 15112 MT_COX 2; ORF1 ORF3exon3 yes 2427 2281 2307 29.680722 283.023259 156.3519905 2.194103415 0.015386 169 19 8178 snoRNA cluster 3; snR70 yes 743 401 418 43.137799 313.200714 178.1692565 2.250832768 -0.016565 169 20 16632 YFL039C 3_exon no 408 381 397 29.762818 294.323675 162.0432465 2.209630936 -0.034645 169 21 18157 YLR426W intron no 171 81 100 30.321365 305.075859 167.698612 2.224529468 -0.081292 169 22 12222 5S rRNA NTS2 no 1420 66 87 30.852943 298.281339 164.567141 2.216343124 -0.021675 169 23 2199 Met2 MetCAT_ii 3_flank no 272 35.576288 290.494379 163.0353335 2.212281736 0.147278 169 24 13126 MT_COX1 ai3 no 13084 6091 6112 29.562417 300.43117 164.9967935 2.217475504 -0.079515 169 25 18302 YML073C intron no 515 241 258 32.005327 293.921321 162.963324 2.212089874 0.043728 169 26 12898 MT_COX1 intronic no 13084 2671 2687 34.393487 293.467432 163.9304595 2.214659656 0.108113 169 27 8971 snR17a / U3a U3a yes 690 141 156 32.331141 308.893139 170.61214 2.23200993 -0.044094 169 28 18843 YNL312W exon/intron no 208 41 60 31.287643 309.685346 170.4864945 2.231689981 -0.076145 169 29 16305 YDR450W intron no 535 381 397 36.780571 288.806436 162.7935035 2.21163707 0.175464 169 30 11874 "rRNA(18S,5.8S,25S)" 25S yes 7956 6256 6272 22567.74421 20470.64491 21519.19456 4.332826012 -0.597097 169 31 15328 YAL003W intron no 466 361 380 34.445819 304.119437 169.282628 2.228612393 0.02063 169 32 15081 MT_COX 2; ORF1 ORF1exon1 yes 2427 1816 1835 32.148542 328.480876 180.314709 2.256031155 -0.198384 169 33 2918 Pro8 ProTGG_vii 3_flank no 305 32.024363 291.67348 161.8489215 2.20910981 0.058484 169 34 9902 RUF5-1 RUF5-1 yes 975 316 335 29.7389 309.317926 169.528413 2.229242496 -0.126972 169 35 16274 YDR447C intron no 414 161 173 49.115743 281.289309 165.202526 2.218016684 0.296679 169 36 18815 YNL302C intron no 651 121 138 31.735245 321.338621 176.536933 2.246835577 -0.149414 169 37 16086 YDR025W intron no 439 261 277 31.723268 313.199111 172.4611895 2.236691377 -0.086165 169 38 14562 MT_21S 21S_rRNA3 yes 4639 2641 2653 36.074278 267.731994 151.903136 2.18156674 0.340526 169 39 17454 YIL148W intron no 534 181 203 34.00329 333.36705 183.68517 2.264074095 -0.215933 169 40 8970 snR17a / U3a U3a yes 690 136 150 42.803902 289.782711 166.2933065 2.220874769 0.19657 169 41 21724 copy of SH11919 no 7956 32.057143 307.547703 169.802423 2.229943883 -0.038021 169 42 14153 MT_COB intronic no 7308 6481 6505 32.158046 302.700732 167.429389 2.223831692 -0.005491 169 43 1699 Leu6 LeuGAG tRNA yes 282 61 73 34.431951 288.264956 161.3484535 2.207764807 0.15278 169 44 4906 snR9 5_flank no 387 32.321208 290.798117 161.5596625 2.208332937 0.073653 169 45 4838 snR8 5_flank no 390 34.590648 296.741327 165.6659875 2.219233354 0.083063 169 46 17081 YHL001W 5_exon no 498 1 17 34.665738 318.268814 176.467276 2.246664182 -0.08912 169 47 10871 "rRNA(18S,5.8S,25S)" 18S yes 7956 1241 1254 22976.68802 16786.55211 19881.62007 4.29845177 -0.245483 169 48 4437 telomerase RNA telomerase yes 1501 1221 1238 32.540335 282.894203 157.717269 2.197879248 0.131444 169 49 3945 RNase MRP RNaseMRP yes 540 141 160 32.491457 285.68477 159.0881135 2.201637732 0.111801 169 50 4652 snR3 snR3 yes 395 176 193 32.353606 308.920676 170.637141 2.232073566 -0.044027 169 51 4436 telomerase RNA telomerase yes 1501 1216 1235 32.126425 303.51021 167.8183175 2.224839363 -0.011436 169 52 9122 snR14 / U4 RNA 3_flank no 360 38.316555 299.896384 169.1064695 2.228160223 0.090605 169 53 5406 snR31 snR31 yes 425 96 108 39.002919 294.909229 166.956074 2.222602224 0.139081 169 54 5035 snR10 snR10 yes 445 206 218 77.135376 344.331313 210.7333445 2.32373326 -0.059601 169 55 1734 Leu7 LeuTAA 5_flank no 284 30.942742 291.479536 161.211139 2.207395046 0.023831 169 56 1301 Ile2 IleTAT_i 3_flank no 333 32.821418 292.532126 162.676772 2.211325546 0.078743 169 57 17072 YGR225W 5_exon no 193 21 36 38.891166 263.269642 151.080404 2.179208137 0.427358 169 58 20640 YHR141C spliced yes 40 25 37 59.552629 320.20988 189.8812545 2.278482092 0.008458 169 59 7 Ala1 AlaAGC 5_flank no 273 30.355212 307.069549 168.7123805 2.227146953 -0.09212 169 60 7667 snoRNA cluster1 snR78 yes 1574 131 148 30.266156 296.272362 163.269259 2.212904422 -0.029284 169 61 16621 YFL039C intron no 408 161 178 42.509173 303.088102 172.7986375 2.237540314 0.071371 169 62 1116 Gly4 GlyTCC tRNA yes 272 57 71 45.514177 300.3394 172.9267885 2.237862276 0.106088 169 63 714 Gln3 GlnTTG_ii 3_flank no 272 32.147024 298.479512 165.313268 2.218307711 0.020007 169 64 10505 RUF8 RUF8 yes 1151 451 468 32.146292 303.838958 167.992625 2.225290216 -0.012783 169 65 12116 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7466 7484 34.225841 306.419364 170.3226025 2.231272284 -0.000642 169 66 6203 snR40 snR40 yes 297 76 94 32.246799 297.660004 164.9534015 2.217361276 0.028305 169 67 20012 YBR084C-A spliced yes 40 5 22 36.467707 300.783613 168.62566 2.226923663 0.071505 169 68 20210 YDR059C spliced yes 40 21 35 69.947578 321.045965 195.4967715 2.29113959 0.064014 169 69 19733 Negative Control no 60 NA #VALUE! 32.645014 315.371569 174.0082915 2.240569943 -0.091389 169 70 21921 copy of SH20201 no 40 34.909692 279.165888 157.03779 2.196004175 0.229263 169 71 11300 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3386 3403 39.310057 327.858417 183.584237 2.263835389 -0.155256 169 72 18858 YNR053C intron no 631 141 158 33.184123 281.554558 157.3693405 2.196920125 0.160641 169 73 17955 YLR185W intron no 459 81 97 35.489953 298.54111 167.0155315 2.22275686 0.078746 169 74 13652 MT_ATP6 ATP6 yes 980 586 605 31.418827 300.142068 165.7804475 2.219533308 -0.014146 169 75 1303 Ile2 IleTAT_i 3_flank no 333 31.598559 286.947428 159.2729935 2.202142143 0.074584 169 76 496 Asp2 AspGTC_ii tRNA yes 272 41 54 4285.918846 3904.942504 4095.430675 3.612299579 0.1337 169 77 9008 snR17a / U3a U3a yes 690 326 350 29.787611 325.693485 177.740548 2.249786515 -0.220243 169 78 7621 snR189 snR189 yes 389 176 188 147.913425 378.253158 263.0832915 2.420093267 0.162149 169 79 18692 YNL112W intron no 1102 1021 1039 30.002991 280.165923 155.084457 2.190568274 0.045678 169 80 8866 LSR1 / U2 RNA U2 yes 1375 971 988 34.374231 299.163697 166.768964 2.222115231 0.060372 169 81 4390 telomerase RNA telomerase yes 1501 986 1005 32.093952 318.163514 175.128733 2.243357406 -0.12022 169 82 18031 YLR316C intron no 168 61 79 36.244759 289.700816 162.9727875 2.212115094 0.161746 169 83 18927 YOL121C intron no 490 201 218 53.257661 320.269509 186.763585 2.271292202 -0.027373 169 84 617 Gln1 GlnCTG 3_flank no 272 37.80856 318.18574 177.99715 2.250413049 -0.076019 169 85 20626 YHR101C spliced yes 40 21 38 29.058682 292.492378 160.77553 2.20621995 -0.061347 169 86 13673 MT_ATP6 3_flank no 980 901 923 28.900298 296.388519 162.6444085 2.211239137 -0.087459 169 87 15681 YBR191W intron no 488 261 278 33.004924 305.142237 169.0735805 2.22807575 -0.00536 169 88 18001 YLR287C intron no 530 201 215 74.263722 325.837345 200.0505335 2.301139714 0.054369 169 89 6156 snR39B 3_flank no 296 30.857162 294.527614 162.692388 2.211367234 0.001785 169 90 7004 snR60 snR60/3_flank no 304 35.016158 303.339606 169.177882 2.228343584 0.033775 169 91 21301 YPL218W spliced yes 40 1 18 32.82274 308.950014 170.886377 2.232707442 -0.038301 169 92 13145 MT_COX1 intronic no 13084 6376 6395 28.480463 316.844309 172.662386 2.237197738 -0.216385 169 93 6229 snR42 5_flank no 551 30.280111 270.994449 150.63728 2.177932465 0.104284 169 94 11826 "rRNA(18S,5.8S,25S)" 25S yes 7956 6016 6029 614.977265 743.073874 679.0255695 2.831886128 0.372095 169 95 20334 YER074W-A spliced yes 40 1 18 35.705478 312.389522 174.0475 2.24066779 -0.030805 169 96 4890 snR8 3_flank no 390 39.481509 300.636881 170.059195 2.230600119 0.086449 169 97 370 Asn1 AsnGTT 5_flank no 274 181.945609 391.615992 286.7808005 2.457550073 0.262262 169 98 19014 YOR182C intron no 511 161 178 31.529362 269.541268 150.535315 2.177638396 0.17426 169 99 13121 MT_COX1 ai3 no 13084 6016 6038 27.749968 284.780858 156.265413 2.193862864 -0.097369 169 100 20871 YLR128W spliced yes 40 13 32 34.19181 289.128385 161.6600975 2.208602836 0.14249 169 101 9851 RUF5-1 RUF5-1 yes 975 61 78 30.406644 296.158467 163.2825555 2.212939789 -0.02374 169 102 16419 YER056C intron/exon no 497 441 457 66.625633 318.918858 192.7722455 2.285044506 0.06001 169 103 8976 snR17a / U3a U3a yes 690 166 183 32.978077 306.13675 169.5574135 2.229316783 -0.013739 169 104 2998 Ser2 SerAGA_ii 5_flank no 282 33.11159 288.279227 160.6954085 2.206003468 0.114898 170 2 17570 YJL189W intron no 486 401 415 34.102495 294.443795 164.273145 2.215566572 0.096386 170 3 9605 RUF3 RUF3 yes 631 411 430 31.83535 319.648818 175.742084 2.244875772 -0.13508 170 4 15631 YBR181C 3_exon no 452 401 418 31.582737 302.180051 166.881394 2.222407919 -0.021172 170 5 704 Gln3 GlnTTG_ii tRNA yes 272 51 63 46.285754 304.885677 175.5857155 2.244489182 0.067272 170 6 6597 snR47 snR47/3_flank no 299 34.857259 276.135318 155.4962885 2.191720027 0.24779 170 7 6627 snR48 5_flank no 313 36.345451 277.353334 156.8493925 2.195482841 0.270537 170 8 11028 "rRNA(18S,5.8S,25S)" 18S yes 7956 2026 2044 40790.84765 33272.06422 37031.45594 4.568570787 -0.677838 170 9 21827 copy of SH16122 no 639 41.044273 329.285356 185.1648145 2.267558464 -0.161019 170 10 19418 YPR132W intron no 465 81 102 33.08408 299.07427 166.079175 2.220315179 0.045271 170 11 3528 Tyr2 TyrGTA_ii 5_flank no 289 36.5502 288.795852 162.673026 2.211315545 0.172952 170 12 6687 snR49 5_flank no 365 34.599064 302.454232 168.526648 2.226668583 0.036037 170 13 7845 snoRNA cluster1 snR74 yes 1574 1021 1038 42.129649 310.077061 176.103355 2.24576763 0.007561 170 14 21833 copy of SH16333 no 484 51.836176 326.647041 189.2416085 2.277016631 -0.086442 170 15 7975 snoRNA cluster 2 snR57 yes 739 111 135 42.894789 330.154568 186.5246785 2.2707363 -0.16197 170 16 15184 MT_COX3 cox3 no 1010 181 201 41.546173 295.710999 168.628586 2.226931198 0.137263 170 17 14750 MT_ORF11; Leu; Gln ORF11 yes 716 136 155 34.380401 310.799931 172.590166 2.237016046 -0.033856 170 18 3641 Val2 ValAAC_ii 5_flank no 274 29.016594 295.67451 162.345552 2.210440394 -0.078008 170 19 3550 Tyr2 TyrGTA_ii tRNA yes 289 20:A 34 55.674289 327.54118 191.6077345 2.282413036 -0.072322 170 20 11434 "rRNA(18S,5.8S,25S)" 25S yes 7956 4056 4074 30.000749 317.94267 173.9717095 2.240478631 -0.168452 170 21 10639 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 81 96 105.982742 388.241402 247.112072 2.392893962 -0.140692 170 22 8062 snoRNA cluster 2 intergenic/snR61 no 739 546 565 33.05768 327.884605 180.4711425 2.256407768 -0.182347 170 23 256 Arg3 ArgCCG 3_flank no 272 65.623469 361.554271 213.58887 2.329578618 -0.255325 170 24 16888 YGL189C intron no 269 181 198 31.697743 299.899094 165.7984185 2.219580384 -0.003426 170 25 3447 Trp1 TrpCCA tRNA yes 306 i30 50 42.809566 345.791055 194.3003105 2.288473495 -0.285925 170 26 8263 snoRNA cluster4 snR67 yes 638 101 119 34.308608 309.734058 172.021333 2.235582309 -0.026232 170 27 5120 snR11 snR11 yes 458 201 215 34.423741 298.792912 166.6083265 2.221696702 0.064033 170 28 4655 snR3 snR3/3_flank no 395 34.473282 311.952867 173.2130745 2.23858067 -0.04189 170 29 18640 YNL096C 3_exon no 445 421 437 36.655908 288.47097 162.563439 2.211022878 0.17693 170 30 6285 snR42 snR42 yes 551 206 224 32.21342 297.6835 164.94846 2.217348265 0.027078 170 31 14186 MT_COB exon6 yes 7308 6976 6993 43.022592 344.871465 193.9470285 2.28768313 -0.277677 170 32 922 Glu3 GluTTC_ii 3_flank no 272 29.795255 300.136533 164.965894 2.217394165 -0.069516 170 33 7730 snoRNA cluster1 intergenic no 1574 446 465 31.799375 279.230754 155.5150645 2.191772465 0.13139 170 34 11210 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2936 2952 33.793055 311.304907 172.548981 2.236912399 -0.045003 170 35 9362 RUF1 RUF1 yes 750 386 402 31.529513 287.048006 159.2887595 2.20218513 0.071654 170 36 11463 "rRNA(18S,5.8S,25S)" 25S yes 7956 4201 4216 132.45636 404.831435 268.6438975 2.42917698 -0.066566 170 37 13258 MT_COX1 ai4 no 13084 8071 8088 37.908783 305.691247 171.800015 2.235023197 0.036153 170 38 3763 Val4 ValTAC tRNA yes 274 40 52 50.931539 298.642294 174.7869165 2.242508921 0.143702 170 39 9299 RUF1 RUF1 yes 750 71 89 31.716787 315.205258 173.4610225 2.239201902 -0.102029 170 40 10403 RUF8 5_flank no 1151 36.211916 296.451635 166.3317755 2.220975223 0.104442 170 41 11017 "rRNA(18S,5.8S,25S)" 18S yes 7956 1971 1989 2863.997376 6098.494432 4481.245904 3.651398776 -1.100386 170 42 16448 YER074W 3_exon no 566 521 536 37.672985 280.95001 159.3114975 2.20224712 0.253549 170 43 9528 RUF3 RUF3 yes 631 26 40 34.522901 306.70732 170.6151105 2.232017492 0.000615 170 44 13866 MT_COB intronic no 7308 2176 2197 32.421915 341.130287 186.776101 2.271321305 -0.28826 170 45 10762 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 696 713 42.422817 304.659802 173.5413095 2.23940287 0.056894 170 46 4692 snR4 5_flank/snR4 no 386 13 41.386728 295.245994 168.316361 2.226126333 0.141309 170 47 5081 snR11 snR11 yes 458 6 25 35.901684 302.882537 169.3921105 2.228893179 0.047843 170 48 15357 YBL026W intron no 228 121 140 30.390427 316.177694 173.2840605 2.238758616 -0.144727 170 49 18230 YML026C intron no 501 201 220 32.557181 329.64253 181.0998555 2.257918104 -0.201879 170 50 14885 MT_Ala 3_flank no 276 181 209 30.242906 307.583519 168.9132125 2.227663622 -0.09907 170 51 9055 snR17a / U3a 3_flank no 690 32.238973 319.334123 175.786548 2.244985638 -0.127429 170 52 4041 SRP SRP yes 875 96 113 33.050284 287.627313 160.3387985 2.205038625 0.117132 170 53 8895 LSR1 / U2 RNA U2 yes 1375 1116 1134 38.101696 305.104169 171.6029325 2.234524705 0.041988 170 54 13774 MT_COB intronic no 7308 796 815 31.340475 307.041082 169.1907785 2.228376689 -0.058595 170 55 4752 snR5 5_flank no 404 31.05842 310.145317 170.6018685 2.231983783 -0.086556 170 56 19120 YPL031C intron no 202 121 138 35.010869 324.82591 179.9183895 2.255075555 -0.140747 170 57 16976 YGR034W intron no 454 301 316 54.667118 323.311154 188.989136 2.27643684 -0.04409 170 58 18047 YLR333C intron no 523 221 238 32.571108 299.688881 166.1299945 2.220448051 0.026247 170 59 21571 copy of SH5386 no 425 36.577189 301.127636 168.8524125 2.22750727 0.069922 170 60 17753 YKL157W intron no 483 201 218 40.584774 314.785354 177.685064 2.249650923 -0.039097 170 61 11040 "rRNA(18S,5.8S,25S)" 18S yes 7956 2086 2101 53267.75823 19437.45206 36352.60515 4.560535539 0.541173 170 62 18049 YLR333C intron no 523 261 277 48.639107 337.120869 192.879988 2.28528717 -0.187034 170 63 18542 YMR230W intron no 510 221 238 34.221376 308.183118 171.202247 2.23350946 -0.01488 170 64 13192 MT_COX1 exon4 yes 13084 7081 7102 28.095437 298.126014 163.1107255 2.212482519 -0.139129 170 65 1185 His1 HisGTG 3_flank no 272 48.681429 291.139633 169.910531 2.230220297 0.201003 170 66 4886 snR8 3_flank no 390 32.310393 286.377626 159.3440095 2.202335741 0.101506 170 67 8235 snoRNA cluster 3; 3_flank no 743 686 703 42.766551 314.491305 178.628928 2.251951792 -0.029076 170 68 3312 Thr3 ThrTGT_i 5_flank no 272 32.578534 298.676057 165.6272955 2.21913191 0.032718 170 69 9107 snR14 / U4 RNA U4/3_flank no 360 32.747443 306.628978 169.6882105 2.22965167 -0.020615 170 70 10726 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 516 532 680.89691 927.034251 803.9655805 2.905237456 0.121939 170 71 4230 telomerase RNA telomerase yes 1501 186 203 33.088942 302.826402 167.957672 2.225199846 0.01452 170 72 18942 YOL127W 5_exon no 514 21 41 71.603877 357.560143 214.58201 2.331593309 -0.186242 170 73 9878 RUF5-1 RUF5-1 yes 975 196 210 46.179705 296.585613 171.382659 2.233966877 0.142654 170 74 11706 "rRNA(18S,5.8S,25S)" 25S yes 7956 5416 5429 111.222822 378.729386 244.976104 2.389123724 -0.052901 170 75 18187 YML024W exon/intron no 498 41 62 29.420604 331.214367 180.3174855 2.256037843 -0.264137 170 76 14897 MT_Ile tRNA yes 276 106 127 29.567107 291.979931 160.773519 2.206214518 -0.032061 170 77 13254 MT_COX1 ai4 no 13084 8011 8030 31.87055 296.236268 164.053409 2.214985259 0.024877 170 78 3038 Ser2 SerAGA_ii 3_flank no 282 31.990953 328.840605 180.415779 2.256274518 -0.203124 170 79 13872 MT_COB intronic no 7308 2266 2287 29.874368 302.237642 166.056005 2.220254585 -0.079592 170 80 5233 snR30 snR30 yes 801 16 32 32.016776 313.479079 172.7479275 2.237412846 -0.08456 170 81 8890 LSR1 / U2 RNA U2 yes 1375 1091 1103 40.563367 276.942621 158.752994 2.200721925 0.318291 170 82 6140 snR39B snR39B yes 296 41 57 38.138354 313.862724 176.000539 2.245513998 -0.037004 170 83 11899 "rRNA(18S,5.8S,25S)" 25S yes 7956 6381 6394 46985.70932 19565.38358 33275.54645 4.522125196 0.376429 170 84 7961 snoRNA cluster 2 5_flank no 739 41 57 35.419978 296.353115 165.8865465 2.219811166 0.096108 170 85 11249 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3131 3148 19344.76294 15108.80126 17226.7821 4.23620416 -0.280958 170 86 5557 snR33 snR33 yes 383 71 88 32.976288 308.709758 170.843023 2.232597247 -0.034445 170 87 430 Asp1 AspGTC_i 5_flank no 271 28.755446 316.69514 172.725293 2.237355938 -0.205484 170 88 18021 YLR306W intron no 234 81 97 32.970271 311.227457 172.098864 2.235778004 -0.054594 170 89 7649 snoRNA cluster1 5_flank no 1574 41 60 30.915641 308.133449 169.524545 2.229232587 -0.079385 170 90 18372 YMR079W intron no 256 181 200 28.826737 288.816895 158.821816 2.200910158 -0.056959 170 91 14784 MT_ORF11; Leu; Gln 3_flank no 716 646 668 28.759771 295.969214 162.3644925 2.210491059 -0.093148 170 92 9213 snR6 / U6 RNA 5_flank no 312 32.753383 313.397682 173.0755325 2.238235676 -0.0745 170 93 7677 snoRNA cluster1 snR78/intergenic no 1574 181 201 30.37791 308.971643 169.6747765 2.229617286 -0.102709 170 94 17088 YHL001W intron no 498 141 157 46.396473 289.209781 167.803127 2.22480005 0.212399 170 95 13738 MT_COB exon1 yes 7308 256 275 33.698739 347.209076 190.4539075 2.279789887 -0.330427 170 96 14396 MT_21S 21S_rRNA3 yes 4639 151 170 413.152918 528.728221 470.9405695 2.672966105 0.498293 170 97 9382 RUF1 RUF1 yes 750 486 502 87.285012 326.970465 207.1277385 2.316238263 0.128257 170 98 15517 YBR048W intron no 611 301 317 61.650181 299.654919 180.65255 2.256844096 0.188565 170 99 20378 YFL034C-A spliced yes 40 1 15 145.765378 305.142719 225.4540485 2.353058038 0.608781 170 100 19042 YOR234C intron no 627 221 238 52.526859 294.588231 173.557545 2.239443498 0.187358 170 101 16652 YFR031C intron no 247 161 179 32.35177 284.025674 158.188722 2.199175517 0.118026 170 102 20152 YDL125C spliced yes 40 5 23 30.566689 351.247022 190.9068555 2.280821524 -0.384883 170 103 5548 snR33 snR33 yes 383 26 43 32.882589 332.797124 182.8398565 2.262070872 -0.221298 170 104 8835 LSR1 / U2 RNA U2 yes 1375 816 828 35.166196 290.263572 162.714884 2.211427281 0.144441 171 2 6795 snR50 3_flank no 290 34.177214 304.108724 169.142969 2.22825395 0.017476 171 3 4570 U3b (snR17b) U3b yes 662 406 422 31.881727 288.829714 160.3557205 2.205084457 0.071862 171 4 13889 MT_COB intronic no 7308 2521 2542 31.601277 305.805903 168.70359 2.227124324 -0.04252 171 5 8482 snR19 / U1 RNA 5_flank no 868 33.257057 292.749472 163.0032645 2.212196302 0.091145 171 6 20745 YJL205C-A spliced yes 40 9 28 28.905952 313.808348 171.35715 2.23390223 -0.183173 171 7 20538 YGR183C spliced yes 40 9 26 28.497754 276.15629 152.327022 2.182776952 -0.015102 171 8 19401 YPR063C intron no 186 101 118 31.890998 280.761364 156.326181 2.194031718 0.12433 171 9 10423 RUF8 RUF8 yes 1151 41 58 33.331906 309.212983 171.2724445 2.233687496 -0.034029 171 10 19703 Negative Control no 60 NA #VALUE! 29.241763 278.557599 153.899681 2.18723772 0.013413 171 11 11118 "rRNA(18S,5.8S,25S)" 18S yes 7956 2476 2492 67.255448 323.536926 195.396187 2.290916085 0.028499 171 12 9642 RUF4 5_flank/RUF4 no 988 70.040736 332.281196 201.160966 2.303543712 -0.020258 171 13 11019 "rRNA(18S,5.8S,25S)" 18S yes 7956 1981 1998 47.872868 298.203003 173.0379355 2.238141325 0.132865 171 14 21864 copy of SH19499 no 402 42.709908 305.37235 174.041129 2.240651892 0.051446 171 15 6656 snR48 snR48/3_flank no 313 28.037515 270.710948 149.3742315 2.174275684 -0.017045 171 16 14386 MT_21S 5_flank no 4639 1 29 27.516074 293.757451 160.6367625 2.205844943 -0.151847 171 17 16029 YDL191W exon/intron no 591 41 59 28.945474 291.778098 160.361786 2.205100884 -0.064156 171 18 11129 "rRNA(18S,5.8S,25S)" 18S yes 7956 2531 2544 7200.640051 6689.320459 6944.980255 3.841671015 -0.130217 171 19 3600 Val1 ValAAC_i 5_flank/tRNA no 274 44.094487 302.688663 173.391575 2.239027992 0.080202 171 20 2316 Phe3 PheGAA_iii 5_flank no 291 44.744727 294.172899 169.458813 2.22906416 0.160564 171 21 3910 RNase MRP 5_flank no 540 33.851502 268.435625 151.1435635 2.179389657 0.269285 171 22 5800 snR35 snR35 yes 740 186 208 37.440679 317.516747 177.478713 2.249146271 -0.071031 171 23 18665 YNL112W intron no 1102 481 497 32.496861 310.145151 171.321006 2.233810616 -0.051974 171 24 17024 YGR148C intron no 479 401 418 31.697005 278.869515 155.28326 2.19112464 0.130407 171 25 3876 RNaseP RNaseP yes 569 346 360 36.228917 291.191827 163.710372 2.214076195 0.148878 171 26 1637 Leu5 LeuCAA_v tRNA-intron no 315 i13 i29 34.215749 315.378778 174.7972635 2.242534629 -0.071987 171 27 9556 RUF3 RUF3 yes 631 166 178 7541.592934 10370.92328 8956.258107 3.952126601 -0.80476 171 28 8746 LSR1 / U2 RNA U2 yes 1375 371 387 54.086079 305.346916 179.7164975 2.254587946 0.100723 171 29 10135 RUF6 RUF6 yes 1251 521 536 34.337928 285.393415 159.8656715 2.203755216 0.171398 171 30 20108 YDL064W spliced yes 40 5 21 36.444097 329.413319 182.928708 2.262281867 -0.176268 171 31 3325 Thr3 ThrTGT_i 5_flank no 272 34.130905 275.793319 154.962112 2.190225527 0.228082 171 32 246 Arg3 ArgCCG 3_flank no 272 36.109734 311.946406 174.02807 2.240619304 -0.024883 171 33 10892 "rRNA(18S,5.8S,25S)" 18S yes 7956 1346 1361 52277.57888 26382.58515 39330.08201 4.594724852 0.011356 171 34 13527 MT_COX1 intronic no 13084 12106 12134 33.563561 305.558995 169.561278 2.229326681 -0.001784 171 35 20147 YDL115C spliced yes 40 9 25 35.564614 310.957481 173.2610475 2.238700936 -0.021087 171 36 15931 YDL108W 3_exon no 181 161 177 35.521278 315.176386 175.348832 2.243902877 -0.055165 171 37 9921 RUF5-1 RUF5-1 yes 975 411 429 35.579402 305.661285 170.6203435 2.232030812 0.02154 171 38 20864 YLR093C spliced yes 40 9 28 31.458309 301.973259 166.715784 2.221976719 -0.024034 171 39 20679 YIL106W spliced yes 40 25 37 51.045451 296.808537 173.926994 2.240366991 0.16051 171 40 3885 RNaseP 3_flank no 569 38.361629 295.612021 166.986825 2.222682207 0.130917 171 41 15823 YDL064W intron no 210 101 117 36.442453 302.7556 169.5990265 2.229423355 0.055069 171 42 1530 Leu3 LeuCAA_iii 3_flank no 314 36.655554 305.082331 170.8689425 2.232663132 0.038563 171 43 16513 YER117W intron no 571 441 457 32.416691 307.57259 169.9946405 2.230435229 -0.032412 171 44 9688 RUF4 RUF4 yes 988 216 232 34.712627 289.279261 161.995944 2.209504141 0.147461 171 45 19473 ADH1 ADH1 yes 400 161 183 30.356733 325.656255 178.006494 2.250435846 -0.200787 171 46 16997 YGR118W intron no 420 281 299 32.595247 280.177273 156.38626 2.194198594 0.150973 171 47 14204 MT_COB 3_flank no 7308 7246 7274 32.618637 314.546062 173.5823495 2.239505562 -0.085246 171 48 12368 5S rRNA NTS2 no 1420 796 812 32.62784 280.12749 156.377665 2.194174724 0.152344 171 49 747 Gln4 GlnTTG_iii tRNA yes 272 6 23 37.025988 300.304509 168.6652485 2.227025611 0.081736 171 50 18196 YML024W intron no 498 221 236 36.929562 307.942178 172.43587 2.236627613 0.013265 171 51 20873 YLR185W spliced yes 40 1 20 43.345775 339.279522 191.3126485 2.281743684 -0.232685 171 52 10780 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 786 806 32.116498 297.417636 164.767067 2.216870411 0.025577 171 53 1269 Ile2 IleTAT_i intron yes 333 i4 i20 29.667607 289.301669 159.484638 2.202718857 -0.014518 171 54 11841 "rRNA(18S,5.8S,25S)" 25S yes 7956 6091 6104 149.437107 422.021231 285.729169 2.455954578 -0.056827 171 55 21580 copy of SH5869 no 740 54.60843 322.332971 188.4707005 2.275243845 -0.036565 171 56 10102 RUF6 RUF6 yes 1251 356 374 30.955815 281.817055 156.386435 2.19419908 0.086341 171 57 20696 YIL148W spliced yes 40 17 36 32.830519 315.198768 174.0146435 2.240585796 -0.087688 171 58 1838 Leu9 LeuTAG_ii 5_flank no 301 32.649557 287.737144 160.1933505 2.204644485 0.10369 171 59 5294 snR30 snR30 yes 801 321 333 17820.30717 18357.64194 18088.97455 4.257413948 -0.705112 171 60 343 Arg5 ArgTCT tRNA yes 272 51 63 42.69799 301.18315 171.94057 2.235378362 0.089296 171 61 9911 RUF5-1 RUF5-1 yes 975 361 378 34.33982 301.591139 167.9654795 2.225220034 0.039985 171 62 14630 MT_21S Sce1 no 4639 3661 3683 30.17697 292.833041 161.5050055 2.208185987 -0.010867 171 63 9155 snR7 U5 RNA U5 yes 415 46 62 38.354367 289.92774 164.1410535 2.215217217 0.183236 171 64 21060 YMR194W spliced yes 40 17 33 34.275034 318.885522 176.580278 2.246942196 -0.098598 171 65 11679 "rRNA(18S,5.8S,25S)" 25S yes 7956 5281 5294 92.985073 338.3445 215.6647865 2.33377924 0.084482 171 66 21004 YML094W spliced yes 40 5 22 37.559194 302.922281 170.2407375 2.231063492 0.060731 171 67 8919 LSR1 / U2 RNA 3_flank no 1375 36.691046 293.449229 165.0701375 2.217668513 0.135042 171 68 5013 snR10 snR10 yes 445 96 117 32.717587 320.716625 176.717106 2.247278591 -0.132004 171 69 14415 MT_21S 21S_rRNA3 yes 4639 436 457 321.159333 561.498571 441.328952 2.644762419 0.112369 171 70 8237 snoRNA cluster 3; 3_flank no 743 696 713 33.067603 282.865514 157.9665585 2.198565157 0.148415 171 71 8456 snoRNA cluster 5 snR128 yes 586 446 462 37.445069 292.918642 165.1818555 2.21796234 0.147937 171 72 8283 snoRNA cluster4 intergenic no 638 201 222 29.098512 300.846404 164.972458 2.217411445 -0.098574 171 73 4522 U3b (snR17b) U3b yes 662 166 181 33.438788 270.337736 151.888262 2.181524213 0.243475 171 74 6742 snR49 3_flank no 365 29.277321 305.26599 167.2716555 2.223422355 -0.119028 171 75 9774 RUF4 RUF4 yes 988 646 663 37.943454 324.409677 181.1765655 2.258102023 -0.12982 171 76 20521 YGR034W spliced yes 40 17 32 44.563167 298.802741 171.682954 2.234727177 0.117151 171 77 10523 RUF8 RUF8 yes 1151 541 560 31.755152 298.291683 165.0234175 2.217545577 0.008359 171 78 6585 snR47 snR47 yes 299 31 48 34.010914 310.844571 172.4277425 2.236607142 -0.038685 171 79 18485 YMR194W intron no 563 61 78 42.726881 301.307674 172.0172775 2.23557207 0.088259 171 80 685 Gln3 GlnTTG_ii 5_flank no 272 31.81473 300.353298 166.084014 2.220327833 -0.002365 171 81 15855 YDL079C 5_exon no 392 21 40 29.510268 314.209816 171.860042 2.235174914 -0.163921 171 82 11591 "rRNA(18S,5.8S,25S)" 25S yes 7956 4841 4854 33.563012 285.042672 159.302842 2.202223524 0.149826 171 83 10495 RUF8 RUF8 yes 1151 401 417 39.654486 300.489376 170.071931 2.230632643 0.088219 171 84 7037 snR62 5_flank no 300 44.642929 296.101455 170.372192 2.231398711 0.142315 171 85 20787 YKL081W spliced yes 40 9 28 46.522263 315.374761 180.948512 2.257555016 -0.022446 171 86 1552 Leu4 LeuCAA_iv 5_flank no 314 34.902687 285.986943 160.444815 2.205325687 0.178009 171 87 609 Gln1 GlnCTG 3_flank no 272 28.669306 289.554104 159.111705 2.20170213 -0.068863 171 88 18856 YNR053C intron no 631 101 118 31.890186 291.22629 161.558238 2.208329108 0.056925 171 89 20578 YHR016C spliced yes 40 1 17 44.638271 284.260758 164.4495145 2.216032596 0.254242 171 90 18690 YNL112W intron no 1102 981 999 34.155915 301.383004 167.7694595 2.224712905 0.039468 171 91 21322 YPR028W spliced yes 40 5 22 33.062902 285.722405 159.3926535 2.202468301 0.129764 171 92 4939 snR9 snR9 yes 387 101 120 30.797216 291.273907 161.0355615 2.206921792 0.020207 171 93 4233 telomerase RNA telomerase yes 1501 201 213 97.88404 329.832618 213.858329 2.330126169 0.173394 171 94 2328 Phe3 PheGAA_iii 5_flank no 291 193.399124 382.279402 287.839263 2.459150034 0.36437 171 95 10997 "rRNA(18S,5.8S,25S)" 18S yes 7956 1871 1888 56276.80753 16291.84374 36284.32564 4.559719056 0.901477 171 96 8353 snoRNA cluster4 3_flank no 638 551 570 49.567398 331.678537 190.6229675 2.280175226 -0.139293 171 97 16107 YDR064W intron no 639 61 77 43.320829 265.947298 154.6340635 2.189305168 0.437491 171 98 11878 "rRNA(18S,5.8S,25S)" 25S yes 7956 6276 6292 63.602679 281.56284 172.5827595 2.236997409 0.35874 171 99 797 Glu1 GluCTC tRNA yes 272 1 17 1531.247229 1391.264727 1461.255978 3.164726301 0.489998 171 100 10547 RUF8 RUF8 yes 1151 661 682 33.970531 302.805017 168.387774 2.226310556 0.025582 171 101 2715 Pro5 ProTGG_iv 5_flank no 303 30.220141 288.570026 159.3950835 2.202474922 0.017526 171 102 11319 "rRNA(18S,5.8S,25S)" 25S yes 7956 3481 3498 28305.99165 7822.697952 18064.3448 4.256822214 1.278971 171 103 8086 snoRNA cluster 2 3_flank no 739 666 682 34.926491 299.125314 167.0259025 2.222783827 0.067288 171 104 14769 MT_ORF11; Leu; Gln orf11/tRNALeu no 716 421 438 32.973164 343.550328 188.261746 2.274762082 -0.302815 172 2 15997 YDL137W 5_exon no 432 21 38 32.094714 325.508045 178.8013795 2.252370865 -0.17661 172 3 6467 snR45 3_flank no 372 35.931483 306.16398 171.0477315 2.233117319 0.021556 172 4 7256 snR65 snR65 yes 300 56 75 29.534562 297.546524 163.540543 2.213625435 -0.062736 172 5 2542 Pro2 ProTGG_i 5_flank no 303 31.189843 321.73614 176.4629915 2.246653637 -0.159648 172 6 16290 YDR450W intron no 535 81 100 34.703377 323.836861 179.270119 2.253507907 -0.133032 172 7 6322 snR42 3_flank no 551 32.2662 297.178071 164.7221355 2.216751964 0.031916 172 8 3130 Ser4 SerGCT tRNA yes 301 i19 53 41.328563 312.482831 176.905697 2.247741819 -0.016373 172 9 8359 snoRNA cluster4 3_flank no 638 581 599 29.49117 322.541107 176.0161385 2.245552489 -0.21278 172 10 21467 copy of SH1003 no 272 62.883553 368.343199 215.613376 2.3336757 -0.319545 172 11 1809 Leu8 LeuTAG_i tRNA yes 301 e4 57 1497.042262 2217.303234 1857.172748 3.268852302 -0.274117 172 12 1325 Ile3 IleTAT_ii tRNA yes 333 6 22 49.627132 328.486892 189.057012 2.27659279 -0.113905 172 13 13746 MT_COB exon1 yes 7308 376 393 31.260901 303.042464 167.1516825 2.223110752 -0.037114 172 14 125 Arg1 ArgACG_i tRNA yes 273 1 13 93.381502 391.751959 242.5667305 2.384831234 -0.245341 172 15 15545 YBR078W intron no 430 261 279 34.149812 326.510021 180.3299165 2.256067782 -0.158507 172 16 4823 snR5 3_flank no 404 34.754973 291.294814 163.0248935 2.212253925 0.130806 172 17 2378 Phe4 PheGAA_iv 5_flank no 291 31.358405 325.321303 178.339854 2.251248407 -0.184802 172 18 4302 telomerase RNA telomerase yes 1501 546 565 37.939536 285.270132 161.604834 2.208454347 0.218756 172 19 18161 YLR448W 5_exon no 484 1 18 50.871724 346.784504 198.828114 2.298477793 -0.246877 172 20 15064 MT_COX 2; ORF1 ORF1exon1 yes 2427 1561 1582 35.837745 324.22177 180.0297575 2.255344296 -0.133414 172 21 12580 MT_15S 15S yes 1848 451 465 91.072181 366.629005 228.850593 2.359552042 -0.111762 172 22 9045 snR17a / U3a 3_flank no 690 29.153443 328.145412 178.6494275 2.252001629 -0.256523 172 23 2820 Pro7 ProTGG_vi 5_flank no 303 31.5173 294.273704 162.895502 2.211909092 0.025477 172 24 9643 RUF4 5_flank/RUF4 no 988 46.810365 298.647157 172.728761 2.237364658 0.125586 172 25 5104 snR11 snR11 yes 458 121 139 31.857234 313.723741 172.7904875 2.23751983 -0.088557 172 26 7397 snR68 3_flank no 336 34.130572 317.533058 175.831815 2.245097459 -0.089843 172 27 937 Gly1 GlyCCC_i 5_flank no 272 34.204364 279.492917 156.8486405 2.195480759 0.205793 172 28 11885 "rRNA(18S,5.8S,25S)" 25S yes 7956 6311 6324 45.147077 307.121133 176.134105 2.245843457 0.043686 172 29 11601 "rRNA(18S,5.8S,25S)" 25S yes 7956 4891 4911 1367.592121 3786.652882 2577.122502 3.411135063 -1.239642 172 30 19426 YPR132W intron no 465 241 257 29.812025 311.214175 170.5131 2.23175775 -0.13566 172 31 21009 YML124C spliced yes 40 5 24 34.012611 308.201085 171.106848 2.233267391 -0.017558 172 32 6545 snR46 3_flank no 397 31.673092 308.051853 169.8624725 2.230097441 -0.053622 172 33 614 Gln1 GlnCTG 3_flank no 272 31.477027 318.000055 174.738541 2.242388705 -0.126987 172 34 15347 YBL018C intron no 175 81 98 35.557364 305.949698 170.753531 2.232369693 0.018952 172 35 16443 YER074W intron no 566 421 437 33.316499 291.066054 162.1912765 2.210027492 0.103627 172 36 19932 YBL026W spliced yes 40 5 20 52.43902 336.303536 194.371278 2.28863209 -0.158428 172 37 7181 snR64 5_flank no 301 600.592983 2029.180905 1314.886944 3.118888413 -1.322425 172 38 1758 Leu7 LeuTAA 3_flank no 284 33.572175 302.344881 167.958528 2.22520206 0.024456 172 39 5341 snR30 snR30 yes 801 556 572 33.815865 311.315721 172.565793 2.236954712 -0.044809 172 40 20782 YKL006W spliced yes 40 13 32 31.921524 315.797294 173.859409 2.240198199 -0.104002 172 41 21238 YOR293W spliced yes 40 25 40 32.165571 283.230818 157.6981945 2.197826721 0.117158 172 42 10238 RUF6 RUF6/3_flank no 1251 30.175952 308.047242 169.111597 2.228173391 -0.104158 172 43 15845 YDL075W intron no 521 341 358 32.509923 308.932009 170.720966 2.232286859 -0.042122 172 44 10205 RUF6 RUF6 yes 1251 871 893 31.483666 323.338448 177.411057 2.248980683 -0.168042 172 45 17991 YLR287C 5_exon no 530 1 18 32.616406 295.693127 164.1547665 2.215253498 0.052412 172 46 4879 snR8 snR8/3_flank no 390 32.622201 305.535661 169.078931 2.228089493 -0.013374 172 47 8838 LSR1 / U2 RNA U2 yes 1375 831 848 45.928599 328.870509 187.399554 2.272768553 -0.136213 172 48 5857 snR35 snR35 yes 740 471 488 32.632911 310.840185 171.736548 2.234862729 -0.055776 172 49 7935 snoRNA cluster1 snR72/3_flank no 1574 1471 1492 32.62611 308.934558 170.780334 2.232437859 -0.040665 172 50 18212 YML025C exon/intron no 199 41 58 32.576602 299.573855 166.0752285 2.220304859 0.02713 172 51 17622 YJR094W exon/intron no 375 41 62 32.457461 316.773858 174.6156595 2.242083189 -0.104739 172 52 15270 MT_9S 9S yes 701 226 247 30.073496 318.829764 174.45163 2.241675032 -0.171053 172 53 15654 YBR189W intron no 513 221 238 38.505597 311.234396 174.8699965 2.242715301 -0.012632 172 54 2860 Pro7 ProTGG_vi 3_flank no 303 38.138923 311.680614 174.9097685 2.242814065 -0.017509 172 55 4386 telomerase RNA telomerase yes 1501 966 985 32.442215 287.81303 160.1276225 2.204466255 0.096552 172 56 13579 MT_COX1 exon6 yes 13084 12886 12908 31.096859 318.26023 174.6785445 2.242239565 -0.134039 172 57 11575 "rRNA(18S,5.8S,25S)" 25S yes 7956 4761 4778 37.140252 302.086016 169.613134 2.229459479 0.067431 172 58 14134 MT_COB intronic no 7308 6196 6220 30.653065 286.147776 158.4004205 2.19975633 0.048 172 59 16487 YER102W intron no 460 381 403 30.485083 305.932343 168.208713 2.225848488 -0.080831 172 60 12865 MT_COX1 ai1 no 13084 2176 2198 30.34735 332.202244 181.274797 2.258337427 -0.250099 172 61 21155 YNL265C spliced yes 40 17 34 36.40568 286.587581 161.4966305 2.208163466 0.190282 172 62 17709 YKL081W intron no 426 181 198 34.277978 327.218764 180.748371 2.257074392 -0.163186 172 63 16585 YFL034C intron no 421 61 77 30.166313 281.499918 155.8331155 2.192659753 0.047787 172 64 16536 YER131W intron no 461 341 360 36.363347 309.91838 173.1408635 2.238399579 -0.006019 172 65 10381 RUF7 3_flank no 700 30.297851 320.57105 175.4344505 2.244114881 -0.17332 172 66 11617 "rRNA(18S,5.8S,25S)" 25S yes 7956 4971 4986 29492.81662 19297.91729 24395.36695 4.387307355 -0.171395 172 67 16886 YGL189C intron no 269 141 162 32.678369 322.155791 177.41708 2.248995427 -0.143565 172 68 3480 Tyr1 TyrGTA_i 5_flank no 289 30.784021 321.348452 176.0662365 2.245676081 -0.162091 172 69 15657 YBR189W intron no 513 281 297 41.493754 299.150548 170.322151 2.231271133 0.104836 172 70 2649 Pro4 ProTGG_iii 5_flank no 302 33.225418 309.383898 171.304658 2.233769172 -0.03672 172 71 6492 snR46 5_flank no 397 31.225101 317.818818 174.5219595 2.241850081 -0.128905 172 72 14605 MT_21S Sce1 no 4639 3286 3305 31.297464 324.288404 177.792934 2.249914497 -0.177749 172 73 1944 Lys2 LysCTT_ii 5_flank no 273 33.471816 306.383339 169.9275775 2.230263866 -0.009575 172 74 18506 YMR194W intron no 563 481 497 59.251638 315.967253 187.6094455 2.2732547 0.040375 172 75 3552 Tyr2 TyrGTA_ii tRNA/intron no 289 29 i11 35.710157 291.039644 163.3749005 2.213185336 0.144198 172 76 1861 Leu9 LeuTAG_ii intron/tRNA no 301 i8 43 33.650837 297.101604 165.3762205 2.218473062 0.068658 172 77 18099 YLR367W intron no 583 201 215 92.862097 368.463973 230.663035 2.362978002 -0.111594 172 78 2041 Lys3 LysTTT_i 3_flank no 296 34.880824 325.875233 180.3780285 2.256183636 -0.150099 172 79 20691 YIL133C spliced yes 40 21 38 105.742286 385.024512 245.383399 2.389845178 -0.124008 172 80 19369 YPR028W intron/exon no 233 181 197 29.435101 286.598672 158.0168865 2.1987035 -0.014243 172 81 14219 MT_ATP9 ATP9 yes 431 181 197 31.408124 280.723169 156.0656465 2.193307316 0.108648 172 82 6009 snR37 5_flank no 586 31.1744 315.077079 173.1257395 2.238361641 -0.111711 172 83 14800 MT_Lys; Arg1; Gly intergenic no 682 181 202 34.077305 301.503349 167.790327 2.22476692 0.037527 172 84 13680 MT_ORF 5 5_flank no 331 46 68 28.632903 300.251507 164.442205 2.216013292 -0.119146 172 85 14294 MT_VAR1 VAR1 yes 1467 616 644 41.006696 324.516645 182.7616705 2.261885119 -0.121136 172 86 5598 snR34 5_flank no 750 53.532856 306.338652 179.935754 2.255117468 0.089278 172 87 10344 RUF7 RUF7 yes 700 331 350 30.654395 283.450992 157.0526935 2.196045389 0.063528 172 88 6360 snR43 snR43 yes 409 41 53 80.262589 339.717833 209.990211 2.32219905 -0.006748 172 89 11088 "rRNA(18S,5.8S,25S)" 18S yes 7956 2326 2342 60.539234 331.26121 195.900222 2.292034928 -0.07147 172 90 13734 MT_COB exon1 yes 7308 196 213 31.047374 311.395548 171.221461 2.233558198 -0.094335 172 91 11099 "rRNA(18S,5.8S,25S)" 18S yes 7956 2381 2396 39.500482 278.197969 158.8492255 2.200985102 0.29749 172 92 8749 LSR1 / U2 RNA U2 yes 1375 386 400 54.136551 294.770005 174.453278 2.241679134 0.193143 172 93 18792 YNL301C intron no 532 181 199 30.655185 287.855221 159.255203 2.20209363 0.037118 172 94 1693 Leu6 LeuGAG tRNA yes 282 31 43 76.944039 299.552107 188.248073 2.274730539 0.274874 172 95 12003 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6901 6921 31.92794 325.288967 178.6084535 2.25190201 -0.177104 172 96 19598 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 261 277 33.604306 318.287202 175.945754 2.245378791 -0.102139 172 97 3385 Thr4 ThrTGT_ii tRNA yes 272 11 25 39.441707 304.053933 171.74782 2.234891233 0.054778 172 98 13894 MT_COB intronic no 7308 2596 2616 186.143424 424.80473 305.474077 2.484974361 0.119188 172 99 484 Asp2 AspGTC_ii 5_flank no 272 35.682063 280.480005 158.081034 2.198879768 0.235205 172 100 13863 MT_COB bi2/intronic no 7308 2131 2157 31.946473 296.561086 164.2537795 2.215515372 0.025344 172 101 12964 MT_COX1 ai2 no 13084 3661 3683 28.159144 328.096878 178.128011 2.250732219 -0.292486 172 102 3102 Ser4 SerGCT 5_flank no 301 32.563334 311.607239 172.0852865 2.235743739 -0.062751 172 103 15622 YBR181C intron no 452 221 238 32.784015 346.390962 189.5874885 2.277809673 -0.326348 172 104 11574 "rRNA(18S,5.8S,25S)" 25S yes 7956 4756 4773 103.129986 355.380328 229.255157 2.360319114 0.037009 173 2 16111 YDR064W intron no 639 141 162 31.987745 307.833776 169.9107605 2.230220884 -0.041996 173 3 16933 YGR027C 5_exon no 412 21 35 46.013894 291.660814 168.837354 2.227468537 0.188071 173 4 4404 telomerase RNA telomerase yes 1501 1056 1072 35.434038 292.045873 163.7399555 2.214154668 0.132455 173 5 14697 MT_Thr2 5_flank no 276 31 59 29.08014 314.794112 171.937126 2.235369663 -0.182674 173 6 9755 RUF4 RUF4 yes 988 551 563 30.65473 294.169922 162.412326 2.210618986 -0.002851 173 7 11489 "rRNA(18S,5.8S,25S)" 25S yes 7956 4331 4348 98.515413 374.847958 236.6816855 2.374164653 -0.112007 173 8 12842 MT_COX1 ai1 no 13084 1831 1851 29.815062 280.392236 155.103649 2.190622015 0.034839 173 9 4942 snR9 snR9 yes 387 116 133 31.339971 291.284997 161.312484 2.207667979 0.03838 173 10 14007 MT_COB intronic no 7308 4291 4317 27.377244 315.766827 171.5720355 2.234446504 -0.255915 173 11 5167 snR13 5_flank/snR13 no 324 75.067347 366.890204 220.9787755 2.344350563 -0.223352 173 12 2312 Phe2 PheGAA_ii 3_flank no 292 31.175166 287.128487 159.1518265 2.201811627 0.059336 173 13 9319 RUF1 RUF1 yes 750 171 190 35.293869 291.664874 163.4793715 2.213462959 0.13404 173 14 5579 snR33 snR33/3_flank no 383 30.098824 341.242758 185.670791 2.268743588 -0.319859 173 15 18136 YLR406C intron no 449 101 117 36.508824 324.623887 180.5663555 2.256636832 -0.135184 173 16 5528 snR33 5_flank no 383 31.225683 313.832729 172.529206 2.236862624 -0.102709 173 17 9334 RUF1 RUF1 yes 750 246 263 33.793402 276.588717 155.1910595 2.190866698 0.212402 173 18 9066 snR14 / U4 RNA 5_flank no 360 32.261063 289.87641 161.0687365 2.207011252 0.077553 173 19 14671 MT_21S 21S_rRNA4 yes 4639 4276 4298 28.531611 316.538978 172.5352945 2.236877949 -0.212736 173 20 6681 snR49 5_flank no 365 28.842815 284.840142 156.8414785 2.195460928 -0.03763 173 21 16306 YDR450W intron no 535 401 413 35.452947 289.710456 162.5817015 2.211071664 0.152518 173 22 21245 YPL031C spliced yes 40 1 17 42.118406 271.04819 156.583298 2.194745436 0.381837 173 23 17903 YLR061W intron no 489 121 137 33.746843 308.442013 171.094428 2.233235866 -0.022737 173 24 5540 snR33 5_flank/snR33 no 383 31.729627 321.313482 176.5215545 2.246797743 -0.149294 173 25 367 Asn1 AsnGTT 5_flank no 274 31.823472 303.106321 167.4648965 2.223923785 -0.018878 173 26 12336 5S rRNA NTS2 no 1420 636 655 38.39017 313.430805 175.9104875 2.245291732 -0.032555 173 27 3747 Val4 ValTAC 5_flank no 274 38.451939 273.150506 155.8012225 2.192570861 0.331601 173 28 15033 MT_COX 2; ORF1 ORF1exon1 yes 2427 1096 1115 31.97214 322.379698 177.175919 2.248404694 -0.154329 173 29 14627 MT_21S Sce1 no 4639 3616 3635 31.965322 307.206472 169.585897 2.229389733 -0.038972 173 30 17402 YIL069C intron no 509 381 400 36.242855 293.830773 165.036814 2.217580831 0.126742 173 31 6902 snR56 3_flank no 288 31.796633 292.819787 162.30821 2.210340488 0.04381 173 32 11943 "rRNA(18S,5.8S,25S)" 25S yes 7956 6601 6619 276.835271 869.089209 572.96224 2.758126002 -0.82651 173 33 11311 "rRNA(18S,5.8S,25S)" ITS2/25S no 7956 3441 3459 191.258083 413.41387 302.3359765 2.480489829 0.197548 173 34 4841 snR8 5_flank no 390 50.518183 281.758604 166.1383935 2.220470007 0.296116 173 35 5908 snR36 5_flank/snR36 no 555 65.376507 333.715762 199.5461345 2.300043319 -0.059772 173 36 20576 YHR012W spliced yes 40 17 36 31.248175 295.160054 163.2041145 2.212731103 0.010985 173 37 5102 snR11 snR11 yes 458 111 127 85.886912 381.216129 233.5515205 2.368382699 -0.236007 173 38 21798 copy of SH14863 no 360 31.547594 308.979642 170.263618 2.231121858 -0.063305 173 39 5112 snR11 snR11 yes 458 161 183 33.946929 289.656198 161.8015635 2.208982714 0.132142 173 40 10891 "rRNA(18S,5.8S,25S)" 18S yes 7956 1341 1358 46605.90019 27684.20849 37145.05434 4.569900998 -0.209394 173 41 20694 YIL148W spliced yes 40 9 28 34.488451 297.953672 166.2210615 2.220686051 0.071761 173 42 2474 Phe5 PheGAA_v 3_flank no 291 33.595764 277.572483 155.5841235 2.191965278 0.19974 173 43 16663 YFR032C intron no 431 141 162 52.594965 386.59087 219.5929175 2.341618329 -0.512226 173 44 2581 Pro2 ProTGG_i 3_flank no 303 32.670952 298.784568 165.72776 2.21939526 0.035008 173 45 5956 snR36 snR36 yes 555 236 254 32.667223 297.26939 164.9683065 2.217400516 0.044249 173 46 9947 RUF5-1 RUF5-1 yes 975 541 556 37.067849 280.1336 158.6007245 2.200305167 0.254036 173 47 2282 Phe2 PheGAA_ii tRNA yes 292 6 22 59.280961 332.372263 195.826612 2.29187171 -0.087433 173 48 4656 snR3 3_flank no 395 34.830818 282.913774 158.872296 2.201048172 0.202347 173 49 10404 RUF8 5_flank no 1151 43.704709 285.74311 164.7239095 2.216756641 0.237695 173 50 19297 YPL198W 5_exon no 509 1 18 32.60581 308.883001 170.7444055 2.232346483 -0.04051 173 51 3758 Val4 ValTAC tRNA yes 274 16 29 32.526588 287.546004 160.036296 2.204218491 0.100973 173 52 11648 "rRNA(18S,5.8S,25S)" 25S yes 7956 5126 5144 34.560948 291.691972 163.12646 2.212524412 0.125121 173 53 14731 MT_Cys; His tRNAhis yes 456 286 307 32.12816 306.776512 169.452336 2.22904756 -0.031088 173 54 5493 snR32 snR32 yes 388 126 138 58.953088 319.600883 189.2769855 2.277097811 0.00966 173 55 16061 YDL219W intron no 171 101 117 31.5217 299.098855 165.3102775 2.218299855 -0.004322 173 56 6192 snR40 snR40 yes 297 21 35 37.577481 279.831619 158.70455 2.200589378 0.262355 173 57 9297 RUF1 RUF1 yes 750 61 79 30.946611 290.288871 160.617741 2.205793514 0.031498 173 58 5281 snR30 snR30 yes 801 256 270 55.83137 293.989197 174.9102835 2.242815344 0.208271 173 59 21562 copy of SH4992 no 445 30.508964 300.159711 165.3343375 2.218363059 -0.04494 173 60 13397 MT_COX1 intronic no 13084 10156 10180 30.344079 298.0206 164.1823395 2.21532644 -0.037431 173 61 3131 Ser4 SerGCT tRNA yes 301 42 58 36.381595 279.62942 158.0055075 2.198672225 0.25075 173 62 6701 snR49 snR49 yes 365 31 47 80.634932 350.033338 215.334135 2.33311288 -0.074398 173 63 21753 copy of SH12974 no 13084 30.152614 300.128396 165.140505 2.217853608 -0.057017 173 64 543 Cys1 CysGCA tRNA yes 272 16 29 44.618268 280.616861 162.6175645 2.211167452 0.290165 173 65 7698 snoRNA cluster1 intergenic no 1574 286 307 36.528852 297.045565 166.7872085 2.22216274 0.103104 173 66 15464 YBL087C intron no 604 441 458 34.66086 296.115609 165.3882345 2.218504611 0.089119 173 67 4223 telomerase RNA telomerase yes 1501 151 165 50.605397 306.135381 178.370389 2.251322759 0.076708 173 68 14525 MT_21S 21S_rRNA3 yes 4639 2086 2105 28.821697 312.584811 170.703254 2.2322418 -0.179028 173 69 20927 YLR367W spliced yes 40 21 37 31.098946 280.682778 155.890862 2.192820658 0.098583 173 70 18546 YMR230W intron no 510 301 321 29.117183 303.925685 166.521434 2.221470142 -0.116654 173 71 3306 Thr2 ThrCGT 3_flank no 272 31.314903 282.6925 157.0037015 2.195909891 0.092673 173 72 4096 SRP SRP yes 875 371 383 85.848321 332.981802 209.4150615 2.321007914 0.076567 173 73 6385 snR43 snR43 yes 409 166 185 31.330817 288.828458 160.0796375 2.204336092 0.053668 173 74 12924 MT_COX1 ai2 no 13084 3061 3078 31.311684 307.455593 169.3836385 2.228871458 -0.062039 173 75 13094 MT_COX1 ai3 no 13084 5611 5629 39.829232 306.436679 173.1329555 2.238379743 0.03386 173 76 5480 snR32 snR32 yes 388 61 77 54.863119 306.738465 180.800792 2.257200329 0.093185 173 77 21070 YMR225C spliced yes 40 9 23 46.342004 294.551839 170.4469215 2.231589162 0.162028 173 78 5518 snR32 3_flank no 388 33.538545 268.83999 151.1892675 2.179520963 0.256815 173 79 5879 snR35 3_flank no 740 31.392688 292.896306 162.144497 2.209902214 0.029978 173 80 291 Arg4 ArgCCT tRNA yes 272 51 63 1062.692596 905.853909 984.2732525 2.993115683 0.707006 173 81 16962 YGR034W 5_exon no 454 21 43 29.032066 314.918884 171.975475 2.235466518 -0.185131 173 82 6633 snR48 5_flank/snR48 no 313 30.929206 298.0708 164.500003 2.21616591 -0.017797 173 83 20263 YDR397C spliced yes 40 21 37 36.97108 299.977962 168.474521 2.22653423 0.08381 173 84 21240 YOR312C spliced yes 40 5 23 51.362607 319.233706 185.2981565 2.267871099 -0.029739 173 85 15847 YDL075W intron no 521 381 398 62.708625 320.368649 191.538637 2.282256393 0.025635 173 86 16445 YER074W intron no 566 461 482 30.45804 299.68632 165.07218 2.217673887 -0.043779 173 87 12915 MT_COX1 ai2 no 13084 2926 2940 204.35243 581.885329 393.1188795 2.594523901 -0.414953 173 88 16818 YGL178W intron no 740 141 157 55.940517 306.22406 181.0822885 2.257875974 0.103301 173 89 10824 "rRNA(18S,5.8S,25S)" 18S yes 7956 1006 1027 30.935465 295.180131 163.057798 2.212341573 0.000357 173 90 5004 snR10 snR10 yes 445 51 63 31.077952 263.144114 147.111033 2.167645245 0.183839 173 91 6118 snR39B 5_flank no 296 39.591174 364.636657 202.1139155 2.305596216 -0.445205 173 92 13676 MT_ATP6 3_flank no 980 946 960 37.366312 297.566267 167.4662895 2.223927398 0.108162 173 93 8129 snoRNA cluster 3; snR41 yes 743 156 173 30.808171 308.534147 169.671159 2.229608026 -0.085414 173 94 13401 MT_COX1 intronic no 13084 10216 10233 32.541107 298.479949 165.510528 2.218825624 0.032727 173 95 20824 YKR057W spliced yes 40 17 34 30.099193 294.102592 162.1008925 2.209785406 -0.021526 173 96 10362 RUF7 RUF7 yes 700 421 437 70.597612 345.333195 207.9654035 2.317991093 -0.109664 173 97 9416 RUF2 5_flank no 468 37.669473 292.119886 164.8946795 2.217206643 0.157159 173 98 14283 MT_VAR1 VAR1 yes 1467 451 475 27.594917 294.402209 160.998563 2.206822 -0.150321 173 99 13526 MT_COX1 intronic no 13084 12091 12119 29.753498 280.523549 155.1385235 2.190719654 0.031004 173 100 2491 Pro1 ProAGG 5_flank no 272 52.561133 285.600143 169.080638 2.228093878 0.269314 173 101 5443 snR31 3_flank no 425 30.263772 317.955385 174.1095785 2.240822664 -0.159411 173 102 8427 snoRNA cluster 5 intergenic no 586 301 319 30.497884 311.620933 171.0594085 2.233146966 -0.114313 173 103 11201 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2891 2909 57.127582 355.881014 206.504298 2.314929095 -0.273438 173 104 18544 YMR230W intron no 510 261 282 32.882152 365.688671 199.2854115 2.299475508 -0.477554 174 2 1613 Leu5 LeuCAA_v 5_flank no 315 31.807657 328.269788 180.0387225 2.255365923 -0.20121 174 3 975 Gly1 GlyCCC_i 3_flank no 272 29.527984 291.908301 160.7181425 2.206064904 -0.033792 174 4 7987 snoRNA cluster 2 snR57 yes 739 171 188 35.233776 301.06242 168.148098 2.225691959 0.054963 174 5 12859 MT_COX1 ai1 no 13084 2086 2108 28.926901 293.054771 160.990836 2.206801156 -0.070967 174 6 8371 snoRNA cluster 5 5_flank no 586 21 38 30.518343 278.854669 154.686506 2.18945243 0.078387 174 7 21528 copy of SH3563 no 289 33.01199 309.605963 171.3089765 2.23378012 -0.041161 174 8 9173 snR7 U5 RNA U5 yes 415 136 150 52.625372 320.055768 186.34057 2.27030742 -0.029189 174 9 21265 YPL081W spliced yes 40 5 21 38.891918 299.38368 169.137799 2.228240675 0.096746 174 10 6965 snR60 5_flank no 304 31.19482 293.66433 162.429575 2.210665108 0.018554 174 11 7043 snR62 snR62 yes 300 6 27 31.19878 323.157647 177.1782135 2.248410318 -0.170424 174 12 5946 snR36 snR36 yes 555 186 208 31.400134 324.151875 177.7760045 2.249873141 -0.175352 174 13 15078 MT_COX 2; ORF1 ORF1exon1 yes 2427 1771 1793 35.596932 303.401749 169.4993405 2.229168013 0.04008 174 14 12828 MT_COX1 ai1 no 13084 1621 1642 28.451009 300.955125 164.703067 2.216701686 -0.132165 174 15 2982 Ser1 SerAGA_i 3_flank no 283 30.953684 287.824703 159.3891935 2.202458873 0.047432 174 16 2274 Phe2 PheGAA_ii 5_flank no 292 29.532524 310.527957 170.0302405 2.230526169 -0.141432 174 17 13125 MT_COX1 ai3 no 13084 6076 6100 31.064529 299.769238 165.4168835 2.218579834 -0.0237 174 18 13978 MT_COB intronic no 7308 3856 3882 30.495156 302.37066 166.432908 2.221239201 -0.058925 174 19 17837 YKR094C intron no 468 181 200 30.870188 306.279275 168.5747315 2.226792477 -0.069809 174 20 17899 YLR061W exon/intron no 489 41 53 37.520576 295.206179 166.3633775 2.221057729 0.129547 174 21 11374 "rRNA(18S,5.8S,25S)" 25S yes 7956 3756 3774 31.392822 319.520251 175.4565365 2.244169552 -0.139882 174 22 1126 Gly4 GlyTCC 3_flank no 272 29.414932 302.15352 165.784226 2.219543206 -0.095263 174 23 4518 U3b (snR17b) U3b yes 662 146 163 40.26632 331.108328 185.687324 2.268782258 -0.178888 174 24 14986 MT_COX 2; ORF1 COX2 no 2427 391 413 36.041272 284.164779 160.1030255 2.204399539 0.207097 174 25 9418 RUF2 5_flank no 468 52.346039 354.147633 203.246836 2.308023794 -0.292289 174 26 4708 snR4 snR4 yes 386 76 92 31.826871 294.79924 163.3130555 2.213020904 0.032398 174 27 18351 YML124C intron/exon no 398 341 357 31.864751 305.343612 168.6041815 2.226868341 -0.031064 174 28 8988 snR17a / U3a U3a yes 690 226 242 32.976594 292.614889 162.7957415 2.21164304 0.083148 174 29 19435 YPR132W 3_exon no 465 421 435 44.927386 309.641152 177.284269 2.248670201 0.020577 174 30 15352 YBL026W 5_exon no 228 21 38 31.879771 299.737498 165.8086345 2.219607143 0.003546 174 31 8123 snoRNA cluster 3; snR41 yes 743 126 146 31.808821 305.180245 168.494533 2.226585814 -0.031913 174 32 17274 YHR141C 5_exon no 541 1 20 36.004526 304.110248 170.057387 2.230595502 0.03903 174 33 20111 YDL064W spliced yes 40 17 36 65.010384 374.578537 219.7944605 2.342016743 -0.344785 174 34 15739 YCR028C exon/intron no 183 41 60 44.328738 327.903197 186.1159675 2.269783634 -0.137145 174 35 255 Arg3 ArgCCG 3_flank no 272 57.172098 338.897588 198.034843 2.296741608 -0.14952 174 36 21768 copy of SH13603 no 347 31.480485 282.154676 156.8175805 2.195394749 0.101686 174 37 15889 YDL082W intron no 465 321 342 31.603334 319.997332 175.800333 2.245019693 -0.140802 174 38 10267 RUF7 5_flank no 700 39.350687 294.058662 166.7046745 2.221947778 0.147962 174 39 5635 snR34 snR34 yes 750 96 113 32.023831 315.788986 173.9064085 2.240315586 -0.102613 174 40 20437 YGL076C spliced yes 40 21 37 56.444856 354.121154 205.283005 2.312352996 -0.265194 174 41 16397 YER056C 5_exon no 497 1 17 39.104897 293.244945 166.174921 2.220565481 0.155132 174 42 13910 MT_COB bi3 no 7308 2836 2858 30.446759 313.732737 172.089748 2.235754999 -0.128501 174 43 1007 Gly2 GlyCCC_ii tRNA yes 272 26 42 32.752069 293.918772 163.3354205 2.213080375 0.067828 174 44 9368 RUF1 RUF1 yes 750 416 433 32.767216 311.217382 171.992299 2.235509002 -0.057072 174 45 20060 YBR255C-A spliced yes 40 13 31 32.724026 312.889818 172.806922 2.237561135 -0.070863 174 46 1972 Lys2 LysCTT_ii tRNA yes 273 61 73 54.883682 322.039174 188.461428 2.275222478 -0.032713 174 47 14416 MT_21S 21S_rRNA3 yes 4639 451 470 33.71235 307.219661 170.4660055 2.231637785 -0.013347 174 48 16764 YGL087C 3_exon no 185 141 160 32.5889 326.007584 179.298242 2.253576031 -0.174073 174 49 18637 YNL096C intron no 445 361 377 35.909403 270.206513 153.057958 2.184855915 0.318804 174 50 11275 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3261 3278 34.801436 308.517362 171.659399 2.234667588 -0.010599 174 51 17132 YHR010W intron no 661 361 378 34.748426 318.452316 176.600371 2.246991612 -0.089558 174 52 13569 MT_COX1 exon6 yes 13084 12736 12752 32.415969 301.727992 167.0719805 2.222903621 0.008777 174 53 15850 YDL075W intron no 521 441 463 30.025022 299.714292 164.869657 2.217140734 -0.058903 174 54 7477 snR71 snR71 yes 290 1 20 34.09424 304.547108 169.320674 2.228709989 0.012909 174 55 12835 MT_COX1 ai1 no 13084 1726 1749 31.61611 300.847297 166.2317035 2.220713855 -0.011931 174 56 12058 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7176 7191 48.334577 311.069458 179.7020175 2.254552953 0.023225 174 57 4611 snR3 5_flank no 395 33.101506 294.366152 163.733829 2.214138418 0.076109 174 58 9056 snR17a / U3a 3_flank no 690 30.730376 313.797116 172.263746 2.236193887 -0.119196 174 59 5666 snR34 snR34 yes 750 251 268 30.498222 305.542663 168.0204425 2.225362124 -0.078034 174 60 13499 MT_COX1 intronic no 13084 11686 11707 28.254725 313.831735 171.04323 2.233105889 -0.207105 174 61 9772 RUF4 RUF4 yes 988 636 653 32.222152 299.446331 165.8342415 2.219674209 0.01649 174 62 16647 YFR031C intron no 247 61 77 50.632561 305.733713 178.183137 2.250866601 0.080306 174 63 460 Asp1 AspGTC_i 3_flank no 271 35.237473 279.440946 157.3392095 2.196836964 0.237208 174 64 4675 snR4 5_flank no 386 30.214553 292.060266 161.1374095 2.207196377 -0.004702 174 65 8726 LSR1 / U2 RNA U2 yes 1375 271 285 81.217131 327.268878 204.2430045 2.31014719 0.087401 174 66 4243 telomerase RNA telomerase yes 1501 251 267 38.900743 303.486384 171.1935635 2.233487432 0.058738 174 67 13247 MT_COX1 ai4 no 13084 7906 7926 30.808772 312.748633 171.7787025 2.234969318 -0.110374 174 68 20135 YDL083C spliced yes 40 13 29 37.347717 305.644179 171.495948 2.234253863 0.035222 174 69 11629 "rRNA(18S,5.8S,25S)" 25S yes 7956 5031 5046 7189.880141 9381.820191 8285.850166 3.918337076 -0.695925 174 70 3732 Val3 ValCAC 3_flank no 273 31.306889 298.368777 164.837833 2.217056897 -0.006963 174 71 404 Asn1 AsnGTT 3_flank no 274 29.219636 267.41581 148.317723 2.171193049 0.066594 174 72 17862 YLL050C exon/intron no 279 41 56 34.509637 293.797859 164.153748 2.215250803 0.106728 174 73 18140 YLR406C intron no 449 181 198 35.498584 318.097184 176.797884 2.247477063 -0.080997 174 74 2277 Phe2 PheGAA_ii 5_flank/tRNA no 292 29.060186 297.206585 163.1333855 2.212542849 -0.082557 174 75 1462 Leu2 LeuCAA_ii tRNA yes 314 e1 56 12231.39915 8788.412386 10509.90577 4.021598822 0.060752 174 76 16418 YER056C intron no 497 421 440 28.983023 288.463515 158.723269 2.200640599 -0.046928 174 77 12350 5S rRNA NTS2 no 1420 706 718 110.140259 343.103323 226.621791 2.355301667 0.158173 174 78 21673 copy of SH9623 no 631 31.108102 303.213373 167.1607375 2.223134279 -0.043269 174 79 17001 YGR118W intron/exon no 420 361 378 33.203268 317.363229 175.2832485 2.243740413 -0.099926 174 80 3882 RNaseP 3_flank no 569 39.463633 293.37164 166.4176365 2.22119935 0.154759 174 81 12107 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7421 7436 84.623344 330.721803 207.6725735 2.317379145 0.084773 174 82 16725 YGL033W intron no 170 81 97 64.3251 298.953658 181.639379 2.259210008 0.209649 174 83 20609 YHR079C-A spliced yes 40 1 22 32.599333 324.087451 178.343392 2.251257022 -0.159342 174 84 21452 copy of SH378 no 274 30.391847 275.976816 153.1843315 2.185214346 0.085747 174 85 8626 snR19 / U1 RNA U1 yes 868 626 640 842.841524 903.87292 873.357222 2.941191916 0.424054 174 86 12353 5S rRNA NTS2 no 1420 721 737 32.456125 289.220345 160.838235 2.206389299 0.088019 174 87 14084 MT_COB bi4 no 7308 5446 5462 36.757549 293.233054 164.9953015 2.217471577 0.137613 174 88 14751 MT_ORF11; Leu; Gln ORF11 yes 716 151 172 31.766408 326.669338 179.217873 2.253381319 -0.189669 174 89 11961 "rRNA(18S,5.8S,25S)" 25S yes 7956 6691 6706 188.086913 448.722765 318.404839 2.502979659 0.019342 174 90 18868 YNR053C intron no 631 341 358 31.095737 292.350171 161.722954 2.208771665 0.02349 174 91 15273 MT_9S 9S yes 701 271 295 26.948887 293.203106 160.0759965 2.204326214 -0.181694 174 92 16072 YDR005C 3_exon no 180 161 179 31.130105 286.97515 159.0526275 2.201540848 0.058809 174 93 13357 MT_COX1 intronic no 13084 9556 9575 30.951384 285.276992 158.114188 2.198970842 0.063724 174 94 12748 MT_COX1 ai1 no 13084 421 438 32.746616 306.864232 169.805424 2.229951559 -0.022521 174 95 13503 MT_COX1 intronic no 13084 11746 11765 32.392255 310.864983 171.628619 2.234589708 -0.059038 174 96 19642 RNA14 2.2 RNA14 2.2 yes 401 341 355 45.393162 315.051558 180.22236 2.255808672 -0.025469 174 97 17841 YKR094C intron no 468 261 278 35.954045 330.178091 183.066068 2.262607854 -0.183983 174 98 13421 MT_COX1 intronic no 13084 10516 10537 31.861493 289.689174 160.7753335 2.206219419 0.065728 174 99 5265 snR30 snR30 yes 801 176 188 36.054941 288.592873 162.323907 2.210382487 0.169041 174 100 2908 Pro8 ProTGG_vii tRNA yes 305 i25 45 152.149115 358.6447 255.3969075 2.407215634 0.296449 174 101 12789 MT_COX1 ai1 no 13084 1036 1055 30.349309 276.553388 153.4513485 2.185970709 0.080792 174 102 8674 LSR1 / U2 RNA U2 yes 1375 11 28 30.531186 307.858811 169.1949985 2.228387521 -0.090811 174 103 7652 snoRNA cluster1 5_flank no 1574 56 75 34.853495 342.697698 188.7755965 2.275945851 -0.290808 174 104 12801 MT_COX1 ai1 no 13084 1216 1235 37.062 388.590539 212.8262695 2.328025233 -0.629375 175 2 7441 snR69 3_flank no 301 35.659558 305.9008 170.780179 2.232437464 0.020536 175 3 6069 snR37 snR37 yes 586 261 279 33.344686 305.591063 169.4678745 2.229087382 -0.004752 175 4 14703 MT_Thr2 tRNA yes 276 121 138 33.033824 301.829945 167.4318845 2.223838165 0.021975 175 5 16937 YGR027C intron no 412 101 115 36.620435 261.316892 148.9686635 2.173094921 0.40087 175 6 19323 YPL218W 5_exon no 239 21 35 71.404433 370.100172 220.7523025 2.343905242 -0.270287 175 7 4430 telomerase RNA telomerase yes 1501 1186 1205 31.987441 280.578636 156.2830385 2.193911846 0.128682 175 8 6429 snR45 5_flank/snR45 no 372 41.178078 311.584229 176.3811535 2.246452178 -0.008993 175 9 7547 snR79 snR79/3_flank no 284 34.267129 291.267279 162.767204 2.211566903 0.125187 175 10 21920 copy of SH20200 no 40 33.211002 263.368096 148.289549 2.171110544 0.284428 175 11 20273 YDR447C spliced yes 40 9 26 42.695165 321.538396 182.1167805 2.260349964 -0.090099 175 12 16992 YGR118W intron no 420 181 197 119.276514 416.333913 267.8052135 2.427819027 -0.206675 175 13 20484 YGL226C-A spliced yes 40 21 37 36.816167 274.351539 155.583853 2.191964522 0.302758 175 14 11736 "rRNA(18S,5.8S,25S)" 25S yes 7956 5566 5586 30.593441 299.669777 165.131609 2.217830213 -0.039045 175 15 17980 YLR211C 3_exon no 159 121 135 45.070486 302.622762 173.846624 2.240166261 0.083918 175 16 15827 YDL064W 3_exon no 210 181 199 29.70357 270.954239 150.3289045 2.177042493 0.074612 175 17 10019 RUF6 5_flank no 1251 135.292475 514.596492 324.9444835 2.511809168 -0.545389 175 18 7573 snR189 5_flank no 389 32.727679 292.4736 162.6006395 2.211122249 0.076125 175 19 19821 Negative Control no 60 NA #VALUE! 37.332345 330.80446 184.0684025 2.264979243 -0.185844 175 20 19564 CBP1 2.2 CBP1 2.2 yes 401 381 399 31.287965 282.914278 157.1011215 2.196179285 0.090331 175 21 1421 Leu1 LeuCAA_i 3_flank no 315 35.756976 293.212509 164.4847425 2.216125619 0.126359 175 22 4032 SRP SRP yes 875 51 70 33.747306 278.485314 156.11631 2.193448278 0.198395 175 23 16235 YDR381W intron no 866 601 623 31.669863 300.147961 165.908912 2.219869715 -0.005872 175 24 11760 "rRNA(18S,5.8S,25S)" 25S yes 7956 5686 5699 34789.76389 21381.24799 28085.50594 4.448482252 -0.139226 175 25 14374 MT_ORF9; ORF10 ORF10 yes 578 376 400 31.724837 299.270323 165.49758 2.218791648 0.001331 175 26 10273 RUF7 5_flank no 700 31.747911 278.969357 155.358634 2.191335394 0.131423 175 27 21074 YMR230W spliced yes 40 1 18 33.936077 278.663226 156.2996515 2.19395801 0.203044 175 28 6830 snR52 snR52 yes 292 56 75 31.820695 298.805108 165.3129015 2.218306748 0.007345 175 29 7387 snR68 3_flank no 336 31.8595 296.509443 164.1844715 2.215332079 0.022818 175 30 8997 snR17a / U3a U3a yes 690 271 288 36.212355 294.661532 165.4369435 2.218632498 0.119416 175 31 2535 Pro2 ProTGG_i 5_flank no 303 29.717566 328.941383 179.3294745 2.253651676 -0.240971 175 32 13798 MT_COB intronic no 7308 1156 1172 31.84822 287.74684 159.79753 2.203570062 0.07768 175 33 5721 snR34 snR34 yes 750 526 546 33.965639 307.887696 170.9266675 2.232809825 -0.015616 175 34 15445 YBL087C intron no 604 61 80 33.937439 285.44484 159.6911395 2.20328082 0.158815 175 35 20295 YDR500C spliced yes 40 21 37 32.873323 270.757877 151.8156 2.1813164 0.222807 175 36 6834 snR52 snR52 yes 292 76 92 38.356649 295.971512 167.1640805 2.223142964 0.127509 175 37 21266 YPL081W spliced yes 40 9 24 40.682065 280.096741 160.389403 2.205175671 0.286916 175 38 21373 Leu8_9 spliced yes 40 5 20 36.522571 318.653227 177.587899 2.249413369 -0.083281 175 39 4756 snR5 5_flank no 404 30.162615 269.582509 149.872562 2.175722131 0.105199 175 40 16779 YGL103W intron no 611 261 277 36.972024 275.237062 156.104543 2.193415542 0.296543 175 41 8018 snoRNA cluster 2 snR55 yes 739 326 347 30.515125 276.693865 153.604495 2.186403925 0.088581 175 42 6518 snR46 snR46 yes 397 81 100 32.855865 304.122867 168.489366 2.226572496 0.001035 175 43 14125 MT_COB intron/exon5 no 7308 6061 6080 32.904834 276.559224 154.732029 2.18958022 0.184774 175 44 1540 Leu3 LeuCAA_iii 3_flank no 314 41.8012 330.156603 185.9789015 2.269463678 -0.165665 175 45 7788 snoRNA cluster1 intergenic/snR75 no 1574 736 755 37.232626 321.747842 179.490234 2.254040824 -0.108526 175 46 18837 YNL302C intron no 651 561 580 31.569061 280.867168 156.2181145 2.193731392 0.113041 175 47 5536 snR33 5_flank no 383 34.792326 297.814384 166.303355 2.220901011 0.076549 175 48 11289 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3331 3344 43.581475 280.982314 162.2818945 2.210270069 0.284382 175 49 16769 YGL103W intron no 611 61 75 297.436663 724.992305 511.214484 2.70860315 -0.427159 175 50 17127 YHR010W intron no 661 261 280 34.723447 316.418828 175.5711375 2.244453123 -0.074025 175 51 2774 Pro6 ProTGG_v 5_flank no 302 32.483953 297.767317 165.125635 2.217814501 0.035293 175 52 12910 MT_COX1 ai2 no 13084 2851 2870 32.382434 310.352928 171.367681 2.23392892 -0.055089 175 53 1659 Leu5 LeuCAA_v 3_flank no 315 30.019211 282.684916 156.3520635 2.194103617 0.034598 175 54 6073 snR37 snR37 yes 586 281 299 31.944427 303.767436 167.8559315 2.224936692 -0.018928 175 55 18547 YMR230W intron no 510 321 340 31.640419 325.557435 178.598927 2.251878845 -0.182888 175 56 16374 YER003C intron no 193 101 121 34.504374 290.890704 162.697539 2.211380984 0.131241 175 57 15841 YDL075W intron no 521 261 276 35.20944 310.277329 172.7433845 2.237401424 -0.019831 175 58 6120 snR39B 5_flank no 296 43.241931 294.07267 168.6573005 2.227005145 0.156633 175 59 19034 YOR234C intron no 627 61 82 30.456087 279.860724 155.1584055 2.190775308 0.070418 175 60 15318 YAL003W intron no 466 161 182 30.252218 307.746424 168.999321 2.22788496 -0.099723 175 61 21003 YML094W spliced yes 40 1 15 69.24824 304.682461 186.9653505 2.271761128 0.188817 175 62 12825 MT_COX1 ai1 no 13084 1576 1597 28.019337 285.781907 156.900622 2.195624665 -0.087032 175 63 3564 Tyr2 TyrGTA_ii 3_flank no 289 36.227541 306.94916 171.5883505 2.234487799 0.018624 175 64 9975 RUF5-1 RUF5-1 yes 975 681 700 30.214512 290.629716 160.422114 2.205264235 0.004337 175 65 15272 MT_9S 9S yes 701 256 280 28.34571 333.762158 181.053934 2.257807966 -0.317111 175 66 17087 YHL001W intron no 498 121 133 44.202575 267.702929 155.952752 2.192993043 0.420946 175 67 15703 YBR220C intron no 521 221 237 32.981248 303.869873 168.4255605 2.226408001 0.004669 175 68 14954 MT_Met 3_flank no 276 181 207 28.989248 305.346567 167.1679075 2.223152906 -0.12984 175 69 3122 Ser4 SerGCT tRNA yes 301 16 30 48.281334 298.165073 173.2232035 2.238606066 0.1348 175 70 13078 MT_COX1 ai3 no 13084 5371 5387 45.1834 335.486119 190.3347595 2.279518108 -0.192806 175 71 8611 snR19 / U1 RNA U1 yes 868 551 569 33.436578 327.59514 180.515859 2.256515362 -0.175446 175 72 8758 LSR1 / U2 RNA U2 yes 1375 431 447 83.456886 372.894785 228.1758355 2.358269649 -0.202543 175 73 1647 Leu5 LeuCAA_v tRNA yes 315 59 76 33.216244 295.717796 164.46702 2.216078823 0.071288 175 74 12397 5S rRNA NTS2 no 1420 941 958 30.975672 304.315878 167.645775 2.224392613 -0.054406 175 75 17601 YJL205C exon/intron no 243 41 60 30.873078 321.213313 176.0431955 2.245619243 -0.159855 175 76 8363 snoRNA cluster4 3_flank no 638 601 617 30.812961 284.48423 157.6485955 2.197690106 0.064167 175 77 12281 5S rRNA NTS2 no 1420 361 377 76.147328 331.719697 203.9335125 2.309488599 0.023636 175 78 11360 "rRNA(18S,5.8S,25S)" 25S yes 7956 3686 3704 34.977215 284.040692 159.5089535 2.202785066 0.195768 175 79 17791 YKL186C intron no 249 81 98 34.962618 309.50398 172.233299 2.23611712 -0.016577 175 80 9192 snR7 U5 RNA 3_flank no 415 28.641907 288.491327 158.566617 2.200211761 -0.065452 175 81 3935 RNase MRP RNaseMRP yes 540 91 106 45.256208 295.586453 170.4213305 2.231523952 0.149034 175 82 14932 MT_Asn tRNA yes 271 106 124 30.511239 297.631227 164.071233 2.215032442 -0.029287 175 83 4312 telomerase RNA telomerase yes 1501 596 615 30.391025 308.589715 169.49037 2.229145028 -0.099981 175 84 8019 snoRNA cluster 2 snR55 yes 739 331 348 83.090794 341.22611 212.158452 2.326660338 0.001572 175 85 6350 snR43 5_flank/snR43 no 409 48.916865 306.842159 177.879512 2.250125929 0.062286 175 86 6214 snR40 3_flank no 297 31.41415 277.447015 154.4305825 2.18873331 0.130077 175 87 16240 YDR381W intron no 866 701 717 30.532659 291.651379 161.092019 2.207074025 0.008814 175 88 16321 YDR471W intron no 484 181 196 43.288112 300.944831 172.1164715 2.235822434 0.093422 175 89 1252 Ile2 IleTAT_i 5_flank no 333 28.838179 300.526317 164.682248 2.216646787 -0.109264 175 90 13791 MT_COB intronic no 7308 1051 1075 29.000489 298.849882 163.9251855 2.214645684 -0.093095 175 91 17492 YJL041W 5_exon no 218 21 38 33.329711 307.463595 170.396653 2.23146106 -0.020035 175 92 16556 YER133W intron no 625 281 300 32.263254 308.709123 170.4861885 2.231689202 -0.043492 175 93 13523 MT_COX1 intronic no 13084 12046 12074 28.971855 285.737464 157.3546595 2.196879608 -0.034883 175 94 17674 YKL006C 3_exon no 241 221 240 30.854118 281.922068 156.388093 2.194203684 0.080821 175 95 15214 MT_COX3 cox3 no 1010 631 652 32.655199 285.835051 159.245125 2.202066146 0.116082 175 96 8241 snoRNA cluster 3; 3_flank no 743 716 735 30.325228 305.958905 168.1420665 2.225676381 -0.086481 175 97 5821 snR35 snR35 yes 740 291 307 40.419882 307.306073 173.8629775 2.240207113 0.027288 175 98 16777 YGL103W intron no 611 221 235 50.653789 298.4453 174.5495445 2.24191872 0.144101 175 99 13465 MT_COX1 intronic no 13084 11176 11188 49.735809 286.364762 168.0502855 2.225439255 0.249414 175 100 17907 YLR061W intron no 489 201 220 32.367525 283.052068 157.7097965 2.197858671 0.124857 175 101 4819 snR5 3_flank no 404 30.450703 282.347564 156.3991335 2.194234343 0.058363 175 102 15100 MT_COX 2; ORF1 ORF2exon2 yes 2427 2101 2127 30.563499 330.066192 180.3148455 2.256031484 -0.231218 175 103 9478 RUF2 RUF2 yes 468 231 247 49.59078 336.806547 193.1986635 2.286004118 -0.17887 175 104 17487 YJL024C intron no 177 101 122 32.730379 385.265765 208.998072 2.32014228 -0.623691 176 2 18061 YLR333C 3_exon no 523 501 518 33.374456 318.425696 175.900076 2.245266027 -0.106056 176 3 14489 MT_21S 21S_rRNA3 yes 4639 1546 1574 29.137435 290.561689 159.849562 2.203711451 -0.048323 176 4 16624 YFL039C intron no 408 221 243 46.725774 378.372975 212.5493745 2.327459831 -0.497773 176 5 9646 RUF4 RUF4 yes 988 6 21 40.386294 307.194117 173.7902055 2.240025297 0.028231 176 6 5421 snR31 snR31 yes 425 171 187 57.530281 308.579351 183.054816 2.262581159 0.091783 176 7 9877 RUF5-1 RUF5-1 yes 975 191 206 41.564539 320.217495 180.891017 2.257417 -0.08263 176 8 17262 YHR101C intron/exon no 187 121 140 33.620542 290.421084 162.020813 2.209570807 0.117198 176 9 16399 YER056C exon/intron no 497 41 60 33.435899 329.829008 181.6324535 2.259193449 -0.192249 176 10 6583 snR47 snR47 yes 299 21 36 42.824081 354.669059 198.74657 2.298299642 -0.352762 176 11 17347 YIL018W intron no 500 341 355 54.35416 404.542618 229.448389 2.360685013 -0.611835 176 12 6347 snR43 5_flank no 409 27.99036 276.249729 152.1200445 2.182186444 -0.043467 176 13 10018 RUF6 5_flank no 1251 1268.084448 1761.49708 1514.790764 3.180352648 -0.128978 176 14 3961 RNase MRP RNaseMRP yes 540 221 237 32.657441 297.432667 165.045054 2.217602514 0.042925 176 15 18611 YNL069C intron no 549 381 398 41.183375 312.303053 176.743214 2.247342748 -0.015295 176 16 12201 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7891 7909 31.765398 303.034659 167.4000285 2.223755528 -0.02035 176 17 16437 YER074W intron no 566 301 319 34.338764 316.36444 175.351602 2.243909738 -0.078213 176 18 13418 MT_COX1 intronic no 13084 10471 10493 30.665237 293.239352 161.9522945 2.209387105 0.003341 176 19 15176 MT_COX3 5_flank no 1010 61 89 31.024433 320.516657 175.770545 2.244946099 -0.152464 176 20 10208 RUF6 RUF6 yes 1251 886 902 39.804989 325.990155 182.897572 2.26220794 -0.137798 176 21 6320 snR42 3_flank no 551 29.339887 305.735425 167.537656 2.224112435 -0.119628 176 22 8839 LSR1 / U2 RNA U2 yes 1375 836 853 35.860181 330.153637 183.006909 2.262467486 -0.184015 176 23 14026 MT_COB exon4 yes 7308 4576 4597 31.615574 291.367503 161.4915385 2.208149772 0.047001 176 24 16035 YDL191W intron no 591 161 176 33.772372 289.478199 161.6252855 2.208509305 0.12789 176 25 11296 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3366 3387 35.92432 294.495439 165.2098795 2.218036014 0.117502 176 26 21125 YNL130C spliced yes 40 1 15 42.398982 335.076839 188.7379105 2.275859143 -0.204219 176 27 4014 SRP 5_flank no 875 31.680087 295.75794 163.7190135 2.214099119 0.021593 176 28 18555 YMR230W 3_exon no 510 481 497 55.531577 329.955899 192.743738 2.284980277 -0.092098 176 29 16063 YDL219W 3_exon no 171 141 157 33.974029 313.043075 173.508552 2.239320885 -0.056552 176 30 11697 "rRNA(18S,5.8S,25S)" 25S yes 7956 5371 5389 14979.67339 15062.87253 15021.27296 4.176706738 -0.588538 176 31 16127 YDR064W intron no 639 461 477 36.327389 326.066794 181.1970915 2.258151222 -0.14803 176 32 17950 YLR128W 3_exon no 194 161 177 36.40821 308.313406 172.360808 2.236438521 0.0086 176 33 9696 RUF4 RUF4 yes 988 256 275 32.115824 292.371466 162.243645 2.210167695 0.057061 176 34 6588 snR47 snR47 yes 299 46 67 73.054293 355.556909 214.305601 2.331033522 -0.163007 176 35 9405 RUF1 3_flank no 750 30.06636 303.223324 166.644842 2.221791876 -0.078897 176 36 2176 Met2 MetCAT_ii tRNA yes 272 11 23 52.172509 318.729029 185.450769 2.268228639 -0.021001 176 37 14503 MT_21S 21S_rRNA3 yes 4639 1756 1775 32.466164 316.013553 174.2398585 2.24114751 -0.098689 176 38 17987 YLR275W intron no 190 101 123 30.393832 306.248376 168.321104 2.226138571 -0.085862 176 39 19246 YPL129W 5_exon no 205 1 13 55.043805 317.052438 186.0481215 2.269625289 0.00855 176 40 17463 YIL148W intron no 534 361 377 67.659618 350.358905 209.0092615 2.320165531 -0.165005 176 41 20354 YER117W spliced yes 40 9 28 30.769834 305.398182 168.084008 2.225526395 -0.067905 176 42 1182 His1 HisGTG 3_flank no 272 30.831002 311.84296 171.336981 2.23385111 -0.104281 176 43 14728 MT_Cys; His intergenic no 456 241 263 28.589459 313.206483 170.897971 2.232736907 -0.191134 176 44 16678 YGL030W 5_exon no 330 21 42 32.982437 314.324795 173.653616 2.239683831 -0.078915 176 45 5606 snR34 5_flank no 750 32.84247 311.329201 172.0858355 2.235745125 -0.05701 176 46 3289 Thr2 ThrCGT tRNA yes 272 46 61 37.113901 295.20095 166.1574255 2.220519754 0.125078 176 47 12682 MT_Trp tRNA yes 274 151 168 32.539708 305.993369 169.2665385 2.228571113 -0.018122 176 48 15362 YBL027W 5_exon no 484 1 18 32.444628 286.64749 159.546059 2.202886081 0.104101 176 49 5453 snR32 5_flank no 388 38.992367 322.005749 180.499058 2.25647494 -0.106549 176 50 20668 YIL069C spliced yes 40 9 27 32.373982 318.8648 175.619391 2.244572467 -0.122064 176 51 14490 MT_21S 21S_rRNA3 yes 4639 1561 1589 30.146677 318.82052 174.4835985 2.241754609 -0.168462 176 52 13875 MT_COB intronic no 7308 2311 2333 32.249047 327.166772 179.7079095 2.254567192 -0.187185 176 53 16704 YGL031C intron no 556 221 235 45.177534 289.211287 167.1944105 2.223221754 0.208593 176 54 20924 YLR367W spliced yes 40 9 25 32.943366 315.180912 174.062139 2.240704316 -0.086127 176 55 2764 Pro6 ProTGG_v 5_flank no 302 40.160603 295.762633 167.961618 2.22521005 0.133678 176 56 9272 RUF1 5_flank no 750 29.149776 302.980856 166.065316 2.220278936 -0.109753 176 57 6449 snR45 snR45 yes 372 91 105 50.980885 302.81148 176.8961825 2.247718461 0.107342 176 58 12687 MT_Trp 3_flank no 274 226 238 41.076879 308.829251 174.953065 2.242921555 0.015017 176 59 15653 YBR189W intron no 513 201 222 30.395454 301.577504 165.986479 2.220072713 -0.057509 176 60 8568 snR19 / U1 RNA U1 yes 868 336 352 38.403677 298.395411 168.399544 2.226340911 0.104832 176 61 1764 Leu7 LeuTAA 3_flank no 284 48.506924 346.275242 197.391083 2.29532753 -0.257198 176 62 11625 "rRNA(18S,5.8S,25S)" 25S yes 7956 5011 5024 87.329235 313.702391 200.515813 2.302148627 0.225678 176 63 15334 YAL030W 5_exon no 213 21 37 70.24089 314.301612 192.271251 2.283914352 0.118128 176 64 20082 YCR097W spliced yes 40 1 25 32.290105 319.344473 175.817289 2.245061579 -0.126853 176 65 6224 snR42 5_flank no 551 43.935003 321.558705 182.746854 2.261849909 -0.086196 176 66 15450 YBL087C intron no 604 161 177 32.793163 296.22939 164.5112765 2.216195672 0.05472 176 67 21881 copy of SH18401 no 422 33.056263 299.435937 166.2461 2.220751466 0.041936 176 68 663 Gln2 GlnTTG_i 3_flank no 272 41.752134 320.952911 181.3525225 2.258523601 -0.088281 176 69 14213 MT_ATP9 5_flank/ATP9 no 431 91 113 31.276078 313.464381 172.3702295 2.23646226 -0.098863 176 70 21393 Pro2_7 spliced yes 40 5 20 37.681122 289.526996 163.604059 2.213794074 0.179321 176 71 5746 snR35 5_flank no 740 33.349731 331.282124 182.3159275 2.260824611 -0.204181 176 72 16834 YGL178W intron no 740 461 478 41.661381 306.083316 173.8723485 2.24023052 0.041528 176 73 16743 YGL076C intron no 559 281 298 33.009952 299.511041 166.2604965 2.220789073 0.040735 176 74 9163 snR7 U5 RNA U5 yes 415 86 102 34.916997 294.063393 164.490195 2.216140015 0.109354 176 75 2853 Pro7 ProTGG_vi tRNA yes 303 41 53 194.339935 541.867334 368.1036345 2.565970106 -0.323566 176 76 17054 YGR214W intron no 555 221 238 34.674187 300.803067 167.738627 2.224633084 0.050464 176 77 3171 Ser5 SerTGA 5_flank no 282 32.564516 282.944285 157.7544005 2.197981483 0.131894 176 78 14070 MT_COB bi4 no 7308 5236 5253 32.56223 317.275536 174.918883 2.242836695 -0.107315 176 79 5438 snR31 3_flank no 425 32.5635 304.869477 168.7164885 2.227157528 -0.008726 176 80 12238 5S rRNA NTS2 no 1420 146 165 28.405295 283.051679 155.728487 2.192368064 -0.052993 176 81 679 Gln3 GlnTTG_ii 5_flank no 272 28.363472 306.810804 167.587138 2.224240684 -0.162613 176 82 11094 "rRNA(18S,5.8S,25S)" 18S yes 7956 2356 2369 89.329553 322.95875 206.1441515 2.314171018 0.169717 176 83 11313 "rRNA(18S,5.8S,25S)" 25S yes 7956 3451 3468 54483.43048 18943.50851 36713.46949 4.564825428 0.611551 176 84 3235 Thr1 ThrAGT tRNA yes 273 31 48 44.751149 306.957537 175.854343 2.245153098 0.043893 176 85 17448 YIL148W intron no 534 61 80 30.331282 286.517828 158.424555 2.199822496 0.032733 176 86 14271 MT_VAR1 VAR1 yes 1467 271 295 28.368361 323.451902 175.9101315 2.245290853 -0.258504 176 87 17286 YHR141C intron no 541 241 260 30.591224 300.080123 165.3356735 2.218366569 -0.04164 176 88 4803 snR5 snR5 yes 404 186 203 34.966296 286.36152 160.663908 2.205918327 0.175529 176 89 18751 YNL162W intron no 612 341 357 41.518882 298.649736 170.084309 2.23066425 0.109573 176 90 4221 telomerase RNA telomerase yes 1501 141 155 39.616449 283.742102 161.6792755 2.208654354 0.248363 176 91 1767 Leu7 LeuTAA 3_flank no 284 29.1307 297.502505 163.3166025 2.213030337 -0.080117 176 92 18461 YMR143W intron no 644 221 238 31.27396 271.363708 151.318834 2.179892986 0.15265 176 93 21190 YOL120C spliced yes 40 9 24 33.319537 254.39374 143.8566385 2.157929908 0.337085 176 94 15349 YBL018C intron/exon no 175 121 139 33.149456 299.869966 166.509711 2.221439567 0.039522 176 95 12785 MT_COX1 ai1 no 13084 976 1000 30.832795 308.307415 169.570105 2.229349289 -0.083227 176 96 1172 His1 HisGTG 3_flank no 272 30.628132 298.230108 164.42912 2.215978733 -0.028995 176 97 17654 YJR145C 3_exon no 356 321 337 49.178533 346.441268 197.8099005 2.296248024 -0.254358 176 98 16794 YGL103W 3_exon no 611 561 573 63.686586 328.230354 195.95847 2.29216404 -0.029877 176 99 3058 Ser3 SerCGA 5_flank/tRNA no 301 30.432574 282.006518 156.219546 2.193735371 0.059047 176 100 6889 snR56 snR56/3_flank no 288 32.563625 285.308673 158.936149 2.201222686 0.116544 176 101 14886 MT_Ala 3_flank no 276 196 224 30.551701 299.780109 165.165905 2.217920401 -0.041149 176 102 8927 snR17a / U3a 5_flank no 690 34.754844 296.297673 165.5262585 2.218866899 0.088721 176 103 21075 YMR230W spliced yes 40 5 23 30.565665 342.665987 186.615826 2.270948471 -0.323772 176 104 3010 Ser2 SerAGA_ii tRNA yes 282 11 25 866.050526 698.901371 782.4759485 2.893470997 0.886128 177 2 19250 YPL129W intron no 205 81 98 33.136046 312.349792 172.742919 2.237400254 -0.061414 177 3 623 Gln2 GlnTTG_i 5_flank no 272 30.942918 319.720559 175.3317385 2.243860539 -0.147408 177 4 8936 snR17a / U3a 5_flank no 690 36.636229 299.608124 168.1221765 2.225625004 0.083091 177 5 3241 Thr1 ThrAGT tRNA/3_flank no 273 34.408878 294.604076 164.506477 2.216183002 0.098745 177 6 10685 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 311 326 30.288034 284.431617 157.3598255 2.196893865 0.040248 177 7 8721 LSR1 / U2 RNA U2 yes 1375 246 265 37.74265 298.078796 167.910723 2.225078432 0.106212 177 8 21543 copy of SH4153 no 875 29.887277 299.578531 164.732904 2.216780354 -0.06287 177 9 1582 Leu4 LeuCAA_iv tRNA yes 314 e1 56 11760.81451 9793.484368 10777.14944 4.032503905 -0.167446 177 10 14481 MT_21S 21S_rRNA3 yes 4639 1426 1443 31.610661 299.621878 165.6162695 2.219102998 -0.004596 177 11 12959 MT_COX1 ai2 no 13084 3586 3605 33.584101 300.227237 166.905669 2.222471088 0.041973 177 12 11783 "rRNA(18S,5.8S,25S)" 25S yes 7956 5801 5814 555.398392 1264.289819 909.8441055 2.958966986 -0.643762 177 13 894 Glu3 GluTTC_ii 5_flank/tRNA no 272 34.159057 333.915484 184.0372705 2.264905784 -0.220109 177 14 10470 RUF8 RUF8 yes 1151 276 295 36.58402 342.42917 189.506595 2.277624328 -0.284193 177 15 20746 YJL205C-A spliced yes 40 13 32 27.227103 288.40336 157.8152315 2.198148917 -0.143757 177 16 21257 YPL075W spliced yes 40 25 39 39.783486 287.983174 163.88333 2.21453478 0.207293 177 17 10958 "rRNA(18S,5.8S,25S)" 18S yes 7956 1676 1694 3665.757217 14544.72708 9105.24215 3.9592915 -2.247598 177 18 8242 snoRNA cluster 3; 3_flank no 743 721 739 34.735041 298.018842 166.3769415 2.221093136 0.074171 177 19 5324 snR30 snR30 yes 801 471 483 152.991285 454.067657 303.529471 2.482200865 -0.186182 177 20 2563 Pro2 ProTGG_i tRNA-intron no 303 i15 i31 108.424876 404.031969 256.2284225 2.408627303 -0.212381 177 21 8026 snoRNA cluster 2 snR55 yes 739 366 380 33.512116 290.843942 162.178029 2.209992018 0.111146 177 22 9987 RUF5-1 RUF5-1 yes 975 741 760 35.746085 309.583579 172.664832 2.23720389 -0.008036 177 23 3776 Val4 ValTAC 3_flank no 274 33.64102 292.035771 162.8383955 2.211756814 0.107625 177 24 19621 RNA14 1.1 RNA14 1.1 yes 401 321 342 30.437402 327.788664 179.113033 2.253127188 -0.215818 177 25 8116 snoRNA cluster 3; 5_flank/snR41 no 743 91 107 35.778948 280.824538 158.301743 2.199485697 0.233294 177 26 14598 MT_21S Sce1 no 4639 3181 3203 29.381759 325.48892 177.4353395 2.249040122 -0.233412 177 27 9294 RUF1 RUF1 yes 750 46 66 31.560795 297.146853 164.353824 2.215779813 0.009028 177 28 18053 YLR333C intron no 523 341 355 35.937807 311.120847 173.529327 2.239372882 -0.018062 177 29 1449 Leu2 LeuCAA_ii tRNA yes 314 16 27 33.918661 290.302651 162.110656 2.209811563 0.127167 177 30 14786 MT_ORF11; Leu; Gln 3_flank no 716 676 702 31.918968 319.320354 175.619661 2.244573134 -0.131453 177 31 15950 YDL125C 3_exon no 211 181 200 29.919917 295.564358 162.7421375 2.211500016 -0.036893 177 32 4304 telomerase RNA telomerase yes 1501 556 574 32.276991 287.388882 159.8329365 2.203666279 0.093936 177 33 4250 telomerase RNA telomerase yes 1501 286 305 32.448572 307.612606 170.030589 2.230527059 -0.032326 177 34 12861 MT_COX1 ai1 no 13084 2116 2137 30.39324 302.957463 166.6753515 2.22187138 -0.065991 177 35 17187 YHR021C intron no 650 321 338 30.520767 300.420304 165.4705355 2.218720672 -0.046134 177 36 1869 Leu9 LeuTAG_ii tRNA yes 301 58 74 37.320427 308.390761 172.855594 2.237683439 0.010159 177 37 10675 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 261 279 30.734563 287.374643 159.054603 2.201546242 0.042895 177 38 7689 snoRNA cluster1 intergenic no 1574 241 260 30.826161 313.568111 172.197136 2.236025924 -0.114602 177 39 6932 snR58 snR58 yes 296 21 38 30.909036 289.655825 160.2824305 2.204885919 0.034249 177 40 2559 Pro2 ProTGG_i tRNA/intron no 303 32 i9 39.994249 275.340433 157.667341 2.197741743 0.32815 177 41 1100 Gly4 GlyTCC 5_flank no 272 31.023137 309.516769 170.269953 2.231138016 -0.084008 177 42 14669 MT_21S 21S_rRNA4 yes 4639 4246 4270 33.276576 308.490532 170.883554 2.232700268 -0.028936 177 43 762 Gln4 GlnTTG_iii 3_flank no 272 42.228484 280.628419 161.4284515 2.207980081 0.285024 177 44 8151 snoRNA cluster 3; intergenic no 743 266 280 33.074041 284.56642 158.8202305 2.200905822 0.13758 177 45 18171 YLR448W intron no 484 201 224 30.65535 319.243222 174.949286 2.242912174 -0.153429 177 46 8462 snoRNA cluster 5 snR128/3_flank no 586 476 492 32.667557 301.337878 167.0027175 2.222723538 0.019232 177 47 913 Glu3 GluTTC_ii 3_flank no 272 36.875038 309.912416 173.393727 2.239033382 -0.00469 177 48 6362 snR43 snR43 yes 409 51 70 32.319849 310.102177 171.211013 2.233531697 -0.053893 177 49 3598 Val1 ValAAC_i 5_flank/tRNA no 274 32.221477 309.251378 170.7364275 2.23232619 -0.048365 177 50 16806 YGL137W intron no 300 201 216 32.159098 271.655124 151.907111 2.181578104 0.193778 177 51 8210 snoRNA cluster 3; snR51 yes 743 561 578 34.277737 299.984308 167.1310225 2.22305707 0.052438 177 52 8705 LSR1 / U2 RNA U2 yes 1375 166 181 34.186339 312.674161 173.43025 2.23912485 -0.051058 177 53 2762 Pro6 ProTGG_v 5_flank no 302 31.878703 302.497865 167.188284 2.22320584 -0.013367 177 54 17480 YJL001W 3_exon no 216 181 198 33.830911 315.469963 174.650437 2.242169677 -0.077385 177 55 10705 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 411 428 33.565789 283.995028 158.7804085 2.200796915 0.156692 177 56 10886 "rRNA(18S,5.8S,25S)" 18S yes 7956 1316 1329 876.167074 1392.298125 1134.2326 3.054702125 -0.234345 177 57 20898 YLR306W spliced yes 40 5 26 30.856058 304.439596 167.647827 2.224397929 -0.059195 177 58 18782 YNL265C 3_exon no 205 181 199 30.575213 311.889125 171.232169 2.233585358 -0.113253 177 59 15005 MT_COX 2; ORF1 COX2 no 2427 676 695 30.331804 280.074179 155.2029915 2.190900088 0.063049 177 60 9965 RUF5-1 RUF5-1 yes 975 631 648 32.195375 293.858327 163.026851 2.21225914 0.050305 177 61 8324 snoRNA cluster4 intergenic no 638 406 425 30.04433 290.887908 160.466119 2.205383349 -0.003196 177 62 2602 Pro3 ProTGG_ii 5_flank no 303 30.034092 297.643173 163.8386325 2.214416314 -0.04582 177 63 21328 YPR043W spliced yes 40 5 22 268.849355 517.765343 393.307349 2.594732061 0.076151 177 64 19786 Negative Control no 60 NA #VALUE! 57.193476 308.63075 182.912113 2.262242467 0.089609 177 65 6717 snR49 snR49 yes 365 111 131 32.603819 298.960983 165.782401 2.219538425 0.031773 177 66 5589 snR33 3_flank no 383 37.070073 306.613147 171.84161 2.235128333 0.025697 177 67 1289 Ile2 IleTAT_i 3_flank no 333 28.927062 315.382933 172.1549975 2.235919634 -0.191626 177 68 2273 Phe2 PheGAA_ii 5_flank no 292 33.328741 277.343843 155.336292 2.191272934 0.192925 177 69 5717 snR34 snR34 yes 750 506 522 46.206669 316.298864 181.2527665 2.258284644 -0.031841 177 70 5942 snR36 snR36 yes 555 166 182 31.262609 285.618331 158.44047 2.199866122 0.07197 177 71 2109 Met1 MetCAT_i 5_flank no 273 31.133004 290.915355 161.0241795 2.206891095 0.033799 177 72 69 Ala2 AlaTGC 5_flank no 273 30.935245 305.371014 168.1531295 2.225704954 -0.062143 177 73 12294 5S rRNA NTS2 no 1420 426 442 45.350451 293.106208 169.2283295 2.228473067 0.172443 177 74 19734 Negative Control no 60 NA #VALUE! 49.226094 303.453943 176.3400185 2.246350882 0.093145 177 75 16066 YDR005C exon/intron no 180 41 60 32.423772 312.603797 172.5137845 2.236823803 -0.07242 177 76 1850 Leu9 LeuTAG_ii 5_flank/tRNA no 301 36.450711 295.902125 166.176418 2.220569393 0.111749 177 77 17248 YHR097C intron no 224 61 77 133.463694 398.630822 266.047258 2.424958787 -0.028095 177 78 11983 "rRNA(18S,5.8S,25S)" 25S yes 7956 6801 6818 69.619516 348.458757 209.0391365 2.320227603 -0.138065 177 79 8687 LSR1 / U2 RNA U2 yes 1375 76 93 32.337418 297.634435 164.9859265 2.2174469 0.031393 177 80 3835 RNaseP RNaseP yes 569 141 153 42.68253 293.633177 168.1578535 2.225717155 0.159429 177 81 18530 YMR225C 3_exon no 247 221 233 105.343275 326.642968 215.9931215 2.334439921 0.239654 177 82 15262 MT_9S 9S yes 701 106 128 28.241814 308.788938 168.515376 2.226639534 -0.17785 177 83 12296 5S rRNA NTS2 no 1420 436 452 42.698525 273.820396 158.2594605 2.199369681 0.354654 177 84 13388 MT_COX1 exon5b/intronic no 13084 10021 10042 28.285776 312.174318 170.230047 2.231036219 -0.196208 177 85 21170 YNL312W spliced yes 40 5 22 40.790495 296.78431 168.7874025 2.22734003 0.125464 177 86 3065 Ser3 SerCGA tRNA yes 301 21 35 1514.581513 2777.840624 2146.211069 3.33167243 -0.614493 177 87 9735 RUF4 RUF4 yes 988 451 465 43.277299 291.246303 167.261801 2.223396769 0.183497 177 88 5527 snR33 5_flank no 383 44.584317 333.196625 188.890471 2.27621005 -0.178008 177 89 1810 Leu8 LeuTAG_i tRNA yes 301 48 62 33.184116 275.664477 154.4242965 2.188715632 0.199566 177 90 19006 YOR182C 5_exon no 511 1 17 79.273705 314.827383 197.050544 2.294577638 0.16859 177 91 6919 snR58 5_flank no 296 63.442474 319.364161 191.4033175 2.281949461 0.037728 177 92 1296 Ile2 IleTAT_i 3_flank no 333 33.497745 286.536658 160.0172015 2.204166671 0.138169 177 93 18149 YLR406C intron no 449 361 379 41.998842 300.85425 171.426546 2.234078075 0.090073 177 94 9133 snR7 U5 RNA 5_flank no 415 35.483895 281.957093 158.720494 2.200633007 0.219919 177 95 21756 copy of SH13181 no 13084 85.186322 314.222997 199.7046595 2.300388198 0.208367 177 96 1523 Leu3 LeuCAA_iii tRNA yes 314 e22 61 43.5771 298.66325 171.120175 2.233301216 0.115245 177 97 19036 YOR234C intron no 627 101 117 35.000725 295.4785 165.2396125 2.218114168 0.098482 177 98 10820 "rRNA(18S,5.8S,25S)" 18S yes 7956 986 1005 41.189828 316.716088 178.952958 2.252738881 -0.053762 177 99 14173 MT_COB intronic no 7308 6781 6798 32.780535 280.255304 156.5179195 2.194564066 0.156379 177 100 12972 MT_COX1 ai2 no 13084 3781 3803 28.593086 307.342062 167.967574 2.22522545 -0.156201 177 101 7325 snR66 3_flank no 286 30.64356 289.188273 159.9159165 2.203891691 0.028215 177 102 16957 YGR029W intron no 183 101 123 30.581771 297.706589 164.14418 2.215225489 -0.027342 177 103 14864 MT_Ser2; Arg2 tRNAArg2 yes 360 226 246 30.483014 336.71793 183.600472 2.263873793 -0.281619 177 104 6519 snR46 snR46 yes 397 86 103 36.623693 388.49783 212.5607615 2.327483097 -0.630835 178 2 7056 snR62 snR62 yes 300 71 88 32.917292 315.682858 174.300075 2.241297574 -0.090388 178 3 19162 YPL075W intron no 851 761 777 40.679767 313.922047 177.300907 2.248710957 -0.031231 178 4 5147 snR11 3_flank no 458 30.618875 286.579454 158.5991645 2.200300895 0.044059 178 5 1722 Leu7 LeuTAA 5_flank no 284 29.476659 310.831613 170.154136 2.23084251 -0.145209 178 6 8503 snR19 / U1 RNA U1 yes 868 11 27 85.380482 348.77112 217.075801 2.336611412 -0.035031 178 7 21797 copy of SH14862 no 360 28.182722 291.261193 159.7219575 2.203364624 -0.103288 178 8 10918 "rRNA(18S,5.8S,25S)" 18S yes 7956 1476 1493 835.264325 1233.365882 1034.315104 3.014652866 -0.098427 178 9 20614 YHR079C-A spliced yes 40 21 38 42.207922 324.101171 183.1545465 2.262817704 -0.11351 178 10 2604 Pro3 ProTGG_ii 5_flank no 303 35.486709 325.052638 180.2696735 2.255922672 -0.141464 178 11 7231 snR65 5_flank no 300 31.74463 292.32671 162.03567 2.209610629 0.045204 178 12 14371 MT_ORF9; ORF10 ORF10 yes 578 331 347 31.91646 293.031553 162.4740065 2.21078389 0.046407 178 13 4399 telomerase RNA telomerase yes 1501 1031 1048 30.278685 293.376636 161.8276605 2.209052756 -0.010768 178 14 6332 snR43 5_flank no 409 78.734659 324.925079 201.829869 2.304985438 0.089539 178 15 21719 copy of SH11709 no 7956 62.956659 325.435725 194.196192 2.28824071 -0.012635 178 16 16515 YER117W intron no 571 481 498 33.579042 303.036655 168.3078485 2.226104368 0.018892 178 17 5737 snR34 3_flank no 750 32.05363 307.561943 169.8077865 2.229957601 -0.038221 178 18 9379 RUF1 RUF1 yes 750 471 487 68.961795 387.342965 228.15238 2.358225004 -0.396402 178 19 2456 Phe5 PheGAA_v intron/tRNA no 291 i14 48 887.008457 1205.638083 1046.32327 3.019665884 0.014058 178 20 9195 snR7 U5 RNA 3_flank no 415 32.118273 301.463921 166.791097 2.222172865 0.000755 178 21 17632 YJR094W intron no 375 241 258 33.356421 313.238772 173.2975965 2.238792539 -0.065693 178 22 11217 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2971 2992 35.576714 317.872181 176.7244475 2.247296633 -0.078819 178 23 4060 SRP SRP yes 875 191 208 50.567772 361.521032 206.044402 2.31396082 -0.356386 178 24 18267 YML056C intron no 508 221 242 31.35071 311.823105 171.5869075 2.234484147 -0.086708 178 25 444 Asp1 AspGTC_i tRNA yes 271 41 54 69.896184 341.525727 205.7109555 2.313257421 -0.087927 178 26 299 Arg4 ArgCCT 3_flank no 272 29.245268 309.912146 169.578707 2.22937132 -0.147984 178 27 8820 LSR1 / U2 RNA U2 yes 1375 741 756 37.830913 288.45278 163.1418465 2.212565374 0.19015 178 28 2650 Pro4 ProTGG_iii 5_flank no 302 35.817941 298.658712 167.2383265 2.223335813 0.081582 178 29 7305 snR66 snR66 yes 286 16 32 101.639315 367.813673 234.726494 2.370562112 -0.049437 178 30 5611 snR34 5_flank no 750 35.177853 286.195664 160.6867585 2.20598009 0.179458 178 31 16583 YFL034C 5_exon no 421 21 38 56.341845 329.193281 192.767563 2.285033957 -0.081282 178 32 13556 MT_COX1 exon6 yes 13084 12541 12558 32.478948 288.819544 160.649246 2.205878692 0.091306 178 33 3888 RNaseP 3_flank no 569 30.532657 299.895904 165.2142805 2.218047583 -0.042511 178 34 7074 snR62 3_flank no 300 44.20862 301.988903 173.0987615 2.238293961 0.086919 178 35 17703 YKL081W intron no 426 61 82 30.934854 306.183234 168.559044 2.226752059 -0.067047 178 36 16344 YDR500C intron no 439 161 177 32.195667 314.082296 173.1389815 2.238394858 -0.087004 178 37 19866 Negative Control no 60 NA #VALUE! 37.957211 303.705733 170.831472 2.232567883 0.054477 178 38 21248 YPL031C spliced yes 40 13 30 31.215221 299.038822 165.1270215 2.217818147 -0.014155 178 39 12736 MT_COX1 exon1 yes 13084 241 260 31.248119 296.886454 164.0672865 2.215021995 0.000245 178 40 6294 snR42 snR42 yes 551 251 268 31.259135 317.073959 174.166547 2.240964742 -0.122656 178 41 11011 "rRNA(18S,5.8S,25S)" 18S yes 7956 1941 1959 35.783225 296.53339 166.1583075 2.22052206 0.09883 178 42 19551 CBP1 2.2 CBP1 2.2 yes 401 121 137 37.985693 297.446528 167.7161105 2.224574782 0.112732 178 43 12053 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7151 7168 33.326105 300.637677 166.981891 2.222669375 0.035404 178 44 3109 Ser4 SerGCT 5_flank no 301 30.894999 323.552882 177.2239405 2.248522389 -0.177496 178 45 15050 MT_COX 2; ORF1 ORF1exon1 yes 2427 1351 1375 30.671908 336.629496 183.650702 2.263992593 -0.278412 178 46 14639 MT_21S Sce1 no 4639 3796 3815 32.637162 294.906689 163.7719255 2.214239455 0.05798 178 47 5370 snR31 5_flank no 425 61.0721 367.672121 214.3721105 2.331168284 -0.327301 178 48 20051 YBR191W spliced yes 40 21 37 45.294348 287.032104 166.163226 2.220534915 0.229707 178 49 2576 Pro2 ProTGG_i 3_flank no 303 32.016878 305.173812 168.595345 2.226845579 -0.025067 178 50 15851 YDL075W intron/exon no 521 461 479 31.900945 319.601191 175.751068 2.244897973 -0.13386 178 51 18271 YML056C intron no 508 301 322 31.80692 323.250902 177.528911 2.249269089 -0.163144 178 52 2460 Phe5 PheGAA_v tRNA yes 291 53 67 38.164712 285.688083 161.9263975 2.209317654 0.217589 178 53 8122 snoRNA cluster 3; snR41 yes 743 121 143 29.444081 328.476883 178.960482 2.252757141 -0.248024 178 54 5025 snR10 snR10 yes 445 156 171 33.549527 282.690359 158.119943 2.198986649 0.164664 178 55 19654 SIR1 2.2 SIR1 2.2 yes 401 201 221 33.330202 312.638678 172.98444 2.23800704 -0.061279 178 56 7040 snR62 5_flank/snR62 no 300 33.077276 311.780786 172.429031 2.236610388 -0.057642 178 57 6220 snR40 3_flank no 297 34.89793 313.96818 174.433055 2.241628787 -0.052735 178 58 17273 YHR123W 3_exon no 191 161 175 36.699857 312.453289 174.576573 2.241985964 -0.027939 178 59 21213 YOR096W spliced yes 40 25 37 67.568887 340.385151 203.977019 2.309581241 -0.094745 178 60 13981 MT_COB intronic no 7308 3901 3923 30.131799 306.749605 168.440702 2.226447043 -0.097915 178 61 14419 MT_21S 21S_rRNA3 yes 4639 496 514 318.608804 636.830197 477.7195005 2.67917297 -0.121087 178 62 19378 YPR043W intron no 503 141 160 40.327023 325.4158 182.8714115 2.262145817 -0.131106 178 63 652 Gln2 GlnTTG_i tRNA yes 272 46 58 36.359797 268.673876 152.5168365 2.183317789 0.342293 178 64 8321 snoRNA cluster4 intergenic no 638 391 413 28.328066 330.749471 179.5387685 2.254158242 -0.301067 178 65 21110 YNL069C spliced yes 40 17 34 32.714922 302.064656 167.389789 2.223728962 0.016037 178 66 12354 5S rRNA NTS2 no 1420 726 741 37.195325 305.950317 171.572821 2.234448492 0.032051 178 67 1075 Gly3 GlyGCC 3_flank no 271 31.12256 304.946801 168.0346805 2.225398925 -0.05328 178 68 5507 snR32 3_flank no 388 35.524729 313.605317 174.565023 2.24195723 -0.042506 178 69 1586 Leu4 LeuCAA_iv tRNA/3_flank no 314 33.442984 285.089711 159.2663475 2.20212402 0.145782 178 70 10249 RUF6 3_flank no 1251 29.119297 286.993504 158.0564005 2.198812087 -0.032836 178 71 1673 Leu6 LeuGAG 5_flank no 282 33.162138 298.814963 165.9885505 2.220078132 0.04839 178 72 13057 MT_COX1 ai2 no 13084 5056 5075 28.721647 301.027545 164.874596 2.217153744 -0.117775 178 73 20989 YML067C spliced yes 40 21 38 34.705327 298.605664 166.6554955 2.221819639 0.068955 178 74 10688 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 326 343 36.521512 294.944146 165.732829 2.219408544 0.120566 178 75 16679 YGL030W exon/intron no 330 41 53 71.489505 325.887421 198.688463 2.29817265 0.036242 178 76 18362 YMR033W 3_exon no 186 161 177 30.11126 293.590259 161.8507595 2.209114742 -0.017898 178 77 16854 YGL183C intron/exon no 183 121 138 36.238759 279.740208 157.9894835 2.198628179 0.248143 178 78 126 Arg1 ArgACG_i tRNA yes 273 6 18 44.502463 280.562405 162.532434 2.210940039 0.29047 178 79 1900 Lys1 LysCTT_i 5_flank no 272 46.646434 298.43179 172.539112 2.236887559 0.127065 178 80 5996 snR36 3_flank no 555 44.664053 291.002102 167.8330775 2.224877558 0.190033 178 81 11991 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6841 6860 36.468976 300.245762 168.357369 2.22623213 0.075943 178 82 18768 YNL246W intron no 195 81 100 40.66873 327.473685 184.0712075 2.264985861 -0.147196 178 83 6355 snR43 snR43 yes 409 16 33 32.468847 283.272167 157.870507 2.198301004 0.126689 178 84 21477 copy of SH1444 no 314 30.493495 321.651639 176.072567 2.245691696 -0.172795 178 85 16502 YER117W intron no 571 221 239 30.616846 286.928033 158.7724395 2.200775118 0.041751 178 86 14649 MT_21S intronic/21S_rRNA4 no 4639 3946 3965 43.348151 326.353621 184.850886 2.266821537 -0.128711 178 87 16410 YER056C intron no 497 261 282 30.938283 311.233676 171.0859795 2.233214421 -0.097053 178 88 10936 "rRNA(18S,5.8S,25S)" 18S yes 7956 1566 1581 16207.35284 22143.36785 19175.36034 4.282743534 -1.132788 178 89 4102 SRP SRP yes 875 401 417 37.637408 295.769023 166.7032155 2.221943977 0.126126 178 90 6961 snR58 3_flank no 296 31.383811 311.524444 171.4541275 2.234147945 -0.083842 178 91 6451 snR45 snR45 yes 372 101 113 59.417948 292.542312 175.98013 2.245463634 0.239518 178 92 1027 Gly2 GlyCCC_ii 3_flank no 272 31.517545 305.827445 168.672495 2.227044269 -0.04542 178 93 16573 YER179W 5_exon no 192 1 17 37.940302 307.196391 172.5683465 2.236961138 0.022505 178 94 786 Glu1 GluCTC 5_flank no 272 32.529321 279.495607 156.012464 2.193159296 0.153344 178 95 1392 Leu1 LeuCAA_i tRNA/intron no 315 30 i12 31.37016 303.427995 167.3990775 2.22375306 -0.035812 178 96 682 Gln3 GlnTTG_ii 5_flank no 272 33.380519 303.006655 168.193587 2.225809433 0.016682 178 97 12060 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7186 7201 77.000073 314.215787 195.60793 2.291386457 0.159096 178 98 14444 MT_21S 21S_rRNA3 yes 4639 871 888 80.905084 342.349313 211.6271985 2.325571483 -0.020536 178 99 20468 YGL187C spliced yes 40 5 27 28.852479 319.075904 173.9641915 2.240459863 -0.215755 178 100 10178 RUF6 RUF6 yes 1251 736 754 30.849478 297.749756 164.299617 2.215636551 -0.018508 178 101 13324 MT_COX1 ai5a no 13084 9061 9080 30.724161 277.995418 154.3597895 2.188534178 0.09294 178 102 13174 MT_COX1 exon4 yes 13084 6811 6827 62.065166 313.66871 187.866938 2.273850357 0.075393 178 103 1432 Leu2 LeuCAA_ii 5_flank no 314 32.463534 339.828982 186.146258 2.26985431 -0.278283 178 104 8013 snoRNA cluster 2 intergenic no 739 301 321 32.255697 399.125812 215.6907545 2.33383153 -0.722952 179 2 21339 YPR098C spliced yes 40 1 20 34.718228 288.60989 161.664059 2.208613479 0.153253 179 3 13601 MT_ATP8/AAP1 MT_AAP1 yes 347 151 173 30.640029 303.797616 167.2188225 2.223285161 -0.062645 179 4 11855 "rRNA(18S,5.8S,25S)" 25S yes 7956 6161 6179 9541.339966 29835.03354 19688.18675 4.29420572 -2.276457 179 5 557 Cys1 CysGCA 3_flank no 272 33.295005 294.870453 164.082729 2.215062871 0.079044 179 6 17267 YHR123W exon/intron no 191 41 60 35.066206 285.453197 160.2597015 2.204824329 0.184561 179 7 2872 Pro7 ProTGG_vi 3_flank no 303 32.016184 303.552289 167.7842365 2.224751156 -0.01528 179 8 21548 copy of SH4257 no 1501 32.825862 301.028083 166.9269725 2.222526517 0.025934 179 9 5780 snR35 snR35 yes 740 86 103 33.660485 282.429623 158.045054 2.198780909 0.169811 179 10 20121 YDL079C spliced yes 40 5 21 43.122517 300.701575 171.912046 2.235306309 0.095094 179 11 13643 MT_ATP6 ATP6 yes 980 451 468 31.736456 291.949045 161.8427505 2.209093251 0.047315 179 12 20692 YIL148W spliced yes 40 1 18 37.609169 296.517898 167.0635335 2.222881663 0.119566 179 13 3510 Tyr1 TyrGTA_i 3_flank no 289 34.054415 287.566465 160.81044 2.20631424 0.148774 179 14 7769 snoRNA cluster1 snR76 yes 1574 641 656 30.545113 255.711662 143.1283875 2.155725778 0.195121 179 15 8800 LSR1 / U2 RNA U2 yes 1375 641 657 30.960527 271.695376 151.3279515 2.179919153 0.135372 179 16 7471 snR71 5_flank no 290 32.422128 352.953451 192.6877895 2.284854195 -0.379801 179 17 7578 snR189 5_flank no 389 35.956235 264.126486 150.0413605 2.176210993 0.362067 179 18 1029 Gly2 GlyCCC_ii 3_flank no 272 32.336104 309.186121 170.7611125 2.232388976 -0.046373 179 19 10253 RUF6 3_flank no 1251 30.632206 297.78645 164.209328 2.215397824 -0.026115 179 20 15637 YBR186W intron no 213 81 100 37.195716 288.779681 162.9876985 2.212154827 0.18034 179 21 3031 Ser2 SerAGA_ii 3_flank no 282 31.065479 284.871535 157.968507 2.198570514 0.070185 179 22 12175 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7761 7776 110.305617 423.476555 266.891086 2.426334069 -0.300817 179 23 4720 snR4 snR4 yes 386 136 152 37.532245 296.865743 167.198994 2.22323366 0.115821 179 24 1548 Leu4 LeuCAA_iv 5_flank no 314 31.182234 293.596762 162.389498 2.210557939 0.018556 179 25 17733 YKL156W intron no 450 241 258 30.131829 276.406166 153.2689975 2.185454317 0.070326 179 26 2777 Pro6 ProTGG_v 5_flank no 302 33.338534 307.468432 170.403483 2.231478467 -0.019964 179 27 17205 YHR039C exon/intron no 262 41 57 37.672368 287.20111 162.436739 2.210684262 0.199158 179 28 5234 snR30 snR30 yes 801 21 36 37.837532 313.272986 175.555259 2.244413844 -0.032472 179 29 10482 RUF8 RUF8 yes 1151 336 350 46.71625 304.286757 175.5015035 2.244280841 0.073984 179 30 11419 "rRNA(18S,5.8S,25S)" 25S yes 7956 3981 3998 50.409579 322.447144 186.4283615 2.270511983 -0.061224 179 31 19523 ACT1 ACT1 yes 401 361 380 32.269338 312.941331 172.6053345 2.237054214 -0.077064 179 32 11845 "rRNA(18S,5.8S,25S)" 25S yes 7956 6111 6128 1049.147193 1066.481824 1057.814509 3.024409519 0.425214 179 33 12531 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 361 385 30.756192 306.057561 168.4068765 2.226359821 -0.072339 179 34 11225 "rRNA(18S,5.8S,25S)" ITS1 no 7956 3011 3032 33.296298 310.975967 172.1361325 2.235872041 -0.048522 179 35 1836 Leu9 LeuTAG_ii 5_flank no 301 33.527564 305.878192 169.702878 2.229689208 -0.004808 179 36 19057 YOR234C intron no 627 521 540 33.681788 283.611768 158.646778 2.200431256 0.162781 179 37 2892 Pro8 ProTGG_vii 5_flank no 305 33.767359 311.753982 172.7606705 2.237444881 -0.04888 179 38 12555 MT_15S 5_flank no 1848 76 98 31.509897 318.591406 175.0506515 2.243163731 -0.131146 179 39 4289 telomerase RNA telomerase yes 1501 481 498 36.083108 304.809738 170.446423 2.231587892 0.034255 179 40 9292 RUF1 RUF1 yes 750 36 53 33.753862 293.764867 163.7593645 2.214206144 0.097837 179 41 4674 snR4 5_flank no 386 31.40225 289.210034 160.306142 2.204950162 0.053615 179 42 3129 Ser4 SerGCT tRNA yes 301 i14 47 38.123423 304.413063 171.268243 2.233676842 0.048376 179 43 15061 MT_COX 2; ORF1 ORF1exon1 yes 2427 1516 1533 33.402654 294.432502 163.917578 2.214625528 0.085151 179 44 5334 snR30 snR30 yes 801 521 533 35.426698 276.048917 155.7378075 2.192394056 0.265287 179 45 16759 YGL087C exon/intron no 185 41 60 32.905113 327.03982 179.9724665 2.255206069 -0.177887 179 46 1583 Leu4 LeuCAA_iv tRNA yes 314 e22 61 37.03069 289.405228 163.217959 2.212767943 0.173151 179 47 10534 RUF8 RUF8 yes 1151 596 615 32.314034 309.352758 170.833396 2.232572774 -0.047988 179 48 10158 RUF6 RUF6 yes 1251 636 657 34.221856 322.569853 178.3958545 2.251384758 -0.12763 179 49 8920 LSR1 / U2 RNA 3_flank no 1375 38.306962 279.906417 159.1066895 2.20168844 0.269656 179 50 18926 YOL121C intron no 490 181 202 31.649958 304.735958 168.192958 2.225807809 -0.034459 179 51 16428 YER074W intron no 566 121 138 44.353768 320.045019 182.1993935 2.260546927 -0.071902 179 52 6238 snR42 5_flank no 551 31.380784 308.042344 169.711564 2.229711436 -0.063247 179 53 9927 RUF5-1 RUF5-1 yes 975 441 458 31.254732 289.101392 160.178062 2.204603035 0.04939 179 54 864 Glu2 GluTTC_i 3_flank no 272 31.114169 312.653965 171.884067 2.235235621 -0.099516 179 55 20380 YFL034C-A spliced yes 40 9 25 41.474207 308.656202 175.0652045 2.243199835 0.017926 179 56 5713 snR34 snR34 yes 750 486 501 32.858019 288.269398 160.5637085 2.20564739 0.106934 179 57 9273 RUF1 5_flank no 750 32.654233 294.865799 163.760016 2.214207872 0.058781 179 58 5377 snR31 5_flank no 425 34.527011 291.024132 162.7755715 2.211589229 0.130379 179 59 7586 snR189 snR189 yes 389 1 22 30.245138 295.719003 162.9820705 2.212139831 -0.026567 179 60 3229 Thr1 ThrAGT tRNA yes 273 1 15 59.003127 302.355302 180.6792145 2.256908194 0.152031 179 61 11568 "rRNA(18S,5.8S,25S)" 25S yes 7956 4726 4742 289.017981 574.202293 431.610137 2.635091636 -0.041557 179 62 204 Arg2 ArgACG_ii 3_flank no 273 34.279932 282.477771 158.3788515 2.199697189 0.188539 179 63 20785 YKL081W spliced yes 40 1 20 32.370682 292.282251 162.3264665 2.210389335 0.065877 179 64 19005 YOR122C 3_exon no 309 281 295 38.820627 303.036416 170.9285215 2.232814536 0.062695 179 65 5671 snR34 snR34 yes 750 276 295 30.760737 291.654043 161.20739 2.207384947 0.016569 179 66 5007 snR10 snR10 yes 445 66 82 37.342776 283.904487 160.6236315 2.205809441 0.224051 179 67 10060 RUF6 RUF6 yes 1251 146 166 33.351267 325.614877 179.483072 2.254023494 -0.16152 179 68 235 Arg3 ArgCCG tRNA yes 272 31 43 75.422266 305.748395 190.5853305 2.28008947 0.216007 179 69 11109 "rRNA(18S,5.8S,25S)" 18S yes 7956 2431 2449 83.820243 348.221635 216.020939 2.33449585 -0.041297 179 70 7503 snR71 3_flank no 290 31.245406 298.144221 164.6948135 2.216679923 -0.007629 179 71 10551 RUF8 RUF8 yes 1151 681 698 31.022021 297.691626 164.3568235 2.215787739 -0.012324 179 72 18221 YML026C 5_exon no 501 21 37 34.920179 294.463089 164.691634 2.216671538 0.106035 179 73 18634 YNL096C intron no 445 301 315 49.152159 340.272204 194.7121815 2.289393123 -0.208006 179 74 17159 YHR016C 5_exon no 268 21 37 30.252283 295.77562 163.0139515 2.212224775 -0.026673 179 75 21732 copy of SH12132 no 7956 36.250062 291.590403 163.9202325 2.214632561 0.145739 179 76 19108 YOR312C intron no 507 381 401 30.060809 305.589422 167.8251155 2.224856955 -0.093401 179 77 9516 RUF3 5_flank no 631 29.060508 302.206723 165.6336155 2.219148482 -0.108245 179 78 20405 YFR031C-A spliced yes 40 13 29 74.572101 342.515862 208.5439815 2.319197661 -0.063364 179 79 16910 YGL232W 3_exon no 158 121 136 30.23615 285.212016 157.724083 2.197898011 0.033935 179 80 19090 YOR312C 5_exon no 507 21 40 34.451524 339.57021 187.010867 2.271866844 -0.266251 179 81 11857 "rRNA(18S,5.8S,25S)" 25S yes 7956 6171 6189 26870.74167 23836.03211 25353.38689 4.404035984 -0.636131 179 82 13096 MT_COX1 ai3 no 13084 5641 5658 38.825493 305.567135 172.196314 2.236023851 0.039469 179 83 11976 "rRNA(18S,5.8S,25S)" 25S yes 7956 6766 6782 2434.265666 3410.588497 2922.427082 3.465743684 -0.340307 179 84 5390 snR31 snR31 yes 425 16 33 32.85229 290.778212 161.815251 2.209019451 0.090797 179 85 16008 YDL137W intron no 432 241 253 56.261366 286.752716 171.507041 2.234281954 0.275391 179 86 10666 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 216 234 41.675457 304.46218 173.0688185 2.238218829 0.056142 179 87 1759 Leu7 LeuTAA 3_flank no 284 31.263986 289.049798 160.156892 2.204545632 0.050028 179 88 16820 YGL178W intron no 740 181 198 33.556564 317.532688 175.544626 2.244387539 -0.096863 179 89 17305 YHR203C intron no 369 81 98 33.694832 314.902209 174.2985205 2.241293701 -0.074602 179 90 2512 Pro1 ProAGG tRNA yes 272 51 63 1034.838636 705.406385 870.1225105 2.939580404 1.087249 179 91 12172 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7746 7769 31.710624 300.967153 166.3388885 2.220993795 -0.009547 179 92 20177 YDL189W spliced yes 40 9 21 84.809966 301.494482 193.152224 2.285899713 0.30524 179 93 21289 YPL175W spliced yes 40 1 18 41.46077 330.026768 185.743769 2.268914254 -0.165751 179 94 1805 Leu8 LeuTAG_i intron/tRNA no 301 i13 e3 33.866523 300.782228 167.3243755 2.223559213 0.040876 179 95 8028 snoRNA cluster 2 snR55 yes 739 376 393 33.801566 314.080596 173.941081 2.240402165 -0.066836 179 96 9589 RUF3 RUF3 yes 631 331 350 31.566617 305.662252 168.6144345 2.22689475 -0.042801 179 97 15636 YBR186W intron no 213 61 81 31.460252 280.42083 155.940541 2.192959037 0.112364 179 98 8863 LSR1 / U2 RNA U2 yes 1375 956 973 31.334982 290.736915 161.0359485 2.206922836 0.041681 179 99 3784 Val4 ValTAC 3_flank no 274 41.79753 284.54653 163.17203 2.212645717 0.245346 179 100 19800 Negative Control no 60 NA #VALUE! 33.113689 278.922228 156.0179585 2.193174591 0.175717 179 101 12721 MT_COX1 5_flank no 13084 16 44 32.888692 272.598494 152.743593 2.183963002 0.210821 179 102 1457 Leu2 LeuCAA_ii intron/tRNA no 314 i18 i33 55.696132 297.048379 176.3722555 2.246430269 0.180754 179 103 3540 Tyr2 TyrGTA_ii 5_flank no 289 46.937811 329.238357 188.088084 2.274361282 -0.133826 179 104 6528 snR46 snR46 yes 397 131 150 45.574924 384.163527 214.8692255 2.332174218 -0.54449 180 2 21810 copy of SH15490 no 433 34.576529 325.964341 180.270435 2.255924507 -0.151663 180 3 2514 Pro1 ProAGG tRNA/3_flank no 272 42.33485 287.521396 164.928123 2.217294716 0.217453 180 4 2173 Met2 MetCAT_ii 5_flank/tRNA no 272 42.148637 311.007824 176.5782305 2.24693716 -0.000596 180 5 8231 snoRNA cluster 3; 3_flank no 743 666 682 50.736931 325.071057 187.903994 2.273936011 -0.080283 180 6 17476 YJL001W intron no 216 101 119 28.27526 304.155254 166.215257 2.220670885 -0.155877 180 7 21770 copy of SH13810 no 7308 28.152473 299.168157 163.660315 2.213943383 -0.140624 180 8 14258 MT_VAR1 5_flank no 1467 76 97 29.934786 317.709074 173.82193 2.240104568 -0.169398 180 9 21919 copy of SH20199 no 40 52.711811 316.850278 184.7810445 2.266657418 -0.002645 180 10 13424 MT_COX1 intronic no 13084 10561 10577 31.661164 301.870417 166.7657905 2.222106966 -0.016694 180 11 18975 YOR096W intron no 501 181 195 39.27646 310.342399 174.8094295 2.242564855 -0.002803 180 12 19353 YPL249C intron no 337 201 222 33.702656 295.240331 164.4714935 2.216090636 0.084827 180 13 19466 ADH1 ADH1 yes 400 21 33 66.796723 357.432705 212.114714 2.326570796 -0.2192 180 14 21404 Pro8 spliced yes 40 21 33 78.203942 378.91346 228.558701 2.358997759 -0.276857 180 15 19936 YBL027W spliced yes 40 1 20 34.768624 338.470899 186.6197615 2.27095763 -0.256354 180 16 3918 RNase MRP RNaseMRP yes 540 6 22 69.406977 329.486798 199.4468875 2.299827263 -0.003241 180 17 5302 snR30 snR30 yes 801 361 373 38.832484 324.499832 181.666158 2.259274032 -0.128482 180 18 12716 MT_ORF 8 3_flank no 491 406 434 30.134693 298.029443 164.082068 2.215061121 -0.044716 180 19 3005 Ser2 SerAGA_ii 5_flank/tRNA no 282 30.47506 305.709193 168.0921265 2.225547371 -0.079831 180 20 13345 MT_COX1 ai5a no 13084 9376 9398 30.729948 309.443747 170.0868475 2.230670732 -0.093489 180 21 21868 copy of SH19503 no 402 32.989741 291.916358 162.4530495 2.210727868 0.087964 180 22 16796 YGL137W 5_exon no 300 1 17 49.969675 316.528015 183.248845 2.263041246 -0.014524 180 23 8792 LSR1 / U2 RNA U2 yes 1375 601 620 33.112365 283.605203 158.358784 2.199642158 0.145019 180 24 11462 "rRNA(18S,5.8S,25S)" 25S yes 7956 4196 4212 45.793458 314.636715 180.2150865 2.255791145 -0.020139 180 25 3303 Thr2 ThrCGT 3_flank no 272 33.142703 299.968579 166.555641 2.221559346 0.038625 180 26 3069 Ser3 SerCGA tRNA yes 301 i4 40 31.085543 315.135676 173.1106095 2.238323685 -0.115034 180 27 7864 snoRNA cluster1 intergenic/snR73 no 1574 1116 1137 29.070785 323.269114 176.1699495 2.24593183 -0.231923 180 28 18560 YMR292W intron no 182 81 95 33.476671 280.475034 156.9758525 2.19583285 0.176879 180 29 12361 5S rRNA NTS2 no 1420 761 780 31.598151 282.690617 157.144384 2.196298865 0.102088 180 30 15292 MT_9S 9S yes 701 556 577 29.765715 300.485263 165.125489 2.217814117 -0.07269 180 31 20759 YJR094W-A spliced yes 40 17 34 126.270975 432.839755 279.555365 2.446467831 -0.244868 180 32 7969 snoRNA cluster 2 5_flank no 739 81 96 37.199513 318.888266 178.0438895 2.250527073 -0.083664 180 33 433 Asp1 AspGTC_i 5_flank/tRNA no 271 30.907374 304.989929 167.9486515 2.225176521 -0.060785 180 34 2127 Met1 MetCAT_i tRNA yes 273 21 35 40.318904 281.921491 161.1201975 2.207149986 0.267954 180 35 17730 YKL156W intron no 450 181 201 29.17213 310.090166 169.631148 2.229505601 -0.151656 180 36 8153 snoRNA cluster 3; intergenic/snR70 no 743 276 297 33.898209 305.191425 169.544817 2.229284518 0.005299 180 37 4698 snR4 snR4 yes 386 26 45 31.671061 312.616094 172.1435775 2.235890824 -0.082243 180 38 4922 snR9 snR9 yes 387 16 35 31.682679 295.132529 163.407604 2.213272262 0.025576 180 39 12882 MT_COX1 ai1 no 13084 2431 2450 31.652582 304.12553 167.889056 2.225022387 -0.030681 180 40 8833 LSR1 / U2 RNA U2 yes 1375 806 820 180.845394 467.107173 323.9762835 2.510513219 -0.095716 180 41 16194 YDR381C intron no 294 61 78 42.957091 315.332152 179.1446215 2.253203774 -0.035767 180 42 10218 RUF6 RUF6 yes 1251 936 953 32.500203 297.229086 164.8646445 2.21712753 0.039146 180 43 2379 Phe4 PheGAA_iv 5_flank no 291 31.182248 297.128157 164.1552025 2.215254651 -0.003457 180 44 20685 YIL111W spliced yes 40 21 37 35.454666 301.931174 168.69292 2.227096856 0.05043 180 45 13065 MT_COX1 intronic no 13084 5176 5188 6308.879027 5580.428155 5944.653591 3.774126552 0.010906 180 46 8953 snR17a / U3a U3a yes 690 51 68 34.815558 320.505157 177.6603575 2.249590532 -0.104639 180 47 2260 Phe1 PheGAA_i 3_flank no 292 45.450439 296.667574 171.0590065 2.233145945 0.139629 180 48 5359 snR30 3_flank no 801 39.580003 312.294966 175.9374845 2.245358378 -0.019625 180 49 7562 snR79 3_flank no 284 33.855619 289.459175 161.657397 2.208595582 0.130582 180 50 10882 "rRNA(18S,5.8S,25S)" 18S yes 7956 1296 1313 39533.19901 17450.76395 28491.98148 4.454722653 0.354596 180 51 668 Gln2 GlnTTG_i 3_flank no 272 55.760444 359.075052 207.417748 2.316845915 -0.304675 180 52 9551 RUF3 RUF3 yes 631 141 157 33.21162 294.357696 163.784658 2.214273218 0.07963 180 53 7343 snR68 5_flank no 336 33.060633 287.420472 160.2405525 2.204772434 0.118783 180 54 14115 MT_COB intronic no 7308 5911 5932 30.831147 314.898849 172.864998 2.237707065 -0.122231 180 55 10695 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 361 378 36.96173 300.816734 168.889232 2.227601961 0.076805 180 56 12466 5S rRNA 5S yes 1420 1286 1303 16941.07462 11119.94541 14030.51002 4.147073458 0.066675 180 57 12732 MT_COX1 exon1 yes 13084 181 193 89.553094 330.065487 209.8092905 2.321824715 0.120022 180 58 7897 snoRNA cluster1 intergenic no 1574 1281 1297 36.521124 300.651891 168.5865075 2.226822814 0.073194 180 59 10973 "rRNA(18S,5.8S,25S)" 18S yes 7956 1751 1766 28111.81642 16572.63457 22342.22549 4.349126431 0.02273 180 60 5382 snR31 5_flank no 425 32.252536 304.642647 168.4475915 2.226464806 -0.014201 180 61 9942 RUF5-1 RUF5-1 yes 975 516 532 38.443587 300.282511 169.363049 2.228818664 0.087312 180 62 4400 telomerase RNA telomerase yes 1501 1036 1054 32.35754 298.162978 165.260259 2.218168429 0.028776 180 63 9277 RUF1 5_flank no 750 28.382432 311.844208 170.11332 2.230738321 -0.190698 180 64 10847 "rRNA(18S,5.8S,25S)" 18S yes 7956 1121 1138 364.771664 1030.671817 697.7217405 2.843682255 -0.802543 180 65 28 Ala1 AlaAGC tRNA yes 273 36 48 181.753714 439.673448 310.713581 2.492360236 0.029194 180 66 16032 YDL191W intron no 591 101 117 43.885146 287.913528 165.899337 2.21984465 0.216928 180 67 8429 snoRNA cluster 5 intergenic no 586 311 330 31.354113 305.118453 168.236283 2.225919665 -0.046575 180 68 490 Asp2 AspGTC_ii tRNA yes 272 11 28 147.141594 399.389403 273.2654985 2.436584803 0.04505 180 69 10356 RUF7 RUF7 yes 700 391 406 73.530061 321.994505 197.762283 2.296143467 0.077997 180 70 4297 telomerase RNA telomerase yes 1501 521 537 35.551601 285.058246 160.3049235 2.204946861 0.193675 180 71 17686 YKL006W intron no 498 221 238 35.268845 294.295701 164.782273 2.216910489 0.111554 180 72 9731 RUF4 RUF4 yes 988 431 443 51.718038 300.119707 175.9188725 2.245312433 0.134439 180 73 14178 MT_COB intron/exon6 no 7308 6856 6872 42.920729 324.756752 183.8387405 2.264437036 -0.116667 180 74 3768 Val4 ValTAC tRNA/3_flank no 274 30.270924 292.696335 161.4836295 2.208128502 -0.006761 180 75 578 Gln1 GlnCTG 5_flank no 272 38.351027 287.086063 162.718545 2.211437052 0.207541 180 76 14850 MT_Ser2; Arg2 5_flank no 360 16 44 30.135483 289.073513 159.604498 2.203045127 0.010846 180 77 14555 MT_21S 21S_rRNA3 yes 4639 2536 2557 30.195348 321.965365 176.0803565 2.245710909 -0.18485 180 78 19892 Positive Control 8 no 21 NA #VALUE! 32.362926 309.313795 170.8383605 2.232585395 -0.04705 180 79 13031 MT_COX1 ai2 no 13084 4666 4684 32.50594 299.666846 166.086393 2.220334053 0.024291 180 80 8061 snoRNA cluster 2 intergenic/snR61 no 739 541 558 30.57773 289.984986 160.281358 2.204883013 0.020904 180 81 13788 MT_COB intronic no 7308 1006 1025 32.799638 323.953743 178.3766905 2.251338102 -0.155786 180 82 21353 YPR187W spliced yes 40 1 16 47.672588 283.896708 165.784648 2.219544312 0.267123 180 83 13122 MT_COX1 ai3 no 13084 6031 6048 30.999965 311.290075 171.14502 2.233364267 -0.095307 180 84 10621 RUF8 3_flank no 1151 67.401852 325.05979 196.230821 2.292767221 0.01783 180 85 9087 snR14 / U4 RNA U4 yes 360 51 68 31.339629 314.45672 172.8981745 2.237790408 -0.102562 180 86 6914 snR58 5_flank no 296 37.95168 314.167078 176.059379 2.245659166 -0.04016 180 87 21604 copy of SH6880 no 288 35.999998 290.55066 163.275329 2.212920568 0.151701 180 88 13092 MT_COX1 ai3 no 13084 5581 5605 31.83557 320.784524 176.310047 2.246277061 -0.143842 180 89 16925 YGR001C 5_exon no 162 21 33 102.397067 319.644746 211.0209065 2.324325484 0.272076 180 90 12351 5S rRNA NTS2 no 1420 711 728 40.713054 302.330485 171.5217695 2.234319248 0.073557 180 91 12157 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7671 7689 196.821379 461.540307 329.180843 2.517434553 0.004063 180 92 8564 snR19 / U1 RNA U1 yes 868 316 332 49.500188 340.582523 195.0413555 2.290126707 -0.208272 180 93 2305 Phe2 PheGAA_ii 3_flank no 292 35.28285 324.362712 179.822781 2.25484471 -0.136054 180 94 14450 MT_21S 21S_rRNA3 yes 4639 961 980 138.850496 373.434865 256.1426805 2.40848195 0.140444 180 95 12505 MT_tRNA Pro 3_flank no 272 226 248 31.930241 322.442896 177.1865685 2.248430797 -0.155356 180 96 4681 snR4 5_flank no 386 38.340297 327.114652 182.7274745 2.261803852 -0.152071 180 97 18957 YOL127W intron no 514 321 337 33.888297 293.483238 163.6857675 2.214010919 0.101853 180 98 15916 YDL083C intron no 532 401 422 36.945533 342.636147 189.79084 2.278275248 -0.284984 180 99 15019 MT_COX 2; ORF1 ORF1exon1 yes 2427 886 914 29.254875 337.436646 183.3457605 2.263270872 -0.304304 180 100 10623 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 1 21 35.371984 308.223359 171.7976715 2.235017273 -0.00151 180 101 15677 YBR191W intron no 488 181 198 37.15425 299.160698 168.157474 2.225716175 0.092598 180 102 9811 RUF4 3_flank no 988 32.614903 288.448443 160.531673 2.205560732 0.098036 180 103 18290 YML073C 5_exon no 515 1 17 44.717251 316.678148 180.6976995 2.256952624 -0.041731 180 104 15094 MT_COX 2; ORF1 intronic/orf2exon2 no 2427 2011 2033 29.864399 367.879696 198.8720475 2.298573745 -0.508846 181 2 11025 "rRNA(18S,5.8S,25S)" 18S yes 7956 2011 2026 748.493652 1275.915969 1012.204811 3.005268397 -0.291341 181 3 10895 "rRNA(18S,5.8S,25S)" 18S yes 7956 1361 1379 326.071276 655.498234 490.784755 2.690891064 -0.146388 181 4 15940 YDL115C 3_exon no 189 161 182 28.441379 308.955468 168.6984235 2.227111024 -0.171397 181 5 10614 RUF8 3_flank no 1151 34.128988 292.610573 163.3697805 2.213171726 0.112143 181 6 1860 Leu9 LeuTAG_ii intron/tRNA no 301 i3 40 30.135659 292.077217 161.106438 2.207112896 -0.007539 181 7 9783 RUF4 RUF4 yes 988 691 713 29.999114 286.627588 158.313351 2.199517542 0.015114 181 8 18948 YOL127W intron no 514 141 159 33.669586 300.460065 167.0648255 2.222885021 0.04111 181 9 15946 YDL125C intron no 211 101 118 30.703027 288.948416 159.8257215 2.203646674 0.031768 181 10 4883 snR8 3_flank no 390 31.584409 296.166278 163.8753435 2.214513615 0.015895 181 11 7521 snR79 5_flank no 284 32.545039 285.625214 159.0851265 2.201629578 0.113906 181 12 1902 Lys1 LysCTT_i 5_flank no 272 29.820265 296.677175 163.24872 2.212849785 -0.047296 181 13 21400 Pro8 spliced yes 40 5 20 35.778251 283.932931 159.855591 2.20372783 0.206082 181 14 6240 snR42 5_flank no 551 32.288987 301.069586 166.6792865 2.221881633 0.0087 181 15 13728 MT_COB exon1 yes 7308 106 127 32.711115 329.852089 181.281602 2.25835373 -0.201496 181 16 3308 Thr2 ThrCGT 3_flank no 272 31.194927 276.099413 153.64717 2.186524565 0.12568 181 17 21534 copy of SH3940 no 540 29.629339 294.898954 162.2641465 2.21022257 -0.042934 181 18 17172 YHR021C 5_exon no 650 21 42 30.015076 302.020223 166.0176495 2.220154261 -0.07336 181 19 8051 snoRNA cluster 2 intergenic no 739 491 507 32.397975 292.251081 162.324528 2.210384149 0.066953 181 20 12712 MT_ORF 8 ORF8 yes 491 346 368 30.580148 284.71977 157.649959 2.197693862 0.053813 181 21 6216 snR40 3_flank no 297 32.822306 327.76267 180.292488 2.255977632 -0.184387 181 22 18670 YNL112W intron no 1102 581 599 35.005732 317.476711 176.2412215 2.246107494 -0.078921 181 23 15518 YBR048W intron no 611 321 341 30.858374 305.618083 168.2382285 2.225924687 -0.06623 181 24 11931 "rRNA(18S,5.8S,25S)" 25S yes 7956 6541 6558 132.062165 451.770641 291.916403 2.465258499 -0.298301 181 25 19806 Negative Control no 60 NA #VALUE! 35.112522 293.069651 164.0910865 2.215084991 0.120032 181 26 7443 snR69 3_flank no 301 28.885814 305.383164 167.134489 2.223066078 -0.133793 181 27 7565 snR79 3_flank no 284 30.055285 318.206783 174.131034 2.240876179 -0.168085 181 28 9657 RUF4 RUF4 yes 988 61 73 56.916182 293.952542 175.434362 2.244114662 0.214304 181 29 1173 His1 HisGTG 3_flank no 272 31.588691 321.909642 176.7491665 2.247357374 -0.155719 181 30 11222 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2996 3018 29.789239 301.304197 165.546718 2.218920575 -0.076876 181 31 10815 "rRNA(18S,5.8S,25S)" 18S yes 7956 961 981 16409.60704 9010.175317 12709.89118 4.104141832 0.37787 181 32 10745 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 611 626 39.522702 284.38616 161.954431 2.209392835 0.241812 181 33 16766 YGL103W 5_exon no 611 1 17 35.504538 308.206744 171.855641 2.235163792 0.000172 181 34 11937 "rRNA(18S,5.8S,25S)" 25S yes 7956 6571 6587 203.95491 623.79988 413.877395 2.616871707 -0.550485 181 35 13365 MT_COX1 intronic no 13084 9676 9697 31.538684 301.200334 166.369509 2.221073735 -0.01665 181 36 9677 RUF4 RUF4 yes 988 161 177 38.587123 299.915014 169.2510685 2.228531419 0.091074 181 37 18636 YNL096C intron no 445 341 358 31.732379 293.250488 162.4914335 2.21083047 0.038992 181 38 1320 Ile3 IleTAT_ii 5_flank no 333 31.736153 303.999575 167.867864 2.224967564 -0.027165 181 39 3977 RNase MRP RNaseMRP yes 540 301 316 38.617232 282.603532 160.610382 2.205773615 0.249297 181 40 9398 RUF1 3_flank no 750 33.930795 315.373093 174.651944 2.242173424 -0.075405 181 41 10327 RUF7 RUF7 yes 700 246 263 33.822193 308.103615 170.962904 2.232901886 -0.019101 181 42 3700 Val3 ValCAC 5_flank no 273 33.672103 300.116702 166.8944025 2.222441771 0.043967 181 43 1152 His1 HisGTG 5_flank/tRNA no 272 31.209389 291.267359 161.238374 2.20746841 0.034131 181 44 9261 snR6 / U6 RNA 3_flank no 312 33.23566 296.065917 164.6507885 2.216563815 0.069732 181 45 1189 Ile1 IleAAT 5_flank no 274 46.394065 360.67323 203.5336475 2.308636216 -0.375871 181 46 18259 YML056C intron no 508 61 82 30.441354 303.690759 167.0660565 2.222888221 -0.06879 181 47 5961 snR36 snR36 yes 555 261 279 34.524021 285.366555 159.945288 2.20397145 0.177215 181 48 702 Gln3 GlnTTG_ii tRNA yes 272 41 53 45.059751 308.361841 176.710796 2.247263083 0.032352 181 49 19908 YAL001C spliced yes 40 13 31 31.695777 301.51943 166.6076035 2.221694817 -0.013412 181 50 3974 RNase MRP RNaseMRP yes 540 286 298 69.994653 310.940592 190.4676225 2.279821161 0.14317 181 51 5447 snR31 3_flank no 425 29.0428 311.235803 170.1393015 2.230804645 -0.163085 181 52 17345 YIL018W intron no 500 301 317 33.038995 311.977941 172.508468 2.236810418 -0.059684 181 53 10931 "rRNA(18S,5.8S,25S)" 18S yes 7956 1541 1554 60.153304 311.237879 185.6955915 2.268801594 0.083898 181 54 3612 Val1 ValAAC_i tRNA yes 274 55 67 43.138307 279.266836 161.2025715 2.207371965 0.30056 181 55 2972 Ser1 SerAGA_i 3_flank no 283 34.6756 326.892554 180.784077 2.257160176 -0.159346 181 56 3453 Trp1 TrpCCA tRNA/3_flank no 306 38.723991 308.763357 173.743674 2.239909001 0.010156 181 57 5584 snR33 3_flank no 383 32.435257 290.900921 161.668089 2.208624305 0.07668 181 58 11755 "rRNA(18S,5.8S,25S)" 25S yes 7956 5661 5678 2025.970885 7932.343809 4979.157347 3.697155851 -1.960838 181 59 18787 YNL301C intron no 532 81 98 34.409033 314.391753 174.400393 2.241547459 -0.061908 181 60 17331 YIL018W 5_exon no 500 21 37 42.682526 290.988316 166.835421 2.222288262 0.18471 181 61 13113 MT_COX1 ai3 no 13084 5896 5922 30.344149 321.238493 175.791321 2.24499743 -0.175555 181 62 915 Glu3 GluTTC_ii 3_flank no 272 30.448346 287.465577 158.9569615 2.201279553 0.032543 181 63 6185 snR40 5_flank/snR40 no 297 32.689667 325.398514 179.0440905 2.252959991 -0.168173 181 64 7996 snoRNA cluster 2 intergenic no 739 216 233 35.01201 291.314371 163.1631905 2.212622189 0.133691 181 65 5653 snR34 snR34 yes 750 186 203 54.401092 339.438233 196.9196625 2.294289083 -0.171283 181 66 13490 MT_COX1 intronic no 13084 11551 11570 33.429622 313.342577 173.3860995 2.239014277 -0.065604 181 67 16364 YEL012W intron no 223 121 140 33.634904 303.450138 168.542521 2.226709486 0.016211 181 68 17694 YKL006W intron no 498 381 401 33.738121 325.931025 179.834573 2.254873188 -0.159143 181 69 14302 MT_VAR1 VAR1 yes 1467 736 760 31.561159 288.940237 160.250698 2.20479993 0.060605 181 70 17956 YLR185W intron no 459 101 118 36.734552 333.282019 185.0082855 2.267191178 -0.208166 181 71 19210 YPL081W intron no 601 361 378 31.1441 316.679104 173.911602 2.240328556 -0.122064 181 72 19862 Negative Control no 60 NA #VALUE! 35.038487 299.607029 167.322758 2.223555014 0.064637 181 73 17050 YGR214W intron no 555 141 156 65.040677 311.098834 188.0697555 2.27431896 0.112908 181 74 5087 snR11 snR11 yes 458 36 53 30.390256 299.694653 165.0424545 2.217595674 -0.046156 181 75 3125 Ser4 SerGCT tRNA yes 301 31 i9 63.410057 310.336426 186.8732415 2.271547119 0.11005 181 76 5892 snR36 5_flank no 555 32.383212 317.344168 174.86369 2.242699639 -0.110133 181 77 20094 YDL029W spliced yes 40 1 15 65.776162 309.730796 187.753479 2.273587993 0.128064 181 78 8085 snoRNA cluster 2 3_flank no 739 661 680 32.670592 301.709951 167.1902715 2.223211003 0.017057 181 79 18874 YNR053C intron no 631 461 477 37.053147 306.001002 171.5270745 2.234332681 0.031239 181 80 14305 MT_VAR1 VAR1 yes 1467 781 802 30.966855 301.571729 166.269292 2.220812047 -0.038026 181 81 20304 YER003C spliced yes 40 9 23 65.199729 298.783598 181.9916635 2.260051495 0.215908 181 82 12630 MT_15S 15S yes 1848 1201 1218 33.448768 297.424321 165.4365445 2.21863145 0.063482 181 83 12308 5S rRNA NTS2 no 1420 496 512 37.919745 308.249372 173.0845585 2.238258325 0.012895 181 84 1231 Ile1 IleAAT 3_flank no 274 31.67707 323.204624 177.440847 2.249053602 -0.164484 181 85 8767 LSR1 / U2 RNA U2 yes 1375 476 490 78.731178 334.873573 206.8023755 2.315555523 0.017172 181 86 16825 YGL178W intron no 740 281 293 143.342229 491.983702 317.6629655 2.501966586 -0.404822 181 87 11113 "rRNA(18S,5.8S,25S)" 18S yes 7956 2451 2466 70.939685 329.041309 199.990497 2.30100936 0.009253 181 88 4636 snR3 snR3 yes 395 96 112 36.703357 298.745594 167.7244755 2.224596442 0.090974 181 89 20714 YJL041W spliced yes 40 13 33 32.38839 310.119511 171.2539505 2.233640599 -0.053154 181 90 20226 YDR129C spliced yes 40 9 30 30.219125 307.283736 168.7514305 2.227247463 -0.098096 181 91 635 Gln2 GlnTTG_i 5_flank no 272 32.407641 376.596344 204.5019925 2.310697544 -0.561004 181 92 13784 MT_COB intronic no 7308 946 972 32.371403 317.887663 175.129533 2.24335939 -0.114512 181 93 1223 Ile1 IleAAT 3_flank no 274 32.319774 279.109939 155.7148565 2.19233005 0.149137 181 94 5365 snR30 3_flank no 801 32.257618 296.333259 164.2954385 2.215625506 0.03688 181 95 9020 snR17a / U3a U3a yes 690 386 407 32.182213 307.811994 169.9971035 2.230441522 -0.037341 181 96 15205 MT_COX3 cox3 no 1010 496 512 47.37159 276.791747 162.0816685 2.209733899 0.335742 181 97 1880 Leu9 LeuTAG_ii 3_flank no 301 9167.891847 10656.91217 9912.402007 3.996178907 -0.611989 181 98 2873 Pro7 ProTGG_vi 3_flank no 303 33.925265 312.897229 173.411247 2.239077261 -0.055995 181 99 1999 Lys3 LysTTT_i 5_flank no 296 31.529369 303.563455 167.546412 2.224135132 -0.031348 181 100 2342 Phe3 PheGAA_iii tRNA/intron no 291 36 i16 35.479132 314.646187 175.0626595 2.243193522 -0.051226 181 101 17373 YIL052C intron no 572 361 377 37.199363 259.631144 148.4152535 2.171478538 0.429165 181 102 11169 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2731 2746 1482.529579 900.99318 1191.76138 3.076189307 1.137757 181 103 21586 copy of SH6043 no 586 30.126453 301.812078 165.9692655 2.220027672 -0.068223 181 104 4810 snR5 3_flank no 404 31.782844 330.97836 181.380602 2.258590839 -0.22184 182 2 2068 Lys4 LysTTT_ii tRNA yes 296 6 22 44.514824 334.545345 189.5300845 2.277678156 -0.189055 182 3 21394 Pro2_7 spliced yes 40 9 23 44.265513 299.211864 171.7386885 2.234868142 0.112443 182 4 5552 snR33 snR33 yes 383 46 65 30.379239 306.796519 168.587879 2.226826347 -0.089656 182 5 2123 Met1 MetCAT_i tRNA yes 273 1 15 61.322897 330.899811 196.111354 2.292502738 -0.06412 182 6 16662 YFR032C intron no 431 121 136 77.325503 371.193489 224.259496 2.350750842 -0.234686 182 7 12136 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7566 7579 70.268977 350.376479 210.322728 2.322886206 -0.146713 182 8 20004 YBR078W spliced yes 40 21 38 31.686724 287.857289 159.7720065 2.203500689 0.071664 182 9 19054 YOR234C intron no 627 461 477 35.352297 323.407927 179.380112 2.253774291 -0.127637 182 10 17864 YLL050C intron no 279 81 102 27.745122 306.831966 167.288544 2.223466201 -0.196953 182 11 17385 YIL069C exon/intron no 509 41 60 54.302313 566.002518 310.1524155 2.491575168 -1.414039 182 12 2439 Phe5 PheGAA_v 5_flank no 291 50.705144 332.167041 191.4360925 2.282023821 -0.136369 182 13 615 Gln1 GlnCTG 3_flank no 272 35.735103 306.186023 170.960563 2.232895939 0.019109 182 14 354 Arg5 ArgTCT 3_flank no 272 173.880735 448.468077 311.174406 2.493003869 -0.049489 182 15 4469 U3b (snR17b) 5_flank no 662 30.718089 326.119321 178.418705 2.251440383 -0.199399 182 16 18150 YLR406C intron/exon no 449 381 402 29.16775 302.596694 165.882222 2.219799844 -0.106773 182 17 17609 YJL205C 3_exon no 243 201 217 31.574537 289.905603 160.74007 2.206124153 0.054906 182 18 8844 LSR1 / U2 RNA U2 yes 1375 861 877 49.311672 346.570482 197.941077 2.296535929 -0.254521 182 19 3286 Thr2 ThrCGT tRNA yes 272 31 43 42.580816 314.101035 178.3409255 2.251251016 -0.02629 182 20 15765 YCR031C 3_exon no 407 381 397 36.672676 309.811372 173.242024 2.238653249 -0.004281 182 21 1158 His1 HisGTG tRNA yes 272 10 27 30.613082 311.353033 170.9830575 2.232953079 -0.108793 182 22 13507 MT_COX1 intronic no 13084 11806 11823 30.700359 294.997918 162.8491385 2.211785465 -0.006472 182 23 19002 YOR122C intron no 309 221 240 30.749547 296.885168 163.8173575 2.214359916 -0.016542 182 24 19512 ACT1 ACT1 yes 401 141 162 30.789149 298.062345 164.425747 2.215969824 -0.022484 182 25 10173 RUF6 RUF6 yes 1251 711 723 71.958942 309.29348 190.626211 2.280182616 0.167871 182 26 20160 YDL130W spliced yes 40 13 27 36.192546 295.396192 165.794369 2.219569776 0.113035 182 27 11226 "rRNA(18S,5.8S,25S)" ITS1 no 7956 3016 3034 33.204586 303.025197 168.1148915 2.225606185 0.014342 182 28 17996 YLR287C intron no 530 101 117 46.239488 329.870845 188.0551665 2.274285269 -0.142574 182 29 19742 Negative Control no 60 NA #VALUE! 55.346711 303.492932 179.4198215 2.25387042 0.123325 182 30 3465 Trp1 TrpCCA 3_flank no 306 35.281111 329.976731 182.628921 2.261569553 -0.184004 182 31 20811 YKL186C spliced yes 40 13 30 36.865454 299.64197 168.253712 2.225964654 0.085395 182 32 20710 YJL024C spliced yes 40 21 38 37.367871 314.34764 175.8577555 2.245161526 -0.043181 182 33 16259 YDR424C exon/intron no 196 41 57 33.297475 311.942537 172.620006 2.237091127 -0.056177 182 34 4022 SRP SRP yes 875 1 17 35.889885 295.318452 165.6041685 2.219071264 0.110208 182 35 19407 YPR098C exon/intron no 196 41 58 31.529814 302.775228 167.152521 2.223112931 -0.026546 182 36 11229 "rRNA(18S,5.8S,25S)" ITS1/5.8S no 7956 3031 3054 31.642858 314.858705 173.2507815 2.238675202 -0.100277 182 37 332 Arg5 ArgTCT 5_flank/tRNA no 272 38.608732 298.481437 168.5450845 2.226716091 0.104512 182 38 21692 copy of SH10452 no 1151 34.001466 312.525732 173.263599 2.238707331 -0.05213 182 39 19833 Negative Control no 60 NA #VALUE! 38.585393 285.651131 162.118262 2.209831939 0.222447 182 40 5175 snR13 snR13 yes 324 31 47 33.918868 297.259552 165.58921 2.219032034 0.07063 182 41 1595 Leu4 LeuCAA_iv 3_flank no 314 45.313449 290.258177 167.785813 2.224755237 0.19911 182 42 13308 MT_COX1 ai5a no 13084 8821 8843 31.407526 305.070232 168.238879 2.225926366 -0.044507 182 43 20881 YLR211C spliced yes 40 9 26 33.507445 313.613065 173.560255 2.23945028 -0.066773 182 44 16473 YER102W intron no 460 101 113 49.125447 294.100978 171.6132125 2.234550721 0.175285 182 45 3022 Ser2 SerAGA_ii tRNA/3_flank no 282 36.393831 325.296755 180.845293 2.25730721 -0.141257 182 46 3681 Val2 ValAAC_ii 3_flank no 274 32.756426 279.636286 156.196356 2.193670898 0.159682 182 47 20932 YLR388W spliced yes 40 17 34 34.657702 314.919154 174.788428 2.242512676 -0.063069 182 48 20031 YBR181C spliced yes 40 13 31 29.963712 289.956314 159.960013 2.204011431 -0.002097 182 49 6372 snR43 snR43 yes 409 101 116 36.129412 288.622222 162.375817 2.210521349 0.169644 182 50 18662 YNL112W intron no 1102 421 438 35.764674 320.381693 178.0731835 2.250598523 -0.10031 182 51 20526 YGR118W spliced yes 40 13 28 38.607347 302.439026 170.5231865 2.23178344 0.067706 182 52 18068 YLR344W intron no 547 121 133 49.890747 304.380654 177.1357005 2.248306099 0.08839 182 53 17984 YLR275W exon/intron no 190 41 59 30.7329 294.685087 162.7089935 2.211411559 -0.003413 182 54 16781 YGL103W intron no 611 301 317 30.580412 298.413302 164.496857 2.216157604 -0.031754 182 55 17053 YGR214W intron no 555 201 220 29.443881 308.819798 169.1318395 2.228225372 -0.134415 182 56 21748 copy of SH12763 no 13084 39.727388 298.885477 169.3064325 2.228673459 0.103341 182 57 5132 snR11 3_flank no 458 36.586404 294.860462 165.723433 2.219383921 0.122003 182 58 1349 Ile3 IleTAT_ii tRNA/3_flank no 333 34.513788 287.312897 160.9133425 2.206592056 0.161938 182 59 11076 "rRNA(18S,5.8S,25S)" 18S yes 7956 2266 2283 229.65074 476.151392 352.901066 2.54765297 0.08464 182 60 167 Arg2 ArgACG_ii 5_flank no 273 30.440206 311.921894 171.18105 2.233455686 -0.118067 182 61 1848 Leu9 LeuTAG_ii 5_flank no 301 36.744233 307.060134 171.9021835 2.235281393 0.02082 182 62 3388 Thr4 ThrTGT_ii tRNA yes 272 26 43 28.551739 291.512519 160.032129 2.204207183 -0.084224 182 63 3493 Tyr1 TyrGTA_i tRNA yes 289 6 20 49.713786 295.52425 172.619018 2.237088642 0.165465 182 64 7985 snoRNA cluster 2 snR57 yes 739 161 178 31.003686 293.811276 162.407481 2.21060603 0.011215 182 65 21734 copy of SH12339 no 1420 35.487874 313.653439 174.5706565 2.241971245 -0.043315 182 66 10304 RUF7 RUF7 yes 700 131 147 31.469423 304.91211 168.1907665 2.22580215 -0.041497 182 67 10103 RUF6 RUF6 yes 1251 361 378 33.801753 288.152792 160.9772725 2.206764565 0.137248 182 68 15302 YAL001C 5_exon no 190 21 39 31.738034 296.797452 164.267743 2.21555229 0.017042 182 69 12844 MT_COX1 ai1 no 13084 1861 1880 30.624663 305.488521 168.056592 2.225455552 -0.073388 182 70 8556 snR19 / U1 RNA U1 yes 868 276 292 45.494482 289.581846 167.538164 2.224113752 0.206077 182 71 12647 MT_15S 15S yes 1848 1456 1481 29.164861 296.742021 162.953441 2.212063536 -0.074888 182 72 17417 YIL111W 5_exon no 188 1 18 31.002832 287.031561 159.0171965 2.201444093 0.054169 182 73 6030 snR37 snR37 yes 586 66 84 30.753439 306.924238 168.8388385 2.227472356 -0.077639 182 74 20523 YGR118W spliced yes 40 1 15 34.742723 292.259406 163.5010645 2.213520585 0.12249 182 75 504 Asp2 AspGTC_ii 3_flank no 272 32.61245 280.432608 156.522529 2.194576856 0.149847 182 76 17538 YJL177W intron no 417 161 177 34.760776 310.801609 172.7811925 2.237496467 -0.029314 182 77 20262 YDR397C spliced yes 40 17 29 49.619614 280.273343 164.9464785 2.217343048 0.308058 182 78 13325 MT_COX1 ai5a no 13084 9076 9095 32.029573 301.622425 166.825999 2.222263734 -0.003101 182 79 1381 Leu1 LeuCAA_i 5_flank no 315 31.217835 320.120662 175.6692485 2.244695743 -0.146836 182 80 20579 YHR016C spliced yes 40 5 21 46.440483 284.992988 165.7167355 2.219366369 0.252822 182 81 11846 "rRNA(18S,5.8S,25S)" 25S yes 7956 6116 6133 116.370228 345.700204 231.035216 2.363678183 0.178577 182 82 14242 MT_Ser tRNA yes 290 106 122 38.381495 321.428199 179.904847 2.255042864 -0.102974 182 83 16093 YDR025W 3_exon no 439 401 417 40.797245 291.711907 166.254576 2.220773608 0.173646 182 84 15118 MT_COX 2; ORF1 3_flank no 2427 2371 2399 30.07151 308.894777 169.4831435 2.229126511 -0.112837 182 85 3962 RNase MRP RNaseMRP yes 540 226 240 32.429613 276.24628 154.3379465 2.188472718 0.171668 182 86 9314 RUF1 RUF1 yes 750 146 163 32.584265 322.311042 177.4476535 2.249070261 -0.14595 182 87 695 Gln3 GlnTTG_ii tRNA yes 272 6 23 32.712164 310.036586 171.374375 2.233945884 -0.048374 182 88 19978 YBL087C spliced yes 40 21 36 33.914414 290.628727 162.2715705 2.210242439 0.12497 182 89 17220 YHR041C intron no 201 81 98 30.616368 299.773095 165.1947315 2.217996192 -0.038898 182 90 21410 Ser3 spliced yes 40 17 31 36.178233 284.307457 160.242845 2.204778647 0.207427 182 91 12198 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7876 7894 35.007671 311.522126 173.2648985 2.238710588 -0.032106 182 92 18850 YNL312W 3_exon no 208 181 196 41.591243 280.361247 160.976245 2.206761793 0.286297 182 93 14071 MT_COB bi4 no 7308 5251 5269 39.247602 342.406726 190.827164 2.280640196 -0.274575 182 94 10843 "rRNA(18S,5.8S,25S)" 18S yes 7956 1101 1123 34.704611 302.889336 168.7969735 2.227364656 0.033746 182 95 2579 Pro2 ProTGG_i 3_flank no 303 34.585634 292.347737 163.4666855 2.213429257 0.119867 182 96 14131 MT_COB intronic no 7308 6151 6177 32.259823 323.850801 178.055312 2.250554935 -0.161871 182 97 9375 RUF1 RUF1 yes 750 451 467 36.456938 302.437283 169.4471105 2.229034167 0.057833 182 98 11359 "rRNA(18S,5.8S,25S)" 25S yes 7956 3681 3698 3740.599293 2229.40485 2985.002072 3.474944637 0.891987 182 99 16807 YGL137W intron no 300 221 238 33.759839 310.204126 171.9819825 2.235482951 -0.036656 182 100 5751 snR35 5_flank no 740 31.279661 298.747007 165.013334 2.217519039 -0.010204 182 101 6749 snR50 5_flank no 290 35.102313 262.009086 148.5556995 2.171889319 0.351788 182 102 7575 snR189 5_flank no 389 32.560724 260.903185 146.7319545 2.166524702 0.267646 182 103 12174 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7756 7773 42.432852 310.428359 176.4306055 2.246573925 0.005476 182 104 21563 copy of SH4993 no 445 41.90896 334.28473 188.096845 2.274381511 -0.199382 183 2 10689 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 331 349 34.72324 299.690724 167.206982 2.223254408 0.060205 183 3 19022 YOR182C intron no 511 321 338 32.572323 293.61099 163.0916565 2.212431744 0.06401 183 4 6097 snR37 3_flank no 586 34.338669 276.672141 155.505405 2.191745489 0.228562 183 5 7106 snR63 snR63 yes 455 36 54 28.335579 287.285672 157.8106255 2.198136241 -0.076582 183 6 13760 MT_COB intronic no 7308 586 608 28.163822 290.004143 159.0839825 2.201626455 -0.098571 183 7 14199 MT_COB exon6 yes 7308 7171 7192 31.802824 289.953751 160.8782875 2.206497435 0.062123 183 8 15908 YDL083C intron no 532 241 260 30.693739 323.497848 177.0957935 2.248208246 -0.179782 183 9 166 Arg2 ArgACG_ii 5_flank no 273 33.415262 287.339608 160.377435 2.205143263 0.130442 183 10 10442 RUF8 RUF8 yes 1151 136 152 35.258426 318.812639 177.0355325 2.248060442 -0.087894 183 11 2066 Lys4 LysTTT_ii 5_flank/tRNA no 296 36.259407 313.286983 174.773195 2.242474826 -0.036487 183 12 9935 RUF5-1 RUF5-1 yes 975 481 499 31.688399 282.245059 156.966729 2.195807608 0.107971 183 13 4169 SRP 3_flank no 875 115.766245 489.400919 302.583582 2.48084536 -0.571007 183 14 13691 MT_ORF 5 ORF5/3_flank no 331 211 237 30.360704 295.977817 163.1692605 2.212638345 -0.024195 183 15 9117 snR14 / U4 RNA 3_flank no 360 30.747575 269.709758 150.2286665 2.176752812 0.134416 183 16 9916 RUF5-1 RUF5-1 yes 975 386 405 31.161036 292.273026 161.717031 2.208755759 0.026166 183 17 1122 Gly4 GlyTCC 3_flank no 272 33.573771 294.940679 164.257225 2.215524481 0.08575 183 18 11909 "rRNA(18S,5.8S,25S)" 25S yes 7956 6431 6448 10513.54782 19652.11515 15082.83148 4.178482879 -1.463544 183 19 18304 YML073C intron no 515 281 296 94.834304 410.64611 252.740207 2.402674337 -0.340634 183 20 7247 snR65 snR65 yes 300 11 33 30.397665 288.300684 159.3491745 2.202349818 0.025462 183 21 857 Glu2 GluTTC_i tRNA yes 272 52 64 36.770727 281.412978 159.0918525 2.201647939 0.239443 183 22 13312 MT_COX1 ai5a no 13084 8881 8903 34.800183 308.927019 171.863601 2.235183907 -0.013894 183 23 14236 MT_Ser 5_flank no 290 16 28 57.937048 324.892381 191.4147145 2.28197532 -0.038065 183 24 9244 snR6 / U6 RNA U6 yes 312 91 110 32.852265 321.075735 176.964 2.247884926 -0.133068 183 25 18587 YNL050C intron no 191 81 103 32.94039 314.325672 173.633031 2.239632347 -0.07945 183 26 3720 Val3 ValCAC 3_flank no 273 30.973525 293.542173 162.257849 2.210205714 0.011886 183 27 17145 YHR010W 3_exon no 661 621 635 39.626598 277.065324 158.345961 2.19960699 0.308892 183 28 2598 Pro3 ProTGG_ii 5_flank no 303 31.418351 306.942807 169.180579 2.228350507 -0.055414 183 29 14300 MT_VAR1 VAR1 yes 1467 706 734 29.600432 295.658595 162.6295135 2.211199363 -0.04869 183 30 13329 MT_COX1 ai5a no 13084 9136 9160 29.968568 314.304064 172.136316 2.235872504 -0.148381 183 31 20237 YDR305C spliced yes 40 9 28 32.571882 298.845179 165.7085305 2.219344866 0.031463 183 32 3916 RNase MRP 5_flank/RNaseMRP no 540 35.219428 281.915604 158.567516 2.200214223 0.217185 183 33 14912 MT_Tyr 5_flank/tRNA no 284 76 102 31.072496 305.581571 168.3270335 2.22615387 -0.058789 183 34 10805 "rRNA(18S,5.8S,25S)" 18S yes 7956 911 929 1983.527655 2150.528383 2067.028019 3.315346364 0.141941 183 35 1865 Leu9 LeuTAG_ii tRNA yes 301 e12 52 41.778707 289.867538 165.8231225 2.219645089 0.193538 183 36 2040 Lys3 LysTTT_i 3_flank no 296 38.437553 305.801965 172.119759 2.235830729 0.036406 183 37 3711 Val3 ValCAC tRNA yes 273 36 48 76.86497 331.125885 203.9954275 2.309620433 0.032498 183 38 21887 copy of SH18602 no 549 31.607958 312.001096 171.804527 2.235034603 -0.079226 183 39 8220 snoRNA cluster 3; snR51 yes 743 611 632 33.904501 304.930832 169.4176665 2.228958696 0.007487 183 40 5913 snR36 snR36 yes 555 21 40 38.475438 339.250276 188.862857 2.276146555 -0.252001 183 41 13717 MT_Glu (and 5_flank processing site for COB) 3_flank no 368 286 312 33.815302 292.293921 163.0546115 2.212333086 0.110995 183 42 18292 YML073C exon/intron no 515 41 58 35.989401 305.959957 170.974679 2.232931797 0.02387 183 43 19816 Negative Control no 60 NA #VALUE! 35.822525 271.283922 153.5532235 2.186258938 0.308948 183 44 4876 snR8 snR8 yes 390 161 175 42.414763 294.242068 168.3284155 2.226157435 0.153066 183 45 12333 5S rRNA NTS2 no 1420 621 641 33.140696 310.829265 171.9849805 2.235490521 -0.049296 183 46 8050 snoRNA cluster 2 intergenic no 739 486 503 32.905028 313.737608 173.321318 2.238851983 -0.075267 183 47 3160 Ser5 SerTGA 5_flank no 282 30.435622 305.400267 167.9179445 2.225097109 -0.079322 183 48 20187 YDL219W spliced yes 40 1 20 32.359421 324.870006 178.6147135 2.251917231 -0.16836 183 49 16196 YDR381C intron no 294 101 122 32.045012 283.453614 157.749313 2.197967477 0.11179 183 50 6994 snR60 snR60 yes 304 51 72 29.567692 312.927642 171.247667 2.233624664 -0.154363 183 51 335 Arg5 ArgTCT tRNA yes 272 11 25 39.920913 299.24524 169.5830765 2.22938251 0.100423 183 52 12394 5S rRNA NTS2 no 1420 926 938 71.46886 317.732259 194.6005595 2.289144085 0.098621 183 53 21682 copy of SH10032 no 1251 30.862105 295.786688 163.3243965 2.213051062 -0.005902 183 54 1277 Ile2 IleTAT_i intron yes 333 i44 i60 30.684545 285.434399 158.059472 2.198820527 0.053667 183 55 21819 copy of SH15999 no 432 59.795967 330.555967 195.175967 2.29042634 -0.07049 183 56 11685 "rRNA(18S,5.8S,25S)" 25S yes 7956 5311 5331 38.822422 295.943642 167.383032 2.22371143 0.128874 183 57 5335 snR30 snR30 yes 801 526 542 33.623137 300.189724 166.9064305 2.222473069 0.042763 183 58 11957 "rRNA(18S,5.8S,25S)" 25S yes 7956 6671 6684 1342.213633 1627.114013 1484.663823 3.171628126 0.070554 183 59 5347 snR30 snR30/3_flank no 801 34.74327 285.631488 160.187379 2.204628295 0.179187 183 60 2481 Phe5 PheGAA_v 3_flank no 291 45.27403 295.341206 170.307618 2.231234075 0.151366 183 61 1387 Leu1 LeuCAA_i tRNA yes 315 6 19 54571.42203 19670.16045 37120.79124 4.569617225 0.551076 183 62 20560 YHR001W-A spliced yes 40 5 21 68.89485 332.485323 200.6900865 2.30252592 -0.028688 183 63 16643 YFR024C 3_exon no 218 201 216 82.905563 318.200358 200.5529605 2.302229077 0.164822 183 64 3738 Val4 ValTAC 5_flank no 274 35.45838 305.083315 170.2708475 2.231140298 0.024806 183 65 18952 YOL127W intron no 514 221 238 31.435219 276.673415 154.054317 2.187673873 0.134837 183 66 5399 snR31 snR31 yes 425 61 77 53.259178 335.543933 194.4015555 2.288699736 -0.14797 183 67 7753 snoRNA cluster1 snR76 yes 1574 561 575 283.715615 534.422122 409.0688685 2.61179643 0.071452 183 68 3402 Thr4 ThrTGT_ii 3_flank no 272 38.397708 279.075051 158.7363795 2.200676471 0.277987 183 69 15204 MT_COX3 cox3 no 1010 481 497 31.848563 302.384135 167.116349 2.223018939 -0.013663 183 70 16120 YDR064W intron no 639 321 338 38.152768 277.260396 157.706582 2.197849819 0.291459 183 71 18677 YNL112W intron no 1102 721 740 31.45312 311.01208 171.2326 2.233586451 -0.078508 183 72 11659 "rRNA(18S,5.8S,25S)" 25S yes 7956 5181 5196 7819.903447 14072.92882 10946.41613 4.039271954 -1.269097 183 73 7915 snoRNA cluster1 intergenic/snR72 no 1574 1371 1388 33.071291 311.889612 172.4804515 2.23673988 -0.05858 183 74 20015 YBR084C-A spliced yes 40 17 35 30.839884 318.270062 174.554973 2.241932226 -0.141541 183 75 10242 RUF6 3_flank no 1251 30.829575 288.735979 159.782777 2.203529965 0.037417 183 76 1229 Ile1 IleAAT 3_flank no 274 30.939279 313.498419 172.218849 2.236080682 -0.110368 183 77 5239 snR30 snR30 yes 801 46 60 33.258674 275.840502 154.549588 2.189067852 0.200735 183 78 11807 "rRNA(18S,5.8S,25S)" 25S yes 7956 5921 5938 10011.10316 6878.318691 8444.710924 3.926584788 0.224829 183 79 16985 YGR118W exon/intron no 420 41 58 29.551699 316.967431 173.259565 2.23869722 -0.178544 183 80 21847 copy of SH17382 no 572 31.981459 309.193168 170.5873135 2.23194673 -0.050996 183 81 5002 snR10 snR10 yes 445 41 55 36.616423 264.77091 150.6936665 2.178095 0.376579 183 82 6323 snR42 3_flank no 551 30.268298 273.25136 151.759829 2.181156829 0.092634 183 83 8808 LSR1 / U2 RNA U2 yes 1375 681 695 32.668978 304.337146 168.503062 2.226607797 -0.003068 183 84 6772 snR50 snR50 yes 290 36 55 30.617327 296.23304 163.4251835 2.213318981 -0.016993 183 85 20120 YDL079C spliced yes 40 1 18 50.959809 313.655175 182.307492 2.260804517 0.014363 183 86 1246 Ile2 IleTAT_i 5_flank no 333 33.113514 292.934345 163.0239295 2.212251357 0.085465 183 87 15237 MT_COX3 3_flank no 1010 976 1004 30.952894 318.6449 174.798897 2.242538688 -0.139889 183 88 8303 snoRNA cluster4 intergenic no 638 301 317 35.509733 311.839263 173.674498 2.239736052 -0.028724 183 89 17642 YJR145C intron no 356 81 97 46.82899 324.321087 185.5750385 2.268519559 -0.094673 183 90 14349 MT_ORF9; ORF10 5_flank no 578 1 23 33.208781 307.228179 170.21848 2.231006708 -0.019647 183 91 14476 MT_21S 21S_rRNA3 yes 4639 1351 1375 30.870741 294.985442 162.9280915 2.21199597 -0.000615 183 92 6208 snR40 3_flank no 297 35.22417 296.580904 165.902537 2.219853027 0.091914 183 93 8358 snoRNA cluster4 3_flank no 638 576 590 37.297354 278.095324 157.696339 2.197821611 0.274639 183 94 15116 MT_COX 2; ORF1 orf3/3_flank no 2427 2341 2362 33.79525 331.986585 182.8909175 2.262192139 -0.2049 183 95 12206 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7916 7936 36.947303 301.460465 169.203884 2.228410328 0.07136 183 96 13909 MT_COB bi3 no 7308 2821 2840 32.364963 304.171304 168.2681335 2.226001877 -0.007717 183 97 8825 LSR1 / U2 RNA U2 yes 1375 766 787 34.353508 296.880985 165.6172465 2.21910556 0.079051 183 98 14614 MT_21S Sce1 no 4639 3421 3440 31.929898 299.740248 165.835073 2.219676386 0.00517 183 99 11227 "rRNA(18S,5.8S,25S)" ITS1 no 7956 3021 3041 31.630195 316.693243 174.161719 2.240952703 -0.1148 183 100 16488 YER102W intron/exon no 460 401 422 33.396023 343.683195 188.539609 2.275402602 -0.302732 183 101 2206 Phe1 PheGAA_i 5_flank no 292 32.965217 277.734538 155.3498775 2.191310915 0.178881 183 102 20255 YDR381W spliced yes 40 13 31 30.43193 286.129074 158.280502 2.199427419 0.039689 183 103 16505 YER117W intron no 571 281 297 32.039101 276.098671 154.068886 2.187714942 0.160002 183 104 16490 YER102W 3_exon no 460 441 457 70.720635 333.716413 202.218524 2.305820936 -0.026733 184 2 13630 MT_ATP6 ATP6 yes 980 256 280 28.965762 312.350465 170.6581135 2.232126941 -0.172441 184 3 10271 RUF7 5_flank no 700 30.778771 299.31031 165.0445405 2.217601163 -0.030529 184 4 9103 snR14 / U4 RNA U4 yes 360 131 148 43.316347 325.067698 184.1920225 2.265270817 -0.117986 184 5 5687 snR34 snR34 yes 750 356 372 47.845262 339.99975 193.922506 2.287628215 -0.21393 184 6 13024 MT_COX1 ai2 no 13084 4561 4580 30.128979 311.770166 170.9495725 2.232868019 -0.127903 184 7 16851 YGL183C intron no 183 61 78 33.737755 274.142998 153.9403765 2.187352544 0.227034 184 8 6499 snR46 5_flank/snR46 no 397 42.106855 316.680525 179.39369 2.253807163 -0.050318 184 9 11241 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3091 3108 47581.4755 22660.16391 35120.8197 4.545564644 0.148219 184 10 16677 YGL030W 5_exon no 330 1 18 42.887191 323.558436 183.2228135 2.262979548 -0.106639 184 11 2353 Phe3 PheGAA_iii tRNA/3_flank no 291 44.894174 310.462129 177.6781515 2.249634027 0.013208 184 12 15852 YDL075W 3_exon no 521 481 497 44.189478 312.149972 178.169725 2.25083391 -0.003917 184 13 10292 RUF7 RUF7 yes 700 71 86 43.602719 308.744886 176.1738025 2.245941328 0.024265 184 14 15589 YBR084C intron/exon no 606 541 558 59.715227 330.567434 195.1413305 2.290349262 -0.07106 184 15 17721 YKL156W 5_exon no 450 1 17 51.539039 308.512912 180.0259755 2.255335173 0.060776 184 16 9130 snR7 U5 RNA 5_flank no 415 45.193748 329.228862 187.211305 2.272332071 -0.14305 184 17 5623 snR34 snR34 yes 750 36 53 31.624021 288.470255 160.047138 2.204247912 0.06568 184 18 16116 YDR064W intron no 639 241 256 32.980717 297.982005 165.481361 2.218749084 0.049814 184 19 15282 MT_9S 9S yes 701 406 418 42.524307 323.741284 183.1327955 2.262766125 -0.109399 184 20 11660 "rRNA(18S,5.8S,25S)" 25S yes 7956 5186 5199 49.042623 310.301908 179.6722655 2.254481044 0.033319 184 21 11844 "rRNA(18S,5.8S,25S)" 25S yes 7956 6106 6124 303.205578 585.822579 444.5140785 2.64788552 -0.026323 184 22 13014 MT_COX1 ai2 no 13084 4411 4432 30.654904 321.090362 175.872633 2.245198265 -0.164067 184 23 2911 Pro8 ProTGG_vii tRNA yes 305 44 56 47.482274 304.032301 175.7572875 2.244913341 0.07926 184 24 9043 snR17a / U3a 3_flank no 690 30.824287 304.691002 167.7576445 2.22468232 -0.06179 184 25 3342 Thr3 ThrTGT_i tRNA yes 272 56 71 895.045747 1380.230834 1137.638291 3.056004201 -0.193055 184 26 7458 snR71 5_flank no 290 35.315033 327.57947 181.4472515 2.258750394 -0.163543 184 27 9992 RUF5-1 RUF5-1/3_flank no 975 39.821103 292.719127 166.270115 2.220814197 0.161804 184 28 20770 YKL002W spliced yes 40 13 32 33.741813 338.801295 186.271554 2.270146538 -0.261818 184 29 19450 CYC1 CYC1 yes 400 101 115 44.97832 277.440147 161.2092335 2.207389913 0.32271 184 30 10142 RUF6 RUF6 yes 1251 556 573 74.309399 424.273498 249.2914485 2.396707381 -0.567264 184 31 970 Gly1 GlyCCC_i 3_flank no 272 30.515951 310.868248 170.6920995 2.23221342 -0.109243 184 32 14135 MT_COB intronic no 7308 6211 6228 33.091678 293.468237 163.2799575 2.212932879 0.081424 184 33 16470 YER102W exon/intron no 460 41 58 31.112318 299.043258 165.077788 2.217688641 -0.01763 184 34 266 Arg4 ArgCCT 5_flank no 272 33.561974 306.197669 169.8798215 2.230141796 -0.006963 184 35 13306 MT_COX1 ai5a no 13084 8791 8810 31.386661 310.702363 171.044512 2.233109144 -0.078882 184 36 21043 YMR133W spliced yes 40 21 38 31.436418 307.433383 169.4349005 2.229002872 -0.057754 184 37 2673 Pro4 ProTGG_iii tRNA/intron no 302 32 i9 38.335655 304.912776 171.6242155 2.234578565 0.0443 184 38 20571 YHR010W spliced yes 40 25 37 47.56917 308.629902 178.099536 2.250662788 0.040089 184 39 21912 copy of SH19565 no 401 54.53351 276.937597 165.7355535 2.219415683 0.359669 184 40 9787 RUF4 RUF4 yes 988 711 733 33.830182 336.328978 185.07958 2.267358505 -0.241115 184 41 5201 snR13 3_flank no 324 31.511626 303.315048 167.413337 2.223790053 -0.030428 184 42 3625 Val1 ValAAC_i 3_flank no 274 31.436073 332.078749 181.757411 2.259492128 -0.234585 184 43 18198 YML024W intron no 498 261 277 33.591291 287.553646 160.5724685 2.205671084 0.134558 184 44 8832 LSR1 / U2 RNA U2 yes 1375 801 817 49.340599 331.156424 190.2485115 2.279321268 -0.136576 184 45 1066 Gly3 GlyGCC tRNA3_flank no 271 33.256741 315.302194 174.2794675 2.241246224 -0.083158 184 46 17867 YLL050C intron no 279 141 158 35.312968 308.89738 172.105174 2.235793927 -0.0076 184 47 3347 Thr3 ThrTGT_i 3_flank no 272 32.866353 295.014736 163.9405445 2.214686373 0.064613 184 48 18939 YOL121C 3_exon no 490 441 455 34.841013 297.843261 166.342137 2.221002277 0.076889 184 49 21471 copy of SH1241 no 333 34.543838 311.687819 173.1158285 2.238336779 -0.038942 184 50 21704 copy of SH11079 no 7956 29.867866 288.262507 159.0651865 2.201575139 0.000727 184 51 20511 YGR029W spliced yes 40 5 20 40.32666 284.565326 162.445993 2.210709003 0.241891 184 52 3978 RNase MRP RNaseMRP yes 540 306 323 33.531722 312.619138 173.07543 2.238235419 -0.058629 184 53 401 Asn1 AsnGTT 3_flank no 274 35.362176 292.704104 164.03314 2.214931598 0.12605 184 54 17897 YLR061W 5_exon no 489 1 20 35.134019 307.886288 171.5101535 2.234289836 -0.001601 184 55 3277 Thr2 ThrCGT 5_flank/tRNA no 272 75.083954 347.450103 211.2670285 2.324831724 -0.094346 184 56 3259 Thr1 ThrAGT 3_flank no 273 34.92739 275.061017 154.9942035 2.190315457 0.257065 184 57 16389 YER044C 5_exon no 188 21 37 41.215142 306.379677 173.7974095 2.240043299 0.037503 184 58 4006 SRP 5_flank no 875 30.786223 318.112822 174.4495225 2.241669785 -0.14245 184 59 19079 YOR293W intron no 537 341 358 30.842309 283.464059 157.153184 2.196323184 0.071776 184 60 12124 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7506 7524 33.011275 299.569507 166.290391 2.220867154 0.04027 184 61 2894 Pro8 ProTGG_vii 5_flank/tRNA no 305 44.728367 311.436143 178.082255 2.250620646 0.004089 184 62 13954 MT_COB bi3 no 7308 3496 3513 31.110142 316.422582 173.766362 2.239965709 -0.121711 184 63 119 Arg1 ArgACG_i 5_flank no 273 85.637945 334.684404 210.1611745 2.322552487 0.063281 184 64 13972 MT_COB bi3 no 7308 3766 3785 29.30846 296.042007 162.6752335 2.211321439 -0.064111 184 65 15853 YDL075W 3_exon no 521 501 516 40.261262 294.725138 167.4932 2.22399718 0.143725 184 66 17031 YGR183C intron no 313 61 75 76.554495 328.782035 202.668265 2.30678575 0.047569 184 67 11008 "rRNA(18S,5.8S,25S)" 18S yes 7956 1926 1939 6205.720575 5218.961168 5712.340872 3.756814115 0.102453 184 68 16219 YDR381W intron no 866 281 298 32.036775 319.401004 175.7188895 2.24481845 -0.130552 184 69 8379 snoRNA cluster 5 5_flank no 586 61 82 31.988641 304.812576 168.4006085 2.226343656 -0.023807 184 70 20026 YBR119W spliced yes 40 17 33 34.000607 300.247191 167.123899 2.223038559 0.046912 184 71 744 Gln4 GlnTTG_iii 5_flank/tRNA no 272 33.767479 336.8884 185.3279395 2.267940897 -0.245928 184 72 20524 YGR118W spliced yes 40 5 21 48.487574 299.958509 174.2230415 2.241105591 0.120016 184 73 4308 telomerase RNA telomerase yes 1501 576 592 35.438016 301.162087 168.3000515 2.226084249 0.056538 184 74 8391 snoRNA cluster 5 snR190 yes 586 121 136 50.177934 296.660241 173.4190875 2.239096897 0.15762 184 75 6102 snR37 3_flank no 586 52.353539 334.558067 193.455803 2.286581762 -0.145442 184 76 19521 ACT1 ACT1 yes 401 321 343 29.166901 318.613509 173.890205 2.240275119 -0.201767 184 77 6699 snR49 snR49 yes 365 21 36 39.032759 305.548037 172.290398 2.236261074 0.04013 184 78 19384 YPR043W intron no 503 261 275 42.664003 299.195569 170.929786 2.232817749 0.107344 184 79 17426 YIL133C 5_exon no 390 1 18 36.533859 303.769986 170.1519225 2.23083686 0.04784 184 80 19165 YPL075W 3_exon no 851 821 840 30.280809 293.585884 161.9333465 2.209336291 -0.012007 184 81 21249 YPL031C spliced yes 40 17 34 32.765386 308.021668 170.393527 2.231453093 -0.031588 184 82 13331 MT_COX1 ai5a no 13084 9166 9187 30.772568 316.419797 173.5961825 2.239540171 -0.133088 184 83 4888 snR8 3_flank no 390 33.2105 310.791123 172.0008115 2.235530496 -0.048121 184 84 20433 YGL076C spliced yes 40 5 19 33.371219 286.379702 159.8754605 2.203781808 0.135226 184 85 10094 RUF6 RUF6 yes 1251 316 335 31.224181 305.858905 168.541543 2.226706966 -0.055374 184 86 2615 Pro3 ProTGG_ii tRNA/intron no 303 27 i2 31.303729 300.790174 166.0469515 2.220230907 -0.02195 184 87 5694 snR34 snR34 yes 750 391 410 31.348763 320.182716 175.7657395 2.244934226 -0.145582 184 88 7421 snR69 snR69 yes 301 6 20 45.065137 289.661399 167.363268 2.223660147 0.203973 184 89 6872 snR56 5_flank/snR56 no 288 31.320613 297.236372 164.2784925 2.215580709 0.000496 184 90 13965 MT_COB bi3 no 7308 3661 3683 31.238179 324.283478 177.7608285 2.249836066 -0.178496 184 91 10447 RUF8 RUF8 yes 1151 161 178 33.371579 283.42619 158.3988845 2.199752119 0.154325 184 92 19652 SIR1 2.2 SIR1 2.2 yes 401 161 183 30.94833 302.734025 166.8411775 2.222303246 -0.045733 184 93 9217 snR6 / U6 RNA 5_flank no 312 44.214842 329.118566 186.666704 2.271066859 -0.147543 184 94 6025 snR37 snR37 yes 586 41 60 33.912684 306.846695 170.3796895 2.231417822 -0.007892 184 95 15712 YBR220C intron no 521 401 413 34.81124 278.782815 156.7970275 2.195337825 0.228842 184 96 451 Asp1 AspGTC_i 3_flank no 271 36.791405 276.838399 156.814902 2.195387331 0.280179 184 97 6584 snR47 snR47 yes 299 26 40 34.349343 277.977377 156.16336 2.193579145 0.220221 184 98 20267 YDR424C spliced yes 40 13 29 31.899338 301.921832 166.910585 2.222483879 -0.009182 184 99 19403 YPR063C 3_exon no 186 141 157 48.790991 300.106913 174.448952 2.241668365 0.120243 184 100 12770 MT_COX1 ai1 no 13084 751 768 31.20557 325.595152 178.400361 2.251395729 -0.188905 184 101 8595 snR19 / U1 RNA U1 yes 868 471 488 32.886033 278.154194 155.5201135 2.191786565 0.17359 184 102 19086 YOR293W intron/exon no 537 481 498 36.570288 282.780255 159.6752715 2.203237663 0.225201 184 103 7558 snR79 3_flank no 284 36.059856 297.556934 166.808395 2.222217904 0.093503 184 104 13409 MT_COX1 intronic no 13084 10336 10362 31.505504 354.77401 193.139757 2.285871681 -0.397049 185 2 13124 MT_COX1 ai3 no 13084 6061 6083 29.186557 330.224533 179.705545 2.254561478 -0.266967 185 3 10184 RUF6 RUF6 yes 1251 766 780 38.94931 299.616251 169.2827805 2.228612784 0.094711 185 4 18051 YLR333C intron no 523 301 318 30.741811 283.569801 157.155806 2.19633043 0.067395 185 5 9988 RUF5-1 RUF5-1 yes 975 746 763 44.140151 305.139289 174.63972 2.242143026 0.058232 185 6 19075 YOR293W intron no 537 261 277 39.884455 301.431847 170.658151 2.232127036 0.079997 185 7 8514 snR19 / U1 RNA U1 yes 868 66 88 31.924566 283.394045 157.6593055 2.197719609 0.108244 185 8 17142 YHR010W intron no 661 561 578 35.552385 300.333548 167.9429665 2.22516182 0.064681 185 9 11417 "rRNA(18S,5.8S,25S)" 25S yes 7956 3971 3986 71.751119 337.593742 204.6724305 2.311059347 -0.047405 185 10 8504 snR19 / U1 RNA U1 yes 868 16 35 29.766461 290.009165 159.887813 2.203815362 -0.012602 185 11 2037 Lys3 LysTTT_i 3_flank no 296 29.865458 278.4465 154.155979 2.187960374 0.046736 185 12 19690 Negative Control no 60 NA #VALUE! 31.965889 292.610928 162.2884085 2.210287501 0.050667 185 13 14666 MT_21S 21S_rRNA4 yes 4639 4201 4225 28.394723 319.329896 173.8623095 2.240205444 -0.23392 185 14 7890 snoRNA cluster1 intergenic no 1574 1246 1263 32.598161 315.542106 174.0701335 2.240724262 -0.09332 185 15 13737 MT_COB exon1 yes 7308 241 260 32.985945 303.237183 168.111564 2.225597589 0.009879 185 16 15333 YAL030W 5_exon no 213 1 15 49.418929 331.894918 190.6569235 2.280252581 -0.141872 185 17 6867 snR56 5_flank no 288 29.729403 308.420437 169.07492 2.228079191 -0.121955 185 18 9099 snR14 / U4 RNA U4 yes 360 111 128 38.191499 280.951488 159.5714935 2.20295531 0.259196 185 19 13447 MT_COX1 intronic no 13084 10906 10930 30.280812 323.566094 176.923453 2.247785407 -0.19103 185 20 10086 RUF6 RUF6 yes 1251 276 294 32.548813 304.054579 168.301696 2.226088492 -0.002298 185 21 17011 YGR148C intron no 479 141 158 30.633334 294.142432 162.387883 2.21055362 -0.003408 185 22 5679 snR34 snR34 yes 750 316 332 84.257812 373.150895 228.7043535 2.359274432 -0.198431 185 23 9392 RUF1 RUF1/3_flank no 750 41.347301 308.079187 174.713244 2.242325828 0.022622 185 24 18071 YLR344W intron no 547 181 198 28.870576 275.330875 152.1007255 2.182131286 0.009079 185 25 20256 YDR381W spliced yes 40 17 36 31.111564 327.897228 179.504396 2.254075089 -0.207565 185 26 13062 MT_COX1 intronic no 13084 5131 5148 35.550298 335.783576 185.666937 2.268734573 -0.232052 185 27 4100 SRP SRP yes 875 391 405 35.832454 278.569551 157.2010025 2.196455311 0.253838 185 28 20969 YML026C spliced yes 40 21 38 29.700609 292.179493 160.940051 2.206664135 -0.025971 185 29 2855 Pro7 ProTGG_vi tRNA yes 303 51 65 36.585385 306.527543 171.556464 2.234407086 0.025275 185 30 2837 Pro7 ProTGG_vi 5_flank/tRNA no 303 41.441293 316.265059 178.853176 2.252496657 -0.048986 185 31 17970 YLR185W intron no 459 381 400 32.942449 292.504343 162.723396 2.211449999 0.082762 185 32 20331 YER074W spliced yes 40 17 33 33.235082 304.637435 168.9362585 2.227722871 0.001609 185 33 1276 Ile2 IleTAT_i intron yes 333 i39 i56 31.172566 299.25186 165.212213 2.218042149 -0.016894 185 34 5550 snR33 snR33 yes 383 36 60 31.274846 325.411451 178.3431485 2.251256429 -0.186592 185 35 3101 Ser4 SerGCT 5_flank no 301 31.313658 300.113971 165.7138145 2.219358714 -0.017475 185 36 3574 Tyr2 TyrGTA_ii 3_flank no 289 31.326744 311.645873 171.4863085 2.234229452 -0.08646 185 37 19214 YPL081W intron no 601 441 460 33.625731 307.713152 170.6694415 2.232155767 -0.018379 185 38 1155 His1 HisGTG 5_flank/tRNA no 272 33.67175 285.155523 159.4136365 2.202525469 0.152475 185 39 14154 MT_COB intronic no 7308 6496 6524 31.445639 331.175645 181.310642 2.258423296 -0.227729 185 40 437 Asp1 AspGTC_i tRNA yes 271 6 23 33.773753 297.423853 165.598803 2.219057193 0.067489 185 41 7665 snoRNA cluster1 snR78 yes 1574 121 141 31.486737 296.048092 163.7674145 2.214227493 0.013395 185 42 5079 snR11 5_flank/snR11 no 458 31.435365 318.769243 175.102304 2.243291861 -0.133506 185 43 2487 Pro1 ProAGG 5_flank no 272 33.616178 274.997069 154.3066235 2.188384568 0.217538 185 44 5080 snR11 snR11 yes 458 1 22 33.487704 314.121819 173.8047615 2.24006167 -0.071023 185 45 9171 snR7 U5 RNA U5 yes 415 126 143 44.682134 312.869341 178.7757375 2.252308578 -0.008652 185 46 16699 YGL031C intron no 556 121 140 35.473891 341.690079 188.581985 2.275500203 -0.28097 185 47 14865 MT_Ser2; Arg2 tRNAArg2/3_flank no 360 241 263 30.838354 311.446134 171.142244 2.233357222 -0.101688 185 48 18739 YNL162W intron no 612 101 122 32.903408 307.419063 170.1612355 2.23086063 -0.025007 185 49 5415 snR31 snR31 yes 425 141 157 113.432556 431.433097 272.4328265 2.435259436 -0.320298 185 50 9331 RUF1 RUF1 yes 750 231 247 34.599957 308.484233 171.542095 2.23437071 -0.012738 185 51 13924 MT_COB bi3 no 7308 3046 3065 34.270253 312.130094 173.2001735 2.238548323 -0.045739 185 52 7972 snoRNA cluster 2 5_flank/snR57 no 739 96 115 31.782429 313.767862 172.7751455 2.237481267 -0.089878 185 53 14033 MT_COB bi4 no 7308 4681 4702 31.502911 324.262089 177.8825 2.250133224 -0.174839 185 54 20247 YDR381C-A spliced yes 40 1 20 31.283771 288.913108 160.0984395 2.204387099 0.051559 185 55 4725 snR4 snR4 yes 386 161 180 33.255234 302.411717 167.8334755 2.224878588 0.019982 185 56 20790 YKL081W spliced yes 40 21 37 35.298052 280.794674 158.046363 2.198784506 0.227954 185 57 20292 YDR500C spliced yes 40 9 25 110.039861 391.366922 250.7033915 2.399160209 -0.132307 185 58 11864 "rRNA(18S,5.8S,25S)" 25S yes 7956 6206 6221 31.104636 363.435707 197.2701715 2.295061422 -0.465361 185 59 11540 "rRNA(18S,5.8S,25S)" 25S yes 7956 4586 4599 16329.83323 11785.90383 14057.86853 4.147919478 -0.07499 185 60 19656 SIR1 2.2 SIR1 2.2 yes 401 241 262 37.584464 314.73347 176.158967 2.245904755 -0.046081 185 61 15210 MT_COX3 cox3 no 1010 571 585 33.414347 288.882651 161.148499 2.207226265 0.120553 185 62 1184 His1 HisGTG 3_flank no 272 33.518754 287.786136 160.652445 2.20588734 0.130813 185 63 2531 Pro1 ProAGG 3_flank no 272 40.095975 290.367452 165.2317135 2.218093407 0.18497 185 64 13640 MT_ATP6 ATP6 yes 980 406 428 31.676501 309.128476 170.4024885 2.231475933 -0.059933 185 65 15472 YBL091C 5_exon no 188 1 18 34.015068 303.90089 168.957979 2.227778706 0.017196 185 66 10673 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 251 269 34.187094 291.113039 162.6500665 2.211254245 0.125527 185 67 17966 YLR185W intron no 459 301 318 32.126397 298.627144 165.3767705 2.218474507 0.018426 185 68 7011 snR60 3_flank no 304 32.163675 328.514739 180.339207 2.256090156 -0.198444 185 69 13902 MT_COB exon3 yes 7308 2716 2735 31.019341 313.108535 172.063938 2.235689858 -0.105378 185 70 5313 snR30 snR30 yes 801 416 433 31.968145 297.21702 164.5925825 2.216410259 0.021984 185 71 7825 snoRNA cluster1 intergenic no 1574 921 943 29.62017 305.58218 167.601175 2.224277059 -0.108777 185 72 5381 snR31 5_flank no 425 33.718368 301.946558 167.832463 2.224875968 0.029513 185 73 9247 snR6 / U6 RNA U6/3_flank no 312 34.626184 307.090626 170.858405 2.232636348 -0.001235 185 74 11061 "rRNA(18S,5.8S,25S)" 18S yes 7956 2191 2209 32.435968 298.783912 165.60994 2.2190864 0.027474 185 75 11239 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3081 3097 3980.45839 5049.637171 4515.047781 3.654662351 -0.384175 185 76 18907 YOL120C intron no 547 341 358 31.617111 303.0944 167.3557555 2.223640653 -0.025599 185 77 19595 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 201 219 29.730064 301.179195 165.4546295 2.218678923 -0.078189 185 78 17522 YJL136C intron no 560 401 418 34.408284 291.686772 163.047528 2.212314219 0.123332 185 79 777 Glu1 GluCTC 5_flank no 272 32.570034 292.214291 162.3921625 2.210565065 0.072716 185 80 2992 Ser2 SerAGA_ii 5_flank no 282 32.903634 279.410399 156.1570165 2.193561503 0.165852 185 81 15284 MT_9S 9S yes 701 436 448 39.964361 308.055202 174.0097815 2.240573662 0.019451 185 82 362 Arg5 ArgTCT 3_flank no 272 34.587351 317.601322 176.0943365 2.245745389 -0.084869 185 83 17343 YIL018W intron no 500 261 280 31.373982 303.420549 167.3972655 2.223748359 -0.03564 185 84 12097 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7371 7391 31.512744 301.54204 166.527392 2.221485681 -0.019597 185 85 10766 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 716 734 33.90174 296.54941 165.225575 2.218077272 0.076332 185 86 2413 Phe4 PheGAA_iv 3_flank no 291 37.40967 281.159044 159.284357 2.202173127 0.248807 185 87 10361 RUF7 RUF7 yes 700 416 432 52.450692 311.745569 182.0981305 2.260305487 0.037926 185 88 3368 Thr4 ThrTGT_ii 5_flank no 272 31.632217 334.352039 182.992128 2.262432408 -0.24887 185 89 21778 copy of SH14042 no 7308 31.556476 324.588965 178.0727205 2.250597394 -0.176625 185 90 19030 YOR182C 3_exon no 511 481 493 33.717216 285.586159 159.6516875 2.203173513 0.151106 185 91 9837 RUF5-1 5_flank/RUF5-1 no 975 31.264374 302.042419 166.6533965 2.221814169 -0.030913 185 92 1873 Leu9 LeuTAG_ii 3_flank no 301 33.315706 292.195961 162.7558335 2.211536564 0.096469 185 93 590 Gln1 GlnCTG 5_flank/tRNA no 272 35.316643 293.19102 164.2538315 2.215515509 0.121409 185 94 3450 Trp1 TrpCCA tRNA yes 306 49 65 35.053769 291.867237 163.460503 2.213412831 0.129499 185 95 13067 MT_COX1 intronic no 13084 5206 5225 32.585524 308.980106 170.782815 2.232444168 -0.041545 185 96 1440 Leu2 LeuCAA_ii 5_flank no 314 34.537422 306.275706 170.406564 2.23148632 0.004269 185 97 2712 Pro5 ProTGG_iv 5_flank no 303 45.180824 298.129328 171.655076 2.23465665 0.1253 185 98 6672 snR48 3_flank no 313 31.796362 293.167536 162.481949 2.21080512 0.041616 185 99 18999 YOR122C intron no 309 161 177 31.461662 310.151182 170.806422 2.232504195 -0.073121 185 100 7650 snoRNA cluster1 5_flank no 1574 46 67 33.195719 327.612855 180.404287 2.256246854 -0.178573 185 101 19457 CYC1 CYC1 yes 400 241 260 31.717804 314.123641 172.9207225 2.237847041 -0.093521 185 102 18002 YLR287C intron no 530 221 242 32.315456 295.696697 164.0060765 2.214859939 0.04271 185 103 11990 "rRNA(18S,5.8S,25S)" 25S/3_ETS no 7956 6836 6858 32.896426 282.633916 157.765171 2.198011133 0.144504 185 104 14792 MT_Lys; Arg1; Gly 5_flank no 682 61 73 49.81246 324.095889 186.9541745 2.271735167 -0.07767 186 2 919 Glu3 GluTTC_ii 3_flank no 272 31.407594 332.006657 181.7071255 2.259371958 -0.234424 186 3 1658 Leu5 LeuCAA_v 3_flank no 315 36.179567 288.135827 162.157697 2.209937568 0.174387 186 4 19247 YPL129W 5_exon no 205 21 41 29.92457 290.325401 160.1249855 2.204459103 -0.005822 186 5 1600 Leu4 LeuCAA_iv 3_flank no 314 32.589353 319.782705 176.186029 2.245971467 -0.126423 186 6 10235 RUF6 RUF6 yes 1251 1021 1038 30.368735 291.916669 161.142702 2.207210642 0.001519 186 7 15923 YDL108W 5_exon no 181 1 13 68.806737 321.167724 194.9872305 2.290006171 0.056185 186 8 19135 YPL075W intron no 851 221 235 49.132291 333.242022 191.1871565 2.281458714 -0.154083 186 9 7296 snR66 5_flank no 286 242.755013 561.484655 402.119834 2.604355495 -0.17887 186 10 5058 snR10 3_flank no 445 29.933246 284.518198 157.225722 2.196523598 0.021534 186 11 21222 YOR182C spliced yes 40 9 28 30.055198 298.283855 164.1695265 2.215292546 -0.049045 186 12 7450 snR69 3_flank no 301 51.526554 321.152806 186.33968 2.270305345 -0.044308 186 13 331 Arg5 ArgTCT 5_flank/tRNA no 272 32.476804 296.516981 164.4968925 2.216157698 0.04281 186 14 650 Gln2 GlnTTG_i tRNA yes 272 36 48 42.660385 277.296618 159.9785015 2.204061624 0.319324 186 15 8638 snR19 / U1 RNA 3_flank no 868 33.194137 289.912305 161.553221 2.208315621 0.107098 186 16 5134 snR11 3_flank no 458 31.566798 287.588593 159.5776955 2.202972189 0.069424 186 17 1454 Leu2 LeuCAA_ii tRNA-intron no 314 i3 i19 35.968517 306.58878 171.2786485 2.233703227 0.018556 186 18 2437 Phe5 PheGAA_v 5_flank no 291 42.47915 292.873947 167.6765485 2.224472326 0.166226 186 19 4928 snR9 snR9 yes 387 46 63 34.543826 292.103561 163.3236935 2.213049193 0.121431 186 20 19788 Negative Control no 60 NA #VALUE! 41.023394 296.860588 168.941991 2.227737608 0.125265 186 21 12376 5S rRNA NTS2 no 1420 836 852 64.407187 324.791616 194.5994015 2.2891415 0.000813 186 22 21272 YPL090C spliced yes 40 9 26 29.86649 288.877649 159.3720695 2.202412212 -0.002183 186 23 11558 "rRNA(18S,5.8S,25S)" 25S yes 7956 4676 4691 24810.15208 32538.48464 28674.31836 4.457493103 -1.250528 186 24 3193 Ser5 SerTGA 3_flank no 282 43.903682 332.279704 188.091693 2.274369616 -0.174512 186 25 12512 MT_ORF6 + ORF7 (hypothetical) 5_flank/MT_ORF6_7 no 664 76 102 29.227734 274.777308 152.002521 2.181850791 0.030863 186 26 9079 snR14 / U4 RNA U4 yes 360 11 27 72.559039 335.624507 204.091773 2.309825499 -0.027923 186 27 16391 YER044C intron no 188 61 77 44.840332 295.104128 169.97223 2.230377972 0.152198 186 28 14336 MT_VAR1 VAR1 yes 1467 1246 1270 27.817872 308.118537 167.9682045 2.22522708 -0.198456 186 29 18628 YNL096C intron no 445 181 198 34.735454 303.258312 168.996883 2.227878695 0.031105 186 30 10234 RUF6 RUF6 yes 1251 1016 1035 30.652802 307.658836 169.155819 2.228286942 -0.085463 186 31 18462 YMR143W intron no 644 241 257 39.941237 315.606318 177.7737775 2.249867701 -0.048266 186 32 3110 Ser4 SerGCT 5_flank no 301 31.142092 311.540853 171.3414725 2.233862495 -0.092013 186 33 5137 snR11 3_flank no 458 33.524396 306.023856 169.774126 2.229871503 -0.006024 186 34 4801 snR5 snR5 yes 404 176 188 33.553918 301.252833 167.4033755 2.223764211 0.033173 186 35 4095 SRP SRP yes 875 366 378 64.394573 302.072944 183.2337585 2.26300549 0.183788 186 36 4406 telomerase RNA telomerase yes 1501 1066 1080 70.086171 322.154581 196.120376 2.292522717 0.056342 186 37 6455 snR45 snR45 yes 372 121 140 31.24032 293.848074 162.544197 2.210971469 0.018924 186 38 12378 5S rRNA NTS2 no 1420 846 860 40.395607 297.559238 168.9774225 2.227828681 0.117289 186 39 6608 snR47 3_flank no 299 31.357258 291.863455 161.6103565 2.208469188 0.035303 186 40 15722 YBR255C intron no 194 81 95 40.561512 295.18486 167.873186 2.224981333 0.140048 186 41 4844 snR8 snR8 yes 390 1 20 31.434798 304.271699 167.8532485 2.224929751 -0.038775 186 42 15529 YBR048W intron/exon no 611 541 560 32.540487 296.98003 164.7602585 2.216852465 0.041983 186 43 1339 Ile3 IleTAT_ii tRNA-intron no 333 i39 i56 29.051043 297.027911 163.039477 2.212292774 -0.082245 186 44 5968 snR36 snR36 yes 555 296 313 31.231027 291.542665 161.386846 2.207868134 0.033116 186 45 4545 U3b (snR17b) U3b yes 662 281 295 33.407166 283.239263 158.3232145 2.199544599 0.156652 186 46 19312 YPL198W intron no 509 301 319 33.329027 298.240337 165.784682 2.219544401 0.055226 186 47 6780 snR50 snR50/3_flank no 290 40.021321 282.616168 161.3187445 2.207684833 0.260401 186 48 7104 snR63 snR63 yes 455 26 43 33.144079 286.887889 160.015984 2.204163367 0.12483 186 49 4148 SRP SRP yes 875 631 643 37.457626 304.140034 170.79883 2.232484891 0.049274 186 50 19150 YPL075W intron no 851 521 537 34.977347 311.157559 173.067453 2.238215402 -0.029571 186 51 18550 YMR230W intron no 510 381 401 30.278266 315.824174 173.05122 2.238174665 -0.146528 186 52 2925 Pro8 ProTGG_vii 3_flank no 305 32.18124 303.895567 168.0384035 2.225408547 -0.011992 186 53 13942 MT_COB bi3 no 7308 3316 3338 29.740698 294.233416 161.987057 2.209480315 -0.034857 186 54 5747 snR35 5_flank no 740 38.134448 318.668186 178.401317 2.251398056 -0.079468 186 55 3880 RNaseP Rnasep/3_flank no 569 80.02979 307.607743 193.8187665 2.287395825 0.228859 186 56 10421 RUF8 RUF8 yes 1151 31 51 31.452855 324.94789 178.2003725 2.250908608 -0.180719 186 57 7618 snR189 snR189 yes 389 161 178 31.438454 295.318744 163.378599 2.213195168 0.016334 186 58 16335 YDR471W 3_exon no 484 461 477 48.612057 351.761867 200.186962 2.301435789 -0.29725 186 59 17227 YHR077C 5_exon no 213 21 39 33.631342 296.994848 165.313095 2.218307257 0.069307 186 60 21112 YNL096C spliced yes 40 1 20 31.531598 289.964473 160.7480355 2.206145674 0.053111 186 61 14177 MT_COB intron/exon6 no 7308 6841 6862 31.581855 300.289934 165.9358945 2.219940341 -0.009648 186 62 2965 Ser1 SerAGA_i tRNA yes 283 46 59 40.269112 283.189684 161.729398 2.20878897 0.2553 186 63 11021 "rRNA(18S,5.8S,25S)" 18S yes 7956 1991 2004 49321.97617 28728.93599 39025.45608 4.591347987 -0.201353 186 64 11919 "rRNA(18S,5.8S,25S)" 25S yes 7956 6481 6501 36.2276 311.959094 174.093347 2.240782175 -0.024699 186 65 261 Arg4 ArgCCT 5_flank no 272 32.037165 302.800994 167.4190795 2.22380495 -0.010034 186 66 440 Asp1 AspGTC_i tRNA yes 271 21 33 103.112715 374.457199 238.784957 2.378006964 -0.080278 186 67 11171 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2741 2757 114.150965 453.723965 283.937465 2.453222701 -0.422345 186 68 15914 YDL083C intron no 532 361 375 43.250626 306.551499 174.9010625 2.242792448 0.042667 186 69 18620 YNL096C 5_exon no 445 21 38 34.395688 298.887417 166.6415525 2.221783303 0.062913 186 70 20461 YGL183C spliced yes 40 1 20 32.078992 300.326863 166.2029275 2.220638669 0.006434 186 71 20495 YGL251C spliced yes 40 17 37 29.747401 311.540961 170.644181 2.232091483 -0.139858 186 72 10888 "rRNA(18S,5.8S,25S)" 18S yes 7956 1326 1346 589.478746 659.541308 624.510027 2.795539416 0.525092 186 73 9035 snR17a / U3a U3a yes 690 461 476 64.03879 344.321659 204.1802245 2.310013677 -0.145598 186 74 12320 5S rRNA NTS2 no 1420 556 575 31.618168 297.385937 164.5020525 2.216171321 0.009443 186 75 9717 RUF4 RUF4 yes 988 361 377 36.016124 289.473722 162.744923 2.211507449 0.161064 186 76 3593 Val1 ValAAC_i 5_flank no 274 31.909747 287.74021 159.8249785 2.203644655 0.079737 186 77 8329 snoRNA cluster4 intergenic/snR53 no 638 431 452 40.947204 322.779669 181.8634365 2.259745393 -0.106621 186 78 5214 snR30 5_flank no 801 34.738526 309.227414 171.98297 2.235485445 -0.01703 186 79 11768 "rRNA(18S,5.8S,25S)" 25S yes 7956 5726 5744 30.655116 303.54803 167.101573 2.222980538 -0.060617 186 80 10496 RUF8 RUF8 yes 1151 406 423 35.474893 322.346231 178.910562 2.25263598 -0.118134 186 81 16703 YGL031C intron no 556 201 222 31.253341 321.00222 176.1277805 2.245827862 -0.153162 186 82 13342 MT_COX1 ai5a no 13084 9331 9350 31.491265 315.40853 173.4498975 2.239174048 -0.106577 186 83 13148 MT_COX1 intronic no 13084 6421 6436 38.589796 300.840048 169.714922 2.229720029 0.082475 186 84 9364 RUF1 RUF1 yes 750 396 413 34.121477 309.020765 171.571121 2.234444189 -0.022799 186 85 7379 snR68 snR68 yes 336 116 133 31.889094 284.02641 157.957752 2.198540944 0.10298 186 86 14878 MT_Ala 5_flank/tRNA no 276 76 102 34.234511 321.740048 177.9872795 2.250388965 -0.121111 186 87 5357 snR30 3_flank no 801 36.530414 279.369419 157.9499165 2.198519401 0.254739 186 88 20261 YDR397C spliced yes 40 13 25 43.408058 278.169232 160.788645 2.206255375 0.312132 186 89 2245 Phe1 PheGAA_i 3_flank no 292 36.316033 301.289636 168.8028345 2.227379735 0.065625 186 90 2346 Phe3 PheGAA_iii tRNA yes 291 38 52 189.59007 360.365526 274.977798 2.43929763 0.466595 186 91 13338 MT_COX1 ai5a no 13084 9271 9297 31.325748 312.272801 171.7992745 2.235021325 -0.090193 186 92 4091 SRP SRP yes 875 346 362 33.334223 286.632913 159.983568 2.204075378 0.132441 186 93 10788 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 826 847 37.531607 322.753208 180.1424075 2.255615963 -0.116513 186 94 7998 snoRNA cluster 2 intergenic no 739 226 242 34.981781 298.66249 166.8221355 2.222253676 0.07177 186 95 16650 YFR031C intron no 247 121 140 41.307378 300.235098 170.771238 2.232414727 0.094313 186 96 111 Arg1 ArgACG_i 5_flank no 273 32.209655 278.505076 155.3573655 2.191331848 0.149568 186 97 8880 LSR1 / U2 RNA U2 yes 1375 1041 1057 35.179617 263.501901 149.340759 2.174178354 0.343625 186 98 366 Asn1 AsnGTT 5_flank no 274 31.622968 285.289423 158.4561955 2.199909224 0.086059 186 99 11932 "rRNA(18S,5.8S,25S)" 25S yes 7956 6546 6561 37.662733 286.014331 161.838532 2.20908193 0.209286 186 100 15792 YDL029W 3_exon no 223 201 216 49.896873 324.686939 187.291906 2.272519009 -0.082064 186 101 15672 YBR191W intron no 488 81 97 34.67648 294.687989 164.6822345 2.216646751 0.101249 186 102 4461 telomerase RNA 3_flank no 1501 38.364928 365.17876 201.771844 2.304860563 -0.454428 186 103 3971 RNase MRP RNaseMRP yes 540 271 285 44.065053 259.150021 151.607537 2.180720792 0.511388 186 104 8888 LSR1 / U2 RNA U2 yes 1375 1081 1095 41.580487 317.461632 179.5210595 2.254115403 -0.058867 187 2 2125 Met1 MetCAT_i tRNA yes 273 11 25 122.680661 390.898316 256.7894885 2.409577242 -0.050523 187 3 20892 YLR287C-A spliced yes 40 5 22 35.326548 304.790668 170.058608 2.23059862 0.025636 187 4 16832 YGL178W intron no 740 421 442 29.054126 307.380294 168.21721 2.225870426 -0.139728 187 5 5053 snR10 3_flank no 445 28.795191 302.967551 165.881371 2.219797616 -0.122452 187 6 21026 YMR116C spliced yes 40 1 18 31.458291 313.001406 172.2298485 2.23610842 -0.090075 187 7 9681 RUF4 RUF4 yes 988 181 201 30.264344 272.320057 151.2922005 2.17981654 0.096977 187 8 20056 YBR220C spliced yes 40 17 39 35.870407 279.427254 157.6488305 2.197690753 0.246679 187 9 6403 snR43 3_flank no 409 43.487041 346.898362 195.1927015 2.290463575 -0.290509 187 10 14907 MT_Tyr 5_flank no 284 1 23 28.193929 295.540692 161.8673105 2.209159151 -0.122093 187 11 16537 YER131W intron no 461 361 380 30.246605 289.07239 159.6594975 2.203194758 0.015338 187 12 15912 YDL083C intron no 532 321 337 32.400391 272.375041 152.387716 2.18294996 0.196711 187 13 14558 MT_21S 21S_rRNA3 yes 4639 2581 2593 2723.818801 5162.701066 3943.259934 3.595855406 -0.885244 187 14 19519 ACT1 ACT1 yes 401 281 302 29.080024 297.358175 163.2190995 2.212770977 -0.082176 187 15 19337 YPL241C intron no 180 61 78 29.397594 302.558262 165.977928 2.220050339 -0.098343 187 16 13970 MT_COB bi3 no 7308 3736 3762 29.720068 298.664372 164.19222 2.215352575 -0.063102 187 17 11483 "rRNA(18S,5.8S,25S)" 25S yes 7956 4301 4314 36.147835 296.896136 166.5219855 2.22147158 0.100006 187 18 19909 YAL001C spliced yes 40 17 35 34.429201 297.172888 165.8010445 2.219587262 0.077534 187 19 2470 Phe5 PheGAA_v 3_flank no 291 34.711095 309.101731 171.906413 2.235292078 -0.016352 187 20 3668 Val2 ValAAC_ii 3_flank no 274 30.772181 316.225048 173.4986145 2.239296011 -0.131968 187 21 18109 YLR367W intron no 583 401 422 30.948323 292.582252 161.7652875 2.208885334 0.017067 187 22 14713 MT_Cys; His 5_flank no 456 16 44 31.102455 292.867796 161.9851255 2.209475137 0.020458 187 23 18675 YNL112W intron no 1102 681 701 33.37164 318.241202 175.806421 2.245034733 -0.104659 187 24 8170 snoRNA cluster 3; snR70 yes 743 361 377 37.815979 274.27577 156.0458745 2.193252291 0.314535 187 25 14048 MT_COB bi4 no 7308 4906 4922 38.055747 269.987062 154.0214045 2.187581079 0.3561 187 26 5918 snR36 snR36 yes 555 46 67 36.188709 283.280621 159.734665 2.203399175 0.216489 187 27 8818 LSR1 / U2 RNA U2 yes 1375 731 748 32.164202 314.360145 173.2621735 2.238703758 -0.089594 187 28 2808 Pro6 ProTGG_v 3_flank no 302 1389.865838 2373.108072 1881.486955 3.274501212 -0.478424 187 29 21073 YMR225C spliced yes 40 21 37 30.630173 301.980088 166.3051305 2.220905647 -0.051932 187 30 3252 Thr1 ThrAGT 3_flank no 273 30.931929 317.785736 174.3588325 2.241443952 -0.135625 187 31 6567 snR47 5_flank no 299 56.193117 297.616862 176.9049895 2.247740082 0.17844 187 32 8464 snoRNA cluster 5 3_flank no 586 486 503 31.308129 289.326995 160.317562 2.2049811 0.049736 187 33 16315 YDR471W intron no 484 61 77 35.903328 290.097931 163.0006295 2.212189282 0.154441 187 34 14805 MT_Lys; Arg1; Gly intergenic no 682 256 284 31.303404 321.425427 176.3644155 2.246410963 -0.155755 187 35 16706 YGL031C intron no 556 261 277 33.493635 267.872762 150.6831985 2.17806483 0.262052 187 36 805 Glu1 GluCTC tRNA yes 272 41 53 1747.545936 1791.215342 1769.380639 3.247821271 0.264638 187 37 4682 snR4 5_flank no 386 33.409696 299.317296 166.363496 2.221058038 0.047319 187 38 16629 YFL039C intron no 408 321 340 33.452725 291.52077 162.4867475 2.210817945 0.105014 187 39 3695 Val3 ValCAC 5_flank no 273 31.257216 282.916345 157.0867805 2.196139639 0.089291 187 40 10829 "rRNA(18S,5.8S,25S)" 18S yes 7956 1031 1049 112.082447 508.531829 310.307138 2.491791766 -0.676786 187 41 16254 YDR397C intron no 192 121 138 33.620744 280.612626 157.116685 2.196222307 0.180461 187 42 4066 SRP SRP yes 875 221 240 31.316648 298.066417 164.6915325 2.216671271 -0.00477 187 43 4862 snR8 snR8 yes 390 91 105 35.799201 278.659306 157.2292535 2.196533352 0.252657 187 44 17680 YKL006W intron no 498 101 117 42.540274 329.512456 186.026365 2.2695745 -0.157812 187 45 16451 YER074W 5_exon no 202 21 37 53.859695 351.512468 202.6860815 2.306823927 -0.263231 187 46 20581 YHR016C spliced yes 40 13 27 73.500583 298.496905 185.998744 2.269510012 0.264383 187 47 13608 MT_ATP8/AAP1 3_flank no 347 256 282 33.364155 316.047112 174.7056335 2.242306909 -0.087655 187 48 7673 snoRNA cluster1 snR78 yes 1574 161 180 35.586521 311.908091 173.747306 2.239918079 -0.028375 187 49 2322 Phe3 PheGAA_iii 5_flank no 291 35.483792 299.741812 167.612802 2.224307186 0.068755 187 50 1694 Leu6 LeuGAG tRNA yes 282 36 51 33.058463 279.533009 156.295736 2.19394713 0.169946 187 51 19693 Negative Control no 60 NA #VALUE! 35.046436 304.076314 169.561375 2.22932693 0.028138 187 52 19801 Negative Control no 60 NA #VALUE! 38.071726 291.228913 164.6503195 2.216562578 0.169107 187 53 12579 MT_15S 15S yes 1848 436 455 32.281767 296.230179 164.255973 2.215521171 0.038302 187 54 9050 snR17a / U3a 3_flank no 690 32.062249 313.973189 173.017719 2.238090582 -0.087865 187 55 15598 YBR089C intron no 214 121 137 31.912145 270.101655 151.0069 2.178996792 0.190245 187 56 5186 snR13 snR13 yes 324 86 102 38.324386 294.310704 166.317545 2.220938066 0.143155 187 57 6564 snR47 5_flank no 299 33.967428 280.56165 157.264539 2.196630806 0.191508 187 58 14642 MT_21S intronic no 4639 3841 3865 33.969341 336.246323 185.107832 2.267424794 -0.240053 187 59 18596 YNL069C intron no 549 81 97 40.473786 305.302265 172.8880255 2.237764914 0.045689 187 60 20374 YER179W spliced yes 40 9 25 31.828129 258.835735 145.331932 2.162361047 0.242882 187 61 13753 MT_COB exon1 yes 7308 481 500 36.174836 317.858142 177.016489 2.248013723 -0.077174 187 62 6045 snR37 snR37 yes 586 141 159 34.056492 316.281413 175.1689525 2.243457133 -0.080982 187 63 7658 snoRNA cluster1 5_flank/snR78 no 1574 86 103 34.138019 287.430967 160.784493 2.206244161 0.152202 187 64 5504 snR32 snR32/3_flank no 388 32.073528 288.93519 160.504359 2.205486832 0.077453 187 65 2640 Pro3 ProTGG_ii 3_flank no 303 32.192959 306.492207 169.342583 2.22876618 -0.027277 187 66 8274 snoRNA cluster4 snR67 yes 638 156 175 38.88681 314.319293 176.6030515 2.246998203 -0.039291 187 67 11887 "rRNA(18S,5.8S,25S)" 25S yes 7956 6321 6338 32.364573 284.314982 158.3397775 2.19959003 0.116565 187 68 2057 Lys4 LysTTT_ii 5_flank no 296 32.368055 310.492881 171.430468 2.234088011 -0.056387 187 69 15616 YBR181C intron no 452 101 115 34.49705 262.211654 148.354352 2.171300291 0.332203 187 70 2442 Phe5 PheGAA_v 5_flank/tRNA no 291 30.004008 320.911094 175.457551 2.244172063 -0.185449 187 71 5156 snR13 5_flank no 324 29.870437 315.129378 172.4999075 2.236788867 -0.156634 187 72 9242 snR6 / U6 RNA U6 yes 312 81 98 38.41658 289.433011 163.9247955 2.214644651 0.188127 187 73 2477 Phe5 PheGAA_v 3_flank no 291 31.838026 283.652384 157.745205 2.197956167 0.103732 187 74 7284 snR66 5_flank no 286 34.009507 297.315331 165.662419 2.219223999 0.071271 187 75 7591 snR189 snR189 yes 389 26 42 42.824428 333.153589 187.9890085 2.274132457 -0.187008 187 76 11365 "rRNA(18S,5.8S,25S)" 25S yes 7956 3711 3728 792.506249 2202.994267 1497.750258 3.175439403 -1.095587 187 77 11996 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6866 6879 797.114735 941.853585 869.48416 2.939261675 0.287436 187 78 2694 Pro4 ProTGG_iii 3_flank no 302 30.547759 305.082855 167.815307 2.224831572 -0.073567 187 79 15312 YAL003W exon/intron no 466 41 58 30.866108 313.011045 171.9385765 2.235373327 -0.109976 187 80 15396 YBL050W 5_exon no 216 21 36 37.979071 285.345244 161.6621575 2.20860837 0.218537 187 81 15275 MT_9S 9S yes 701 301 329 29.170834 340.317673 184.7442535 2.266570938 -0.326117 187 82 15825 YDL064W intron no 210 141 160 32.842292 307.138674 169.990483 2.230424608 -0.023522 187 83 17921 YLR078C 5_exon no 189 1 18 31.87815 329.623186 180.750668 2.257079911 -0.210461 187 84 13549 MT_COX1 intronic no 13084 12436 12448 38.99173 303.293857 171.1427935 2.233358617 0.060724 187 85 19191 YPL079W 3_exon no 521 501 517 32.079044 283.302249 157.6906465 2.197805934 0.113881 187 86 5699 snR34 snR34 yes 750 416 433 34.420256 303.265983 168.8431195 2.227483367 0.027268 187 87 12849 MT_COX1 ai1 no 13084 1936 1957 32.04074 309.080783 170.5607615 2.231879126 -0.049331 187 88 3968 RNase MRP RNaseMRP yes 540 256 273 34.254924 286.616383 160.4356535 2.205300888 0.160997 187 89 19865 Negative Control no 60 NA #VALUE! 35.237027 271.841143 153.539085 2.186218948 0.287962 187 90 14471 MT_21S 21S_rRNA3 yes 4639 1276 1300 33.85184 314.436472 174.144156 2.240908905 -0.069019 187 91 15772 YCR097W 3_exon no 154 121 138 33.571306 314.859769 174.2155375 2.241086885 -0.07579 187 92 7657 snoRNA cluster1 5_flank no 1574 81 98 31.003097 288.686475 159.844786 2.203698475 0.043593 187 93 3989 RNase MRP 3_flank no 540 32.924774 288.644406 160.78459 2.206244423 0.106659 187 94 14798 MT_Lys; Arg1; Gly tRNALys yes 682 151 165 34.810373 272.834283 153.822328 2.18701938 0.268527 187 95 19491 YPT1 YPT1 yes 402 121 144 32.29054 316.238943 174.2647415 2.241209526 -0.102697 187 96 689 Gln3 GlnTTG_ii 5_flank no 272 34.165261 323.094487 178.629874 2.251954092 -0.132332 187 97 13495 MT_COX1 intronic no 13084 11626 11640 36.002576 293.935367 164.9689715 2.217402267 0.123108 187 98 19462 CYC1 CYC1 yes 400 341 355 31.384493 256.353945 143.869219 2.157967886 0.233902 187 99 13236 MT_COX1 ai4 no 13084 7741 7762 31.047352 319.279081 175.1632165 2.243442911 -0.142598 187 100 11557 "rRNA(18S,5.8S,25S)" 25S yes 7956 4671 4684 16273.58807 8886.305845 12579.94696 4.09967881 0.390752 187 101 6765 snR50 snR50 yes 290 1 18 229.226174 507.125296 368.175735 2.566055162 -0.040001 187 102 7336 snR68 5_flank no 336 36.136668 296.272489 166.2045785 2.220642983 0.105075 187 103 10772 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 746 764 33.73641 305.948602 169.842506 2.230046389 -0.002806 187 104 10370 RUF7 RUF7 yes 700 461 476 43.606227 316.963156 180.2846915 2.255958851 -0.047782 188 2 7409 snR69 5_flank no 301 39.758667 313.115577 176.437122 2.246589965 -0.026546 188 3 6241 snR42 5_flank/snR42 no 551 33.351191 302.87445 168.1128205 2.225600835 0.017396 188 4 14929 MT_Asn 5_flank no 271 61 87 35.053784 297.17497 166.114377 2.220407222 0.084961 188 5 6886 snR56 snR56 yes 288 61 82 32.770803 292.66351 162.7171565 2.211433346 0.076305 188 6 19270 YPL143W intron no 625 281 302 32.498618 301.282185 166.8904015 2.222431359 0.014158 188 7 19446 CYC1 CYC1 yes 400 21 36 34.212796 291.865926 163.039361 2.212292465 0.119455 188 8 16576 YER179W intron no 192 61 81 32.140337 298.097251 165.118794 2.217796508 0.022149 188 9 9205 snR7 U5 RNA 3_flank no 415 32.103673 301.704652 166.9041625 2.222467168 -0.00119 188 10 16045 YDL191W intron no 591 361 383 34.097913 317.699289 175.898601 2.245262385 -0.091533 188 11 8910 LSR1 / U2 RNA 3_flank no 1375 34.267461 317.848959 176.05821 2.245656282 -0.090643 188 12 14010 MT_COB intronic no 7308 4336 4353 34.514096 320.059698 177.286897 2.248676639 -0.104803 188 13 16984 YGR118W 5_exon no 420 21 37 36.785611 323.004559 179.895085 2.255019298 -0.120521 188 14 10568 RUF8 RUF8 yes 1151 766 784 37.147643 316.835703 176.991673 2.247952834 -0.065749 188 15 10740 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 586 604 37.536112 315.87454 176.705326 2.24724964 -0.05631 188 16 18679 YNL112W intron no 1102 761 780 32.86493 327.854261 180.3595955 2.256139253 -0.18454 188 17 12688 MT_Trp 3_flank no 274 241 253 34.227117 298.122476 166.1747965 2.220565156 0.067212 188 18 20565 YHR010W spliced yes 40 1 17 30.424377 310.780629 170.602503 2.231985399 -0.111862 188 19 2989 Ser2 SerAGA_ii 5_flank no 282 32.763055 323.988137 178.375596 2.251335437 -0.15651 188 20 3430 Trp1 TrpCCA 5_flank no 306 30.905186 307.550765 169.2279755 2.228472159 -0.076254 188 21 17823 YKR057W intron no 422 321 342 33.20664 305.798985 169.5028125 2.229176909 -0.008151 188 22 100 Ala2 AlaTGC 3_flank no 273 31.269346 301.956529 166.6129375 2.221708721 -0.030223 188 23 10367 RUF7 RUF7 yes 700 446 462 35.705051 312.127727 173.916389 2.24034051 -0.028738 188 24 5072 snR11 5_flank no 458 35.916714 306.571434 171.244074 2.233615551 0.018099 188 25 7645 snoRNA cluster1 5_flank no 1574 21 40 36.170646 323.664937 179.9177915 2.255074111 -0.127767 188 26 7692 snoRNA cluster1 intergenic no 1574 256 272 37.572319 302.395407 169.983863 2.230407695 0.065627 188 27 19874 Negative Control no 60 NA #VALUE! 36.847136 289.027426 162.937281 2.212020465 0.174322 188 28 5626 snR34 snR34 yes 750 51 68 32.797434 298.453491 165.6254625 2.219127104 0.041084 188 29 7509 snR71 3_flank no 290 35.394877 308.165319 171.780098 2.234972846 -0.000777 188 30 16392 YER044C intron no 188 81 101 33.447759 272.930766 153.1892625 2.185228325 0.226179 188 31 4730 snR4 snR4/3_flank no 386 31.376932 316.567666 173.972299 2.240480103 -0.117149 188 32 14647 MT_21S intronic no 4639 3916 3938 29.178174 306.431898 167.805036 2.22480499 -0.129589 188 33 14130 MT_COB intronic no 7308 6136 6162 31.436586 318.272239 174.8544125 2.242676596 -0.129634 188 34 4264 telomerase RNA telomerase yes 1501 356 373 31.334494 300.643032 165.988763 2.220078688 -0.020023 188 35 5478 snR32 snR32 yes 388 51 67 47.126955 336.893076 192.0100155 2.283323883 -0.19351 188 36 8566 snR19 / U1 RNA U1 yes 868 326 345 31.106564 307.042532 169.074548 2.228078235 -0.066426 188 37 12722 MT_COX1 5_flank no 13084 31 57 31.067326 314.88305 172.975188 2.237983811 -0.11417 188 38 17662 YKL002W 3_exon no 168 141 153 35.611557 283.131759 159.371658 2.202411091 0.211131 188 39 13367 MT_COX1 intronic no 13084 9706 9732 33.411074 318.82944 176.120257 2.245809311 -0.108734 188 40 6839 snR52 3_flank no 292 31.198993 301.544085 166.371539 2.221079034 -0.030058 188 41 13952 MT_COB bi3 no 7308 3466 3488 31.214089 308.32555 169.7698195 2.229860487 -0.070501 188 42 1287 Ile2 IleTAT_i tRNA/3_flank no 333 71 90 37.992603 301.029443 169.511023 2.229197945 0.079293 188 43 4625 snR3 snR3 yes 395 41 57 33.396571 294.409126 163.9028485 2.214586501 0.085107 188 44 9410 RUF1 3_flank no 750 31.089291 290.17952 160.6344055 2.20583857 0.036995 188 45 9986 RUF5-1 RUF5-1 yes 975 736 756 31.07768 315.558218 173.317949 2.238843541 -0.117765 188 46 5100 snR11 snR11 yes 458 101 119 33.364968 312.342271 172.8536195 2.237678478 -0.058503 188 47 5277 snR30 snR30 yes 801 236 252 33.41418 309.803856 171.609018 2.234540106 -0.037726 188 48 15877 YDL082W intron no 465 81 99 33.442969 291.323494 162.3832315 2.21054118 0.105956 188 49 12813 MT_COX1 ai1 no 13084 1396 1413 33.409869 309.951319 171.680594 2.234721207 -0.038956 188 50 16749 YGL076C intron no 559 401 418 31.036349 301.069059 166.052704 2.220245952 -0.032613 188 51 14083 MT_COB bi4 no 7308 5431 5450 37.587377 333.588241 185.587809 2.268549445 -0.208637 188 52 4017 SRP 5_flank no 875 32.851339 278.491105 155.671222 2.192208335 0.170259 188 53 322 Arg5 ArgTCT 5_flank no 272 41.46988 308.502917 174.9863985 2.243004293 0.019273 188 54 21388 Phe1_5 spliced yes 40 13 28 77.876919 329.658264 203.7675915 2.309135112 0.049517 188 55 17859 YKR095W 3_exon no 175 161 175 91.540414 319.659233 205.5998235 2.313022737 0.207008 188 56 5923 snR36 snR36 yes 555 71 88 38.737352 316.744381 177.7408665 2.249787293 -0.061117 188 57 10930 "rRNA(18S,5.8S,25S)" 18S yes 7956 1536 1549 75.121573 323.564368 199.3429705 2.299600926 0.076749 188 58 21165 YNL302C spliced yes 40 9 25 34.303137 291.476996 162.8900665 2.211894601 0.123843 188 59 156 Arg1 ArgACG_i 3_flank no 273 32.103099 321.285262 176.6941805 2.247222246 -0.144232 188 60 3181 Ser5 SerTGA tRNA yes 282 26 42 34.258273 291.872024 163.0651485 2.21236115 0.119954 188 61 21867 copy of SH19502 no 402 45.160175 282.432856 163.7965155 2.214304659 0.273592 188 62 7772 snoRNA cluster1 snR76/intergenic no 1574 656 672 45.178148 337.585165 191.3816565 2.281900309 -0.2093 188 63 19308 YPL198W intron no 509 221 240 32.129754 305.222345 168.6760495 2.227053421 -0.021684 188 64 14834 MT_Asp 5_flank no 275 31 52 30.03094 320.697818 175.364379 2.243941382 -0.183288 188 65 14311 MT_VAR1 VAR1 yes 1467 871 891 32.319555 300.037914 166.1787345 2.220575447 0.016008 188 66 582 Gln1 GlnCTG 5_flank no 272 36.818733 297.447687 167.13321 2.223062754 0.103034 188 67 10727 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 521 534 723.062738 871.819746 797.441242 2.901698693 0.29752 188 68 10165 RUF6 RUF6 yes 1251 671 683 50.16878 303.191983 176.6803815 2.247188328 0.100084 188 69 12599 MT_15S 15S yes 1848 736 750 39.020452 280.986523 160.0034875 2.204129449 0.267779 188 70 6599 snR47 3_flank no 299 49.907669 341.702046 195.8048575 2.291823462 -0.214335 188 71 6169 snR40 5_flank no 297 30.004922 306.83651 168.420716 2.226395509 -0.102843 188 72 20036 YBR186W spliced yes 40 9 24 36.441543 281.35084 158.8961915 2.201113488 0.236265 188 73 11362 "rRNA(18S,5.8S,25S)" 25S yes 7956 3696 3711 62.648584 326.482601 194.5655925 2.289066041 -0.022506 188 74 20323 YER056C-A spliced yes 40 9 26 38.604518 321.505704 180.055111 2.255405454 -0.103119 188 75 19465 ADH1 ADH1 yes 400 1 17 32.187371 285.002556 158.5949635 2.200289391 0.106384 188 76 14354 MT_ORF9; ORF10 5_flank no 578 76 97 32.386911 319.965353 176.176132 2.245947071 -0.130414 188 77 21062 YMR201C spliced yes 40 1 15 41.527043 283.821737 162.67439 2.211319187 0.251879 188 78 7929 snoRNA cluster1 snR72 yes 1574 1441 1458 35.190064 301.352535 168.2712995 2.226010049 0.052068 188 79 17215 YHR039C 3_exon no 262 241 258 42.317181 314.336402 178.3267915 2.251216596 -0.029229 188 80 14164 MT_COB intronic no 7308 6646 6665 35.864381 291.428417 163.646399 2.213906453 0.142684 188 81 455 Asp1 AspGTC_i 3_flank no 271 31.57875 272.299338 151.939044 2.181669389 0.163136 188 82 9354 RUF1 RUF1 yes 750 346 370 31.810078 327.569689 179.6898835 2.254523627 -0.195902 188 83 4133 SRP SRP yes 875 556 568 55.337343 321.044611 188.190977 2.274598797 -0.022263 188 84 203 Arg2 ArgACG_ii 3_flank no 273 34.453892 302.388267 168.4210795 2.226396447 0.034835 188 85 12032 "rRNA(18S,5.8S,25S)" 3_ETS/NTS1 no 7956 7046 7069 34.521876 280.861576 157.691726 2.197808907 0.206448 188 86 13438 MT_COX1 intronic no 13084 10771 10792 32.180053 316.931529 174.555791 2.241934261 -0.109523 188 87 4459 telomerase RNA 3_flank no 1501 32.107525 321.048412 176.5779685 2.246936516 -0.142353 188 88 16732 YGL076C intron no 559 61 80 34.289737 305.840148 170.0649425 2.230614797 0.004806 188 89 10529 RUF8 RUF8 yes 1151 571 592 34.071138 314.611764 174.341451 2.241400656 -0.067723 188 90 830 Glu2 GluTTC_i 5_flank no 272 31.501677 324.828767 178.165222 2.250822933 -0.17917 188 91 5873 snR35 3_flank no 740 33.457209 303.269825 168.363517 2.226247989 0.015486 188 92 16907 YGL232W intron no 158 61 77 37.58192 302.323147 169.9525335 2.230327643 0.066318 188 93 11936 "rRNA(18S,5.8S,25S)" 25S yes 7956 6566 6583 43.833973 297.618578 170.7262755 2.232300366 0.125693 188 94 5150 snR13 5_flank no 324 30.166941 320.243762 175.2053515 2.243547367 -0.175961 188 95 5254 snR30 snR30 yes 801 121 133 42.908233 276.432283 159.670258 2.203224027 0.328576 188 96 10615 RUF8 3_flank no 1151 33.863156 271.08492 152.474038 2.183195902 0.251562 188 97 5656 snR34 snR34 yes 750 201 222 31.406667 309.437574 170.4221205 2.231525965 -0.070707 188 98 20690 YIL133C spliced yes 40 17 33 126.745427 340.201498 233.4734625 2.368237524 0.272808 188 99 18189 YML024W intron no 498 81 98 32.863339 309.870272 171.3668055 2.233926701 -0.045139 188 100 13361 MT_COX1 intronic no 13084 9616 9640 33.551922 347.244398 190.39816 2.279662747 -0.331109 188 101 9108 snR14 / U4 RNA U4/3_flank no 360 32.181984 280.132851 156.1574175 2.193562618 0.137941 188 102 7895 snoRNA cluster1 intergenic no 1574 1271 1288 44.154931 343.423086 193.7890085 2.287329141 -0.260186 188 103 9955 RUF5-1 RUF5-1 yes 975 581 598 31.61694 280.984724 156.300832 2.19396129 0.113853 188 104 7314 snR66 snR66 yes 286 61 80 31.39351 296.928117 164.1608135 2.215269496 0.004834 189 2 17931 YLR093C 5_exon no 241 21 42 29.452458 324.932107 177.1922825 2.248444803 -0.22775 189 3 4420 telomerase RNA telomerase yes 1501 1136 1155 29.255249 293.810602 161.5329255 2.208261059 -0.05686 189 4 12644 MT_15S 15S yes 1848 1411 1437 29.033694 300.668406 164.85105 2.217091718 -0.099813 189 5 4451 telomerase RNA telomerase/3_flank no 1501 32.731572 313.361885 173.0467285 2.238163393 -0.074494 189 6 17584 YJL191W intron no 508 201 218 32.487726 309.252761 170.8702435 2.232666438 -0.044969 189 7 102 Ala2 AlaTGC 3_flank no 273 36.171492 295.37577 165.773631 2.21951545 0.112965 189 8 7054 snR62 snR62 yes 300 61 80 30.261961 323.228512 176.7452365 2.247347718 -0.189758 189 9 20175 YDL189W spliced yes 40 1 13 79.626377 330.392775 205.009576 2.311774147 0.054988 189 10 16468 YER102W 5_exon no 460 1 21 33.226573 290.764765 161.995669 2.209503404 0.102712 189 11 19893 snR17A spliced yes 40 1 16 34.369532 291.106939 162.7382355 2.211489603 0.127783 189 12 11975 "rRNA(18S,5.8S,25S)" 25S yes 7956 6761 6778 6398.014275 19861.26377 13129.63902 4.118252786 -2.087664 189 13 13139 MT_COX1 intronic no 13084 6286 6304 40.82802 313.566042 177.197031 2.248456441 -0.0276 189 14 17935 YLR093C intron no 241 101 115 33.239353 270.852156 152.0457545 2.181974298 0.233728 189 15 17876 YLR048W exon/intron no 459 41 58 31.564919 283.892093 157.728506 2.19791019 0.093181 189 16 8138 snoRNA cluster 3; intergenic no 743 201 215 44.089143 321.202093 182.645618 2.261609257 -0.082653 189 17 7355 snR68 5_flank/snR68 no 336 32.222249 299.56036 165.8913045 2.219823622 0.015792 189 18 3760 Val4 ValTAC tRNA yes 274 25 39 32.538909 270.684259 151.611584 2.180732385 0.21263 189 19 6246 snR42 snR42 yes 551 11 26 81.146801 366.693044 223.9199225 2.350092735 -0.18002 189 20 18716 YNL130C intron no 541 401 420 30.982519 272.690993 151.836756 2.181376916 0.131605 189 21 17620 YJR094W 5_exon no 375 1 23 31.189612 315.005809 173.0977105 2.238291324 -0.110785 189 22 12049 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7131 7148 35.632831 314.020885 174.826858 2.242608152 -0.044616 189 23 19476 ADH1 ADH1 yes 400 221 237 33.697336 286.230086 159.963711 2.204021471 0.146343 189 24 9893 RUF5-1 RUF5-1 yes 975 271 287 33.912418 312.158147 173.0352825 2.238134666 -0.050307 189 25 10512 RUF8 RUF8 yes 1151 486 508 32.000495 315.822047 173.911271 2.240327729 -0.103173 189 26 13604 MT_ATP8/AAP1 MT_AAP1 yes 347 196 215 32.295123 313.433881 172.864502 2.237705819 -0.08062 189 27 21688 copy of SH10243 no 1251 30.427894 284.304663 157.3662785 2.196911674 0.048 189 28 1482 Leu2 LeuCAA_ii 3_flank no 314 39.73185 334.062115 186.8969825 2.27160229 -0.205153 189 29 5827 snR35 snR35 yes 740 321 335 33.363221 303.117171 168.240196 2.225929766 0.015566 189 30 13873 MT_COB intronic no 7308 2281 2309 30.233804 315.863275 173.0485395 2.238167938 -0.148291 189 31 7164 snR63 3_flank no 455 38.422349 304.052153 171.237251 2.233598247 0.052404 189 32 86 Ala2 AlaTGC tRNA/3_flank no 273 31.584673 304.97556 168.2801165 2.226032804 -0.038062 189 33 12729 MT_COX1 exon1 yes 13084 136 157 29.228117 305.356403 167.29226 2.223475848 -0.12133 189 34 17797 YKL186C 3_exon no 249 201 216 42.789929 302.768436 172.7791825 2.237491415 0.075203 189 35 8173 snoRNA cluster 3; snR70 yes 743 376 396 31.20539 306.367431 168.7864105 2.227337477 -0.059062 189 36 9829 RUF5-1 5_flank no 975 31.075541 296.437703 163.756622 2.214198871 -0.002753 189 37 5237 snR30 snR30 yes 801 36 50 58.19635 336.175751 197.1860505 2.294876188 -0.122794 189 38 16668 YFR032C intron no 431 241 256 33.264487 296.639944 164.9522155 2.217358153 0.067071 189 39 20728 YJL177W spliced yes 40 21 36 33.30011 311.667215 172.4836625 2.236747965 -0.053962 189 40 14118 MT_COB intronic no 7308 5956 5977 31.071606 290.897349 160.9844775 2.206784002 0.031852 189 41 2755 Pro5 ProTGG_iv 3_flank no 303 35.586108 327.117974 181.352041 2.258522448 -0.158906 189 42 9590 RUF3 RUF3 yes 631 336 355 31.029179 303.1178 167.0734895 2.222907543 -0.045341 189 43 13223 MT_COX1 ai4 no 13084 7546 7563 30.97997 291.214009 161.0969895 2.207087425 0.026764 189 44 9806 RUF4 3_flank no 988 42.224591 288.728844 165.4767175 2.218736897 0.205505 189 45 17378 YIL052C intron no 572 461 480 37.734109 334.930526 186.3323175 2.270288186 -0.219501 189 46 17048 YGR214W intron no 555 101 117 37.821368 308.551296 173.186332 2.238513614 0.009922 189 47 15702 YBR220C intron no 521 201 217 37.941995 296.941237 167.441616 2.223863407 0.117377 189 48 7976 snoRNA cluster 2 snR57 yes 739 116 137 31.22769 310.106814 170.667252 2.232150196 -0.080652 189 49 4477 U3b (snR17b) 5_flank no 662 35.795897 280.286603 158.04125 2.198770456 0.238229 189 50 9852 RUF5-1 RUF5-1 yes 975 66 83 33.454123 310.397999 171.926061 2.235341713 -0.041967 189 51 19975 YBL087C spliced yes 40 9 27 33.296773 297.180365 165.238569 2.218111425 0.063624 189 52 2883 Pro8 ProTGG_vii 5_flank no 305 35.327389 340.510302 187.9188455 2.273970336 -0.271683 189 53 13663 MT_ATP6 ATP6 yes 980 751 768 32.859115 286.305165 159.58214 2.202984285 0.119557 189 54 4973 snR9 3_flank no 387 46.0065 297.621778 171.814139 2.2350589 0.132553 189 55 11209 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2931 2949 39.167741 300.938618 170.0531795 2.230584756 0.082917 189 56 4318 telomerase RNA telomerase yes 1501 626 638 32.456167 260.489803 146.472985 2.165757532 0.26476 189 57 20771 YKL002W spliced yes 40 17 36 34.611148 327.011608 180.811378 2.257225756 -0.160534 189 58 9012 snR17a / U3a U3a yes 690 346 362 36.770968 291.354383 164.0626755 2.21500979 0.153648 189 59 16049 YDL191W intron no 591 441 457 32.328449 318.253861 175.291155 2.243760003 -0.117907 189 60 11951 "rRNA(18S,5.8S,25S)" 25S yes 7956 6641 6654 34.466829 275.873287 155.170058 2.190807922 0.237775 189 61 9888 RUF5-1 RUF5-1 yes 975 246 264 32.23342 291.842946 162.038183 2.209617365 0.064209 189 62 13916 MT_COB bi3 no 7308 2926 2948 30.036074 324.128236 177.082155 2.248174798 -0.2027 189 63 14884 MT_Ala tRNA/3_flank no 276 166 188 32.25077 313.624299 172.9375345 2.237889263 -0.08269 189 64 1823 Leu8 LeuTAG_i 3_flank no 301 32.325412 282.030476 157.177944 2.196391604 0.130154 189 65 8765 LSR1 / U2 RNA U2 yes 1375 466 483 47.879539 344.398376 196.1389575 2.292563863 -0.246992 189 66 978 Gly1 GlyCCC_i 3_flank no 272 32.526039 286.657406 159.5917225 2.203010362 0.106654 189 67 19289 YPL175W exon/intron no 200 41 58 30.381786 310.510161 170.4459735 2.231586746 -0.111722 189 68 9501 RUF2 3_flank no 468 32.600803 311.637878 172.1193405 2.235829673 -0.062517 189 69 7964 snoRNA cluster 2 5_flank no 739 56 71 39.185153 300.089601 169.637377 2.229521549 0.090852 189 70 6054 snR37 snR37 yes 586 186 202 41.282424 302.852317 172.0673705 2.235698522 0.070007 189 71 16819 YGL178W intron no 740 161 176 45.558208 291.32705 168.442629 2.226452011 0.189795 189 72 6580 snR47 snR47 yes 299 6 26 30.084885 289.28822 159.6865525 2.203268345 0.007246 189 73 5644 snR34 snR34 yes 750 141 162 30.057886 297.168573 163.6132295 2.213818417 -0.042055 189 74 9199 snR7 U5 RNA 3_flank no 415 30.097559 297.990601 164.04408 2.214960562 -0.045764 189 75 10987 "rRNA(18S,5.8S,25S)" 18S yes 7956 1821 1838 860.016797 3179.367925 2019.692361 3.305285223 -1.568358 189 76 597 Gln1 GlnCTG tRNA yes 272 26 41 34.804738 282.748281 158.7765095 2.20078625 0.202642 189 77 20455 YGL178W spliced yes 40 1 20 32.834891 299.27273 166.0538105 2.220248846 0.037229 189 78 14757 MT_ORF11; Leu; Gln ORF11 yes 716 241 253 36.482941 301.004306 168.7436235 2.227227371 0.069866 189 79 13533 MT_COX1 intronic no 13084 12196 12213 34.5363 306.858234 170.697267 2.232226568 -0.00044 189 80 11329 "rRNA(18S,5.8S,25S)" 25S yes 7956 3531 3544 7882.31396 6294.120664 7088.217312 3.850537024 0.081496 189 81 11580 "rRNA(18S,5.8S,25S)" 25S yes 7956 4786 4802 47.811024 292.40299 170.107007 2.230722203 0.186557 189 82 7833 snoRNA cluster1 snR74 yes 1574 961 978 50.465102 315.951041 183.2080715 2.262944603 -0.007285 189 83 9113 snR14 / U4 RNA 3_flank no 360 34.371338 309.7532 172.062269 2.235685646 -0.025628 189 84 13270 MT_COX1 intronic no 13084 8251 8277 32.1592 304.413069 168.2861345 2.226048335 -0.01584 189 85 11259 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3181 3194 170.516237 412.408887 291.462562 2.464582778 0.101844 189 86 14127 MT_COB exon5 yes 7308 6091 6108 33.359833 272.491337 152.925585 2.184480151 0.226397 189 87 4670 snR3 3_flank no 395 32.095982 290.326242 161.211112 2.207394974 0.069341 189 88 12048 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7126 7139 41.215164 276.308026 158.761595 2.200745453 0.326157 189 89 7792 snoRNA cluster1 snR75 yes 1574 756 772 31.683927 309.062621 170.373274 2.231401469 -0.059296 189 90 3788 RNaseP 5_flank no 569 33.657736 305.546429 169.6020825 2.229431181 -0.000522 189 91 8547 snR19 / U1 RNA U1 yes 868 231 247 40.052407 320.391929 180.222168 2.25580821 -0.089402 189 92 17022 YGR148C intron no 479 361 378 32.867821 319.245941 176.056881 2.245653004 -0.118748 189 93 19380 YPR043W intron no 503 181 199 30.257313 310.123454 170.1903835 2.230935017 -0.113714 189 94 4106 SRP SRP yes 875 421 433 36.418036 283.358723 159.8883795 2.203816901 0.218424 189 95 11245 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3111 3129 160.965204 434.853921 297.9095625 2.474084444 -0.055008 189 96 12911 MT_COX1 ai2 no 13084 2866 2886 33.518235 309.529326 171.5237805 2.23432434 -0.034248 189 97 11250 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3136 3154 39.53888 291.16441 165.351645 2.21840852 0.176034 189 98 13451 MT_COX1 intronic no 13084 10966 10990 30.783814 297.546467 164.1651405 2.215280943 -0.019476 189 99 14181 MT_COB exon6 yes 7308 6901 6921 30.483916 299.208659 164.8462875 2.217079171 -0.039955 189 100 11920 "rRNA(18S,5.8S,25S)" 25S yes 7956 6486 6504 38.42331 326.234117 182.3287135 2.260855068 -0.144342 189 101 2131 Met1 MetCAT_i tRNA yes 273 41 56 3058.129114 1422.961412 2240.545263 3.350353722 1.359437 189 102 61 Ala2 AlaTGC 5_flank no 273 31.726968 288.753675 160.2403215 2.204771808 0.067265 189 103 13298 MT_COX1 ai5a no 13084 8671 8692 31.537113 307.508175 169.522644 2.229227717 -0.054863 189 104 7496 snR71 3_flank no 290 31.391053 278.346471 154.868762 2.189963827 0.123735 190 2 753 Gln4 GlnTTG_iii tRNA yes 272 36 50 86.372634 349.25354 217.813087 2.33808397 -0.032031 190 3 19775 Negative Control no 60 NA #VALUE! 34.078659 284.71241 159.3955345 2.20247615 0.167882 190 4 19481 ADH1 ADH1 yes 400 321 336 52.725799 306.333505 179.529652 2.254136189 0.085082 190 5 19436 YPR132W 3_exon no 465 441 458 34.568668 318.95312 176.760894 2.247386189 -0.095589 190 6 10620 RUF8 3_flank no 1151 38.244423 295.964293 167.104358 2.222987776 0.12731 190 7 2082 Lys4 LysTTT_ii tRNA yes 296 53 65 38.061949 289.968833 164.015391 2.214884604 0.179716 190 8 4508 U3b (snR17b) U3b yes 662 96 113 53.488412 308.676776 181.082594 2.257876707 0.069348 190 9 17419 YIL111W exon/intron no 188 41 60 30.270426 293.802527 162.0364765 2.209612791 -0.013723 190 10 14175 MT_COB intronic no 7308 6811 6833 28.435589 310.564258 169.4999235 2.229169507 -0.181172 190 11 18450 YMR143W 5_exon no 644 1 20 51.989199 350.395725 201.192462 2.303611705 -0.267246 190 12 9492 RUF2 3_flank no 468 30.735104 293.295535 162.0153195 2.209556082 0.005365 190 13 20660 YIL052C spliced yes 40 1 18 36.894984 323.524481 180.2097325 2.255778242 -0.124744 190 14 19787 Negative Control no 60 NA #VALUE! 35.225399 294.203489 164.714444 2.216731685 0.111819 190 15 15757 YCR031C intron no 407 221 238 29.541556 323.47644 176.508998 2.24676685 -0.216329 190 16 3696 Val3 ValCAC 5_flank no 273 33.89168 327.382912 180.637296 2.256807424 -0.168247 190 17 15503 YBR048W 5_exon no 611 21 38 32.196795 300.665987 166.431391 2.221235243 0.008184 190 18 13870 MT_COB intronic no 7308 2236 2257 28.394327 298.513909 163.454118 2.213395867 -0.124418 190 19 9017 snR17a / U3a U3a yes 690 371 388 34.915253 324.106506 179.5108795 2.254090775 -0.134802 190 20 3561 Tyr2 TyrGTA_ii tRNA yes 289 60 72 71.221035 364.867358 218.0441965 2.338544532 -0.237379 190 21 13947 MT_COB bi3 no 7308 3391 3415 31.210602 290.265301 160.7379515 2.206118429 0.040517 190 22 10765 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 711 728 52.780096 336.479925 194.6300105 2.289209806 -0.157862 190 23 8115 snoRNA cluster 3; 5_flank no 743 86 103 33.728039 295.587552 164.6577955 2.216582297 0.082234 190 24 2549 Pro2 ProTGG_i 5_flank no 303 31.792752 313.597795 172.6952735 2.237280452 -0.088403 190 25 6172 snR40 5_flank no 297 34.218057 324.798069 179.508063 2.254083961 -0.144689 190 26 8589 snR19 / U1 RNA U1 yes 868 441 458 32.356548 300.825768 166.591158 2.221651947 0.012374 190 27 3688 Val3 ValCAC 5_flank no 273 30.505422 300.128222 165.316822 2.218317048 -0.044869 190 28 6836 snR52 snR52/3_flank no 292 33.113813 322.866797 177.990305 2.250396347 -0.143532 190 29 11383 "rRNA(18S,5.8S,25S)" 25S yes 7956 3801 3819 23842.04763 14091.12452 18966.58607 4.277989166 0.090628 190 30 11363 "rRNA(18S,5.8S,25S)" 25S yes 7956 3701 3716 36.067222 293.34728 164.707251 2.216712719 0.1288 190 31 15793 YDL061C 5_exon no 509 1 19 33.946918 310.718264 172.332591 2.236367418 -0.038461 190 32 14151 MT_COB intronic no 7308 6451 6467 33.975067 289.989028 161.9820475 2.209466884 0.130893 190 33 6381 snR43 snR43 yes 409 146 165 31.581197 297.341645 164.461421 2.216064038 0.008496 190 34 3484 Tyr1 TyrGTA_i 5_flank no 289 33.695785 304.096722 168.8962535 2.227620016 0.011699 190 35 20701 YJL001W spliced yes 40 13 28 35.769574 299.367024 167.568299 2.224191861 0.075168 190 36 21633 copy of SH7933 no 1574 35.599669 290.756609 163.178139 2.212661976 0.14532 190 37 20204 YDR025W spliced yes 40 21 37 63.861945 298.621531 181.241738 2.258258218 0.20988 190 38 4908 snR9 5_flank no 387 30.969496 300.274081 165.6217885 2.21911747 -0.029997 190 39 11668 "rRNA(18S,5.8S,25S)" 25S yes 7956 5226 5239 42.255013 296.511815 169.383414 2.228870882 0.131251 190 40 6273 snR42 snR42 yes 551 146 165 33.22066 306.360024 169.790342 2.229912983 -0.012506 190 41 7766 snoRNA cluster1 snR76 yes 1574 626 640 39.947428 290.67375 165.310589 2.218300673 0.181685 190 42 9601 RUF3 RUF3 yes 631 391 407 63.630562 353.501852 208.566207 2.319243943 -0.213169 190 43 13108 MT_COX1 ai3 no 13084 5821 5837 33.064105 306.469103 169.766604 2.229852261 -0.015342 190 44 4628 snR3 snR3 yes 395 56 73 33.044111 284.585827 158.814969 2.200891434 0.136509 190 45 4110 SRP SRP yes 875 441 453 48.849599 313.707917 181.278758 2.258346917 0.003533 190 46 6859 snR56 5_flank no 288 35.457263 313.190021 174.323642 2.241356291 -0.040018 190 47 16415 YER056C intron no 497 361 377 35.62046 279.70967 157.665065 2.197735474 0.241287 190 48 14930 MT_Asn 5_flank/tRNA no 271 76 101 31.228144 329.497653 180.3628985 2.256147206 -0.21805 190 49 6642 snR48 snR48 yes 313 36 52 33.572354 285.264313 159.4183335 2.202538265 0.148686 190 50 14607 MT_21S Sce1 no 4639 3316 3335 33.547547 307.986212 170.7668795 2.232403642 -0.021535 190 51 7786 snoRNA cluster1 intergenic/snR75 no 1574 726 745 33.424739 314.600663 174.012701 2.240580948 -0.075567 190 52 20055 YBR220C spliced yes 40 13 32 34.364409 309.775554 172.0699815 2.235705112 -0.02589 190 53 4194 telomerase RNA telomerase yes 1501 6 23 69.135896 355.252727 212.1943115 2.326733737 -0.187778 190 54 21567 copy of SH5227 no 801 39.554862 337.50332 188.529091 2.275378374 -0.2339 190 55 5661 snR34 snR34 yes 750 226 240 32.731935 296.470973 164.601454 2.216433667 0.051267 190 56 11850 "rRNA(18S,5.8S,25S)" 25S yes 7956 6136 6152 102.457661 356.142934 229.3002975 2.360404618 0.02799 190 57 7528 snR79 5_flank no 284 32.601433 301.331234 166.9663335 2.22262891 0.017157 190 58 10330 RUF7 RUF7 yes 700 261 278 30.343536 286.387955 158.3657455 2.19966125 0.033965 190 59 3656 Val2 ValAAC_ii tRNA yes 274 20:A 36 32.485999 294.304178 163.3950885 2.213238998 0.056897 190 60 9582 RUF3 RUF3 yes 631 296 315 32.413517 294.10541 163.2594635 2.212878365 0.055809 190 61 6521 snR46 snR46 yes 397 96 112 127.440271 389.31256 258.3764155 2.412252869 -0.013747 190 62 13987 MT_COB intronic no 7308 3991 4003 47.718249 310.881167 179.299708 2.253579582 0.021672 190 63 13461 MT_COX1 intronic no 13084 11116 11137 32.343436 308.71322 170.528328 2.231796534 -0.042497 190 64 17214 YHR039C 3_exon no 262 221 236 43.4385 284.925656 164.182078 2.215325748 0.245142 190 65 3350 Thr3 ThrTGT_i 3_flank no 272 48.024015 326.141269 187.082642 2.272033494 -0.103258 190 66 8195 snoRNA cluster 3; intergenic no 743 486 505 32.641495 315.239748 173.9406215 2.240401018 -0.0904 190 67 16791 YGL103W intron no 611 501 519 32.725041 299.140713 165.932877 2.219932443 0.034542 190 68 8612 snR19 / U1 RNA U1 yes 868 556 572 37.199967 322.955408 180.0776875 2.255459905 -0.119074 190 69 21446 copy of SH84 no 273 37.160639 279.415173 158.287906 2.199447734 0.261417 190 70 11521 "rRNA(18S,5.8S,25S)" 25S yes 7956 4491 4511 157.966752 608.791122 383.378937 2.583628249 -0.742952 190 71 14420 MT_21S 21S_rRNA3 yes 4639 511 532 28.13587 307.747989 167.9419295 2.225159139 -0.179193 190 72 6807 snR52 5_flank no 292 31.371575 320.937346 176.1544605 2.245893645 -0.151099 190 73 21174 YNL312W spliced yes 40 21 38 36.856629 273.674504 155.2655665 2.191075152 0.309319 190 74 19190 YPL079W 3_exon no 521 481 495 34.700974 293.418201 164.0595875 2.215001615 0.112213 190 75 15744 YCR028C 3_exon no 183 141 158 32.610116 320.842105 176.7261105 2.247300719 -0.134333 190 76 20391 YFL039C spliced yes 40 5 22 30.56259 302.28803 166.42531 2.221219375 -0.056116 190 77 21280 YPL129W spliced yes 40 17 34 38.609817 295.106443 166.85813 2.222347372 0.136288 190 78 21634 copy of SH8139 no 743 62.752365 322.405436 192.5789005 2.284608703 0.009859 190 79 16988 YGR118W intron no 420 101 118 34.655113 304.603246 169.6291795 2.229500561 0.01921 190 80 8225 snoRNA cluster 3; snR51/3_flank no 743 636 654 33.774623 296.352538 165.0635805 2.217651261 0.076418 190 81 3523 Tyr1 TyrGTA_i 3_flank no 289 31.705268 286.622149 159.1637085 2.20184405 0.080192 190 82 114 Arg1 ArgACG_i 5_flank no 273 31.892744 298.603258 165.248001 2.218136215 0.010951 190 83 19631 RNA14 2.2 RNA14 2.2 yes 401 121 140 32.037898 304.165498 168.101698 2.2255721 -0.018288 190 84 18842 YNL312W 5_exon no 208 21 38 32.130967 319.822627 175.976797 2.245455409 -0.132597 190 85 5836 snR35 snR35 yes 740 366 382 34.498529 285.082219 159.790374 2.203550613 0.178279 190 86 20454 YGL137W spliced yes 40 17 38 32.122747 315.081944 173.6023455 2.239555589 -0.095796 190 87 10340 RUF7 RUF7 yes 700 311 328 32.006666 306.406553 169.2066095 2.228417323 -0.032822 190 88 8244 snoRNA cluster4 5_flank no 638 6 27 36.435326 300.936096 168.685711 2.227078296 0.069885 190 89 16245 YDR381W intron/exon no 866 801 825 40.718866 329.350537 185.0347015 2.267253184 -0.162696 190 90 16521 YER131W exon/intron no 461 41 60 33.470137 328.628437 181.049287 2.257796819 -0.182813 190 91 17868 YLL050C intron no 279 161 179 33.053703 349.748282 191.4009925 2.281944185 -0.352551 190 92 13181 MT_COX1 exon4 yes 13084 6916 6930 52.580643 315.594891 184.087767 2.26502493 0.006892 190 93 6151 snR39B snR39B/3_flank no 296 31.077742 304.218509 167.6481255 2.224398702 -0.050382 190 94 6590 snR47 snR47 yes 299 56 75 36.066369 312.017615 174.041992 2.240654045 -0.02563 190 95 11551 "rRNA(18S,5.8S,25S)" 25S yes 7956 4641 4659 33.518628 310.550198 172.034413 2.23561533 -0.042381 190 96 10431 RUF8 RUF8 yes 1151 81 97 35.283562 269.317715 152.3006385 2.182701724 0.306511 190 97 4561 U3b (snR17b) U3b yes 662 361 378 32.857921 343.034649 187.946285 2.274033746 -0.298937 190 98 7538 snR79 snR79 yes 284 31 48 33.595626 335.073794 184.33471 2.26560712 -0.231303 190 99 7337 snR68 5_flank no 336 32.272116 279.02427 155.648193 2.192144083 0.148162 190 100 257 Arg3 ArgCCG 3_flank no 272 46.342938 288.737483 167.5402105 2.224119057 0.216718 190 101 2573 Pro2 ProTGG_i tRNA/3_flank no 303 38.89254 347.08778 192.99016 2.285535166 -0.313114 190 102 2691 Pro4 ProTGG_iii 3_flank no 302 45.811853 280.515395 163.163624 2.212623343 0.294319 190 103 4146 SRP SRP yes 875 621 633 353.191786 454.999299 404.0955425 2.60648406 0.596302 190 104 17213 YHR039C intron/exon no 262 201 218 35.452159 290.65996 163.0560595 2.212336943 0.144422 191 2 11528 "rRNA(18S,5.8S,25S)" 25S yes 7956 4526 4543 807.100507 3091.479814 1949.290161 3.289876491 -1.607319 191 3 10984 "rRNA(18S,5.8S,25S)" 18S yes 7956 1806 1826 89.980895 359.913239 224.947067 2.352080335 -0.076597 191 4 17002 YGR118W 3_exon no 420 381 398 78.842392 364.456784 221.649588 2.345666928 -0.181239 191 5 17785 YKL180W 3_exon no 406 361 377 34.390576 319.238414 176.814495 2.247517865 -0.099938 191 6 16800 YGL137W intron no 300 81 97 38.102581 272.889952 155.4962665 2.191719966 0.33018 191 7 2126 Met1 MetCAT_i tRNA yes 273 16 30 445.630635 716.772627 581.201631 2.764326824 0.054919 191 8 10157 RUF6 RUF6 yes 1251 631 653 28.301791 309.467372 168.8845815 2.227590002 -0.179582 191 9 18301 YML073C intron no 515 221 235 63.254112 314.767618 189.010865 2.27648677 0.073323 191 10 13519 MT_COX1 intronic no 13084 11986 12005 30.383306 294.331201 162.3572535 2.210471696 -0.013147 191 11 5823 snR35 snR35 yes 740 301 321 32.491934 279.347073 155.9195035 2.192900443 0.153121 191 12 3378 Thr4 ThrTGT_ii 5_flank no 272 28.79321 295.705821 162.2495155 2.210183409 -0.090157 191 13 17303 YHR203C exon/intron no 369 41 55 39.85388 312.278382 176.066131 2.245675821 -0.018847 191 14 16916 YGL251C intron no 252 81 97 31.222158 282.266334 156.744246 2.195191607 0.092354 191 15 11862 "rRNA(18S,5.8S,25S)" 25S yes 7956 6196 6213 31.501167 256.4156 143.9583835 2.158236961 0.239347 191 16 20489 YGL232W spliced yes 40 17 36 29.789036 324.329483 177.0592595 2.248118644 -0.212466 191 17 2850 Pro7 ProTGG_vi intron/tRNA no 303 i20 41 86.514478 381.335505 233.9249915 2.369076622 -0.232391 191 18 21034 YMR125W spliced yes 40 9 25 44.889519 309.38838 177.1389495 2.248314065 0.022697 191 19 18699 YNL130C intron no 541 61 77 30.701325 282.77845 156.7398875 2.195179531 0.069068 191 20 19647 SIR1 2.2 SIR1 2.2 yes 401 61 78 30.956874 295.20184 163.079357 2.21239899 0.000944 191 21 271 Arg4 ArgCCT 5_flank no 272 29.059674 276.123429 152.5915515 2.183530489 0.015395 191 22 18363 YMR079W 5_exon no 256 1 16 35.608256 300.897824 168.25304 2.22596292 0.060692 191 23 13995 MT_COB intronic no 7308 4111 4132 30.462671 293.930461 162.196566 2.210041655 -0.007914 191 24 19389 YPR043W intron no 503 361 378 33.883604 279.4543 156.668952 2.194982938 0.196209 191 25 15230 MT_COX3 cox3 no 1010 871 892 31.986989 293.997685 162.992337 2.212167187 0.042651 191 26 18038 YLR333C exon/intron no 523 41 58 30.122849 336.118066 183.1204575 2.262736865 -0.282134 191 27 11485 "rRNA(18S,5.8S,25S)" 25S yes 7956 4311 4328 104.776152 498.904456 301.840304 2.47977723 -0.689119 191 28 16822 YGL178W intron no 740 221 237 33.118848 290.748064 161.933456 2.209336585 0.099427 191 29 16109 YDR064W intron no 639 101 118 33.515202 305.241921 169.3785615 2.22885844 0.000185 191 30 6173 snR40 5_flank no 297 33.828463 318.430903 176.129683 2.245832553 -0.100502 191 31 19834 Negative Control no 60 NA #VALUE! 38.626349 284.833106 161.7297275 2.208789855 0.229974 191 32 14163 MT_COB intronic no 7308 6631 6655 31.737207 331.848112 181.7926595 2.259576343 -0.228921 191 33 5955 snR36 snR36 yes 555 231 250 31.645076 290.041653 160.8433645 2.206403149 0.056372 191 34 16991 YGR118W intron no 420 161 175 33.763431 275.822635 154.793033 2.18975141 0.216583 191 35 15888 YDL082W intron no 465 301 318 33.563068 288.0441 160.803584 2.206295724 0.130542 191 36 11400 "rRNA(18S,5.8S,25S)" 25S yes 7956 3886 3901 52.722463 328.881137 190.8018 2.280582467 -0.099056 191 37 13730 MT_COB exon1 yes 7308 136 157 31.037585 321.475313 176.256449 2.246145016 -0.15967 191 38 19115 YPL031C 5_exon no 202 21 38 33.243411 285.233229 159.23832 2.202047587 0.138605 191 39 7965 snoRNA cluster 2 5_flank no 739 61 78 30.96388 284.733168 157.848524 2.198240525 0.067659 191 40 21761 copy of SH13393 no 13084 33.173416 328.387777 180.7805965 2.257151815 -0.18469 191 41 6955 snR58 3_flank no 296 35.347365 268.178702 151.7630335 2.181165999 0.316201 191 42 20141 YDL108W spliced yes 40 13 30 92.534691 365.827084 229.1808875 2.360178397 -0.097266 191 43 1455 Leu2 LeuCAA_ii tRNA-intron no 314 i8 i22 41.881653 273.123251 157.502452 2.197287319 0.360013 191 44 13812 MT_COB bi2 no 7308 1366 1390 30.675136 308.99785 169.836493 2.230031013 -0.092698 191 45 313 Arg5 ArgTCT 5_flank no 272 32.959947 290.449228 161.7045875 2.208722341 0.096298 191 46 8055 snoRNA cluster 2 intergenic no 739 511 532 30.852058 298.921109 164.8865835 2.217185319 -0.02565 191 47 1565 Leu4 LeuCAA_iv 5_flank/tRNA no 314 35.535259 302.245393 168.890326 2.227604774 0.048799 191 48 20646 YHR203C spliced yes 40 21 38 35.722615 300.227067 167.974841 2.225244239 0.067535 191 49 1427 Leu2 LeuCAA_ii 5_flank no 314 33.562439 284.888777 159.225608 2.202012916 0.150803 191 50 11708 "rRNA(18S,5.8S,25S)" 25S yes 7956 5426 5441 412.144542 553.672389 482.9084655 2.683864819 0.414485 191 51 11853 "rRNA(18S,5.8S,25S)" 25S yes 7956 6151 6170 33.471058 286.01604 159.743549 2.203423329 0.140685 191 52 7415 snR69 5_flank no 301 31.045553 294.490763 162.768158 2.211569449 0.008371 191 53 12615 MT_15S 15S yes 1848 976 997 30.869561 310.438159 170.65386 2.232116116 -0.094663 191 54 17665 YKL006C exon/intron no 241 41 58 32.949734 303.03315 167.991442 2.225287158 0.011087 191 55 2415 Phe4 PheGAA_iv 3_flank no 291 32.83159 265.120838 148.976214 2.173116933 0.259164 191 56 9142 snR7 U5 RNA 5_flank no 415 34.979373 300.542071 167.760722 2.224690287 0.056237 191 57 21420 Trp1 spliced yes 40 1 15 37.14312 295.352064 166.247592 2.220755364 0.124139 191 58 7081 snR63 5_flank no 455 32.645759 299.332937 165.989348 2.220080219 0.030826 191 59 10446 RUF8 RUF8 yes 1151 156 174 30.367975 355.444468 192.9062215 2.285346234 -0.416941 191 60 732 Gln4 GlnTTG_iii 5_flank no 272 34.701961 315.559124 175.1305425 2.243361893 -0.067557 191 61 10617 RUF8 3_flank no 1151 45.663058 299.449916 172.556487 2.236931291 0.114688 191 62 8660 LSR1 / U2 RNA 5_flank no 1375 32.39896 291.295185 161.8470725 2.209104848 0.073017 191 63 10483 RUF8 RUF8 yes 1151 341 358 37.926095 317.498658 177.7123765 2.249717675 -0.069695 191 64 971 Gly1 GlyCCC_i 3_flank no 272 32.504967 298.609132 165.5570495 2.218947678 0.03077 191 65 12469 5S rRNA 5S yes 1420 1301 1315 1610.848308 1601.930011 1606.38916 3.205850765 0.333681 191 66 7451 snR69 3_flank no 301 32.764401 270.002855 151.383628 2.180078909 0.224483 191 67 1420 Leu1 LeuCAA_i 3_flank no 315 32.871089 293.792849 163.331969 2.213071198 0.072405 191 68 2874 Pro7 ProTGG_vi 3_flank no 303 30.689053 321.731996 176.2105245 2.246031844 -0.16658 191 69 2975 Ser1 SerAGA_i 3_flank no 283 28.445632 287.42778 157.936706 2.198483076 -0.071218 191 70 21071 YMR225C spliced yes 40 13 29 39.524353 316.202273 177.863313 2.250086378 -0.054495 191 71 9995 RUF5-1 3_flank no 975 37.191181 314.747146 175.9691635 2.24543657 -0.047162 191 72 9506 RUF3 5_flank no 631 46.008429 352.197358 199.1028935 2.299077572 -0.316685 191 73 3117 Ser4 SerGCT 5_flank/tRNA no 301 32.650558 271.953707 152.3021325 2.182705984 0.207593 191 74 16178 YDR305C intron no 189 121 138 30.474228 296.581206 163.527717 2.213591374 -0.024048 191 75 4150 SRP SRP yes 875 641 656 43.941939 290.892229 167.417084 2.223799773 0.188747 191 76 11989 "rRNA(18S,5.8S,25S)" 25S/3_ETS no 7956 6831 6853 32.954032 294.141092 163.547562 2.213644074 0.072855 191 77 11096 "rRNA(18S,5.8S,25S)" 18S yes 7956 2366 2379 369.552708 484.524606 427.038657 2.630467191 0.530142 191 78 19756 Negative Control no 60 NA #VALUE! 51.568476 298.428551 174.9985135 2.24303436 0.148645 191 79 1367 Leu1 LeuCAA_i 5_flank no 315 33.616474 309.571837 171.5941555 2.234502492 -0.033376 191 80 8277 snoRNA cluster4 snR67/intergenic no 638 171 192 29.254124 289.612081 159.4331025 2.202578497 -0.037753 191 81 18158 YLR426W intron no 171 101 118 34.032788 262.467271 148.2500295 2.170994788 0.31626 191 82 13133 MT_COX1 ai3 no 13084 6196 6218 29.56037 287.042319 158.3013445 2.199484603 -0.009704 191 83 19280 YPL143W intron no 625 481 498 31.979977 268.934715 150.457346 2.177413397 0.199309 191 84 522 Cys1 CysGCA 5_flank no 272 39.028243 287.703572 163.3659075 2.21316143 0.208257 191 85 18323 YML085C intron/exon no 216 161 176 36.696708 283.52705 160.111879 2.204423554 0.220112 191 86 16949 YGR027C intron no 412 341 362 31.97635 303.288827 167.6325885 2.224358451 -0.014982 191 87 20778 YKL006C-A spliced yes 40 21 38 34.154316 299.541874 166.848095 2.222321252 0.054592 191 88 18040 YLR333C intron no 523 81 98 36.227682 304.198793 170.2132375 2.230993332 0.040869 191 89 17743 YKL157W 5_exon no 483 1 15 38.180556 282.794779 160.4876675 2.205441665 0.242916 191 90 18762 YNL162W intron/exon no 612 561 578 35.493109 274.004935 154.749022 2.189627913 0.280926 191 91 49 Ala1 AlaAGC 3_flank no 273 30.582736 305.728108 168.155422 2.225710875 -0.076262 191 92 9552 RUF3 RUF3 yes 631 146 160 43.327148 277.088627 160.2078875 2.204683894 0.322837 191 93 2264 Phe2 PheGAA_ii 5_flank no 292 37.295257 310.81008 174.0526685 2.240680686 -0.011737 191 94 9676 RUF4 RUF4 yes 988 156 173 37.874758 303.979093 170.9269255 2.232810481 0.051765 191 95 20518 YGR034W spliced yes 40 5 21 39.550244 310.31179 174.931017 2.242866821 -0.001893 191 96 3719 Val3 ValCAC 3_flank no 273 69.720017 307.130499 188.425258 2.275139119 0.171927 191 97 11330 "rRNA(18S,5.8S,25S)" 25S yes 7956 3536 3552 47485.33244 7384.996325 27435.16438 4.438307567 2.007319 191 98 4448 telomerase RNA telomerase yes 1501 1276 1288 118.294229 347.722174 233.0082015 2.367371208 0.177121 191 99 2829 Pro7 ProTGG_vi 5_flank no 303 42.283915 344.229586 193.2567505 2.286134673 -0.277012 191 100 9514 RUF3 5_flank no 631 33.857213 296.440907 165.14906 2.217876106 0.076692 191 101 3712 Val3 ValCAC tRNA yes 273 41 53 62.187812 317.360702 189.774257 2.2782373 0.04651 191 102 12506 MT_tRNA Pro 3_flank no 272 241 262 31.517968 302.010232 166.7641 2.222102564 -0.022281 191 103 4535 U3b (snR17b) U3b yes 662 231 243 37.510162 269.943959 153.7270605 2.186750323 0.350516 191 104 12715 MT_ORF 8 ORF8/3_flank no 491 391 419 29.382097 303.722674 166.5523855 2.221550857 -0.105966 192 2 16999 YGR118W intron no 420 321 340 30.759274 317.747795 174.2535345 2.241181596 -0.14125 192 3 13371 MT_COX1 intronic no 13084 9766 9792 32.581896 291.349571 161.9657335 2.209423142 0.078553 192 4 18220 YML026C 5_exon no 501 1 19 30.468494 302.646456 166.557475 2.221564128 -0.061517 192 5 12792 MT_COX1 ai1 no 13084 1081 1098 32.274623 302.995381 167.635002 2.224364704 -0.003504 192 6 6453 snR45 snR45 yes 372 111 127 32.166713 279.886102 156.0264075 2.193198109 0.139068 192 7 15734 YBR230C intron/exon no 197 141 155 63.128629 352.716231 207.92243 2.317901342 -0.211003 192 8 2112 Met1 MetCAT_i 5_flank no 273 34.053968 281.650552 157.85226 2.198250804 0.187033 192 9 11312 "rRNA(18S,5.8S,25S)" 25S yes 7956 3446 3463 53523.15889 23268.01272 38395.5858 4.584281298 0.248619 192 10 17891 YLR048W intron no 459 341 361 36.233383 313.196796 174.7150895 2.242330415 -0.035748 192 11 15387 YBL040C 5_exon no 197 21 37 37.41313 311.92666 174.669895 2.242218059 -0.021468 192 12 17614 YJR021C intron no 180 61 75 52.428117 306.406542 179.4173295 2.253864388 0.083062 192 13 15829 YDL075W 5_exon no 521 21 38 36.916633 307.58347 172.2500515 2.23615936 0.01649 192 14 18218 YML025C 3_exon no 199 161 177 37.190724 298.379961 167.7853425 2.224754019 0.099463 192 15 21916 copy of SH19999 no 40 71.837785 350.689366 211.2635755 2.324824626 -0.138111 192 16 7216 snR64 3_flank no 301 39.877773 351.977177 195.927475 2.292095342 -0.347922 192 17 11740 "rRNA(18S,5.8S,25S)" 25S yes 7956 5586 5603 46.432395 316.204396 181.3183955 2.258441867 -0.029856 192 18 17711 YKL081W intron no 426 221 240 32.429123 284.516801 158.472962 2.199955175 0.117339 192 19 16914 YGL251C exon/intron no 252 41 58 32.734889 295.935963 164.335426 2.215731195 0.054687 192 20 13648 MT_ATP6 ATP6 yes 980 526 545 28.808254 307.612076 168.210165 2.225852237 -0.14999 192 21 8603 snR19 / U1 RNA U1 yes 868 511 528 37.432552 334.968641 186.2005965 2.269981068 -0.220552 192 22 19750 Negative Control no 60 NA #VALUE! 35.505177 282.642913 159.074045 2.201599325 0.214163 192 23 18622 YNL096C intron no 445 61 80 29.293276 316.275511 172.7843935 2.237504513 -0.183692 192 24 19699 Negative Control no 60 NA #VALUE! 38.046276 297.353222 167.699749 2.224532413 0.113754 192 25 76 Ala2 AlaTGC tRNA yes 273 16 28 31.863177 300.338925 166.101051 2.22037238 -0.000688 192 26 12171 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7741 7764 32.198968 275.101713 153.6503405 2.186533527 0.171859 192 27 6298 snR42 snR42 yes 551 271 285 37.035636 284.770335 160.9029855 2.206564102 0.213106 192 28 9238 snR6 / U6 RNA U6 yes 312 61 73 46.546704 307.69202 177.119362 2.248266039 0.042941 192 29 18464 YMR143W intron no 644 281 297 35.761362 278.401176 157.081269 2.196124401 0.25451 192 30 15073 MT_COX 2; ORF1 ORF1exon1 yes 2427 1696 1717 31.543092 311.375287 171.4591895 2.234160766 -0.077674 192 31 21299 YPL198W spliced yes 40 17 34 34.046393 306.211471 170.128932 2.230778176 -0.001141 192 32 16300 YDR450W intron no 535 281 298 31.793641 298.309779 165.05171 2.217620028 0.009512 192 33 14395 MT_21S 21S_rRNA3 yes 4639 136 157 31.722316 302.675989 167.1991525 2.223234072 -0.019586 192 34 8177 snoRNA cluster 3; snR70 yes 743 396 410 66.204577 356.214381 211.209479 2.324713405 -0.215342 192 35 492 Asp2 AspGTC_ii tRNA yes 272 21 35 470.802665 724.106783 597.454724 2.776304999 0.101368 192 36 9480 RUF2 RUF2 yes 468 241 260 31.251871 302.378445 166.815158 2.222235511 -0.033377 192 37 10486 RUF8 RUF8 yes 1151 356 374 35.682464 288.689601 162.1860325 2.21001345 0.163913 192 38 10030 RUF6 5_flank/RUF6 no 1251 31.08787 315.069861 173.0788655 2.23824404 -0.114571 192 39 2787 Pro6 ProTGG_v tRNA/intron no 302 27 i2 33.290286 286.626009 159.9581475 2.204006366 0.131108 192 40 12164 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7706 7721 329.145685 1060.675254 694.9104695 2.841928855 -0.972179 192 41 4161 SRP 3_flank no 875 72.899515 321.117569 197.008542 2.294485057 0.080793 192 42 17428 YIL133C exon/intron no 390 41 57 32.968183 308.953979 170.961081 2.232897255 -0.036502 192 43 11341 "rRNA(18S,5.8S,25S)" 25S yes 7956 3591 3608 53591.1022 23063.1403 38327.12125 4.583506201 0.264844 192 44 10108 RUF6 RUF6 yes 1251 386 405 35.037241 318.467539 176.75239 2.247365295 -0.086249 192 45 7557 snR79 3_flank no 284 32.854747 329.265051 181.059899 2.257822274 -0.19528 192 46 12424 5S rRNA NTS2 no 1420 1076 1093 37.467384 295.741332 166.604358 2.221686357 0.124483 192 47 10677 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 271 287 73.071689 337.210292 205.1409905 2.312052448 -0.035805 192 48 21207 YOR096W spliced yes 40 1 18 33.36508 303.080154 168.222617 2.225884385 0.015891 192 49 6067 snR37 snR37 yes 586 251 268 31.217542 301.093061 166.1553015 2.220514203 -0.026682 192 50 15692 YBR220C 5_exon no 521 1 17 31.234055 298.292448 164.7632515 2.216860354 -0.008924 192 51 14240 MT_Ser 5_flank no 290 76 98 33.41729 298.424843 165.9210665 2.219901531 0.054792 192 52 17929 YLR078C 3_exon no 189 161 179 42.301079 308.520554 175.4108165 2.24405637 0.021943 192 53 10384 RUF7 3_flank no 700 39.821949 300.121249 169.971599 2.23037636 0.092029 192 54 4960 snR9 3_flank no 387 35.159871 302.048079 168.603975 2.226867809 0.046016 192 55 19507 ACT1 ACT1 yes 401 41 59 35.04508 292.160825 163.6029525 2.213791137 0.126912 192 56 12695 MT_ORF 8 5_flank/ORF8 no 491 91 119 30.532056 305.078175 167.8051155 2.224805196 -0.074076 192 57 13400 MT_COX1 intronic no 13084 10201 10226 32.707937 345.249553 188.978745 2.276412961 -0.317338 192 58 18619 YNL096C 5_exon no 445 1 17 39.317092 283.087064 161.202078 2.207370636 0.252509 192 59 20751 YJR021C spliced yes 40 9 21 40.353742 278.498298 159.42602 2.202559204 0.302167 192 60 3563 Tyr2 TyrGTA_ii tRNA/3_flank no 289 34.742751 315.047593 174.895172 2.242777821 -0.063062 192 61 593 Gln1 GlnCTG tRNA yes 272 6 23 34.684338 296.577174 165.630756 2.219140984 0.08555 192 62 11421 "rRNA(18S,5.8S,25S)" 25S yes 7956 3991 4009 41.284312 316.9598 179.122056 2.253149066 -0.055545 192 63 21406 Ser3 spliced yes 40 1 15 1097.886752 2417.654054 1757.770403 3.244962148 -0.816971 192 64 4171 SRP 3_flank no 875 39.237555 290.106908 164.6722315 2.216620371 0.185502 192 65 7436 snR69 snR69 yes 301 81 98 37.18316 313.298367 175.2407635 2.243635137 -0.034291 192 66 9495 RUF2 3_flank no 468 30.664344 335.629364 183.146854 2.262799463 -0.271161 192 67 9384 RUF1 RUF1 yes 750 496 513 37.505078 303.424326 170.464702 2.231634464 0.055973 192 68 6395 snR43 3_flank no 409 30.848314 322.596375 176.7223445 2.247291465 -0.170805 192 69 10057 RUF6 RUF6 yes 1251 131 150 33.089257 306.818652 169.9539545 2.230331274 -0.017844 192 70 18408 YMR125W intron no 422 301 320 30.790014 306.852478 168.821246 2.227427101 -0.075967 192 71 9360 RUF1 RUF1 yes 750 376 392 30.708049 299.510092 165.1090705 2.217770932 -0.034159 192 72 18689 YNL112W intron no 1102 961 977 55.25397 356.93338 206.093675 2.314064664 -0.292805 192 73 7597 snR189 snR189 yes 389 56 68 46.224437 274.370128 160.2972825 2.20492616 0.356354 192 74 16004 YDL137W intron no 432 161 173 44.019161 321.71929 182.8692255 2.262140626 -0.087293 192 75 8764 LSR1 / U2 RNA U2 yes 1375 461 480 30.706944 338.720819 184.7138815 2.266499534 -0.293245 192 76 3213 Thr1 ThrAGT 5_flank no 273 30.840779 303.816807 167.328793 2.223570678 -0.055942 192 77 5098 snR11 snR11 yes 458 91 112 31.012996 288.860971 159.9369835 2.203948901 0.042814 192 78 2225 Phe1 PheGAA_i tRNA yes 292 1 13 31.205268 271.868555 151.5369115 2.180518432 0.146758 192 79 8822 LSR1 / U2 RNA U2 yes 1375 751 765 33.680367 302.612448 168.1464075 2.225687593 0.023602 192 80 21029 YMR116C spliced yes 40 13 29 33.866197 297.181619 165.523908 2.218860731 0.070634 192 81 10913 "rRNA(18S,5.8S,25S)" 18S yes 7956 1451 1464 436.840813 594.256402 515.5486075 2.712269618 0.356919 192 82 20540 YGR183C spliced yes 40 17 36 34.124239 276.957721 155.54098 2.191844831 0.220121 192 83 20349 YER102W spliced yes 40 13 32 34.185479 302.727706 168.4565925 2.226488012 0.028824 192 84 8413 snoRNA cluster 5 snR190 yes 586 231 247 31.882525 325.471808 178.6771665 2.252069057 -0.179082 192 85 6950 snR58 3_flank no 296 31.847779 282.443995 157.145887 2.196303019 0.111912 192 86 3632 Val2 ValAAC_ii 5_flank no 274 34.065879 307.66821 170.8670445 2.232658307 -0.012633 192 87 811 Glu1 GluCTC tRNA/3_flank no 272 33.904143 307.329317 170.61673 2.232021614 -0.01188 192 88 19055 YOR234C intron no 627 481 498 33.669263 310.863365 172.266314 2.236200361 -0.043015 192 89 9110 snR14 / U4 RNA 3_flank no 360 31.099907 292.038928 161.5694175 2.208359159 0.025591 192 90 19898 snR17A spliced yes 40 21 38 31.86078 304.175195 168.0179875 2.225355778 -0.024135 192 91 19974 YBL087C spliced yes 40 5 24 30.338932 341.074554 185.706743 2.268827673 -0.315351 192 92 13670 MT_ATP6 ATP6 yes 980 856 875 32.082048 309.444859 170.7634535 2.232394929 -0.051707 192 93 5420 snR31 snR31 yes 425 166 178 76.052218 299.536256 187.794237 2.273682261 0.270118 192 94 16186 YDR367W intron no 201 101 118 33.334879 315.425438 174.3801585 2.241497068 -0.083152 192 95 15588 YBR084C intron no 606 521 539 35.051602 337.256793 186.1541975 2.269872833 -0.245574 192 96 8739 LSR1 / U2 RNA U2 yes 1375 336 352 34.712816 282.219395 158.4661055 2.199936385 0.203328 192 97 15489 YBL092W intron no 433 161 178 33.393795 310.821841 172.107818 2.235800599 -0.046086 192 98 18355 YMR033W 5_exon no 186 21 36 34.170025 281.055585 157.612805 2.197591498 0.194479 192 99 11774 "rRNA(18S,5.8S,25S)" 25S yes 7956 5756 5773 1391.806592 1438.962791 1415.384692 3.150874494 0.312155 192 100 2458 Phe5 PheGAA_v tRNA yes 291 43 57 1025.459107 498.804002 762.1315545 2.882029943 1.656628 192 101 11518 "rRNA(18S,5.8S,25S)" 25S yes 7956 4476 4494 31.590022 338.115681 184.8528515 2.266826154 -0.277086 192 102 5605 snR34 5_flank no 750 32.506838 326.415607 179.4612225 2.253970622 -0.178208 192 103 3602 Val1 ValAAC_i tRNA yes 274 6 18 45.659991 272.435457 159.047724 2.201527459 0.374945 192 104 4665 snR3 3_flank no 395 29.418231 263.118372 146.2683015 2.165150218 0.098692 193 2 18873 YNR053C intron no 631 441 458 34.503365 313.736116 174.1197405 2.240848011 -0.055615 193 3 810 Glu1 GluCTC tRNA/3_flank no 272 31.406693 304.729025 168.067859 2.225484668 -0.042474 193 4 3356 Thr3 ThrTGT_i 3_flank no 272 45.904527 297.73371 171.8191185 2.235071487 0.131205 193 5 2267 Phe2 PheGAA_ii 5_flank no 292 34.081376 284.499126 159.290251 2.202189197 0.169345 193 6 15484 YBL092W intron no 433 61 80 28.240958 288.309629 158.2752935 2.199413128 -0.086517 193 7 9662 RUF4 RUF4 yes 988 86 102 81.293023 334.01613 207.6545765 2.317341507 0.039838 193 8 10302 RUF7 RUF7 yes 700 121 138 35.031229 290.659857 162.845543 2.211775877 0.139477 193 9 11912 "rRNA(18S,5.8S,25S)" 25S yes 7956 6446 6467 48.754029 302.329939 175.541984 2.244381003 0.100574 193 10 10968 "rRNA(18S,5.8S,25S)" 18S yes 7956 1726 1743 881.860282 1758.941484 1320.400883 3.120705806 -0.599673 193 11 7770 snoRNA cluster1 snR76/intergenic no 1574 646 663 30.680539 287.61469 159.1476145 2.201800133 0.039521 193 12 4533 U3b (snR17b) U3b yes 662 221 237 34.810108 291.896075 163.3530915 2.213127358 0.126367 193 13 3534 Tyr2 TyrGTA_ii 5_flank no 289 31.082694 299.638796 165.360745 2.21843242 -0.022288 193 14 15837 YDL075W intron no 521 181 203 29.312021 297.15196 163.2319905 2.212805277 -0.068906 193 15 16357 YDR500C intron no 439 421 437 33.552698 312.103209 172.8279535 2.237613987 -0.054288 193 16 3461 Trp1 TrpCCA 3_flank no 306 49.08838 330.076851 189.5826155 2.277798511 -0.129538 193 17 10952 "rRNA(18S,5.8S,25S)" 18S yes 7956 1646 1664 10884.17002 12934.97257 11909.5713 4.075896129 -0.72522 193 18 2653 Pro4 ProTGG_iii 5_flank no 302 34.500198 288.929702 161.71495 2.208750171 0.147907 193 19 4848 snR8 snR8 yes 390 21 37 46.278017 305.272298 175.7751575 2.244957496 0.063772 193 20 10653 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 151 168 39.247311 324.647611 181.947461 2.259946 -0.128488 193 21 9356 RUF1 RUF1 yes 750 356 378 31.032714 296.086084 163.559399 2.213675506 -0.002008 193 22 12202 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7896 7913 35.396129 323.190905 179.293517 2.253564586 -0.125649 193 23 9666 RUF4 RUF4 yes 988 106 121 31.301654 302.357261 166.8294575 2.222272738 -0.031586 193 24 14452 MT_21S 21S_rRNA3 yes 4639 991 1010 59.363395 357.289256 208.3263255 2.318744154 -0.268552 193 25 20976 YML034W spliced yes 40 25 39 62.014852 317.336978 189.675915 2.278012188 0.045705 193 26 11530 "rRNA(18S,5.8S,25S)" 25S yes 7956 4536 4555 60.500361 407.836757 234.168559 2.369528583 -0.583825 193 27 14942 MT_Met 5_flank no 276 1 27 30.305841 308.135947 169.220894 2.228453985 -0.100203 193 28 21421 Trp1 spliced yes 40 5 19 39.706737 299.5433 169.6250185 2.229489908 0.09715 193 29 15507 YBR048W intron no 611 101 117 35.720365 307.090292 171.4053285 2.234024319 0.01165 193 30 4401 telomerase RNA telomerase yes 1501 1041 1057 31.54076 317.894749 174.7177545 2.242337039 -0.125331 193 31 3051 Ser3 SerCGA 5_flank no 301 34.080907 304.34639 169.2136485 2.22843539 0.014377 193 32 19203 YPL081W intron no 601 221 238 31.860792 288.430801 160.1457965 2.204515544 0.073721 193 33 20190 YDL219W spliced yes 40 13 32 29.514226 288.859248 159.186737 2.201906881 -0.020534 193 34 708 Gln3 GlnTTG_ii tRNA/3_flank no 272 29.404408 316.864514 173.134461 2.238383519 -0.183164 193 35 6683 snR49 5_flank no 365 31.559348 281.77143 156.665389 2.194973061 0.106802 193 36 19038 YOR234C intron no 627 141 155 70.536556 339.351379 204.9439675 2.311635139 -0.068168 193 37 15970 YDL130W 3_exon no 401 381 396 74.001779 337.696176 205.8489775 2.313548714 -0.033105 193 38 4018 SRP 5_flank no 875 33.529415 276.874067 155.201741 2.190896589 0.202315 193 39 44 Ala1 AlaAGC 3_flank no 273 33.447481 262.123943 147.785712 2.169632448 0.300555 193 40 16861 YGL187C intron no 442 81 97 37.860202 328.898118 183.37916 2.263349979 -0.168414 193 41 15421 YBL059W 3_exon no 169 141 155 70.577211 286.443074 178.5101425 2.251662897 0.350844 193 42 13159 MT_COX1 intronic no 13084 6586 6600 31.889138 288.166904 160.028021 2.204196035 0.076334 193 43 10672 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 246 263 32.85681 284.93092 158.893865 2.201107129 0.128342 193 44 4031 SRP SRP yes 875 46 66 30.551729 300.37071 165.4612195 2.218696221 -0.044772 193 45 11418 "rRNA(18S,5.8S,25S)" 25S yes 7956 3976 3989 50.641711 305.298513 177.970112 2.250347074 0.084111 193 46 3756 Val4 ValTAC tRNA yes 274 6 20:B 64.321342 323.061802 193.691572 2.287110724 0.013531 193 47 1442 Leu2 LeuCAA_ii 5_flank no 314 35.307129 293.104685 164.205907 2.215388776 0.122025 193 48 18549 YMR230W intron no 510 361 378 33.232316 283.630233 158.4312745 2.199840916 0.148633 193 49 2621 Pro3 ProTGG_ii intron/tRNA no 303 i20 41 91.215828 357.592889 224.4043585 2.351031288 -0.053671 193 50 20103 YDL061C spliced yes 40 9 30 33.340727 294.788806 164.0647665 2.215015325 0.080987 193 51 20788 YKL081W spliced yes 40 13 32 30.989206 310.671074 170.83014 2.232564497 -0.092004 193 52 19024 YOR182C intron no 511 361 378 31.958912 302.18657 167.072741 2.222905598 -0.008848 193 53 5434 snR31 3_flank no 425 32.906951 293.359094 163.1330225 2.212541883 0.076263 193 54 7609 snR189 snR189 yes 389 116 133 30.544883 295.401185 162.973034 2.212115751 -0.014289 193 55 18276 YML056C intron no 508 401 419 32.679194 298.110909 165.3950515 2.218522512 0.039427 193 56 10985 "rRNA(18S,5.8S,25S)" 18S yes 7956 1811 1828 6800.440993 11031.76787 8916.104429 3.950175146 -1.033796 193 57 5645 snR34 snR34 yes 750 146 165 32.620861 337.216677 184.918769 2.266980994 -0.257211 193 58 5034 snR10 snR10 yes 445 201 213 39.246266 295.166553 167.2064095 2.223252921 0.137212 193 59 3244 Thr1 ThrAGT 3_flank no 273 30.365313 306.117277 168.241295 2.225932603 -0.086054 193 60 18601 YNL069C intron no 549 181 202 30.331264 316.718118 173.524691 2.23936128 -0.149906 193 61 6653 snR48 snR48 yes 313 91 110 30.307711 287.296356 158.8020335 2.200856059 0.027912 193 62 4454 telomerase RNA 3_flank no 1501 43.569502 319.3753 181.472401 2.258810585 -0.068697 193 63 5274 snR30 snR30 yes 801 221 237 39.216054 273.283783 156.2499185 2.193819799 0.338543 193 64 20221 YDR092W spliced yes 40 13 30 37.134669 312.176022 174.6553455 2.242181882 -0.024383 193 65 18682 YNL112W intron no 1102 821 840 32.855802 288.004734 160.430268 2.205286309 0.108554 193 66 15476 YBL091C intron no 188 81 98 30.788498 286.386993 158.5877455 2.200269625 0.051064 193 67 3690 Val3 ValCAC 5_flank no 273 30.922333 298.033459 164.477896 2.216107542 -0.017798 193 68 9931 RUF5-1 RUF5-1 yes 975 461 477 31.00031 290.750159 160.8752345 2.206489193 0.030385 193 69 8215 snoRNA cluster 3; snR51 yes 743 586 600 40.041798 277.246903 158.6443505 2.200424611 0.311589 193 70 11552 "rRNA(18S,5.8S,25S)" 25S yes 7956 4646 4664 30.95605 272.201483 151.5787665 2.180638369 0.132669 193 71 20049 YBR191W spliced yes 40 13 29 34.23786 300.053739 167.1457995 2.223095467 0.051384 193 72 17363 YIL052C intron no 572 161 177 33.02439 303.761463 168.3929265 2.226323845 0.006092 193 73 17815 YKR057W intron no 422 161 177 32.968974 299.955595 166.4622845 2.221315851 0.036556 193 74 14702 MT_Thr2 tRNA yes 276 106 124 30.734759 309.127475 169.931117 2.230272912 -0.091443 193 75 17193 YHR021C intron no 650 441 462 33.032364 300.497939 166.7651515 2.222105302 0.032887 193 76 20667 YIL069C spliced yes 40 5 24 30.906547 306.814403 168.860475 2.227528007 -0.071794 193 77 5218 snR30 5_flank no 801 31.060362 285.691286 158.375824 2.199688887 0.064723 193 78 13529 MT_COX1 intronic no 13084 12136 12160 31.234453 312.276888 171.7556705 2.234911084 -0.093265 193 79 10034 RUF6 RUF6 yes 1251 16 33 31.404715 289.797701 160.601208 2.205748808 0.04996 193 80 6157 snR39B 3_flank no 296 31.548641 267.916041 149.732341 2.175315615 0.183263 193 81 12869 MT_COX1 ai1 no 13084 2236 2257 31.650616 300.345288 165.997952 2.22010273 -0.007717 193 82 16973 YGR034W intron no 454 241 258 38.625917 319.720801 179.173359 2.253273436 -0.087513 193 83 1627 Leu5 LeuCAA_v tRNA yes 315 1 13 58.348311 286.507451 172.427881 2.236607491 0.288087 193 84 12698 MT_ORF 8 ORF8 yes 491 136 154 31.677568 298.001713 164.8396405 2.217061659 0.007595 193 85 19618 RNA14 1.1 RNA14 1.1 yes 401 261 279 32.7512 294.933482 163.842341 2.214426145 0.061455 193 86 4460 telomerase RNA 3_flank no 1501 33.774743 343.965195 188.869969 2.276162909 -0.303994 193 87 13226 MT_COX1 ai4 no 13084 7591 7610 31.322943 311.968938 171.6459405 2.234633537 -0.088494 193 88 259 Arg3 ArgCCG 3_flank no 272 46.9623 320.529999 183.7461495 2.264218247 -0.062936 193 89 16960 YGR029W 3_exon no 183 161 176 35.300105 297.841955 166.57103 2.221599471 0.08232 193 90 15135 MT_Phe 3_flank no 265 211 239 30.479546 343.633406 187.056476 2.271972748 -0.331908 193 91 666 Gln2 GlnTTG_i 3_flank no 272 32.278193 280.124338 156.2012655 2.193684548 0.141114 193 92 4421 telomerase RNA telomerase yes 1501 1141 1160 31.839411 321.323111 176.581261 2.246944614 -0.147938 193 93 3757 Val4 ValTAC tRNA yes 274 11 25 35.672964 272.459967 154.0664655 2.187708119 0.296615 193 94 12102 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7396 7411 53.212238 347.322324 200.267281 2.301610002 -0.237226 193 95 16073 YDR025W 5_exon no 439 1 15 34.856158 315.82214 175.339149 2.243878894 -0.067781 193 96 20814 YKL190W spliced yes 40 1 22 30.415559 316.115636 173.2655975 2.238712341 -0.143503 193 97 16095 YDR059C 5_exon no 190 1 18 36.344531 324.24087 180.2927005 2.255978144 -0.132297 193 98 5796 snR35 snR35 yes 740 166 188 32.033117 301.652988 166.8430525 2.222308127 -0.003172 193 99 7367 snR68 snR68 yes 336 56 75 31.857493 285.589682 158.7235875 2.200641471 0.091838 193 100 15747 YCR031C 5_exon no 407 21 38 54.073238 290.525601 172.2994195 2.236283814 0.231142 193 101 8113 snoRNA cluster 3; 5_flank no 743 76 97 31.608691 300.065043 165.836867 2.219681084 -0.007382 193 102 11235 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3061 3077 10361.77935 4009.321244 7185.550299 3.856460034 1.166578 193 103 21246 YPL031C spliced yes 40 5 22 35.568159 280.76092 158.1645395 2.199109121 0.231408 193 104 17073 YGR225W exon/intron no 193 41 55 37.633296 230.411018 134.022157 2.127176603 0.658104 194 2 5264 snR30 snR30 yes 801 171 185 32.387108 316.238789 174.3129485 2.241329649 -0.10146 194 3 3428 Trp1 TrpCCA 5_flank no 306 30.317268 308.676645 169.4969565 2.229161904 -0.103037 194 4 16270 YDR447C intron no 414 81 96 69.291104 324.848002 197.069553 2.294619532 0.031026 194 5 1749 Leu7 LeuTAA tRNA yes 284 40 e23 75.632905 320.180561 197.906733 2.29646057 0.105269 194 6 12717 MT_ORF 8 3_flank no 491 421 447 30.128665 301.373037 165.750851 2.219455767 -0.065466 194 7 15393 YBL040C intron/exon no 197 141 158 35.93383 284.411749 160.1727895 2.204588739 0.203714 194 8 9263 snR6 / U6 RNA 3_flank no 312 28.333309 301.07163 164.7024695 2.216700111 -0.139121 194 9 13326 MT_COX1 ai5a no 13084 9091 9113 31.380553 305.518802 168.4496775 2.226470184 -0.048109 194 10 11748 "rRNA(18S,5.8S,25S)" 25S yes 7956 5626 5641 50.171809 326.381567 188.276688 2.27479655 -0.094022 194 11 14228 MT_ATP9 ATP9/3 no 431 316 337 30.82012 304.904538 167.862329 2.224953244 -0.063221 194 12 19651 SIR1 2.2 SIR1 2.2 yes 401 141 160 31.034958 324.325906 177.680432 2.249639601 -0.181522 194 13 11696 "rRNA(18S,5.8S,25S)" 25S yes 7956 5366 5382 28150.32778 29892.21529 29021.27154 4.462716437 -0.954929 194 14 13063 MT_COX1 intronic no 13084 5146 5162 48.537851 327.807687 188.172769 2.274556776 -0.114098 194 15 19849 Negative Control no 60 NA #VALUE! 33.716735 270.617064 152.1668995 2.182320192 0.250218 194 16 1390 Leu1 LeuCAA_i tRNA yes 315 20:B 34 29.930611 284.468814 157.1997125 2.196451747 0.021629 194 17 13310 MT_COX1 ai5a no 13084 8851 8869 34.292305 289.848292 162.0702985 2.209703432 0.13756 194 18 9231 snR6 / U6 RNA U6 yes 312 26 45 32.519154 306.899906 169.70953 2.229706231 -0.025694 194 19 19812 Negative Control no 60 NA #VALUE! 36.933947 295.227533 166.08074 2.220319271 0.122843 194 20 20774 YKL006C-A spliced yes 40 5 21 37.151986 290.244432 163.698209 2.214043928 0.167349 194 21 15093 MT_COX 2; ORF1 intronic no 2427 1996 2012 35.204038 326.336969 180.7705035 2.257127568 -0.153213 194 22 16582 YFL034C 5_exon no 421 1 18 35.320775 269.460692 152.3907335 2.182958559 0.306634 194 23 18226 YML026C intron no 501 121 138 31.213672 329.487678 180.350675 2.256117772 -0.218167 194 24 5304 snR30 snR30 yes 801 371 383 39.902276 262.536857 151.2195665 2.179607989 0.444873 194 25 14397 MT_21S 21S_rRNA3 yes 4639 166 194 29.491959 326.22041 177.8561845 2.250068971 -0.233636 194 26 16965 YGR034W intron no 454 81 109 11935.75593 5868.515014 8902.13547 3.949494199 0.703754 194 27 5624 snR34 snR34 yes 750 41 60 34.648102 320.932157 177.7901295 2.249907646 -0.109926 194 28 15509 YBR048W intron no 611 141 158 30.717286 290.495187 160.6062365 2.205762405 0.022423 194 29 20467 YGL187C spliced yes 40 1 25 33.438903 313.353422 173.3961625 2.239039482 -0.065574 194 30 7539 snR79 snR79 yes 284 36 52 33.849792 280.667821 157.2588065 2.196614975 0.187188 194 31 11639 "rRNA(18S,5.8S,25S)" 25S yes 7956 5081 5098 6129.282869 10492.09753 8310.690201 3.919637093 -1.07684 194 32 2488 Pro1 ProAGG 5_flank no 272 45.910652 301.610317 173.7604845 2.239951019 0.09574 194 33 8192 snoRNA cluster 3; intergenic no 743 471 493 34.270482 313.632745 173.9516135 2.240428461 -0.057605 194 34 20379 YFL034C-A spliced yes 40 5 20 57.464328 289.517624 173.490976 2.23927689 0.256501 194 35 12101 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7391 7409 34.060916 314.488266 174.274591 2.241234072 -0.066877 194 36 10858 "rRNA(18S,5.8S,25S)" 18S yes 7956 1176 1194 32.792122 283.894793 158.3434575 2.199600124 0.132992 194 37 11441 "rRNA(18S,5.8S,25S)" 25S yes 7956 4091 4104 5106.637883 7706.383498 6406.510691 3.806621555 -0.784783 194 38 18401 YMR125W intron no 422 161 177 33.761401 287.252732 160.5070665 2.205494157 0.14176 194 39 10402 RUF8 5_flank no 1151 31.380108 271.616202 151.498155 2.180407344 0.156676 194 40 8491 snR19 / U1 RNA 5_flank no 868 33.519269 282.754112 158.1366905 2.199032646 0.163307 194 41 20620 YHR097C spliced yes 40 21 40 31.070666 287.141019 159.1058425 2.201686128 0.05575 194 42 14670 MT_21S 21S_rRNA4 yes 4639 4261 4287 30.869393 330.016311 180.442852 2.256339683 -0.226721 194 43 2376 Phe4 PheGAA_iv 5_flank no 291 35.148544 318.402454 176.775499 2.247422072 -0.084582 194 44 7553 snR79 3_flank no 284 32.783179 292.383137 162.583158 2.211075555 0.078464 194 45 21525 copy of SH3560 no 289 41.649586 291.527139 166.5883625 2.221644659 0.177304 194 46 14359 MT_ORF9; ORF10 ORF9 yes 578 151 172 32.809448 310.340061 171.5747545 2.234453386 -0.049562 194 47 8893 LSR1 / U2 RNA U2 yes 1375 1106 1122 32.930409 296.941621 164.936015 2.217315497 0.054659 194 48 11848 "rRNA(18S,5.8S,25S)" 25S yes 7956 6126 6143 5662.56481 18209.80564 11936.18523 4.07686555 -2.092078 194 49 18431 YMR142C intron no 502 121 137 35.35417 284.942382 160.148276 2.204522268 0.192374 194 50 742 Gln4 GlnTTG_iii 5_flank no 272 33.068259 319.540303 176.304281 2.246262858 -0.118508 194 51 14214 MT_ATP9 ATP9 yes 431 106 125 30.706724 298.679697 164.6932105 2.216675696 -0.029093 194 52 3536 Tyr2 TyrGTA_ii 5_flank no 289 30.54238 270.41576 150.47907 2.177476098 0.120531 194 53 3434 Trp1 TrpCCA tRNA yes 306 1 13 110.979206 344.246451 227.6128285 2.357196736 0.155609 194 54 18969 YOR096W intron no 501 61 82 30.273014 312.936904 171.604959 2.234529834 -0.1298 194 55 4891 snR8 3_flank no 390 36.826293 294.260329 165.543311 2.218911637 0.129744 194 56 9600 RUF3 RUF3 yes 631 386 405 31.324 326.570716 178.947358 2.252725291 -0.19473 194 57 21193 YOL120C spliced yes 40 21 35 36.858792 307.064037 171.9614145 2.235431009 0.021069 194 58 20258 YDR397C spliced yes 40 1 16 34.683452 276.720976 155.702214 2.192294788 0.238669 194 59 2914 Pro8 ProTGG_vii tRNA yes 305 59 71 59.082619 306.604606 182.8436125 2.262079793 0.116303 194 60 15791 YDL029W 3_exon no 223 181 196 36.914705 292.044147 164.479426 2.216111582 0.14942 194 61 3227 Thr1 ThrAGT 5_flank/tRNA no 273 30.316403 288.747992 159.5321975 2.202848347 0.019812 194 62 14256 MT_VAR1 5_flank no 1467 46 74 30.360744 312.068992 171.214868 2.233541475 -0.121665 194 63 7716 snoRNA cluster1 snR77 yes 1574 376 393 32.660425 302.085251 167.372838 2.22368498 0.014443 194 64 15924 YDL108W 5_exon no 181 21 40 46.183766 355.618787 200.9012765 2.302982696 -0.340685 194 65 7644 snoRNA cluster1 5_flank no 1574 16 33 32.978847 289.381961 161.180404 2.20731224 0.103674 194 66 6624 snR48 5_flank no 313 53.483259 328.290464 190.8868615 2.280776037 -0.090151 194 67 15817 YDL061C 3_exon no 509 481 497 31.056062 293.617877 162.3369695 2.210417434 0.01419 194 68 18997 YOR122C intron no 309 121 133 35.670667 285.367419 160.519043 2.205526562 0.192381 194 69 11058 "rRNA(18S,5.8S,25S)" 18S yes 7956 2176 2193 34858.0054 24584.00626 29721.00583 4.473063503 -0.368494 194 70 15995 YDL136W 3_exon no 505 481 497 93.501357 356.893503 225.19743 2.35256343 -0.034459 194 71 17069 YGR214W 3_exon no 555 521 538 31.004226 302.683789 166.8440075 2.222310613 -0.043543 194 72 18629 YNL096C intron no 445 201 217 35.399404 280.502255 157.9508295 2.198521911 0.231716 194 73 18350 YML124C intron no 398 321 343 35.311205 339.164088 187.2376465 2.272393174 -0.260657 194 74 10520 RUF8 RUF8 yes 1151 526 545 30.795909 303.312178 167.0540435 2.222856992 -0.054401 194 75 136 Arg1 ArgACG_i tRNA yes 273 56 68 53.336041 296.283499 174.80977 2.242565701 0.175965 194 76 9962 RUF5-1 RUF5-1 yes 975 616 635 35.406292 287.523923 161.4651075 2.208078686 0.170695 194 77 11342 "rRNA(18S,5.8S,25S)" 25S yes 7956 3596 3609 46621.55643 20016.04686 33318.80164 4.522689373 0.329101 194 78 21042 YMR133W spliced yes 40 17 34 33.464596 334.093238 183.778917 2.264295688 -0.22364 194 79 3492 Tyr1 TyrGTA_i tRNA yes 289 1 13 47.357138 281.196824 164.276981 2.215576713 0.292388 194 80 1610 Leu5 LeuCAA_v 5_flank no 315 31.470751 336.501921 183.986336 2.264785571 -0.266829 194 81 8104 snoRNA cluster 3; 5_flank no 743 31 45 40.731664 315.622502 178.177083 2.250851845 -0.045867 194 82 11183 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2801 2814 35.001155 271.604788 153.3029715 2.185550573 0.28255 194 83 11858 "rRNA(18S,5.8S,25S)" 25S yes 7956 6176 6194 14527.33192 10298.82261 12413.07727 4.093879459 0.00662 194 84 6329 snR42 3_flank no 551 31.444418 328.813657 180.1290375 2.255583728 -0.210056 194 85 18415 YMR133W 5_exon no 225 21 38 38.169019 302.879672 170.5243455 2.231786391 0.062595 194 86 20874 YLR185W spliced yes 40 5 22 37.993563 279.69954 158.8465515 2.200977791 0.268082 194 87 3255 Thr1 ThrAGT 3_flank no 273 34.391008 287.537768 160.964388 2.206729803 0.158529 194 88 18524 YMR225C intron no 247 101 120 30.791412 306.331898 168.561655 2.226758787 -0.072794 194 89 531 Cys1 CysGCA 5_flank no 272 32.740541 298.573074 165.6568075 2.219209287 0.038533 194 90 15441 YBL072C 3_exon no 408 381 397 34.596996 305.745067 170.1710315 2.230885631 0.009269 194 91 1584 Leu4 LeuCAA_iv tRNA yes 314 50 67 32.017768 306.233411 169.1255895 2.228209323 -0.031419 194 92 2797 Pro6 ProTGG_v tRNA yes 302 47 61 38.053783 300.473494 169.2636385 2.228563672 0.084605 194 93 10284 RUF7 RUF7 yes 700 31 45 43.96036 292.270956 168.115658 2.225608165 0.175837 194 94 2326 Phe3 PheGAA_iii 5_flank no 291 49.786891 302.360201 176.073546 2.245694111 0.105459 194 95 17116 YHR010W exon/intron no 661 41 57 32.645104 308.622011 170.6335575 2.232064445 -0.037922 194 96 2726 Pro5 ProTGG_iv tRNA yes 303 11 29 34.447657 301.161177 167.804417 2.224803388 0.044809 194 97 17196 YHR021C intron no 650 501 518 34.227654 274.772704 154.500179 2.188928987 0.237864 194 98 15805 YDL061C intron no 509 241 258 32.010324 309.935234 170.972779 2.232926971 -0.056547 194 99 16028 YDL191W 5_exon no 591 21 37 37.969298 296.207907 167.0886025 2.222946827 0.124351 194 100 15526 YBR048W intron no 611 481 499 29.740745 304.226002 166.9833735 2.222673231 -0.096346 194 101 2678 Pro4 ProTGG_iii intron/tRNA no 302 i20 41 45.894967 281.01604 163.4555035 2.213399548 0.289686 194 102 17963 YLR185W intron no 459 241 260 31.641062 368.510377 200.0757195 2.301194387 -0.502544 194 103 2502 Pro1 ProAGG tRNA yes 272 1 13 227.929144 347.231395 287.5802695 2.458759086 0.701766 194 104 13677 MT_ORF 5 5_flank no 331 1 27 31.61446 242.741297 137.1778785 2.137284082 0.317119 195 2 6777 snR50 snR50 yes 290 61 78 46.157295 333.358828 189.7580615 2.278200235 -0.170777 195 3 3905 RNase MRP 5_flank no 540 38.06828 335.238505 186.6533925 2.271035888 -0.220887 195 4 2878 Pro8 ProTGG_vii 5_flank no 305 34.054752 267.671784 150.863268 2.178583511 0.280782 195 5 2455 Phe5 PheGAA_v intron/tRNA no 291 i9 42 45.583836 294.807854 170.195845 2.230948953 0.157296 195 6 20647 YIL004C spliced yes 40 1 17 37.82357 285.531845 161.6777075 2.208650142 0.215223 195 7 15366 YBL027W intron no 484 81 98 32.108502 285.506944 158.807723 2.200871619 0.100567 195 8 11052 "rRNA(18S,5.8S,25S)" 18S yes 7956 2146 2162 15439.96709 15103.58083 15271.77396 4.183889487 -0.556035 195 9 3589 Val1 ValAAC_i 5_flank no 274 32.448264 314.301486 173.374875 2.238986161 -0.085492 195 10 13385 MT_COX1 exon5b yes 13084 9976 9992 36.615868 296.109712 166.36279 2.221056195 0.111888 195 11 1560 Leu4 LeuCAA_iv 5_flank no 314 30.990359 295.162387 163.076373 2.212391044 0.002319 195 12 16590 YFL034C intron no 421 161 177 31.23719 291.905025 161.5711075 2.208363702 0.031035 195 13 21558 copy of SH4784 no 404 37.485822 303.138622 170.312222 2.231245815 0.058558 195 14 10905 "rRNA(18S,5.8S,25S)" 18S yes 7956 1411 1430 16925.74432 22725.45319 19825.59875 4.297226312 -1.122838 195 15 15129 MT_Phe tRNA yes 265 121 140 31.935412 322.847373 177.3913925 2.248932543 -0.158387 195 16 12393 5S rRNA NTS2 no 1420 921 935 63.063685 333.610492 198.3370885 2.297403934 -0.074094 195 17 12913 MT_COX1 ai2 no 13084 2896 2910 36.559306 304.751859 170.6555825 2.2321205 0.040153 195 18 7374 snR68 snR68 yes 336 91 108 32.668986 302.15446 167.411723 2.223785866 0.014295 195 19 15840 YDL075W intron no 521 241 256 96.668071 405.803142 251.2356065 2.40008119 -0.301363 195 20 7726 snoRNA cluster1 intergenic no 1574 426 448 29.870383 324.607268 177.2388255 2.248558863 -0.211195 195 21 955 Gly1 GlyCCC_i tRNA yes 272 26 40 40.488957 282.08495 161.2869535 2.207599239 0.266718 195 22 14179 MT_COB exon6 yes 7308 6871 6889 31.086104 296.755754 163.920929 2.214634407 -0.004372 195 23 19546 CBP1 2.2 CBP1 2.2 yes 401 21 42 31.1852 297.112814 164.149007 2.21523826 -0.003263 195 24 12002 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6896 6913 33.477537 300.637203 167.05737 2.22286564 0.037285 195 25 9420 RUF2 5_flank no 468 33.762262 292.287666 163.024964 2.212254113 0.109795 195 26 17687 YKL006W intron no 498 241 255 42.863454 319.977141 181.4202975 2.258685875 -0.076188 195 27 1683 Leu6 LeuGAG 5_flank no 282 52.346434 303.638091 177.9922625 2.250401124 0.106638 195 28 14739 MT_Cys; His 3_flank no 456 406 434 30.739888 314.586538 172.663213 2.237199818 -0.123499 195 29 3809 RNaseP RNaseP yes 569 11 28 31.205255 323.968936 177.5870955 2.249411404 -0.176534 195 30 5152 snR13 5_flank no 324 99.503829 375.483788 237.4938085 2.375652292 -0.109372 195 31 6710 snR49 snR49 yes 365 76 93 34.202665 305.438828 169.8207465 2.229990746 0.006999 195 32 11267 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3221 3239 32.041372 319.503329 175.7723505 2.24495056 -0.131284 195 33 7048 snR62 snR62 yes 300 31 52 29.75176 293.931516 161.841638 2.209090265 -0.032579 195 34 2361 Phe3 PheGAA_iii 3_flank no 291 36.693856 259.920719 148.3072875 2.171162492 0.412825 195 35 1976 Lys2 LysCTT_ii 3_flank no 273 31.951007 326.199874 179.0754405 2.253036028 -0.183715 195 36 8223 snoRNA cluster 3; snR51 yes 743 626 645 31.861083 296.548153 164.204618 2.215385367 0.022629 195 37 15844 YDL075W intron no 521 321 338 34.090107 280.602798 157.3464525 2.196856956 0.195002 195 38 14034 MT_COB bi4 no 7308 4696 4711 34.004193 335.624496 184.8143445 2.266735676 -0.234788 195 39 16799 YGL137W intron no 300 61 75 36.191487 296.235764 166.2136255 2.220666623 0.106009 195 40 1730 Leu7 LeuTAA 5_flank no 284 36.017702 345.070392 190.544047 2.279995385 -0.307086 195 41 9761 RUF4 RUF4 yes 988 581 598 35.782693 318.652799 177.217746 2.248507209 -0.085146 195 42 20488 YGL232W spliced yes 40 13 32 32.12699 356.103972 194.115481 2.288060172 -0.405466 195 43 8632 snR19 / U1 RNA U1/3_flank no 868 33.007796 318.911133 175.9594645 2.245412632 -0.114395 195 44 11514 "rRNA(18S,5.8S,25S)" 25S yes 7956 4456 4469 54.058204 309.12411 181.591157 2.259094696 0.068744 195 45 7206 snR64 snR64/3_flank no 301 62.865734 333.519031 198.1923825 2.297086958 -0.074736 195 46 3351 Thr3 ThrTGT_i 3_flank no 272 32.720421 315.054455 173.887438 2.240268209 -0.087947 195 47 15449 YBL087C intron no 604 141 161 32.770396 338.983208 185.876802 2.269225192 -0.268229 195 48 12595 MT_15S 15S yes 1848 676 704 32.81565 325.995233 179.4054415 2.253835611 -0.171108 195 49 7891 snoRNA cluster1 intergenic no 1574 1251 1268 32.800518 317.782867 175.2916925 2.243761334 -0.108245 195 50 10328 RUF7 RUF7 yes 700 251 268 32.699246 315.599086 174.149166 2.240921399 -0.092484 195 51 16570 YER133W intron/exon no 625 561 583 34.735284 302.92331 168.829297 2.227447812 0.033834 195 52 19697 Negative Control no 60 NA #VALUE! 32.332277 292.680067 162.506172 2.21086986 0.062133 195 53 9546 RUF3 RUF3 yes 631 116 133 45.307723 296.835076 171.0713995 2.233177408 0.137633 195 54 9187 snR7 U5 RNA U5/3_flank no 415 83.553586 339.610348 211.581967 2.32547865 0.015704 195 55 957 Gly1 GlyCCC_i tRNA yes 272 36 48 49.557282 264.509368 157.033325 2.195991826 0.466666 195 56 1638 Leu5 LeuCAA_v intron/tRNA no 315 i18 39 32.133324 299.376082 165.754703 2.21946586 0.01404 195 57 14890 MT_Ile 5_flank no 276 1 29 32.220745 328.592516 180.4066305 2.256252495 -0.198295 195 58 18163 YLR448W exon/intron no 484 41 57 34.499215 283.339629 158.919422 2.201176977 0.189588 195 59 13578 MT_COX1 exon6 yes 13084 12871 12890 32.377496 314.368202 173.372849 2.238981086 -0.086921 195 60 14299 MT_VAR1 VAR1 yes 1467 691 719 30.24009 334.851613 182.5458515 2.261371968 -0.271196 195 61 16830 YGL178W intron no 740 381 400 32.506123 291.116149 161.811136 2.209008407 0.077597 195 62 2352 Phe3 PheGAA_iii tRNA/3_flank no 291 32.600332 297.634225 165.1172785 2.217792522 0.03985 195 63 15897 YDL083C 5_exon no 532 21 36 37.175808 300.399239 168.7875235 2.227340341 0.082628 195 64 12285 5S rRNA NTS2 no 1420 381 399 35.136867 312.99731 174.0670885 2.240716665 -0.042255 195 65 6178 snR40 5_flank no 297 37.593182 286.984735 162.2889585 2.210288973 0.20015 195 66 4911 snR9 5_flank no 387 40.074498 296.596404 168.335451 2.226175587 0.125616 195 67 45 Ala1 AlaAGC 3_flank no 273 39.125048 275.516061 157.3205545 2.196785468 0.317476 195 68 19291 YPL175W intron no 200 81 100 31.264487 322.234258 176.7493725 2.247357881 -0.162481 195 69 19207 YPL081W intron no 601 301 317 49.530189 295.874732 172.7024605 2.237298525 0.161428 195 70 12091 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7341 7354 344.086999 1860.644995 1102.365997 3.042325809 -1.871089 195 71 13743 MT_COB exon1 yes 7308 331 352 31.106866 306.85226 168.979563 2.227834183 -0.065275 195 72 6304 snR42 snR42 yes 551 301 316 33.237484 279.972722 156.605103 2.19480591 0.172692 195 73 8720 LSR1 / U2 RNA U2 yes 1375 241 259 30.877575 303.21629 167.0469325 2.222838505 -0.051054 195 74 21350 YPR132W spliced yes 40 17 29 35.294316 280.021354 157.657835 2.197715558 0.234726 195 75 21931 copy of SH21371 no 40 46.528432 304.645131 175.5867815 2.244491818 0.070182 195 76 7516 snR79 5_flank no 284 37.590257 283.260879 160.425568 2.205273586 0.232395 195 77 5590 snR33 3_flank no 383 33.208142 313.65711 173.432626 2.2391308 -0.070836 195 78 21161 YNL301C spliced yes 40 17 29 35.620448 294.227082 164.923765 2.217283241 0.116238 195 79 8644 snR19 / U1 RNA 3_flank no 868 33.506809 322.685619 178.096214 2.250654687 -0.13726 195 80 8286 snoRNA cluster4 intergenic no 638 216 233 31.345417 308.447545 169.896481 2.230184384 -0.066845 195 81 11426 "rRNA(18S,5.8S,25S)" 25S yes 7956 4016 4029 1375.478369 1717.011025 1546.244697 3.189278223 0.017613 195 82 14232 MT_ATP9 3_flank no 431 376 401 33.675016 330.710964 182.19299 2.260531663 -0.195898 195 83 9925 RUF5-1 RUF5-1 yes 975 431 452 33.601986 349.400643 191.5013145 2.282171759 -0.34827 195 84 8571 snR19 / U1 RNA U1 yes 868 351 367 56.280896 278.761634 167.521265 2.224069944 0.350085 195 85 7821 snoRNA cluster1 intergenic no 1574 901 918 31.065875 276.102725 153.5843 2.186346823 0.119222 195 86 13314 MT_COX1 ai5a no 13084 8911 8932 30.896932 311.488624 171.192778 2.233485439 -0.099957 195 87 10464 RUF8 RUF8 yes 1151 246 267 30.705448 302.466748 166.586098 2.221638756 -0.052334 195 88 6876 snR56 snR56 yes 288 11 32 41.583195 347.737789 194.660492 2.289277817 -0.307884 195 89 14437 MT_21S 21S_rRNA3 yes 4639 766 783 35.727446 322.201081 178.9642635 2.252766317 -0.116228 195 90 9140 snR7 U5 RNA 5_flank no 415 34.293404 275.4982 154.895802 2.190039648 0.235013 195 91 4817 snR5 3_flank no 404 38.23988 343.232457 190.7361685 2.280433054 -0.284886 195 92 17260 YHR101C intron no 187 81 102 31.409492 299.060169 165.2348305 2.218101599 -0.007808 195 93 8696 LSR1 / U2 RNA U2 yes 1375 121 140 37.387223 376.566514 206.9768685 2.315921812 -0.542335 195 94 6741 snR49 3_flank no 365 32.832841 305.704227 169.268534 2.228576233 -0.012072 195 95 20105 YDL061C spliced yes 40 17 38 30.485191 325.394183 177.939687 2.250272822 -0.197049 195 96 8946 snR17a / U3a U3a yes 690 16 34 34.389159 294.543004 164.4660815 2.216076345 0.09902 195 97 10078 RUF6 RUF6 yes 1251 236 252 34.207175 310.454123 172.330649 2.236362524 -0.033196 195 98 3579 Tyr2 TyrGTA_ii 3_flank no 289 32.027897 307.810943 169.91942 2.230243017 -0.040549 195 99 13237 MT_COX1 ai4 no 13084 7756 7777 29.894874 311.540233 170.7175535 2.232278178 -0.13469 195 100 11157 "rRNA(18S,5.8S,25S)" 18S yes 7956 2671 2684 1148.882625 635.771924 892.3272745 2.950524168 1.387885 195 101 14973 MT_COX 2; ORF1 COX2 no 2427 196 215 31.798443 335.297647 183.548045 2.263749763 -0.253679 195 102 21877 copy of SH18252 no 226 31.766166 306.552759 169.1594625 2.228296297 -0.041576 195 103 14483 MT_21S 21S_rRNA3 yes 4639 1456 1472 48.121457 308.232902 178.1771795 2.25085208 0.046322 195 104 14651 MT_21S 21S_rRNA4 yes 4639 3976 3995 37.881907 267.209926 152.5459165 2.183400587 0.379757 196 2 13849 MT_COB bi2 no 7308 1921 1942 28.426412 335.417725 181.9220685 2.259885385 -0.323253 196 3 2788 Pro6 ProTGG_v tRNA/intron no 302 32 i9 45.913901 298.139599 172.02675 2.235595985 0.127498 196 4 8347 snoRNA cluster4 snR53 yes 638 521 538 28.267642 302.124185 165.1959135 2.2179993 -0.147374 196 5 1771 Leu7 LeuTAA 3_flank no 284 28.219032 317.308062 172.763547 2.237452112 -0.228707 196 6 1135 Gly4 GlyTCC 3_flank no 272 63.045198 361.600945 212.3230715 2.326997188 -0.272909 196 7 21763 copy of SH13395 no 13084 28.288872 297.221624 162.755248 2.211535001 -0.124422 196 8 7865 snoRNA cluster1 intergenic/snR73 no 1574 1121 1142 32.297997 299.694227 165.996112 2.220097916 0.017422 196 9 4214 telomerase RNA telomerase yes 1501 106 123 30.590812 303.350047 166.9704295 2.222639564 -0.061609 196 10 8421 snoRNA cluster 5 snR190 yes 586 271 287 36.766803 290.362042 163.5644225 2.213688845 0.162033 196 11 3405 Thr4 ThrTGT_ii 3_flank no 272 29.182862 298.12997 163.656416 2.213933036 -0.080143 196 12 169 Arg2 ArgACG_ii 5_flank no 273 35.458633 291.49942 163.4790265 2.213462043 0.13737 196 13 5064 snR11 5_flank no 458 41.835584 324.566073 183.2008285 2.262927433 -0.118703 196 14 16351 YDR500C intron no 439 301 319 34.009016 300.997293 167.5031545 2.22402299 0.040848 196 15 5568 snR33 snR33 yes 383 126 142 36.313095 295.916368 166.1147315 2.220408149 0.110064 196 16 16895 YGL226C intron no 249 61 77 34.507496 295.647276 165.077386 2.217687583 0.091194 196 17 19666 SIR1 2.4 SIR1 2.4 yes 401 41 62 32.663876 300.063896 166.363886 2.221059056 0.026915 196 18 4938 snR9 snR9 yes 387 96 113 32.858 316.048045 174.4530225 2.241678498 -0.093992 196 19 18901 YOL120C intron no 547 221 237 33.008922 273.024359 153.0166405 2.184738663 0.211757 196 20 15548 YBR078W intron no 430 321 342 31.007262 338.93985 184.973556 2.267109646 -0.290812 196 21 15238 MT_fMet 5_flank no 274 1 29 38.449844 308.728175 173.5890095 2.239522225 0.009826 196 22 16653 YFR031C intron/exon no 247 181 201 33.236122 309.446204 171.341163 2.23386171 -0.037084 196 23 20547 YGR225W spliced yes 40 1 15 39.704393 293.308355 166.506374 2.221430863 0.155917 196 24 7234 snR65 5_flank no 300 48.491518 590.266812 319.379165 2.504306581 -1.574582 196 25 9764 RUF4 RUF4 yes 988 596 617 31.687997 338.035804 184.8619005 2.266847414 -0.27522 196 26 10453 RUF8 RUF8 yes 1151 191 210 36.43238 314.626097 175.5292385 2.244349469 -0.04797 196 27 18537 YMR230W intron no 510 121 142 30.347468 311.034907 170.6911875 2.2322111 -0.116011 196 28 16460 YER093C 5_exon no 175 1 16 47.673189 277.491349 162.582269 2.21107318 0.329721 196 29 12648 MT_15S 15S yes 1848 1471 1490 31.278426 319.870837 175.5746315 2.244461766 -0.144104 196 30 14254 MT_VAR1 5_flank no 1467 16 37 33.969598 304.132425 169.0510115 2.228017774 0.01476 196 31 6920 snR58 5_flank no 296 34.278707 302.088796 168.1837515 2.225784036 0.035173 196 32 3247 Thr1 ThrAGT 3_flank no 273 32.128534 295.659266 163.8939 2.21456279 0.036886 196 33 18645 YNL112W intron no 1102 81 102 35.702109 314.315336 175.0087225 2.243059695 -0.047057 196 34 16673 YFR032C intron no 431 341 357 34.515051 307.416306 170.9656785 2.232908934 -0.005185 196 35 15115 MT_COX 2; ORF1 orf3/3_flank no 2427 2326 2348 34.452177 299.349929 166.901053 2.222459077 0.059772 196 36 13476 MT_COX1 intronic no 13084 11341 11367 32.047449 324.690742 178.3690955 2.25131961 -0.171008 196 37 6128 snR39B 5_flank no 296 34.300863 343.932493 189.116678 2.276729831 -0.302317 196 38 5974 snR36 snR36 yes 555 326 343 31.899731 305.566515 168.733123 2.227200345 -0.031262 196 39 5938 snR36 snR36 yes 555 146 162 34.101446 291.516566 162.809006 2.211678425 0.121066 196 40 4052 SRP SRP yes 875 151 167 33.926244 315.576128 174.751186 2.242420132 -0.077051 196 41 97 Ala2 AlaTGC 3_flank no 273 33.684165 309.033757 171.358961 2.23390682 -0.028244 196 42 2451 Phe5 PheGAA_v tRNA/intron no 291 26 i5 36.794017 325.235391 181.014704 2.257713854 -0.139732 196 43 3344 Thr3 ThrTGT_i tRNA/3_flank no 272 30.860013 317.708063 174.284038 2.241257614 -0.137606 196 44 20803 YKL180W spliced yes 40 5 17 33.972462 267.85869 150.915576 2.178734066 0.276971 196 45 5067 snR11 5_flank no 458 30.478399 309.789322 170.1338605 2.230790757 -0.104127 196 46 15992 YDL136W intron no 505 421 439 32.611953 299.087965 165.849959 2.219715368 0.031251 196 47 10110 RUF6 RUF6 yes 1251 396 413 30.368666 277.286761 153.8277135 2.187034585 0.078256 196 48 15408 YBL059C intron no 185 61 82 34.742449 290.437201 162.589825 2.211093364 0.137944 196 49 3300 Thr2 ThrCGT 3_flank no 272 30.237419 303.411497 166.824458 2.222259723 -0.074115 196 50 17354 YIL018W 3_exon no 500 481 497 34.457685 285.489453 159.973569 2.204048234 0.174414 196 51 10240 RUF6 RUF6/3_flank no 1251 32.051744 291.176592 161.614168 2.208479431 0.062516 196 52 20396 YFR024C-A spliced yes 40 1 18 38.333585 306.251937 172.292761 2.236267031 0.03205 196 53 9059 snR14 / U4 RNA 5_flank no 360 29.543423 317.20786 173.3756415 2.238988081 -0.180233 196 54 15768 YCR097W exon/intron no 154 41 62 31.640732 300.067031 165.8538815 2.21972564 -0.006336 196 55 137 Arg1 ArgACG_i tRNA yes 273 61 73 9957.893695 12305.86966 11131.88168 4.046568581 -0.750765 196 56 6718 snR49 snR49 yes 365 116 135 33.96749 317.25488 175.611185 2.244552173 -0.08966 196 57 19588 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 61 77 31.957285 336.212276 184.0847805 2.265017884 -0.258348 196 58 14315 MT_VAR1 VAR1 yes 1467 931 957 29.925877 289.97433 159.9501035 2.203984525 -0.004143 196 59 3278 Thr2 ThrCGT 5_flank/tRNA no 272 50.886996 323.227117 187.0570565 2.271974096 -0.064681 196 60 21021 YMR079W spliced yes 40 5 22 36.734769 309.81492 173.2748445 2.238735518 -0.004159 196 61 19639 RNA14 2.2 RNA14 2.2 yes 401 281 298 36.870809 307.745256 172.3080325 2.236305523 0.014907 196 62 13394 MT_COX1 intronic no 13084 10111 10136 32.608024 311.159998 171.884011 2.23523548 -0.058633 196 63 3464 Trp1 TrpCCA 3_flank no 306 33.896118 318.851254 176.373686 2.246433791 -0.102935 196 64 8741 LSR1 / U2 RNA U2 yes 1375 346 362 35.227057 301.775956 168.5015065 2.226603788 0.049034 196 65 19052 YOR234C intron no 627 421 437 33.205979 300.578087 166.892033 2.222435605 0.034398 196 66 10256 RUF6 3_flank no 1251 31.143244 324.993975 178.0686095 2.250587367 -0.185165 196 67 9691 RUF4 RUF4 yes 988 231 250 32.424134 316.216053 174.3200935 2.24134745 -0.100809 196 68 7951 snoRNA cluster1 3_flank no 1574 1551 1567 33.646103 325.022483 179.334293 2.253663345 -0.153375 196 69 9709 RUF4 RUF4 yes 988 321 337 35.931818 301.939883 168.9358505 2.227721823 0.055894 196 70 298 Arg4 ArgCCT 3_flank no 272 33.574417 298.748573 166.161495 2.220530391 0.054055 196 71 10265 RUF7 5_flank no 700 114.937982 344.055426 229.496704 2.360776453 0.180477 196 72 12218 5S rRNA NTS2 no 1420 46 58 60.538013 337.587697 199.062855 2.298990229 -0.119312 196 73 2360 Phe3 PheGAA_iii 3_flank no 291 35.391296 300.136129 167.7637125 2.224698028 0.064425 196 74 4397 telomerase RNA telomerase yes 1501 1021 1040 30.791055 311.840904 171.3159795 2.233797874 -0.105623 196 75 8460 snoRNA cluster 5 snR128 yes 586 466 482 32.976306 306.845201 169.9107535 2.230220866 -0.019474 196 76 10393 RUF7 3_flank no 700 85.884261 313.054394 199.4693275 2.299876123 0.221514 196 77 936 Gly1 GlyCCC_i 5_flank no 272 33.075582 263.600372 148.337977 2.171252352 0.278327 196 78 11814 "rRNA(18S,5.8S,25S)" 25S yes 7956 5956 5973 1257.681842 1072.220291 1164.951067 3.066307683 0.647924 196 79 2231 Phe1 PheGAA_i tRNA/intron no 292 31 i12 31.08764 293.805401 162.4465205 2.210710413 0.014076 196 80 6149 snR39B snR39B/3_flank no 296 33.464114 289.207669 161.3358915 2.207730993 0.120037 196 81 4645 snR3 snR3 yes 395 141 158 31.247607 270.391683 150.819645 2.178457914 0.156118 196 82 7570 snR189 5_flank no 389 31.229669 265.006079 148.117874 2.17060747 0.182016 196 83 12963 MT_COX1 ai2 no 13084 3646 3665 33.408441 305.006276 169.2073585 2.228419246 0.000773 196 84 13165 MT_COX1 intronic no 13084 6676 6698 33.260978 279.943663 156.6023205 2.194798193 0.173621 196 85 6667 snR48 3_flank no 313 37.566628 285.363879 161.4652535 2.208079079 0.213854 196 86 11016 "rRNA(18S,5.8S,25S)" 18S yes 7956 1966 1984 42.922565 321.248392 182.0854785 2.260275312 -0.086868 196 87 2560 Pro2 ProTGG_i tRNA/intron no 303 37 i16 34.867307 302.88759 168.8774485 2.227571659 0.035697 196 88 4663 snR3 3_flank no 395 36.813768 311.399403 174.1065855 2.240815198 -0.018216 196 89 8542 snR19 / U1 RNA U1 yes 868 206 223 34.332744 307.056772 170.694758 2.232220184 -0.004486 196 90 11294 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3356 3369 44.857909 295.304735 170.081322 2.230656623 0.15039 196 91 1667 Leu6 LeuGAG 5_flank no 282 33.685303 314.303713 173.994508 2.24053554 -0.070018 196 92 16607 YFL034C intron no 214 81 93 39.705827 289.452452 164.5791395 2.216374787 0.192896 196 93 10098 RUF6 RUF6 yes 1251 336 353 30.910426 318.436533 174.6734795 2.242226971 -0.140118 196 94 8622 snR19 / U1 RNA U1 yes 868 606 624 34.793668 343.373156 189.083412 2.276653431 -0.296467 196 95 227 Arg3 ArgCCG 5_flank/tRNA no 272 36.604634 307.951852 172.278243 2.236230434 0.01237 196 96 4071 SRP SRP yes 875 246 262 54.98011 297.87553 176.42782 2.246567068 0.169716 196 97 11180 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2786 2799 32.151243 262.265163 147.208203 2.167932011 0.241049 196 98 1692 Leu6 LeuGAG tRNA yes 282 26 38 246.852967 335.519697 291.186332 2.464170986 0.841299 196 99 2365 Phe3 PheGAA_iii 3_flank no 291 54.497197 290.229987 172.363592 2.236445536 0.235748 196 100 10222 RUF6 RUF6 yes 1251 956 970 50.335611 311.675177 181.005394 2.257691517 0.028053 196 101 14255 MT_VAR1 5_flank no 1467 31 57 29.881641 319.871797 174.876719 2.242731997 -0.183744 196 102 4458 telomerase RNA 3_flank no 1501 31.893011 326.742792 179.3179015 2.253623648 -0.188578 196 103 12514 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 106 134 33.914926 327.768049 180.8414875 2.257298071 -0.170868 196 104 14684 MT_21S 21S_rRNA4 yes 4639 4471 4497 31.840738 305.249392 168.545065 2.226716041 -0.031283 197 2 5832 snR35 snR35 yes 740 346 363 32.394185 317.001221 174.697703 2.242287195 -0.10732 197 3 7930 snoRNA cluster1 snR72 yes 1574 1446 1462 32.270347 313.577937 172.924142 2.23785563 -0.082073 197 4 12334 5S rRNA NTS2 no 1420 626 645 30.226337 319.355814 174.7910755 2.242519255 -0.168795 197 5 2637 Pro3 ProTGG_ii 3_flank no 303 32.086727 279.311699 155.699213 2.192286417 0.14025 197 6 5622 snR34 snR34 yes 750 31 46 41.720577 284.808799 163.264688 2.212892263 0.242604 197 7 12381 5S rRNA NTS2 no 1420 861 873 39.879941 286.943316 163.4116285 2.213282958 0.217622 197 8 12257 5S rRNA NTS2 no 1420 241 253 152.414585 488.910642 320.6626135 2.506048328 -0.338586 197 9 4123 SRP SRP yes 875 506 518 363.040097 702.813657 532.926877 2.726667623 -0.146873 197 10 935 Gly1 GlyCCC_i 5_flank no 272 30.973928 296.850663 163.9122955 2.214611532 -0.008736 197 11 4949 snR9 snR9 yes 387 151 163 70.459493 337.081231 203.770362 2.309141017 -0.052599 197 12 16787 YGL103W intron no 611 421 437 31.655502 310.165216 170.910359 2.232768386 -0.06679 197 13 5806 snR35 snR35 yes 740 216 233 31.964792 307.272975 169.6188835 2.2294742 -0.039388 197 14 20673 YIL106W spliced yes 40 1 22 32.239174 292.219152 162.229163 2.210128928 0.062024 197 15 3723 Val3 ValCAC 3_flank no 273 32.482358 291.078707 161.7805325 2.208926261 0.07707 197 16 4440 telomerase RNA telomerase yes 1501 1236 1253 34.779545 321.375828 178.0776865 2.250609505 -0.111772 197 17 13992 MT_COB intronic no 7308 4066 4087 33.93569 287.073961 160.5048255 2.205488094 0.148283 197 18 9421 RUF2 5_flank no 468 30.945798 286.815906 158.880852 2.20107156 0.05363 197 19 16805 YGL137W intron no 300 181 202 35.26303 306.437949 170.8504895 2.232616227 0.01157 197 20 1369 Leu1 LeuCAA_i 5_flank no 315 41.681756 278.608558 160.145157 2.20451381 0.304017 197 21 6524 snR46 snR46 yes 397 111 128 31.153451 297.608281 164.380866 2.215851264 -0.007394 197 22 4332 telomerase RNA telomerase yes 1501 696 712 50.321034 317.629527 183.9752805 2.264759474 -0.021974 197 23 12133 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7551 7564 44.089353 307.531344 175.8103485 2.245044435 0.036649 197 24 8554 snR19 / U1 RNA U1 yes 868 266 282 33.656426 278.268971 155.9626985 2.193020741 0.19701 197 25 500 Asp2 AspGTC_ii tRNA/3_flank no 272 62 74 49.146691 293.596916 171.3718035 2.233939367 0.17992 197 26 16733 YGL076C intron no 559 81 99 32.231078 309.733864 170.982471 2.232951589 -0.052095 197 27 18311 YML073C intron no 515 421 440 30.486014 291.403093 160.9445535 2.206676284 0.008786 197 28 12449 5S rRNA NTS2 no 1420 1201 1213 46.727422 298.474925 172.6011735 2.237043744 0.126916 197 29 7151 snR63 3_flank no 455 33.652826 286.850785 160.2518055 2.204802931 0.140975 197 30 9958 RUF5-1 RUF5-1 yes 975 596 610 40.977908 303.276502 172.127205 2.235849517 0.06542 197 31 5522 snR32 3_flank no 388 32.013909 303.463499 167.738704 2.224633283 -0.014816 197 32 5203 snR13 3_flank no 324 32.186369 291.466361 161.826365 2.209049279 0.065061 197 33 21242 YOR312C spliced yes 40 13 31 32.263589 304.805516 168.5345525 2.226688952 -0.014828 197 34 1782 Leu8 LeuTAG_i 5_flank no 301 32.267868 329.013208 180.640538 2.256815218 -0.200852 197 35 11980 "rRNA(18S,5.8S,25S)" 25S yes 7956 6786 6803 34.57089 298.536634 166.553762 2.221554447 0.067919 197 36 10374 RUF7 RUF7 yes 700 481 495 41.539891 282.600649 162.07027 2.209703356 0.263955 197 37 18705 YNL130C intron no 541 181 198 34.448856 289.364436 161.906646 2.209264676 0.143575 197 38 2722 Pro5 ProTGG_iv 5_flank/tRNA no 303 53.079938 310.873578 181.976758 2.260015924 0.048716 197 39 14024 MT_COB exon4 yes 7308 4546 4563 31.93689 306.085279 169.0110845 2.227915189 -0.03317 197 40 7214 snR64 3_flank no 301 31.769354 315.046597 173.4079755 2.239069068 -0.100099 197 41 20257 YDR381W spliced yes 40 21 39 31.531173 322.616027 177.0736 2.248153817 -0.16189 197 42 14572 MT_21S 21S_rRNA3 yes 4639 2791 2808 35.78081 309.993545 172.8871775 2.237762784 -0.010904 197 43 12025 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 7011 7031 30.927076 280.782481 155.8547785 2.192720122 0.089884 197 44 17619 YJR021C 3_exon no 180 161 177 37.336872 341.664836 189.500854 2.277611171 -0.275733 197 45 12359 5S rRNA NTS2 no 1420 751 770 30.426693 288.77206 159.5993765 2.20303119 0.023451 197 46 10720 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 486 504 32.474742 307.09697 169.785856 2.229901509 -0.027847 197 47 2802 Pro6 ProTGG_v tRNA/3_flank no 302 32.351573 340.776211 186.563892 2.270827593 -0.286593 197 48 21476 copy of SH1443 no 314 31.129432 313.731548 172.43049 2.236614062 -0.105339 197 49 12169 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7731 7749 32.047805 304.809724 168.4287645 2.226416263 -0.021861 197 50 1519 Leu3 LeuCAA_iii intron/tRNA no 314 i28 e2 33.982477 285.004899 159.493688 2.2027435 0.16304 197 51 11722 "rRNA(18S,5.8S,25S)" 25S yes 7956 5496 5513 33.719709 283.17466 158.4471845 2.199884526 0.166796 197 52 7485 snR71 snR71 yes 290 41 62 29.236134 303.04164 166.138887 2.220471297 -0.107033 197 53 20472 YGL187C spliced yes 40 21 38 40.796548 288.790527 164.7935375 2.216940177 0.201767 197 54 2711 Pro5 ProTGG_iv 5_flank no 303 58.938569 275.070984 167.0047765 2.222728893 0.3966 197 55 2780 Pro6 ProTGG_v 5_flank/tRNA no 302 63.424788 312.40372 187.914254 2.273959724 0.093345 197 56 10239 RUF6 RUF6/3_flank no 1251 31.491147 294.138466 162.8148065 2.211693897 0.025456 197 57 4604 snR3 5_flank no 395 31.691682 300.566806 166.129244 2.220446089 -0.00772 197 58 1311 Ile3 IleTAT_ii 5_flank no 333 31.884819 297.538261 164.71154 2.216724028 0.01727 197 59 15774 YDL012C 5_exon no 186 21 37 34.233473 289.33759 161.7855315 2.20893968 0.141207 197 60 10924 "rRNA(18S,5.8S,25S)" 18S yes 7956 1506 1524 718.550274 2039.84093 1379.195602 3.139625864 -1.100323 197 61 14793 MT_Lys; Arg1; Gly 5_flank no 682 76 100 30.192086 306.572083 168.3820845 2.226295882 -0.094762 197 62 19610 RNA14 1.1 RNA14 1.1 yes 401 101 119 32.57765 301.071002 166.824326 2.222259379 0.017985 197 63 5144 snR11 3_flank no 458 55.130462 309.929404 182.529933 2.261334094 0.067838 197 64 1931 Lys1 LysCTT_i 3_flank no 272 33.03401 295.412304 164.223157 2.215434397 0.067446 197 65 6256 snR42 snR42 yes 551 61 81 31.017164 306.949314 168.983239 2.22784363 -0.068873 197 66 11263 "rRNA(18S,5.8S,25S)" 5.8S/ITS2 no 7956 3201 3217 35.751048 284.076924 159.913986 2.203886449 0.204514 197 67 11003 "rRNA(18S,5.8S,25S)" 18S yes 7956 1901 1919 793.340247 2265.595344 1529.467796 3.184540337 -1.138561 197 68 20138 YDL108W spliced yes 40 1 18 34.858184 314.296418 174.577301 2.241987775 -0.055789 197 69 11049 "rRNA(18S,5.8S,25S)" 18S yes 7956 2131 2148 32.568066 281.881067 157.2245665 2.196520406 0.138939 197 70 1611 Leu5 LeuCAA_v 5_flank no 315 33.628478 287.856891 160.7426845 2.206131217 0.133773 197 71 320 Arg5 ArgTCT 5_flank no 272 40.311684 267.992276 154.15198 2.187949107 0.398273 197 72 10521 RUF8 RUF8 yes 1151 531 551 31.054928 346.546902 188.800915 2.276004095 -0.345029 197 73 9938 RUF5-1 RUF5-1 yes 975 496 512 33.137675 304.173145 168.65541 2.227000277 0.004163 197 74 5286 snR30 snR30 yes 801 281 295 32.990788 312.089628 172.540208 2.236890317 -0.061173 197 75 8898 LSR1 / U2 RNA U2 yes 1375 1131 1147 32.898935 292.511114 162.7050245 2.211400965 0.081339 197 76 11255 "rRNA(18S,5.8S,25S)" 5.8S yes 7956 3161 3174 55.297181 279.392562 167.3448715 2.223612407 0.339786 197 77 7866 snoRNA cluster1 intergenic/snR73 no 1574 1126 1145 32.936472 290.337702 161.637087 2.208541015 0.096261 197 78 12604 MT_15S 15S yes 1848 811 835 30.810591 308.738239 169.774415 2.229872243 -0.08655 197 79 6696 snR49 snR49 yes 365 6 22 43.34926 268.863927 156.1065935 2.193421247 0.407075 197 80 7302 snR66 snR66 yes 286 1 20 35.571381 286.17148 160.8714305 2.206478924 0.184273 197 81 21215 YOR122C spliced yes 40 5 21 31.10938 261.650763 146.3800715 2.165481955 0.192988 197 82 8472 snoRNA cluster 5 3_flank no 586 526 543 35.61707 272.8483 154.232685 2.188176419 0.292355 197 83 2928 Pro8 ProTGG_vii 3_flank no 305 35.513455 343.386134 189.4497945 2.277494139 -0.294703 197 84 7729 snoRNA cluster1 intergenic no 1574 441 458 33.097799 284.789084 158.9434415 2.201242612 0.13689 197 85 16484 YER102W intron no 460 321 340 35.129796 307.666776 171.398286 2.234006475 0.000112 197 86 10069 RUF6 RUF6 yes 1251 191 208 43.782104 353.920957 198.8515305 2.298528938 -0.341754 197 87 5074 snR11 5_flank no 458 39.05473 283.135196 161.094963 2.207081961 0.249317 197 88 15848 YDL075W intron no 521 401 420 36.572743 323.669587 180.121165 2.255564747 -0.126798 197 89 19416 YPR132W exon/intron no 465 41 58 36.276219 338.83782 187.5570195 2.273133323 -0.255506 197 90 1922 Lys1 LysCTT_i tRNA/3_flank no 272 33.805486 273.393797 153.5996415 2.186390202 0.234167 197 91 5020 snR10 snR10 yes 445 131 149 31.357553 304.172915 167.765234 2.224701967 -0.040746 197 92 20658 YIL018W spliced yes 40 17 33 33.160243 306.236502 169.6983725 2.229677677 -0.012263 197 93 9208 snR6 / U6 RNA 5_flank no 312 32.853476 276.816189 154.8348325 2.189868669 0.181433 197 94 20804 YKL180W spliced yes 40 9 21 36.734686 300.093732 168.414209 2.22637873 0.0802 197 95 5943 snR36 snR36 yes 555 171 186 32.375336 300.06134 166.218338 2.220678936 0.017665 197 96 8304 snoRNA cluster4 intergenic no 638 306 320 38.378979 276.347299 157.363139 2.19690301 0.302059 197 97 19517 ACT1 ACT1 yes 401 241 260 31.102637 290.442638 160.7726375 2.206212136 0.035774 197 98 18082 YLR344W intron no 547 401 420 32.065405 305.321422 168.6934135 2.227098126 -0.024375 197 99 10053 RUF6 RUF6 yes 1251 111 127 34.07402 306.887399 170.4807095 2.231675244 -0.006255 197 100 168 Arg2 ArgACG_ii 5_flank no 273 40.191059 320.127236 180.1591475 2.255656318 -0.086642 197 101 20832 YKR095W-A spliced yes 40 1 17 34.051454 267.270084 150.660769 2.17800018 0.283446 197 102 9009 snR17a / U3a U3a yes 690 331 353 31.996419 324.066336 178.0313775 2.250496552 -0.16691 197 103 17057 YGR214W intron no 555 281 302 31.971295 314.524572 173.2479335 2.238668063 -0.093377 197 104 5652 snR34 snR34 yes 750 181 198 42.251949 277.21012 159.7310345 2.203389304 0.319318 198 2 12947 MT_COX1 ai2 no 13084 3406 3427 30.491621 349.046574 189.7690975 2.278225492 -0.37037 198 3 2600 Pro3 ProTGG_ii 5_flank no 303 30.377186 315.473779 172.9254825 2.237858996 -0.141079 198 4 10176 RUF6 RUF6 yes 1251 726 745 30.268547 314.37253 172.3205385 2.236337043 -0.138381 198 5 8045 snoRNA cluster 2 intergenic no 739 461 480 30.191954 287.24899 158.720472 2.200632946 0.022186 198 6 19724 Negative Control no 60 NA #VALUE! 37.884722 305.14504 171.514881 2.234301806 0.041092 198 7 8681 LSR1 / U2 RNA U2 yes 1375 46 63 30.251563 287.821848 159.0367055 2.201497371 0.022597 198 8 5485 snR32 snR32 yes 388 86 103 38.191233 298.121547 168.15639 2.225713375 0.106891 198 9 15189 MT_COX3 cox3 no 1010 256 278 31.685504 294.780119 163.2328115 2.212807461 0.027869 198 10 7061 snR62 snR62/3_flank no 300 33.036339 305.534781 169.28556 2.228619915 -0.008144 198 11 6377 snR43 snR43 yes 409 126 141 35.447776 283.252786 159.350281 2.202352834 0.208167 198 12 1288 Ile2 IleTAT_i 3_flank no 333 29.800652 280.689201 155.2449265 2.191017416 0.032679 198 13 16975 YGR034W intron no 454 281 297 32.164072 299.276737 165.7204045 2.219375985 0.015649 198 14 12881 MT_COX1 ai1 no 13084 2416 2437 32.456191 307.455444 169.9558175 2.230336035 -0.030966 198 15 10818 "rRNA(18S,5.8S,25S)" 18S yes 7956 976 991 13246.82699 10926.01495 12086.42097 4.082297717 -0.204433 198 16 1132 Gly4 GlyTCC 3_flank no 272 32.901838 316.977319 174.9395785 2.242888076 -0.100695 198 17 17394 YIL069C intron no 509 221 237 35.168499 305.984839 170.576669 2.231919629 0.014115 198 18 12340 5S rRNA NTS2 no 1420 656 673 43.762123 321.897932 182.8300275 2.262047525 -0.089649 198 19 12143 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7601 7618 33.272324 331.253426 182.262875 2.260698217 -0.20493 198 20 3414 Trp1 TrpCCA 5_flank no 306 31.205618 293.900074 162.552846 2.210994578 0.017438 198 21 14161 MT_COB intronic no 7308 6601 6625 31.243766 315.46438 173.354073 2.23893405 -0.111652 198 22 3432 Trp1 TrpCCA 5_flank/tRNA no 306 37.684623 311.947062 174.8158425 2.242580788 -0.020991 198 23 15941 YDL125C 5_exon no 211 1 13 39.982025 299.64987 169.8159475 2.229978473 0.096787 198 24 6802 snR52 5_flank no 292 33.816525 300.606887 167.211706 2.223266678 0.041705 198 25 19678 SIR1 2.4 SIR1 2.4 yes 401 281 297 38.513394 298.417521 168.4654575 2.226510866 0.104885 198 26 11682 "rRNA(18S,5.8S,25S)" 25S yes 7956 5296 5311 3450.054551 3645.926884 3547.990718 3.549982475 -0.018556 198 27 7446 snR69 3_flank no 301 30.640519 306.882569 168.761544 2.22727349 -0.08123 198 28 18597 YNL069C intron no 549 101 116 35.585569 308.475801 172.030685 2.235605919 -0.00104 198 29 18257 YML056C 5_exon no 508 21 37 33.747076 294.277944 164.01251 2.214876975 0.093441 198 30 5890 snR36 5_flank no 555 30.636796 327.105236 178.871016 2.252539974 -0.207956 198 31 1849 Leu9 LeuTAG_ii 5_flank/tRNA no 301 39.028901 307.157403 173.093152 2.238279886 0.025443 198 32 15367 YBL027W intron no 484 101 122 32.199671 307.330688 169.7651795 2.229848617 -0.033249 198 33 10133 RUF6 RUF6 yes 1251 511 527 32.27929 294.995428 163.637359 2.213882462 0.045912 198 34 686 Gln3 GlnTTG_ii 5_flank no 272 32.295054 308.462917 170.3789855 2.231416028 -0.041112 198 35 14546 MT_21S 21S_rRNA3 yes 4639 2401 2420 32.271335 311.535086 171.9032105 2.235283988 -0.065908 198 36 16247 YDR381W 3_exon no 866 841 858 34.571882 351.567005 193.0694435 2.285713545 -0.362942 198 37 20361 YER131W spliced yes 40 9 25 43.896765 315.030417 179.463591 2.253976354 -0.030059 198 38 21542 copy of SH4152 no 875 34.451886 294.276835 164.3643605 2.215807654 0.102009 198 39 18729 YNL147W intron no 220 121 140 32.016638 304.786055 168.4013465 2.22634556 -0.022734 198 40 5812 snR35 snR35 yes 740 246 263 31.850973 314.074169 172.962571 2.237952132 -0.091397 198 41 16475 YER102W intron no 460 141 159 31.608076 296.378638 163.993357 2.214826256 0.015357 198 42 1134 Gly4 GlyTCC 3_flank no 272 663.100753 1823.54472 1243.322737 3.094583876 -1.024071 198 43 11986 "rRNA(18S,5.8S,25S)" 25S yes 7956 6816 6833 33.207742 286.648811 159.9282765 2.203925257 0.128369 198 44 4910 snR9 5_flank no 387 66.501103 309.997282 188.2491925 2.274733122 0.129802 198 45 3006 Ser2 SerAGA_ii 5_flank/tRNA no 282 30.346487 285.040702 157.6935945 2.197814053 0.040395 198 46 16597 YFL034C intron no 421 301 317 36.699359 285.85219 161.2757745 2.207569136 0.199958 198 47 19503 YPT1 YPT1 yes 402 361 382 34.286239 300.207659 167.246949 2.223358204 0.050702 198 48 14600 MT_21S Sce1 no 4639 3211 3228 36.238089 315.622036 175.9300625 2.245340057 -0.057289 198 49 2931 Pro8 ProTGG_vii 3_flank no 305 86.742085 333.509083 210.125584 2.322478933 0.078452 198 50 6251 snR42 snR42 yes 551 36 52 36.751645 327.711145 182.231395 2.2606232 -0.161025 198 51 2916 Pro8 ProTGG_vii tRNA/3_flank no 305 63.094008 313.456169 188.2750885 2.27479286 0.082975 198 52 16755 YGL076C 3_exon no 559 521 535 64.819029 329.135454 196.9772415 2.294416051 -0.02928 198 53 12611 MT_15S 15S yes 1848 916 933 41.360169 326.7218 184.0409845 2.264914548 -0.138489 198 54 14817 MT_Lys; Arg1; Gly intergenic no 682 436 448 96.997784 356.158218 226.578001 2.355217741 -0.007394 198 55 13406 MT_COX1 intronic no 13084 10291 10317 37.340135 306.39849 171.8693125 2.23519834 0.028316 198 56 13084 MT_COX1 ai3 no 13084 5461 5483 31.219177 327.676672 179.4479245 2.25393844 -0.204473 198 57 12600 MT_15S 15S yes 1848 751 763 6562.455046 3712.183862 5137.319454 3.710736572 0.738292 198 58 15485 YBL092W intron no 433 81 96 33.820874 290.316333 162.0686035 2.20969889 0.124066 198 59 21718 copy of SH11503 no 7956 24328.03049 15448.81725 19888.42387 4.298600367 -0.037551 198 60 17811 YKR057W intron no 422 81 99 38.602265 329.101776 183.8520205 2.264468407 -0.168226 198 61 14221 MT_ATP9 ATP9 yes 431 211 228 41.042352 314.465971 177.7541615 2.249819777 -0.034716 198 62 12220 5S rRNA NTS2 no 1420 56 71 41.329826 307.489079 174.4094525 2.241570019 0.027821 198 63 8127 snoRNA cluster 3; snR41 yes 743 146 160 37.195485 295.413419 166.304452 2.220903876 0.124209 198 64 1912 Lys1 LysCTT_i tRNA yes 272 16 28 35.254096 287.406881 161.3304885 2.207716449 0.169917 198 65 10136 RUF6 RUF6 yes 1251 526 538 35.52577 265.684906 150.605338 2.177840365 0.338659 198 66 18813 YNL302C intron no 651 81 100 33.488064 333.282623 183.3853435 2.263364623 -0.217346 198 67 15613 YBR181C exon/intron no 452 41 58 33.645925 295.639109 164.642517 2.216541997 0.080793 198 68 19759 Negative Control no 60 NA #VALUE! 37.158575 304.488023 170.823299 2.232547105 0.045347 198 69 16823 YGL178W intron no 740 241 258 31.43752 309.297639 170.3675795 2.231386953 -0.068848 198 70 1716 Leu6 LeuGAG 3_flank no 282 31.361129 291.214697 161.287913 2.207601822 0.039529 198 71 7059 snR62 snR62/3_flank no 300 31.227102 310.127422 170.677262 2.232175667 -0.080794 198 72 4825 snR8 5_flank no 390 33.316028 298.557509 165.9367685 2.219942628 0.052437 198 73 8938 snR17a / U3a 5_flank no 690 33.125188 309.349824 171.237506 2.233598894 -0.037699 198 74 16575 YER179W exon/intron no 192 41 58 32.956034 301.468674 167.212354 2.223268361 0.023958 198 75 17631 YJR094W intron no 375 221 235 35.067392 272.336692 153.702042 2.186679637 0.279569 198 76 3228 Thr1 ThrAGT 5_flank/tRNA no 273 35.020431 274.352617 154.686524 2.18945248 0.264591 198 77 1414 Leu1 LeuCAA_i 3_flank no 315 43.999415 345.033983 194.516699 2.288956891 -0.273407 198 78 7144 snR63 snR63 yes 455 226 244 35.170864 311.777678 173.474271 2.239235071 -0.032206 198 79 9745 RUF4 RUF4 yes 988 501 515 46.578376 332.865382 189.721879 2.278117417 -0.164636 198 80 14418 MT_21S 21S_rRNA3 yes 4639 481 498 37.705669 298.775045 168.240357 2.225930181 0.099604 198 81 12673 MT_Trp 5_flank no 274 16 44 33.266067 277.126134 155.1961005 2.190880805 0.192405 198 82 16614 YFL039C 5_exon no 408 21 42 35.512818 344.031962 189.77239 2.278233027 -0.299954 198 83 10217 RUF6 RUF6 yes 1251 931 950 33.163516 313.869809 173.5166625 2.239341186 -0.073068 198 84 16544 YER133W exon/intron no 625 41 60 37.483991 358.815981 198.149986 2.296994046 -0.409522 198 85 12584 MT_15S 15S yes 1848 511 537 35.025009 310.444759 172.734884 2.237380053 -0.023339 198 86 11406 "rRNA(18S,5.8S,25S)" 25S yes 7956 3916 3933 36.99468 323.262008 180.128344 2.255582056 -0.12223 198 87 6555 snR46 3_flank no 397 36.72321 360.372572 198.547891 2.297865278 -0.424316 198 88 11143 "rRNA(18S,5.8S,25S)" 18S yes 7956 2601 2617 939.429385 1286.427917 1112.928651 3.046467323 -0.018041 198 89 18552 YMR230W intron no 510 421 438 36.132894 334.410005 185.2714495 2.267808499 -0.219115 198 90 19143 YPL075W intron no 851 381 402 35.803433 375.965902 205.8846675 2.313624005 -0.544121 198 91 8871 LSR1 / U2 RNA U2 yes 1375 996 1012 35.455387 298.93142 167.1934035 2.223219139 0.075114 198 92 10151 RUF6 RUF6 yes 1251 601 623 35.106369 324.692175 179.899272 2.255029406 -0.139348 198 93 11761 "rRNA(18S,5.8S,25S)" 25S yes 7956 5691 5708 164.751344 480.477638 322.614491 2.508683871 -0.235209 198 94 19447 CYC1 CYC1 yes 400 41 58 36.573664 302.008581 169.2911225 2.228634185 0.062662 198 95 19395 YPR043W 3_exon no 503 481 495 38.410115 303.732689 171.071402 2.233177415 0.055312 198 96 10910 "rRNA(18S,5.8S,25S)" 18S yes 7956 1436 1451 29606.65081 5798.255279 17702.45305 4.248033451 1.832087 198 97 7501 snR71 3_flank no 290 32.056339 285.404355 158.730347 2.200659966 0.099531 198 98 3607 Val1 ValAAC_i tRNA yes 274 30 45 38.15508 271.561904 154.858492 2.189935026 0.342806 198 99 1505 Leu3 LeuCAA_iii 5_flank/tRNA no 314 39.184637 316.253757 177.719197 2.249734342 -0.055738 198 100 254 Arg3 ArgCCG 3_flank no 272 38.182598 310.894269 174.5384335 2.241891074 -0.010346 198 101 10629 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 31 51 32.061602 314.661443 173.3615225 2.238952712 -0.093285 198 102 4325 telomerase RNA telomerase yes 1501 661 678 34.103173 304.122695 169.112934 2.228176824 0.016464 198 103 1717 Leu6 LeuGAG 3_flank no 282 34.080608 299.782652 166.93163 2.222538634 0.051712 198 104 2642 Pro3 ProTGG_ii 3_flank no 303 38.165746 325.609144 181.887445 2.259802722 -0.139599 199 2 11505 "rRNA(18S,5.8S,25S)" 25S yes 7956 4411 4428 99.771607 382.753111 241.262359 2.38248957 -0.15061 199 3 4956 snR9 snR9/3_flank no 387 28.487887 299.030731 163.759309 2.214205997 -0.12161 199 4 13360 MT_COX1 intronic no 13084 9601 9615 51.785948 307.305428 179.545688 2.254174979 0.072302 199 5 21052 YMR143W spliced yes 40 9 26 32.168182 283.250699 157.7094405 2.197857691 0.117114 199 6 19515 ACT1 ACT1 yes 401 201 218 34.071326 288.339673 161.2054995 2.207379854 0.144349 199 7 3868 RNaseP RNaseP yes 569 306 322 38.017875 286.791443 162.404659 2.210598484 0.206466 199 8 11612 "rRNA(18S,5.8S,25S)" 25S yes 7956 4946 4959 74.490047 313.080897 193.785472 2.287321215 0.152348 199 9 14436 MT_21S 21S_rRNA3 yes 4639 751 769 31.744089 295.218676 163.4813825 2.213468302 0.027061 199 10 17805 YKL190W intron/exon no 176 121 138 45.044656 318.395826 181.720241 2.259403304 -0.05553 199 11 14774 MT_ORF11; Leu; Gln tRNALeu/intergenic no 716 496 518 29.544951 308.530994 169.0379725 2.227984275 -0.129114 199 12 13669 MT_ATP6 ATP6 yes 980 841 860 31.951328 295.664668 163.807998 2.214335103 0.031076 199 13 21933 copy of SH21373 no 40 44.666428 318.08289 181.374659 2.258576609 -0.054033 199 14 15678 YBR191W intron no 488 201 217 31.567983 283.809752 157.6888675 2.197801034 0.093816 199 15 6949 snR58 3_flank no 296 32.837957 286.134125 159.486041 2.202722677 0.119985 199 16 12774 MT_COX1 ai1 no 13084 811 833 30.922303 313.869122 172.3957125 2.236526461 -0.113117 199 17 9078 snR14 / U4 RNA U4 yes 360 6 22 97.513843 389.466856 243.4903495 2.386481753 -0.204328 199 18 19723 Negative Control no 60 NA #VALUE! 31.150141 284.010093 157.580117 2.197501419 0.078603 199 19 1093 Gly4 GlyTCC 5_flank no 272 34.392568 290.761302 162.576935 2.211058932 0.130996 199 20 20912 YLR333C spliced yes 40 13 35 31.262021 312.422206 171.8421135 2.235129605 -0.093201 199 21 18354 YMR033W 5_exon no 186 1 20 29.19077 290.801349 159.9960595 2.204109287 -0.046579 199 22 15218 MT_COX3 cox3 no 1010 691 708 33.528074 303.499725 168.5138995 2.226635729 0.01449 199 23 17531 YJL177W 5_exon no 417 21 36 29.420834 287.672096 158.546465 2.200156563 -0.019974 199 24 745 Gln4 GlnTTG_iii 5_flank/tRNA no 272 38.28886 311.681323 174.9850915 2.243001049 -0.017157 199 25 21851 copy of SH17601 no 243 29.977413 313.636144 171.8067785 2.235040295 -0.144156 199 26 12081 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7291 7309 34.774424 312.325097 173.5497605 2.239424019 -0.041235 199 27 13047 MT_COX1 ai2 no 13084 4906 4926 30.768016 292.168713 161.4683645 2.208087446 0.013569 199 28 20297 YEL012W spliced yes 40 5 23 33.426244 310.994739 172.2104915 2.236059606 -0.047059 199 29 4714 snR4 snR4 yes 386 106 120 33.802554 275.234145 154.5183495 2.188980061 0.221724 199 30 12343 5S rRNA NTS2 no 1420 671 683 48.022669 276.828694 162.4256815 2.210654698 0.33732 199 31 20054 YBR220C spliced yes 40 9 26 32.018972 275.11789 153.568431 2.186301947 0.165897 199 32 15689 YBR191W intron/exon no 488 421 440 32.162549 296.297535 164.230042 2.215452604 0.03402 199 33 153 Arg1 ArgACG_i 3_flank no 273 32.238252 325.228811 178.7335315 2.252206036 -0.172642 199 34 20307 YER003C spliced yes 40 21 37 39.298643 299.270234 169.2844385 2.228617037 0.098755 199 35 1517 Leu3 LeuCAA_iii intron/tRNA no 314 i18 40 35.761672 307.04971 171.405691 2.234025237 0.012455 199 36 4836 snR8 5_flank no 390 32.216249 289.102569 160.659409 2.205906165 0.081023 199 37 1264 Ile2 IleTAT_i tRNA yes 333 16 31 34.514805 289.383328 161.9490665 2.209378449 0.144205 199 38 10981 "rRNA(18S,5.8S,25S)" 18S yes 7956 1791 1809 35.622565 321.150841 178.386703 2.251362479 -0.107374 199 39 4723 snR4 snR4 yes 386 151 168 32.026008 292.149731 162.0878695 2.209750514 0.055534 199 40 1326 Ile3 IleTAT_ii tRNA yes 333 11 25 36.499996 306.099566 171.299781 2.233756808 0.028576 199 41 17056 YGR214W intron no 555 261 283 31.625325 291.145861 161.385593 2.207864762 0.048724 199 42 12322 5S rRNA NTS2 no 1420 566 585 33.584867 291.659317 162.622092 2.211179544 0.108256 199 43 20059 YBR255C-A spliced yes 40 9 30 33.196258 302.264975 167.7306165 2.224612343 0.020446 199 44 18518 YMR201C 3_exon no 184 161 177 61.898608 348.525428 205.212018 2.312202791 -0.189774 199 45 5978 snR36 snR36/3_flank no 555 32.441979 279.436028 155.9390035 2.192954755 0.150929 199 46 11689 "rRNA(18S,5.8S,25S)" 25S yes 7956 5331 5348 44921.72807 25698.6778 35310.20294 4.547900214 -0.131079 199 47 18380 YMR116C intron no 373 101 119 47.050543 364.235585 205.643064 2.313114066 -0.397144 199 48 21575 copy of SH5621 no 750 35.901849 267.500587 151.701218 2.180989068 0.337115 199 49 4946 snR9 snR9 yes 387 136 153 31.347936 294.897549 163.1227425 2.212514514 0.015951 199 50 7990 snoRNA cluster 2 snR57/intergenic no 739 186 202 31.08532 285.59844 158.34188 2.199595797 0.06616 199 51 20091 YDL012C spliced yes 40 17 33 31.893923 273.445193 152.669558 2.183752448 0.172974 199 52 16056 YDL219W 5_exon no 171 1 17 41.109719 285.768651 163.439185 2.213356188 0.231856 199 53 906 Glu3 GluTTC_ii tRNA yes 272 41 54 1632.299947 1473.818672 1553.05931 3.191188041 0.48241 199 54 7408 snR69 5_flank no 301 30.649899 285.735569 158.192734 2.199186532 0.050546 199 55 21015 YMR033W spliced yes 40 5 21 37.079609 279.949112 158.5143605 2.200068613 0.255795 199 56 11447 "rRNA(18S,5.8S,25S)" 25S yes 7956 4121 4138 31.010753 287.530715 159.270734 2.202135982 0.051237 199 57 4026 SRP SRP yes 875 21 37 33.367159 282.00301 157.6850845 2.197790615 0.163455 199 58 17766 YKL157W 3_exon no 483 461 478 31.472266 292.529442 162.000854 2.209517304 0.034929 199 59 12752 MT_COX1 ai1 no 13084 481 498 35.988851 290.778861 163.383856 2.213209142 0.149633 199 60 276 Arg4 ArgCCT 5_flank no 272 31.894429 309.823365 170.858897 2.232637598 -0.057156 199 61 19813 Negative Control no 60 NA #VALUE! 36.479152 268.445994 152.462573 2.183163245 0.347277 199 62 8627 snR19 / U1 RNA U1 yes 868 631 643 1045.939176 1127.912811 1086.925994 3.036199975 0.330803 199 63 2979 Ser1 SerAGA_i 3_flank no 283 32.638964 297.046377 164.8426705 2.217069642 0.044727 199 64 13786 MT_COB intronic no 7308 976 1000 30.689136 302.188827 166.4389815 2.22125505 -0.051197 199 65 8656 LSR1 / U2 RNA 5_flank no 1375 33.184722 287.621553 160.4031375 2.205212859 0.121407 199 66 4030 SRP SRP yes 875 41 59 33.411755 305.585545 169.49865 2.229166244 -0.003876 199 67 47 Ala1 AlaAGC 3_flank no 273 31.303669 305.835692 168.5696805 2.226779464 -0.05258 199 68 20035 YBR186W spliced yes 40 5 21 33.669014 292.004114 162.836564 2.21175193 0.108694 199 69 7848 snoRNA cluster1 snR74/intergenic no 1574 1036 1054 31.397002 285.343424 158.370213 2.199673501 0.078223 199 70 2588 Pro2 ProTGG_i 3_flank no 303 33.612128 311.832842 172.722485 2.237348878 -0.051413 199 71 6430 snR45 5_flank/snR45 no 372 38.027983 301.986039 170.007011 2.230466832 0.070513 199 72 2806 Pro6 ProTGG_v 3_flank no 302 33.308869 269.263466 151.2861675 2.179799221 0.246741 199 73 9788 RUF4 RUF4 yes 988 716 738 35.367805 366.57551 200.9716575 2.303134814 -0.476484 199 74 17560 YJL189W intron no 486 201 222 32.946322 309.516921 171.2316215 2.233583969 -0.041275 199 75 11013 "rRNA(18S,5.8S,25S)" 18S yes 7956 1951 1966 2715.529807 2191.174227 2453.352017 3.389759867 0.516568 199 76 9526 RUF3 RUF3 yes 631 16 30 34.988208 294.598483 164.7933455 2.216939671 0.105705 199 77 7291 snR66 5_flank no 286 35.015947 347.078625 191.047286 2.281140873 -0.325876 199 78 13839 MT_COB bi2 no 7308 1771 1793 32.885513 326.2286 179.5570565 2.254202477 -0.171996 199 79 3061 Ser3 SerCGA tRNA yes 301 1 13 274.390106 452.333579 363.3618425 2.560339319 0.353044 199 80 6847 snR52 3_flank no 292 37.647114 319.68211 178.664612 2.252038541 -0.089519 199 81 425 Asp1 AspGTC_i 5_flank no 271 35.473946 325.614783 180.5443645 2.256583937 -0.146325 199 82 432 Asp1 AspGTC_i 5_flank/tRNA no 271 35.470365 306.389498 170.9299315 2.232818119 0.014388 199 83 17045 YGR214W exon/intron no 555 41 60 33.131329 316.200165 174.665747 2.242207746 -0.091751 199 84 6745 snR50 5_flank no 290 35.216093 297.19122 166.2036565 2.220640574 0.086739 199 85 11620 "rRNA(18S,5.8S,25S)" 25S yes 7956 4986 5003 250.549878 398.281331 324.4156045 2.511101736 0.515063 199 86 17154 YHR012W intron no 219 141 160 34.766593 319.409385 177.087989 2.248189106 -0.096758 199 87 17384 YIL069C 5_exon no 509 21 37 34.510776 326.7348 180.622788 2.256772542 -0.158433 199 88 7774 snoRNA cluster1 intergenic no 1574 666 680 40.774288 326.177144 183.475716 2.263578591 -0.135945 199 89 10502 RUF8 RUF8 yes 1151 436 452 33.932047 308.524349 171.228198 2.233575286 -0.021131 199 90 439 Asp1 AspGTC_i tRNA yes 271 16 28 201.765089 377.407155 289.586122 2.461777745 0.427356 199 91 2124 Met1 MetCAT_i tRNA yes 273 6 22 52.342517 352.310726 202.3266215 2.30605303 -0.279164 199 92 9466 RUF2 RUF2 yes 468 171 187 37.069001 306.059011 171.564006 2.234426178 0.030748 199 93 10036 RUF6 RUF6 yes 1251 26 43 30.485035 287.926085 159.20556 2.201958231 0.030853 199 94 1797 Leu8 LeuTAG_i tRNA yes 301 11 24 470.856243 411.284052 441.0701475 2.644507665 1.088733 199 95 20654 YIL018W spliced yes 40 1 20 31.069554 300.295864 165.682709 2.219277187 -0.026762 199 96 4676 snR4 5_flank no 386 38.08646 305.57095 171.828705 2.235095717 0.03768 199 97 13253 MT_COX1 ai4 no 13084 7996 8017 29.909134 319.590944 174.750039 2.242417281 -0.181166 199 98 2618 Pro3 ProTGG_ii tRNA-intron no 303 i5 i22 29.919585 320.940057 175.429821 2.24410342 -0.188558 199 99 767 Gln4 GlnTTG_iii 3_flank no 272 40.140502 306.240595 173.1905485 2.238524188 0.036359 199 100 15431 YBL072C intron no 408 181 197 32.027717 301.063677 166.545697 2.221533416 0.000252 199 101 15143 MT_Thr1 5_flank no 272 76 100 30.013644 320.457428 175.235536 2.243622181 -0.182509 199 102 8616 snR19 / U1 RNA U1 yes 868 576 592 32.056107 249.452984 140.7545455 2.148462429 0.303139 199 103 20366 YER133W spliced yes 40 5 22 38.19255 318.09687 178.14471 2.250772931 -0.074316 199 104 12160 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7686 7705 36.090367 327.178064 181.6342155 2.259197662 -0.158134 200 2 16864 YGL187C intron no 442 141 160 50.546109 360.736965 205.641537 2.313110841 -0.350893 200 3 14660 MT_21S 21S_rRNA4 yes 4639 4111 4127 36.38802 306.260507 171.3242635 2.233818874 0.026005 200 4 21485 copy of SH1851 no 301 273.478153 494.790198 384.1341755 2.584482947 0.178677 200 5 18339 YML124C intron no 398 101 115 100.701686 378.351262 239.526474 2.379353521 -0.118709 200 6 15624 YBR181C intron no 452 261 279 45.785337 333.799872 189.7926045 2.278279286 -0.176254 200 7 2208 Phe1 PheGAA_i 5_flank no 292 47.829976 294.85524 171.342608 2.233865373 0.163705 200 8 2167 Met2 MetCAT_ii 5_flank no 272 30.548568 295.209851 162.8792095 2.211865653 -0.01297 200 9 19715 Negative Control no 60 NA #VALUE! 32.809465 299.531875 166.17067 2.220554371 0.034826 200 10 14828 MT_Lys; Arg1; Gly 3_flank no 682 601 623 27.26105 304.998852 166.129951 2.220447937 -0.216322 200 11 1012 Gly2 GlyCCC_ii tRNA yes 272 51 63 41.726467 298.221279 169.973873 2.23038217 0.114039 200 12 10590 RUF8 RUF8 yes 1151 876 893 32.047491 282.797843 157.422667 2.197067266 0.116135 200 13 14980 MT_COX 2; ORF1 COX2 no 2427 301 322 30.339952 324.087942 177.213947 2.248497899 -0.191959 200 14 4828 snR8 5_flank no 390 41.002069 294.663461 167.832765 2.22487675 0.145975 200 15 21023 YMR079W spliced yes 40 13 30 32.887831 309.389852 171.1388415 2.233348588 -0.040996 200 16 11403 "rRNA(18S,5.8S,25S)" 25S yes 7956 3901 3916 1239.521261 1465.021825 1352.271543 3.131063909 0.132744 200 17 558 Cys1 CysGCA 3_flank no 272 33.160544 277.286971 155.2237575 2.190958192 0.188019 200 18 14038 MT_COB bi4 no 7308 4756 4780 31.137574 321.798131 176.4678525 2.246665601 -0.160818 200 19 7258 snR65 snR65 yes 300 66 83 33.318426 312.288263 172.8033445 2.237552144 -0.058654 200 20 1709 Leu6 LeuGAG 3_flank no 282 37.625461 354.362773 195.994117 2.292243036 -0.37473 200 21 17312 YHR203C intron no 369 221 238 31.329547 274.051513 152.69053 2.183812103 0.142284 200 22 6735 snR49 3_flank no 365 42.12562 293.812067 167.9688435 2.225228732 0.156528 200 23 19983 YBL091C-A spliced yes 40 13 25 59.657283 304.584168 182.1207255 2.260359372 0.13629 200 24 13147 MT_COX1 intronic no 13084 6406 6423 34.064385 293.37688 163.7206325 2.214103414 0.104895 200 25 9850 RUF5-1 RUF5-1 yes 975 56 73 32.252928 300.998539 166.6257335 2.221742074 0.007968 200 26 17109 YHR001W intron no 163 61 80 30.443737 298.842977 164.643357 2.216544213 -0.039081 200 27 13141 MT_COX1 intronic no 13084 6316 6338 33.069845 304.554163 168.812004 2.227403325 0.000221 200 28 1994 Lys3 LysTTT_i 5_flank no 296 35.726696 307.488186 171.607441 2.234536115 0.008523 200 29 6384 snR43 snR43 yes 409 161 181 31.50573 309.27679 170.39126 2.231447314 -0.066461 200 30 17940 YLR093C 3_exon no 241 201 220 31.759575 323.807489 177.783532 2.24989153 -0.168012 200 31 410 Asn1 AsnGTT 3_flank no 274 41.249199 303.981589 172.615394 2.237079524 0.059534 200 32 14124 MT_COB intronic no 7308 6046 6068 32.077193 303.009444 167.5433185 2.224127113 -0.009997 200 33 4107 SRP SRP yes 875 426 438 45.024666 278.716747 161.8707065 2.209168262 0.309977 200 34 15051 MT_COX 2; ORF1 ORF1exon1 yes 2427 1366 1388 34.510442 320.397495 177.4539685 2.249085716 -0.107453 200 35 15773 YDL012C 5_exon no 186 1 17 34.504033 284.834271 159.669152 2.203221019 0.180047 200 36 12391 5S rRNA NTS2 no 1420 911 928 39.158569 288.136448 163.6475085 2.213909398 0.204361 200 37 13136 MT_COX1 ai3 no 13084 6241 6262 34.444103 299.774808 167.1094555 2.223001024 0.056169 200 38 13816 MT_COB bi2 no 7308 1426 1448 32.059954 315.237853 173.6489035 2.239672045 -0.097829 200 39 10341 RUF7 RUF7 yes 700 316 337 33.132471 284.553115 158.842793 2.200967515 0.13951 200 40 16241 YDR381W intron no 866 721 738 34.131688 285.091477 159.6115825 2.203064404 0.167056 200 41 19299 YPL198W exon/intron no 509 41 57 33.881786 305.712917 169.7973515 2.229930912 0.000879 200 42 18720 YNL130C intron/exon no 541 481 498 31.271715 284.168807 157.720261 2.197887487 0.081642 200 43 19758 Negative Control no 60 NA #VALUE! 33.145092 285.430333 159.2877125 2.202182275 0.13424 200 44 17790 YKL186C intron no 249 61 76 37.166352 274.116285 155.6413185 2.192124901 0.308798 200 45 6114 snR39B 5_flank no 296 31.220688 278.790605 155.0056465 2.190347519 0.114046 200 46 869 Glu2 GluTTC_i 3_flank no 272 40.644873 325.290795 182.967834 2.262374747 -0.128934 200 47 7751 snoRNA cluster1 snR76 yes 1574 551 566 1313.365885 1668.314291 1490.840088 3.173431062 0.002679 200 48 11125 "rRNA(18S,5.8S,25S)" 18S yes 7956 2511 2527 2907.290891 2211.301146 2559.296019 3.408120521 0.588431 200 49 19209 YPL081W intron no 601 341 359 31.088351 290.72773 160.9080405 2.206577746 0.033488 200 50 10109 RUF6 RUF6 yes 1251 391 408 30.845519 278.005247 154.425383 2.188718687 0.099018 200 51 20738 YJL191W spliced yes 40 9 23 36.889691 272.25456 154.5721255 2.189131179 0.322546 200 52 10017 RUF6 5_flank no 1251 65.964716 345.704193 205.8344545 2.313518073 -0.143058 200 53 1334 Ile3 IleTAT_ii tRNA-intron no 333 i14 i29 32.531442 283.263638 157.89754 2.198375364 0.128756 200 54 21902 copy of SH19202 no 601 30.521277 277.456755 153.989016 2.187489744 0.085228 200 55 6527 snR46 snR46 yes 397 126 143 41.101555 318.04315 179.5723525 2.254239472 -0.065536 200 56 10865 "rRNA(18S,5.8S,25S)" 18S yes 7956 1211 1227 226.897187 449.931455 338.414321 2.529448733 0.183995 200 57 2043 Lys3 LysTTT_i 3_flank no 296 33.19437 315.193533 174.1939515 2.241033071 -0.083083 200 58 4955 snR9 snR9/3_flank no 387 29.17512 283.625043 156.4000815 2.194236975 -0.014139 200 59 21723 copy of SH11713 no 7956 65.949471 305.937676 185.9435735 2.269381173 0.16016 200 60 6849 snR52 3_flank no 292 31.713632 333.810352 182.761992 2.261885883 -0.243799 200 61 20970 YML034W spliced yes 40 1 18 40.622301 315.137221 177.879761 2.250126537 -0.042029 200 62 1806 Leu8 LeuTAG_i intron/tRNA no 301 i18 e23 32.192435 272.505209 152.348822 2.1828391 0.189107 200 63 12988 MT_COX1 ai2 no 13084 4021 4043 30.266622 340.558959 185.4127905 2.26813969 -0.3126 200 64 6223 snR40 3_flank no 297 30.529176 311.508972 171.019074 2.233044551 -0.112581 200 65 12665 MT_15S 15S yes 1848 1726 1748 30.78026 320.929071 175.8546655 2.245153895 -0.158914 200 66 6907 snR56 3_flank no 288 30.999469 327.921616 179.4605425 2.253968976 -0.209244 200 67 17824 YKR057W intron no 422 341 360 33.432829 285.015 159.2239145 2.202008297 0.145947 200 68 1142 His1 HisGTG 5_flank no 272 31.273778 288.008992 159.641385 2.203145487 0.056997 200 69 12044 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7106 7123 33.58422 289.819294 161.701757 2.208714739 0.119888 200 70 20528 YGR118W spliced yes 40 21 33 49.524948 279.274569 164.3997585 2.215901175 0.317578 200 71 11405 "rRNA(18S,5.8S,25S)" 25S yes 7956 3911 3926 9762.759729 13866.34181 11814.55077 4.072417213 -0.973694 200 72 3798 RNaseP 5_flank no 569 43.488221 294.079651 168.783936 2.22733111 0.157377 200 73 20057 YBR255C-A spliced yes 40 1 23 35.380996 360.9604 198.170698 2.297039439 -0.43409 200 74 15153 MT_Thr1 3_flank no 272 226 254 35.210914 338.751956 186.981435 2.271798488 -0.257519 200 75 4707 snR4 snR4 yes 386 71 83 72.163066 339.726187 205.9446265 2.313750465 -0.059724 200 76 11763 "rRNA(18S,5.8S,25S)" 25S yes 7956 5701 5718 101.818811 636.369823 369.094317 2.567137358 -1.219169 200 77 7610 snR189 snR189 yes 389 121 137 37.284617 325.350502 181.3175595 2.258439865 -0.139511 200 78 18279 YML056C 3_exon no 508 461 475 39.626678 327.288897 183.4577875 2.263536152 -0.149344 200 79 5469 snR32 snR32 yes 388 6 24 33.040841 284.046259 158.54355 2.200148578 0.1399 200 80 11583 "rRNA(18S,5.8S,25S)" 25S yes 7956 4801 4814 141.643868 320.259071 230.9514695 2.36352073 0.483728 200 81 10562 RUF8 RUF8 yes 1151 736 752 35.487451 287.063671 161.275561 2.207568561 0.175602 200 82 17954 YLR185W intron no 459 61 78 40.00278 330.679069 185.3409245 2.267971325 -0.176265 200 83 7515 snR79 5_flank no 284 37.652843 314.771861 176.212352 2.246036348 -0.046255 200 84 2251 Phe1 PheGAA_i 3_flank no 292 35.249027 285.677776 160.4634015 2.205375994 0.184771 200 85 2646 Pro3 ProTGG_ii 3_flank no 303 35.051318 310.366805 172.7090615 2.237315124 -0.022407 200 86 1416 Leu1 LeuCAA_i 3_flank no 315 37.039942 287.52245 162.281196 2.2102682 0.189385 200 87 1216 Ile1 IleAAT tRNA yes 274 40 52 2455.80903 2105.026725 2280.417878 3.358014437 0.45227 200 88 21739 copy of SH12549 no 664 34.294382 329.626568 181.960475 2.259977062 -0.183627 200 89 18064 YLR344W exon/intron no 547 41 58 36.13196 317.087763 176.6098615 2.24701495 -0.070502 200 90 5403 snR31 snR31 yes 425 81 96 35.739095 292.149261 163.944178 2.214695999 0.135129 200 91 11492 "rRNA(18S,5.8S,25S)" 25S yes 7956 4346 4361 42806.16293 6874.435323 24840.29913 4.395156821 1.9995 200 92 17438 YIL133C intron no 390 241 258 40.101386 325.786095 182.9437405 2.262317555 -0.135024 200 93 2803 Pro6 ProTGG_v 3_flank no 302 36.544156 282.22651 159.385333 2.202448354 0.229749 200 94 5158 snR13 5_flank no 324 36.20256 310.190574 173.196567 2.238539279 -0.008877 200 95 8905 LSR1 / U2 RNA U2/3_flank no 1375 35.967334 279.390192 157.678763 2.197773204 0.248124 200 96 11331 "rRNA(18S,5.8S,25S)" 25S yes 7956 3541 3556 16616.31411 3002.258701 9809.286405 3.991637415 2.224124 200 97 13927 MT_COB bi3 no 7308 3091 3108 35.818837 321.411909 178.615373 2.251918835 -0.109142 200 98 21898 copy of SH19003 no 309 31.811999 289.956972 160.8844855 2.206514166 0.062404 200 99 1477 Leu2 LeuCAA_ii 3_flank no 314 35.934533 314.207537 175.071035 2.243214299 -0.045507 200 100 10696 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 366 384 31.940258 314.680105 173.3101815 2.238824077 -0.095001 200 101 12620 MT_15S 15S yes 1848 1051 1068 34.020665 320.609098 177.3148815 2.248745186 -0.115004 200 102 5855 snR35 snR35 yes 740 461 482 34.03473 321.037997 177.5363635 2.24928732 -0.118136 200 103 14365 MT_ORF9; ORF10 ORF9 yes 578 241 262 34.012795 327.083683 180.548239 2.256593257 -0.16451 200 104 17218 YHR041C exon/intron no 201 41 58 36.015187 320.927911 178.471549 2.251568993 -0.104432 201 2 17969 YLR185W intron no 459 361 380 30.662111 341.058379 185.860245 2.269186505 -0.310846 201 3 5775 snR35 snR35 yes 740 61 77 51.285637 345.171862 198.2287495 2.297166641 -0.232406 201 4 1308 Ile3 IleTAT_ii 5_flank no 333 32.401625 304.27509 168.3383575 2.226183085 -0.007163 201 5 415 Asn1 AsnGTT 3_flank no 274 83.820704 316.53025 200.175477 2.301410872 0.182787 201 6 21148 YNL246W spliced yes 40 13 29 35.228092 282.779228 159.00366 2.201407121 0.209728 201 7 8760 LSR1 / U2 RNA U2 yes 1375 441 457 38.243899 324.39729 181.3205945 2.258447134 -0.128993 201 8 120 Arg1 ArgACG_i 5_flank no 273 80.698023 311.255512 195.9767675 2.29220459 0.204626 201 9 7982 snoRNA cluster 2 snR57 yes 739 146 162 50.74346 330.73847 190.740965 2.280443975 -0.124987 201 10 3527 Tyr2 TyrGTA_ii 5_flank no 289 32.333791 316.438721 174.386256 2.241512254 -0.103704 201 11 15442 YBL087C 5_exon no 604 1 18 31.7397 302.441586 167.090643 2.22295213 -0.017588 201 12 18215 YML025C intron no 199 101 117 32.120148 298.078005 165.0990765 2.217744644 0.021612 201 13 14474 MT_21S 21S_rRNA3 yes 4639 1321 1342 32.439965 326.15382 179.2968925 2.253572763 -0.177078 201 14 19740 Negative Control no 60 NA #VALUE! 36.841265 303.534767 170.188016 2.230928975 0.053224 201 15 8775 LSR1 / U2 RNA U2 yes 1375 516 532 34.943519 282.543867 158.743693 2.200696479 0.208129 201 16 18094 YLR367W intron no 583 101 120 30.880315 294.333186 162.6067505 2.211138571 0.003784 201 17 11339 "rRNA(18S,5.8S,25S)" 25S yes 7956 3581 3598 56.296628 321.215884 188.756256 2.275901354 -0.018544 201 18 7324 snR66 3_flank no 286 31.038295 271.754813 151.396554 2.18011599 0.138979 201 19 6748 snR50 5_flank no 290 41.675631 268.664226 155.1699285 2.19080756 0.405556 201 20 20867 YLR093C spliced yes 40 21 40 33.292031 328.084305 180.688168 2.256929715 -0.180927 201 21 9407 RUF1 3_flank no 750 33.391732 304.60804 168.999886 2.227886412 0.003794 201 22 6663 snR48 3_flank no 313 50.652908 348.50466 199.578784 2.300114372 -0.260965 201 23 6279 snR42 snR42 yes 551 176 192 84.466866 379.762197 232.1145315 2.36570233 -0.237178 201 24 6464 snR45 snR45/3_flank no 372 36.230102 283.149592 159.689847 2.203277305 0.218106 201 25 14835 MT_Asp 5_flank no 275 46 67 32.253055 319.394573 175.823814 2.245077697 -0.127716 201 26 19331 YPL218W intron/exon no 239 181 197 33.751382 312.170344 172.960863 2.237947844 -0.052375 201 27 3566 Tyr2 TyrGTA_ii 3_flank no 289 33.038332 294.921118 163.979725 2.214790154 0.070647 201 28 14672 MT_21S 21S_rRNA4 yes 4639 4291 4309 28.878417 313.585826 171.2321215 2.233585237 -0.182862 201 29 15258 MT_9S 5_flank no 701 46 72 31.427037 318.418537 174.922787 2.242846388 -0.130895 201 30 1518 Leu3 LeuCAA_iii intron/tRNA no 314 i23 43 52.44085 324.409215 188.4250325 2.275138599 -0.065205 201 31 12690 MT_ORF 8 5_flank no 491 16 44 31.832027 301.334505 166.583266 2.221631373 -0.007803 201 32 1541 Leu3 LeuCAA_iii 3_flank no 314 34.272126 316.295779 175.2839525 2.243742158 -0.078481 201 33 15306 YAL001C intron no 190 101 122 32.019666 327.801976 179.910821 2.255057285 -0.194935 201 34 11086 "rRNA(18S,5.8S,25S)" 18S yes 7956 2316 2331 3592.996038 4652.070165 4122.533102 3.615164151 -0.373008 201 35 6659 snR48 3_flank no 313 41.378876 320.906376 181.142626 2.258020659 -0.089162 201 36 9214 snR6 / U6 RNA 5_flank no 312 34.357822 318.555649 176.4567355 2.24663824 -0.095041 201 37 21726 copy of SH11921 no 7956 34.325121 303.569008 168.9470645 2.22775065 0.023654 201 38 16924 YGR001C 5_exon no 162 1 20 34.272882 283.478384 158.875633 2.201057294 0.181814 201 39 18358 YMR033W intron no 186 81 97 38.822087 306.169636 172.4958615 2.23677868 0.033958 201 40 6051 snR37 snR37 yes 586 171 190 34.029635 307.158835 170.594235 2.231964351 -0.008979 201 41 14510 MT_21S 21S_rRNA3 yes 4639 1861 1885 31.502573 333.322511 182.412542 2.261054695 -0.242949 201 42 17843 YKR094C intron no 468 301 318 33.465448 306.653589 170.0595185 2.230600945 -0.011833 201 43 2769 Pro6 ProTGG_v 5_flank no 302 30.823893 326.754164 178.7890285 2.252340865 -0.202782 201 44 8842 LSR1 / U2 RNA U2 yes 1375 851 866 1595.461105 3791.588548 2693.524827 3.430320983 -1.044649 201 45 20799 YKL157W spliced yes 40 13 32 34.373925 294.86437 164.6191475 2.216480348 0.096142 201 46 18429 YMR142C intron no 502 81 97 46.94082 307.066435 177.0036275 2.247982167 0.05023 201 47 6570 snR47 5_flank no 299 86.110724 386.104651 236.1076875 2.373110128 -0.26364 201 48 15322 YAL003W intron no 466 241 257 33.256771 262.629661 147.943216 2.170095055 0.291036 201 49 7676 snoRNA cluster1 snR78/intergenic no 1574 176 194 30.891534 278.328528 154.610031 2.189237667 0.099786 201 50 4305 telomerase RNA telomerase yes 1501 561 578 32.766104 356.926562 194.846333 2.289692237 -0.410114 201 51 1747 Leu7 LeuTAA tRNA yes 284 30 e12 32.595031 334.235288 183.4151595 2.263435228 -0.235592 201 52 13827 MT_COB bi2 no 7308 1591 1608 59.518775 368.694711 214.106743 2.330630345 -0.344951 201 53 10510 RUF8 RUF8 yes 1151 476 497 30.405478 304.265734 167.335606 2.223588361 -0.073504 201 54 6405 snR43 3_flank no 409 32.534449 276.220468 154.3774585 2.188583887 0.17521 201 55 5269 snR30 snR30 yes 801 196 213 33.711601 328.251658 180.9816295 2.257634494 -0.177002 201 56 17948 YLR128W intron no 194 121 137 32.856314 329.85227 181.354292 2.258527838 -0.199664 201 57 12551 MT_15S 5_flank no 1848 16 40 30.957693 286.194518 158.5761055 2.200237748 0.058025 201 58 12435 5S rRNA NTS2 no 1420 1131 1152 29.037546 282.125257 155.5814015 2.191957679 -0.014422 201 59 11178 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2776 2789 78.51955 308.01469 193.26712 2.286157975 0.216418 201 60 19184 YPL079W intron no 521 361 382 33.680483 383.950617 208.81555 2.319762836 -0.610471 201 61 3590 Val1 ValAAC_i 5_flank no 274 31.755667 292.329837 162.042752 2.20962961 0.045547 201 62 8934 snR17a / U3a 5_flank no 690 34.163998 288.765847 161.4649225 2.208078188 0.144466 201 63 5261 snR30 snR30 yes 801 156 170 34.439377 277.395778 155.9175775 2.192895079 0.22681 201 64 3376 Thr4 ThrTGT_ii 5_flank no 272 32.520886 295.218133 163.8695095 2.214498154 0.052309 201 65 18803 YNL301C intron no 532 401 417 39.459813 275.331263 157.395538 2.196992416 0.322662 201 66 226 Arg3 ArgCCG 5_flank/tRNA no 272 33.026811 278.422329 155.72457 2.19235714 0.176276 201 67 14231 MT_ATP9 3_flank no 431 361 387 33.22852 310.612014 171.920267 2.235327077 -0.046472 201 68 20604 YHR077C spliced yes 40 5 21 46.984913 354.697937 200.841425 2.302853294 -0.32887 201 69 6623 snR48 5_flank no 313 33.45333 299.942944 166.698137 2.221930746 0.042699 201 70 9443 RUF2 RUF2 yes 468 56 70 35.731555 325.009327 180.370441 2.256165367 -0.140464 201 71 19134 YPL075W intron no 851 201 222 35.67135 340.848706 188.260028 2.274758119 -0.273574 201 72 4957 snR9 3_flank no 387 33.297742 343.038281 188.1680115 2.274545795 -0.297753 201 73 2910 Pro8 ProTGG_vii tRNA yes 305 39 51 141.654983 347.57697 244.6159765 2.388484819 0.307765 201 74 3622 Val1 ValAAC_i 3_flank no 274 30.793167 290.40613 160.5996485 2.20574459 0.025564 201 75 21382 Lys3_4 spliced yes 40 17 34 35.171035 273.233461 154.202248 2.188090705 0.276598 201 76 7983 snoRNA cluster 2 snR57 yes 739 151 168 35.129046 310.452785 172.7909155 2.237520906 -0.022175 201 77 1557 Leu4 LeuCAA_iv 5_flank no 314 32.923416 316.820856 174.872136 2.242720615 -0.099204 201 78 15576 YBR084C intron no 606 281 297 48.743604 323.020125 185.8818645 2.26923702 -0.074221 201 79 6535 snR46 snR46 yes 397 166 183 33.12292 251.068153 142.0955365 2.152580436 0.345412 201 80 11803 "rRNA(18S,5.8S,25S)" 25S yes 7956 5901 5916 161.888467 343.494713 252.69159 2.402590788 0.435561 201 81 16052 YDL191W intron no 591 501 523 31.031675 315.701883 173.366779 2.23896588 -0.12015 201 82 2983 Ser1 SerAGA_i 3_flank no 283 33.281296 310.567229 171.9242625 2.23533717 -0.045458 201 83 9537 RUF3 RUF3 yes 631 71 90 33.204913 328.171194 180.6880535 2.256929439 -0.182667 201 84 887 Glu3 GluTTC_ii 5_flank no 272 33.072494 295.389467 164.2309805 2.215455086 0.068804 201 85 10274 RUF7 5_flank no 700 32.902019 314.224598 173.5633085 2.23945792 -0.079138 201 86 21808 copy of SH15283 no 701 50.512578 312.615277 181.5639275 2.259029569 0.020965 201 87 19571 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 121 139 34.68322 320.344125 177.5136725 2.249231809 -0.104974 201 88 207 Arg2 ArgACG_ii 3_flank no 273 34.399176 276.901466 155.650321 2.192150021 0.228874 201 89 13990 MT_COB intronic no 7308 4036 4057 29.730175 282.086549 155.908362 2.192869409 0.022387 201 90 8553 snR19 / U1 RNA U1 yes 868 261 277 31.509754 273.474268 152.492011 2.183247092 0.154004 201 91 20462 YGL183C spliced yes 40 5 22 39.534323 346.014602 192.7744625 2.285049501 -0.302289 201 92 19161 YPL075W intron no 851 741 761 34.810414 321.964555 178.3874845 2.251364381 -0.11655 201 93 3996 RNase MRP 3_flank no 540 32.301569 275.992019 154.146794 2.187934497 0.169232 201 94 2533 Pro2 ProTGG_i 5_flank no 303 31.956873 314.963711 173.460292 2.239200073 -0.097012 201 95 16005 YDL137W intron no 432 181 193 41.829227 294.668543 168.248885 2.225952195 0.14775 201 96 2580 Pro2 ProTGG_i 3_flank no 303 35.626148 296.813804 166.219976 2.220683215 0.094672 201 97 10190 RUF6 RUF6 yes 1251 796 812 37.618342 334.98823 186.303286 2.270220515 -0.220263 201 98 15004 MT_COX 2; ORF1 COX2 no 2427 661 680 29.627804 276.875487 153.2516455 2.185405146 0.041857 201 99 8718 LSR1 / U2 RNA U2 yes 1375 231 247 33.736888 305.0849 169.410894 2.228941334 0.004186 201 100 13327 MT_COX1 ai5a no 13084 9106 9127 33.822088 326.714761 180.2684245 2.255919663 -0.164049 201 101 1639 Leu5 LeuCAA_v intron/tRNA no 315 i23 43 35.912328 282.933688 159.423008 2.202550999 0.216343 201 102 18423 YMR133W 3_exon no 225 181 199 35.937026 295.030398 165.483712 2.218755254 0.113164 201 103 8205 snoRNA cluster 3; intergenic/snR51 no 743 536 557 35.921442 298.286867 167.1041545 2.222987247 0.085856 201 104 5407 snR31 snR31 yes 425 101 120 35.871957 326.163669 181.017813 2.257721314 -0.150012 202 2 6690 snR49 5_flank no 365 30.640285 310.882439 170.761362 2.23238961 -0.105081 202 3 12502 MT_tRNA Pro 3_flank no 272 181 203 32.51964 339.199886 185.859763 2.269185379 -0.272989 202 4 12327 5S rRNA NTS2 no 1420 591 608 32.439905 275.28534 153.8626225 2.18713313 0.178415 202 5 15620 YBR181C intron no 452 181 199 30.458135 268.246453 149.352294 2.174211898 0.126964 202 6 11264 "rRNA(18S,5.8S,25S)" 5.8S/ITS2 no 7956 3206 3225 33.405177 270.651141 152.028159 2.181924036 0.240292 202 7 13562 MT_COX1 exon6 yes 13084 12631 12647 37.435037 313.353269 175.394153 2.244015111 -0.034164 202 8 9842 RUF5-1 RUF5-1 yes 975 16 37 29.835571 291.311432 160.5735015 2.205673878 -0.014965 202 9 19671 SIR1 2.4 SIR1 2.4 yes 401 141 157 33.092787 263.501696 148.2972415 2.171133073 0.279633 202 10 5356 snR30 3_flank no 801 67.741378 293.460875 180.6011265 2.256720455 0.275006 202 11 9983 RUF5-1 RUF5-1 yes 975 721 743 29.81602 312.940113 171.3780665 2.233955239 -0.145703 202 12 11233 "rRNA(18S,5.8S,25S)" ITS1/5.8S no 7956 3051 3069 9386.460333 9685.848119 9536.154226 3.979373266 -0.424095 202 13 7125 snR63 snR63 yes 455 131 147 35.535347 286.608106 161.0717265 2.207019314 0.180086 202 14 16979 YGR034W intron no 454 361 382 32.627287 271.739414 152.1833505 2.182367141 0.2083 202 15 5762 snR35 5_flank/snR35 no 740 36.913118 302.782516 169.847817 2.230059969 0.060163 202 16 135 Arg1 ArgACG_i tRNA yes 273 51 65 44.327265 304.036723 174.181994 2.241003258 0.068763 202 17 12384 5S rRNA NTS2 no 1420 876 895 37.067489 325.26903 181.1682595 2.258082112 -0.139344 202 18 7554 snR79 3_flank no 284 37.136245 271.524845 154.330545 2.18845189 0.331937 202 19 19536 CBP1 1.2 CBP1 1.2 yes 401 221 238 30.918099 327.664443 179.291271 2.253559146 -0.208393 202 20 10355 RUF7 RUF7 yes 700 386 400 44.706733 280.809816 162.7582745 2.211543077 0.288425 202 21 12754 MT_COX1 ai1 no 13084 511 530 33.224212 308.27127 170.747741 2.232354967 -0.027831 202 22 4191 telomerase RNA 5_flank/telomerase no 1501 31.272421 268.256434 149.7644275 2.175408671 0.167909 202 23 5253 snR30 snR30 yes 801 116 130 33.630536 265.516956 149.573746 2.17485537 0.282575 202 24 147 Arg1 ArgACG_i 3_flank no 273 36.100135 327.38176 181.7409475 2.259452788 -0.159849 202 25 13522 MT_COX1 intronic no 13084 12031 12050 34.31616 314.795844 174.556002 2.241934786 -0.066202 202 26 9332 RUF1 RUF1 yes 750 236 253 36.933331 300.537344 168.7353375 2.227206044 0.078783 202 27 11590 "rRNA(18S,5.8S,25S)" 25S yes 7956 4836 4851 39.602864 285.328394 162.465629 2.210761496 0.232755 202 28 8328 snoRNA cluster4 intergenic no 638 426 445 33.25188 278.037313 155.6445965 2.192134048 0.185916 202 29 9088 snR14 / U4 RNA U4 yes 360 56 75 31.27851 285.57969 158.4291 2.199834955 0.07275 202 30 19897 snR17A spliced yes 40 17 36 31.502945 288.637798 160.0703715 2.204310953 0.060605 202 31 18914 YOL120C intron/exon no 547 481 501 36.27833 300.92756 168.602945 2.226865156 0.068167 202 32 18305 YML073C intron no 515 301 318 34.101663 297.051305 165.576484 2.218998656 0.074587 202 33 2845 Pro7 ProTGG_vi tRNA/intron no 303 32 i9 36.498559 277.298751 156.898655 2.195619221 0.272764 202 34 17883 YLR048W intron no 459 181 197 38.862049 327.252811 183.05743 2.262587361 -0.151817 202 35 8978 snR17a / U3a U3a yes 690 176 194 31.904838 277.269198 154.587018 2.18917302 0.147827 202 36 12204 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7906 7921 38.851197 287.1574 163.0042985 2.212199057 0.212293 202 37 8817 LSR1 / U2 RNA U2 yes 1375 726 743 34.176141 312.871781 173.523961 2.239359453 -0.052743 202 38 12472 5S rRNA 5S yes 1420 1316 1331 1987.246934 1818.990321 1903.118628 3.27946586 0.40895 202 39 15156 MT_Val 5_flank no 276 16 44 36.347545 302.643915 169.49573 2.229158762 0.054901 202 40 20567 YHR010W spliced yes 40 9 25 35.045556 293.172902 164.109229 2.215133005 0.118371 202 41 19900 snR17B spliced yes 40 5 21 33.674778 280.141781 156.9082795 2.19564586 0.185229 202 42 21706 copy of SH11081 no 7956 12584.95901 15279.58947 13932.27424 4.144022014 -0.825148 202 43 5531 snR33 5_flank no 383 32.970455 286.405044 159.6877495 2.2032716 0.122447 202 44 14576 MT_21S intronic no 4639 2851 2875 32.524913 270.237115 151.381014 2.18007141 0.215225 202 45 20773 YKL006C-A spliced yes 40 1 17 34.244618 273.742245 153.9934315 2.187502197 0.245299 202 46 13330 MT_COX1 ai5a no 13084 9151 9172 33.787859 264.05296 148.9204095 2.172954222 0.297628 202 47 10594 RUF8 RUF8 yes 1151 896 908 39.776051 264.875918 152.3259845 2.182773994 0.421641 202 48 3383 Thr4 ThrTGT_ii tRNA yes 272 1 15 36.231439 319.288674 177.7600565 2.24983418 -0.089578 202 49 21304 YPL218W spliced yes 40 13 29 45.391946 299.708255 172.5501005 2.236915217 0.111475 202 50 2053 Lys4 LysTTT_ii 5_flank no 296 34.718866 266.402884 150.560875 2.17771213 0.309699 202 51 17115 YHR010W 5_exon no 661 21 38 32.51583 308.472138 170.493984 2.231709059 -0.038365 202 52 8294 snoRNA cluster4 intergenic no 638 256 273 32.449357 288.057618 160.2534875 2.20480749 0.095218 202 53 3210 Thr1 ThrAGT 5_flank no 273 38.648102 386.314916 212.481509 2.327321142 -0.603578 202 54 1428 Leu2 LeuCAA_ii 5_flank no 314 30.438167 338.872746 184.6554565 2.266362145 -0.297993 202 55 2839 Pro7 ProTGG_vi tRNA yes 303 1 13 218.463689 565.035302 391.7494955 2.593008446 -0.294129 202 56 5159 snR13 5_flank no 324 36.950089 394.586449 215.768269 2.333987577 -0.670538 202 57 18288 YML067C intron/exon no 193 141 158 45.56807 416.319936 230.944003 2.363506689 -0.750739 202 58 4132 SRP SRP yes 875 551 565 50.063335 420.436345 235.24984 2.371529337 -0.741345 202 59 4562 U3b (snR17b) U3b yes 662 366 382 35.442209 403.529461 219.485835 2.341406497 -0.739633 202 60 14224 MT_ATP9 ATP9 yes 431 256 273 34.583308 381.963806 208.273557 2.318634134 -0.592473 202 61 13741 MT_COB exon1 yes 7308 301 320 33.726788 373.202746 203.464767 2.308489215 -0.532069 202 62 9498 RUF2 3_flank no 468 45.853447 299.665543 172.759495 2.237441926 0.113307 202 63 3796 RNaseP 5_flank no 569 45.09097 294.797284 169.944127 2.230306161 0.155846 202 64 4991 snR10 5_flank/snR10 no 445 32.272924 277.210808 154.741866 2.18960783 0.160193 202 65 21415 Ser4 spliced yes 40 5 17 43.571057 344.037625 193.804341 2.287363501 -0.268175 202 66 21022 YMR079W spliced yes 40 9 26 37.216376 365.723591 201.4699835 2.304210351 -0.462846 202 67 3862 RNaseP RNaseP yes 569 276 288 39.712931 311.009715 175.361323 2.243933813 -0.007796 202 68 9000 snR17a / U3a U3a yes 690 286 303 33.179308 295.120949 164.1501285 2.215241227 0.073846 202 69 7457 snR71 5_flank no 290 35.564949 319.332184 177.4485665 2.249072495 -0.091654 202 70 15319 YAL003W intron no 466 181 197 33.366327 279.792283 156.579305 2.194734361 0.177919 202 71 9363 RUF1 RUF1 yes 750 391 410 33.359481 271.253669 152.306575 2.182718652 0.234768 202 72 21006 YML094W spliced yes 40 13 34 33.297922 285.156985 159.2274535 2.20201795 0.140808 202 73 12708 MT_ORF 8 ORF8 yes 491 286 308 30.953816 272.42964 151.691728 2.180961899 0.131442 202 74 21183 YOL047C spliced yes 40 9 28 33.108317 287.294756 160.2015365 2.204666677 0.121094 202 75 16481 YER102W intron no 460 261 277 37.526212 317.049498 177.287855 2.248678986 -0.066708 202 76 1983 Lys2 LysCTT_ii 3_flank no 273 39.748264 289.000027 164.3741455 2.215833508 0.197364 202 77 2867 Pro7 ProTGG_vi 3_flank no 303 35.29519 272.254427 153.7748085 2.186885195 0.286887 202 78 15892 YDL082W intron no 465 381 399 33.13141 295.79177 164.46159 2.216064485 0.068157 202 79 10662 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 196 214 159.685822 375.283431 267.4846265 2.427298826 0.240516 202 80 21643 copy of SH8353 no 638 35.579897 281.438608 158.5092525 2.200054618 0.225586 202 81 16904 YGL232W 5_exon no 158 1 18 33.36135 278.248027 155.8046885 2.192580522 0.187953 202 82 200 Arg2 ArgACG_ii 3_flank no 273 33.343523 343.2611 188.3023115 2.274855651 -0.299442 202 83 6317 snR42 3_flank no 551 31.010977 314.360654 172.6858155 2.237256666 -0.113008 202 84 4167 SRP 3_flank no 875 37.6376 269.316894 153.477247 2.186044 0.357668 202 85 4339 telomerase RNA telomerase yes 1501 731 750 32.980999 298.718333 165.849666 2.219714601 0.045279 202 86 7396 snR68 3_flank no 336 35.021697 340.78612 187.9039085 2.273935814 -0.274739 202 87 6825 snR52 snR52 yes 292 31 48 34.790384 305.922513 170.3564485 2.231358578 0.010143 202 88 6041 snR37 snR37 yes 586 121 139 32.312379 306.158293 169.235336 2.228491048 -0.022357 202 89 2898 Pro8 ProTGG_vii tRNA yes 305 11 29 31.97456 309.967886 170.971223 2.232923018 -0.05727 202 90 17211 YHR039C intron no 262 161 180 31.562299 320.878435 176.220367 2.246056101 -0.148135 202 91 21830 copy of SH16330 no 484 35.316435 283.264196 159.2903155 2.202189372 0.20653 202 92 6826 snR52 snR52 yes 292 36 55 36.849851 354.155279 195.502565 2.29115246 -0.37609 202 93 1979 Lys2 LysCTT_ii 3_flank no 273 34.262558 313.874044 174.068301 2.24071969 -0.059602 202 94 6311 snR42 snR42/3_flank no 551 40.951985 319.323298 180.1376415 2.255604472 -0.077074 202 95 20018 YBR089C-A spliced yes 40 5 19 37.591161 323.514556 180.5528585 2.256604369 -0.122952 202 96 4472 U3b (snR17b) 5_flank no 662 41.437727 298.480492 169.9591095 2.230344447 0.110978 202 97 4396 telomerase RNA telomerase yes 1501 1016 1037 33.398728 320.739282 177.069005 2.248142547 -0.123646 202 98 4893 snR8 3_flank no 390 31.452067 280.918346 156.1852065 2.193639896 0.108829 202 99 12440 5S rRNA NTS2 no 1420 1156 1170 49.653136 287.59375 168.623443 2.226917953 0.237431 202 100 13041 MT_COX1 ai2 no 13084 4816 4840 33.62996 345.507062 189.568511 2.277766199 -0.316883 202 101 5285 snR30 snR30 yes 801 276 292 33.689089 269.724907 151.706998 2.181005615 0.255441 202 102 10459 RUF8 RUF8 yes 1151 221 238 33.707122 289.964679 161.8359005 2.209074869 0.122779 202 103 3219 Thr1 ThrAGT 5_flank no 273 35.713951 293.692005 164.702978 2.216701452 0.121822 202 104 2593 Pro3 ProTGG_ii 5_flank no 303 39.74643 353.185792 196.466111 2.293287648 -0.357794 203 2 3645 Val2 ValAAC_ii 5_flank no 274 28.550065 300.602662 164.5763635 2.216367462 -0.125204 203 3 17067 YGR214W intron no 555 481 503 32.433914 315.046058 173.739986 2.239899782 -0.091523 203 4 14102 MT_COB bi4 no 7308 5716 5739 32.410312 322.912371 177.6613415 2.249592937 -0.152773 203 5 18947 YOL127W intron no 514 121 139 33.408807 305.024779 169.216793 2.22844346 0.000627 203 6 13046 MT_COX1 ai2 no 13084 4891 4908 30.576965 263.476442 147.0267035 2.16739622 0.156907 203 7 20033 YBR181C spliced yes 40 21 38 30.739208 264.676578 147.707893 2.169403703 0.159078 203 8 21108 YNL069C spliced yes 40 9 26 33.935573 314.009215 173.972394 2.24048034 -0.064636 203 9 14694 MT_21S 3_flank no 4639 4621 4633 65.326696 355.840774 210.583735 2.323424824 -0.218405 203 10 21253 YPL075W spliced yes 40 9 26 35.633325 343.806473 189.719899 2.278112885 -0.297813 203 11 5180 snR13 snR13 yes 324 56 72 29.903972 273.138747 151.5213595 2.180473858 0.074367 203 12 13262 MT_COX1 ai4 no 13084 8131 8153 32.204495 315.578295 173.891395 2.240278092 -0.098634 203 13 5566 snR33 snR33 yes 383 116 132 36.522819 325.001734 180.7622765 2.257107802 -0.138399 203 14 3596 Val1 ValAAC_i 5_flank no 274 29.419361 280.303077 154.861219 2.189942674 0.014503 203 15 7988 snoRNA cluster 2 snR57/intergenic no 739 176 191 36.716966 319.516978 178.116972 2.250705303 -0.090359 203 16 17848 YKR094C intron/exon no 468 401 419 32.596544 303.487916 168.04223 2.225418436 0.002919 203 17 5027 snR10 snR10 yes 445 166 182 34.692058 281.855743 158.2739005 2.199409305 0.205077 203 18 6692 snR49 5_flank/snR49 no 365 32.654626 284.349013 158.5018195 2.200034252 0.125661 203 19 13390 MT_COX1 intronic no 13084 10051 10073 30.638091 325.448153 178.043122 2.250525201 -0.195388 203 20 10007 RUF5-1 3_flank no 975 32.809302 307.57502 170.192161 2.230939553 -0.027447 203 21 8684 LSR1 / U2 RNA U2 yes 1375 61 77 30.848784 299.660644 165.254714 2.218153857 -0.03031 203 22 15335 YAL030W exon/intron no 213 41 58 33.126334 290.911925 162.0191295 2.209566294 0.098625 203 23 9913 RUF5-1 RUF5-1 yes 975 371 392 33.37632 280.421773 156.8990465 2.195620304 0.174094 203 24 15255 MT_9S 5_flank no 701 1 29 29.416526 302.367401 165.8919635 2.219825347 -0.096509 203 25 18395 YMR125W exon/intron no 422 41 57 114.00235 391.540622 252.771486 2.402728082 -0.107979 203 26 3230 Thr1 ThrAGT tRNA yes 273 6 22 34.482199 326.033695 180.257947 2.25589442 -0.152506 203 27 9817 RUF4 3_flank no 988 32.674856 288.568353 160.6216045 2.20580396 0.099188 203 28 14160 MT_COB intronic no 7308 6586 6602 42.003079 280.396147 161.199613 2.207363995 0.286849 203 29 13647 MT_ATP6 ATP6 yes 980 511 530 33.333568 313.120383 173.2269755 2.238615523 -0.065042 203 30 18802 YNL301C intron no 532 381 400 33.581008 297.461977 165.5214925 2.218854394 0.064803 203 31 14442 MT_21S 21S_rRNA3 yes 4639 841 869 33.770617 309.289338 171.5299775 2.234340031 -0.029225 203 32 10079 RUF6 RUF6 yes 1251 241 257 31.609162 301.664327 166.6367445 2.221770772 -0.017154 203 33 6880 snR56 snR56 yes 288 31 48 33.994196 278.807688 156.400942 2.194239364 0.203877 203 34 14898 MT_Ile tRNA yes 276 121 141 31.734111 302.340104 167.0371075 2.222812961 -0.017154 203 35 11081 "rRNA(18S,5.8S,25S)" 18S yes 7956 2291 2307 11080.30347 11670.17738 11375.24042 4.055960584 -0.53211 203 36 9638 RUF4 5_flank no 988 34.04196 275.251352 154.646656 2.189340533 0.228979 203 37 1674 Leu6 LeuGAG 5_flank no 282 34.011128 252.670047 143.3405875 2.15636918 0.378059 203 38 18882 YOL047C 5_exon no 163 1 17 36.264661 343.349599 189.80713 2.278312522 -0.292494 203 39 10687 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 321 338 43.088491 306.224142 174.6563165 2.242184297 0.045063 203 40 21154 YNL265C spliced yes 40 13 29 33.751221 289.892422 161.8218215 2.209037085 0.124603 203 41 18316 YML085C 5_exon no 216 21 40 38.102849 394.381291 216.24207 2.33494019 -0.66162 203 42 17296 YHR141C intron no 541 441 460 36.641425 275.376998 156.0092115 2.193150242 0.291568 203 43 20471 YGL187C spliced yes 40 17 36 39.574991 246.624937 143.099964 2.155639525 0.588432 203 44 12662 MT_15S 15S yes 1848 1681 1698 30.231702 248.151897 139.1917995 2.14361365 0.213374 203 45 1819 Leu8 LeuTAG_i 3_flank no 301 31.960593 336.28083 184.1207115 2.265102644 -0.258809 203 46 7186 snR64 5_flank/snR64 no 301 44.381355 422.804965 233.59316 2.368460122 -0.799239 203 47 20280 YDR450W spliced yes 40 13 32 33.239954 336.327006 184.78348 2.266663142 -0.242897 203 48 2778 Pro6 ProTGG_v 5_flank no 302 32.915861 307.358824 170.1373425 2.230799645 -0.024366 203 49 17506 YJL136C intron no 560 81 98 1431.868528 1341.310079 1386.589304 3.141947846 0.460301 203 50 13736 MT_COB exon1 yes 7308 226 245 32.529369 353.619645 193.074507 2.285724935 -0.384768 203 51 3045 Ser3 SerCGA 5_flank no 301 32.438917 319.966294 176.2026055 2.246012326 -0.129757 203 52 12677 MT_Trp 5_flank/tRNA no 274 76 103 31.369433 397.972955 214.671194 2.331773772 -0.718239 203 53 4583 U3b (snR17b) 3_flank no 662 30.346034 331.016451 180.6812425 2.256913068 -0.241279 203 54 143 Arg1 ArgACG_i 3_flank no 273 34.524998 343.901665 189.2133315 2.276951732 -0.301472 203 55 3822 RNaseP RNaseP yes 569 76 93 51.279394 437.119029 244.1992115 2.387744257 -0.827249 203 56 20195 YDR005C spliced yes 40 9 28 32.684878 390.077646 211.381262 2.325066486 -0.658171 203 57 1117 Gly4 GlyTCC tRNA/3_flank no 272 62 76 37.027287 320.995228 179.0112575 2.252880343 -0.102488 203 58 1894 Lys1 LysCTT_i 5_flank no 272 39.32826 403.305438 221.316849 2.345014478 -0.712913 203 59 19894 snR17A spliced yes 40 5 19 33.197335 291.968719 162.583027 2.211075205 0.094185 203 60 12510 MT_ORF6 + ORF7 (hypothetical) 5_flank no 664 46 72 34.444199 468.324222 251.3842105 2.400337996 -1.140041 203 61 7020 snR60 3_flank no 304 35.707438 333.562714 184.635076 2.26631421 -0.213108 203 62 8539 snR19 / U1 RNA U1 yes 868 191 210 31.624503 331.163421 181.393962 2.258622827 -0.22529 203 63 1556 Leu4 LeuCAA_iv 5_flank no 314 31.822192 342.256476 187.039334 2.271932947 -0.304136 203 64 3118 Ser4 SerGCT 5_flank/tRNA no 301 45.102141 317.293413 181.197777 2.258152865 -0.045834 203 65 17943 YLR128W 5_exon no 194 21 37 32.27139 314.00058 173.135985 2.238387342 -0.085388 203 66 8450 snoRNA cluster 5 snR128 yes 586 416 430 43.564208 301.05714 172.310674 2.236312181 0.093304 203 67 21166 YNL302C spliced yes 40 13 28 34.987243 305.230122 170.1086825 2.230726481 0.018079 203 68 9065 snR14 / U4 RNA 5_flank no 360 32.988666 290.060789 161.5247275 2.208239017 0.099671 203 69 11116 "rRNA(18S,5.8S,25S)" 18S yes 7956 2466 2483 33.164162 323.20305 178.183606 2.250867744 -0.145476 203 70 13655 MT_ATP6 ATP6 yes 980 631 647 33.274837 287.30288 160.2888585 2.204903336 0.12628 203 71 13039 MT_COX1 ai2 no 13084 4786 4807 35.575687 318.278839 176.927263 2.247794759 -0.082394 203 72 7013 snR60 3_flank no 304 5508.503556 3283.291046 4395.897301 3.643047538 0.728906 203 73 11051 "rRNA(18S,5.8S,25S)" 18S yes 7956 2141 2158 37.754005 282.607257 160.180631 2.20461 0.239904 203 74 20470 YGL187C spliced yes 40 13 32 33.176052 295.6645 164.420276 2.215955373 0.070355 203 75 9678 RUF4 RUF4 yes 988 166 185 35.380143 338.889175 187.134659 2.27215423 -0.258213 203 76 5471 snR32 snR32 yes 388 16 32 33.126403 315.64857 174.3874865 2.241515318 -0.087497 203 77 5086 snR11 snR11 yes 458 31 46 35.417131 305.211189 170.31416 2.231250757 0.023289 203 78 18015 YLR287C 3_exon no 530 481 497 33.240137 306.635277 169.937707 2.230289754 -0.014483 203 79 15162 MT_Val tRNA yes 276 106 125 31.066443 285.637841 158.352142 2.199623942 0.065272 203 80 20956 YML024W spliced yes 40 17 34 80.224675 321.836745 201.03071 2.303262406 0.12157 203 81 13 Ala1 AlaAGC 5_flank no 273 31.154174 271.120883 151.1375285 2.179372316 0.147879 203 82 2073 Lys4 LysTTT_ii tRNA/intron no 296 31 i11 33.389682 292.873438 163.13156 2.212537989 0.094521 203 83 8248 snoRNA cluster4 5_flank no 638 26 44 35.566472 274.178631 154.8725515 2.189974453 0.281915 203 84 17447 YIL148W exon/intron no 534 41 58 37.687588 286.116366 161.901977 2.209252152 0.208677 203 85 20661 YIL052C spliced yes 40 5 22 39.760076 311.413422 175.586749 2.244491738 -0.011312 203 86 2822 Pro7 ProTGG_vi 5_flank no 303 35.083907 316.396432 175.7401695 2.244871041 -0.069574 203 87 14860 MT_Ser2; Arg2 tRNASer yes 360 166 183 32.64297 289.75867 161.20082 2.207367247 0.09059 203 88 1046 Gly3 GlyGCC 5_flank no 271 32.372801 296.46248 164.4176405 2.215948412 0.039799 203 89 6613 snR47 3_flank no 299 32.024485 283.225266 157.6248755 2.197624757 0.112604 203 90 7850 snoRNA cluster1 snR74/intergenic no 1574 1046 1067 31.593188 310.587084 171.090136 2.233224972 -0.07135 203 91 13172 MT_COX1 intronic/exon4 no 13084 6781 6802 33.209452 295.096018 164.152735 2.215248123 0.07495 203 92 9129 snR7 U5 RNA 5_flank no 415 32.662684 298.855498 165.759091 2.219477356 0.034306 203 93 1498 Leu3 LeuCAA_iii 5_flank no 314 32.15527 293.003193 162.5792315 2.211065066 0.054369 203 94 7695 snoRNA cluster1 intergenic no 1574 271 287 45.906394 324.445159 185.1757765 2.267584174 -0.100569 203 95 17437 YIL133C intron no 390 221 237 71.728407 441.759478 256.7439425 2.409500206 -0.6808 203 96 17170 YHR016C 3_exon no 268 241 260 33.280178 308.574852 170.927515 2.232811979 -0.029567 203 97 12850 MT_COX1 ai1 no 13084 1951 1970 33.232158 315.963139 174.5976485 2.24203839 -0.088639 203 98 1646 Leu5 LeuCAA_v tRNA yes 315 54 71 36.254111 291.401604 163.8278575 2.214387752 0.147386 203 99 2478 Phe5 PheGAA_v 3_flank no 291 39.334239 310.99484 175.1645395 2.243446192 -0.008537 203 100 2690 Pro4 ProTGG_iii 3_flank no 302 33.414455 302.963391 168.188923 2.22579739 0.017455 203 101 18269 YML056C intron no 508 261 277 34.462134 289.43746 161.949797 2.209380408 0.143111 203 102 17425 YIL111W 3_exon no 188 161 173 92.62411 319.489454 206.056782 2.313986913 0.214612 203 103 18519 YMR225C 5_exon no 247 1 20 33.429361 344.967397 189.198379 2.276917411 -0.313061 203 104 454 Asp1 AspGTC_i 3_flank no 271 35.383966 279.79371 157.588838 2.197525453 0.237786 204 2 15511 YBR048W intron no 611 181 198 30.26647 302.351917 166.3091935 2.220916257 -0.066671 204 3 5940 snR36 snR36 yes 555 156 174 30.289037 309.821158 170.0550975 2.230589655 -0.110824 204 4 9001 snR17a / U3a U3a yes 690 291 306 40.078125 289.374066 164.7260955 2.216762404 0.194505 204 5 8624 snR19 / U1 RNA U1 yes 868 616 632 44.105401 303.293547 173.699474 2.239798503 0.074762 204 6 21721 copy of SH11711 no 7956 2278.715426 3055.209438 2666.962432 3.426016898 -0.243743 204 7 4035 SRP SRP yes 875 66 82 42.660953 348.919523 195.790238 2.291791034 -0.310555 204 8 8243 snoRNA cluster4 5_flank no 638 1 20 41.047877 278.992545 160.020211 2.204174839 0.29877 204 9 14712 MT_Cys; His 5_flank no 456 1 25 33.431993 290.042338 161.7371655 2.208809828 0.113728 204 10 7738 snoRNA cluster1 intergenic no 1574 486 505 29.72142 313.19926 171.46034 2.234163681 -0.150545 204 11 12279 5S rRNA NTS2 no 1420 351 367 34.040074 285.72467 159.882372 2.203800583 0.160164 204 12 6318 snR42 3_flank no 551 32.202155 307.050586 169.6263705 2.22949337 -0.030964 204 13 9439 RUF2 RUF2 yes 468 36 54 34.37131 328.264583 181.3179465 2.258440792 -0.171854 204 14 4785 snR5 snR5 yes 404 96 115 34.411595 333.833423 184.122509 2.265106884 -0.21875 204 15 15440 YBL072C 3_exon no 408 361 378 32.340393 283.388521 157.864457 2.19828436 0.121794 204 16 6468 snR45 3_flank no 372 36.418791 311.84627 174.1325305 2.240879911 -0.023207 204 17 17520 YJL136C intron no 560 361 378 32.283756 321.129162 176.706459 2.247252424 -0.140708 204 18 6647 snR48 snR48 yes 313 61 78 32.288793 323.202759 177.745776 2.249799289 -0.15655 204 19 11894 "rRNA(18S,5.8S,25S)" 25S yes 7956 6356 6373 610.190755 1461.20309 1035.696923 3.015232686 -0.767823 204 20 835 Glu2 GluTTC_i 5_flank no 272 32.419744 304.98799 168.703867 2.227125038 -0.011518 204 21 4602 snR3 5_flank no 395 32.5577 316.060488 174.309094 2.241320046 -0.09789 204 22 17182 YHR021C intron no 650 221 239 34.838475 335.20418 185.0213275 2.267221793 -0.229073 204 23 1366 Leu1 LeuCAA_i 5_flank no 315 35.120223 348.778773 191.949498 2.283186981 -0.339257 204 24 1228 Ile1 IleAAT 3_flank no 274 33.353355 344.912752 189.1330535 2.276767434 -0.312827 204 25 8691 LSR1 / U2 RNA U2 yes 1375 96 115 33.743744 327.211195 180.4774695 2.256422993 -0.168761 204 26 19914 YAL003W spliced yes 40 13 29 31.996381 326.794566 179.3954735 2.253811481 -0.187629 204 27 20434 YGL076C spliced yes 40 9 21 42.300121 333.472089 187.886105 2.273894663 -0.191383 204 28 6831 snR52 snR52 yes 292 61 80 32.763761 335.745212 184.2544865 2.265418072 -0.244593 204 29 18835 YNL302C intron no 651 521 537 37.575365 318.032466 177.8039155 2.249941321 -0.075237 204 30 6232 snR42 5_flank no 551 35.608942 343.734287 189.6716145 2.278002341 -0.297289 204 31 11541 "rRNA(18S,5.8S,25S)" 25S yes 7956 4591 4608 27006.75009 17968.61818 22487.68414 4.351944733 -0.160707 204 32 6508 snR46 snR46 yes 397 31 47 35.982485 328.277475 182.12998 2.26038144 -0.167781 204 33 11978 "rRNA(18S,5.8S,25S)" 25S yes 7956 6776 6792 293.115131 616.847799 454.981465 2.657993705 -0.156042 204 34 3511 Tyr1 TyrGTA_i 3_flank no 289 33.850635 304.732585 169.29161 2.228635435 0.008436 204 35 14478 MT_21S 21S_rRNA3 yes 4639 1381 1397 40.771529 338.973979 189.872754 2.27846265 -0.241511 204 36 9348 RUF1 RUF1 yes 750 316 335 33.863449 319.147344 176.5053965 2.246757988 -0.105628 204 37 6515 snR46 snR46 yes 397 66 84 33.835705 331.463073 182.649389 2.261618224 -0.200381 204 38 7861 snoRNA cluster1 intergenic no 1574 1101 1122 36.082516 305.544874 170.813695 2.232522687 0.028295 204 39 16557 YER133W intron no 625 301 313 33.719957 275.623937 154.671947 2.189411552 0.216564 204 40 8181 snoRNA cluster 3; snR70 yes 743 416 432 35.886688 362.173165 199.0299265 2.298918383 -0.441269 204 41 3573 Tyr2 TyrGTA_ii 3_flank no 289 36.827959 327.050859 181.939409 2.25992678 -0.155201 204 42 12836 MT_COX1 ai1 no 13084 1741 1762 35.404321 323.41236 179.4083405 2.253842629 -0.127541 204 43 134 Arg1 ArgACG_i tRNA yes 273 46 61 37.242315 293.730298 165.4863065 2.218762063 0.138851 204 44 7105 snR63 snR63 yes 455 31 48 34.544893 337.281808 185.9133505 2.269310578 -0.247111 204 45 3694 Val3 ValCAC 5_flank no 273 40.539333 306.010331 173.274832 2.238735486 0.039364 204 46 300 Arg4 ArgCCT 3_flank no 272 33.54273 419.758947 226.6508385 2.35535733 -0.855636 204 47 6602 snR47 3_flank no 299 35.220152 326.722766 180.971459 2.257610088 -0.156472 204 48 7416 snR69 5_flank/snR69 no 301 32.778963 315.506887 174.142925 2.240905835 -0.090754 204 49 761 Gln4 GlnTTG_iii 3_flank no 272 47.088692 274.619488 160.85409 2.206432108 0.3565 204 50 15055 MT_COX 2; ORF1 ORF1exon1 yes 2427 1426 1452 31.377276 327.225318 179.301297 2.253583431 -0.198975 204 51 7494 snR71 snR71/3_flank no 290 34.392202 324.611266 179.501734 2.254068648 -0.141165 204 52 10120 RUF6 RUF6 yes 1251 446 462 32.307857 299.795997 166.051927 2.22024392 0.017115 204 53 10654 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 156 174 82.944492 359.174745 221.0596185 2.344509416 -0.1196 204 54 20541 YGR214W spliced yes 40 1 17 32.360049 271.417069 151.888559 2.181525062 0.201897 204 55 4998 snR10 snR10 yes 445 21 37 34.506652 272.21683 153.361741 2.18571703 0.263547 204 56 5354 snR30 3_flank no 801 32.561239 268.760744 150.6609915 2.178000821 0.226477 204 57 21680 copy of SH10030 no 1251 32.71626 240.623099 136.6696795 2.135672176 0.382802 204 58 13620 MT_ATP6 ATP6 yes 980 106 130 30.803012 265.258955 148.0309835 2.170352625 0.159373 204 59 11486 "rRNA(18S,5.8S,25S)" 25S yes 7956 4316 4332 312.591776 785.762092 549.176934 2.739712288 -0.512124 204 60 17165 YHR016C intron no 268 141 155 43.874391 308.969746 176.4220685 2.24655291 0.023153 204 61 6572 snR47 5_flank no 299 53.736361 338.02142 195.8788905 2.291987635 -0.164366 204 62 15733 YBR230C intron no 197 121 138 33.621037 269.093036 151.3570365 2.180002616 0.257648 204 63 11337 "rRNA(18S,5.8S,25S)" 25S yes 7956 3571 3584 38.099633 282.778198 160.4389155 2.205309718 0.242183 204 64 4739 snR4 3_flank no 386 42.655589 288.82707 165.7413295 2.219430818 0.205482 204 65 15625 YBR181C intron no 452 281 303 32.055354 327.894845 179.9750995 2.255212422 -0.195173 204 66 18515 YMR201C intron no 184 101 120 32.303128 326.375565 179.3393465 2.253675583 -0.180508 204 67 2351 Phe3 PheGAA_iii tRNA/3_flank no 291 30.363344 304.901531 167.6324375 2.22435806 -0.078795 204 68 15617 YBR181C intron no 452 121 138 35.053216 298.189002 166.621109 2.221730021 0.076536 204 69 5184 snR13 snR13 yes 324 76 92 42.023016 354.387827 198.2054215 2.29711553 -0.355306 204 70 54 Ala2 AlaTGC 5_flank no 273 30.950461 298.670348 164.8104045 2.216984625 -0.020779 204 71 13794 MT_COB intronic no 7308 1096 1124 33.278536 339.464803 186.3716695 2.270379896 -0.268547 204 72 18141 YLR406C intron no 449 201 217 37.810273 326.486202 182.1482375 2.260424973 -0.147969 204 73 10170 RUF6 RUF6 yes 1251 696 708 35.516248 283.252891 159.3845695 2.202446274 0.208965 204 74 12022 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6996 7014 35.468917 340.738947 188.103932 2.274397874 -0.273194 204 75 13242 MT_COX1 ai4 no 13084 7831 7852 33.18528 331.606883 182.3960815 2.261015504 -0.20865 204 76 7819 snoRNA cluster1 intergenic no 1574 891 907 34.314593 304.395052 169.3548225 2.228797568 0.016811 204 77 19283 YPL143W intron no 625 541 560 35.48444 307.975442 171.729941 2.234846021 0.001793 204 78 5476 snR32 snR32 yes 388 41 60 33.296589 299.677757 166.487173 2.221380779 0.04294 204 79 14565 MT_21S 21S_rRNA3 yes 4639 2686 2707 33.369427 301.65385 167.5116385 2.224044987 0.027602 204 80 7268 snR65 3_flank no 300 33.422509 266.691402 150.0569555 2.176256131 0.26797 204 81 11500 "rRNA(18S,5.8S,25S)" 25S yes 7956 4386 4401 53.928386 272.176702 163.052544 2.212327579 0.402704 204 82 17450 YIL148W intron no 534 101 120 33.396135 308.267008 170.8315715 2.232568136 -0.02566 204 83 1451 Leu2 LeuCAA_ii tRNA/intron no 314 25 i4 35.568425 295.614905 165.591665 2.219038473 0.104003 204 84 5723 snR34 snR34/3_flank no 750 33.184459 319.086838 176.1356485 2.245847263 -0.113546 204 85 9527 RUF3 RUF3 yes 631 21 37 35.273004 285.041153 160.1570785 2.204546138 0.190566 204 86 4156 SRP SRP/3_flank no 875 35.08353 288.902406 161.992968 2.209496163 0.155083 204 87 10281 RUF7 RUF7 yes 700 16 33 37.070163 314.606554 175.8383585 2.245113621 -0.046212 204 88 7862 snoRNA cluster1 intergenic no 1574 1106 1125 32.366462 328.018837 180.1926495 2.255737071 -0.192109 204 89 16112 YDR064W intron no 639 161 176 34.185614 273.423926 153.80477 2.186969805 0.245641 204 90 968 Gly1 GlyCCC_i 3_flank no 272 38.012048 274.555921 156.2839845 2.193914475 0.314153 204 91 8344 snoRNA cluster4 snR53 yes 638 506 527 326.017611 3799.854824 2062.936218 3.314485801 -3.111549 204 92 2912 Pro8 ProTGG_vii tRNA yes 305 49 63 40.950672 221.409097 131.1798845 2.117867244 0.822696 204 93 6818 snR52 5_flank/snR52 no 292 32.120675 309.658028 170.8893515 2.232715002 -0.05291 204 94 13301 MT_COX1 ai5a no 13084 8716 8740 33.707853 367.534919 200.621386 2.302377226 -0.489361 204 95 15737 YCR028C 5_exon no 183 1 18 31.384427 306.832122 169.1082745 2.228164858 -0.055878 204 96 16763 YGL087C intron/exon no 185 121 138 37.157779 294.467151 165.812465 2.219617176 0.131718 204 97 2679 Pro4 ProTGG_iii intron/tRNA no 302 i25 46 56.977379 306.755993 181.866686 2.259753153 0.104258 204 98 20806 YKL180W spliced yes 40 17 33 34.098373 329.745627 181.922 2.259885222 -0.18516 204 99 21122 YNL112W spliced yes 40 13 29 37.116468 323.820524 180.468496 2.256401399 -0.126753 204 100 3777 Val4 ValTAC 3_flank no 274 33.184512 317.319701 175.2521065 2.243663247 -0.099821 204 101 19174 YPL079W intron no 521 161 178 33.196904 270.287973 151.7424385 2.181107059 0.236233 204 102 2224 Phe1 PheGAA_i 5_flank/tRNA no 292 35.167336 282.975871 159.0716035 2.201592659 0.207295 204 103 3003 Ser2 SerAGA_ii 5_flank no 282 39.114711 337.40398 188.2593455 2.274756544 -0.234686 204 104 21058 YMR194W spliced yes 40 9 25 35.036194 332.008905 183.5225495 2.263689434 -0.201795 205 2 19230 YPL090C intron no 494 161 183 30.86458 300.218209 165.5413945 2.218906609 -0.033198 205 3 1651 Leu5 LeuCAA_v 3_flank no 315 31.926142 329.653952 180.790047 2.257174518 -0.210069 205 4 11145 "rRNA(18S,5.8S,25S)" 18S yes 7956 2611 2629 911.411261 3769.150472 2340.280867 3.369267982 -1.759976 205 5 6751 snR50 5_flank no 290 42.002742 307.736035 174.8693885 2.242713791 0.027919 205 6 375 Asn1 AsnGTT 5_flank no 274 32.554468 292.082449 162.3184585 2.21036791 0.073048 205 7 14956 MT_Met 3_flank no 276 211 232 30.90604 297.819017 164.3625285 2.215802814 -0.017023 205 8 2047 Lys4 LysTTT_ii 5_flank no 296 31.231759 271.215518 151.2236385 2.179619683 0.151279 205 9 3987 RNase MRP 3_flank no 540 31.550634 287.810494 159.680564 2.203252058 0.067469 205 10 15505 YBR048W intron no 611 61 78 31.829011 319.298427 175.563719 2.244434772 -0.132452 205 11 21232 YOR293W spliced yes 40 1 17 36.114267 274.172014 155.1431405 2.190732578 0.296405 205 12 5368 snR31 5_flank no 425 31.134625 234.723857 132.929241 2.123620525 0.32752 205 13 9112 snR14 / U4 RNA 3_flank no 360 42.441607 296.947977 169.694792 2.229668514 0.127546 205 14 2483 Pro1 ProAGG 5_flank no 272 32.146391 320.264907 176.205649 2.246019827 -0.135813 205 15 8606 snR19 / U1 RNA U1 yes 868 526 543 32.065337 316.578707 174.322022 2.241352255 -0.108249 205 16 6293 snR42 snR42 yes 551 246 260 42.165855 316.06997 179.1179125 2.253139019 -0.044825 205 17 16313 YDR471W 5_exon no 484 21 39 31.908134 300.943039 166.4255865 2.221220096 -0.002916 205 18 11177 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2771 2786 46.11293 308.095129 177.1040295 2.248228442 0.038016 205 19 19774 Negative Control no 60 NA #VALUE! 33.927385 301.710927 167.819156 2.224841533 0.034001 205 20 7082 snR63 5_flank no 455 31.975388 290.269447 161.1224175 2.207155969 0.06577 205 21 13446 MT_COX1 intronic no 13084 10891 10912 32.11642 320.801471 176.4589455 2.24664368 -0.140336 205 22 17416 YIL106W 3_exon no 185 161 178 32.327887 296.300549 164.314218 2.215675144 0.039356 205 23 10982 "rRNA(18S,5.8S,25S)" 18S yes 7956 1796 1816 30.541471 312.599375 171.570423 2.234442422 -0.118594 205 24 4435 telomerase RNA telomerase yes 1501 1211 1228 32.971168 269.426711 151.1989395 2.179548745 0.234985 205 25 1795 Leu8 LeuTAG_i tRNA yes 301 1 13 29770.39193 19156.10991 24463.25092 4.38851417 -0.147673 205 26 20575 YHR012W spliced yes 40 13 29 38.141042 303.889485 171.0152635 2.233034874 0.053228 205 27 11529 "rRNA(18S,5.8S,25S)" 25S yes 7956 4531 4549 2700.241614 5254.367719 3977.304667 3.59958886 -0.925099 205 28 249 Arg3 ArgCCG 3_flank no 272 36.908932 316.271562 176.590247 2.246966714 -0.061358 205 29 14091 MT_COB bi4 no 7308 5551 5568 32.837623 324.616831 178.727227 2.252190717 -0.16036 205 30 5340 snR30 snR30 yes 801 551 567 37.609105 304.342784 170.9759445 2.232935012 0.047781 205 31 2616 Pro3 ProTGG_ii tRNA/intron no 303 32 i9 42.383814 297.146723 169.7652685 2.229848845 0.125552 205 32 13997 MT_COB intronic no 7308 4141 4160 31.21427 306.434514 168.824392 2.227435194 -0.059168 205 33 18073 YLR344W intron no 547 221 235 42.714923 314.215554 178.4652385 2.251553637 -0.026842 205 34 16738 YGL076C intron no 559 181 198 33.648459 324.370933 179.009696 2.252876555 -0.148387 205 35 7211 snR64 3_flank no 301 33.673187 327.210799 180.441993 2.256337615 -0.169625 205 36 11416 "rRNA(18S,5.8S,25S)" 25S yes 7956 3966 3983 35.954081 330.713915 183.333998 2.263243009 -0.188514 205 37 20552 YGR225W spliced yes 40 21 38 35.929966 329.623816 182.776891 2.261921286 -0.17935 205 38 20826 YKR094C spliced yes 40 1 18 35.890828 319.991482 177.941155 2.250276405 -0.096584 205 39 15390 YBL040C intron no 197 81 93 44.96087 293.370727 169.1657985 2.228312563 0.16874 205 40 6228 snR42 5_flank no 551 33.463482 333.156276 183.309879 2.263185871 -0.216713 205 41 21510 copy of SH2855 no 303 35.567768 361.956541 198.7621545 2.298333696 -0.440899 205 42 8727 LSR1 / U2 RNA U2 yes 1375 276 293 33.062892 374.448699 203.7557955 2.30910997 -0.543197 205 43 447 Asp1 AspGTC_i tRNA yes 271 57 69 37.160397 314.095371 175.627884 2.244593469 -0.041446 205 44 6342 snR43 5_flank no 409 32.28805 331.860736 182.074393 2.260248871 -0.22189 205 45 10545 RUF8 RUF8 yes 1151 651 673 31.810733 329.20848 180.5096065 2.256500319 -0.208226 205 46 12409 5S rRNA NTS2 no 1420 1001 1017 37.72446 300.167208 168.945834 2.227747487 0.086661 205 47 3477 Tyr1 TyrGTA_i 5_flank no 289 37.221027 290.839242 164.0301345 2.214923641 0.163059 205 48 15343 YBL018C 5_exon no 175 1 17 149.244035 435.895731 292.569883 2.466229618 -0.124003 205 49 11692 "rRNA(18S,5.8S,25S)" 25S yes 7956 5346 5363 109.589965 476.56675 293.0783575 2.466983749 -0.557633 205 50 18556 YMR292W 5_exon no 182 1 18 34.327934 257.409727 145.8688305 2.163962501 0.361101 205 51 16626 YFL039C intron no 408 261 279 30.150551 273.773478 151.9620145 2.181735042 0.084036 205 52 12001 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6891 6908 44.478471 266.715755 155.597113 2.192001535 0.431837 205 53 12493 MT_tRNA Pro 5_flank no 272 46 74 36.263819 320.269872 178.2668455 2.25107058 -0.098069 205 54 3226 Thr1 ThrAGT 5_flank/tRNA no 273 48.653536 264.604292 156.628914 2.194871937 0.46306 205 55 12221 5S rRNA NTS2 no 1420 61 80 30.218079 279.243889 154.730984 2.189577287 0.061166 205 56 20761 YJR145C spliced yes 40 1 16 371.046087 528.296427 449.671257 2.652895128 0.379782 205 57 11478 "rRNA(18S,5.8S,25S)" 25S yes 7956 4276 4291 356.596107 440.111346 398.3537265 2.600268884 0.667612 205 58 16013 YDL137W intron no 432 341 362 30.668577 304.58289 167.6257335 2.224340691 -0.066425 205 59 20194 YDR005C spliced yes 40 5 24 32.960834 282.278572 157.619703 2.197610505 0.148862 205 60 14577 MT_21S intronic no 4639 2866 2887 33.161777 330.55517 181.8584735 2.259733541 -0.201093 205 61 12817 MT_COX1 ai1 no 13084 1456 1475 33.342635 312.692034 173.0173345 2.238089617 -0.061546 205 62 11310 "rRNA(18S,5.8S,25S)" ITS2/25S no 7956 3436 3454 31.37623 277.644707 154.5104685 2.188957909 0.127252 205 63 3730 Val3 ValCAC 3_flank no 273 33.663021 321.098012 177.3805165 2.248905915 -0.123145 205 64 4015 SRP 5_flank no 875 31.690685 286.373663 159.032174 2.201484996 0.081309 205 65 2023 Lys3 LysTTT_i tRNA yes 296 38 52 42.730541 289.945258 166.3378995 2.220991213 0.194846 205 66 8658 LSR1 / U2 RNA 5_flank no 1375 29.966323 281.828958 155.8976405 2.192839542 0.035897 205 67 3411 Thr4 ThrTGT_ii 3_flank no 272 32.427254 324.974831 178.7010425 2.252127086 -0.168291 205 68 6553 snR46 3_flank no 397 30.498583 313.767713 172.133148 2.235864511 -0.12693 205 69 20530 YGR148C spliced yes 40 1 20 32.967022 295.543883 164.2554525 2.215519795 0.064507 205 70 18971 YOR096W intron no 501 101 117 39.904091 301.959084 170.9315875 2.232822326 0.075159 205 71 17563 YJL189W intron no 486 261 280 33.254006 311.501629 172.3778175 2.236481378 -0.053222 205 72 6840 snR52 3_flank no 292 35.538754 295.625615 165.5821845 2.219013608 0.103568 205 73 16526 YER131W intron no 461 141 158 37.772674 318.602213 178.1874435 2.250877097 -0.07976 205 74 8744 LSR1 / U2 RNA U2 yes 1375 361 378 33.215367 280.83023 157.0227985 2.195962713 0.166366 205 75 14021 MT_COB exon4 yes 7308 4501 4520 33.185264 284.615364 158.900314 2.201124755 0.140769 205 76 14574 MT_21S intronic no 4639 2821 2833 37.692054 262.776305 150.2341795 2.176768749 0.419025 205 77 3597 Val1 ValAAC_i 5_flank/tRNA no 274 33.219646 304.439357 168.8295015 2.227448338 0.003024 205 78 15679 YBR191W intron no 488 221 240 33.277726 285.589134 159.43343 2.202579389 0.137386 205 79 15022 MT_COX 2; ORF1 ORF1exon1 yes 2427 931 955 31.080204 297.182606 164.131405 2.215191687 -0.007217 205 80 2915 Pro8 ProTGG_vii tRNA/3_flank no 305 42.456488 253.358127 147.9073075 2.169989631 0.558513 205 81 7758 snoRNA cluster1 snR76 yes 1574 586 605 34.519804 290.822531 162.6711675 2.211310584 0.132005 205 82 13318 MT_COX1 ai5a no 13084 8971 8993 31.085083 277.770919 154.428001 2.18872605 0.112162 205 83 11437 "rRNA(18S,5.8S,25S)" 25S yes 7956 4071 4084 73.234469 314.531772 193.8831205 2.287540001 0.133819 205 84 18605 YNL069C intron no 549 261 280 33.125388 302.633668 167.879528 2.22499774 0.016549 205 85 2189 Met2 MetCAT_ii 3_flank no 272 32.966988 305.957252 169.46212 2.229072635 -0.012429 205 86 15651 YBR189W intron no 513 161 178 32.780493 308.980106 170.8802995 2.232691997 -0.039074 205 87 7463 snR71 5_flank no 290 34.764604 281.039857 157.9022305 2.198388265 0.212596 205 88 10627 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 21 39 34.467116 318.754868 176.610992 2.24701773 -0.095271 205 89 18452 YMR143W exon/intron no 644 41 60 34.093821 316.418856 175.2563385 2.243673734 -0.081602 205 90 3309 Thr2 ThrCGT 3_flank no 272 29.36948 289.952548 159.661014 2.203198883 -0.033203 205 91 1347 Ile3 IleTAT_ii tRNA yes 333 56 68 50.037554 287.409989 168.7237715 2.227176275 0.240554 205 92 15461 YBL087C intron no 604 381 397 93.847135 296.783136 195.3151355 2.290735899 0.394588 205 93 18420 YMR133W intron no 225 121 140 36.182059 349.10221 192.6421345 2.284751282 -0.339128 205 94 6953 snR58 3_flank no 296 31.675523 310.873439 171.274481 2.23369266 -0.070329 205 95 4786 snR5 snR5 yes 404 101 118 31.3584 286.556689 158.9575445 2.201281145 0.069126 205 96 21331 YPR043W spliced yes 40 17 36 39.084516 339.002748 189.043632 2.276562053 -0.247763 205 97 14552 MT_21S 21S_rRNA3 yes 4639 2491 2517 33.015784 308.385849 170.7008165 2.232235598 -0.031355 205 98 2630 Pro3 ProTGG_ii tRNA/3_flank no 303 34.941434 297.401585 166.1715095 2.220556565 0.081748 205 99 21544 copy of SH4253 no 1501 32.953786 300.862708 166.908247 2.222477796 0.028902 205 100 20130 YDL082W spliced yes 40 17 33 30.967065 309.28689 170.1269775 2.230773186 -0.084529 205 101 14852 MT_Ser2; Arg2 5_flank no 360 46 74 31.915106 306.078889 168.9969975 2.227878989 -0.033844 205 102 20809 YKL186C spliced yes 40 5 22 34.809017 313.877564 174.3432905 2.241405238 -0.053077 205 103 2730 Pro5 ProTGG_iv tRNA/intron no 303 32 i9 36.697123 260.439342 148.5682325 2.171925957 0.409248 205 104 17781 YKL180W intron no 406 281 298 32.638384 264.197245 148.4178145 2.171486032 0.25464 206 2 12958 MT_COX1 ai2 no 13084 3571 3587 42.854748 324.878403 183.8665755 2.264502787 -0.117914 206 3 6064 snR37 snR37 yes 586 236 252 34.414092 273.961959 154.1880255 2.188050647 0.248977 206 4 16296 YDR450W intron no 535 201 220 33.716926 320.842723 177.2798245 2.248659313 -0.120517 206 5 12971 MT_COX1 ai2 no 13084 3766 3786 32.116219 288.095595 160.105907 2.204407355 0.0842 206 6 9973 RUF5-1 RUF5-1 yes 975 671 692 30.53893 299.198238 164.868584 2.217137908 -0.038008 206 7 16899 YGL226C intron no 249 141 162 30.91653 306.062825 168.4896775 2.226573299 -0.066941 206 8 15499 YBL092W intron no 433 361 383 37.268911 301.243013 169.255962 2.228543976 0.075555 206 9 12737 MT_COX1 exon1/ai1 no 13084 256 274 33.628132 322.357872 177.993002 2.250402928 -0.133252 206 10 11707 "rRNA(18S,5.8S,25S)" 25S yes 7956 5421 5434 121.711111 385.648501 253.679806 2.404285897 -0.02728 206 11 7910 snoRNA cluster1 intergenic no 1574 1346 1365 34.055158 342.974482 188.51482 2.275345498 -0.29518 206 12 18394 YMR125W 5_exon no 422 21 42 32.064661 324.652486 178.3585735 2.25129399 -0.170494 206 13 6725 snR49 snR49/3_flank no 365 32.019416 283.181001 157.6002085 2.197556788 0.112727 206 14 6556 snR46 3_flank no 397 38.006732 317.587992 177.797362 2.249925313 -0.070288 206 15 20704 YJL001W spliced yes 40 25 40 35.818202 312.51187 174.165036 2.240960974 -0.030683 206 16 4619 snR3 snR3 yes 395 11 28 39.702622 311.082428 175.392525 2.24401108 -0.008473 206 17 4679 snR4 5_flank no 386 33.539478 328.668181 181.1038295 2.257927634 -0.182255 206 18 14500 MT_21S 21S_rRNA3 yes 4639 1711 1725 2263.68131 2173.620982 2218.651146 3.34608902 0.296026 206 19 995 Gly2 GlyCCC_ii 5_flank no 272 33.47269 281.585533 157.5291115 2.197360823 0.16948 206 20 1594 Leu4 LeuCAA_iv 3_flank no 314 110.599723 361.805067 236.202395 2.373284297 0.043513 206 21 21805 copy of SH15280 no 701 29.66991 302.757125 166.2135175 2.22066634 -0.089925 206 22 7870 snoRNA cluster1 snR73 yes 1574 1146 1161 58.440708 297.158393 177.7995505 2.249930659 0.194069 206 23 18456 YMR143W intron no 644 121 137 42.496757 274.467552 158.4821545 2.199980367 0.347626 206 24 544 Cys1 CysGCA tRNA yes 272 21 34 51.357275 298.051689 174.704482 2.242304047 0.150973 206 25 15943 YDL125C exon/intron no 211 41 62 33.065314 327.266189 180.1657515 2.255672238 -0.177586 206 26 20381 YFL034C-A spliced yes 40 13 28 54.96419 274.754182 164.859186 2.217113151 0.382496 206 27 10676 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 266 283 34.019162 251.753596 142.886379 2.154990831 0.383265 206 28 3439 Trp1 TrpCCA tRNA yes 306 27 i7 34.457176 262.453396 148.455286 2.171595666 0.329299 206 29 16369 YER003C 5_exon no 193 1 20 37.048482 340.590861 188.8196715 2.276047238 -0.268001 206 30 12756 MT_COX1 ai1 no 13084 541 562 32.90462 303.781665 168.3431425 2.22619543 0.004423 206 31 20209 YDR059C spliced yes 40 17 29 37.615023 295.43527 166.5251465 2.221479824 0.12867 206 32 6762 snR50 5_flank/snR50 no 290 31.01966 318.088288 174.553974 2.241929741 -0.13442 206 33 6644 snR48 snR48 yes 313 46 63 33.376354 311.334355 172.3553545 2.23642478 -0.050374 206 34 20698 YJL001W spliced yes 40 1 17 33.435295 269.353952 151.3946235 2.180110452 0.250079 206 35 15375 YBL027W intron no 484 261 277 33.458933 284.085254 158.7720935 2.200774171 0.152778 206 36 18081 YLR344W intron no 547 381 398 33.456857 271.641043 152.54895 2.183409223 0.235184 206 37 15961 YDL130W intron no 401 201 218 35.708618 326.855137 181.2818775 2.25835439 -0.156346 206 38 9920 RUF5-1 RUF5-1 yes 975 406 425 31.150682 283.600324 157.375503 2.196937131 0.08128 206 39 20557 YHL001W spliced yes 40 17 34 37.911352 354.177509 196.0444305 2.292354509 -0.372218 206 40 13626 MT_ATP6 ATP6 yes 980 196 218 31.056534 292.668139 161.8623365 2.209145805 0.020171 206 41 3800 RNaseP 5_flank no 569 392.05816 1072.987213 732.5226865 2.864821079 -0.786202 206 42 9444 RUF2 RUF2 yes 468 61 73 125.45395 381.614172 253.534061 2.404036313 0.017596 206 43 13862 MT_COB bi2 no 7308 2116 2140 30.443216 310.03998 170.241598 2.231065687 -0.106822 206 44 14819 MT_Lys; Arg1; Gly intergenic no 682 466 488 32.244444 275.551579 153.8980115 2.187233008 0.170325 206 45 9895 RUF5-1 RUF5-1 yes 975 281 297 31.774968 250.317963 141.0464655 2.149362208 0.284843 206 46 18023 YLR306W intron no 234 121 135 67.648654 326.903866 197.27626 2.295074826 0.005411 206 47 7585 snR189 5_flank/snR189 no 389 30.866999 301.677241 166.27212 2.220819434 -0.042042 206 48 8789 LSR1 / U2 RNA U2 yes 1375 586 602 59.678996 419.149008 239.414002 2.379149546 -0.656107 206 49 2685 Pro4 ProTGG_iii tRNA/3_flank no 302 50.892104 288.859569 169.8758365 2.230131608 0.231433 206 50 9966 RUF5-1 RUF5-1 yes 975 636 653 32.145768 291.98692 162.066344 2.209692835 0.060458 206 51 21124 YNL112W spliced yes 40 21 40 30.008337 302.933924 166.4711305 2.221338929 -0.079156 206 52 17431 YIL133C intron no 390 101 117 31.992641 310.875892 171.4342665 2.234097634 -0.064264 206 53 13282 MT_COX1 exon5a yes 13084 8431 8450 31.974589 319.405512 175.6900505 2.244747168 -0.131391 206 54 285 Arg4 ArgCCT tRNA yes 272 21 33 82.125903 303.012578 192.5692405 2.284586918 0.277544 206 55 9617 RUF3 3_flank no 631 30.017023 313.025411 171.521217 2.234317849 -0.139188 206 56 11115 "rRNA(18S,5.8S,25S)" 18S yes 7956 2461 2478 1218.796808 2897.642796 2058.219802 3.313491752 -0.965012 206 57 3907 RNase MRP 5_flank no 540 34.417539 262.83387 148.6257045 2.172093926 0.325429 206 58 7086 snR63 5_flank no 455 32.579018 266.482488 149.530753 2.17473052 0.240343 206 59 5603 snR34 5_flank no 750 36.997227 314.656324 175.8267755 2.245085012 -0.046833 206 60 20250 YDR381C-A spliced yes 40 13 34 30.942081 342.248138 186.5951095 2.270900257 -0.315689 206 61 7810 snoRNA cluster1 intergenic no 1574 846 865 31.126912 348.966662 190.046787 2.278860532 -0.361266 206 62 21785 copy of SH14440 no 4639 33.40688 333.046538 183.226709 2.262988781 -0.2166 206 63 10408 RUF8 5_flank no 1151 33.562025 296.762264 165.1621445 2.217910513 0.070389 206 64 5063 snR11 5_flank no 458 33.733465 313.478584 173.6060245 2.239564792 -0.06293 206 65 20132 YDL083C spliced yes 40 1 13 95.549014 283.97362 189.761317 2.278207686 0.507766 206 66 7420 snR69 snR69 yes 301 1 17 69.252322 321.601067 195.4266945 2.290983886 0.055565 206 67 6848 snR52 3_flank no 292 32.350709 273.124078 152.7373935 2.183945375 0.190052 206 68 11402 "rRNA(18S,5.8S,25S)" 25S yes 7956 3896 3911 37.094294 265.574575 151.3344345 2.179937758 0.384539 206 69 10571 RUF8 RUF8 yes 1151 781 795 34.053782 255.17989 144.616836 2.160218856 0.366844 206 70 2617 Pro3 ProTGG_ii tRNA/intron no 303 37 i16 33.138729 276.946804 155.0427665 2.190451509 0.189592 206 71 1073 Gly3 GlyGCC 3_flank no 271 30.995136 299.60122 165.298178 2.218268067 -0.025003 206 72 2494 Pro1 ProAGG 5_flank no 272 50.254536 273.678857 161.9666965 2.209425724 0.375179 206 73 15117 MT_COX 2; ORF1 3_flank no 2427 2356 2377 35.492029 332.666332 184.0791805 2.265004672 -0.206142 206 74 16341 YDR500C intron no 439 101 113 117.362565 409.856344 263.6094545 2.420960982 -0.184937 206 75 3703 Val3 ValCAC 5_flank/tRNA no 273 33.131813 327.670505 180.401159 2.256239323 -0.179806 206 76 4163 SRP 3_flank no 875 35.361956 316.522881 175.9424185 2.245370557 -0.067487 206 77 3365 Thr4 ThrTGT_ii 5_flank no 272 37.63189 299.559921 168.5959055 2.226847023 0.092095 206 78 13971 MT_COB bi3 no 7308 3751 3775 33.176313 331.541602 182.3589575 2.260927101 -0.208275 206 79 1106 Gly4 GlyTCC tRNA yes 272 6 23 35.481327 297.585628 166.5334775 2.221501551 0.086568 206 80 7974 snoRNA cluster 2 snR57 yes 739 106 132 31.008362 308.891606 169.949984 2.230321128 -0.080783 206 81 7651 snoRNA cluster1 5_flank no 1574 51 70 33.26368 315.834228 174.548954 2.241917251 -0.087238 206 82 8433 snoRNA cluster 5 intergenic no 586 331 350 33.219363 319.193122 176.2062425 2.24602129 -0.113934 206 83 14609 MT_21S Sce1 no 4639 3346 3362 35.374253 304.515253 169.944753 2.23030776 0.028428 206 84 4382 telomerase RNA telomerase yes 1501 946 963 36.350365 316.33058 176.3404725 2.246352 -0.063272 206 85 10716 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 466 481 66.414002 365.885758 216.14988 2.334754999 -0.278066 206 86 15647 YBR189W intron no 513 81 98 33.72882 319.650003 176.6894115 2.247210524 -0.111167 206 87 3348 Thr3 ThrTGT_i 3_flank no 272 34.583124 300.766882 167.675003 2.224468323 0.049672 206 88 4501 U3b (snR17b) U3b yes 662 61 78 34.281766 314.063396 174.172581 2.240979788 -0.06086 206 89 12588 MT_15S 15S yes 1848 571 597 29.612929 342.776496 186.1947125 2.269967344 -0.337681 206 90 6447 snR45 snR45 yes 372 81 98 264.023938 427.878916 345.951427 2.539015126 0.4235 206 91 4646 snR3 snR3 yes 395 146 165 30.926616 271.417795 151.1722055 2.179471949 0.135031 206 92 16814 YGL178W intron no 740 61 80 32.537071 287.018711 159.777891 2.203516684 0.104689 206 93 17573 YJL189W 3_exon no 486 461 477 35.133333 343.876981 189.505157 2.277621033 -0.299676 206 94 20923 YLR367W spliced yes 40 5 21 35.699641 314.148171 174.923906 2.242849166 -0.045577 206 95 4807 snR5 3_flank no 404 33.345012 283.078577 158.2117945 2.199238857 0.155752 206 96 5599 snR34 5_flank no 750 43.020538 281.617866 162.319202 2.210369899 0.276886 206 97 14116 MT_COB intronic no 7308 5926 5945 31.954723 299.287205 165.620964 2.219115308 0.008766 206 98 9989 RUF5-1 RUF5-1 yes 975 751 768 34.79747 309.856047 172.3267585 2.236352719 -0.021347 206 99 348 Arg5 ArgTCT 3_flank no 272 34.710903 296.729972 165.7204375 2.219376071 0.084594 206 100 11767 "rRNA(18S,5.8S,25S)" 25S yes 7956 5721 5738 38.543404 315.143451 176.8434275 2.247588924 -0.047417 206 101 12631 MT_15S 15S yes 1848 1216 1232 34.520577 289.641844 162.0812105 2.209732672 0.142068 206 102 12980 MT_COX1 ai2 no 13084 3901 3918 32.449164 325.639278 179.044221 2.252960308 -0.173059 206 103 21169 YNL312W spliced yes 40 1 18 36.218627 334.949682 185.5841545 2.268540893 -0.223404 206 104 2258 Phe1 PheGAA_i 3_flank no 292 34.131587 326.46182 180.2967035 2.255987786 -0.158363 207 2 9786 RUF4 RUF4 yes 988 706 727 29.016438 332.47735 180.746894 2.257070843 -0.285589 207 3 570 Cys1 CysGCA 3_flank no 272 52.99961 317.531683 185.2656465 2.267794896 -0.00659 207 4 15911 YDL083C intron no 532 301 319 33.417399 296.522592 164.9699955 2.217404963 0.070597 207 5 7714 snoRNA cluster1 snR77 yes 1574 366 380 70.642992 311.183409 190.9132005 2.280835958 0.14511 207 6 10084 RUF6 RUF6 yes 1251 266 285 37.249061 331.954943 184.602002 2.266236407 -0.195748 207 7 7433 snR69 snR69 yes 301 66 83 77.408054 381.430821 229.4194375 2.360630211 -0.297912 207 8 15425 YBL072C intron no 408 61 78 33.286175 308.819454 171.0528145 2.233130224 -0.031451 207 9 5396 snR31 snR31 yes 425 46 62 41.708434 295.002338 168.355386 2.226227015 0.144323 207 10 4840 snR8 5_flank no 390 31.849651 305.969415 168.909533 2.227654161 -0.035329 207 11 4514 U3b (snR17b) U3b yes 662 126 143 33.984015 291.692502 162.8382585 2.211756449 0.118146 207 12 10382 RUF7 3_flank no 700 33.969333 305.806634 169.8879835 2.230162661 0.00119 207 13 1198 Ile1 IleAAT 5_flank no 274 35.886678 273.203308 154.544993 2.189054939 0.297835 207 14 10160 RUF6 RUF6 yes 1251 646 663 31.676626 314.036773 172.8566995 2.237686216 -0.093376 207 15 4433 telomerase RNA telomerase yes 1501 1201 1215 33.506644 293.721832 163.614238 2.213821094 0.092847 207 16 8669 LSR1 / U2 RNA 5_flank/U2 no 1375 33.333764 282.327887 157.8308255 2.198191828 0.160289 207 17 6843 snR52 3_flank no 292 50.147958 266.355104 158.251531 2.19934792 0.449279 207 18 20905 YLR316C spliced yes 40 9 28 31.127871 329.960606 180.5442385 2.256583634 -0.222851 207 19 10642 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 96 117 44.010372 331.702698 187.856535 2.273826308 -0.169328 207 20 21934 copy of SH19617 no 401 41.107622 252.582231 146.8449265 2.166858946 0.552724 207 21 6414 snR45 5_flank no 372 47.321229 316.244771 181.783 2.259553266 -0.025536 207 22 15781 YDL012C 3_exon no 186 161 176 43.659493 294.412008 169.0357505 2.227978566 0.154838 207 23 5292 snR30 snR30 yes 801 311 327 38.022209 342.118635 190.070422 2.278914539 -0.276783 207 24 154 Arg1 ArgACG_i 3_flank no 273 30.294685 271.464648 150.8796665 2.178630715 0.102723 207 25 15354 YBL026W intron no 228 61 80 34.922048 292.800176 163.861112 2.214475898 0.120053 207 26 17627 YJR094W intron no 375 141 156 31.221643 293.455266 162.3384545 2.210421407 0.020763 207 27 8894 LSR1 / U2 RNA U2 yes 1375 1111 1127 33.833174 286.566001 160.1995875 2.204661393 0.148385 207 28 16514 YER117W intron no 571 461 482 32.101833 298.89594 165.4988865 2.218795076 0.015971 207 29 19615 RNA14 1.1 RNA14 1.1 yes 401 201 217 34.655504 287.474705 161.0651045 2.207001459 0.162243 207 30 14532 MT_21S 21S_rRNA3 yes 4639 2191 2215 30.51397 331.766746 181.140358 2.258015222 -0.24459 207 31 967 Gly1 GlyCCC_i 3_flank no 272 32.936472 324.178573 178.5575225 2.251778151 -0.155776 207 32 20765 YJR145C spliced yes 40 17 33 35.321901 270.742041 153.031971 2.184782172 0.297933 207 33 5273 snR30 snR30 yes 801 216 230 53.492232 274.382873 163.9375525 2.214678447 0.379398 207 34 1792 Leu8 LeuTAG_i 5_flank/tRNA no 301 32.089749 284.009738 158.0497435 2.198793795 0.109638 207 35 877 Glu2 GluTTC_i 3_flank no 272 30.978624 266.370717 148.6746705 2.172236985 0.162636 207 36 5872 snR35 3_flank no 740 35.47919 292.416851 163.9480205 2.214706177 0.129845 207 37 16011 YDL137W intron no 432 301 317 33.211871 276.087787 154.649829 2.189349444 0.197614 207 38 20628 YHR123W spliced yes 40 5 26 33.200202 291.292651 162.2464265 2.21017514 0.098543 207 39 4298 telomerase RNA telomerase yes 1501 526 545 33.186732 254.636781 143.9117565 2.158096274 0.329608 207 40 18961 YOL127W intron no 514 401 420 33.151363 274.588488 153.8699255 2.187153744 0.205736 207 41 15289 MT_9S 9S yes 701 511 537 30.820392 332.361558 181.590975 2.25909426 -0.244879 207 42 1042 Gly3 GlyGCC 5_flank no 271 32.882391 267.37178 150.1270855 2.176459053 0.246266 207 43 12973 MT_COX1 ai2 no 13084 3796 3817 30.388326 283.263182 156.825754 2.195417384 0.050866 207 44 2069 Lys4 LysTTT_ii tRNA yes 296 11 25 36.587245 311.062227 173.824736 2.240111578 -0.015752 207 45 2201 Met2 MetCAT_ii 3_flank no 272 32.840813 324.509456 178.6751345 2.252064118 -0.159502 207 46 7121 snR63 snR63 yes 455 111 130 33.418337 300.483218 166.9507775 2.222588446 0.037818 207 47 19520 ACT1 ACT1 yes 401 301 320 37.145276 290.674108 163.909692 2.214604634 0.163619 207 48 14226 MT_ATP9 ATP9 yes 431 286 306 32.55748 269.319677 150.9385785 2.178800256 0.222531 207 49 9604 RUF3 RUF3 yes 631 406 422 34.309068 300.077258 167.193163 2.223218514 0.052051 207 50 20481 YGL226C-A spliced yes 40 9 28 32.046803 348.209195 190.127999 2.279046077 -0.343837 207 51 17849 YKR094C 3_exon no 468 421 438 29.881099 294.777781 162.32944 2.21039729 -0.033342 207 52 20570 YHR010W spliced yes 40 21 33 39.935701 304.14795 172.0418255 2.235634042 0.055051 207 53 5963 snR36 snR36 yes 555 271 287 33.801575 291.077735 162.439655 2.210692058 0.118647 207 54 5413 snR31 snR31 yes 425 131 147 31.778 295.900224 163.839112 2.214417585 0.02393 207 55 14910 MT_Tyr 5_flank no 284 46 72 29.808327 303.561965 166.685146 2.2218969 -0.089952 207 56 12018 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6976 6996 44.19614 278.245025 161.2205825 2.207420486 0.313014 207 57 21488 copy of SH1854 no 301 826.192447 751.629339 788.910893 2.897027953 0.707335 207 58 8008 snoRNA cluster 2 intergenic no 739 276 298 32.388667 367.610412 199.9995395 2.301028996 -0.49358 207 59 11759 "rRNA(18S,5.8S,25S)" 25S yes 7956 5681 5694 39285.1602 12987.02084 26136.09052 4.417240626 0.837438 207 60 1715 Leu6 LeuGAG 3_flank no 282 33.950477 299.443495 166.696986 2.221927748 0.052925 207 61 12037 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7071 7093 33.123655 382.3981 207.7608775 2.317563771 -0.601725 207 62 16298 YDR450W intron no 535 241 259 41.800006 310.37728 176.088643 2.245731347 0.003788 207 63 16656 YFR032C 5_exon no 431 1 22 31.352635 294.052376 162.7025055 2.211394241 0.021392 207 64 6394 snR43 3_flank no 409 31.526114 291.595757 161.5609355 2.208336359 0.0426 207 65 386 Asn1 AsnGTT tRNA yes 274 11 25 46.862944 330.382627 188.6227855 2.275594154 -0.143377 207 66 5869 snR35 snR35/3_flank no 740 51.639958 335.300286 193.470122 2.286613906 -0.155251 207 67 5501 snR32 snR32 yes 388 166 181 278.512597 456.041851 367.277224 2.564993997 0.351729 207 68 1346 Ile3 IleTAT_ii tRNA yes 333 51 63 37.099446 303.029459 170.0644525 2.230613545 0.058618 207 69 18747 YNL162W intron no 612 261 277 44.153352 350.506365 197.3298585 2.295192804 -0.314088 207 70 9532 RUF3 RUF3 yes 631 46 64 33.158668 338.078766 185.618717 2.268621766 -0.257444 207 71 10250 RUF6 3_flank no 1251 33.259946 269.433992 151.346969 2.179973728 0.244041 207 72 17158 YHR016C 5_exon no 268 1 20 35.52195 281.853251 158.6876005 2.200542993 0.221273 207 73 9819 RUF5-1 5_flank no 975 33.203258 298.456569 165.8299135 2.219662874 0.051869 207 74 6732 snR49 3_flank no 365 33.114174 303.060005 168.0870895 2.225534357 0.01293 207 75 11033 "rRNA(18S,5.8S,25S)" 18S yes 7956 2051 2064 748.546203 1032.896478 890.7213405 2.949741858 0.057233 207 76 20377 YER179W spliced yes 40 21 37 37.464591 279.813211 158.638901 2.200409693 0.261272 207 77 20293 YDR500C spliced yes 40 13 27 73.732433 352.64547 213.1889515 2.328764694 -0.138788 207 78 21689 copy of SH10449 no 1151 32.99519 324.104067 178.5496285 2.251758951 -0.154471 207 79 2071 Lys4 LysTTT_ii tRNA yes 296 21 33 37.513724 312.108091 174.8109075 2.242568527 -0.022848 207 80 19368 YPR028W intron no 233 161 178 30.814927 270.411866 150.6133965 2.177863602 0.134354 207 81 18062 YLR344W 5_exon no 547 1 18 35.295188 325.150579 180.2228835 2.255809934 -0.1428 207 82 532 Cys1 CysGCA 5_flank no 272 33.008708 321.362634 177.185671 2.248428598 -0.133309 207 83 576 Gln1 GlnCTG 5_flank no 272 32.9161 317.654151 175.2851255 2.243745064 -0.105787 207 84 12412 5S rRNA NTS2 no 1420 1016 1032 31.665821 278.341624 155.0037225 2.190342128 0.132867 207 85 18988 YOR096W intron/exon no 501 441 458 30.387629 286.528664 158.4581465 2.199914572 0.035567 207 86 67 Ala2 AlaTGC 5_flank no 273 32.381336 295.579685 163.9805105 2.214792234 0.045565 207 87 13183 MT_COX1 exon4 yes 13084 6946 6962 34.314742 295.963733 165.1392375 2.217850275 0.086231 207 88 18299 YML073C intron no 515 181 202 34.015663 350.407314 192.2114885 2.283779342 -0.355191 207 89 16493 YER117W exon/intron no 571 41 60 29.399445 325.048615 177.22403 2.248522608 -0.230291 207 90 18919 YOL121C exon/intron no 490 41 57 33.294165 283.163422 158.2287935 2.199285517 0.153607 207 91 1037 Gly3 GlyGCC 5_flank no 271 30.790293 273.586088 152.1881905 2.182380953 0.117571 207 92 3011 Ser2 SerAGA_ii tRNA yes 282 16 32 46.936372 367.729033 207.3327025 2.316667809 -0.422574 207 93 4932 snR9 snR9 yes 387 66 78 40.195461 278.668789 159.432125 2.202575835 0.300098 207 94 12753 MT_COX1 ai1 no 13084 496 515 33.672989 316.674576 175.1737825 2.243469108 -0.088741 207 95 12305 5S rRNA NTS2 no 1420 481 497 35.330862 299.851362 167.591112 2.224250983 0.066063 207 96 20113 YDL075W spliced yes 40 1 18 37.02576 318.778585 177.9021725 2.250181252 -0.08313 207 97 7801 snoRNA cluster1 snR75 yes 1574 801 818 32.854989 244.994312 138.9246505 2.142779313 0.365403 207 98 658 Gln2 GlnTTG_i 3_flank no 272 32.681281 295.076465 163.878873 2.214522969 0.058331 207 99 3455 Trp1 TrpCCA tRNA/3_flank no 306 34.470649 294.406662 164.4386555 2.216003917 0.101144 207 100 14635 MT_21S Sce1 no 4639 3736 3760 32.363807 287.073602 159.7187045 2.203355779 0.098762 207 101 8287 snoRNA cluster4 intergenic no 638 221 240 32.196017 292.472227 162.334122 2.210409816 0.059031 207 102 10150 RUF6 RUF6 yes 1251 596 618 32.021503 340.536258 186.2788805 2.270163619 -0.289098 207 103 8408 snoRNA cluster 5 snR190 yes 586 206 227 37.618251 289.189085 163.403668 2.213261801 0.181516 207 104 19339 YPL241C intron no 180 101 122 31.677646 268.852804 150.265225 2.176858486 0.184956 208 2 7545 snR79 snR79 yes 284 66 82 36.060815 292.675554 164.3681845 2.215817758 0.134392 208 3 11456 "rRNA(18S,5.8S,25S)" 25S yes 7956 4166 4179 258.593527 496.238904 377.4162155 2.576820555 0.117887 208 4 13021 MT_COX1 ai2 no 13084 4516 4532 54.030414 327.346896 190.688655 2.280324856 -0.07968 208 5 12024 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 7006 7024 31.758586 290.022073 160.8903295 2.206529941 0.060236 208 6 5116 snR11 snR11 yes 458 181 200 38.09984 315.131245 176.6155425 2.24702892 -0.048366 208 7 2298 Phe2 PheGAA_ii tRNA/3_flank no 292 32.79425 267.737574 150.265912 2.176860472 0.240946 208 8 1653 Leu5 LeuCAA_v 3_flank no 315 31.258319 324.262622 177.7604705 2.249835191 -0.17807 208 9 918 Glu3 GluTTC_ii 3_flank no 272 31.586602 288.056244 159.821423 2.203634993 0.067088 208 10 2835 Pro7 ProTGG_vi 5_flank no 303 31.786172 324.229571 178.0078715 2.250439207 -0.170885 208 11 8087 snoRNA cluster 2 3_flank no 739 671 686 31.850546 285.006927 158.4287365 2.199833959 0.095371 208 12 5315 snR30 snR30 yes 801 426 443 31.796536 266.977517 149.3870265 2.174312883 0.200097 208 13 11314 "rRNA(18S,5.8S,25S)" 25S yes 7956 3456 3471 25910.37106 13916.30167 19913.33637 4.29914403 0.213162 208 14 13201 MT_COX1 exon4 yes 13084 7216 7230 63.734743 363.680733 213.707738 2.329820248 -0.282492 208 15 1957 Lys2 LysCTT_ii 5_flank/tRNA no 273 31.288662 273.721188 152.504925 2.183283869 0.141861 208 16 11045 "rRNA(18S,5.8S,25S)" 18S yes 7956 2111 2129 13456.11046 14041.63092 13748.87069 4.138267027 -0.602808 208 17 7836 snoRNA cluster1 snR74 yes 1574 976 995 34.922979 327.036986 180.9799825 2.257630542 -0.159932 208 18 15026 MT_COX 2; ORF1 ORF1exon1 yes 2427 991 1012 32.852082 337.628246 185.240164 2.267735157 -0.2573 208 19 12769 MT_COX1 ai1 no 13084 736 755 60.494781 355.154575 207.824678 2.317697116 -0.245859 208 20 11607 "rRNA(18S,5.8S,25S)" 25S yes 7956 4921 4936 51410.08137 29708.40284 40559.2421 4.608089831 -0.206085 208 21 1140 His1 HisGTG 5_flank no 272 39.010614 345.282172 192.146393 2.283632236 -0.298376 208 22 2798 Pro6 ProTGG_v tRNA yes 302 52 66 39.356607 271.107309 155.231958 2.190981135 0.359785 208 23 9741 RUF4 RUF4 yes 988 481 500 31.74266 311.58835 171.665505 2.234683035 -0.07317 208 24 6129 snR39B 5_flank/snR39B no 296 32.20579 316.686151 174.4459705 2.241660942 -0.107278 208 25 1500 Leu3 LeuCAA_iii 5_flank no 314 34.801093 298.816099 166.808596 2.222218427 0.068355 208 26 21553 copy of SH4566 no 662 37.47682 320.217032 178.846926 2.25248148 -0.094604 208 27 6660 snR48 3_flank no 313 84.42566 318.937591 201.6816255 2.304666333 0.168596 208 28 15248 MT_fMet tRNA yes 274 151 170 32.009732 302.272046 167.140889 2.223082708 -0.007709 208 29 19371 YPR043W 5_exon no 503 1 18 32.345848 355.090972 193.71841 2.287170896 -0.396886 208 30 8983 snR17a / U3a U3a yes 690 201 218 32.602147 350.64269 191.6224185 2.282446317 -0.360943 208 31 1060 Gly3 GlyGCC tRNA yes 271 37 51 41.692722 339.559397 190.6260595 2.280182271 -0.243063 208 32 8716 LSR1 / U2 RNA U2 yes 1375 221 238 32.902705 319.269674 176.0861895 2.245725295 -0.118493 208 33 3997 RNase MRP 3_flank no 540 32.970102 319.877298 176.4237 2.246556926 -0.122344 208 34 963 Gly1 GlyCCC_i tRNA/3_flank no 272 35.236212 315.595697 175.4159545 2.244069091 -0.061518 208 35 5659 snR34 snR34 yes 750 216 230 94.703101 350.69448 222.6987905 2.347717858 0.013271 208 36 21578 copy of SH5624 no 750 32.9826 307.176317 170.0794585 2.230651864 -0.02206 208 37 15944 YDL125C intron no 211 61 80 32.970258 299.932007 166.4511325 2.221286754 0.036766 208 38 11001 "rRNA(18S,5.8S,25S)" 18S yes 7956 1891 1907 29106.06883 16410.94782 22758.50833 4.357143793 0.081568 208 39 6425 snR45 5_flank no 372 37.457146 316.074885 176.7660155 2.247398773 -0.058274 208 40 15552 YBR078W 3_exon no 430 401 418 35.211302 287.173588 161.192445 2.207344683 0.171421 208 41 11050 "rRNA(18S,5.8S,25S)" 18S yes 7956 2136 2154 35.153264 347.938776 191.54602 2.282273133 -0.332434 208 42 17228 YHR077C exon/intron no 213 41 59 32.779968 298.208723 165.4943455 2.21878316 0.042038 208 43 10332 RUF7 RUF7 yes 700 271 289 32.535025 312.92136 172.7281925 2.237363228 -0.073511 208 44 12937 MT_COX1 ai2 no 13084 3256 3275 32.189084 282.603089 157.3960865 2.19699393 0.122007 208 45 11066 "rRNA(18S,5.8S,25S)" 18S yes 7956 2216 2233 17742.35981 13186.10497 15464.23239 4.189328367 -0.160346 208 46 2695 Pro4 ProTGG_iii 3_flank no 302 33.447753 297.547245 165.497499 2.218791435 0.062448 208 47 15821 YDL064W intron no 210 61 78 35.084123 300.736546 167.9103345 2.225077427 0.055877 208 48 13462 MT_COX1 intronic no 13084 11131 11153 30.508716 338.53207 184.520393 2.266044371 -0.294549 208 49 15533 YBR078W 5_exon no 430 21 37 44.588548 298.214486 171.401517 2.234014661 0.122637 208 50 21641 copy of SH8351 no 638 55.520155 415.674775 235.597465 2.372170613 -0.669884 208 51 7979 snoRNA cluster 2 snR57 yes 739 131 148 37.89973 350.532207 194.2159685 2.288284935 -0.343883 208 52 13410 MT_COX1 intronic no 13084 10351 10374 29.681954 328.895462 179.288708 2.253552938 -0.241966 208 53 4864 snR8 snR8 yes 390 101 116 47.777369 270.429288 159.1033285 2.201679265 0.400744 208 54 4915 snR9 5_flank no 387 33.614178 284.13166 158.872919 2.201049875 0.157311 208 55 8714 LSR1 / U2 RNA U2 yes 1375 211 226 33.661338 263.78089 148.721114 2.17237263 0.295609 208 56 16913 YGL251C 5_exon no 252 21 38 62.296755 336.528175 199.412465 2.299752302 -0.100698 208 57 3764 Val4 ValTAC tRNA yes 274 45 57 36.030152 289.221821 162.6259865 2.211189944 0.163376 208 58 16539 YER131W intron/exon no 461 401 420 30.156887 387.656506 208.9066965 2.319952362 -0.648453 208 59 13606 MT_ATP8/AAP1 AAP1/3_flank no 347 226 252 33.513565 369.154327 201.333946 2.303917005 -0.502173 208 60 2101 Lys4 LysTTT_ii 3_flank no 296 32.747718 361.932246 197.339982 2.295215084 -0.449078 208 61 338 Arg5 ArgTCT tRNA yes 272 26 43 32.98859 317.551201 175.2698955 2.243707328 -0.104075 208 62 4846 snR8 snR8 yes 390 11 29 35.312921 294.823948 165.0684345 2.217664032 0.10764 208 63 17413 YIL106W intron no 185 101 118 33.398513 315.431173 174.414843 2.241583441 -0.082407 208 64 7809 snoRNA cluster1 intergenic no 1574 841 860 31.477318 292.441094 161.959206 2.209405639 0.035653 208 65 12400 5S rRNA NTS2 no 1420 956 973 33.875316 299.116599 166.4959575 2.221403693 0.054707 208 66 11103 "rRNA(18S,5.8S,25S)" 18S yes 7956 2401 2419 47.281241 302.2056 174.7434205 2.242400833 0.094521 208 67 1684 Leu6 LeuGAG 5_flank/tRNA no 282 34.559955 314.074775 174.317365 2.241340652 -0.057603 208 68 1913 Lys1 LysCTT_i tRNA yes 272 21 35 34.925895 269.12976 152.0278275 2.181923089 0.297157 208 69 13375 MT_COX1 intronic no 13084 9826 9854 30.762199 293.652771 162.207485 2.210070891 0.004044 208 70 13028 MT_COX1 ai2 no 13084 4621 4642 30.946188 313.233509 172.0898485 2.235755252 -0.108579 208 71 1253 Ile2 IleTAT_i 5_flank no 333 33.278096 348.764451 191.0212735 2.281081736 -0.344062 208 72 83 Ala2 AlaTGC tRNA yes 273 51 63 33.253782 254.42988 143.841831 2.157885203 0.333827 208 73 11995 "rRNA(18S,5.8S,25S)" 3_ETS no 7956 6861 6874 77.447962 294.56401 186.005986 2.269526921 0.319023 208 74 12260 5S rRNA NTS2 no 1420 256 272 39.755003 291.567967 165.661485 2.21922155 0.172662 208 75 21055 YMR143W spliced yes 40 21 40 32.898062 296.573867 164.7359645 2.216788423 0.055915 208 76 8675 LSR1 / U2 RNA U2 yes 1375 16 32 35.03179 298.178117 166.6049535 2.22168791 0.076373 208 77 5023 snR10 snR10 yes 445 146 160 41.661141 304.22388 172.9425105 2.237901759 0.058241 208 78 11087 "rRNA(18S,5.8S,25S)" 18S yes 7956 2321 2336 55.056905 300.061715 177.55931 2.249343449 0.151201 208 79 13727 MT_COB 5_flank/exon1 no 7308 91 112 32.748225 337.552651 185.150438 2.267524744 -0.258058 208 80 10012 RUF6 5_flank no 1251 34.981188 316.015713 175.4984505 2.244273286 -0.067812 208 81 7459 snR71 5_flank no 290 34.971565 355.870211 195.420888 2.290970982 -0.395885 208 82 9910 RUF5-1 RUF5-1 yes 975 356 374 32.704451 328.208488 180.4564695 2.256372456 -0.189236 208 83 12088 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7326 7343 39.257236 304.735311 171.9962735 2.235519038 0.048096 208 84 10754 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 656 674 32.470769 291.685075 162.077922 2.20972386 0.072866 208 85 15271 MT_9S 9S yes 701 241 263 32.28439 320.051273 176.1678315 2.245926609 -0.13239 208 86 7919 snoRNA cluster1 snR72 yes 1574 1391 1410 32.062879 285.136598 158.5997385 2.200302467 0.101472 208 87 8804 LSR1 / U2 RNA U2 yes 1375 661 680 31.815694 317.822828 174.819261 2.24258928 -0.121178 208 88 21462 copy of SH808 no 272 48.730264 270.881221 159.8057425 2.203592381 0.398976 208 89 19616 RNA14 1.1 RNA14 1.1 yes 401 221 240 35.506 326.529558 181.017779 2.257721232 -0.154081 208 90 14447 MT_21S 21S_rRNA3 yes 4639 916 940 30.953596 307.697045 169.3253205 2.228721906 -0.075495 208 91 9460 RUF2 RUF2 yes 468 141 159 30.62573 303.08212 166.853925 2.222336427 -0.058791 208 92 4978 snR10 5_flank no 445 30.284919 284.794538 157.5397285 2.197390093 0.03839 208 93 14536 MT_21S 21S_rRNA3 yes 4639 2251 2272 31.976229 336.934321 184.455275 2.26589108 -0.263405 208 94 20975 YML034W spliced yes 40 21 37 45.751446 303.422403 174.5869245 2.242011715 0.078815 208 95 14592 MT_21S Sce1 no 4639 3091 3116 35.300294 359.694773 197.4975335 2.295561676 -0.42478 208 96 15540 YBR078W intron no 430 161 178 34.985589 282.777816 158.8817025 2.201073885 0.20688 208 97 1791 Leu8 LeuTAG_i 5_flank no 301 34.70603 288.327292 161.516661 2.208217328 0.155528 208 98 18491 YMR194W intron no 563 181 202 32.502547 301.283953 166.89325 2.222438772 0.014273 208 99 14726 MT_Cys; His intergenic no 456 211 223 41.950054 301.435726 171.69289 2.234752311 0.084572 208 100 16506 YER117W intron no 571 301 317 35.87511 286.760673 161.3178915 2.207682537 0.182711 208 101 5024 snR10 snR10 yes 445 151 167 31.798189 248.821256 140.3097225 2.147087766 0.293964 208 102 15615 YBR181C intron no 452 81 97 41.087509 310.322527 175.705018 2.244784165 0.001823 208 103 3468 Trp1 TrpCCA 3_flank no 306 58.055069 308.42491 183.2399895 2.263020258 0.095773 208 104 2015 Lys3 LysTTT_i tRNA yes 296 21 33 36.840534 286.592471 161.7165025 2.20875434 0.195156 209 2 17049 YGR214W intron no 555 121 133 61.845622 304.734191 183.2899065 2.26313855 0.147195 209 3 9249 snR6 / U6 RNA 3_flank no 312 32.45359 350.722792 191.588191 2.282368737 -0.361998 209 4 8979 snR17a / U3a U3a yes 690 181 198 150.404752 408.281846 279.343299 2.446138258 0.0171 209 5 15643 YBR189W 5_exon no 513 1 18 104.418863 452.745809 278.582336 2.444953576 -0.484843 209 6 16221 YDR381W intron no 866 321 337 43.808816 313.260873 178.5348445 2.25172299 -0.014894 209 7 13025 MT_COX1 ai2 no 13084 4576 4595 30.75834 306.247277 168.5028085 2.226607144 -0.073407 209 8 3900 RNase MRP 5_flank no 540 33.179773 300.591245 166.885509 2.222418628 0.033963 209 9 6002 snR37 5_flank no 586 31.513028 272.896689 152.2048585 2.182428516 0.15698 209 10 8945 snR17a / U3a U3a yes 690 11 29 35.733015 341.71514 188.7240775 2.275827311 -0.28051 209 11 5442 snR31 3_flank no 425 30.729164 310.858324 170.793744 2.232471959 -0.101913 209 12 6641 snR48 snR48 yes 313 31 47 33.684 259.574022 146.629011 2.166219905 0.325912 209 13 21486 copy of SH1852 no 301 29995.26384 18357.66704 24176.46544 4.383392808 -0.067761 209 14 11384 "rRNA(18S,5.8S,25S)" 25S yes 7956 3806 3826 18392.68284 10848.89667 14620.78975 4.164970832 0.208166 209 15 4450 telomerase RNA telomerase/3_flank no 1501 46.083732 300.641598 173.362665 2.238955575 0.1051 209 16 19591 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 121 142 32.965502 350.205914 191.585708 2.282363108 -0.356448 209 17 10703 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 401 419 32.820263 301.717286 167.2687745 2.223414875 0.020212 209 18 3375 Thr4 ThrTGT_ii 5_flank no 272 30.762619 305.98744 168.3750295 2.226277685 -0.071699 209 19 7560 snR79 3_flank no 284 34.6493 266.480754 150.565027 2.177724106 0.307066 209 20 17451 YIL148W intron no 534 121 138 32.758337 282.698981 157.728659 2.197910611 0.139687 209 21 4179 telomerase RNA 5_flank no 1501 30.975853 282.362384 156.6691185 2.1949834 0.083457 209 22 5143 snR11 3_flank no 458 117.540653 348.048811 232.794732 2.366973148 0.170643 209 23 6587 snR47 snR47 yes 299 41 62 31.689349 330.46921 181.0792795 2.257868758 -0.219255 209 24 19596 AEP2/ATP13 2.1 AEP2/ATP13 2.1 yes 401 221 237 69.312366 333.334082 201.323224 2.303893877 -0.032442 209 25 21490 copy of SH2038 no 296 41.065476 361.315889 201.1906825 2.303607864 -0.412075 209 26 18526 YMR225C intron no 247 141 157 34.315218 280.175751 157.2454845 2.196578183 0.204679 209 27 4258 telomerase RNA telomerase yes 1501 326 343 33.746301 314.775022 174.2606615 2.241199358 -0.072972 209 28 20876 YLR185W spliced yes 40 13 29 60.365141 331.890884 196.1280125 2.292539627 -0.0773 209 29 1814 Leu8 LeuTAG_i tRNA/3_flank no 301 34.486438 316.059478 175.272958 2.243714916 -0.074052 209 30 14950 MT_Met tRNA yes 276 121 140 32.517462 313.774927 173.1461945 2.238412951 -0.080466 209 31 17380 YIL052C intron no 572 501 520 32.666073 331.245302 181.9556875 2.259965635 -0.212483 209 32 19755 Negative Control no 60 NA #VALUE! 37.200431 295.864695 166.532563 2.221499166 0.120492 209 33 4362 telomerase RNA telomerase yes 1501 846 860 41.705963 260.243884 150.9749235 2.178904818 0.484858 209 34 11813 "rRNA(18S,5.8S,25S)" 25S yes 7956 5951 5969 30.570353 291.016214 160.7932835 2.206267904 0.014116 209 35 20529 YGR118W spliced yes 40 25 39 39.451393 275.556547 157.50397 2.197291505 0.320552 209 36 3966 RNase MRP RNaseMRP yes 540 246 264 32.744287 282.112065 157.428176 2.197082464 0.143066 209 37 10817 "rRNA(18S,5.8S,25S)" 18S yes 7956 971 987 1905.229215 2082.414866 1993.822041 3.299686393 0.140339 209 38 2725 Pro5 ProTGG_iv tRNA yes 303 6 23 76.411799 340.264085 208.337942 2.31876837 -0.035684 209 39 21906 copy of SH19401 no 186 34.989119 275.951591 155.470355 2.19164759 0.252958 209 40 10940 "rRNA(18S,5.8S,25S)" 18S yes 7956 1586 1601 35.013277 271.380224 153.1967505 2.185249553 0.284434 209 41 6510 snR46 snR46 yes 397 41 58 30.54608 306.228752 168.387416 2.226309632 -0.080527 209 42 18458 YMR143W intron no 644 161 178 32.66795 295.498427 164.0831885 2.215064087 0.055274 209 43 17355 YIL052C 5_exon no 572 1 18 56.820294 299.748493 178.2843935 2.251113328 0.163259 209 44 12270 5S rRNA NTS2 no 1420 306 324 34.348753 327.183747 180.76625 2.257117349 -0.162699 209 45 3143 Ser4 SerGCT 3_flank no 301 36.106559 311.92236 174.0144595 2.240585337 -0.024675 209 46 17994 YLR287C intron no 530 61 80 29.246655 304.5604 166.9035275 2.222465516 -0.115862 209 47 10363 RUF7 RUF7 yes 700 426 443 35.163144 312.734221 173.9486825 2.240421144 -0.039868 209 48 18499 YMR194W intron no 563 341 359 33.689668 292.181434 162.935551 2.212015854 0.108216 209 49 15948 YDL125C intron no 211 141 156 34.355835 312.542703 173.449269 2.239172474 -0.047971 209 50 17114 YHR010W 5_exon no 661 1 20 74.166902 355.621116 214.894009 2.332224308 -0.156086 209 51 6844 snR52 3_flank no 292 39.904775 276.733993 158.319384 2.199534091 0.314746 209 52 4617 snR3 snR3 yes 395 1 19 31.639301 304.731911 168.185606 2.225788824 -0.034786 209 53 6018 snR37 snR37 yes 586 6 23 33.546103 308.684488 171.1152955 2.233288832 -0.027149 209 54 2228 Phe1 PheGAA_i tRNA yes 292 16 28 58.726431 298.511596 178.6190135 2.251927686 0.183755 209 55 4301 telomerase RNA telomerase yes 1501 541 558 29.525036 265.100967 147.3130015 2.168241078 0.094327 209 56 542 Cys1 CysGCA tRNA yes 272 11 24 43.761153 319.535991 181.648572 2.259231988 -0.069452 209 57 718 Gln3 GlnTTG_ii 3_flank no 272 35.875255 356.01213 195.9436925 2.292131288 -0.394251 209 58 15487 YBL092W intron no 433 121 135 59.781473 409.252822 234.5171475 2.370174603 -0.597956 209 59 5385 snR31 5_flank/snR31 no 425 40.5674 371.986223 206.2768115 2.31445041 -0.491901 209 60 9271 RUF1 5_flank no 750 32.584926 336.931562 184.758244 2.266603826 -0.255577 209 61 3096 Ser3 SerCGA 3_flank no 301 37.019047 300.411096 168.7150715 2.22715388 0.080781 209 62 6609 snR47 3_flank no 299 35.173357 256.998458 146.0859075 2.164608323 0.389451 209 63 18173 YLR448W intron no 484 241 260 33.299381 288.99961 161.1494955 2.20722895 0.116209 209 64 14123 MT_COB intronic no 7308 6031 6050 31.420825 294.278631 162.849728 2.211787038 0.022245 209 65 8652 LSR1 / U2 RNA 5_flank no 1375 42.491322 309.879329 176.1853255 2.245969733 0.010528 209 66 8443 snoRNA cluster 5 snR128 yes 586 381 397 34.211536 285.820304 160.01592 2.204163193 0.164795 209 67 422 Asp1 AspGTC_i 5_flank no 271 32.399892 286.252205 159.3260485 2.202286785 0.105201 209 68 12303 5S rRNA NTS2 no 1420 471 487 37.202184 299.371094 168.286639 2.226049637 0.091395 209 69 6646 snR48 snR48 yes 313 56 73 33.04155 324.520593 178.7810715 2.252321536 -0.157063 209 70 19091 YOR312C exon/intron no 507 41 59 30.970994 314.368848 172.669921 2.23721669 -0.114403 209 71 9243 snR6 / U6 RNA U6 yes 312 86 107 33.279847 278.734242 156.0070445 2.193144209 0.182185 209 72 18532 YMR230W 5_exon no 510 21 40 37.733844 292.337803 165.0358235 2.217578225 0.156024 209 73 19506 ACT1 ACT1 yes 401 21 38 42.078198 307.021981 174.5500895 2.241920076 0.034546 209 74 12852 MT_COX1 ai1 no 13084 1981 2000 48.586681 348.638661 198.612671 2.298006952 -0.274318 209 75 12819 MT_COX1 ai1 no 13084 1486 1510 32.72445 315.217639 173.9710445 2.240476971 -0.089176 209 76 10929 "rRNA(18S,5.8S,25S)" 18S yes 7956 1531 1544 41.44092 290.997491 166.2192055 2.220681202 0.181926 209 77 5828 snR35 snR35 yes 740 326 343 32.474896 331.298821 181.8868585 2.259801322 -0.215313 209 78 5472 snR32 snR32 yes 388 21 40 32.415325 311.438429 171.926877 2.235343774 -0.063298 209 79 17356 YIL052C 5_exon no 572 21 38 32.387849 317.146459 174.767154 2.242459814 -0.108533 209 80 3270 Thr2 ThrCGT 5_flank no 272 32.374554 330.245933 181.3102435 2.258422341 -0.208728 209 81 15486 YBL092W intron no 433 101 117 32.354502 321.326179 176.8403405 2.247581342 -0.141317 209 82 21080 YMR230W spliced yes 40 25 40 34.500472 279.454435 156.9774535 2.19583728 0.215048 209 83 8990 snR17a / U3a U3a yes 690 236 252 38.785899 293.195484 165.9906915 2.220083734 0.154856 209 84 12692 MT_ORF 8 5_flank no 491 46 72 29.905917 292.651707 161.278812 2.207577316 -0.019148 209 85 11429 "rRNA(18S,5.8S,25S)" 25S yes 7956 4031 4044 11547.56665 15008.64377 13278.10521 4.123136106 -0.900463 209 86 20496 YGL251C spliced yes 40 21 38 35.985923 286.676249 161.331086 2.207718057 0.184715 209 87 17820 YKR057W intron no 422 261 278 31.449174 307.260756 169.354965 2.228797933 -0.056296 209 88 20460 YGL178W spliced yes 40 21 39 33.326563 299.786318 166.5564405 2.221561431 0.042418 209 89 10898 "rRNA(18S,5.8S,25S)" 18S yes 7956 1376 1389 58.436015 291.79235 175.1141825 2.243321321 0.241218 209 90 11564 "rRNA(18S,5.8S,25S)" 25S yes 7956 4706 4723 284.263106 473.434001 378.8485535 2.578465633 0.300518 209 91 3175 Ser5 SerTGA 5_flank/tRNA no 282 53.285555 284.550909 168.918232 2.227676527 0.282392 209 92 4037 SRP SRP yes 875 76 95 30.162929 295.078894 162.6209115 2.211176391 -0.025419 209 93 2639 Pro3 ProTGG_ii 3_flank no 303 31.894579 290.982463 161.438521 2.20800717 0.058611 209 94 10668 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 226 243 33.582726 288.568497 161.0756115 2.207029789 0.127805 209 95 9302 RUF1 RUF1 yes 750 86 102 37.230244 301.577324 169.403784 2.228923107 0.072361 209 96 8038 snoRNA cluster 2 snR55/intergenic no 739 426 445 32.920336 261.320979 147.1206575 2.167673657 0.282581 209 97 4850 snR8 snR8 yes 390 31 47 40.427797 279.304708 159.8662525 2.203756795 0.294256 209 98 8473 snoRNA cluster 5 3_flank no 586 531 548 34.229913 307.094576 170.6622445 2.232137453 -0.006032 209 99 6958 snR58 3_flank no 296 33.905243 309.100568 171.5029055 2.234271482 -0.026069 209 100 16939 YGR027C intron no 412 141 158 35.488229 289.990517 162.739373 2.211492638 0.150542 209 101 11150 "rRNA(18S,5.8S,25S)" 18S yes 7956 2636 2654 23304.9568 6398.305035 14851.63092 4.171774148 1.375951 209 102 3185 Ser5 SerTGA tRNA yes 282 e12 49 36.745908 290.958617 163.8522625 2.214452443 0.156725 209 103 3532 Tyr2 TyrGTA_ii 5_flank no 289 36.474629 313.51183 174.9932295 2.243021246 -0.037951 209 104 3208 Ser5 SerTGA 3_flank no 282 32.514843 295.747448 164.1311455 2.215191001 0.048817 210 2 4610 snR3 5_flank no 395 29.992882 295.999127 162.9960045 2.212176959 -0.037056 210 3 2541 Pro2 ProTGG_i 5_flank no 303 40.637683 309.191741 174.914712 2.242826339 0.010687 210 4 8269 snoRNA cluster4 snR67 yes 638 131 148 40.332108 383.544044 211.938076 2.326208987 -0.574101 210 5 10920 "rRNA(18S,5.8S,25S)" 18S yes 7956 1486 1505 89.226359 463.785732 276.5060455 2.441704631 -0.649762 210 6 2946 Ser1 SerAGA_i 5_flank no 283 31.128645 325.0645 178.0965725 2.250655561 -0.185895 210 7 20505 YGR027C spliced yes 40 5 22 34.5918 295.690224 165.141012 2.217854942 0.091846 210 8 15571 YBR084C intron no 606 181 198 31.106675 286.324095 158.715385 2.200619027 0.062205 210 9 12126 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7516 7531 53.549552 314.232423 183.8909875 2.264560445 0.023511 210 10 18352 YML124C 3_exon no 398 361 378 29.583495 309.682212 169.6328535 2.229509968 -0.13461 210 11 9766 RUF4 RUF4 yes 988 606 624 31.635681 306.975804 169.3057425 2.228671689 -0.048414 210 12 7055 snR62 snR62 yes 300 66 83 37.611876 290.641457 164.1266665 2.215179149 0.169065 210 13 6199 snR40 snR40 yes 297 56 71 51.55818 328.655033 190.1066065 2.27899721 -0.103902 210 14 9779 RUF4 RUF4 yes 988 671 685 39.261197 332.00636 185.6337785 2.268657005 -0.189918 210 15 17945 YLR128W intron no 194 61 80 35.080493 281.240944 158.1607185 2.199098629 0.220724 210 16 10634 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 56 71 36.886755 286.551923 161.719339 2.208761958 0.196025 210 17 9183 snR7 U5 RNA U5 yes 415 186 202 44.623963 283.003378 163.8136705 2.214350141 0.266515 210 18 13230 MT_COX1 ai4 no 13084 7651 7671 30.740953 321.193331 175.967142 2.24543158 -0.16173 210 19 11114 "rRNA(18S,5.8S,25S)" 18S yes 7956 2456 2473 50.357906 341.783337 196.0706215 2.292412525 -0.212285 210 20 11520 "rRNA(18S,5.8S,25S)" 25S yes 7956 4486 4508 48.491633 365.291739 206.891686 2.315743039 -0.395686 210 21 13222 MT_COX1 ai4 no 13084 7531 7548 33.931401 354.880812 194.4061065 2.288709902 -0.390863 210 22 5980 snR36 3_flank no 555 31.296897 284.28159 157.7892435 2.198077394 0.081752 210 23 13469 MT_COX1 intronic no 13084 11236 11253 29.721776 340.576949 185.1493625 2.267522221 -0.320252 210 24 16117 YDR064W intron no 639 261 282 28.164255 301.742368 164.9533115 2.217361039 -0.151383 210 25 20992 YML073C spliced yes 40 9 24 40.147425 283.962035 162.05473 2.209661712 0.247414 210 26 21638 copy of SH8143 no 743 39.735526 331.859384 185.797455 2.269039761 -0.186993 210 27 267 Arg4 ArgCCT 5_flank no 272 29.526761 308.128495 168.827628 2.227443519 -0.127354 210 28 12416 5S rRNA NTS2 no 1420 1036 1055 32.030359 286.320321 159.17534 2.201875786 0.092785 210 29 9949 RUF5-1 RUF5-1 yes 975 551 567 33.390633 276.794612 155.0926225 2.19059114 0.198512 210 30 8080 snoRNA cluster 2 snR61/3_flank no 739 636 654 32.474588 304.440794 168.457691 2.226490844 -0.00638 210 31 10439 RUF8 RUF8 yes 1151 121 137 39.227101 288.686609 163.956855 2.214729579 0.199191 210 32 19895 snR17A spliced yes 40 9 24 34.850174 327.379713 181.1149435 2.257954285 -0.163049 210 33 3917 RNase MRP RNaseMRP yes 540 1 18 39.296106 304.213385 171.7547455 2.234908745 0.052976 210 34 20301 YEL012W spliced yes 40 21 38 34.827543 329.672073 182.249808 2.260667079 -0.182605 210 35 19257 YPL143W 5_exon no 625 21 40 30.358943 328.463887 179.411415 2.253850071 -0.221972 210 36 5168 snR13 5_flank/snR13 no 324 36.944946 308.833366 172.889156 2.237767754 0.005229 210 37 18446 YMR142C intron no 502 421 443 34.710711 321.282469 177.99659 2.250411682 -0.111874 210 38 15920 YDL083C intron/exon no 532 481 498 36.93534 315.73303 176.334185 2.246336515 -0.056531 210 39 14948 MT_Met 5_flank/tRNA no 276 91 110 32.557329 317.348444 174.9528865 2.242921112 -0.107945 210 40 7422 snR69 snR69 yes 301 11 25 50.382333 286.955697 168.669015 2.227035309 0.246417 210 41 20693 YIL148W spliced yes 40 5 25 32.613393 303.036518 167.8249555 2.224856541 0.006811 210 42 13793 MT_COB intronic no 7308 1081 1105 30.343024 314.108603 172.2258135 2.236098245 -0.134269 210 43 15810 YDL061C intron no 509 341 358 32.393786 303.140717 167.7672515 2.22470719 -0.000539 210 44 7703 snoRNA cluster1 intergenic/snR77 no 1574 311 330 32.141492 292.655869 162.3986805 2.210582496 0.056105 210 45 17958 YLR185W intron no 459 141 153 45.897693 271.662835 158.780264 2.20079652 0.383354 210 46 7025 snR62 5_flank no 300 35.713689 318.721272 177.2174805 2.248506558 -0.085922 210 47 18077 YLR344W intron no 547 301 319 33.163311 347.816609 190.48996 2.279872091 -0.336774 210 48 8384 snoRNA cluster 5 5_flank/snR190 no 586 86 103 36.940746 345.717149 191.3289475 2.281780682 -0.309594 210 49 2622 Pro3 ProTGG_ii intron/tRNA no 303 i25 45 46.893005 292.566103 169.729554 2.22975747 0.182266 210 50 6091 snR37 snR37/3_flank no 586 30.056967 309.930639 169.993803 2.23043309 -0.119506 210 51 6197 snR40 snR40 yes 297 46 61 35.907699 339.417802 187.6627505 2.273378077 -0.261217 210 52 930 Gly1 GlyCCC_i 5_flank no 272 27.635832 305.564439 166.6001355 2.22167535 -0.197573 210 53 4905 snR9 5_flank no 387 31.537664 345.315333 188.4264985 2.275141978 -0.329844 210 54 14585 MT_21S intronic no 4639 2986 3002 43.546602 326.917955 185.2322785 2.267716669 -0.132799 210 55 21401 Pro8 spliced yes 40 9 23 39.540062 286.18262 162.861341 2.211818006 0.224257 210 56 11888 "rRNA(18S,5.8S,25S)" 25S yes 7956 6326 6343 233.460538 547.325765 390.3931515 2.59150219 -0.168946 210 57 17944 YLR128W exon/intron no 194 41 57 35.792188 439.324018 237.558103 2.375769849 -0.961868 210 58 4897 snR8 3_flank no 390 40.106904 456.647906 248.377405 2.395112085 -1.029849 210 59 12929 MT_COX1 ai2 no 13084 3136 3151 335.480262 646.438422 490.959342 2.691045528 -0.089853 210 60 7034 snR62 5_flank no 300 42.777421 309.178547 175.977984 2.245458338 0.017694 210 61 6310 snR42 snR42 yes 551 331 345 77.695414 298.323804 188.009609 2.274180046 0.289082 210 62 10943 "rRNA(18S,5.8S,25S)" 18S yes 7956 1601 1616 39.207418 272.701675 155.9545465 2.19299804 0.343721 210 63 4576 U3b (snR17b) U3b yes 662 436 450 136.991223 363.422249 250.206736 2.398298997 0.187482 210 64 12776 MT_COX1 ai1 no 13084 841 867 31.336174 316.404535 173.8703545 2.24022554 -0.116413 210 65 11956 "rRNA(18S,5.8S,25S)" 25S yes 7956 6666 6681 2655.302156 2122.607709 2388.954933 3.378207957 0.538996 210 66 10044 RUF6 RUF6 yes 1251 66 85 32.024712 302.057068 167.04089 2.222822795 -0.005911 210 67 3264 Thr2 ThrCGT 5_flank no 272 32.409099 290.687488 161.5482935 2.208302375 0.077189 210 68 1650 Leu5 LeuCAA_v 3_flank no 315 32.767543 291.457677 162.11261 2.209816798 0.083803 210 69 16719 YGL031C 3_exon no 556 521 540 33.048465 284.100223 158.574344 2.200232923 0.139791 210 70 1069 Gly3 GlyGCC 3_flank no 271 30.958031 312.709109 171.83357 2.235108013 -0.105094 210 71 10259 RUF7 5_flank no 700 33.239611 292.5141 162.8768555 2.211859376 0.092078 210 72 21757 copy of SH13182 no 13084 35.397414 308.964362 172.180888 2.235984943 -0.007147 210 73 20936 YLR406C spliced yes 40 9 26 32.96403 276.988407 154.9762185 2.19026506 0.183796 210 74 16119 YDR064W intron no 639 301 317 32.73688 278.760167 155.7485235 2.192423938 0.164836 210 75 10183 RUF6 RUF6 yes 1251 761 776 36.925117 293.232224 165.0786705 2.217690963 0.139503 210 76 491 Asp2 AspGTC_ii tRNA yes 272 16 30 304.12896 490.373438 397.251199 2.599065217 0.302408 210 77 10277 RUF7 5_flank/RUF7 no 700 34.322353 295.142125 164.732239 2.216778601 0.093193 210 78 10115 RUF6 RUF6 yes 1251 421 442 40.744769 334.923286 187.8340275 2.273774271 -0.208629 210 79 5960 snR36 snR36 yes 555 256 275 31.955193 296.473269 164.214231 2.215410791 0.026174 210 80 15546 YBR078W intron no 430 281 298 31.913392 293.856572 162.884982 2.211881044 0.04113 210 81 9977 RUF5-1 RUF5-1 yes 975 691 708 36.213363 259.5712 147.8922815 2.169945509 0.401539 210 82 9440 RUF2 RUF2 yes 468 41 57 38.324918 284.357254 161.341086 2.207744976 0.230862 210 83 9349 RUF1 RUF1 yes 750 321 340 31.748817 298.423367 165.086092 2.217710487 0.007338 210 84 15225 MT_COX3 cox3 no 1010 796 813 31.623077 301.176365 166.399721 2.221152594 -0.013713 210 85 6821 snR52 snR52 yes 292 11 28 8785.406398 4631.009044 6708.207721 3.826606502 0.725208 210 86 6600 snR47 3_flank no 299 35.511399 300.283396 167.8973975 2.225043964 0.064616 210 87 9974 RUF5-1 RUF5-1 yes 975 676 697 33.167505 343.254891 188.211198 2.274645459 -0.299874 210 88 5794 snR35 snR35 yes 740 156 177 30.856892 306.25317 168.555031 2.22674172 -0.070102 210 89 8809 LSR1 / U2 RNA U2 yes 1375 686 700 32.744956 271.29224 152.018598 2.181896723 0.215091 210 90 14758 MT_ORF11; Leu; Gln ORF11 yes 716 256 268 47.082888 299.011533 173.0472105 2.238164603 0.123068 210 91 4210 telomerase RNA telomerase yes 1501 86 103 32.314142 297.301428 164.807785 2.216977723 0.032703 210 92 15217 MT_COX3 cox3 no 1010 676 692 32.066576 294.990917 163.5287465 2.213594108 0.039037 210 93 3669 Val2 ValAAC_ii 3_flank no 274 33.814149 335.69235 184.7532495 2.266592086 -0.235864 210 94 19568 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 61 78 43.549031 287.852582 165.7008065 2.219324622 0.216818 210 95 692 Gln3 GlnTTG_ii 5_flank/tRNA no 272 45.101698 299.137249 172.1194735 2.235830009 0.115792 210 96 10307 RUF7 RUF7 yes 700 146 158 712.862942 537.353982 625.108462 2.795955378 1.098786 210 97 991 Gly2 GlyCCC_ii 5_flank no 272 31.462372 288.425806 159.944089 2.203968195 0.060612 210 98 1558 Leu4 LeuCAA_iv 5_flank no 314 33.988617 325.338203 179.66341 2.254459638 -0.151581 210 99 11781 "rRNA(18S,5.8S,25S)" 25S yes 7956 5791 5806 1171.524291 1076.01768 1123.770986 3.050677815 0.551264 210 100 9608 RUF3 RUF3/3_flank no 631 33.21982 286.092928 159.656374 2.203186262 0.132323 210 101 16098 YDR059C intron no 190 61 83 36.597934 311.972131 174.2850325 2.241260092 -0.023887 210 102 19185 YPL079W intron no 521 381 397 34.393693 334.890047 184.64187 2.26633019 -0.227627 210 103 10802 "rRNA(18S,5.8S,25S)" 18S yes 7956 896 909 356.65424 354.598181 355.6262105 2.550993762 1.07355 210 104 17818 YKR057W intron no 422 221 237 46.828758 345.83524 196.331999 2.292991088 -0.264223 211 2 11873 "rRNA(18S,5.8S,25S)" 25S yes 7956 6251 6266 8382.765317 10212.82846 9297.796888 3.968380055 -0.650248 211 3 13624 MT_ATP6 ATP6 yes 980 166 185 30.365149 319.793511 175.07933 2.243234876 -0.166532 211 4 6113 snR39B 5_flank no 296 27.154165 267.073822 147.1139935 2.167653985 -0.058611 211 5 553 Cys1 CysGCA tRNA/3_flank no 272 31.436481 282.60305 157.0197655 2.195954324 0.097302 211 6 999 Gly2 GlyCCC_ii 5_flank/tRNA no 272 33.928817 322.032056 177.9804365 2.250372268 -0.127067 211 7 13570 MT_COX1 exon6 yes 13084 12751 12770 30.580923 287.573778 159.0773505 2.201608349 0.036387 211 8 17577 YJL191W intron no 508 61 75 36.948818 291.837289 164.3930535 2.215883462 0.151553 211 9 7816 snoRNA cluster1 intergenic no 1574 876 892 33.31326 285.203953 159.2586065 2.202102911 0.140986 211 10 10543 RUF8 RUF8 yes 1151 641 662 31.495812 312.633241 172.0645265 2.235691344 -0.086664 211 11 16224 YDR381W intron no 866 381 398 33.565793 284.279571 158.922682 2.201185886 0.154849 211 12 4317 telomerase RNA telomerase yes 1501 621 635 39.567793 296.061439 167.814616 2.224829783 0.129499 211 13 20682 YIL111W spliced yes 40 9 26 31.41022 255.041997 143.2261085 2.156022192 0.242007 211 14 9887 RUF5-1 RUF5-1 yes 975 241 258 39.274845 262.904589 151.089717 2.179234908 0.434852 211 15 17821 YKR057W intron no 422 281 300 31.140471 296.167979 163.654225 2.213927222 0.001103 211 16 925 Glu3 GluTTC_ii 3_flank no 272 31.004611 291.7297 161.3671555 2.207815144 0.024337 211 17 17297 YHR141C intron no 541 461 479 30.880888 286.845941 158.8634145 2.201023893 0.051245 211 18 12039 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7081 7098 32.751547 272.446982 152.5992645 2.18355244 0.207481 211 19 15085 MT_COX 2; ORF1 ORF1exon1 yes 2427 1876 1895 28.800113 298.712075 163.756094 2.214197471 -0.103254 211 20 19178 YPL079W intron no 521 241 260 34.765412 324.813185 179.7892985 2.254763838 -0.14128 211 21 21782 copy of SH14232 no 431 32.026838 342.099033 187.0629355 2.271987745 -0.300344 211 22 16042 YDL191W intron no 591 301 318 39.404294 317.813883 178.6090885 2.251903554 -0.068977 211 23 9777 RUF4 RUF4 yes 988 661 673 42.038753 277.103103 159.570928 2.202953771 0.319935 211 24 7849 snoRNA cluster1 snR74/intergenic no 1574 1041 1062 29.319364 309.054587 169.1869755 2.228366927 -0.14024 211 25 4854 snR8 snR8 yes 390 51 65 918.646693 1552.129026 1235.38786 3.091803329 -0.347525 211 26 20827 YKR094C spliced yes 40 5 22 32.448996 296.343891 164.3964435 2.215892418 0.042991 211 27 10241 RUF6 RUF6/3_flank no 1251 31.798865 257.916855 144.85786 2.160942065 0.246188 211 28 6302 snR42 snR42 yes 551 291 308 31.025104 272.761312 151.893208 2.181538355 0.133396 211 29 7346 snR68 5_flank no 336 34.532342 310.62082 172.576581 2.236981861 -0.030606 211 30 4278 telomerase RNA telomerase yes 1501 426 440 39.096852 282.334136 160.715494 2.206057748 0.256765 211 31 9484 RUF2 RUF2/3_flank no 468 32.534399 287.325195 159.929797 2.203929386 0.102639 211 32 11199 "rRNA(18S,5.8S,25S)" ITS1 no 7956 2881 2901 31.442691 295.195879 163.319285 2.21303747 0.017241 211 33 1415 Leu1 LeuCAA_i 3_flank no 315 32.520128 316.42046 174.470294 2.241721493 -0.101182 211 34 14380 MT_ORF9; ORF10 ORF10/3_flank no 578 466 488 30.259369 304.95055 167.6049595 2.224286865 -0.082673 211 35 6985 snR60 snR60 yes 304 6 24 36.800744 313.703947 175.2523455 2.243663839 -0.03885 211 36 8217 snoRNA cluster 3; snR51 yes 743 596 611 41.140631 299.371552 170.2560915 2.231102659 0.101992 211 37 2261 Phe2 PheGAA_ii 5_flank no 292 32.301266 265.656334 148.9788 2.173124472 0.231174 211 38 13244 MT_COX1 ai4 no 13084 7861 7877 34.510761 301.58544 168.0481005 2.225433608 0.042088 211 39 8040 snoRNA cluster 2 intergenic no 739 436 455 32.363985 313.996089 173.180037 2.238497828 -0.084167 211 40 6752 snR50 5_flank no 290 34.631918 269.279501 151.9557095 2.181717023 0.287306 211 41 21016 YMR033W spliced yes 40 9 29 32.463253 333.329594 182.8964235 2.262205213 -0.230564 211 42 6213 snR40 3_flank no 297 32.43525 274.561792 153.498521 2.186104195 0.183111 211 43 13227 MT_COX1 ai4 no 13084 7606 7625 30.125844 306.757337 168.4415905 2.226449334 -0.098168 211 44 10080 RUF6 RUF6 yes 1251 246 263 32.117632 310.884428 171.50103 2.234266733 -0.062718 211 45 17959 YLR185W intron no 459 161 177 38.344493 279.68436 159.0144265 2.201436527 0.272023 211 46 14184 MT_COB exon6 yes 7308 6946 6967 31.517553 301.588937 166.553245 2.221553099 -0.019724 211 47 20676 YIL106W spliced yes 40 13 32 29.052165 281.153207 155.102686 2.190619319 -0.009044 211 48 5129 snR11 snR11/3_flank no 458 32.913353 267.158672 150.0360125 2.176195513 0.248717 211 49 17406 YIL069C 3_exon no 509 461 473 47.130538 286.046769 166.5886535 2.221645418 0.244799 211 50 9463 RUF2 RUF2 yes 468 156 173 32.237222 345.448613 188.8429175 2.276100701 -0.321713 211 51 21800 copy of SH15070 no 2427 31.967112 387.987143 209.9771275 2.32217199 -0.645512 211 52 20820 YKR057W spliced yes 40 1 17 56.184956 300.18742 178.186188 2.250874037 0.156135 211 53 364 Asn1 AsnGTT 5_flank no 274 33.630236 278.670389 156.1503125 2.193542858 0.193543 211 54 2547 Pro2 ProTGG_i 5_flank no 303 33.553889 278.833014 156.1934515 2.193662822 0.190096 211 55 4914 snR9 5_flank no 387 35.566775 314.873575 175.220175 2.24358411 -0.052362 211 56 18463 YMR143W intron no 644 261 278 29.589587 265.052111 147.320849 2.168264213 0.097965 211 57 9702 RUF4 RUF4 yes 988 286 303 33.744526 392.557843 213.1511845 2.32868775 -0.671012 211 58 20699 YJL001W spliced yes 40 5 22 29.845507 390.98095 210.4132285 2.32307304 -0.67326 211 59 15338 YAL030W intron no 213 101 118 32.060332 327.00032 179.530326 2.254137819 -0.188358 211 60 16122 YDR064W intron no 639 361 380 32.261434 297.056061 164.6587475 2.216584808 0.032518 211 61 20897 YLR306W spliced yes 40 1 23 30.410264 341.517091 185.9636775 2.269428126 -0.317583 211 62 17325 YIL004C intron no 231 121 138 32.723637 321.693086 177.2083615 2.24848421 -0.13944 211 63 3837 RNaseP RNaseP yes 569 151 163 37.218342 267.345314 152.281828 2.182648081 0.371188 211 64 8350 snoRNA cluster4 snR53/3_flank no 638 536 557 35.461462 333.959746 184.710604 2.266491828 -0.217063 211 65 2586 Pro2 ProTGG_i 3_flank no 303 33.717358 286.084452 159.900905 2.203850922 0.147901 211 66 12843 MT_COX1 ai1 no 13084 1846 1865 34.139038 308.36921 171.254124 2.233641039 -0.017369 211 67 4328 telomerase RNA telomerase yes 1501 676 695 316.647578 552.202562 434.42507 2.63791488 0.127226 211 68 4933 snR9 snR9 yes 387 71 83 163.873471 373.786967 268.830219 2.429478086 0.269769 211 69 4303 telomerase RNA telomerase yes 1501 551 570 30.753929 263.348793 147.051361 2.167469048 0.166519 211 70 3340 Thr3 ThrTGT_i tRNA yes 272 46 63 30.886891 296.467038 163.6769645 2.213987562 -0.009293 211 71 15013 MT_COX 2; ORF1 COX2 no 2427 796 812 35.392295 297.616804 166.5045495 2.221426104 0.085269 211 72 420 Asp1 AspGTC_i 5_flank no 271 33.012443 297.218112 165.1152775 2.217787259 0.055544 211 73 6993 snR60 snR60 yes 304 46 65 32.791483 347.986196 190.3888395 2.279641487 -0.339165 211 74 4334 telomerase RNA telomerase yes 1501 706 725 32.518166 329.51623 181.017198 2.257719838 -0.201428 211 75 8325 snoRNA cluster4 intergenic no 638 411 428 30.043347 292.195156 161.1192515 2.207147436 -0.011486 211 76 6473 snR45 3_flank no 372 31.968596 268.916451 150.4425235 2.17737061 0.198847 211 77 5490 snR32 snR32 yes 388 111 127 33.906467 320.286833 177.09665 2.248210346 -0.11391 211 78 14303 MT_VAR1 VAR1 yes 1467 751 777 29.432248 320.160666 174.796457 2.242532626 -0.201229 211 79 14293 MT_VAR1 VAR1 yes 1467 601 627 29.325599 314.8798 172.1026995 2.235787682 -0.174398 211 80 1969 Lys2 LysCTT_ii tRNA yes 273 46 60 134.253687 346.896541 240.575114 2.3812507 0.272535 211 81 11134 "rRNA(18S,5.8S,25S)" 18S yes 7956 2556 2571 59.234912 264.501338 161.868125 2.209161336 0.501266 211 82 19382 YPR043W intron no 503 221 238 31.298545 262.490596 146.8945705 2.167005744 0.19814 211 83 9451 RUF2 RUF2 yes 468 96 110 31.228174 257.410651 144.3194125 2.159324752 0.220666 211 84 7968 snoRNA cluster 2 5_flank no 739 76 93 31.122382 287.585915 159.3541485 2.202363374 0.054636 211 85 20972 YML034W spliced yes 40 9 26 33.08977 285.557372 159.323571 2.202280032 0.131676 211 86 20203 YDR025W spliced yes 40 17 33 64.605394 298.068069 181.3367315 2.258485784 0.218702 211 87 3746 Val4 ValTAC 5_flank no 274 32.746426 290.484455 161.6154405 2.20848285 0.089288 211 88 12578 MT_15S 15S yes 1848 421 439 36.741854 324.312296 180.527075 2.256542346 -0.13192 211 89 962 Gly1 GlyCCC_i tRNA/3_flank no 272 34.502535 265.125481 149.814008 2.175552423 0.312022 211 90 15886 YDL082W intron no 465 261 277 40.531641 283.895725 162.213683 2.210087485 0.248936 211 91 16126 YDR064W intron no 639 441 460 32.114767 304.705808 168.4102875 2.226368617 -0.019053 211 92 13280 MT_COX1 exon5a yes 13084 8401 8420 31.909684 325.473983 178.6918335 2.252104705 -0.178746 211 93 15701 YBR220C intron no 521 181 200 31.660712 322.53415 177.097431 2.248212261 -0.159565 211 94 13349 MT_COX1 ai5a/intronic no 13084 9436 9462 29.370768 325.465475 177.4181215 2.248997977 -0.23367 211 95 18251 YML034W intron no 226 121 143 32.030207 272.922827 152.476517 2.183202963 0.181013 211 96 12672 MT_Trp 5_flank no 274 1 29 31.662252 309.686575 170.6744135 2.232168419 -0.063724 211 97 17222 YHR041C intron no 201 121 142 35.143924 262.678475 148.9111995 2.172927362 0.348327 211 98 20376 YER179W spliced yes 40 17 34 35.649533 294.345631 164.997582 2.21747758 0.115581 211 99 270 Arg4 ArgCCT 5_flank no 272 33.29625 301.796009 167.5461295 2.2241344 0.025529 211 100 20639 YHR141C spliced yes 40 21 37 42.22731 301.283049 171.7551795 2.234909843 0.086808 211 101 20911 YLR333C spliced yes 40 9 30 34.327712 327.272115 180.7999135 2.257198218 -0.16351 211 102 7306 snR66 snR66 yes 286 21 36 43.160915 328.201161 185.681038 2.268767555 -0.144812 211 103 387 Asn1 AsnGTT tRNA yes 274 16 29 39.143119 282.694761 160.91894 2.206607163 0.2541 211 104 18910 YOL120C intron no 547 401 423 31.59008 300.678721 166.1344005 2.220459569 -0.011759 212 2 3803 RNaseP 5_flank no 569 80.583657 338.043408 209.3135325 2.320797307 0.006996 212 3 13281 MT_COX1 exon5a yes 13084 8416 8433 30.324431 304.98543 167.6549305 2.22441633 -0.080641 212 4 1629 Leu5 LeuCAA_v tRNA yes 315 11 22 55.332035 314.041403 184.686719 2.266435666 0.034802 212 5 10026 RUF6 5_flank no 1251 54.266088 317.206697 185.7363925 2.268897006 0.003068 212 6 9984 RUF5-1 RUF5-1 yes 975 726 747 28.062337 336.341373 182.201855 2.260552794 -0.341776 212 7 9190 snR7 U5 RNA 3_flank no 415 32.420099 345.326352 188.8732255 2.276170397 -0.318766 212 8 3364 Thr4 ThrTGT_ii 5_flank no 272 32.863951 274.993335 153.928643 2.187319441 0.193931 212 9 14269 MT_VAR1 VAR1 yes 1467 241 263 29.212259 272.596676 150.9044675 2.178702097 0.04065 212 10 8293 snoRNA cluster4 intergenic no 638 251 267 51.583928 378.261848 214.922888 2.332282668 -0.464082 212 11 7777 snoRNA cluster1 intergenic no 1574 681 700 39.559281 329.590857 184.575069 2.266173039 -0.168811 212 12 2793 Pro6 ProTGG_v intron/tRNA no 302 i20 43 104.571408 418.5272 261.549304 2.417553569 -0.314757 212 13 21334 YPR063C spliced yes 40 5 20 45.540062 287.094435 166.3172485 2.220937292 0.229882 212 14 8956 snR17a / U3a U3a yes 690 66 83 31.328629 303.252269 167.290449 2.223471147 -0.036129 212 15 11280 "rRNA(18S,5.8S,25S)" ITS2 no 7956 3286 3305 49.252052 344.079514 196.665783 2.293728806 -0.236207 212 16 14485 MT_21S 21S_rRNA3 yes 4639 1486 1507 33.074511 347.637477 190.355994 2.279566557 -0.335579 212 17 20870 YLR128W spliced yes 40 9 26 30.964738 331.500692 181.232715 2.258236597 -0.236535 212 18 11334 "rRNA(18S,5.8S,25S)" 25S yes 7956 3556 3574 32.840678 303.755795 168.2982365 2.226079565 0.003828 212 19 8815 LSR1 / U2 RNA U2 yes 1375 716 733 34.779942 330.282701 182.5313215 2.261337398 -0.1879 212 20 4847 snR8 snR8 yes 390 16 32 32.890586 264.120857 148.5057215 2.171743186 0.266985 212 21 539 Cys1 CysGCA 5_flank/tRNA no 272 45.107607 280.932725 163.020166 2.212241331 0.288035 212 22 1506 Leu3 LeuCAA_iii tRNA yes 314 1 13 51.738468 281.614736 166.676602 2.221874638 0.302536 212 23 6444 snR45 snR45 yes 372 66 78 34.060281 313.452147 173.756214 2.239940345 -0.058729 212 24 1915 Lys1 LysCTT_i tRNA yes 272 31 50 32.595152 287.782822 160.188987 2.204632655 0.101657 212 25 12226 5S rRNA NTS2 no 1420 86 103 33.181214 278.967784 156.074499 2.19333195 0.177543 212 26 11649 "rRNA(18S,5.8S,25S)" 25S yes 7956 5131 5149 32.631702 286.412346 159.522024 2.202820651 0.111616 212 27 16139 YDR092W intron no 368 61 77 35.216447 330.087853 182.65215 2.261624789 -0.185112 212 28 8330 snoRNA cluster4 intergenic/snR53 no 638 436 458 32.229597 297.878506 165.0540515 2.217626189 0.026397 212 29 11338 "rRNA(18S,5.8S,25S)" 25S yes 7956 3576 3589 73.599538 320.999315 197.2994265 2.295125823 0.085882 212 30 12563 MT_15S 15S yes 1848 196 213 32.490999 326.830632 179.6608155 2.254453367 -0.18155 212 31 5957 snR36 snR36 yes 555 241 257 32.515121 303.478547 167.996834 2.225301097 0.001315 212 32 10746 "rRNA(18S,5.8S,25S)" 5_ETS no 7956 616 629 45.808362 286.75341 166.280886 2.22084233 0.233979 212 33 8908 LSR1 / U2 RNA 3_flank no 1375 34.639236 342.646748 188.642992 2.275640676 -0.290956 212 34 8267 snoRNA cluster4 snR67 yes 638 121 133 45.602129 267.659251 156.63069 2.194876861 0.424248 212 35 5756 snR35 5_flank no 740 52.110798 293.603868 172.857333 2.237687808 0.19424 212 36 17816 YKR057W intron no 422 181 198 32.16867 282.865947 157.5173085 2.197328282 0.119632 212 37 13573 MT_COX1 exon6 yes 13084 12796 12815 32.124829 296.381835 164.253332 2.215514188 0.032271 212 38 3056 Ser3 SerCGA 5_flank no 301 34.321367 343.361428 188.8413975 2.276097206 -0.297619 212 39 3457 Trp1 TrpCCA 3_flank no 306 34.379493 362.110871 198.245182 2.297202641 -0.446017 212 40 7178 snR64 5_flank no 301 34.460395 299.905141 167.182768 2.223191511 0.055291 212 41 11831 "rRNA(18S,5.8S,25S)" 25S yes 7956 6041 6054 28488.30937 28479.29695 28483.80316 4.454597976 -0.859939 212 42 15348 YBL018C intron no 175 101 122 32.324196 300.123046 166.223621 2.220692739 0.015636 212 43 21545 copy of SH4254 no 1501 32.250229 306.770518 169.5103735 2.229196281 -0.028091 212 44 10172 RUF6 RUF6 yes 1251 706 718 45.254435 259.753033 152.503734 2.183280477 0.507326 212 45 10299 RUF7 RUF7 yes 700 106 127 31.873025 296.987218 164.4301215 2.215981378 0.020297 212 46 12520 MT_ORF6 + ORF7 (hypothetical) MT_ORF6_7 yes 664 196 212 51.064438 306.968495 179.0164665 2.252892981 0.071752 212 47 10407 RUF8 5_flank no 1151 35.560637 328.913935 182.237286 2.260637239 -0.17427 212 48 2594 Pro3 ProTGG_ii 5_flank no 303 162.538654 423.691752 293.115203 2.467038345 0.00622 212 49 15578 YBR084C intron no 606 321 340 30.651894 383.010919 206.8314065 2.315616485 -0.613281 212 50 11925 "rRNA(18S,5.8S,25S)" 25S yes 7956 6511 6526 37.600026 279.060134 158.33008 2.199563431 0.269427 212 51 17095 YHL001W intron no 498 281 295 60.0309 292.98917 176.510035 2.246769401 0.238613 212 52 20830 YKR094C spliced yes 40 17 36 29.874126 275.830487 152.8523065 2.184271996 0.059757 212 53 1577 Leu4 LeuCAA_iv intron/tRNA no 314 i18 40 41.916877 321.492277 181.704577 2.259365867 -0.092326 212 54 2084 Lys4 LysTTT_ii tRNA/3_flank no 296 39.766097 320.730762 180.2484295 2.255871489 -0.093323 212 55 3529 Tyr2 TyrGTA_ii 5_flank no 289 29.613182 334.91656 182.264871 2.260702973 -0.280349 212 56 13668 MT_ATP6 ATP6 yes 980 826 843 35.710084 305.09947 170.404777 2.231481765 0.027604 212 57 1685 Leu6 LeuGAG 5_flank/tRNA no 282 33.755896 319.456038 176.605967 2.247005373 -0.109335 212 58 8695 LSR1 / U2 RNA U2 yes 1375 116 135 131.581243 496.460969 314.021106 2.496958839 -0.495883 212 59 3085 Ser3 SerCGA 3_flank no 301 29.906252 341.992462 185.949357 2.269394681 -0.32794 212 60 9644 RUF4 5_flank/RUF4 no 988 32.094541 288.273182 160.1838615 2.204618759 0.08236 212 61 14003 MT_COB intronic no 7308 4231 4255 34.342756 377.796857 206.0698065 2.314014363 -0.563379 212 62 21642 copy of SH8352 no 638 55.502524 365.215533 210.3590285 2.322961156 -0.349203 212 63 12429 5S rRNA NTS2 no 1420 1101 1118 32.80416 274.491827 153.6479935 2.186526893 0.19539 212 64 7634 snR189 3_flank no 389 39.5266 283.591564 161.559082 2.208331377 0.249638 212 65 20906 YLR316C spliced yes 40 13 30 33.571828 308.776333 171.1740805 2.233438004 -0.027567 212 66 2162 Met2 MetCAT_ii 5_flank no 272 31.846067 316.459299 174.152683 2.24093017 -0.110158 212 67 6443 snR45 snR45 yes 372 61 73 43.280988 282.895616 163.088302 2.212422811 0.264789 212 68 6117 snR39B 5_flank no 296 32.615921 290.032437 161.324179 2.207699464 0.087985 212 69 8536 snR19 / U1 RNA U1 yes 868 176 195 30.636408 313.472036 172.054222 2.235665334 -0.120486 212 70 12151 "rRNA(18S,5.8S,25S)" NTS1 no 7956 7641 7659 32.995941 335.178231 184.087086 2.265023323 -0.237492 212 71 9262 snR6 / U6 RNA 3_flank no 312 32.972131 299.814134 166.3931325 2.221135398 0.037761 212 72 2641 Pro3 ProTGG_ii 3_flank no 303 32.81553 319.359532 176.087531 2.245728604 -0.120286 212 73 5951 snR36 snR36 yes 555 211 228 34.776767 325.223132 179.9999495 2.255272383 -0.144775 212 74 1811 Leu8 LeuTAG_i tRNA yes 301 53 68 34.438862 290.716532 162.577697 2.211060967 0.131934 212 75 1526 Leu3 LeuCAA_iii tRNA/3_flank no 314 31.905991 303.091804 167.4988975 2.224011953 -0.016085 212 76 18474 YMR143W intron no 644 481 497 31.585396 277.273232 154.429314 2.188729742 0.137293 212 77 4843 snR8 5_flank/snR8 no 390 31.306224 295.345233 163.3257285 2.213054604 0.011768 212 78 6989 snR60 snR60 yes 304 26 44 31.08594 249.873253 140.4795965 2.147613251 0.253147 212 79 11735 "rRNA(18S,5.8S,25S)" 25S yes 7956 5561 5576 12830.32482 13226.13407 13028.22944 4.114885398 -0.561419 212 80 5752 snR35 5_flank no 740 30.835928 256.413639 143.6247835 2.157229387 0.206193 212 81 17928 YLR078C 3_exon no 189 141 157 32.878745 253.056844 142.9677945 2.155238218 0.323409 212 82 3330 Thr3 ThrTGT_i 5_flank/tRNA no 272 32.83345 244.086477 138.4599635 2.141324213 0.369327 212 83 16588 YFL034C intron no 421 121 138 32.775563 266.67811 149.7268365 2.175299649 0.247651 212 84 186 Arg2 ArgACG_ii tRNA yes 273 46 62 32.689953 262.436691 147.563322 2.168978424 0.265996 212 85 3165 Ser5 SerTGA 5_flank no 282 30.499487 277.825748 154.1626175 2.187979076 0.082349 212 86 4137 SRP SRP yes 875 576 588 34.526264 267.855028 151.190646 2.179524923 0.293881 212 87 4416 telomerase RNA telomerase yes 1501 1116 1132 32.333899 271.877385 152.105642 2.182145323 0.197933 212 88 12445 5S rRNA NTS2 no 1420 1181 1195 67.516549 313.790494 190.6535215 2.280244831 0.105558 212 89 7921 snoRNA cluster1 snR72 yes 1574 1401 1420 30.087147 298.805054 164.4461005 2.21602358 -0.05115 212 90 18998 YOR122C intron no 309 141 157 32.039354 275.007078 153.523216 2.186174059 0.167304 212 91 17999 YLR287C intron no 530 161 178 31.91244 322.402698 177.157569 2.248359712 -0.155279 212 92 3931 RNase MRP RNaseMRP yes 540 71 87 33.766045 308.915673 171.340859 2.23386094 -0.026294 212 93 20308 YER003C spliced yes 40 25 40 39.575935 279.684481 159.630208 2.20311508 0.28511 212 94 13748 MT_COB exon1 yes 7308 406 425 33.214893 284.897625 159.056259 2.201550764 0.139876 212 95 21385 Phe1_5 spliced yes 40 1 13 116.155923 301.450349 208.803136 2.319737017 0.482485 212 96 9313 RUF1 RUF1 yes 750 141 158 32.459384 306.357002 169.408193 2.22893441 -0.02208 212 97 15557 YBR082C intron no 195 81 100 33.956857 294.882491 164.419674 2.215953783 0.090935 212 98 18074 YLR344W intron no 547 241 261 34.433755 389.824648 212.1292015 2.326600457 -0.648968 212 99 20752 YJR021C spliced yes 40 13 28 40.530053 310.429363 175.479708 2.244226903 -0.000717 212 100 21119 YNL112W spliced yes 40 1 13 41.840789 311.045101 176.442945 2.246604298 -0.001969 212 101 13130 MT_COX1 ai3 no 13084 6151 6168 37.64094 350.155999 193.8984695 2.287574381 -0.341914 212 102 13129 MT_COX1 ai3 no 13084 6136 6157 31.771965 315.949025 173.860495 2.240200912 -0.107134 212 103 17972 YLR185W 3_exon no 459 421 437 33.271787 298.379032 165.8254095 2.219651078 0.053365 212 104 972 Gly1 GlyCCC_i 3_flank no 272 32.112592 300.31967 166.216131 2.220673169 0.007572 213 2 13840 MT_COB bi2 no 7308 1786 1807 28.035207 314.264009 171.149608 2.233375909 -0.217783 213 3 20514 YGR029W spliced yes 40 17 32 34.016232 272.166927 153.0915795 2.184951304 0.248938 213 4 18976 YOR096W intron no 501 201 217 32.636201 306.290875 169.463538 2.229076269 -0.019298 213 5 17091 YHL001W intron no 498 201 215 252.902416 615.646047 434.2742315 2.63776406 -0.309146 213 6 19640 RNA14 2.2 RNA14 2.2 yes 401 301 318 29.863706 278.810032 154.336869 2.188469686 0.044908 213 7 21167 YNL302C spliced yes 40 17 32 36.194435 346.897216 191.5458255 2.282272692 -0.321392 213 8 18653 YNL112W intron no 1102 241 260 30.755653 215.977811 123.366732 2.09119806 0.39667 213 9 4205 telomerase RNA telomerase yes 1501 61 83 31.087008 252.933549 142.0102785 2.152319779 0.23699 213 10 5791 snR35 snR35 yes 740 141 157 34.330493 285.793792 160.0621425 2.204288626 0.16859 213 11 14753 MT_ORF11; Leu; Gln ORF11 yes 716 181 207 28.42463 330.257965 179.3412975 2.253680307 -0.294775 213 12 16337 YDR500C 5_exon no 439 21 37 29.470645 262.69834 146.0844925 2.164604116 0.103585 213 13 5 Ala1 AlaAGC 5_flank no 273 31.466988 326.306181 178.8865845 2.252577772 -0.190841 213 14 321 Arg5 ArgTCT 5_flank no 272 31.401889 252.110938 141.7564135 2.151542717 0.256987 213 15 1713 Leu6 LeuGAG 3_flank no 282 32.307444 293.763255 163.0353495 2.212281779 0.054529 213 16 7693 snoRNA cluster1 intergenic no 1574 261 278 32.182324 274.539845 153.3610845 2.185715171 0.175084 213 17 18899 YOL120C intron no 547 181 199 31.055391 312.837211 171.946301 2.235392837 -0.102569 213 18 4413 telomerase RNA telomerase yes 1501 1101 1118 30.952642 277.365292 154.158967 2.187968792 0.107473 213 19 4170 SRP 3_flank no 875 44.846254 316.481679 180.6639665 2.256871541 -0.039618 213 20 20854 YLR061W spliced yes 40 17 33 34.981854 274.98878 154.985317 2.190290556 0.259176 213 21 5293 snR30 snR30 yes 801 316 330 53.403499 370.973828 212.1886635 2.326722177 -0.402518 213 22 3863 RNaseP RNaseP yes 569 281 293 39.772098 280.369238 160.070668 2.204311757 0.281114 213 23 16714 YGL031C intron no 556 421 438 34.240034 344.310544 189.275289 2.277093918 -0.305548 213 24 10811 "rRNA(18S,5.8S,25S)" 18S yes 7956 941 960 32.78407 306.032882 169.408476 2.228935136 -0.015343 213 25 12686 MT_Trp 3_flank no 274 211 227 31.24886 273.128891 152.1888755 2.182382908 0.142768 213 26 6346 snR43 5_flank no 409 31.738456 348.913042 190.325749 2.279497548 -0.35283 213 27 5437 snR31 3_flank no 425 32.111833 277.746638 154.9292355 2.190133378 0.151413 213 28 8066 snoRNA cluster 2 snR61 yes 739 566 583 32.35728 267.817057 150.0871685 2.176343564 0.223079 213 29 1322 Ile3 IleTAT_ii 5_flank/tRNA no 333 30.272666 301.159511 165.7160885 2.219364674 -0.059182 213 30 8072 snoRNA cluster 2 snR61 yes 739 596 615 36.984839 314.998084 175.9914615 2.245491598 -0.049897 213 31 9994 RUF5-1 3_flank no 975 34.74124 294.818849 164.7800445 2.216904616 0.100924 213 32 15462 YBL087C intron no 604 401 417 32.459544 270.742871 151.6012075 2.18070266 0.209682 213 33 21676 copy of SH9839 no 975 30.158957 312.972425 171.565691 2.234430444 -0.133951 213 34 14462 MT_21S 21S_rRNA3 yes 4639 1141 1168 30.051801 316.237358 173.1445795 2.2384089 -0.156775 213 35 1204 Ile1 IleAAT 5_flank no 274 33.228433 277.659828 155.4441305 2.191574328 0.187681 213 36 19455 CYC1 CYC1 yes 400 201 223 32.028491 322.843839 177.436165 2.249042142 -0.157155 213 37 20957 YML024W spliced yes 40 21 37 42.922851 305.846623 174.384737 2.241508471 0.047898 213 38 5907 snR36 5_flank/snR36 no 555 38.531262 322.000936 180.266099 2.255914061 -0.107593 213 39 5419 snR31 snR31 yes 425 161 177 34.210452 287.803251 161.0068515 2.206844357 0.152032 213 40 5959 snR36 snR36 yes 555 251 265 32.107425 295.932162 164.0197935 2.214896261 0.034501 213 41 20023 YBR119W spliced yes 40 5 21 38.794457 287.735652 163.2650545 2.212893238 0.206716 213 42 4999 snR10 snR10 yes 445 26 42 32.219042 267.613589 149.9163155 2.1758489 0.217439 213 43 14424 MT_21S 21S_rRNA3 yes 4639 571 587 52.086001 310.385277 181.235639 2.258243603 0.047396 213 44 4004 SRP 5_flank no 875 32.077218 306.357343 169.2172805 2.228444711 -0.030227 213 45 21321 YPR028W spliced yes 40 1 20 37.363058 308.80644 173.084749 2.238258803 0.0065 213 46 11450 "rRNA(18S,5.8S,25S)" 25S yes 7956 4136 4153 33.849107 367.71804 200.7835735 2.302728179 -0.490371 213 47 292 Arg4 ArgCCT tRNA yes 272 56 68 33.570765 318.862779 176.216772 2.246047241 -0.107018 213 48 16151 YDR092W intron/exon no 368 301 319 31.135442 285.122509 158.1289755 2.199011457 0.070913 213 49 13799 MT_COB intronic no 7308 1171 1190 30.8346 289.906701 160.3706505 2.205124891 0.030137 213 50 19696 Negative Control no 60 NA #VALUE! 34.717188 273.836093 154.2766405 2.188300173 0.25898 213 51 10214 RUF6 RUF6 yes 1251 916 935 30.269316 324.705072 177.487194 2.249167023 -0.197896 213 52 1171 His1 HisGTG 3_flank no 272 30.044742 302.045003 166.0448725 2.220225469 -0.07248 213 53 8119 snoRNA cluster 3; snR41 yes 743 106 125 31.920412 355.882347 193.9013795 2.287580899 -0.404315 213 54 4087 SRP SRP yes 875 326 338 62.653115 291.645402 177.1492585 2.248339339 0.2632 213 55 896 Glu3 GluTTC_ii 5_flank/tRNA no 272 29.7139 307.542997 168.6284485 2.226930844 -0.117254 213 56 19649 SIR1 2.2 SIR1 2.2 yes 401 101 118 27.668438 283.205152 155.436795 2.191553833 -0.094553 213 57 2028 Lys3 LysTTT_i tRNA/3_flank no 296 35.812619 319.458794 177.6357065 2.249530268 -0.092128 213 58 6249 snR42 snR42 yes 551 26 42 35.846375 293.525403 164.685889 2.216656389 0.124757 213 59 7003 snR60 snR60/3_flank no 304 29.783819 309.706112 169.7449655 2.229796902 -0.127705 213 60 18569 YNL012W intron no 184 81 97 33.96049 276.723698 155.342094 2.191289155 0.216654 213 61 7239 snR65 5_flank no 300 34.116306 305.566053 169.8411795 2.230042997 0.004923 213 62 4668 snR3 3_flank no 395 34.347309 300.273732 167.3105205 2.22352325 0.050895 213 63 12372 5S rRNA NTS2 no 1420 816 830 32.573909 280.999877 156.786893 2.195309754 0.144891 213 64 6708 snR49 snR49 yes 365 66 82 35.05984 276.242917 155.6513785 2.192152971 0.253123 213 65 15822 YDL064W intron no 210 81 97 37.664428 307.192132 172.42828 2.236608496 0.021878 213 66 7584 snR189 5_flank/snR189 no 389 31.675527 329.708331 180.691929 2.256938754 -0.21374 213 67 191 Arg2 ArgACG_ii tRNA/3_flank no 273 32.092562 307.6788 169.885681 2.230156775 -0.037653 213 68 14072 MT_COB bi4 no 7308 5266 5285 32.445986 326.030127 179.2380565 2.253430226 -0.176064 213 69 495 Asp2 AspGTC_ii tRNA yes 272 36 49 50.656364 299.468877 175.0626205 2.243193425 0.135076 213 70 19802 Negative Control no 60 NA #VALUE! 32.793658 297.394729 165.0941935 2.217731799 0.047507 213 71 16860 YGL187C intron no 442 61 80 32.746231 294.855356 163.8007935 2.214316001 0.061784 213 72 20172 YDL137W spliced yes 40 9 25 37.015445 281.592272 159.3038585 2.202226295 0.240615 213 73 10488 RUF8 RUF8 yes 1151 366 382 38.896975 313.712774 176.3048745 2.24626432 -0.03387 213 74 16370 YER003C 5_exon no 193 21 37 31.912753 268.820578 150.3666655 2.177151569 0.196605 213 75 1635 Leu5 LeuCAA_v tRNA-intron no 315 i3 i20 31.53027 315.510542 173.520406 2.239350555 -0.106864 213 76 14734 MT_Cys; His tRNAhis yes 456 331 347 41.846807 361.132701 201.489754 2.304252967 -0.406107 213 77 15563 YBR084C 5_exon no 606 21 39 39.28588 326.101787 182.6938335 2.261723889 -0.140607 213 78 20355 YER117W spliced yes 40 13 31 53.727976 330.675257 192.2016165 2.283757036 -0.107533 213 79 14144 MT_COB intronic no 7308 6346 6366 57.616113 355.375533 206.495823 2.314911271 -0.266805 213 80 21352 YPR132W spliced yes 40 25 39 44.824319 241.902123 143.363221 2.15643775 0.695335 213 81 4902 snR9 5_flank no 387 40.570896 264.289284 152.43009 2.183070706 0.435313 213 82 15706 YBR220C intron no 521 281 298 32.239773 303.509408 167.8745905 2.224984966 -0.007753 213 83 206 Arg2 ArgACG_ii 3_flank no 273 50.875045 259.835568 155.3553065 2.191326092 0.519304 213 84 9447 RUF2 RUF2 yes 468 76 88 38.336246 287.760045 163.0481455 2.212315864 0.201587 213 85 11159 "rRNA(18S,5.8S,25S)" 18S/ITS1 no 7956 2681 2703 30.021755 317.402547 173.712151 2.239830198 -0.164591 213 86 9520 RUF3 5_flank/RUF3 no 631 31.998503 297.344622 164.6715625 2.216618606 0.022185 213 87 13479 MT_COX1 intronic no 13084 11386 11410 27.850997 277.223132 152.5370645 2.183375384 -0.055906 213 88 20037 YBR186W spliced yes 40 13 27 31.888837 278.666028 155.2774325 2.191108341 0.138051 213 89 6160 snR39B 3_flank no 296 31.850265 335.628179 183.739222 2.264201873 -0.25544 213 90 674 Gln3 GlnTTG_ii 5_flank no 272 29.761301 296.651021 163.206161 2.212736549 -0.0492 213 91 5252 snR30 snR30 yes 801 111 126 31.702205 264.779448 148.2408265 2.170967828 0.20649 213 92 19763 Negative Control no 60 NA #VALUE! 37.625781 246.220514 141.9231475 2.152053234 0.538712 213 93 2595 Pro3 ProTGG_ii 5_flank no 303 94.261188 311.21051 202.735849 2.30693055 0.285648 213 94 19963 YBL059W spliced yes 40 9 25 35.024549 298.257405 166.640977 2.221781803 0.07563 213 95 17403 YIL069C intron no 509 401 420 32.667457 330.276955 181.472206 2.258810119 -0.20523 213 96 1529 Leu3 LeuCAA_iii 3_flank no 314 34.204062 321.880255 178.0421585 2.250522851 -0.122557 213 97 12447 5S rRNA NTS2 no 1420 1191 1207 35.65375 319.212945 177.4333475 2.249035246 -0.090382 213 98 5607 snR34 5_flank no 750 37.028408 358.588839 197.8086235 2.296245221 -0.409527 213 99 7498 snR71 3_flank no 290 36.476282 309.909484 173.192883 2.238530042 -0.005656 213 100 10934 "rRNA(18S,5.8S,25S)" 18S yes 7956 1556 1573 32.260437 281.894936 157.0776865 2.196114496 0.128938 213 101 9227 snR6 / U6 RNA U6 yes 312 6 20 33.650604 312.37756 173.014082 2.238081453 -0.055253 213 102 3314 Thr3 ThrTGT_i 5_flank no 272 32.354662 302.154534 167.254598 2.223378066 0.004199 213 103 2854 Pro7 ProTGG_vi tRNA yes 303 46 58 63.934462 298.503807 181.2191345 2.258204052 0.211282 213 104 7470 snR71 5_flank no 290 29.080121 255.926935 142.503528 2.153825616 0.110224 214 2 5197 snR13 3_flank no 324 29.881719 348.366142 189.1239305 2.276746485 -0.373914 214 3 938 Gly1 GlyCCC_i 5_flank no 272 34.951633 283.506975 159.229304 2.202022997 0.200113 214 4 21707 copy of SH11082 no 7956 14760.03817 17087.14295 15923.59056 4.202041002 -0.816294 214 5 9222 snR6 / U6 RNA 5_flank no 312 33.056291 310.260206 171.6582485 2.234664677 -0.045823 214 6 18482 YMR194W 5_exon no 563 1 19 71.756886 412.003068 241.879977 2.383599919 -0.51968 214 7 15947 YDL125C intron no 211 121 140 38.006251 358.184867 198.095559 2.296874739 -0.402723 214 8 19212 YPL081W intron no 601 401 415 32.579958 299.606417 166.0931875 2.22035182 0.027038 214 9 19175 YPL079W intron no 521 181 202 38.969527 501.351155 270.160341 2.431621596 -1.276494 214 10 182 Arg2 ArgACG_ii tRNA yes 273 26 40 41.331355 349.788048 195.5597015 2.291279366 -0.324894 214 11 20534 YGR148C spliced yes 40 17 34 87.648151 448.13519 267.8916705 2.42795921 -0.58679 214 12 17383 YIL069C 5_exon no 509 1 15 36.578313 310.202764 173.3905385 2.239025395 -0.008044 214 13 16932 YGR027C 5_exon no 412 1 20 31.514273 313.226176 172.3702245 2.236462247 -0.08954 214 14 2268 Phe2 PheGAA_ii 5_flank no 292 38.598786 312.895406 175.747096 2.244888158 -0.027284 214 15 2090 Lys4 LysTTT_ii 3_flank no 296 30.380389 276.192876 153.2866325 2.185504283 0.084119 214 16 18889 YOL047C 3_exon no 163 141 161 33.284086 312.446236 172.865161 2.237707475 -0.060331 214 17 18864 YNR053C intron no 631 261 273 114.256454 378.599547 246.4280005 2.391690053 -0.033541 214 18 4909 snR9 5_flank no 387 60.293666 298.417993 179.3558295 2.253715497 0.192382 214 19 16486 YER102W intron no 460 361 382 30.988191 330.580068 180.7841295 2.257160302 -0.229349 214 20 15418 YBL059W intron no 169 81 98 29.085186 306.952545 168.0188655 2.225358048 -0.136048 214 21 1341 Ile3 IleTAT_ii intron/tRNA no 333 i49 42 33.36187 354.318654 193.840262 2.287443988 -0.387979 214 22 17550 YJL189W 5_exon no 486 1 20 33.817087 411.047433 222.43226 2.347197774 -0.796951 214 23 20883 YLR211C spliced yes 40 17 36 33.374574 396.636784 215.005679 2.332449931 -0.700936 214 24 19785 Negative Control no 60 NA #VALUE! 32.965074 325.267602 179.116338 2.253135202 -0.163705 214 25 13131 MT_COX1 ai3 no 13084 6166 6185 31.421831 330.315777 180.868804 2.257363667 -0.221618 214 26 5658 snR34 snR34 yes 750 211 227 33.006836 304.534733 168.7707845 2.227297269 -0.000411 214 27 3398 Thr4 ThrTGT_ii 3_flank no 272 32.269128 299.189387 165.7292575 2.219399185 0.019592 214 28 21614 copy of SH7315 no 286 34.71882 316.713836 175.716328 2.244812119 -0.076383 214 29 19363 YPR028W intron no 233 61 78 32.583302 298.571924 165.577613 2.219001617 0.033513 214 30 1917 Lys1 LysCTT_i tRNA yes 272 41 57 4443.948263 3592.29104 4018.119652 3.604022865 0.316683 214 31 741 Gln4 GlnTTG_iii 5_flank no 272 32.538479 321.397716 176.9680975 2.247894982 -0.139519 214 32 8148 snoRNA cluster 3; intergenic no 743 251 270 34.673582 307.622193 171.1478875 2.233371543 -0.004942 214 33 17556 YJL189W intron no 486 121 138 45.697168 316.684701 181.1909345 2.258136465 -0.037782 214 34 13472 MT_COX1 intronic no 13084 11281 11302 32.177069 316.843001 174.510035 2.241820406 -0.108871 214 35 665 Gln2 GlnTTG_i 3_flank no 272 32.029521 298.597353 165.313437 2.218308155 0.015456 214 36 18319 YML085C intron no 216 81 102 34.094153 345.294733 189.694443 2.278054609 -0.313914 214 37 19850 Negative Control no 60 NA #VALUE! 40.590964 304.16797 172.379467 2.236485534 0.056353 214 38 12762 MT_COX1 ai1 no 13084 631 648 47.184756 309.935779 178.5602675 2.251784828 0.02695 214 39 5561 snR33 snR33 yes 383 91 107 40.642433 346.564705 193.603569 2.286913359 -0.302709 214 40 8068 snoRNA cluster 2 snR61 yes 739 576 591 35.251986 289.957347 162.6046665 2.211133005 0.148059 214 41 3833 RNaseP RNaseP yes 569 131 146 38.673162 338.679756 188.676459 2.275717717 -0.246655 214 42 17042 YGR183C intron no 313 281 300 32.11814 331.235735 181.6769375 2.2592998 -0.219416 214 43 4822 snR5 3_flank no 404 32.122398 343.378134 187.750266 2.273580561 -0.308334 214 44 7636 snR189 3_flank no 389 32.060715 305.566615 168.813665 2.227407599 -0.026006 214 45 20750 YJR021C spliced yes 40 5 19 36.330827 293.969264 165.1500455 2.217878698 0.126581 214 46 6357 snR43 snR43 yes 409 26 42 33.948092 277.026904 155.487498 2.191695475 0.214257 214 47 16504 YER117W intron no 571 261 278 31.549678 325.874433 178.7120555 2.25215385 -0.186483 214 48 82 Ala2 AlaTGC tRNA yes 273 46 61 35.602053 310.188496 172.8952745 2.237783123 -0.014532 214 49 15224 MT_COX3 cox3 no 1010 781 800 31.019516 374.95656 202.988038 2.307470446 -0.552808 214 50 18651 YNL112W intron no 1102 201 227 37.081453 346.331663 191.706558 2.28263697 -0.313924 214 51 13725 MT_COB 5_flank no 7308 61 89 30.462309 319.116069 174.789189 2.242514567 -0.159292 214 52 8147 snoRNA cluster 3; intergenic no 743 246 267 32.303967 281.607187 156.955577 2.195776752 0.132227 214 53 5461 snR32 5_flank no 388 32.104549 298.311467 165.208008 2.218031095 0.019663 214 54 7871 snoRNA cluster1 snR73 yes 1574 1151 1165 72.126185 313.125245 192.625715 2.284714264 0.138479 214 55 3766 Val4 ValTAC tRNA yes 274 55 69 31.858969 280.680473 156.269721 2.193874837 0.123811 214 56 21885 copy of SH18600 no 549 29.740741 303.867543 166.804142 2.222206831 -0.094175 214 57 10609 RUF8 3_flank no 1151 35.826348 274.309737 155.0680425 2.190522305 0.288637 214 58 1511 Leu3 LeuCAA_iii tRNA/intron no 314 25 i2 52.271446 295.959496 174.115471 2.240837362 0.173901 214 59 21806 copy of SH15281 no 701 35.763448 277.959671 156.8615595 2.195516528 0.258456 214 60 11522 "rRNA(18S,5.8S,25S)" 25S yes 7956 4496 4514 66.872738 281.323905 174.0983215 2.240794584 0.377197 214 61 13943 MT_COB bi3 no 7308 3331 3353 29.773386 297.721589 163.7474875 2.214174645 -0.055409 214 62 7381 snR68 snR68/3_flank no 336 34.086601 301.423511 167.755056 2.224675618 0.038295 214 63 4144 SRP SRP yes 875 611 623 72.403304 333.460192 202.931748 2.307349996 -0.013449 214 64 21127 YNL130C spliced yes 40 9 26 32.706465 356.213704 194.4600845 2.28883047 -0.404694 214 65 8342 snoRNA cluster4 snR53 yes 638 496 517 31.022004 311.230467 171.1262355 2.233316597 -0.094212 214 66 3027 Ser2 SerAGA_ii 3_flank no 282 37.965952 282.323168 160.14456 2.204512191 0.244707 214 67 11769 "rRNA(18S,5.8S,25S)" 25S yes 7956 5731 5748 45.091604 298.622371 171.8569875 2.235167195 0.120486 214 68 5190 snR13 snR13/3_flank no 324 36.66417 277.280394 156.972282 2.195822972 0.274802 214 69 20926 YLR367W spliced yes 40 17 32 34.690774 301.829248 168.260011 2.225980913 0.042245 214 70 4371 telomerase RNA telomerase yes 1501 891 907 39.265376 309.408228 174.336802 2.241389075 0.005594 214 71 20213 YDR064W spliced yes 40 5 19 34.705447 283.175368 158.9404075 2.201234322 0.19688 214 72 21028 YMR116C spliced yes 40 9 26 36.698464 359.489091 198.0937775 2.296870834 -0.417679 214 73 14082 MT_COB bi4 no 7308 5416 5435 34.13164 353.289097 193.7103685 2.287152867 -0.377765 214 74 20028 YBR181C spliced yes 40 1 15 53.376432 292.939419 173.1579255 2.238442374 0.206115 214 75 11709 "rRNA(18S,5.8S,25S)" 25S yes 7956 5431 5446 54.83757 308.081344 181.459457 2.258779607 0.081739 214 76 19578 AEP2/ATP13 0.6 AEP2/ATP13 0.6 yes 401 261 277 37.04762 293.343167 165.1953935 2.217997933 0.13994 214 77 2008 Lys3 LysTTT_i 5_flank/tRNA no 296 38.701016 272.271302 155.486159 2.191691735 0.342241 214 78 5236 snR30 snR30 yes 801 31 45 1663.087676 2931.888209 2297.487943 3.361253241 -0.579126 214 79 2232 Phe1 PheGAA_i tRNA/intron no 292 36 i17 35.994416 310.906857 173.4506365 2.239175898 -0.015848 214 80 1892 Lys1 LysCTT_i 5_flank no 272 56.526427 333.395662 194.9610445 2.289947843 -0.112188 214 81 13256 MT_COX1 ai4 no 13084 8041 8067 29.649441 317.467262 173.5583515 2.239445516 -0.177997 214 82 17901 YLR061W intron no 489 81 100 37.798951 356.148744 196.9738475 2.294408568 -0.387865 214 83 739 Gln4 GlnTTG_iii 5_flank no 272 33.687804 381.574065 207.6309345 2.317292059 -0.593409 214 84 20343 YER093C-A spliced yes 40 13 28 45.95238 335.689155 190.8207675 2.280625638 -0.190259 214 85 21820 copy of SH16000 no 432 52.079119 319.669559 185.874339 2.269219437 -0.02916 214 86 20630 YHR123W spliced yes 40 13 34 48.943702 365.778458 207.36108 2.316727246 -0.39638 214 87 8316 snoRNA cluster4 intergenic no 638 366 385 41.745695 353.572695 197.659195 2.295917022 -0.350853 214 88 9579 RUF3 RUF3 yes 631 281 296 43.807575 319.463476 181.6355255 2.259200795 -0.068678 214 89 11734 "rRNA(18S,5.8S,25S)" 25S yes 7956 5556 5571 46330.05477 13881.03677 30105.54577 4.478646505 0.928923 214 90 219 Arg3 ArgCCG 5_flank no 272 37.66062 361.98599 199.823305 2.300646138 -0.432979 214 91 10964 "rRNA(18S,5.8S,25S)" 18S yes 7956 1706 1724 37.577474 316.922417 177.2499455 2.24858611 -0.065463 214 92 6225 snR42 5_flank no 551 39.439628 349.440196 194.439912 2.288785416 -0.329653 214 93 10897 "rRNA(18S,5.8S,25S)" 18S yes 7956 1371 1386 39.166332 302.556044 170.861188 2.232643422 0.067937 214 94 12895 MT_COX1 intronic no 13084 2626 2642 38.806543 345.061979 191.934261 2.283152505 -0.297373 214 95 10810 "rRNA(18S,5.8S,25S)" 18S yes 7956 936 953 46.31312 359.300631 202.8068755 2.307082674 -0.366519 214 96 16140 YDR092W intron no 368 81 97 37.88226 365.786074 201.834167 2.304994687 -0.460789 214 97 14922 MT_Tyr 3_flank no 284 226 247 33.49809 373.991271 203.7446805 2.309086279 -0.538587 214 98 11619 "rRNA(18S,5.8S,25S)" 25S yes 7956 4981 4994 27924.38065 4166.788824 16045.58474 4.205355548 2.310716 214 99 19220 YPL081W 3_exon no 601 561 578 36.214694 328.193901 182.2042975 2.260558616 -0.166482 214 100 20822 YKR057W spliced yes 40 9 24 44.936486 368.109258 206.522872 2.314968156 -0.438171 214 101 5211 snR30 5_flank no 801 35.188165 311.255326 173.2217455 2.238602411 -0.027859 214 102 11947 "rRNA(18S,5.8S,25S)" 25S yes 7956 6621 6636 390.557649 523.424932 456.9912905 2.659907923 0.453087 214 103 11963 "rRNA(18S,5.8S,25S)" 25S yes 7956 6701 6714 43.482613 311.005085 177.243849 2.248571173 0.003866 214 104 9030 snR17a / U3a U3a yes 690 436 453 39.590525 281.186557 160.388541 2.205173337 0.272026