Column Row SH # numerical values ncRNA oligo covers start of coverage end of coverage Cy5 Cy3 avg log I Ratio 2 2 SH4517 4517 U3b (snR17b) U3b 141 158 28.729167 73.675908 51.2025375 1.709291484 0.094025 2 3 SH16978 16978 YGR034W_7_555923_556666_INTRON_20_496 intron 31.138495 118.611243 31.138495 88.472748 59.8056215 1.776742008 0.004197 2 4 SH3333 3333 Thr3 tRNA 11 25 35.898791 83.293447 59.596119 1.775217979 0.28184 2 5 SH8340 8340 snoRNA cluster4 snR53 26.483495 98.981055 26.483495 73.49756 49.9905275 1.698887719 -0.059579 2 6 SH21200 21200 YOL127W spliced 30.056639 87.914366 58.9855025 1.770745284 -0.033337 2 7 SH1798 1798 Leu8 tRNA 16 31 44.686954 102.826394 73.756674 1.867801324 0.035821 2 8 SH18206 18206 YML024W_13_225889_226697_INTRON_4_401 intron 25.241393 91.887723 25.241393 67.64633 46.4438615 1.666928321 -0.071407 2 9 SH4186 4186 telomerase RNA 5' 25.790728 72.479116 49.134922 1.691390271 -0.097236 2 10 SH10076 10076 RUF6 RUF6 226 242 32.644678 96.155276 64.399977 1.808885712 -0.090969 2 11 SH19634 19634 RNA14 2.2 23.515564 70.197587 46.8565755 1.670770545 -0.241407 2 12 SH18535 18535 YMR230W_13_732413_733140_INTRON_53_462 intron 26.497169 106.826081 26.497169 81.328912 53.9130405 1.731693825 -0.157304 2 13 SH15542 15542 YBR078W_2_393082_394818_INTRON_59_388 intron 39.558007 163.36638 39.558007 124.808373 82.18319 1.914782995 -0.461628 2 14 SH10388 10388 RUF7 3' 29.012699 86.458123 57.735411 1.761442262 -0.054811 2 15 SH7133 7133 snR63 snR63 171 188 25.833884 69.536492 47.685188 1.678383499 -0.054244 2 16 SH11320 11320 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3486 3503 33275.34469 19775.22594 26525.28531 4.423660064 -0.202934 2 17 SH7668 7668 snoRNA cluster1 snR78 49.809187 668.912003 49.809187 620.102816 334.9560015 2.524987764 -3.113224 2 18 SH14460 14460 MT 21S rRNA 21S rRNA3 405.291711 1175.132863 405.291711 770.841152 588.0664315 2.769426389 -0.834251 2 19 SH7249 7249 snR65 snR65 21 40 26.123734 86.792652 56.458193 1.751726974 -0.249146 2 20 SH5392 5392 snR31 snR31 26 42 33.382969 83.89002 58.6364945 1.768167999 0.179632 2 21 SH9592 9592 RUF3 RUF3 346 360 38.870185 94.442541 66.656363 1.823841613 0.093391 2 22 SH863 863 Glu2 3' flank 25.730317 69.985133 47.857725 1.67995205 -0.068152 2 23 SH18333 18333 YML094W_13_82275_82849_INTRON_17_99 3' exon 28.309032 123.032504 28.309032 95.723472 62.016252 1.792505516 -0.245159 2 24 SH13596 13596 MT ATP8/AAP1 5' / ATP8 28.225528 104.305014 28.225528 77.079486 52.652507 1.721419055 0.015485 2 25 SH17637 17637 YJR094W-A_10_608000_608553_INTRON_3_277 3' exon 52.985473 175.386933 52.985473 123.40146 88.1934665 1.945436413 -0.173381 2 26 SH16884 16884 YGL189C_7_148970_148233_INTRON_1_368 intron 28.172824 103.895231 28.172824 76.722407 52.4476155 1.719725748 0.016612 2 27 SH1355 1355 Ile3 3' flank 32.381899 83.500786 57.9413425 1.762988554 0.146077 2 28 SH12096 12096 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7366 7388 27.178397 80.40801 53.7932035 1.730727408 -0.098073 2 29 SH21077 21077 YMR230W spliced 33.862783 85.766222 59.8145025 1.776806495 0.164516 2 30 SH107 107 Arg1 5' flank 24.911756 75.001024 49.95639 1.698591047 -0.196834 2 31 SH9250 9250 snR6 / U6 RNA 3' 28.655671 91.803407 60.229539 1.779809539 -0.164185 2 32 SH1368 1368 Leu1 5' flank 40.023676 104.53704 72.280358 1.859020295 -0.092008 2 33 SH18746 18746 YNL162W_14_331319_332151_INTRON_5_516 intron 29.920308 124.225915 29.920308 95.305607 62.6129575 1.796664218 -0.164301 2 34 SH19969 19969 YBL072C spliced 39.524776 96.99577 68.260273 1.834168021 0.052109 2 35 SH11097 11097 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2371 2386 43.978845 104.872324 74.4255845 1.871722254 -0.01783 2 36 SH21114 21114 YNL096C spliced 26.292899 82.103778 54.1983385 1.733985973 -0.181379 2 37 SH9847 9847 RUF5-1 RUF5-1 41 60 27.640194 86.179266 56.90973 1.755186525 -0.135727 2 38 SH13509 13509 MT COX1 intronic 27.124176 97.454312 27.124176 71.330136 49.227156 1.692204746 0.015179 2 39 SH21639 21639 copy of SH8349 28.540763 77.139858 52.8403105 1.722965361 0.035628 2 40 SH9821 9821 RUF5-1 5' 26.84491 71.4149 49.129905 1.691345924 -0.005891 2 41 SH10219 10219 RUF6 RUF6 941 958 26.812895 75.208031 51.010463 1.707659265 -0.057849 2 42 SH606 606 Gln1 71-72 + 3' flank 71 3' flank 30.985402 74.471412 52.728407 1.722044651 0.225722 2 43 SH17399 17399 YIL069C_9_232366_231550_INTRON_4_412 intron 37.598981 136.209766 37.598981 99.610785 68.604883 1.836355028 -0.04386 2 44 SH5618 5618 snR34 snR34 11 27 28.111331 72.31201 50.2116705 1.70080467 0.070902 2 45 SH7623 7623 snR189 186-189 + 3' 186 28.201803 73.998832 51.1003175 1.708423599 0.054738 2 46 SH11953 11953 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6651 6666 238.095573 239.368621 238.732097 2.377910813 0.3807 2 47 SH15172 15172 MT COX3 5' 33.154985 106.490537 33.154985 74.335552 53.7452685 1.730340237 0.355066 2 48 SH946 946 Gly1 5' flank 26.415846 77.132599 51.7742225 1.714113586 -0.110827 2 49 SH21355 21355 YPR187W spliced 373.726497 347.20779 360.4671435 2.556865685 0.344118 2 50 SH20129 20129 YDL082W spliced 30.67716 90.551008 60.614084 1.782573546 -0.0517 2 51 SH7739 7739 snoRNA cluster1 intergenic 28.627969 109.713857 28.627969 82.085888 55.3569285 1.743171985 -0.020845 2 52 SH20318 20318 YER044C-A spliced 28.686159 78.507418 53.5967885 1.729138768 0.027608 2 53 SH13740 13740 MT COB Exon1 28.038448 97.123837 28.038448 70.085389 49.0619185 1.690744527 0.095915 2 54 SH5523 5523 snR33 5' 34.455171 110.06302 72.2590955 1.858892521 -0.321517 2 55 SH14167 14167 MT COB intronic 33.995699 128.626157 33.995699 95.630458 64.8130785 1.81166265 -0.045194 2 56 SH17335 17335 YIL018W_9_316766_317930_INTRON_5_404 intron 27.167314 99.055519 27.167314 72.888205 50.0277595 1.699211053 -0.002495 2 57 SH2428 2428 Phe5 5' flank 27.700173 75.715012 51.7075925 1.713554318 -0.002033 2 58 SH13198 13198 MT COX1 Exon4 27.741045 104.183406 27.741045 77.442361 52.591703 1.720917234 -0.02184 2 59 SH13106 13106 MT COX1 COX1ai3 27.476591 93.463863 27.476591 66.987272 47.2319315 1.674235706 0.100316 2 60 SH4046 4046 SRP RNA SRP RNA 121 140 27.441467 78.644928 53.0431975 1.724629696 -0.057726 2 61 SH8251 8251 snoRNA cluster4 5' 27.540435 99.081227 27.540435 72.540792 50.0406135 1.699322626 0.028359 2 62 SH20442 20442 YGL087C spliced 29.736764 95.589584 62.663174 1.797012389 -0.17714 2 63 SH7991 7991 snoRNA cluster 2 intergenic 26.722075 97.117802 26.722075 71.395727 49.058901 1.690717815 -0.014466 2 64 SH12123 12123 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7501 7520 26.261895 76.334111 51.298003 1.710100459 -0.112098 2 65 SH14399 14399 MT 21S rRNA 21S rRNA3 26.10225 101.721197 26.10225 76.618947 51.3605985 1.710630076 -0.127414 2 66 SH19159 19159 YPL075W_16_412249_415357_INTRON_9_759 intron 33.312045 108.056571 33.312045 75.744526 54.5282855 1.736621843 0.334794 2 67 SH9482 9482 RUF2 RUF2 251 265 66.117268 127.683283 96.9002755 1.986325012 -0.021717 2 68 SH12084 12084 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7306 7324 38.669851 98.065223 68.367537 1.834849934 0.0115 2 69 SH337 337 Arg5 tRNA 21 35 26.11318 76.587317 51.3502485 1.71054255 -0.126212 2 70 SH6760 6760 snR50 5' 44.818481 102.169617 73.494049 1.866252175 0.051337 2 71 SH19973 19973 YBL087C spliced 25.30566 71.923981 48.6148205 1.686768687 -0.126423 2 72 SH15102 15102 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 26.442309 96.028647 26.442309 70.586338 48.5143235 1.68586998 -0.023794 2 73 SH17209 17209 YHR039C-A_8_187670_187164_INTRON_4_165 intron 29.489854 104.906367 29.489854 76.416513 52.9531835 1.723892075 0.106697 2 74 SH6383 6383 snR43 snR43 156 175 27.086979 75.868751 51.477865 1.711620527 -0.046657 2 75 SH7696 7696 snoRNA cluster1 intergenic 36.886371 143.605226 36.886371 107.718855 72.302613 1.859153993 -0.221013 2 76 SH8048 8048 snoRNA cluster 2 intergenic 26.869911 101.195442 26.869911 75.325531 51.097721 1.708401531 -0.055257 2 77 SH29 29 Ala1 tRNA 41 53 727.978463 833.942235 780.960349 2.892628984 -0.199192 2 78 SH1056 1056 Gly3 tRNA 16 33 33.089026 86.823811 59.9564185 1.777835682 0.114619 2 79 SH18475 18475 YMR143W_13_551927_552902_INTRON_25_568 intron 28.528976 115.173035 28.528976 87.644059 58.0865175 1.76407534 -0.098389 2 80 SH20519 20519 YGR034W spliced 28.289686 79.939455 54.1145705 1.733314216 -0.016714 2 81 SH15188 15188 MT COX3 cox3 27.12804 103.222656 27.12804 77.094616 52.111328 1.716932141 -0.059436 2 82 SH12572 12572 MT_15S MT_15S 25.763387 98.852569 25.763387 74.089182 49.9262845 1.698329247 -0.120361 2 83 SH18987 18987 YOR096W_15_505793_506766_INTRON_145_545 intron 27.120647 93.875735 27.120647 67.755088 47.4378675 1.676125158 0.064269 2 84 SH18375 18375 YMR116C_13_500687_499455_INTRON_538_810 5' exon 26.438995 99.701257 26.438995 74.262262 50.3506285 1.702004896 -0.07275 2 85 SH15482 15482 YBL092W_2_45639_46364_INTRON_1_333 5' exon 173.218073 384.455678 173.218073 212.237605 192.727839 2.284944452 0.190604 2 86 SH2958 2958 Ser1 tRNA 21 38 41.733602 114.23796 77.985781 1.892015426 -0.236244 2 87 SH11 11 Ala1 5' flank 26.537228 78.078991 52.3081095 1.718569024 -0.1137 2 88 SH12806 12806 MT COX1 COX1ai1 27.067936 102.331398 27.067936 76.263462 51.665699 1.713202309 -0.05299 2 89 SH16105 16105 YDR064W_4_579453_580447_INTRON_22_560 5' exon 41.260177 160.665861 41.260177 120.405684 80.8329305 1.907588324 -0.352677 2 90 SH10993 10993 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1851 1871 10319.79922 5967.143699 8143.471459 3.910809579 0.163257 2 91 SH16027 16027 YDL191W_4_117665_118518_INTRON_4_494 5' exon 30.015032 110.38286 30.015032 81.367828 55.69143 1.745788369 0.0771 2 92 SH9621 9621 RUF3 3' 25.916562 70.531011 48.2237865 1.683261308 -0.061718 2 93 SH1929 1929 Lys1 3' flank 28.165901 80.444996 54.3054485 1.734843405 -0.031288 2 94 SH11340 11340 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3586 3603 8892.149506 4210.799318 6551.474412 3.816339049 0.521162 2 95 SH6282 6282 snR42 snR42 191 209 31.955015 105.874175 68.914595 1.838311208 -0.304746 2 96 SH239 239 Arg3 51-63 51 63 1126.357776 968.432579 1047.395178 3.02011057 0.13776 2 97 SH4589 4589 U3b (snR17b) 3' 26.681599 71.08946 48.8855295 1.689180324 -0.01326 2 98 SH11949 11949 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6631 6644 25.655742 61.982339 43.8190405 1.641662864 0.04789 2 99 SH11609 11609 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4931 4947 43.003114 60.988311 51.9957125 1.715967534 1.011768 2 100 SH15539 15539 YBR078W_2_393082_394818_INTRON_59_388 intron 42.495433 146.978804 42.495433 105.483371 73.989402 1.869169517 -0.059022 2 101 SH5604 5604 snR34 5' 27.268769 72.473585 49.871177 1.697849618 0.010157 2 102 SH3775 3775 Val4 3' flank 31.024987 89.601047 60.313017 1.780411053 -0.020295 2 103 SH11029 11029 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2031 2046 10082.1388 6724.08843 8403.113617 3.924440236 -0.056098 2 104 SH11555 11555 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4661 4674 54.488327 102.957266 78.7227965 1.896100513 0.20733 3 2 SH11895 11895 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6361 6379 66.348222 94.579 80.463611 1.905599519 0.555147 3 3 SH20327 20327 YER074W spliced 31.592506 90.960579 61.2765425 1.787294252 -0.01933 3 4 SH21612 21612 copy of SH7093 27.360272 87.200804 57.280538 1.758007088 -0.166705 3 5 SH11535 11535 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4561 4579 1018.656381 754.801977 886.729179 2.947791 0.397678 3 6 SH7690 7690 snoRNA cluster1 intergenic 28.651634 95.668078 28.651634 68.016444 48.334039 1.684253088 0.166331 3 7 SH10526 10526 RUF8 RUF8 556 570 27.809888 70.770421 49.2901545 1.692760179 0.070818 3 8 SH17961 17961 YLR185W_12_522665_523290_INTRON_8_366 intron 37.803524 138.475194 37.803524 101.67167 69.737597 1.843466978 -0.081636 3 9 SH1752 1752 Leu7 tRNA 56 68 27.287155 83.67016 55.4786575 1.744125943 -0.130365 3 10 SH2534 2534 Pro2 5' flank 27.112238 80.750657 53.9314475 1.731842077 -0.106923 3 11 SH9351 9351 RUF1 RUF1 331 348 26.67588 74.14533 50.410605 1.70252191 -0.05406 3 12 SH8558 8558 snR19 / U1 RNA U1 286 305 25.799202 64.97307 45.386136 1.65692321 0.010425 3 13 SH11789 11789 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5831 5846 26019.94958 16117.04652 21068.49805 4.323633576 -0.201248 3 14 SH21621 21621 copy of SH7516 31.452868 83.347284 57.400076 1.758912467 0.109963 3 15 SH7103 7103 snR63 snR63 21 38 40.429101 91.445207 65.937154 1.819130198 0.192267 3 16 SH19216 19216 YPL081W_16_404945_406039_INTRON_8_508 intron 28.266315 106.013336 28.266315 78.747021 53.506668 1.728407907 -0.003224 3 17 SH5206 5206 snR13 3' 26.822723 76.352945 51.587834 1.712547294 -0.071641 3 18 SH6469 6469 snR45 3' 31.458914 83.239005 57.3489595 1.758525543 0.112231 3 19 SH10358 10358 RUF7 RUF7 401 420 38.29763 96.330308 67.313969 1.828105198 0.04036 3 20 SH21573 21573 copy of SH5388 27.528669 75.226248 51.3774585 1.710772617 -0.007346 3 21 SH21197 21197 YOL121C spliced 28.104268 71.188727 49.6464975 1.695888615 0.085442 3 22 SH19638 19638 RNA14 2.2 30.841039 82.723358 56.7821985 1.754212204 0.095295 3 23 SH12033 12033 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7051 7074 33.132329 91.804367 62.468348 1.795660021 0.015733 3 24 SH2339 2339 Phe3 tRNA 21 33 37.622217 104.118716 70.8704665 1.850465291 -0.134647 3 25 SH7977 7977 snoRNA cluster 2 snR57 28.423929 104.708589 28.423929 77.28466 52.8542945 1.72308028 0.026021 3 26 SH16400 16400 YER056C-A_5_270183_269421_INTRON_38_434 intron 30.712342 117.541464 30.712342 87.829122 59.270732 1.772840291 -0.002952 3 27 SH6343 6343 snR43 5' 30.148552 80.035931 55.0922415 1.741090443 0.101987 3 28 SH10474 10474 RUF8 RUF8 296 315 27.3245 78.676467 53.0004835 1.724279831 -0.066175 3 29 SH1961 1961 Lys2 tRNA 6 18 42.827374 114.881783 78.8545785 1.896826915 -0.22547 3 30 SH12707 12707 MT ORF 8 (hypothetical) ORF8 27.589246 107.722445 27.589246 81.133199 54.3612225 1.735289215 -0.078793 3 31 SH10555 10555 RUF8 RUF8 701 718 29.533597 76.044048 52.7888225 1.722541975 0.114382 3 32 SH4763 4763 snR5 5' - 3 3 30.632086 96.071068 63.351577 1.80175743 -0.14521 3 33 SH12401 12401 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.970846 115.139749 35.970846 80.168903 58.0698745 1.763950887 0.34975 3 34 SH6709 6709 snR49 snR49 71 88 25.287976 68.48262 46.885298 1.671036681 -0.080446 3 35 SH13203 13203 MT COX1 Exon4 27.193072 96.133291 27.193072 69.940219 48.5666455 1.686338108 0.038947 3 36 SH20610 20610 YHR079C-A spliced 35.528191 109.696345 72.612268 1.861010002 -0.289402 3 37 SH6306 6306 snR42 snR42 311 325 38.66538 97.482305 68.0738425 1.832980266 0.023702 3 38 SH5560 5560 snR33 snR33 86 100 78.584911 130.572905 104.578908 2.019444103 0.116975 3 39 SH10113 10113 RUF6 RUF6 411 432 33.00703 109.923988 71.465509 1.854096491 -0.354238 3 40 SH21218 21218 YOR122C spliced 33.647609 91.820858 62.7342335 1.797504596 0.028559 3 41 SH1794 1794 Leu8 5' flank - tRNA11 11 426.541185 647.70549 537.1233375 2.730074022 -0.489978 3 42 SH1430 1430 Leu2 5' flank 26.081695 79.541821 52.811758 1.722730625 -0.164857 3 43 SH19239 19239 YPL090C_16_378390_377286_INTRON_7_400 intron 27.968559 99.856444 27.968559 72.887885 50.428222 1.702673656 0.053485 3 44 SH3170 3170 Ser5 5' flank 28.07038 69.125249 48.5978145 1.686616739 0.111344 3 45 SH18122 18122 YLR388W_12_898158_898821_INTRON_1_488 intron 28.337891 107.406014 28.337891 80.068123 54.203007 1.73402338 -0.015116 3 46 SH19219 19219 YPL081W_16_404945_406039_INTRON_8_508 intron/exon 37.781485 135.157779 37.781485 98.376294 68.0788895 1.833012463 -0.014154 3 47 SH5398 5398 snR31 snR31 56 70 33.319688 80.679916 56.999802 1.755873347 0.237451 3 48 SH9670 9670 RUF4 RUF4 126 147 28.967437 75.959359 52.463398 1.719856416 0.079027 3 49 SH21403 21403 Pro8 spliced 122.31003 161.778137 142.0440835 2.152423149 0.233761 3 50 SH6673 6673 snR48 3' 30.025152 88.891303 59.4582275 1.774211958 -0.051835 3 51 SH17401 17401 YIL069C_9_232366_231550_INTRON_4_412 intron 28.167421 100.841985 28.167421 73.674564 50.9209925 1.70689686 0.056828 3 52 SH14137 14137 MT COB intronic 28.420799 97.613352 28.420799 70.192553 49.306676 1.692905726 0.120533 3 53 SH12787 12787 MT COX1 COX1ai1 29.269373 111.312147 29.269373 83.042774 56.1560735 1.749396734 0.009299 3 54 SH19860 19860 Negative Control 29.609742 81.150928 55.380335 1.743355578 0.054157 3 55 SH11408 11408 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3926 3941 31.315804 81.207976 56.26189 1.750214317 0.144343 3 56 SH711 711 Gln3 3' flank 29.005174 66.122899 47.5640365 1.677278704 0.217042 3 57 SH19266 19266 YPL143W_16_282121_282969_INTRON_20_544 intron 30.338324 127.871891 30.338324 98.533567 64.4359455 1.809128206 -0.20321 3 58 SH14944 14944 MT tRNA Met 5' 24.459304 95.265905 24.459304 71.806601 48.1329525 1.682442502 -0.190367 3 59 SH1453 1453 Leu2 tRNA-exon/intron 36 53 31.066941 92.784762 61.9258515 1.791871987 -0.072499 3 60 SH3838 3838 RNaseP RNaseP 156 173 35.924536 105.523542 70.724039 1.849567055 -0.200281 3 61 SH20819 20819 YKL190W spliced 27.00436 78.018584 52.511472 1.720254193 -0.079974 3 62 SH4719 4719 snR4 snR4 131 145 31.577748 90.190393 60.8840705 1.78450368 -0.0068 3 63 SH18978 18978 YOR096W_15_505793_506766_INTRON_145_545 intron 28.735044 112.075579 28.735044 84.340535 56.5377895 1.752338825 -0.040941 3 64 SH13506 13506 MT COX1 intronic 51.956115 155.168194 51.956115 104.212079 78.084097 1.892562592 0.140695 3 65 SH6344 6344 snR43 5' 28.492881 74.986287 51.739584 1.713822933 0.060813 3 66 SH11903 11903 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6401 6414 64.175376 113.014831 88.5951035 1.94740972 0.179638 3 67 SH21429 21429 Tyr1_2 spliced 28.699803 72.568742 50.6342725 1.704444575 0.107258 3 68 SH16217 16217 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 28.072538 109.471673 28.072538 82.399135 55.2358365 1.742220935 -0.061574 3 69 SH12757 12757 MT COX1 COX1ai1 63.353763 172.884391 63.353763 110.530628 86.9421955 1.939230603 0.209507 3 70 SH19768 19768 Negative Control 40.877177 91.812353 66.344765 1.82180666 0.193071 3 71 SH6727 6727 snR49 161-165 + 3' 161 25.785002 72.926642 49.355822 1.693338389 -0.10357 3 72 SH20983 20983 YML056C spliced 37.929363 98.292225 68.110794 1.833215943 -0.009177 3 73 SH18076 18076 YLR344W_12_819312_820142_INTRON_20_466 intron 25.656998 101.659709 25.656998 77.002711 51.3298545 1.710370033 -0.165343 3 74 SH10812 10812 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 946 966 122.13595 150.62434 136.380145 2.134751148 0.354549 3 75 SH1107 1107 Gly4 tRNA 11 27 29.341472 71.174993 50.2582325 1.701207211 0.168336 3 76 SH4988 4988 snR10 5' 29.225084 77.838105 53.5315945 1.72861018 0.07125 3 77 SH13392 13392 MT COX1 intronic 29.551015 110.003339 29.551015 81.452324 55.5016695 1.744306047 0.046705 3 78 SH6890 6890 snR56 81-88 + 3' 81 30.349037 82.803074 56.5760555 1.752632665 0.072281 3 79 SH17041 17041 YGR183C_7_859471_859058_INTRON_4_216 intron 28.529243 102.716827 28.529243 75.187584 51.8584135 1.714819226 0.060532 3 80 SH21834 21834 copy of SH16599 28.304633 80.06387 54.1842515 1.733873078 -0.017275 3 81 SH6366 6366 snR43 snR43 71 87 34.202908 106.878746 70.540827 1.848440547 -0.267008 3 82 SH2613 2613 Pro3 tRNA 16 32 46.285764 85.484982 65.885373 1.818789009 0.442594 3 83 SH13871 13871 MT COB intronic 38.013018 147.98742 38.013018 110.974402 74.49371 1.872119604 -0.257489 3 84 SH6539 6539 snR46 186-197 + 3' 186 26.458147 68.903678 47.6809125 1.678344558 0.000511 3 85 SH5837 5837 snR35 snR35 371 385 34.691069 103.708495 69.199782 1.840104726 -0.19324 3 86 SH725 725 Gln3 3' flank 30.574218 86.418957 58.4965875 1.767130531 0.016055 3 87 SH14578 14578 MT 21S rRNA intronic 27.242218 100.717222 27.242218 74.475004 50.858611 1.706364495 -0.017859 3 88 SH1342 1342 Ile3 tRNA-intron/exon 91 105 56.489864 127.871238 92.180551 1.9646393 -0.180746 3 89 SH21932 21932 copy of SH21372 28.033698 74.183636 51.108667 1.708494554 0.040976 3 90 SH20282 20282 YDR450W spliced 30.1873 78.883638 54.535469 1.736679052 0.118926 3 91 SH15569 15569 YBR084C-A_2_415219_414144_INTRON_3_508 intron 37.252018 164.744621 37.252018 128.492603 82.8723105 1.918409447 -0.572113 3 92 SH13309 13309 MT COX1 COX1-ai5a 30.521819 113.894517 30.521819 84.372698 57.4472585 1.759269308 0.050829 3 93 SH2936 2936 Ser1 5' flank 27.953607 79.186987 53.570297 1.728924054 -0.029763 3 94 SH14919 14919 MT tRNA Tyr tRNA / 3' 31.769458 109.666988 31.769458 78.89753 55.333494 1.742988094 0.208244 3 95 SH20302 20302 YER003C spliced 29.334832 78.985547 54.1601895 1.733680175 0.06366 3 96 SH3256 3256 Thr1 3' flank 29.574975 90.73914 60.1570575 1.779286585 -0.103883 3 97 SH8484 8484 snR19 / U1 RNA 5' 26.779995 61.96797 44.3739825 1.647128408 0.12829 3 98 SH8929 8929 snR17a / U3a 5' 22.261747 61.057632 41.6596895 1.619716029 -0.196933 3 99 SH11779 11779 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5781 5799 21.399462 51.017103 36.2082825 1.558807925 -0.070721 3 100 SH19848 19848 Negative Control 27.933502 73.497359 50.7154305 1.705140116 0.043079 3 101 SH1911 1911 Lys1 tRNA 11 23 25.268616 68.864249 47.0664325 1.672711281 -0.087525 3 102 SH8875 8875 LSR1 / U2 RNA U2 1016 1032 70.106331 147.033992 108.5701615 2.035710484 -0.220724 3 103 SH5859 5859 snR35 snR35 481 497 18.684006 57.166404 37.925205 1.578927937 -0.438118 3 104 SH5371 5371 snR31 5' 21.760686 59.547914 40.6543 1.609106488 -0.210595 4 2 SH15802 15802 YDL061C_4_341182_340627_INTRON_1_408 intron 29.124969 101.846538 29.124969 73.721569 51.423269 1.711159681 0.119186 4 3 SH19137 19137 YPL075W_16_412249_415357_INTRON_9_759 intron 31.831709 123.693324 31.831709 92.861615 62.346662 1.794813207 -0.041748 4 4 SH19173 19173 YPL079W_16_406631_407534_INTRON_12_432 intron 28.8455 111.149431 28.8455 83.303931 56.0747155 1.748767079 -0.02133 4 5 SH15762 15762 YCR031C_3_178212_177492_INTRON_8_314 intron 27.654214 106.224072 27.654214 79.569858 53.612036 1.729262301 -0.054881 4 6 SH6268 6268 snR42 snR42 121 143 29.217806 79.525917 54.3718615 1.735374202 0.049302 4 7 SH17096 17096 YHL001W_8_104270_105084_INTRON_130_527 intron 28.36932 131.60079 28.36932 104.23147 66.300395 1.821516116 -0.374723 4 8 SH3391 3391 Thr4 tRNA 41 57 31.577373 91.39014 61.4837565 1.788760394 -0.027259 4 9 SH11386 11386 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3816 3834 14429.53105 8737.425423 11583.47824 4.063838987 -0.003105 4 10 SH4769 4769 snR5 snR5 16 31 34.063927 102.505043 68.284485 1.834322038 -0.184451 4 11 SH1855 1855 Leu9 tRNA 16 31 47.795485 175.922752 111.8591185 2.048671393 -0.95044 4 12 SH1385 1385 Leu1 5' flank - tRNA12 12 79.730328 227.619353 153.6748405 2.186602771 -0.852715 4 13 SH15796 15796 YDL061C_4_341182_340627_INTRON_1_408 intron 51.504486 264.948553 51.504486 214.444067 132.9742765 2.123767636 -1.235686 4 14 SH21099 21099 YNL044W spliced 32.646186 188.056407 110.3512965 2.04277744 -1.448764 4 15 SH18000 18000 YLR287C-A_12_713158_712537_INTRON_4_433 intron 26.215347 102.110794 26.215347 76.895447 51.555397 1.712274135 -0.122545 4 16 SH3133 3133 Ser4 tRNA 71 83 27.525692 87.010142 57.267917 1.757911387 -0.153156 4 17 SH14920 14920 MT tRNA Tyr 3' 25.949719 100.944169 25.949719 75.99445 50.9720845 1.707332394 -0.130848 4 18 SH13382 13382 MT COX1 Exon 5b 26.000266 91.247033 26.000266 66.246767 46.1235165 1.663922411 0.005207 4 19 SH6496 6496 snR46 5' 28.173806 84.763182 56.468494 1.751806205 -0.08311 4 20 SH13885 13885 MT COB intronic 32.954261 140.629968 32.954261 108.675707 70.814984 1.850125161 -0.331997 4 21 SH10125 10125 RUF6 RUF6 471 487 31.208111 85.286997 58.247554 1.765277693 0.063917 4 22 SH13460 13460 MT COX1 intronic 26.857747 102.468884 26.857747 76.611137 51.734442 1.713779769 -0.072368 4 23 SH14509 14509 MT 21S rRNA 21S rRNA3 26.636788 99.600466 26.636788 73.963678 50.300233 1.701569997 -0.05453 4 24 SH17505 17505 YJL136C_10_156971_156248_INTRON_25_484 intron 33.261778 119.75902 33.261778 87.497242 60.37951 1.780889584 0.109636 4 25 SH4372 4372 telomerase RNA telomerase 896 910 82.695165 139.792385 111.243775 2.046275718 0.047784 4 26 SH5706 5706 snR34 snR34 451 473 28.817264 83.721776 56.26952 1.75027321 -0.028185 4 27 SH9361 9361 RUF1 RUF1 381 397 28.248477 82.363666 55.3060715 1.742772811 -0.049371 4 28 SH10939 10939 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1581 1596 36.442566 81.186475 58.8145205 1.769484561 0.346718 4 29 SH7615 7615 snR189 snR189 146 166 27.57934 71.289627 49.4344835 1.694030001 0.047772 4 30 SH8646 8646 snR19 / U1 RNA 3' 25.810227 68.516112 47.1631695 1.673602983 -0.041823 4 31 SH21096 21096 YNL044W spliced 28.12159 74.745737 51.4336635 1.711247459 0.039316 4 32 SH9907 9907 RUF5-1 RUF5-1 341 361 25.440225 66.451041 45.945633 1.662244239 -0.038623 4 33 SH19346 19346 YPL249C-A_16_76239_75699_INTRON_17_254 intron 31.447477 118.335816 31.447477 87.888339 59.667908 1.775740811 0.027665 4 34 SH14016 14016 MT COB Exon4 26.894749 97.569072 26.894749 71.674323 49.284536 1.692710672 -0.005799 4 35 SH19008 19008 YOR182C_15_678792_678190_INTRON_4_414 exon/intron 26.613905 102.195202 26.613905 76.581297 51.597601 1.71262951 -0.089558 4 36 SH14925 14925 MT tRNA Asn 5' 28.453446 99.230212 28.453446 71.776766 50.115106 1.699968653 0.101327 4 37 SH20411 20411 YFR032C-A spliced 35.296075 88.360977 61.828526 1.791188893 0.147436 4 38 SH8830 8830 LSR1 / U2 RNA U2 791 808 27.736475 80.947856 54.3421655 1.735136941 -0.066475 4 39 SH13961 13961 MT COB Cytbi3 28.624667 104.271105 28.624667 76.646438 52.6355525 1.721279186 0.047583 4 40 SH18012 18012 YLR287C-A_12_713158_712537_INTRON_4_433 intron 28.800869 104.294923 28.800869 76.494054 52.6474615 1.721377436 0.061139 4 41 SH4992 4992 snR10 5' - 10 -9 10 28.403843 76.086459 52.245151 1.718045989 0.040333 4 42 SH10091 10091 RUF6 RUF6 301 322 27.850113 85.5363 56.6932065 1.753531021 -0.113974 4 43 SH2 2 Ala1 5' flank 36.395757 95.15029 65.7730235 1.818047806 0.023335 4 44 SH15488 15488 YBL092W_2_45639_46364_INTRON_1_333 intron 32.281559 141.341936 32.281559 110.060377 71.170968 1.852302873 -0.375081 4 45 SH1016 1016 Gly2 71-72 + 3' flank 71 88 28.421779 92.989249 60.705514 1.783228141 -0.195009 4 46 SH9415 9415 RUF2 5' 26.548944 78.229179 52.3890615 1.719240619 -0.11472 4 47 SH5243 5243 snR30 snR30 66 83 26.658904 75.184695 50.9217995 1.706903743 -0.068644 4 48 SH12113 12113 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7451 7469 2974.234624 2894.122557 2934.178591 3.467486544 -0.310713 4 49 SH19480 19480 ADH1 33.570484 99.291931 66.4312075 1.822372147 -0.132251 4 50 SH10237 10237 RUF6 RUF6 1031 1045 29.165765 83.711217 56.438491 1.751575393 -0.005409 4 51 SH19570 19570 AEP2/ATP13 0.6 29.795857 96.978417 63.387137 1.802001136 -0.196797 4 52 SH9805 9805 RUF4 3' 32.746223 101.49005 67.1181365 1.82683989 -0.197963 4 53 SH15036 15036 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.501532 104.281784 25.501532 79.780252 52.640892 1.72132324 -0.21105 4 54 SH5305 5305 snR30 snR30 376 393 29.387467 77.197266 53.2923665 1.726665006 0.089967 4 55 SH15887 15887 YDL082W_4_308423_309387_INTRON_5_369 intron 28.467194 101.538488 28.467194 74.071294 51.269244 1.709856914 0.071406 4 56 SH2012 2012 Lys3 tRNA 6 22 30.295523 76.120308 53.2079155 1.725976245 0.161371 4 57 SH16966 16966 YGR034W_7_555923_556666_INTRON_20_496 intron 30.306456 123.900348 30.306456 94.593892 62.450174 1.795533653 -0.135543 4 58 SH17698 17698 YKL006W_11_431544_432358_INTRON_130_527 3' exon 32.465256 120.497838 32.465256 89.032582 60.748919 1.783538554 0.050285 4 59 SH4536 4536 U3b (snR17b) U3b 236 251 46.001624 104.677541 75.3395825 1.877023209 0.024482 4 60 SH6239 6239 snR42 5' 26.166015 70.227963 48.196989 1.683019908 -0.039138 4 61 SH18589 18589 YNL050C_14_534978_534075_INTRON_18_108 intron/exon 26.645709 96.903262 26.645709 71.257553 48.951631 1.689767166 -0.018119 4 62 SH11336 11336 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3566 3579 31.382298 92.089512 61.735905 1.790537819 -0.047346 4 63 SH14520 14520 MT 21S rRNA 21S rRNA3 31.137901 110.571414 31.137901 80.433513 55.785707 1.746522941 0.151542 4 64 SH2410 2410 Phe4 3' flank 28.583547 80.947344 54.7654455 1.738506625 -0.009787 4 65 SH12635 12635 MT_15S MT_15S 26.445498 96.23216 26.445498 70.786662 48.61608 1.686779938 -0.026281 4 66 SH11415 11415 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3961 3980 59.598982 97.282286 78.440634 1.894541095 0.400356 4 67 SH5881 5881 snR35 3' 26.904369 74.147604 50.5259865 1.703514802 -0.037664 4 68 SH15219 15219 MT COX3 cox3 28.831625 101.710758 28.831625 73.879133 51.355379 1.710585939 0.097974 4 69 SH16798 16798 YGL137W_7_249872_252741_INTRON_19_218 exon/intron 26.149421 101.032902 26.149421 75.883481 51.016451 1.707710243 -0.114682 4 70 SH1847 1847 Leu9 5' flank 27.21739 69.677541 48.4474655 1.685271062 0.044279 4 71 SH13012 13012 MT COX1 COX1ai2 28.507474 118.99123 28.507474 91.483756 59.995615 1.77811951 -0.165729 4 72 SH13936 13936 MT COB Cytbi3 28.646858 118.68516 28.646858 91.038302 59.84258 1.777010309 -0.15165 4 73 SH21714 21714 copy of SH11499 38.233964 98.436815 68.3353895 1.834645674 -0.005628 4 74 SH18946 18946 YOL127W_15_80347_81189_INTRON_14_427 intron 29.391669 108.560893 29.391669 80.169224 54.7804465 1.738625568 0.052415 4 75 SH14638 14638 MT 21S rRNA Sce1 endonuc 27.067506 102.19848 27.067506 76.130974 51.59924 1.712643305 -0.051353 4 76 SH13869 13869 MT COB intronic 38.311588 138.948542 38.311588 101.636954 69.974271 1.844938383 -0.069947 4 77 SH16044 16044 YDL191W_4_117665_118518_INTRON_4_494 intron 31.387077 124.189492 31.387077 93.802415 62.594746 1.796537881 -0.075653 4 78 SH7109 7109 snR63 snR63 51 70 27.499979 76.125376 51.8126775 1.714436036 -0.021111 4 79 SH17456 17456 YIL148W_9_68708_69528_INTRON_9_442 intron 28.241724 108.584576 28.241724 81.342852 54.792288 1.738719436 -0.037335 4 80 SH2939 2939 Ser1 5' flank 28.310152 86.468873 57.3895125 1.758832536 -0.093961 4 81 SH13043 13043 MT COX1 COX1ai2 27.522871 101.316883 27.522871 74.794012 51.1584415 1.708917306 -0.002222 4 82 SH14729 14729 MT tRNA cys; tRNA his intergenic / tRNA his 24.119242 89.768802 24.119242 66.64956 45.384401 1.656906608 -0.141322 4 83 SH11438 11438 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4076 4091 38.703427 106.307645 72.505536 1.860371167 -0.154249 4 84 SH17472 17472 YJL001W_10_434855_435618_INTRON_66_181 5' exon 62.352953 197.413717 62.352953 136.060764 99.2068585 1.996541697 -0.20002 4 85 SH6222 6222 snR40 3' 26.525548 78.754328 52.639938 1.721315369 -0.123079 4 86 SH3824 3824 RNaseP RNaseP 86 100 54.196805 115.993204 85.0950045 1.929904066 -0.032041 4 87 SH16180 16180 YDR305C_4_1073479_1072737_INTRON_88_176 3' exon 30.104324 114.853519 30.104324 85.749195 57.9267595 1.762879234 0.007361 4 88 SH17564 17564 YJL189W_10_75932_76473_INTRON_7_392 intron 28.901824 100.628942 28.901824 72.727118 50.814471 1.705987409 0.118292 4 89 SH14688 14688 MT 21S rRNA 21S rRNA4 / 3' 29.166955 108.31067 29.166955 80.143715 54.655335 1.737632561 0.038272 4 90 SH19753 19753 Negative Control 32.448772 100.353594 66.401183 1.822175817 -0.182896 4 91 SH9298 9298 RUF1 RUF1 66 83 28.766932 74.81331 51.790121 1.714246926 0.081161 4 92 SH11162 11162 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2696 2719 28.521673 93.525885 61.023779 1.785499099 -0.199215 4 93 SH19872 19872 Negative Control 32.429734 115.435358 73.932546 1.868835662 -0.469662 4 94 SH18696 18696 YNL130C_14_381156_379555_INTRON_30_470 5' exon 36.015926 134.307194 36.015926 99.291268 67.653597 1.830290892 -0.072625 4 95 SH21084 21084 YMR292W spliced 31.208104 90.033347 60.6207255 1.78262113 -0.019864 4 96 SH18529 18529 YMR225C_13_721402_720959_INTRON_59_205 3' exon 26.837756 116.434303 26.837756 90.596547 58.7171515 1.768764979 -0.241285 4 97 SH5069 5069 snR11 5' 28.019135 64.592032 46.3055835 1.665633361 0.172912 4 98 SH19237 19237 YPL090C_16_378390_377286_INTRON_7_400 intron 23.30765 81.800675 23.30765 59.493025 41.4003375 1.617003882 -0.086175 4 99 SH13537 13537 MT COX1 intronic 26.513987 97.287971 26.513987 71.773984 49.1439855 1.691470374 -0.034592 4 100 SH11395 11395 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3861 3877 11042.10617 9259.835756 10150.97096 4.006507586 -0.443803 4 101 SH6596 6596 snR47 86-99 + 3' 86 34.931988 86.552387 60.7421875 1.783490428 0.180569 4 102 SH20212 20212 YDR064W spliced 38.174552 97.849816 68.012184 1.832586721 0.005429 4 103 SH12925 12925 MT COX1 COX1ai2 88.660942 277.349145 88.660942 189.688203 139.1745725 2.143559896 -0.415339 4 104 SH3502 3502 Tyr1 tRNA-intron/exon 51 67 55.184847 114.005167 84.595007 1.927344731 0.01858 5 2 SH14157 14157 MT COB intronic 28.770535 113.604657 28.770535 85.834122 57.3023285 1.75817227 -0.05619 5 3 SH10498 10498 RUF8 RUF8 416 435 27.274225 73.115519 50.194872 1.700659351 0.00208 5 4 SH6237 6237 snR42 5' 27.679257 73.002023 50.34064 1.701918733 0.03196 5 5 SH19511 19511 ACT1 27.639205 80.447217 54.043211 1.732741145 -0.066883 5 6 SH21270 21270 YPL090C spliced 35.945593 96.017282 65.9814375 1.819421773 -0.005722 5 7 SH14893 14893 MT tRNA Ile 5' 26.67337 89.60888 26.67337 63.93551 45.30444 1.656140767 0.089068 5 8 SH369 369 Asn1 5' flank 29.796867 80.803904 55.3003855 1.742728159 0.070318 5 9 SH14392 14392 MT 21S rRNA 5' / 21S rRNA3 30.654553 111.21485 30.654553 81.560297 56.107425 1.749020338 0.109082 5 10 SH17302 17302 YHR203C_8_505526_504472_INTRON_15_283 5' exon 35.970427 123.55711 35.970427 88.586683 62.278555 1.794338527 0.158432 5 11 SH7250 7250 snR65 snR65 26 45 24.19464 71.194124 47.694382 1.678467226 -0.20252 5 12 SH11621 11621 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4991 5006 28.241386 76.201366 52.221376 1.717848311 0.028015 5 13 SH16550 16550 YER133W_5_432491_433954_INTRON_178_702 intron 25.819272 101.799559 25.819272 76.980287 51.3997795 1.710961256 -0.152921 5 14 SH1718 1718 Leu6 3' flank 27.959288 89.424475 58.6918815 1.768578032 -0.156497 5 15 SH4929 4929 snR9 snR9 51 67 27.200014 82.598821 54.8994175 1.739567736 -0.123489 5 16 SH6401 6401 snR43 3' 28.152021 87.253291 57.702656 1.761195804 -0.113557 5 17 SH10229 10229 RUF6 RUF6 991 1010 28.521153 84.059565 56.290359 1.750434018 -0.051677 5 18 SH6716 6716 snR49 snR49 106 125 27.466807 84.189919 55.828363 1.746854894 -0.124201 5 19 SH7867 7867 snoRNA cluster1 snR73 33.366452 101.889612 33.366452 69.52316 51.444806 1.711341534 0.434056 5 20 SH4000 4000 RNase MRP 3' 29.231203 87.502807 58.367005 1.766167409 -0.063349 5 21 SH14927 14927 MT tRNA Asn 5' 27.209458 109.171336 27.209458 82.961878 55.085668 1.74103862 -0.127226 5 22 SH18095 18095 YLR367W_12_855877_857316_INTRON_698_1180 intron 29.314536 111.586768 29.314536 83.272232 56.293384 1.750457356 0.009442 5 23 SH17396 17396 YIL069C_9_232366_231550_INTRON_4_412 intron 28.869708 104.510559 28.869708 76.640851 52.7552795 1.722265928 0.063717 5 24 SH12723 12723 MT COX1 5' 26.509413 101.111012 26.509413 75.601599 51.055506 1.708042585 -0.084779 5 25 SH17278 17278 YHR141C_8_382752_381991_INTRON_5_445 intron 29.147542 103.024664 29.147542 74.877122 52.012332 1.716106326 0.105073 5 26 SH13811 13811 MT COB Cytbi2 27.010351 93.601528 27.010351 67.591177 47.300764 1.674868156 0.058745 5 27 SH7740 7740 snoRNA cluster1 intergenic 28.846028 107.46609 28.846028 79.620062 54.233045 1.734263989 0.023989 5 28 SH17869 17869 YLL050C_12_40413_39803_INTRON_15_193 intron 34.957915 137.247387 34.957915 103.289472 69.1236935 1.839626936 -0.178585 5 29 SH13781 13781 MT COB intronic 30.247385 101.273183 30.247385 72.025798 51.1365915 1.708731777 0.213733 5 30 SH20644 20644 YHR203C spliced 884.418597 785.615974 835.0172855 2.921695466 0.149568 5 31 SH426 426 Asp1 5' flank 28.441334 89.144474 58.792904 1.769324912 -0.128767 5 32 SH11240 11240 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3086 3101 30293.35429 16817.11082 23555.23255 4.372087396 -0.069772 5 33 SH13932 13932 MT COB Cytbi3 27.992133 99.385936 27.992133 72.393803 50.192968 1.700642877 0.061634 5 34 SH2287 2287 Phe2 tRNA-exon/intron 31 48 29.985901 85.779621 57.882761 1.762549239 0.001537 5 35 SH17755 17755 YKL157W_11_154993_158183_INTRON_282_664 intron 29.623079 115.489429 29.623079 86.86635 58.2447145 1.765256521 -0.034232 5 36 SH21894 21894 copy of SH18999 29.311384 96.638513 62.9749485 1.799167821 -0.213307 5 37 SH10169 10169 RUF6 RUF6 691 703 29.608584 82.305954 55.957269 1.747856511 0.039933 5 38 SH17125 17125 YHR010W_8_126513_127484_INTRON_32_592 intron 26.018859 92.442837 26.018859 67.423978 46.7214185 1.66951602 -0.0109 5 39 SH472 472 Asp2 5' flank 31.15263 85.024424 58.088527 1.764090364 0.066306 5 40 SH17076 17076 YGR225W_7_945138_946919_INTRON_1184_1276 intron 26.499002 95.018102 26.499002 69.5191 48.009051 1.681323121 -0.00505 5 41 SH15433 15433 YBL072C_2_89435_88518_INTRON_1_308 intron 34.874787 123.244511 34.874787 89.369724 62.1222555 1.793247215 0.114122 5 42 SH10263 10263 RUF7 5' 38.52093 96.294455 67.4076925 1.828709461 0.045911 5 43 SH1328 1328 Ile3 tRNA 21 37 27.357312 83.130994 55.244153 1.742286319 -0.119054 5 44 SH18119 18119 YLR388W_12_898158_898821_INTRON_1_488 5' exon 34.366542 135.133528 34.366542 101.766986 68.066764 1.832935104 -0.162217 5 45 SH12890 12890 MT COX1 COX1ai1 30.698871 116.474342 30.698871 86.775471 58.737171 1.768913025 0.015132 5 46 SH265 265 Arg4 5' flank 26.629629 66.958221 46.793925 1.670189475 0.040436 5 47 SH2944 2944 Ser1 5' flank 27.785312 75.123421 51.4543665 1.711422236 0.011603 5 48 SH21622 21622 copy of SH7517 106.818466 170.895404 138.856935 2.142567575 -0.018835 5 49 SH9923 9923 RUF5-1 RUF5-1 421 442 25.930119 88.015678 56.9728985 1.755668315 -0.277173 5 50 SH2280 2280 Phe2 5' flank - tRNA12 12 32.708501 75.14802 53.9282605 1.731816412 0.318636 5 51 SH16752 16752 YGL076C_7_365994_364333_INTRON_565_1032 intron 28.972864 103.327252 28.972864 75.354388 52.163626 1.717367772 0.087386 5 52 SH15523 15523 YBR048W_2_332790_333771_INTRON_46_556 intron 32.255401 121.361152 32.255401 90.105751 61.180576 1.786613561 0.02307 5 53 SH11014 11014 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1956 1969 75.073203 133.59513 104.3341665 2.018426551 0.026662 5 54 SH18941 18941 YOL127W_15_80347_81189_INTRON_14_427 5' exon 31.34332 124.355907 31.34332 94.012587 62.6779535 1.797114808 -0.080982 5 55 SH20274 20274 YDR447C spliced 32.13985 82.229606 57.184728 1.75728006 0.159766 5 56 SH1425 1425 Leu1 3' flank 29.25579 93.593062 61.424426 1.788341107 -0.166312 5 57 SH15592 15592 YBR089C-A_2_426588_426148_INTRON_1_114 5' exon 29.472926 121.792872 29.472926 93.319946 61.396436 1.788143162 -0.151894 5 58 SH20600 20600 YHR041C spliced 27.74678 72.897258 50.322019 1.701758057 0.03803 5 59 SH601 601 Gln1 tRNA 46 60 32.518136 98.431663 65.4748995 1.81607484 -0.141803 5 60 SH13051 13051 MT COX1 COX1ai2 28.529144 109.922698 28.529144 82.393554 55.461349 1.743990429 -0.031107 5 61 SH11965 11965 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6711 6728 42.842025 86.960363 64.901194 1.812252687 0.343687 5 62 SH6150 6150 snR39B 91-96 + 3' 91 28.117178 67.69095 47.904064 1.680372359 0.134672 5 63 SH7913 7913 snoRNA cluster1 intergenic/snR72 26.913184 99.400193 26.913184 73.487009 50.2000965 1.700704552 -0.028446 5 64 SH10909 10909 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1431 1448 40470.34904 22806.49724 31638.42314 4.50021483 -0.172217 5 65 SH7031 7031 snR62 5' 31.132056 77.985039 54.5585475 1.7368628 0.188461 5 66 SH2607 2607 Pro3 5' flank - tRNA2 2 31.401651 83.52477 57.4632105 1.759389887 0.104491 5 67 SH3816 3816 RNaseP RNaseP 46 58 29.126613 93.758778 61.4426955 1.78847026 -0.174971 5 68 SH17101 17101 YHL001W_8_104270_105084_INTRON_130_527 intron 26.615604 95.257406 26.615604 69.641802 48.128703 1.682404158 0.001713 5 69 SH6193 6193 snR40 snR40 26 41 40.306004 96.37103 68.338517 1.83466555 0.081541 5 70 SH667 667 Gln2 3' flank 30.038859 87.52516 58.7820095 1.769244429 -0.027265 5 71 SH18336 18336 YML124C_13_23684_22049_INTRON_26_323 exon/intron 26.638599 92.403744 26.638599 66.765145 46.701872 1.669334289 0.043855 5 72 SH20777 20777 YKL006C-A spliced 32.171644 98.968623 65.5701335 1.816706068 -0.162007 5 73 SH17420 17420 YIL111W_9_155219_155762_INTRON_2_89 intron 29.031867 108.280336 29.031867 80.248469 54.640168 1.737512026 0.028218 5 74 SH4291 4291 telomerase RNA telomerase 491 510 27.252793 79.550307 53.40155 1.727553863 -0.082185 5 75 SH20079 20079 YCR031C spliced 29.501615 76.4577 52.9796575 1.724109146 0.106909 5 76 SH13470 13470 MT COX1 intronic 26.476996 102.657322 26.476996 77.180326 51.828661 1.714569989 -0.106968 5 77 SH13353 13353 MT COX1 intronic 30.53047 130.116581 30.53047 100.586111 65.5582905 1.81662762 -0.23968 5 78 SH14830 14830 "MT tRNAs (Lys, Arg1, Gly)" 3' 26.566343 98.409205 26.566343 72.842862 49.7046025 1.696396605 -0.044978 5 79 SH4356 4356 telomerase RNA telomerase 816 835 29.784046 81.547536 55.665791 1.745588385 0.060335 5 80 SH3207 3207 Ser5 3' flank 27.912011 69.891457 48.901734 1.689324259 0.08987 5 81 SH1379 1379 Leu1 5' flank 27.627817 92.276454 59.9521355 1.777804657 -0.221026 5 82 SH6721 6721 snR49 snR49 131 152 29.176389 84.839161 57.007775 1.755934091 -0.018123 5 83 SH7277 7277 snR65 3' 28.487672 74.101502 51.294587 1.710071537 0.072353 5 84 SH6312 6312 snR42 341-351 + 3' 341 25.718869 69.55916 47.6390145 1.677962769 -0.06315 5 85 SH7141 7141 snR63 snR63 211 223 38.405443 95.560531 66.982987 1.82596451 0.059221 5 86 SH21120 21120 YNL112W spliced 45.420116 102.824427 74.1222715 1.86994872 0.049807 5 87 SH6971 6971 snR60 5' 28.568975 74.378339 51.473657 1.711585024 0.073989 5 88 SH8289 8289 snoRNA cluster4 intergenic 27.321488 100.433265 27.321488 74.111777 50.7166325 1.705150409 -0.007572 5 89 SH10956 10956 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1666 1683 491.716476 413.279666 452.498071 2.655616732 0.413612 5 90 SH13618 13618 MT ATP6 5' / ATP6 27.460093 102.02936 27.460093 75.569267 51.51468 1.711931006 -0.016515 5 91 SH3858 3858 RNaseP RNaseP 256 271 27.032806 69.214459 48.1236325 1.682358402 0.037573 5 92 SH19153 19153 YPL075W_16_412249_415357_INTRON_9_759 intron 31.107723 98.2036 31.107723 68.095877 49.6018 1.695497437 0.322753 5 93 SH17757 17757 YKL157W_11_154993_158183_INTRON_282_664 intron 25.936292 90.491547 25.936292 65.555255 45.7457735 1.660350975 0.011265 5 94 SH165 165 Arg2 5' flank 25.227765 60.027143 42.627454 1.629689394 0.049019 5 95 SH12000 12000 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6886 6903 39.501692 134.330796 86.916244 1.93910095 -0.609863 5 96 SH677 677 Gln3 5' flank 28.062221 87.800326 57.9312735 1.762913076 -0.125834 5 97 SH1501 1501 Leu3 5' flank 26.383134 76.782348 51.582741 1.712504416 -0.108846 5 98 SH14756 14756 MT ORF11; tRNA Leu; tRNA Gln ORF11 31.557712 113.682248 31.557712 83.124536 57.341124 1.758466202 0.118557 5 99 SH1261 1261 Ile2 tRNA 1 13 26.443742 66.95558 46.699661 1.669313728 0.026983 5 100 SH3407 3407 Thr4 3' flank 27.799118 80.684173 54.2416455 1.734332856 -0.058958 5 101 SH12240 12240 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.03897 124.870903 35.03897 90.831933 62.9354515 1.798895352 0.085181 5 102 SH4927 4927 snR9 snR9 41 57 32.704765 71.106279 51.905522 1.715213563 0.373772 5 103 SH8992 8992 snR17a / U3a U3a 246 262 56.077971 146.553332 101.3156515 2.005676541 -0.446088 5 104 SH1121 1121 Gly4 3' flank 31.46651 99.179375 65.3229425 1.815065739 -0.185268 6 2 SH2565 2565 Pro2 tRNA-intron/exon 61 75 44.580246 105.155706 74.867976 1.874296092 -0.011662 6 3 SH16144 16144 YDR092W_4_629869_630598_INTRON_31_298 intron 31.414537 125.060261 31.414537 94.645724 63.0301305 1.799548206 -0.091668 6 4 SH21900 21900 copy of SH19200 31.692424 77.902095 54.7972595 1.738758839 0.22314 6 5 SH12621 12621 MT_15S MT_15S 31.682517 128.510067 31.682517 97.82755 64.7550335 1.811273532 -0.151553 6 6 SH10690 10690 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 336 354 29.42002 86.093016 57.756518 1.761601003 -0.029604 6 7 SH13076 13076 MT COX1 COX1ai3 25.8936 94.22217 25.8936 69.32857 47.611085 1.677708079 -0.046924 6 8 SH15881 15881 YDL082W_4_308423_309387_INTRON_5_369 intron 30.219461 112.890598 30.219461 83.671137 56.945299 1.755457878 0.050421 6 9 SH4680 4680 snR4 5' 39.265831 74.906231 57.086031 1.756529849 0.572094 6 10 SH17106 17106 YHR001W-A_8_107819_108115_INTRON_7_69 5' exon 24.71378 106.428091 24.71378 82.714311 53.7140455 1.730087863 -0.306134 6 11 SH16858 16858 YGL187C_7_150529_149708_INTRON_1_342 5' exon 28.774115 115.667294 28.774115 87.893179 58.333647 1.765919129 -0.091329 6 12 SH9186 9186 snR7 U5 RNA U5 201 213 4508.977011 2635.519578 3572.248295 3.552941638 0.379258 6 13 SH18915 18915 YOL120C_15_94401_93394_INTRON_113_559 3' exon 31.914636 103.727086 31.914636 72.81245 52.363543 1.719029024 0.303953 6 14 SH9308 9308 RUF1 RUF1 116 133 28.702316 67.840135 48.2712255 1.683688325 0.172225 6 15 SH6284 6284 snR42 snR42 201 220 27.478751 80.533253 54.006002 1.732442028 -0.078923 6 16 SH2118 2118 Met1 5' flank 28.062887 84.534897 56.298892 1.750499848 -0.087843 6 17 SH18918 18918 YOL121C_15_92849_92025_INTRON_21_410 5' exon 39.641366 145.424967 39.641366 106.783601 73.2124835 1.864585139 -0.143459 6 18 SH7803 7803 snoRNA cluster1 snR75 30.760699 99.190241 30.760699 69.429542 50.0951205 1.699795426 0.282196 6 19 SH9240 9240 snR6 / U6 RNA U6 71 86 58.388495 146.417292 102.4028935 2.010312228 -0.403723 6 20 SH626 626 Gln2 5' flank 27.369297 72.466427 49.917862 1.698255976 0.017338 6 21 SH14597 14597 MT 21S rRNA Sce1 endonuc 29.607121 112.563191 29.607121 83.95607 56.7815955 1.754207592 0.017763 6 22 SH6552 6552 snR46 3' 26.615891 74.275668 50.4457795 1.702824837 -0.060081 6 23 SH5107 5107 snR11 snR11 136 151 32.69247 81.367288 57.029879 1.75610245 0.198892 6 24 SH7933 7933 snoRNA cluster1 snR72/3' 35.182169 124.402574 35.182169 90.220405 62.701287 1.797276455 0.102384 6 25 SH16617 16617 YFL039C_6_54695_53260_INTRON_11_318 intron 29.252931 122.162508 29.252931 93.909577 61.581254 1.789448528 -0.171666 6 26 SH11299 11299 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3381 3398 411.013559 379.165705 395.089632 2.596695633 0.323432 6 27 SH9730 9730 RUF4 RUF4 426 442 32.072509 94.874936 63.4737225 1.802593969 -0.078863 6 28 SH2749 2749 Pro5 3' flank 29.158425 98.973807 64.066116 1.806628396 -0.257248 6 29 SH18578 18578 YNL044W_14_545264_545873_INTRON_25_103 intron 29.805893 111.810677 29.805893 83.004784 56.4053385 1.75132021 0.043983 6 30 SH10440 10440 RUF8 RUF8 126 142 37.608283 109.240264 73.4242735 1.865839658 -0.233995 6 31 SH5221 5221 snR30 5' 28.465149 70.334869 49.400009 1.693727028 0.121592 6 32 SH21217 21217 YOR122C spliced 35.084134 102.957798 69.020966 1.838981033 -0.168986 6 33 SH1527 1527 Leu3 106-114 + 3' flank 106 28.024182 75.32707 51.675626 1.713285746 0.025022 6 34 SH5824 5824 snR35 snR35 306 323 27.780174 71.078559 49.4293665 1.693985044 0.064591 6 35 SH2783 2783 Pro6 tRNA 6 22 86.194678 135.560952 110.877815 2.044844659 0.147942 6 36 SH12264 12264 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.620096 131.05116 31.620096 100.431064 66.02558 1.819712225 -0.206574 6 37 SH851 851 Glu2 tRNA 21 37 100.748808 145.983974 123.366391 2.09119686 0.187971 6 38 SH13960 13960 MT COB Cytbi3 25.785241 97.512124 25.785241 72.726883 49.256062 1.692459687 -0.10092 6 39 SH108 108 Arg1 5' flank 26.299435 78.200058 52.2497465 1.718084188 -0.132521 6 40 SH3435 3435 Trp1 tRNA 6 18 100.618017 145.635454 123.1267355 2.090352365 0.190677 6 41 SH19300 19300 YPL198W_16_173151_174701_INTRON_12_420 intron 30.357686 116.265796 30.357686 86.90811 58.632898 1.76814136 -0.002189 6 42 SH15955 15955 YDL130W_4_229906_230527_INTRON_115_415 intron 25.345351 102.648094 25.345351 78.302743 51.824047 1.714531325 -0.204943 6 43 SH18006 18006 YLR287C-A_12_713158_712537_INTRON_4_433 intron 31.642102 121.990304 31.642102 91.348202 61.495152 1.788840879 -0.023808 6 44 SH10349 10349 RUF7 RUF7 356 375 27.832208 88.476389 58.1542985 1.764581821 -0.149021 6 45 SH18334 18334 YML124C_13_23684_22049_INTRON_26_323 5' exon 28.497534 122.718419 28.497534 95.220885 61.8592095 1.791404366 -0.228133 6 46 SH1365 1365 Ile3 3' flank 33.326731 76.348149 54.83744 1.739077172 0.323105 6 47 SH15662 15662 YBR189W_2_604466_605466_INTRON_8_420 intron 37.881511 136.817008 37.881511 99.935497 68.908504 1.838272822 -0.044414 6 48 SH17635 17635 YJR094W-A_10_608000_608553_INTRON_3_277 intron 30.55056 100.563698 30.55056 71.013138 50.781849 1.70570851 0.246701 6 49 SH19398 19398 YPR063C_16_678315_677807_INTRON_42_127 exon/intron 27.668872 100.763153 27.668872 74.094281 50.8815765 1.706560559 0.016986 6 50 SH20164 20164 YDL136W spliced 43.122454 117.092734 80.107594 1.903673688 -0.257919 6 51 SH19010 19010 YOR182C_15_678792_678190_INTRON_4_414 intron 26.255724 101.20899 26.255724 75.953266 51.104495 1.708459101 -0.107751 6 52 SH6835 6835 snR52 81-92 + 3' 81 27.433988 77.971116 52.702552 1.721831645 -0.049624 6 53 SH6928 6928 snR58 snR58 1 21 27.778952 79.065102 53.422027 1.727720362 -0.04003 6 54 SH1270 1270 Ile2 tRNA-intron 46 61 26.841955 75.12715 50.9845525 1.707438612 -0.054731 6 55 SH2766 2766 Pro6 5' flank 36.453209 113.594805 75.024007 1.875200256 -0.340285 6 56 SH6333 6333 snR43 5' 48.7018 113.264571 80.9831855 1.908394856 -0.083028 6 57 SH1197 1197 Ile1 5' flank 32.681527 74.412814 53.5471705 1.728736527 0.326925 6 58 SH15550 15550 YBR078W_2_393082_394818_INTRON_59_388 intron 28.092908 97.758065 28.092908 70.665157 49.3790325 1.693542576 0.091746 6 59 SH19776 19776 Negative Control 28.681815 86.075237 57.378526 1.758749387 -0.064818 6 60 SH12946 12946 MT COX1 COX1ai2 26.769412 108.621126 26.769412 82.851714 54.810563 1.738864263 -0.156617 6 61 SH16297 16297 YDR450W_4_1359912_1360787_INTRON_48_482 intron 26.908893 109.27531 26.908893 83.366417 55.137655 1.741448292 -0.153026 6 62 SH16203 16203 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron/exon 28.031018 117.505249 28.031018 90.474231 59.2526245 1.772707591 -0.171122 6 63 SH17129 17129 YHR010W_8_126513_127484_INTRON_32_592 intron 26.664907 92.397729 26.664907 66.732822 46.6988645 1.669306321 0.046221 6 64 SH9575 9575 RUF3 RUF3 261 277 30.73141 101.985876 66.358643 1.821897496 -0.262137 6 65 SH15430 15430 YBL072C_2_89435_88518_INTRON_1_308 intron 30.486207 125.281591 30.486207 95.795384 63.1407955 1.800310049 -0.147153 6 66 SH2804 2804 Pro6 3' flank 26.21202 63.35668 44.78435 1.651126275 0.065698 6 67 SH10894 10894 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1356 1376 153.635027 177.071141 165.353084 2.218412299 0.35118 6 68 SH5905 5905 snR36 5' 40.363833 116.70615 78.5349915 1.895063201 -0.308204 6 69 SH19077 19077 YOR293W_15_867094_867848_INTRON_53_489 intron 26.704898 105.102903 26.704898 79.398005 53.0514515 1.724697271 -0.118532 6 70 SH18079 18079 YLR344W_12_819312_820142_INTRON_20_466 intron 26.937544 90.673269 26.937544 64.735725 45.8366345 1.661212723 0.094967 6 71 SH8255 8255 snoRNA cluster4 5' 29.137737 133.07588 29.137737 104.938143 67.03794 1.82632066 -0.365601 6 72 SH5781 5781 snR35 snR35 91 105 38.144629 79.435778 58.7902035 1.769304963 0.430002 6 73 SH7173 7173 snR64 5' 29.258526 71.941067 50.5997965 1.70414877 0.152284 6 74 SH12153 12153 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7651 7666 132.218212 178.651534 155.434873 2.191548463 0.157335 6 75 SH9019 9019 snR17a / U3a U3a 381 402 27.279838 72.04181 49.660824 1.696013921 0.016673 6 76 SH4367 4367 telomerase RNA telomerase 871 888 28.466673 100.104782 64.2857275 1.808114563 -0.30696 6 77 SH14505 14505 MT 21S rRNA 21S rRNA3 50.011469 171.674034 50.011469 122.662565 86.337017 1.936197039 -0.216564 6 78 SH11414 11414 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3956 3973 3377.193708 1925.486322 2651.340015 3.423465426 0.499657 6 79 SH3541 3541 Tyr2 5' flank 37.937879 99.705162 68.8215205 1.837724263 -0.038431 6 80 SH6586 6586 snR47 snR47 36 55 27.02133 85.295097 56.1582135 1.749413284 -0.168068 6 81 SH6408 6408 snR43 3' 29.169351 85.933217 57.551284 1.760055017 -0.038183 6 82 SH18520 18520 YMR225C_13_721402_720959_INTRON_59_205 5' exon 26.553209 92.973673 26.553209 67.420464 46.9868365 1.671976206 0.028299 6 83 SH15858 15858 YDL079C_4_314747_312950_INTRON_413_704 intron 28.732809 102.88942 28.732809 75.156611 51.94471 1.715541326 0.074341 6 84 SH19488 19488 YPT1 28.700487 103.795792 66.2481395 1.821173686 -0.356297 6 85 SH6525 6525 snR46 snR46 116 133 28.449387 89.466832 58.9581095 1.770543549 -0.133972 6 86 SH8665 8665 LSR1 / U2 RNA 5' 28.5704 77.043832 52.807116 1.72269245 0.03883 6 87 SH13291 13291 MT COX1 COX1-ai5a 27.032342 108.802626 27.032342 82.770284 54.901313 1.739582731 -0.137216 6 88 SH6576 6576 snR47 5' - 2 -14 2 30.109085 101.514543 65.811814 1.818303862 -0.270217 6 89 SH9204 9204 snR7 U5 RNA 3' 27.883134 72.107974 49.995554 1.698931385 0.057917 6 90 SH14326 14326 MT VAR1 includes 5’ processing site VAR1 27.465103 99.33943 27.465103 72.874327 50.169715 1.700441634 0.018682 6 91 SH5417 5417 snR31 snR31 151 163 98.27173 141.688912 119.980321 2.07911002 0.212875 6 92 SH21482 21482 copy of SH1655 28.553132 85.256255 56.9046935 1.755148088 -0.063719 6 93 SH1480 1480 Leu2 3' flank 32.34129 117.777169 75.0592295 1.875404102 -0.513335 6 94 SH19825 19825 Negative Control 29.167563 88.028412 58.5979875 1.767882701 -0.07553 6 95 SH15630 15630 YBR181C_2_592732_591670_INTRON_7_358 intron/exon 24.034099 84.412811 24.034099 61.378712 42.7064055 1.630493019 -0.06421 6 96 SH9752 9752 RUF4 RUF4 536 548 34.71775 97.099598 65.908674 1.818942574 -0.05819 6 97 SH16329 16329 YDR471W_4_1401759_1402553_INTRON_32_415 intron 24.432157 95.897788 24.432157 72.465631 48.448894 1.685283867 -0.201272 6 98 SH1267 1267 Ile2 tRNA exon/intron 31 47 29.92424 80.090483 55.0073615 1.740420814 0.087234 6 99 SH4476 4476 U3b (snR17b) 5' 30.805205 84.38327 57.5942375 1.760379033 0.063005 6 100 SH21360 21360 Ile2_3 spliced 30.249257 89.670292 59.9597745 1.777859991 -0.05538 6 101 SH18250 18250 YML034W_13_209525_212155_INTRON_1921_2046 intron 40.068885 144.42841 40.068885 105.359525 72.714205 1.86161926 -0.107034 6 102 SH2949 2949 Ser1 5' flank 44.981244 121.867865 83.4245545 1.921293896 -0.299861 6 103 SH1235 1235 Ile1 3' flank 28.40367 80.384304 54.393987 1.735550893 -0.014693 6 104 SH7334 7334 snR66 3' 35.624542 96.947858 66.2862 1.821423123 -0.032976 7 2 SH15012 15012 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.003248 115.599373 29.003248 87.596125 58.2996865 1.765666219 -0.075476 7 3 SH13868 13868 MT COB intronic 24.856562 94.192534 24.856562 70.335972 47.596267 1.677572892 -0.139483 7 4 SH7097 7097 snR63 5' - 10 -9 10 26.949644 66.783415 46.8665295 1.670862795 0.065949 7 5 SH6622 6622 snR48 5' 27.016523 78.920943 52.968733 1.724019585 -0.090639 7 6 SH8461 8461 snoRNA cluster 5 snR128/3' 38.114678 129.518827 38.114678 92.404149 65.2594135 1.814643166 0.122248 7 7 SH3553 3553 Tyr2 tRNA-exon/intron 36 55 27.219057 74.398339 50.808698 1.705938066 -0.018509 7 8 SH8336 8336 snoRNA cluster4 snR53 30.69852 131.930275 30.69852 102.231755 66.4651375 1.822593908 -0.267942 7 9 SH12981 12981 MT COX1 COX1ai2 25.550281 106.868159 25.550281 82.317878 53.9340795 1.731863271 -0.237969 7 10 SH19221 19221 YPL081W_16_404945_406039_INTRON_8_508 3' exon 35.018757 129.91531 35.018757 95.896553 65.457655 1.815960443 -0.025494 7 11 SH20829 20829 YKR094C spliced 26.000614 91.731916 58.866265 1.769866481 -0.313463 7 12 SH6078 6078 snR37 snR37 306 322 31.446428 91.740701 61.5935645 1.789535338 -0.038743 7 13 SH2433 2433 Phe5 5' flank 30.027103 110.626686 70.3268945 1.84712144 -0.447101 7 14 SH14002 14002 MT COB intronic 26.546449 145.264618 26.546449 119.718169 73.132309 1.864109286 -0.712787 7 15 SH5482 5482 snR32 snR32 71 86 38.335416 177.952483 108.1439495 2.034002226 -1.189385 7 16 SH14408 14408 MT 21S rRNA 21S rRNA3 301.827453 625.441173 301.827453 324.61372 313.2205865 2.495850298 0.181319 7 17 SH19944 19944 YBL040C spliced 26.043464 67.820076 46.93177 1.671466934 -0.014701 7 18 SH8769 8769 LSR1 / U2 RNA U2 486 498 40.318378 101.210821 70.7645995 1.849816053 -0.019275 7 19 SH8390 8390 snoRNA cluster 5 snR190 29.480589 97.549202 29.480589 69.068613 49.274601 1.692623116 0.206528 7 20 SH17023 17023 YGR148C_7_788173_787307_INTRON_1_392 intron 27.60602 111.850995 27.60602 85.244975 56.4254975 1.751475397 -0.127145 7 21 SH385 385 Asn1 6-20 6 20 29.482193 97.31508 63.3986365 1.802079918 -0.216323 7 22 SH15709 15709 YBR220C_2_663261_662457_INTRON_302_722 intron 30.634274 118.35411 30.634274 88.719836 59.677055 1.775807383 -0.021968 7 23 SH3753 3753 Val4 5' flank - tRNA3 3 44.432802 89.271768 66.852285 1.825116256 0.319575 7 24 SH175 175 Arg2 5' flank - tRNA7 5' flank 7 28.239342 71.26221 49.750776 1.696799859 0.093685 7 25 SH19824 19824 Negative Control 29.4687 89.450236 59.459468 1.774221019 -0.08657 7 26 SH5710 5710 snR34 snR34 471 490 29.277372 70.403063 49.8402175 1.697579929 0.174844 7 27 SH13217 13217 MT COX1 COX1-ai4 28.212505 113.891436 28.212505 86.678931 57.445718 1.759257662 -0.102901 7 28 SH6791 6791 snR50 3' 27.709336 72.903977 50.3066565 1.701625454 0.035341 7 29 SH9901 9901 RUF5-1 RUF5-1 311 332 27.035853 77.933851 52.484852 1.720033977 -0.07669 7 30 SH4519 4519 U3b (snR17b) U3b 151 168 33.391213 91.821172 62.6061925 1.796617292 0.022014 7 31 SH9533 9533 RUF3 RUF3 51 69 26.318549 68.697022 47.5077855 1.676764787 -0.006794 7 32 SH9369 9369 RUF1 RUF1 421 438 28.192832 79.995585 54.0942085 1.733150771 -0.023878 7 33 SH17579 17579 YJL191W_10_73786_74610_INTRON_11_418 intron 34.479731 123.912715 34.479731 90.432984 62.4563575 1.795576652 0.080367 7 34 SH5840 5840 snR35 snR35 386 398 51.61696 108.621296 80.119128 1.903736214 0.052287 7 35 SH9860 9860 RUF5-1 RUF5-1 106 127 31.737453 95.460403 63.598928 1.803449795 -0.100331 7 36 SH3370 3370 Thr4 5' flank 28.202502 73.157808 50.680155 1.704837934 0.06598 7 37 SH2629 2629 Pro3 96-103 + 3' flank 96 31.37376 89.372337 60.3730485 1.780843106 -0.001379 7 38 SH20324 20324 YER056C-A spliced 40.660287 104.352219 72.506253 1.860375462 -0.07499 7 39 SH6790 6790 snR50 3' 30.21893 83.819268 57.019099 1.75602035 0.047662 7 40 SH17667 17667 YKL006C-A_11_430270_429836_INTRON_37_177 intron 28.362407 109.60028 28.362407 82.237873 55.30014 1.742726231 -0.040257 7 41 SH8137 8137 snoRNA cluster 3; snR41/intergenic 30.374911 106.334696 30.374911 76.959785 53.667348 1.729710135 0.155321 7 42 SH13323 13323 MT COX1 COX1-ai5a 25.298114 89.003818 25.298114 64.705704 45.001909 1.653230937 -0.022046 7 43 SH1280 1280 Ile2 tRNA-intron/exon 96 108 40.297874 102.837562 71.567718 1.85471717 -0.052583 7 44 SH6426 6426 snR45 5' 27.766175 69.712042 48.7391085 1.687877581 0.082248 7 45 SH10625 10625 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 11 31 26.225516 75.545753 50.8856345 1.706595194 -0.104806 7 46 SH217 217 Arg3 5' flank 28.722868 89.701787 59.2123275 1.772412133 -0.125224 7 47 SH16517 16517 YER117W_5_396765_397649_INTRON_43_513 3' exon 27.612032 103.812517 27.612032 77.200485 52.4062585 1.719383155 -0.027491 7 48 SH8679 8679 LSR1 / U2 RNA U2 36 53 26.199335 70.51384 48.3565875 1.684455645 -0.040586 7 49 SH17243 17243 YHR079C-A_8_262554_262193_INTRON_114_199 3' exon 32.227796 124.462993 32.227796 93.235197 62.7314965 1.797485648 -0.039331 7 50 SH6734 6734 snR49 3' 43.355303 109.807495 76.581399 1.884123296 -0.123341 7 51 SH19659 19659 SIR1 2.2 30.960892 102.673051 66.8169715 1.824886787 -0.269415 7 52 SH7195 7195 snR64 snR64 41 55 5919.113899 7607.421196 6763.267548 3.830156568 -0.945216 7 53 SH1170 1170 His1 71-72 + 3' flank 71 29.29003 74.425903 51.8579665 1.714815483 0.120313 7 54 SH17004 17004 YGR148C_7_788173_787307_INTRON_1_392 5' exon 27.353058 104.906506 27.353058 78.553448 52.953253 1.723892645 -0.06264 7 55 SH9137 9137 snR7 U5 RNA 5' 28.347891 64.290212 46.3190515 1.665759658 0.199871 7 56 SH11954 11954 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6656 6671 1063.353289 836.677097 950.015193 2.977730551 0.291895 7 57 SH9111 9111 snR14 / U4 RNA 3' 27.942409 76.454176 52.1982925 1.717656297 0.004646 7 58 SH8836 8836 LSR1 / U2 RNA U2 821 837 28.574611 85.352332 56.9634715 1.755596448 -0.063429 7 59 SH1991 1991 Lys3 5' flank 26.711141 77.590265 52.150703 1.717260167 -0.095095 7 60 SH3490 3490 Tyr1 5' flank - tRNA7 7 31.343173 89.917332 60.6302525 1.782689377 -0.012089 7 61 SH225 225 Arg3 5' flank - tRNA2 5' flank 2 26.548211 70.694139 48.621175 1.68682545 -0.017561 7 62 SH10540 10540 RUF8 RUF8 626 642 28.268542 92.354134 60.311338 1.780398963 -0.191642 7 63 SH1940 1940 Lys2 5' flank 25.523478 94.138825 59.8311515 1.776927361 -0.374292 7 64 SH12863 12863 MT COX1 COX1ai1 27.190957 94.518304 27.190957 68.327347 47.759152 1.679056607 0.061185 7 65 SH16228 16228 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 33.708115 109.001076 33.708115 76.292961 55.000538 1.740366938 0.339453 7 66 SH5784 5784 snR35 snR35 106 125 60.96941 125.540487 93.2549485 1.969671887 -0.070166 7 67 SH4541 4541 U3b (snR17b) U3b 261 278 30.659331 77.179833 53.919582 1.731746517 0.170023 7 68 SH14537 14537 MT 21S rRNA 21S rRNA3 26.490012 103.354246 26.490012 77.864234 52.177123 1.717480129 -0.114487 7 69 SH17530 17530 YJL177W_10_90783_91654_INTRON_310_626 5' exon 29.139149 99.366193 29.139149 71.227044 50.1830965 1.700557456 0.154565 7 70 SH3093 3093 Ser3 3' flank 34.10028 99.347385 66.7238325 1.824280983 -0.120001 7 71 SH4259 4259 telomerase RNA telomerase 331 348 27.083087 75.057193 51.07014 1.708167048 -0.036614 7 72 SH16500 16500 YER117W_5_396765_397649_INTRON_43_513 intron 29.203304 108.055749 29.203304 79.852445 54.5278745 1.736618569 0.044264 7 73 SH20622 20622 YHR101C spliced 29.535466 84.119297 56.8273815 1.754557645 0.011515 7 74 SH21285 21285 YPL143W spliced 30.006025 88.853059 59.429542 1.774002383 -0.052023 7 75 SH7264 7264 snR65 96-100 + 3' 96 27.313362 81.926054 54.619708 1.737349374 -0.107466 7 76 SH7398 7398 snR68 3' 26.231729 68.649906 47.4408175 1.676152164 -0.012499 7 77 SH5677 5677 snR34 snR34 306 325 36.407982 84.642828 60.525405 1.781937704 0.261245 7 78 SH1022 1022 Gly2 3' flank 27.776003 72.47442 50.1252115 1.700056218 0.045639 7 79 SH18973 18973 YOR096W_15_505793_506766_INTRON_145_545 intron 32.798753 125.463299 32.798753 93.664546 63.2316495 1.800934511 -0.033651 7 80 SH1319 1319 Ile3 5' flank 28.356729 76.181139 52.268934 1.718243643 0.03596 7 81 SH14596 14596 MT 21S rRNA Sce1 endonuc 25.747769 96.324636 25.747769 71.576867 48.662318 1.687192792 -0.088426 7 82 SH9340 9340 RUF1 RUF1 276 290 48.979393 118.967625 83.973509 1.924142301 -0.175822 7 83 SH4480 4480 U3b (snR17b) 5' 28.341026 67.501196 47.921111 1.680526878 0.152636 7 84 SH5045 5045 snR10 3' 26.729872 70.842087 48.7859795 1.688295029 -0.006434 7 85 SH17143 17143 YHR010W_8_126513_127484_INTRON_32_592 intron 31.51573 112.067571 31.51573 81.551841 56.5337855 1.752308067 0.146324 7 86 SH18840 18840 YNL302C_14_62942_61957_INTRON_21_571 3' exon 29.383615 107.885434 29.383615 79.501819 54.442717 1.735939791 0.060268 7 87 SH20238 20238 YDR305C spliced 29.797479 84.91544 57.3564595 1.758582335 0.008764 7 88 SH13030 13030 MT COX1 COX1ai2 30.066396 109.93657 30.066396 80.870174 55.468285 1.744044738 0.086464 7 89 SH14843 14843 MT tRNA Asp tRNA / 3' 27.409128 101.828787 27.409128 75.419659 51.4143935 1.711084717 -0.018191 7 90 SH9798 9798 RUF4 RUF4 766 782 36.005291 103.253378 69.6293345 1.842792244 -0.153575 7 91 SH10923 10923 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1501 1519 21115.86845 10197.26157 15656.56501 4.194696486 0.24932 7 92 SH2521 2521 Pro1 3' flank 29.824178 80.885949 55.3550635 1.743157353 0.071028 7 93 SH10223 10223 RUF6 RUF6 961 973 139.480754 149.600861 144.5408075 2.159990477 0.522155 7 94 SH12642 12642 MT_15S MT_15S 25.652948 111.977984 25.652948 87.325036 56.488992 1.751963825 -0.289534 7 95 SH43 43 Ala1 3' flank 26.342283 85.859961 56.101122 1.748971547 -0.222632 7 96 SH5987 5987 snR36 3' 22.845957 75.276456 49.0612065 1.690738224 -0.366391 7 97 SH18088 18088 YLR344W_12_819312_820142_INTRON_20_466 3' exon 20.416611 73.297085 20.416611 53.880474 37.1485425 1.569941779 -0.214755 7 98 SH16507 16507 YER117W_5_396765_397649_INTRON_43_513 intron 32.225852 114.134354 32.225852 82.908502 57.567177 1.760174933 0.150624 7 99 SH13850 13850 MT COB Cytbi2 27.214046 106.888397 27.214046 80.674351 53.9441985 1.731944745 -0.098914 7 100 SH9577 9577 RUF3 RUF3 271 290 29.972583 82.442408 56.2074955 1.749794234 0.061297 7 101 SH8944 8944 snR17a / U3a U3a 6 23 26.575882 68.509951 47.5429165 1.67708582 0.014561 7 102 SH7366 7366 snR68 snR68 51 70 28.169488 88.680992 58.42524 1.766600505 -0.133557 7 103 SH12902 12902 MT COX1 Exon2 28.448723 113.359989 28.448723 85.911266 57.1799945 1.757244109 -0.078284 7 104 SH19029 19029 YOR182C_15_678792_678190_INTRON_4_414 intron/exon 28.534358 98.012191 28.534358 70.477833 49.5060955 1.694658675 0.12432 8 2 SH21118 21118 YNL096C spliced 26.811274 90.515339 58.6633065 1.768366538 -0.242247 8 3 SH9230 9230 snR6 / U6 RNA U6 21 38 24.53522 77.658405 51.0968125 1.708393809 -0.259576 8 4 SH13087 13087 MT COX1 COX1ai3 43.437662 151.170087 43.437662 108.732425 76.0850435 1.881299293 -0.101758 8 5 SH18960 18960 YOL127W_15_80347_81189_INTRON_14_427 intron 28.787152 97.034226 28.787152 69.247074 49.017113 1.690347729 0.158212 8 6 SH13207 13207 MT COX1 COX1-ai4 27.291956 96.388871 27.291956 70.096915 48.6944355 1.687479336 0.04379 8 7 SH9660 9660 RUF4 RUF4 76 94 25.316195 82.592574 53.9543845 1.732026743 -0.258647 8 8 SH12369 12369 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.305809 112.84149 33.305809 80.535681 56.920745 1.755270576 0.239661 8 9 SH11739 11739 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5581 5599 27.961968 69.101486 48.531727 1.686025746 0.104221 8 10 SH19988 19988 YBL092W spliced 40.478345 95.059395 67.76887 1.831030244 0.113317 8 11 SH20612 20612 YHR079C-A spliced 30.980855 84.557486 57.7691705 1.761696132 0.067424 8 12 SH16200 16200 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 33.415654 112.499023 33.415654 80.083369 56.7495115 1.753962127 0.252781 8 13 SH11673 11673 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5251 5269 7850.244797 3337.693698 5593.969248 3.747720075 0.726869 8 14 SH12382 12382 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.676595 118.260418 32.676595 86.583823 59.630209 1.775466332 0.102114 8 15 SH1813 1813 Leu8 91-101 + 3' flank 91 24.663098 52.19871 38.430904 1.5846806 0.157761 8 16 SH10851 10851 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1141 1161 219.74666 234.714669 227.2306645 2.356466939 0.314216 8 17 SH18370 18370 YMR079W_13_424988_426058_INTRON_10_165 intron 26.335303 97.571812 26.335303 72.236509 49.285906 1.692722744 -0.053778 8 18 SH12685 12685 MT tRNA Trp 3' 29.302491 100.977569 29.302491 72.675078 50.9887845 1.707474659 0.144949 8 19 SH3898 3898 RNase MRP 5' 27.597008 89.472697 58.5348525 1.767414528 -0.176223 8 20 SH5634 5634 snR34 snR34 91 108 30.214538 80.099434 55.156986 1.741600527 0.105312 8 21 SH14249 14249 MT tRNA Ser 3' 27.33875 109.431339 27.33875 83.092589 55.2156695 1.742062342 -0.119871 8 22 SH16055 16055 YDL191W_4_117665_118518_INTRON_4_494 3' exon 40.029773 141.552765 40.029773 102.522992 71.2763825 1.85294565 -0.051756 8 23 SH3923 3923 RNase MRP RNaseMRP 31 48 28.098987 86.831559 57.465273 1.759405474 -0.112259 8 24 SH17317 17317 YHR203C_8_505526_504472_INTRON_15_283 3' exon 33.148984 132.765094 33.148984 100.61611 66.882547 1.825312803 -0.169953 8 25 SH20268 20268 YDR424C spliced 27.565645 81.647649 54.606647 1.73724551 -0.086734 8 26 SH4983 4983 snR10 5' 28.524346 79.774541 54.1494435 1.733593998 0.000919 8 27 SH14996 14996 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.65944 107.201302 28.65944 79.541862 54.100651 1.733202491 0.012746 8 28 SH18020 18020 YLR306W_12_744151_744851_INTRON_4_137 intron 28.052714 105.837351 28.052714 78.784637 53.4186755 1.727693116 -0.017994 8 29 SH3224 3224 Thr1 5' flank 34.159887 93.796816 63.9783515 1.806033046 -0.001762 8 30 SH8634 8634 snR19 / U1 RNA 666-668 + 3' 666 26.616098 75.419381 51.0177395 1.707721212 -0.074729 8 31 SH4660 4660 snR3 3' 28.475374 66.531199 47.5032865 1.676723657 0.175633 8 32 SH14982 14982 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.119101 111.58617 28.119101 84.467069 56.293085 1.75045505 -0.083269 8 33 SH3767 3767 Val4 tRNA 61 73 30.123973 76.315605 53.219789 1.726073148 0.148106 8 34 SH10738 10738 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 576 593 36.817428 89.909021 63.3632245 1.80183727 0.148237 8 35 SH2315 2315 Phe3 5' flank 32.200525 94.676388 63.4384565 1.802352608 -0.071204 8 36 SH19899 19899 snR17B spliced 27.524452 74.826001 51.1752265 1.709059774 -0.002522 8 37 SH10082 10082 RUF6 RUF6 256 278 40.544523 102.310232 71.4273775 1.853864705 -0.036958 8 38 SH18579 18579 YNL044W_14_545264_545873_INTRON_25_103 intron 27.647019 90.649916 27.647019 64.002897 45.824958 1.661102076 0.155957 8 39 SH17386 17386 YIL069C_9_232366_231550_INTRON_4_412 intron 36.024317 126.282321 36.024317 91.258004 63.6411605 1.80373809 0.099382 8 40 SH4231 4231 telomerase RNA telomerase 191 207 33.015352 84.489535 58.7524435 1.769025934 0.153796 8 41 SH14065 14065 MT COB Cytbi4 25.911354 103.673249 25.911354 78.761895 52.3366245 1.718805709 -0.16802 8 42 SH2554 2554 Pro2 tRNA 6 22 82.806078 145.877768 114.341923 2.058205492 -0.027928 8 43 SH10710 10710 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 436 449 46.730484 99.81177 73.271127 1.864932872 0.1345 8 44 SH13428 13428 MT COX1 intronic 23.182887 89.587045 23.182887 67.404158 45.2935225 1.656036097 -0.226773 8 45 SH15764 15764 YCR031C_3_178212_177492_INTRON_8_314 3' exon 30.31732 105.027881 30.31732 75.710561 53.0139405 1.724390086 0.16813 8 46 SH20733 20733 YJL189W spliced 35.371586 93.158041 64.2648135 1.807973252 0.041908 8 47 SH1528 1528 Leu3 111-114 + 3' flank 111 28.89167 69.45508 49.173375 1.691730017 0.162313 8 48 SH12292 12292 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.817246 107.669081 28.817246 79.851835 54.3345405 1.735075999 0.019198 8 49 SH13956 13956 MT COB Cytbi3 30.71902 133.35058 30.71902 103.63156 67.17529 1.82720955 -0.294988 8 50 SH18898 18898 YOL120C_15_94401_93394_INTRON_113_559 intron 26.279989 94.304414 26.279989 69.024425 47.652207 1.67808302 -0.01418 8 51 SH14547 14547 MT 21S rRNA 21S rRNA3 27.024049 107.500803 27.024049 81.476754 54.2504015 1.734402957 -0.122024 8 52 SH13419 13419 MT COX1 intronic 27.895472 95.325257 27.895472 68.429785 48.1626285 1.682710181 0.109009 8 53 SH6634 6634 snR48 5' - 16 -4 16 28.119809 79.561569 53.840689 1.731110609 -0.023318 8 54 SH18377 18377 YMR116C_13_500687_499455_INTRON_538_810 exon/intron 29.972671 105.788678 29.972671 76.816007 53.394339 1.727495214 0.132075 8 55 SH12207 12207 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7921 7946 2028.007072 1792.304767 1910.15592 3.281068819 -0.05338 8 56 SH8082 8082 snoRNA cluster 2 3' 26.32975 94.96502 26.32975 69.63527 47.98251 1.681082962 -0.018992 8 57 SH7943 7943 snoRNA cluster1 3' 28.719659 96.588713 28.719659 68.869054 48.7943565 1.688369595 0.158944 8 58 SH20193 20193 YDR005C spliced 31.227111 103.319276 67.2731935 1.827842044 -0.274838 8 59 SH10966 10966 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1716 1736 38.134923 81.931316 60.0331195 1.778390911 0.366972 8 60 SH13193 13193 MT COX1 Exon4 26.485524 95.265823 26.485524 69.780299 48.1329115 1.682442132 -0.009628 8 61 SH9198 9198 snR7 U5 RNA 3' 28.169226 87.086928 57.628077 1.760634128 -0.110495 8 62 SH2863 2863 Pro7 3' flank 47.243645 94.89742 71.0705325 1.851689569 0.246268 8 63 SH11216 11216 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2966 2984 41.697696 99.771556 70.734626 1.849632062 0.037943 8 64 SH10679 10679 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 281 296 363.465419 640.693775 502.079597 2.700772573 -0.677364 8 65 SH12744 12744 MT COX1 COX1ai1 45.949125 151.379534 45.949125 106.430409 76.189767 1.881896645 -0.01018 8 66 SH15097 15097 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 25.119178 111.368376 25.119178 87.249198 56.184188 1.749614109 -0.328283 8 67 SH230 230 Arg3 6-22 6 22 27.993472 74.272179 51.1328255 1.708699792 0.037076 8 68 SH13245 13245 MT COX1 COX1-ai4 27.334149 104.203409 27.334149 77.86926 52.6017045 1.720999817 -0.055185 8 69 SH3104 3104 Ser4 5' flank 31.31186 79.326059 55.3189595 1.742874003 0.180446 8 70 SH7912 7912 snoRNA cluster1 intergenic/snR72 27.231191 103.067903 27.231191 76.836712 52.0339515 1.716286808 -0.04893 8 71 SH18224 18224 YML026C_13_223828_222987_INTRON_48_448 intron 27.243162 106.047518 27.243162 79.804356 53.523759 1.728546607 -0.086044 8 72 SH21928 21928 copy of SH20403 43.517526 118.113079 80.8153025 1.907493603 -0.267059 8 73 SH7860 7860 snoRNA cluster1 intergenic 27.41061 105.878819 27.41061 79.468209 53.4394095 1.727861651 -0.070272 8 74 SH5997 5997 snR37 5' 29.979399 80.065186 55.0222925 1.740538681 0.09102 8 75 SH11186 11186 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2816 2834 27.197679 81.39972 54.2986995 1.734789428 -0.10901 8 76 SH3610 3610 Val1 tRNA 46 58 37.602785 92.169245 64.886015 1.812151103 0.11586 8 77 SH1391 1391 Leu1 tRNA-exon/intron 26 42 30.218619 98.25148 64.2350495 1.807772063 -0.200768 8 78 SH15096 15096 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 26.018296 94.512533 26.018296 69.494237 47.7562665 1.679030367 -0.039963 8 79 SH15136 15136 MT tRNA Phe 3' 26.171781 93.956566 26.171781 68.784785 47.478283 1.676495005 -0.018789 8 80 SH3127 3127 Ser4 tRNA 41 58 30.05944 93.913872 61.986656 1.792298208 -0.135335 8 81 SH14704 14704 MT tRNA thr2 tRNA 33.603585 113.367048 33.603585 80.763463 57.183524 1.757270916 0.247205 8 82 SH17118 17118 YHR010W_8_126513_127484_INTRON_32_592 intron 33.575646 126.781725 33.575646 94.206079 63.8908625 1.805438751 -0.025348 8 83 SH1356 1356 Ile3 3' flank 30.110147 90.314007 60.212077 1.779683608 -0.072615 8 84 SH4422 4422 telomerase RNA telomerase 1146 1167 26.520463 70.573151 48.546807 1.686160671 -0.017931 8 85 SH19085 19085 YOR293W_15_867094_867848_INTRON_53_489 intron 29.214537 109.411557 29.214537 81.19702 55.2057785 1.741984539 0.028271 8 86 SH9607 9607 RUF3 421-431 + 3' 421 29.421757 74.026062 51.7239095 1.713691343 0.134162 8 87 SH14965 14965 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 27.214767 106.749706 27.214767 80.534939 53.874853 1.731386098 -0.097133 8 88 SH9948 9948 RUF5-1 RUF5-1 546 562 31.808136 76.122764 53.96545 1.732115803 0.25314 8 89 SH13900 13900 MT COB intronic/exon3 26.51183 95.514383 26.51183 70.002553 48.2571915 1.683562043 -0.010768 8 90 SH6542 6542 snR46 3' 27.930229 77.04082 52.4855245 1.720039542 -0.003829 8 91 SH21593 21593 copy of SH6254 36.144288 72.849904 54.497096 1.736373361 0.504287 8 92 SH9999 9999 RUF5-1 3' 28.819963 82.71537 55.7676665 1.746382473 -0.0159 8 93 SH19083 19083 YOR293W_15_867094_867848_INTRON_53_489 intron 53.844972 177.593284 53.844972 124.748312 89.296642 1.950835128 -0.179134 8 94 SH8356 8356 snoRNA cluster4 3' 35.714174 113.807403 35.714174 79.093229 57.4037015 1.758939897 0.361063 8 95 SH16821 16821 YGL178W_7_167356_170575_INTRON_4_643 intron 35.083349 111.002567 35.083349 76.919218 56.0012835 1.748197981 0.380327 8 96 SH1883 1883 Leu9 3' flank 30.435885 77.665296 54.0505905 1.732800443 0.149963 8 97 SH4177 4177 telomerase RNA 5' 44.797191 104.991412 74.8943015 1.874448775 -0.00433 8 98 SH11569 11569 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4731 4748 7941.553893 6000.533333 6971.043613 3.8432978 -0.186808 8 99 SH18502 18502 YMR194W_13_651144_651909_INTRON_17_479 intron 25.175372 92.57308 25.175372 68.397708 46.78654 1.670120929 -0.087527 8 100 SH8101 8101 snoRNA cluster 3; 5' 70.22641 215.607277 70.22641 146.380867 108.3036385 2.034643047 -0.210814 8 101 SH15890 15890 YDL082W_4_308423_309387_INTRON_5_369 intron 27.570776 104.452515 27.570776 77.881739 52.7262575 1.722026946 -0.039104 8 102 SH12306 12306 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.382919 123.034767 34.382919 89.651848 62.0173835 1.792513439 0.095581 8 103 SH10230 10230 RUF6 RUF6 996 1015 45.021162 122.291411 83.6562865 1.922498582 -0.305981 8 104 SH20229 20229 YDR129C spliced 31.264469 83.179065 57.221767 1.757561265 0.105047 9 2 SH20337 20337 YER074W-A spliced 28.209486 78.034736 53.122111 1.725275325 0.002082 9 3 SH295 295 Arg4 71-72 + 3' flank 71 3' flank 28.197223 76.579602 52.3884125 1.719235238 0.020109 9 4 SH8653 8653 LSR1 / U2 RNA 5' 40.944803 92.188407 66.566605 1.823256408 0.186 9 5 SH3651 3651 Val2 5' flank - tRNA12 12 35.162682 81.478752 58.320717 1.765822855 0.294266 9 6 SH12912 12912 MT COX1 COX1ai2 27.305695 104.613897 27.305695 78.308202 52.8069485 1.722691072 -0.062775 9 7 SH15863 15863 YDL079C_4_314747_312950_INTRON_413_704 intron 1100.095454 2255.223867 1100.095454 1156.128413 1128.111934 3.052352193 -0.171268 9 8 SH9202 9202 snR7 U5 RNA 3' 29.229591 75.320137 52.274864 1.718292912 0.104464 9 9 SH982 982 Gly2 5' flank 28.385339 73.524372 50.9548555 1.707185574 0.0734 9 10 SH20202 20202 YDR025W spliced 129.230428 144.352822 136.791625 2.136059509 0.493579 9 11 SH19529 19529 CBP1 1.2 24.990575 68.789724 46.8901495 1.671081617 -0.107106 9 12 SH17350 17350 YIL018W_9_316766_317930_INTRON_5_404 intron 27.262109 106.157897 27.262109 79.895788 53.5789485 1.728994186 -0.08588 9 13 SH16563 16563 YER133W_5_432491_433954_INTRON_178_702 intron 62.679277 167.366879 62.679277 105.687602 84.1834395 1.925226666 0.286116 9 14 SH11394 11394 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3856 3869 41472.87595 14632.34202 28052.60898 4.447973258 0.560328 9 15 SH1163 1163 His1 tRNA 36 48 37.609004 96.262171 66.9355875 1.82565708 0.026891 9 16 SH18084 18084 YLR344W_12_819312_820142_INTRON_20_466 intron 69.301269 206.259747 69.301269 137.958478 103.6298735 2.015484968 -0.115806 9 17 SH1307 1307 Ile3 5' flank 28.550605 72.493071 50.521838 1.703479142 0.098363 9 18 SH13508 13508 MT COX1 intronic 31.761602 136.00803 31.761602 105.246428 68.504015 1.835716026 -0.29786 9 19 SH5668 5668 snR34 snR34 261 280 27.698771 77.440461 52.569616 1.720734805 -0.024689 9 20 SH10087 10087 RUF6 RUF6 281 298 30.35473 73.877106 52.115918 1.716970392 0.194998 9 21 SH3174 3174 Ser5 5' flank - tRNA8 8 27.757627 91.160702 59.4591645 1.774218802 -0.195933 9 22 SH92 92 Ala2 3' flank 28.286732 84.65572 56.471226 1.751827216 -0.074303 9 23 SH14367 14367 MT ORF9 and ORF10 (hypothetical) ORF9 / intergenic 26.693052 95.41057 26.693052 69.717518 48.205285 1.683094655 0.006266 9 24 SH8821 8821 LSR1 / U2 RNA U2 746 758 36.252945 91.696504 63.9747245 1.806008424 0.095055 9 25 SH14652 14652 MT 21S rRNA 21S rRNA4 27.932496 101.376147 27.932496 74.443651 51.1880735 1.709168785 0.030658 9 26 SH14645 14645 MT 21S rRNA intronic 29.891895 112.837008 29.891895 83.945113 56.918504 1.755253477 0.030777 9 27 SH14423 14423 MT 21S rRNA 21S rRNA3 28.637384 104.321441 28.637384 76.684057 52.6607205 1.721486797 0.047929 9 28 SH4457 4457 telomerase RNA 3' 30.223936 74.944363 52.5841495 1.720854854 0.172502 9 29 SH5262 5262 snR30 snR30 161 178 29.161877 89.50407 59.3329735 1.773296114 -0.101509 9 30 SH10553 10553 RUF8 RUF8 691 708 30.704444 71.313501 51.0089725 1.707646575 0.251942 9 31 SH19265 19265 YPL143W_16_282121_282969_INTRON_20_544 intron 25.990441 121.819253 25.990441 96.828812 61.4096265 1.788236456 -0.377291 9 32 SH14346 14346 MT VAR1 includes 5’ processing site 3' 48.58696 148.547684 48.58696 100.960724 74.773842 1.873749696 0.144676 9 33 SH17830 17830 YKR094C_11_618384_617630_INTRON_9_376 exon/intron 26.174294 106.499399 26.174294 81.325105 53.7496995 1.730376041 -0.180357 9 34 SH18878 18878 YNR053C_14_723108_721117_INTRON_811_1341 intron 26.397817 95.175654 26.397817 69.777837 48.087827 1.682035153 -0.015982 9 35 SH1130 1130 Gly4 3' flank 28.513374 83.507393 56.0103835 1.748268546 -0.045593 9 36 SH7580 7580 snR189 5' 28.204956 69.818585 49.0117705 1.690300391 0.110977 9 37 SH7023 7023 snR62 5' 30.421058 84.408222 57.41464 1.759022646 0.045752 9 38 SH7882 7882 snoRNA cluster1 snR73 26.38068 109.049338 26.38068 83.668658 55.024669 1.740557439 -0.194003 9 39 SH12845 12845 MT COX1 COX1ai1 26.764923 108.745666 26.764923 82.980743 54.872833 1.739357383 -0.158491 9 40 SH11237 11237 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3071 3087 8110.279902 8954.438138 8532.35902 3.931069121 -0.792946 9 41 SH1205 1205 Ile1 5' flank - tRNA3 3 28.354354 88.133364 58.243859 1.765250142 -0.115219 9 42 SH17763 17763 YKL157W_11_154993_158183_INTRON_282_664 intron 31.817979 120.664916 31.817979 89.846937 60.832458 1.784135365 0.009245 9 43 SH4488 4488 U3b (snR17b) 5' - 13 13 26.948364 78.235561 52.5919625 1.720919377 -0.086666 9 44 SH449 449 Asp1 66-71 + 3' flank 66 3' flank 27.076907 72.616694 49.8468005 1.697637288 -0.005334 9 45 SH12159 12159 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7681 7699 31.946793 97.290583 64.618688 1.810358136 -0.133276 9 46 SH7745 7745 snoRNA cluster1 intergenic 26.137504 94.704075 26.137504 69.566571 47.8520375 1.679900434 -0.032158 9 47 SH20994 20994 YML073C spliced 31.225156 92.7628 61.993978 1.792349505 -0.065334 9 48 SH21784 21784 copy of SH14439 29.059609 77.085083 53.072346 1.724868286 0.070284 9 49 SH11967 11967 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6721 6738 27145.53096 16692.36224 21918.9466 4.340819679 -0.201328 9 50 SH5571 5571 snR33 snR33 141 158 29.243074 65.590656 47.416865 1.675932837 0.240528 9 51 SH883 883 Glu3 5' flank 32.247505 98.877156 65.5623305 1.816654383 -0.158116 9 52 SH13026 13026 MT COX1 COX1ai2 27.858892 102.039237 27.858892 75.180345 51.5196185 1.711972638 0.015828 9 53 SH4039 4039 SRP RNA SRP RNA 86 102 30.151117 96.967505 63.559311 1.803179181 -0.180759 9 54 SH3698 3698 Val3 5' flank 29.66075 77.847474 53.754112 1.730411692 0.09901 9 55 SH12074 12074 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7256 7273 29.108444 83.14951 56.128977 1.749187127 -0.002375 9 56 SH6598 6598 snR47 96-99 + 3' 96 35.886007 94.918285 65.402146 1.815591999 0.016237 9 57 SH18065 18065 YLR344W_12_819312_820142_INTRON_20_466 intron 31.535316 130.289023 31.535316 99.753707 65.6445115 1.817198421 -0.195127 9 58 SH7461 7461 snR71 5' 29.407107 75.74743 52.5772685 1.72079802 0.110208 9 59 SH4794 4794 snR5 snR5 141 162 26.926122 71.132902 49.029512 1.690457571 0.003722 9 60 SH4062 4062 SRP RNA SRP RNA 201 218 40.283077 103.743274 72.0131755 1.857411962 -0.070971 9 61 SH19427 19427 YPR132W_16_794960_795762_INTRON_66_430 intron 28.275666 118.941606 28.275666 91.66594 59.970803 1.777939864 -0.179734 9 62 SH8526 8526 snR19 / U1 RNA U1 126 142 32.032558 80.885747 56.4591525 1.751734355 0.180782 9 63 SH21517 21517 copy of SH3112 24.87621 69.954421 47.4153155 1.675918645 -0.132742 9 64 SH11457 11457 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4171 4184 39.567924 101.230069 70.3989965 1.847566469 -0.035126 9 65 SH18648 18648 YNL112W_14_413636_416278_INTRON_1274_2275 intron 26.673392 102.514195 26.673392 76.840803 51.7570975 1.713969913 -0.088505 9 66 SH13231 13231 MT COX1 COX1-ai4 31.411884 123.374626 31.411884 92.962742 62.187313 1.793701792 -0.060685 9 67 SH6786 6786 snR50 3' 27.450168 65.828684 46.639426 1.668753197 0.115205 9 68 SH20643 20643 YHR203C spliced 45.676087 105.406813 75.54145 1.878185317 0.004314 9 69 SH15696 15696 YBR220C_2_663261_662457_INTRON_302_722 intron 28.552821 120.604727 28.552821 93.051906 60.8023635 1.783920461 -0.189894 9 70 SH7466 7466 snR71 5' 26.954331 77.007264 51.9807975 1.715842938 -0.070405 9 71 SH13783 13783 MT COB intronic 27.069492 100.947782 27.069492 74.87829 50.973891 1.707347786 -0.035291 9 72 SH2921 2921 Pro8 3' flank 27.040503 80.239674 53.6400885 1.729489486 -0.105559 9 73 SH4321 4321 telomerase RNA telomerase 641 660 27.246865 74.701743 50.974304 1.707351305 -0.020448 9 74 SH17066 17066 YGR214W_7_920570_921783_INTRON_91_545 intron 27.282951 101.940002 27.282951 75.657051 51.470001 1.711554177 -0.030093 9 75 SH6655 6655 snR48 101-113 + 3' 101 26.814854 72.778188 49.796521 1.697199002 -0.026194 9 76 SH12954 12954 MT COX1 COX1ai2 26.206035 94.326164 26.206035 69.120129 47.663082 1.678182121 -0.020937 9 77 SH16199 16199 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 32.597592 122.778266 32.597592 91.180674 61.889133 1.791614399 0.015669 9 78 SH7838 7838 snoRNA cluster1 snR74 28.39856 107.716308 28.39856 80.317748 54.358154 1.7352647 -0.014203 9 79 SH6261 6261 snR42 snR42 86 103 28.493277 76.246179 52.369728 1.719080318 0.044157 9 80 SH1082 1082 Gly3 3' flank 30.168995 104.66053 67.4147625 1.828755009 -0.330493 9 81 SH11716 11716 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5466 5481 47.164426 91.988483 69.5764545 1.842462294 0.307977 9 82 SH20254 20254 YDR381W spliced 27.340006 76.552977 51.9464915 1.71555622 -0.037712 9 83 SH21559 21559 copy of SH4989 27.720006 70.324113 49.0220595 1.690391553 0.070655 9 84 SH17819 17819 YKR057W_11_551293_551878_INTRON_25_346 intron 28.101876 114.714271 28.101876 87.612395 57.8571355 1.762356928 -0.121028 9 85 SH9164 9164 snR7 U5 RNA U5 91 107 30.633199 80.299338 55.4662685 1.74402895 0.128745 9 86 SH11323 11323 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3501 3518 52260.07136 19504.4475 35882.25943 4.554879782 0.408816 9 87 SH10893 10893 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1351 1370 26933.6878 14351.54067 20642.61423 4.314764697 0.027073 9 88 SH19660 19660 SIR1 2.2 55.01046 114.802708 84.906584 1.928941369 0.002077 9 89 SH11714 11714 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5456 5469 225.90169 147.655844 186.778767 2.271327504 1.119683 9 90 SH4597 4597 snR3 5' 35.96598 99.040575 67.5032775 1.82932486 -0.068553 9 91 SH12486 12486 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 27.921303 94.728903 27.921303 67.8076 47.8644515 1.680013087 0.119556 9 92 SH21712 21712 copy of SH11292 26.326095 71.690742 49.0084185 1.690270688 -0.047174 9 93 SH15173 15173 MT COX3 5' 69.64882 195.80964 69.64882 127.16082 98.40482 1.993016371 0.039862 9 94 SH15239 15239 MT tRNA fMet 5' 27.411842 87.638777 27.411842 61.226935 44.3193885 1.64659376 0.184104 9 95 SH11166 11166 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2716 2736 37.726622 67.055623 52.3911225 1.719257703 0.689845 9 96 SH1195 1195 Ile1 5' flank 49.960275 111.675988 80.8181315 1.907508805 -0.032102 9 97 SH10872 10872 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1246 1262 21329.38723 15169.82034 18249.60378 4.26125344 -0.365144 9 98 SH13552 13552 MT COX1 intronic 25.784622 95.667892 25.784622 70.88327 48.333946 1.684252253 -0.076328 9 99 SH14055 14055 MT COB Cytbi4 21.012451 80.86636 21.012451 60.853909 40.93318 1.612075485 -0.297085 9 100 SH6471 6471 snR45 3' 32.095423 79.448929 55.772176 1.746417589 0.211132 9 101 SH3844 3844 RNaseP RNaseP 186 201 38.456761 102.907152 70.6819565 1.849308562 -0.092453 9 102 SH18260 18260 YML056C_13_164176_162194_INTRON_461_868 intron 32.353547 115.461229 32.353547 84.107682 58.2306145 1.765151373 0.133702 9 103 SH14176 14176 MT COB intronic 33.022978 125.292851 33.022978 93.269873 63.1464255 1.800348772 -0.019253 9 104 SH10809 10809 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 931 948 28.538819 77.918856 53.2288375 1.726146981 0.025439 10 2 SH9572 9572 RUF3 RUF3 246 262 37.749218 94.236327 65.9927725 1.819496374 0.073824 10 3 SH20727 20727 YJL177W spliced 34.097936 93.30298 63.700458 1.804142555 0.007406 10 4 SH14477 14477 MT 21S rRNA 21S rRNA3 24.233061 95.11418 24.233061 71.881119 48.05709 1.681757469 -0.209258 10 5 SH7505 7505 snR71 3' 26.795301 78.556997 52.676149 1.721614017 -0.101503 10 6 SH15843 15843 YDL075W_4_322225_322987_INTRON_58_478 intron 27.012836 128.682459 27.012836 102.669623 64.8412295 1.811851241 -0.416259 10 7 SH4293 4293 telomerase RNA telomerase 501 519 26.969799 77.848358 52.4090785 1.719406524 -0.0802 10 8 SH20348 20348 YER102W spliced 33.299214 89.289114 61.294164 1.787419126 0.07644 10 9 SH9719 9719 RUF4 RUF4 371 387 26.442609 84.429863 55.436236 1.743793735 -0.198652 10 10 SH11018 11018 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1976 1994 74.503843 113.748192 94.1260175 1.973709684 0.315678 10 11 SH3339 3339 Thr3 tRNA 41 58 41.702907 101.465741 71.584324 1.854817928 0.003605 10 12 SH21221 21221 YOR182C spliced 29.492777 95.654651 62.573714 1.796391933 -0.189219 10 13 SH6964 6964 snR60 5' 32.400176 104.755445 68.5778105 1.836183615 -0.27135 10 14 SH15101 15101 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 27.675662 127.118834 27.675662 100.443172 64.059417 1.806582982 -0.349898 10 15 SH631 631 Gln2 5' flank 29.00958 125.411883 77.2107315 1.887677667 -0.732336 10 16 SH8628 8628 snR19 / U1 RNA U1 636 652 38.385523 70.241454 54.3134885 1.734907698 0.641214 10 17 SH13616 13616 MT ATP6 5' 28.142819 96.255411 28.142819 69.112592 48.6277055 1.686883778 0.116483 10 18 SH14169 14169 MT COB intronic 28.909418 109.492556 28.909418 81.583138 55.246278 1.742303024 0.003739 10 19 SH13762 13762 MT COB intronic 27.136891 86.70188 27.136891 60.564989 43.85094 1.641978907 0.176308 10 20 SH103 103 Ala2 3' flank 29.916451 78.532481 54.224466 1.734195284 0.106412 10 21 SH5006 5006 snR10 snR10 61 73 55.081874 95.468882 75.275378 1.876652945 0.36745 10 22 SH4116 4116 SRP RNA SRP RNA 471 490 27.712831 78.320858 53.0168445 1.724413875 -0.035051 10 23 SH16780 16780 YGL103W_7_310965_311925_INTRON_50_560 intron 34.312124 127.209672 34.312124 93.897548 64.104836 1.806890793 -0.000141 10 24 SH15420 15420 YBL059W_2_110555_111205_INTRON_287_355 3' exon 29.634741 116.194454 29.634741 87.559713 58.597227 1.767877064 -0.046004 10 25 SH8897 8897 LSR1 / U2 RNA U2 1126 1142 27.978393 71.569085 49.773739 1.697000266 0.071683 10 26 SH9653 9653 RUF4 RUF4 41 57 28.505665 93.271199 60.888432 1.78453479 -0.195748 10 27 SH14057 14057 MT COB Cytbi4 29.520265 111.683165 29.520265 83.1629 56.3415825 1.750829041 0.023934 10 28 SH2988 2988 Ser2 5' flank 27.509041 72.120911 49.814976 1.697359925 0.031732 10 29 SH8562 8562 snR19 / U1 RNA U1 306 321 31.066587 78.565778 54.8161825 1.738908787 0.177067 10 30 SH17742 17742 YKL156W_11_158616_159214_INTRON_4_353 3' exon 46.330758 164.224463 46.330758 118.893705 82.6122315 1.917044353 -0.224236 10 31 SH18253 18253 YML034W_13_209525_212155_INTRON_1921_2046 intron/exon 25.924759 93.861023 25.924759 68.936264 47.4305115 1.676057808 -0.039163 10 32 SH9894 9894 RUF5-1 RUF5-1 276 291 30.686114 86.188439 58.4372765 1.766689967 0.025076 10 33 SH2269 2269 Phe2 5' flank 26.647975 75.55379 51.1008825 1.7084284 -0.074133 10 34 SH13441 13441 MT COX1 intronic 26.821263 96.686216 26.821263 70.864953 48.843108 1.688803291 -0.000171 10 35 SH21589 21589 copy of SH6250 26.475081 66.991372 46.7332265 1.669625766 0.028751 10 36 SH19156 19156 YPL075W_16_412249_415357_INTRON_9_759 intron 30.569014 131.528951 30.569014 101.959937 66.2644755 1.821280765 -0.266149 10 37 SH4352 4352 telomerase RNA telomerase 796 817 28.587533 86.325664 57.4565985 1.759339912 -0.073931 10 38 SH6948 6948 snR58 3' 29.281025 79.07849 54.1797575 1.733837057 0.059024 10 39 SH1665 1665 Leu5 3' flank 27.371719 65.190602 46.2811605 1.66540424 0.11904 10 40 SH6546 6546 snR46 3' 27.145419 72.708824 49.9271215 1.698336528 -0.001684 10 41 SH3818 3818 RNaseP RNaseP 56 68 57.597858 113.570868 85.584363 1.932394423 0.066581 10 42 SH4996 4996 snR10 snR10 11 27 38.994974 98.634872 68.814923 1.837682628 0.006442 10 43 SH15800 15800 YDL061C_4_341182_340627_INTRON_1_408 intron 25.003933 102.592234 25.003933 78.588301 51.796117 1.714297203 -0.234554 10 44 SH11038 11038 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2076 2091 39.941335 98.619894 69.2806145 1.840611731 0.026484 10 45 SH3547 3547 Tyr2 tRNA 6 20 44.885368 99.219125 72.0522465 1.857647526 0.112051 10 46 SH16277 16277 YDR447C_4_1355542_1354818_INTRON_4_317 intron 25.953101 111.951447 25.953101 86.998346 56.4757235 1.751861803 -0.263864 10 47 SH4475 4475 U3b (snR17b) 5' 28.830476 94.958572 61.894524 1.791652227 -0.208319 10 48 SH616 616 Gln1 3' flank 28.967374 89.226928 59.097151 1.771566545 -0.105668 10 49 SH21187 21187 YOL047C spliced 31.367385 83.100944 57.2341645 1.757655347 0.110899 10 50 SH2313 2313 Phe2 3' flank 29.570469 92.807275 61.188872 1.786672447 -0.13895 10 51 SH10830 10830 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1036 1054 187.463415 225.620808 206.5421115 2.315008613 0.184782 10 52 SH2737 2737 Pro5 tRNA-intron/exon 66 78 97.230218 189.67021 143.450214 2.1567012 -0.307665 10 53 SH5397 5397 snR31 snR31 51 66 37.107963 90.368073 63.738018 1.804398555 0.144614 10 54 SH12626 12626 MT_15S MT_15S 27.063467 108.677764 27.063467 82.614297 54.838882 1.739088592 -0.133159 10 55 SH17555 17555 YJL189W_10_75932_76473_INTRON_7_392 intron 33.573278 126.043454 33.573278 93.470176 63.521727 1.802922297 -0.009483 10 56 SH18623 18623 YNL096C_14_444312_443395_INTRON_145_489 intron 29.073562 98.830416 29.073562 70.756854 49.915208 1.698232885 0.156581 10 57 SH657 657 Gln2 71-72 + 3' flank 71 3' flank 27.279595 72.939099 50.109347 1.699918743 0.004778 10 58 SH13901 13901 MT COB intronic/exon3 27.565291 112.944494 27.565291 86.379203 56.972247 1.755663348 -0.14316 10 59 SH15177 15177 MT COX3 5' / cox3 27.349244 93.913042 27.349244 67.563798 47.456521 1.676295897 0.083147 10 60 SH7308 7308 snR66 snR66 31 47 28.099102 80.759826 54.429464 1.735834058 -0.039673 10 61 SH18905 18905 YOL120C_15_94401_93394_INTRON_113_559 intron 26.72988 111.469818 26.72988 85.739938 56.234909 1.750005997 -0.193709 10 62 SH20086 20086 YCR097W spliced 26.606543 70.793225 48.699884 1.687527927 -0.014678 10 63 SH3855 3855 RNaseP RNaseP 241 253 108.690564 146.966888 127.828726 2.106628461 0.262439 10 64 SH224 224 Arg3 5' flank 25.748896 64.599885 45.1743905 1.654892302 0.01263 10 65 SH10497 10497 RUF8 RUF8 411 427 31.68277 80.808451 56.2456105 1.750088635 0.167565 10 66 SH16873 16873 YGL187C_7_150529_149708_INTRON_1_342 intron 24.798042 106.590268 24.798042 82.792226 53.795134 1.730742994 -0.300483 10 67 SH19844 19844 Negative Control 26.818334 74.350197 50.5842655 1.704015448 -0.046451 10 68 SH12430 12430 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.21861 97.035977 28.21861 69.817367 49.0179885 1.690355486 0.111926 10 69 SH17342 17342 YIL018W_9_316766_317930_INTRON_5_404 intron 25.777552 97.582923 25.777552 72.805371 49.2914615 1.692771695 -0.10253 10 70 SH13697 13697 MT ORF 5 (hypothetical) 3' 28.67773 121.226293 28.67773 93.548563 61.1131465 1.786134645 -0.192287 10 71 SH8445 8445 snoRNA cluster 5 snR128 37.945903 131.263768 37.945903 94.317865 66.131884 1.820410895 0.076316 10 72 SH2430 2430 Phe5 5' flank 26.547476 70.170179 48.3588275 1.684475762 -0.010476 10 73 SH4118 4118 SRP RNA SRP RNA 481 493 31.28911 87.605556 59.447333 1.774132376 0.025893 10 74 SH14171 14171 MT COB intronic 26.785027 95.988194 26.785027 70.203167 48.494097 1.685688877 0.006229 10 75 SH19741 19741 Negative Control 47.023122 115.40463 81.213876 1.909630238 -0.151647 10 76 SH12527 12527 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.275293 106.190764 28.275293 78.915471 53.595382 1.729127371 -0.004765 10 77 SH15201 15201 MT COX3 cox3 34.75124 125.168886 34.75124 91.417646 63.084443 1.799922273 0.065081 10 78 SH20429 20429 YGL033W spliced 32.664839 99.6616 66.1632195 1.82061663 -0.163172 10 79 SH15520 15520 YBR048W_2_332790_333771_INTRON_46_556 intron 26.211922 95.303235 26.211922 70.091313 48.1516175 1.68261088 -0.033893 10 80 SH2643 2643 Pro3 3' flank 30.584358 96.805154 63.694756 1.804103678 -0.16037 10 81 SH9063 9063 snR14 / U4 RNA 5' 25.977805 72.551774 49.2647895 1.692536631 -0.084278 10 82 SH15132 15132 MT tRNA Phe tRNA / 3' 25.858967 108.807451 25.858967 83.948484 54.9037255 1.739601815 -0.234981 10 83 SH1398 1398 Leu1 tRNA-intron/exon 61 76 38.953533 96.575769 67.764651 1.831003206 0.049082 10 84 SH18492 18492 YMR194W_13_651144_651909_INTRON_17_479 intron 34.002394 129.19553 34.002394 96.193136 65.097765 1.813566078 -0.056939 10 85 SH16982 16982 YGR034W_7_555923_556666_INTRON_20_496 3' exon 61.097285 192.477462 61.097285 132.380177 96.738731 1.985600386 -0.168484 10 86 SH7736 7736 snoRNA cluster1 intergenic 27.618274 101.13756 27.618274 74.519286 51.06878 1.708155483 0.007973 10 87 SH15376 15376 YBL027W_2_168385_169338_INTRON_3_386 intron 36.929784 125.035017 36.929784 89.105233 63.0175085 1.799461229 0.169077 10 88 SH1472 1472 Leu2 3' flank 27.646905 77.810252 52.7285785 1.722046063 -0.03299 10 89 SH17039 17039 YGR183C_7_859471_859058_INTRON_4_216 intron 31.614575 114.048573 31.614575 83.433998 57.5242865 1.759851241 0.115218 10 90 SH20834 20834 YKR095W-A spliced 31.298781 96.923319 64.11105 1.80693289 -0.143111 10 91 SH10603 10603 RUF8 941-951 + 3' 941 29.025812 67.00793 48.016871 1.681393856 0.205653 10 92 SH6781 6781 snR50 81-90 + 3' 81 26.542439 95.450401 60.99642 1.785304346 -0.326982 10 93 SH10770 10770 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 736 749 46.837451 111.294985 79.066218 1.897990966 -0.082941 10 94 SH9876 9876 RUF5-1 RUF5-1 186 203 24.646987 79.659875 52.153431 1.717282884 -0.27524 10 95 SH16531 16531 YER131W_5_423587_424307_INTRON_1_361 intron 26.226647 113.060999 26.226647 87.834352 57.0304995 1.756107175 -0.253683 10 96 SH1879 1879 Leu9 3' flank 19.373919 58.281089 38.827504 1.589139473 -0.394782 10 97 SH16792 16792 YGL103W_7_310965_311925_INTRON_50_560 intron 25.579072 98.844626 25.579072 74.265554 49.922313 1.698294699 -0.13647 10 98 SH3316 3316 Thr3 5' flank 23.817135 68.535371 46.176253 1.664418689 -0.193236 10 99 SH20427 20427 YGL033W spliced 47.084245 105.495842 76.2900435 1.882467863 0.028625 10 100 SH21786 21786 copy of SH14441 39.404632 112.554364 75.979498 1.88069642 -0.255346 10 101 SH10721 10721 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 491 512 34.429407 92.78443 63.6069185 1.803504356 0.026992 10 102 SH855 855 Glu2 tRNA 41 53 320.069683 467.214572 393.6421275 2.59510157 -0.33169 10 103 SH15320 15320 YAL003W_1_142172_143158_INTRON_81_446 intron 29.065946 107.083437 29.065946 79.017491 54.0417185 1.732729151 0.045905 10 104 SH9389 9389 RUF1 RUF1 521 542 22.10619 58.443467 40.2748285 1.6050337 -0.161912 11 2 SH448 448 Asp1 61-71 + 3' flank 61 3' flank 26.488874 88.903977 57.6964255 1.761148908 -0.247057 11 3 SH4903 4903 snR9 5' 23.009606 71.725392 47.367499 1.675480455 -0.303943 11 4 SH21033 21033 YMR125W spliced 342.366124 365.232656 353.79939 2.54875708 0.150951 11 5 SH11946 11946 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6616 6633 3014.337515 2208.891453 2611.614484 3.416909069 0.134289 11 6 SH19274 19274 YPL143W_16_282121_282969_INTRON_20_544 intron 26.185326 95.498813 26.185326 70.313487 48.2494065 1.683491976 -0.038885 11 7 SH1083 1083 Gly3 3' flank 40.795746 86.919365 63.8575555 1.80521229 0.304393 11 8 SH13354 13354 MT COX1 intronic 26.216379 107.142675 26.216379 81.926296 54.0713375 1.732967112 -0.184704 11 9 SH21326 21326 YPR028W spliced 26.184861 76.772744 51.4788025 1.711628436 -0.123253 11 10 SH10748 10748 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 626 642 59.78303 90.226454 75.004742 1.875088722 0.553116 11 11 SH8234 8234 snoRNA cluster 3; 3' 31.574768 98.988765 31.574768 68.413997 49.9943825 1.698921209 0.346165 11 12 SH6921 6921 snR58 5' 27.855464 62.411332 45.133398 1.654498032 0.194641 11 13 SH984 984 Gly2 5' flank 28.684027 75.931116 52.3075715 1.718564557 0.060875 11 14 SH10457 10457 RUF8 RUF8 211 230 29.333789 59.980482 44.6571355 1.649890862 0.332293 11 15 SH19147 19147 YPL075W_16_412249_415357_INTRON_9_759 intron 27.357256 107.001945 27.357256 80.644689 54.0009725 1.732401581 -0.088657 11 16 SH13321 13321 MT COX1 COX1-ai5a 29.667951 118.402391 29.667951 89.73444 59.7011955 1.775983028 -0.082458 11 17 SH17817 17817 YKR057W_11_551293_551878_INTRON_25_346 intron 30.036802 118.571485 30.036802 89.534683 59.7857425 1.776597627 -0.062473 11 18 SH17657 17657 YKL002W_11_437416_438182_INTRON_61_128 exon/intron 30.34764 110.968259 30.34764 81.620619 55.9841295 1.74806493 0.09447 11 19 SH12249 12249 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.551551 130.556404 30.551551 101.004853 65.778202 1.818081998 -0.247526 11 20 SH8596 8596 snR19 / U1 RNA U1 476 493 28.792219 75.7628 52.2775095 1.71831489 0.07019 11 21 SH13958 13958 MT COB Cytbi3 27.229932 97.020313 27.229932 70.790381 49.0101565 1.690286089 0.029962 11 22 SH17410 17410 YIL106W_9_166412_167441_INTRON_21_105 exon/intron 25.153939 99.376494 25.153939 75.222555 50.188247 1.700602027 -0.181033 11 23 SH2262 2262 Phe2 5' flank 27.091696 74.599577 50.8456365 1.706253688 -0.030133 11 24 SH17423 17423 YIL111W_9_155219_155762_INTRON_2_89 intron 114.242321 256.346232 114.242321 143.103911 128.673116 2.109487818 0.365632 11 25 SH15344 15344 YBL018C_2_186436_185960_INTRON_48_122 5' exon 27.521099 103.829958 27.521099 77.308859 52.414979 1.719455416 -0.035111 11 26 SH3773 3773 Val4 3' flank 29.215472 79.462789 54.3391305 1.735112685 0.049947 11 27 SH10430 10430 RUF8 RUF8 76 93 27.910476 83.262116 55.586296 1.744967736 -0.082915 11 28 SH9952 9952 RUF5-1 RUF5-1 566 582 36.72625 105.007813 70.8670315 1.850444241 -0.172016 11 29 SH4889 4889 snR8 3' 28.834944 70.333227 49.5840855 1.695342308 0.146472 11 30 SH6176 6176 snR40 5' 28.398902 78.774847 53.5868745 1.729058427 0.00524 11 31 SH12539 12539 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.446824 121.57237 28.446824 94.125546 61.286185 1.787362588 -0.212619 11 32 SH664 664 Gln2 3' flank 28.844402 84.443547 56.6439745 1.753153719 -0.035006 11 33 SH3920 3920 RNase MRP RNaseMRP 16 33 64.944638 126.510357 95.7274975 1.981036706 -0.022019 11 34 SH21259 21259 YPL079W spliced 36.063263 97.858131 66.960697 1.825819966 -0.041556 11 35 SH3416 3416 Trp1 5' flank 28.28939 84.64076 56.465075 1.751779909 -0.073949 11 36 SH11168 11168 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2726 2743 38.881264 95.850353 67.3658085 1.828439526 0.063106 11 37 SH18588 18588 YNL050C_14_534978_534075_INTRON_18_108 intron 28.200683 106.738619 28.200683 79.537936 53.8693095 1.731341409 -0.017609 11 38 SH4115 4115 SRP RNA SRP RNA 466 483 29.115762 87.918501 58.5171315 1.767283029 -0.075977 11 39 SH4251 4251 telomerase RNA telomerase 291 309 29.539973 76.667147 53.10356 1.725123637 0.106618 11 40 SH6640 6640 snR48 snR48 26 45 29.353407 75.884135 52.618771 1.7211407 0.104959 11 41 SH20650 20650 YIL004C spliced 28.785041 79.920593 54.352817 1.735222058 0.016229 11 42 SH21860 21860 copy of SH18010 25.862614 67.753057 46.8078355 1.670318559 -0.027172 11 43 SH9393 9393 RUF1 541-550 + 3' 541 91.163579 170.650485 130.907032 2.116962976 -0.198707 11 44 SH12358 12358 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.229325 104.695442 27.229325 78.466117 52.847721 1.723026264 -0.070069 11 45 SH5212 5212 snR30 5' 27.418386 66.694795 47.0565905 1.672620457 0.100431 11 46 SH14197 14197 MT COB Exon6 28.000979 96.83925 28.000979 69.838271 48.919625 1.689483119 0.096729 11 47 SH15833 15833 YDL075W_4_322225_322987_INTRON_58_478 intron 26.260182 92.468224 26.260182 67.208042 46.734112 1.669633995 0.009957 11 48 SH18435 18435 YMR142C_13_551206_550205_INTRON_5_406 intron 28.715123 119.191941 28.715123 91.476818 60.0959705 1.778845353 -0.155898 11 49 SH12933 12933 MT COX1 COX1ai2 40.742917 138.593011 40.742917 98.850094 69.7965055 1.843833679 0.038023 11 50 SH13953 13953 MT COB Cytbi3 27.544135 104.133525 27.544135 77.58939 52.5667625 1.72071123 -0.037161 11 51 SH17547 17547 YJL177W_10_90783_91654_INTRON_310_626 intron 28.225189 95.46393 28.225189 68.238741 48.231965 1.683334956 0.134321 11 52 SH4090 4090 SRP RNA SRP RNA 341 355 100.662636 149.02191 124.842273 2.096361667 0.150971 11 53 SH10070 10070 RUF6 RUF6 196 215 30.192184 99.81843 65.005307 1.812948814 -0.233646 11 54 SH634 634 Gln2 5' flank 27.294559 79.980814 53.6376865 1.729470038 -0.084704 11 55 SH20732 20732 YJL189W spliced 38.580846 107.494946 73.037896 1.863548254 -0.179768 11 56 SH3999 3999 RNase MRP 3' 31.733107 90.751818 61.2424625 1.787052645 -0.009832 11 57 SH11065 11065 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2211 2228 17147.53939 9635.898553 13391.71897 4.126836327 0.067219 11 58 SH19109 19109 YOR312C_15_901173_900242_INTRON_2_427 intron 30.114192 116.292666 30.114192 87.178474 58.646333 1.768240862 -0.017773 11 59 SH12436 12436 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.797715 106.043373 29.797715 77.245658 53.5216865 1.72852979 0.11546 11 60 SH11138 11138 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2576 2591 25114.49669 14372.88894 19743.69282 4.295428385 -0.066601 11 61 SH1525 1525 Leu3 tRNA 96 112 36.623642 85.927507 61.2755745 1.787287392 0.235704 11 62 SH1191 1191 Ile1 5' flank 27.500315 91.445554 59.4729345 1.774319368 -0.213224 11 63 SH3291 3291 Thr2 tRNA 56 70 32.185688 92.497637 62.3416625 1.79477838 -0.024321 11 64 SH17761 17761 YKL157W_11_154993_158183_INTRON_282_664 intron 26.749332 96.849215 26.749332 71.099883 48.9246075 1.68952735 -0.008518 11 65 SH16281 16281 YDR447C_4_1355542_1354818_INTRON_4_317 intron 51.020982 162.266052 51.020982 112.24507 81.633026 1.911865895 -0.023465 11 66 SH13582 13582 MT COX1 Exon 6 39.826825 143.703896 39.826825 104.877071 72.351948 1.859450229 -0.102763 11 67 SH21745 21745 copy of SH12760 37.236313 100.913207 69.07476 1.839319385 -0.078629 11 68 SH4741 4741 snR4 3' 37.777594 90.579931 64.1787625 1.807391339 0.155145 11 69 SH9732 9732 RUF4 RUF4 436 452 36.625748 78.039909 57.3328285 1.758403368 0.415536 11 70 SH10261 10261 RUF7 5' 28.497742 80.361695 54.4297185 1.735836088 -0.008182 11 71 SH1408 1408 Leu1 111-115 + 3' flank 111 26.42209 72.249069 49.3355795 1.693160234 -0.047609 11 72 SH14693 14693 MT 21S rRNA 3' 49.356404 142.678663 49.356404 94.322259 71.8393315 1.856362282 0.296096 11 73 SH12147 12147 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7621 7637 33.430398 105.141613 69.2860055 1.840645524 -0.252068 11 74 SH18937 18937 YOL121C_15_92849_92025_INTRON_21_410 intron 26.771571 97.997211 26.771571 72.22564 49.4986055 1.694592964 -0.021992 11 75 SH4366 4366 telomerase RNA telomerase 866 883 33.365621 99.155697 66.260659 1.821255751 -0.134695 11 76 SH2698 2698 Pro4 3' flank 26.295228 72.39359 49.344409 1.693237952 -0.058795 11 77 SH2198 2198 Met2 3' flank 28.154615 68.026311 48.090463 1.682058958 0.132492 11 78 SH20611 20611 YHR079C-A spliced 34.540846 104.610198 69.575522 1.842456473 -0.214667 11 79 SH2142 2142 Met1 3' flank 25.861475 62.284515 44.072995 1.644172564 0.057877 11 80 SH4434 4434 telomerase RNA telomerase 1206 1220 28.321356 83.436203 55.8787795 1.747246912 -0.05747 11 81 SH14321 14321 MT VAR1 includes 5’ processing site VAR1 26.338814 96.202292 26.338814 70.863478 48.601146 1.68664651 -0.035106 11 82 SH17650 17650 YJR145C_10_702761_701720_INTRON_15_270 intron 26.337327 105.100931 26.337327 79.763604 53.0504655 1.724689199 -0.149246 11 83 SH969 969 Gly1 3' flank 26.91035 71.083238 48.996794 1.690167664 0.003264 11 84 SH12475 12475 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 14308.77758 23280.99301 14308.77758 8973.215428 11640.9965 4.065990159 -0.056173 11 85 SH8166 8166 snoRNA cluster 3; snR70 41.569495 142.420688 41.569495 101.851193 71.710344 1.855581806 -0.006832 11 86 SH20502 20502 YGR001C spliced 29.813721 79.686392 54.7500565 1.738384572 0.085326 11 87 SH14847 14847 MT tRNA Asp 3' 26.797095 92.307596 26.797095 66.510501 46.653798 1.668887005 0.058946 11 88 SH19841 19841 Negative Control 32.066349 91.073938 61.5701435 1.789370166 -0.001331 11 89 SH17744 17744 YKL157W_11_154993_158183_INTRON_282_664 5' exon 31.667789 122.963304 31.667789 92.295515 61.981652 1.792263147 -0.038682 11 90 SH6824 6824 snR52 snR52 26 45 29.482794 83.958433 56.7206135 1.75374092 0.012009 11 91 SH9229 9229 snR6 / U6 RNA U6 16 31 33.97723 157.051148 95.514189 1.980067892 -1.055738 11 92 SH2422 2422 Phe4 3' flank 33.73314 100.852688 67.292914 1.827969335 -0.159791 11 93 SH19711 19711 Negative Control 27.773099 78.050378 52.9117385 1.723552031 -0.027494 11 94 SH2924 2924 Pro8 3' flank 25.696433 84.055947 54.87619 1.739383951 -0.248142 11 95 SH18360 18360 YMR033W_13_337787_339276_INTRON_31_116 intron/exon 25.085417 108.082981 25.085417 83.997564 54.5414905 1.736727002 -0.29279 11 96 SH9580 9580 RUF3 RUF3 286 298 22.110844 72.764871 47.4378575 1.676125066 -0.393039 11 97 SH10633 10633 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 51 68 25.841519 79.379768 52.6106435 1.721073614 -0.180716 11 98 SH15216 15216 MT COX3 cox3 29.642825 114.340001 29.642825 85.697176 57.6700005 1.760949955 -0.012377 11 99 SH17272 17272 YHR123W_8_354817_356083_INTRON_51_141 intron/exon 44.691575 157.679957 44.691575 113.988382 79.3399785 1.899492078 -0.172466 11 100 SH1711 1711 Leu6 3' flank 35.92447 108.66851 72.29649 1.859117213 -0.260858 11 101 SH8155 8155 snoRNA cluster 3; intergenic/snR70 57.619536 228.367933 57.619536 171.748397 114.6839665 2.059502705 -0.712105 11 102 SH1283 1283 Ile2 tRNA 111 123 55.734808 150.230648 102.982728 2.012764392 -0.499084 11 103 SH18306 18306 YML073C_13_124172_123227_INTRON_16_430 intron 30.92518 120.955871 30.92518 91.030691 60.9779355 1.785172717 -0.049096 11 104 SH10584 10584 RUF8 RUF8 846 863 34.625262 88.708444 61.666853 1.790051786 0.123066 12 2 SH5931 5931 snR36 snR36 111 123 50.591978 102.939515 76.7657465 1.885167478 0.14141 12 3 SH14699 14699 MT tRNA thr2 5' 21.890906 83.671642 21.890906 62.780736 42.335821 1.626707986 -0.25741 12 4 SH9053 9053 snR17a / U3a 3' 27.298655 69.574739 48.436697 1.68517452 0.051437 12 5 SH4687 4687 snR4 5' 27.73039 72.835377 50.2828835 1.701420175 0.037707 12 6 SH9641 9641 RUF4 5' 38.776349 102.788676 70.7825125 1.849925974 -0.083268 12 7 SH20413 20413 YFR032C-A spliced 32.452931 88.384003 60.418467 1.781169702 0.061087 12 8 SH6257 6257 snR42 snR42 66 85 25.673312 67.771441 46.7223765 1.669524925 -0.041571 12 9 SH12286 12286 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 40.504221 144.445626 40.504221 104.941405 72.722813 1.86167067 -0.089706 12 10 SH10514 10514 RUF8 RUF8 496 519 23.822068 73.737497 48.7797825 1.68823986 -0.266667 12 11 SH1154 1154 His1 5' flank - tRNA8 8 32.325355 85.701114 59.0132345 1.770949419 0.103501 12 12 SH20843 20843 YLL050C spliced 43.74137 95.138587 69.4399785 1.841609578 0.175386 12 13 SH18829 18829 YNL302C_14_62942_61957_INTRON_21_571 intron 29.424759 120.446796 29.424759 92.022037 60.723398 1.783356066 -0.132417 12 14 SH5637 5637 snR34 snR34 106 122 29.932887 96.957378 63.4451325 1.802398309 -0.19032 12 15 SH9147 9147 snR7 U5 RNA U5 6 23 32.269462 100.756466 66.512964 1.822906302 -0.195768 12 16 SH20362 20362 YER131W spliced 60.085091 127.760917 93.923004 1.972771974 -0.117853 12 17 SH5880 5880 snR35 3' 34.516784 125.501826 80.009305 1.903140498 -0.589707 12 18 SH3220 3220 Thr1 5' flank 25.484283 73.39565 49.4399665 1.694078168 -0.132313 12 19 SH6712 6712 snR49 snR49 86 103 45.220092 101.96772 73.593906 1.866841854 0.062995 12 20 SH3195 3195 Ser5 3' flank 34.374708 99.831952 67.10333 1.826744073 -0.12303 12 21 SH19828 19828 Negative Control 28.536331 81.618023 55.077177 1.740971672 -0.021163 12 22 SH18037 18037 YLR333C_12_796335_795573_INTRON_1_423 5' exon 62.524021 183.575218 62.524021 122.051197 92.287609 1.965143394 0.008179 12 23 SH15483 15483 YBL092W_2_45639_46364_INTRON_1_333 exon/intron 31.089506 124.013711 31.089506 93.924205 62.5068555 1.795927652 -0.090409 12 24 SH15873 15873 YDL082W_4_308423_309387_INTRON_5_369 5' exon 47.329728 159.632413 47.329728 113.302685 80.3162065 1.904803188 -0.109222 12 25 SH21662 21662 copy of SH9192 26.891784 65.354126 46.122955 1.663917124 0.08257 12 26 SH5227 5227 snR30 5' - 7 -14 7 34.586964 105.12955 69.858257 1.844217746 -0.223784 12 27 SH5778 5778 snR35 snR35 76 98 29.869214 75.284743 52.5769785 1.720795624 0.14572 12 28 SH15743 15743 YCR028C-A_3_173432_172942_INTRON_243_325 intron/exon 27.110094 101.429174 27.110094 75.31908 51.214587 1.709393675 -0.038037 12 29 SH8859 8859 LSR1 / U2 RNA U2 936 952 87.411115 153.945483 120.678299 2.08162918 -0.064177 12 30 SH14078 14078 MT COB Cytbi4 26.480108 99.298864 26.480108 73.818756 50.149432 1.700266018 -0.064009 12 31 SH3878 3878 RNaseP RNaseP 356 368 38.101607 88.647446 63.3745265 1.801914728 0.206237 12 32 SH10990 10990 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1836 1853 3820.454567 2644.136756 3232.295662 3.509511079 0.158363 12 33 SH9845 9845 RUF5-1 RUF5-1 31 52 29.351751 88.505392 58.9285715 1.770325913 -0.075464 12 34 SH12904 12904 MT COX1 COX1ai2 26.713436 98.905874 26.713436 73.192438 49.952937 1.698561028 -0.038938 12 35 SH6816 6816 snR52 5' - 5 -14 5 27.933397 86.101355 57.017376 1.756007227 -0.11494 12 36 SH8291 8291 snoRNA cluster4 intergenic 40.427872 147.684685 40.427872 108.256813 74.3423425 1.871236241 -0.154412 12 37 SH11047 11047 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2121 2138 20569.88073 12216.28236 16393.08155 4.214660599 -0.070352 12 38 SH13941 13941 MT COB Cytbi3 28.552109 93.659582 28.552109 66.107473 47.329791 1.675134587 0.186947 12 39 SH9967 9967 RUF5-1 RUF5-1 641 657 29.009988 96.314269 62.6621285 1.797005143 -0.221941 12 40 SH5758 5758 snR35 5' 38.333483 80.125857 59.22967 1.772539313 0.416659 12 41 SH814 814 Glu1 3' flank 28.856704 76.644599 52.7506515 1.722227828 0.062819 12 42 SH10116 10116 RUF6 RUF6 426 447 35.086332 116.483637 75.7849845 1.879583166 -0.423528 12 43 SH4482 4482 U3b (snR17b) 5' 27.809503 70.72318 49.2663415 1.692550313 0.071432 12 44 SH21859 21859 copy of SH18009 29.826839 101.722931 65.774885 1.818060097 -0.282431 12 45 SH3684 3684 Val3 5' flank 32.099107 84.943626 58.5213665 1.767314459 0.107835 12 46 SH11907 11907 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6421 6439 15838.41913 10583.67087 13211.045 4.120937172 -0.184692 12 47 SH318 318 Arg5 5' flank 39.354669 100.627488 69.9910785 1.845042686 -0.027258 12 48 SH5895 5895 snR36 5' 28.588922 79.261367 53.9251445 1.731791318 0.011641 12 49 SH12799 12799 MT COX1 COX1ai1 31.62824 130.388799 31.62824 99.760559 65.6943995 1.817528347 -0.192751 12 50 SH7102 7102 snR63 snR63 16 33 27.851606 71.659375 49.7554905 1.696841012 0.061727 12 51 SH14789 14789 "MT tRNAs (Lys, Arg1, Gly)" 5' 28.474369 101.395862 28.474369 73.921493 51.197931 1.709252411 0.073908 12 52 SH7353 7353 snR68 5' - 7 -14 7 28.51812 68.810246 48.664183 1.687209437 0.146202 12 53 SH12704 12704 MT ORF 8 (hypothetical) ORF8 28.158579 97.074006 28.158579 69.915427 49.037003 1.690523919 0.106478 12 54 SH9295 9295 RUF1 RUF1 51 68 30.1295 81.281935 55.7057175 1.745899772 0.085329 12 55 SH2669 2669 Pro4 tRNA 11 28 29.862924 71.810089 50.8365065 1.706175698 0.192633 12 56 SH18181 18181 YLR448W_12_1028848_1029762_INTRON_16_399 intron 27.56336 111.560026 27.56336 84.996666 56.280013 1.750354189 -0.127138 12 57 SH16804 16804 YGL137W_7_249872_252741_INTRON_19_218 intron 27.723754 107.644031 27.723754 80.920277 54.3220155 1.734975875 -0.066998 12 58 SH2032 2032 Lys3 3' flank 27.603327 63.515517 45.559422 1.658578206 0.160246 12 59 SH21329 21329 YPR043W spliced 34.226757 93.406319 63.816538 1.80493324 0.008382 12 60 SH1348 1348 Ile3 tRNA 121 133 56.465012 121.570767 89.0178895 1.949477294 -0.084085 12 61 SH15572 15572 YBR084C-A_2_415219_414144_INTRON_3_508 intron 27.15598 112.874465 27.15598 86.718485 56.9372325 1.755396354 -0.175273 12 62 SH4358 4358 telomerase RNA telomerase 826 844 27.664067 73.498847 50.581457 1.703991335 0.024394 12 63 SH3508 3508 Tyr1 81-89 + 3' flank 81 27.649679 69.643163 48.646421 1.687050894 0.075099 12 64 SH15108 15108 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 26.889905 112.76019 26.889905 86.870285 56.880095 1.754960313 -0.195576 12 65 SH13713 13713 MT tRNAGlu (and 5' processing site for COB) 3' 25.871514 97.82589 25.871514 72.954376 49.412945 1.693840739 -0.097484 12 66 SH20848 20848 YLR048W spliced 36.235425 99.622527 67.928976 1.832055068 -0.074496 12 67 SH20952 20952 YML024W spliced 85.130661 149.908692 117.5196765 2.070110587 -0.045974 12 68 SH8635 8635 snR19 / U1 RNA 3' 25.762623 81.364022 53.5633225 1.728867508 -0.210706 12 69 SH21370 21370 Leu1_5 spliced 33.083604 103.874619 68.4791115 1.835558117 -0.236362 12 70 SH5386 5386 snR31 5' - 15 -4 15 31.435094 103.099585 67.2673395 1.827804251 -0.264841 12 71 SH13300 13300 MT COX1 COX1-ai5a 27.06247 123.272371 27.06247 97.209901 62.1361855 1.793344589 -0.32927 12 72 SH18564 18564 YMR292W_13_854795_855293_INTRON_23_104 3' exon 29.359355 109.278417 29.359355 80.919062 55.1392085 1.741460528 0.041021 12 73 SH13817 13817 MT COB Cytbi2 27.251274 94.674467 27.251274 68.423193 47.8372335 1.679766056 0.064107 12 74 SH18664 18664 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.385548 108.481249 27.385548 82.095701 54.7406245 1.738309748 -0.104564 12 75 SH19359 19359 YPL249C-A_16_76239_75699_INTRON_17_254 3' exon 31.81159 137.82576 31.81159 107.01417 69.41288 1.841440064 -0.33034 12 76 SH4424 4424 telomerase RNA telomerase 1156 1177 29.041989 75.171341 52.106665 1.716893278 0.094311 12 77 SH12277 12277 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.323267 116.895327 28.323267 89.57206 58.9476635 1.770466596 -0.141737 12 78 SH13464 13464 MT COX1 intronic 29.857362 116.215067 29.857362 87.357705 58.6075335 1.767953444 -0.032414 12 79 SH4329 4329 telomerase RNA telomerase 681 698 36.331455 104.643796 70.4876255 1.848112881 -0.173746 12 80 SH18118 18118 YLR388W_12_898158_898821_INTRON_1_488 5' exon 32.299471 125.315087 32.299471 94.015616 63.1575435 1.80042523 -0.054359 12 81 SH18686 18686 YNL112W_14_413636_416278_INTRON_1274_2275 intron 35.116883 134.83567 35.116883 100.718787 67.917835 1.831983834 -0.122867 12 82 SH7533 7533 snR79 snR79 6 24 57.463046 107.239191 82.3511185 1.915669502 0.175445 12 83 SH11988 11988 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S/3'ETS 6826 6848 28.279638 71.134842 49.70724 1.69641965 0.098148 12 84 SH3108 3108 Ser4 5' flank 32.223627 97.455516 64.8395715 1.811840136 -0.12934 12 85 SH15707 15707 YBR220C_2_663261_662457_INTRON_302_722 intron 29.982362 109.936094 29.982362 80.953732 55.468047 1.744042875 0.080156 12 86 SH567 567 Cys1 3' flank 28.176692 73.567313 50.8720025 1.706478833 0.05886 12 87 SH38 38 Ala1 3' flank 30.380095 91.111307 60.745701 1.783515548 -0.074266 12 88 SH273 273 Arg4 5' flank 25.481267 74.600415 50.040841 1.6993246 -0.148165 12 89 SH19033 19033 YOR234C_15_779404_778554_INTRON_20_546 exon/intron 27.381617 101.747689 27.381617 75.366072 51.3738445 1.710742067 -0.019443 12 90 SH20414 20414 YGL030W spliced 32.194737 93.880008 63.0373725 1.799598103 -0.054204 12 91 SH6610 6610 snR47 3' 26.088123 63.295942 44.6920325 1.650230106 0.057817 12 92 SH14138 14138 MT COB intronic 25.920294 94.636151 25.920294 69.715857 47.8180755 1.679592093 -0.050286 12 93 SH21359 21359 Ile2_3 spliced 31.665814 119.563627 75.6147205 1.878606351 -0.561752 12 94 SH16971 16971 YGR034W_7_555923_556666_INTRON_20_496 intron 25.918863 92.717218 25.918863 67.798355 46.858609 1.670789392 -0.023629 12 95 SH953 953 Gly1 tRNA 16 33 22.886782 81.298938 52.09286 1.716778202 -0.437477 12 96 SH14279 14279 MT VAR1 includes 5’ processing site VAR1 34.356421 118.614976 34.356421 85.258555 59.807488 1.776755562 0.19307 12 97 SH11713 11713 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5451 5466 38.843351 86.277269 62.56031 1.796298892 0.27775 12 98 SH8419 8419 snoRNA cluster 5 snR190 28.745102 108.225659 28.745102 80.480557 54.6128295 1.737294678 0.006623 12 99 SH15587 15587 YBR084C-A_2_415219_414144_INTRON_3_508 intron 26.771142 100.311894 26.771142 74.540752 50.655947 1.704630439 -0.052299 12 100 SH8719 8719 LSR1 / U2 RNA U2 236 255 46.873613 130.38749 88.6305515 1.947583452 -0.396318 12 101 SH8193 8193 snoRNA cluster 3; intergenic 45.081167 162.782316 45.081167 118.701149 81.891158 1.913237012 -0.245426 12 102 SH698 698 Gln3 tRNA 21 38 38.04351 110.068321 74.0559155 1.869559755 -0.240104 12 103 SH8912 8912 LSR1 / U2 RNA 3' 35.345873 86.770955 61.058414 1.785745519 0.185515 12 104 SH15054 15054 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 73.232539 245.316708 73.232539 173.084169 123.158354 2.090463876 -0.468249 13 2 SH9714 9714 RUF4 RUF4 346 365 45.174384 96.225507 70.6999455 1.849419079 0.179692 13 3 SH3067 3067 Ser3 tRNA 31 49 45.070151 108.98468 77.0274155 1.886645326 -0.074837 13 4 SH7681 7681 snoRNA cluster1 intergenic 111.806112 303.527514 111.806112 192.721402 152.263757 2.182596541 -0.170506 13 5 SH8398 8398 snoRNA cluster 5 snR190 27.269422 97.434804 27.269422 71.165382 49.217402 1.692118685 0.027683 13 6 SH20768 20768 YKL002W spliced 35.394531 95.484893 65.439712 1.815841379 -0.007636 13 7 SH12934 12934 MT COX1 COX1ai2 31.339287 115.81824 31.339287 85.478953 58.40912 1.766480663 0.066053 13 8 SH3128 3128 Ser4 tRNA 46 63 27.611148 83.158626 55.384887 1.743391274 -0.101985 13 9 SH21177 21177 YNR053C spliced 33.083572 91.456955 62.2702635 1.794280703 0.022173 13 10 SH10444 10444 RUF8 RUF8 146 162 38.988934 86.559927 62.7744305 1.797782781 0.274305 13 11 SH3678 3678 Val2 3' flank 24.799803 75.520924 50.1603635 1.700360675 -0.212137 13 12 SH14257 14257 MT VAR1 includes 5’ processing site 5' 25.411038 99.357093 25.411038 74.946055 50.1785465 1.700518077 -0.157915 13 13 SH15828 15828 YDL075W_4_322225_322987_INTRON_58_478 5' exon 27.994812 107.280822 27.994812 80.28601 54.140411 1.733521548 -0.040787 13 14 SH12503 12503 MT_tRNA Pro 3' 28.136749 102.779219 28.136749 75.64247 51.8896095 1.715080402 0.028391 13 15 SH17998 17998 YLR287C-A_12_713158_712537_INTRON_4_433 intron 28.106945 107.553649 28.106945 80.446704 54.2768245 1.734614431 -0.035257 13 16 SH4256 4256 telomerase RNA telomerase 316 333 28.105175 81.847492 54.9763335 1.740175772 -0.05266 13 17 SH18490 18490 YMR194W_13_651144_651909_INTRON_17_479 intron 28.054359 108.919016 28.054359 81.864657 54.959508 1.740042836 -0.056279 13 18 SH19020 19020 YOR182C_15_678792_678190_INTRON_4_414 intron 286.913985 610.992345 286.913985 325.07836 305.9961725 2.485715994 0.11495 13 19 SH9400 9400 RUF1 3' 25.336408 75.233614 50.285011 1.701438549 -0.167254 13 20 SH19861 19861 Negative Control 34.19645 94.023821 64.1101355 1.806926695 -0.005756 13 21 SH4845 4845 snR8 snR8 6 24 34.951324 82.34694 58.649132 1.768261589 0.2698 13 22 SH20985 20985 YML067C spliced 28.746743 78.24458 53.4956615 1.728318562 0.03494 13 23 SH899 899 Glu3 tRNA 6 23 6202.208233 3876.723917 5039.466075 3.702384526 0.183043 13 24 SH17389 17389 YIL069C_9_232366_231550_INTRON_4_412 intron 30.654248 115.680775 30.654248 86.026527 58.3403875 1.765969309 0.026594 13 25 SH6684 6684 snR49 5' 26.537619 72.071852 49.3047355 1.692888633 -0.03685 13 26 SH5532 5532 snR33 5' 27.041307 76.7576 51.8994535 1.715162785 -0.061083 13 27 SH12473 12473 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 517.54214 1118.652711 517.54214 602.110571 559.8263555 2.74805334 -0.124725 13 28 SH11915 11915 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6461 6478 12909.03446 8644.024297 10776.52938 4.032478917 -0.131301 13 29 SH4069 4069 SRP RNA SRP RNA 236 250 28.722177 92.443033 60.582605 1.782347944 -0.171823 13 30 SH21425 21425 Trp1 spliced 148.892077 276.297469 212.594773 2.327552582 -0.433806 13 31 SH14348 14348 MT VAR1 includes 5’ processing site 3' 26.26403 102.315865 26.26403 77.051835 51.6579325 1.71313702 -0.120921 13 32 SH19117 19117 YPL031C_16_493033_492014_INTRON_18_119 intron 26.425149 91.606823 26.425149 66.181674 46.3034115 1.66561299 0.036785 13 33 SH5703 5703 snR34 snR34 436 455 26.747811 76.128646 51.4382285 1.711286003 -0.074204 13 34 SH16328 16328 YDR471W_4_1401759_1402553_INTRON_32_415 intron 26.694766 96.396916 26.694766 70.70215 48.698458 1.68751521 -0.007068 13 35 SH11792 11792 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5846 5861 4690.289787 3315.726284 4003.008036 3.602386462 0.066947 13 36 SH17807 17807 YKR057W_11_551293_551878_INTRON_25_346 5' exon 38.463404 137.106632 38.463404 99.643228 69.053316 1.839184539 -0.025831 13 37 SH19275 19275 YPL143W_16_282121_282969_INTRON_20_544 intron 27.411241 102.046562 27.411241 75.635321 51.523281 1.712003511 -0.020783 13 38 SH6356 6356 snR43 snR43 21 38 28.035641 80.954648 54.4951445 1.736357809 -0.046345 13 39 SH9549 9549 RUF3 RUF3 131 148 29.632705 82.766044 56.1993745 1.749731482 0.035886 13 40 SH5246 5246 snR30 snR30 81 97 26.645763 74.696971 50.671367 1.704762621 -0.063348 13 41 SH16070 16070 YDR005C_4_458099_456832_INTRON_7_86 intron/exon 26.773441 98.514667 26.773441 72.741226 49.7573335 1.696857098 -0.028683 13 42 SH4473 4473 U3b (snR17b) 5' 28.683629 78.761765 53.722697 1.730157807 0.024203 13 43 SH5322 5322 snR30 snR30 461 475 45.279807 122.304176 83.7919915 1.923202513 -0.301072 13 44 SH15040 15040 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.179084 120.994678 28.179084 93.815594 60.997339 1.785310889 -0.220173 13 45 SH15971 15971 YDL136W_4_217600_218367_INTRON_4_408 5' exon 30.354159 114.901094 30.354159 85.546935 57.950547 1.76305754 0.022076 13 46 SH660 660 Gln2 3' flank 30.116565 75.081758 52.5991615 1.720978821 0.163962 13 47 SH17488 17488 YJL024C_10_396288_395627_INTRON_23_99 intron/exon 28.007644 107.873261 28.007644 80.865617 54.4366305 1.735891236 -0.047126 13 48 SH7830 7830 snoRNA cluster1 intergenic/snR74 30.902486 126.663661 30.902486 96.761175 63.8318305 1.805037299 -0.150603 13 49 SH7743 7743 snoRNA cluster1 intergenic 27.08504 94.846155 27.08504 68.761115 47.9230775 1.6805447 0.047596 13 50 SH5089 5089 snR11 snR11 46 64 27.633641 67.125774 47.3797075 1.675592375 0.10931 13 51 SH2215 2215 Phe1 5' flank 27.992103 96.101746 62.0469245 1.79272026 -0.266329 13 52 SH15105 15105 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 28.041631 123.286339 28.041631 96.244708 62.1431695 1.7933934 -0.266263 13 53 SH7744 7744 snoRNA cluster1 intergenic 30.292187 100.786013 30.292187 71.493826 50.8930065 1.706658108 0.223944 13 54 SH12253 12253 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.890082 98.916153 27.890082 72.026071 49.9580765 1.698605709 0.059487 13 55 SH7232 7232 snR65 5' 27.924515 73.662564 50.7935395 1.705808477 0.040305 13 56 SH2138 2138 Met1 3' flank 32.676565 91.919767 62.298166 1.794475262 0.001343 13 57 SH4040 4040 SRP RNA SRP RNA 91 106 32.466194 89.987156 61.226675 1.786940675 0.033826 13 58 SH15956 15956 YDL130W_4_229906_230527_INTRON_115_415 intron 29.662248 120.061147 29.662248 91.398899 60.5305735 1.781974789 -0.111146 13 59 SH12307 12307 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.463437 128.309696 31.463437 97.846259 64.654848 1.810601095 -0.157872 13 60 SH17496 17496 YJL041W_10_365480_368069_INTRON_2_119 intron 28.962318 90.60503 28.962318 62.642712 45.802515 1.660889326 0.266077 13 61 SH12389 12389 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 43.466025 137.88972 43.466025 95.423695 69.44486 1.841640107 0.164018 13 62 SH6532 6532 snR46 snR46 151 167 27.420874 71.068766 49.24482 1.692360554 0.039652 13 63 SH8343 8343 snoRNA cluster4 snR53 27.182508 105.448143 27.182508 79.265635 53.2240715 1.726108094 -0.083462 13 64 SH12878 12878 MT COX1 COX1ai1 28.749089 106.706176 28.749089 78.957087 53.853088 1.731210611 0.026018 13 65 SH4532 4532 U3b (snR17b) U3b 216 231 41.99648 95.381422 68.688951 1.836886884 0.136635 13 66 SH14771 14771 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu 26.383611 103.80283 26.383611 78.419219 52.401415 1.719343014 -0.129053 13 67 SH4644 4644 snR3 snR3 136 153 29.191106 71.226965 50.2090355 1.700781879 0.157925 13 68 SH15926 15926 YDL108W_4_267697_268698_INTRON_29_109 intron 29.6033 99.285792 29.6033 70.682492 50.142896 1.700209413 0.192027 13 69 SH6788 6788 snR50 3' 29.874238 77.598733 53.7364855 1.730269259 0.115727 13 70 SH9485 9485 RUF2 266-268 + 3' 266 27.82093 71.761865 49.7913975 1.697154316 0.058233 13 71 SH15280 15280 MT 9S rRNA 9S 27.961601 110.489498 27.961601 83.527897 55.744749 1.746203964 -0.082657 13 72 SH11910 11910 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6436 6454 890.347545 744.006831 817.177188 2.912316235 0.244132 13 73 SH10013 10013 RUF6 5' 28.022867 74.83381 51.4283385 1.711202494 0.031511 13 74 SH6474 6474 snR45 3' 30.455893 90.208869 60.332381 1.780550465 -0.055532 13 75 SH14461 14461 MT 21S rRNA 21S rRNA3 30.182162 104.018311 30.182162 74.836149 52.5091555 1.720235034 0.171342 13 76 SH18397 18397 YMR125W_13_517538_520445_INTRON_26_347 intron 29.541811 103.540909 29.541811 74.999098 52.2704545 1.718256276 0.12876 13 77 SH18248 18248 YML034W_13_209525_212155_INTRON_1921_2046 intron 28.577522 102.079822 28.577522 74.5023 51.539911 1.712143664 0.072885 13 78 SH21433 21433 Tyr1_2 spliced 41.099462 101.06195 71.080706 1.851751733 -0.000452 13 79 SH14088 14088 MT COB Cytbi4 25.555173 96.275494 25.555173 71.720321 48.637747 1.686973449 -0.104807 13 80 SH17871 17871 YLL050C_12_40413_39803_INTRON_15_193 intron/exon 34.672608 112.569153 34.672608 78.896545 56.7845765 1.754230391 0.3253 13 81 SH2748 2748 Pro5 3' flank 28.325153 70.467154 49.3961535 1.693693132 0.110294 13 82 SH8142 8142 snoRNA cluster 3; intergenic 1407.719482 2795.381805 1407.719482 1388.662323 1398.190903 3.145566472 -0.132843 13 83 SH16918 16918 YGL251C_7_31636_27921_INTRON_59_210 intron 28.495457 96.996838 28.495457 69.501381 48.998419 1.690182067 0.135081 13 84 SH20537 20537 YGR183C spliced 30.613666 95.779578 63.196622 1.800693865 -0.141314 13 85 SH1691 1691 Leu6 tRNA 21 35 61.428007 148.506544 104.9672755 2.021053925 -0.377148 13 86 SH21010 21010 YML124C spliced 26.377299 61.757993 44.067646 1.644119852 0.103419 13 87 SH485 485 Asp2 5' flank - tRNA2 5' flank 2 25.874985 71.527441 48.701213 1.687539778 -0.078271 13 88 SH6897 6897 snR56 3' 29.396009 84.879337 57.137673 1.756922549 -0.008734 13 89 SH15806 15806 YDL061C_4_341182_340627_INTRON_1_408 intron 44.67463 147.784494 44.67463 104.109864 74.392247 1.871527677 0.010424 13 90 SH14466 14466 MT 21S rRNA 21S rRNA3 28.076349 106.347469 28.076349 79.27112 53.6737345 1.729761814 -0.022571 13 91 SH13128 13128 MT COX1 COX1ai3 24.338931 92.583861 24.338931 69.24493 46.7919305 1.670170963 -0.163195 13 92 SH20980 20980 YML056C spliced 28.449808 85.416073 56.9329405 1.755363615 -0.072424 13 93 SH2682 2682 Pro4 tRNA 76 90 31.547397 74.383327 52.965362 1.723991945 0.260775 13 94 SH17435 17435 YIL133C_9_99416_98527_INTRON_32_321 intron 29.477797 100.370122 29.477797 71.892325 50.685061 1.704879974 0.16703 13 95 SH5299 5299 snR30 snR30 346 363 24.913686 72.595944 48.754815 1.688017513 -0.16541 13 96 SH15913 15913 YDL083C_4_307788_306925_INTRON_25_456 intron 30.347705 102.376921 30.347705 73.029216 51.6884605 1.713393597 0.20612 13 97 SH183 183 Arg2 31-45 31 45 42.021347 88.752671 65.387009 1.815491472 0.285694 13 98 SH7785 7785 snoRNA cluster1 intergenic/snR75 29.816302 102.458151 29.816302 73.641849 51.7290755 1.713734717 0.16447 13 99 SH6428 6428 snR45 5' - 5 -14 5 29.840782 86.193181 58.0169815 1.76355513 -0.012397 13 100 SH21497 21497 copy of SH2290 37.026789 104.855068 70.9409285 1.850896868 -0.162309 13 101 SH14188 14188 MT COB Exon6 38.17071 144.697822 38.17071 107.527112 72.848911 1.862423064 -0.189179 13 102 SH20244 20244 YDR367W spliced 33.635905 98.800242 66.2180735 1.820976542 -0.120506 13 103 SH19330 19330 YPL218W_16_138697_139408_INTRON_29_167 intron 63.54441 234.095869 63.54441 171.551459 117.5479345 2.070215002 -0.605791 13 104 SH607 607 Gln1 3' flank 77.413698 202.150195 139.7819465 2.145451084 -0.680768 14 2 SH4213 4213 telomerase RNA telomerase 101 119 23.887269 66.878734 45.3830015 1.656893215 -0.162874 14 3 SH1812 1812 Leu8 86-101 + 3' flank 86 33.780375 86.829369 60.304872 1.7803524 0.142196 14 4 SH5549 5549 snR33 snR33 31 50 25.312792 82.566251 53.9395215 1.731907089 -0.258581 14 5 SH11645 11645 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5111 5124 7851.922025 4572.83915 6212.380588 3.793258054 0.228573 14 6 SH17322 17322 YIL004C_9_348502_347943_INTRON_12_142 intron 25.55672 95.426877 25.55672 70.870157 48.2134385 1.683168106 -0.093247 14 7 SH10979 10979 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1781 1799 16011.69609 8247.959161 12129.82763 4.083854629 0.223733 14 8 SH5242 5242 snR30 snR30 61 77 27.975195 66.064692 47.0199435 1.672282103 0.148257 14 9 SH13328 13328 MT COX1 COX1-ai5a 26.231025 101.993204 26.231025 76.762179 51.496602 1.711778573 -0.119729 14 10 SH2838 2838 Pro7 5' flank - tRNA10 10 219.084785 270.539621 244.812203 2.388833062 0.076229 14 11 SH5028 5028 snR10 snR10 171 188 29.836361 73.907125 51.871743 1.714930841 0.162138 14 12 SH17332 17332 YIL018W_9_316766_317930_INTRON_5_404 exon/intron 28.103448 94.859727 28.103448 67.756279 47.9298635 1.680606192 0.132805 14 13 SH9493 9493 RUF2 3' 25.953343 71.15627 48.5548065 1.686232228 -0.067456 14 14 SH20889 20889 YLR275W spliced 28.055308 71.407762 49.731535 1.696631864 0.079136 14 15 SH12211 12211 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.903892 118.17705 36.903892 82.273158 59.588525 1.775162635 0.33047 14 16 SH1672 1672 Leu6 5' flank 30.260825 112.846661 71.553743 1.854632357 -0.480821 14 17 SH1633 1633 Leu5 tRNA-exon/intron 31 50 28.057001 99.196629 63.626815 1.803640184 -0.312263 14 18 SH1875 1875 Leu9 3' flank 30.259577 68.589577 49.424577 1.693942961 0.263433 14 19 SH3635 3635 Val2 5' flank 34.811549 92.15587 63.4837095 1.802662296 0.05023 14 20 SH34 34 Ala1 tRNA + 3' flank 66 3' flank 26.071662 76.387713 51.2296875 1.709521707 -0.126772 14 21 SH909 909 Glu3 tRNA 56 68 35.437505 89.877372 62.6574385 1.796972637 0.116301 14 22 SH1612 1612 Leu5 5' flank 24.43065 71.160035 47.7953425 1.679385578 -0.183889 14 23 SH3258 3258 Thr1 3' flank 26.569127 73.886966 50.2280465 1.700946288 -0.058432 14 24 SH11068 11068 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2226 2244 37.669049 83.601943 60.635496 1.782726934 0.315476 14 25 SH7405 7405 snR69 5' 30.863855 93.067017 61.965436 1.79214951 -0.085976 14 26 SH3749 3749 Val4 5' flank 28.923339 93.749413 61.336376 1.787718113 -0.18419 14 27 SH7148 7148 snR63 246-255 + 3' 246 28.837965 81.776009 55.306987 1.74278 -0.003288 14 28 SH20841 20841 YLL050C spliced 35.363932 91.460676 63.412304 1.802173533 0.079063 14 29 SH5569 5569 snR33 snR33 131 143 31.53317 76.157197 53.8451835 1.731146861 0.236329 14 30 SH19903 19903 snR17B spliced 27.942689 70.789091 49.36589 1.693426971 0.07974 14 31 SH571 571 Cys1 3' flank 27.79068 93.146941 60.4688105 1.781531426 -0.227684 14 32 SH10664 10664 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 206 224 34.602399 104.541606 69.5720025 1.842434504 -0.211849 14 33 SH133 133 Arg1 41-56 41 56 39.846166 107.120876 73.483521 1.866189958 -0.145439 14 34 SH9919 9919 RUF5-1 RUF5-1 401 420 26.626005 71.179588 48.9027965 1.689333695 -0.018493 14 35 SH17788 17788 YKL186C_11_93537_92746_INTRON_71_233 5' exon 31.012528 122.798811 31.012528 92.786283 61.8994055 1.791686478 -0.074871 14 36 SH10756 10756 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 666 683 484.798927 646.790852 565.7948895 2.75265902 -0.323271 14 37 SH8025 8025 snoRNA cluster 2 snR55 30.082767 103.167902 30.082767 74.085135 52.083951 1.716703922 0.175226 14 38 SH17300 17300 YHR141C_8_382752_381991_INTRON_5_445 3' exon 129.463096 345.845015 129.463096 217.381919 173.4225075 2.239105461 -0.200204 14 39 SH11560 11560 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4686 4699 44.159689 98.69513 71.4274095 1.8538649 0.108821 14 40 SH14896 14896 MT tRNA Ile 5' / tRNA 26.463104 111.751525 26.463104 86.288421 56.3757625 1.751092429 -0.218993 14 41 SH14533 14533 MT 21S rRNA 21S rRNA3 26.840584 104.057421 26.840584 78.216837 52.5287105 1.72039674 -0.093977 14 42 SH17884 17884 YLR048W_12_242233_243350_INTRON_91_449 intron 26.864304 92.930946 26.864304 67.066642 46.965473 1.671778701 0.05578 14 43 SH6080 6080 snR37 snR37 316 335 29.005122 73.143637 51.0743795 1.708203099 0.119296 14 44 SH7226 7226 snR65 5' 31.274868 102.480468 66.877668 1.825281121 -0.256978 14 45 SH7903 7903 snoRNA cluster1 intergenic 24.341079 92.03019 24.341079 68.689111 46.515095 1.667593912 -0.15484 14 46 SH17879 17879 YLR048W_12_242233_243350_INTRON_91_449 intron 35.298781 120.925382 35.298781 86.626601 60.962691 1.785064129 0.187756 14 47 SH16711 16711 YGL031C_7_438393_437938_INTRON_1_456 intron 42.154714 133.419035 42.154714 92.264321 67.2095175 1.827430778 0.208262 14 48 SH6977 6977 snR60 5' 26.501119 68.982149 47.741634 1.678897279 0.002544 14 49 SH7984 7984 snoRNA cluster 2 snR57 26.689206 94.69183 26.689206 69.002624 47.845915 1.679844864 0.015879 14 50 SH1203 1203 Ile1 5' flank 33.594068 86.625489 60.1097785 1.778945128 0.138431 14 51 SH3500 3500 Tyr1 tRNA-intron/exon 41 58 29.18142 81.840545 55.5109825 1.744378914 0.01823 14 52 SH8017 8017 snoRNA cluster 2 snR55 29.368467 105.178416 29.368467 76.809949 53.089208 1.725006246 0.093784 14 53 SH12888 12888 MT COX1 COX1ai1 34.194196 139.279885 34.194196 106.085689 70.1399425 1.845965406 -0.251855 14 54 SH20341 20341 YER093C-A spliced 29.90371 93.459007 61.6813585 1.79015393 -0.134777 14 55 SH9241 9241 snR6 / U6 RNA U6 76 92 54.113086 163.710563 108.9118245 2.037075033 -0.688856 14 56 SH17993 17993 YLR287C-A_12_713158_712537_INTRON_4_433 exon/intron 27.95565 121.453424 27.95565 94.497774 61.226712 1.786940938 -0.242036 14 57 SH12526 12526 MT_ORF6 + ORF7 (hypothetical) ORF6/7 27.530739 95.980139 27.530739 69.4494 48.4900695 1.685652807 0.069471 14 58 SH19467 19467 ADH1 29.174802 95.170564 62.172683 1.793599609 -0.195879 14 59 SH13019 13019 MT COX1 COX1ai2 24.206325 85.641078 24.206325 62.434753 43.320539 1.636693852 -0.068199 14 60 SH6354 6354 snR43 snR43 11 27 28.783694 70.150747 49.4672205 1.694317509 0.145539 14 61 SH18536 18536 YMR230W_13_732413_733140_INTRON_53_462 intron 29.301976 129.646515 29.301976 101.344539 65.3232575 1.815067834 -0.290038 14 62 SH3667 3667 Val2 3' flank 24.925861 72.427038 48.6764495 1.687318893 -0.162234 14 63 SH11170 11170 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2736 2753 29.032862 83.653416 56.343139 1.750841039 -0.013323 14 64 SH16562 16562 YER133W_5_432491_433954_INTRON_178_702 intron 51.52916 165.079327 51.52916 114.550167 83.0396635 1.919285581 -0.055113 14 65 SH2875 2875 Pro7 3' flank 26.583556 70.253123 48.4183395 1.685009891 -0.008994 14 66 SH790 790 Glu1 5' flank 27.36521 74.610205 50.9877075 1.707465486 -0.010925 14 67 SH18654 18654 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.068585 108.490805 28.068585 81.42222 54.7454025 1.738347653 -0.049898 14 68 SH2407 2407 Phe4 86-91 + 3' flank 86 28.352007 80.555124 54.4535655 1.736026322 -0.020249 14 69 SH21811 21811 copy of SH15491 28.376426 77.904449 53.1404375 1.725425126 0.014872 14 70 SH10390 10390 RUF7 3' 33.251514 100.582594 66.917054 1.825536813 -0.166637 14 71 SH13482 13482 MT COX1 intronic 25.9777 99.172718 25.9777 74.195018 50.086359 1.699719462 -0.105778 14 72 SH13546 13546 MT COX1 intronic 33.057581 119.184943 33.057581 87.127362 60.0924715 1.778820066 0.107948 14 73 SH4187 4187 telomerase RNA 5' 28.270423 85.956048 57.1132355 1.756736764 -0.090652 14 74 SH18877 18877 YNR053C_14_723108_721117_INTRON_811_1341 intron 28.395002 96.361178 28.395002 68.966176 48.680589 1.687355824 0.135698 14 75 SH15932 15932 YDL115C_4_255042_253994_INTRON_1_88 5' exon 30.583089 123.423503 30.583089 93.840414 62.2117515 1.793872429 -0.11101 14 76 SH13322 13322 MT COX1 COX1-ai5a 27.550094 106.330256 27.550094 79.780162 53.665128 1.72969217 -0.064631 14 77 SH1028 1028 Gly2 3' flank 26.705752 75.874306 51.290029 1.710032945 -0.074024 14 78 SH16133 16133 YDR064W_4_579453_580447_INTRON_22_560 intron/exon 37.472326 126.520726 37.472326 90.0484 63.760363 1.804550781 0.160162 14 79 SH12681 12681 MT tRNA Trp tRNA 29.746098 101.260883 29.746098 72.514785 51.1304415 1.708679543 0.175471 14 80 SH21113 21113 YNL096C spliced 27.871172 87.238672 57.554922 1.76008247 -0.13228 14 81 SH5268 5268 snR30 snR30 191 207 36.12106 105.732135 70.9265975 1.850809126 -0.199866 14 82 SH21646 21646 copy of SH8561 31.389876 74.003664 52.69677 1.721783996 0.256467 14 83 SH6694 6694 snR49 5' - 12 -4 12 28.898436 72.424507 50.6614715 1.7046778 0.122245 14 84 SH21255 21255 YPL075W spliced 35.74684 103.141843 69.4443415 1.841636864 -0.157273 14 85 SH12871 12871 MT COX1 COX1ai1 26.692313 102.212184 26.692313 76.519871 51.606092 1.712700972 -0.083123 14 86 SH4727 4727 snR4 171-186 + 3' 171 31.021126 88.20002 59.610573 1.775323296 0.003919 14 87 SH624 624 Gln2 5' flank 27.867747 79.311846 53.5897965 1.729082108 -0.037136 14 88 SH11461 11461 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4191 4206 51.069531 99.599849 75.33469 1.876995006 0.215507 14 89 SH18116 18116 YLR367W_12_855877_857316_INTRON_698_1180 3' exon 27.161734 111.072041 27.161734 84.910307 56.0360205 1.748467285 -0.153776 14 90 SH10372 10372 RUF7 RUF7 471 485 66.958418 117.551675 92.2550465 1.964990132 0.147299 14 91 SH19309 19309 YPL198W_16_173151_174701_INTRON_12_420 intron 26.545052 96.238097 26.545052 70.693045 48.6190485 1.686806455 -0.017775 14 92 SH608 608 Gln1 3' flank 28.007517 62.432621 45.220069 1.655331221 0.204742 14 93 SH11139 11139 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2581 2594 18684.07434 7107.199322 12895.63683 4.110442794 0.66041 14 94 SH2525 2525 Pro1 3' flank 28.855439 139.067855 83.961647 1.924080949 -0.94991 14 95 SH1656 1656 Leu5 3' flank 25.629868 133.322601 79.4762345 1.900237283 -0.961383 14 96 SH18369 18369 YMR079W_13_424988_426058_INTRON_10_165 intron 26.933228 138.384206 26.933228 112.450978 69.692103 1.84318357 -0.573258 14 97 SH7332 7332 snR66 3' 26.728841 83.850319 55.28958 1.742643291 -0.17147 14 98 SH845 845 Glu2 5' flank - tRNA10 10 31.018178 83.384711 57.2014445 1.757406996 0.090642 14 99 SH12683 12683 MT tRNA Trp tRNA / 3' 30.396284 115.833998 30.396284 86.437714 58.416999 1.766539243 0.007907 14 100 SH3725 3725 Val3 3' flank 31.403821 83.298339 57.35108 1.758541601 0.108783 14 101 SH178 178 Arg2 6-12 6 18 28.37386 75.271848 51.822854 1.714521327 0.049121 14 102 SH5258 5258 snR30 snR30 141 155 31.251865 76.931204 54.0915345 1.733129302 0.20932 14 103 SH10724 10724 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 506 525 28.879035 76.514504 52.6967695 1.721783992 0.065978 14 104 SH21630 21630 copy of SH7930 38.052779 112.49759 75.2751845 1.876651829 -0.284243 15 2 SH21381 21381 Lys3_4 spliced 28.78095 94.552824 61.666887 1.790052025 -0.203996 15 3 SH5196 5196 snR13 3' 24.628888 74.47974 49.554314 1.695081468 -0.212134 15 4 SH20833 20833 YKR095W-A spliced 35.302922 101.238483 68.2707025 1.834234372 -0.129136 15 5 SH6868 6868 snR56 5' 39.45451 104.763538 72.109024 1.857989617 -0.108257 15 6 SH1402 1402 Leu1 tRNA 81 97 2722.163056 3543.738309 3132.950683 3.495953558 -0.746624 15 7 SH8219 8219 snoRNA cluster 3; snR51 32.752478 135.825691 32.752478 104.073213 68.4128455 1.835137654 -0.248838 15 8 SH3709 3709 Val3 tRNA 26 40 37.170851 91.060413 64.115632 1.806963928 0.130563 15 9 SH9006 9006 snR17a / U3a U3a 316 328 33.266269 92.599431 62.93285 1.7988774 0.001671 15 10 SH18647 18647 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.607997 123.704996 29.607997 95.096999 62.352498 1.794853857 -0.174956 15 11 SH11444 11444 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4106 4122 580.423421 474.233408 527.3284145 2.722081173 0.404767 15 12 SH21129 21129 YNL130C spliced 28.004408 84.231366 56.117887 1.74910131 -0.088172 15 13 SH18063 18063 YLR344W_12_819312_820142_INTRON_20_466 5' exon 41.058643 148.895015 41.058643 108.836372 74.9475075 1.874757194 -0.151972 15 14 SH1524 1524 Leu3 tRNA 91 108 29.784082 124.483854 77.133968 1.887245673 -0.695338 15 15 SH4835 4835 snR8 5' 29.784768 69.605002 49.694885 1.69631169 0.218873 15 16 SH17442 17442 YIL133C_9_99416_98527_INTRON_32_321 intron 27.581917 106.474391 27.581917 79.892474 53.7371955 1.730274997 -0.063864 15 17 SH3575 3575 Tyr2 3' flank 27.597554 66.736454 47.167004 1.673638291 0.112376 15 18 SH3098 3098 Ser3 3' flank 32.446432 82.80343 57.624931 1.760610418 0.161715 15 19 SH18427 18427 YMR142C_13_551206_550205_INTRON_5_406 exon/intron 26.434432 104.007562 26.434432 78.57313 52.503781 1.72019058 -0.127256 15 20 SH12241 12241 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.021052 109.088195 29.021052 81.067143 55.0440975 1.740710755 0.017353 15 21 SH19933 19933 YBL026W spliced 29.007777 82.306077 55.656927 1.745519224 0.001306 15 22 SH19620 19620 RNA14 1.1 28.950359 93.696814 61.3235865 1.787627547 -0.182072 15 23 SH19093 19093 YOR312C_15_901173_900242_INTRON_2_427 intron 27.651089 91.435591 27.651089 64.784502 46.2177955 1.664809227 0.144593 15 24 SH4322 4322 telomerase RNA telomerase 646 665 26.191657 69.977887 48.084772 1.682007561 -0.033829 15 25 SH7980 7980 snoRNA cluster 2 snR57 217.586927 564.559831 217.586927 347.972904 282.7799155 2.45144856 -0.344166 15 26 SH16676 16676 YFR032C-A_6_223758_223245_INTRON_1_331 3' exon 799.799285 1858.929938 799.799285 1060.130653 929.964969 2.968466589 -0.454229 15 27 SH1332 1332 Ile3 tRNA-intron 41 57 28.367351 78.541907 53.454629 1.72798532 0.006111 15 28 SH19769 19769 Negative Control 31.46321 92.764039 62.1136245 1.793186872 -0.05519 15 29 SH10877 10877 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1271 1284 29945.71061 16593.36977 23269.54019 4.366787802 -0.063698 15 30 SH4768 4768 snR5 snR5 11 27 34.261941 89.246925 61.754433 1.790668139 0.10176 15 31 SH20241 20241 YDR367W spliced 40.515039 94.207332 67.3611855 1.828409722 0.132635 15 32 SH17292 17292 YHR141C_8_382752_381991_INTRON_5_445 intron 31.764419 112.725591 31.764419 81.961172 56.8627955 1.754828207 0.149098 15 33 SH16309 16309 YDR450W_4_1359912_1360787_INTRON_48_482 intron 25.893718 91.583508 25.893718 66.68979 46.291754 1.665503637 -0.009242 15 34 SH4443 4443 telomerase RNA telomerase 1251 1267 31.129894 98.423617 64.7767555 1.811419192 -0.178928 15 35 SH1467 1467 Leu2 106-114 + 3' flank 106 26.899095 76.410229 51.654662 1.713109524 -0.066886 15 36 SH12029 12029 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS/3'flank 7031 7053 29.070208 71.636667 50.3534375 1.702029124 0.144363 15 37 SH11653 11653 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5151 5168 73.104312 102.017646 87.560979 1.942310609 0.50272 15 38 SH21171 21171 YNL312W spliced 32.929413 95.449395 64.189404 1.807463343 -0.068584 15 39 SH1294 1294 Ile2 3' flank 28.347177 69.230122 48.7886495 1.688318797 0.128786 15 40 SH19294 19294 YPL175W_16_218629_220087_INTRON_18_117 intron/exon 28.603277 111.709091 28.603277 84.105814 56.3545455 1.750928952 -0.04681 15 41 SH10760 10760 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 686 699 38.198302 103.996821 71.0975615 1.851854706 -0.119728 15 42 SH15976 15976 YDL136W_4_217600_218367_INTRON_4_408 intron 29.401708 120.749403 29.401708 92.347695 60.8747015 1.784436845 -0.138931 15 43 SH13912 13912 MT COB Cytbi3 27.316782 105.457754 27.316782 79.140972 53.228877 1.726147304 -0.072601 15 44 SH10527 10527 RUF8 RUF8 561 578 29.700802 73.977549 51.8391755 1.714658085 0.152604 15 45 SH8954 8954 snR17a / U3a U3a 56 75 27.270567 78.604055 52.937311 1.723761877 -0.068976 15 46 SH10804 10804 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 906 922 2320.538855 1946.475319 2133.507087 3.32909409 -0.007244 15 47 SH4776 4776 snR5 snR5 51 70 26.85288 83.7921 55.32249 1.742901719 -0.162051 15 48 SH17006 17006 YGR148C_7_788173_787307_INTRON_1_392 exon/intron 28.948703 109.535822 28.948703 81.587119 55.267911 1.74247305 0.006249 15 49 SH10926 10926 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1516 1533 71.218597 118.600441 94.909519 1.977309772 0.191731 15 50 SH17008 17008 YGR148C_7_788173_787307_INTRON_1_392 intron 41.347357 150.003116 41.347357 109.655759 75.501558 1.877955914 -0.16118 15 51 SH7221 7221 snR64 3' 30.284912 73.556888 51.9209 1.715342212 0.195009 15 52 SH4724 4724 snR4 snR4 156 172 28.520223 71.036205 49.778214 1.69703931 0.115794 15 53 SH19747 19747 Negative Control 38.140755 98.250104 68.1954295 1.833755269 -0.00372 15 54 SH12982 12982 MT COX1 COX1ai2 27.129095 103.359242 27.129095 77.230147 52.179621 1.71750092 -0.061121 15 55 SH4299 4299 telomerase RNA telomerase 531 551 30.007557 69.071451 49.539504 1.694951654 0.240608 15 56 SH304 304 Arg4 3' flank 27.670717 93.466218 60.5684675 1.782246585 -0.238768 15 57 SH163 163 Arg2 5' flank 31.787008 80.947667 56.3673375 1.751027521 0.169298 15 58 SH2100 2100 Lys4 3' flank 30.821466 87.349763 59.0856145 1.771481757 0.010262 15 59 SH19255 19255 YPL129W_16_305297_306136_INTRON_10_114 3' exon 48.756596 153.915599 48.756596 106.159003 77.4577995 1.889065155 0.047052 15 60 SH14557 14557 MT 21S rRNA 21S rRNA3 30.907638 101.40872 30.907638 71.501082 51.20436 1.709306942 0.26174 15 61 SH1102 1102 Gly4 5' flank - tRNA2 2 29.390775 89.694647 59.542711 1.774828604 -0.094335 15 62 SH13086 13086 MT COX1 COX1ai3 27.205667 98.651067 27.205667 72.4454 49.8255335 1.697451958 0.006069 15 63 SH5754 5754 snR35 5' 38.233867 95.222763 66.728315 1.824310158 0.062841 15 64 SH10467 10467 RUF8 RUF8 261 283 26.618326 71.94555 49.281938 1.692687778 -0.029319 15 65 SH9051 9051 snR17a / U3a 3' 27.076104 82.301295 54.6886995 1.737897596 -0.128479 15 66 SH12010 12010 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6936 6953 30.123858 79.463614 54.793736 1.738730913 0.107628 15 67 SH6028 6028 snR37 snR37 56 73 28.329914 90.946663 59.6382885 1.775525172 -0.164983 15 68 SH12239 12239 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.554287 98.265365 28.554287 70.711078 49.6326825 1.695767748 0.122494 15 69 SH8169 8169 snoRNA cluster 3; snR70 30.93447 115.337775 30.93447 85.403305 58.1688875 1.764690758 0.050022 15 70 SH5971 5971 snR36 snR36 311 328 28.447223 79.7514 54.0993115 1.733191738 -0.003892 15 71 SH14976 14976 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.28207 95.27463 28.28207 67.99256 48.137315 1.682481863 0.141666 15 72 SH19187 19187 YPL079W_16_406631_407534_INTRON_12_432 intron 35.290944 137.077101 35.290944 102.786157 69.0385505 1.839091665 -0.160709 15 73 SH5810 5810 snR35 snR35 236 253 32.918236 78.95971 55.938973 1.747714489 0.254567 15 74 SH13679 13679 MT ORF 5 (hypothetical) 5' 28.313251 103.768845 28.313251 76.455594 52.3844225 1.71920216 0.029469 15 75 SH9692 9692 RUF4 RUF4 236 255 28.149338 82.818922 55.48413 1.744168781 -0.061514 15 76 SH20399 20399 YFR024C-A spliced 29.885418 95.161187 62.5233025 1.79604191 -0.163517 15 77 SH7028 7028 snR62 5' 33.881772 88.802925 61.3423485 1.787760399 0.102351 15 78 SH19043 19043 YOR234C_15_779404_778554_INTRON_20_546 intron 29.14532 112.454688 29.14532 84.309368 56.727344 1.75379245 -0.013859 15 79 SH15126 15126 MT tRNA Phe 5' / tRNA 24.975688 97.933794 24.975688 73.958106 49.466897 1.694314668 -0.178462 15 80 SH12570 12570 MT_15S MT_15S 27.718782 100.971262 27.718782 74.25248 50.985631 1.707447799 0.01841 15 81 SH4292 4292 telomerase RNA telomerase 496 517 25.476975 63.712135 44.594555 1.649281835 0.006848 15 82 SH16010 16010 YDL137W_4_216158_217074_INTRON_1_332 intron 32.235214 134.108124 32.235214 102.87291 67.554062 1.829651468 -0.238889 15 83 SH10187 10187 RUF6 RUF6 781 800 29.500202 94.387551 61.9438765 1.79199838 -0.168253 15 84 SH20425 20425 YGL031C spliced 33.957708 86.853098 60.405403 1.781075786 0.148781 15 85 SH10287 10287 RUF7 RUF7 46 68 26.935919 75.979748 51.4578335 1.711451497 -0.05883 15 86 SH3953 3953 RNase MRP RNaseMRP 181 195 32.198203 73.663179 52.930691 1.723707564 0.30899 15 87 SH20913 20913 YLR333C spliced 27.911923 85.232951 56.572437 1.752604887 -0.10624 15 88 SH4350 4350 telomerase RNA telomerase 786 808 31.562387 100.323364 65.9428755 1.819167881 -0.205957 15 89 SH15297 15297 MT 9S rRNA 3' 25.405222 86.594703 25.405222 62.189481 43.7973515 1.641447849 0.026158 15 90 SH12654 12654 MT_15S MT_15S 33.052339 123.546028 33.052339 91.493689 62.273014 1.794299886 0.020551 15 91 SH5807 5807 snR35 snR35 221 240 28.716217 77.615668 53.1659425 1.725633517 0.041019 15 92 SH21260 21260 YPL079W spliced 34.203573 92.574669 63.389121 1.80201473 0.025963 15 93 SH13649 13649 MT ATP6 ATP6 43.108142 148.303495 43.108142 106.195353 74.6517475 1.873039978 -0.060397 15 94 SH15921 15921 YDL083C_4_307788_306925_INTRON_25_456 3' exon 26.755882 113.298081 26.755882 87.542199 57.1490405 1.757008943 -0.212705 15 95 SH5990 5990 snR36 3' 29.569166 82.609252 56.089209 1.748879315 0.033741 15 96 SH6895 6895 snR56 3' 26.122171 70.702449 48.41231 1.684955806 -0.048829 15 97 SH11491 11491 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4341 4354 13516.97997 9561.696746 11539.33836 4.062180908 -0.230857 15 98 SH1411 1411 Leu1 3' flank 31.909736 76.346594 54.128165 1.733423304 0.256209 15 99 SH19559 19559 CBP1 2.2 28.109956 83.316086 55.713021 1.745956708 -0.070145 15 100 SH8332 8332 snoRNA cluster4 intergenic/snR53 28.538325 107.0582 28.538325 79.519875 54.0291 1.732627733 0.005043 15 101 SH16535 16535 YER131W_5_423587_424307_INTRON_1_361 intron 34.500919 120.521906 34.500919 87.020987 60.760953 1.783624577 0.158991 15 102 SH1327 1327 Ile3 tRNA 16 31 26.473449 70.668663 48.571056 1.686377546 -0.022646 15 103 SH10174 10174 RUF6 RUF6 716 728 22.514906 64.943037 43.7289715 1.640769263 -0.243622 15 104 SH1719 1719 Leu6 3' flank 35.767497 94.912878 65.3401875 1.815180376 0.013525 16 2 SH10051 10051 RUF6 RUF6 101 118 30.806814 88.705154 59.755984 1.776381402 -0.014195 16 3 SH8909 8909 LSR1 / U2 RNA 3' 30.578504 67.713244 49.145874 1.691487063 0.295963 16 4 SH17932 17932 YLR093C_12_327416_326514_INTRON_17_157 exon/intron 25.666033 100.883782 25.666033 76.217749 50.941891 1.707075062 -0.154832 16 5 SH15456 15456 YBL087C_2_60732_59815_INTRON_43_546 intron 29.474365 103.425639 29.474365 74.951274 52.2128195 1.717777146 0.125092 16 6 SH12028 12028 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7026 7046 27.035507 76.059786 51.5476465 1.712208842 -0.052733 16 7 SH1131 1131 Gly4 3' flank 28.076854 76.604007 52.3404305 1.71883729 0.011729 16 8 SH16024 16024 YDL189W_4_122079_123590_INTRON_1_99 intron/exon 27.101624 98.271707 27.101624 72.170083 49.6358535 1.695795494 0.002343 16 9 SH3470 3470 Trp1 3' flank 29.531028 72.181327 50.8561775 1.706343714 0.166413 16 10 SH20476 20476 YGL189C spliced 27.783325 79.271617 53.527471 1.728576725 -0.042345 16 11 SH19306 19306 YPL198W_16_173151_174701_INTRON_12_420 intron 28.025736 105.386171 28.025736 78.360435 53.1930855 1.725855183 -0.014401 16 12 SH6330 6330 snR42 3' 29.98902 96.295559 63.1422895 1.800320325 -0.177217 16 13 SH19338 19338 YPL241C_16_96258_95372_INTRON_26_105 intron 29.506089 114.346983 29.506089 85.840894 57.6734915 1.760976244 -0.021157 16 14 SH17307 17307 YHR203C_8_505526_504472_INTRON_15_283 intron 29.192975 119.130706 29.192975 90.937731 60.065353 1.778624034 -0.124665 16 15 SH6629 6629 snR48 5' 27.921494 88.734429 58.3279615 1.765876799 -0.146324 16 16 SH18330 18330 YML094W_13_82275_82849_INTRON_17_99 intron 24.579938 82.053612 24.579938 58.473674 41.526806 1.618328529 0.028146 16 17 SH3476 3476 Tyr1 5' flank 41.914745 93.566938 67.7408415 1.830850587 0.174648 16 18 SH20252 20252 YDR381W spliced 32.211208 80.163795 56.1875015 1.749639721 0.202095 16 19 SH14700 14700 MT tRNA thr2 5' / tRNA 26.764318 98.117019 26.764318 72.352701 49.5585095 1.695118236 -0.024201 16 20 SH15120 15120 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 3' 29.446481 99.665893 29.446481 71.219412 50.3329465 1.701852355 0.174443 16 21 SH6260 6260 snR42 snR42 81 98 29.027066 79.444168 54.235617 1.734284585 0.037991 16 22 SH12302 12302 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.113306 128.31344 33.113306 96.200134 64.65672 1.810613669 -0.079734 16 23 SH19728 19728 Negative Control 30.782146 92.852973 61.8175595 1.791111856 -0.085962 16 24 SH18243 18243 YML026C_13_223828_222987_INTRON_48_448 3' exon 35.314558 145.606111 35.314558 111.291553 73.3030555 1.865122078 -0.324143 16 25 SH20664 20664 YIL052C spliced 42.135172 102.634977 72.3850745 1.859649026 -0.010796 16 26 SH13602 13602 MT ATP8/AAP1 ATP8 28.207402 97.101386 28.207402 69.893984 49.050693 1.690645148 0.110109 16 27 SH19946 19946 YBL040C spliced 26.841024 76.380096 51.61056 1.712738571 -0.070669 16 28 SH4596 4596 U3b (snR17b) 3' 25.575192 69.029828 47.30251 1.674884186 -0.066609 16 29 SH3911 3911 RNase MRP 5' 27.793827 74.596286 51.1950565 1.709228027 0.019184 16 30 SH247 247 Arg3 3' flank 25.457578 72.907388 49.182483 1.691810451 -0.127928 16 31 SH21891 21891 copy of SH18801 25.104718 71.9153 48.510009 1.685831355 -0.14166 16 32 SH15389 15389 YBL040C_2_142830_142074_INTRON_23_119 intron 29.477319 106.361109 29.477319 77.88379 53.6805545 1.729816993 0.086854 16 33 SH7967 7967 snoRNA cluster 2 5' 30.218226 101.262881 30.218226 72.044655 51.1314405 1.708688028 0.211653 16 34 SH1867 1867 Leu9 tRNA 76 90 28.79779 93.439344 61.118567 1.786173163 -0.184888 16 35 SH1671 1671 Leu6 5' flank 29.290415 73.277845 51.28413 1.709982992 0.135903 16 36 SH8793 8793 LSR1 / U2 RNA U2 606 625 29.478318 79.207531 54.3429245 1.735143007 0.070044 16 37 SH13104 13104 MT COX1 COX1ai3 29.392992 108.604498 29.392992 80.211506 54.802249 1.738798382 0.051971 16 38 SH20532 20532 YGR148C spliced 31.514538 85.779354 58.646946 1.768245401 0.06809 16 39 SH18264 18264 YML056C_13_164176_162194_INTRON_461_868 intron 26.71952 100.257723 26.71952 74.538203 50.6288615 1.704398161 -0.055983 16 40 SH577 577 Gln1 5' flank 35.802213 91.078328 63.4402705 1.802365026 0.098098 16 41 SH10948 10948 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1626 1644 31.41605 69.367057 50.3915535 1.702357747 0.322818 16 42 SH2156 2156 Met2 5' flank 28.429851 91.868063 60.148957 1.779228101 -0.175863 16 43 SH13161 13161 MT COX1 intronic 29.919446 117.86186 29.919446 88.942414 59.43093 1.774012526 -0.057445 16 44 SH16156 16156 YDR129C_4_715372_713333_INTRON_22_132 exon/intron 29.992004 117.743996 29.992004 88.751992 59.371998 1.773581664 -0.050888 16 45 SH16 16 Ala1 5' flank 34.72239 89.536026 62.129208 1.793295817 0.106603 16 46 SH13828 13828 MT COB Cytbi2 27.497224 101.426939 27.497224 74.929715 51.2134695 1.709384198 -0.005757 16 47 SH4429 4429 telomerase RNA telomerase 1181 1203 27.293022 64.527298 45.91016 1.661908806 0.123309 16 48 SH16363 16363 YEL012W_5_131772_132551_INTRON_6_128 intron 29.023142 123.726632 29.023142 95.70349 62.363316 1.7949292 -0.211493 16 49 SH649 649 Gln2 tRNA 31 47 154.613162 436.836714 295.724938 2.470887949 -1.143692 16 50 SH21666 21666 copy of SH9401 31.58165 80.895451 56.2385505 1.750034119 0.161622 16 51 SH20869 20869 YLR128W spliced 27.574125 93.284477 60.429301 1.781247571 -0.240437 16 52 SH2732 2732 Pro5 tRNA-intron 41 56 30.496246 89.814222 60.155234 1.779273421 -0.046977 16 53 SH6619 6619 snR48 5' 28.741879 69.564094 49.1529865 1.69154991 0.150798 16 54 SH1444 1444 Leu2 5' flank - tRNA9 9 29.082803 75.789831 52.436317 1.71963218 0.088753 16 55 SH10787 10787 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 821 840 1011.249301 1429.7154 1220.482351 3.086531503 -0.615144 16 56 SH12922 12922 MT COX1 COX1ai2 29.20282 100.642642 29.20282 72.439822 50.821321 1.706045949 0.141776 16 57 SH8592 8592 snR19 / U1 RNA U1 456 472 27.513615 73.857135 50.685375 1.704882664 0.009226 16 58 SH11680 11680 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5286 5299 6925.822568 3743.476654 5334.649611 3.727105899 0.382077 16 59 SH3518 3518 Tyr1 3' flank 27.944053 93.394924 60.6694885 1.782970333 -0.224431 16 60 SH10416 10416 RUF8 RUF8 6 23 31.037783 90.130118 60.5839505 1.782357589 -0.028851 16 61 SH9278 9278 RUF1 5' 27.259665 87.355504 57.3075845 1.758212103 -0.17542 16 62 SH4712 4712 snR4 snR4 96 112 29.594372 74.904071 52.2492215 1.718079824 0.133378 16 63 SH21046 21046 YMR142C spliced 29.198502 81.152994 55.175748 1.741748229 0.027779 16 64 SH293 293 Arg4 61-72 + 3' flank 61 3' flank 26.897329 85.345245 56.121287 1.749127622 -0.177323 16 65 SH8973 8973 snR17a / U3a U3a 151 169 29.498667 79.048688 54.2736775 1.73458925 0.073354 16 66 SH872 872 Glu2 3' flank 32.190161 98.913 65.5515805 1.816583167 -0.160373 16 67 SH2631 2631 Pro3 3' flank 30.1999 70.708374 50.454137 1.702896782 0.229255 16 68 SH12710 12710 MT ORF 8 (hypothetical) ORF8 28.086667 104.114331 28.086667 77.027664 52.5571655 1.720631935 0.006866 16 69 SH20671 20671 YIL069C spliced 32.884431 85.909893 59.397162 1.773765695 0.122688 16 70 SH16152 16152 YDR092W_4_629869_630598_INTRON_31_298 3' exon 30.366008 122.183556 30.366008 92.817548 61.591778 1.789522741 -0.103589 16 71 SH18595 18595 YNL069C_14_494998_493953_INTRON_29_477 intron 27.788487 104.782504 27.788487 77.994017 52.891252 1.723383847 -0.025727 16 72 SH9232 9232 snR6 / U6 RNA U6 31 50 104.930028 229.428909 167.1794685 2.22318294 -0.541905 16 73 SH6211 6211 snR40 3' 30.07446 77.449492 53.761976 1.730475223 0.13024 16 74 SH14747 14747 MT ORF11; tRNA Leu; tRNA Gln 5' / orf11 27.874573 99.018804 27.874573 72.144231 50.009402 1.699051661 0.056843 16 75 SH7922 7922 snoRNA cluster1 snR72 27.630931 94.644334 27.630931 68.013403 47.822167 1.679629252 0.096516 16 76 SH1739 1739 Leu7 5' flank - tRNA6 6 92.569074 130.997169 111.7831215 2.048376233 0.286778 16 77 SH173 173 Arg2 5' flank 29.083464 80.934867 55.0091655 1.740435057 0.023036 16 78 SH4065 4065 SRP RNA SRP RNA 216 237 26.963464 75.593845 51.2786545 1.709936621 -0.051975 16 79 SH1441 1441 Leu2 5' flank 34.395043 104.722894 69.5589685 1.842353133 -0.220368 16 80 SH3442 3442 Trp1 tRNA 41 57 27.895417 88.225478 58.0604475 1.763880379 -0.141904 16 81 SH14076 14076 MT COB Cytbi4 25.770436 98.940103 25.770436 74.169667 49.9700515 1.698709797 -0.120876 16 82 SH13792 13792 MT COB intronic 27.952817 94.793826 27.952817 67.841009 47.896913 1.680307524 0.121256 16 83 SH18032 18032 YLR316C_12_766358_765266_INTRON_230_285 intron 28.76001 107.761907 28.76001 80.001897 54.3809535 1.735446818 0.013572 16 84 SH1183 1183 His1 3' flank 27.294303 82.60453 54.9494165 1.739963085 -0.117038 16 85 SH15641 15641 YBR186W_2_600511_602318_INTRON_1552_1664 intron/exon 28.121068 112.001563 28.121068 84.880495 56.5007815 1.752054455 -0.088025 16 86 SH17340 17340 YIL018W_9_316766_317930_INTRON_5_404 intron 28.677594 117.012328 28.677594 89.334734 59.006164 1.770897382 -0.120993 16 87 SH20703 20703 YJL001W spliced 25.739158 72.607288 49.173223 1.691728675 -0.102786 16 88 SH15283 15283 MT 9S rRNA 9S 31.807588 124.419732 31.807588 93.612144 62.709866 1.797335873 -0.058742 16 89 SH11666 11666 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5216 5229 32.237532 83.851357 58.0444445 1.763760659 0.133615 16 90 SH5012 5012 snR10 snR10 91 110 26.510927 62.404707 44.457817 1.647948134 0.102278 16 91 SH15741 15741 YCR028C-A_3_173432_172942_INTRON_243_325 intron 24.392969 90.126036 24.392969 66.733067 45.563018 1.658612483 -0.121501 16 92 SH10118 10118 RUF6 RUF6 436 452 34.410861 115.27493 74.8428955 1.874150581 -0.418007 16 93 SH13008 13008 MT COX1 COX1ai2 28.436507 105.508457 28.436507 78.07195 53.2542285 1.726354097 0.016707 16 94 SH3384 3384 Thr4 tRNA 6 22 26.954185 67.318292 47.1362385 1.673354923 0.058619 16 95 SH21597 21597 copy of SH6473 28.028631 71.922112 49.9753715 1.698756031 0.070417 16 96 SH10991 10991 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1841 1860 6829.42806 5223.098495 6026.263278 3.780048101 -0.163601 16 97 SH4068 4068 SRP RNA SRP RNA 231 248 28.348768 74.286578 51.317673 1.710266955 0.060645 16 98 SH10319 10319 RUF7 RUF7 206 222 33.695223 92.573225 63.134224 1.800264847 0.013196 16 99 SH20345 20345 YER093C-A spliced 35.490174 91.489786 63.48998 1.80270519 0.081463 16 100 SH6592 6592 snR47 snR47 66 85 44.298725 109.674652 76.9866885 1.886415639 -0.102435 16 101 SH15856 15856 YDL079C_4_314747_312950_INTRON_413_704 exon/intron 38.126463 136.971752 38.126463 99.845289 68.985876 1.838760183 -0.037248 16 102 SH12377 12377 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.591622 101.801805 26.591622 76.210183 51.4009025 1.710970744 -0.08651 16 103 SH7879 7879 snoRNA cluster1 snR73 30.952334 119.095653 30.952334 89.143319 60.0478265 1.778497292 -0.01551 16 104 SH18300 18300 YML073C_13_124172_123227_INTRON_16_430 intron 27.685389 98.322396 27.685389 71.637007 49.661198 1.696017192 0.050499 17 2 SH10437 10437 RUF8 RUF8 111 130 29.204885 84.893582 57.0492335 1.756249814 -0.017724 17 3 SH9864 9864 RUF5-1 RUF5-1 126 147 26.526179 77.815972 52.1710755 1.71742979 -0.111264 17 4 SH19603 19603 AEP2/ATP13 2.1 25.852042 76.854824 51.353433 1.710569482 -0.148913 17 5 SH13890 13890 MT COB intronic 27.323769 101.953036 27.323769 75.629267 51.476518 1.711609162 -0.026861 17 6 SH13356 13356 MT COX1 intronic 31.333916 116.30529 31.333916 85.971374 58.652645 1.768287602 0.056938 17 7 SH13259 13259 MT COX1 COX1-ai4 27.145409 96.801146 27.145409 70.655737 48.900573 1.689313948 0.025801 17 8 SH18797 18797 YNL301C_14_64561_63569_INTRON_113_544 intron 29.525591 119.821307 29.525591 91.295716 60.4106535 1.781113534 -0.115579 17 9 SH874 874 Glu2 3' flank 29.774544 101.719225 65.7468845 1.817875178 -0.283857 17 10 SH17112 17112 YHR001W-A_8_107819_108115_INTRON_7_69 3' exon 32.214983 128.454949 32.214983 97.239966 64.7274745 1.811088662 -0.125073 17 11 SH3986 3986 RNase MRP 3' 27.916191 68.104399 48.010295 1.681334375 0.115013 17 12 SH3111 3111 Ser4 5' flank 29.874461 83.921311 56.897886 1.755096131 0.030435 17 13 SH1236 1236 Ile1 3' flank 33.592422 89.320407 61.4564145 1.788567219 0.083221 17 14 SH15148 15148 MT tRNA Thr1 reverse complement tRNA 28.545635 109.340621 28.545635 81.794986 55.1703105 1.741705428 -0.022718 17 15 SH17486 17486 YJL024C_10_396288_395627_INTRON_23_99 intron 27.852823 116.172472 27.852823 89.319649 58.586236 1.767795597 -0.159789 17 16 SH14328 14328 MT VAR1 includes 5’ processing site VAR1 29.572041 112.440241 29.572041 83.8682 56.7201205 1.753737145 0.017796 17 17 SH9890 9890 RUF5-1 RUF5-1 256 275 34.448981 115.900962 75.1749715 1.876073272 -0.428268 17 18 SH15034 15034 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 61.771224 240.928375 61.771224 180.157151 120.9641875 2.082656813 -0.72491 17 19 SH16167 16167 YDR139C_4_733917_733611_INTRON_150_222 intron 26.954473 98.522297 26.954473 72.567824 49.7611485 1.696890395 -0.013415 17 20 SH2527 2527 Pro1 3' flank 29.630505 82.428061 56.029283 1.748415065 0.039844 17 21 SH21848 21848 copy of SH17383 28.985876 95.22932 62.107598 1.793144733 -0.205529 17 22 SH15952 15952 YDL130W_4_229906_230527_INTRON_115_415 5' exon 46.684472 143.792699 46.684472 98.108227 72.3963495 1.859716668 0.168572 17 23 SH19116 19116 YPL031C_16_493033_492014_INTRON_18_119 exon/intron 26.324172 101.039498 26.324172 75.715326 51.019749 1.707738318 -0.099726 17 24 SH13075 13075 MT COX1 COX1ai3 24.395606 97.150256 24.395606 73.75465 49.075128 1.690861441 -0.221074 17 25 SH6792 6792 snR50 3' 26.604891 71.559198 49.0820445 1.690922645 -0.025124 17 26 SH12072 12072 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7246 7264 28.376542 90.250602 59.313572 1.773154079 -0.150896 17 27 SH8963 8963 snR17a / U3a U3a 101 115 38.805572 106.899837 72.8527045 1.862445679 -0.163539 17 28 SH10783 10783 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 801 816 45.185456 105.863054 75.524255 1.87808645 -0.013703 17 29 SH10257 10257 RUF6 3' 29.854054 78.76965 54.311852 1.734894612 0.099459 17 30 SH19170 19170 YPL079W_16_406631_407534_INTRON_12_432 intron 27.701716 121.360393 27.701716 94.658677 61.1801965 1.786610868 -0.256881 17 31 SH20764 20764 YJR145C spliced 781.749637 788.777543 785.26359 2.895015461 -0.018187 17 32 SH1418 1418 Leu1 3' flank 43.248258 107.60857 75.428414 1.877534976 -0.08443 17 33 SH7765 7765 snoRNA cluster1 snR76 30.538524 120.145168 30.538524 90.606644 60.572584 1.782276101 -0.058712 17 34 SH11198 11198 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2876 2894 31.151855 87.871532 59.5116935 1.774602309 0.015319 17 35 SH9341 9341 RUF1 RUF1 281 298 31.419258 75.294705 53.3569815 1.727191253 0.240914 17 36 SH4408 4408 telomerase RNA telomerase 1076 1092 28.11995 73.716803 50.9183765 1.706874548 0.05303 17 37 SH14953 14953 MT tRNA Met tRNA / 3' 27.09516 106.210406 27.09516 80.115246 53.605203 1.729206945 -0.1002 17 38 SH17123 17123 YHR010W_8_126513_127484_INTRON_32_592 intron 82.599243 217.901233 82.599243 136.30199 109.4506165 2.039218212 0.092419 17 39 SH16128 16128 YDR064W_4_579453_580447_INTRON_22_560 intron 27.332993 122.024983 27.332993 95.69199 61.5124915 1.788963318 -0.291611 17 40 SH2424 2424 Phe4 3' flank 29.560378 86.2345 57.897439 1.762659354 -0.025774 17 41 SH21448 21448 copy of SH168 31.95892 94.929574 63.444247 1.802392247 -0.083064 17 42 SH6032 6032 snR37 snR37 76 95 27.578553 64.025684 45.8021185 1.660885566 0.15084 17 43 SH19366 19366 YPR028W_16_623522_624197_INTRON_52_184 intron 32.495148 117.404188 32.495148 85.90904 59.202094 1.772337068 0.106764 17 44 SH11108 11108 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2426 2439 5624.288518 3499.078942 4561.68373 3.659125172 0.218057 17 45 SH12145 12145 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7611 7628 27.623015 81.433158 54.5280865 1.736620258 -0.080183 17 46 SH16812 16812 YGL178W_7_167356_170575_INTRON_4_643 5' exon 27.461239 104.990269 27.461239 78.52903 52.9951345 1.724235999 -0.054892 17 47 SH10386 10386 RUF7 3' 34.184423 86.289026 60.2367245 1.779861348 0.167767 17 48 SH15766 15766 YCR097W_3_293828_294314_INTRON_106_159 5' exon 26.526826 94.495415 26.526826 68.968589 47.7477075 1.678952525 0.0046 17 49 SH6803 6803 snR52 5' 30.017504 79.980033 54.9987685 1.740352965 0.094479 17 50 SH10946 10946 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1616 1629 40.551663 93.099155 66.825409 1.824941626 0.157785 17 51 SH9810 9810 RUF4 3' 27.744379 84.331061 56.03772 1.748480457 -0.106933 17 52 SH11009 11009 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1931 1944 5153.795093 3531.873022 4342.834058 3.637773235 0.089578 17 53 SH514 514 Asp2 3' flank 28.856026 84.984408 56.920217 1.755266547 -0.040639 17 54 SH4349 4349 telomerase RNA telomerase 781 798 30.983592 93.367852 62.175722 1.793620837 -0.085786 17 55 SH5521 5521 snR32 3' 28.203861 76.500269 52.352065 1.718933817 0.02159 17 56 SH15109 15109 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " intronic 495.800197 758.068698 495.800197 263.268501 379.534349 2.579251087 1.150156 17 57 SH11890 11890 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6336 6353 146.767142 177.051683 161.9094125 2.209272097 0.296867 17 58 SH16542 16542 YER133W_5_432491_433954_INTRON_178_702 5' exon 29.669708 115.026853 29.669708 86.357145 58.0134265 1.763528517 -0.023032 17 59 SH9928 9928 RUF5-1 RUF5-1 446 463 30.232286 85.975043 58.1036645 1.764203523 0.008969 17 60 SH11078 11078 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2276 2293 1095.812237 834.498888 965.1555625 2.984597318 0.335492 17 61 SH5090 5090 snR11 snR11 51 67 27.353898 76.181361 51.7676295 1.714058279 -0.031883 17 62 SH8015 8015 snoRNA cluster 2 intergenic 27.238948 94.178453 27.238948 67.939505 47.5892265 1.677508646 0.070043 17 63 SH6940 6940 snR58 snR58 61 77 38.434144 103.81629 71.125217 1.852023604 -0.11108 17 64 SH6957 6957 snR58 3' 31.408307 81.180112 56.2942095 1.750463725 0.148821 17 65 SH15426 15426 YBL072C_2_89435_88518_INTRON_1_308 intron 26.859917 101.403552 26.859917 75.543635 51.201776 1.709285025 -0.058747 17 66 SH15457 15457 YBL087C_2_60732_59815_INTRON_43_546 intron 31.350444 124.098061 31.350444 93.747617 62.5490305 1.796220583 -0.076312 17 67 SH9062 9062 snR14 / U4 RNA 5' 29.185826 71.117262 50.151544 1.700284308 0.159127 17 68 SH18701 18701 YNL130C_14_381156_379555_INTRON_30_470 intron 27.16858 122.892208 27.16858 96.723628 61.946104 1.792013997 -0.316274 17 69 SH7887 7887 snoRNA cluster1 snR73/intergenic 27.220439 97.478349 27.220439 71.25791 49.2391745 1.692310763 0.022973 17 70 SH10366 10366 RUF7 RUF7 441 457 29.328251 94.35337 61.8408105 1.791275173 -0.175517 17 71 SH20217 20217 YDR064W spliced 26.813323 69.706872 48.2600975 1.683588195 0.01507 17 72 SH6411 6411 snR45 5' 26.807149 72.393512 49.6003305 1.69548457 -0.021662 17 73 SH16641 16641 YFR024C-A_6_203420_201947_INTRON_48_165 intron/exon 27.060708 104.713956 27.060708 78.653248 52.856978 1.72310233 -0.084158 17 74 SH1842 1842 Leu9 5' flank 31.958031 91.60389 61.7809605 1.790854656 -0.014835 17 75 SH14043 14043 MT COB Cytbi4 29.30281 114.404762 29.30281 86.101952 57.702381 1.761193734 -0.035108 17 76 SH9789 9789 RUF4 RUF4 721 742 40.39853 114.597706 77.498118 1.889291156 -0.270488 17 77 SH841 841 Glu2 5' flank 28.577209 88.124587 58.350898 1.766047544 -0.104587 17 78 SH15779 15779 YDL012C_4_431513_431104_INTRON_46_131 intron/exon 28.753585 104.623862 28.753585 76.870277 52.811931 1.722732047 0.053131 17 79 SH19822 19822 Negative Control 31.38681 91.260815 61.3238125 1.787629147 -0.03317 17 80 SH1701 1701 Leu6 tRNA 71 83 29.639907 89.094263 59.367085 1.773545725 -0.072648 17 81 SH10707 10707 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 421 437 34.82667 101.235183 68.0309265 1.832706386 -0.140243 17 82 SH5572 5572 snR33 snR33 146 165 27.806342 69.654349 48.7303455 1.687799491 0.085826 17 83 SH2614 2614 Pro3 tRNA 21 36 34.644848 85.647807 60.1463275 1.779209115 0.194849 17 84 SH7635 7635 snR189 3' 29.551409 73.71173 51.6315695 1.712915327 0.146707 17 85 SH18591 18591 YNL050C_14_534978_534075_INTRON_18_108 3' exon 30691.92677 48673.43454 30691.92677 17982.50777 24337.21727 4.386270919 -0.15849 17 86 SH14915 14915 MT tRNA Tyr tRNA 35.192432 120.261102 35.192432 86.06867 60.630551 1.782691515 0.198299 17 87 SH286 286 Arg4 26-40 26 40 32.129016 78.15938 55.144198 1.741499825 0.237848 17 88 SH21861 21861 copy of SH18011 29.543296 77.783069 53.6631825 1.729676425 0.092362 17 89 SH16881 16881 YGL189C_7_148970_148233_INTRON_1_368 exon/intron 38.863988 144.613224 38.863988 106.749236 72.806612 1.862170822 -0.159393 17 90 SH10156 10156 RUF6 RUF6 626 647 26.401457 71.559903 48.98068 1.69002481 -0.039916 17 91 SH8007 8007 snoRNA cluster 2 intergenic 24.329553 90.20373 24.329553 66.874177 45.601865 1.658982605 -0.128513 17 92 SH5070 5070 snR11 5' 27.800083 63.170154 45.4851185 1.65786933 0.179156 17 93 SH21341 21341 YPR098C spliced 28.406712 81.724862 55.065787 1.740881851 -0.031051 17 94 SH10305 10305 RUF7 RUF7 136 151 26.695768 93.698616 60.197192 1.779576233 -0.290618 17 95 SH923 923 Glu3 3' flank 24.074805 96.561584 60.3181945 1.780448333 -0.509831 17 96 SH13664 13664 MT ATP6 ATP6 21.482693 92.485237 21.482693 72.002544 46.7426185 1.669713038 -0.436207 17 97 SH8502 8502 snR19 / U1 RNA U1 6 24 36.005674 86.254104 61.129889 1.786253607 0.213455 17 98 SH16079 16079 YDR025W_4_491510_492319_INTRON_46_384 intron 31.875574 118.962493 31.875574 88.086919 59.9812465 1.778015487 0.04227 17 99 SH6121 6121 snR39B 5' 27.955716 77.191122 52.573419 1.720766221 -0.004062 17 100 SH1937 1937 Lys1 3' flank 32.893285 83.923512 58.4083985 1.766475298 0.159237 17 101 SH18568 18568 YNL012W_14_609682_611661_INTRON_106_189 intron 26.774725 103.215263 26.774725 77.440538 52.1076315 1.716901333 -0.088663 17 102 SH14064 14064 MT COB Cytbi4 31.617017 120.492406 31.617017 89.875389 60.746203 1.783519137 0.000275 17 103 SH5718 5718 snR34 snR34 511 530 26.175772 76.890383 51.5330775 1.712086079 -0.125391 17 104 SH4462 4462 telomerase RNA 3' 36.953162 104.714468 70.833815 1.850240633 -0.161179 18 2 SH6883 6883 snR56 snR56 46 63 29.059861 87.700504 58.3801825 1.766265448 -0.074708 18 3 SH12730 12730 MT COX1 Exon1 28.382258 104.815799 28.382258 77.433541 52.9078995 1.72352052 0.02133 18 4 SH9773 9773 RUF4 RUF4 641 658 29.620757 96.109291 62.865024 1.798409086 -0.190759 18 5 SH7129 7129 snR63 snR63 151 167 41.845829 107.908662 74.8772455 1.87434986 -0.118332 18 6 SH4496 4496 U3b (snR17b) U3b 36 56 26.740778 81.879086 54.309932 1.734879259 -0.14681 18 7 SH16995 16995 YGR118W_7_726968_727725_INTRON_66_385 intron 40.131516 131.3526 40.131516 92.221084 66.1763 1.820702482 0.168762 18 8 SH5462 5462 snR32 5' 29.586737 73.032439 51.309588 1.710198527 0.158227 18 9 SH7404 7404 snR69 5' 29.752811 85.529841 57.641326 1.760733963 -0.004397 18 10 SH15670 15670 YBR191W_2_606228_607098_INTRON_12_399 exon/intron 29.76878 100.842986 29.76878 72.074206 50.921493 1.706901129 0.183008 18 11 SH7168 7168 snR64 5' 32.017055 77.781261 54.899158 1.739565684 0.240678 18 12 SH2266 2266 Phe2 5' flank 26.474061 70.131716 48.3028885 1.683973102 -0.015282 18 13 SH17919 17919 YLR061W_12_263195_263949_INTRON_13_401 3' exon 29.208655 106.641462 29.208655 78.432807 53.820731 1.730949592 0.06257 18 14 SH421 421 Asp1 5' flank 30.27617 81.731798 56.003984 1.748218923 0.088953 18 15 SH4851 4851 snR8 snR8 36 52 41.404288 88.985683 65.1949855 1.814214193 0.268114 18 16 SH4563 4563 U3b (snR17b) U3b 371 387 47.225808 90.963604 69.094706 1.839444773 0.331817 18 17 SH9275 9275 RUF1 5' 25.82818 66.815142 46.321661 1.665784124 -0.015887 18 18 SH4027 4027 SRP RNA SRP RNA 26 42 27.614807 86.642661 57.128734 1.7568546 -0.142828 18 19 SH21837 21837 copy of SH16602 26.856222 69.359881 48.1080515 1.682217767 0.022938 18 20 SH20494 20494 YGL251C spliced 27.19719 80.916087 54.0566385 1.732849036 -0.103077 18 21 SH10001 10001 RUF5-1 3' 26.670047 85.649078 56.1595625 1.749423716 -0.19687 18 22 SH15130 15130 MT tRNA Phe tRNA 26.220306 89.70264 26.220306 64.482334 45.35132 1.656589932 0.048392 18 23 SH21850 21850 copy of SH17600 30.894118 88.140839 59.5174785 1.774644524 -0.000534 18 24 SH20392 20392 YFL039C spliced 29.068059 85.556965 57.312512 1.758249444 -0.03605 18 25 SH12969 12969 MT COX1 COX1ai2 26.811645 98.926554 26.811645 73.114909 49.963277 1.698650915 -0.030854 18 26 SH18286 18286 YML067C_13_140214_139063_INTRON_32_124 intron 28.506148 97.892885 28.506148 70.386737 49.4464425 1.694135051 0.123657 18 27 SH15724 15724 YBR255C-A_2_727032_726576_INTRON_64_157 intron 27.714546 105.056396 27.714546 78.34185 53.028198 1.724506869 -0.035202 18 28 SH194 194 Arg2 3' flank 25.265793 73.445208 49.3555005 1.69333556 -0.149543 18 29 SH1660 1660 Leu5 3' flank 29.937441 98.211536 64.0744885 1.806685148 -0.209999 18 30 SH7313 7313 snR66 snR66 56 70 62.547242 130.340785 96.4440135 1.984275275 -0.115814 18 31 SH8901 8901 LSR1 / U2 RNA U2 1146 1161 44.232233 81.573926 62.9030795 1.798671907 0.501852 18 32 SH6862 6862 snR56 5' 26.289018 63.230948 44.759983 1.650889913 0.073199 18 33 SH316 316 Arg5 5' flank 26.940297 87.798058 57.3691775 1.758678623 -0.202685 18 34 SH12062 12062 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7196 7213 27.124376 91.761766 59.443071 1.774101238 -0.236987 18 35 SH9082 9082 snR14 / U4 RNA U4 26 42 40.783663 103.005599 71.894631 1.856696459 -0.046049 18 36 SH6231 6231 snR42 5' 26.470556 79.851127 53.1608415 1.725591847 -0.140837 18 37 SH155 155 Arg1 3' flank 28.691433 88.153512 58.4224725 1.766579933 -0.099756 18 38 SH16510 16510 YER117W_5_396765_397649_INTRON_43_513 intron 29.19619 108.906285 29.19619 80.710095 54.9531425 1.739992533 0.033109 18 39 SH14195 14195 MT COB Exon6 27.433447 99.188271 27.433447 72.754824 50.0941355 1.699786886 0.018036 18 40 SH17582 17582 YJL191W_10_73786_74610_INTRON_11_418 intron 32.373215 119.383378 32.373215 88.010163 60.191689 1.77953653 0.064353 18 41 SH2952 2952 Ser1 5' flank - tRNA9 9 27.734337 76.448387 52.091362 1.716765713 -0.009362 18 42 SH20102 20102 YDL061C spliced 30.242338 87.943475 59.0929065 1.771535351 -0.025605 18 43 SH6901 6901 snR56 3' 27.920775 86.089171 57.004973 1.755912744 -0.11565 18 44 SH9993 9993 RUF5-1 771-775 + 3' 771 31.431299 94.380013 62.905656 1.798689696 -0.085503 18 45 SH9754 9754 RUF4 RUF4 546 558 32.406241 89.22749 60.8168655 1.784024033 0.044467 18 46 SH19738 19738 Negative Control 34.347825 106.919191 70.633508 1.849010776 -0.26431 18 47 SH21839 21839 copy of SH17169 31.436535 95.551337 63.493936 1.80273225 -0.110407 18 48 SH771 771 Gln4 3' flank 75.694835 132.959696 104.3272655 2.018397824 0.044034 18 49 SH939 939 Gly1 5' flank 25.689756 72.376936 49.033346 1.69049153 -0.103436 18 50 SH16584 16584 YFL034C-A_6_64931_64242_INTRON_13_333 exon/intron 32.224943 115.40525 32.224943 84.180307 58.202625 1.764942572 0.127036 18 51 SH1336 1336 Ile3 tRNA-intron 61 75 35.204249 98.410534 66.8073915 1.824824515 -0.073528 18 52 SH2919 2919 Pro8 3' flank 26.844142 79.764942 53.304542 1.726764216 -0.11335 18 53 SH8033 8033 snoRNA cluster 2 snR55 36.187895 129.414895 36.187895 94.227 65.2074475 1.8142972 0.038241 18 54 SH6390 6390 snR43 191-209 + 3' 191 26.269772 69.980467 48.1251195 1.682371821 -0.028129 18 55 SH1187 1187 His1 3' flank 33.955302 92.127112 63.041207 1.79962452 0.029578 18 56 SH16564 16564 YER133W_5_432491_433954_INTRON_178_702 intron 37.386047 129.130457 37.386047 92.74441 65.0652285 1.813348959 0.098287 18 57 SH12632 12632 MT_15S MT_15S 24.362244 85.728347 24.362244 62.366103 43.3641735 1.637131073 -0.05508 18 58 SH9080 9080 snR14 / U4 RNA U4 16 33 40.678716 112.797397 76.7380565 1.885010796 -0.232447 18 59 SH20174 20174 YDL137W spliced 32.744022 103.288313 68.0161675 1.832612157 -0.233686 18 60 SH10276 10276 RUF7 5' - 7 -9 7 29.184509 87.674657 58.429583 1.766632787 -0.068524 18 61 SH992 992 Gly2 5' flank 27.248138 70.871854 49.059996 1.690727508 0.030145 18 62 SH2093 2093 Lys4 3' flank 29.351929 76.781332 53.0666305 1.724821513 0.093096 18 63 SH1597 1597 Leu4 3' flank 29.109815 94.231596 61.6707055 1.790078917 -0.183525 18 64 SH3479 3479 Tyr1 5' flank 28.969098 85.719201 57.3441495 1.758489116 -0.043545 18 65 SH17656 17656 YKL002W_11_437416_438182_INTRON_61_128 5' exon 33.099078 129.648946 33.099078 97.549868 65.324473 1.815075915 -0.108394 18 66 SH4206 4206 telomerase RNA telomerase 66 87 28.003318 68.612921 48.3081195 1.684020132 0.113876 18 67 SH21202 21202 YOL127W spliced 39.194124 98.428119 68.8111215 1.837658636 0.014961 18 68 SH21284 21284 YPL143W spliced 28.291262 77.857608 53.074435 1.72488538 0.009811 18 69 SH9628 9628 RUF4 5' 32.912187 83.702743 58.307465 1.76572416 0.16408 18 70 SH2956 2956 Ser1 tRNA 11 25 1040.461929 1801.898559 1421.180244 3.152649162 -0.939686 18 71 SH3469 3469 Trp1 3' flank 41.763537 98.831009 70.297273 1.846938478 0.058778 18 72 SH605 605 Gln1 66-72 + 3' flank 66 3' flank 37.58247 88.209394 62.895932 1.798622557 0.204571 18 73 SH6389 6389 snR43 snR43 186 202 35.950127 96.537791 66.243959 1.82114628 -0.016592 18 74 SH11484 11484 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4306 4321 65.132502 116.797256 90.964879 1.958873746 0.132033 18 75 SH18785 18785 YNL301C_14_64561_63569_INTRON_113_544 exon/intron 29.084769 100.170251 29.084769 72.085482 50.5851255 1.704022832 0.139053 18 76 SH10884 10884 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1306 1321 34289.43898 18197.28164 26243.36031 4.419019443 -0.032426 18 77 SH2306 2306 Phe2 3' flank 32.693608 78.585316 55.639462 1.745382922 0.252756 18 78 SH13878 13878 MT COB intronic 28.095255 97.169434 28.095255 70.074179 49.084717 1.690946291 0.099966 18 79 SH21199 21199 YOL121C spliced 37.312096 99.76833 68.540213 1.83594545 -0.053422 18 80 SH13653 13653 MT ATP6 ATP6 26.623884 96.032114 26.623884 70.40823 48.516057 1.685885498 -0.008191 18 81 SH7342 7342 snR68 5' 29.473503 69.543703 49.508603 1.694680672 0.199487 18 82 SH16639 16639 YFR024C-A_6_203420_201947_INTRON_48_165 intron 29.73384 123.810836 29.73384 95.076996 62.405418 1.795222296 -0.168954 18 83 SH2309 2309 Phe2 3' flank 27.326147 80.468261 53.897204 1.731566236 -0.088608 18 84 SH15816 15816 YDL061C_4_341182_340627_INTRON_1_408 3' exon 31.638825 126.737148 31.638825 96.098323 63.868574 1.80528722 -0.116516 18 85 SH19674 19674 SIR1 2.4 28.827516 81.433891 55.1307035 1.741393534 0.000227 18 86 SH17175 17175 YHR021C_8_148660_147862_INTRON_4_553 intron 107.467087 270.850955 107.467087 164.383868 135.9254775 2.133300867 0.054846 18 87 SH3930 3930 RNase MRP RNaseMRP 66 83 27.612892 63.532641 45.5727665 1.658705393 0.160655 18 88 SH3050 3050 Ser3 5' flank 27.338738 84.619526 55.979132 1.74802616 -0.138103 18 89 SH11997 11997 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6871 6884 38.84568 91.795405 65.3205425 1.815049783 0.151512 18 90 SH1474 1474 Leu2 3' flank 27.11019 88.717442 57.913816 1.762782182 -0.20127 18 91 SH2668 2668 Pro4 tRNA 6 22 98.98992 217.253506 158.121713 2.198991511 -0.518522 18 92 SH14632 14632 MT 21S rRNA Sce1 endonuc 29.149426 98.234369 29.149426 70.084943 49.6171845 1.695632117 0.170755 18 93 SH19704 19704 Negative Control 61.209656 107.27231 84.240983 1.925523426 0.234782 18 94 SH8074 8074 snoRNA cluster 2 snR61 31.653042 116.399356 31.653042 85.746314 58.699678 1.768635719 0.074555 18 95 SH8551 8551 snR19 / U1 RNA U1 251 263 34.059706 78.889207 56.4744565 1.75185206 0.301574 18 96 SH17519 17519 YJL136C_10_156971_156248_INTRON_25_484 intron 33.804009 119.422444 33.804009 86.618435 60.211222 1.779677441 0.146895 18 97 SH13645 13645 MT ATP6 ATP6 26.421161 107.113431 26.421161 81.69227 54.0567155 1.732849654 -0.167179 18 98 SH8645 8645 snR19 / U1 RNA 3' 29.795484 79.9722 54.883842 1.739444505 0.080589 18 99 SH50 50 Ala1 3' flank 27.833386 75.7339 51.783643 1.7141926 0.006757 18 100 SH8014 8014 snoRNA cluster 2 intergenic 30.077206 104.941903 30.077206 75.864697 52.9709515 1.724037774 0.151112 18 101 SH600 600 Gln1 tRNA 41 55 32.092544 93.267348 62.679946 1.797128614 -0.043626 18 102 SH6153 6153 snR39B 3' 29.703465 90.230112 59.9667885 1.777910791 -0.089378 18 103 SH18378 18378 YMR116C_13_500687_499455_INTRON_538_810 intron 24.907814 88.18544 24.907814 64.277626 44.59272 1.649263964 -0.044363 18 104 SH5115 5115 snR11 snR11 176 196 39.461329 99.474328 69.4678285 1.841783723 -0.001257 19 2 SH11322 11322 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3496 3513 30299.46509 14797.46286 22548.46398 4.353116963 0.132532 19 3 SH13132 13132 MT COX1 COX1ai3 27.735797 106.732512 27.735797 79.996715 53.866256 1.731316791 -0.054687 19 4 SH19999 19999 YBR078W spliced 42.351959 92.21378 67.2828695 1.827904505 0.213233 19 5 SH6966 6966 snR60 5' 35.29382 81.499267 58.3965435 1.766387142 0.298858 19 6 SH19567 19567 AEP2/ATP13 0.6 29.158926 71.07179 50.115358 1.699970837 0.157965 19 7 SH10881 10881 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1291 1306 771.759408 691.253507 731.5064575 2.864218164 0.173532 19 8 SH19254 19254 YPL129W_16_305297_306136_INTRON_10_114 3' exon 29.95189 133.193416 29.95189 104.241526 67.096708 1.826701213 -0.328521 19 9 SH17495 17495 YJL041W_10_365480_368069_INTRON_2_119 intron 27.611174 108.804777 27.611174 82.193603 54.9023885 1.739591239 -0.090297 19 10 SH726 726 Gln4 5' flank 29.515662 100.697963 65.1068125 1.813626434 -0.27083 19 11 SH7684 7684 snoRNA cluster1 intergenic 31.612027 131.355439 31.612027 100.743412 66.1777195 1.820711797 -0.213098 19 12 SH1165 1165 His1 tRNA 46 60 367.311584 375.915747 371.6136655 2.570091676 0.194005 19 13 SH10111 10111 RUF6 RUF6 401 417 27.122714 87.319786 57.22125 1.757557341 -0.184501 19 14 SH12725 12725 MT COX1 5' / exon1 28.543811 122.792814 28.543811 95.249003 61.896407 1.79166544 -0.226418 19 15 SH12079 12079 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7281 7299 29.678895 112.826846 71.2528705 1.852802365 -0.497061 19 16 SH18750 18750 YNL162W_14_331319_332151_INTRON_5_516 intron 31.433822 139.935362 31.433822 109.50154 70.467681 1.84798998 -0.38721 19 17 SH2136 2136 Met1 66-73 + 3' flank 66 28.229681 67.350196 47.7899385 1.679336472 0.147204 19 18 SH12149 12149 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7631 7648 90.482618 147.164066 118.823342 2.074901763 0.054213 19 19 SH19839 19839 Negative Control 33.437611 93.459263 63.448437 1.802420928 -0.012707 19 20 SH9114 9114 snR14 / U4 RNA 3' 31.472893 82.685283 57.079088 1.756477025 0.123151 19 21 SH11543 11543 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4601 4617 17053.37197 10680.49814 13866.93505 4.141980481 -0.102669 19 22 SH6446 6446 snR45 snR45 76 92 37.480667 84.806311 61.143489 1.786350217 0.282145 19 23 SH10412 10412 RUF8 5' - 5 -14 5 30.714324 92.444141 61.5792325 1.789434272 -0.082088 19 24 SH2414 2414 Phe4 3' flank 28.664108 77.810515 53.2373115 1.726216115 0.035086 19 25 SH3866 3866 RNaseP RNaseP 296 312 33.08557 84.217285 58.6514275 1.768278587 0.161632 19 26 SH13255 13255 MT COX1 COX1-ai4 25.873686 93.421403 25.873686 68.547717 47.2107015 1.674040454 -0.037537 19 27 SH6300 6300 snR42 snR42 281 297 29.641797 78.940373 54.291085 1.734728521 0.083847 19 28 SH11060 11060 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2186 2204 36.109456 87.52805 61.818753 1.79112024 0.186142 19 29 SH15286 15286 MT 9S rRNA 9S 27.999903 100.142064 27.999903 73.142161 50.571032 1.703901816 0.0523 19 30 SH15721 15721 YBR255C-A_2_727032_726576_INTRON_64_157 intron 26.471835 103.159743 26.471835 77.687908 52.0798715 1.716669904 -0.113633 19 31 SH17252 17252 YHR097C_8_298611_297387_INTRON_126_249 intron 26.94553 132.387493 26.94553 106.441963 66.6937465 1.824085114 -0.475418 19 32 SH11593 11593 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4851 4864 1186.602873 768.068942 977.3359075 2.990043855 0.570435 19 33 SH6316 6316 snR42 3' 28.041248 67.745638 47.893443 1.680276059 0.128689 19 34 SH18685 18685 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.939043 102.633175 27.939043 75.694132 51.8165875 1.714468808 0.014422 19 35 SH5740 5740 snR34 3' 56.979869 120.583483 88.781676 1.948323339 -0.059682 19 36 SH824 824 Glu1 3' flank 28.446068 74.063989 51.2550285 1.709736479 0.070106 19 37 SH3802 3802 RNaseP 5' flank 50.821738 117.438796 84.130267 1.924952267 -0.117037 19 38 SH1403 1403 Leu1 tRNA 86 102 303.326372 509.069086 406.197729 2.608737491 -0.538369 19 39 SH3944 3944 RNase MRP RNaseMRP 136 157 26.857419 67.204827 47.031123 1.672385349 0.053311 19 40 SH16087 16087 YDR025W_4_491510_492319_INTRON_46_384 intron 27.394326 101.705269 27.394326 75.310943 51.3526345 1.710562729 -0.017847 19 41 SH988 988 Gly2 5' flank 77.330157 128.324527 102.827342 2.01210861 0.131756 19 42 SH20808 20808 YKL186C spliced 30.176247 99.04614 64.6111935 1.810307763 -0.218325 19 43 SH14824 14824 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly 30.146818 110.504743 30.146818 81.357925 55.7523715 1.746263345 0.085476 19 44 SH16432 16432 YER074W_5_306319_307192_INTRON_4_469 intron 27.792311 100.556952 27.792311 73.764641 50.778476 1.705679662 0.029837 19 45 SH16036 16036 YDL191W_4_117665_118518_INTRON_4_494 intron 27.669519 109.398218 27.669519 82.728699 55.199109 1.741932068 -0.092817 19 46 SH13948 13948 MT COB Cytbi3 27.236984 95.307781 27.236984 69.070797 48.1538905 1.682631381 0.054057 19 47 SH14488 14488 MT 21S rRNA 21S rRNA3 26.639288 93.809414 26.639288 68.170126 47.404707 1.675821467 0.023921 19 48 SH13494 13494 MT COX1 Exon 5g / intronic 32.876925 119.297468 32.876925 87.420543 60.148734 1.779226491 0.095416 19 49 SH16655 16655 YFR031C-A_6_221405_220494_INTRON_5_151 3' exon 38.243432 125.427705 38.243432 88.184273 63.2138525 1.800812259 0.22005 19 50 SH12587 12587 MT_15S MT_15S 26.218642 96.951097 26.218642 71.732455 48.9755485 1.689979309 -0.055609 19 51 SH14706 14706 MT tRNA thr2 tRNA / 3' 26.955613 104.549682 26.955613 78.594069 52.774841 1.722426934 -0.090736 19 52 SH3963 3963 RNase MRP RNaseMRP 231 247 27.52933 77.418662 52.473996 1.719944138 -0.035968 19 53 SH20941 20941 YLR426W spliced 28.519962 73.569719 51.0448405 1.707951851 0.081698 19 54 SH14889 14889 MT tRNA Ala 3' 26.374606 95.560831 26.374606 70.186225 48.2804155 1.683770999 -0.023276 19 55 SH7202 7202 snR64 snR64 76 90 33.686342 91.953844 62.820093 1.798098575 0.026603 19 56 SH10469 10469 RUF8 RUF8 271 292 36.924295 92.803396 64.8638455 1.812002693 0.086373 19 57 SH11381 11381 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3791 3808 38369.32141 17616.56238 27992.94189 4.447048543 0.165676 19 58 SH8698 8698 LSR1 / U2 RNA U2 131 146 73.431883 135.800833 104.616358 2.019599597 -0.026542 19 59 SH3265 3265 Thr2 5' flank 28.617161 75.712152 52.1646565 1.717376352 0.059369 19 60 SH14201 14201 MT COB exon6/3' 26.997571 105.514382 26.997571 79.516811 53.257191 1.726378256 -0.099492 19 61 SH20340 20340 YER093C-A spliced 31.746262 98.819508 65.282885 1.814799339 -0.170321 19 62 SH19889 19889 Positive Control 5 40.901472 102.527585 71.7145285 1.855607147 -0.034124 19 63 SH15448 15448 YBL087C_2_60732_59815_INTRON_43_546 intron 29.177289 107.673312 29.177289 79.496023 54.336656 1.735092907 0.047064 19 64 SH4249 4249 telomerase RNA telomerase 281 302 26.657085 66.58888 46.6229825 1.668600052 0.047728 19 65 SH2010 2010 Lys3 5' flank - tRNA12 12 28.037536 63.964948 46.001242 1.662769557 0.183538 19 66 SH21132 21132 YNL147W spliced 85.781808 128.472438 107.127123 2.029899442 0.240246 19 67 SH8725 8725 LSR1 / U2 RNA U2 266 278 60.253557 116.903495 88.578526 1.947328449 0.053346 19 68 SH19875 19875 Negative Control 29.692381 71.430193 50.561287 1.70381812 0.187153 19 69 SH10383 10383 RUF7 3' 29.957999 88.3022 59.1300995 1.77180861 -0.044546 19 70 SH10565 10565 RUF8 RUF8 751 763 32.139645 88.737879 60.438762 1.78131556 0.041923 19 71 SH8918 8918 LSR1 / U2 RNA 3' 28.04587 93.054601 60.5502355 1.782115837 -0.213916 19 72 SH15133 15133 MT tRNA Phe 3' 26.449675 89.989745 26.449675 64.54007 45.4948725 1.657962452 0.063763 19 73 SH15655 15655 YBR189W_2_604466_605466_INTRON_8_420 intron 31.674534 123.379669 31.674534 92.705135 62.1898345 1.793719401 -0.045248 19 74 SH20192 20192 YDL219W spliced 27.269086 71.389796 49.329441 1.693106194 0.024638 19 75 SH279 279 Arg4 5' flank - tRNA6 5' flank 6 26.913912 85.096447 56.0051795 1.748228194 -0.173239 19 76 SH10577 10577 RUF8 RUF8 811 828 33.141849 74.744509 53.943179 1.731936537 0.348498 19 77 SH20741 20741 YJL191W spliced 25.824938 70.35547 48.090204 1.682056619 -0.066147 19 78 SH11132 11132 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2546 2563 110.417866 138.188976 124.303421 2.094483081 0.388079 19 79 SH21609 21609 copy of SH7090 29.873058 74.618206 52.245632 1.718049987 0.154867 19 80 SH5529 5529 snR33 5' 28.341162 85.548981 56.9450715 1.755456143 -0.08119 19 81 SH15945 15945 YDL125C_4_239605_239018_INTRON_98_208 intron 33.569115 134.019045 33.569115 101.44993 67.5095225 1.829365036 -0.175947 19 82 SH12657 12657 MT_15S MT_15S 26.994056 95.164265 26.994056 69.170209 48.0821325 1.681983721 0.035424 19 83 SH5732 5732 snR34 3' 29.296704 73.253728 51.275216 1.709907499 0.136637 19 84 SH201 201 Arg2 3' flank 31.447251 84.042356 57.7448035 1.761512908 0.096876 19 85 SH9160 9160 snR7 U5 RNA U5 71 88 31.159487 102.806041 66.982764 1.825963064 -0.266578 19 86 SH18309 18309 YML073C_13_124172_123227_INTRON_16_430 intron 28.418216 102.735676 28.418216 75.31746 51.867838 1.714898146 0.051457 19 87 SH10164 10164 RUF6 RUF6 666 680 39.289662 96.698954 67.994308 1.832472558 0.053522 19 88 SH21857 21857 copy of SH17802 65.725927 116.327894 91.0269105 1.959169803 0.148659 19 89 SH6582 6582 snR47 snR47 16 32 27.763923 72.389699 50.076811 1.699636664 0.045924 19 90 SH6954 6954 snR58 3' 25.582879 67.478068 46.5304735 1.667737472 -0.043758 19 91 SH19765 19765 Negative Control 33.686853 87.559529 60.623191 1.782638792 0.125531 19 92 SH20550 20550 YGR225W spliced 36.507957 165.385909 100.946933 2.004093129 -1.093912 19 93 SH2051 2051 Lys4 5' flank 30.721004 91.942526 61.331765 1.787685463 -0.07338 19 94 SH3897 3897 RNase MRP 5' 28.999181 90.261413 59.630297 1.775466972 -0.122031 19 95 SH19152 19152 YPL075W_16_412249_415357_INTRON_9_759 intron 126.79302 252.846669 126.79302 127.053649 126.9233345 2.103541473 0.69215 19 96 SH15325 15325 YAL003W_1_142172_143158_INTRON_81_446 intron 24.843115 90.684091 24.843115 66.840976 45.8420455 1.661263988 -0.088964 19 97 SH14308 14308 MT VAR1 includes 5’ processing site VAR1 27.523112 104.590379 27.523112 78.067267 52.7951895 1.722594353 -0.044747 19 98 SH18959 18959 YOL127W_15_80347_81189_INTRON_14_427 intron 28.714704 110.814218 28.714704 83.099514 55.907109 1.747467035 -0.027433 19 99 SH8202 8202 snoRNA cluster 3; intergenic 36.852805 130.683948 36.852805 94.831143 65.841974 1.818502843 0.040825 19 100 SH11818 11818 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5976 5994 59.063752 163.957929 111.5108405 2.047317089 -0.600676 19 101 SH4327 4327 telomerase RNA telomerase 671 690 131.314714 197.433567 164.3741405 2.215833495 -0.020255 19 102 SH16829 16829 YGL178W_7_167356_170575_INTRON_4_643 intron 32.942689 116.72047 32.942689 84.777781 58.860235 1.769821992 0.145578 19 103 SH11752 11752 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5646 5664 245.514006 401.29287 323.403438 2.509744632 -0.423498 19 104 SH4412 4412 telomerase RNA telomerase 1096 1113 33.809988 84.393513 59.1017505 1.771600344 0.187387 20 2 SH9573 9573 RUF3 RUF3 251 267 27.230785 77.132999 52.181892 1.717519822 -0.052812 20 3 SH12355 12355 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.99244 95.371763 24.99244 71.379323 48.1858815 1.682919808 -0.143114 20 4 SH12701 12701 MT ORF 8 (hypothetical) ORF8 24.989979 92.112553 24.989979 68.122574 46.5562765 1.667978239 -0.097247 20 5 SH2701 2701 Pro4 3' flank 27.346735 79.147536 53.2471355 1.726296249 -0.07062 20 6 SH19827 19827 Negative Control 27.876605 73.626479 50.751542 1.705449242 0.037468 20 7 SH3015 3015 Ser2 tRNA 36 53 28.374894 72.333726 50.35431 1.702036649 0.088586 20 8 SH12521 12521 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.411615 96.459935 28.411615 69.04832 48.7299675 1.687796122 0.135682 20 9 SH11375 11375 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3761 3778 5472.864223 2987.443144 4230.153684 3.626356146 0.432914 20 10 SH8860 8860 LSR1 / U2 RNA U2 941 955 43.077293 88.976036 66.0266645 1.819719358 0.300928 20 11 SH5331 5331 snR30 snR30 506 522 27.208025 65.768179 46.488102 1.667341815 0.099024 20 12 SH15170 15170 MT tRNA Val 3' 31.479189 119.572528 31.479189 89.093339 60.286264 1.780218371 0.007948 20 13 SH11860 11860 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6186 6202 24320.17008 11636.1625 17978.16629 4.254745393 0.225133 20 14 SH6143 6143 snR39B snR39B 56 75 29.293068 67.447105 48.3700865 1.684576864 0.217035 20 15 SH20397 20397 YFR024C-A spliced 28.787451 77.504257 53.145854 1.72546939 0.047125 20 16 SH15978 15978 YDL136W_4_217600_218367_INTRON_4_408 intron 30.661339 110.009006 30.661339 80.347667 55.504503 1.744328218 0.129873 20 17 SH20230 20230 YDR139C spliced 33.444291 97.044245 65.244268 1.814542363 -0.088973 20 18 SH7718 7718 snoRNA cluster1 snR77 32.425073 106.139586 32.425073 74.714513 53.569793 1.728919968 0.308031 20 19 SH7165 7165 snR63 3' 28.711333 79.516348 54.1138405 1.733308357 0.016475 20 20 SH10957 10957 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1671 1689 128.124415 147.155398 137.6399065 2.138744369 0.450551 20 21 SH311 311 Arg4 3' flank 30.682829 90.937948 60.8103885 1.783977778 -0.058049 20 22 SH12356 12356 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.15168 106.183433 28.15168 79.031753 53.5917165 1.729097667 -0.014494 20 23 SH15994 15994 YDL136W_4_217600_218367_INTRON_4_408 3' exon 28.156677 113.446282 28.156677 86.289605 57.223141 1.757571693 -0.102126 20 24 SH21413 21413 Ser3 spliced 30.264992 79.256815 54.7609035 1.738470605 0.119044 20 25 SH19350 19350 YPL249C-A_16_76239_75699_INTRON_17_254 intron 29.916506 116.915857 29.916506 87.999351 58.9579285 1.770542216 -0.041086 20 26 SH11083 11083 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2301 2319 19041.74997 13469.13026 16255.44011 4.210998732 -0.325382 20 27 SH2671 2671 Pro4 tRNA 21 36 33.499253 76.148148 54.8237005 1.738968346 0.334073 20 28 SH3976 3976 RNase MRP RNaseMRP 296 311 35.920046 103.307624 69.613835 1.84269556 -0.156609 20 29 SH6670 6670 snR48 3' 28.087265 83.212912 55.6500885 1.745465859 -0.070426 20 30 SH21660 21660 copy of SH9190 29.110687 68.60049 48.8555885 1.688914249 0.188737 20 31 SH5049 5049 snR10 3' 31.110298 89.887883 60.4990905 1.781748846 -0.021564 20 32 SH1986 1986 Lys2 3' flank 28.164954 73.953599 51.0592765 1.708074657 0.052887 20 33 SH171 171 Arg2 5' flank 28.525209 80.623397 54.574303 1.736988198 -0.009622 20 34 SH14540 14540 MT 21S rRNA 21S rRNA3 28.358671 96.27415 28.358671 68.915479 48.637075 1.686967449 0.133938 20 35 SH17537 17537 YJL177W_10_90783_91654_INTRON_310_626 intron 27.566518 92.235889 27.566518 65.669371 46.6179445 1.66855312 0.125676 20 36 SH12641 12641 MT_15S MT_15S 26.455995 95.75033 26.455995 70.294335 48.375165 1.684622459 -0.01882 20 37 SH5876 5876 snR35 3' 36.828638 91.68321 64.255924 1.807913173 0.108816 20 38 SH8965 8965 snR17a / U3a U3a 111 130 25.594656 78.488115 52.0413855 1.71634885 -0.188362 20 39 SH8776 8776 LSR1 / U2 RNA U2 521 537 28.3001 71.721035 50.0105675 1.699061783 0.091666 20 40 SH801 801 Glu1 tRNA 21 37 33.612952 93.283171 63.4480615 1.802418358 -0.004407 20 41 SH14657 14657 MT 21S rRNA 21S rRNA4 27.242998 115.117459 27.242998 88.874461 58.0587295 1.763867528 -0.193832 20 42 SH16229 16229 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.623905 107.787662 29.623905 79.163757 54.393831 1.735549648 0.07988 20 43 SH9937 9937 RUF5-1 RUF5-1 491 507 29.405838 88.392952 58.899395 1.770110834 -0.071034 20 44 SH378 378 Asn1 5' flank 27.138137 66.245993 46.692065 1.669243081 0.087125 20 45 SH19623 19623 RNA14 1.1 27.223445 67.020208 47.1218265 1.673222116 0.08202 20 46 SH21855 21855 copy of SH17800 26.999441 68.359749 47.679595 1.678332558 0.047118 20 47 SH6195 6195 snR40 snR40 36 51 40.456055 95.009645 67.73285 1.83079935 0.113944 20 48 SH7642 7642 snoRNA cluster1 5' 26.34488 104.868705 26.34488 79.523825 52.9343525 1.723737605 -0.145692 20 49 SH5954 5954 snR36 snR36 226 243 28.602247 91.494898 60.0485725 1.778502688 -0.161475 20 50 SH10860 10860 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1186 1204 38.288987 77.898571 58.093779 1.764129628 0.472913 20 51 SH12885 12885 MT COX1 COX1ai1 27.521266 114.211934 27.521266 87.690668 57.605967 1.760467471 -0.161259 20 52 SH19633 19633 RNA14 2.2 30.252411 85.236572 57.7444915 1.761510561 0.023204 20 53 SH18504 18504 YMR194W_13_651144_651909_INTRON_17_479 intron 27.457248 110.196548 27.457248 83.7393 55.598274 1.745061309 -0.119484 20 54 SH2016 2016 Lys3 tRNA-exon/intron 26 41 26.365485 71.817692 49.0915885 1.691007085 -0.045992 20 55 SH62 62 Ala2 5' flank 31.674962 89.928619 60.8017905 1.783916369 0.00181 20 56 SH21579 21579 copy of SH5868 30.922607 92.527318 61.7249625 1.790460835 -0.074434 20 57 SH3902 3902 RNase MRP 5' 31.374227 72.172449 51.773338 1.714106166 0.280614 20 58 SH4391 4391 telomerase RNA telomerase 991 1010 28.002321 71.340233 49.671277 1.696105325 0.076403 20 59 SH15037 15037 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.521662 94.468373 26.521662 68.946711 47.7341865 1.678829526 0.00453 20 60 SH10691 10691 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 341 359 29.208443 76.550061 52.879252 1.723285303 0.086883 20 61 SH3576 3576 Tyr2 3' flank 27.075598 65.345261 46.2104295 1.664740005 0.095819 20 62 SH21457 21457 copy of SH553 27.120498 69.898937 48.5097175 1.685828745 0.034367 20 63 SH7068 7068 snR62 3' 29.421523 82.529735 55.975629 1.747998982 0.025273 20 64 SH3352 3352 Thr3 3' flank 31.343603 91.977947 61.660775 1.790008979 -0.047122 20 65 SH5911 5911 snR36 snR36 11 32 27.928005 88.7699 58.3489525 1.766033064 -0.14663 20 66 SH10210 10210 RUF6 RUF6 896 908 53.284135 112.060138 82.6721365 1.917359161 0.018646 20 67 SH20613 20613 YHR079C-A spliced 33.247312 95.283801 64.2655565 1.807978273 -0.056846 20 68 SH20096 20096 YDL029W spliced 27.569967 72.991331 50.280649 1.701400875 0.024481 20 69 SH13551 13551 MT COX1 intronic 30.088319 113.514759 30.088319 84.42644 57.2573795 1.757831468 0.030699 20 70 SH9077 9077 snR14 / U4 RNA U4 1 15 34.574254 102.361197 68.4677255 1.835485901 -0.169044 20 71 SH16958 16958 YGR029W_7_543547_544199_INTRON_87_169 intron/exon 28.367312 96.346037 28.367312 68.978725 48.6730185 1.68728828 0.133644 20 72 SH19543 19543 CBP1 1.2 26.804704 75.268745 51.0367245 1.707882794 -0.059212 20 73 SH7299 7299 snR66 5' - 7 -14 7 27.257622 89.586771 58.4221965 1.766577881 -0.200814 20 74 SH12868 12868 MT COX1 COX1ai1 27.24292 104.470518 27.24292 78.227598 52.735259 1.722101083 -0.066081 20 75 SH15104 15104 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 26.805128 98.815845 26.805128 73.010717 49.9079225 1.698169492 -0.029954 20 76 SH18554 18554 YMR230W_13_732413_733140_INTRON_53_462 3' exon 35.437097 122.933415 35.437097 88.496318 61.9667075 1.792158421 0.147736 20 77 SH17166 17166 YHR016C_8_138446_136872_INTRON_48_215 intron 28.142016 119.935234 28.142016 92.793218 60.467617 1.781522854 -0.204984 20 78 SH19820 19820 Negative Control 34.284527 82.16061 58.2225685 1.765091361 0.247523 20 79 SH2739 2739 Pro5 tRNA 76 88 47.798928 106.314468 77.056698 1.886810395 0.026419 20 80 SH13444 13444 MT COX1 intronic 25.978108 119.506723 25.978108 94.528615 60.2533615 1.779981281 -0.345163 20 81 SH3568 3568 Tyr2 3' flank 28.714287 76.87969 52.7969885 1.722609151 0.050431 20 82 SH2180 2180 Met2 tRNA 31 47 35.752501 98.107757 66.930129 1.825621662 -0.054062 20 83 SH1031 1031 Gly2 3' flank 28.892665 80.409485 54.651075 1.737598709 0.017155 20 84 SH15065 15065 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.966953 112.812844 28.966953 84.845891 56.906422 1.75516128 -0.031777 20 85 SH7544 7544 snR79 snR79 61 77 31.196108 95.948942 63.572525 1.803269461 -0.125402 20 86 SH19484 19484 ADH1 26.347445 67.715441 47.031443 1.672388304 0.009129 20 87 SH3702 3702 Val3 5' flank - tRNA8 8 28.184992 79.024508 53.60475 1.729203275 -0.012174 20 88 SH12043 12043 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7101 7118 185.578916 218.863378 202.221147 2.305826569 0.22295 20 89 SH11843 11843 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6101 6114 6871.878608 4457.517198 5664.697903 3.753176754 0.095439 20 90 SH18135 18135 YLR406C_12_931752_931062_INTRON_58_406 intron 31.948907 118.072485 31.948907 87.123578 59.5362425 1.774781422 0.062357 20 91 SH2275 2275 Phe2 5' flank 24.436068 73.146954 48.791511 1.688344268 -0.209944 20 92 SH10524 10524 RUF8 RUF8 546 565 27.474234 65.360952 46.417593 1.666682616 0.123735 20 93 SH18643 18643 YNL112W_14_413636_416278_INTRON_1274_2275 exon/intron 26.365635 78.294803 26.365635 52.929168 39.6474015 1.598214729 0.262597 20 94 SH10945 10945 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1611 1624 42.157638 96.440652 69.299145 1.840727876 0.117006 20 95 SH1372 1372 Leu1 5' flank 23.190093 73.039748 48.1149205 1.682279773 -0.307792 20 96 SH4468 4468 telomerase RNA 3' 23.412872 74.298142 48.855507 1.688913525 -0.307281 20 97 SH16166 16166 YDR139C_4_733917_733611_INTRON_150_222 exon/intron 31.86421 122.642238 31.86421 91.778028 61.821119 1.791136862 -0.021708 20 98 SH13603 13603 MT ATP8/AAP1 ATP8 30.801599 108.538682 30.801599 78.737083 54.769341 1.738537515 0.158746 20 99 SH15373 15373 YBL027W_2_168385_169338_INTRON_3_386 intron 28.100898 105.803407 28.100898 78.702509 53.4017035 1.727555111 -0.013716 20 100 SH8465 8465 snoRNA cluster 5 3' 88.206503 315.950961 88.206503 228.744458 158.4754805 2.199962077 -0.742839 20 101 SH1105 1105 Gly4 tRNA 1 13 133.00084 236.96627 184.983555 2.267133121 -0.313322 20 102 SH7507 7507 snR71 3' 26.619256 73.060621 49.8399385 1.697577498 -0.04401 20 103 SH9172 9172 snR7 U5 RNA U5 131 147 31.578948 100.438197 66.0085725 1.819600341 -0.207831 20 104 SH2683 2683 Pro4 tRNA 81 95 33.321983 80.689162 57.0055725 1.755917312 0.237366 21 2 SH18137 18137 YLR406C_12_931752_931062_INTRON_58_406 intron 31.939223 119.175469 31.939223 88.236246 60.0877345 1.77878583 0.04232 21 3 SH19954 19954 YBL050W spliced 44.151167 105.727994 74.9395805 1.874711258 -0.03096 21 4 SH9690 9690 RUF4 RUF4 226 240 27.091668 90.550574 58.821121 1.769533297 -0.223034 21 5 SH17328 17328 YIL004C_9_348502_347943_INTRON_12_142 intron/exon 389.969748 706.560251 389.969748 317.590503 353.7801255 2.548733432 0.542049 21 6 SH15434 15434 YBL072C_2_89435_88518_INTRON_1_308 intron 32.898671 128.938357 32.898671 97.039686 64.9691785 1.812707375 -0.102937 21 7 SH4190 4190 telomerase RNA 5' - 5 5 26.617524 72.824993 49.7212585 1.696542113 -0.041036 21 8 SH8889 8889 LSR1 / U2 RNA U2 1086 1098 31.257324 98.342009 64.7996665 1.811572771 -0.173752 21 9 SH21140 21140 YNL162W spliced 30.897553 82.878159 56.887856 1.755019566 0.094853 21 10 SH19452 19452 CYC1 25.985363 80.460025 53.222694 1.726096854 -0.183299 21 11 SH8361 8361 snoRNA cluster4 3' 27.746111 101.394652 27.746111 74.648541 51.197326 1.709247279 0.015203 21 12 SH18364 18364 YMR079W_13_424988_426058_INTRON_10_165 5' exon 41.827839 131.625034 41.827839 90.797195 66.312517 1.821595513 0.23492 21 13 SH4872 4872 snR8 snR8 141 157 29.71528 84.033751 56.8745155 1.75491771 0.021213 21 14 SH1143 1143 His1 5' flank 27.627914 85.116926 56.37242 1.751066679 -0.124146 21 15 SH12487 12487 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 27.406789 87.241461 27.406789 60.834672 44.1207305 1.644642694 0.190291 21 16 SH11055 11055 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2161 2174 140.94712 167.461646 154.204383 2.188096718 0.343078 21 17 SH4943 4943 snR9 snR9 121 137 30.093072 123.387086 76.740079 1.885022242 -0.668593 21 18 SH17523 17523 YJL136C_10_156971_156248_INTRON_25_484 intron 30.871974 126.847628 30.871974 96.975654 63.923814 1.805662679 -0.155943 21 19 SH10251 10251 RUF6 3' 26.585943 74.655001 50.620472 1.70432619 -0.067137 21 20 SH3591 3591 Val1 5' flank 26.195064 69.880647 48.0378555 1.681583611 -0.032244 21 21 SH11468 11468 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4226 4241 1254.944301 1068.658091 1161.801196 3.065131819 0.125626 21 22 SH2031 2031 Lys3 3' flank 27.747803 70.837033 49.292418 1.692780123 0.065611 21 23 SH5019 5019 snR10 snR10 126 143 32.29844 93.586853 62.9426465 1.798944999 -0.045104 21 24 SH19319 19319 YPL198W_16_173151_174701_INTRON_12_420 intron/exon 25.613721 89.983818 25.613721 65.370097 45.491909 1.657934162 -0.009253 21 25 SH18531 18531 YMR230W_13_732413_733140_INTRON_53_462 5' exon 40.608089 137.70037 40.608089 98.092281 69.350185 1.841047624 0.05117 21 26 SH16567 16567 YER133W_5_432491_433954_INTRON_178_702 intron 33.551326 121.545869 33.551326 88.994543 61.2729345 1.78726868 0.089597 21 27 SH10522 10522 RUF8 RUF8 536 558 26.961239 89.44286 58.2020495 1.764938278 -0.219804 21 28 SH16323 16323 YDR471W_4_1401759_1402553_INTRON_32_415 intron 31.512553 110.262251 31.512553 79.749698 55.6311255 1.745317846 0.180757 21 29 SH18929 18929 YOL121C_15_92849_92025_INTRON_21_410 intron 27.964312 115.933782 27.964312 88.96947 58.466891 1.766910001 -0.148365 21 30 SH10006 10006 RUF5-1 3' 28.945471 83.496924 56.2211975 1.749900092 -0.017128 21 31 SH15070 15070 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.480072 108.943877 27.480072 82.463805 54.9719385 1.740141052 -0.102551 21 32 SH16154 16154 YDR129C_4_715372_713333_INTRON_22_132 5' exon 30.425187 118.617939 30.425187 89.192752 59.8089695 1.77676632 -0.039358 21 33 SH3790 3790 RNaseP 5' flank 30.619498 77.395034 54.007266 1.732452193 0.164786 21 34 SH3778 3778 Val4 3' flank 30.387303 100.215289 65.301296 1.814921801 -0.236197 21 35 SH2714 2714 Pro5 5' flank 27.468376 74.099076 50.783726 1.705724562 0.002918 21 36 SH18773 18773 YNL265C_14_145280_144279_INTRON_28_132 5' exon 33.689875 140.300409 33.689875 107.610534 70.6502045 1.849113423 -0.293517 21 37 SH3886 3886 RNaseP 3' 28.392295 71.140353 49.766324 1.696935563 0.10573 21 38 SH13804 13804 MT COB intronic 78.570242 211.361883 78.570242 133.791641 106.1809415 2.026046572 0.07259 21 39 SH8579 8579 snR19 / U1 RNA U1 391 407 48.635323 94.715938 71.6756305 1.855371522 0.275034 21 40 SH17542 17542 YJL177W_10_90783_91654_INTRON_310_626 intron 33.133293 129.693863 33.133293 97.56057 65.3469315 1.815225199 -0.107734 21 41 SH17075 17075 YGR225W_7_945138_946919_INTRON_1184_1276 intron 26.834861 99.474579 26.834861 73.639718 50.2372895 1.701026199 -0.036051 21 42 SH3929 3929 RNase MRP RNaseMRP 61 78 26.685463 77.452346 52.0689045 1.71657844 -0.09524 21 43 SH20044 20044 YBR189W spliced 39.92937 101.51198 70.720675 1.849546397 -0.033381 21 44 SH20022 20022 YBR119W spliced 32.971495 88.546096 60.7587955 1.783609156 0.07947 21 45 SH19873 19873 Negative Control 33.409838 102.556739 67.9832885 1.832402169 -0.202046 21 46 SH1178 1178 His1 3' flank 33.70225 91.306575 62.5044125 1.795910677 0.041351 21 47 SH11637 11637 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5071 5088 275.412975 278.957642 277.1853085 2.442770208 0.31203 21 48 SH11120 11120 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2486 2501 29.146974 83.19162 56.169297 1.749498988 -0.000389 21 49 SH3675 3675 Val2 3' flank 29.294355 81.863789 55.579072 1.744911291 0.025223 21 50 SH18298 18298 YML073C_13_124172_123227_INTRON_16_430 intron 33.22435 129.885479 33.22435 97.661129 65.4427395 1.815861471 -0.10748 21 51 SH2002 2002 Lys3 5' flank 27.88804 94.612348 61.250194 1.787107469 -0.247151 21 52 SH18612 18612 YNL069C_14_494998_493953_INTRON_29_477 intron 27.87023 95.156847 27.87023 68.286617 48.0784235 1.681950219 0.109276 21 53 SH1662 1662 Leu5 3' flank 31.739408 91.669466 61.704437 1.790316394 -0.02513 21 54 SH11410 11410 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3936 3952 58.905259 95.612723 77.258991 1.887949032 0.424388 21 55 SH3092 3092 Ser3 3' flank 27.429679 80.357597 53.893638 1.731537501 -0.080105 21 56 SH18315 18315 YML085C_13_99400_97941_INTRON_26_141 5' exon 29.399302 112.281812 29.399302 83.88251 56.640906 1.753130191 0.007571 21 57 SH11379 11379 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3781 3798 37030.69908 14563.61173 25797.1554 4.41157182 0.419749 21 58 SH18663 18663 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.587084 105.297195 30.587084 75.710111 53.1485975 1.725491809 0.184828 21 59 SH18357 18357 YMR033W_13_337787_339276_INTRON_31_116 intron 28.62655 98.974508 28.62655 71.347958 49.987254 1.69885928 0.118758 21 60 SH4202 4202 telomerase RNA telomerase 46 60 40.560004 85.947227 63.2536155 1.801085354 0.322496 21 61 SH20603 20603 YHR077C spliced 27.033788 79.516916 53.275352 1.726526328 -0.096968 21 62 SH17283 17283 YHR141C_8_382752_381991_INTRON_5_445 intron 34.31574 124.449455 34.31574 91.133715 62.7247275 1.797438783 0.060618 21 63 SH20469 20469 YGL187C spliced 27.408059 81.369149 54.388604 1.735507912 -0.094115 21 64 SH17644 17644 YJR145C_10_702761_701720_INTRON_15_270 intron 29.441648 117.551641 29.441648 89.109993 59.2758205 1.772877574 -0.081903 21 65 SH15157 15157 MT tRNA Val 5' 26.241638 96.690978 26.241638 71.44934 48.845489 1.688824462 -0.050125 21 66 SH20288 20288 YDR471W spliced 31.866214 72.193292 52.029753 1.716251764 0.309642 21 67 SH20122 20122 YDL079C spliced 29.707416 78.435529 54.0714725 1.732968197 0.094437 21 68 SH6941 6941 snR58 snR58 66 82 28.178028 90.325622 59.251825 1.772701731 -0.161578 21 69 SH21743 21743 copy of SH12553 26.195049 64.073716 45.1343825 1.654507505 0.053051 21 70 SH19253 19253 YPL129W_16_305297_306136_INTRON_10_114 intron/exon 35.105522 124.003484 35.105522 89.897962 62.501742 1.795892122 0.107791 21 71 SH10713 10713 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 451 467 31.912522 90.692503 61.3025125 1.787478275 -0.001274 21 72 SH4042 4042 SRP RNA SRP RNA 101 121 26.505838 67.285 46.895419 1.671130421 0.026791 21 73 SH11721 11721 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5491 5504 250.451009 238.084282 244.2676455 2.387865946 0.452446 21 74 SH8043 8043 snoRNA cluster 2 intergenic 24.316969 91.509002 24.316969 68.192033 46.254501 1.665154 -0.149312 21 75 SH6127 6127 snR39B 5' 47.312298 112.728106 80.020202 1.903199643 -0.099422 21 76 SH7117 7117 snR63 snR63 91 112 26.315408 70.856576 48.585992 1.686511074 -0.036725 21 77 SH17033 17033 YGR183C_7_859471_859058_INTRON_4_216 intron 28.454472 108.829955 28.454472 81.375483 54.9149775 1.73969081 -0.023596 21 78 SH17669 17669 YKL006C-A_11_430270_429836_INTRON_37_177 intron 28.138392 97.471912 28.138392 70.33352 49.235956 1.692282375 0.099376 21 79 SH16354 16354 YDR500C_4_1450856_1450201_INTRON_8_396 intron 28.033316 94.022022 28.033316 66.988706 47.511011 1.676794272 0.138926 21 80 SH4659 4659 snR3 3' 28.351689 69.846954 49.0993215 1.691075491 0.12058 21 81 SH4492 4492 U3b (snR17b) U3b 16 37 26.306315 77.295474 51.8008945 1.714337259 -0.120853 21 82 SH6200 6200 snR40 snR40 61 78 30.753703 84.5957 57.6747015 1.760985355 0.056876 21 83 SH11392 11392 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3846 3864 4345.647907 4243.087637 4294.367772 3.632899235 -0.422989 21 84 SH15427 15427 YBL072C_2_89435_88518_INTRON_1_308 intron 30.964938 114.145682 30.964938 84.180744 57.572841 1.760217661 0.073644 21 85 SH13779 13779 MT COB intronic 26.423994 101.36218 26.423994 75.938186 51.18109 1.709109531 -0.095257 21 86 SH8494 8494 snR19 / U1 RNA 5' 28.337258 83.456356 55.896807 1.747387 -0.056654 21 87 SH12232 12232 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.048901 96.646434 28.048901 69.597533 48.823217 1.688626392 0.103335 21 88 SH7835 7835 snoRNA cluster1 snR74 30.393701 126.927959 30.393701 97.534258 63.9639795 1.805935475 -0.180952 21 89 SH14412 14412 MT 21S rRNA 21S rRNA3 158.301658 396.457801 158.301658 239.156143 198.7289005 2.29826103 -0.118283 21 90 SH13686 13686 MT ORF 5 (hypothetical) ORF5 25.297379 94.324809 25.297379 70.02743 47.6624045 1.678175948 -0.101411 21 91 SH2978 2978 Ser1 3' flank 45.373791 169.8716 107.6226955 2.031903865 -0.935823 21 92 SH1234 1234 Ile1 3' flank 28.932685 100.816019 64.874352 1.812073033 -0.296179 21 93 SH5917 5917 snR36 snR36 41 60 27.776506 103.776938 65.776722 1.818072227 -0.395541 21 94 SH3245 3245 Thr1 3' flank 24.762401 75.396061 50.079231 1.699657651 -0.213456 21 95 SH14667 14667 MT 21S rRNA 21S rRNA4 26.344954 107.754798 26.344954 82.409844 54.377399 1.73541843 -0.181378 21 96 SH7593 7593 snR189 snR189 36 52 36.880804 90.668326 63.774565 1.804647505 0.13263 21 97 SH10761 10761 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 691 704 35.390182 95.590149 65.4901655 1.816176088 -0.009978 21 98 SH18176 18176 YLR448W_12_1028848_1029762_INTRON_16_399 intron 28.235197 94.43203 28.235197 67.196833 47.716015 1.678664166 0.149768 21 99 SH18606 18606 YNL069C_14_494998_493953_INTRON_29_477 intron 25.797011 96.343441 25.797011 71.54643 48.6717205 1.687276698 -0.084338 21 100 SH8949 8949 snR17a / U3a U3a 31 50 35.361641 95.111148 65.2363945 1.81448995 -0.000466 21 101 SH7487 7487 snR71 snR71 51 70 32.993042 88.506567 60.7498045 1.783544885 0.081036 21 102 SH10048 10048 RUF6 RUF6 86 103 36.358964 96.958508 66.658736 1.823857074 -0.015788 21 103 SH4490 4490 U3b (snR17b) U3b 6 23 36.489518 92.441091 64.4653045 1.809326038 0.084192 21 104 SH5509 5509 snR32 3' 28.554473 74.395762 51.4751175 1.711597347 0.072798 22 2 SH1947 1947 Lys2 5' flank 26.432104 74.203467 50.3177855 1.701721519 -0.072492 22 3 SH5172 5172 snR13 snR13 16 37 39.748572 93.236493 66.4925325 1.822772874 0.138287 22 4 SH521 521 Cys1 5' flank 27.084041 81.516452 54.3002465 1.734801801 -0.118334 22 5 SH19189 19189 YPL079W_16_406631_407534_INTRON_12_432 intron/exon 29.764436 115.388699 29.764436 86.624263 58.1943495 1.764880818 -0.023543 22 6 SH14595 14595 MT 21S rRNA Sce1 endonuc 28.137983 116.835921 28.137983 89.697938 58.9179605 1.770247705 -0.152693 22 7 SH5435 5435 snR31 3' 28.739258 80.393161 54.5662095 1.736923786 0.007327 22 8 SH893 893 Glu3 5' flank 26.768196 88.239627 57.5039115 1.759697387 -0.219783 22 9 SH17569 17569 YJL189W_10_75932_76473_INTRON_7_392 intron 31.331248 103.80488 31.331248 73.473632 52.40244 1.719351509 0.260141 22 10 SH13805 13805 MT COB intronic 26.61362 118.859858 26.61362 93.246238 59.929929 1.777643763 -0.287256 22 11 SH2222 2222 Phe1 5' flank - tRNA2 2 28.536103 82.843496 55.6897995 1.745775654 -0.0361 22 12 SH20000 20000 YBR078W spliced 32.6202 92.983169 62.8016845 1.797971293 -0.02349 22 13 SH6769 6769 snR50 snR50 21 37 30.169397 92.999683 61.58454 1.789471702 -0.115316 22 14 SH284 284 Arg4 16-30 16 30 27.705347 77.367831 52.536589 1.720461872 -0.023302 22 15 SH17388 17388 YIL069C_9_232366_231550_INTRON_4_412 intron 29.491246 128.997244 29.491246 100.505998 64.998622 1.81290415 -0.267663 22 16 SH13101 13101 MT COX1 COX1ai3 29.608 131.263059 29.608 102.655059 66.1315295 1.820408567 -0.307248 22 17 SH18890 18890 YOL120C_15_94401_93394_INTRON_113_559 5' exon 26.002654 87.804704 26.002654 62.80205 44.402352 1.647405975 0.059644 22 18 SH2577 2577 Pro2 3' flank 26.587204 68.534596 47.5609 1.677250064 0.015036 22 19 SH20894 20894 YLR287C-A spliced 28.61816 81.554646 55.086403 1.741044415 -0.01499 22 20 SH14580 14580 MT 21S rRNA intronic 34.421965 132.639423 34.421965 99.217458 66.8197115 1.824904596 -0.109318 22 21 SH2240 2240 Phe1 tRNA 76 90 33.675931 90.591872 62.1339015 1.793328625 0.056641 22 22 SH15602 15602 YBR119W_2_479296_480281_INTRON_9_97 5' exon 31.678303 121.621335 31.678303 90.943032 61.3106675 1.787536044 -0.015401 22 23 SH2903 2903 Pro8 tRNA 36 48 30.091335 97.369353 63.730344 1.804346263 -0.189813 22 24 SH10612 10612 RUF8 3' 32.611291 90.031724 61.3215075 1.787612823 0.039028 22 25 SH5519 5519 snR32 3' 30.183252 90.896103 60.5396775 1.782040103 -0.079308 22 26 SH17567 17567 YJL189W_10_75932_76473_INTRON_7_392 intron 27.591417 103.013191 27.591417 76.421774 52.0065955 1.716058425 -0.018748 22 27 SH5195 5195 snR13 3' 27.296482 83.736221 55.5163515 1.744420917 -0.130512 22 28 SH18403 18403 YMR125W_13_517538_520445_INTRON_26_347 intron 31.661488 129.359576 31.661488 98.698088 65.179788 1.814112944 -0.17011 22 29 SH1606 1606 Leu4 3' flank 35.528691 92.831603 64.180147 1.807400707 0.052824 22 30 SH823 823 Glu1 3' flank 30.850502 89.411375 60.1309385 1.779097982 -0.024565 22 31 SH20215 20215 YDR064W spliced 31.792011 97.405979 64.598995 1.810225762 -0.139834 22 32 SH2840 2840 Pro7 tRNA 6 22 90.016515 149.007593 119.512054 2.07741171 0.026327 22 33 SH18327 18327 YML094W_13_82275_82849_INTRON_17_99 exon/intron 29.8868 125.183715 29.8868 96.296915 63.0918575 1.799973314 -0.181809 22 34 SH8856 8856 LSR1 / U2 RNA U2 921 935 1083.951732 1377.846169 1230.898951 3.090222401 -0.465664 22 35 SH12543 12543 MT_ORF6 + ORF7 (hypothetical) ORF6/7 / 3' 26.797513 109.980002 26.797513 84.182489 55.490001 1.744214733 -0.170594 22 36 SH2704 2704 Pro5 5' flank 29.026747 75.353409 52.190078 1.717587946 0.0909 22 37 SH14876 14876 MT tRNA Ala 5' 26.678509 96.024193 26.678509 70.345684 48.5120965 1.685850044 -0.003391 22 38 SH18881 18881 YNR053C_14_723108_721117_INTRON_811_1341 3' exon 31.09178 122.967864 31.09178 92.876084 61.983932 1.792279123 -0.072952 22 39 SH7671 7671 snoRNA cluster1 snR78 26.461848 97.487642 26.461848 72.025794 49.243821 1.692351744 -0.041743 22 40 SH2869 2869 Pro7 3' flank 27.792369 73.043285 50.417827 1.702584124 0.039271 22 41 SH15671 15671 YBR191W_2_606228_607098_INTRON_12_399 intron 29.173609 116.671619 29.173609 88.49801 58.8358095 1.769641733 -0.083483 22 42 SH11955 11955 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6661 6674 144.604585 191.643481 168.124033 2.225629799 0.145044 22 43 SH10021 10021 RUF6 5' 37.215466 89.072713 63.1440895 1.800332705 0.176405 22 44 SH7708 7708 snoRNA cluster1 snR77 94.76568 247.564552 94.76568 153.798872 124.282276 2.094409198 0.027192 22 45 SH20189 20189 YDL219W spliced 26.344595 67.9351 47.1398475 1.673388173 0.005813 22 46 SH20104 20104 YDL061C spliced 29.24654 87.143009 58.1947745 1.76488399 -0.056273 22 47 SH15467 15467 YBL087C_2_60732_59815_INTRON_43_546 intron 27.283163 101.516506 27.283163 75.233343 51.258253 1.7097638 -0.024688 22 48 SH7029 7029 snR62 5' 32.066997 80.895545 56.481271 1.751904461 0.182032 22 49 SH12339 12339 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.895724 125.020553 29.895724 96.124829 63.0102765 1.799411385 -0.178642 22 50 SH17840 17840 YKR094C_11_618384_617630_INTRON_9_376 intron 27.88192 103.360365 27.88192 76.478445 52.1801825 1.717505594 0.000245 22 51 SH20027 20027 YBR119W spliced 28.111122 75.548505 51.8298135 1.714579646 0.027919 22 52 SH19327 19327 YPL218W_16_138697_139408_INTRON_29_167 intron 25.469099 98.530834 25.469099 74.061735 49.765417 1.696927648 -0.14213 22 53 SH7599 7599 snR189 snR189 66 80 40.968059 105.182171 73.075115 1.863769507 -0.084595 22 54 SH12104 12104 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7406 7422 35.065841 91.154436 63.1101385 1.800099133 0.078639 22 55 SH21378 21378 Lys3_4 spliced 41.391536 98.984539 70.1880375 1.846263099 0.048215 22 56 SH18262 18262 YML056C_13_164176_162194_INTRON_461_868 intron 27.983687 108.104382 27.983687 81.120695 54.552191 1.736812198 -0.051891 22 57 SH18219 18219 YML025C_13_225365_224406_INTRON_28_126 3' exon 53.10157 168.333591 53.10157 116.232021 84.6667955 1.927713123 -0.055396 22 58 SH2609 2609 Pro3 5' flank - tRNA8 8 61.672339 122.611097 92.141718 1.964456305 -0.014101 22 59 SH20009 20009 YBR082C spliced 33.174319 99.355661 66.26499 1.821284137 -0.1437 22 60 SH11566 11566 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4716 4729 90.999359 135.858827 113.429093 2.054724459 0.202963 22 61 SH16520 16520 YER131W_5_423587_424307_INTRON_1_361 5' exon 29.456111 126.144804 29.456111 97.688693 63.572402 1.803268621 -0.223435 22 62 SH9972 9972 RUF5-1 RUF5-1 666 683 27.536647 77.791113 52.66388 1.721512853 -0.040273 22 63 SH10651 10651 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 141 158 34.738105 98.669456 66.7037805 1.824150449 -0.090257 22 64 SH7666 7666 snoRNA cluster1 snR78 27.54401 103.718222 27.54401 77.174212 52.359111 1.718992264 -0.031797 22 65 SH20737 20737 YJL191W spliced 31.63628 98.465694 65.050987 1.81325389 -0.166004 22 66 SH2021 2021 Lys3 tRNA-intron/exon 51 67 61.295879 154.735776 108.0158275 2.033487397 -0.455248 22 67 SH3535 3535 Tyr2 5' flank 28.244749 85.090077 56.667413 1.753333387 -0.082226 22 68 SH15053 15053 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.398205 94.710238 26.398205 69.312033 47.855119 1.679928401 -0.009527 22 69 SH20024 20024 YBR119W spliced 31.214559 93.353966 62.2842625 1.794378326 -0.075616 22 70 SH3551 3551 Tyr2 tRNA-exon/intron 26 42 28.939747 79.217784 54.0787655 1.733026769 0.035172 22 71 SH12448 12448 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.289668 124.83359 33.289668 92.543922 62.916795 1.798766591 0.003489 22 72 SH13612 13612 MT ATP8/AAP1 3' 25.957484 95.943621 25.957484 70.986137 48.4718105 1.685489242 -0.064851 22 73 SH2568 2568 Pro2 tRNA 76 88 46.016984 98.766151 72.3915675 1.859687981 0.142673 22 74 SH18233 18233 YML026C_13_223828_222987_INTRON_48_448 intron 28.081766 113.437349 28.081766 86.355583 57.2186745 1.757537793 -0.107911 22 75 SH5474 5474 snR32 snR32 31 50 26.182299 76.528926 51.3556125 1.710587913 -0.120389 22 76 SH11253 11253 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3151 3168 121.050684 209.841384 165.446034 2.218656361 -0.220474 22 77 SH20888 20888 YLR275W spliced 26.369164 79.30627 52.837717 1.722944044 -0.141213 22 78 SH9775 9775 RUF4 RUF4 651 666 59.403573 120.382733 89.893153 1.953726614 -0.016602 22 79 SH17796 17796 YKL186C_11_93537_92746_INTRON_71_233 intron/exon 28.376644 112.314424 28.376644 84.93778 56.657212 1.7532552 -0.071654 22 80 SH2781 2781 Pro6 5' flank - tRNA10 10 152.988111 251.690756 202.3394335 2.30608053 -0.245106 22 81 SH7146 7146 snR63 snR63 236 253 32.912839 95.20658 64.0597095 1.806584965 -0.063842 22 82 SH7190 7190 snR64 snR64 16 30 3187.313974 4228.17598 3707.744977 3.569109855 -0.820887 22 83 SH18727 18727 YNL147W_14_350937_351380_INTRON_19_138 intron 35.173996 107.567734 35.173996 73.393738 54.283867 1.734670778 0.45636 22 84 SH19044 19044 YOR234C_15_779404_778554_INTRON_20_546 intron 30.795899 117.689854 30.795899 87.893955 59.344927 1.7733836 -0.000457 22 85 SH13405 13405 MT COX1 intronic 26.192651 105.16072 26.192651 79.968069 53.08036 1.72493386 -0.162188 22 86 SH10181 10181 RUF6 RUF6 751 763 41.479822 104.010054 72.744938 1.861802778 -0.051225 22 87 SH14063 14063 MT COB Cytbi4 39.038892 120.90448 39.038892 82.865588 60.95224 1.784989671 0.363971 22 88 SH20967 20967 YML026C spliced 28.102865 69.325853 48.714359 1.687656992 0.11079 22 89 SH2723 2723 Pro5 5' flank - tRNA10 10 157.272606 297.876809 227.5747075 2.357123993 -0.491768 22 90 SH12504 12504 MT_tRNA Pro 3' 25.67923 95.838792 25.67923 71.159562 48.419396 1.685019368 -0.087948 22 91 SH15915 15915 YDL083C_4_307788_306925_INTRON_25_456 intron 28.435221 97.007084 28.435221 69.571863 49.003542 1.690227472 0.130033 22 92 SH3249 3249 Thr1 3' flank 32.418172 175.434561 103.9263665 2.016725744 -1.318222 22 93 SH4343 4343 telomerase RNA telomerase 751 770 26.907238 117.871287 72.3892625 1.859674152 -0.669678 22 94 SH1840 1840 Leu9 5' flank 31.03901 115.49328 73.266145 1.864903341 -0.506759 22 95 SH4747 4747 snR5 5' 25.633482 74.642093 50.1377875 1.700165165 -0.137231 22 96 SH15688 15688 YBR191W_2_606228_607098_INTRON_12_399 intron 22.644105 87.845336 22.644105 66.201231 44.422668 1.647604638 -0.252427 22 97 SH13821 13821 MT COB Cytbi2 29.534143 109.852686 29.534143 81.318543 55.426343 1.743716225 0.047274 22 98 SH10333 10333 RUF7 RUF7 276 293 35.836368 92.112949 63.9746585 1.806007976 0.075975 22 99 SH4005 4005 SRP RNA 5' 30.465331 81.112286 55.7888085 1.746547086 0.108306 22 100 SH17405 17405 YIL069C_9_232366_231550_INTRON_4_412 intron/exon 30.927985 113.064102 30.927985 83.136117 57.032051 1.75611899 0.091363 22 101 SH9609 9609 RUF3 431 + 3' 431 34.399232 92.844441 63.6218365 1.803606201 0.02493 22 102 SH14584 14584 MT 21S rRNA intronic 31.056028 119.072188 31.056028 89.01616 60.036094 1.778412429 -0.008825 22 103 SH9189 9189 snR7 U5 RNA 3' 28.992084 85.066407 57.0292455 1.756097626 -0.032741 22 104 SH3830 3830 RNaseP RNaseP 116 128 35.492154 93.699721 64.5959375 1.810205206 0.033043 23 2 SH3845 3845 RNaseP RNaseP 191 206 34.442394 86.758647 60.6005205 1.782476354 0.163671 23 3 SH13634 13634 MT ATP6 ATP6 27.52443 107.095138 27.52443 80.570708 54.047569 1.732776165 -0.076259 23 4 SH18268 18268 YML056C_13_164176_162194_INTRON_461_868 intron 29.707289 103.204291 29.707289 74.497002 52.1021455 1.716855607 0.14601 23 5 SH12453 12453 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.332752 128.997155 36.332752 93.664403 64.9985775 1.812903852 0.053816 23 6 SH10942 10942 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1596 1613 32.099627 76.734409 54.417018 1.735734739 0.262316 23 7 SH11638 11638 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5076 5094 13971.19204 6923.240923 10447.21648 4.019000594 0.322894 23 8 SH1363 1363 Ile3 3' flank 30.927198 67.956184 49.441691 1.694093316 0.313843 23 9 SH2536 2536 Pro2 5' flank 31.169941 78.115237 54.642589 1.737531268 0.189083 23 10 SH20979 20979 YML056C spliced 31.28598 86.111597 58.6987885 1.768629138 0.052368 23 11 SH17544 17544 YJL177W_10_90783_91654_INTRON_310_626 intron 28.968297 86.023597 28.968297 58.0553 43.5117985 1.638607035 0.341387 23 12 SH17768 17768 YKL180W_11_109271_110131_INTRON_310_615 5' exon 26.47125 99.209464 26.47125 73.738214 50.104732 1.699878744 -0.063606 23 13 SH16051 16051 YDL191W_4_117665_118518_INTRON_4_494 intron 28.262863 93.553055 28.262863 66.290192 47.2765275 1.67464557 0.164689 23 14 SH2959 2959 Ser1 tRNA 26 45 27.573979 65.005215 46.289597 1.6654834 0.135951 23 15 SH21841 21841 copy of SH17171 42.069976 89.63852 65.854248 1.818583795 0.26616 23 16 SH21551 21551 copy of SH4564 37.798212 81.578101 59.6881565 1.775888166 0.368165 23 17 SH6488 6488 snR46 5' 30.012965 79.28774 54.6503525 1.737592968 0.102898 23 18 SH11208 11208 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2926 2944 26.097479 64.064956 45.0812175 1.653995636 0.046215 23 19 SH5924 5924 snR36 snR36 76 98 27.828382 78.198017 53.0131995 1.724384016 -0.025639 23 20 SH9367 9367 RUF1 RUF1 411 427 26.993572 69.393217 48.1933945 1.682987517 0.032301 23 21 SH15731 15731 YBR230C_2_680008_679507_INTRON_12_108 intron 28.839883 99.657732 28.839883 71.817849 50.328866 1.701817145 0.126757 23 22 SH5248 5248 snR30 snR30 91 107 40.502878 104.210378 72.356628 1.859478319 -0.075556 23 23 SH12779 12779 MT COX1 COX1ai1 26.124691 99.133766 26.124691 74.009075 50.066883 1.699550554 -0.092504 23 24 SH4247 4247 telomerase RNA telomerase 271 290 28.975521 75.81652 52.3960205 1.719298303 0.081438 23 25 SH3741 3741 Val4 5' flank 26.671635 70.492492 48.5820635 1.686475957 -0.005887 23 26 SH2977 2977 Ser1 3' flank 28.41116 74.651854 51.531507 1.712072843 0.059877 23 27 SH1003 1003 Gly2 tRNA 6 22 50.263417 119.143554 84.7034855 1.927901282 -0.155427 23 28 SH4595 4595 U3b (snR17b) 3' 25.454391 60.405105 42.929748 1.632758339 0.059357 23 29 SH16837 16837 YGL178W_7_167356_170575_INTRON_4_643 intron 27.737766 98.825103 27.737766 72.087337 49.9125515 1.698209771 0.048125 23 30 SH6327 6327 snR42 3' 30.545225 71.902535 51.22388 1.709472471 0.23391 23 31 SH15417 15417 YBL059W_2_110555_111205_INTRON_287_355 intron 29.235199 117.554803 29.235199 89.319604 59.2774015 1.772889158 -0.094956 23 32 SH14340 14340 MT VAR1 includes 5’ processing site VAR1 27.46387 105.045803 27.46387 78.581933 53.0229015 1.724463489 -0.055386 23 33 SH13567 13567 MT COX1 Exon 6 29.444332 105.28153 29.444332 76.837198 53.140765 1.725427802 0.09829 23 34 SH11347 11347 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3621 3638 30.944843 72.410203 51.677523 1.713301689 0.251356 23 35 SH20291 20291 YDR500C spliced 44.597435 105.471693 75.034564 1.875261363 -0.017418 23 36 SH1175 1175 His1 3' flank 26.566765 76.76989 51.6683275 1.713224404 -0.095333 23 37 SH12203 12203 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7901 7918 34.130495 89.044295 61.587395 1.789491835 0.103091 23 38 SH10031 10031 RUF6 RUF6 1 17 29.703529 89.696135 59.699832 1.775973109 -0.080193 23 39 SH21115 21115 YNL096C spliced 27.397605 87.612041 57.504823 1.759704271 -0.168846 23 40 SH16494 16494 YER117W_5_396765_397649_INTRON_43_513 intron 36.837737 136.126684 36.837737 100.288947 68.563342 1.836091978 -0.074684 23 41 SH11654 11654 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5156 5173 103.868363 130.701897 117.28513 2.069242954 0.417833 23 42 SH18131 18131 YLR406C_12_931752_931062_INTRON_58_406 5' exon 26.892522 96.673357 26.892522 70.780835 48.8366785 1.688746119 0.006079 23 43 SH5745 5745 snR35 5' 28.673017 71.87265 50.2728335 1.701333364 0.11485 23 44 SH17905 17905 YLR061W_12_263195_263949_INTRON_13_401 intron 30.866944 124.999425 30.866944 95.132481 62.9997125 1.799338568 -0.119799 23 45 SH19817 19817 Negative Control 40.733883 99.517184 70.1255335 1.845876178 0.023968 23 46 SH18780 18780 YNL265C_14_145280_144279_INTRON_28_132 intron/exon 27.329228 101.541519 27.329228 75.212291 51.2707595 1.709869751 -0.021171 23 47 SH14241 14241 MT tRNA Ser 5'/tRNA 28.757158 106.014365 28.757158 78.257207 53.5071825 1.728412083 0.035461 23 48 SH8531 8531 snR19 / U1 RNA U1 151 167 29.921482 94.79492 62.358201 1.794893578 -0.155937 23 49 SH17783 17783 YKL180W_11_109271_110131_INTRON_310_615 intron 30.091814 101.861807 30.091814 72.769993 51.4309035 1.711224154 0.193725 23 50 SH12860 12860 MT COX1 COX1ai1 28.058976 112.227244 28.058976 85.168268 56.613622 1.752920941 -0.095579 23 51 SH18894 18894 YOL120C_15_94401_93394_INTRON_113_559 intron 35.41955 137.515144 35.41955 103.095594 69.257572 1.840467262 -0.163916 23 52 SH16638 16638 YFR024C-A_6_203420_201947_INTRON_48_165 intron 27.924059 98.341461 27.924059 71.417402 49.6707305 1.696100547 0.069976 23 53 SH12942 12942 MT COX1 COX1ai2 27.295291 96.52166 27.295291 70.226369 48.76083 1.68807109 0.042254 23 54 SH16746 16746 YGL076C_7_365994_364333_INTRON_565_1032 intron 26.754529 96.215664 26.754529 70.461135 48.607832 1.686706251 0.000516 23 55 SH17608 17608 YJL205C-A_10_50443_50139_INTRON_33_175 intron/exon 26.612183 97.112267 26.612183 71.500084 49.0561335 1.690693315 -0.023804 23 56 SH8185 8185 snoRNA cluster 3; snR70 36.057459 139.561851 36.057459 104.504392 70.2809255 1.846837472 -0.177225 23 57 SH12173 12173 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7751 7771 29.236222 69.516209 49.3762155 1.6935178 0.184299 23 58 SH294 294 Arg4 66-72 + 3' flank 66 3' flank 26.736293 68.85717 47.7967315 1.679398199 0.021299 23 59 SH3404 3404 Thr4 3' flank 26.498384 64.759965 45.6291745 1.659242612 0.063745 23 60 SH20127 20127 YDL082W spliced 36.080235 97.179771 66.630003 1.823669833 -0.026964 23 61 SH5041 5041 snR10 236-245 + 3' 236 27.428562 90.912647 59.1706045 1.772106006 -0.207679 23 62 SH7841 7841 snoRNA cluster1 snR74 28.944824 105.260357 28.944824 77.315533 53.1301785 1.725341275 0.059838 23 63 SH17708 17708 YKL081W_11_282533_284097_INTRON_206_531 intron 32.517 116.347966 32.517 84.830966 58.673983 1.768445571 0.1272 23 64 SH21053 21053 YMR143W spliced 25.34972 61.722408 43.536064 1.638849163 0.029731 23 65 SH17762 17762 YKL157W_11_154993_158183_INTRON_282_664 intron 27.356203 95.604488 27.356203 69.248285 48.302244 1.683967307 0.060006 23 66 SH2623 2623 Pro3 tRNA-intron/exon 66 78 96.36913 161.912712 129.140921 2.111063879 -0.043676 23 67 SH11179 11179 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2781 2794 30.685191 83.488829 57.08701 1.756537297 0.074266 23 68 SH18786 18786 YNL301C_14_64561_63569_INTRON_113_544 intron 30.97048 110.321179 30.97048 80.350699 55.6605895 1.745547802 0.145919 23 69 SH260 260 Arg3 3' flank 31.570005 93.293727 62.431866 1.795406316 -0.059463 23 70 SH3728 3728 Val3 3' flank 27.246132 70.8898 49.067966 1.690798056 0.02976 23 71 SH1128 1128 Gly4 3' flank 26.932954 82.508208 54.720581 1.7381507 -0.140981 23 72 SH10715 10715 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 461 474 59.883744 117.123592 88.503668 1.94696127 0.043861 23 73 SH4128 4128 SRP RNA SRP RNA 531 543 45.729216 104.177312 74.953264 1.87479055 0.029108 23 74 SH8194 8194 snoRNA cluster 3; intergenic 25.80333 92.627104 25.80333 67.823774 46.813552 1.670371595 -0.032592 23 75 SH9474 9474 RUF2 RUF2 211 227 29.629584 89.819281 59.7244325 1.776152032 -0.085652 23 76 SH360 360 Arg5 3' flank 37.748734 80.304416 59.026575 1.771047584 0.399 23 77 SH17124 17124 YHR010W_8_126513_127484_INTRON_32_592 intron 30.743663 113.549924 30.743663 83.806261 57.274962 1.75796481 0.070943 23 78 SH3955 3955 RNase MRP RNaseMRP 191 206 30.643608 78.718901 54.6812545 1.73783847 0.149287 23 79 SH15502 15502 YBR048W_2_332790_333771_INTRON_46_556 5' exon 30.533766 119.558811 30.533766 90.025045 60.2794055 1.78016896 -0.048959 23 80 SH882 882 Glu3 5' flank 30.482402 88.415105 59.4487535 1.774142753 -0.023297 23 81 SH1468 1468 Leu2 111-114 + 3' flank 111 28.198243 73.037964 50.6181035 1.704305869 0.067262 23 82 SH19129 19129 YPL075W_16_412249_415357_INTRON_9_759 intron 28.253404 96.554578 28.253404 69.301174 48.777289 1.688217659 0.12142 23 83 SH14794 14794 "MT tRNAs (Lys, Arg1, Gly)" 5' / tRNA Lys 28.534694 112.009763 28.534694 84.475069 56.5048815 1.752085968 -0.05572 23 84 SH2143 2143 Met1 3' flank 28.778643 73.83521 51.3069265 1.710175999 0.095104 23 85 SH3506 3506 Tyr1 tRNA 71 83 33.150913 90.562419 61.856666 1.791386508 0.043871 23 86 SH474 474 Asp2 5' flank 30.49131 88.600397 59.5458535 1.774851525 -0.026144 23 87 SH7080 7080 snR63 5' 25.86095 74.126508 49.993729 1.698915532 -0.113566 23 88 SH8229 8229 snoRNA cluster 3; 3' 30.366475 113.471807 30.366475 84.105332 57.2359035 1.757668543 0.04891 23 89 SH20002 20002 YBR078W spliced 30.757989 91.508481 61.133235 1.786277378 -0.064449 23 90 SH13920 13920 MT COB Cytbi3 26.173445 95.09755 26.173445 69.924105 48.048775 1.68168232 -0.03443 23 91 SH1286 1286 Ile2 126-133 + 3' flank 126 140 27.033781 76.95484 51.9943105 1.715955823 -0.064177 23 92 SH7834 7834 snoRNA cluster1 snR74 42.927942 190.757958 42.927942 148.830016 95.878979 1.981723401 -0.735944 23 93 SH757 757 Gln4 tRNA 56 70 45.395307 109.664506 77.5299065 1.88946926 -0.081289 23 94 SH11651 11651 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5141 5154 34.799621 83.248133 59.023877 1.771027733 0.24714 23 95 SH11024 11024 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2006 2019 215.786648 260.058513 237.9225805 2.376435662 0.122402 23 96 SH17828 17828 YKR094C_11_618384_617630_INTRON_9_376 5' exon 25.609534 97.504341 25.609534 72.894807 49.2521705 1.692425374 -0.116301 23 97 SH20347 20347 YER102W spliced 38.535593 90.451143 64.493368 1.809515057 0.175015 23 98 SH20949 20949 YLR448W spliced 41.186721 104.535279 72.861 1.862495128 -0.06752 23 99 SH16692 16692 YGL030W_7_439087_439634_INTRON_4_233 3' exon 28.769458 104.15325 28.769458 76.383792 52.576625 1.720792704 0.060527 23 100 SH3546 3546 Tyr2 tRNA 1 13 36.943131 87.272601 62.107866 1.793146607 0.211586 23 101 SH19498 19498 YPT1 24.339932 72.309893 48.3249125 1.684171076 -0.206491 23 102 SH7368 7368 snR68 snR68 61 82 21.398673 66.968165 44.183419 1.645259319 -0.368551 23 103 SH6595 6595 snR47 snR47 81 97 26.668146 71.770042 49.219094 1.692133615 -0.023374 23 104 SH17741 17741 YKL156W_11_158616_159214_INTRON_4_353 3' exon 25.019929 99.349689 25.019929 75.32976 50.1748445 1.700486035 -0.192687 24 2 SH18940 18940 YOL121C_15_92849_92025_INTRON_21_410 3' exon 26.300549 108.845772 26.300549 83.545223 54.922886 1.73975335 -0.198256 24 3 SH14827 14827 "MT tRNAs (Lys, Arg1, Gly)" 3' 25.1228 95.618346 25.1228 71.495546 48.309173 1.684029603 -0.134656 24 4 SH848 848 Glu2 tRNA 6 23 6705.687299 3614.769911 5160.228605 3.712668942 0.39544 24 5 SH16282 16282 YDR447C_4_1355542_1354818_INTRON_4_317 intron 25.551849 95.555501 25.551849 71.003652 48.2777505 1.683747026 -0.09542 24 6 SH5958 5958 snR36 snR36 246 263 36.416065 86.946787 61.681426 1.790154406 0.206899 24 7 SH16726 16726 YGL033W_7_435621_436347_INTRON_56_125 intron 29.895883 99.759106 29.895883 70.863223 50.379553 1.70225431 0.208001 24 8 SH5217 5217 snR30 5' 27.975106 74.997343 51.4862245 1.711691046 0.026111 24 9 SH15730 15730 YBR230C_2_680008_679507_INTRON_12_108 intron 26.011688 103.729136 26.011688 78.717448 52.364568 1.719037525 -0.160036 24 10 SH16843 16843 YGL178W_7_167356_170575_INTRON_4_643 intron 28.467673 88.430379 28.467673 60.962706 44.7151895 1.650455076 0.259143 24 11 SH9038 9038 snR17a / U3a U3a 476 490 72.015684 114.853697 93.4346905 1.970508151 0.263533 24 12 SH921 921 Glu3 3' flank 26.367278 73.896632 50.131955 1.700114641 -0.073244 24 13 SH4798 4798 snR5 snR5 161 180 30.387896 99.902862 65.145379 1.813883615 -0.22984 24 14 SH1274 1274 Ile2 tRNA-intron 66 82 31.780867 85.89617 58.8385185 1.769661729 0.077248 24 15 SH19831 19831 Negative Control 26.745826 83.292754 55.01929 1.740514982 -0.163593 24 16 SH15048 15048 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.625555 88.533862 26.625555 62.908307 44.766931 1.650957322 0.102174 24 17 SH11806 11806 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5916 5931 88.327683 125.615736 106.9717095 2.029268936 0.312369 24 18 SH13315 13315 MT COX1 COX1-ai5a 25.396492 104.889627 25.396492 80.493135 52.9448135 1.723823423 -0.227535 24 19 SH910 910 Glu3 61-72 + 3' flank 61 35.765057 95.043103 65.40408 1.815604841 0.010683 24 20 SH3891 3891 RNaseP 3' 39.426858 108.066952 73.746905 1.867743799 -0.172341 24 21 SH5841 5841 snR35 snR35 391 407 37.541394 103.120274 70.330834 1.847145767 -0.116541 24 22 SH13800 13800 MT COB intronic 25.564061 88.915295 25.564061 64.351234 44.9576475 1.652803578 0.003083 24 23 SH5725 5725 snR34 546-550 + 3' 546 26.52084 77.155868 51.838354 1.714651203 -0.103477 24 24 SH7893 7893 snoRNA cluster1 intergenic 52.573644 158.254289 52.573644 106.680645 79.6271445 1.901061142 0.104605 24 25 SH5068 5068 snR11 5' 27.047837 70.417846 48.7328415 1.687821735 0.022103 24 26 SH7435 7435 snR69 snR69 76 94 26.601208 75.246526 50.923867 1.706921375 -0.073605 24 27 SH17856 17856 YKR095W-A_11_625432_625839_INTRON_39_113 intron 26.046657 102.183207 26.046657 77.13655 51.5916035 1.712579026 -0.137981 24 28 SH1601 1601 Leu4 3' flank 25.611475 80.64054 53.1260075 1.725307179 -0.213058 24 29 SH17269 17269 YHR123W_8_354817_356083_INTRON_51_141 intron 36.342306 137.104288 36.342306 101.761982 69.052144 1.839177168 -0.1159 24 30 SH10339 10339 RUF7 RUF7 306 323 25.832261 63.591436 44.7118485 1.650422625 0.034661 24 31 SH7779 7779 snoRNA cluster1 intergenic 31.436556 102.496875 31.436556 72.060319 51.7484375 1.713897241 0.28591 24 32 SH1120 1120 Gly4 3' flank 27.584614 78.401591 52.9931025 1.724219346 -0.04482 24 33 SH5328 5328 snR30 snR30 491 507 29.648515 85.358718 57.5036165 1.759695159 -0.005998 24 34 SH21846 21846 copy of SH17381 40.457884 112.218573 76.3382285 1.882742078 -0.226678 24 35 SH8468 8468 snoRNA cluster 5 3' 28.599225 93.116535 28.599225 65.51731 47.0582675 1.672635934 0.198727 24 36 SH11699 11699 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5381 5394 31804.34736 13766.85221 22785.59978 4.357660465 0.309852 24 37 SH8879 8879 LSR1 / U2 RNA U2 1036 1048 187.91662 232.81607 210.366345 2.322976261 0.135569 24 38 SH14618 14618 MT 21S rRNA Sce1 endonuc 27.968344 101.993599 27.968344 75.025255 51.4967995 1.711780239 0.025283 24 39 SH736 736 Gln4 5' flank 28.077494 78.109474 53.093484 1.725041225 -0.007713 24 40 SH18551 18551 YMR230W_13_732413_733140_INTRON_53_462 intron 27.963703 105.801075 27.963703 78.837372 53.4005375 1.727545628 -0.024652 24 41 SH18273 18273 YML056C_13_164176_162194_INTRON_461_868 intron 27.740859 113.938825 27.740859 87.197966 57.4694125 1.759436757 -0.140643 24 42 SH1856 1856 Leu9 tRNA 21 37 32.175966 88.57466 60.375313 1.780859395 0.046282 24 43 SH10962 10962 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1696 1714 236.874701 255.119153 245.996927 2.390929682 0.269697 24 44 SH14781 14781 MT ORF11; tRNA Leu; tRNA Gln tRNA / 3' 29.606002 125.659772 29.606002 97.05377 63.329886 1.801608706 -0.206554 24 45 SH5245 5245 snR30 snR30 76 92 29.886904 75.476016 52.68146 1.721657802 0.144295 24 46 SH13633 13633 MT ATP6 ATP6 27.764381 104.711861 27.764381 77.94748 52.8559305 1.723093723 -0.026765 24 47 SH21549 21549 copy of SH4562 27.637726 88.410665 58.0241955 1.763609128 -0.16149 24 48 SH5310 5310 snR30 snR30 401 415 32.082931 94.933777 63.508354 1.802830857 -0.079844 24 49 SH7488 7488 snR71 snR71 56 74 29.918669 70.206679 50.062674 1.699514043 0.218756 24 50 SH13925 13925 MT COB Cytbi3 28.011536 102.207521 28.011536 75.195985 51.6037605 1.712681351 0.025915 24 51 SH10573 10573 RUF8 RUF8 791 805 30.624566 92.99757 61.811068 1.791066248 -0.095239 24 52 SH7042 7042 snR62 snR62 1 23 30.491946 74.831241 52.6615935 1.721493996 0.190648 24 53 SH11928 11928 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6526 6541 7896.107236 4436.023907 6166.065572 3.790008139 0.283973 24 54 SH6621 6621 snR48 5' 29.884932 74.793271 52.3391015 1.718826263 0.153269 24 55 SH833 833 Glu2 5' flank 27.527638 74.568776 51.048207 1.707980493 0.001005 24 56 SH16197 16197 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 27.604857 97.219364 27.604857 70.614507 49.109682 1.691167122 0.058684 24 57 SH14267 14267 MT VAR1 includes 5’ processing site VAR1 27.472454 97.658666 27.472454 71.186212 49.329333 1.693105243 0.041687 24 58 SH1982 1982 Lys2 3' flank 31.680514 95.047272 63.363893 1.801841852 -0.093059 24 59 SH12183 12183 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7801 7817 40.709632 96.568161 68.6388965 1.836570293 0.085524 24 60 SH12824 12824 MT COX1 COX1ai1 27.055256 103.123341 27.055256 77.068085 52.0616705 1.716518099 -0.064153 24 61 SH5925 5925 snR36 snR36 81 102 28.83383 79.731398 54.282614 1.734660753 0.021793 24 62 SH11295 11295 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3361 3379 27.874907 64.77601 46.3254585 1.665819726 0.160244 24 63 SH642 642 Gln2 5' flank - tRNA15 5' flank 15 53.703652 118.855674 86.279663 1.93590844 -0.087923 24 64 SH5288 5288 snR30 snR30 291 303 37.085367 94.830368 65.9578675 1.819266606 0.046218 24 65 SH13876 13876 MT COB intronic 27.256962 105.178633 27.256962 78.921671 53.0893165 1.725007134 -0.073954 24 66 SH9803 9803 RUF4 3' 27.807926 82.448107 55.1280165 1.741372367 -0.080014 24 67 SH4944 4944 snR9 snR9 126 140 47.008916 103.557373 75.2831445 1.876697751 0.064869 24 68 SH19921 19921 YAL030W spliced 28.713864 73.78999 51.251927 1.709710199 0.091472 24 69 SH1698 1698 Leu6 tRNA 56 68 58.892216 109.12036 84.006288 1.924311795 0.165081 24 70 SH13846 13846 MT COB Cytbi2 27.565139 92.630766 27.565139 66.065627 46.815383 1.670388581 0.119807 24 71 SH20939 20939 YLR406C spliced 29.745491 77.507836 53.6266635 1.729380777 0.108763 24 72 SH16961 16961 YGR034W_7_555923_556666_INTRON_20_496 5' exon 28.858805 116.186164 28.858805 88.327359 58.593082 1.767846343 -0.095018 24 73 SH6823 6823 snR52 snR52 21 36 54.859299 126.101278 90.4802885 1.956553977 -0.182314 24 74 SH461 461 Asp1 3' flank 28.536066 79.333386 53.934726 1.731868477 0.007245 24 75 SH13667 13667 MT ATP6 ATP6 26.473179 101.880465 26.473179 76.407286 51.4402325 1.711302923 -0.097586 24 76 SH740 740 Gln4 5' flank 26.18513 75.740677 50.9629035 1.707254163 -0.110246 24 77 SH17083 17083 YHL001W_8_104270_105084_INTRON_130_527 exon/intron 28.07334 114.529355 28.07334 87.456015 57.7646775 1.761662353 -0.121154 24 78 SH11695 11695 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5361 5378 3481.762735 2490.177419 2985.970077 3.475085451 0.132452 24 79 SH9848 9848 RUF5-1 RUF5-1 46 65 30.400018 96.979648 63.689833 1.80407011 -0.16995 24 80 SH14192 14192 MT COB Exon6 32.865534 118.956357 32.865534 87.090823 59.9781785 1.777993272 0.100798 24 81 SH2846 2846 Pro7 tRNA-exon/intron 36 48 32.945846 83.133427 58.0396365 1.763724684 0.176006 24 82 SH12480 12480 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S/3' flank 35.403623 111.39965 35.403623 76.996027 56.199825 1.749734963 0.390946 24 83 SH6675 6675 snR49 5' 31.222236 98.2185 64.720368 1.811040978 -0.17216 24 84 SH13968 13968 MT COB Cytbi3 26.945987 105.198007 26.945987 79.25202 53.0990035 1.725086371 -0.099756 24 85 SH20459 20459 YGL178W spliced 29.140141 83.632975 56.386558 1.751175585 -0.006129 24 86 SH12197 12197 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7871 7889 28.773151 76.700271 52.736711 1.722113041 0.056629 24 87 SH7261 7261 snR65 snR65 81 100 26.146796 83.116156 54.631476 1.737442934 -0.204148 24 88 SH13432 13432 MT COX1 intronic 30.33982 128.635431 30.33982 99.295611 64.8177155 1.81169372 -0.218813 24 89 SH11254 11254 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3156 3169 32.902456 86.25225 59.577353 1.775081204 0.117269 24 90 SH16179 16179 YDR305C_4_1073479_1072737_INTRON_88_176 intron/exon 28.745905 116.410925 28.745905 88.66502 58.7054625 1.768678514 -0.106167 24 91 SH15084 15084 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.542596 91.417774 23.542596 68.875178 46.208887 1.664725508 -0.219933 24 92 SH13074 13074 MT COX1 COX1ai3 23.837048 101.754543 23.837048 78.917495 51.3772715 1.710771036 -0.330604 24 93 SH20506 20506 YGR027C spliced 23.884042 66.771818 45.32793 1.656365886 -0.161501 24 94 SH5803 5803 snR35 snR35 201 219 42.712582 126.009738 84.36116 1.926142543 -0.412667 24 95 SH12532 12532 MT_ORF6 + ORF7 (hypothetical) ORF6/7 34.985062 145.873121 34.985062 111.888059 73.4365605 1.865912328 -0.342881 24 96 SH15902 15902 YDL083C_4_307788_306925_INTRON_25_456 intron 36.570097 136.339796 36.570097 100.769699 68.669898 1.836766402 -0.090548 24 97 SH17835 17835 YKR094C_11_618384_617630_INTRON_9_376 intron 29.033868 112.381546 29.033868 84.347678 56.690773 1.753512379 -0.021533 24 98 SH5505 5505 snR32 186-188 + 3' 186 30.062928 79.972795 55.0178615 1.740503706 0.097418 24 99 SH15111 15111 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF3 exon3 32.845117 118.288462 32.845117 86.443345 59.644231 1.775568444 0.11151 24 100 SH14093 14093 MT COB Cytbi4 27.951757 104.088649 27.951757 77.136892 52.5443245 1.720525813 -0.003625 24 101 SH6766 6766 snR50 snR50 6 22 1702.104309 1929.602912 1815.853611 3.259080834 -0.399225 24 102 SH21702 21702 copy of SH10877 7642.523423 6466.734019 7054.628721 3.848474162 -0.355239 24 103 SH8278 8278 snoRNA cluster4 snR67/intergenic 42.230231 144.68904 42.230231 103.458809 72.84452 1.862396886 -0.02508 24 104 SH14152 14152 MT COB intronic 31.221217 112.056593 31.221217 81.835376 56.5282965 1.752265898 0.128388 25 2 SH1561 1561 Leu4 5' flank 31.743211 80.61935 56.1812805 1.749591634 0.17374 25 3 SH10186 10186 RUF6 RUF6 776 795 31.426439 81.18973 56.3080845 1.750570754 0.149411 25 4 SH11785 11785 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5811 5824 29865.19524 13766.35089 21815.77306 4.338770607 0.22775 25 5 SH21648 21648 copy of SH8563 30.477279 80.564712 55.5209955 1.744457244 0.115827 25 6 SH10309 10309 RUF7 RUF7 156 168 30.024486 85.524543 57.7745145 1.761736305 0.007865 25 7 SH16922 16922 YGL251C_7_31636_27921_INTRON_59_210 intron/exon 29.621871 114.924586 29.621871 86.302715 57.962293 1.763145558 -0.024216 25 8 SH6650 6650 snR48 snR48 76 93 29.461383 84.304806 56.8830945 1.754983214 0.004746 25 9 SH9896 9896 RUF5-1 RUF5-1 286 301 34.012835 103.678951 68.845893 1.837878038 -0.208897 25 10 SH511 511 Asp2 3' flank 34.4181 101.279406 67.848753 1.83154187 -0.151183 25 11 SH4103 4103 SRP RNA SRP RNA 406 422 30.266321 83.517374 56.8918475 1.755050037 0.055341 25 12 SH18673 18673 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.298565 119.732733 30.298565 90.434168 60.3663665 1.780795036 -0.066323 25 13 SH4820 4820 snR5 3' 32.264051 107.816455 70.040253 1.845347706 -0.333435 25 14 SH12017 12017 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6971 6992 27.394234 79.876621 53.6354275 1.729451747 -0.07653 25 15 SH4315 4315 telomerase RNA telomerase 611 627 29.017971 93.28706 61.1525155 1.786414326 -0.17217 25 16 SH8164 8164 snoRNA cluster 3; snR70 44.160283 199.867478 44.160283 156.707195 100.433739 2.001879631 -0.808961 25 17 SH19990 19990 YBL092W spliced 31.553172 148.915593 90.2343825 1.955372051 -1.013609 25 18 SH5928 5928 snR36 snR36 96 112 34.118966 80.343993 57.2314795 1.757634973 0.275633 25 19 SH7171 7171 snR64 5' 37.136412 95.392036 66.264224 1.821279116 0.035216 25 20 SH1818 1818 Leu8 3' flank 27.15041 64.877393 46.0139015 1.662889058 0.108028 25 21 SH252 252 Arg3 3' flank 31.690731 88.800795 60.245763 1.779926509 0.022 25 22 SH8156 8156 snoRNA cluster 3; intergenic/snR70 25.678817 90.164059 25.678817 65.485242 45.5820295 1.658793658 -0.006297 25 23 SH1475 1475 Leu2 3' flank 26.126441 85.035684 55.5810625 1.744926845 -0.228475 25 24 SH13449 13449 MT COX1 intronic 28.634606 116.134456 28.634606 88.49985 58.567228 1.767654669 -0.108475 25 25 SH16048 16048 YDL191W_4_117665_118518_INTRON_4_494 intron 28.656787 93.348792 28.656787 65.692005 47.174396 1.673706348 0.200044 25 26 SH10628 10628 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 26 46 26.225453 68.714978 47.4702155 1.676421203 -0.013869 25 27 SH1220 1220 Ile1 tRNA 61 73 31.43639 99.114213 65.2753015 1.814748886 -0.184752 25 28 SH749 749 Gln4 tRNA 16 32 27.744338 71.265496 49.504917 1.694648337 0.059584 25 29 SH1920 1920 Lys1 tRNA 56 68 36.281742 100.660114 68.470928 1.835506214 -0.094817 25 30 SH10068 10068 RUF6 RUF6 186 202 43.732205 106.420915 75.07656 1.875504365 -0.052382 25 31 SH11642 11642 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5096 5109 1043.281623 633.937711 838.609667 2.923559864 0.704008 25 32 SH20248 20248 YDR381C-A spliced 25.444455 83.160092 54.3022735 1.734818013 -0.255981 25 33 SH12992 12992 MT COX1 COX1ai2 27.814536 94.984622 27.814536 68.170086 47.992311 1.681171663 0.107062 25 34 SH19624 19624 RNA14 1.1 27.326313 75.373917 51.350115 1.710541421 -0.023436 25 35 SH12318 12318 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.625868 128.881737 31.625868 98.255869 64.9408685 1.812518092 -0.161954 25 36 SH14938 14938 MT tRNA Asn 3' 27.086173 96.753981 27.086173 70.667808 48.8769905 1.689104457 0.02143 25 37 SH15498 15498 YBL092W_2_45639_46364_INTRON_1_333 intron 29.983239 110.185561 29.983239 81.202322 55.5927805 1.745018396 0.077141 25 38 SH18101 18101 YLR367W_12_855877_857316_INTRON_698_1180 intron 30.498035 119.632364 30.498035 90.134329 60.316182 1.780433843 -0.052403 25 39 SH6440 6440 snR45 snR45 46 65 30.695085 79.233134 54.9641095 1.740079196 0.145931 25 40 SH16691 16691 YGL030W_7_439087_439634_INTRON_4_233 3' exon 33.033399 129.455477 33.033399 97.422078 65.2277385 1.814432321 -0.10743 25 41 SH2518 2518 Pro1 3' flank 30.351102 77.617213 53.9841575 1.732266328 0.145327 25 42 SH17814 17814 YKR057W_11_551293_551878_INTRON_25_346 intron 32.469603 124.725838 32.469603 93.256235 62.862919 1.798394543 -0.0334 25 43 SH6410 6410 snR43 3' 30.084803 87.482042 58.7834225 1.769254868 -0.024457 25 44 SH14429 14429 MT 21S rRNA 21S rRNA3 25.613478 99.982093 25.613478 75.368615 50.4910465 1.703214372 -0.148029 25 45 SH16977 16977 YGR034W_7_555923_556666_INTRON_20_496 intron 30.671572 116.965974 30.671572 87.294402 58.982987 1.770726762 0.004717 25 46 SH11455 11455 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4161 4174 124.524451 132.658696 128.5915735 2.109212511 0.596123 25 47 SH7926 7926 snoRNA cluster1 snR72 32.4917 118.745233 32.4917 87.253533 59.8726165 1.777228238 0.082599 25 48 SH16102 16102 YDR059C_4_569765_569229_INTRON_48_137 3' exon 36.652722 124.1863 36.652722 88.533578 62.59315 1.796526808 0.17571 25 49 SH16744 16744 YGL076C_7_365994_364333_INTRON_565_1032 intron 32.033655 123.579132 32.033655 92.545477 62.289566 1.794415305 -0.029418 25 50 SH5763 5763 snR35 snR35 1 18 27.886648 73.589738 50.738193 1.705334996 0.038641 25 51 SH10194 10194 RUF6 RUF6 816 834 28.204605 86.775928 57.4902665 1.759594322 -0.104548 25 52 SH5312 5312 snR30 snR30 411 427 30.508622 68.823884 49.666253 1.696061397 0.275465 25 53 SH10866 10866 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1216 1231 53.780469 110.128997 81.954733 1.91357404 0.061496 25 54 SH9176 9176 snR7 U5 RNA U5 151 165 64.151412 138.416372 101.283892 2.005540381 -0.202163 25 55 SH13683 13683 MT ORF 5 (hypothetical) 5' / ORF5 27.67966 100.211224 27.67966 73.531564 50.605612 1.704198681 0.025052 25 56 SH19931 19931 YBL026W spliced 30.269105 105.614262 67.9416835 1.832136304 -0.346083 25 57 SH6861 6861 snR56 5' 30.030717 66.451784 48.2412505 1.683418557 0.279196 25 58 SH5965 5965 snR36 snR36 281 300 27.147287 70.900257 49.023772 1.690406724 0.022619 25 59 SH9833 9833 RUF5-1 5' 102.288009 137.884509 120.086259 2.079493316 0.305569 25 60 SH10448 10448 RUF8 RUF8 166 184 27.140832 94.589876 60.865354 1.784370152 -0.283133 25 61 SH7361 7361 snR68 snR68 26 42 32.382612 91.533989 61.9583005 1.792099497 0.00216 25 62 SH7626 7626 snR189 3' 27.789091 77.015274 52.4021825 1.719349375 -0.013042 25 63 SH8974 8974 snR17a / U3a U3a 156 173 32.298311 95.754011 64.026161 1.806357462 -0.091595 25 64 SH12244 12244 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.251196 95.798576 27.251196 69.54738 48.399288 1.684838973 0.048464 25 65 SH3922 3922 RNase MRP RNaseMRP 26 44 29.359163 96.219966 62.7895645 1.797887471 -0.204412 25 66 SH6973 6973 snR60 5' 29.043712 70.720189 49.8819505 1.697943427 0.1551 25 67 SH13296 13296 MT COX1 COX1-ai5a 26.549784 96.402508 26.549784 70.852724 48.701254 1.687540144 -0.019597 25 68 SH15474 15474 YBL091C-A_2_46858_46559_INTRON_35_122 exon/intron 28.84797 102.148306 28.84797 74.300336 51.574153 1.712432104 0.09335 25 69 SH19544 19544 CBP1 1.2 29.17439 88.895908 59.035149 1.771110664 -0.090387 25 70 SH10380 10380 RUF7 3' 29.651134 87.45158 58.551357 1.767536965 -0.043352 25 71 SH12809 12809 MT COX1 COX1ai1 27.411455 96.377076 27.411455 69.965621 48.688538 1.687426734 0.054002 25 72 SH3530 3530 Tyr2 5' flank 26.988036 70.77346 48.880748 1.689137843 0.013007 25 73 SH12282 12282 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.988231 129.377628 35.988231 94.389397 65.188814 1.81417308 0.030015 25 74 SH232 232 Arg3 16-32 16 32 26.856645 80.267685 53.562165 1.728858123 -0.118763 25 75 SH21647 21647 copy of SH8562 31.32516 81.37378 56.34947 1.750889836 0.141587 25 76 SH12670 12670 MT_15S 3' 39.778173 138.878806 39.778173 100.100633 69.939403 1.844721921 -0.007623 25 77 SH10649 10649 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 131 144 3193.940389 1878.182262 2536.061326 3.404159751 0.466226 25 78 SH8318 8318 snoRNA cluster4 intergenic 29.922981 106.105264 29.922981 77.182283 53.552632 1.72878082 0.124186 25 79 SH7049 7049 snR62 snR62 36 57 32.809655 82.997121 57.903388 1.762703976 0.173001 25 80 SH13535 13535 MT COX1 intronic 26.580622 102.134165 26.580622 76.553543 51.5670825 1.712372561 -0.09162 25 81 SH1352 1352 Ile3 3' flank 29.063717 75.013389 52.038553 1.716325212 0.097827 25 82 SH14090 14090 MT COB Cytbi4 29.124719 115.286302 29.124719 87.161583 58.143151 1.764498564 -0.062189 25 83 SH16092 16092 YDR025W_4_491510_492319_INTRON_46_384 intron/exon 97.861325 227.901245 97.861325 131.03992 114.4506225 2.058618159 0.34752 25 84 SH21773 21773 copy of SH13813 27.299721 84.681332 55.9905265 1.748114551 -0.141525 25 85 SH18841 18841 YNL312W_14_48286_49215_INTRON_8_115 5' exon 29.510792 116.738735 29.510792 88.227943 58.8693675 1.76988937 -0.063375 25 86 SH20836 20836 YKR095W-A spliced 31.426309 96.872745 64.149527 1.807193458 -0.138576 25 87 SH9857 9857 RUF5-1 RUF5-1 91 108 30.903897 68.919796 49.9118465 1.698203637 0.298325 25 88 SH17105 17105 YHL001W_8_104270_105084_INTRON_130_527 3' exon 43.023609 141.169045 43.023609 99.145436 71.0845225 1.85177505 0.077249 25 89 SH3018 3018 Ser2 tRNA 51 63 35.292054 89.840061 62.5660575 1.796338789 0.113629 25 90 SH7269 7269 snR65 3' 26.589407 70.165819 48.377613 1.684644436 -0.007377 25 91 SH12100 12100 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7386 7403 59.144722 104.711825 81.9282735 1.913433803 0.249001 25 92 SH3495 3495 Tyr1 tRNA 16 32 332.894517 612.14448 472.5194985 2.674419734 -0.71636 25 93 SH17015 17015 YGR148C_7_788173_787307_INTRON_1_392 intron 30.627011 123.22823 30.627011 93.601219 62.114115 1.793190302 -0.105141 25 94 SH8418 8418 snoRNA cluster 5 snR190 30.242191 112.085161 30.242191 82.84297 56.5425805 1.752375625 0.066816 25 95 SH19065 19065 YOR293W_15_867094_867848_INTRON_53_489 intron 23.078864 101.342546 23.078864 79.263682 51.171273 1.709026221 -0.397054 25 96 SH2645 2645 Pro3 3' flank 21.00597 53.6156 37.310785 1.571834386 -0.158593 25 97 SH20544 20544 YGR214W spliced 22.661967 65.433025 44.047496 1.643921225 -0.239091 25 98 SH1542 1542 Leu3 3' flank 33.115017 87.012133 60.063575 1.778611178 0.112318 25 99 SH5194 5194 snR13 3' 33.885249 90.726228 62.3057385 1.794528048 0.058928 25 100 SH17782 17782 YKL180W_11_109271_110131_INTRON_310_615 intron 26.443271 98.994034 26.443271 73.550763 49.997017 1.698944094 -0.0632 25 101 SH5585 5585 snR33 3' 28.531019 77.751236 53.1411275 1.725430765 0.02708 25 102 SH20797 20797 YKL157W spliced 28.384685 75.287046 51.8358655 1.714630354 0.049637 25 103 SH2589 2589 Pro2 3' flank 31.604896 86.531449 59.0681725 1.771353535 0.058418 25 104 SH19141 19141 YPL075W_16_412249_415357_INTRON_9_759 intron 38.126939 135.628194 38.126939 98.501255 68.314097 1.834510332 -0.009284 26 2 SH19552 19552 CBP1 2.2 29.503195 98.22362 63.8634075 1.805252087 -0.229745 26 3 SH12568 12568 MT_15S MT_15S 29.286417 106.24715 29.286417 77.960733 53.623575 1.729355764 0.073624 26 4 SH564 564 Cys1 3' flank 35.980243 104.146645 70.063444 1.845491481 -0.171916 26 5 SH16280 16280 YDR447C_4_1355542_1354818_INTRON_4_317 intron 28.662798 104.924734 28.662798 77.261936 52.962367 1.723967386 0.042084 26 6 SH14832 14832 MT tRNA Asp 5' 25.930815 90.334541 25.930815 65.403726 45.6672705 1.659605055 0.013222 26 7 SH2092 2092 Lys4 3' flank 29.623773 90.762877 60.193325 1.779548334 -0.102081 26 8 SH8598 8598 snR19 / U1 RNA U1 486 498 40.130844 100.115689 70.1232665 1.845862138 -0.000671 26 9 SH5030 5030 snR10 snR10 181 197 29.448204 87.038721 58.2434625 1.765247185 -0.045223 26 10 SH19977 19977 YBL087C spliced 31.995167 88.81477 60.4049685 1.781072662 0.034553 26 11 SH5408 5408 snR31 snR31 106 127 25.585582 76.203409 50.8944955 1.706670814 -0.160698 26 12 SH19803 19803 Negative Control 34.4377 91.788828 63.113264 1.800120641 0.049106 26 13 SH1397 1397 Leu1 tRNA-intron 56 72 94.010186 153.483882 123.747034 2.092534798 0.021684 26 14 SH20185 20185 YDL191W spliced 34.233597 105.924956 70.0792765 1.84558961 -0.24778 26 15 SH11187 11187 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2821 2839 27.2918 88.564021 57.9279105 1.762887863 -0.186957 26 16 SH8790 8790 LSR1 / U2 RNA U2 591 607 137.650604 237.107712 187.379158 2.272721283 -0.273052 26 17 SH19271 19271 YPL143W_16_282121_282969_INTRON_20_544 intron 27.77711 157.655808 27.77711 130.878698 79.327904 1.89942598 -0.856062 26 18 SH13370 13370 MT COX1 intronic 23.793001 92.46461 23.793001 69.671609 46.732305 1.669617202 -0.211841 26 19 SH4808 4808 snR5 3' 28.174396 72.655984 50.41519 1.702561408 0.070664 26 20 SH1942 1942 Lys2 5' flank 25.826588 71.712749 48.7696685 1.688149804 -0.08436 26 21 SH6367 6367 snR43 snR43 76 92 27.794713 87.978588 57.8866505 1.762578421 -0.145912 26 22 SH1247 1247 Ile2 5' flank 53.362892 109.938211 81.6505515 1.911959122 0.057989 26 23 SH2569 2569 Pro2 tRNA 81 95 33.771592 82.242547 58.0070695 1.763480926 0.225806 26 24 SH8549 8549 snR19 / U1 RNA U1 241 253 36.219235 97.530457 66.874846 1.825262795 -0.031087 26 25 SH18390 18390 YMR116C_13_500687_499455_INTRON_538_810 intron 27.761482 115.563167 27.761482 88.801685 58.2815835 1.765531343 -0.15749 26 26 SH4126 4126 SRP RNA SRP RNA 521 533 50.387801 113.97612 82.1819605 1.914776497 -0.065109 26 27 SH8481 8481 snR19 / U1 RNA 5' 25.743606 68.46613 47.104868 1.673065791 -0.0461 26 28 SH20149 20149 YDL115C spliced 36.641161 103.134929 69.888045 1.844402892 -0.136804 26 29 SH7445 7445 snR69 3' 25.700594 66.084338 45.892466 1.661741395 -0.013967 26 30 SH9218 9218 snR6 / U6 RNA 5' 26.154742 70.331137 48.2429395 1.683433762 -0.041377 26 31 SH16741 16741 YGL076C_7_365994_364333_INTRON_565_1032 intron 27.053835 121.682903 27.053835 95.629068 61.3414515 1.787754048 -0.304333 26 32 SH4500 4500 U3b (snR17b) U3b 56 73 30.236377 88.711985 59.474181 1.77432847 -0.039329 26 33 SH3451 3451 Trp1 tRNA 86 101 32.835791 82.677961 57.756876 1.761603695 0.180027 26 34 SH7628 7628 snR189 3' 27.727483 74.659924 51.1937035 1.709216549 0.013763 26 35 SH17792 17792 YKL186C_11_93537_92746_INTRON_71_233 intron 27.127859 103.736708 27.127859 77.608849 52.368354 1.719068924 -0.066105 26 36 SH11378 11378 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3776 3789 19552.17091 9835.535008 14693.85296 4.16713569 0.206011 26 37 SH21816 21816 copy of SH15701 26.872181 69.865929 48.369055 1.684567603 0.017106 26 38 SH12778 12778 MT COX1 COX1ai1 27.461274 100.855385 27.461274 74.394111 50.9276925 1.706953999 -0.001393 26 39 SH12027 12027 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7021 7041 27.844616 75.829973 51.8372945 1.714642327 0.006248 26 40 SH5979 5979 snR36 351-355 + 3' 351 368 25.501672 73.842462 49.672067 1.696112233 -0.136824 26 41 SH7735 7735 snoRNA cluster1 intergenic 27.651007 96.311937 27.651007 69.66093 48.6559685 1.687136122 0.074947 26 42 SH17357 17357 YIL052C_9_257061_256224_INTRON_38_509 exon/intron 27.511422 112.63484 27.511422 86.123418 56.81742 1.754481509 -0.143877 26 43 SH19880 19880 Negative Control 34.786345 80.764985 57.775665 1.761744953 0.293475 26 44 SH17315 17315 YHR203C_8_505526_504472_INTRON_15_283 intron 28.128616 102.785928 28.128616 75.657312 51.892964 1.715108477 0.02765 26 45 SH13475 13475 MT COX1 intronic 28.518786 112.669934 28.518786 85.151148 56.834967 1.754615612 -0.064751 26 46 SH10252 10252 RUF6 3' 26.057285 71.195865 48.626575 1.686873681 -0.060292 26 47 SH1304 1304 Ile3 5' flank 27.865154 82.282768 55.073961 1.740946313 -0.07413 26 48 SH11091 11091 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2341 2354 742.463769 659.227958 700.8458635 2.845622514 0.198215 26 49 SH19997 19997 YBR048W spliced 69.793412 121.121801 95.4576065 1.979810541 0.131849 26 50 SH21574 21574 copy of SH5620 32.483693 85.933926 59.2088095 1.772386329 0.105844 26 51 SH13020 13020 MT COX1 COX1ai2 28.07465 114.420707 28.07465 87.346057 57.7103535 1.761253735 -0.119806 26 52 SH5075 5075 snR11 5' 29.174378 70.073731 49.6240545 1.695692245 0.172556 26 53 SH10052 10052 RUF6 RUF6 106 123 29.89833 92.70148 61.299905 1.787459801 -0.122427 26 54 SH12997 12997 MT COX1 COX1ai2 36.853855 136.880509 36.853855 101.026654 68.9402545 1.838472882 -0.089441 26 55 SH6037 6037 snR37 snR37 101 115 63.60177 123.151771 93.3767705 1.970238849 0.008158 26 56 SH11835 11835 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6061 6074 416.575321 390.899264 403.7372925 2.606098866 0.291484 26 57 SH19015 19015 YOR182C_15_678792_678190_INTRON_4_414 intron 27.529105 105.001428 27.529105 78.472323 53.000714 1.72428172 -0.049518 26 58 SH868 868 Glu2 3' flank 30.643651 90.08676 60.3652055 1.780786683 -0.045211 26 59 SH21814 21814 copy of SH15699 38.472561 98.200145 68.336353 1.834651797 0.004456 26 60 SH2813 2813 Pro6 3' flank 27.019046 74.050964 50.535005 1.703592313 -0.028222 26 61 SH5130 5130 snR11 251-258 + 3' 251 29.744935 85.673678 57.7093065 1.761245855 -0.00735 26 62 SH16446 16446 YER074W_5_306319_307192_INTRON_4_469 intron 27.542009 98.254517 27.542009 71.712508 49.6272585 1.695720285 0.039488 26 63 SH8937 8937 snR17a / U3a 5' 32.087083 73.166524 52.6268035 1.721206992 0.309249 26 64 SH11151 11151 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2641 2659 33032.73288 16587.67029 24810.20158 4.394630293 0.065016 26 65 SH1018 1018 Gly2 3' flank 33.871568 93.256981 63.5642745 1.803213094 0.002714 26 66 SH16968 16968 YGR034W_7_555923_556666_INTRON_20_496 intron 33.773087 126.801687 33.773087 94.0286 63.9008435 1.805506591 -0.016507 26 67 SH1065 1065 Gly3 61-71 + 3' flank 61 29.017755 86.600607 57.809181 1.761996817 -0.057125 26 68 SH21605 21605 copy of SH6881 26.43437 76.516077 51.4752235 1.711598241 -0.101776 26 69 SH19846 19846 Negative Control 33.038166 95.496271 64.2672185 1.807989504 -0.066763 26 70 SH10280 10280 RUF7 RUF7 11 30 28.942815 89.584251 59.263533 1.772787538 -0.112986 26 71 SH6062 6062 snR37 snR37 226 245 27.115094 79.192506 53.1538 1.725534318 -0.087216 26 72 SH112 112 Arg1 5' flank 38.891522 95.145481 67.0185015 1.826194713 0.078547 26 73 SH4824 4824 snR8 5' 29.579732 91.157696 60.368714 1.780811924 -0.110787 26 74 SH12467 12467 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 706.535444 1551.722919 706.535444 846.187475 776.3614595 2.890063968 -0.261256 26 75 SH14675 14675 MT 21S rRNA 21S rRNA4 27.160949 97.23536 27.160949 71.074411 49.11768 1.691237845 0.021234 26 76 SH4369 4369 telomerase RNA telomerase 881 898 28.510314 91.076943 59.7936285 1.776654909 -0.158701 26 77 SH2475 2475 Phe5 3' flank 29.862849 76.321565 53.092207 1.725030779 0.131624 26 78 SH15699 15699 YBR220C_2_663261_662457_INTRON_302_722 intron 38.837537 132.898366 38.837537 95.060829 66.949183 1.825745282 0.07924 26 79 SH13599 13599 MT ATP8/AAP1 ATP8 26.136846 105.541428 26.136846 80.404582 53.270714 1.726488518 -0.171657 26 80 SH917 917 Glu3 3' flank 26.979289 71.99841 49.4888495 1.694507358 -0.004084 26 81 SH4806 4806 snR5 201-204 + 3' 201 27.312342 72.476141 49.8942415 1.698050425 0.013198 26 82 SH10837 10837 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1071 1087 76.559253 118.101406 97.3303295 1.988248194 0.274619 26 83 SH10105 10105 RUF6 RUF6 371 388 29.910906 85.178752 57.544829 1.760006304 0.00906 26 84 SH9483 9483 RUF2 256-268 + 3' 256 34.771793 85.561415 60.166604 1.779355499 0.200024 26 85 SH14054 14054 MT COB Cytbi4 29.798729 102.083279 29.798729 73.28455 51.5416395 1.712158229 0.168229 26 86 SH8201 8201 snoRNA cluster 3; intergenic 31.74765 115.066385 31.74765 84.318735 58.0331925 1.763676462 0.104522 26 87 SH21561 21561 copy of SH4991 26.767616 71.538476 49.153046 1.691550436 -0.013103 26 88 SH6272 6272 snR42 snR42 141 157 26.533075 73.764716 50.1488955 1.700261372 -0.059458 26 89 SH8088 8088 snoRNA cluster 2 3' 26.582138 100.46057 26.582138 74.878432 50.730285 1.705267302 -0.07028 26 90 SH2003 2003 Lys3 5' flank 28.807077 80.501451 54.654264 1.73762405 0.010421 26 91 SH7069 7069 snR62 3' 30.377055 129.213228 79.7951415 1.901976449 -0.756029 26 92 SH8301 8301 snoRNA cluster4 intergenic 31.523254 129.828694 31.523254 99.30544 65.414347 1.81567301 -0.186308 26 93 SH5845 5845 snR35 snR35 411 430 24.432538 66.243075 45.3378065 1.656460505 -0.110982 26 94 SH21101 21101 YNL050C spliced 23.813811 81.459878 52.6368445 1.721289846 -0.362908 26 95 SH9785 9785 RUF4 RUF4 701 722 24.489655 59.171391 41.830523 1.621493295 0.008624 26 96 SH13407 13407 MT COX1 intronic 34.859347 120.125198 34.859347 86.265851 60.562599 1.782204504 0.185523 26 97 SH14514 14514 MT 21S rRNA 21S rRNA3 29.035563 106.942707 29.035563 78.907144 53.9713535 1.732163309 0.045334 26 98 SH18995 18995 YOR122C_15_552886_552297_INTRON_14_222 intron 44.801581 141.750881 44.801581 97.9493 71.3754405 1.853548802 0.136576 26 99 SH2953 2953 Ser1 5' flank - tRNA12 12 65.692031 136.793242 101.2426365 2.005363446 -0.155725 26 100 SH9614 9614 RUF3 3' 29.85004 83.915341 56.8826905 1.75498013 0.02945 26 101 SH3452 3452 Trp1 91-106 + 3' flank 91 27.449169 80.273576 53.8613725 1.731277416 -0.077719 26 102 SH21047 21047 YMR142C spliced 29.910591 81.070742 55.4906665 1.744219941 0.074194 26 103 SH11411 11411 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3941 3957 30.118225 81.109859 55.614042 1.745184461 0.086746 26 104 SH14625 14625 MT 21S rRNA Sce1 endonuc 32.671492 125.513211 32.671492 93.841719 63.2566055 1.801105883 -0.040811 27 2 SH17352 17352 YIL018W_9_316766_317930_INTRON_5_404 intron/exon 29.656604 106.91118 29.656604 78.254576 53.95559 1.732036446 0.093524 27 3 SH9679 9679 RUF4 RUF4 171 190 27.150892 84.717046 55.933969 1.747675637 -0.152247 27 4 SH12535 12535 MT_ORF6 + ORF7 (hypothetical) ORF6/7 29.247924 101.837361 29.247924 73.589437 51.4186805 1.711120928 0.128919 27 5 SH2833 2833 Pro7 5' flank 28.882061 81.954338 55.4181995 1.743652412 -0.00259 27 6 SH15761 15761 YCR031C_3_178212_177492_INTRON_8_314 intron 30.562161 117.661613 30.562161 88.099452 59.3308065 1.773280252 -0.014267 27 7 SH897 897 Glu3 5' flank - tRNA15 15 92.670799 105.071886 98.8713425 1.995070431 0.688907 27 8 SH17610 17610 YJL205C-A_10_50443_50139_INTRON_33_175 3' exon 38.530581 129.600095 38.530581 92.069514 65.3000475 1.814913497 0.138661 27 9 SH1559 1559 Leu4 5' flank 25.571223 65.311134 45.4411785 1.657449586 -0.01144 27 10 SH14417 14417 MT 21S rRNA 21S rRNA3 25.715197 101.014802 25.715197 76.299605 51.007401 1.707633195 -0.152177 27 11 SH21159 21159 YNL301C spliced 34.448955 82.174334 58.3116445 1.76575529 0.253669 27 12 SH17029 17029 YGR183C_7_859471_859058_INTRON_4_216 5' exon 32.351075 118.32377 32.351075 86.972695 59.661885 1.775696971 0.081781 27 13 SH2832 2832 Pro7 5' flank 25.946212 69.946033 47.9461225 1.680753491 -0.051524 27 14 SH17107 17107 YHR001W-A_8_107819_108115_INTRON_7_69 5' exon 30.30565 110.29406 30.30565 80.98841 55.64703 1.74544199 0.099935 27 15 SH17872 17872 YLL050C_12_40413_39803_INTRON_15_193 3' exon 32.082908 110.830773 32.082908 79.747865 55.9153865 1.747531331 0.204801 27 16 SH7551 7551 snR79 3' 27.534669 75.61392 51.5742945 1.712433296 -0.011987 27 17 SH12421 12421 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.913344 115.755532 27.913344 88.842188 58.377766 1.766247471 -0.148592 27 18 SH18103 18103 YLR367W_12_855877_857316_INTRON_698_1180 intron 28.350029 102.576613 28.350029 75.226584 51.7883065 1.71423171 0.04814 27 19 SH18607 18607 YNL069C_14_494998_493953_INTRON_29_477 intron 28.527697 122.455862 28.527697 94.928165 61.727931 1.790481721 -0.221954 27 20 SH10575 10575 RUF8 RUF8 801 815 39.870941 91.554463 65.712702 1.817649325 0.178366 27 21 SH940 940 Gly1 5' flank 23.519277 67.267178 45.3932275 1.656991063 -0.197779 27 22 SH4898 4898 snR8 3' 44.423251 97.748189 71.08572 1.851782367 0.133476 27 23 SH21269 21269 YPL081W spliced 34.903788 97.500161 66.2019745 1.820870943 -0.061982 27 24 SH20146 20146 YDL115C spliced 26.865529 80.086917 53.476223 1.728160726 -0.115883 27 25 SH18903 18903 YOL120C_15_94401_93394_INTRON_113_559 intron 29.826822 108.99836 29.826822 80.171538 54.99918 1.740356215 0.080077 27 26 SH12536 12536 MT_ORF6 + ORF7 (hypothetical) ORF6/7 30.393182 116.049682 30.393182 86.6565 58.524841 1.767340242 0.00386 27 27 SH862 862 Glu2 3' flank 26.087215 70.423943 48.255579 1.683547531 -0.047621 27 28 SH4935 4935 snR9 snR9 81 98 36.028538 106.405066 71.216802 1.852582468 -0.215062 27 29 SH16615 16615 YFL039C_6_54695_53260_INTRON_11_318 exon/intron 26.161849 99.297698 26.161849 74.135849 50.148849 1.70026097 -0.091409 27 30 SH18525 18525 YMR225C_13_721402_720959_INTRON_59_205 intron 33.430461 124.901357 33.430461 92.470896 62.9506785 1.799000415 0.0087 27 31 SH8470 8470 snoRNA cluster 5 3' 36.620187 131.13773 36.620187 95.517543 66.068865 1.819996846 0.020767 27 32 SH2545 2545 Pro2 5' flank 27.794475 73.26763 50.5310525 1.703558344 0.036475 27 33 SH5530 5530 snR33 5' 27.920069 85.321301 56.620685 1.752975119 -0.106727 27 34 SH10743 10743 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 601 617 29.940639 81.436473 55.688556 1.745765957 0.07158 27 35 SH13022 13022 MT COX1 COX1ai2 26.810911 103.270699 26.810911 77.459788 52.1353495 1.717132289 -0.086323 27 36 SH14494 14494 MT 21S rRNA 21S rRNA3 46.521465 150.322403 46.521465 104.800938 75.6612015 1.878873234 0.031724 27 37 SH15185 15185 MT COX3 cox3 30.33557 105.665509 30.33557 76.329939 53.3327545 1.726994014 0.161107 27 38 SH5094 5094 snR11 snR11 71 87 74.102905 138.298737 106.200821 2.026127874 -0.050219 27 39 SH21256 21256 YPL075W spliced 33.807075 93.242229 63.524652 1.802942295 0.001407 27 40 SH17923 17923 YLR078C_12_286560_285737_INTRON_4_92 exon/intron 232.243247 458.580787 232.243247 227.33754 229.7903935 2.361331869 0.435192 27 41 SH18865 18865 YNR053C_14_723108_721117_INTRON_811_1341 intron 28.777658 109.418398 28.777658 81.64074 55.209199 1.742011446 -0.005575 27 42 SH13574 13574 MT COX1 Exon 6 26.605037 103.09929 26.605037 77.494253 52.049645 1.716417772 -0.101572 27 43 SH1736 1736 Leu7 5' flank 27.145139 83.105683 55.125411 1.74135184 -0.13342 27 44 SH39 39 Ala1 3' flank 37.368356 99.343718 68.356037 1.834776876 -0.043385 27 45 SH15642 15642 YBR186W_2_600511_602318_INTRON_1552_1664 3' exon 30.70019 124.620435 30.70019 94.920245 62.8102175 1.798030297 -0.123594 27 46 SH8135 8135 snoRNA cluster 3; snR41/intergenic 30.588491 109.600644 30.588491 80.012153 55.300322 1.74272766 0.12958 27 47 SH18671 18671 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.599685 101.960699 27.599685 75.361014 51.4803495 1.711641487 -0.004189 27 48 SH9128 9128 snR7 U5 RNA 5' 29.380817 91.382294 60.3815555 1.780904297 -0.123625 27 49 SH3161 3161 Ser5 5' flank 31.724249 93.295787 62.510018 1.795949624 -0.054111 27 50 SH10532 10532 RUF8 RUF8 586 607 27.512818 73.783445 50.6481315 1.704563428 0.010128 27 51 SH21196 21196 YOL121C spliced 30.269495 88.28468 59.2770875 1.772886857 -0.030394 27 52 SH1268 1268 Ile2 tRNA exon/intron 36 52 30.329501 80.37956 55.3545305 1.743153172 0.108972 27 53 SH18674 18674 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.99863 102.124839 29.99863 73.126209 51.5624195 1.712333288 0.182992 27 54 SH18373 18373 YMR079W_13_424988_426058_INTRON_10_165 intron/exon 80.365626 229.88582 80.365626 150.520194 115.44291 2.062367266 -0.116764 27 55 SH15455 15455 YBL087C_2_60732_59815_INTRON_43_546 intron 31.92896 123.664542 31.92896 92.735582 62.332271 1.79471295 -0.036383 27 56 SH10959 10959 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1681 1701 9479.205469 6377.44345 7928.32446 3.899181415 -0.052675 27 57 SH2064 2064 Lys4 5' flank - tRNA3 3 34.65194 103.598838 69.125389 1.839637588 -0.191987 27 58 SH8152 8152 snoRNA cluster 3; intergenic 27.119118 104.70506 27.119118 78.585942 52.85253 1.723065781 -0.079238 27 59 SH21049 21049 YMR142C spliced 26.781917 69.161274 47.9715955 1.680984163 0.020354 27 60 SH10564 10564 RUF8 RUF8 746 761 33.720327 79.783636 56.7519815 1.75398103 0.27073 27 61 SH16477 16477 YER102W_5_362729_363698_INTRON_1_360 intron 32.88512 127.002955 32.88512 95.117835 64.0014775 1.80619 -0.062669 27 62 SH2735 2735 Pro5 tRNA-intron/exon 56 71 67.558601 197.474262 132.5164315 2.122269732 -0.792172 27 63 SH15530 15530 YBR048W_2_332790_333771_INTRON_46_556 3' exon 52.63705 153.776334 52.63705 102.139284 77.388167 1.88867456 0.19235 27 64 SH16062 16062 YDL219W_4_65243_65766_INTRON_66_136 intron/exon 29.241981 100.649606 29.241981 72.407625 50.824803 1.706075704 0.144746 27 65 SH2159 2159 Met2 5' flank 26.841715 82.546382 54.6940485 1.737940071 -0.147838 27 66 SH15221 15221 MT COX3 cox3 26.824602 91.602606 26.824602 65.778004 46.301303 1.665593213 0.071549 27 67 SH11531 11531 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4541 4558 1130.753932 917.394829 1024.074381 3.010331501 0.227871 27 68 SH4092 4092 SRP RNA SRP RNA 351 367 26.047531 66.648443 46.347987 1.666030876 0.002458 27 69 SH7394 7394 snR68 3' 48.044188 103.790959 75.9175735 1.880342319 0.07897 27 70 SH12827 12827 MT COX1 COX1ai1 28.331384 96.464808 28.331384 69.133424 48.732404 1.687817836 0.129054 27 71 SH10104 10104 RUF6 RUF6 366 385 29.200392 67.712355 48.4563735 1.685350908 0.207166 27 72 SH17572 17572 YJL189W_10_75932_76473_INTRON_7_392 3' exon 29.745688 116.103953 29.745688 87.358265 58.5519765 1.76754156 -0.037439 27 73 SH8247 8247 snoRNA cluster4 5' 27.762519 100.833106 27.762519 74.070587 50.916553 1.706858995 0.0238 27 74 SH21230 21230 YOR234C spliced 30.421246 92.124384 61.272815 1.787267833 -0.089561 27 75 SH13898 13898 MT COB intronic 25.324104 101.267099 25.324104 76.942995 51.1335495 1.708705941 -0.189749 27 76 SH10424 10424 RUF8 RUF8 46 63 33.570569 78.416431 55.9935 1.748137615 0.291512 27 77 SH881 881 Glu3 5' flank 32.374763 86.484341 59.429552 1.774002456 0.091472 27 78 SH7760 7760 snoRNA cluster1 snR76 29.832003 110.737202 29.832003 81.905199 55.868601 1.747167796 0.058984 27 79 SH19343 19343 YPL249C-A_16_76239_75699_INTRON_17_254 5' exon 127.904244 309.749178 127.904244 182.844934 155.374589 2.191379993 0.078551 27 80 SH11839 11839 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6081 6098 868.479163 785.612555 827.045859 2.917529591 0.125782 27 81 SH5616 5616 snR34 snR34 1 17 29.775974 69.728521 49.7522475 1.696812704 0.216591 27 82 SH21416 21416 Ser4 spliced 34.953518 82.349455 58.6514865 1.768279024 0.269837 27 83 SH9675 9675 RUF4 RUF4 151 166 28.005035 89.99257 58.9988025 1.770843197 -0.164105 27 84 SH13561 13561 MT COX1 Exon 6 28.072038 96.878802 28.072038 69.806764 48.939401 1.689658649 0.102043 27 85 SH15981 15981 YDL136W_4_217600_218367_INTRON_4_408 intron 30.143244 117.240408 30.143244 88.097164 59.120204 1.771735924 -0.032699 27 86 SH6339 6339 snR43 5' 29.641593 93.50192 61.5717565 1.789381543 -0.14727 27 87 SH3832 3832 RNaseP RNaseP 126 142 29.129378 77.0284 53.078889 1.724921824 0.075539 27 88 SH9264 9264 snR6 / U6 RNA 3' 26.573766 73.63353 50.103648 1.699869348 -0.054799 27 89 SH21653 21653 copy of SH8773 28.81313 75.005846 51.909488 1.715246745 0.081611 27 90 SH8711 8711 LSR1 / U2 RNA U2 196 212 28.602033 68.885718 48.7438755 1.687920056 0.150808 27 91 SH8136 8136 snoRNA cluster 3; snR41/intergenic 27.824896 86.51769 27.824896 59.692794 43.758845 1.64106585 0.237847 27 92 SH18955 18955 YOL127W_15_80347_81189_INTRON_14_427 intron 40.043551 120.860031 40.043551 81.81648 60.9300155 1.784831289 0.411562 27 93 SH12534 12534 MT_ORF6 + ORF7 (hypothetical) ORF6/7 30.862178 128.405704 30.862178 98.543526 64.702852 1.810923424 -0.188783 27 94 SH20758 20758 YJR094W-A spliced 1111.876294 1144.387042 1128.131668 3.052359791 -0.141229 27 95 SH12134 12134 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7556 7569 26.937213 88.443272 57.6902425 1.761102365 -0.210231 27 96 SH12213 12213 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.046092 136.876973 36.046092 101.830881 68.9384865 1.838461745 -0.12403 27 97 SH3379 3379 Thr4 5' flank - tRNA1 1 23.954529 75.555146 49.7548375 1.696835312 -0.279356 27 98 SH12289 12289 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.46011 98.543497 26.46011 73.083387 49.7717485 1.696982898 -0.055857 27 99 SH21454 21454 copy of SH463 34.485494 96.682024 65.583759 1.816796305 -0.055175 27 100 SH1340 1340 Ile3 tRNA-intron 81 97 29.171061 78.21975 53.6954055 1.729937126 0.062866 27 101 SH10632 10632 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 46 62 25.539521 79.691728 52.6156245 1.721114729 -0.207118 27 102 SH19689 19689 Negative Control 27.391944 74.936413 51.1641785 1.708966005 -0.013231 27 103 SH17974 17974 YLR211C_12_564531_563792_INTRON_19_77 5' exon 27.721932 100.271948 27.721932 73.550016 50.635974 1.704459168 0.02775 27 104 SH12970 12970 MT COX1 COX1ai2 28.186133 105.310846 28.186133 78.124713 53.155423 1.725547579 -0.000632 28 2 SH15865 15865 YDL079C_4_314747_312950_INTRON_413_704 intron 29.616007 102.489485 29.616007 73.873478 51.7447425 1.71386623 0.148626 28 3 SH15510 15510 YBR048W_2_332790_333771_INTRON_46_556 intron 31.887298 122.872419 31.887298 91.985121 61.9362095 1.791944623 -0.024226 28 4 SH879 879 Glu3 5' flank 29.242496 79.528531 54.3855135 1.735483233 0.050861 28 5 SH4751 4751 snR5 5' 219.855442 326.071695 272.9635685 2.436104687 -0.225179 28 6 SH7552 7552 snR79 3' 27.900851 84.43534 56.1680955 1.749489698 -0.097574 28 7 SH1324 1324 Ile3 tRNA 1 13 27.616732 70.650661 49.1336965 1.691379439 0.059021 28 8 SH977 977 Gly1 3' flank 25.618092 69.346531 47.4823115 1.676531853 -0.067773 28 9 SH5395 5395 snR31 snR31 41 59 27.987292 67.760245 47.8737685 1.680097615 0.124773 28 10 SH15232 15232 MT COX3 cox3 / 3' 30.074901 120.954091 30.074901 91.87919 60.9770455 1.785166378 -0.100763 28 11 SH18826 18826 YNL302C_14_62942_61957_INTRON_21_571 intron 32.165474 112.481775 32.165474 81.316301 56.7408875 1.753896124 0.178111 28 12 SH18863 18863 YNR053C_14_723108_721117_INTRON_811_1341 intron 28.033014 104.166425 28.033014 77.133411 52.5832125 1.720847115 0.00189 28 13 SH5199 5199 snR13 3' 28.423275 74.052447 51.237861 1.709590991 0.068752 28 14 SH20191 20191 YDL219W spliced 26.140272 87.55845 56.849361 1.754725587 -0.256749 28 15 SH11073 11073 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2251 2268 27.780487 64.613667 46.197077 1.664614498 0.156118 28 16 SH17822 17822 YKR057W_11_551293_551878_INTRON_25_346 intron 44.909279 148.401905 44.909279 104.492626 74.7009525 1.873326139 0.007471 28 17 SH14384 14384 MT ORF9 and ORF10 (hypothetical) 3' 25.13118 98.845763 25.13118 74.714583 49.9228815 1.698299644 -0.176274 28 18 SH5516 5516 snR32 3' 31.930937 70.21416 51.0725485 1.70818753 0.341296 28 19 SH12529 12529 MT_ORF6 + ORF7 (hypothetical) ORF6/7 25.702895 92.375625 25.702895 67.67273 46.6878125 1.669203526 -0.037937 28 20 SH6387 6387 snR43 snR43 176 193 25.848076 65.455152 45.651614 1.659456137 0.00645 28 21 SH15459 15459 YBL087C_2_60732_59815_INTRON_43_546 intron 25.332773 101.750831 25.332773 77.418058 51.3754155 1.710755347 -0.194996 28 22 SH1663 1663 Leu5 3' flank 26.47959 67.595048 47.037319 1.67244256 0.020471 28 23 SH5643 5643 snR34 snR34 136 153 26.058505 69.794267 47.926386 1.680574681 -0.041123 28 24 SH2736 2736 Pro5 tRNA-intron/exon 61 75 34.285644 108.297605 71.2916245 1.853038511 -0.292222 28 25 SH4805 4805 snR5 196-204 + 3' 196 28.111278 68.526515 48.3188965 1.684117007 0.122495 28 26 SH19926 19926 YBL018C spliced 26.69111 79.424724 53.057917 1.724750196 -0.119842 28 27 SH14363 14363 MT ORF9 and ORF10 (hypothetical) ORF9 26.724899 97.756337 26.724899 72.031438 49.3781685 1.693534977 -0.022769 28 28 SH20739 20739 YJL191W spliced 33.210352 91.615447 62.4128995 1.795274359 0.021927 28 29 SH2412 2412 Phe4 3' flank 28.732385 71.547353 50.139869 1.700183195 0.123187 28 30 SH8816 8816 LSR1 / U2 RNA U2 721 738 29.191591 93.167125 61.179358 1.786604915 -0.162196 28 31 SH10154 10154 RUF6 RUF6 616 637 27.426447 89.222892 58.3246695 1.765852287 -0.185105 28 32 SH13859 13859 MT COB Cytbi2 27.707919 104.841457 27.707919 78.133538 52.9207285 1.723625814 -0.032987 28 33 SH21092 21092 YNL012W spliced 32.411419 98.72923 65.5703245 1.816707333 -0.150742 28 34 SH17239 17239 YHR079C-A_8_262554_262193_INTRON_114_199 intron 29.782743 110.920656 29.782743 82.137913 55.960328 1.747880251 0.05303 28 35 SH21151 21151 YNL265C spliced 29.122779 69.106616 49.1146975 1.691211474 0.182483 28 36 SH21091 21091 YNL012W spliced 35.016483 99.520309 67.268396 1.827811072 -0.100871 28 37 SH16897 16897 YGL226C-A_7_73156_72747_INTRON_22_170 intron 36.877609 129.625855 36.877609 93.748246 65.3129275 1.81499915 0.064722 28 38 SH6828 6828 snR52 snR52 46 64 28.225075 82.816677 55.520876 1.74445631 -0.056425 28 39 SH4361 4361 telomerase RNA telomerase 841 853 30.721146 95.76824 63.244693 1.801024089 -0.13644 28 40 SH21104 21104 YNL050C spliced 28.089268 86.964239 57.5267535 1.759869865 -0.114439 28 41 SH18753 18753 YNL162W_14_331319_332151_INTRON_5_516 intron 36.338264 123.138336 36.338264 87.800072 62.069168 1.792875924 0.18524 28 42 SH1755 1755 Leu7 tRNA 71 83 43.22877 92.156444 67.692607 1.83054124 0.231376 28 43 SH20887 20887 YLR275W spliced 24.164664 64.374052 44.269358 1.646103224 -0.102504 28 44 SH15077 15077 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.033216 92.718969 25.033216 68.685753 46.8594845 1.670797507 -0.102382 28 45 SH4588 4588 U3b (snR17b) 3' 25.413555 74.381027 49.897291 1.698076968 -0.150463 28 46 SH197 197 Arg2 3' flank 27.420225 75.133979 51.277102 1.709923472 -0.01377 28 47 SH20583 20583 YHR016C spliced 33.681818 100.802233 67.2420255 1.827640787 -0.160076 28 48 SH5811 5811 snR35 snR35 241 259 28.697729 83.450685 56.074207 1.748763141 -0.032769 28 49 SH16285 16285 YDR447C_4_1355542_1354818_INTRON_4_317 3' exon 33.51835 126.637891 33.51835 94.119541 63.8189455 1.804949624 -0.024941 28 50 SH342 342 Arg5 tRNA 46 60 27.224494 74.116061 50.6702775 1.704753283 -0.014477 28 51 SH17371 17371 YIL052C_9_257061_256224_INTRON_38_509 intron 34.8919 127.443935 34.8919 93.552035 64.2219675 1.807683606 0.021667 28 52 SH14955 14955 MT tRNA Met 3' 28.06383 103.77773 28.06383 76.7139 52.388865 1.71923899 0.00942 28 53 SH7542 7542 snR79 snR79 51 68 30.378881 96.366683 63.372782 1.801902773 -0.161072 28 54 SH3103 3103 Ser4 5' flank 31.28386 81.490433 56.3871465 1.751180117 0.137605 28 55 SH1495 1495 Leu3 5' flank 29.928263 93.882127 61.905195 1.791727096 -0.140666 28 56 SH10852 10852 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1146 1164 126.471943 205.588685 166.030314 2.220187389 -0.133588 28 57 SH18820 18820 YNL302C_14_62942_61957_INTRON_21_571 intron 27.490828 99.451914 27.490828 72.961086 50.225957 1.70092822 0.019343 28 58 SH5842 5842 snR35 snR35 396 413 27.029698 76.914405 51.9720515 1.71576986 -0.063936 28 59 SH3284 3284 Thr2 tRNA 21 33 38.108099 110.978236 74.5431675 1.872407843 -0.255418 28 60 SH7373 7373 snR68 snR68 86 107 26.620892 70.226717 48.4238045 1.685058908 -0.00593 28 61 SH5459 5459 snR32 5' 26.673276 76.903601 51.7884385 1.714232817 -0.089297 28 62 SH19391 19391 YPR043W_16_654161_654842_INTRON_3_405 intron 26.598845 98.73652 26.598845 73.137675 49.86826 1.697824215 -0.046499 28 63 SH17134 17134 YHR010W_8_126513_127484_INTRON_32_592 intron 26.692326 92.985906 26.692326 67.29358 46.992953 1.672032737 0.04017 28 64 SH4455 4455 telomerase RNA 3' 36.14349 100.400149 68.2718195 1.834241477 -0.092624 28 65 SH4499 4499 U3b (snR17b) U3b 51 68 31.453805 98.442873 64.948339 1.812568049 -0.170478 28 66 SH21079 21079 YMR230W spliced 35.98843 90.220775 63.1046025 1.800061035 0.121743 28 67 SH10063 10063 RUF6 RUF6 161 180 28.750152 96.278188 62.51417 1.795978469 -0.233403 28 68 SH1946 1946 Lys2 5' flank 25.843154 73.783369 49.8132615 1.697344978 -0.110439 28 69 SH2181 2181 Met2 tRNA 36 50 38.591538 93.249089 65.9203135 1.819019264 0.113703 28 70 SH20179 20179 YDL189W spliced 28.093499 78.878795 53.486147 1.728241314 -0.016453 28 71 SH20938 20938 YLR406C spliced 29.153572 85.64739 57.400481 1.758915532 -0.033753 28 72 SH4976 4976 snR10 5' 27.652051 89.637268 58.6446595 1.768228469 -0.174963 28 73 SH9529 9529 RUF3 RUF3 31 47 32.946752 98.050019 65.4983855 1.816230595 -0.122722 28 74 SH12691 12691 MT ORF 8 (hypothetical) 5' 28.327288 101.914587 28.327288 74.587299 51.4572935 1.71144694 0.055172 28 75 SH5149 5149 snR13 5' 27.977898 71.532435 49.7551665 1.696838184 0.072141 28 76 SH2400 2400 Phe4 tRNA-intron/exon 51 66 745.733612 1343.698952 1044.716282 3.018998363 -0.918808 28 77 SH6569 6569 snR47 5' 30.427112 88.509847 59.4684795 1.774286835 -0.027384 28 78 SH1826 1826 Leu8 3' flank 25.326515 69.846536 47.5865255 1.677483996 -0.096712 28 79 SH5333 5333 snR30 snR30 516 532 29.956509 80.809789 55.383149 1.743377645 0.080312 28 80 SH1882 1882 Leu9 3' flank 80.257058 129.912199 105.0846285 2.021539193 0.148728 28 81 SH1088 1088 Gly4 5' flank 31.976855 98.752504 65.3646795 1.815343136 -0.162758 28 82 SH17313 17313 YHR203C_8_505526_504472_INTRON_15_283 intron 27.892375 102.126425 27.892375 75.23405 51.5632125 1.712339967 0.017376 28 83 SH11140 11140 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2586 2599 68.070546 118.268417 93.1694815 1.969273679 0.15215 28 84 SH6422 6422 snR45 5' 26.020731 74.299656 50.1601935 1.700359203 -0.103942 28 85 SH19622 19622 RNA14 1.1 30.39493 94.345124 62.370027 1.794975932 -0.127568 28 86 SH14906 14906 MT tRNA Ile 3' 27.372543 94.565721 27.372543 68.193178 47.7828605 1.679272145 0.075889 28 87 SH15621 15621 YBR181C_2_592732_591670_INTRON_7_358 intron 33.527366 127.849779 33.527366 95.322413 64.4248895 1.809053682 -0.0505 28 88 SH17381 17381 YIL052C_9_257061_256224_INTRON_38_509 intron/exon 42.179828 145.66728 42.179828 104.487452 73.33364 1.865303242 -0.04617 28 89 SH99 99 Ala2 3' flank 28.474771 85.849988 57.1623795 1.757110299 -0.075845 28 90 SH3677 3677 Val2 3' flank 30.789755 136.575488 83.6826215 1.922635277 -0.859148 28 91 SH65 65 Ala2 5' flank 32.488261 124.496482 78.4923715 1.894827451 -0.624045 28 92 SH15370 15370 YBL027W_2_168385_169338_INTRON_3_386 intron 36.033896 152.446629 36.033896 117.412733 76.7233145 1.884927356 -0.417704 28 93 SH18733 18733 YNL147W_14_350937_351380_INTRON_19_138 3' exon 26.790908 112.869672 26.790908 87.078764 56.934836 1.755378074 -0.204926 28 94 SH3180 3180 Ser5 tRNA 21 35 38.907386 101.404947 70.1561665 1.84606585 -0.052537 28 95 SH20865 20865 YLR093C spliced 25.172232 69.600101 47.3861665 1.675651576 -0.105088 28 96 SH10652 10652 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 146 163 35.013676 87.453574 61.233625 1.78698997 0.161531 28 97 SH9613 9613 RUF3 3' 23.292432 68.172183 45.7323075 1.660223115 -0.229476 28 98 SH3212 3212 Thr1 5' flank 21.84944 73.139703 47.4945715 1.676643974 -0.420491 28 99 SH1160 1160 His1 tRNA 21 37 55.603848 121.240202 88.422025 1.946560457 -0.093396 28 100 SH20933 20933 YLR388W spliced 35.803855 92.68998 64.2469175 1.807852296 0.062518 28 101 SH4084 4084 SRP RNA SRP RNA 311 323 26.618945 81.257933 53.938439 1.731898374 -0.14779 28 102 SH21146 21146 YNL246W spliced 28.451308 70.06353 49.257419 1.692471652 0.124364 28 103 SH19206 19206 YPL081W_16_404945_406039_INTRON_8_508 intron 37.59173 130.876448 37.59173 94.284718 65.938224 1.819137246 0.069325 28 104 SH14355 14355 MT ORF9 and ORF10 (hypothetical) 5' / ORF9 33.019365 123.413723 33.019365 91.394358 62.2068615 1.793838291 0.021903 29 2 SH9750 9750 RUF4 RUF4 526 541 29.365607 86.130305 57.747956 1.761536617 -0.032752 29 3 SH19722 19722 Negative Control 30.484326 79.593567 55.0389465 1.740670112 0.128405 29 4 SH5587 5587 snR33 3' 28.911891 77.913932 53.4129115 1.727646252 0.049974 29 5 SH8434 8434 snoRNA cluster 5 intergenic 25.75429 101.701617 25.75429 76.947327 51.3508085 1.710547286 -0.157363 29 6 SH11197 11197 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2871 2891 37.985905 97.540868 67.7633865 1.830995102 0.007876 29 7 SH8580 8580 snR19 / U1 RNA U1 396 410 128.35753 158.755237 143.5563835 2.157022509 0.322624 29 8 SH10868 10868 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1226 1239 29.539845 102.499414 66.0196295 1.819673083 -0.306137 29 9 SH6739 6739 snR49 3' 25.28368 68.731416 47.007548 1.672167598 -0.084449 29 10 SH7472 7472 snR71 5' 27.258508 80.998668 54.128588 1.733426698 -0.099855 29 11 SH3361 3361 Thr3 3' flank 29.487037 89.665462 59.5762495 1.77507316 -0.089455 29 12 SH6215 6215 snR40 3' 29.984043 101.85561 65.9198265 1.819016056 -0.280585 29 13 SH21051 21051 YMR143W spliced 30.493305 92.69088 61.5920925 1.789524959 -0.095878 29 14 SH20527 20527 YGR118W spliced 30.436116 96.164386 63.300251 1.801405432 -0.155302 29 15 SH2248 2248 Phe1 3' flank 25.401762 68.705266 47.053514 1.672592062 -0.07519 29 16 SH13182 13182 MT COX1 Exon4 31.148543 103.30171 31.148543 73.153167 52.150855 1.717261433 0.253498 29 17 SH1309 1309 Ile3 5' flank 28.637394 69.556945 49.0971695 1.691056455 0.143883 29 18 SH8527 8527 snR19 / U1 RNA U1 131 147 41.700897 116.599222 79.1500595 1.898451246 -0.278413 29 19 SH14158 14158 MT COB intronic 33.300286 121.250364 33.300286 88.950078 61.125182 1.786220165 0.084193 29 20 SH5036 5036 snR10 snR10 211 223 64.120554 116.884171 90.5023625 1.956659916 0.115078 29 21 SH12465 12465 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 22567.22204 37067.88338 22567.22204 14501.66134 18534.44169 4.267979508 -0.22033 29 22 SH14080 14080 MT COB Cytbi4 25.72406 97.289278 25.72406 72.565218 49.144639 1.691476149 -0.10336 29 23 SH6571 6571 snR47 5' 44.697288 104.00065 74.348969 1.871274951 0.012987 29 24 SH9034 9034 snR17a / U3a U3a 456 468 110.662744 148.418986 129.540865 2.112406793 0.265671 29 25 SH12070 12070 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7236 7254 28.502042 72.119535 50.3107885 1.701661124 0.100042 29 26 SH14058 14058 MT COB Cytbi4 27.135342 111.232427 27.135342 85.097085 56.1162135 1.749088359 -0.157808 29 27 SH9138 9138 snR7 U5 RNA 5' 29.392019 75.260786 52.3264025 1.718720878 0.115694 29 28 SH12977 12977 MT COX1 COX1ai2 33.527991 128.074763 33.527991 95.546772 64.5373815 1.809811341 -0.055258 29 29 SH11623 11623 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5001 5018 33.41806 77.640967 55.5295135 1.744523869 0.300792 29 30 SH7798 7798 snoRNA cluster1 snR75 31.557632 129.590539 31.557632 99.032907 65.2952695 1.814881719 -0.179796 29 31 SH3578 3578 Tyr2 3' flank 27.418599 82.065657 54.742128 1.738321676 -0.101925 29 32 SH8141 8141 snoRNA cluster 3; intergenic 470.693944 869.437368 470.693944 399.743424 435.218684 2.638707531 0.41136 29 33 SH11010 11010 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1936 1954 37.078628 81.763928 59.421278 1.773941988 0.347115 29 34 SH9345 9345 RUF1 RUF1 301 317 29.933264 68.327436 49.13035 1.691349858 0.246227 29 35 SH3267 3267 Thr2 5' flank 27.368627 89.785265 58.576946 1.767726725 -0.195372 29 36 SH3620 3620 Val1 3' flank 26.878032 75.018471 50.9482515 1.707129284 -0.050755 29 37 SH13636 13636 MT ATP6 ATP6 26.537942 110.401428 26.537942 84.863486 55.700714 1.745860762 -0.197001 29 38 SH13023 13023 MT COX1 COX1ai2 40.389127 131.461113 40.389127 92.071986 66.2305565 1.821058404 0.177364 29 39 SH8487 8487 snR19 / U1 RNA 5' 26.638173 77.427183 52.032678 1.716276179 -0.098344 29 40 SH8907 8907 LSR1 / U2 RNA 3' 30.656854 71.617706 51.13728 1.708737624 0.244757 29 41 SH7796 7796 snoRNA cluster1 snR75 47.723345 168.201578 47.723345 121.478233 84.600789 1.927374413 -0.24063 29 42 SH9548 9548 RUF3 RUF3 126 145 25.399977 77.535864 51.4679205 1.711536621 -0.191353 29 43 SH11136 11136 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2566 2583 43.993838 83.174968 63.584403 1.803350598 0.457314 29 44 SH5641 5641 snR34 snR34 126 141 31.383394 92.42419 61.903792 1.791717253 -0.052912 29 45 SH17776 17776 YKL180W_11_109271_110131_INTRON_310_615 intron 31.647894 122.027019 31.647894 91.379125 61.5135095 1.788970505 -0.024087 29 46 SH5896 5896 snR36 5' 26.510338 74.320393 50.4153655 1.70256292 -0.068311 29 47 SH5818 5818 snR35 snR35 276 291 39.331494 104.835244 72.083369 1.857835076 -0.112237 29 48 SH20586 20586 YHR021C spliced 27.790054 65.997163 46.8936085 1.671113653 0.136451 29 49 SH14545 14545 MT 21S rRNA 21S rRNA3 26.007152 101.200444 26.007152 76.193292 51.100222 1.708422787 -0.129098 29 50 SH20686 20686 YIL133C spliced 31.397777 76.34282 53.8702985 1.731349382 0.225784 29 51 SH4832 4832 snR8 5' 27.63345 70.959594 49.296522 1.69281628 0.056 29 52 SH13611 13611 MT ATP8/AAP1 3' 28.100411 99.807846 28.100411 72.707435 50.403923 1.702464339 0.064921 29 53 SH5044 5044 snR10 3' 28.134097 87.98868 58.0613885 1.763887417 -0.12316 29 54 SH2080 2080 Lys4 tRNA 66 80 84.333741 140.311435 112.322588 2.050467101 0.062073 29 55 SH56 56 Ala2 5' flank 27.741195 75.795778 51.7684865 1.714065468 -0.000312 29 56 SH20996 20996 YML085C spliced 32.462477 79.888376 56.1754265 1.749546378 0.217819 29 57 SH5097 5097 snR11 snR11 86 106 27.377019 74.340977 50.858998 1.7063678 -0.006625 29 58 SH13831 13831 MT COB Cytbi2 26.800985 95.210897 26.800985 69.409912 48.1054485 1.682194268 0.018281 29 59 SH6352 6352 snR43 snR43 1 15 37.894995 89.769176 63.8320855 1.805039034 0.176055 29 60 SH9014 9014 snR17a / U3a U3a 356 371 28.725783 78.14666 53.4362215 1.727835741 0.03482 29 61 SH15038 15038 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.326886 96.618596 26.326886 71.29171 48.809298 1.688502561 -0.04176 29 62 SH11190 11190 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2836 2852 48.916009 107.083466 77.9997375 1.892093141 0.032693 29 63 SH17504 17504 YJL136C_10_156971_156248_INTRON_25_484 exon/intron 26.307986 110.600928 26.307986 85.292942 55.800464 1.74663781 -0.218452 29 64 SH1153 1153 His1 5' flank - tRNA5 5 26.722878 71.427634 49.075256 1.690862574 -0.014837 29 65 SH4666 4666 snR3 3' 26.816491 72.472158 49.6443245 1.695869606 -0.022033 29 66 SH13191 13191 MT COX1 Exon4 28.970915 112.850428 28.970915 84.879513 56.925214 1.755304672 -0.031915 29 67 SH8915 8915 LSR1 / U2 RNA 3' 28.711351 90.940759 59.826055 1.776890366 -0.146982 29 68 SH9432 9432 RUF2 RUF2 1 17 32.617056 83.509122 58.063089 1.763900137 0.155607 29 69 SH4114 4114 SRP RNA SRP RNA 461 477 27.728085 80.016652 53.8723685 1.73136607 -0.055461 29 70 SH17574 17574 YJL191W_10_73786_74610_INTRON_11_418 5' exon 30.324688 126.599595 30.324688 97.274907 63.7997975 1.8048193 -0.177973 29 71 SH16883 16883 YGL189C_7_148970_148233_INTRON_1_368 intron 26.842582 99.679824 26.842582 73.837242 50.339912 1.701912452 -0.038067 29 72 SH16874 16874 YGL187C_7_150529_149708_INTRON_1_342 intron 30.111212 112.451945 30.111212 83.340733 56.7259725 1.75378195 0.051739 29 73 SH11287 11287 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3321 3339 81.030718 153.897659 117.4641885 2.069905483 -0.147225 29 74 SH6737 6737 snR49 3' 28.427877 68.484679 48.456278 1.685350052 0.144649 29 75 SH10117 10117 RUF6 RUF6 431 450 35.282916 105.90011 70.591513 1.84875249 -0.222456 29 76 SH12272 12272 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.212694 113.216398 27.212694 87.003704 57.108199 1.756698464 -0.17463 29 77 SH1975 1975 Lys2 3' flank 26.144973 71.693729 48.919351 1.689480687 -0.060509 29 78 SH2742 2742 Pro5 tRNA 91 103 50.028499 108.721861 79.37518 1.899684723 0.022527 29 79 SH11252 11252 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3146 3163 2549.815632 2940.460898 2745.138265 3.438564224 -0.536434 29 80 SH17279 17279 YHR141C_8_382752_381991_INTRON_5_445 intron 30.619328 104.988156 30.619328 75.368828 52.994078 1.724227341 0.191336 29 81 SH12743 12743 MT COX1 COX1ai1 29.543914 118.629058 29.543914 90.085144 59.814529 1.776806687 -0.094099 29 82 SH16320 16320 YDR471W_4_1401759_1402553_INTRON_32_415 intron 30.483513 105.543113 30.483513 76.0596 53.2715565 1.726495386 0.173826 29 83 SH7053 7053 snR62 snR62 56 75 31.02946 88.471443 59.7504515 1.776341191 -0.000475 29 84 SH2812 2812 Pro6 3' flank 28.567702 75.654176 52.110939 1.716928899 0.056876 29 85 SH9953 9953 RUF5-1 RUF5-1 571 587 35.364587 89.095906 62.2302465 1.794001521 0.132274 29 86 SH2651 2651 Pro4 5' flank 29.794745 91.363606 60.5791755 1.782323358 -0.104584 29 87 SH21687 21687 copy of SH10242 28.977755 73.064081 51.020918 1.707748268 0.118607 29 88 SH11773 11773 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5751 5769 994.625082 824.340445 909.4827635 2.958794473 0.227634 29 89 SH11650 11650 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5136 5153 35.330128 94.207495 64.7688115 1.811365928 0.018157 29 90 SH7806 7806 snoRNA cluster1 snR75/intergenic 26.595482 91.216984 26.595482 65.621502 46.108492 1.663780919 0.057315 29 91 SH9682 9682 RUF4 RUF4 186 204 26.542045 74.363836 50.4529405 1.702886483 -0.06657 29 92 SH17473 17473 YJL001W_10_434855_435618_INTRON_66_181 exon/intron 28.204874 91.885704 28.204874 64.68083 46.442852 1.666918881 0.184318 29 93 SH11167 11167 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2721 2739 28.570261 64.990609 46.780435 1.670064256 0.204521 29 94 SH15397 15397 YBL050W_2_125087_126081_INTRON_31_146 exon/intron 28.804192 95.762139 28.804192 67.957947 48.3810695 1.684675465 0.177384 29 95 SH17672 17672 YKL006C-A_11_430270_429836_INTRON_37_177 intron/exon 27.606435 133.186523 27.606435 106.580088 67.0932615 1.826678904 -0.444993 29 96 SH17483 17483 YJL024C_10_396288_395627_INTRON_23_99 5' exon 31.853711 122.112242 31.853711 91.258531 61.556121 1.789271245 -0.013368 29 97 SH13749 13749 MT COB Exon1 26.764215 105.800877 26.764215 80.036662 53.4004385 1.727544823 -0.122373 29 98 SH236 236 Arg3 36-48 36 48 36.200964 80.659935 58.4304495 1.766639227 0.348839 29 99 SH13374 13374 MT COX1 intronic 28.603045 104.043665 28.603045 76.44062 52.5218325 1.72033987 0.048852 29 100 SH12975 12975 MT COX1 COX1ai2 31.946026 113.023155 31.946026 82.077129 57.0115775 1.755963058 0.154542 29 101 SH9982 9982 RUF5-1 RUF5-1 716 736 37.6746 106.180754 71.927677 1.856896034 -0.173953 29 102 SH2363 2363 Phe3 3' flank 35.26663 89.868628 62.567629 1.796349698 0.112367 29 103 SH15222 15222 MT COX3 cox3 27.23749 107.295133 27.23749 81.057643 54.1475665 1.733578943 -0.102037 29 104 SH12918 12918 MT COX1 COX1ai2 53.858238 176.786179 53.858238 123.927941 88.8930895 1.948868 -0.166123 30 2 SH546 546 Cys1 tRNA 31 47 31.356422 88.559446 59.957934 1.77784666 0.012016 30 3 SH12188 12188 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7826 7844 28.977485 89.084687 59.031086 1.771080773 -0.102733 30 4 SH14741 14741 MT ORF11; tRNA Leu; tRNA Gln 5' 28.533505 105.730778 28.533505 78.197273 53.365389 1.72725968 0.021517 30 5 SH13437 13437 MT COX1 intronic 27.520711 103.32193 27.520711 76.801219 52.160965 1.717345617 -0.028541 30 6 SH7390 7390 snR68 3' 48.284166 127.769474 88.02682 1.944615013 -0.328907 30 7 SH10885 10885 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1311 1324 26202.36375 12629.46168 19415.91272 4.288157811 0.19304 30 8 SH7204 7204 snR64 snR64 86 98 28.989758 71.087514 50.038636 1.699305463 0.146548 30 9 SH11202 11202 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2896 2913 37.557653 101.380985 69.469319 1.841793042 -0.081099 30 10 SH19204 19204 YPL081W_16_404945_406039_INTRON_8_508 intron 48.099746 144.631474 48.099746 97.531728 72.815737 1.86222525 0.206123 30 11 SH14619 14619 MT 21S rRNA Sce1 endonuc 28.898946 100.987647 28.898946 73.088701 50.9938235 1.707517576 0.113139 30 12 SH16067 16067 YDR005C_4_458099_456832_INTRON_7_86 intron 31.634535 118.732854 31.634535 88.098319 59.866427 1.777183339 0.031911 30 13 SH854 854 Glu2 tRNA 36 48 516.390262 491.489722 503.939992 2.702378825 0.197739 30 14 SH14445 14445 MT 21S rRNA 21S rRNA3 29.878646 97.824573 29.878646 68.945927 49.4122865 1.693834951 0.234063 30 15 SH12229 12229 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.610972 120.35683 33.610972 87.745858 60.678415 1.783034228 0.119225 30 16 SH9441 9441 RUF2 RUF2 46 63 99.590366 143.403927 121.4971465 2.084566078 0.206133 30 17 SH17138 17138 YHR010W_8_126513_127484_INTRON_32_592 intron 30.412696 133.53162 30.412696 104.118924 67.26581 1.827794376 -0.313081 30 18 SH19761 19761 Negative Control 58.027482 135.505045 96.7662635 1.985723972 -0.263821 30 19 SH18153 18153 YLR426W_12_987057_988108_INTRON_81_151 5' exon 30.560206 113.320342 30.560206 83.760136 57.160171 1.757093519 0.063784 30 20 SH8586 8586 snR19 / U1 RNA U1 426 441 56.457206 112.036834 84.24702 1.925554548 0.073936 30 21 SH6810 6810 snR52 5' 31.556575 86.367233 58.961904 1.770571499 0.059308 30 22 SH6833 6833 snR52 snR52 71 87 37.772254 82.012125 59.8921895 1.77737019 0.356802 30 23 SH4320 4320 telomerase RNA telomerase 636 652 32.297324 70.738554 51.517939 1.711958481 0.355343 30 24 SH17150 17150 YHR012W_8_129473_130440_INTRON_49_167 intron 31.684666 109.747722 31.684666 79.063056 55.373861 1.743304806 0.201425 30 25 SH8046 8046 snoRNA cluster 2 intergenic 25.399223 105.954471 25.399223 81.555248 53.4772355 1.728168948 -0.239907 30 26 SH6774 6774 snR50 snR50 46 66 34.171137 103.860467 69.015802 1.838948539 -0.208685 30 27 SH8633 8633 snR19 / U1 RNA 661-668 + 3' 661 27.087288 67.920116 47.503702 1.676727456 0.059565 30 28 SH15394 15394 YBL040C_2_142830_142074_INTRON_23_119 3' exon 26.599611 108.466414 26.599611 82.866803 54.733207 1.738250896 -0.168789 30 29 SH2815 2815 Pro6 3' flank 26.355681 71.817934 49.0868075 1.690964787 -0.046712 30 30 SH8977 8977 snR17a / U3a U3a 171 188 27.702677 81.082339 54.392508 1.735539084 -0.070434 30 31 SH14383 14383 MT ORF9 and ORF10 (hypothetical) 3' 29.237833 100.070356 29.237833 71.832523 50.535178 1.7035938 0.152462 30 32 SH4236 4236 telomerase RNA telomerase 216 234 27.131681 74.619447 50.875564 1.706509237 -0.027549 30 33 SH10347 10347 RUF7 RUF7 346 362 27.326241 78.008227 52.667234 1.72154051 -0.057515 30 34 SH17767 17767 YKL180W_11_109271_110131_INTRON_310_615 5' exon 27.644855 108.198663 27.644855 81.553808 54.5993315 1.737187325 -0.080176 30 35 SH15718 15718 YBR255C-A_2_727032_726576_INTRON_64_157 5' exon 30.151184 107.981898 30.151184 78.830714 54.490949 1.736324372 0.117343 30 36 SH17478 17478 YJL001W_10_434855_435618_INTRON_66_181 intron 29.989045 118.082699 29.989045 89.093654 59.5413495 1.774818674 -0.056963 30 37 SH14277 14277 MT VAR1 includes 5’ processing site VAR1 29.809001 106.567254 29.809001 77.758253 53.783627 1.730650086 0.109552 30 38 SH1382 1382 Leu1 5' flank - tRNA2 2 27.494443 87.510041 57.502242 1.759684778 -0.161032 30 39 SH12948 12948 MT COX1 COX1ai2 27.585872 98.085096 27.585872 71.499224 49.542548 1.694978339 0.045411 30 40 SH18728 18728 YNL147W_14_350937_351380_INTRON_19_138 intron 27.340201 101.840813 27.340201 75.500612 51.4204065 1.711135506 -0.024069 30 41 SH6851 6851 snR52 3' 24.509425 69.854118 47.1817715 1.673774243 -0.159048 30 42 SH16429 16429 YER074W_5_306319_307192_INTRON_4_469 intron 35.278953 144.444847 35.278953 110.165894 72.7224235 1.861668343 -0.304004 30 43 SH1532 1532 Leu3 3' flank 28.530116 81.243631 54.8868735 1.739468493 -0.016971 30 44 SH8218 8218 snoRNA cluster 3; snR51 26.577229 114.616094 26.577229 89.038865 57.808047 1.761988297 -0.242301 30 45 SH19059 19059 YOR234C_15_779404_778554_INTRON_20_546 intron/exon 26.537935 94.83353 26.537935 69.295595 47.916765 1.68048749 0.000867 30 46 SH3839 3839 RNaseP RNaseP 161 178 44.173995 121.975431 83.074713 1.91946885 -0.317792 30 47 SH11327 11327 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3521 3536 109.13208 174.341408 141.736744 2.151482452 -0.02796 30 48 SH11343 11343 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3601 3614 21327.52069 14392.34349 17859.93209 4.251879803 -0.282147 30 49 SH4099 4099 SRP RNA SRP RNA 386 400 50.114666 113.212061 81.6633635 1.912027263 -0.056563 30 50 SH20882 20882 YLR211C spliced 26.388683 83.694665 55.041674 1.740691634 -0.193742 30 51 SH5374 5374 snR31 5' 29.64557 90.793016 60.219293 1.779735652 -0.10161 30 52 SH2152 2152 Met1 3' flank 30.136224 85.085143 57.6106835 1.760503028 0.020805 30 53 SH16489 16489 YER102W_5_362729_363698_INTRON_1_360 3' exon 27.71265 107.670501 27.71265 80.957851 54.3352505 1.735081674 -0.068218 30 54 SH9865 9865 RUF5-1 RUF5-1 131 152 27.424534 69.955796 48.690165 1.687441246 0.055056 30 55 SH19754 19754 Negative Control 29.636442 93.36866 61.502551 1.78889313 -0.145296 30 56 SH12138 12138 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7576 7594 27.27032 86.906759 57.0885395 1.756548933 -0.169527 30 57 SH16347 16347 YDR500C_4_1450856_1450201_INTRON_8_396 intron 29.325173 122.982064 29.325173 94.656891 61.991032 1.792328866 -0.180626 30 58 SH2154 2154 Met2 5' flank 35.816282 96.503835 66.1600585 1.820595881 -0.019066 30 59 SH19939 19939 YBL027W spliced 59.78688 132.15025 95.968565 1.982129001 -0.18672 30 60 SH18650 18650 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.849667 105.647217 28.849667 77.79755 53.3236085 1.726919531 0.047411 30 61 SH9355 9355 RUF1 RUF1 351 373 26.29459 78.643077 52.4688335 1.719901409 -0.138297 30 62 SH12423 12423 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 41.618757 138.345105 41.618757 97.726348 69.6725525 1.843061721 0.079105 30 63 SH11284 11284 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3306 3322 30.449356 79.829322 55.139339 1.741461556 0.123281 30 64 SH19390 19390 YPR043W_16_654161_654842_INTRON_3_405 intron 28.575514 110.53681 28.575514 82.961296 55.768405 1.746388224 -0.034922 30 65 SH14394 14394 MT 21S rRNA 21S rRNA3 26.431684 97.424088 26.431684 71.992404 49.212044 1.692071404 -0.043495 30 66 SH16158 16158 YDR129C_4_715372_713333_INTRON_22_132 intron 33.226822 123.560607 33.226822 91.333785 62.2803035 1.79435072 0.028603 30 67 SH7360 7360 snR68 snR68 21 38 28.727031 76.170138 52.4485845 1.719733772 0.060551 30 68 SH10880 10880 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1286 1301 186.232449 177.194939 181.713694 2.259387657 0.580587 30 69 SH17861 17861 YLL050C_12_40413_39803_INTRON_15_193 5' exon 32.738834 124.119891 32.738834 92.381057 62.5599455 1.796296362 -0.007195 30 70 SH20259 20259 YDR397C spliced 42.193156 89.056371 65.6247635 1.817067751 0.282005 30 71 SH15872 15872 YDL079C_4_314747_312950_INTRON_413_704 3' exon 33.953277 128.597683 33.953277 95.644406 64.7988415 1.811567241 -0.046558 30 72 SH14295 14295 MT VAR1 includes 5’ processing site VAR1 27.87045 97.727875 27.87045 70.857425 49.3639375 1.693409794 0.073829 30 73 SH12926 12926 MT COX1 COX1ai2 30.825361 126.366165 30.825361 96.540804 63.6830825 1.804024077 -0.148108 30 74 SH7669 7669 snoRNA cluster1 snR78 28.419762 103.817642 28.419762 76.39788 52.408821 1.71940439 0.037299 30 75 SH9568 9568 RUF3 RUF3 226 243 27.964128 75.532126 51.748127 1.713894635 0.018258 30 76 SH13293 13293 MT COX1 COX1-ai5a 29.538671 125.100515 29.538671 96.561844 63.0502575 1.799686865 -0.201741 30 77 SH19646 19646 SIR1 2.2 30.843211 82.919115 56.881163 1.754968467 0.091733 30 78 SH21602 21602 copy of SH6673 25.608172 88.962384 57.285278 1.758043025 -0.311425 30 79 SH1265 1265 Ile2 tRNA 21 37 34.332582 83.448161 58.8903715 1.770044294 0.225343 30 80 SH4917 4917 snR9 5' - 7 7 30.768222 96.157395 63.4628085 1.802519288 -0.141613 30 81 SH15751 15751 YCR031C_3_178212_177492_INTRON_8_314 intron 29.686819 101.764062 29.686819 73.077243 51.382031 1.710811267 0.163976 30 82 SH19302 19302 YPL198W_16_173151_174701_INTRON_12_420 intron 28.199868 101.082296 28.199868 73.882428 51.041148 1.707920434 0.056185 30 83 SH3380 3380 Thr4 5' flank - tRNA5 5 28.581052 71.587444 50.084248 1.699701157 0.112479 30 84 SH3646 3646 Val2 5' flank 28.507621 75.668905 52.088263 1.716739875 0.052715 30 85 SH705 705 Gln3 tRNA 56 68 80.529414 128.954479 104.7419465 2.02012064 0.165782 30 86 SH14031 14031 MT COB exon4/cytbi4 27.546969 112.10197 27.546969 85.555001 56.550985 1.752440174 -0.134814 30 87 SH6020 6020 snR37 snR37 16 38 26.917504 74.776692 50.847098 1.706266171 -0.044831 30 88 SH1409 1409 Leu1 3' flank 31.029339 80.321858 55.6755985 1.745664894 0.149016 30 89 SH357 357 Arg5 3' flank 2987.148624 3677.18245 3332.165537 3.522726568 -0.684203 30 90 SH9854 9854 RUF5-1 RUF5-1 76 93 29.316248 85.125956 57.221102 1.757556217 -0.016858 30 91 SH13497 13497 MT COX1 intronic 27.186987 100.449069 27.186987 74.262082 50.7245345 1.70521807 -0.01902 30 92 SH8439 8439 snoRNA cluster 5 snR128 8333.168906 13545.90125 8333.168906 5213.73234 6773.450623 3.830809969 0.098379 30 93 SH14877 14877 MT tRNA Ala 5' 30.702957 92.054713 30.702957 62.351756 46.5273565 1.667708378 0.382941 30 94 SH20482 20482 YGL226C-A spliced 29.706477 100.597178 65.1518275 1.813926602 -0.263289 30 95 SH20487 20487 YGL232W spliced 32.564258 98.042938 65.303598 1.81493711 -0.132556 30 96 SH5017 5017 snR10 snR10 116 128 82.549149 166.762025 124.655587 2.095711748 -0.269837 30 97 SH15086 15086 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.641174 107.740137 26.641174 82.098963 54.3700685 1.73535988 -0.156527 30 98 SH7347 7347 snR68 5' 24.633192 72.413793 48.5234925 1.685952052 -0.184804 30 99 SH4013 4013 SRP RNA 5' 25.251961 72.585186 48.9185735 1.689473784 -0.139295 30 100 SH21205 21205 YOL127W spliced 58.77613 119.00366 88.889895 1.948852393 -0.004691 30 101 SH8649 8649 snR19 / U1 RNA 3' 29.81558 83.493718 56.654649 1.753235553 0.035697 30 102 SH3856 3856 RNaseP RNaseP 246 258 38.285027 90.839668 64.5623475 1.809979313 0.160735 30 103 SH16565 16565 YER133W_5_432491_433954_INTRON_178_702 intron 25.040269 100.228961 25.040269 76.188692 50.6144805 1.704274784 -0.202002 30 104 SH3066 3066 Ser3 tRNA 26 40 44.219917 102.194542 73.2072295 1.864553971 0.039318 31 2 SH2770 2770 Pro6 5' flank 28.389484 86.198273 57.2938785 1.758108223 -0.085551 31 3 SH5460 5460 snR32 5' 26.334944 73.736511 50.0357275 1.699280219 -0.073526 31 4 SH16852 16852 YGL183C_7_157071_156547_INTRON_4_86 intron 37.315655 131.68163 37.315655 95.365975 66.340815 1.821780803 0.039741 31 5 SH14901 14901 MT tRNA Ile tRNA / 3' 25.418295 94.854248 25.418295 70.435953 47.927124 1.680581369 -0.097809 31 6 SH16135 16135 YDR064W_4_579453_580447_INTRON_22_560 3' exon 31.128317 117.816538 31.128317 87.688221 59.408269 1.773846898 0.017538 31 7 SH12131 12131 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7541 7554 33.243619 85.570222 59.4069205 1.77383704 0.143356 31 8 SH9539 9539 RUF3 RUF3 81 97 27.166146 65.716405 46.4412755 1.666904139 0.096813 31 9 SH12265 12265 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.353815 112.370247 31.353815 82.016432 56.6851235 1.753469097 0.130642 31 10 SH16336 16336 YDR500C_4_1450856_1450201_INTRON_8_396 5' exon 24.584349 83.956831 24.584349 60.372482 42.4784155 1.628168309 -0.005101 31 11 SH2532 2532 Pro1 3' flank 26.483668 69.155702 47.819685 1.679606711 -0.001136 31 12 SH5060 5060 snR11 5' 26.694472 64.680985 45.6877285 1.659799566 0.078766 31 13 SH305 305 Arg4 3' flank 26.978359 75.019831 50.999095 1.707562469 -0.043597 31 14 SH14448 14448 MT 21S rRNA 21S rRNA3 24.793021 87.09905 24.793021 63.306029 44.049525 1.64394123 -0.037519 31 15 SH17225 17225 YHR041C_8_189855_189122_INTRON_15_115 3' exon 30.679503 114.377324 30.679503 84.697821 57.688662 1.761090466 0.051777 31 16 SH16208 16208 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 30.21141 122.948644 30.21141 93.737234 61.974322 1.792211784 -0.125673 31 17 SH16216 16216 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 26.164075 101.364049 26.164075 76.199974 51.1820245 1.70911746 -0.117597 31 18 SH16411 16411 YER056C-A_5_270183_269421_INTRON_38_434 intron 28.901012 108.961913 28.901012 81.060901 54.9809565 1.740212291 0.009621 31 19 SH2469 2469 Phe5 3' flank 29.221169 81.976413 55.598791 1.745065348 0.019134 31 20 SH5479 5479 snR32 snR32 56 72 67.303418 147.203094 107.253256 2.030410485 -0.265952 31 21 SH4286 4286 telomerase RNA telomerase 466 480 47.687635 118.828022 83.2578285 1.92042508 -0.197354 31 22 SH639 639 Gln2 5' flank 28.458744 89.546247 59.0024955 1.77087038 -0.134904 31 23 SH2243 2243 Phe1 91-92 + 3' flank 91 110 26.229829 75.399907 50.814868 1.705990802 -0.102634 31 24 SH15646 15646 YBR189W_2_604466_605466_INTRON_8_420 intron 35.122563 133.126094 35.122563 99.003531 67.063047 1.826483282 -0.087713 31 25 SH15447 15447 YBL087C_2_60732_59815_INTRON_43_546 intron 29.280154 117.915666 29.280154 89.635512 59.457833 1.774209077 -0.098361 31 26 SH8796 8796 LSR1 / U2 RNA U2 621 639 29.676754 69.648655 49.6627045 1.696030366 0.211275 31 27 SH5871 5871 snR35 3' 31.608241 95.709967 63.659104 1.803860522 -0.10912 31 28 SH4373 4373 telomerase RNA telomerase 901 913 35.230026 89.26665 62.248338 1.79412776 0.125127 31 29 SH9728 9728 RUF4 RUF4 416 431 27.90138 72.786723 50.3440515 1.701948163 0.050187 31 30 SH2259 2259 Phe1 3' flank 39.073644 98.176333 68.6249885 1.836482285 0.017711 31 31 SH5822 5822 snR35 snR35 296 315 26.008338 75.052699 50.5305185 1.703553755 -0.114537 31 32 SH16155 16155 YDR129C_4_715372_713333_INTRON_22_132 5' exon 30.657656 133.057794 30.657656 103.400138 67.028897 1.826262073 -0.292157 31 33 SH641 641 Gln2 5' flank - tRNA10 5' flank 10 28.826793 82.908339 55.867566 1.747159751 -0.017786 31 34 SH13154 13154 MT COX1 intronic 27.140045 101.743485 27.140045 75.60344 51.3717425 1.710724297 -0.039526 31 35 SH9753 9753 RUF4 RUF4 541 553 184.806479 219.390134 202.0983065 2.305562674 0.213867 31 36 SH6482 6482 snR46 5' 30.071099 68.102948 49.0870235 1.690966698 0.258232 31 37 SH18793 18793 YNL301C_14_64561_63569_INTRON_113_544 intron 27.803666 96.159696 27.803666 69.35603 48.579848 1.686456152 0.089759 31 38 SH4287 4287 telomerase RNA telomerase 471 483 54.145648 113.266539 83.7060935 1.922757074 0.013128 31 39 SH12751 12751 MT COX1 COX1ai1 30.514976 110.150533 30.514976 80.635557 55.5752665 1.744881554 0.117276 31 40 SH18900 18900 YOL120C_15_94401_93394_INTRON_113_559 intron 25.778039 98.79118 25.778039 74.013141 49.89559 1.698062162 -0.118281 31 41 SH964 964 Gly1 71-72 + 3' flank 71 27.856604 67.073515 47.4650595 1.67637403 0.125534 31 42 SH1043 1043 Gly3 5' flank 27.236045 76.934916 52.0854805 1.716716675 -0.049873 31 43 SH17481 17481 YJL001W_10_434855_435618_INTRON_66_181 3' exon 28.83083 109.059903 28.83083 81.229073 55.0299515 1.74059913 0.002965 31 44 SH6997 6997 snR60 snR60 66 85 26.263078 73.885538 50.074308 1.699614956 -0.080726 31 45 SH2760 2760 Pro5 3' flank 26.177427 80.170185 53.173806 1.725697747 -0.165811 31 46 SH2447 2447 Phe5 tRNA 6 20 28.205321 83.267664 55.7364925 1.746139635 -0.063181 31 47 SH3637 3637 Val2 5' flank 25.575285 67.376733 46.476009 1.667228827 -0.042785 31 48 SH14266 14266 MT VAR1 includes 5’ processing site VAR1 29.409345 105.924167 29.409345 77.514822 53.4620835 1.72804588 0.087259 31 49 SH3665 3665 Val2 66-74 + 3' flank 66 27.359875 72.019674 49.6897745 1.696267026 0.022609 31 50 SH15968 15968 YDL130W_4_229906_230527_INTRON_115_415 intron/exon 26.080452 104.765714 26.080452 79.685262 52.882857 1.72331491 -0.16673 31 51 SH9134 9134 snR7 U5 RNA 5' 31.560278 70.441327 51.0008025 1.70757701 0.316062 31 52 SH1013 1013 Gly2 tRNA 56 68 31.874122 92.023269 61.9486955 1.792032166 -0.02542 31 53 SH15789 15789 YDL029W_4_399336_400634_INTRON_23_145 intron 26.939227 106.217104 26.939227 80.277877 53.608552 1.729234077 -0.113106 31 54 SH19891 19891 Positive Control 7 43.928762 107.925645 75.9272035 1.880397405 -0.077017 31 55 SH21106 21106 YNL069C spliced 28.635609 69.878539 49.257074 1.69246861 0.139336 31 56 SH13243 13243 MT COX1 COX1-ai4 26.489386 93.796832 26.489386 68.307446 47.398416 1.675763828 0.011123 31 57 SH17189 17189 YHR021C_8_148660_147862_INTRON_4_553 intron 28.893259 103.829891 28.893259 75.936632 52.4149455 1.719455139 0.074496 31 58 SH12342 12342 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.965695 129.54496 35.965695 94.579265 65.27248 1.814730114 0.025399 31 59 SH4544 4544 U3b (snR17b) U3b 276 290 29.162412 85.30577 57.234091 1.75765479 -0.027164 31 60 SH10678 10678 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 276 289 69.121387 157.564868 113.3431275 2.054395192 -0.361386 31 61 SH5517 5517 snR32 3' 26.47673 83.861042 55.168886 1.741694215 -0.189454 31 62 SH18160 18160 YLR426W_12_987057_988108_INTRON_81_151 3' exon 28.112893 118.615656 28.112893 91.502763 59.807828 1.776758031 -0.184705 31 63 SH20490 20490 YGL232W spliced 25.715433 75.151533 50.433483 1.702718962 -0.137611 31 64 SH4263 4263 telomerase RNA telomerase 351 368 27.929754 74.760537 51.3451455 1.710499389 0.026221 31 65 SH16574 16574 YER179W_5_548416_549512_INTRON_133_224 5' exon 41.388103 130.523929 41.388103 90.135826 65.7619645 1.817974778 0.241304 31 66 SH2599 2599 Pro3 5' flank 28.286021 73.288856 50.7874385 1.705756309 0.069957 31 67 SH21054 21054 YMR143W spliced 26.481694 85.456803 55.9692485 1.747949476 -0.207974 31 68 SH12341 12341 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.310911 115.342858 31.310911 85.031947 58.171429 1.764709733 0.072952 31 69 SH21601 21601 copy of SH6672 26.863339 79.016878 52.9401085 1.723784827 -0.102569 31 70 SH17971 17971 YLR185W_12_522665_523290_INTRON_8_366 intron/exon 28.270711 103.204575 28.270711 75.933864 52.1022875 1.716856791 0.033491 31 71 SH8322 8322 snoRNA cluster4 intergenic 27.584113 108.46742 27.584113 81.883307 54.73371 1.738254887 -0.088358 31 72 SH21287 21287 YPL143W spliced 30.434049 90.443763 60.438906 1.781316595 -0.060515 31 73 SH14851 14851 MT tRNA Ser2; tRNA Arg2 5' 28.282099 100.638153 28.282099 73.356054 50.8190765 1.706026769 0.06881 31 74 SH3941 3941 RNase MRP RNaseMRP 121 145 28.116971 81.18052 54.6487455 1.737580197 -0.043677 31 75 SH9246 9246 snR6 / U6 RNA 101-112 + 3' 101 29.98099 75.607818 52.794404 1.722587891 0.148471 31 76 SH397 397 Asn1 66-74 + 3' flank 66 3' flank 31.668656 69.360976 50.514816 1.703418775 0.337996 31 77 SH16710 16710 YGL031C_7_438393_437938_INTRON_1_456 intron 28.764609 109.023505 28.764609 81.258896 55.0117525 1.74045548 -0.001736 31 78 SH7932 7932 snoRNA cluster1 snR72 30.542799 119.2806 30.542799 89.737801 60.1403 1.77916559 -0.043619 31 79 SH8827 8827 LSR1 / U2 RNA U2 776 793 32.821778 72.905463 52.8636205 1.723156904 0.355483 31 80 SH7348 7348 snR68 5' 31.290896 71.038487 51.1646915 1.70897036 0.291459 31 81 SH11723 11723 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5501 5517 27.588062 87.436433 57.5122475 1.75976034 -0.153784 31 82 SH799 799 Glu1 tRNA 11 27 1839.689012 1317.558093 1578.623553 3.198278578 0.302447 31 83 SH12420 12420 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.769425 114.295583 30.769425 84.526158 57.6477915 1.760782674 0.058832 31 84 SH18092 18092 YLR367W_12_855877_857316_INTRON_698_1180 intron 28.209841 103.097674 28.209841 75.887833 52.048837 1.71641103 0.030037 31 85 SH10635 10635 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 61 79 29.0705 88.472175 58.7713375 1.769165574 -0.08777 31 86 SH6432 6432 snR45 snR45 6 25 29.714738 74.879065 52.2969015 1.718475958 0.14136 31 87 SH20109 20109 YDL064W spliced 36.190859 104.732322 70.4615905 1.847952442 -0.17868 31 88 SH9698 9698 RUF4 RUF4 266 285 29.005052 80.992329 54.9986905 1.740352349 0.017239 31 89 SH5712 5712 snR34 snR34 481 496 31.399357 85.991156 58.6952565 1.768603005 0.059374 31 90 SH10814 10814 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 956 976 317.920539 322.938882 320.4297105 2.505732777 0.255582 31 91 SH16928 16928 YGR001C_7_498029_497128_INTRON_36_97 intron 27.179234 103.957345 27.179234 77.778111 52.4786725 1.719982841 -0.064721 31 92 SH6334 6334 snR43 5' 91.012829 127.572499 109.292664 2.038591012 0.316396 31 93 SH1125 1125 Gly4 3' flank 29.307116 78.96595 54.136533 1.733490439 0.062128 31 94 SH11534 11534 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4556 4573 273.271687 236.061303 254.666495 2.405971811 0.575 31 95 SH13735 13735 MT COB Exon1 27.322582 96.452611 27.322582 70.130029 48.7263055 1.687763484 0.045496 31 96 SH18565 18565 YNL012W_14_609682_611661_INTRON_106_189 5' exon 32.729774 107.274799 32.729774 75.545025 54.1373995 1.733497391 0.314586 31 97 SH6504 6504 snR46 snR46 11 27 41.429823 94.541978 67.9859005 1.832418854 0.143691 31 98 SH9181 9181 snR7 U5 RNA U5 176 192 27.964815 69.67553 48.8201725 1.68859931 0.096479 31 99 SH1675 1675 Leu6 5' flank 27.835397 72.661469 50.248433 1.701122523 0.04728 31 100 SH21220 21220 YOR182C spliced 29.688634 82.185949 55.9372915 1.747701434 0.046481 31 101 SH7594 7594 snR189 snR189 41 57 35.212132 83.669634 59.440883 1.774085252 0.255099 31 102 SH1874 1874 Leu9 3' flank 32.116193 84.786182 58.4511875 1.766793339 0.111417 31 103 SH17578 17578 YJL191W_10_73786_74610_INTRON_11_418 intron 29.585149 107.802063 29.585149 79.216914 54.4010315 1.735607134 0.076741 31 104 SH11784 11784 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5806 5819 14362.79351 10510.669 12436.73125 4.09470625 -0.301319 32 2 SH756 756 Gln4 tRNA 51 63 41.903062 103.653531 72.7782965 1.862001886 -0.03556 32 3 SH502 502 Asp2 71-72 + 3' flank 71 88 25.92217 78.131778 52.026974 1.716228567 -0.159509 32 4 SH17003 17003 YGR118W_7_726968_727725_INTRON_66_385 3' exon 30.254995 108.354096 30.254995 79.099101 54.677048 1.737805059 0.120416 32 5 SH5631 5631 snR34 snR34 76 93 29.784235 73.388678 51.5864565 1.712535697 0.165891 32 6 SH7612 7612 snR189 snR189 131 150 27.181309 70.520785 48.851047 1.688873876 0.030181 32 7 SH7647 7647 snoRNA cluster1 5' 29.369681 99.301696 29.369681 70.932015 50.150848 1.700278281 0.173571 32 8 SH7280 7280 snR65 3' 25.507002 83.570397 54.5386995 1.736704778 -0.256283 32 9 SH19136 19136 YPL075W_16_412249_415357_INTRON_9_759 intron 27.730919 135.12151 27.730919 108.390591 68.060755 1.832896762 -0.473631 32 10 SH15566 15566 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.28973 151.532393 29.28973 123.242663 76.2661965 1.882332088 -0.688439 32 11 SH12443 12443 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 49.983704 175.927656 49.983704 126.943952 88.463828 1.946765728 -0.283529 32 12 SH1695 1695 Leu6 tRNA 41 55 33.384956 119.321789 76.3533725 1.882828224 -0.514078 32 13 SH21338 21338 YPR063C spliced 28.136719 113.775229 70.955974 1.850988966 -0.559668 32 14 SH21307 21307 YPL218W spliced 32.331633 118.318284 75.3249585 1.876938901 -0.523035 32 15 SH12679 12679 MT tRNA Trp tRNA 35.331343 186.039475 35.331343 151.708132 93.5197375 1.970903279 -0.951876 32 16 SH3189 3189 Ser5 tRNA 66 81 15910.73782 11749.84538 13830.2916 4.140831337 -0.343989 32 17 SH17128 17128 YHR010W_8_126513_127484_INTRON_32_592 intron 45.814519 151.948894 45.814519 107.134375 76.474447 1.883516345 -0.026066 32 18 SH8576 8576 snR19 / U1 RNA U1 376 393 27.465912 77.303523 52.3847175 1.719204606 -0.038823 32 19 SH7091 7091 snR63 5' 28.27703 75.166432 51.721731 1.713673051 0.044083 32 20 SH1450 1450 Leu2 tRNA 21 35 28.202262 91.182551 59.6924065 1.775919088 -0.175034 32 21 SH459 459 Asp1 3' flank 30.18557 78.452056 54.318813 1.734950271 0.124311 32 22 SH16765 16765 YGL087C_7_346902_346404_INTRON_12_96 3' exon 98.829694 246.814851 98.829694 148.985157 123.9074255 2.093097333 0.130524 32 23 SH10823 10823 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1001 1021 26.830125 67.71249 47.2713075 1.674597615 0.044132 32 24 SH16223 16223 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.678403 106.526771 29.678403 77.848368 53.7633855 1.730486609 0.100119 32 25 SH6404 6404 snR43 3' 32.432988 94.822192 63.62759 1.803645474 -0.06818 32 26 SH21909 21909 copy of SH19562 27.818313 75.469703 51.644008 1.71301994 0.009235 32 27 SH18719 18719 YNL130C_14_381156_379555_INTRON_30_470 intron 27.315071 101.43336 27.315071 75.118289 51.21668 1.709411423 -0.020969 32 28 SH3116 3116 Ser4 5' flank - tRNA3 3 30.771485 86.250121 58.510803 1.767236058 0.027688 32 29 SH8441 8441 snoRNA cluster 5 snR128 49.819744 157.710692 49.819744 108.890948 79.355346 1.89957619 0.015696 32 30 SH14110 14110 MT COB intronic 22.943207 86.009975 22.943207 64.066768 43.5049875 1.638539048 -0.194594 32 31 SH8121 8121 snoRNA cluster 3; snR41 25.13394 94.297215 25.13394 70.163275 47.6486075 1.678050213 -0.115753 32 32 SH8428 8428 snoRNA cluster 5 intergenic 47.507886 137.795327 47.507886 91.287441 69.3976635 1.841344849 0.329713 32 33 SH13435 13435 MT COX1 intronic 36.896237 132.906101 36.896237 97.009864 66.9530505 1.825770369 -0.004811 32 34 SH19778 19778 Negative Control 28.639959 98.764654 63.7023065 1.804155157 -0.277988 32 35 SH3346 3346 Thr3 3' flank 29.103627 72.982512 51.0430695 1.707936783 0.127892 32 36 SH10919 10919 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1481 1501 67.422085 113.952278 90.6871815 1.957545905 0.213005 32 37 SH16558 16558 YER133W_5_432491_433954_INTRON_178_702 intron 29.780908 118.864947 29.780908 90.084039 59.9324735 1.777662202 -0.083387 32 38 SH10062 10062 RUF6 RUF6 156 177 28.871295 85.771254 57.3212745 1.758315838 -0.049011 32 39 SH2186 2186 Met2 tRNA 61 73 31.442898 88.805222 60.12406 1.7790483 0.011415 32 40 SH10836 10836 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1066 1083 35.212529 94.394823 64.803676 1.811599642 0.011274 32 41 SH9567 9567 RUF3 RUF3 221 238 25.676779 72.284411 48.980595 1.690024056 -0.103182 32 42 SH10428 10428 RUF8 RUF8 66 85 27.526677 83.398196 55.4624365 1.743998944 -0.110639 32 43 SH3394 3394 Thr4 tRNA 56 70 34.516264 94.29722 64.406742 1.808931331 -0.003696 32 44 SH10306 10306 RUF7 RUF7 141 155 48.450584 105.804165 77.1273745 1.887208548 0.048099 32 45 SH8163 8163 snoRNA cluster 3; snR70 28.179877 104.739057 28.179877 77.55918 52.8695285 1.723205437 0.006223 32 46 SH1904 1904 Lys1 5' flank 37.461007 91.05725 64.2591285 1.807934831 0.137279 32 47 SH9824 9824 RUF5-1 5' 26.009607 79.134748 52.5721775 1.720755966 -0.165264 32 48 SH21082 21082 YMR292W spliced 31.999769 91.842845 61.921307 1.791840115 -0.017119 32 49 SH7228 7228 snR65 5' 47.600878 115.280642 81.44076 1.910841818 -0.138599 32 50 SH21286 21286 YPL143W spliced 26.088514 89.938363 58.0134385 1.763528607 -0.287334 32 51 SH11369 11369 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3731 3746 5364.416114 3865.638646 4615.02738 3.664174282 -0.001309 32 52 SH3781 3781 Val4 3' flank 29.084415 71.032932 50.0586735 1.699479337 0.153563 32 53 SH7326 7326 snR66 3' 28.5512 76.146158 52.348679 1.718905727 0.049298 32 54 SH5358 5358 snR30 3' 356.418184 399.614894 378.016539 2.577510802 0.057156 32 55 SH3648 3648 Val2 5' flank - tRNA1 1 25.422138 75.920736 50.671437 1.704763221 -0.169473 32 56 SH17551 17551 YJL189W_10_75932_76473_INTRON_7_392 5' exon 50.460083 164.823546 50.460083 115.363463 82.911773 1.918616202 -0.087932 32 57 SH12951 12951 MT COX1 COX1ai2 26.303882 105.967297 26.303882 80.663415 53.4836485 1.728221026 -0.162872 32 58 SH16578 16578 YER179W_5_548416_549512_INTRON_133_224 intron 26.972003 98.057344 26.972003 72.085341 49.528672 1.694856684 -0.005762 32 59 SH13742 13742 MT COB Exon1 27.229995 98.390456 27.229995 72.160461 49.695228 1.696314687 0.011572 32 60 SH11353 11353 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3651 3667 6512.150426 4819.944122 5666.047274 3.753280194 -0.098343 32 61 SH9929 9929 RUF5-1 RUF5-1 451 468 28.711392 86.806146 57.758769 1.761617929 -0.074998 32 62 SH15424 15424 YBL072C_2_89435_88518_INTRON_1_308 exon/intron 30.098191 110.721283 30.098191 81.623092 55.8606415 1.747105919 0.079177 32 63 SH6134 6134 snR39B snR39B 11 26 31.783506 83.315835 57.5496705 1.760042841 0.124543 32 64 SH19245 19245 YPL090C_16_378390_377286_INTRON_7_400 3' exon 31.731639 115.214267 31.731639 84.482628 58.1071335 1.764229452 0.100843 32 65 SH16006 16006 YDL137W_4_216158_217074_INTRON_1_332 intron 27.636017 103.470644 27.636017 76.834627 52.235322 1.717964276 -0.021099 32 66 SH11104 11104 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2406 2423 37.035235 96.55953 66.7973825 1.824759445 0.00788 32 67 SH15790 15790 YDL029W_4_399336_400634_INTRON_23_145 intron/exon 28.772827 103.483722 28.772827 75.710895 52.241861 1.718018639 0.069607 32 68 SH6814 6814 snR52 5' 31.693772 94.254466 62.974119 1.7991621 -0.075692 32 69 SH4733 4733 snR4 3' 29.829856 85.719928 57.774892 1.761739142 -0.00437 32 70 SH7229 7229 snR65 5' 27.826639 82.9145 55.3705695 1.74327899 -0.084394 32 71 SH15586 15586 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.194561 103.893443 29.194561 75.698882 52.4467215 1.719718345 0.097182 32 72 SH5109 5109 snR11 snR11 146 158 30.348027 90.998149 60.673088 1.782996099 -0.073757 32 73 SH8466 8466 snoRNA cluster 5 3' 27.734641 98.044923 27.734641 71.310282 49.5224615 1.694802223 0.058308 32 74 SH11034 11034 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2056 2069 496.295389 479.464529 487.879959 2.688312979 0.18671 32 75 SH7235 7235 snR65 5' 29.357612 83.442786 56.400199 1.751280636 0.01016 32 76 SH21570 21570 copy of SH5385 32.536968 91.759159 62.1480635 1.793427601 0.001235 32 77 SH1329 1329 Ile3 tRNA-exon/intron 26 42 28.894587 83.765558 56.3300725 1.75074031 -0.023659 32 78 SH1868 1868 Leu9 tRNA 81 96 31.100475 83.448229 57.274352 1.757960184 0.09301 32 79 SH17370 17370 YIL052C_9_257061_256224_INTRON_38_509 intron 29.092101 113.847476 29.092101 85.755375 57.423738 1.759091459 -0.038527 32 80 SH1422 1422 Leu1 3' flank 31.998538 91.935171 61.9668545 1.792159451 -0.018724 32 81 SH17334 17334 YIL018W_9_316766_317930_INTRON_5_404 intron 27.885723 105.4188 27.885723 78.533077 53.2094 1.725988362 -0.026042 32 82 SH15537 15537 YBR078W_2_393082_394818_INTRON_59_388 intron 30.550147 116.203391 30.550147 86.653244 58.6016955 1.767910181 0.010812 32 83 SH17890 17890 YLR048W_12_242233_243350_INTRON_91_449 intron 28.067842 108.79039 28.067842 81.722548 54.895195 1.739534332 -0.053635 32 84 SH2285 2285 Phe2 tRNA 21 33 37.423692 98.763244 68.093468 1.833105453 -0.03008 32 85 SH2102 2102 Lys4 3' flank 27.449321 78.107407 52.778364 1.722455924 -0.05032 32 86 SH12590 12590 MT_15S MT_15S 29.174732 110.718024 29.174732 82.543292 55.859012 1.74709325 0.009237 32 87 SH15439 15439 YBL072C_2_89435_88518_INTRON_1_308 intron/exon 26.610655 98.089539 26.610655 72.478884 49.5447695 1.694997812 -0.036961 32 88 SH221 221 Arg3 5' flank 31.334016 92.387218 61.860617 1.791414247 -0.0544 32 89 SH5207 5207 snR13 3' 26.896124 73.781554 50.338839 1.701903195 -0.033505 32 90 SH3280 3280 Thr2 tRNA 1 13 33.710828 83.357758 58.534293 1.767410377 0.202559 32 91 SH14434 14434 MT 21S rRNA 21S rRNA3 31.448148 115.670189 31.448148 85.222041 58.3350945 1.765929906 0.075351 32 92 SH18514 18514 YMR201C_13_667043_665844_INTRON_28_111 intron 29.498985 91.26103 29.498985 62.762045 46.130515 1.663988303 0.299609 32 93 SH7749 7749 snoRNA cluster1 intergenic/snR76 29.785356 101.592322 29.785356 72.806966 51.296161 1.710084864 0.17393 32 94 SH2729 2729 Pro5 tRNA-exon/intron 26 38 27.239387 58.950276 43.0948315 1.634425187 0.210816 32 95 SH8631 8631 snR19 / U1 RNA 651-668 + 3' 651 28.594061 75.300891 51.947476 1.715564451 0.0633 32 96 SH6733 6733 snR49 3' 30.180616 113.386108 71.783362 1.856023795 -0.492773 32 97 SH18335 18335 YML124C_13_23684_22049_INTRON_26_323 5' exon 57.002643 173.758058 57.002643 117.755415 87.379029 1.941407214 -0.013344 32 98 SH8884 8884 LSR1 / U2 RNA U2 1061 1073 36.934413 93.325894 65.1301535 1.813782102 0.075206 32 99 SH21371 21371 Leu1_5 spliced 76.22525 160.92824 118.576745 2.073999525 -0.294278 32 100 SH12554 12554 MT_15S 5' 24.862808 87.465732 24.862808 63.602924 44.232866 1.64574508 -0.03702 32 101 SH19003 19003 YOR122C_15_552886_552297_INTRON_14_222 intron 28.588592 103.962476 28.588592 76.373884 52.481238 1.720004071 0.048774 32 102 SH8849 8849 LSR1 / U2 RNA U2 886 901 64.591208 120.181653 92.3864305 1.965608188 0.069687 32 103 SH14345 14345 MT VAR1 includes 5’ processing site 3' 33.483523 118.38405 33.483523 85.900527 59.692025 1.775916312 0.14702 32 104 SH18615 18615 YNL069C_14_494998_493953_INTRON_29_477 intron 36.565042 126.063895 36.565042 90.498853 63.5319475 1.802992168 0.129079 33 2 SH15236 15236 MT COX3 3' 27.032021 106.769893 27.032021 80.737872 53.8849465 1.731467456 -0.112347 33 3 SH13699 13699 MT tRNAGlu (and 5' processing site for COB) 5' 25.309752 93.450577 25.309752 69.140825 47.2252885 1.67417462 -0.088242 33 4 SH10122 10122 RUF6 RUF6 456 472 27.436211 88.145277 57.790744 1.761858286 -0.172268 33 5 SH20531 20531 YGR148C spliced 27.095985 84.286155 55.69107 1.745785562 -0.150956 33 6 SH3472 3472 Tyr1 5' flank 28.864936 90.134167 59.4995515 1.774513692 -0.126059 33 7 SH20753 20753 YJR021C spliced 33.268774 101.399329 67.3340515 1.828234747 -0.182615 33 8 SH19243 19243 YPL090C_16_378390_377286_INTRON_7_400 intron 27.553209 113.351796 27.553209 86.798587 57.175898 1.757212994 -0.148836 33 9 SH13538 13538 MT COX1 intronic 30.180508 122.321561 30.180508 93.141053 61.6607805 1.790009018 -0.117173 33 10 SH17298 17298 YHR141C_8_382752_381991_INTRON_5_445 intron/exon 26.556816 113.202741 26.556816 87.645925 57.1013705 1.756646532 -0.227961 33 11 SH12023 12023 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7001 7018 26.820883 92.081359 59.451121 1.774160048 -0.258746 33 12 SH19244 19244 YPL090C_16_378390_377286_INTRON_7_400 intron/exon 23.991558 104.708021 23.991558 81.716463 52.8540105 1.723077947 -0.351605 33 13 SH21399 21399 Pro8 spliced 46.32533 110.522443 78.4238865 1.894448361 -0.078883 33 14 SH18105 18105 YLR367W_12_855877_857316_INTRON_698_1180 intron 25.638498 140.524493 25.638498 115.885995 70.7622465 1.849801612 -0.676468 33 15 SH10734 10734 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 556 574 25.881531 68.676993 47.279262 1.674670689 -0.038761 33 16 SH7064 7064 snR62 3' 30.233929 86.143622 58.1887755 1.764839218 0.006011 33 17 SH849 849 Glu2 tRNA 11 27 1817.019841 1196.69239 1506.856116 3.178071785 0.436867 33 18 SH15052 15052 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.858382 100.715404 25.858382 75.857022 50.857702 1.706356733 -0.135901 33 19 SH12365 12365 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.153261 104.384791 29.153261 76.23153 52.6923955 1.721747943 0.087495 33 20 SH9701 9701 RUF4 RUF4 281 301 27.16769 68.753126 47.960408 1.680882869 0.053575 33 21 SH205 205 Arg2 3' flank 29.614543 92.027894 60.8212185 1.784055117 -0.12391 33 22 SH21794 21794 copy of SH14859 27.708833 77.869267 52.78905 1.722543846 -0.029533 33 23 SH7262 7262 snR65 86-100 + 3' 86 30.504714 95.699161 63.1019375 1.800042694 -0.144786 33 24 SH12328 12328 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.233164 102.967333 28.233164 75.734169 51.9836665 1.715866908 0.033624 33 25 SH14156 14156 MT COB intronic 28.256154 116.602221 28.256154 89.346067 58.8011105 1.769385528 -0.141004 33 26 SH19677 19677 SIR1 2.4 28.185687 86.403238 57.2944625 1.75811265 -0.101503 33 27 SH20387 20387 YFL034C-B spliced 30.093636 93.168811 61.6312235 1.789800789 -0.121492 33 28 SH21762 21762 copy of SH13394 26.877996 80.916907 53.8974515 1.73156823 -0.125331 33 29 SH1546 1546 Leu4 5' flank 25.869668 75.822299 50.8459835 1.706256652 -0.134622 33 30 SH11268 11268 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3226 3243 47.454528 102.344065 74.8992965 1.874477739 0.09686 33 31 SH2293 2293 Phe2 tRNA 61 73 68.625109 118.765273 93.695191 1.971717301 0.152272 33 32 SH16751 16751 YGL076C_7_365994_364333_INTRON_565_1032 intron 27.365813 107.27398 27.365813 80.908167 54.13699 1.733494105 -0.091333 33 33 SH8569 8569 snR19 / U1 RNA U1 341 357 27.783524 77.870915 52.8272195 1.722857753 -0.024482 33 34 SH14430 14430 MT 21S rRNA 21S rRNA3 26.011854 102.896758 26.011854 77.884904 51.948379 1.715572 -0.149821 33 35 SH2416 2416 Phe4 3' flank 37.613528 80.405761 59.0096445 1.770922998 0.393372 33 36 SH8245 8245 snoRNA cluster4 5' 28.735715 99.249427 28.735715 71.513712 50.1247135 1.700051903 0.123861 33 37 SH9255 9255 snR6 / U6 RNA 3' 33.695518 103.263841 68.4796795 1.835561719 -0.208722 33 38 SH14290 14290 MT VAR1 includes 5’ processing site VAR1 27.022815 101.229369 27.022815 75.206554 51.1146845 1.708545685 -0.042812 33 39 SH840 840 Glu2 5' flank 29.542219 85.261529 57.401874 1.758926071 -0.009043 33 40 SH12008 12008 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6926 6946 27.444918 75.867551 51.6562345 1.713122745 -0.021491 33 41 SH7869 7869 snoRNA cluster1 snR73 37.08686 119.139029 37.08686 83.052169 60.0695145 1.778654122 0.31556 33 42 SH21675 21675 copy of SH9838 27.49351 72.455615 49.9745625 1.698749001 0.026202 33 43 SH14094 14094 MT COB Cytbi4 24.571797 96.78166 24.571797 73.209863 48.89083 1.68922741 -0.200101 33 44 SH19896 19896 snR17A spliced 39.778227 93.272015 66.525121 1.822985673 0.138115 33 45 SH13079 13079 MT COX1 COX1ai3 27.485096 108.051503 27.485096 81.566407 54.5257515 1.73660166 -0.091251 33 46 SH18091 18091 YLR367W_12_855877_857316_INTRON_698_1180 exon/intron 27.824808 110.663699 27.824808 83.838891 55.8318495 1.746882015 -0.095618 33 47 SH6704 6704 snR49 snR49 46 62 28.779451 82.122924 55.4511875 1.743910851 -0.011353 33 48 SH17155 17155 YHR012W_8_129473_130440_INTRON_49_167 intron/exon 28.205638 107.092695 28.205638 79.887057 54.0463475 1.732766349 -0.021663 33 49 SH14413 14413 MT 21S rRNA 21S rRNA3 34.845344 112.602849 34.845344 78.757505 56.8014245 1.754359227 0.33468 33 50 SH15114 15114 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF3 exon3 26.522451 93.882947 26.522451 68.360496 47.4414735 1.676158169 0.01278 33 51 SH693 693 Gln3 5' flank - tRNA10 5' flank 10 31.57215 81.357867 56.4650085 1.751779398 0.152401 33 52 SH12310 12310 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.334855 125.301348 31.334855 94.966493 63.150674 1.80037799 -0.100709 33 53 SH19213 19213 YPL081W_16_404945_406039_INTRON_8_508 intron 30.514659 100.473158 30.514659 70.958499 50.736579 1.705321181 0.245256 33 54 SH1111 1111 Gly4 tRNA 31 43 37.253708 98.630561 67.9421345 1.832139187 -0.031053 33 55 SH9161 9161 snR7 U5 RNA U5 76 93 24.623045 68.353978 46.4885115 1.667345641 -0.128342 33 56 SH5394 5394 snR31 snR31 36 52 26.968377 75.94528 51.4568285 1.711443015 -0.056075 33 57 SH10784 10784 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 806 822 394.451921 520.434177 457.443049 2.660337033 -0.238636 33 58 SH20708 20708 YJL024C spliced 26.919262 77.615548 52.267405 1.718230939 -0.080735 33 59 SH17465 17465 YIL148W_9_68708_69528_INTRON_9_442 intron 31.72482 129.358412 31.72482 98.633592 65.179206 1.814109066 -0.167075 33 60 SH3297 3297 Thr2 3' flank 31.371336 72.910972 52.141154 1.717180639 0.270247 33 61 SH20712 20712 YJL041W spliced 26.26011 76.625697 51.4429035 1.711325473 -0.115887 33 62 SH17693 17693 YKL006W_11_431544_432358_INTRON_130_527 intron 43.566307 143.34632 43.566307 100.780013 72.17316 1.858375721 0.054826 33 63 SH18434 18434 YMR142C_13_551206_550205_INTRON_5_406 intron 31.74992 110.703622 31.74992 79.953702 55.851811 1.74703726 0.186849 33 64 SH18945 18945 YOL127W_15_80347_81189_INTRON_14_427 intron 38.373279 142.788884 38.373279 105.415605 71.894442 1.856695317 -0.143917 33 65 SH8959 8959 snR17a / U3a U3a 81 97 25.626064 75.425486 50.525775 1.703512984 -0.147807 33 66 SH6522 6522 snR46 snR46 101 118 28.2924 87.020646 57.656523 1.760848449 -0.101512 33 67 SH19138 19138 YPL075W_16_412249_415357_INTRON_9_759 intron 31.150676 120.530819 31.150676 90.380143 60.7654095 1.783656429 -0.028277 33 68 SH10508 10508 RUF8 RUF8 466 487 27.117018 67.568998 47.343008 1.675255848 0.066651 33 69 SH2664 2664 Pro4 5' flank - tRNA2 2 29.872192 94.772205 62.3221985 1.794642765 -0.157773 33 70 SH21765 21765 copy of SH13600 27.834462 75.248703 51.5415825 1.712157749 0.013265 33 71 SH18120 18120 YLR388W_12_898158_898821_INTRON_1_488 exon/intron 27.859482 102.001839 27.859482 75.142357 51.5009195 1.711814983 0.016374 33 72 SH21445 21445 copy of SH42 32.181284 85.535052 58.858168 1.76980674 0.100523 33 73 SH2333 2333 Phe3 5' flank - tRNA10 10 29.221369 84.438917 56.830143 1.754578749 -0.010486 33 74 SH4972 4972 snR9 3' 38.076239 97.827938 67.9520885 1.832202809 0.003769 33 75 SH5210 5210 snR30 5' 26.52122 79.462845 52.9920325 1.724210577 -0.132354 33 76 SH15547 15547 YBR078W_2_393082_394818_INTRON_59_388 intron 31.22473 119.326094 31.22473 89.101364 60.163047 1.779329823 -0.003054 33 77 SH9639 9639 RUF4 5' 29.064782 79.770047 54.4174145 1.735737904 0.036339 33 78 SH6139 6139 snR39B snR39B 36 54 33.926781 100.206987 67.066884 1.826508129 -0.141855 33 79 SH12594 12594 MT_15S MT_15S 27.432071 103.51149 27.432071 77.079419 52.255745 1.718134044 -0.03824 33 80 SH10468 10468 RUF8 RUF8 266 287 27.926537 77.396617 52.661577 1.72149386 -0.008691 33 81 SH3059 3059 Ser3 5' flank - tRNA8 8 33.049716 99.20855 66.129133 1.820392829 -0.143908 33 82 SH13196 13196 MT COX1 Exon4 28.270616 100.01421 28.270616 72.743594 50.507105 1.703352476 0.076074 33 83 SH12268 12268 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.893748 129.190303 32.893748 97.296555 65.0951515 1.813548642 -0.108433 33 84 SH551 551 Cys1 tRNA 56 68 30.085039 91.068736 60.5768875 1.782306955 -0.086606 33 85 SH3262 3262 Thr2 5' flank 27.063243 73.921515 50.492379 1.703225833 -0.023395 33 86 SH7175 7175 snR64 5' 30.780632 74.455308 52.61797 1.721134089 0.213446 33 87 SH3205 3205 Ser5 3' flank 37.401761 91.375171 64.388466 1.808808079 0.128849 33 88 SH6544 6544 snR46 3' 26.736519 82.305154 54.5208365 1.73656251 -0.152307 33 89 SH12574 12574 MT_15S MT_15S 27.07895 101.447775 27.07895 75.368825 51.2238875 1.709472535 -0.040884 33 90 SH21469 21469 copy of SH1239 33.738448 132.805426 83.271937 1.920498667 -0.723985 33 91 SH21216 21216 YOR122C spliced 35.913065 134.199176 85.0561205 1.92970557 -0.691624 33 92 SH14716 14716 MT tRNA cys; tRNA his 5' 27.051999 101.249702 27.051999 75.197703 51.124851 1.708632055 -0.04062 33 93 SH4058 4058 SRP RNA SRP RNA 181 200 30.939892 107.921491 69.4306915 1.841551491 -0.371232 33 94 SH3459 3459 Trp1 3' flank 27.487312 78.637527 53.0624195 1.724787049 -0.054486 33 95 SH4755 4755 snR5 5' 26.981637 81.21733 54.0994835 1.733193119 -0.12179 33 96 SH6654 6654 snR48 96-113 + 3' 96 28.13748 75.627568 51.882524 1.715021096 0.028638 33 97 SH3555 3555 Tyr2 tRNA-intron/exon 46 63 26.81382 65.388324 46.101072 1.663711024 0.076476 33 98 SH6649 6649 snR48 snR48 71 87 29.911436 77.556114 53.733775 1.730247352 0.118622 33 99 SH14590 14590 MT 21S rRNA Sce1 endonuc 26.86323 106.549858 26.86323 80.686628 53.774929 1.730579846 -0.123513 33 100 SH1761 1761 Leu7 3' flank 27.33072 75.218015 51.2743675 1.709900312 -0.021139 33 101 SH5867 5867 snR35 snR35 521 540 26.901241 78.752433 52.826837 1.722854608 -0.096556 33 102 SH4565 4565 U3b (snR17b) U3b 381 395 32.302373 80.684079 56.493226 1.751996375 0.19587 33 103 SH5353 5353 snR30 3' 33.777441 86.982243 60.379842 1.780891972 0.139359 33 104 SH6036 6036 snR37 snR37 96 111 389.476848 591.253725 490.3652865 2.690519718 -0.459966 34 2 SH19847 19847 Negative Control 32.890304 104.645993 68.7681485 1.837387332 -0.256394 34 3 SH5433 5433 snR31 3' 26.859589 75.266428 51.0630085 1.708106399 -0.055243 34 4 SH7480 7480 snR71 snR71 16 30 50.950002 97.076801 74.0134015 1.869310364 0.264947 34 5 SH20013 20013 YBR084C-A spliced 30.642644 88.838778 59.740711 1.776270387 -0.023675 34 6 SH20269 20269 YDR424C spliced 26.077438 70.60057 48.339004 1.684297698 -0.050746 34 7 SH12210 12210 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 48.62266 150.256879 48.62266 102.634219 75.6284395 1.878685139 0.11196 34 8 SH19980 19980 YBL091C-A spliced 27.026793 76.010782 51.5187875 1.711965633 -0.052735 34 9 SH21320 21320 YPL249C-A spliced 25.490952 62.527642 44.009297 1.643544431 0.026944 34 10 SH20794 20794 YKL156W spliced 25.554692 73.082542 49.318617 1.69301089 -0.122898 34 11 SH11056 11056 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2166 2182 38.108274 75.063186 56.58573 1.752706923 0.528806 34 12 SH18834 18834 YNL302C_14_62942_61957_INTRON_21_571 intron 26.462144 119.800503 26.462144 94.338359 60.4002515 1.781038747 -0.312909 34 13 SH17500 17500 YJL041W_10_365480_368069_INTRON_2_119 3' exon 40.409035 138.299397 40.409035 98.890362 69.6496985 1.842919241 0.030413 34 14 SH10870 10870 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1236 1252 34149.4772 13679.11205 23914.29462 4.378657575 0.412878 34 15 SH15169 15169 MT tRNA Val 3' 34.966951 143.975243 34.966951 110.008292 72.4876215 1.86026385 -0.30836 34 16 SH2583 2583 Pro2 3' flank 28.974179 66.598396 47.7862875 1.679303292 0.208107 34 17 SH19487 19487 YPT1 40.604811 95.373858 67.9893345 1.83244079 0.109072 34 18 SH14012 14012 MT COB intronic 28.418362 103.849254 28.418362 76.430892 52.424627 1.719535349 0.036774 34 19 SH21787 21787 copy of SH14442 27.12103 68.067318 47.594174 1.677553794 0.059885 34 20 SH12431 12431 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.243612 114.342659 32.243612 83.099047 57.6713295 1.760959963 0.14781 34 21 SH19760 19760 Negative Control 30.223374 98.489521 64.3564475 1.808592063 -0.205547 34 22 SH7617 7617 snR189 snR189 156 175 28.321939 70.028893 49.175416 1.691748043 0.116062 34 23 SH15618 15618 YBR181C_2_592732_591670_INTRON_7_358 intron 28.569262 117.337284 28.569262 89.768022 59.168642 1.772091602 -0.133543 34 24 SH3735 3735 Val4 5' flank 28.421582 69.264542 48.843062 1.688802882 0.133357 34 25 SH18984 18984 YOR096W_15_505793_506766_INTRON_145_545 intron 30.566572 109.144001 30.566572 79.577429 55.0720005 1.740930853 0.133684 34 26 SH12718 12718 MT ORF 8 (hypothetical) 3' 27.980909 96.890749 27.980909 69.90984 48.9453745 1.689711656 0.094365 34 27 SH14528 14528 MT 21S rRNA 21S rRNA3 27.707833 108.403653 27.707833 81.69582 54.7018265 1.738001828 -0.077631 34 28 SH9700 9700 RUF4 RUF4 276 297 27.311934 77.187817 52.2498755 1.71808526 -0.047916 34 29 SH14403 14403 MT 21S rRNA 21S rRNA3 26.749141 102.73465 26.749141 76.985509 51.867325 1.71489385 -0.084849 34 30 SH16540 16540 YER131W_5_423587_424307_INTRON_1_361 3' exon 73.5048 201.631717 73.5048 129.126917 101.3158585 2.005677429 0.067529 34 31 SH10752 10752 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 646 664 32.617096 95.484269 64.0506825 1.806523762 -0.077471 34 32 SH8752 8752 LSR1 / U2 RNA U2 401 413 32.523266 91.293442 61.908354 1.791749257 0.011208 34 33 SH1099 1099 Gly4 5' flank 28.125854 71.220273 49.6730635 1.696120945 0.086495 34 34 SH20303 20303 YER003C spliced 32.719487 97.217079 64.968283 1.812701389 -0.111314 34 35 SH12045 12045 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7111 7128 30.545066 83.728715 57.1368905 1.756916602 0.063701 34 36 SH3371 3371 Thr4 5' flank 26.117676 77.270783 51.6942295 1.713442067 -0.134406 34 37 SH6736 6736 snR49 3' 30.662436 67.732606 49.197521 1.69194322 0.300943 34 38 SH21747 21747 copy of SH12762 61.432962 127.862119 94.6475405 1.976109333 -0.097325 34 39 SH15199 15199 MT COX3 cox3 30.994457 112.976193 30.994457 82.981736 56.9880965 1.755784151 0.097112 34 40 SH9795 9795 RUF4 RUF4 751 768 29.059314 73.798809 51.4290615 1.711208599 0.113885 34 41 SH9252 9252 snR6 / U6 RNA 3' 29.471337 100.005552 64.7384445 1.81116226 -0.259004 34 42 SH11195 11195 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2861 2879 27.425805 71.415585 49.420695 1.693908849 0.035327 34 43 SH7653 7653 snoRNA cluster1 5' 27.327942 99.402797 27.327942 73.074855 50.2013985 1.700715816 0.006403 34 44 SH5934 5934 snR36 snR36 126 140 34.065622 77.567693 55.8166575 1.746763826 0.32794 34 45 SH21897 21897 copy of SH19002 27.281572 74.213586 50.747579 1.705415328 -0.011705 34 46 SH9102 9102 snR14 / U4 RNA U4 126 142 32.144482 92.567582 62.356032 1.794878471 -0.026951 34 47 SH15202 15202 MT COX3 cox3 29.489582 106.650813 29.489582 78.161231 53.8254065 1.730987318 0.084078 34 48 SH344 344 Arg5 tRNA 56 68 33.478198 98.909197 66.1936975 1.820816641 -0.126761 34 49 SH6837 6837 snR52 91-92 + 3' 91 27.731631 70.635027 49.183329 1.691817921 0.067229 34 50 SH18778 18778 YNL265C_14_145280_144279_INTRON_28_132 intron 27.079427 106.968033 27.079427 80.888606 53.9840165 1.732265194 -0.110913 34 51 SH12009 12009 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6931 6949 29.606222 88.695671 59.1509465 1.771961698 -0.067233 34 52 SH19388 19388 YPR043W_16_654161_654842_INTRON_3_405 intron 28.035224 100.768255 28.035224 73.733031 50.8841275 1.706582332 0.047008 34 53 SH17443 17443 YIL133C_9_99416_98527_INTRON_32_321 3' exon 73.057875 192.228986 73.057875 120.171111 96.614493 1.985042279 0.193898 34 54 SH3155 3155 Ser4 3' flank 26.961734 75.008985 50.9853595 1.707445486 -0.044646 34 55 SH19695 19695 Negative Control 32.338169 80.091919 56.215044 1.749852555 0.208748 34 56 SH2438 2438 Phe5 5' flank 47.732229 117.561718 82.6469735 1.917226955 -0.175174 34 57 SH14172 14172 MT COB intronic 25.475354 102.936106 25.475354 78.460752 51.968053 1.715736446 -0.197025 34 58 SH15198 15198 MT COX3 cox3 26.410959 98.396984 26.410959 72.986025 49.698492 1.696343211 -0.058159 34 59 SH3808 3808 RNaseP RNaseP 6 22 28.591542 86.806155 57.6988485 1.761167146 -0.080597 34 60 SH18232 18232 YML026C_13_223828_222987_INTRON_48_448 intron 26.120083 97.902951 26.120083 72.782868 49.4514755 1.694179254 -0.076811 34 61 SH7782 7782 snoRNA cluster1 intergenic 26.154607 96.586367 26.154607 71.43176 48.7931835 1.688359154 -0.056287 34 62 SH1460 1460 Leu2 tRNA 71 87 97.557202 220.482544 159.019873 2.201451402 -0.560885 34 63 SH14268 14268 MT VAR1 includes 5’ processing site VAR1 25.832318 96.290507 25.832318 71.458189 48.6452535 1.687040471 -0.08052 34 64 SH15834 15834 YDL075W_4_322225_322987_INTRON_58_478 intron 27.96726 116.786935 27.96726 89.819675 58.8934675 1.770067125 -0.162937 34 65 SH18735 18735 YNL162W_14_331319_332151_INTRON_5_516 5' exon 32.657933 123.21485 32.657933 91.556917 62.107425 1.793143524 0.008887 34 66 SH11646 11646 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5116 5134 33.115318 71.874031 52.4946745 1.720115247 0.386525 34 67 SH788 788 Glu1 5' flank 28.949685 83.826906 56.3882955 1.751188967 -0.020803 34 68 SH11833 11833 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6051 6064 30056.88993 18409.01568 24232.95281 4.384406337 -0.222817 34 69 SH4700 4700 snR4 snR4 36 53 31.767292 77.151666 54.459479 1.736073482 0.237277 34 70 SH5649 5649 snR34 snR34 166 188 32.041569 75.605972 53.8237705 1.730974118 0.273738 34 71 SH15807 15807 YDL061C_4_341182_340627_INTRON_1_408 intron 27.378588 107.890664 27.378588 81.512076 54.445332 1.73596065 -0.097899 34 72 SH2185 2185 Met2 tRNA 56 68 69.023234 126.93983 97.981532 1.991144226 0.033698 34 73 SH9503 9503 RUF3 5' 30.799257 87.367775 59.083516 1.771466332 0.008978 34 74 SH17316 17316 YHR203C_8_505526_504472_INTRON_15_283 intron/exon 26.037682 96.481059 26.037682 71.443377 48.7405295 1.687890243 -0.065072 34 75 SH17204 17204 YHR039C-A_8_187670_187164_INTRON_4_165 5' exon 39.958763 143.164391 39.958763 104.205628 72.0821955 1.857828006 -0.086794 34 76 SH16717 16717 YGL031C_7_438393_437938_INTRON_1_456 intron 26.666939 96.753198 26.666939 71.086259 48.876599 1.689100979 -0.014275 34 77 SH8561 8561 snR19 / U1 RNA U1 301 318 29.231697 67.964673 48.598185 1.68662005 0.205661 34 78 SH21502 21502 copy of SH2552 79.245098 151.645447 115.4452725 2.062376153 -0.145526 34 79 SH21279 21279 YPL129W spliced 27.762703 89.648124 58.7054135 1.768678151 -0.169805 34 80 SH11810 11810 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5936 5956 30.730654 76.516908 53.623781 1.729357433 0.183038 34 81 SH9918 9918 RUF5-1 RUF5-1 396 413 28.601503 75.03259 51.8170465 1.714472655 0.067364 34 82 SH14705 14705 MT tRNA thr2 tRNA 31.069885 125.407758 31.069885 95.337873 63.203879 1.800743733 -0.115893 34 83 SH3433 3433 Trp1 5' flank - tRNA10 10 107.733255 176.894059 142.313657 2.153246579 -0.067986 34 84 SH8828 8828 LSR1 / U2 RNA U2 781 802 27.950309 75.199433 51.574871 1.71243815 0.021746 34 85 SH17591 17591 YJL191W_10_73786_74610_INTRON_11_418 intron 27.032166 98.50376 27.032166 72.471594 49.75188 1.696809496 -0.006599 34 86 SH16421 16421 YER056C-A_5_270183_269421_INTRON_38_434 3' exon 41.974566 155.436889 41.974566 114.462323 78.2184445 1.893309175 -0.235289 34 87 SH7169 7169 snR64 5' 39.54976 254.711806 147.130783 2.167703546 -1.830747 34 88 SH16385 16385 YER007C-A_5_166884_166236_INTRON_12_114 intron/exon 26.834297 108.391982 26.834297 82.557685 54.695991 1.737955495 -0.148496 34 89 SH14526 14526 MT 21S rRNA 21S rRNA3 27.333968 102.62254 27.333968 76.288572 51.81127 1.714424238 -0.034664 34 90 SH21290 21290 YPL175W spliced 29.454167 89.112802 59.2834845 1.772933722 -0.081383 34 91 SH57 57 Ala2 5' flank 31.497115 116.911149 74.204132 1.870428089 -0.519873 34 92 SH5609 5609 snR34 5' 29.282139 97.183584 63.2328615 1.800942836 -0.223344 34 93 SH18736 18736 YNL162W_14_331319_332151_INTRON_5_516 exon/intron 29.445052 124.573108 29.445052 96.128056 62.786554 1.797866648 -0.199024 34 94 SH16012 16012 YDL137W_4_216158_217074_INTRON_1_332 intron 31.725916 137.853677 31.725916 107.127761 69.4268385 1.841527389 -0.334799 34 95 SH7878 7878 snoRNA cluster1 snR73 29.038532 128.490697 29.038532 100.452165 64.7453485 1.811208573 -0.285699 34 96 SH11042 11042 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2096 2109 130.223618 143.08072 136.652169 2.135616529 0.517719 34 97 SH9465 9465 RUF2 RUF2 166 183 29.604122 84.659746 57.131934 1.756878926 0.004716 34 98 SH14045 14045 MT COB Cytbi4 24.514493 90.688554 24.514493 67.174061 45.844277 1.661285128 -0.118905 34 99 SH12956 12956 MT COX1 COX1ai2 27.853567 111.854995 27.853567 85.001428 56.4274975 1.75149079 -0.10746 34 100 SH17834 17834 YKR094C_11_618384_617630_INTRON_9_376 intron 32.664625 119.131486 32.664625 87.466861 60.065743 1.778626854 0.085926 34 101 SH20618 20618 YHR097C spliced 27.013325 75.962139 51.487732 1.711703762 -0.053081 34 102 SH12494 12494 MT_tRNA Pro 5' 24.992298 99.020641 24.992298 75.028343 50.0103205 1.699059638 -0.190968 34 103 SH13733 13733 MT COB Exon1 31.252504 116.70194 31.252504 86.449436 58.85097 1.769753625 0.044877 34 104 SH10346 10346 RUF7 RUF7 341 357 35.906966 102.266584 69.086775 1.83939492 -0.136018 35 2 SH1893 1893 Lys1 5' flank 48.902333 121.495106 85.1987195 1.930433068 -0.219111 35 3 SH18656 18656 YNL112W_14_413636_416278_INTRON_1274_2275 intron 25.819089 103.349218 25.819089 78.530129 52.174609 1.717459203 -0.172062 35 4 SH14695 14695 MT tRNA thr2 5' 24.868955 94.125836 24.868955 70.256881 47.562918 1.677268491 -0.137444 35 5 SH14569 14569 MT 21S rRNA 21S rRNA3 356.434223 724.492202 356.434223 369.057979 362.746101 2.559602753 0.185402 35 6 SH3190 3190 Ser5 71-82 + 3' flank 71 41.085978 94.083915 67.5849465 1.829849974 0.146852 35 7 SH210 210 Arg3 5' flank 28.449102 89.31605 58.882576 1.769986801 -0.131376 35 8 SH573 573 Gln1 5' flank 26.811931 78.567049 52.68949 1.721723995 -0.100462 35 9 SH6281 6281 snR42 snR42 186 203 42.334792 105.561554 73.948173 1.868927449 -0.063771 35 10 SH17177 17177 YHR021C_8_148660_147862_INTRON_4_553 intron 29.584069 115.29982 29.584069 86.715751 58.14991 1.764549047 -0.033311 35 11 SH16084 16084 YDR025W_4_491510_492319_INTRON_46_384 intron 25.324909 92.970483 25.324909 68.645574 46.9852415 1.671961463 -0.080134 35 12 SH16436 16436 YER074W_5_306319_307192_INTRON_4_469 intron 26.953172 91.973822 26.953172 66.02065 46.486911 1.667330689 0.077224 35 13 SH6058 6058 snR37 snR37 206 223 28.482856 71.508835 49.9958455 1.698933917 0.106905 35 14 SH17016 17016 YGR148C_7_788173_787307_INTRON_1_392 intron 30.849014 117.639011 30.849014 87.789997 59.3195055 1.773197522 0.00368 35 15 SH8337 8337 snoRNA cluster4 snR53 27.277548 89.293579 27.277548 63.016031 45.1467895 1.654626872 0.145655 35 16 SH20742 20742 YJL191W spliced 25.501913 75.458552 50.4802325 1.703121346 -0.15758 35 17 SH6497 6497 snR46 5' 30.126962 80.986726 55.556844 1.744737567 0.088813 35 18 SH12127 12127 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7521 7538 31.91714 92.42311 62.170125 1.793581741 -0.030322 35 19 SH18845 18845 YNL312W_14_48286_49215_INTRON_8_115 intron 28.192019 102.140807 28.192019 74.948788 51.5704035 1.712400529 0.041313 35 20 SH8232 8232 snoRNA cluster 3; 3' 29.822571 113.013979 29.822571 84.191408 57.0069895 1.755928107 0.023137 35 21 SH21475 21475 copy of SH1442 32.570766 99.811949 66.1913575 1.820801288 -0.168698 35 22 SH13004 13004 MT COX1 COX1ai2 28.34501 105.194056 28.34501 77.849046 53.097028 1.725070213 0.013498 35 23 SH3744 3744 Val4 5' flank 28.581503 84.383602 56.4825525 1.751914315 -0.051547 35 24 SH15668 15668 YBR191W_2_606228_607098_INTRON_12_399 5' exon 35.535039 134.26115 35.535039 99.726111 67.630575 1.83014308 -0.092698 35 25 SH2065 2065 Lys4 5' flank - tRNA7 7 32.584559 86.400916 59.4927375 1.774463953 0.10161 35 26 SH17587 17587 YJL191W_10_73786_74610_INTRON_11_418 intron 29.804798 129.97331 29.804798 101.168512 65.486655 1.816152808 -0.271965 35 27 SH12298 12298 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.579922 120.078313 36.579922 84.498391 60.5391565 1.782036366 0.26874 35 28 SH17746 17746 YKL157W_11_154993_158183_INTRON_282_664 intron 34.228067 135.188331 34.228067 101.960264 68.0941655 1.833109902 -0.169521 35 29 SH2388 2388 Phe4 5' flank - tRNA8 8 28.392571 68.007918 48.2002445 1.683049241 0.148959 35 30 SH10203 10203 RUF6 RUF6 861 885 27.107018 78.719652 52.913335 1.723565135 -0.081781 35 31 SH7076 7076 snR62 3' 29.237806 84.054074 56.64594 1.753168788 -0.004853 35 32 SH13796 13796 MT COB intronic 26.662742 103.352748 26.662742 77.690006 52.176374 1.717473894 -0.09982 35 33 SH21508 21508 copy of SH2800 37.830089 93.872829 65.851459 1.818565402 0.083556 35 34 SH11273 11273 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3251 3269 28.563049 76.869789 52.716419 1.721945901 0.04061 35 35 SH12949 12949 MT COX1 COX1ai2 28.460373 116.473566 28.460373 89.013193 58.736783 1.768910157 -0.125591 35 36 SH5678 5678 snR34 snR34 311 329 34.967194 85.938446 60.45282 1.781416565 0.195885 35 37 SH21904 21904 copy of SH19399 30.274677 83.457711 56.866194 1.754854162 0.056816 35 38 SH14601 14601 MT 21S rRNA Sce1 endonuc 30.20383 102.491047 30.20383 73.287217 51.7455235 1.713872785 0.193635 35 39 SH8416 8416 snoRNA cluster 5 snR190 37.087202 125.046656 37.087202 88.959454 63.023328 1.799501333 0.176038 35 40 SH339 339 Arg5 tRNA 31 50 28.505804 76.488755 52.4972795 1.720136798 0.041805 35 41 SH13186 13186 MT COX1 Exon4 29.072246 109.819381 29.072246 81.747135 55.4096905 1.743585724 0.012311 35 42 SH6363 6363 snR43 snR43 56 73 39.093831 106.312496 72.7031635 1.861553309 -0.146086 35 43 SH5047 5047 snR10 3' 27.773914 86.531817 57.1528655 1.75703801 -0.130721 35 44 SH9930 9930 RUF5-1 RUF5-1 456 472 27.940681 71.337164 49.6389225 1.695822346 0.0722 35 45 SH7407 7407 snR69 5' 28.102498 72.513841 50.3081695 1.701638515 0.067623 35 46 SH8629 8629 snR19 / U1 RNA U1 641 660 28.167038 68.393846 48.280442 1.683771237 0.128171 35 47 SH2418 2418 Phe4 3' flank 27.740817 77.033348 52.3870825 1.719224213 -0.016553 35 48 SH5018 5018 snR10 snR10 121 137 293.325271 593.313986 443.3196285 2.646716961 -0.82766 35 49 SH9996 9996 RUF5-1 3' 33.872833 93.147817 63.510325 1.802844335 0.005125 35 50 SH6962 6962 snR58 3' 27.285959 67.334441 47.3102 1.674954784 0.081948 35 51 SH457 457 Asp1 3' flank 29.651162 81.332154 55.491658 1.744227701 0.054557 35 52 SH19539 19539 CBP1 1.2 31.393753 99.86682 65.6302865 1.8171043 -0.201274 35 53 SH1555 1555 Leu4 5' flank 25.766386 68.850816 47.308601 1.674940105 -0.049774 35 54 SH19705 19705 Negative Control 28.794758 86.325907 57.5603325 1.760123294 -0.062535 35 55 SH4620 4620 snR3 snR3 16 30 29.985587 79.557291 54.771439 1.738554151 0.09778 35 56 SH699 699 Gln3 tRNA 26 42 38.875372 102.145801 70.5105865 1.848254327 -0.068229 35 57 SH13119 13119 MT COX1 COX1ai3 27.418052 94.133204 27.418052 67.715152 47.566602 1.677302128 0.085838 35 58 SH13559 13559 MT COX1 Exon 6 25.846425 110.786762 25.846425 85.940337 55.893381 1.747360381 -0.259374 35 59 SH1592 1592 Leu4 3' flank 41.219223 92.535594 66.8774085 1.825279436 0.183743 35 60 SH20087 20087 YDL012C spliced 45.731271 102.868315 74.299793 1.870987604 0.054793 35 61 SH18925 18925 YOL121C_15_92849_92025_INTRON_21_410 intron 30.590695 120.291222 30.590695 90.700527 60.645611 1.782799376 -0.05803 35 62 SH8319 8319 snoRNA cluster4 intergenic 26.524251 93.123206 26.524251 67.598955 47.061603 1.672666716 0.023661 35 63 SH16165 16165 YDR139C_4_733917_733611_INTRON_150_222 5' exon 30.84004 124.613759 30.84004 94.773719 62.8068795 1.798007216 -0.115121 35 64 SH20669 20669 YIL069C spliced 29.401439 88.083743 58.742591 1.768953098 -0.065813 35 65 SH7484 7484 snR71 snR71 36 57 26.198029 65.231633 45.714831 1.660057119 0.035063 35 66 SH2062 2062 Lys4 5' flank 28.726977 94.164037 61.445507 1.788490132 -0.200135 35 67 SH1539 1539 Leu3 3' flank 28.820746 92.461109 60.6409275 1.782765835 -0.16754 35 68 SH6537 6537 snR46 snR46 176 194 31.058993 83.57205 57.3155215 1.758272248 0.08893 35 69 SH6212 6212 snR40 3' 28.971072 77.243456 53.107264 1.725153928 0.06248 35 70 SH5638 5638 snR34 snR34 111 128 36.353278 93.399919 64.8765985 1.812088072 0.060041 35 71 SH19708 19708 Negative Control 29.51913 90.616939 60.0680345 1.778643422 -0.104328 35 72 SH15383 15383 YBL027W_2_168385_169338_INTRON_3_386 intron/exon 31.381101 127.942688 31.381101 97.561587 64.471344 1.809366724 -0.154195 35 73 SH15680 15680 YBR191W_2_606228_607098_INTRON_12_399 intron 39.829199 130.283922 39.829199 91.454723 65.641961 1.817181547 0.179753 35 74 SH4204 4204 telomerase RNA telomerase 56 77 25.936402 70.971744 48.454073 1.685330289 -0.066222 35 75 SH7713 7713 snoRNA cluster1 snR77 155.259443 341.349308 155.259443 187.089865 171.174654 2.233439459 0.27058 35 76 SH13335 13335 MT COX1 COX1-ai5a 26.676273 101.081233 26.676273 75.40496 51.0406165 1.707915911 -0.070196 35 77 SH19922 19922 YAL030W spliced 29.245083 87.452385 58.348734 1.766031438 -0.061822 35 78 SH6026 6026 snR37 snR37 46 65 36.575914 91.851753 64.2138335 1.807628598 0.099201 35 79 SH10090 10090 RUF6 RUF6 296 313 27.711474 83.053089 55.3822815 1.743370843 -0.09388 35 80 SH9904 9904 RUF5-1 RUF5-1 326 345 30.845726 82.568614 56.70717 1.753637974 0.098395 35 81 SH15535 15535 YBR078W_2_393082_394818_INTRON_59_388 intron 28.863572 104.67517 28.863572 76.811598 52.837585 1.722942959 0.061089 35 82 SH11164 11164 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2706 2728 28.975714 76.7965 52.886107 1.723341599 0.068592 35 83 SH17285 17285 YHR141C_8_382752_381991_INTRON_5_445 intron 28.782656 111.806294 28.782656 84.023638 56.403147 1.751303336 -0.034052 35 84 SH5795 5795 snR35 snR35 161 182 30.693454 76.564038 53.628746 1.729397642 0.180139 35 85 SH9686 9686 RUF4 RUF4 206 220 106.111225 164.732441 135.421833 2.131688688 0.036344 35 86 SH12968 12968 MT COX1 COX1ai2 28.681362 103.86433 28.681362 76.182968 52.432165 1.719597791 0.057384 35 87 SH12638 12638 MT_15S MT_15S 28.573169 120.95357 28.573169 93.380401 60.976785 1.785164522 -0.194392 35 88 SH8150 8150 snoRNA cluster 3; intergenic 29.25339 105.178452 29.25339 76.925062 53.089226 1.725006394 0.084887 35 89 SH18804 18804 YNL301C_14_64561_63569_INTRON_113_544 intron 29.752699 110.534991 29.752699 81.782292 55.7674955 1.746381141 0.055472 35 90 SH17110 17110 YHR001W-A_8_107819_108115_INTRON_7_69 intron 29.612784 119.589272 29.612784 90.976488 60.294636 1.780278678 -0.106214 35 91 SH12639 12639 MT_15S MT_15S 27.015431 98.602498 27.015431 72.587067 49.801249 1.697240235 -0.009319 35 92 SH6336 6336 snR43 5' 31.4092 78.666861 55.0380305 1.740662885 0.196445 35 93 SH5826 5826 snR35 snR35 316 333 31.246338 98.227567 64.7369525 1.811152251 -0.171688 35 94 SH912 912 Glu3 71-72 + 3' flank 71 28.667147 63.959807 46.313477 1.665707387 0.226382 35 95 SH6166 6166 snR39B 3' 30.457512 93.629111 62.0433115 1.79269497 -0.11303 35 96 SH222 222 Arg3 5' flank 29.998106 81.918049 55.9580775 1.747862785 0.069289 35 97 SH15122 15122 MT tRNA Phe 5' 27.344683 88.490229 27.344683 62.145546 44.7451145 1.650745624 0.164386 35 98 SH8781 8781 LSR1 / U2 RNA U2 546 560 46.266392 97.342502 71.804447 1.856151342 0.176755 35 99 SH6071 6071 snR37 snR37 271 287 30.33457 85.895051 58.1148105 1.764286826 0.014929 35 100 SH751 751 Gln4 tRNA 26 42 29.373824 78.978425 54.1761245 1.733807934 0.066253 35 101 SH13177 13177 MT COX1 Exon4 26.202651 103.191345 26.202651 77.988694 52.0956725 1.716801649 -0.137024 35 102 SH11662 11662 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5196 5209 41.920016 93.492708 67.706362 1.830629479 0.176389 35 103 SH13540 13540 MT COX1 intronic 27.088145 102.662235 27.088145 76.57409 51.8311175 1.714590573 -0.055454 35 104 SH9179 9179 snR7 U5 RNA U5 166 186 279.801085 563.95964 421.8803625 2.625189311 -0.80621 36 2 SH9281 9281 RUF1 5' 26.597378 80.361268 53.479323 1.728185901 -0.138208 36 3 SH2920 2920 Pro8 3' flank 25.224077 67.753339 46.488708 1.667347477 -0.074296 36 4 SH6505 6505 snR46 snR46 16 32 27.679814 68.091608 47.885711 1.68020594 0.098817 36 5 SH21083 21083 YMR292W spliced 29.727182 81.328734 55.527958 1.744511703 0.059424 36 6 SH6431 6431 snR45 snR45 1 18 49.319435 101.479575 75.399505 1.877368495 0.147115 36 7 SH21157 21157 YNL301C spliced 29.537268 80.684553 55.1109105 1.741237586 0.05531 36 8 SH17014 17014 YGR148C_7_788173_787307_INTRON_1_392 intron 29.419335 111.136242 29.419335 82.716907 56.068121 1.748716002 0.022865 36 9 SH5727 5727 snR34 3' 27.133024 87.36027 57.246647 1.757750055 -0.184249 36 10 SH778 778 Glu1 5' flank 38.207937 100.151652 69.1797945 1.839979268 -0.041811 36 11 SH13317 13317 MT COX1 COX1-ai5a 25.359799 89.741987 25.359799 65.382188 45.3709935 1.656778289 -0.028063 36 12 SH16900 16900 YGL226C-A_7_73156_72747_INTRON_22_170 intron 31.325403 132.095865 31.325403 101.770462 66.5479325 1.823134567 -0.24148 36 13 SH770 770 Gln4 3' flank 78.674252 121.635934 100.155093 2.000673039 0.248492 36 14 SH14061 14061 MT COB Cytbi4 26.943637 106.079867 26.943637 80.13623 53.5399335 1.728677827 -0.111029 36 15 SH15954 15954 YDL130W_4_229906_230527_INTRON_115_415 intron 32.113387 127.80059 32.113387 96.687203 64.400295 1.808887857 -0.116197 36 16 SH7522 7522 snR79 5' 28.015107 82.986834 55.5009705 1.744300577 -0.072549 36 17 SH8424 8424 snoRNA cluster 5 snR190/intergenic 28.01339 124.247638 28.01339 97.234248 62.623819 1.796739549 -0.283435 36 18 SH7962 7962 snoRNA cluster 2 5' 32.865972 118.338921 32.865972 86.472949 59.6694605 1.775752111 0.11183 36 19 SH20095 20095 YDL029W spliced 29.162136 78.0932 53.627668 1.729388912 0.063911 36 20 SH4661 4661 snR3 3' 27.427455 76.425902 51.9266785 1.715390544 -0.030032 36 21 SH20011 20011 YBR084C-A spliced 37.292453 102.123283 69.707868 1.8432818 -0.101976 36 22 SH17100 17100 YHL001W_8_104270_105084_INTRON_130_527 intron 28.306043 94.756742 28.306043 67.450699 47.878371 1.680139366 0.150976 36 23 SH16195 16195 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 28.617293 110.125258 28.617293 82.507965 55.562629 1.744782787 -0.026683 36 24 SH4020 4020 SRP RNA 5' - 8 8 28.376359 87.303444 57.8399015 1.762227545 -0.099545 36 25 SH453 453 Asp1 3' flank 30.187677 87.611776 58.8997265 1.770113278 -0.022181 36 26 SH2030 2030 Lys3 96 + 3' flank 96 115 29.619379 73.523126 51.5712525 1.712407679 0.153601 36 27 SH11270 11270 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3236 3253 31.634005 79.192966 55.4134855 1.743615468 0.196743 36 28 SH20353 20353 YER117W spliced 27.075209 70.267125 48.671167 1.68727176 0.026107 36 29 SH17552 17552 YJL189W_10_75932_76473_INTRON_7_392 exon/intron 29.494831 112.386289 29.494831 83.891458 56.6931445 1.753530546 0.013577 36 30 SH7500 7500 snR71 3' 31.887798 85.292371 58.5900845 1.767824124 0.092657 36 31 SH17641 17641 YJR145C_10_702761_701720_INTRON_15_270 intron 24.93368 99.189039 24.93368 75.255359 50.0945195 1.699790215 -0.198389 36 32 SH16753 16753 YGL076C_7_365994_364333_INTRON_565_1032 intron 27.081827 93.396548 27.081827 67.314721 47.198274 1.673926117 0.067768 36 33 SH11791 11791 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5841 5856 58.430118 102.854664 80.642391 1.906563396 0.272121 36 34 SH9371 9371 RUF1 RUF1 431 449 26.731252 75.064576 50.897914 1.706699984 -0.06189 36 35 SH11550 11550 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4636 4653 31.108488 82.065138 56.586813 1.752715235 0.11921 36 36 SH18613 18613 YNL069C_14_494998_493953_INTRON_29_477 intron 30.674536 118.803478 30.674536 89.128942 59.901739 1.777439431 -0.027327 36 37 SH13820 13820 MT COB Cytbi2 30.272512 123.949035 30.272512 94.676523 62.4745175 1.795702911 -0.138393 36 38 SH6910 6910 snR58 5' 30.081434 92.012743 61.0470885 1.785664956 -0.102719 36 39 SH1494 1494 Leu3 5' flank 27.934579 94.986386 61.4604825 1.788595965 -0.251023 36 40 SH1436 1436 Leu2 5' flank 32.744556 97.425428 65.084992 1.813480856 -0.115006 36 41 SH6125 6125 snR39B 5' 31.188569 101.540031 66.3643 1.821934518 -0.240619 36 42 SH973 973 Gly1 3' flank 27.418984 74.347795 50.8833895 1.706576033 -0.003763 36 43 SH5055 5055 snR10 3' 28.05592 81.224458 54.640189 1.737512193 -0.048314 36 44 SH8707 8707 LSR1 / U2 RNA U2 176 190 33.177454 88.888937 61.0331955 1.785566109 0.081827 36 45 SH19694 19694 Negative Control 33.297005 97.43127 65.3641375 1.815339535 -0.100828 36 46 SH14991 14991 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.385619 98.904839 28.385619 71.51922 49.9524195 1.698556529 0.10018 36 47 SH12805 12805 MT COX1 COX1ai1 25.512472 89.694242 25.512472 65.18177 45.347121 1.65654972 -0.013724 36 48 SH9239 9239 snR6 / U6 RNA U6 66 78 34.129689 89.400011 61.76485 1.790741391 0.094975 36 49 SH17764 17764 YKL157W_11_154993_158183_INTRON_282_664 intron/exon 31.415952 128.329481 31.415952 97.913529 64.6647405 1.810667539 -0.160558 36 50 SH14062 14062 MT COB Cytbi4 26.99867 93.213032 26.99867 67.214362 47.106516 1.673080985 0.063277 36 51 SH16551 16551 YER133W_5_432491_433954_INTRON_178_702 intron 26.869792 111.910551 26.869792 86.040759 56.4552755 1.751704531 -0.187379 36 52 SH5615 5615 snR34 5' - 12 -4 12 32.885838 76.17978 54.532809 1.736657869 0.308696 36 53 SH18188 18188 YML024W_13_225889_226697_INTRON_4_401 intron 98.306117 241.292907 98.306117 143.98679 121.1464535 2.083310705 0.184587 36 54 SH11710 11710 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5436 5449 2931.048824 1531.837309 2231.443067 3.348585811 0.676124 36 55 SH20449 20449 YGL103W spliced 39.969971 101.459725 70.714848 1.849510612 -0.031482 36 56 SH19906 19906 YAL001C spliced 31.021301 93.537791 62.279546 1.794345438 -0.086971 36 57 SH15962 15962 YDL130W_4_229906_230527_INTRON_115_415 intron 25.3839 83.37866 25.3839 58.99476 42.18933 1.625202628 0.078182 36 58 SH8349 8349 snoRNA cluster4 snR53/3' 25.514044 99.147334 25.514044 74.63329 50.073667 1.699609397 -0.146112 36 59 SH11901 11901 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6391 6406 57.365437 96.100037 76.732737 1.884980689 0.390602 36 60 SH1493 1493 Leu3 5' flank 29.877687 88.662076 59.2698815 1.772834059 -0.054431 36 61 SH1376 1376 Leu1 5' flank 26.18251 79.30064 52.741575 1.722153095 -0.154527 36 62 SH14333 14333 MT VAR1 includes 5’ processing site VAR1 26.624855 93.619461 26.624855 67.994606 47.3097305 1.674950474 0.025352 36 63 SH19688 19688 Negative Control 28.633879 84.418802 56.5263405 1.75225087 -0.048515 36 64 SH19605 19605 RNA14 1.1 34.90397 88.182429 61.5431995 1.789180071 0.141995 36 65 SH9268 9268 RUF1 5' 34.998577 91.857146 63.4278615 1.802280069 0.061403 36 66 SH13625 13625 MT ATP6 ATP6 26.298986 93.696494 26.298986 68.397508 47.348247 1.675303905 -0.004034 36 67 SH15025 15025 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.361145 118.522853 28.361145 91.161708 59.7614265 1.776420956 -0.167161 36 68 SH10722 10722 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 496 516 28.164601 88.58412 58.3743605 1.766222136 -0.132098 36 69 SH21853 21853 copy of SH17603 28.541007 71.263189 49.902098 1.698118805 0.114135 36 70 SH5610 5610 snR34 5' 27.02886 78.473939 52.7513995 1.722233986 -0.084092 36 71 SH2106 2106 Met1 5' flank 27.49489 75.320312 51.407601 1.711027337 -0.01091 36 72 SH6170 6170 snR40 5' 27.276154 78.084009 52.6800815 1.721646438 -0.061944 36 73 SH781 781 Glu1 5' flank 28.935707 72.8958 50.9157535 1.706852175 0.11818 36 74 SH17026 17026 YGR148C_7_788173_787307_INTRON_1_392 3' exon 37.629961 136.605429 37.629961 99.975468 68.8027145 1.837605573 -0.05072 36 75 SH792 792 Glu1 5' flank 30.803085 92.596465 61.699775 1.79028358 -0.080773 36 76 SH9328 9328 RUF1 RUF1 216 232 33.416275 100.226025 66.82115 1.824913946 -0.1552 36 77 SH3618 3618 Val1 3' flank 26.720887 66.35052 46.5357035 1.667786284 0.055773 36 78 SH19871 19871 Negative Control 31.47395 99.55852 65.516235 1.816348932 -0.192814 36 79 SH1061 1061 Gly3 tRNA 41 53 61.631659 121.377945 91.504802 1.961443886 0.004375 36 80 SH14543 14543 MT 21S rRNA 21S rRNA3 28.18253 94.870661 28.18253 67.688131 47.9353305 1.680655726 0.139182 36 81 SH21081 21081 YMR292W spliced 176.996609 212.912472 194.9545405 2.289933354 0.211507 36 82 SH5283 5283 snR30 snR30 266 282 29.011443 76.665066 52.8382545 1.722948462 0.072629 36 83 SH4829 4829 snR8 5' 31.185127 80.941151 56.063139 1.74867741 0.143837 36 84 SH18687 18687 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.09461 104.718891 28.09461 77.624281 52.8594455 1.723122603 -0.000326 36 85 SH6960 6960 snR58 3' 27.188169 76.522078 51.8551235 1.714791673 -0.047801 36 86 SH3046 3046 Ser3 5' flank 26.335614 78.947654 52.641634 1.721329361 -0.139074 36 87 SH13880 13880 MT COB intronic 28.332881 102.469154 28.332881 75.136273 51.734577 1.713780902 0.048202 36 88 SH8208 8208 snoRNA cluster 3; snR51 26.561614 96.218484 26.561614 70.65687 48.609242 1.686718849 -0.016083 36 89 SH12540 12540 MT_ORF6 + ORF7 (hypothetical) ORF6/7 26.963304 107.221659 26.963304 81.258355 54.1108295 1.733284192 -0.123577 36 90 SH4968 4968 snR9 3' 33.708394 94.560824 64.134609 1.807092451 -0.029608 36 91 SH19965 19965 YBL059W spliced 28.790755 95.051076 61.9209155 1.791837369 -0.211671 36 92 SH8733 8733 LSR1 / U2 RNA U2 306 325 28.561319 69.319507 48.940413 1.68966763 0.142041 36 93 SH3693 3693 Val3 5' flank 29.397429 63.594528 46.4959785 1.667415392 0.280323 36 94 SH6142 6142 snR39B snR39B 51 67 25.616379 65.630785 45.623582 1.65918938 -0.013103 36 95 SH2655 2655 Pro4 5' flank 36.035248 128.192079 82.1136635 1.914415429 -0.595826 36 96 SH9321 9321 RUF1 RUF1 181 200 29.337292 139.426365 84.3818285 1.926248932 -0.941594 36 97 SH20840 20840 YLL050C spliced 30.425685 112.162864 71.2942745 1.853054654 -0.463834 36 98 SH18570 18570 YNL012W_14_609682_611661_INTRON_106_189 intron 24.932834 107.828416 24.932834 83.895582 54.414208 1.735712312 -0.303069 36 99 SH13220 13220 MT COX1 COX1-ai4 26.605112 89.813066 26.605112 64.207954 45.406533 1.657118343 0.079958 36 100 SH5681 5681 snR34 snR34 326 342 32.035007 85.625388 58.8301975 1.769600306 0.092793 36 101 SH20990 20990 YML073C spliced 33.01798 91.599575 62.3087775 1.79454923 0.017313 36 102 SH8250 8250 snoRNA cluster4 5' 26.104365 99.661386 26.104365 74.557021 50.330693 1.70183291 -0.101081 36 103 SH7087 7087 snR63 5' 27.137553 73.862918 50.5002355 1.703293403 -0.017353 36 104 SH5238 5238 snR30 snR30 41 56 790.284332 1718.854719 1254.569526 3.098494734 -1.228794 37 2 SH10692 10692 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 346 363 51.197084 110.401302 80.799193 1.907407023 0.012609 37 3 SH5477 5477 snR32 snR32 46 63 32.373993 86.511213 59.442603 1.774097819 0.090959 37 4 SH7196 7196 snR64 snR64 46 63 37.365534 91.010531 64.1880325 1.807454064 0.13614 37 5 SH5202 5202 snR13 3' 28.495945 75.553167 52.024556 1.716208382 0.053475 37 6 SH12132 12132 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7546 7559 28.641577 87.035851 57.838714 1.762218628 -0.082345 37 7 SH10674 10674 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 256 276 28.575345 71.407628 49.9914865 1.698896051 0.114508 37 8 SH7010 7010 snR60 3' 25.965367 73.565104 49.7652355 1.696926064 -0.09851 37 9 SH17713 17713 YKL081W_11_282533_284097_INTRON_206_531 intron 47.975754 166.198091 47.975754 119.222337 83.5990455 1.922201319 -0.198574 37 10 SH16674 16674 YFR032C-A_6_223758_223245_INTRON_1_331 intron 28.991247 97.341498 28.991247 69.350251 49.170749 1.691706824 0.170388 37 11 SH9061 9061 snR14 / U4 RNA 5' 30.013375 94.657006 62.3351905 1.794733291 -0.149581 37 12 SH4853 4853 snR8 snR8 46 60 29.190275 90.931633 60.060954 1.778592226 -0.124685 37 13 SH10334 10334 RUF7 RUF7 281 298 47.971472 112.913588 80.44253 1.905485721 -0.09034 37 14 SH16355 16355 YDR500C_4_1450856_1450201_INTRON_8_396 intron 26.942952 89.853369 26.942952 63.910417 45.4266845 1.657311041 0.108264 37 15 SH1681 1681 Leu6 5' flank 27.712529 74.703966 51.2082475 1.709339913 0.012159 37 16 SH9565 9565 RUF3 RUF3 211 230 29.955131 63.465117 46.710124 1.66941102 0.31847 37 17 SH9438 9438 RUF2 RUF2 31 50 27.458103 134.248472 80.8532875 1.907697683 -0.918001 37 18 SH16682 16682 YGL030W_7_439087_439634_INTRON_4_233 intron 30.005869 117.712868 30.005869 88.706999 59.356434 1.773467802 -0.049485 37 19 SH20549 20549 YGR225W spliced 28.870781 72.342972 50.6068765 1.704209533 0.121569 37 20 SH1030 1030 Gly2 3' flank 27.455489 74.127851 50.79167 1.705792492 0.001642 37 21 SH16645 16645 YFR031C-A_6_221405_220494_INTRON_5_151 5' exon 32.651589 122.463969 32.651589 90.81238 61.7319845 1.790510238 0.025302 37 22 SH5410 5410 snR31 snR31 116 134 28.353748 86.901777 57.6277625 1.760631758 -0.096062 37 23 SH4990 4990 snR10 5' - 2 -19 2 28.690818 71.164095 49.9274565 1.698339442 0.125553 37 24 SH5108 5108 snR11 snR11 141 153 30.981839 81.463261 56.22255 1.749910539 0.125137 37 25 SH21754 21754 copy of SH13179 28.053747 82.143599 55.098673 1.741141139 -0.059726 37 26 SH9318 9318 RUF1 RUF1 166 183 32.208624 72.494522 52.351573 1.718929735 0.325611 37 27 SH419 419 Asp1 5' flank 31.889714 87.239226 59.56447 1.774987282 0.057823 37 28 SH9521 9521 RUF3 5' - 8 -9 8 31.796474 101.355058 66.575766 1.823316172 -0.220417 37 29 SH2567 2567 Pro2 tRNA 71 83 198.977033 268.691552 233.8342925 2.368908202 -0.03158 37 30 SH10398 10398 RUF8 5' 33.661138 97.594115 65.6276265 1.817086698 -0.094923 37 31 SH3100 3100 Ser4 5' flank 28.005358 81.314246 54.659802 1.737668054 -0.052819 37 32 SH7978 7978 snoRNA cluster 2 snR57 31.688813 102.887062 31.688813 72.198249 51.943531 1.715531469 0.299054 37 33 SH16842 16842 YGL178W_7_167356_170575_INTRON_4_643 intron 34.10183 127.183121 34.10183 94.081291 64.0915605 1.806800846 -0.009365 37 34 SH10038 10038 RUF6 RUF6 36 53 29.409311 83.102142 56.2557265 1.750166738 0.017571 37 35 SH17323 17323 YIL004C_9_348502_347943_INTRON_12_142 intron 26.945993 101.363958 26.945993 75.417965 51.181979 1.709117074 -0.050988 37 36 SH1207 1207 Ile1 5' flank - tRNA11 11 31.039899 84.857986 57.9489425 1.763045515 0.064485 37 37 SH6182 6182 snR40 5' 28.230403 92.274647 60.252525 1.779975252 -0.192117 37 38 SH20616 20616 YHR097C spliced 30.151888 80.837292 55.49459 1.744250647 0.092221 37 39 SH8120 8120 snoRNA cluster 3; snR41 27.939796 88.814315 27.939796 61.874519 44.9071575 1.652315566 0.20907 37 40 SH19478 19478 ADH1 32.745873 82.550489 57.648181 1.760785608 0.178743 37 41 SH4962 4962 snR9 3' 28.897294 77.164501 53.0308975 1.724528977 0.058699 37 42 SH8961 8961 snR17a / U3a U3a 91 108 29.725551 72.269985 50.997768 1.707551169 0.177554 37 43 SH14306 14306 MT VAR1 includes 5’ processing site VAR1 28.03286 101.402607 28.03286 74.369747 51.2013035 1.709281018 0.038411 37 44 SH16909 16909 YGL232W_7_62074_63001_INTRON_58_115 intron/exon 25.861227 91.878746 25.861227 67.017519 46.439373 1.666886347 -0.016571 37 45 SH832 832 Glu2 5' flank 28.17929 88.461452 58.320371 1.765820278 -0.129257 37 46 SH8102 8102 snoRNA cluster 3; 5' 54.266371 163.638598 54.266371 110.372227 82.319299 1.915501663 0.065369 37 47 SH7771 7771 snoRNA cluster1 snR76/intergenic 27.554585 91.997711 27.554585 65.443126 46.4988555 1.667442264 0.128154 37 48 SH5271 5271 snR30 snR30 206 220 33.813231 88.911022 61.3621265 1.787900402 0.09815 37 49 SH12375 12375 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.630268 98.495543 28.630268 70.865275 49.7477715 1.696773631 0.125522 37 50 SH14521 14521 MT 21S rRNA 21S rRNA3 34.211817 126.183701 34.211817 92.971884 63.5918505 1.803401463 0.017475 37 51 SH18545 18545 YMR230W_13_732413_733140_INTRON_53_462 intron 26.001232 89.410469 26.001232 64.409237 45.2052345 1.655188726 0.033862 37 52 SH20155 20155 YDL125C spliced 29.45774 91.422033 60.4398865 1.78132364 -0.120798 37 53 SH10731 10731 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 541 554 30.569988 87.865275 59.2176315 1.772451033 -0.009807 37 54 SH5998 5998 snR37 5' 28.30118 76.534314 52.417747 1.71947835 0.027635 37 55 SH13373 13373 MT COX1 intronic 26.837393 115.004123 26.837393 89.16673 58.0020615 1.763443429 -0.225383 37 56 SH20432 20432 YGL076C spliced 27.57255 88.455181 58.0138655 1.763531804 -0.166442 37 57 SH12321 12321 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.67123 90.97366 25.67123 66.30243 45.98683 1.662633473 -0.019452 37 58 SH7854 7854 snoRNA cluster1 intergenic 45.679621 148.43806 45.679621 103.758439 74.71903 1.873431225 0.036349 37 59 SH16379 16379 YER007C-A_5_166884_166236_INTRON_12_114 5' exon 59.806163 169.585874 59.806163 110.779711 85.292937 1.930913069 0.150468 37 60 SH14468 14468 MT 21S rRNA 21S rRNA3 25.833446 92.867427 25.833446 68.033981 46.9337135 1.671484918 -0.033316 37 61 SH6331 6331 snR42 3' 37.54136 88.109205 62.8252825 1.79813445 0.205943 37 62 SH15570 15570 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.855084 108.757913 29.855084 79.902829 54.8789565 1.739405845 0.085223 37 63 SH14047 14047 MT COB Cytbi4 26.339115 109.225755 26.339115 83.88664 55.1128775 1.741253087 -0.199579 37 64 SH20465 20465 YGL183C spliced 45.265087 108.486232 76.8756595 1.885788855 -0.061841 37 65 SH19125 19125 YPL075W_16_412249_415357_INTRON_9_759 5' exon 26.091711 93.738211 26.091711 68.6465 47.3691055 1.675495184 -0.022759 37 66 SH8600 8600 snR19 / U1 RNA U1 496 515 28.338044 75.729677 52.0338605 1.716286048 0.040669 37 67 SH5128 5128 snR11 snR11 241 257 30.164185 87.081461 58.622823 1.768066728 -0.01383 37 68 SH12441 12441 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 51.176927 154.020538 51.176927 103.843611 77.510269 1.889359244 0.134256 37 69 SH20748 20748 YJL205C-A spliced 28.204453 69.327962 48.7662075 1.688118982 0.11771 37 70 SH10588 10588 RUF8 RUF8 866 882 29.353828 78.160048 53.756938 1.730434523 0.075399 37 71 SH18563 18563 YMR292W_13_854795_855293_INTRON_23_104 3' exon 30.305023 113.746933 30.305023 84.44191 57.3734665 1.758711091 0.04002 37 72 SH8843 8843 LSR1 / U2 RNA U2 856 868 710.759285 679.163464 694.9613745 2.841960667 0.094215 37 73 SH10504 10504 RUF8 RUF8 446 462 29.801233 86.466614 58.1339235 1.764429635 -0.019071 37 74 SH10310 10310 RUF7 RUF7 161 177 29.0848 86.795609 57.9402045 1.762980024 -0.057515 37 75 SH18630 18630 YNL096C_14_444312_443395_INTRON_145_489 intron 28.62213 101.042295 28.62213 73.420165 51.0211475 1.707750222 0.090473 37 76 SH16940 16940 YGR027C_7_534779_534126_INTRON_1_312 intron 28.429624 94.200507 28.429624 66.770883 47.6002535 1.677609266 0.169086 37 77 SH3421 3421 Trp1 5' flank 28.399136 88.865374 58.632255 1.768136597 -0.125903 37 78 SH13841 13841 MT COB Cytbi2 26.337261 100.488533 26.337261 75.151272 50.7442665 1.705386979 -0.091593 37 79 SH5008 5008 snR10 snR10 71 87 33.852858 93.980258 63.916558 1.80561338 -0.013446 37 80 SH2948 2948 Ser1 5' flank 30.115189 85.549059 57.832124 1.762169143 0.011459 37 81 SH9961 9961 RUF5-1 RUF5-1 611 630 28.439485 81.936953 55.188219 1.741846379 -0.031473 37 82 SH20239 20239 YDR305C spliced 28.659207 89.392113 59.02566 1.771040852 -0.122844 37 83 SH14205 14205 MT COB 3' 28.221793 108.259778 28.221793 81.037985 54.629889 1.737430318 -0.034906 37 84 SH9844 9844 RUF5-1 RUF5-1 26 47 29.626765 93.066151 61.346458 1.787789493 -0.140713 37 85 SH12478 12478 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 597.240229 1134.683322 597.240229 538.443093 567.841661 2.754227252 0.238165 37 86 SH19335 19335 YPL241C_16_96258_95372_INTRON_26_105 5' exon 27.693303 101.71028 27.693303 75.016977 51.35514 1.710583917 0.006773 37 87 SH16853 16853 YGL183C_7_157071_156547_INTRON_4_86 intron 45.084647 153.129463 45.084647 109.044816 77.0647315 1.88685567 -0.075681 37 88 SH18990 18990 YOR096W_15_505793_506766_INTRON_145_545 3' exon 27.68779 104.825404 27.68779 78.137614 52.912702 1.723559939 -0.034409 37 89 SH18089 18089 YLR367W_12_855877_857316_INTRON_698_1180 5' exon 25.815351 104.523152 25.815351 79.707801 52.761576 1.72231776 -0.186624 37 90 SH18851 18851 YNR053C_14_723108_721117_INTRON_811_1341 5' exon 25.667967 96.63652 25.667967 71.968553 48.81826 1.688582296 -0.099641 37 91 SH14357 14357 MT ORF9 and ORF10 (hypothetical) ORF9 27.628971 98.072935 27.628971 71.443964 49.5364675 1.694925033 0.04916 37 92 SH9359 9359 RUF1 RUF1 371 387 27.582743 75.720912 51.6518275 1.713085692 -0.010115 37 93 SH187 187 Arg2 51-65 51 65 33.977288 88.299871 61.1385795 1.786315344 0.116293 37 94 SH5224 5224 snR30 5' 26.8587 65.703985 46.2813425 1.665405948 0.075076 37 95 SH2707 2707 Pro5 5' flank 37.112367 102.040207 69.576287 1.842461249 -0.10428 37 96 SH7260 7260 snR65 snR65 76 95 24.552146 66.708923 45.6305345 1.659255556 -0.108975 37 97 SH5467 5467 snR32 5' - 13 -4 13 31.304777 81.939322 56.6220495 1.752985585 0.130002 37 98 SH1799 1799 Leu8 tRNA 21 37 29.343606 75.873306 52.608456 1.721055556 0.104473 37 99 SH7940 7940 snoRNA cluster1 3' 26.959812 87.952223 26.959812 61.992411 44.4761115 1.64812681 0.140398 37 100 SH2800 2800 Pro6 91-102 + 3' flank 91 34.746378 90.892424 62.819401 1.798093791 0.076661 37 101 SH18322 18322 YML085C_13_99400_97941_INTRON_26_141 intron 27.510827 110.667383 27.510827 84.156556 55.8336915 1.746896343 -0.120787 37 102 SH1241 1241 Ile2 5' flank 28.574533 90.923815 59.749174 1.776331906 -0.153087 37 103 SH515 515 Asp2 3' flank 29.723849 88.628164 59.1760065 1.772145653 -0.060748 37 104 SH1248 1248 Ile2 5' flank 270.003811 562.995049 416.49943 2.619614411 -0.848886 38 2 SH4218 4218 telomerase RNA telomerase 126 138 36.080465 105.634656 70.8575605 1.850386196 -0.198889 38 3 SH1127 1127 Gly4 3' flank 28.289232 77.84175 53.065491 1.724812187 0.00988 38 4 SH10005 10005 RUF5-1 3' 28.791178 78.357988 53.574583 1.728958799 0.0364 38 5 SH16625 16625 YFL039C_6_54695_53260_INTRON_11_318 intron 27.98162 111.700491 27.98162 84.718871 56.3502455 1.750895812 -0.095484 38 6 SH10728 10728 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 526 543 31.624361 77.523139 54.57375 1.736983797 0.223971 38 7 SH21886 21886 copy of SH18601 26.920999 79.278304 53.0996515 1.725091671 -0.101836 38 8 SH16923 16923 YGL251C_7_31636_27921_INTRON_59_210 3' exon 28.91895 115.323329 28.91895 87.404379 58.1616645 1.764636827 -0.075982 38 9 SH13823 13823 MT COB Cytbi2 26.498301 94.810489 26.498301 69.312188 47.9052445 1.680383061 -0.002241 38 10 SH21102 21102 YNL050C spliced 24.320798 71.864601 48.0926995 1.682079155 -0.202078 38 11 SH18272 18272 YML056C_13_164176_162194_INTRON_461_868 intron 26.230759 101.905582 26.230759 76.674823 51.452791 1.711408938 -0.118656 38 12 SH9706 9706 RUF4 RUF4 306 318 29.64485 78.230941 53.9378955 1.731893998 0.09308 38 13 SH1748 1748 Leu7 tRNA 36 51 37.576504 95.463304 66.519904 1.822951614 0.043368 38 14 SH14606 14606 MT 21S rRNA Sce1 endonuc 31.567702 149.137156 31.567702 118.569454 75.068578 1.875458189 -0.547083 38 15 SH157 157 Arg2 5' flank 27.807989 73.888308 50.8481485 1.706275144 0.029316 38 16 SH9603 9603 RUF3 RUF3 401 417 71.208425 108.416812 89.8126185 1.953337358 0.361495 38 17 SH4121 4121 SRP RNA SRP RNA 496 508 46.302858 103.991853 75.1473555 1.875913702 0.043406 38 18 SH17682 17682 YKL006W_11_431544_432358_INTRON_130_527 intron 33.600169 127.68861 33.600169 95.088441 64.344305 1.808510114 -0.043655 38 19 SH16189 16189 YDR367W_4_1212837_1213603_INTRON_31_131 3' exon 28.523871 111.848066 28.523871 84.324195 56.424033 1.751464125 -0.054645 38 20 SH13810 13810 MT COB Cytbi2 27.499613 101.103513 27.499613 74.6039 51.0517565 1.708010689 -0.001408 38 21 SH3745 3745 Val4 5' flank 32.867843 102.072614 67.4702285 1.829112181 -0.206417 38 22 SH16572 16572 YER133W_5_432491_433954_INTRON_178_702 3' exon 28.394283 112.782148 28.394283 85.387865 56.891074 1.755044133 -0.075775 38 23 SH800 800 Glu1 tRNA 16 30 574.744763 456.884887 515.814825 2.71249382 0.451985 38 24 SH9144 9144 snR7 U5 RNA 5' - 7 -9 7 28.467638 88.977009 58.7223235 1.768803231 -0.12462 38 25 SH5984 5984 snR36 3' 28.089091 70.007938 49.0485145 1.690625859 0.100451 38 26 SH5125 5125 snR11 snR11 226 245 30.130663 76.521622 53.3261425 1.726940169 0.145825 38 27 SH17235 17235 YHR077C_8_255757_252375_INTRON_7_119 3' exon 29.983007 128.05724 29.983007 99.074233 64.52862 1.809752377 -0.224392 38 28 SH8742 8742 LSR1 / U2 RNA U2 351 368 27.419564 75.107648 51.263606 1.709809152 -0.01348 38 29 SH14806 14806 "MT tRNAs (Lys, Arg1, Gly)" intergenic 26.863992 96.379093 26.863992 70.515101 48.6895465 1.687435729 0.007644 38 30 SH8670 8670 LSR1 / U2 RNA 5' - 5 -9 5 35.519781 93.046229 64.283005 1.80809617 0.04792 38 31 SH10744 10744 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 606 623 35.794331 94.89908 65.3467055 1.815223697 0.014462 38 32 SH2955 2955 Ser1 tRNA 6 18 522.898377 865.356662 694.1275195 2.841439263 -0.689057 38 33 SH3965 3965 RNase MRP RNaseMRP 241 259 28.589295 81.372343 54.980819 1.740211205 -0.014651 38 34 SH2752 2752 Pro5 3' flank 34.549656 90.261633 62.4056445 1.795223873 0.08595 38 35 SH13861 13861 MT COB Cytbi2 27.224213 100.144461 27.224213 73.920248 50.5722305 1.703912109 -0.011958 38 36 SH11842 11842 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6096 6109 20264.05576 10068.98599 15166.52088 4.180885967 0.215599 38 37 SH12830 12830 MT COX1 COX1ai1 33.061253 130.727752 33.061253 98.666499 65.863876 1.818647285 -0.132484 38 38 SH19437 19437 YPR187W_16_911252_911795_INTRON_21_96 5' exon 34.858542 131.89949 34.858542 98.040948 66.449745 1.822493319 -0.074322 38 39 SH11640 11640 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5086 5102 4784.746004 3734.589934 4259.667969 3.629375748 -0.095521 38 40 SH17675 17675 YKL006W_11_431544_432358_INTRON_130_527 5' exon 28.298233 114.247663 28.298233 86.94943 57.6238315 1.760602132 -0.100304 38 41 SH10438 10438 RUF8 RUF8 116 132 33.457866 91.929589 62.6937275 1.797224092 0.021322 38 42 SH8904 8904 LSR1 / U2 RNA 1161-1175 + 3' 1161 29.495719 77.600216 53.5479675 1.728742991 0.091682 38 43 SH21225 21225 YOR182C spliced 29.933207 84.498934 57.2160705 1.757518028 0.022453 38 44 SH20757 20757 YJR094W-A spliced 72.864097 146.042604 109.4533505 2.03922906 -0.167127 38 45 SH19553 19553 CBP1 2.2 32.217191 94.34812 63.2826555 1.801284695 -0.063708 38 46 SH7301 7301 snR66 5' - 17 -4 17 32.06547 95.134878 63.600174 1.803458304 -0.084606 38 47 SH3707 3707 Val3 tRNA 16 30 29.377557 82.10083 55.7391935 1.746160681 0.027672 38 48 SH8766 8766 LSR1 / U2 RNA U2 471 486 90.601843 114.038046 102.3199445 2.009960296 0.51504 38 49 SH21781 21781 copy of SH14231 27.943689 85.565405 56.754547 1.754000662 -0.107994 38 50 SH144 144 Arg1 3' flank 27.552665 87.928513 57.740589 1.76148121 -0.161822 38 51 SH4466 4466 telomerase RNA 3' 27.211729 86.761201 56.986465 1.755771718 -0.171902 38 52 SH3089 3089 Ser3 3' flank 30.801276 82.732329 56.7668025 1.754094432 0.0934 38 53 SH9121 9121 snR14 / U4 RNA 3' 47.430947 123.381878 85.4064125 1.93149048 -0.277097 38 54 SH10396 10396 RUF8 5' 35.028253 91.348531 63.188392 1.800637304 0.073403 38 55 SH8729 8729 LSR1 / U2 RNA U2 286 307 27.604755 70.083878 48.8443165 1.688814037 0.065915 38 56 SH14347 14347 MT VAR1 includes 5’ processing site 3' 32.877968 131.982538 32.877968 100.10457 66.491269 1.822764622 -0.166619 38 57 SH13235 13235 MT COX1 COX1-ai4 26.182577 105.802457 26.182577 80.61988 53.4012285 1.727551248 -0.171041 38 58 SH768 768 Gln4 3' flank 39.442563 96.560722 68.0016425 1.832519403 0.059668 38 59 SH6412 6412 snR45 5' 26.077121 71.696826 48.8869735 1.689193152 -0.065555 38 60 SH16312 16312 YDR471W_4_1401759_1402553_INTRON_32_415 5' exon 30.748873 126.596957 30.748873 96.848084 63.7984785 1.804810322 -0.156685 38 61 SH8175 8175 snoRNA cluster 3; snR70 28.463956 110.080034 28.463956 82.616078 55.540017 1.744606008 -0.038117 38 62 SH51 51 Ala1 3' flank 28.520512 81.29999 54.910251 1.739653429 -0.018299 38 63 SH7527 7527 snR79 5' 26.376622 75.380924 50.878773 1.706536629 -0.091645 38 64 SH20218 20218 YDR092W spliced 28.64213 95.71256 62.177345 1.793632174 -0.229327 38 65 SH13857 13857 MT COB Cytbi2 26.458892 95.566601 26.458892 70.107709 48.2833005 1.683796949 -0.016058 38 66 SH20029 20029 YBR181C spliced 37.717732 102.455713 70.0867225 1.845635751 -0.09935 38 67 SH19792 19792 Negative Control 30.476341 89.590072 60.0332065 1.778391541 -0.043986 38 68 SH9652 9652 RUF4 RUF4 36 53 25.768792 77.975769 51.8722805 1.714935342 -0.169019 38 69 SH11820 11820 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5986 6002 39.75392 85.949844 62.851882 1.798318286 0.305276 38 70 SH9518 9518 RUF3 5' 29.553964 83.610756 56.58236 1.752681058 0.020707 38 71 SH13689 13689 MT ORF 5 (hypothetical) ORF5 28.233049 105.419893 28.233049 78.186844 53.2099465 1.725992822 0.001705 38 72 SH15024 15024 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.439586 108.905482 28.439586 81.465896 54.952741 1.73998936 -0.025694 38 73 SH21251 21251 YPL075W spliced 25.462393 73.536438 49.4994155 1.694600071 -0.135807 38 74 SH1097 1097 Gly4 5' flank 29.2329 87.317959 58.2754295 1.765485483 -0.06 38 75 SH5921 5921 snR36 snR36 61 77 30.586725 98.053249 64.319987 1.808345948 -0.186318 38 76 SH10999 10999 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1881 1898 30166.44143 16363.23715 23264.83929 4.366700057 -0.032051 38 77 SH3295 3295 Thr2 3' flank 29.785553 72.646659 51.216106 1.709406556 0.176149 38 78 SH7949 7949 snoRNA cluster1 3' 41.450104 151.026462 41.450104 110.576358 76.013231 1.880889193 -0.17601 38 79 SH5344 5344 snR30 snR30 571 587 28.712932 77.038547 52.8757395 1.723256454 0.048275 38 80 SH5848 5848 snR35 snR35 426 445 27.211265 85.033222 56.1222435 1.749135024 -0.151792 38 81 SH21346 21346 YPR132W spliced 32.588744 94.815824 63.702284 1.804155004 -0.063949 38 82 SH8346 8346 snoRNA cluster4 snR53 28.115666 100.822966 28.115666 73.7073 50.911483 1.706815748 0.05286 38 83 SH16739 16739 YGL076C_7_365994_364333_INTRON_565_1032 intron 27.659903 103.964579 27.659903 77.304676 52.4822895 1.720012773 -0.025577 38 84 SH5061 5061 snR11 5' 38.054239 98.546739 68.300489 1.834423813 -0.011807 38 85 SH7950 7950 snoRNA cluster1 3' 34.473054 127.559808 34.473054 94.086754 64.279904 1.808075219 -0.000229 38 86 SH13471 13471 MT COX1 intronic 29.428834 115.028765 29.428834 86.599931 58.0143825 1.763535674 -0.038285 38 87 SH5543 5543 snR33 snR33 1 17 37.886703 89.80306 63.8448815 1.805126085 0.175102 38 88 SH1914 1914 Lys1 tRNA 26 45 37.946052 76.411644 57.178848 1.757235401 0.495553 38 89 SH19550 19550 CBP1 2.2 50.651085 240.464384 145.5577345 2.163035287 -1.460942 38 90 SH2318 2318 Phe3 5' flank 39.660052 118.097263 78.8786575 1.89695951 -0.347313 38 91 SH7561 7561 snR79 3' 41.802929 166.924012 104.3634705 2.018548513 -0.983326 38 92 SH17397 17397 YIL069C_9_232366_231550_INTRON_4_412 intron 35.612931 185.353787 35.612931 150.740856 93.1768935 1.969308227 -0.932043 38 93 SH1643 1643 Leu5 tRNA 81 97 2417.048086 3661.737276 3039.392681 3.482786813 -0.953284 38 94 SH11427 11427 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4021 4034 22585.20047 10393.82494 16489.5127 4.217207822 0.306937 38 95 SH7046 7046 snR62 snR62 21 41 36.473232 121.777807 79.1255195 1.898316574 -0.481356 38 96 SH17044 17044 YGR214W_7_920570_921783_INTRON_91_545 5' exon 32.558897 128.138737 32.558897 96.57984 64.5693685 1.810026539 -0.102165 38 97 SH21616 21616 copy of SH7317 28.908307 74.267321 51.587814 1.712547125 0.097732 38 98 SH15593 15593 YBR089C-A_2_426588_426148_INTRON_1_114 5' exon 33.543192 120.579314 33.543192 88.036122 60.789657 1.783829693 0.111378 38 99 SH20148 20148 YDL115C spliced 65.228682 123.026885 94.1277835 1.973717832 0.035156 38 100 SH1292 1292 Ile2 3' flank 24.329069 66.158858 45.2439635 1.655560643 -0.117622 38 101 SH19267 19267 YPL143W_16_282121_282969_INTRON_20_544 intron 27.302635 113.418859 27.302635 87.116224 57.2094295 1.757467617 -0.169706 38 102 SH2392 2392 Phe4 tRNA 11 25 65.029887 137.197597 101.113742 2.004810183 -0.171701 38 103 SH7906 7906 snoRNA cluster1 intergenic 453.786481 1431.683696 453.786481 978.897215 716.341848 2.855120323 -1.068746 38 104 SH8740 8740 LSR1 / U2 RNA U2 341 357 297.641894 625.128976 461.385435 2.664063881 -0.89307 39 2 SH10650 10650 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 136 149 215.99035 192.20304 204.096695 2.309835972 0.624495 39 3 SH6517 6517 snR46 snR46 76 93 28.877656 80.667352 54.772504 1.738562596 0.01297 39 4 SH19132 19132 YPL075W_16_412249_415357_INTRON_9_759 intron 29.292407 103.044498 29.292407 74.752091 52.022249 1.716189123 0.116088 39 5 SH10887 10887 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1321 1336 139.999445 165.752358 152.8759015 2.184339031 0.352486 39 6 SH18007 18007 YLR287C-A_12_713158_712537_INTRON_4_433 intron 29.282278 110.036637 29.282278 81.754359 55.5183185 1.744436304 0.025786 39 7 SH4265 4265 telomerase RNA telomerase 361 378 29.113128 72.734843 50.9239855 1.706922386 0.131911 39 8 SH436 436 Asp1 tRNA 1 18 31.344291 75.585813 53.465052 1.728069994 0.232549 39 9 SH11801 11801 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5891 5908 25449.71177 12891.2774 19170.49459 4.282633318 0.122572 39 10 SH14009 14009 MT COB intronic 31.651531 106.61403 31.651531 75.962499 53.807015 1.7308389 0.245951 39 11 SH10075 10075 RUF6 RUF6 221 235 28.849835 73.907492 51.3786635 1.710782803 0.09878 39 12 SH6039 6039 snR37 snR37 111 127 27.974615 63.505778 45.7401965 1.660298026 0.186124 39 13 SH16455 16455 YER074W-A_0_5_307649_INTRON_95_196 intron 27.559338 91.057254 27.559338 64.497916 46.028627 1.66302802 0.142446 39 14 SH18861 18861 YNR053C_14_723108_721117_INTRON_811_1341 intron 32.28696 92.400047 32.28696 61.113087 46.7000235 1.669317099 0.499072 39 15 SH13692 13692 MT ORF 5 (hypothetical) ORF5 / 3' 25.919032 89.059453 25.919032 64.140421 45.0297265 1.653499309 0.032194 39 16 SH3115 3115 Ser4 5' flank 27.430935 80.253169 53.842052 1.731121603 -0.078717 39 17 SH12552 12552 MT_15S 5' 24.493844 87.044415 24.493844 63.550571 44.0222075 1.643671817 -0.064129 39 18 SH2480 2480 Phe5 3' flank 44.172559 102.323984 73.2482715 1.864797381 0.035832 39 19 SH10499 10499 RUF8 RUF8 421 442 26.161371 78.850793 52.506082 1.720209612 -0.15061 39 20 SH3299 3299 Thr2 3' flank 27.537973 72.946145 50.242059 1.701067429 0.022839 39 21 SH4684 4684 snR4 5' 28.228365 69.541118 48.8847415 1.689173323 0.116396 39 22 SH5154 5154 snR13 5' 33.308345 84.395719 58.852032 1.769761462 0.16734 39 23 SH952 952 Gly1 tRNA 11 28 30.806808 81.272334 56.039571 1.748494802 0.121184 39 24 SH1358 1358 Ile3 3' flank 28.033832 82.881169 55.4575005 1.743960292 -0.070014 39 25 SH17533 17533 YJL177W_10_90783_91654_INTRON_310_626 intron 30.116176 129.656005 30.116176 100.539829 65.3280025 1.815099379 -0.250423 39 26 SH5588 5588 snR33 3' 30.12513 72.025798 51.075464 1.708212321 0.206102 39 27 SH35 35 Ala1 tRNA + 3' flank 71 3' flank 30.232268 74.567358 52.399813 1.719329737 0.17807 39 28 SH17842 17842 YKR094C_11_618384_617630_INTRON_9_376 intron 27.579334 104.493903 27.579334 77.914569 52.7469515 1.722197365 -0.038942 39 29 SH1599 1599 Leu4 3' flank 31.450008 91.893416 61.671712 1.790086005 -0.041164 39 30 SH21594 21594 copy of SH6470 29.826902 77.477466 53.652184 1.729587405 0.114305 39 31 SH16715 16715 YGL031C_7_438393_437938_INTRON_1_456 intron 29.131488 127.129608 29.131488 98.99812 64.064804 1.806619502 -0.258865 39 32 SH21740 21740 copy of SH12550 26.448287 76.625284 51.5367855 1.712117327 -0.102131 39 33 SH10088 10088 RUF6 RUF6 286 303 27.935917 70.939581 49.437749 1.694058688 0.077235 39 34 SH1750 1750 Leu7 tRNA 46 58 73.12126 130.328505 101.7248825 2.007427197 0.044992 39 35 SH19583 19583 AEP2/ATP13 0.6 27.393335 85.337045 56.36519 1.751010975 -0.142798 39 36 SH1504 1504 Leu3 5' flank - tRNA9 9 31.744489 78.220237 54.982363 1.740223401 0.220529 39 37 SH12713 12713 MT ORF 8 (hypothetical) ORF8 26.716029 93.010126 26.716029 67.294097 47.005063 1.672144639 0.041872 39 38 SH10295 10295 RUF7 RUF7 86 105 29.697773 95.008565 62.353169 1.794858531 -0.169464 39 39 SH6976 6976 snR60 5' 32.803612 83.914337 58.3589745 1.766107652 0.155752 39 40 SH7016 7016 snR60 3' 53.114011 104.15447 78.6342405 1.895611696 0.161482 39 41 SH11185 11185 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2811 2828 28.907778 68.268978 48.588378 1.686532401 0.179915 39 42 SH20419 20419 YGL030W spliced 31.593941 95.21783 63.4058855 1.802129572 -0.099038 39 43 SH14961 14961 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 29.350473 123.9108 29.350473 95.560327 62.4554 1.795569994 -0.194167 39 44 SH15750 15750 YCR031C_3_178212_177492_INTRON_8_314 intron 29.16539 103.551012 29.16539 75.385622 52.275506 1.718298245 0.09945 39 45 SH10179 10179 RUF6 RUF6 741 757 28.994506 71.704635 50.3495705 1.70199577 0.1385 39 46 SH10899 10899 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1381 1398 31.314215 70.064517 50.689366 1.704916859 0.306684 39 47 SH11681 11681 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5291 5306 107.884996 128.88526 118.385128 2.073297148 0.48463 39 48 SH7304 7304 snR66 snR66 11 28 65.379734 125.49467 95.437202 1.979717698 -0.000134 39 49 SH9074 9074 snR14 / U4 RNA 5' - 3 -14 3 32.034456 77.858147 54.9463015 1.739938465 0.239876 39 50 SH1729 1729 Leu7 5' flank 46.951939 93.737911 70.344925 1.847232771 0.265895 39 51 SH8071 8071 snoRNA cluster 2 snR61 570.467809 1631.480252 570.467809 1062.012443 816.240126 2.911817941 -0.899441 39 52 SH20373 20373 YER179W spliced 31.093241 92.880368 61.9868045 1.792299248 -0.07296 39 53 SH8417 8417 snoRNA cluster 5 snR190 26.898276 94.301299 26.898276 68.403023 47.6506495 1.678068825 0.039281 39 54 SH11939 11939 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6581 6596 81.434353 129.086011 105.260182 2.022264117 0.1759 39 55 SH3933 3933 RNase MRP RNaseMRP 81 96 33.224835 80.765099 56.994967 1.755836507 0.232003 39 56 SH12986 12986 MT COX1 COX1ai2 27.002556 93.452283 27.002556 67.449727 47.2261415 1.674182464 0.0602 39 57 SH3400 3400 Thr4 3' flank 29.225091 73.410327 51.317709 1.71026726 0.129888 39 58 SH33 33 Ala1 tRNA 61 73 33.625806 90.878081 62.2519435 1.794152915 0.048963 39 59 SH18704 18704 YNL130C_14_381156_379555_INTRON_30_470 intron 26.843267 96.722856 26.843267 70.879589 48.861428 1.688966155 0.001211 39 60 SH7093 7093 snR63 5' 27.900967 84.676798 56.2888825 1.750422627 -0.100425 39 61 SH12215 12215 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.807324 127.01055 37.807324 90.203226 64.005275 1.806215768 0.16428 39 62 SH21507 21507 copy of SH2799 37.626313 89.307214 63.4667635 1.802546352 0.18045 39 63 SH6827 6827 snR52 snR52 41 60 28.726135 86.013446 57.3697905 1.758683264 -0.06119 39 64 SH19223 19223 YPL090C_16_378390_377286_INTRON_7_400 5' exon 218.22325 525.064973 218.22325 307.841723 263.0324865 2.42000939 -0.14058 39 65 SH9739 9739 RUF4 RUF4 471 488 29.196099 73.871669 51.533884 1.712092876 0.121745 39 66 SH13564 13564 MT COX1 Exon 6 26.952508 93.633916 26.952508 67.681408 47.316958 1.675016816 0.053337 39 67 SH17736 17736 YKL156W_11_158616_159214_INTRON_4_353 intron 29.068317 115.114713 29.068317 87.046396 58.0573565 1.763857257 -0.062738 39 68 SH17775 17775 YKL180W_11_109271_110131_INTRON_310_615 intron 28.825886 103.02615 28.825886 75.200264 52.013075 1.71611253 0.079854 39 69 SH349 349 Arg5 3' flank 68.641792 105.41777 87.029781 1.939667891 0.378136 39 70 SH10484 10484 RUF8 RUF8 346 365 28.716284 91.740056 60.22817 1.779799668 -0.160289 39 71 SH9293 9293 RUF1 RUF1 41 59 28.260306 77.746523 53.0034145 1.724303848 0.009178 39 72 SH1400 1400 Leu1 tRNA-intron/exon 71 87 102.206613 225.370014 163.7883135 2.214282911 -0.542826 39 73 SH5675 5675 snR34 snR34 296 313 29.458021 80.215843 54.836932 1.739073149 0.056081 39 74 SH18385 18385 YMR116C_13_500687_499455_INTRON_538_810 intron 28.396445 112.119455 28.396445 84.72301 56.5597275 1.752507308 -0.067805 39 75 SH8570 8570 snR19 / U1 RNA U1 346 358 27.594117 75.165236 51.3796765 1.710791366 -0.001995 39 76 SH2362 2362 Phe3 3' flank 41.306892 100.920303 71.1135975 1.851952649 0.006583 39 77 SH17838 17838 YKR094C_11_618384_617630_INTRON_9_376 intron 31.48746 114.676465 31.48746 84.189005 57.8382325 1.762215013 0.09589 39 78 SH20597 20597 YHR041C spliced 27.674033 84.491946 56.0829895 1.748831156 -0.113625 39 79 SH13864 13864 MT COB intronic 26.057225 90.959264 26.057225 65.902039 45.979632 1.662565491 0.014599 39 80 SH17581 17581 YJL191W_10_73786_74610_INTRON_11_418 intron 28.826286 93.693916 28.826286 65.86763 47.346958 1.675292081 0.208839 39 81 SH8103 8103 snoRNA cluster 3; 5' 31.767072 125.532822 31.767072 94.76575 63.266411 1.801173198 -0.084703 39 82 SH10055 10055 RUF6 RUF6 121 138 27.61615 82.392181 55.0041655 1.74039558 -0.092373 39 83 SH18404 18404 YMR125W_13_517538_520445_INTRON_26_347 intron 29.756143 100.355964 29.756143 71.599821 50.677982 1.704819313 0.18882 39 84 SH19410 19410 YPR098C_16_729525_728944_INTRON_48_143 intron 28.881187 113.372776 28.881187 85.491589 57.186388 1.757292667 -0.044954 39 85 SH20608 20608 YHR077C spliced 39.44569 108.892367 74.1690285 1.87022259 -0.187365 39 86 SH9650 9650 RUF4 RUF4 26 42 28.07297 74.266001 51.1694855 1.70901105 0.042502 39 87 SH15580 15580 YBR084C-A_2_415219_414144_INTRON_3_508 intron 25.82769 101.8935 25.82769 77.06581 51.44675 1.711357945 -0.153359 39 88 SH11399 11399 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3881 3897 53.973646 93.502414 73.73803 1.867691531 0.390762 39 89 SH8281 8281 snoRNA cluster4 intergenic 27.27822 104.615095 27.27822 78.336875 52.8075475 1.722695998 -0.065038 39 90 SH3825 3825 RNaseP RNaseP 91 106 39.856515 88.743386 64.2999505 1.808210639 0.242392 39 91 SH19547 19547 CBP1 2.2 26.947886 88.081925 57.5149055 1.759780411 -0.205386 39 92 SH2111 2111 Met1 5' flank 25.107118 68.71585 46.911484 1.671279172 -0.097318 39 93 SH6974 6974 snR60 5' 29.298695 65.150974 47.2248345 1.674170445 0.250642 39 94 SH8364 8364 snoRNA cluster4 3' 32.943983 146.471969 32.943983 114.527986 73.7359845 1.867679483 -0.440441 39 95 SH3938 3938 RNase MRP RNaseMRP 106 122 102.291857 186.105833 144.198845 2.158961782 -0.215707 39 96 SH2150 2150 Met1 3' flank 30.571687 95.383098 62.9773925 1.799184675 -0.136733 39 97 SH17659 17659 YKL002W_11_437416_438182_INTRON_61_128 intron 28.865219 110.178146 28.865219 82.312927 55.589073 1.744989432 -0.00806 39 98 SH17845 17845 YKR094C_11_618384_617630_INTRON_9_376 intron 26.896549 92.491642 26.896549 66.595093 46.745821 1.669742792 0.064861 39 99 SH2263 2263 Phe2 5' flank 26.772787 71.293937 49.033362 1.690491672 -0.009446 39 100 SH19234 19234 YPL090C_16_378390_377286_INTRON_7_400 intron 36.756911 120.822612 36.756911 85.065701 60.911306 1.784697911 0.259278 39 101 SH12763 12763 MT COX1 COX1ai1 26.435911 99.353206 26.435911 73.917295 50.176603 1.700501256 -0.068506 39 102 SH11778 11778 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5776 5793 52.51225 83.513885 68.0130675 1.832592363 0.596071 39 103 SH18294 18294 YML073C_13_124172_123227_INTRON_16_430 intron 339.859402 1182.523441 339.859402 843.664039 591.7617205 2.772146868 -1.204932 39 104 SH7200 7200 snR64 snR64 66 83 192.442038 459.107972 325.775005 2.51291776 -0.949529 40 2 SH8987 8987 snR17a / U3a U3a 221 237 31.125603 89.783828 60.4547155 1.781430182 -0.019114 40 3 SH21585 21585 copy of SH6042 27.93138 86.270643 57.1010115 1.756643802 -0.117043 40 4 SH19953 19953 YBL050W spliced 132.306831 173.707011 153.006921 2.184711076 0.205786 40 5 SH5056 5056 snR10 3' 26.807254 77.092903 51.9500785 1.715586208 -0.082007 40 6 SH15868 15868 YDL079C_4_314747_312950_INTRON_413_704 intron 31.081981 104.832985 31.081981 74.751004 52.9164925 1.72359105 0.227834 40 7 SH873 873 Glu2 3' flank 30.884731 96.677167 63.780949 1.804690977 -0.14933 40 8 SH908 908 Glu3 tRNA 51 63 33.296609 99.338411 66.31751 1.821628212 -0.140203 40 9 SH14894 14894 MT tRNA Ile 5' 29.102318 111.692846 29.102318 83.590528 56.346423 1.750866351 -0.008068 40 10 SH12733 12733 MT COX1 Exon1 26.978297 110.155389 26.978297 84.177092 55.5776945 1.744900527 -0.157861 40 11 SH16173 16173 YDR305C_4_1073479_1072737_INTRON_88_176 5' exon 28.793739 130.413127 28.793739 102.619388 65.7065635 1.817608754 -0.330378 40 12 SH8100 8100 snoRNA cluster 3; 5' 37.00951 131.933254 37.00951 95.923744 66.466627 1.82260364 0.020934 40 13 SH10096 10096 RUF6 RUF6 326 342 27.93349 116.573704 72.253597 1.858859472 -0.615206 40 14 SH12541 12541 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.196329 110.767777 28.196329 83.571448 55.8838885 1.747286617 -0.067428 40 15 SH14379 14379 MT ORF9 and ORF10 (hypothetical) ORF10 28.05858 134.593392 28.05858 107.534812 67.796696 1.83120853 -0.447494 40 16 SH1095 1095 Gly4 5' flank 27.169718 79.398085 53.2839015 1.726596017 -0.08602 40 17 SH16770 16770 YGL103W_7_310965_311925_INTRON_50_560 intron 35.950451 130.469546 35.950451 95.519095 65.734773 1.817795168 0.004957 40 18 SH10089 10089 RUF6 RUF6 291 307 25.926289 69.170513 47.548401 1.677135917 -0.042305 40 19 SH17562 17562 YJL189W_10_75932_76473_INTRON_7_392 intron 35.254052 125.679421 35.254052 91.425369 63.3397105 1.801676074 0.077187 40 20 SH3685 3685 Val3 5' flank 29.922553 94.965036 62.4437945 1.795489286 -0.158663 40 21 SH7062 7062 snR62 3' 28.298531 72.318483 50.308507 1.701641429 0.083599 40 22 SH14801 14801 "MT tRNAs (Lys, Arg1, Gly)" intergenic 28.506016 107.62926 28.506016 80.123244 54.31463 1.734916825 -0.00466 40 23 SH17535 17535 YJL177W_10_90783_91654_INTRON_310_626 intron 118.277664 285.640334 118.277664 168.36267 143.320167 2.156307306 0.126111 40 24 SH2347 2347 Phe3 tRNA 61 75 1478.315764 1402.666408 1440.491086 3.158510575 -0.083976 40 25 SH20211 20211 YDR059C spliced 41.745122 106.640572 74.192847 1.870362037 -0.096421 40 26 SH19260 19260 YPL143W_16_282121_282969_INTRON_20_544 intron 27.575448 104.713242 27.575448 78.137794 52.856621 1.723099396 -0.042072 40 27 SH16422 16422 YER074W_5_306319_307192_INTRON_4_469 5' exon 27.837653 117.980857 27.837653 91.143204 59.4904285 1.774447097 -0.191783 40 28 SH123 123 Arg1 5' flank - tRNA8 5' flank 8 29.837374 75.120068 52.478721 1.719983242 0.145903 40 29 SH2343 2343 Phe3 tRNA-intron/exon 41 58 29.087321 77.59689 53.3421055 1.727070154 0.065454 40 30 SH13731 13731 MT COB Exon1 37.98501 144.625831 37.98501 107.640821 72.8129155 1.862208421 -0.195371 40 31 SH6265 6265 snR42 snR42 106 122 31.78869 69.849703 50.8191965 1.706027794 0.338094 40 32 SH13273 13273 MT COX1 Exon 5a 26.803024 97.956362 26.803024 72.153338 49.478181 1.694413725 -0.01877 40 33 SH20825 20825 YKR057W spliced 28.24983 74.764132 51.506981 1.711866095 0.047642 40 34 SH12669 12669 MT_15S 3' 35.21055 124.216673 35.21055 90.006123 62.6083365 1.796632165 0.107902 40 35 SH9776 9776 RUF4 RUF4 656 671 62.036 120.975931 91.5059655 1.961449408 0.017146 40 36 SH21019 21019 YMR033W spliced 32.092933 90.882484 61.4877085 1.788788308 0.003034 40 37 SH20058 20058 YBR255C-A spliced 29.559719 89.343566 59.4516425 1.774163858 -0.080596 40 38 SH16831 16831 YGL178W_7_167356_170575_INTRON_4_643 intron 26.859813 90.036613 26.859813 64.1768 45.5183065 1.658186096 0.09826 40 39 SH2740 2740 Pro5 tRNA 81 95 35.546345 91.298081 63.422213 1.802241392 0.087074 40 40 SH14449 14449 MT 21S rRNA 21S rRNA3 28.662809 113.098034 28.662809 85.435225 57.049017 1.756248166 -0.058595 40 41 SH10399 10399 RUF8 5' 30.208838 88.062417 59.1356275 1.77184921 -0.02918 40 42 SH18951 18951 YOL127W_15_80347_81189_INTRON_14_427 intron 29.296832 106.986824 29.296832 78.689992 53.993412 1.732340773 0.064971 40 43 SH1766 1766 Leu7 3' flank 29.12498 91.759957 60.4424685 1.781342193 -0.14171 40 44 SH1092 1092 Gly4 5' flank 40.338631 103.158185 71.748408 1.855812269 -0.058172 40 45 SH10896 10896 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1366 1381 143.136414 157.905984 150.521199 2.177597669 0.461141 40 46 SH2507 2507 Pro1 tRNA 26 38 28.419545 75.530083 51.974814 1.715792944 0.048723 40 47 SH16439 16439 YER074W_5_306319_307192_INTRON_4_469 intron 28.492691 127.539779 28.492691 100.047088 64.2698895 1.808007553 -0.304846 40 48 SH3524 3524 Tyr1 3' flank 26.153444 62.680705 44.4170745 1.647549951 0.072417 40 49 SH20430 20430 YGL033W spliced 27.949144 90.55866 59.253902 1.772716955 -0.17648 40 50 SH14216 14216 MT ATP9 ATP9 29.739605 111.888214 29.739605 83.148609 56.444107 1.751618606 0.038054 40 51 SH2399 2399 Phe4 tRNA-intron/exon 46 60 32.050757 86.923772 59.4872645 1.774423999 0.070169 40 52 SH5065 5065 snR11 5' 31.323992 89.926668 60.62533 1.782654116 -0.013069 40 53 SH2555 2555 Pro2 tRNA 11 28 30.622237 69.618926 50.1205815 1.700016101 0.270969 40 54 SH7787 7787 snoRNA cluster1 intergenic/snR75 31.274913 103.366866 31.274913 73.091953 52.183433 1.717532647 0.261965 40 55 SH7218 7218 snR64 3' 25.03788 80.583472 52.810676 1.722721727 -0.255999 40 56 SH13903 13903 MT COB Exon3 27.671047 114.865051 27.671047 88.194004 57.9325255 1.762922461 -0.156763 40 57 SH1825 1825 Leu8 3' flank 29.898051 87.240704 58.5693775 1.767670608 -0.028518 40 58 SH8280 8280 snoRNA cluster4 intergenic 29.782318 101.573944 29.782318 72.791626 51.286972 1.710007059 0.173948 40 59 SH17571 17571 YJL189W_10_75932_76473_INTRON_7_392 intron/exon 29.796254 101.958602 29.796254 73.162348 51.479301 1.711632641 0.169744 40 60 SH2496 2496 Pro1 5' flank 29.616629 86.190872 57.9037505 1.762706694 -0.022447 40 61 SH8510 8510 snR19 / U1 RNA U1 46 65 26.932464 86.009103 56.4707835 1.751823813 -0.182621 40 62 SH2419 2419 Phe4 3' flank 28.981038 76.754796 52.867917 1.7231922 0.069482 40 63 SH20133 20133 YDL083C spliced 35.947262 94.890225 65.4187435 1.815702198 0.018295 40 64 SH7747 7747 snoRNA cluster1 intergenic/snR76 26.9326 93.350355 26.9326 67.417755 47.1751775 1.673713543 0.055659 40 65 SH1496 1496 Leu3 5' flank 34.129654 97.014924 65.572289 1.816720344 -0.071021 40 66 SH5973 5973 snR36 snR36 321 338 27.333207 73.677876 50.5055415 1.703339032 -0.001112 40 67 SH16667 16667 YFR032C-A_6_223758_223245_INTRON_1_331 intron 29.6223 100.352519 29.6223 71.730219 50.6762595 1.704804551 0.178504 40 68 SH77 77 Ala2 21-33 21 33 27.07494 78.995316 53.035128 1.724563621 -0.087512 40 69 SH20510 20510 YGR029W spliced 34.046535 94.302647 64.174591 1.807363109 -0.015524 40 70 SH4188 4188 telomerase RNA 5' 27.533173 73.567512 50.5503425 1.703724102 0.014364 40 71 SH6168 6168 snR40 5' 27.831447 77.787521 52.809484 1.722711924 -0.020162 40 72 SH2382 2382 Phe4 5' flank 27.061489 84.000864 55.5311765 1.744536875 -0.149962 40 73 SH3163 3163 Ser5 5' flank 25.728481 67.511886 46.6201835 1.668573979 -0.033659 40 74 SH20161 20161 YDL130W spliced 33.31686 89.572624 61.444742 1.788484725 0.070455 40 75 SH19925 19925 YBL018C spliced 24.524588 72.863004 48.693796 1.687473632 -0.199248 40 76 SH7411 7411 snR69 5' 28.932628 75.329043 52.1308355 1.717094685 0.085105 40 77 SH2070 2070 Lys4 tRNA 16 30 33.777777 82.769647 58.273712 1.765472683 0.216168 40 78 SH2357 2357 Phe3 3' flank 27.715404 71.312391 49.5138975 1.694727113 0.056944 40 79 SH4157 4157 SRP RNA 3' 34.64667 87.256604 60.951637 1.784985374 0.157104 40 80 SH2906 2906 Pro8 tRNA 51 67 73.031151 140.402068 106.7166095 2.028232019 -0.093209 40 81 SH19375 19375 YPR043W_16_654161_654842_INTRON_3_405 intron 40.486132 128.48151 40.486132 88.995378 64.740755 1.81117776 0.249439 40 82 SH18459 18459 YMR143W_13_551927_552902_INTRON_25_568 intron 27.319468 103.031144 27.319468 76.711676 52.015572 1.716133379 -0.041202 40 83 SH17780 17780 YKL180W_11_109271_110131_INTRON_310_615 intron 27.458379 105.082944 27.458379 78.624565 53.041472 1.724615568 -0.056305 40 84 SH16974 16974 YGR034W_7_555923_556666_INTRON_20_496 intron 27.096336 97.15172 27.096336 71.055384 49.07586 1.690867919 0.016904 40 85 SH15979 15979 YDL136W_4_217600_218367_INTRON_4_408 intron 31.443893 116.944845 31.443893 86.500952 58.9724225 1.770648968 0.052127 40 86 SH21669 21669 copy of SH9619 27.002245 71.879642 49.4409435 1.69408675 -0.000862 40 87 SH11631 11631 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5041 5058 28.172023 88.063727 58.117875 1.764309727 -0.122631 40 88 SH8377 8377 snoRNA cluster 5 5' 26.654636 99.09993 26.654636 73.445294 50.049965 1.699403778 -0.046491 40 89 SH21937 21937 copy of SH19620 30.515183 93.49535 62.0052665 1.792428578 -0.108286 40 90 SH21150 21150 YNL246W spliced 25.552277 82.320054 53.9361655 1.731880068 -0.237849 40 91 SH18512 18512 YMR201C_13_667043_665844_INTRON_28_111 exon/intron 27.502164 112.251414 27.502164 85.74925 56.625707 1.753013637 -0.140152 40 92 SH1119 1119 Gly4 71-72 + 3' flank 71 25.347312 65.207064 45.277188 1.655879447 -0.026258 40 93 SH2546 2546 Pro2 5' flank 27.259285 74.036775 50.64803 1.704562558 -0.01099 40 94 SH18381 18381 YMR116C_13_500687_499455_INTRON_538_810 intron 29.99826 148.420664 29.99826 119.422404 74.710332 1.873380666 -0.603824 40 95 SH55 55 Ala2 5' flank 28.757744 103.227595 65.9926695 1.819495697 -0.343447 40 96 SH21045 21045 YMR142C spliced 33.311451 86.286937 59.799194 1.77669533 0.133181 40 97 SH4160 4160 SRP RNA 3' 30.277616 88.643276 59.460446 1.774228162 -0.036306 40 98 SH19217 19217 YPL081W_16_404945_406039_INTRON_8_508 intron 33.424761 126.389504 33.424761 93.964743 63.694752 1.804103651 -0.023989 40 99 SH12348 12348 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.679672 131.539091 39.679672 92.859419 66.2695455 1.821313992 0.145218 40 100 SH17019 17019 YGR148C_7_788173_787307_INTRON_1_392 intron 23.998224 86.733484 23.998224 63.73526 43.866742 1.64213538 -0.105288 40 101 SH2603 2603 Pro3 5' flank 23.491594 81.693378 52.592486 1.7209237 -0.39189 40 102 SH5863 5863 snR35 snR35 501 518 17.692194 76.509841 47.1010175 1.673030289 -0.85533 40 103 SH10419 10419 RUF8 RUF8 21 40 386.500911 993.805879 690.153395 2.838945629 -1.300923 40 104 SH21041 21041 YMR133W spliced 162.048553 414.245785 288.147169 2.459614357 -0.998109 41 2 SH8171 8171 snoRNA cluster 3; snR70 30.972064 106.76637 30.972064 76.794306 53.883185 1.731453259 0.194159 41 3 SH9733 9733 RUF4 RUF4 441 457 28.770622 80.757577 54.7640995 1.738495951 0.004854 41 4 SH12740 12740 MT COX1 COX1ai1 28.776416 107.141092 28.776416 79.364676 54.070546 1.732960755 0.022653 41 5 SH18807 18807 YNL301C_14_64561_63569_INTRON_113_544 intron/exon 102.164641 227.092987 102.164641 125.928346 114.0464935 2.057081937 0.465906 41 6 SH4497 4497 U3b (snR17b) U3b 41 60 33.733701 90.059032 61.8963665 1.791665155 0.070085 41 7 SH18553 18553 YMR230W_13_732413_733140_INTRON_53_462 intron 28.105844 116.71891 28.105844 89.613066 58.859455 1.769816236 -0.152759 41 8 SH21473 21473 copy of SH1243 30.641911 94.122745 62.382328 1.795061578 -0.113085 41 9 SH10572 10572 RUF8 RUF8 786 802 31.108704 75.846216 53.47746 1.728170772 0.21489 41 10 SH16871 16871 YGL187C_7_150529_149708_INTRON_1_342 intron 29.012363 112.525192 29.012363 84.512829 56.762596 1.754062249 -0.024887 41 11 SH7298 7298 snR66 5' 28.60521 83.236721 55.9209655 1.747574661 -0.036283 41 12 SH11667 11667 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5221 5234 32.453139 86.390889 59.422014 1.773947367 0.096381 41 13 SH3661 3661 Val2 tRNA 46 58 34.503451 87.045572 60.7745115 1.783721477 0.15848 41 14 SH1933 1933 Lys1 3' flank 27.87154 86.488203 57.1798715 1.757243175 -0.123605 41 15 SH16160 16160 YDR129C_4_715372_713333_INTRON_22_132 intron 27.315023 116.250839 27.315023 89.935816 58.6254195 1.768085963 -0.200743 41 16 SH6529 6529 snR46 snR46 136 156 26.419773 76.463215 51.441494 1.711313573 -0.102177 41 17 SH3020 3020 Ser2 tRNA 61 73 45.165857 90.994725 68.080291 1.833021403 0.293608 41 18 SH3126 3126 Ser4 tRNA 36 53 27.074107 81.282947 54.178527 1.733827193 -0.116153 41 19 SH5161 5161 snR13 5' 26.377826 68.760333 47.5690795 1.677324748 -0.003346 41 20 SH2242 2242 Phe1 86-72 + 3' flank 86 105 27.53442 75.170261 51.3523405 1.710560242 -0.006229 41 21 SH5657 5657 snR34 snR34 206 224 30.629354 88.391574 59.510464 1.774593336 -0.016448 41 22 SH1753 1753 Leu7 tRNA 61 75 31.025255 84.350525 57.68789 1.761084654 0.073132 41 23 SH7631 7631 snR189 3' 28.47501 79.536786 54.005898 1.732441192 0.000645 41 24 SH6210 6210 snR40 3' 31.468491 77.273762 54.3711265 1.735368331 0.217888 41 25 SH820 820 Glu1 3' flank 29.706935 77.239235 53.473085 1.72813524 0.109795 41 26 SH7193 7193 snR64 snR64 31 47 57.498387 119.179108 88.3387475 1.946151237 -0.0284 41 27 SH2190 2190 Met2 3' flank 27.63365 72.058101 49.8458755 1.697629228 0.041272 41 28 SH5001 5001 snR10 snR10 36 51 28.437602 84.081958 56.25978 1.75019803 -0.057471 41 29 SH16074 16074 YDR025W_4_491510_492319_INTRON_46_384 5' exon 33.508932 133.311714 33.508932 100.802782 67.155857 1.827083896 -0.164486 41 30 SH3582 3582 Val1 5' flank 26.585017 72.602473 49.593745 1.695426905 -0.040452 41 31 SH1817 1817 Leu8 3' flank 27.184092 77.009647 52.0968695 1.716811627 -0.054443 41 32 SH19171 19171 YPL079W_16_406631_407534_INTRON_12_432 intron 27.929261 106.139721 27.929261 79.21046 53.5698605 1.728920515 -0.031701 41 33 SH8957 8957 snR17a / U3a U3a 71 88 30.627082 95.904489 63.2657855 1.801168905 -0.142744 41 34 SH696 696 Gln3 tRNA 11 28 28.067913 86.293485 57.180699 1.75724946 -0.10812 41 35 SH13580 13580 MT COX1 Exon 6 30.181546 115.659425 30.181546 86.477879 58.3297125 1.765889836 -0.002301 41 36 SH9591 9591 RUF3 RUF3 341 358 32.444262 84.599365 58.5218135 1.767317776 0.128432 41 37 SH18892 18892 YOL120C_15_94401_93394_INTRON_113_559 exon/intron 29.973101 107.756091 29.973101 78.78299 54.3780455 1.735423594 0.106788 41 38 SH16308 16308 YDR450W_4_1359912_1360787_INTRON_48_482 intron 27.226009 99.615083 27.226009 73.389074 50.3075415 1.701633094 -0.004911 41 39 SH3296 3296 Thr2 3' flank 28.951367 83.77351 56.3624385 1.750989774 -0.020055 41 40 SH20866 20866 YLR093C spliced 31.13917 90.515078 60.827124 1.784097283 -0.031079 41 41 SH8412 8412 snoRNA cluster 5 snR190 29.210285 103.964025 29.210285 75.75374 52.4820125 1.72001048 0.097471 41 42 SH14492 14492 MT 21S rRNA 21S rRNA3 29.436162 101.119237 29.436162 72.683075 51.0596185 1.708077566 0.153415 41 43 SH7212 7212 snR64 3' 26.882457 77.230529 52.056493 1.716474907 -0.078334 41 44 SH20823 20823 YKR057W spliced 28.682336 88.370705 58.5265205 1.767352705 -0.103987 41 45 SH19470 19470 ADH1 28.202945 81.328964 54.7659545 1.738510661 -0.039753 41 46 SH10317 10317 RUF7 RUF7 196 212 30.114843 78.321789 54.218316 1.734146024 0.121555 41 47 SH12557 12557 MT_15S MT_15S 32.419507 114.31894 32.419507 82.899433 57.65947 1.760870646 0.158812 41 48 SH8024 8024 snoRNA cluster 2 snR55 28.322421 101.692742 28.322421 74.370321 51.346371 1.710509754 0.057765 41 49 SH423 423 Asp1 5' flank 30.812019 91.020134 60.9160765 1.784731923 -0.053823 41 50 SH3608 3608 Val1 tRNA 36 50 57.525975 106.938907 82.232441 1.915043182 0.181914 41 51 SH4961 4961 snR9 3' 28.828407 69.12466 48.9765335 1.689988043 0.162667 41 52 SH12561 12561 MT_15S MT_15S 26.830296 99.426069 26.830296 73.595773 50.2130345 1.700816468 -0.035805 41 53 SH48 48 Ala1 3' flank 27.085467 72.60714 49.8463035 1.697632957 -0.004599 41 54 SH15080 15080 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.383769 107.25322 27.383769 80.869451 54.12661 1.733410828 -0.089618 41 55 SH5051 5051 snR10 3' 70.85213 124.976634 97.914382 1.990846487 0.08965 41 56 SH110 110 Arg1 5' flank 30.098817 74.597717 52.348267 1.718902309 0.169327 41 57 SH5495 5495 snR32 snR32 136 153 29.937769 71.319575 50.628672 1.704396536 0.204212 41 58 SH15149 15149 MT tRNA Thr1 reverse complement tRNA / 3' 27.562561 104.16367 27.562561 77.601109 52.581835 1.720835738 -0.036052 41 59 SH13707 13707 MT tRNAGlu (and 5' processing site for COB) tRNA 27.570062 109.742043 27.570062 83.171981 55.3710215 1.743282536 -0.104952 41 60 SH9734 9734 RUF4 RUF4 446 462 29.804825 79.434752 54.6197885 1.737350014 0.087931 41 61 SH11031 11031 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2041 2054 867.11406 619.841802 743.477931 2.871268082 0.497873 41 62 SH13414 13414 MT COX1 intronic 24.868999 93.496621 24.868999 69.627622 47.2483105 1.674386284 -0.128525 41 63 SH17349 17349 YIL018W_9_316766_317930_INTRON_5_404 intron 28.229937 111.595279 28.229937 84.365342 56.2976395 1.750490186 -0.07465 41 64 SH10587 10587 RUF8 RUF8 861 876 31.756782 91.438674 61.597728 1.789564694 -0.020498 41 65 SH9446 9446 RUF2 RUF2 71 83 31.945756 83.966348 57.956052 1.763098793 0.119326 41 66 SH20289 20289 YDR471W spliced 32.087755 81.602937 56.845346 1.754694914 0.16943 41 67 SH16316 16316 YDR471W_4_1401759_1402553_INTRON_32_415 intron 29.632413 124.718991 29.632413 96.086578 62.8594955 1.798370891 -0.189867 41 68 SH16599 16599 YFL034C-A_6_64931_64242_INTRON_13_333 intron 29.273595 111.615239 29.273595 83.341644 56.3076195 1.750567167 0.005974 41 69 SH12067 12067 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7221 7239 31.418026 95.918508 63.668267 1.803923029 -0.118699 41 70 SH4989 4989 snR10 5' 29.454307 65.809463 47.631885 1.677897769 0.251193 41 71 SH949 949 Gly1 5' flank - tRNA12 12 71.936018 165.402998 118.669508 2.074339142 -0.406726 41 72 SH6262 6262 snR42 snR42 91 107 30.742291 81.220463 55.981377 1.748043577 0.119366 41 73 SH18989 18989 YOR096W_15_505793_506766_INTRON_145_545 3' exon 44.260296 155.299609 44.260296 112.039313 78.1498045 1.892927896 -0.146446 41 74 SH6103 6103 snR37 3' 47.774235 105.334019 76.554127 1.883968608 0.044416 41 75 SH15391 15391 YBL040C_2_142830_142074_INTRON_23_119 intron 31.844115 120.642164 31.844115 89.798049 60.821082 1.784054142 0.011186 41 76 SH10608 10608 RUF8 3' 26.459412 74.098532 50.278972 1.70138639 -0.069145 41 77 SH3422 3422 Trp1 5' flank 25.249438 64.316981 44.7832095 1.651115215 -0.019523 41 78 SH9991 9991 RUF5-1 761-775 + 3' 761 30.088581 89.611115 59.849848 1.777063052 -0.061487 41 79 SH21620 21620 copy of SH7515 30.182617 93.348308 61.7654625 1.790745698 -0.120518 41 80 SH18052 18052 YLR333C_12_796335_795573_INTRON_1_423 intron 34.982081 122.118893 34.982081 88.136812 61.5594465 1.789294706 0.144957 41 81 SH2144 2144 Met1 3' flank 28.893552 92.915343 60.9044475 1.784649008 -0.171745 41 82 SH18847 18847 YNL312W_14_48286_49215_INTRON_8_115 intron 27.229104 108.973974 27.229104 82.74487 54.986987 1.740259923 -0.123244 41 83 SH9395 9395 RUF1 3' 32.040703 93.212185 62.626444 1.796757753 -0.043806 41 84 SH20038 20038 YBR186W spliced 34.310359 88.532014 61.4211865 1.788318202 0.1193 41 85 SH2354 2354 Phe3 3' flank 27.394296 65.587117 46.4907065 1.667366146 0.114809 41 86 SH21818 21818 copy of SH15703 29.839573 91.395981 60.617777 1.782600006 -0.10312 41 87 SH17586 17586 YJL191W_10_73786_74610_INTRON_11_418 intron 27.437966 106.358935 27.437966 79.920969 53.6794675 1.729808199 -0.074081 41 88 SH5232 5232 snR30 snR30 11 25 34.028257 79.463636 56.7459465 1.753934844 0.289114 41 89 SH19913 19913 YAL003W spliced 31.131244 85.186272 58.158758 1.764615123 0.062445 41 90 SH16750 16750 YGL076C_7_365994_364333_INTRON_565_1032 intron 26.041823 99.551579 26.041823 74.509756 50.2757895 1.701358899 -0.105092 41 91 SH11371 11371 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3741 3758 44.168787 86.940987 65.554887 1.816605073 0.36924 41 92 SH400 400 Asn1 3' flank 29.230299 63.336857 46.283578 1.665426925 0.273239 41 93 SH12267 12267 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.759253 111.14192 28.759253 83.382667 56.07096 1.748737992 -0.027918 41 94 SH17585 17585 YJL191W_10_73786_74610_INTRON_11_418 intron 29.570055 147.615919 29.570055 119.045864 74.3079595 1.871035336 -0.609155 41 95 SH6857 6857 snR56 5' 28.87789 65.93408 47.405985 1.675833175 0.211316 41 96 SH14117 14117 MT COB intronic 27.374413 113.061891 27.374413 86.687478 57.0309455 1.756110572 -0.15982 41 97 SH139 139 Arg1 71-73 + 3' flank 71 3' flank 27.646596 77.640996 52.643796 1.721347198 -0.03083 41 98 SH15957 15957 YDL130W_4_229906_230527_INTRON_115_415 intron 27.437997 111.449493 27.437997 85.011496 56.2247465 1.749927506 -0.135902 41 99 SH4559 4559 U3b (snR17b) U3b 351 367 29.254541 65.862912 47.5587265 1.677230217 0.237308 41 100 SH12460 12460 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 52222.57461 67147.82581 52222.57461 14926.2512 33574.41291 4.526008427 0.83011 41 101 SH15107 15107 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 24.647619 80.886825 24.647619 57.239206 40.9434125 1.612184037 0.05631 41 102 SH19128 19128 YPL075W_16_412249_415357_INTRON_9_759 intron 23.983659 97.423817 23.983659 74.440158 49.2119085 1.692070208 -0.262749 41 103 SH10206 10206 RUF6 RUF6 876 896 92.055626 204.339845 148.1977355 2.170841568 -0.499419 41 104 SH18884 18884 YOL047C_15_242745_241612_INTRON_244_306 exon/intron 69.861671 251.318887 69.861671 182.457216 126.1594435 2.100919765 -0.614224 42 2 SH12515 12515 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.081941 110.588851 28.081941 83.50691 55.7944255 1.74659081 -0.074314 42 3 SH19504 19504 YPT1 34.937651 100.007221 67.472436 1.82912639 -0.112708 42 4 SH17536 17536 YJL177W_10_90783_91654_INTRON_310_626 intron 28.051639 105.652203 28.051639 78.600564 53.3261015 1.726939835 -0.015724 42 5 SH7892 7892 snoRNA cluster1 intergenic 32.10538 137.260699 32.10538 106.155319 69.1303495 1.839668753 -0.306119 42 6 SH17102 17102 YHL001W_8_104270_105084_INTRON_130_527 intron 27.423205 95.797274 27.423205 69.374069 48.398637 1.684833131 0.062975 42 7 SH13949 13949 MT COB Cytbi3 29.818514 112.236865 29.818514 83.418351 56.6184325 1.752957842 0.037225 42 8 SH5151 5151 snR13 5' 54.490206 89.558758 72.024482 1.857480144 0.486019 42 9 SH17526 17526 YJL136C_10_156971_156248_INTRON_25_484 intron 28.483679 95.086932 28.483679 67.603253 48.043466 1.681634331 0.160856 42 10 SH7506 7506 snR71 3' 28.689193 74.101768 51.3954805 1.710924931 0.085631 42 11 SH13544 13544 MT COX1 intronic 28.465387 111.80809 28.465387 84.342703 56.404045 1.75131025 -0.058732 42 12 SH5348 5348 snR30 591-601+3' 591 32.429018 102.395737 67.4123775 1.828739644 -0.224324 42 13 SH5597 5597 snR34 5' 27.630308 81.285927 54.4581175 1.736062625 -0.077874 42 14 SH14344 14344 MT VAR1 includes 5’ processing site VAR1/3' 26.013976 102.84032 26.013976 77.826344 51.92016 1.715336022 -0.148942 42 15 SH66 66 Ala2 5' flank 28.279326 90.781746 59.530536 1.774739793 -0.164567 42 16 SH2562 2562 Pro2 tRNA-intron 46 63 44.272871 96.853313 70.563092 1.848577603 0.149224 42 17 SH5412 5412 snR31 snR31 126 142 27.963192 76.437794 52.200493 1.717674605 0.006261 42 18 SH11898 11898 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6376 6391 26800.25675 16617.71629 21708.98652 4.336639549 -0.210971 42 19 SH14142 14142 MT COB intronic 30.613185 125.864373 30.613185 96.251188 63.4321865 1.802309682 -0.148933 42 20 SH9515 9515 RUF3 5' 29.418863 87.364155 58.391509 1.766349699 -0.05233 42 21 SH1049 1049 Gly3 5' flank 32.640196 96.302628 64.471412 1.809367182 -0.094196 42 22 SH13454 13454 MT COX1 intronic 28.395146 97.861868 28.395146 70.466722 49.430934 1.693998817 0.115053 42 23 SH12617 12617 MT_15S MT_15S 26.007009 105.975759 26.007009 80.96875 53.4878795 1.728255381 -0.188041 42 24 SH12884 12884 MT COX1 COX1ai1 27.947523 105.591534 27.947523 78.644011 53.295767 1.726692717 -0.023284 42 25 SH20025 20025 YBR119W spliced 29.810557 87.456295 58.633426 1.768145271 -0.036259 42 26 SH19534 19534 CBP1 1.2 36.839849 114.33326 75.5865545 1.878444549 -0.344837 42 27 SH14689 14689 MT 21S rRNA 3' 27.423896 97.104877 27.423896 70.680981 49.0524385 1.690660602 0.045115 42 28 SH5345 5345 snR30 snR30 576 593 29.400907 84.299254 56.8500805 1.754731084 0.002098 42 29 SH19053 19053 YOR234C_15_779404_778554_INTRON_20_546 intron 35.732039 130.283054 35.732039 95.551015 65.641527 1.817178675 -0.00093 42 30 SH19222 19222 YPL090C_16_378390_377286_INTRON_7_400 5' exon 31.035477 120.262293 31.035477 90.226816 60.6311465 1.782695781 -0.030609 42 31 SH9124 9124 snR14 / U4 RNA 3' 33.896724 97.702883 65.7998035 1.818224597 -0.091223 42 32 SH16263 16263 YDR424C_4_1319830_1319376_INTRON_26_121 intron 29.909191 106.841823 29.909191 77.932632 53.9209115 1.731757225 0.113631 42 33 SH9581 9581 RUF3 RUF3 291 307 30.325798 74.34574 52.335769 1.71879861 0.186871 42 34 SH15740 15740 YCR028C-A_3_173432_172942_INTRON_243_325 intron 29.164029 105.330117 29.164029 77.166088 53.1650585 1.725626296 0.075991 42 35 SH5570 5570 snR33 snR33 136 153 30.147372 74.412 52.279686 1.71833297 0.17486 42 36 SH13764 13764 MT COB intronic 27.645603 105.4622 27.645603 78.816597 53.2311 1.726165441 -0.045944 42 37 SH4626 4626 snR3 snR3 46 63 27.599479 76.535472 52.0674755 1.716566521 -0.019686 42 38 SH8467 8467 snoRNA cluster 5 3' 27.296054 98.674326 27.296054 72.378272 49.837163 1.697553312 0.013346 42 39 SH20325 20325 YER056C-A spliced 40.843172 108.007582 74.425377 1.871721043 -0.140977 42 40 SH352 352 Arg5 3' flank 660.303182 939.198911 799.7510465 2.902954817 -0.51436 42 41 SH18497 18497 YMR194W_13_651144_651909_INTRON_17_479 intron 29.323033 132.751351 29.323033 104.428318 66.8756755 1.825268182 -0.350293 42 42 SH1581 1581 Leu4 tRNA 76 92 902.882276 1008.74752 955.814898 2.980373795 -0.216963 42 43 SH19968 19968 YBL072C spliced 62.710497 122.422385 92.566441 1.966453566 0.005389 42 44 SH8736 8736 LSR1 / U2 RNA U2 321 340 30.925296 83.79117 57.358233 1.758595764 0.079106 42 45 SH14373 14373 MT ORF9 and ORF10 (hypothetical) ORF10 28.02609 109.93745 28.02609 82.91136 55.468725 1.744048183 -0.070899 42 46 SH1177 1177 His1 3' flank 34.129969 81.534648 57.8323085 1.762170528 0.253307 42 47 SH12575 12575 MT_15S MT_15S 40.909434 141.76545 40.909434 101.856016 71.382725 1.853593123 -0.020409 42 48 SH19013 19013 YOR182C_15_678792_678190_INTRON_4_414 intron 27.160431 103.799285 27.160431 77.638854 52.3996425 1.719328324 -0.064231 42 49 SH7377 7377 snR68 snR68 106 123 31.263911 88.803332 60.0336215 1.778394543 0.003807 42 50 SH20971 20971 YML034W spliced 29.3962 74.863186 52.129693 1.717085167 0.121266 42 51 SH13693 13693 MT ORF 5 (hypothetical) 3' 27.134276 97.580533 27.134276 71.446257 49.2902665 1.692761166 0.014335 42 52 SH3517 3517 Tyr1 3' flank 29.437202 93.826785 61.6319935 1.789806215 -0.161897 42 53 SH1843 1843 Leu9 5' flank 27.222604 78.399286 52.810945 1.722723939 -0.069681 42 54 SH9632 9632 RUF4 5' 39.256996 96.26668 67.761838 1.830985177 0.062079 42 55 SH6639 6639 snR48 snR48 21 40 27.525039 70.697038 49.1110385 1.691179118 0.051987 42 56 SH4671 4671 snR3 3' 29.715261 89.653544 59.6844025 1.775860851 -0.07893 42 57 SH9146 9146 snR7 U5 RNA U5 1 17 31.816093 82.052189 56.934141 1.755372773 0.149557 42 58 SH16761 16761 YGL087C_7_346902_346404_INTRON_12_96 intron 31.779485 123.539794 31.779485 92.760309 62.269897 1.794278147 -0.041741 42 59 SH4056 4056 SRP RNA SRP RNA 171 190 27.18458 82.681716 54.933148 1.739834487 -0.125563 42 60 SH20835 20835 YKR095W-A spliced 31.84407 97.978881 64.9114755 1.812321481 -0.150344 42 61 SH14382 14382 MT ORF9 and ORF10 (hypothetical) 3' 29.622271 97.927266 29.622271 69.304995 49.463633 1.694286011 0.212482 42 62 SH16176 16176 YDR305C_4_1073479_1072737_INTRON_88_176 intron 34.315219 132.04554 34.315219 98.730321 66.52277 1.822970325 -0.101978 42 63 SH18297 18297 YML073C_13_124172_123227_INTRON_16_430 intron 31.768919 126.046297 31.768919 95.277378 63.5231485 1.802932016 -0.095587 42 64 SH20196 20196 YDR005C spliced 27.102551 86.37401 56.7382805 1.75387617 -0.174999 42 65 SH9317 9317 RUF1 RUF1 161 178 27.227123 75.848136 51.5376295 1.712124439 -0.036458 42 66 SH15158 15158 MT tRNA Val 5' 27.267689 103.981299 27.267689 77.71361 52.4906495 1.720081947 -0.057768 42 67 SH7945 7945 snoRNA cluster1 3' 28.161066 106.019568 28.161066 78.858502 53.509784 1.728433198 -0.011669 42 68 SH5770 5770 snR35 snR35 36 53 28.886324 70.690944 49.788634 1.697130211 0.145032 42 69 SH7426 7426 snR69 snR69 31 47 37.934937 98.28745 68.1111935 1.83321849 -0.008956 42 70 SH3121 3121 Ser4 tRNA 11 25 1132.426901 1922.813054 1527.619978 3.184015329 -0.929628 42 71 SH7953 7953 snoRNA cluster 2 5' 26.750958 110.531632 26.750958 84.780674 55.765816 1.746368061 -0.180959 42 72 SH2585 2585 Pro2 3' flank 25.978316 74.765326 50.371821 1.702187651 -0.11308 42 73 SH9397 9397 RUF1 3' 26.85172 70.146022 48.498871 1.685731629 0.0118 42 74 SH1762 1762 Leu7 3' flank 23.676528 76.535152 50.10584 1.699888347 -0.314203 42 75 SH11652 11652 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5146 5161 41.706205 97.903941 69.805073 1.843886986 0.077087 42 76 SH6968 6968 snR60 5' 58.347019 111.044436 84.6957275 1.927861503 0.122408 42 77 SH12671 12671 MT_15S 3' 29.34065 132.14009 29.34065 103.79944 66.570045 1.823278851 -0.337514 42 78 SH18245 18245 YML034W_13_209525_212155_INTRON_1921_2046 5' exon 27.921427 104.221877 27.921427 77.30045 52.6109385 1.721076049 -0.007791 42 79 SH3329 3329 Thr3 5' flank - tRNA8 8 28.147281 72.803511 50.475396 1.703079735 0.066864 42 80 SH20040 20040 YBR189W spliced 51.128877 110.671456 80.9001665 1.907949415 0.006549 42 81 SH19262 19262 YPL143W_16_282121_282969_INTRON_20_544 intron 29.035617 113.44254 29.035617 85.406923 57.22127 1.757557493 -0.03483 42 82 SH13352 13352 MT COX1 intronic 29.30172 101.917716 29.30172 73.615996 51.458858 1.711460144 0.13202 42 83 SH10216 10216 RUF6 RUF6 926 945 26.966064 73.872086 50.419075 1.702594874 -0.029681 42 84 SH11189 11189 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2831 2849 29.268512 83.592315 56.4304135 1.751513233 0.00264 42 85 SH2004 2004 Lys3 5' flank 27.112146 97.446048 62.279097 1.794342307 -0.330569 42 86 SH12816 12816 MT COX1 COX1ai1 27.159724 95.833301 27.159724 69.673577 48.4166505 1.684994741 0.040249 42 87 SH19767 19767 Negative Control 31.729424 91.494182 61.611803 1.789663918 -0.02259 42 88 SH15309 15309 YAL001C_1_151163_147591_INTRON_71_160 3'exon 26.990393 101.417587 26.990393 75.427194 51.2087935 1.709344544 -0.047935 42 89 SH1696 1696 Leu6 tRNA 46 58 31.255756 83.921902 57.588829 1.760338248 0.09092 42 90 SH15139 15139 MT tRNA Thr1 reverse complement 5' 26.245929 95.813698 26.245929 70.567769 48.406849 1.684906814 -0.037897 42 91 SH14722 14722 MT tRNA cys; tRNA his tRNA Cys 29.780977 135.775554 29.780977 106.994577 68.387777 1.834978487 -0.386346 42 92 SH8951 8951 snR17a / U3a U3a 41 56 37.189521 102.396354 69.7929375 1.843811478 -0.109758 42 93 SH6625 6625 snR48 5' 27.826179 64.54359 46.1848845 1.664499862 0.160324 42 94 SH17224 17224 YHR041C_8_189855_189122_INTRON_15_115 3' exon 42.146076 134.280899 42.146076 93.134823 67.6404495 1.830206485 0.188724 42 95 SH8284 8284 snoRNA cluster4 intergenic 26.442196 107.02665 26.442196 81.584454 54.013325 1.732500913 -0.164358 42 96 SH11232 11232 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3046 3067 2890.177474 3402.393048 3146.285261 3.497798096 -0.604193 42 97 SH489 489 Asp2 tRNA 6 23 109.715108 149.870158 129.792633 2.113250043 0.23888 42 98 SH9861 9861 RUF5-1 RUF5-1 111 131 30.27318 80.08419 55.178685 1.741771346 0.109156 42 99 SH16803 16803 YGL137W_7_249872_252741_INTRON_19_218 intron 33.189256 125.878039 33.189256 93.688783 63.4390195 1.802356462 -0.02406 42 100 SH5448 5448 snR32 5' 31.169873 97.124734 64.1473035 1.807178405 -0.150854 42 101 SH15454 15454 YBL087C_2_60732_59815_INTRON_43_546 intron 22.958806 99.838801 22.958806 77.879995 50.4194005 1.702597677 -0.390199 42 102 SH4217 4217 telomerase RNA telomerase 121 135 301.300545 688.603748 494.9521465 2.694563212 -1.032993 42 103 SH11724 11724 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5506 5521 91.729024 204.814813 148.2719185 2.171058907 -0.507561 42 104 SH19940 19940 YBL027W spliced 58.067156 137.06692 97.567038 1.989303121 -0.284832 43 2 SH4759 4759 snR5 5' 28.379849 79.749258 54.0645535 1.732912621 -0.008333 43 3 SH10763 10763 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 701 719 27.235246 67.177707 47.2064765 1.674001586 0.080602 43 4 SH7220 7220 snR64 3' 27.254101 81.829096 54.5415985 1.736727862 -0.110372 43 5 SH12178 12178 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7776 7798 26.993236 67.516739 47.2549875 1.674447653 0.058582 43 6 SH20955 20955 YML024W spliced 41.854837 99.042188 70.4485125 1.847871828 0.056172 43 7 SH16519 16519 YER131W_5_423587_424307_INTRON_1_361 5' exon 27.181458 107.241947 27.181458 81.060489 54.1209735 1.7333656 -0.105953 43 8 SH5473 5473 snR32 snR32 26 43 29.930015 82.660765 56.29539 1.750472832 0.055971 43 9 SH4575 4575 U3b (snR17b) U3b 431 443 36.996308 96.672227 66.8342675 1.824999193 0.004609 43 10 SH21710 21710 copy of SH11290 26.054523 64.866902 45.4607125 1.657636238 0.030494 43 11 SH12251 12251 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.53877 121.16294 30.53877 91.62417 61.08147 1.78590948 -0.075977 43 12 SH21351 21351 YPR132W spliced 34.675075 84.312346 59.4937105 1.774471056 0.222691 43 13 SH3028 3028 Ser2 3' flank 27.261333 60.972489 44.116911 1.644605096 0.178045 43 14 SH9725 9725 RUF4 RUF4 401 416 26.171105 68.576877 47.373991 1.675539973 -0.015934 43 15 SH729 729 Gln4 5' flank 44.865799 94.861529 69.863664 1.844251358 0.202774 43 16 SH15846 15846 YDL075W_4_322225_322987_INTRON_58_478 intron 25.232315 99.153684 25.232315 74.921369 50.076842 1.699636933 -0.171192 43 17 SH413 413 Asn1 3' flank 30.0064 87.427722 58.717061 1.768764309 -0.026989 43 18 SH13583 13583 MT COX1 Exon 6 28.875047 91.973175 28.875047 64.098128 46.4865875 1.667327667 0.238225 43 19 SH6793 6793 snR50 3' 27.572361 67.748825 47.660593 1.678159442 0.096169 43 20 SH9891 9891 RUF5-1 RUF5-1 261 280 28.424722 72.174135 50.2994285 1.701563051 0.094084 43 21 SH13690 13690 MT ORF 5 (hypothetical) ORF5 27.016758 95.883207 27.016758 69.866449 48.4416035 1.685218511 0.027432 43 22 SH3222 3222 Thr1 5' flank 27.602047 96.490959 62.046503 1.792717309 -0.291363 43 23 SH15831 15831 YDL075W_4_322225_322987_INTRON_58_478 intron 31.248305 125.668275 31.248305 95.41997 63.3341375 1.801637861 -0.112747 43 24 SH21663 21663 copy of SH9193 27.409119 67.677361 47.54324 1.677088775 0.085747 43 25 SH14132 14132 MT COB intronic 27.193366 96.299984 27.193366 70.106618 48.649992 1.687082773 0.036687 43 26 SH3525 3525 Tyr1 3' flank 29.546355 86.940573 58.243464 1.765247197 -0.039024 43 27 SH2140 2140 Met1 3' flank 29.624581 75.356588 52.4905845 1.720081409 0.12927 43 28 SH2300 2300 Phe2 3' flank 29.399936 77.348565 53.3742505 1.72733179 0.088806 43 29 SH9454 9454 RUF2 RUF2 111 128 29.035273 66.846405 47.940839 1.68070563 0.208597 43 30 SH1549 1549 Leu4 5' flank 31.162396 81.360811 56.2616035 1.750212106 0.134861 43 31 SH10922 10922 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1496 1515 527.651601 547.897145 537.774373 2.730600103 0.051176 43 32 SH5894 5894 snR36 5' 29.312545 93.782259 61.547402 1.789209725 -0.166842 43 33 SH19383 19383 YPR043W_16_654161_654842_INTRON_3_405 intron 29.661407 113.006892 29.661407 84.345485 57.003446 1.755901111 0.013056 43 34 SH17412 17412 YIL106W_9_166412_167441_INTRON_21_105 intron 27.322153 104.920186 27.322153 78.598033 52.960093 1.723948739 -0.065339 43 35 SH3456 3456 Trp1 3' flank 26.99132 75.234063 51.1126915 1.708528751 -0.045409 43 36 SH17338 17338 YIL018W_9_316766_317930_INTRON_5_404 intron 102.115353 264.223398 102.115353 163.108045 132.611699 2.122581839 0.009261 43 37 SH14937 14937 MT tRNA Asn 3' 26.939583 94.85143 26.939583 68.911847 47.925715 1.680568601 0.035125 43 38 SH14191 14191 MT COB Exon6 29.375291 103.925734 29.375291 75.550443 52.462867 1.71985202 0.110775 43 39 SH4505 4505 U3b (snR17b) U3b 81 98 29.373803 88.393484 58.8836435 1.769994675 -0.072502 43 40 SH6812 6812 snR52 5' 29.418994 83.861996 56.640495 1.75312704 0.009078 43 41 SH5593 5593 snR33 3' 29.415289 75.772181 52.593735 1.720934014 0.110405 43 42 SH12016 12016 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6966 6989 29.230482 77.444305 53.3373935 1.727031789 0.076676 43 43 SH8668 8668 LSR1 / U2 RNA 5' 28.917948 76.188716 52.553332 1.720600256 0.072787 43 44 SH18707 18707 YNL130C_14_381156_379555_INTRON_30_470 intron 30.709564 112.014401 30.709564 82.304837 56.5072005 1.752103792 0.097424 43 45 SH7813 7813 snoRNA cluster1 intergenic 30.065869 124.719016 30.065869 95.653147 62.859508 1.798370977 -0.163437 43 46 SH2289 2289 Phe2 tRNA-intron/exon 41 58 27.48826 76.727905 52.1080825 1.716905092 -0.029808 43 47 SH13234 13234 MT COX1 COX1-ai4 25.538225 91.663 25.538225 67.124775 46.3315 1.665876361 -0.041688 43 48 SH20716 20716 YJL041W spliced 32.919598 91.531765 62.2256815 1.793969662 0.016266 43 49 SH4642 4642 snR3 snR3 126 141 29.267361 81.762602 55.5149815 1.744410199 0.024725 43 50 SH9464 9464 RUF2 RUF2 161 180 27.343094 84.989423 56.1662585 1.749475494 -0.14217 43 51 SH15710 15710 YBR220C_2_663261_662457_INTRON_302_722 intron 54.762748 160.622695 54.762748 106.859947 80.8113475 1.907472349 0.137695 43 52 SH7328 7328 snR66 3' 38.487478 98.582048 68.534763 1.835910915 -0.003231 43 53 SH8406 8406 snoRNA cluster 5 snR190 29.261804 108.473096 29.261804 80.211292 54.736548 1.738277405 0.043546 43 54 SH8093 8093 snoRNA cluster 2 3' 29.641445 114.099865 29.641445 85.45842 57.5499325 1.760044819 -0.008123 43 55 SH13426 13426 MT COX1 intronic 27.414499 93.139971 27.414499 66.725472 47.0699855 1.672744065 0.099717 43 56 SH13687 13687 MT ORF 5 (hypothetical) ORF5 31.804849 119.854296 31.804849 89.049447 60.427148 1.781232097 0.022485 43 57 SH18139 18139 YLR406C_12_931752_931062_INTRON_58_406 intron 33.816209 132.990421 33.816209 100.174212 66.9952105 1.826043756 -0.143981 43 58 SH4021 4021 SRP RNA 5' - 13 13 29.161602 84.634357 56.8979795 1.755096844 -0.016658 43 59 SH5389 5389 snR31 snR31 11 27 33.809293 80.901464 57.3553785 1.75857415 0.252733 43 60 SH17858 17858 YKR095W-A_11_625432_625839_INTRON_39_113 3' exon 38.681775 128.848033 38.681775 91.166258 64.9240165 1.812405379 0.162218 43 61 SH1955 1955 Lys2 5' flank 27.241576 72.145873 49.6937245 1.696301548 0.012585 43 62 SH13481 13481 MT COX1 intronic 27.192678 97.95629 27.192678 71.763612 49.478145 1.694413409 0.014223 43 63 SH9488 9488 RUF2 3' 31.456526 73.170363 52.3134445 1.718613316 0.271801 43 64 SH20945 20945 YLR426W spliced 28.889609 77.938799 53.414204 1.727656761 0.048202 43 65 SH21291 21291 YPL175W spliced 28.966705 87.338859 58.152782 1.764570496 -0.072613 43 66 SH11035 11035 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2061 2074 26.77236 81.418169 54.0952645 1.733159249 -0.138934 43 67 SH5909 5909 snR36 snR36 1 17 37.929412 93.200005 65.5647085 1.816670135 0.10055 43 68 SH13842 13842 MT COB Cytbi2 28.502627 116.778817 28.502627 89.27619 58.8894085 1.770037192 -0.128169 43 69 SH328 328 Arg5 5' flank 28.507346 81.026162 54.766754 1.738517001 -0.015791 43 70 SH6969 6969 snR60 5' 31.035182 77.533728 54.284455 1.734675482 0.1884 43 71 SH2624 2624 Pro3 tRNA 71 83 191.713414 270.199452 230.956433 2.363530063 -0.086694 43 72 SH10925 10925 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1511 1528 19105.77557 12104.13938 15604.95747 4.193262589 -0.152147 43 73 SH3533 3533 Tyr2 5' flank 29.499479 71.13125 50.3153645 1.701700623 0.179071 43 74 SH10800 10800 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS/18S 886 904 28.33597 70.048336 49.192153 1.691895831 0.11675 43 75 SH3032 3032 Ser2 3' flank 27.516689 79.383072 53.4498805 1.727946739 -0.061921 43 76 SH13826 13826 MT COB Cytbi2 42.563172 138.859886 42.563172 97.296714 69.929943 1.844663174 0.106654 43 77 SH3595 3595 Val1 5' flank 26.978125 69.606868 48.2924965 1.683879657 0.028248 43 78 SH8199 8199 snoRNA cluster 3; intergenic 32.32036 116.575055 32.32036 85.254695 58.7875275 1.769285195 0.111374 43 79 SH6452 6452 snR45 snR45 106 120 34.961101 96.906763 65.933932 1.819108976 -0.048183 43 80 SH12628 12628 MT_15S MT_15S 26.182373 90.546985 26.182373 65.364612 45.7734925 1.66061405 0.031876 43 81 SH13215 13215 MT COX1 COX1-ai4 24.151299 93.48049 24.151299 70.329191 47.240245 1.674312141 -0.19345 43 82 SH20711 20711 YJL041W spliced 26.347077 69.709499 48.028288 1.681497106 -0.018747 43 83 SH6806 6806 snR52 5' 39.689975 95.118746 67.4043605 1.828687993 0.095847 43 84 SH16990 16990 YGR118W_7_726968_727725_INTRON_66_385 intron 28.402235 105.529765 28.402235 78.12753 53.2648825 1.726440973 0.013722 43 85 SH5059 5059 snR10 3' 26.237607 82.298901 54.268254 1.734545849 -0.187722 43 86 SH653 653 Gln2 tRNA 51 63 39.861429 92.731255 66.296342 1.821489566 0.151827 43 87 SH8819 8819 LSR1 / U2 RNA U2 736 752 28.786071 72.029818 50.4079445 1.702498988 0.120333 43 88 SH13818 13818 MT COB Cytbi2 28.975177 107.890586 28.975177 79.915409 54.445293 1.735960339 0.028699 43 89 SH703 703 Gln3 tRNA 46 58 33.407796 93.514514 63.461155 1.802507972 -0.014669 43 90 SH15575 15575 YBR084C-A_2_415219_414144_INTRON_3_508 intron 26.248337 91.944258 26.248337 66.695921 46.472129 1.667192569 0.016428 43 91 SH13534 13534 MT COX1 intronic 27.605224 112.686382 27.605224 86.081158 56.843191 1.75467845 -0.136972 43 92 SH6906 6906 snR56 3' 26.299483 100.649951 63.474717 1.802600773 -0.421344 43 93 SH17633 17633 YJR094W-A_10_608000_608553_INTRON_3_277 intron 27.127126 116.556914 27.127126 90.429788 58.778457 1.769218181 -0.219233 43 94 SH2155 2155 Met2 5' flank 35.022951 90.819367 62.921159 1.798796714 0.085071 43 95 SH8683 8683 LSR1 / U2 RNA U2 56 73 29.34924 88.314777 58.8320085 1.769613675 -0.072244 43 96 SH18745 18745 YNL162W_14_331319_332151_INTRON_5_516 intron 27.859587 110.747537 27.859587 83.88795 55.8737685 1.747207964 -0.09385 43 97 SH1885 1885 Leu9 3' flank 28.585031 75.067662 51.8263465 1.714550594 0.065811 43 98 SH2072 2072 Lys4 tRNA-exon/intron 26 41 28.33101 69.051131 48.6910705 1.687449323 0.130171 43 99 SH19458 19458 CYC1 27.988307 77.242321 52.615314 1.721112167 -0.00253 43 100 SH4673 4673 snR4 5' 27.393434 70.747606 49.07052 1.69082066 0.04207 43 101 SH18958 18958 YOL127W_15_80347_81189_INTRON_14_427 intron 23.615729 96.783422 23.615729 74.167693 48.891711 1.689235236 -0.289003 43 102 SH21489 21489 copy of SH2037 224.707528 550.265068 387.486298 2.58825635 -1.045946 43 103 SH1988 1988 Lys2 3' flank 101.21253 188.019449 144.6159895 2.160216313 -0.245667 43 104 SH21560 21560 copy of SH4990 46.998101 97.874205 72.436153 1.859955377 0.179155 44 2 SH8732 8732 LSR1 / U2 RNA U2 301 318 26.401739 72.197461 49.2996 1.692843396 -0.048407 44 3 SH8574 8574 snR19 / U1 RNA U1 366 380 43.61668 106.113174 74.864927 1.874278405 -0.048775 44 4 SH7817 7817 snoRNA cluster1 intergenic 26.582684 99.014381 26.582684 73.431697 50.0071905 1.699032456 -0.051519 44 5 SH17139 17139 YHR010W_8_126513_127484_INTRON_32_592 intron 24.417498 93.211592 24.417498 69.794094 47.105796 1.673074347 -0.165199 44 6 SH1244 1244 Ile2 5' flank 38.965017 95.853202 67.4091095 1.82871859 0.064815 44 7 SH14719 14719 MT tRNA cys; tRNA his tRNA Cys 24.692551 87.407354 24.692551 63.714803 44.203677 1.645458397 -0.05165 44 8 SH11992 11992 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6846 6863 27.342204 71.491688 49.416946 1.693875902 0.028426 44 9 SH18312 18312 YML073C_13_124172_123227_INTRON_16_430 intron 27.546186 96.61629 27.546186 70.070104 48.808145 1.688492302 0.062013 44 10 SH8305 8305 snoRNA cluster4 intergenic 34.323212 129.79837 34.323212 96.475158 65.399185 1.815572336 -0.054857 44 11 SH6423 6423 snR45 5' 25.812089 70.127871 47.96998 1.680969537 -0.063996 44 12 SH12366 12366 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.709004 92.5404 25.709004 67.831396 46.7702 1.669969227 -0.039753 44 13 SH19714 19714 Negative Control 52.668687 104.456954 78.5628205 1.895217067 0.148185 44 14 SH5103 5103 snR11 snR11 116 132 44.764181 91.398081 68.081131 1.833026762 0.277136 44 15 SH1989 1989 Lys2 3' flank 478.237642 415.381733 446.8096875 2.650122581 0.369945 44 16 SH11663 11663 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5201 5216 35.5325 85.010988 60.271744 1.780113758 0.231627 44 17 SH5937 5937 snR36 snR36 141 153 23.825504 69.199728 46.512616 1.667570766 -0.202383 44 18 SH5106 5106 snR11 snR11 131 148 26.303997 66.452997 46.378497 1.66631667 0.024009 44 19 SH19461 19461 CYC1 35.346105 93.986993 64.666549 1.810679685 0.023302 44 20 SH2851 2851 Pro7 tRNA-intron/exon 61 75 38.579199 107.275888 72.9275435 1.862891585 -0.175596 44 21 SH4573 4573 U3b (snR17b) U3b 421 436 75.223302 125.816854 100.520078 2.002252817 0.139488 44 22 SH8422 8422 snoRNA cluster 5 snR190 72.211729 211.015733 72.211729 139.804004 106.0078665 2.025338094 -0.097548 44 23 SH11389 11389 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3831 3848 26847.45427 15558.87894 21203.1666 4.326400726 -0.104693 44 24 SH6669 6669 snR48 3' 40.587425 96.030293 68.308859 1.834477031 0.094571 44 25 SH18011 18011 YLR287C-A_12_713158_712537_INTRON_4_433 intron 31.31719 112.904644 31.31719 82.587454 56.952322 1.755511435 0.118344 44 26 SH11351 11351 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3641 3656 364.589583 355.731149 360.160366 2.556495919 0.273505 44 27 SH1703 1703 Leu6 81-84 + 3' flank 81 27.159804 72.959561 50.0596825 1.699488091 -0.003967 44 28 SH12820 12820 MT COX1 COX1ai1 31.820939 127.45018 31.820939 96.629241 64.22509 1.807704722 -0.122799 44 29 SH2254 2254 Phe1 3' flank 31.699892 91.037936 61.368914 1.787948438 -0.016103 44 30 SH19326 19326 YPL218W_16_138697_139408_INTRON_29_167 intron 28.028534 99.863099 28.028534 72.834565 50.4315495 1.702702312 0.058313 44 31 SH1285 1285 Ile2 tRNA 121 133 62.100502 132.901308 97.500905 1.989008647 -0.159749 44 32 SH6630 6630 snR48 5' 30.915087 75.748362 53.3317245 1.726985627 0.204419 44 33 SH11585 11585 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4811 4824 12911.9849 7247.593776 10079.78934 4.003451456 0.147695 44 34 SH1490 1490 Leu3 5' flank 28.282655 83.265226 55.7739405 1.746431329 -0.057993 44 35 SH20242 20242 YDR367W spliced 32.303137 94.826883 63.56501 1.80321812 -0.07171 44 36 SH2540 2540 Pro2 5' flank 41.28862 90.505334 65.896977 1.818865492 0.230885 44 37 SH10450 10450 RUF8 RUF8 176 192 32.854977 97.842822 65.3488995 1.815238278 -0.12081 44 38 SH13241 13241 MT COX1 COX1-ai4 29.057427 112.718989 29.057427 84.661562 56.8594945 1.754802994 -0.023723 44 39 SH8703 8703 LSR1 / U2 RNA U2 156 171 29.556697 72.594419 51.075558 1.70821312 0.162336 44 40 SH12750 12750 MT COX1 COX1ai1 27.392594 96.914461 27.392594 70.521867 48.9572305 1.689816842 0.045078 44 41 SH13517 13517 MT COX1 intronic 29.477154 130.904782 29.477154 102.427628 65.952391 1.819230545 -0.30653 44 42 SH9084 9084 snR14 / U4 RNA U4 36 52 35.982186 100.812754 68.39747 1.835040038 -0.104763 44 43 SH14390 14390 MT 21S rRNA 5' 28.616046 100.441925 28.616046 72.825879 50.7209625 1.705187486 0.09821 44 44 SH7518 7518 snR79 5' 27.103732 78.787535 52.9456335 1.723830149 -0.082873 44 45 SH12693 12693 MT ORF 8 (hypothetical) 5' 27.785548 96.41329 27.785548 69.627742 48.706645 1.687588216 0.084752 44 46 SH21258 21258 YPL079W spliced 43.151269 114.559869 78.855569 1.89683237 -0.21332 44 47 SH16232 16232 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 30.145895 111.494439 30.145895 82.348544 56.2472195 1.750101059 0.071808 44 48 SH4793 4793 snR5 snR5 136 158 28.624123 70.423173 49.523648 1.694812628 0.131114 44 49 SH19789 19789 Negative Control 29.336856 95.464795 62.4008255 1.795190335 -0.19324 44 50 SH13594 13594 MT ATP8/AAP1 5' 27.292009 91.120997 27.292009 64.828988 46.0604985 1.663328634 0.118762 44 51 SH6533 6533 snR46 snR46 156 172 31.497621 79.676346 55.5869835 1.744973107 0.181546 44 52 SH11969 11969 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6731 6751 7881.505412 5763.973437 6822.739425 3.833958785 -0.133022 44 53 SH243 243 Arg3 71-72 + 3' flank 71 3' flank 29.026984 71.631826 50.329405 1.701821796 0.141627 44 54 SH4441 4441 telomerase RNA telomerase 1241 1260 27.311853 69.988664 48.6502585 1.687085152 0.046676 44 55 SH368 368 Asn1 5' flank 32.149133 89.241046 60.6950895 1.783153556 0.033571 44 56 SH16828 16828 YGL178W_7_167356_170575_INTRON_4_643 intron 27.248234 116.362787 27.248234 90.114553 58.6813935 1.768500418 -0.207344 44 57 SH16458 16458 YER074W-A_0_5_307649_INTRON_95_196 3' exon 33.967882 126.058649 33.967882 93.090767 63.5293245 1.802974238 0.008764 44 58 SH15953 15953 YDL130W_4_229906_230527_INTRON_115_415 exon/intron 27.031201 105.307521 27.031201 79.27632 53.1537605 1.725533995 -0.094114 44 59 SH7455 7455 snR69 3' 29.387255 88.01206 58.6996575 1.768635567 -0.0652 44 60 SH13487 13487 MT COX1 intronic 27.207298 95.361301 27.207298 69.154003 48.1806505 1.682872659 0.050802 44 61 SH10351 10351 RUF7 RUF7 366 385 27.273642 76.799895 52.0367685 1.716310319 -0.045515 44 62 SH2909 2909 Pro8 tRNA 66 78 84.028736 140.17268 112.100708 2.049608355 0.059987 44 63 SH14120 14120 MT COB intronic 26.483163 101.585133 26.483163 76.10197 51.2925665 1.71005443 -0.093017 44 64 SH17806 17806 YKL190W_11_82949_83552_INTRON_53_128 3' exon 39.802288 139.17515 39.802288 100.372862 70.087575 1.845641034 -0.012727 44 65 SH2479 2479 Phe5 3' flank 39.773662 92.22584 65.999751 1.819542297 0.161286 44 66 SH8224 8224 snoRNA cluster 3; snR51/3' 26.244247 98.540711 26.244247 73.296464 49.7703555 1.696970743 -0.074426 44 67 SH13103 13103 MT COX1 COX1ai3 28.282848 107.994108 28.282848 80.71126 54.497054 1.736373026 -0.026789 44 68 SH16342 16342 YDR500C_4_1450856_1450201_INTRON_8_396 intron 30.3628 100.211268 30.3628 70.848468 50.605634 1.70419887 0.23741 44 69 SH17626 17626 YJR094W-A_10_608000_608553_INTRON_3_277 intron 28.400618 105.979729 28.400618 78.579111 53.4898645 1.728271498 0.007845 44 70 SH3624 3624 Val1 3' flank 28.622502 88.563161 58.5928315 1.767844486 -0.110147 44 71 SH4816 4816 snR5 3' 28.327844 87.885676 58.10676 1.76422666 -0.112118 44 72 SH6638 6638 snR48 snR48 16 35 34.552005 79.963656 57.2578305 1.757834889 0.299854 44 73 SH20281 20281 YDR450W spliced 25.274706 85.962723 55.6187145 1.745220947 -0.30178 44 74 SH71 71 Ala2 5' flank - tRNA6 5' flank 6 58.169412 140.141709 99.1555605 1.996317074 -0.32507 44 75 SH18325 18325 YML094W_13_82275_82849_INTRON_17_99 5' exon 38.794352 128.50765 38.794352 90.713298 64.753825 1.811265427 0.174858 44 76 SH10008 10008 RUF5-1 3' 28.202908 91.238861 59.7208845 1.776126231 -0.175959 44 77 SH9387 9387 RUF1 RUF1 511 528 27.09645 62.218095 44.6572725 1.649892194 0.146154 44 78 SH14320 14320 MT VAR1 includes 5’ processing site VAR1 25.877488 100.852524 25.877488 75.975036 50.926262 1.7069418 -0.135971 44 79 SH14933 14933 MT tRNA Asn tRNA 30.593721 114.087471 30.593721 84.49375 57.5437355 1.759998051 0.051761 44 80 SH16867 16867 YGL187C_7_150529_149708_INTRON_1_342 intron 37.096247 132.034376 37.096247 95.938129 66.517188 1.822933881 0.022551 44 81 SH21540 21540 copy of SH4150 36.73825 100.297962 68.518106 1.83580535 -0.077095 44 82 SH17773 17773 YKL180W_11_109271_110131_INTRON_310_615 intron 27.705796 111.532098 27.705796 84.826302 56.266049 1.75024642 -0.115418 44 83 SH21191 21191 YOL120C spliced 34.180905 79.684759 56.932832 1.755362787 0.290806 44 84 SH3463 3463 Trp1 3' flank 31.941481 92.93775 62.4396155 1.79546022 -0.04047 44 85 SH1963 1963 Lys2 tRNA 16 28 29.652289 83.668067 56.660178 1.753277935 0.025119 44 86 SH8069 8069 snoRNA cluster 2 snR61 29.813041 113.086153 29.813041 84.273112 57.0430765 1.75620294 0.021209 44 87 SH18048 18048 YLR333C_12_796335_795573_INTRON_1_423 intron 28.252786 119.409993 28.252786 92.157207 60.2049965 1.779632535 -0.189087 44 88 SH14564 14564 MT 21S rRNA 21S rRNA3 28.741436 105.476055 28.741436 77.734619 53.2380275 1.726221956 0.041139 44 89 SH12309 12309 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.920994 126.143996 30.920994 96.223002 63.571998 1.803265861 -0.138765 44 90 SH19286 19286 YPL143W_16_282121_282969_INTRON_20_544 3' exon 34.875654 121.942802 34.875654 88.067148 61.471401 1.788673111 0.143958 44 91 SH7293 7293 snR66 5' 25.15465 65.646844 45.400747 1.657062999 -0.047351 44 92 SH7124 7124 snR63 snR63 126 143 25.985265 64.56963 45.2774475 1.655881936 0.030186 44 93 SH5651 5651 snR34 snR34 176 195 43.204201 73.433231 58.318716 1.765807954 0.696015 44 94 SH8903 8903 LSR1 / U2 RNA U2 1156 1168 41.47361 208.715917 125.0947635 2.09723913 -1.413693 44 95 SH19881 19881 Negative Control 32.989179 102.924785 67.956982 1.832234083 -0.220151 44 96 SH14406 14406 MT 21S rRNA 21S rRNA3 25.924148 108.157103 25.924148 83.232955 54.5785515 1.737022005 -0.221667 44 97 SH8712 8712 LSR1 / U2 RNA U2 201 218 28.592771 72.459041 50.525906 1.70351411 0.101656 44 98 SH18024 18024 YLR306W_12_744151_744851_INTRON_4_137 intron 28.188536 94.940826 28.188536 67.75229 47.970413 1.680973458 0.138684 44 99 SH5082 5082 snR11 snR11 11 28 36.807988 101.984999 69.3964935 1.841337527 -0.10994 44 100 SH12788 12788 MT COX1 COX1ai1 27.48342 103.890722 27.48342 77.407302 52.445361 1.719707079 -0.038966 44 101 SH8666 8666 LSR1 / U2 RNA 5' 22.228008 54.983491 38.6057495 1.586651988 -0.085583 44 102 SH3588 3588 Val1 5' flank 239.617889 566.581142 403.0995155 2.605412276 -1.011296 44 103 SH9182 9182 snR7 U5 RNA U5 181 197 48.002712 78.090063 63.0463875 1.799660207 0.659184 44 104 SH9547 9547 RUF3 RUF3 121 138 64.257291 128.470286 96.3637885 1.983913866 -0.061678 45 2 SH5136 5136 snR11 3' 27.550107 88.076968 57.8135375 1.762029544 -0.163686 45 3 SH21241 21241 YOR312C spliced 48.270543 109.911471 79.091007 1.898127105 -0.031102 45 4 SH3211 3211 Thr1 5' flank 28.889994 91.658279 60.2741365 1.780130997 -0.150838 45 5 SH16030 16030 YDL191W_4_117665_118518_INTRON_4_494 intron 37.280249 140.284177 37.280249 104.003928 70.6420885 1.84906353 -0.139884 45 6 SH18208 18208 YML024W_13_225889_226697_INTRON_4_401 3' exon 41.120743 148.579875 41.120743 108.459132 74.7899375 1.87384317 -0.143634 45 7 SH18013 18013 YLR287C-A_12_713158_712537_INTRON_4_433 intron 26.466784 96.981489 26.466784 71.514705 48.9907445 1.690114039 -0.034551 45 8 SH1720 1720 Leu6 3' flank 30.97939 93.498955 62.2391725 1.79406381 -0.088138 45 9 SH12967 12967 MT COX1 COX1ai2 25.806775 105.995763 25.806775 81.188988 53.4978815 1.728336584 -0.205323 45 10 SH20605 20605 YHR077C spliced 42.304461 119.163306 80.7338835 1.907055844 -0.309946 45 11 SH15228 15228 MT COX3 cox3 27.391304 107.815914 27.391304 81.42461 54.407957 1.735662419 -0.09595 45 12 SH10850 10850 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1136 1156 29.673314 80.807775 55.2405445 1.742257951 0.062441 45 13 SH19406 19406 YPR098C_16_729525_728944_INTRON_48_143 5' exon 26.971509 105.396584 26.971509 79.425075 53.198292 1.725897689 -0.100156 45 14 SH1331 1331 Ile3 tRNA-exon/intron 36 52 28.224616 96.761654 62.493135 1.795832312 -0.265844 45 15 SH989 989 Gly2 5' flank 29.830689 102.325222 66.0779555 1.820056597 -0.294309 45 16 SH4964 4964 snR9 3' 27.931583 103.877575 65.904579 1.81891559 -0.389589 45 17 SH11355 11355 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3661 3674 62.493513 187.704405 125.098959 2.097253696 -0.786921 45 18 SH11669 11669 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5231 5246 52.43364 98.870312 75.651976 1.878820276 0.253697 45 19 SH17727 17727 YKL156W_11_158616_159214_INTRON_4_353 intron 31.232107 125.600163 31.232107 95.368056 63.3000815 1.801404269 -0.112085 45 20 SH5526 5526 snR33 5' 29.854124 90.657596 60.25586 1.779999289 -0.089918 45 21 SH3769 3769 Val4 71-73 + 3' flank 71 25.944722 66.088123 46.0164225 1.662912852 0.003646 45 22 SH14815 14815 "MT tRNAs (Lys, Arg1, Gly)" tRNA / intergenic 42.247559 143.862436 42.247559 102.614877 72.431218 1.859925788 -0.008115 45 23 SH2702 2702 Pro4 3' flank 30.703743 86.906858 58.8053005 1.769416474 0.013004 45 24 SH941 941 Gly1 5' flank 26.378025 70.424911 48.401468 1.684858534 -0.026284 45 25 SH8771 8771 LSR1 / U2 RNA U2 496 508 31.157511 85.206348 58.1819295 1.76478812 0.063209 45 26 SH7512 7512 snR79 5' 33.738144 104.916704 69.327424 1.840905063 -0.240048 45 27 SH4054 4054 SRP RNA SRP RNA 161 180 29.251902 69.675959 49.4639305 1.694288623 0.183129 45 28 SH6063 6063 snR37 snR37 231 250 29.379606 81.134091 55.2568485 1.742386112 0.039663 45 29 SH16037 16037 YDL191W_4_117665_118518_INTRON_4_494 intron 29.513662 118.87546 29.513662 90.361798 59.93773 1.777700291 -0.100214 45 30 SH15265 15265 MT 9S rRNA 9S 27.105525 107.36814 27.105525 81.262615 54.18407 1.733871624 -0.113717 45 31 SH13003 13003 MT COX1 COX1ai2 28.919517 114.605224 28.919517 86.685707 57.802612 1.761947464 -0.063183 45 32 SH11211 11211 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2941 2954 42.114288 105.242198 73.678243 1.867339261 -0.062102 45 33 SH6903 6903 snR56 3' 25.362692 73.637619 49.5001555 1.694606563 -0.144682 45 34 SH6209 6209 snR40 3' 29.122534 76.110807 52.6166705 1.721123363 0.087094 45 35 SH1112 1112 Gly4 tRNA 36 48 475.63822 480.531863 478.0850415 2.679505156 0.128733 45 36 SH3445 3445 Trp1 tRNA 56 73 29.379993 95.310854 62.3454235 1.794804579 -0.188777 45 37 SH17009 17009 YGR148C_7_788173_787307_INTRON_1_392 intron 30.352127 116.247866 30.352127 86.895739 58.623933 1.768074951 -0.002214 45 38 SH7773 7773 snoRNA cluster1 intergenic 33.612197 119.033123 33.612197 86.420926 60.0165615 1.77827111 0.14281 45 39 SH19725 19725 Negative Control 29.654622 83.143631 56.3991265 1.751272378 0.032722 45 40 SH19119 19119 YPL031C_16_493033_492014_INTRON_18_119 intron 29.835026 113.60029 29.835026 84.765264 57.300145 1.758155721 0.013188 45 41 SH11596 11596 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4866 4883 105.425471 124.640585 115.033028 2.060822552 0.518882 45 42 SH9424 9424 RUF2 5' 28.873571 70.355634 49.6146025 1.695609516 0.148744 45 43 SH2204 2204 Met2 3' flank 28.444354 78.113681 53.2790175 1.726556208 0.016692 45 44 SH7478 7478 snR71 snR71 6 23 39.505414 96.644457 68.0749355 1.832987239 0.05919 45 45 SH2795 2795 Pro6 tRNA-intron/exon 66 78 92.780135 169.415688 131.0979115 2.117595773 -0.166034 45 46 SH20065 20065 YBR230C spliced 30.306756 91.656978 60.981867 1.785200716 -0.086738 45 47 SH13336 13336 MT COX1 COX1-ai5a 26.109046 92.433218 26.109046 67.324172 46.716609 1.669471311 -0.002815 45 48 SH8757 8757 LSR1 / U2 RNA U2 426 443 35.490532 95.592032 65.541282 1.816514932 -0.007598 45 49 SH12624 12624 MT_15S MT_15S 26.822927 101.356994 26.822927 75.534067 51.178497 1.709087527 -0.06128 45 50 SH1604 1604 Leu4 3' flank 27.003785 74.428433 50.716109 1.705145927 -0.034189 45 51 SH4790 4790 snR5 snR5 121 140 26.731481 79.260551 52.996016 1.724243223 -0.114923 45 52 SH18329 18329 YML094W_13_82275_82849_INTRON_17_99 intron 42.681453 141.506874 42.681453 99.825421 71.253437 1.852805818 0.056542 45 53 SH8853 8853 LSR1 / U2 RNA U2 906 922 252.03656 323.574275 287.8054175 2.459098965 -0.041153 45 54 SH5039 5039 snR10 snR10 226 244 29.688884 95.150946 62.419915 1.795323173 -0.172182 45 55 SH14454 14454 MT 21S rRNA 21S rRNA3 29.834835 118.783562 29.834835 89.948727 59.891781 1.777367228 -0.07864 45 56 SH8940 8940 snR17a / U3a 5' - 3 -14 3 29.640663 76.712664 53.1766635 1.725721085 0.112436 45 57 SH8158 8158 snoRNA cluster 3; snR70 29.546206 98.155407 29.546206 69.609201 49.5777035 1.695286406 0.203328 45 58 SH8485 8485 snR19 / U1 RNA 5' 29.617991 81.92231 55.7701505 1.746401816 0.04521 45 59 SH17681 17681 YKL006W_11_431544_432358_INTRON_130_527 intron 32.001592 122.022389 32.001592 91.020797 61.5111945 1.788954161 -0.003134 45 60 SH19464 19464 CYC1 29.647238 78.141621 53.8944295 1.731543879 0.094375 45 61 SH2951 2951 Ser1 5' flank - tRNA5 5 29.442441 99.883883 64.663162 1.810656938 -0.258434 45 62 SH8952 8952 snR17a / U3a U3a 46 65 35.99499 100.662623 68.3288065 1.834603835 -0.101397 45 63 SH3119 3119 Ser4 tRNA 1 13 38535.00718 20721.78327 29628.39522 4.471708129 -0.084965 45 64 SH5715 5715 snR34 snR34 496 513 28.384086 76.986359 52.6852225 1.721688819 0.02725 45 65 SH394 394 Asn1 51-66 51 66 55.062964 109.664096 82.36353 1.915734952 0.091661 45 66 SH10211 10211 RUF6 RUF6 901 915 30.5265 83.934741 57.2306205 1.757628455 0.059085 45 67 SH21693 21693 copy of SH10453 30.155734 93.152843 61.6542885 1.78996329 -0.118468 45 68 SH2848 2848 Pro7 tRNA-intron 46 62 41.209567 95.497148 68.3533575 1.834759852 0.118571 45 69 SH1389 1389 Leu1 tRNA 16 28 30.519022 89.37414 59.946581 1.777764419 -0.03838 45 70 SH17786 17786 YKL180W_11_109271_110131_INTRON_310_615 3' exon 26.298053 95.323225 26.298053 70.025172 48.1616125 1.682701019 -0.02667 45 71 SH3871 3871 RNaseP RNaseP 321 335 34.69335 92.250245 63.4717975 1.802580798 0.045245 45 72 SH10792 10792 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 846 866 31.719738 73.583739 52.6517385 1.721412716 0.281861 45 73 SH20718 20718 YJL136C spliced 31.633358 87.237434 59.435396 1.774045161 0.047052 45 74 SH17588 17588 YJL191W_10_73786_74610_INTRON_11_418 intron 27.330952 109.661686 27.330952 83.330734 55.330843 1.742967287 -0.123274 45 75 SH17962 17962 YLR185W_12_522665_523290_INTRON_8_366 intron 24.845755 113.277704 24.845755 89.431949 57.138852 1.756931511 -0.373644 45 76 SH9211 9211 snR6 / U6 RNA 5' 39.998802 90.034865 65.0168335 1.813025814 0.215523 45 77 SH19451 19451 CYC1 34.188364 92.181104 63.184734 1.800612162 0.034235 45 78 SH19140 19140 YPL075W_16_412249_415357_INTRON_9_759 intron 28.466076 99.227665 28.466076 71.761589 50.1138325 1.699957617 0.102385 45 79 SH16745 16745 YGL076C_7_365994_364333_INTRON_565_1032 intron 26.42246 93.713556 26.42246 68.291096 47.356778 1.675382147 0.006481 45 80 SH7700 7700 snoRNA cluster1 intergenic 25.94064 98.86716 25.94064 73.92652 49.93358 1.698392704 -0.105048 45 81 SH20333 20333 YER074W spliced 31.827722 82.921379 57.3745505 1.758719296 0.133745 45 82 SH20276 20276 YDR447C spliced 35.775636 96.861988 66.318812 1.821636738 -0.027559 45 83 SH10023 10023 RUF6 5' 25.006751 77.548964 51.2778575 1.709929871 -0.221562 45 84 SH6183 6183 snR40 5' 27.092124 75.981925 51.5370245 1.712119341 -0.047721 45 85 SH9685 9685 RUF4 RUF4 201 216 33.357954 101.065691 67.2118225 1.827445672 -0.173635 45 86 SH21915 21915 copy of SH19998 44.761632 98.902691 71.8321615 1.856318935 0.116164 45 87 SH21802 21802 copy of SH15072 26.929731 76.455347 51.692539 1.713427864 -0.06526 45 88 SH9905 9905 RUF5-1 RUF5-1 331 348 28.671801 68.018207 48.345004 1.684351601 0.167661 45 89 SH14981 14981 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.539039 110.229416 28.539039 82.690377 55.614708 1.745189661 -0.034054 45 90 SH19679 19679 SIR1 2.4 30.039289 85.642215 57.840752 1.762233931 0.006398 45 91 SH9801 9801 RUF4 781-788 + 3' 781 29.022095 136.77203 82.8970625 1.918539141 -0.910836 45 92 SH15999 15999 YDL137W_4_216158_217074_INTRON_1_332 intron 49.379347 191.965136 49.379347 143.585789 96.482568 1.984448854 -0.533625 45 93 SH6494 6494 snR46 5' 25.699869 75.243355 50.471612 1.703047176 -0.139948 45 94 SH12110 12110 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7436 7451 53.42563 106.562368 79.993999 1.903057408 0.121173 45 95 SH14066 14066 MT COB Cytbi4 25.503437 95.13566 25.503437 70.632223 48.06783 1.681854517 -0.09404 45 96 SH7452 7452 snR69 3' 28.666631 73.601318 51.1339745 1.708709551 0.090933 45 97 SH9091 9091 snR14 / U4 RNA U4 71 88 33.202086 88.437967 60.8200265 1.784046605 0.090689 45 98 SH3343 3343 Thr3 61-72 + 3' flank 61 54.503384 124.001264 89.252324 1.950619533 -0.15597 45 99 SH14603 14603 MT 21S rRNA Sce1 endonuc 38.904112 124.998302 38.904112 87.09419 62.999151 1.799334697 0.259949 45 100 SH4923 4923 snR9 snR9 21 40 25.218853 67.522872 46.3708625 1.666245174 -0.07122 45 101 SH11805 11805 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5911 5924 26.967421 81.004916 53.9861685 1.732282506 -0.120161 45 102 SH10758 10758 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 676 691 1486.773043 3117.614995 2302.194019 3.362141921 -1.332595 45 103 SH3912 3912 RNase MRP 5' 358.189062 787.748801 572.9689315 2.758131074 -1.027677 45 104 SH14778 14778 MT ORF11; tRNA Leu; tRNA Gln tRNA Gln 4.256914 14.494733 4.256914 11.237819 7.7473665 0.889154101 0.391867 46 2 SH20564 20564 YHR001W-A spliced 30.053977 77.84163 53.9478035 1.731973767 0.1239 46 3 SH5720 5720 snR34 snR34 521 539 30.15449 100.12262 65.138555 1.81383812 -0.240893 46 4 SH10202 10202 RUF6 RUF6 856 880 25.893174 76.461998 51.177586 1.709079797 -0.140934 46 5 SH5899 5899 snR36 5' 25.583545 70.016881 47.800213 1.679429832 -0.079604 46 6 SH13614 13614 MT ATP6 5' 24.898641 93.495797 24.898641 69.597156 47.2478985 1.674382497 -0.125854 46 7 SH4079 4079 SRP RNA SRP RNA 286 300 39.078144 97.34998 68.214062 1.833873912 0.035241 46 8 SH18281 18281 YML067C_13_140214_139063_INTRON_32_124 5' exon 28.226265 110.723758 28.226265 83.497493 55.861879 1.74711554 -0.064542 46 9 SH19650 19650 SIR1 2.2 30.224086 76.888623 53.5563545 1.728811008 0.146868 46 10 SH1687 1687 Leu6 tRNA 1 13 119.449451 231.033209 175.24133 2.243636541 -0.399294 46 11 SH4549 4549 U3b (snR17b) U3b 301 323 24.36918 71.341185 47.8551825 1.679928977 -0.191181 46 12 SH2771 2771 Pro6 5' flank 31.009887 95.965916 63.4879015 1.802690972 -0.130879 46 13 SH10794 10794 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 856 874 26.850682 77.530907 52.1907945 1.717593908 -0.084449 46 14 SH8522 8522 snR19 / U1 RNA U1 106 123 30.950611 85.853646 58.4021285 1.766428676 0.042584 46 15 SH20350 20350 YER102W spliced 34.097407 98.822752 66.4600795 1.822560856 -0.109321 46 16 SH1443 1443 Leu2 5' flank - tRNA5 5 28.984503 100.163551 64.574027 1.810057871 -0.28374 46 17 SH98 98 Ala2 3' flank 33.675867 81.316208 57.4960375 1.759637915 0.23953 46 18 SH1068 1068 Gly3 3' flank 25.369043 58.820013 42.094528 1.624225644 0.080102 46 19 SH3687 3687 Val3 5' flank 25.956062 80.208211 53.0821365 1.724948394 -0.182287 46 20 SH20389 20389 YFL034C-B spliced 31.01446 88.696166 59.855313 1.777102706 -0.005047 46 21 SH17197 17197 YHR021C_8_148660_147862_INTRON_4_553 intron 28.959515 115.841998 28.959515 87.882483 58.420999 1.766568979 -0.082544 46 22 SH8320 8320 snoRNA cluster4 intergenic 26.551694 91.173588 26.551694 65.621894 46.086794 1.663576498 0.054136 46 23 SH19971 19971 YBL072C spliced 31.036644 88.574917 59.8057805 1.776743163 -0.001974 46 24 SH18056 18056 YLR333C_12_796335_795573_INTRON_1_423 intron 26.594472 106.648651 26.594472 81.054179 53.8243255 1.730978596 -0.147009 46 25 SH19405 19405 YPR098C_16_729525_728944_INTRON_48_143 5' exon 29.033016 112.697927 29.033016 84.664911 56.8489635 1.754722551 -0.025346 46 26 SH1796 1796 Leu8 tRNA 6 18 2229.158223 3432.508111 2830.833167 3.451914275 -0.956383 46 27 SH2384 2384 Phe4 5' flank 28.921093 85.126329 57.023711 1.756055477 -0.038066 46 28 SH11849 11849 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6131 6149 2627.726318 2412.693272 2520.209795 3.401436695 -0.184262 46 29 SH13252 13252 MT COX1 COX1-ai4 26.954968 106.937809 26.954968 80.982841 53.9689045 1.732143603 -0.120759 46 30 SH7295 7295 snR66 5' 67.540681 123.150925 95.345803 1.979301581 0.067831 46 31 SH3106 3106 Ser4 5' flank 31.512356 94.999496 63.255926 1.801101218 -0.096587 46 32 SH13770 13770 MT COB intronic 26.180882 94.843671 26.180882 69.662789 47.9218355 1.680533444 -0.030291 46 33 SH350 350 Arg5 3' flank 243.898694 313.770416 278.834555 2.445346593 -0.032213 46 34 SH10641 10641 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 91 109 51.084818 125.600018 88.342418 1.946169282 -0.242242 46 35 SH7622 7622 snR189 181-189 + 3' 181 35.43995 99.347345 67.3936475 1.828618962 -0.087064 46 36 SH19613 19613 RNA14 1.1 29.790897 83.484045 56.637471 1.753103853 0.034767 46 37 SH8509 8509 snR19 / U1 RNA U1 41 60 28.5662 72.070503 50.3183515 1.701726405 0.105025 46 38 SH15195 15195 MT COX3 cox3 28.082135 110.28099 28.082135 83.198855 55.640495 1.745390985 -0.070601 46 39 SH14259 14259 MT VAR1 includes 5’ processing site 5' 27.232816 96.457351 27.232816 70.224535 48.7286755 1.687784607 0.037867 46 40 SH21677 21677 copy of SH9840 27.236011 79.919637 53.577824 1.728985071 -0.087984 46 41 SH15929 15929 YDL108W_4_267697_268698_INTRON_29_109 intron/exon 31.482867 128.527504 31.482867 98.044637 64.763752 1.811332001 -0.161457 46 42 SH8661 8661 LSR1 / U2 RNA 5' 28.649718 75.199452 51.924585 1.715373034 0.068314 46 43 SH1077 1077 Gly3 3' flank 30.65182 95.46884 63.06033 1.799756239 -0.13462 46 44 SH12591 12591 MT_15S MT_15S 28.477211 107.275943 28.477211 79.798732 54.1379715 1.733501979 -0.002501 46 45 SH18183 18183 YLR448W_12_1028848_1029762_INTRON_16_399 3' exon 28.67326 106.475898 28.67326 78.802638 53.737949 1.730281087 0.023002 46 46 SH10228 10228 RUF6 RUF6 986 1005 28.758875 72.228109 50.493492 1.703235406 0.115843 46 47 SH11122 11122 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2496 2511 31.01239 84.497569 57.7549795 1.761589434 0.069883 46 48 SH15565 15565 YBR084C-A_2_415219_414144_INTRON_3_508 intron 28.732992 115.128209 28.732992 87.395217 58.0641045 1.763907732 -0.084454 46 49 SH11192 11192 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2846 2863 36.795821 94.979169 65.887495 1.818802996 0.036335 46 50 SH12650 12650 MT_15S MT_15S 33.57595 127.571482 33.57595 94.995532 64.285741 1.808114654 -0.042286 46 51 SH14535 14535 MT 21S rRNA 21S rRNA3 26.833273 104.583243 26.833273 78.74997 52.7916215 1.722565002 -0.101291 46 52 SH3539 3539 Tyr2 5' flank 31.456155 86.385926 58.9210405 1.770270408 0.054707 46 53 SH2036 2036 Lys3 3' flank 29.442417 89.324468 59.3834425 1.77366537 -0.085587 46 54 SH15697 15697 YBR220C_2_663261_662457_INTRON_302_722 intron 27.455482 97.4174 27.455482 70.961918 49.2087 1.692041892 0.043525 46 55 SH16622 16622 YFL039C_6_54695_53260_INTRON_11_318 intron 29.72889 122.116834 29.72889 93.387944 61.558417 1.789287443 -0.141447 46 56 SH867 867 Glu2 3' flank 29.447371 80.854874 55.1511225 1.741554356 0.047456 46 57 SH2966 2966 Ser1 tRNA 61 75 149.638327 222.674209 186.156268 2.269877664 -0.066974 46 58 SH14754 14754 MT ORF11; tRNA Leu; tRNA Gln ORF11 27.317838 94.405467 27.317838 68.087629 47.7027335 1.678543266 0.073523 46 59 SH16420 16420 YER056C-A_5_270183_269421_INTRON_38_434 3' exon 29.702232 126.728993 29.702232 98.026761 63.8644965 1.805259493 -0.217643 46 60 SH10473 10473 RUF8 RUF8 291 307 30.684375 95.984513 63.334444 1.801639962 -0.141533 46 61 SH19201 19201 YPL081W_16_404945_406039_INTRON_8_508 intron 26.765789 102.548305 26.765789 76.782516 51.7741525 1.714112999 -0.081117 46 62 SH14911 14911 MT tRNA Tyr 5' 26.261363 97.474573 26.261363 72.21321 49.2372865 1.692294111 -0.058883 46 63 SH10790 10790 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 836 854 28.386263 73.340297 50.86328 1.706404363 0.075972 46 64 SH16366 16366 YEL012W_5_131772_132551_INTRON_6_128 intron/exon 28.575407 110.906327 28.575407 83.33092 55.9531635 1.747824646 -0.03938 46 65 SH13187 13187 MT COX1 Exon4 26.337737 94.805496 26.337737 69.467759 47.902748 1.680360428 -0.016097 46 66 SH18398 18398 YMR125W_13_517538_520445_INTRON_26_347 intron 28.248911 117.894214 28.248911 90.645303 59.447107 1.774130724 -0.16368 46 67 SH16276 16276 YDR447C_4_1355542_1354818_INTRON_4_317 intron 25.595929 99.336703 25.595929 74.740774 50.1683515 1.700429831 -0.141322 46 68 SH17621 17621 YJR094W-A_10_608000_608553_INTRON_3_277 5' exon 29.865666 119.284836 29.865666 90.41917 60.142418 1.779180885 -0.085327 46 69 SH19885 19885 Positive Control 1 28.123075 75.680371 51.901723 1.715181776 0.026974 46 70 SH20224 20224 YDR129C spliced 26.085751 75.833156 50.9594535 1.707224762 -0.11874 46 71 SH780 780 Glu1 5' flank 25.465141 78.311412 51.8882765 1.715069246 -0.195969 46 72 SH10750 10750 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 636 653 30.045651 87.330122 58.6878865 1.76854847 -0.023511 46 73 SH7327 7327 snR66 3' 33.439304 82.809212 58.124258 1.764357422 0.201949 46 74 SH21149 21149 YNL246W spliced 27.691625 83.022938 55.3572815 1.743174755 -0.094867 46 75 SH11537 11537 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4571 4584 189.325733 211.448311 200.387022 2.301869591 0.304817 46 76 SH9571 9571 RUF3 RUF3 241 258 27.883476 74.193056 51.038266 1.707895911 0.030587 46 77 SH11487 11487 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4321 4336 67.039588 118.758528 92.899058 1.96801131 0.129171 46 78 SH11413 11413 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3951 3967 423.231363 305.223898 364.2276305 2.561372889 0.710275 46 79 SH14218 14218 MT ATP9 ATP9 26.755944 103.045368 26.755944 77.289424 52.022684 1.716192755 -0.08814 46 80 SH11516 11516 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4466 4484 35.193137 92.743184 63.9681605 1.805963862 0.046648 46 81 SH1801 1801 Leu8 tRNA-exon/intron 31 48 27.520253 67.430771 47.475512 1.676469657 0.097042 46 82 SH18887 18887 YOL047C_15_242745_241612_INTRON_244_306 intron/exon 33.247984 129.779012 33.247984 97.531028 65.389506 1.815508056 -0.104165 46 83 SH12810 12810 MT COX1 COX1ai1 24.473176 92.812189 24.473176 69.339013 46.9060945 1.671229274 -0.154293 46 84 SH19341 19341 YPL241C_16_96258_95372_INTRON_26_105 3' exon 30.739645 118.842359 30.739645 89.102714 59.9211795 1.777580354 -0.024034 46 85 SH21844 21844 copy of SH17379 26.53196 69.517274 48.024617 1.68146391 -0.002631 46 86 SH603 603 Gln1 tRNA 56 68 3364.593277 2123.61465 2744.103964 3.438400561 0.339841 46 87 SH13847 13847 MT COB Cytbi2 28.070661 101.351202 28.070661 74.280541 51.175601 1.709062952 0.042151 46 88 SH4239 4239 telomerase RNA telomerase 231 246 30.955136 84.709932 57.832534 1.762172222 0.063526 46 89 SH19301 19301 YPL198W_16_173151_174701_INTRON_12_420 intron 28.443294 98.625779 28.443294 71.182485 49.8128895 1.697341735 0.108618 46 90 SH9306 9306 RUF1 RUF1 106 123 29.744441 96.310803 63.027622 1.799530922 -0.188422 46 91 SH12496 12496 MT_tRNA Pro 5' / tRNA 26.75448 102.789629 26.75448 77.035149 51.8948145 1.715123964 -0.085083 46 92 SH11244 11244 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3106 3123 10655.7701 8825.743681 9740.756892 3.988592704 -0.414286 46 93 SH10058 10058 RUF6 RUF6 136 158 27.129451 81.274014 54.2017325 1.734013169 -0.112195 46 94 SH670 670 Gln2 3' flank 30.313699 103.132938 66.7233185 1.824277638 -0.296546 46 95 SH1866 1866 Leu9 tRNA 71 85 1642.256952 1986.164303 1814.210628 3.258687707 -0.491645 46 96 SH5446 5446 snR31 3' 29.322621 83.231767 56.277194 1.750332435 0.010448 46 97 SH1705 1705 Leu6 3' flank 30.184603 88.893046 59.5388245 1.774800256 -0.044777 46 98 SH1502 1502 Leu3 5' flank 33.005026 81.987117 57.4960715 1.759638172 0.199888 46 99 SH21664 21664 copy of SH9399 28.025878 76.674968 52.350423 1.718920195 0.007378 46 100 SH17025 17025 YGR148C_7_788173_787307_INTRON_1_392 intron/exon 27.473218 95.533145 27.473218 69.059927 48.2665725 1.68364646 0.070839 46 101 SH8924 8924 snR17a / U3a 5' 36.580328 128.681795 82.6310615 1.917143332 -0.590693 46 102 SH12831 12831 MT COX1 COX1ai1 1784.921984 5563.362269 1784.921984 3779.440285 2782.181135 3.444385401 -1.398365 46 103 SH1279 1279 Ile2 tRNA-intron/exon 91 105 859.318363 1992.665323 1425.991843 3.154117041 -1.349738 46 104 SH19549 19549 CBP1 2.2 5.265594 14.658661 9.9621275 0.998352096 0.25814 47 2 SH2716 2716 Pro5 5' flank 29.256821 81.385801 55.321311 1.742892463 0.028671 47 3 SH15294 15294 MT 9S rRNA 9S / 3' 27.112891 102.6179 27.112891 76.505009 51.80895 1.714404791 -0.052829 47 4 SH14018 14018 MT COB Exon4 27.109741 101.419051 27.109741 75.30931 51.2095255 1.709350752 -0.037937 47 5 SH11271 11271 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3241 3259 27.714373 76.98227 52.3483215 1.718902761 -0.017686 47 6 SH7199 7199 snR64 snR64 61 78 36.689008 90.058667 63.3738375 1.801910006 0.141873 47 7 SH19444 19444 YPR187W_16_911252_911795_INTRON_21_96 3' exon 24.723854 106.16471 24.723854 82.440856 53.582355 1.729021797 -0.302172 47 8 SH21888 21888 copy of SH18603 47.135361 105.546649 76.341005 1.882757873 0.028579 47 9 SH16016 16016 YDL137W_4_216158_217074_INTRON_1_332 3' exon 23.612709 94.500894 23.612709 71.888185 47.750447 1.678977441 -0.257886 47 10 SH7197 7197 snR64 snR64 51 68 33.921875 91.882265 62.90207 1.798664938 0.03414 47 11 SH11597 11597 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4871 4886 7535.372984 3475.145035 5505.25901 3.740777756 0.60967 47 12 SH17234 17234 YHR077C_8_255757_252375_INTRON_7_119 intron/exon 52.190228 147.096288 52.190228 95.90606 74.048144 1.869514178 0.310185 47 13 SH8958 8958 snR17a / U3a U3a 76 94 26.847423 65.684625 46.266024 1.665262179 0.07455 47 14 SH19538 19538 CBP1 1.2 31.529778 82.472393 57.0010855 1.755883126 0.129556 47 15 SH7563 7563 snR79 3' 31.843823 87.405721 59.624772 1.775426731 0.052946 47 16 SH21764 21764 copy of SH13599 25.690123 62.999024 44.3445735 1.646840482 0.033859 47 17 SH2794 2794 Pro6 tRNA-intron/exon 61 75 123.366879 159.277003 141.321941 2.150209594 0.270546 47 18 SH2417 2417 Phe4 3' flank 28.876349 80.67882 54.7775845 1.738602877 0.012742 47 19 SH6341 6341 snR43 5' 29.381931 88.153628 58.7677795 1.769139282 -0.067928 47 20 SH5372 5372 snR31 5' 26.229605 69.203816 47.7167105 1.678670497 -0.020367 47 21 SH17967 17967 YLR185W_12_522665_523290_INTRON_8_366 intron 29.693575 120.936567 29.693575 92.242992 60.9682835 1.785103968 -0.123955 47 22 SH4601 4601 snR3 5' 52.611092 107.72066 80.165876 1.903989543 0.085913 47 23 SH8204 8204 snoRNA cluster 3; intergenic/snR51 29.081162 106.177026 29.081162 78.095864 53.588513 1.729071706 0.058638 47 24 SH20048 20048 YBR191W spliced 35.950343 108.97484 72.4625915 1.860113862 -0.266072 47 25 SH9132 9132 snR7 U5 RNA 5' 26.805246 66.667243 46.7362445 1.669653812 0.057273 47 26 SH16934 16934 YGR027C_7_534779_534126_INTRON_1_312 exon/intron 29.028605 97.833156 29.028605 69.804551 49.416578 1.693872668 0.166603 47 27 SH19144 19144 YPL075W_16_412249_415357_INTRON_9_759 intron 28.691224 128.330082 28.691224 100.638858 64.665041 1.810669557 -0.304675 47 28 SH15519 15519 YBR048W_2_332790_333771_INTRON_46_556 intron 40.211426 138.57091 40.211426 99.359484 69.785455 1.843764914 0.016618 47 29 SH6700 6700 snR49 snR49 26 41 33.754377 82.652405 58.203391 1.764948288 0.217433 47 30 SH12186 12186 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7816 7834 29.556651 88.499905 59.028278 1.771060114 -0.066058 47 31 SH16926 16926 YGR001C_7_498029_497128_INTRON_36_97 exon/intron 27.153615 103.27847 27.153615 77.124855 52.139235 1.717164655 -0.058053 47 32 SH8734 8734 LSR1 / U2 RNA U2 311 333 28.966869 75.175415 52.071142 1.716597103 0.089377 47 33 SH3617 3617 Val1 3' flank 28.248107 73.618121 50.933114 1.707000229 0.062993 47 34 SH19501 19501 YPT1 27.745373 84.747865 56.246619 1.750096422 -0.111802 47 35 SH18263 18263 YML056C_13_164176_162194_INTRON_461_868 intron 27.841433 120.812557 27.841433 93.971124 60.9062785 1.784662064 -0.23887 47 36 SH14563 14563 MT 21S rRNA 21S rRNA3 32.972573 126.22629 32.972573 94.253717 63.613145 1.803546867 -0.041866 47 37 SH6972 6972 snR60 5' 29.10531 72.63493 50.87012 1.706462762 0.132781 47 38 SH17265 17265 YHR123W_8_354817_356083_INTRON_51_141 5' exon 26.976708 94.71425 26.976708 68.737542 47.857125 1.679946605 0.040207 47 39 SH7130 7130 snR63 snR63 156 170 36.029031 97.277803 66.653417 1.823822419 -0.030225 47 40 SH9627 9627 RUF4 5' 26.578149 77.108687 51.843418 1.714693627 -0.098733 47 41 SH13115 13115 MT COX1 COX1ai3 26.270848 98.115821 26.270848 72.844973 49.5579105 1.695112987 -0.066546 47 42 SH20493 20493 YGL251C spliced 30.503047 69.041833 49.77244 1.696988932 0.271955 47 43 SH18164 18164 YLR448W_12_1028848_1029762_INTRON_16_399 intron 32.936385 132.44974 32.936385 100.513355 66.72487 1.824287736 -0.173377 47 44 SH14899 14899 MT tRNA Ile tRNA 28.845659 117.042394 28.845659 89.196735 59.021197 1.771008013 -0.11078 47 45 SH18096 18096 YLR367W_12_855877_857316_INTRON_698_1180 intron 29.154303 117.941219 29.154303 89.786916 59.4706095 1.77430239 -0.106737 47 46 SH1547 1547 Leu4 5' flank 29.087311 86.625255 57.856283 1.762350529 -0.054361 47 47 SH7588 7588 snR189 snR189 11 27 31.162292 85.143757 58.1530245 1.764572307 0.064551 47 48 SH9594 9594 RUF3 RUF3 356 373 26.483292 67.74712 47.115206 1.673161094 0.018584 47 49 SH12299 12299 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.700913 117.402374 28.700913 89.701461 59.201187 1.772330415 -0.126242 47 50 SH16272 16272 YDR447C_4_1355542_1354818_INTRON_4_317 intron 33.49105 118.10781 33.49105 85.61676 59.553905 1.774910244 0.15244 47 51 SH1486 1486 Leu3 5' flank 29.403425 71.472414 50.4379195 1.702757164 0.168136 47 52 SH7285 7285 snR66 5' 29.783735 84.589589 57.186662 1.757294747 0.014094 47 53 SH12224 12224 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.349737 100.452563 32.349737 69.102826 50.7262815 1.705233027 0.381821 47 54 SH4319 4319 telomerase RNA telomerase 631 645 32.352262 92.539384 62.445823 1.795503394 -0.020825 47 55 SH10799 10799 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS/18S 881 901 27.292625 70.944889 49.118757 1.691247368 0.032298 47 56 SH21511 21511 copy of SH2856 37.305219 90.632157 63.968688 1.805967443 0.14322 47 57 SH13070 13070 MT COX1 Exon3 31.427846 104.04792 31.427846 73.620074 52.52396 1.720357462 0.263948 47 58 SH13729 13729 MT COB Exon1 27.072163 94.662837 27.072163 68.590674 47.8314185 1.679713261 0.049062 47 59 SH11632 11632 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5046 5061 34.241717 87.415479 60.828598 1.784107807 0.143361 47 60 SH12522 12522 MT_ORF6 + ORF7 (hypothetical) ORF6/7 26.983565 95.829091 26.983565 69.845526 48.4145455 1.684975859 0.025352 47 61 SH6909 6909 snR58 5' 30.987183 93.800646 62.3939145 1.795142233 -0.092785 47 62 SH8921 8921 LSR1 / U2 RNA 3' 49.961742 106.952174 78.456958 1.894631465 0.054029 47 63 SH19072 19072 YOR293W_15_867094_867848_INTRON_53_489 intron 29.144056 100.230545 29.144056 72.086489 50.6152725 1.704281579 0.142876 47 64 SH11428 11428 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4026 4039 30991.10569 15356.749 23173.92734 4.364999641 0.103427 47 65 SH9068 9068 snR14 / U4 RNA 5' 28.302589 73.812556 51.0575725 1.708060163 0.063983 47 66 SH9926 9926 RUF5-1 RUF5-1 436 456 28.017014 81.073721 54.5453675 1.736757872 -0.049069 47 67 SH2505 2505 Pro1 tRNA 16 32 47.624413 97.601606 72.6130095 1.861014437 0.196159 47 68 SH15356 15356 YBL026W_2_170585_171000_INTRON_55_182 intron 29.648456 109.466872 29.648456 80.818416 55.233436 1.742202061 0.06073 47 69 SH8887 8887 LSR1 / U2 RNA U2 1076 1093 27.742159 81.997716 54.8699375 1.739334466 -0.078991 47 70 SH5121 5121 snR11 snR11 206 220 30.024836 88.639208 59.332022 1.773289149 -0.047456 47 71 SH12261 12261 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.477571 116.813146 31.477571 86.335575 58.906573 1.770163758 0.05652 47 72 SH3877 3877 RNaseP RNaseP 351 366 37.004941 86.938054 61.9714975 1.792191991 0.220814 47 73 SH1435 1435 Leu2 5' flank 31.009056 84.83689 57.922973 1.762850845 0.063539 47 74 SH1760 1760 Leu7 3' flank 25.641825 80.157214 52.8995195 1.723451727 -0.205008 47 75 SH21405 21405 Pro8 spliced 90.048084 165.047066 127.547575 2.105672206 -0.154294 47 76 SH16538 16538 YER131W_5_423587_424307_INTRON_1_361 intron 26.256566 95.060188 26.256566 69.803622 48.030094 1.681513437 -0.026669 47 77 SH5674 5674 snR34 snR34 291 307 31.10212 74.371655 52.7368875 1.722114494 0.234148 47 78 SH13855 13855 MT COB Cytbi2 29.303716 113.323117 29.303716 85.019401 57.1615585 1.757104061 -0.015493 47 79 SH12052 12052 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7146 7159 31.707797 91.421753 61.564775 1.789332297 -0.022277 47 80 SH21496 21496 copy of SH2289 28.769424 79.01188 53.890652 1.731513438 0.026656 47 81 SH19269 19269 YPL143W_16_282121_282969_INTRON_20_544 intron 29.94313 121.377365 29.94313 92.434235 61.1886825 1.786671102 -0.115957 47 82 SH19967 19967 YBL072C spliced 77.067716 120.261073 98.6643945 1.994160455 0.24804 47 83 SH8438 8438 snoRNA cluster 5 intergenic/snR128 49.347273 147.680022 49.347273 99.332749 74.340011 1.871222621 0.190957 47 84 SH2942 2942 Ser1 5' flank 25.572218 74.911503 50.2418605 1.701065713 -0.145296 47 85 SH11972 11972 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6746 6764 160.616816 185.533716 173.075266 2.238235008 0.325395 47 86 SH10601 10601 RUF8 RUF8 931 947 29.041175 79.238853 54.140014 1.733518364 0.041498 47 87 SH927 927 Glu3 3' flank 30.307961 87.009925 58.658943 1.768334233 -0.006195 47 88 SH5432 5432 snR31 3' 28.697222 85.209681 56.9534515 1.755520048 -0.053687 47 89 SH14190 14190 MT COB Exon6 26.162573 94.078165 26.162573 68.915592 47.5390825 1.677050796 -0.02129 47 90 SH961 961 Gly1 tRNA 56 68 38.357663 100.580695 69.469179 1.841792166 -0.047411 47 91 SH15736 15736 YBR230C_2_680008_679507_INTRON_12_108 3' exon 33.193984 123.791564 33.193984 91.59758 62.395782 1.795155232 0.021901 47 92 SH17795 17795 YKL186C_11_93537_92746_INTRON_71_233 intron 31.471018 123.388426 31.471018 92.917408 62.194213 1.793749977 -0.057413 47 93 SH9620 9620 RUF3 3' 27.001943 74.737297 50.86962 1.706458493 -0.038294 47 94 SH5515 5515 snR32 3' 26.66878 64.799127 45.7339535 1.660238746 0.075112 47 95 SH19878 19878 Negative Control 29.513393 84.279491 56.896442 1.755085109 0.007572 47 96 SH17676 17676 YKL006W_11_431544_432358_INTRON_130_527 5' exon 27.400254 92.725404 27.400254 66.32515 46.862702 1.670827325 0.10449 47 97 SH19454 19454 CYC1 29.578315 69.757443 49.667879 1.696075614 0.203378 47 98 SH5118 5118 snR11 snR11 191 207 29.1293 74.348042 51.738671 1.713815269 0.110993 47 99 SH4958 4958 snR9 3' 30.805549 79.55378 55.1796645 1.741779056 0.148656 47 100 SH1364 1364 Ile3 3' flank 29.764912 63.382025 46.5734685 1.668138583 0.307459 47 101 SH21635 21635 copy of SH8140 296.265703 546.561466 421.4135845 2.624708531 -0.682854 47 102 SH13498 13498 MT COX1 intronic 319.412529 920.198978 319.412529 601.786449 460.599489 2.663323452 -0.741741 47 103 SH8180 8180 snoRNA cluster 3; snR70 165.348674 508.918298 165.348674 344.569624 254.959149 2.406470601 -0.670823 47 104 SH661 661 Gln2 3' flank 6.031506 18.310567 12.1710365 1.085327565 0.09109 48 2 SH5655 5655 snR34 snR34 196 218 29.72086 73.995318 51.858089 1.714816509 0.153635 48 3 SH6255 6255 snR42 snR42 56 77 27.441089 76.653761 52.047425 1.716399248 -0.032076 48 4 SH13411 13411 MT COX1 intronic 28.480801 109.730828 28.480801 82.250027 55.365414 1.743238552 -0.032556 48 5 SH12419 12419 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.127374 104.582357 29.127374 76.454983 52.7911785 1.722561357 0.08289 48 6 SH6477 6477 snR45 3' 28.342935 70.349553 49.346244 1.693254102 0.113106 48 7 SH15127 15127 MT tRNA Phe 5' / tRNA 25.251861 94.12857 25.251861 69.876709 47.564285 1.677280973 -0.102811 48 8 SH20636 20636 YHR141C spliced 26.50403 82.466166 54.485098 1.736277736 -0.170719 48 9 SH16273 16273 YDR447C_4_1355542_1354818_INTRON_4_317 intron 49.580291 146.764388 49.580291 98.184097 73.882194 1.868539784 0.218586 48 10 SH7352 7352 snR68 5' - 2 -19 2 26.024717 56.847814 41.4362655 1.617380607 0.162455 48 11 SH19182 19182 YPL079W_16_406631_407534_INTRON_12_432 intron 34.775802 127.616294 34.775802 93.840492 64.308147 1.808265996 0.012567 48 12 SH3167 3167 Ser5 5' flank 28.743455 84.279669 56.511562 1.752137312 -0.039666 48 13 SH6905 6905 snR56 3' 24.94772 70.597773 47.7727465 1.67918021 -0.135999 48 14 SH19004 19004 YOR122C_15_552886_552297_INTRON_14_222 3' exon 27.464742 140.017188 27.464742 113.552446 70.508594 1.848242055 -0.576348 48 15 SH4438 4438 telomerase RNA telomerase 1226 1242 30.058952 113.850596 71.954774 1.857059613 -0.504527 48 16 SH18424 18424 YMR133W_13_536206_537608_INTRON_1243_1358 3' exon 28.433691 107.802392 28.433691 80.368701 54.401196 1.735608448 -0.012509 48 17 SH13672 13672 MT ATP6 ATP6 / 3' 29.116567 110.926163 29.116567 82.809596 55.9630815 1.74790162 0.002252 48 18 SH9467 9467 RUF2 RUF2 176 193 31.987165 99.65141 65.8192875 1.818353177 -0.180883 48 19 SH17255 17255 YHR097C_8_298611_297387_INTRON_126_249 3' exon 32.351925 123.751499 32.351925 92.399574 62.3757495 1.795015777 -0.017763 48 20 SH12978 12978 MT COX1 COX1ai2 27.776628 102.789948 27.776628 76.01332 51.894974 1.715125299 -0.000776 48 21 SH20076 20076 YCR031C spliced 34.787046 98.790478 66.788762 1.824703393 -0.091543 48 22 SH7412 7412 snR69 5' 29.718112 68.116357 48.9172345 1.689461897 0.235303 48 23 SH14284 14284 MT VAR1 includes 5’ processing site VAR1 27.013915 92.050982 27.013915 66.037067 46.525491 1.667690965 0.081321 48 24 SH20423 20423 YGL031C spliced 36.107166 100.445655 68.2764105 1.834270681 -0.094386 48 25 SH15378 15378 YBL027W_2_168385_169338_INTRON_3_386 intron 29.139778 96.98502 29.139778 68.845242 48.99251 1.69012969 0.187243 48 26 SH9036 9036 snR17a / U3a U3a 466 480 74.936235 126.359424 100.6478295 2.002804414 0.12757 48 27 SH12300 12300 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.077688 115.635528 31.077688 85.55784 58.317764 1.765800864 0.053407 48 28 SH20722 20722 YJL136C spliced 31.186609 72.72867 51.9576395 1.715649412 0.261626 48 29 SH20649 20649 YIL004C spliced 27.148248 79.38074 53.264494 1.726437806 -0.087291 48 30 SH12985 12985 MT COX1 COX1ai2 27.549688 108.037103 27.549688 81.487415 54.5185515 1.736544309 -0.085858 48 31 SH11905 11905 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6411 6428 36.990427 76.328206 56.6593165 1.753271331 0.463105 48 32 SH11101 11101 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2391 2404 134.728309 184.278587 159.503448 2.202770076 0.127114 48 33 SH8609 8609 snR19 / U1 RNA U1 541 557 31.289961 85.995044 58.6425025 1.768212495 0.054633 48 34 SH11230 11230 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3036 3061 26.455673 79.539493 52.997583 1.724256064 -0.137982 48 35 SH8389 8389 snoRNA cluster 5 snR190 30.973033 99.836898 30.973033 69.863865 50.418449 1.702589482 0.288914 48 36 SH5753 5753 snR35 5' 26.69001 75.430708 51.060359 1.708083864 -0.069533 48 37 SH4228 4228 telomerase RNA telomerase 176 193 26.946333 71.724045 49.335189 1.693156796 -0.002774 48 38 SH20233 20233 YDR139C spliced 26.813015 95.657275 61.235145 1.787000751 -0.316757 48 39 SH2619 2619 Pro3 tRNA-intron 46 63 40.195181 101.265631 70.730406 1.849606151 -0.02291 48 40 SH18821 18821 YNL302C_14_62942_61957_INTRON_21_571 intron 144.33278 328.785197 144.33278 185.452417 164.8925985 2.217201162 0.198421 48 41 SH12370 12370 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.091278 129.638316 37.091278 93.547038 65.319158 1.815040578 0.074023 48 42 SH3558 3558 Tyr2 tRNA 61 73 37.201924 91.023385 64.1126545 1.806943759 0.132103 48 43 SH10640 10640 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 86 99 108.74868 152.788116 130.768398 2.116502803 0.195098 48 44 SH12477 12477 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 264.139558 569.431214 264.139558 306.291656 285.215607 2.455173286 0.107189 48 45 SH13775 13775 MT COB intronic 28.982843 115.816738 28.982843 87.833895 58.408369 1.766475079 -0.080611 48 46 SH13654 13654 MT ATP6 ATP6 26.345877 102.725596 26.345877 77.379719 51.862798 1.714855943 -0.119004 48 47 SH11100 11100 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2386 2399 519.849759 907.32263 713.5861945 2.853446439 -0.771661 48 48 SH8036 8036 snoRNA cluster 2 snR55/intergenic 30.696541 121.699169 30.696541 92.002628 61.3495845 1.787811626 -0.075457 48 49 SH3497 3497 Tyr1 tRNA-exon/intron 26 42 28.517486 76.892115 52.7048005 1.721850174 0.037311 48 50 SH10185 10185 RUF6 RUF6 771 787 28.794948 94.338604 61.566776 1.789346412 -0.199837 48 51 SH13721 13721 MT COB 5' 26.049626 90.320168 26.049626 65.270542 45.660084 1.659536706 0.023839 48 52 SH2810 2810 Pro6 3' flank 27.791475 73.546661 50.669068 1.704742916 0.032619 48 53 SH14032 14032 MT COB Cytbi4 27.973519 103.324797 27.973519 76.351278 52.1623985 1.717357553 0.008091 48 54 SH16687 16687 YGL030W_7_439087_439634_INTRON_4_233 intron 27.780621 118.854736 27.780621 92.074115 59.927368 1.777625204 -0.210248 48 55 SH14222 14222 MT ATP9 ATP9 27.265711 119.636556 27.265711 93.370845 60.318278 1.780448935 -0.256923 48 56 SH19702 19702 Negative Control 34.810868 87.529303 61.1700855 1.786539088 0.154808 48 57 SH11600 11600 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4886 4906 340.698078 325.118417 332.9082475 2.522324555 0.332491 48 58 SH12775 12775 MT COX1 COX1ai1 29.104779 111.632466 29.104779 83.527687 56.316233 1.750633597 -0.007155 48 59 SH12208 12208 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7926 7953 20015.7788 14134.77123 17075.27501 4.232367707 -0.336479 48 60 SH9305 9305 RUF1 RUF1 101 118 29.11855 86.291603 57.7050765 1.761214021 -0.046954 48 61 SH7536 7536 snR79 snR79 21 38 26.356054 70.777167 48.5666105 1.686337795 -0.032677 48 62 SH3789 3789 RNaseP 5' flank 28.062716 76.156372 52.109544 1.716917273 0.016648 48 63 SH7384 7384 snR68 3' 27.763896 84.660345 56.2121205 1.749829969 -0.10951 48 64 SH8588 8588 snR19 / U1 RNA U1 436 453 27.682928 71.444474 49.563701 1.695163728 0.05291 48 65 SH5230 5230 snR30 snR30 1 16 38.889662 99.08927 68.989466 1.838782783 -0.005264 48 66 SH5682 5682 snR34 snR34 331 347 25.515992 68.158892 46.837442 1.670593168 -0.058853 48 67 SH3251 3251 Thr1 3' flank 27.529662 75.315952 51.422807 1.71115578 -0.00842 48 68 SH14103 14103 MT COB Cytbi4 25.179893 90.393981 25.179893 66.214088 45.6969905 1.659887599 -0.054219 48 69 SH11432 11432 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4046 4061 42.687159 104.975477 73.831318 1.868240621 -0.045375 48 70 SH2688 2688 Pro4 3' flank 23.259856 69.149785 46.2048205 1.664687287 -0.246561 48 71 SH13543 13543 MT COX1 intronic 29.392636 124.807584 29.392636 96.414948 62.903792 1.798676827 -0.206019 48 72 SH9663 9663 RUF4 RUF4 91 105 43.914608 90.071998 66.993303 1.826031391 0.291516 48 73 SH2710 2710 Pro5 5' flank 37.794042 87.632826 62.713434 1.797360582 0.222685 48 74 SH722 722 Gln3 3' flank 24.591384 74.460068 49.525726 1.694830851 -0.214815 48 75 SH10152 10152 RUF6 RUF6 606 628 26.098249 77.948692 52.0234705 1.716199321 -0.144221 48 76 SH6747 6747 snR50 5' 37.586167 91.933933 64.76005 1.811307175 0.120673 48 77 SH7510 7510 snR71 3' 28.91197 94.702263 61.8071165 1.791038483 -0.20036 48 78 SH14631 14631 MT 21S rRNA Sce1 endonuc 29.516385 117.829669 29.516385 89.313284 59.4148345 1.773894892 -0.082035 48 79 SH18626 18626 YNL096C_14_444312_443395_INTRON_145_489 intron 27.314785 97.933044 27.314785 71.618259 49.466522 1.694311376 0.024796 48 80 SH18072 18072 YLR344W_12_819312_820142_INTRON_20_466 intron 29.009239 106.623862 29.009239 78.614623 53.811931 1.730878577 0.047343 48 81 SH807 807 Glu1 tRNA 51 63 30.104024 83.462563 56.7832935 1.754220579 0.04916 48 82 SH15870 15870 YDL079C_4_314747_312950_INTRON_413_704 intron 24.577187 102.053435 24.577187 78.476248 51.5267175 1.712032477 -0.266337 48 83 SH15423 15423 YBL072C_2_89435_88518_INTRON_1_308 5' exon 27.665055 114.778457 27.665055 88.113402 57.8892285 1.762597762 -0.156255 48 84 SH3176 3176 Ser5 tRNA 1 13 260.703633 387.265806 323.9847195 2.510524528 -0.289817 48 85 SH17434 17434 YIL133C_9_99416_98527_INTRON_32_321 intron 44.304701 142.025733 44.304701 98.721032 71.5128665 1.854384187 0.111099 48 86 SH12118 12118 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7476 7493 28.831989 94.080804 61.4563965 1.788567092 -0.193883 48 87 SH18661 18661 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.234557 125.029421 30.234557 95.794864 63.0147105 1.799441945 -0.158239 48 88 SH2986 2986 Ser1 3' flank 28.673406 92.509693 60.5915495 1.782412059 -0.175213 48 89 SH10232 10232 RUF6 RUF6 1006 1023 28.444407 73.032047 50.738227 1.705335287 0.084044 48 90 SH15160 15160 MT tRNA Val 5' 25.458806 89.128874 25.458806 64.670068 45.064437 1.65383395 -0.009651 48 91 SH10397 10397 RUF8 5' 44.601228 105.361213 74.9812205 1.874952505 -0.015219 48 92 SH16866 16866 YGL187C_7_150529_149708_INTRON_1_342 intron 27.542281 91.294966 27.542281 64.752685 46.147483 1.664148018 0.137471 48 93 SH8685 8685 LSR1 / U2 RNA U2 66 80 28.298632 73.260009 50.7793205 1.705686885 0.071193 48 94 SH3151 3151 Ser4 3' flank 31.136881 114.228521 72.682701 1.861431058 -0.481457 48 95 SH19287 19287 YPL175W_16_218629_220087_INTRON_18_117 5' exon 31.642032 133.966501 31.642032 103.324469 67.4832505 1.829195993 -0.263658 48 96 SH3636 3636 Val2 5' flank 29.711727 96.763672 63.2376995 1.800976063 -0.197152 48 97 SH10272 10272 RUF7 5' 29.775287 92.627773 61.20153 1.786762279 -0.126716 48 98 SH18067 18067 YLR344W_12_819312_820142_INTRON_20_466 intron 27.033956 94.060685 27.033956 68.026729 47.5303425 1.676970944 0.054264 48 99 SH20456 20456 YGL178W spliced 26.229221 68.392243 47.310732 1.674959668 -0.009075 48 100 SH5567 5567 snR33 snR33 121 135 30.062861 76.558719 53.31079 1.726815118 0.141096 48 101 SH5163 5163 snR13 5' 200.896995 361.974795 281.435895 2.449379488 -0.508654 48 102 SH10231 10231 RUF6 RUF6 1001 1020 135.291551 183.70287 159.4972105 2.202753092 0.137386 48 103 SH11364 11364 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3706 3723 204.738069 284.753045 244.745557 2.388714817 -0.092083 48 104 SH3145 3145 Ser4 3' flank 5.04237 12.058601 8.5504855 0.931990775 0.505714 49 2 SH12243 12243 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.13752 101.763405 29.13752 73.625885 51.3817025 1.71080849 0.121298 49 3 SH19248 19248 YPL129W_16_305297_306136_INTRON_10_114 exon/intron 31.405727 105.201401 31.405727 74.795674 53.1007005 1.72510025 0.24676 49 4 SH20542 20542 YGR214W spliced 28.944728 88.667956 58.806342 1.769424165 -0.096993 49 5 SH3585 3585 Val1 5' flank 30.938383 101.227637 66.08301 1.820089816 -0.241246 49 6 SH16346 16346 YDR500C_4_1450856_1450201_INTRON_8_396 intron 30.521773 113.288122 30.521773 83.766349 57.144061 1.756971101 0.061985 49 7 SH20 20 Ala1 5' flank - tRNA10 5' flank 10 65.927069 126.950923 96.438996 1.98425268 -0.013691 49 8 SH3950 3950 RNase MRP RNaseMRP 166 180 27.238102 79.177575 53.2078385 1.725975617 -0.078499 49 9 SH10507 10507 RUF8 RUF8 461 482 27.043128 78.851721 52.9474245 1.72384484 -0.087906 49 10 SH16359 16359 YEL012W_5_131772_132551_INTRON_6_128 5' exon 100.261194 244.99944 100.261194 145.738246 122.99972 2.089904123 0.185406 49 11 SH17630 17630 YJR094W-A_10_608000_608553_INTRON_3_277 intron 29.59242 108.83907 29.59242 80.24665 54.919535 1.739726851 0.064274 49 12 SH14879 14879 MT tRNA Ala 5' / tRNA 27.276536 95.872923 27.276536 69.596387 48.4364615 1.685172408 0.049578 49 13 SH8097 8097 snoRNA cluster 2 3' 29.242178 117.020984 29.242178 88.778806 59.010492 1.770929236 -0.085242 49 14 SH3664 3664 Val2 tRNA 61 73 109.535725 204.449844 156.9927845 2.195879692 -0.295175 49 15 SH18284 18284 YML067C_13_140214_139063_INTRON_32_124 intron 27.427343 88.323943 27.427343 61.8966 44.6619715 1.64993789 0.174106 49 16 SH10879 10879 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1281 1296 644.189228 493.974746 569.081987 2.755174839 0.47336 49 17 SH19510 19510 ACT1 29.163627 64.481013 46.82232 1.670452929 0.251662 49 18 SH18477 18477 YMR143W_13_551927_552902_INTRON_25_568 intron 27.557711 102.037829 27.557711 75.480118 51.5189145 1.711966704 -0.008637 49 19 SH19713 19713 Negative Control 30.23668 74.246644 52.241662 1.718016985 0.182661 49 20 SH3250 3250 Thr1 3' flank 30.261794 96.806317 63.5340555 1.803006578 -0.173282 49 21 SH14678 14678 MT 21S rRNA 21S rRNA4 26.565327 98.535717 26.565327 72.97039 49.7678585 1.696948954 -0.04673 49 22 SH3906 3906 RNase MRP 5' 29.892712 76.090213 52.9914625 1.724205906 0.136547 49 23 SH12108 12108 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7426 7443 116.639139 175.00557 145.8223545 2.163824106 0.043472 49 24 SH17180 17180 YHR021C_8_148660_147862_INTRON_4_553 intron 32.93732 124.446748 32.93732 92.509428 62.723374 1.797429412 -0.004848 49 25 SH8657 8657 LSR1 / U2 RNA 5' 26.948329 75.000158 50.9742435 1.707350789 -0.04549 49 26 SH6119 6119 snR39B 5' 32.490718 98.09647 65.293594 1.814870574 -0.135597 49 27 SH3372 3372 Thr4 5' flank 28.921299 83.706385 56.313842 1.750615158 -0.021211 49 28 SH828 828 Glu2 5' flank 31.624714 75.199959 53.4123365 1.727641576 0.254455 49 29 SH15676 15676 YBR191W_2_606228_607098_INTRON_12_399 intron 29.991442 124.428184 29.991442 95.436742 62.714092 1.797365139 -0.16325 49 30 SH1952 1952 Lys2 5' flank 27.997444 73.642304 50.819874 1.706033584 0.045592 49 31 SH15717 15717 YBR220C_2_663261_662457_INTRON_302_722 3' exon 27.829979 106.22482 27.829979 79.394841 53.61241 1.72926533 -0.040739 49 32 SH2234 2234 Phe1 tRNA-intron/exon 46 62 29.715461 88.727484 59.2214725 1.772479202 -0.062859 49 33 SH19078 19078 YOR293W_15_867094_867848_INTRON_53_489 intron 31.55895 120.757168 31.55895 90.198218 60.878584 1.784464542 -0.007732 49 34 SH14796 14796 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys 28.836957 118.972017 28.836957 91.13506 59.9860085 1.778049965 -0.144441 49 35 SH14027 14027 MT COB Exon4 26.297168 92.818892 26.297168 67.521724 46.909446 1.671260304 0.008199 49 36 SH16082 16082 YDR025W_4_491510_492319_INTRON_46_384 intron 28.499471 125.093864 28.499471 97.594393 63.046932 1.799663958 -0.26613 49 37 SH11556 11556 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4666 4679 5881.734481 3497.893527 4689.814004 3.671155619 0.276847 49 38 SH21358 21358 YPR187W spliced 31.226467 88.150793 59.68863 1.775891611 0.013613 49 39 SH18414 18414 YMR133W_13_536206_537608_INTRON_1243_1358 5' exon 31.027385 122.842951 31.027385 92.815566 61.9214755 1.791841296 -0.074718 49 40 SH6003 6003 snR37 5' 28.460417 77.469496 52.9649565 1.72398862 0.026047 49 41 SH16993 16993 YGR118W_7_726968_727725_INTRON_66_385 intron 30.604638 117.810138 30.604638 88.2055 59.405069 1.773823505 -0.014269 49 42 SH199 199 Arg2 3' flank 28.612962 85.203607 56.9082845 1.755175494 -0.059156 49 43 SH20844 20844 YLR048W spliced 26.661881 88.267282 57.4645815 1.759400248 -0.227595 49 44 SH14845 14845 MT tRNA Asp 3' 26.546866 104.280229 26.546866 78.733363 52.6401145 1.721316825 -0.121299 49 45 SH2464 2464 Phe5 91 + 3' flank 91 25.97591 62.873856 44.424883 1.647626293 0.056559 49 46 SH18154 18154 YLR426W_12_987057_988108_INTRON_81_151 5' exon 29.830337 111.994348 29.830337 83.164011 56.497174 1.752026725 0.04248 49 47 SH16269 16269 YDR447C_4_1355542_1354818_INTRON_4_317 intron 38.842433 138.379891 38.842433 100.537458 69.6899455 1.843170125 -0.036191 49 48 SH121 121 Arg1 5' flank 28.05891 74.430478 51.244694 1.709648904 0.039344 49 49 SH20085 20085 YCR097W spliced 28.176481 69.292341 48.734411 1.687835722 0.116292 49 50 SH12633 12633 MT_15S MT_15S 44.20559 157.180414 44.20559 113.974824 79.090207 1.898122712 -0.181995 49 51 SH9827 9827 RUF5-1 5' 26.832398 73.971524 50.401961 1.702447434 -0.040541 49 52 SH16287 16287 YDR450W_4_1359912_1360787_INTRON_48_482 5' exon 29.945456 112.178661 29.945456 83.233205 56.5893305 1.752734556 0.046348 49 53 SH15638 15638 YBR186W_2_600511_602318_INTRON_1552_1664 intron 27.872125 104.194962 27.872125 77.322837 52.597481 1.720964945 -0.011411 49 54 SH1997 1997 Lys3 5' flank 32.366181 97.656829 65.011505 1.81299022 -0.129758 49 55 SH10073 10073 RUF6 RUF6 211 227 27.125236 66.514476 46.819856 1.670430074 0.082328 49 56 SH3499 3499 Tyr1 tRNA-exon/intron 36 53 31.240372 85.76467 58.502521 1.767174581 0.05666 49 57 SH6406 6406 snR43 3' 28.786563 77.81432 53.3004415 1.726730806 0.043069 49 58 SH20390 20390 YFL039C spliced 28.928124 86.159072 57.543598 1.759997013 -0.053358 49 59 SH9799 9799 RUF4 771-788 + 3' 771 33.737122 99.340389 66.5387555 1.823074674 -0.129009 49 60 SH2391 2391 Phe4 tRNA 6 22 106.243617 173.256052 139.7498345 2.145351302 -0.048672 49 61 SH2611 2611 Pro3 tRNA 6 22 88.966601 152.393882 120.6802415 2.081636171 -0.026666 49 62 SH14650 14650 MT 21S rRNA 21S rRNA4 142.744184 374.528835 142.744184 232.784651 187.7644175 2.273613294 -0.198416 49 63 SH12452 12452 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.310983 116.404777 32.310983 85.093794 58.7023885 1.768655772 0.113908 49 64 SH4726 4726 snR4 snR4 166 184 31.818133 92.943893 62.381013 1.795052423 -0.043911 49 65 SH11856 11856 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6166 6184 25272.3043 13504.63335 19388.46882 4.287543513 0.040011 49 66 SH16633 16633 YFR024C-A_6_203420_201947_INTRON_48_165 5' exon 29.540315 125.11459 29.540315 96.574275 63.057295 1.799735337 -0.201865 49 67 SH18200 18200 YML024W_13_225889_226697_INTRON_4_401 intron 27.354088 97.595638 27.354088 71.24155 49.297819 1.692827706 0.032626 49 68 SH14612 14612 MT 21S rRNA Sce1 endonuc 25.112679 96.714749 25.112679 72.60207 48.8573745 1.688930125 -0.15017 49 69 SH9971 9971 RUF5-1 RUF5-1 661 677 47.343013 96.781975 72.062494 1.857709288 0.208184 49 70 SH1137 1137 His1 5' flank 27.819302 89.718356 58.768829 1.769147037 -0.168291 49 71 SH21911 21911 copy of SH19564 25.775827 66.995336 46.3855815 1.666383005 -0.022417 49 72 SH10162 10162 RUF6 RUF6 656 670 27.684364 88.227469 57.9559165 1.763097778 -0.156236 49 73 SH15780 15780 YDL012C_4_431513_431104_INTRON_46_131 3' exon 29.838952 115.276523 29.838952 86.437571 58.1382615 1.764462041 -0.016859 49 74 SH7290 7290 snR66 5' 25.677974 71.203868 48.440921 1.685212392 -0.08864 49 75 SH11981 11981 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6791 6808 36.899455 85.830303 61.364879 1.787919882 0.244415 49 76 SH14656 14656 MT 21S rRNA 21S rRNA4 32.717586 117.408741 32.717586 85.691155 59.2043705 1.772353768 0.119824 49 77 SH7349 7349 snR68 5' 28.956867 69.895857 49.426362 1.693958646 0.160583 49 78 SH18167 18167 YLR448W_12_1028848_1029762_INTRON_16_399 intron 32.009469 127.856882 32.009469 96.847413 64.428441 1.809077623 -0.122329 49 79 SH14785 14785 MT ORF11; tRNA Leu; tRNA Gln 3' 27.435761 94.757617 27.435761 68.321856 47.8788085 1.680143334 0.078523 49 80 SH2666 2666 Pro4 5' flank - tRNA8 8 66.554502 131.063961 98.8092315 1.994797522 -0.063178 49 81 SH1648 1648 Leu5 106-115 + 3' flank 106 27.888008 76.13294 52.010474 1.716090812 0.005189 49 82 SH21306 21306 YPL218W spliced 39.91001 92.884476 66.397243 1.822150047 0.149424 49 83 SH15017 15017 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " cox2 / ORF1exon1 26.078627 94.425718 26.078627 69.347091 47.712859 1.678635441 -0.033468 49 84 SH5140 5140 snR11 3' 50.954714 101.332174 76.143444 1.881632516 0.179144 49 85 SH19929 19929 YBL018C spliced 26.939968 73.685531 50.3127495 1.701678051 -0.029119 49 86 SH17973 17973 YLR185W_12_522665_523290_INTRON_8_366 3' exon 33.467366 129.358085 33.467366 96.890719 65.1790425 1.814107976 -0.085168 49 87 SH8196 8196 snoRNA cluster 3; intergenic 25.834532 87.532713 25.834532 62.698181 44.2663565 1.646073777 0.049201 49 88 SH8618 8618 snR19 / U1 RNA U1 586 601 33.179908 77.187721 55.1838145 1.741811717 0.300277 49 89 SH3071 3071 Ser3 tRNA 51 65 30.851295 87.303681 59.077488 1.771422021 0.012373 49 90 SH1006 1006 Gly2 tRNA 21 38 29.169766 82.464235 55.8170005 1.746766495 0.009876 49 91 SH319 319 Arg5 5' flank 32.082678 89.364985 60.7238315 1.783359166 0.028654 49 92 SH8009 8009 snoRNA cluster 2 intergenic 26.768365 101.15561 26.768365 75.387245 51.077805 1.708232226 -0.063334 49 93 SH12666 12666 MT_15S MT_15S / 3' 30.367884 162.186759 30.367884 132.818875 81.5933795 1.911654921 -0.813046 49 94 SH14636 14636 MT 21S rRNA Sce1 endonuc 32.838294 173.873561 32.838294 142.035267 87.4367805 1.941694158 -0.883445 49 95 SH5851 5851 snR35 snR35 441 457 96.759585 161.50957 129.1345775 2.111042546 -0.034721 49 96 SH10177 10177 RUF6 RUF6 731 752 29.185446 100.146841 64.6661435 1.810676962 -0.274235 49 97 SH11584 11584 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4806 4819 1816.792094 802.024179 1309.408137 3.117075035 1.063151 49 98 SH6303 6303 snR42 snR42 296 313 28.688452 72.281176 50.484814 1.703160761 0.110448 49 99 SH20046 20046 YBR191W spliced 73.449733 126.777665 100.113699 2.000493508 0.100649 49 100 SH1837 1837 Leu9 5' flank 28.600706 63.654642 46.127674 1.663961556 0.226503 49 101 SH12075 12075 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7261 7281 225.903821 413.079077 319.491449 2.504459239 -0.57568 49 102 SH7540 7540 snR79 snR79 41 57 136.297327 246.986115 191.641721 2.282490062 -0.353665 49 103 SH11218 11218 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2976 2997 35.660727 75.884414 55.7725705 1.746420661 0.423128 49 104 SH6927 6927 snR58 5' - 15 -4 15 2.976433 9.868136 6.4222845 0.80768954 0.121698 50 2 SH19251 19251 YPL129W_16_305297_306136_INTRON_10_114 intron 30.669846 119.002961 30.669846 89.333115 60.0014805 1.778161966 -0.031071 50 3 SH12812 12812 MT COX1 COX1ai1 32.685949 129.173794 32.685949 97.487845 65.086897 1.813493567 -0.117838 50 4 SH4940 4940 snR9 snR9 106 123 28.117962 75.079095 51.5985285 1.712637316 0.034618 50 5 SH6264 6264 snR42 snR42 101 116 37.143563 92.632394 64.8879785 1.812164244 0.095179 50 6 SH18134 18134 YLR406C_12_931752_931062_INTRON_58_406 intron 25.908881 95.012382 25.908881 70.103501 48.006191 1.681297249 -0.056455 50 7 SH16350 16350 YDR500C_4_1450856_1450201_INTRON_8_396 intron 41.411449 134.933173 41.411449 94.521724 67.9665865 1.832295459 0.143768 50 8 SH14780 14780 MT ORF11; tRNA Leu; tRNA Gln tRNA Gln 27.64423 90.659595 27.64423 64.015365 45.8297975 1.661147938 0.155576 50 9 SH4330 4330 telomerase RNA telomerase 686 702 67.977357 119.836218 93.9067875 1.972696984 0.125866 50 10 SH9597 9597 RUF3 RUF3 371 392 25.790075 60.962377 43.376226 1.637251763 0.074513 50 11 SH16293 16293 YDR450W_4_1359912_1360787_INTRON_48_482 intron 25.839605 100.98579 25.839605 76.146185 50.992895 1.707509669 -0.140951 50 12 SH2406 2406 Phe4 81-91 + 3' flank 81 25.38414 75.945995 50.6650675 1.704708626 -0.172673 50 13 SH21717 21717 copy of SH11502 48.98498 75.972403 62.4786915 1.795731925 0.732557 50 14 SH7662 7662 snoRNA cluster1 snR78 28.807113 117.416738 28.807113 89.609625 59.208369 1.772383098 -0.119714 50 15 SH18917 18917 YOL121C_15_92849_92025_INTRON_21_410 5' exon 37.901825 140.770256 37.901825 103.868431 70.885128 1.850555128 -0.123591 50 16 SH10693 10693 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 351 368 34.483486 77.51609 55.999788 1.748186383 0.345287 50 17 SH12422 12422 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.97646 100.504982 28.97646 72.528522 50.752491 1.705457363 0.125889 50 18 SH9248 9248 snR6 / U6 RNA 111-112 + 3' 111 29.94032 65.913224 47.926772 1.680578179 0.281199 50 19 SH19945 19945 YBL040C spliced 27.936081 79.531094 53.7335875 1.730245837 -0.035286 50 20 SH19483 19483 ADH1 30.23571 87.77707 59.00639 1.770899045 -0.022969 50 21 SH1384 1384 Leu1 5' flank - tRNA9 9 32.39428 83.929583 58.1619315 1.764638821 0.138665 50 22 SH12996 12996 MT COX1 COX1ai2 32.287946 116.045773 32.287946 84.757827 58.5228865 1.767325739 0.119073 50 23 SH15145 15145 MT tRNA Thr1 reverse complement tRNA 27.476836 100.959344 27.476836 74.482508 50.979672 1.707397037 -0.001441 50 24 SH9196 9196 snR7 U5 RNA 3' 27.210903 105.190846 66.2008745 1.820863726 -0.444011 50 25 SH8313 8313 snoRNA cluster4 intergenic 29.030742 97.801211 29.030742 69.770469 49.4006055 1.693732272 0.167213 50 26 SH10631 10631 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 41 60 26.257434 79.34571 52.801572 1.722646852 -0.149711 50 27 SH7248 7248 snR65 snR65 16 36 28.497332 86.40016 57.448746 1.759280553 -0.080749 50 28 SH12851 12851 MT COX1 COX1ai1 26.92682 113.589945 26.92682 87.663125 57.2949725 1.758116515 -0.202088 50 29 SH14323 14323 MT VAR1 includes 5’ processing site VAR1 27.757478 99.484976 27.757478 72.727498 50.242488 1.701071137 0.04101 50 30 SH280 280 Arg4 5- flank - tRNA10 5' flank 10 30.562655 85.088392 57.8255235 1.762119573 0.039552 50 31 SH18950 18950 YOL127W_15_80347_81189_INTRON_14_427 intron 30.416482 112.563615 30.416482 83.147133 56.7818075 1.754209213 0.068838 50 32 SH11006 11006 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1916 1932 3213.037097 2197.781547 2705.409322 3.432232982 0.225461 50 33 SH2751 2751 Pro5 3' flank 29.124997 89.630171 59.377584 1.773622523 -0.10538 50 34 SH12459 12459 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 1483.364298 2600.709052 1483.364298 1118.344754 1300.854526 3.114228732 0.275088 50 35 SH20798 20798 YKL157W spliced 32.353726 98.001643 65.1776845 1.814098928 -0.137244 50 36 SH2099 2099 Lys4 3' flank 43.446611 93.79151 68.6190605 1.836444768 0.199237 50 37 SH8052 8052 snoRNA cluster 2 intergenic 28.12017 104.893895 28.12017 77.773725 52.9469475 1.723840927 -0.000539 50 38 SH12166 12166 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7716 7733 144.226319 215.404653 179.815486 2.254827091 -0.05532 50 39 SH12095 12095 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7361 7386 24.373473 72.775408 48.5744405 1.686407807 -0.209997 50 40 SH19110 19110 YOR312C_15_901173_900242_INTRON_2_427 intron 26.536283 99.451045 26.536283 73.914762 50.2255225 1.700924463 -0.061175 50 41 SH7002 7002 snR60 91-104 + 3' 91 33.372296 83.816952 58.594624 1.767857772 0.180552 50 42 SH774 774 Gln4 3' flank 26.830086 69.245458 48.037772 1.681582857 0.022647 50 43 SH11594 11594 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4856 4869 26.909313 83.397773 55.153543 1.741573416 -0.153373 50 44 SH6138 6138 snR39B snR39B 31 47 40.195431 99.915313 70.055372 1.845441444 0.004784 50 45 SH16291 16291 YDR450W_4_1359912_1360787_INTRON_48_482 intron 32.233289 138.085059 32.233289 106.85177 69.5425295 1.842250483 -0.316 50 46 SH7180 7180 snR64 5' 49.82837 94.198888 72.013629 1.857414697 0.306908 50 47 SH1507 1507 Leu3 tRNA 6 18 27218.02558 37183.34949 32200.68753 4.507865145 -1.462218 50 48 SH18698 18698 YNL130C_14_381156_379555_INTRON_30_470 exon/intron 28.123557 107.704463 28.123557 80.580906 54.3522315 1.735217379 -0.035813 50 49 SH1781 1781 Leu8 5' flank 29.055104 98.927521 63.9913125 1.806121018 -0.261275 50 50 SH1815 1815 Leu8 101 + 3' flank 101 27.877373 79.070458 53.4739155 1.728141985 -0.033434 50 51 SH6233 6233 snR42 5' 30.834439 88.957732 59.8960855 1.77739844 -0.017394 50 52 SH19130 19130 YPL075W_16_412249_415357_INTRON_9_759 intron 29.560668 105.058305 29.560668 76.497637 53.0291525 1.724514686 0.110154 50 53 SH15301 15301 YAL001C_1_151163_147591_INTRON_71_160 5'exon 29.924296 121.606866 29.924296 92.68257 61.303433 1.787484796 -0.12095 50 54 SH20914 20914 YLR333C spliced 34.351296 103.841604 69.09645 1.839455735 -0.203984 50 55 SH14517 14517 MT 21S rRNA 21S rRNA3 603.191157 1238.621503 603.191157 636.430346 619.8107515 2.792259105 -0.015731 50 56 SH10883 10883 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1301 1316 31503.26264 13713.89562 22608.57913 4.354273269 0.303515 50 57 SH1145 1145 His1 5' flank 28.651987 74.887149 51.769568 1.714074541 0.07263 50 58 SH117 117 Arg1 5' flank 31.204808 93.730337 62.4675725 1.79565463 -0.082258 50 59 SH21876 21876 copy of SH18251 29.126803 71.949128 50.5379655 1.703617755 0.14367 50 60 SH17079 17079 YGR225W_7_945138_946919_INTRON_1184_1276 3' exon 29.246724 121.777499 29.246724 93.530775 61.3887495 1.788088787 -0.165697 50 61 SH20309 20309 YER007C-A spliced 36.324524 83.420717 59.8726205 1.777228267 0.288817 50 62 SH1174 1174 His1 3' flank 26.681842 74.756285 50.7190635 1.705171226 -0.061504 50 63 SH1509 1509 Leu3 tRNA 16 28 30.700728 88.133718 59.417223 1.77391235 -0.008814 50 64 SH2375 2375 Phe4 5' flank 36.891463 86.563945 61.727704 1.790480123 0.226946 50 65 SH302 302 Arg4 3' flank 29.802775 94.533248 62.1680115 1.793566976 -0.156982 50 66 SH18117 18117 YLR367W_12_855877_857316_INTRON_698_1180 3' exon 31.76006 115.742121 31.76006 84.982061 58.3710605 1.766197584 0.092923 50 67 SH11717 11717 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5471 5484 38.236515 89.899722 64.0681185 1.80664197 0.180773 50 68 SH7135 7135 snR63 snR63 181 198 27.491271 71.782546 49.6369085 1.695804725 0.035001 50 69 SH11602 11602 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4896 4916 60.411254 104.381644 82.396449 1.915908496 0.275222 50 70 SH21156 21156 YNL265C spliced 30.856403 89.442046 60.1492245 1.779230032 -0.02484 50 71 SH17514 17514 YJL136C_10_156971_156248_INTRON_25_484 intron 28.811739 121.191164 28.811739 93.379425 61.095582 1.786009806 -0.183247 50 72 SH9841 9841 RUF5-1 RUF5-1 11 32 26.295685 75.760558 51.0281215 1.707809581 -0.102384 50 73 SH10020 10020 RUF6 5' 119.358983 158.090839 138.724911 2.142154455 0.244678 50 74 SH12139 12139 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7581 7599 27.747864 90.277635 59.0127495 1.77094585 -0.181345 50 75 SH4697 4697 snR4 snR4 21 39 29.888902 78.496091 54.1924965 1.733939158 0.10514 50 76 SH17236 17236 YHR079C-A_8_262554_262193_INTRON_114_199 5' exon 30.440656 128.79521 30.440656 99.354554 64.897605 1.81222867 -0.217182 50 77 SH1222 1222 Ile1 71-74 + 3' flank 71 26.833017 74.987457 50.910237 1.706805119 -0.053586 50 78 SH9998 9998 RUF5-1 3' 29.828191 81.698099 55.763145 1.74634726 0.061278 50 79 SH12014 12014 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6956 6978 27.511391 68.94056 48.2259755 1.683281021 0.075173 50 80 SH5181 5181 snR13 snR13 61 77 31.37784 88.957647 60.1677435 1.779363724 0.00599 50 81 SH15652 15652 YBR189W_2_604466_605466_INTRON_8_420 intron 37.018615 137.275763 37.018615 101.257148 69.1378815 1.839716068 -0.090472 50 82 SH4516 4516 U3b (snR17b) U3b 136 153 27.338371 84.839974 56.0891725 1.748879033 -0.140733 50 83 SH17857 17857 YKR095W-A_11_625432_625839_INTRON_39_113 intron/exon 26.879325 109.094703 26.879325 83.215378 55.0473515 1.740736429 -0.153282 50 84 SH10530 10530 RUF8 RUF8 576 597 26.719071 67.618749 47.16891 1.67365584 0.037473 50 85 SH9057 9057 snR14 / U4 RNA 5' 26.991174 90.014838 58.503006 1.767178182 -0.224095 50 86 SH11231 11231 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3041 3064 59.453076 141.014879 100.2339775 2.001014964 -0.315153 50 87 SH10699 10699 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 381 398 27.950341 93.30502 60.6276805 1.782670953 -0.22264 50 88 SH6006 6006 snR37 5' 28.308445 72.886076 50.5972605 1.704127003 0.076771 50 89 SH12966 12966 MT COX1 COX1ai2 26.201903 94.53723 26.201903 69.335327 47.768615 1.67914265 -0.024224 50 90 SH4574 4574 U3b (snR17b) U3b 426 440 162.508157 168.858384 165.6832705 2.219278659 0.498527 50 91 SH3969 3969 RNase MRP RNaseMRP 261 278 25.85084 68.572141 47.2114905 1.674047712 -0.03958 50 92 SH12877 12877 MT COX1 COX1ai1 28.024733 121.432235 28.024733 94.407502 61.2161175 1.786865782 -0.237254 50 93 SH14561 14561 MT 21S rRNA 21S rRNA3 32.397112 126.363437 32.397112 94.966325 63.6817185 1.804014775 -0.072211 50 94 SH14077 14077 MT COB Cytbi4 27.835463 119.911632 27.835463 93.076169 60.455816 1.781438087 -0.224353 50 95 SH18406 18406 YMR125W_13_517538_520445_INTRON_26_347 intron 27.962167 102.84554 27.962167 75.883373 51.92277 1.715357853 0.01348 50 96 SH16251 16251 YDR397C_4_1266887_1266355_INTRON_38_129 intron 26.122421 98.249876 26.122421 73.127455 49.624938 1.695699977 -0.081171 50 97 SH15082 15082 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.390791 99.72876 28.390791 72.337969 50.36438 1.702123492 0.089608 50 98 SH2501 2501 Pro1 5' flank - tRNA8 8 223.075952 246.42796 234.751956 2.37060922 0.252315 50 99 SH701 701 Gln3 tRNA 36 48 37.27954 82.093735 59.6866375 1.775877113 0.34356 50 100 SH10071 10071 RUF6 RUF6 201 218 26.378651 70.720731 48.549691 1.68618647 -0.030261 50 101 SH6085 6085 snR37 snR37 341 360 134.730151 300.341178 217.5356645 2.337530469 -0.69473 50 102 SH21065 21065 YMR201C spliced 124.839764 303.345325 214.0925445 2.330601544 -0.803954 50 103 SH18128 18128 YLR388W_12_898158_898821_INTRON_1_488 intron/exon 34.335492 121.595699 34.335492 88.260207 61.2978495 1.787445239 0.126169 50 104 SH3913 3913 RNase MRP 5' 2.863482 9.729407 6.2964445 0.79909538 0.092618 51 2 SH1575 1575 Leu4 tRNA-intron 46 62 27.71032 73.818506 50.764413 1.705559369 0.023447 51 3 SH4465 4465 telomerase RNA 3' 30.86314 101.439044 66.151092 1.820537018 -0.247564 51 4 SH1417 1417 Leu1 3' flank 32.001137 86.126469 59.063803 1.771321407 0.08235 51 5 SH3640 3640 Val2 5' flank 25.829829 78.268745 52.049287 1.716414785 -0.168062 51 6 SH10275 10275 RUF7 5' - 2 -14 2 28.259616 77.52925 52.894433 1.723409966 0.011934 51 7 SH3248 3248 Thr1 3' flank 30.224512 90.544748 60.38463 1.78092641 -0.071489 51 8 SH11282 11282 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3296 3313 29.814609 83.617703 56.716156 1.753706788 0.033358 51 9 SH20216 20216 YDR064W spliced 27.461452 83.247558 55.354505 1.743152972 -0.113299 51 10 SH2238 2238 Phe1 tRNA 66 80 32.03641 87.744727 59.8905685 1.777358436 0.055028 51 11 SH1210 1210 Ile1 tRNA 11 25 61.890377 146.170218 104.0302975 2.01715984 -0.340079 51 12 SH8520 8520 snR19 / U1 RNA U1 96 113 27.440116 85.765345 56.6027305 1.752837382 -0.144595 51 13 SH20006 20006 YBR082C spliced 31.353115 108.441427 69.897271 1.84446022 -0.369652 51 14 SH12777 12777 MT COX1 COX1ai1 26.994076 122.187561 26.994076 96.193485 61.5937805 1.789536861 -0.316396 51 15 SH16783 16783 YGL103W_7_310965_311925_INTRON_50_560 intron 31.758909 175.050661 31.758909 144.291752 88.0253305 1.944607664 -0.944061 51 16 SH20240 20240 YDR305C spliced 32.53603 160.034118 96.285074 1.983558969 -1.131934 51 17 SH11982 11982 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6796 6813 56.212673 108.161309 82.186991 1.914803081 0.13799 51 18 SH17346 17346 YIL018W_9_316766_317930_INTRON_5_404 intron 29.89245 103.195285 29.89245 74.302835 52.0976425 1.716818071 0.16033 51 19 SH20900 20900 YLR306W spliced 30.146617 88.892929 59.519773 1.774661266 -0.04646 51 20 SH15245 15245 MT tRNA fMet tRNA 27.614901 100.042682 27.614901 73.427781 50.521341 1.70347487 0.021897 51 21 SH15760 15760 YCR031C_3_178212_177492_INTRON_8_314 intron 29.691793 113.661237 29.691793 84.969444 57.3306185 1.758386627 0.003025 51 22 SH10816 10816 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 966 983 4421.617664 3003.299119 3712.458392 3.569661595 0.146911 51 23 SH8001 8001 snoRNA cluster 2 intergenic 29.634069 112.42882 29.634069 83.794751 56.71441 1.753693418 0.021956 51 24 SH14362 14362 MT ORF9 and ORF10 (hypothetical) ORF9 29.168017 95.897773 29.168017 67.729756 48.4488865 1.6852838 0.204784 51 25 SH13695 13695 MT ORF 5 (hypothetical) 3' 30.538083 109.370265 30.538083 79.832182 55.1851325 1.74182209 0.128727 51 26 SH17559 17559 YJL189W_10_75932_76473_INTRON_7_392 intron 302.241431 648.964043 302.241431 347.722612 324.9820215 2.511859336 0.071875 51 27 SH84 84 Ala2 56-68 56 68 47.837319 99.824107 73.830713 1.868237063 0.154313 51 28 SH13819 13819 MT COB Cytbi2 28.52721 124.520004 28.52721 96.992794 62.760002 1.797682949 -0.255262 51 29 SH13843 13843 MT COB Cytbi2 27.272438 95.088268 27.272438 68.81583 48.044134 1.68164037 0.060111 51 30 SH12784 12784 MT COX1 COX1ai1 27.794968 101.371302 27.794968 74.576334 51.185651 1.709148231 0.01952 51 31 SH9855 9855 RUF5-1 RUF5-1 81 98 27.779641 73.728218 50.7539295 1.705469672 0.029433 51 32 SH4784 4784 snR5 snR5 91 110 29.719825 74.084834 51.9023295 1.71518685 0.152359 51 33 SH533 533 Cys1 5' flank 26.776213 74.561115 50.668664 1.704739453 -0.052196 51 34 SH21078 21078 YMR230W spliced 42.350621 100.855711 71.603166 1.854932225 0.029046 51 35 SH12609 12609 MT_15S MT_15S 25.752439 93.640699 25.752439 68.88826 47.3203495 1.675047944 -0.051338 51 36 SH17846 17846 YKR094C_11_618384_617630_INTRON_9_376 intron 38.76858 130.072803 38.76858 92.304223 65.5364015 1.816482591 0.138476 51 37 SH18421 18421 YMR133W_13_536206_537608_INTRON_1243_1358 intron 27.923134 110.865166 27.923134 83.942032 55.932583 1.747664876 -0.090203 51 38 SH19039 19039 YOR234C_15_779404_778554_INTRON_20_546 intron 30.696179 96.459757 30.696179 66.763578 48.7298785 1.687795329 0.316913 51 39 SH18379 18379 YMR116C_13_500687_499455_INTRON_538_810 intron 28.715304 116.768772 28.715304 89.053468 58.884386 1.770000151 -0.114355 51 40 SH14482 14482 MT 21S rRNA 21S rRNA3 33.340708 114.489173 33.340708 82.148465 57.7445865 1.761511276 0.21039 51 41 SH4690 4690 snR4 5' - 3 3 33.574234 88.049958 60.812096 1.783989972 0.111849 51 42 SH7073 7073 snR62 3' 29.336204 78.473289 53.9047465 1.731627008 0.070263 51 43 SH20807 20807 YKL180W spliced 29.392958 80.360776 54.876867 1.739389309 0.050108 51 44 SH14324 14324 MT VAR1 includes 5’ processing site VAR1 26.672674 94.391521 26.672674 68.718847 47.6957605 1.678479778 0.01864 51 45 SH11098 11098 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2376 2391 142.637439 150.442477 146.539958 2.165956063 0.539205 51 46 SH4449 4449 telomerase RNA telomerase 1281 1298 28.264308 82.847851 55.5560795 1.744731591 -0.054184 51 47 SH16878 16878 YGL187C_7_150529_149708_INTRON_1_342 3' exon 26.349398 100.246981 26.349398 74.897583 50.6234905 1.704352087 -0.087461 51 48 SH8730 8730 LSR1 / U2 RNA U2 291 308 28.551466 68.775627 48.6635465 1.687203756 0.148935 51 49 SH8003 8003 snoRNA cluster 2 intergenic 25.760526 102.273697 25.760526 77.513171 51.6368485 1.712959729 -0.163928 51 50 SH619 619 Gln1 3' flank 47.766047 121.628116 84.6970815 1.927868446 -0.242288 51 51 SH5318 5318 snR30 snR30 441 455 30.748894 81.663921 56.2064075 1.749785828 0.11123 51 52 SH17880 17880 YLR048W_12_242233_243350_INTRON_91_449 intron 29.545939 101.240356 29.545939 72.694417 51.120178 1.708592357 0.160272 51 53 SH18590 18590 YNL050C_14_534978_534075_INTRON_18_108 3' exon 29.862337 122.596426 29.862337 93.734089 61.798213 1.790975917 -0.141176 51 54 SH13362 13362 MT COX1 intronic 27.097858 102.985771 27.097858 76.887913 51.9928855 1.715943921 -0.058845 51 55 SH8404 8404 snoRNA cluster 5 snR190 28.738696 100.637248 28.738696 72.898552 50.818624 1.706022902 0.10527 51 56 SH10613 10613 RUF8 3' 32.992698 87.488854 60.240776 1.779890558 0.098913 51 57 SH1887 1887 Leu9 3' flank 33.234171 85.327994 59.2810825 1.772916125 0.147361 51 58 SH14165 14165 MT COB intronic 31.382507 116.556254 31.382507 86.173747 58.778127 1.769215743 0.055374 51 59 SH13246 13246 MT COX1 COX1-ai4 29.411832 103.597633 29.411832 75.185801 52.2988165 1.718491861 0.117962 51 60 SH1622 1622 Leu5 5' flank 27.309263 80.789986 54.0496245 1.732792681 -0.093767 51 61 SH7944 7944 snoRNA cluster1 3' 29.788344 114.474319 29.788344 85.685975 57.7371595 1.761455414 -0.005621 51 62 SH16497 16497 YER117W_5_396765_397649_INTRON_43_513 intron 29.737739 116.552248 29.737739 87.814509 58.776124 1.769200943 -0.045855 51 63 SH21783 21783 copy of SH14233 27.073297 75.829686 51.4514915 1.711397969 -0.047136 51 64 SH11440 11440 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4086 4101 8891.200574 5785.868682 7338.534628 3.865609348 0.017978 51 65 SH13610 13610 MT ATP8/AAP1 3' 28.730637 97.458934 28.730637 69.728297 49.229467 1.692225134 0.147782 51 66 SH19169 19169 YPL079W_16_406631_407534_INTRON_12_432 intron 28.266749 122.995399 28.266749 95.72865 61.9976995 1.792375575 -0.247244 51 67 SH19937 19937 YBL027W spliced 46.14712 103.29911 74.723115 1.873454968 0.054076 51 68 SH5296 5296 snR30 snR30 331 343 28.251497 80.354612 54.3030545 1.734824259 -0.024445 51 69 SH17379 17379 YIL052C_9_257061_256224_INTRON_38_509 intron 26.622524 99.860045 26.622524 74.237521 50.4300225 1.702689162 -0.059108 51 70 SH6095 6095 snR37 3' 26.879322 63.82092 45.350121 1.65657845 0.105268 51 71 SH10385 10385 RUF7 3' 97.712166 145.319955 121.5160605 2.084633681 0.161475 51 72 SH10994 10994 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1856 1875 4947.222964 3839.96143 4393.592197 3.642819744 -0.096128 51 73 SH17424 17424 YIL111W_9_155219_155762_INTRON_2_89 3' exon 25.855926 96.836818 25.855926 71.980892 48.918409 1.689472324 -0.085754 51 74 SH19180 19180 YPL079W_16_406631_407534_INTRON_12_432 intron 45.725697 154.629871 45.725697 109.904174 77.8149355 1.891062962 -0.079343 51 75 SH12403 12403 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.099924 117.7858 32.099924 86.685876 59.3929 1.773734531 0.07646 51 76 SH7742 7742 snoRNA cluster1 intergenic 28.368254 100.297963 28.368254 72.929709 50.6489815 1.704570717 0.080261 51 77 SH20522 20522 YGR034W spliced 31.640506 83.154773 57.3976395 1.758894032 0.121501 51 78 SH6361 6361 snR43 snR43 46 63 30.008596 77.531531 53.7700635 1.730540549 0.125049 51 79 SH7495 7495 snR71 3' 30.036664 88.787809 59.4122365 1.773875901 -0.04952 51 80 SH2713 2713 Pro5 5' flank 29.414193 81.17501 55.2946015 1.742682733 0.041375 51 81 SH1632 1632 Leu5 tRNA-exon/intron 26 42 30.806219 98.656249 64.731234 1.811113886 -0.192656 51 82 SH822 822 Glu1 3' flank 28.94622 72.222194 50.584207 1.704014946 0.128159 51 83 SH412 412 Asn1 3' flank 29.666839 92.564695 61.115767 1.786153267 -0.130546 51 84 SH1401 1401 Leu1 tRNA 76 92 479.429385 620.620596 550.0249905 2.740382422 -0.271454 51 85 SH20899 20899 YLR306W spliced 25.551575 75.732809 50.642192 1.704512495 -0.157315 51 86 SH3884 3884 RNaseP 3' 27.699976 69.820289 48.7601325 1.688064877 0.076162 51 87 SH15470 15470 YBL087C_2_60732_59815_INTRON_43_546 3' exon 35.353048 126.72295 35.353048 92.369902 63.861475 1.805238945 0.058713 51 88 SH11471 11471 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4241 4256 19186.67631 11214.90102 15200.78867 4.181866121 -0.026044 51 89 SH4504 4504 U3b (snR17b) U3b 76 92 27.895712 76.600129 52.2479205 1.71806901 -0.000415 51 90 SH2638 2638 Pro3 3' flank 30.278407 82.87236 56.5753835 1.752627507 0.067869 51 91 SH4125 4125 SRP RNA SRP RNA 516 530 34.776381 117.618064 76.1972225 1.881939141 -0.450819 51 92 SH19225 19225 YPL090C_16_378390_377286_INTRON_7_400 intron 35.945136 228.520172 35.945136 193.575036 114.760086 2.059790865 -1.413429 51 93 SH16527 16527 YER131W_5_423587_424307_INTRON_1_361 intron 28.050629 119.231256 28.050629 92.180627 60.115628 1.778987388 -0.199091 51 94 SH1746 1746 Leu7 tRNA 26 41 32.1448 102.477455 67.3111275 1.828086865 -0.233468 51 95 SH20915 20915 YLR344W spliced 47.877216 105.67852 76.777868 1.885236048 0.039834 51 96 SH15634 15634 YBR186W_2_600511_602318_INTRON_1552_1664 5' exon 27.884142 104.663476 27.884142 77.779334 52.831738 1.722894898 -0.016493 51 97 SH21758 21758 copy of SH13183 34.648074 77.614394 56.131234 1.74920459 0.349699 51 98 SH13006 13006 MT COX1 COX1ai2 27.293327 96.802798 27.293327 70.509471 48.901399 1.689321284 0.038255 51 99 SH465 465 Asp1 3' flank 39.295765 76.976792 58.1362785 1.764447228 0.519269 51 100 SH10963 10963 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1701 1718 123.014365 138.742038 130.8782015 2.116867318 0.503831 51 101 SH1114 1114 Gly4 tRNA 46 60 168.454745 389.321181 278.887963 2.44542977 -0.848041 51 102 SH20674 20674 YIL106W spliced 101.935796 299.026748 200.481272 2.302073809 -1.024623 51 103 SH3994 3994 RNase MRP 3' 35.524277 99.983043 67.75366 1.83093276 -0.098255 51 104 SH6280 6280 snR42 snR42 181 197 61.531004 105.237856 83.38443 1.921084964 0.276829 52 2 SH4044 4044 SRP RNA SRP RNA 111 128 29.418862 87.247534 58.333198 1.765915786 -0.050264 52 3 SH13431 13431 MT COX1 intronic 25.012397 98.2318 25.012397 74.219403 49.6159 1.695620874 -0.179017 52 4 SH5830 5830 snR35 snR35 336 353 49.926556 77.412069 63.6693125 1.80393016 0.709501 52 5 SH21153 21153 YNL265C spliced 28.079891 78.297644 53.1887675 1.725819927 -0.009962 52 6 SH18347 18347 YML124C_13_23684_22049_INTRON_26_323 intron 26.219075 101.867705 26.219075 76.64863 51.4338525 1.711249055 -0.119186 52 7 SH19459 19459 CYC1 60.784199 108.908357 84.846278 1.928632796 0.198852 52 8 SH12262 12262 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 130.894386 278.765846 130.894386 148.87146 139.882923 2.145764699 0.455728 52 9 SH12538 12538 MT_ORF6 + ORF7 (hypothetical) ORF6/7 35.758241 119.706176 35.758241 84.947935 60.353088 1.780699496 0.238547 52 10 SH16449 16449 YER074W_5_306319_307192_INTRON_4_469 3' exon 31.184975 127.939763 31.184975 97.754788 64.4698815 1.809356872 -0.163571 52 11 SH21883 21883 copy of SH18403 31.34414 99.29784 65.32099 1.815052758 -0.191023 52 12 SH13199 13199 MT COX1 Exon4 27.078673 113.258598 27.078673 87.179925 57.129299 1.756858895 -0.185958 52 13 SH11539 11539 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4581 4594 20806.51688 10749.07544 15777.79616 4.198046341 0.146769 52 14 SH10392 10392 RUF7 3' 53.676111 128.979986 91.3280485 1.960604178 -0.246714 52 15 SH21274 21274 YPL090C spliced 26.990395 75.555326 51.2728605 1.709887547 -0.049563 52 16 SH14298 14298 MT VAR1 includes 5’ processing site VAR1 28.597084 103.558119 28.597084 75.961035 52.2790595 1.718327766 0.05476 52 17 SH18447 18447 YMR142C_13_551206_550205_INTRON_5_406 intron/exon 29.230478 99.064625 29.230478 70.834147 50.0323125 1.699250576 0.165899 52 18 SH6554 6554 snR46 3' 27.417494 78.081284 52.749389 1.722217434 -0.052171 52 19 SH20536 20536 YGR183C spliced 30.958684 94.423602 62.691143 1.797206188 -0.104257 52 20 SH31 31 Ala1 tRNA 51 63 29.426149 81.439555 55.432852 1.743767223 0.038883 52 21 SH944 944 Gly1 5' flank 31.388411 89.441114 60.4147625 1.781143073 -0.001944 52 22 SH1738 1738 Leu7 5' flank - tRNA3 3 29.11509 82.475722 55.795406 1.746598442 0.006202 52 23 SH1928 1928 Lys1 3' flank 26.88608 71.20434 49.04521 1.690596598 -0.000107 52 24 SH10336 10336 RUF7 RUF7 291 310 28.68776 100.37878 64.53327 1.809783672 -0.300834 52 25 SH1168 1168 His1 61-72 + 3' flank 61 41.189075 89.479916 65.3344955 1.815142542 0.252402 52 26 SH11960 11960 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6686 6699 241.24043 218.939654 230.090042 2.361897823 0.544252 52 27 SH19035 19035 YOR234C_15_779404_778554_INTRON_20_546 intron 32.425408 127.015443 32.425408 95.590035 64.0077215 1.806232368 -0.084757 52 28 SH16114 16114 YDR064W_4_579453_580447_INTRON_22_560 intron 25.666518 91.570309 25.666518 66.903791 46.2851545 1.665441718 -0.028971 52 29 SH10658 10658 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 176 191 36.799555 85.691796 61.2456755 1.787075429 0.245377 52 30 SH14504 14504 MT 21S rRNA 21S rRNA3 27.052926 97.808337 27.052926 71.755411 49.4041685 1.693763594 0.004409 52 31 SH18540 18540 YMR230W_13_732413_733140_INTRON_53_462 intron 29.598667 125.217744 29.598667 96.619077 63.108872 1.800090418 -0.199942 52 32 SH10137 10137 RUF6 RUF6 531 545 34.240575 91.859126 63.0498505 1.799684061 0.042644 52 33 SH10862 10862 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1196 1213 315.670861 343.590458 329.6306595 2.518027599 0.146355 52 34 SH4762 4762 snR5 5' 26.706831 89.131685 57.919258 1.76282299 -0.234178 52 35 SH5646 5646 snR34 snR34 151 170 26.282634 79.55316 52.917897 1.723602577 -0.150518 52 36 SH14782 14782 MT ORF11; tRNA Leu; tRNA Gln tRNA / 3' 25.805949 96.106988 25.805949 71.301039 48.553494 1.686220488 -0.080374 52 37 SH15626 15626 YBR181C_2_592732_591670_INTRON_7_358 intron 27.872537 115.265209 27.872537 88.392672 58.1326045 1.764419781 -0.145345 52 38 SH1712 1712 Leu6 3' flank 27.082129 79.559685 53.320907 1.726897528 -0.09414 52 39 SH15896 15896 YDL083C_4_307788_306925_INTRON_25_456 5' exon 37.645364 142.0175 37.645364 105.372136 71.50875 1.854359186 -0.158823 52 40 SH20406 20406 YFR031C-A spliced 31.0697 79.266791 55.1682455 1.741689172 0.168362 52 41 SH14051 14051 MT COB Cytbi4 26.859184 107.856577 26.859184 81.997393 54.4282885 1.735824678 -0.139931 52 42 SH2817 2817 Pro6 3' flank 29.481875 87.968391 58.725133 1.768824009 -0.060129 52 43 SH21656 21656 copy of SH8991 31.94095 79.908147 55.9245485 1.747602487 0.195759 52 44 SH3134 3134 Ser4 tRNA 76 90 31.788972 88.99532 60.392146 1.780980462 0.022758 52 45 SH13877 13877 MT COB intronic 29.261433 113.45423 29.261433 85.192797 57.227115 1.757601852 -0.020578 52 46 SH10220 10220 RUF6 RUF6 946 962 29.326277 75.429287 52.377782 1.719147104 0.109236 52 47 SH12122 12122 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7496 7516 27.073305 88.414873 57.744089 1.761507534 -0.200415 52 48 SH13135 13135 MT COX1 COX1ai3 28.854331 123.103628 28.854331 95.249297 62.051814 1.792754482 -0.211941 52 49 SH20313 20313 YER007C-A spliced 32.494066 85.278262 58.886164 1.770013264 0.11812 52 50 SH3937 3937 RNase MRP RNaseMRP 101 115 32.41128 100.132385 66.2718325 1.82132898 -0.179403 52 51 SH4235 4235 telomerase RNA telomerase 211 230 26.637955 72.888257 49.763106 1.696907479 -0.040391 52 52 SH7482 7482 snR71 snR71 26 43 27.51637 73.663432 50.589901 1.70406383 0.011938 52 53 SH10425 10425 RUF8 RUF8 51 71 27.651603 73.756932 50.7042675 1.705044513 0.020163 52 54 SH3034 3034 Ser2 3' flank 31.736109 89.110813 60.423461 1.781205598 0.018524 52 55 SH17368 17368 YIL052C_9_257061_256224_INTRON_38_509 intron 35.673561 140.06725 35.673561 105.393689 70.533625 1.848396205 -0.20351 52 56 SH2446 2446 Phe5 tRNA 1 13 30.898809 76.44917 53.6739895 1.729763877 0.194207 52 57 SH8858 8858 LSR1 / U2 RNA U2 931 946 365.366982 491.777538 428.57226 2.632024057 -0.245339 52 58 SH1516 1516 Leu3 tRNA-intron 51 65 27.106109 92.031813 59.568961 1.775020025 -0.242435 52 59 SH8077 8077 snoRNA cluster 2 snR61/3' 29.791454 114.459398 29.791454 85.667944 57.729699 1.761399293 -0.005155 52 60 SH5600 5600 snR34 5' 34.86818 89.488328 62.178254 1.793638523 0.111267 52 61 SH6108 6108 snR37 3' 30.349505 83.674274 57.0118895 1.755965435 0.056111 52 62 SH6008 6008 snR37 5' 27.956063 71.05268 49.5043715 1.694643551 0.077095 52 63 SH17673 17673 YKL006C-A_11_430270_429836_INTRON_37_177 3' exon 32.50875 118.126121 32.50875 86.617371 59.5630605 1.774977005 0.094622 52 64 SH2321 2321 Phe3 5' flank 30.070531 84.697834 57.3841825 1.758792199 0.024942 52 65 SH5792 5792 snR35 snR35 146 163 27.700494 70.055957 48.8782255 1.689115431 0.072965 52 66 SH1956 1956 Lys2 5' flank - tRNA2 2 25.005576 73.938813 49.4721945 1.694361175 -0.175908 52 67 SH7491 7491 snR71 snR71 71 90 26.860404 76.834996 51.8477 1.714729496 -0.074977 52 68 SH10301 10301 RUF7 RUF7 116 132 29.203123 70.03834 49.6207315 1.695663162 0.174938 52 69 SH8810 8810 LSR1 / U2 RNA U2 691 703 62.178284 110.936682 86.557483 1.937304619 0.184635 52 70 SH13661 13661 MT ATP6 ATP6 26.835702 90.496643 26.835702 64.660941 45.7483215 1.660375164 0.088944 52 71 SH7767 7767 snoRNA cluster1 snR76 37.78966 130.040483 37.78966 93.250823 65.5202415 1.81637549 0.096389 52 72 SH7711 7711 snoRNA cluster1 snR77 32.529691 129.742826 32.529691 98.213135 65.371413 1.815387872 -0.136986 52 73 SH9048 9048 snR17a / U3a 3' 25.604799 64.96595 45.2853745 1.655957964 -0.003602 52 74 SH7957 7957 snoRNA cluster 2 5' 25.563454 99.356367 25.563454 74.792913 50.1781835 1.700514935 -0.144436 52 75 SH81 81 Ala2 41-56 41 56 407.126726 537.301599 472.2141625 2.674139008 -0.249512 52 76 SH9024 9024 snR17a / U3a U3a 406 420 35.604742 95.691132 65.647937 1.817221083 -0.006956 52 77 SH9727 9727 RUF4 RUF4 411 427 27.240678 70.85795 49.049314 1.690632938 0.029806 52 78 SH10976 10976 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1766 1781 1817.776032 1252.068172 1534.922102 3.18608634 0.366538 52 79 SH21674 21674 copy of SH9837 27.868712 74.442941 51.1558265 1.708895106 0.026341 52 80 SH14168 14168 MT COB intronic 27.511378 101.189146 27.511378 74.677768 51.094573 1.708374774 -0.001534 52 81 SH10539 10539 RUF8 RUF8 621 637 29.162562 92.45936 60.810961 1.783981867 -0.151731 52 82 SH7812 7812 snoRNA cluster1 intergenic 28.411977 118.263311 28.411977 90.851334 59.6316555 1.775476866 -0.159489 52 83 SH4802 4802 snR5 snR5 181 197 48.352291 97.203552 72.7779215 1.861999648 0.217448 52 84 SH10776 10776 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 766 783 25.865745 74.889471 50.377608 1.702237543 -0.123035 52 85 SH9997 9997 RUF5-1 3' 37.221188 97.882877 67.5520325 1.829638421 -0.016076 52 86 SH8753 8753 LSR1 / U2 RNA U2 406 418 32.33626 82.690854 57.513557 1.759770228 0.159268 52 87 SH11627 11627 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5021 5038 3517.528079 2372.691548 2945.109814 3.469101493 0.222258 52 88 SH3934 3934 RNase MRP RNaseMRP 86 101 38.435617 110.271724 74.3536705 1.871302413 -0.235129 52 89 SH70 70 Ala2 5' flank - tRNA3 5' flank 3 36.470178 77.839502 57.15484 1.757053013 0.413817 52 90 SH8535 8535 snR19 / U1 RNA U1 171 188 27.880212 68.600401 48.2403065 1.683410058 0.105566 52 91 SH16310 16310 YDR450W_4_1359912_1360787_INTRON_48_482 intron/exon 30.290452 107.322139 30.290452 78.031687 54.1610695 1.733687232 0.136226 52 92 SH13369 13369 MT COX1 intronic 26.107646 90.349134 26.107646 65.241488 45.674567 1.659674439 0.028449 52 93 SH9291 9291 RUF1 RUF1 31 47 28.394327 67.612806 48.0035665 1.681273505 0.15467 52 94 SH12829 12829 MT COX1 COX1ai1 28.162112 125.348174 28.162112 98.186062 63.174087 1.800538974 -0.291418 52 95 SH2782 2782 Pro6 tRNA 1 13 220.133745 291.919736 256.0267405 2.408285327 -0.042605 52 96 SH13257 13257 MT COX1 COX1-ai4 27.985484 123.424159 27.985484 96.438675 62.2120795 1.793874718 -0.27206 52 97 SH382 382 Asn1 5' flank - tRNA9 5' flank 9 30.173558 96.130705 63.1521315 1.800388013 -0.166356 52 98 SH3084 3084 Ser3 3' flank 27.617043 78.620457 53.11875 1.725247847 -0.045397 52 99 SH314 314 Arg5 5' flank 26.637275 76.61478 51.6260275 1.712868708 -0.088287 52 100 SH14763 14763 MT ORF11; tRNA Leu; tRNA Gln ORF11 23.435464 80.332502 23.435464 57.897038 40.666251 1.609234137 -0.046753 52 101 SH13637 13637 MT ATP6 ATP6 108.120388 371.104236 108.120388 263.983848 186.052118 2.269634618 -0.743859 52 102 SH7370 7370 snR68 snR68 71 95 87.620747 272.739441 180.180094 2.255706809 -1.049588 52 103 SH19877 19877 Negative Control 40.603372 109.840223 75.2217975 1.876343707 -0.180151 52 104 SH17470 17470 YIL148W_9_68708_69528_INTRON_9_442 3' exon 3.5037 15.017468 3.5037 12.513768 8.008734 0.903563869 -0.033742 53 2 SH12439 12439 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.052201 122.732904 33.052201 90.680703 61.866452 1.79145521 0.038672 53 3 SH11467 11467 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4221 4238 294.620791 246.561812 270.5913015 2.432313832 0.597889 53 4 SH14696 14696 MT tRNA thr2 5' 25.096016 95.868811 25.096016 71.772795 48.4344055 1.685153973 -0.140425 53 5 SH6887 6887 snR56 snR56 66 85 25.652529 66.776827 46.214678 1.664779931 -0.02806 53 6 SH18033 18033 YLR316C_12_766358_765266_INTRON_230_285 intron/exon 30.549965 121.150646 30.549965 91.600681 61.075323 1.785865772 -0.07509 53 7 SH20973 20973 YML034W spliced 30.49695 94.957935 62.7274425 1.797457581 -0.133099 53 8 SH1478 1478 Leu2 3' flank 32.274071 95.98907 64.1315705 1.807071875 -0.097215 53 9 SH19356 19356 YPL249C-A_16_76239_75699_INTRON_17_254 intron 27.30599 96.517043 27.30599 70.211053 48.7585215 1.688050528 0.043218 53 10 SH12219 12219 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 42.30049 155.370443 42.30049 114.069953 78.1852215 1.893124671 -0.221695 53 11 SH12195 12195 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7861 7879 26.828587 73.563119 50.195853 1.700667839 -0.035502 53 12 SH17866 17866 YLL050C_12_40413_39803_INTRON_15_193 intron 35.305071 114.186332 35.305071 79.881261 57.593166 1.760370953 0.330306 53 13 SH3542 3542 Tyr2 5' flank 33.240763 93.785531 63.513147 1.802863632 -0.02483 53 14 SH12507 12507 MT_ORF6 + ORF7 (hypothetical) 5' 25.17472 87.93215 25.17472 63.75743 44.466075 1.648028796 -0.016182 53 15 SH17509 17509 YJL136C_10_156971_156248_INTRON_25_484 intron 25.775291 117.215916 25.775291 92.440625 59.107958 1.771645956 -0.337568 53 16 SH20298 20298 YEL012W spliced 28.471553 89.495403 58.983478 1.770730377 -0.133423 53 17 SH9372 9372 RUF1 RUF1 436 452 31.281233 86.561343 58.921288 1.770272232 0.044106 53 18 SH7460 7460 snR71 5' 29.397452 85.710954 57.554203 1.760077044 -0.023751 53 19 SH64 64 Ala2 5' flank 29.341199 77.961215 53.651207 1.729579497 0.077138 53 20 SH19548 19548 CBP1 2.2 33.424907 94.313579 63.869243 1.805291769 -0.03151 53 21 SH783 783 Glu1 5' flank 28.472934 87.452103 57.9625185 1.763147248 -0.097629 53 22 SH19961 19961 YBL059W spliced 35.342588 103.792995 69.5677915 1.842408216 -0.179612 53 23 SH8239 8239 snoRNA cluster 3; 3' 28.722676 96.883936 28.722676 69.16126 48.941968 1.689681429 0.155083 53 24 SH7092 7092 snR63 5' 28.437696 76.841536 52.639616 1.721312712 0.032691 53 25 SH15906 15906 YDL083C_4_307788_306925_INTRON_25_456 intron 29.959739 116.436489 29.959739 87.47675 58.7182445 1.768773063 -0.029939 53 26 SH6926 6926 snR58 5' - 1 -9 10 27.191313 74.512955 50.852134 1.706309183 -0.02195 53 27 SH16700 16700 YGL031C_7_438393_437938_INTRON_1_456 intron 38.084197 134.388609 38.084197 97.304412 67.6943045 1.830552131 0.015009 53 28 SH20895 20895 YLR287C-A spliced 27.580722 74.744284 51.162503 1.708951783 0.00246 53 29 SH3659 3659 Val2 tRNA 36 50 57.563526 111.837465 84.7004955 1.927885951 0.095799 53 30 SH20145 20145 YDL115C spliced 37.857433 89.606786 63.7321095 1.804358294 0.178884 53 31 SH20072 20072 YCR028C-A spliced 29.265653 90.05134 59.6584965 1.775672304 -0.106184 53 32 SH5449 5449 snR32 5' 29.561964 90.570975 60.0664695 1.778632106 -0.101602 53 33 SH16702 16702 YGL031C_7_438393_437938_INTRON_1_456 intron 33.149845 111.808111 33.149845 79.658266 56.4040555 1.751310331 0.250326 53 34 SH9456 9456 RUF2 RUF2 121 138 27.08882 81.696503 54.3926615 1.73554031 -0.12021 53 35 SH5179 5179 snR13 snR13 51 67 31.093716 72.933564 52.01364 1.716117247 0.253189 53 36 SH9944 9944 RUF5-1 RUF5-1 526 538 30.227705 85.049536 57.6386205 1.760713578 0.025509 53 37 SH20088 20088 YDL012C spliced 41.010432 101.273151 71.1417915 1.852124797 -0.006543 53 38 SH20073 20073 YCR028C-A spliced 28.122105 76.697029 52.409567 1.719410572 0.013549 53 39 SH20500 20500 YGR001C spliced 28.716381 70.14479 49.4305855 1.693995755 0.141111 53 40 SH10996 10996 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1866 1882 38416.11852 16869.7186 27642.91856 4.441583894 0.235656 53 41 SH20629 20629 YHR123W spliced 29.356415 85.424352 57.3903835 1.758839127 -0.020439 53 42 SH9177 9177 snR7 U5 RNA U5 156 172 31.826879 83.123679 57.475279 1.759481088 0.12994 53 43 SH274 274 Arg4 5' flank 27.268455 71.695902 49.4821785 1.694448812 0.020487 53 44 SH14683 14683 MT 21S rRNA 21S rRNA4 27.244008 99.922252 27.244008 73.678244 50.461126 1.702956937 -0.007411 53 45 SH5785 5785 snR35 snR35 111 131 31.888606 98.330961 65.1097835 1.813646251 -0.156433 53 46 SH21936 21936 copy of SH19619 29.651805 94.036864 61.8443345 1.79129992 -0.155634 53 47 SH18416 18416 YMR133W_13_536206_537608_INTRON_1243_1358 exon/intron 29.567261 116.443572 29.567261 87.876311 58.721786 1.768799256 -0.054638 53 48 SH11811 11811 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5941 5963 27.836531 71.194873 49.515702 1.694742941 0.066924 53 49 SH10371 10371 RUF7 RUF7 466 480 39.537099 105.982919 72.760009 1.861892744 -0.130405 53 50 SH9511 9511 RUF3 5' 28.348254 71.69532 50.021787 1.699159203 0.095284 53 51 SH1362 1362 Ile3 3' flank 26.858644 71.812009 49.3353265 1.693158007 -0.010228 53 52 SH4699 4699 snR4 snR4 31 48 29.888168 82.171607 56.0298875 1.74841975 0.059277 53 53 SH15967 15967 YDL130W_4_229906_230527_INTRON_115_415 intron 27.644461 100.113156 27.644461 73.468695 50.556578 1.70377767 0.023422 53 54 SH17886 17886 YLR048W_12_242233_243350_INTRON_91_449 intron 30.727913 120.558992 30.727913 90.831079 60.779496 1.783757094 -0.054265 53 55 SH19434 19434 YPR132W_16_794960_795762_INTRON_66_430 intron/exon 31.462821 119.389494 31.462821 88.926673 60.194747 1.779558593 0.010148 53 56 SH18702 18702 YNL130C_14_381156_379555_INTRON_30_470 intron 29.083817 99.642887 29.083817 71.55907 50.3214435 1.701753091 0.14633 53 57 SH16383 16383 YER007C-A_5_166884_166236_INTRON_12_114 intron 26.980823 94.76146 26.980823 68.780637 47.88073 1.680160763 0.039899 53 58 SH6832 6832 snR52 snR52 66 83 29.657307 84.244344 56.9508255 1.755500024 0.014727 53 59 SH18494 18494 YMR194W_13_651144_651909_INTRON_17_479 intron 32.500582 119.175882 32.500582 87.6753 60.087941 1.778787323 0.075506 53 60 SH15729 15729 YBR230C_2_680008_679507_INTRON_12_108 exon/intron 30.586914 114.112381 30.586914 84.525467 57.5561905 1.760092041 0.050882 53 61 SH10546 10546 RUF8 RUF8 656 678 25.967362 73.15556 49.561461 1.6951441 -0.093005 53 62 SH2007 2007 Lys3 5' flank 30.482141 95.300507 62.891324 1.798590738 -0.139319 53 63 SH2000 2000 Lys3 5' flank 27.87893 77.020589 52.4497595 1.719743501 -0.00703 53 64 SH21223 21223 YOR182C spliced 32.851457 97.547494 65.1994755 1.814244102 -0.114763 53 65 SH3440 3440 Trp1 tRNA 31 48 28.342014 75.912018 52.127016 1.717062865 0.038526 53 66 SH10269 10269 RUF7 5' 98.250562 151.945978 125.09827 2.097251304 0.089425 53 67 SH700 700 Gln3 tRNA 31 47 162.796316 431.603234 297.199775 2.473048476 -1.05942 53 68 SH11123 11123 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2501 2516 67.423524 113.789702 90.606613 1.957159896 0.215728 53 69 SH14940 14940 MT tRNA Asn 3' 26.719387 108.493333 26.719387 82.773946 54.7466665 1.73835768 -0.159201 53 70 SH21595 21595 copy of SH6471 26.238905 76.929388 51.5841465 1.712516249 -0.121238 53 71 SH10350 10350 RUF7 RUF7 361 382 27.873153 72.988641 50.430897 1.702696693 0.045579 53 72 SH18860 18860 YNR053C_14_723108_721117_INTRON_811_1341 intron 27.43476 112.261803 27.43476 85.827043 56.6309015 1.753053475 -0.145683 53 73 SH8070 8070 snoRNA cluster 2 snR61 40.696507 165.122331 40.696507 125.425824 83.0611655 1.919398021 -0.446598 53 74 SH13232 13232 MT COX1 COX1-ai4 25.474905 106.826757 25.474905 82.351852 53.9133785 1.731696548 -0.243949 53 75 SH13105 13105 MT COX1 COX1ai3 32.686818 124.725893 32.686818 93.039075 62.8629465 1.798394733 -0.022967 53 76 SH15866 15866 YDL079C_4_314747_312950_INTRON_413_704 intron 26.580073 110.491189 26.580073 84.911116 55.7455945 1.746210551 -0.194573 53 77 SH10188 10188 RUF6 RUF6 786 805 29.537283 80.793699 55.165491 1.741667488 0.053958 53 78 SH15754 15754 YCR031C_3_178212_177492_INTRON_8_314 intron 27.727762 113.842237 27.727762 87.114475 57.4211185 1.759071648 -0.140574 53 79 SH15002 15002 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.328704 112.226933 30.328704 82.898229 56.6134665 1.752919748 0.069608 53 80 SH11922 11922 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6496 6511 36.18691 81.156854 58.671882 1.768430019 0.338818 53 81 SH7556 7556 snR79 3' 27.462653 73.249239 50.355946 1.702050759 0.013586 53 82 SH17902 17902 YLR061W_12_263195_263949_INTRON_13_401 intron 29.170347 99.079279 29.170347 70.908932 50.0396395 1.699314172 0.160921 53 83 SH6417 6417 snR45 5' 28.818207 93.900566 61.3593865 1.787881009 -0.191556 53 84 SH7663 7663 snoRNA cluster1 snR78 28.866033 104.366409 28.866033 76.500376 52.6832045 1.721672183 0.065314 53 85 SH18796 18796 YNL301C_14_64561_63569_INTRON_113_544 intron 28.839435 125.055026 28.839435 97.215591 63.027513 1.799530171 -0.244243 53 86 SH14220 14220 MT ATP9 ATP9 28.470488 101.881747 28.470488 74.411259 51.4408735 1.711308335 0.067039 53 87 SH7918 7918 snoRNA cluster1 snR72 30.27615 107.461181 30.27615 78.185031 54.2305905 1.734244333 0.13337 53 88 SH659 659 Gln2 3' flank 27.860701 66.844896 47.3527985 1.67534565 0.129093 53 89 SH5383 5383 snR31 5' 27.876531 91.131379 59.503955 1.774545833 -0.189714 53 90 SH18646 18646 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.895842 113.271084 27.895842 86.375242 57.135542 1.756906352 -0.120655 53 91 SH6858 6858 snR56 5' 30.195123 75.138953 52.667038 1.721538894 0.168108 53 92 SH6092 6092 snR37 376-386 + 3' 376 28.282434 73.880178 51.081306 1.708261992 0.061724 53 93 SH15639 15639 YBR186W_2_600511_602318_INTRON_1552_1664 intron 28.511782 89.957344 28.511782 62.445562 45.478672 1.657807775 0.238908 53 94 SH15660 15660 YBR189W_2_604466_605466_INTRON_8_420 intron 28.479805 94.431914 28.479805 66.952109 47.715957 1.678663639 0.169881 53 95 SH19208 19208 YPL081W_16_404945_406039_INTRON_8_508 intron 28.315695 96.953356 28.315695 69.637661 48.976678 1.689989324 0.121014 53 96 SH5915 5915 snR36 snR36 31 47 28.14639 71.470067 49.8082285 1.697301096 0.084541 53 97 SH15854 15854 YDL079C_4_314747_312950_INTRON_413_704 5' exon 27.978309 93.88268 27.978309 66.904371 47.44134 1.676156947 0.136352 53 98 SH17895 17895 YLR048W_12_242233_243350_INTRON_91_449 3' exon 29.984657 102.237694 29.984657 73.253037 51.618847 1.7128083 0.18038 53 99 SH16523 16523 YER131W_5_423587_424307_INTRON_1_361 intron 78.159439 205.153983 78.159439 127.994544 103.0769915 2.013161734 0.147594 53 100 SH19572 19572 AEP2/ATP13 0.6 23.29788 57.622398 40.460139 1.60702737 -0.052159 53 101 SH3030 3030 Ser2 3' flank 125.322362 306.092575 215.7074685 2.333865182 -0.814333 53 102 SH9712 9712 RUF4 RUF4 336 355 61.289188 176.991547 119.1403675 2.076058935 -0.701135 53 103 SH15023 15023 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 50.417243 179.876623 50.417243 130.45938 90.4383115 1.956352445 -0.328232 53 104 SH11439 11439 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4081 4097 3.992303 14.533197 9.26275 0.966739943 -0.094855 54 2 SH3052 3052 Ser3 5' flank 27.309108 83.959166 55.634137 1.745341356 -0.132302 54 3 SH17990 17990 YLR275W_12_694378_694800_INTRON_6_95 3' exon 30.22536 112.011471 30.22536 82.786111 56.5057355 1.752092532 0.067133 54 4 SH21699 21699 copy of SH10874 1247.881588 874.597391 1061.23949 3.025813402 0.432539 54 5 SH21025 21025 YMR079W spliced 31.152052 99.148762 65.150407 1.813917133 -0.193226 54 6 SH20443 20443 YGL087C spliced 27.372586 70.921383 49.1469845 1.691496876 0.03825 54 7 SH7014 7014 snR60 3' 2162.129767 1580.309906 1871.219837 3.272124813 0.228847 54 8 SH12508 12508 MT_ORF6 + ORF7 (hypothetical) 5' 28.258157 92.698576 28.258157 65.440419 46.849288 1.670702995 0.176749 54 9 SH12485 12485 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 28.160276 91.945254 28.160276 64.784978 46.472627 1.667197223 0.179726 54 10 SH985 985 Gly2 5' flank 27.793552 69.827103 48.8103275 1.688511722 0.082563 54 11 SH11536 11536 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4566 4582 10364.16875 5975.980147 8170.074447 3.912226014 0.166505 54 12 SH13904 13904 MT COB Exon3 26.352642 97.26131 26.352642 71.908668 49.130655 1.691352554 -0.048146 54 13 SH13642 13642 MT ATP6 ATP6 28.010565 94.897791 28.010565 67.887226 47.9488955 1.680778608 0.124577 54 14 SH8591 8591 snR19 / U1 RNA U1 451 468 28.440422 76.917944 52.679183 1.721639031 0.031876 54 15 SH15988 15988 YDL136W_4_217600_218367_INTRON_4_408 intron 40.143295 134.320432 40.143295 95.177137 67.660216 1.83033338 0.103926 54 16 SH20314 20314 YER007C-A spliced 29.916966 89.598377 59.7576715 1.776393667 -0.068923 54 17 SH2724 2724 Pro5 tRNA 1 13 233.934755 328.011576 280.9731655 2.448664844 -0.156928 54 18 SH15770 15770 YCR097W_3_293828_294314_INTRON_106_159 intron 28.84196 106.828866 28.84196 78.986906 53.914433 1.731705042 0.031717 54 19 SH13763 13763 MT COB intronic 26.612511 103.612822 26.612511 78.000311 52.306411 1.718554922 -0.10728 54 20 SH5970 5970 snR36 snR36 306 325 26.225916 74.748112 50.487014 1.703179686 -0.094591 54 21 SH1585 1585 Leu4 tRNA 96 112 41.740326 96.009659 68.8749925 1.838061565 0.11806 54 22 SH20375 20375 YER179W spliced 28.269712 83.071636 55.670674 1.745626479 -0.056525 54 23 SH4587 4587 U3b (snR17b) 3' 26.211088 69.726874 47.968981 1.680960493 -0.028952 54 24 SH4124 4124 SRP RNA SRP RNA 511 523 32.720199 94.622441 63.67132 1.803943854 -0.056362 54 25 SH19218 19218 YPL081W_16_404945_406039_INTRON_8_508 intron 25.637762 101.685465 25.637762 77.047703 51.3427325 1.710478978 -0.167347 54 26 SH19593 19593 AEP2/ATP13 2.1 29.547832 83.085369 56.3166005 1.750636431 0.026627 54 27 SH8994 8994 snR17a / U3a U3a 256 270 29.353386 79.285991 54.3196885 1.734957271 0.06105 54 28 SH14662 14662 MT 21S rRNA 21S rRNA4 25.068938 92.325441 25.068938 68.256503 46.6627205 1.668970055 -0.093346 54 29 SH7414 7414 snR69 5' 29.607377 87.850959 58.729168 1.768853848 -0.052377 54 30 SH4924 4924 snR9 snR9 26 44 28.204689 80.152507 54.178598 1.733827762 -0.025048 54 31 SH15777 15777 YDL012C_4_431513_431104_INTRON_46_131 intron 29.226125 117.466831 29.226125 89.240706 59.2334155 1.772566776 -0.094005 54 32 SH17339 17339 YIL018W_9_316766_317930_INTRON_5_404 intron 27.468328 105.000076 27.468328 78.531748 53.000038 1.724276181 -0.05444 54 33 SH7015 7015 snR60 3' 486.693233 481.951732 484.3224825 2.68513463 0.153397 54 34 SH4426 4426 telomerase RNA telomerase 1166 1188 27.212681 70.789508 49.0010945 1.690205781 0.028753 54 35 SH3956 3956 RNase MRP RNaseMRP 196 211 31.128229 91.397028 61.2626285 1.787195626 -0.04655 54 36 SH2005 2005 Lys3 5' flank 28.037691 69.353812 48.6957515 1.687491072 0.105932 54 37 SH1808 1808 Leu8 tRNA 66 80 43.477003 103.344917 73.41096 1.865760903 0.002092 54 38 SH7954 7954 snoRNA cluster 2 5' 26.137682 100.320066 26.137682 75.182384 50.660033 1.704665468 -0.10664 54 39 SH17030 17030 YGR183C_7_859471_859058_INTRON_4_216 exon/intron 26.792719 103.992489 26.792719 78.19977 52.4962445 1.720128236 -0.097121 54 40 SH6391 6391 snR43 196-209 3' 196 29.472236 87.557692 58.514964 1.767266942 -0.053328 54 41 SH18784 18784 YNL301C_14_64561_63569_INTRON_113_544 5' exon 29.472302 119.682254 29.472302 91.209952 60.341127 1.780613417 -0.116543 54 42 SH15824 15824 YDL064W_4_337486_338069_INTRON_39_148 intron 30.424951 123.123436 30.424951 93.698485 62.061718 1.792823794 -0.115607 54 43 SH19956 19956 YBL059C-A spliced 26.802155 71.647223 49.224689 1.692182981 -0.012078 54 44 SH9131 9131 snR7 U5 RNA 5' 26.703511 69.855676 48.2795935 1.683763605 0.005121 54 45 SH11390 11390 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3836 3856 2047.751975 2090.557153 2069.154564 3.315792933 -0.283433 54 46 SH1676 1676 Leu6 5' flank 29.334135 79.88502 54.6095775 1.737268817 0.052278 54 47 SH18003 18003 YLR287C-A_12_713158_712537_INTRON_4_433 intron 29.407217 116.248996 29.407217 87.841779 58.624498 1.768079137 -0.061295 54 48 SH12592 12592 MT_15S MT_15S 29.036804 95.426679 29.036804 67.389875 48.2133395 1.683167214 0.200928 54 49 SH11407 11407 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3921 3936 30.75655 88.511849 59.6341995 1.775495394 -0.013005 54 50 SH3526 3526 Tyr2 5' flank 27.290864 72.069694 49.680279 1.696184026 0.01708 54 51 SH3359 3359 Thr3 3' flank 31.087741 88.054678 59.5712095 1.775036418 0.009341 54 52 SH17501 17501 YJL041W_10_365480_368069_INTRON_2_119 3' exon 27.096295 102.734597 27.096295 76.638302 51.8672985 1.714893628 -0.055698 54 53 SH12490 12490 MT_tRNA Pro 5' 32.048729 125.399811 32.048729 94.351082 63.1999055 1.800716429 -0.068253 54 54 SH1156 1156 His1 tRNA 1 17 135.841282 207.948871 171.8950765 2.235263438 -0.067755 54 55 SH13417 13417 MT COX1 intronic 27.239229 103.675916 27.239229 77.436687 52.337958 1.718816774 -0.056162 54 56 SH15727 15727 YBR230C_2_680008_679507_INTRON_12_108 5' exon 29.383067 121.528753 29.383067 93.145686 61.2643765 1.787208018 -0.15309 54 57 SH16720 16720 YGL031C_7_438393_437938_INTRON_1_456 3' exon 33.879891 129.03705 33.879891 96.157159 65.018525 1.813037113 -0.059265 54 58 SH16827 16827 YGL178W_7_167356_170575_INTRON_4_643 intron 140.909706 345.497058 140.909706 205.587352 173.248529 2.238669556 -0.004699 54 59 SH10797 10797 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 871 890 27.642635 73.286027 50.464331 1.70298452 0.025684 54 60 SH12841 12841 MT COX1 COX1ai1 25.889028 100.699999 25.889028 75.810971 50.8499995 1.706290953 -0.133037 54 61 SH5192 5192 snR13 116-124 + 3' 116 28.304301 68.642659 48.47348 1.6855042 0.134048 54 62 SH7604 7604 snR189 snR189 91 108 30.128144 86.411567 58.2698555 1.765443941 -0.003484 54 63 SH9251 9251 snR6 / U6 RNA 3' 29.83155 90.933065 60.3823075 1.780909705 -0.095624 54 64 SH13795 13795 MT COB intronic 27.830368 95.060749 27.830368 68.230381 48.0303745 1.681515973 0.10731 54 65 SH4246 4246 telomerase RNA telomerase 266 280 28.207082 82.898269 55.5526755 1.74470498 -0.058612 54 66 SH13891 13891 MT COB intronic 27.96347 113.703341 27.96347 86.739871 57.3516705 1.758546072 -0.12031 54 67 SH19601 19601 AEP2/ATP13 2.1 27.212968 68.471069 47.8420185 1.679809495 0.060727 54 68 SH7253 7253 snR65 snR65 41 59 28.785285 91.773466 60.2793755 1.780168744 -0.15764 54 69 SH5444 5444 snR31 3' 30.483759 81.240681 55.86222 1.747118191 0.107678 54 70 SH6132 6132 snR39B snR39B 1 18 43.689746 99.642279 71.6660125 1.855313241 0.080279 54 71 SH10975 10975 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1761 1774 35255.38903 18210.52333 26732.95618 4.427046986 0.002727 54 72 SH1433 1433 Leu2 5' flank 31.321405 91.545301 61.433353 1.78840422 -0.040777 54 73 SH5601 5601 snR34 5' 26.882922 76.244735 51.5638285 1.712345155 -0.065963 54 74 SH7532 7532 snR79 snR79 1 20 79.340985 123.377017 101.359001 2.005862321 0.231022 54 75 SH7075 7075 snR62 3' 27.61765 81.959893 54.7887715 1.738691563 -0.087004 54 76 SH20114 20114 YDL075W spliced 25.935536 80.290685 53.1131105 1.725201736 -0.184806 54 77 SH21005 21005 YML094W spliced 28.820038 80.885323 54.8526805 1.739197855 0.006505 54 78 SH7993 7993 snoRNA cluster 2 intergenic 31.99105 112.845716 31.99105 81.854666 56.922858 1.755286697 0.160625 54 79 SH16174 16174 YDR305C_4_1073479_1072737_INTRON_88_176 exon/intron 30.33689 110.216016 30.33689 80.879126 55.608008 1.745137338 0.103228 54 80 SH12800 12800 MT COX1 COX1ai1 28.2052 113.92191 28.2052 86.71671 57.460955 1.75937284 -0.103825 54 81 SH6719 6719 snR49 snR49 121 138 28.057179 72.545969 50.301574 1.701581575 0.06409 54 82 SH12315 12315 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.167861 146.036564 37.167861 109.868703 73.518282 1.86639535 -0.255519 54 83 SH13802 13802 MT COB intronic 29.797421 106.230326 29.797421 77.432905 53.615163 1.729287631 0.113018 54 84 SH7259 7259 snR65 snR65 71 88 27.439373 75.89327 51.6663215 1.713207542 -0.022211 54 85 SH16021 16021 YDL189W_4_122079_123590_INTRON_1_99 intron 29.614689 100.931139 29.614689 72.31645 50.9655695 1.707276881 0.169871 54 86 SH11141 11141 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2591 2607 5968.46623 2977.25105 4472.85864 3.650585173 0.551153 54 87 SH12907 12907 MT COX1 COX1ai2 30.911489 105.799987 30.911489 75.888498 53.3999935 1.727541204 0.20235 54 88 SH8513 8513 snR19 / U1 RNA U1 61 82 28.299115 73.457624 50.8783695 1.706533185 0.068578 54 89 SH3324 3324 Thr3 5' flank 28.06112 74.155788 51.108454 1.708492744 0.043194 54 90 SH3072 3072 Ser3 tRNA 56 71 32.242488 74.343997 53.2932425 1.726672145 0.302368 54 91 SH21194 21194 YOL121C spliced 37.74921 111.818518 74.783864 1.873807901 -0.278828 54 92 SH14198 14198 MT COB Exon6 30.23307 158.117069 30.23307 128.883999 79.5585345 1.900686775 -0.754676 54 93 SH1085 1085 Gly4 5' flank 32.720228 116.654359 74.6872935 1.873246722 -0.483992 54 94 SH9950 9950 RUF5-1 RUF5-1 556 573 30.529489 106.019262 68.2743755 1.834257736 -0.346534 54 95 SH3567 3567 Tyr2 3' flank 30.407154 83.191001 56.7990775 1.754341282 0.067611 54 96 SH18505 18505 YMR194W_13_651144_651909_INTRON_17_479 intron 28.004617 113.845361 28.004617 86.840744 57.4226805 1.759083462 -0.118703 54 97 SH6179 6179 snR40 5' 41.210387 94.821482 68.0159345 1.832610669 0.133233 54 98 SH8607 8607 snR19 / U1 RNA U1 531 548 29.85392 71.136765 50.4953425 1.703251322 0.201497 54 99 SH10561 10561 RUF8 RUF8 731 748 26.785802 66.686601 46.7362015 1.669653412 0.055597 54 100 SH21295 21295 YPL198W spliced 33.810094 91.193998 62.502046 1.795894234 0.046587 54 101 SH3737 3737 Val4 5' flank 139.777549 316.171702 227.9746255 2.357886511 -0.735119 54 102 SH7811 7811 snoRNA cluster1 intergenic 157.459054 574.309005 157.459054 417.849951 287.6545025 2.458871176 -1.048086 54 103 SH5323 5323 snR30 snR30 466 480 55.798918 271.013851 163.4063845 2.213269021 -1.56556 54 104 SH2095 2095 Lys4 3' flank 3.014377 12.40479 7.7095835 0.887030917 -0.219018 55 2 SH7620 7620 snR189 snR189 171 183 45.909068 102.357253 74.1331605 1.870012516 0.068221 55 3 SH14487 14487 MT 21S rRNA 21S rRNA3 23.184455 87.521457 23.184455 65.337002 44.2607285 1.646018558 -0.194993 55 4 SH7400 7400 snR69 5' 27.423203 79.316011 53.369607 1.727294005 -0.067487 55 5 SH2217 2217 Phe1 5' flank 35.827181 94.753152 65.2901665 1.814847776 0.018371 55 6 SH11636 11636 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5066 5083 81.403935 115.671333 98.537634 1.99360213 0.376764 55 7 SH4340 4340 telomerase RNA telomerase 736 755 29.460994 61.823473 45.6422335 1.659366888 0.311585 55 8 SH14923 14923 MT tRNA Tyr 3' 26.045582 95.24992 26.045582 70.204338 48.12496 1.682370382 -0.0477 55 9 SH2947 2947 Ser1 5' flank 30.959474 81.952646 56.45606 1.751710566 0.114905 55 10 SH5981 5981 snR36 3' 26.168316 67.846391 47.0073535 1.672165801 -0.005863 55 11 SH8090 8090 snoRNA cluster 2 3' 29.652769 110.664403 29.652769 82.011634 55.8322015 1.746884753 0.04633 55 12 SH14554 14554 MT 21S rRNA 21S rRNA3 28.208138 105.331594 28.208138 78.123456 53.165797 1.725632329 0.000854 55 13 SH12464 12464 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 47.885833 138.888503 47.885833 92.00267 69.9442515 1.844752027 0.320675 55 14 SH5820 5820 snR35 snR35 286 300 29.632982 91.729986 60.681484 1.783056193 -0.118061 55 15 SH21444 21444 TH304 - control cDNA - flipped; WTP_226 28.47841 73.384854 50.931632 1.706987592 0.08147 55 16 SH6392 6392 snR43 201-209 + 3' 201 24.970628 63.139134 44.054881 1.643994032 -0.021494 55 17 SH4284 4284 telomerase RNA telomerase 456 470 41.117225 93.085802 67.1015135 1.826732316 0.169476 55 18 SH19049 19049 YOR234C_15_779404_778554_INTRON_20_546 intron 26.159816 108.266139 26.159816 83.106323 54.6330695 1.737455602 -0.203092 55 19 SH516 516 Asp2 3' flank 37.729202 98.12366 67.926431 1.832038796 -0.00999 55 20 SH2680 2680 Pro4 tRNA-intron/exon 66 78 101.842543 162.49053 132.1665365 2.121121509 0.012856 55 21 SH12586 12586 MT_15S MT_15S 26.055586 98.323306 26.055586 73.26772 49.661653 1.696021171 -0.087944 55 22 SH16206 16206 YDR381W_4_1236547_1237993_INTRON_286_1051 5' exon 30.715281 109.033494 30.715281 79.318213 55.016747 1.740494908 0.146096 55 23 SH6864 6864 snR56 5' 35.277309 93.552911 64.41511 1.808987753 0.031037 55 24 SH1872 1872 Leu9 101 + 3' flank 101 30.393368 75.306133 52.8497505 1.723042941 0.178213 55 25 SH2720 2720 Pro5 5' flank 34.196497 90.933507 62.565002 1.796331463 0.062109 55 26 SH6676 6676 snR49 5' 27.07578 88.224666 57.650223 1.760800992 -0.198086 55 27 SH646 646 Gln2 tRNA 16 32 28.759198 76.018552 52.388875 1.719239072 0.064654 55 28 SH8639 8639 snR19 / U1 RNA 3' 26.315766 67.283154 46.79946 1.670240842 0.012957 55 29 SH8176 8176 snoRNA cluster 3; snR70 37.003972 130.483352 37.003972 94.47938 65.741676 1.817840772 0.05187 55 30 SH19084 19084 YOR293W_15_867094_867848_INTRON_53_489 intron 27.519748 110.217135 27.519748 83.697387 55.6085675 1.745141708 -0.114699 55 31 SH19541 19541 CBP1 1.2 26.787592 74.650351 50.7189715 1.705170438 -0.052526 55 32 SH17291 17291 YHR141C_8_382752_381991_INTRON_5_445 intron 27.660266 98.06581 27.660266 71.405544 49.532905 1.694893799 0.051856 55 33 SH10146 10146 RUF6 RUF6 576 593 34.922312 96.702287 65.8122995 1.818307065 -0.044842 55 34 SH4219 4219 telomerase RNA telomerase 131 147 30.841136 79.48317 55.162153 1.741641209 0.15172 55 35 SH11701 11701 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5391 5404 20015.14818 9671.555854 14843.35202 4.171531987 0.263121 55 36 SH20896 20896 YLR287C-A spliced 30.589169 81.22257 55.9058695 1.747457406 0.112643 55 37 SH269 269 Arg4 5' flank 26.086816 75.958061 51.0224385 1.707761211 -0.120241 55 38 SH16826 16826 YGL178W_7_167356_170575_INTRON_4_643 intron 30.980795 119.454428 30.980795 89.473633 60.227214 1.779792774 -0.020001 55 39 SH21822 21822 copy of SH16002 52.324509 102.07612 77.2003145 1.88761907 0.188263 55 40 SH6695 6695 snR49 snR49 1 18 31.94827 81.197589 56.5729295 1.752608668 0.171302 55 41 SH3204 3204 Ser5 3' flank 29.590974 82.988118 56.289546 1.750427746 0.030548 55 42 SH10193 10193 RUF6 RUF6 811 828 33.739645 91.74094 62.7402925 1.797546539 0.032662 55 43 SH16685 16685 YGL030W_7_439087_439634_INTRON_4_233 intron 37.662429 126.659685 37.662429 89.997256 63.8298425 1.805023773 0.16564 55 44 SH20186 20186 YDL191W spliced 37.304491 91.025781 64.165136 1.807299119 0.134403 55 45 SH7914 7914 snoRNA cluster1 intergenic/snR72 30.664664 112.149199 30.664664 82.484535 56.5745995 1.752621488 0.092091 55 46 SH709 709 Gln3 3' flank 28.810873 74.92243 51.8666515 1.714888211 0.082578 55 47 SH13120 13120 MT COX1 COX1ai3 29.103278 114.611007 29.103278 86.507729 57.8055035 1.761969188 -0.051526 55 48 SH18285 18285 YML067C_13_140214_139063_INTRON_32_124 intron 29.016445 102.250815 29.016445 74.23437 51.6254075 1.712863493 0.105211 55 49 SH12909 12909 MT COX1 COX1ai2 28.595614 99.779508 28.595614 72.183894 50.389754 1.702342238 0.105498 55 50 SH21880 21880 copy of SH18400 32.669075 97.198778 64.9339265 1.812471665 -0.112249 55 51 SH21417 21417 Ser4 spliced 39.530476 93.528314 66.529395 1.823013574 0.127314 55 52 SH15564 15564 YBR084C-A_2_415219_414144_INTRON_3_508 exon/intron 28.63645 116.972623 28.63645 89.336173 58.9863115 1.77075124 -0.122939 55 53 SH3313 3313 Thr3 5' flank 29.154857 75.546851 52.350854 1.718923771 0.096631 55 54 SH18642 18642 YNL112W_14_413636_416278_INTRON_1274_2275 5' exon 31.905134 114.670934 31.905134 83.7658 57.835467 1.762194247 0.121323 55 55 SH5834 5834 snR35 snR35 356 374 27.354805 78.508529 52.931667 1.723715572 -0.061947 55 56 SH4901 4901 snR9 5' 31.630611 84.291209 57.96091 1.763135195 0.100084 55 57 SH21742 21742 copy of SH12552 26.467061 70.153875 48.310468 1.684041245 -0.016095 55 58 SH5213 5213 snR30 5' 30.800837 84.331787 57.566312 1.760168407 0.063759 55 59 SH462 462 Asp1 3' flank 33.831002 92.241032 63.036017 1.799588764 0.023934 55 60 SH1005 1005 Gly2 tRNA 16 34 27.733532 74.22671 50.980121 1.707400862 0.019768 55 61 SH13302 13302 MT COX1 COX1-ai5a 25.52546 100.218689 25.52546 75.693229 50.6093445 1.704230712 -0.158782 55 62 SH4463 4463 telomerase RNA 3' 36.781694 97.9054 67.343547 1.828295987 -0.026323 55 63 SH20421 20421 YGL031C spliced 46.093072 113.09601 79.594541 1.900883283 -0.129231 55 64 SH13185 13185 MT COX1 Exon4 27.537898 94.691833 27.537898 68.153935 47.8459165 1.679844878 0.08804 55 65 SH526 526 Cys1 5' flank 603.831976 438.061742 520.946859 2.716793424 0.582719 55 66 SH3091 3091 Ser3 3' flank 33.260279 93.299122 63.2797005 1.801264415 -0.013769 55 67 SH3852 3852 RNaseP RNaseP 226 238 31.227706 78.363514 54.79561 1.738745766 0.189394 55 68 SH21789 21789 copy of SH14649 39.619101 102.969068 71.2940845 1.853053497 -0.069195 55 69 SH5332 5332 snR30 snR30 511 527 27.583143 68.756083 48.169613 1.682773157 0.082761 55 70 SH11111 11111 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2441 2461 26.052781 65.080041 45.566411 1.658644823 0.027035 55 71 SH2756 2756 Pro5 3' flank 29.11981 87.996121 58.5579655 1.767585979 -0.077156 55 72 SH20984 20984 YML067C spliced 26.863266 80.90568 53.884473 1.73146364 -0.126225 55 73 SH1889 1889 Lys1 5' flank 48.808972 111.680944 80.244958 1.904417754 -0.053013 55 74 SH1903 1903 Lys1 5' flank 28.983151 85.251012 57.1170815 1.756766008 -0.035492 55 75 SH11776 11776 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5766 5781 39.765253 93.820758 66.7930055 1.824730986 0.125747 55 76 SH8778 8778 LSR1 / U2 RNA U2 531 546 26.998655 65.055181 46.026918 1.663011895 0.094607 55 77 SH4316 4316 telomerase RNA telomerase 616 630 34.334708 100.125372 67.23004 1.82756337 -0.129985 55 78 SH6043 6043 snR37 snR37 131 152 26.798453 84.377612 55.5880325 1.744981303 -0.172846 55 79 SH13294 13294 MT COX1 COX1-ai5a 27.901712 111.927345 27.901712 85.025633 56.4636725 1.751769122 -0.104491 55 80 SH14839 14839 MT tRNA Asp tRNA Asp 28.412438 106.56539 28.412438 79.152952 53.782695 1.730642561 0.001344 55 81 SH2088 2088 Lys4 3' flank 28.447538 69.355943 48.9017405 1.689324317 0.13385 55 82 SH13988 13988 MT COB intronic 25.883994 99.849726 25.883994 74.965732 50.424863 1.702644727 -0.122653 55 83 SH2042 2042 Lys3 3' flank 30.430813 96.391122 63.4109675 1.80216438 -0.159178 55 84 SH20845 20845 YLR048W spliced 30.22659 93.451094 61.838842 1.791261348 -0.120272 55 85 SH12223 12223 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.513756 101.189752 27.513756 74.675996 51.094876 1.70837735 -0.001345 55 86 SH13080 13080 MT COX1 COX1ai3 29.263835 106.162134 29.263835 77.898299 53.581067 1.729011358 0.072972 55 87 SH5672 5672 snR34 snR34 281 298 28.589888 100.482754 64.536321 1.809804204 -0.307009 55 88 SH17242 17242 YHR079C-A_8_262554_262193_INTRON_114_199 intron/exon 28.038893 123.659865 28.038893 96.620972 62.3299325 1.794696657 -0.272429 55 89 SH8805 8805 LSR1 / U2 RNA U2 666 685 27.699416 72.120751 49.9100835 1.698188296 0.045016 55 90 SH20988 20988 YML067C spliced 27.556342 83.773275 55.6648085 1.745580719 -0.113102 55 91 SH18573 18573 YNL012W_14_609682_611661_INTRON_106_189 3' exon 29.780448 175.685106 29.780448 146.904658 88.342553 1.946169946 -1.035591 55 92 SH13211 13211 MT COX1 COX1-ai4 27.807821 91.015533 27.807821 64.207712 46.0077665 1.66283115 0.164059 55 93 SH6720 6720 snR49 snR49 126 147 30.169277 70.354124 50.2617005 1.701237178 0.232372 55 94 SH20311 20311 YER007C-A spliced 27.959716 79.026872 53.493294 1.728299342 -0.027324 55 95 SH16518 16518 YER117W_5_396765_397649_INTRON_43_513 3' exon 32.252707 143.193117 32.252707 111.94041 72.0965585 1.857914534 -0.410752 55 96 SH16824 16824 YGL178W_7_167356_170575_INTRON_4_643 intron 27.834352 130.923131 27.834352 104.088779 65.9615655 1.819290954 -0.397398 55 97 SH10764 10764 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 706 726 30.055264 101.07821 65.566737 1.816683571 -0.262999 55 98 SH12684 12684 MT tRNA Trp 3' 26.561271 93.105031 26.561271 67.54376 47.0525155 1.672582846 0.027131 55 99 SH12867 12867 MT COX1 COX1ai1 26.504568 90.74226 26.504568 65.237692 45.87113 1.661539439 0.056712 55 100 SH4657 4657 snR3 3' 25.863893 72.425954 49.1449235 1.691478663 -0.091076 55 101 SH4767 4767 snR5 snR5 6 23 27.180106 106.70733 66.943718 1.825709829 -0.467669 55 102 SH18800 18800 YNL301C_14_64561_63569_INTRON_113_544 intron 232.440058 803.99153 232.440058 572.551472 402.495765 2.604761315 -1.066909 55 103 SH2571 2571 Pro2 tRNA 91 103 66.118393 159.534069 112.826231 2.052410081 -0.431492 55 104 SH5636 5636 snR34 snR34 101 118 3.911755 15.292682 9.6022185 0.982371584 -0.201403 56 2 SH8763 8763 LSR1 / U2 RNA U2 456 475 35.066272 70.770975 52.9186235 1.723608539 0.508549 56 3 SH17575 17575 YJL191W_10_73786_74610_INTRON_11_418 5' exon 27.060962 120.000915 27.060962 93.939953 60.5004575 1.781758659 -0.276412 56 4 SH19076 19076 YOR293W_15_867094_867848_INTRON_53_489 intron 35.134261 126.551927 35.134261 92.417666 63.7759635 1.804657028 0.052357 56 5 SH17679 17679 YKL006W_11_431544_432358_INTRON_130_527 intron 47.542403 138.763459 47.542403 92.221056 69.8817295 1.844363645 0.309697 56 6 SH21628 21628 copy of SH7733 27.434862 81.857862 54.646362 1.737561255 -0.098269 56 7 SH19526 19526 CBP1 1.2 35.131788 94.092087 64.6119375 1.810312764 0.015835 56 8 SH10807 10807 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 921 939 1817.47034 1389.326866 1603.398603 3.205041501 0.203194 56 9 SH5893 5893 snR36 5' 30.759269 107.921918 69.3405935 1.840987555 -0.376244 56 10 SH7257 7257 snR65 snR65 61 80 26.125063 93.943977 60.03452 1.778401043 -0.328323 56 11 SH13765 13765 MT COB intronic 28.689737 134.962196 28.689737 107.272459 67.981098 1.832388175 -0.423521 56 12 SH20265 20265 YDR424C spliced 29.550216 122.238799 75.8945075 1.880210347 -0.664285 56 13 SH3873 3873 RNaseP RNaseP 331 343 46.133819 127.140523 86.637171 1.937704263 -0.361648 56 14 SH5278 5278 snR30 snR30 241 257 27.625043 123.473725 75.549384 1.878230928 -0.741469 56 15 SH19736 19736 Negative Control 28.24444 140.582371 84.4134055 1.926411421 -0.98986 56 16 SH6978 6978 snR60 5' 33.037923 176.835557 104.93674 2.020927568 -1.317156 56 17 SH12427 12427 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.328801 158.218871 27.328801 131.89007 79.6094355 1.900964544 -0.885327 56 18 SH12908 12908 MT COX1 COX1ai2 28.133944 104.078007 28.133944 76.944063 52.5390035 1.720481831 0.011122 56 19 SH17311 17311 YHR203C_8_505526_504472_INTRON_15_283 intron 24.107674 97.068304 24.107674 73.96063 49.034152 1.690498669 -0.246615 56 20 SH589 589 Gln1 5' flank - tRNA3 5' flank 3 44.889585 113.109787 78.999686 1.897625365 -0.153103 56 21 SH12702 12702 MT ORF 8 (hypothetical) ORF8 26.514462 103.445803 26.514462 77.931341 52.2229015 1.717860998 -0.113537 56 22 SH8811 8811 LSR1 / U2 RNA U2 696 710 450.818088 507.598915 479.2085015 2.680524514 -0.027842 56 23 SH15246 15246 MT tRNA fMet tRNA 26.708743 99.524152 26.708743 73.815409 50.262076 1.701240423 -0.047409 56 24 SH16205 16205 YDR381W_4_1236547_1237993_INTRON_286_1051 5' exon 30.738452 119.665724 30.738452 89.927272 60.332862 1.780553927 -0.038336 56 25 SH5966 5966 snR36 snR36 286 304 25.562928 73.122733 49.3428305 1.693224059 -0.122805 56 26 SH12086 12086 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7316 7333 48.821775 103.678176 76.2499755 1.882239708 0.095355 56 27 SH3078 3078 Ser3 tRNA 86 100 1269.266639 1417.159604 1343.213122 3.128144926 -0.301334 56 28 SH5640 5640 snR34 snR34 121 133 38.037088 96.824392 67.43074 1.828857926 0.024191 56 29 SH20163 20163 YDL130W spliced 35.951524 88.132552 62.042038 1.792686055 0.168419 56 30 SH2492 2492 Pro1 5' flank 35.498605 90.427411 62.963008 1.799085468 0.105384 56 31 SH3254 3254 Thr1 3' flank 26.575888 79.174446 52.875167 1.723251752 -0.124834 56 32 SH2337 2337 Phe3 tRNA 11 25 107.70544 184.463425 146.0844325 2.164603938 -0.140113 56 33 SH6090 6090 snR37 snR37 366 383 30.376512 82.382063 56.3792875 1.751119583 0.081378 56 34 SH19619 19619 RNA14 1.1 27.506061 94.145593 60.825827 1.784088022 -0.257959 56 35 SH20966 20966 YML026C spliced 26.800548 75.788075 51.2943115 1.710069205 -0.066109 56 36 SH3419 3419 Trp1 5' flank 35.428442 96.44878 65.938611 1.819139794 -0.027213 56 37 SH20357 20357 YER117W spliced 28.598703 81.825229 55.211966 1.742033212 -0.019588 56 38 SH16591 16591 YFL034C-A_6_64931_64242_INTRON_13_333 intron 26.484153 95.84702 26.484153 70.362867 48.42351 1.685056266 -0.017706 56 39 SH16815 16815 YGL178W_7_167356_170575_INTRON_4_643 intron 31.297459 119.704846 31.297459 89.407387 60.352423 1.780694711 -0.005245 56 40 SH5208 5208 snR13 3' 27.201948 68.035473 47.6187105 1.677777631 0.066071 56 41 SH7581 7581 snR189 5' 27.432285 84.518008 55.9751465 1.747995239 -0.130465 56 42 SH6042 6042 snR37 snR37 126 145 27.068058 86.627277 56.8476675 1.75471265 -0.180329 56 43 SH1669 1669 Leu6 5' flank 26.47266 66.9881 46.73038 1.669599313 0.028622 56 44 SH21374 21374 Leu8_9 spliced 32.811614 87.299144 60.055379 1.778551912 0.094905 56 45 SH13613 13613 MT ATP6 5' 30.592535 109.290202 30.592535 79.697667 55.145101 1.741506936 0.133772 56 46 SH18213 18213 YML025C_13_225365_224406_INTRON_28_126 intron 33.131937 126.017233 33.131937 93.885296 63.5086165 1.802832652 -0.029792 56 47 SH1725 1725 Leu7 5' flank 31.159679 85.270043 58.214861 1.765033865 0.062146 56 48 SH14573 14573 MT 21S rRNA 21S / intronic 28.894361 113.23766 28.894361 85.343299 57.11883 1.756779303 -0.042357 56 49 SH19493 19493 YPT1 30.724531 94.424087 62.574309 1.796396062 -0.114426 56 50 SH16106 16106 YDR064W_4_579453_580447_INTRON_22_560 exon/intron 27.92599 114.462032 27.92599 87.536042 57.731016 1.761409201 -0.131985 56 51 SH17949 17949 YLR128W_12_398531_399434_INTRON_4_97 intron/exon 27.661299 113.127278 27.661299 86.465979 57.063639 1.756359464 -0.137615 56 52 SH10114 10114 RUF6 RUF6 416 438 52.212494 133.844955 93.0287245 1.968617066 -0.344646 56 53 SH1383 1383 Leu1 5' flank - tRNA5 5 26.291202 75.165339 50.7282705 1.705250056 -0.095144 56 54 SH14997 14997 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.258333 118.163493 29.258333 89.90516 59.5817465 1.775113229 -0.104006 56 55 SH8899 8899 LSR1 / U2 RNA U2 1136 1152 29.559944 73.283619 51.4217815 1.711147119 0.153083 56 56 SH2255 2255 Phe1 3' flank 26.777298 84.715342 55.74632 1.746216203 -0.178333 56 57 SH14414 14414 MT 21S rRNA 21S rRNA3 39.203739 147.612676 39.203739 109.408937 74.306338 1.871025859 -0.202237 56 58 SH5633 5633 snR34 snR34 86 105 27.493323 68.954308 48.2238155 1.683261569 0.073717 56 59 SH10578 10578 RUF8 RUF8 816 832 31.397032 74.356827 52.8769295 1.723266228 0.25213 56 60 SH15835 15835 YDL075W_4_322225_322987_INTRON_58_478 intron 58.632623 166.073479 58.632623 108.440856 83.5367395 1.92187752 0.172986 56 61 SH2279 2279 Phe2 5' flank - tRNA10 10 32.23182 91.145139 61.6884795 1.790204066 0.004349 56 62 SH15060 15060 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.37363 90.748363 27.37363 64.374733 45.8741815 1.661568329 0.13126 56 63 SH6174 6174 snR40 5' 27.286038 74.681552 50.983795 1.707432159 -0.017422 56 64 SH14196 14196 MT COB Exon6 27.409893 101.423799 27.409893 75.013906 51.2118995 1.709370885 -0.012961 56 65 SH4760 4760 snR5 5' 27.264821 84.873545 56.069183 1.748724228 -0.146205 56 66 SH5816 5816 snR35 snR35 266 282 29.087054 87.17898 58.133017 1.764422863 -0.06423 56 67 SH5110 5110 snR11 snR11 151 165 29.667072 81.589852 55.628462 1.745297053 0.052401 56 68 SH6230 6230 snR42 5' 27.919735 80.577191 54.248463 1.734387438 -0.049472 56 69 SH10961 10961 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1691 1709 22079.31057 15379.5693 18729.43993 4.272524791 -0.341719 56 70 SH11754 11754 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5656 5674 2620.867216 2484.210864 2552.53904 3.406972393 -0.23386 56 71 SH13442 13442 MT COX1 intronic 26.363935 94.791551 26.363935 69.427616 47.8957755 1.680297209 -0.013628 56 72 SH9031 9031 snR17a / U3a U3a 441 456 793.47294 823.456425 808.4646825 2.907661053 -0.066586 56 73 SH14640 14640 MT 21S rRNA sce1 / intronic 25.050659 89.438155 25.050659 65.387496 45.2190775 1.655321698 -0.051071 56 74 SH8885 8885 LSR1 / U2 RNA U2 1066 1083 27.154437 79.705627 53.430032 1.727785434 -0.090951 56 75 SH13344 13344 MT COX1 COX1-ai5a 24.647653 95.25629 24.647653 71.608637 48.128145 1.682399123 -0.172945 56 76 SH5819 5819 snR35 snR35 281 295 45.843237 119.38516 82.6141985 1.917054694 -0.241902 56 77 SH9004 9004 snR17a / U3a U3a 306 321 44.897643 96.561859 70.729751 1.849602129 0.167348 56 78 SH16345 16345 YDR500C_4_1450856_1450201_INTRON_8_396 intron 28.844088 117.576712 28.844088 89.732624 59.288356 1.772969408 -0.120119 56 79 SH8110 8110 snoRNA cluster 3; 5' 27.805789 104.833714 27.805789 78.027925 52.916857 1.723594041 -0.024989 56 80 SH8922 8922 LSR1 / U2 RNA 3' 33.151576 100.941738 67.046657 1.826377128 -0.176447 56 81 SH779 779 Glu1 5' flank 30.76162 78.371197 54.5664085 1.73692537 0.160962 56 82 SH4346 4346 telomerase RNA telomerase 766 785 28.214193 86.584359 57.399276 1.758906415 -0.101695 56 83 SH17147 17147 YHR012W_8_129473_130440_INTRON_49_167 5' exon 29.138675 100.548486 29.138675 72.409811 50.774243 1.705643457 0.138047 56 84 SH11000 11000 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1886 1902 4738.52444 3111.549216 3925.036828 3.593843736 0.180925 56 85 SH15178 15178 MT COX3 5' / cox3 29.436867 99.368237 29.436867 70.93137 50.1841185 1.7005663 0.177885 56 86 SH15412 15412 YBL059C-A_2_110500_110086_INTRON_35_119 3' exon 31.105831 118.651865 31.105831 88.546034 59.8259325 1.776889477 0.001511 56 87 SH16511 16511 YER117W_5_396765_397649_INTRON_43_513 intron 28.123961 99.970153 28.123961 72.846192 50.4850765 1.703163019 0.064705 56 88 SH15182 15182 MT COX3 cox3 36.223633 131.433084 36.223633 96.209451 66.216542 1.820966497 -0.003196 56 89 SH12612 12612 MT_15S MT_15S 40.183401 149.759229 40.183401 110.575828 75.3796145 1.877253912 -0.202601 56 90 SH11830 11830 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6036 6051 24732.86056 15682.1304 20207.49548 4.30551249 -0.224294 56 91 SH4709 4709 snR4 snR4 81 100 27.21498 64.013041 45.6140105 1.659098258 0.125473 56 92 SH13525 13525 MT COX1 intronic 27.435801 87.363608 27.435801 60.927807 44.181804 1.645243445 0.190714 56 93 SH19273 19273 YPL143W_16_282121_282969_INTRON_20_544 intron 29.804094 114.377732 29.804094 85.573638 57.688866 1.761092002 -0.002884 56 94 SH5731 5731 snR34 3' 29.845459 82.054297 55.949878 1.747799144 0.058013 56 95 SH21318 21318 YPL249C-A spliced 34.213939 93.577291 63.895615 1.805471055 0.004348 56 96 SH1723 1723 Leu7 5' flank 30.004938 82.583259 56.2940985 1.750462869 0.061132 56 97 SH7255 7255 snR65 snR65 51 70 30.251882 83.736808 56.994345 1.755831767 0.050643 56 98 SH15281 15281 MT 9S rRNA 9S 29.990741 111.455591 29.990741 82.46485 56.2277955 1.749951057 0.062166 56 99 SH20903 20903 YLR316C spliced 28.660616 86.307491 57.4840535 1.759547385 -0.068909 56 100 SH4380 4380 telomerase RNA telomerase 936 948 42.520597 108.369763 75.44518 1.877631499 -0.113271 56 101 SH17666 17666 YKL006C-A_11_430270_429836_INTRON_37_177 intron 55.823446 227.210619 55.823446 172.387173 114.1053095 2.057305853 -0.751866 56 102 SH17090 17090 YHL001W_8_104270_105084_INTRON_130_527 intron 175.705385 619.942014 175.705385 445.236629 310.471007 2.49202105 -1.014322 56 103 SH13389 13389 MT COX1 intronic 140.931235 499.694797 140.931235 359.763562 250.3473985 2.398543083 -0.939192 56 104 SH17989 17989 YLR275W_12_694378_694800_INTRON_6_95 3' exon 6.234345 26.252267 6.234345 21.017922 13.6261335 1.13437264 -0.07982 57 2 SH17663 17663 YKL006C-A_11_430270_429836_INTRON_37_177 5' exon 25.535865 101.123657 25.535865 76.587792 51.0618285 1.708096363 -0.169272 57 3 SH5327 5327 snR30 snR30 486 502 34.025396 100.219338 67.122367 1.826867263 -0.139625 57 4 SH14682 14682 MT 21S rRNA 21S rRNA4 23.575729 86.594719 23.575729 64.01899 43.7973595 1.641447928 -0.143002 57 5 SH4777 4777 snR5 snR5 56 73 25.506519 80.211857 52.859188 1.723120487 -0.215851 57 6 SH21072 21072 YMR225C spliced 27.623198 84.302862 55.96303 1.74790122 -0.114846 57 7 SH16880 16880 YGL189C_7_148970_148233_INTRON_1_368 5' exon 1457.020912 2809.584305 1457.020912 1353.563393 1405.292153 3.147766621 -0.047327 57 8 SH12889 12889 MT COX1 COX1ai1 27.325262 96.450318 27.325262 70.125056 48.725159 1.687753265 0.045753 57 9 SH6287 6287 snR42 snR42 216 232 25.839305 79.468932 52.6541185 1.721432346 -0.181958 57 10 SH2692 2692 Pro4 3' flank 43.899114 107.109196 75.504155 1.877970852 -0.062193 57 11 SH9016 9016 snR17a / U3a U3a 366 384 27.736125 69.805202 48.7706635 1.688158664 0.078881 57 12 SH19069 19069 YOR293W_15_867094_867848_INTRON_53_489 intron 27.222609 104.743425 27.222609 78.520816 52.8717125 1.723223377 -0.071232 57 13 SH9836 9836 RUF5-1 5' - 7 -14 7 26.618926 68.824486 47.721706 1.678715961 0.013282 57 14 SH17616 17616 YJR021C_10_469271_468247_INTRON_317_396 intron 34.673318 159.213529 34.673318 125.540211 80.1067645 1.903669191 -0.586449 57 15 SH21547 21547 copy of SH4256 28.348211 135.578785 81.963498 1.913620485 -0.912091 57 16 SH5455 5455 snR32 5' 28.387204 64.135766 46.261485 1.66521957 0.204848 57 17 SH2497 2497 Pro1 5' flank 31.016089 88.195178 59.6056335 1.775287308 0.003786 57 18 SH16430 16430 YER074W_5_306319_307192_INTRON_4_469 intron 27.767569 109.109529 27.767569 82.34196 55.0547645 1.740794909 -0.08146 57 19 SH18638 18638 YNL096C_14_444312_443395_INTRON_145_489 intron/exon 26.396119 92.824167 26.396119 67.428048 46.9120835 1.671284722 0.016764 57 20 SH10369 10369 RUF7 RUF7 456 471 29.106434 86.291157 57.6987955 1.761166747 -0.047503 57 21 SH16390 16390 YER044C-A_5_239773_238459_INTRON_64_151 exon/intron 29.460154 116.266764 29.460154 87.80661 58.633382 1.768144945 -0.058268 57 22 SH20775 20775 YKL006C-A spliced 32.123759 92.49526 62.3095095 1.794554333 -0.025915 57 23 SH3970 3970 RNase MRP RNaseMRP 266 283 27.338571 71.572792 49.4556815 1.694216191 0.027082 57 24 SH8106 8106 snoRNA cluster 3; 5' 31.482103 110.267709 31.482103 79.785606 55.6338545 1.74533915 0.178767 57 25 SH19989 19989 YBL092W spliced 30.663906 85.47665 58.070278 1.763953905 0.036936 57 26 SH19361 19361 YPR028W_16_623522_624197_INTRON_52_184 5' exon 27.619827 106.891666 27.619827 80.271839 53.945833 1.731957904 -0.066019 57 27 SH655 655 Gln2 tRNA 61 77 28.979276 78.757709 53.8684925 1.731334822 0.043576 57 28 SH4089 4089 SRP RNA SRP RNA 336 348 26.173525 75.248806 50.7111655 1.705103592 -0.104848 57 29 SH21667 21667 copy of SH9402 47.118144 92.277032 69.697588 1.843217749 0.300783 57 30 SH1084 1084 Gly3 3' flank 31.405105 85.945223 58.675164 1.768454312 0.060446 57 31 SH4495 4495 U3b (snR17b) U3b 31 52 26.62328 73.615381 50.1193305 1.700005261 -0.050978 57 32 SH13134 13134 MT COX1 COX1ai3 30.232517 119.034613 30.232517 89.802096 60.0173065 1.778276501 -0.058393 57 33 SH17348 17348 YIL018W_9_316766_317930_INTRON_5_404 intron 28.154366 95.310303 28.154366 68.155937 48.1551515 1.682642754 0.130648 57 34 SH3734 3734 Val3 3' flank 27.680622 72.894307 50.2874645 1.701459739 0.033472 57 35 SH2627 2627 Pro3 tRNA 86 100 40.840907 98.623675 69.732291 1.843433934 0.04473 57 36 SH1803 1803 Leu8 tRNA-intron/exon 41 58 28.651167 85.439037 57.045102 1.756218361 -0.059405 57 37 SH14334 14334 MT VAR1 includes 5’ processing site VAR1 26.283865 96.374921 26.283865 71.091056 48.6874605 1.687417123 -0.042205 57 38 SH9052 9052 snR17a / U3a 3' 28.500226 77.243152 52.871689 1.723223184 0.03161 57 39 SH6053 6053 snR37 snR37 181 197 47.198915 101.119165 74.15904 1.870164099 0.116653 57 40 SH13072 13072 MT COX1 COX1ai3 26.996055 103.341835 26.996055 77.34578 52.1709175 1.717428474 -0.071882 57 41 SH18708 18708 YNL130C_14_381156_379555_INTRON_30_470 intron 27.385823 118.921182 27.385823 92.535359 59.960591 1.777865905 -0.237135 57 42 SH53 53 Ala2 5' flank 27.248419 69.893138 48.5707785 1.686375064 0.043509 57 43 SH8848 8848 LSR1 / U2 RNA U2 881 895 38.453889 100.328575 69.391232 1.841304598 -0.040172 57 44 SH19928 19928 YBL018C spliced 26.76046 69.794549 48.2775045 1.683744813 0.010064 57 45 SH4374 4374 telomerase RNA telomerase 906 922 31.242053 77.244293 54.243173 1.734345086 0.204662 57 46 SH21147 21147 YNL246W spliced 31.220473 90.014198 60.6173355 1.782596843 -0.019005 57 47 SH16472 16472 YER102W_5_362729_363698_INTRON_1_360 intron 31.222876 131.956873 31.222876 101.733997 66.4784365 1.822680797 -0.243555 57 48 SH14360 14360 MT ORF9 and ORF10 (hypothetical) ORF9 28.760817 103.625624 28.760817 75.864807 52.312812 1.718608066 0.066787 57 49 SH16789 16789 YGL103W_7_310965_311925_INTRON_50_560 intron 28.208622 100.392803 28.208622 73.184181 50.6964015 1.704977134 0.066052 57 50 SH9325 9325 RUF1 RUF1 201 220 30.856339 93.558169 62.207254 1.793841031 -0.094445 57 51 SH1164 1164 His1 tRNA 41 56 40279.78127 22064.22546 31172.00336 4.493764714 -0.126164 57 52 SH20780 20780 YKL006W spliced 34.216877 89.067147 61.642012 1.789876806 0.10473 57 53 SH5077 5077 snR11 5' - 7 -14 7 48.976978 101.590532 75.283755 1.876701273 0.138915 57 54 SH6050 6050 snR37 snR37 166 188 26.885038 75.173197 51.0291175 1.707818058 -0.05223 57 55 SH1079 1079 Gly3 3' flank 31.838815 93.586937 62.712876 1.797356718 -0.057357 57 56 SH15155 15155 MT tRNA Val 5' 26.592265 94.015766 26.592265 68.423501 47.507883 1.676765678 0.016959 57 57 SH13646 13646 MT ATP6 ATP6 25.36714 88.797425 25.36714 64.430285 44.8987125 1.652233888 -0.012618 57 58 SH6292 6292 snR42 snR42 241 255 39.57165 98.334311 68.9529805 1.838553043 0.024815 57 59 SH7589 7589 snR189 snR189 16 30 31.60999 89.604699 60.6073445 1.782525256 0.004644 57 60 SH18965 18965 YOL127W_15_80347_81189_INTRON_14_427 3' exon 28.662535 105.593709 28.662535 77.931174 53.2968545 1.726701578 0.033431 57 61 SH12995 12995 MT COX1 COX1ai2 27.384186 98.048618 27.384186 71.664432 49.524309 1.694818425 0.029065 57 62 SH20638 20638 YHR141C spliced 32.444974 86.633426 59.5392 1.774802995 0.091707 57 63 SH850 850 Glu2 tRNA 16 30 553.479683 434.416976 493.9483295 2.693681521 0.484693 57 64 SH20959 20959 YML025C spliced 29.418941 83.261777 56.340359 1.75081961 0.016266 57 65 SH2825 2825 Pro7 5' flank 28.724639 82.259261 55.49195 1.744229986 -0.016606 57 66 SH16877 16877 YGL187C_7_150529_149708_INTRON_1_342 3' exon 30.504404 110.345876 30.504404 80.841472 55.672938 1.745644141 0.11407 57 67 SH4410 4410 telomerase RNA telomerase 1086 1105 28.109951 65.695107 46.902529 1.671196261 0.162895 57 68 SH21364 21364 Ile2_3 spliced 27.726856 85.203441 56.4651485 1.751780475 -0.118427 57 69 SH16709 16709 YGL031C_7_438393_437938_INTRON_1_456 intron 26.808132 101.898536 26.808132 76.090404 51.449268 1.7113792 -0.069384 57 70 SH4635 4635 snR3 snR3 91 108 47.495059 122.849287 85.172173 1.930297728 -0.267272 57 71 SH18567 18567 YNL012W_14_609682_611661_INTRON_106_189 exon/intron 36.291959 131.500175 36.291959 96.208216 66.2500875 1.821186456 -0.001559 57 72 SH2408 2408 Phe4 91 + 3' flank 91 26.44304 70.008255 48.2256475 1.683278067 -0.01585 57 73 SH7158 7158 snR63 3' 25.078931 68.273703 46.676317 1.669096581 -0.092857 57 74 SH15088 15088 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.332118 93.891553 25.332118 69.559435 47.4457765 1.676197559 -0.092334 57 75 SH3559 3559 Tyr2 tRNA 66 78 42.566045 104.375694 73.4708695 1.86611518 -0.036188 57 76 SH888 888 Glu3 5' flank 25.097148 82.240939 53.6690435 1.729723855 -0.270983 57 77 SH6100 6100 snR37 3' 27.986389 88.383772 58.1850805 1.76481164 -0.137564 57 78 SH6164 6164 snR39B 3' 29.247212 70.930945 50.0890785 1.699743042 0.165691 57 79 SH9899 9899 RUF5-1 RUF5-1 301 318 27.75335 71.28095 49.51715 1.694755641 0.060002 57 80 SH4624 4624 snR3 snR3 36 52 209.786786 307.858818 258.822802 2.413002535 -0.189752 57 81 SH15893 15893 YDL082W_4_308423_309387_INTRON_5_369 intron/exon 30.110923 103.562524 30.110923 74.451601 52.281262 1.718346062 0.172048 57 82 SH8577 8577 snR19 / U1 RNA U1 381 398 29.827924 94.343506 62.085715 1.792991687 -0.152745 57 83 SH9956 9956 RUF5-1 RUF5-1 586 602 29.471779 82.41042 55.9410995 1.747730998 0.029937 57 84 SH8931 8931 snR17a / U3a 5' 29.069953 78.70286 53.8864065 1.731479223 0.05016 57 85 SH5048 5048 snR10 3' 28.672724 82.64054 55.656632 1.745516922 -0.024645 57 86 SH4650 4650 snR3 snR3 166 180 30.524498 91.02266 60.773579 1.783714813 -0.066414 57 87 SH11276 11276 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3266 3283 29.994114 69.703568 49.848841 1.697655065 0.230702 57 88 SH5142 5142 snR11 3' 31.533146 99.729829 65.6314875 1.817112247 -0.194699 57 89 SH9933 9933 RUF5-1 RUF5-1 471 490 26.791771 68.479723 47.635747 1.67793298 0.030565 57 90 SH14456 14456 MT 21S rRNA 21S rRNA3 26.744382 103.719279 26.744382 77.974897 52.3596395 1.718996648 -0.09764 57 91 SH6307 6307 snR42 snR42 316 332 37.574373 98.402447 67.98841 1.832434885 -0.019225 57 92 SH17607 17607 YJL205C-A_10_50443_50139_INTRON_33_175 intron 33.390848 211.231632 33.390848 178.840784 106.115816 2.025780118 -1.330061 57 93 SH18368 18368 YMR079W_13_424988_426058_INTRON_10_165 intron 29.357421 151.74059 29.357421 123.383169 76.370295 1.882924468 -0.68889 57 94 SH8006 8006 snoRNA cluster 2 intergenic 27.396623 115.977238 27.396623 89.580615 58.488619 1.767071367 -0.191161 57 95 SH2930 2930 Pro8 3' flank 31.884849 90.679741 61.282295 1.787335021 -0.002218 57 96 SH192 192 Arg2 3' flank 30.052158 67.797736 48.924947 1.689530364 0.261329 57 97 SH15577 15577 YBR084C-A_2_415219_414144_INTRON_3_508 intron 28.205756 95.977445 28.205756 68.771689 48.4887225 1.685640742 0.125529 57 98 SH13520 13520 MT COX1 intronic 28.027327 102.896398 28.027327 75.869071 51.948199 1.715570496 0.018055 57 99 SH14999 14999 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.010999 97.047825 27.010999 71.036826 49.0239125 1.690407968 0.01108 57 100 SH6785 6785 snR50 3' 25.531663 70.264485 47.898074 1.680318051 -0.0869 57 101 SH1045 1045 Gly3 5' flank 23.520736 70.287138 46.903937 1.671209298 -0.242292 57 102 SH18209 18209 YML024W_13_225889_226697_INTRON_4_401 3' exon 155.668539 556.120546 155.668539 401.452007 278.560273 2.444919179 -0.996644 57 103 SH6761 6761 snR50 5' 134.765148 308.225883 221.4955155 2.345364938 -0.737509 57 104 SH20167 20167 YDL136W spliced 7.129669 26.969309 17.049489 1.231711367 -0.289758 58 2 SH1909 1909 Lys1 tRNA 1 13 31.704287 90.432865 61.068576 1.785817793 -0.005601 58 3 SH353 353 Arg5 3' flank 208.40855 327.013897 267.7112235 2.427666579 -0.296983 58 4 SH15350 15350 YBL018C_2_186436_185960_INTRON_48_122 3' exon 44.116779 144.043976 44.116779 100.927197 72.521988 1.860469701 0.062627 58 5 SH5757 5757 snR35 5' 28.677382 70.542891 49.6101365 1.695570422 0.133064 58 6 SH7464 7464 snR71 5' 30.582478 78.657468 54.619973 1.737351481 0.146307 58 7 SH10140 10140 RUF6 RUF6 546 563 52.759349 123.707737 88.233543 1.945633719 -0.18224 58 8 SH19730 19730 Negative Control 29.559435 86.814228 58.1868315 1.764824709 -0.036182 58 9 SH4795 4795 snR5 snR5 146 168 25.701382 77.334443 51.5179125 1.711958257 -0.166139 58 10 SH11828 11828 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6026 6043 11900.27788 4714.303169 8307.290526 3.919459399 0.721868 58 11 SH13662 13662 MT ATP6 ATP6 27.88105 94.420181 27.88105 67.539131 47.7100905 1.67861024 0.120585 58 12 SH10618 10618 RUF8 3' 28.028528 83.930875 55.9797015 1.748030578 -0.082972 58 13 SH2172 2172 Met2 5' flank - tRNA6 6 29.992985 80.773531 55.383258 1.7433785 0.083055 58 14 SH19599 19599 AEP2/ATP13 2.1 29.410198 96.548738 62.979468 1.799198988 -0.207365 58 15 SH19278 19278 YPL143W_16_282121_282969_INTRON_20_544 intron 28.738267 123.164448 28.738267 95.426181 62.082224 1.792967266 -0.220206 58 16 SH19449 19449 CYC1 39.868802 92.57519 66.221996 1.821002267 0.155454 58 17 SH4446 4446 telomerase RNA telomerase 1266 1278 39.212857 93.991593 66.602225 1.823488738 0.110485 58 18 SH20371 20371 YER133W spliced 34.022633 96.907819 65.465226 1.816010671 -0.071462 58 19 SH9002 9002 snR17a / U3a U3a 296 308 28.64282 82.397645 55.5202325 1.744451276 -0.023664 58 20 SH15208 15208 MT COX3 cox3 29.527079 107.852371 29.527079 79.325292 54.4261855 1.735807898 0.071671 58 21 SH9391 9391 RUF1 RUF1 531 548 53.657898 121.046572 87.352235 1.941274021 -0.124103 58 22 SH5750 5750 snR35 5' 30.279675 83.880608 57.0801415 1.756485041 0.049218 58 23 SH15422 15422 YBL072C_2_89435_88518_INTRON_1_308 5' exon 27.822982 102.856088 27.822982 76.033106 51.928044 1.715401964 0.002105 58 24 SH4487 4487 U3b (snR17b) 5' - 10 10 29.861204 98.054034 63.957619 1.805892288 -0.210928 58 25 SH1574 1574 Leu4 tRNA-intron 41 57 29.25155 88.43701 58.84428 1.769704253 -0.078846 58 26 SH18235 18235 YML026C_13_223828_222987_INTRON_48_448 intron 28.465724 113.197606 28.465724 85.731882 57.098803 1.756627004 -0.075065 58 27 SH19879 19879 Negative Control 29.89592 92.126002 61.010961 1.785407866 -0.112902 58 28 SH6852 6852 snR52 3' 25.074735 79.982614 52.5286745 1.720396442 -0.245985 58 29 SH4896 4896 snR8 3' 27.162822 93.516161 60.3394915 1.780601646 -0.264389 58 30 SH4713 4713 snR4 snR4 101 115 32.198702 84.069041 58.1338715 1.764429246 0.127991 58 31 SH19019 19019 YOR182C_15_678792_678190_INTRON_4_414 intron 26.628219 102.193492 26.628219 76.565273 51.596746 1.712622313 -0.088322 58 32 SH14772 14772 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu 27.489839 102.463036 27.489839 75.973197 51.731518 1.713755222 -0.019803 58 33 SH2214 2214 Phe1 5' flank 27.892037 96.938924 62.4154805 1.795292318 -0.28454 58 34 SH18442 18442 YMR142C_13_551206_550205_INTRON_5_406 intron 27.675064 106.960199 27.675064 80.285135 53.9800995 1.732233681 -0.062421 58 35 SH17909 17909 YLR061W_12_263195_263949_INTRON_13_401 intron 29.324695 112.559775 29.324695 84.23508 56.7798875 1.754194528 -0.001416 58 36 SH20019 20019 YBR089C-A spliced 28.696865 90.446107 59.571486 1.775038434 -0.13922 58 37 SH18282 18282 YML067C_13_140214_139063_INTRON_32_124 5' exon 39.714825 135.500593 39.714825 96.785768 68.2502965 1.834104542 0.060526 58 38 SH12618 12618 MT_15S MT_15S 28.408942 123.369348 28.408942 95.960406 62.184674 1.793683362 -0.244268 58 39 SH19707 19707 Negative Control 28.592709 84.071366 56.3320375 1.75075546 -0.047096 58 40 SH13705 13705 MT tRNAGlu (and 5' processing site for COB) tRNA 26.738387 103.601913 26.738387 77.863526 52.3009565 1.718509631 -0.096632 58 41 SH9026 9026 snR17a / U3a U3a 416 431 36.3752 102.693952 69.534576 1.842200811 -0.13396 58 42 SH10602 10602 RUF8 RUF8 936 951 31.762202 79.818366 55.790284 1.746558572 0.189987 58 43 SH1884 1884 Leu9 3' flank 27.188872 74.571279 50.8800755 1.706547747 -0.022874 58 44 SH20277 20277 YDR450W spliced 27.324185 74.682311 51.003248 1.707597834 -0.014741 58 45 SH13937 13937 MT COB Cytbi3 29.620149 113.151309 29.620149 84.53116 57.0756545 1.7564509 0.007792 58 46 SH4057 4057 SRP RNA SRP RNA 176 194 27.061265 73.7546 50.4079325 1.702498885 -0.021367 58 47 SH13350 13350 MT COX1 intronic 29.007934 96.310509 29.007934 68.302575 48.6552545 1.687129749 0.186104 58 48 SH17798 17798 YKL186C_11_93537_92746_INTRON_71_233 3' exon 28.542784 115.403799 28.542784 87.861015 58.2018995 1.764937159 -0.101566 58 49 SH3386 3386 Thr4 tRNA 16 30 30.111106 94.903788 62.507447 1.795931761 -0.149258 58 50 SH220 220 Arg3 5' flank 42.829471 106.418491 74.623981 1.872878414 -0.070213 58 51 SH14969 14969 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.52812 107.267612 29.52812 78.739492 54.133806 1.733468562 0.079158 58 52 SH14714 14714 MT tRNA cys; tRNA his 5' 25.631568 91.928321 25.631568 67.296753 46.4641605 1.667118095 -0.037469 58 53 SH13412 13412 MT COX1 intronic 26.396182 102.827117 26.396182 77.430935 51.9135585 1.715280799 -0.115965 58 54 SH13163 13163 MT COX1 intronic 27.206797 109.526793 27.206797 83.319996 55.2633965 1.742437573 -0.131723 58 55 SH18016 18016 YLR287C-A_12_713158_712537_INTRON_4_433 3' exon 32.118222 120.596981 32.118222 89.478759 60.7984905 1.783892797 0.028168 58 56 SH20249 20249 YDR381C-A spliced 26.718249 79.808228 53.2632385 1.726427569 -0.12275 58 57 SH17541 17541 YJL177W_10_90783_91654_INTRON_310_626 intron 38.536172 136.979503 38.536172 99.443331 68.9897515 1.838784581 -0.020133 58 58 SH5875 5875 snR35 3' 41.709944 93.810586 67.760265 1.830975096 0.165254 58 59 SH21491 21491 copy of SH2039 29.29405 78.807278 54.050664 1.732801034 0.063301 58 60 SH3853 3853 RNaseP RNaseP 231 243 26.204265 78.414243 52.309254 1.718578526 -0.142127 58 61 SH2994 2994 Ser2 5' flank 53.06353 116.622217 84.8428735 1.928615369 -0.062566 58 62 SH12797 12797 MT COX1 COX1ai1 30.26444 109.993674 30.26444 80.729234 55.496837 1.744268232 0.10058 58 63 SH4168 4168 SRP RNA 3' 27.617171 78.915172 53.2661715 1.726451483 -0.049135 58 64 SH16172 16172 YDR305C_4_1073479_1072737_INTRON_88_176 5' exon 28.927387 114.506366 28.927387 86.578979 57.753183 1.761575925 -0.060913 58 65 SH9820 9820 RUF5-1 5' 32.209595 87.806021 60.007808 1.778207763 0.061164 58 66 SH6565 6565 snR47 5' 36.123887 90.356435 63.240161 1.800992967 0.121903 58 67 SH13757 13757 MT COB intronic 25.445873 103.790811 25.445873 79.344938 52.3954055 1.719293206 -0.210008 58 68 SH3462 3462 Trp1 3' flank 36.515836 104.770527 70.6431815 1.84907025 -0.172078 58 69 SH9003 9003 snR17a / U3a U3a 301 315 31.481516 90.910885 61.1962005 1.786724459 -0.023195 58 70 SH12154 12154 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7656 7673 325.459597 406.09075 365.7751735 2.563214225 -0.08451 58 71 SH7078 7078 snR62 3' 25.983793 77.960493 51.972143 1.715770625 -0.15283 58 72 SH497 497 Asp2 tRNA 46 61 49.782347 107.324466 78.5534065 1.895165023 0.043894 58 73 SH2145 2145 Met1 3' flank 28.933714 97.004274 62.968994 1.799126755 -0.236508 58 74 SH18853 18853 YNR053C_14_723108_721117_INTRON_811_1341 exon/intron 31.659425 123.604496 31.659425 92.945071 62.302248 1.794503717 -0.049885 58 75 SH12893 12893 MT COX1 cox1ai1/intronic 25.471976 99.018021 25.471976 74.546045 50.0090105 1.699048261 -0.148167 58 76 SH20005 20005 YBR082C spliced 25.838312 90.822747 58.3305295 1.765895919 -0.315289 58 77 SH11075 11075 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2261 2278 153.192657 161.507826 157.3502415 2.196867414 0.503561 58 78 SH14575 14575 MT 21S rRNA intronic 27.290725 98.912524 27.290725 72.621799 49.956262 1.698589935 0.009747 58 79 SH19293 19293 YPL175W_16_218629_220087_INTRON_18_117 intron 27.443524 108.754836 27.443524 82.311312 54.877418 1.739393669 -0.103205 58 80 SH17035 17035 YGR183C_7_859471_859058_INTRON_4_216 intron 29.441968 117.021732 29.441968 88.579764 59.010866 1.770931988 -0.072656 58 81 SH21711 21711 copy of SH11291 28.911546 69.827752 49.369649 1.69346004 0.158502 58 82 SH20968 20968 YML026C spliced 28.485322 77.888191 53.1867565 1.725803506 0.022298 58 83 SH12217 12217 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.439297 134.795172 30.439297 105.355875 67.897586 1.831854334 -0.336316 58 84 SH3988 3988 RNase MRP 3' 28.048111 70.728904 49.3885075 1.693625902 0.087808 58 85 SH1735 1735 Leu7 5' flank 34.735775 87.364024 61.0498995 1.785684953 0.156801 58 86 SH21048 21048 YMR142C spliced 32.466317 90.949342 61.7078295 1.790340271 0.017378 58 87 SH2950 2950 Ser1 5' flank - tRNA1 1 27.823889 77.247962 52.5359255 1.720456387 -0.013705 58 88 SH13359 13359 MT COX1 intronic 29.607617 108.460759 29.607617 79.853142 54.7303795 1.73822846 0.070163 58 89 SH6457 6457 snR45 snR45 131 148 62.515863 126.848011 94.681937 1.976267134 -0.064906 58 90 SH21474 21474 copyu of SH1441 35.692759 94.621859 65.157309 1.81396314 0.017973 58 91 SH7024 7024 snR62 5' 27.018788 79.129694 53.074241 1.724883792 -0.093126 58 92 SH9505 9505 RUF3 5' 37.681018 138.308793 87.9949055 1.944457529 -0.710148 58 93 SH3192 3192 Ser5 81-82 + 3' flank 81 29.027188 69.185301 49.1062445 1.691136722 0.175059 58 94 SH5779 5779 snR35 snR35 81 100 29.109002 78.280859 53.6949305 1.729933285 0.058072 58 95 SH16145 16145 YDR092W_4_629869_630598_INTRON_31_298 intron 27.232643 103.628684 27.232643 77.396041 52.314342 1.718620767 -0.056092 58 96 SH4926 4926 snR9 snR9 36 52 29.916414 82.612012 56.264213 1.750232249 0.055705 58 97 SH10803 10803 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 901 916 890.663189 693.437149 792.050169 2.898752691 0.355619 58 98 SH3538 3538 Tyr2 5' flank 28.125851 78.433819 53.279835 1.726562871 -0.00862 58 99 SH20929 20929 YLR388W spliced 31.86367 86.88514 59.374405 1.773599271 0.063021 58 100 SH16760 16760 YGL087C_7_346902_346404_INTRON_12_96 intron 33.024268 114.336033 33.024268 82.311765 57.6680165 1.760935014 0.194554 58 101 SH2970 2970 Ser1 81-83 + 3' flank 81 24.918069 69.224108 47.0710885 1.672754241 -0.118934 58 102 SH21067 21067 YMR201C spliced 156.652872 396.789385 276.7211285 2.44204232 -0.969632 58 103 SH19097 19097 YOR312C_15_901173_900242_INTRON_2_427 intron 93.553238 315.241525 93.553238 222.688287 158.1207625 2.1989889 -0.627552 58 104 SH19943 19943 YBL040C spliced 30.451038 69.495698 49.973368 1.69873862 0.262179 59 2 SH5760 5760 snR35 5' - 3 -14 3 27.435026 74.268527 50.8517765 1.70630613 -0.001613 59 3 SH12410 12410 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.350454 99.256981 28.350454 71.906527 50.1284905 1.700084627 0.092611 59 4 SH14947 14947 MT tRNA Met 5' / tRNA 23.643976 98.550159 23.643976 75.906183 49.7750795 1.697011962 -0.308934 59 5 SH536 536 Cys1 5' flank 29.924496 83.9963 56.960398 1.755573015 0.031293 59 6 SH7802 7802 snoRNA cluster1 snR75 27.517757 108.158091 27.517757 81.640334 54.5790455 1.737025936 -0.08992 59 7 SH20270 20270 YDR424C spliced 29.76155 93.882564 61.822057 1.791143451 -0.148149 59 8 SH5135 5135 snR11 3' 26.876388 76.18677 51.531579 1.71207345 -0.065702 59 9 SH5814 5814 snR35 snR35 256 272 28.063617 66.554547 47.309082 1.674944521 0.147246 59 10 SH9081 9081 snR14 / U4 RNA U4 21 35 36.668823 99.202155 67.935489 1.832096706 -0.055992 59 11 SH2706 2706 Pro5 5' flank 36.822335 87.937715 62.380025 1.795045544 0.19337 59 12 SH17678 17678 YKL006W_11_431544_432358_INTRON_130_527 intron 28.402215 117.611269 28.402215 90.209054 59.3056345 1.773095957 -0.148973 59 13 SH12038 12038 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7076 7096 27.351272 63.421655 45.3864635 1.656926344 0.14418 59 14 SH9253 9253 snR6 / U6 RNA 3' 27.895262 80.946394 54.420828 1.735765145 -0.055701 59 15 SH6988 6988 snR60 snR60 21 37 29.281448 86.988721 58.1350845 1.764438308 -0.051935 59 16 SH10835 10835 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1061 1079 30.992455 74.367783 52.680119 1.721646747 0.227545 59 17 SH12764 12764 MT COX1 COX1ai1 26.991233 113.145213 26.991233 87.15398 57.0726065 1.756427707 -0.191754 59 18 SH17710 17710 YKL081W_11_282533_284097_INTRON_206_531 intron 32.21259 108.021099 32.21259 76.808509 54.5105495 1.73648056 0.267968 59 19 SH10900 10900 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1386 1403 111.754412 131.380732 121.567572 2.084817743 0.490125 59 20 SH19160 19160 YPL075W_16_412249_415357_INTRON_9_759 intron 29.803282 118.384788 29.803282 89.581506 59.692394 1.775918997 -0.073728 59 21 SH17917 17917 YLR061W_12_263195_263949_INTRON_13_401 intron 27.925803 100.96261 27.925803 74.036807 50.981305 1.707410948 0.035531 59 22 SH20960 20960 YML025C spliced 28.066165 74.35675 51.2114575 1.709367136 0.040823 59 23 SH399 399 Asn1 3' flank 32.859673 82.584921 57.722297 1.761343605 0.182742 59 24 SH21838 21838 copy of SH16603 71.056008 110.694093 90.8750505 1.958444665 0.320027 59 25 SH2814 2814 Pro6 3' flank 27.224509 66.770545 46.997527 1.672075006 0.085676 59 26 SH15231 15231 MT COX3 cox3 / 3' 28.641536 106.627374 28.641536 78.985838 53.813687 1.730892748 0.018592 59 27 SH5402 5402 snR31 snR31 76 88 32.264825 77.442909 54.853867 1.739207249 0.257739 59 28 SH21414 21414 Ser4 spliced 29.782674 80.787296 55.284985 1.742607196 0.069626 59 29 SH7601 7601 snR189 snR189 76 92 29.999826 90.566461 60.2831435 1.780195891 -0.081846 59 30 SH14995 14995 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.938489 101.183566 25.938489 76.245077 51.091783 1.708351059 -0.134841 59 31 SH9403 9403 RUF1 3' 30.660406 83.056089 56.8582475 1.75479347 0.081223 59 32 SH5939 5939 snR36 snR36 151 170 26.592534 64.931303 45.7619185 1.660504223 0.067689 59 33 SH10400 10400 RUF8 5' 31.814179 96.176028 63.9951035 1.806146746 -0.113434 59 34 SH12935 12935 MT COX1 COX1ai2 29.764059 111.706696 29.764059 82.942637 56.353348 1.750919723 0.042086 59 35 SH16619 16619 YFL039C_6_54695_53260_INTRON_11_318 intron 29.414474 99.148914 29.414474 70.73444 50.074457 1.699616249 0.179235 59 36 SH14114 14114 MT COB intronic 26.634406 92.980187 26.634406 67.345781 46.9900935 1.672006309 0.035243 59 37 SH16620 16620 YFL039C_6_54695_53260_INTRON_11_318 intron 33.143074 111.666403 33.143074 79.523329 56.3332015 1.750764434 0.252675 59 38 SH6175 6175 snR40 5' 28.593213 70.611341 49.602277 1.695501613 0.126472 59 39 SH2648 2648 Pro4 5' flank 28.563496 77.27976 52.921628 1.723633196 0.035314 59 40 SH17130 17130 YHR010W_8_126513_127484_INTRON_32_592 intron 54.504744 167.821769 54.504744 114.317025 84.4108845 1.926398451 0.001523 59 41 SH3642 3642 Val2 5' flank 24.420493 71.093154 47.7568235 1.679035432 -0.18371 59 42 SH3073 3073 Ser3 tRNA 61 73 29.127661 77.500942 53.3143015 1.726843724 0.069304 59 43 SH5608 5608 snR34 5' 31.631454 84.303596 57.967525 1.763184758 0.099892 59 44 SH19648 19648 SIR1 2.2 27.293708 79.228729 53.2612185 1.726411098 -0.075303 59 45 SH18436 18436 YMR142C_13_551206_550205_INTRON_5_406 intron 27.307353 111.896624 27.307353 85.589271 56.448312 1.75165096 -0.151676 59 46 SH19910 19910 YAL001C spliced 31.531598 94.426497 62.9790475 1.799196088 -0.08378 59 47 SH6691 6691 snR49 5' 28.620242 71.909123 50.2646825 1.701262944 0.110816 59 48 SH8365 8365 snoRNA cluster4 3' 28.068834 114.160839 28.068834 87.092005 57.5804195 1.760274825 -0.11728 59 49 SH13660 13660 MT ATP6 ATP6 27.68381 94.213551 27.68381 67.529741 47.6067755 1.677668767 0.107046 59 50 SH14404 14404 MT 21S rRNA 21S rRNA3 27.547576 92.199886 27.547576 65.65231 46.599943 1.668385385 0.124601 59 51 SH14212 14212 MT ATP9 5'/ATP9 29.915922 106.683161 29.915922 77.767239 53.8415805 1.7311178 0.116182 59 52 SH21121 21121 YNL112W spliced 32.745737 96.603345 64.674541 1.810733355 -0.097768 59 53 SH4274 4274 telomerase RNA telomerase 406 420 31.414352 69.686758 50.550555 1.703725928 0.318113 59 54 SH15119 15119 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 3' 27.582508 105.895758 27.582508 79.31325 53.447879 1.727930476 -0.056539 59 55 SH17113 17113 YHR001W-A_8_107819_108115_INTRON_7_69 3' exon 27.755008 107.484423 27.755008 80.729415 54.2422115 1.734337388 -0.062511 59 56 SH561 561 Cys1 3' flank 29.430245 79.021419 54.225832 1.734206224 0.069324 59 57 SH3890 3890 RNaseP 3' 28.257716 83.28999 55.773853 1.746430648 -0.059953 59 58 SH5870 5870 snR35 536-540 + 3' 536 29.584998 81.963713 55.7743555 1.74643456 0.042604 59 59 SH17600 17600 YJL205C-A_10_50443_50139_INTRON_33_175 5' exon 29.715291 105.494229 29.715291 76.778938 53.2471145 1.726296078 0.116309 59 60 SH8850 8850 LSR1 / U2 RNA U2 891 908 31.796093 88.758758 60.2774255 1.780154695 0.027175 59 61 SH6606 6606 snR47 3' 27.172135 81.41661 54.2943725 1.734754818 -0.110988 59 62 SH6066 6066 snR37 snR37 246 263 27.889999 74.250918 51.0704585 1.708169757 0.030289 59 63 SH12640 12640 MT_15S MT_15S 144.348537 349.960119 144.348537 206.611582 175.4800595 2.244227773 0.015892 59 64 SH9834 9834 RUF5-1 5' 26.7514 80.12699 53.439195 1.727859907 -0.124405 59 65 SH20948 20948 YLR448W spliced 50.225606 104.725623 77.4756145 1.88916503 0.100647 59 66 SH4941 4941 snR9 snR9 111 129 33.690594 74.158412 53.924503 1.731786151 0.382656 59 67 SH15490 15490 YBL092W_2_45639_46364_INTRON_1_333 intron 29.60782 117.69958 29.60782 89.09176 59.34979 1.773419187 -0.074054 59 68 SH3643 3643 Val2 5' flank 27.74472 70.727986 49.236353 1.692285877 0.066876 59 69 SH9576 9576 RUF3 RUF3 266 283 25.518662 67.323159 46.4209105 1.666713654 -0.04612 59 70 SH3077 3077 Ser3 tRNA 81 96 333.873406 467.508685 400.6910455 2.602809637 -0.278883 59 71 SH18104 18104 YLR367W_12_855877_857316_INTRON_698_1180 intron 24.813861 98.156 24.813861 74.342139 49.578 1.695289003 -0.19595 59 72 SH9880 9880 RUF5-1 RUF5-1 206 220 35.087328 87.16199 61.124659 1.786216449 0.170109 59 73 SH3070 3070 Ser3 tRNA 46 62 26.611699 72.577186 49.5944425 1.695433013 -0.038186 59 74 SH5799 5799 snR35 snR35 181 203 31.198529 90.994273 61.096401 1.786015628 -0.036698 59 75 SH15745 15745 YCR028C-A_3_173432_172942_INTRON_243_325 3' exon 27.392426 97.587374 27.392426 71.194948 49.293687 1.692791303 0.035951 59 76 SH20305 20305 YER003C spliced 38.180035 92.460664 65.3203495 1.8150485 0.122397 59 77 SH14381 14381 MT ORF9 and ORF10 (hypothetical) 3' 26.49038 92.292719 26.49038 66.802339 46.6463595 1.668817755 0.032575 59 78 SH13959 13959 MT COB Cytbi3 26.913919 100.282055 26.913919 74.368136 50.6410275 1.704502509 -0.03983 59 79 SH18184 18184 YLR448W_12_1028848_1029762_INTRON_16_399 3' exon 38.305262 123.938399 38.305262 86.633137 62.4691995 1.795665941 0.257468 59 80 SH18888 18888 YOL047C_15_242745_241612_INTRON_244_306 3' exon 58.690929 172.404531 58.690929 114.713602 86.7022655 1.938030446 0.065032 59 81 SH11859 11859 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6181 6197 25339.99601 14805.96268 20072.97934 4.302611838 -0.101818 59 82 SH8477 8477 snoRNA cluster 5 3' 29.098349 101.833925 29.098349 73.735576 51.4169625 1.711106417 0.117272 59 83 SH5009 5009 snR10 snR10 76 93 36.86425 95.34359 66.10392 1.820227214 0.030146 59 84 SH10541 10541 RUF8 RUF8 631 647 31.775339 81.574048 56.6746935 1.75338918 0.156882 59 85 SH14438 14438 MT 21S rRNA 21S rRNA3 112.031472 265.591158 112.031472 154.559686 133.295579 2.124815745 0.209197 59 86 SH13228 13228 MT COX1 COX1-ai4 28.10496 121.503769 28.10496 94.398809 61.2518845 1.787119455 -0.233286 59 87 SH4857 4857 snR8 snR8 66 82 115.720379 205.365154 160.5427665 2.205590743 -0.237537 59 88 SH11532 11532 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4546 4561 66.513347 108.246667 87.380007 1.941412075 0.296746 59 89 SH10325 10325 RUF7 RUF7 236 250 36.727187 92.242657 64.484922 1.809458179 0.094105 59 90 SH15355 15355 YBL026W_2_170585_171000_INTRON_55_182 intron 29.931675 115.196561 29.931675 86.264886 58.0982805 1.764163279 -0.009613 59 91 SH4963 4963 snR9 3' 25.509533 59.646892 42.5782125 1.629187425 0.076238 59 92 SH8211 8211 snoRNA cluster 3; snR51 27.266274 98.106027 27.266274 71.839753 49.5530135 1.695070071 0.01841 59 93 SH15398 15398 YBL050W_2_125087_126081_INTRON_31_146 intron 30.911535 112.520388 30.911535 82.608853 56.760194 1.754043871 0.100494 59 94 SH21552 21552 copy of SH4565 30.587091 112.524974 71.5560325 1.854646253 -0.465857 59 95 SH16571 16571 YER133W_5_432491_433954_INTRON_178_702 3' exon 35.274797 128.539629 35.274797 94.264832 64.7698145 1.811372653 0.015582 59 96 SH3025 3025 Ser2 3' flank 27.366607 91.026371 59.196489 1.772295949 -0.21264 59 97 SH12 12 Ala1 5' flank 30.193335 91.284174 60.7387545 1.783465882 -0.085452 59 98 SH21345 21345 YPR098C spliced 61.442172 111.544275 86.4932235 1.936982083 0.162757 59 99 SH16377 16377 YER003C_5_159117_157735_INTRON_32_124 3' exon 149.375963 322.244206 149.375963 173.868243 161.622103 2.208500753 0.348594 59 100 SH8258 8258 snoRNA cluster4 5' 26.730208 89.296148 26.730208 63.56594 45.148074 1.654639228 0.098938 59 101 SH2026 2026 Lys3 tRNA 76 88 29.382838 89.335595 59.3592165 1.77348816 -0.088491 59 102 SH7110 7110 snR63 snR63 56 75 199.379614 411.062027 305.2208205 2.484614155 -0.725419 59 103 SH13157 13157 MT COX1 intronic 112.596685 373.711899 112.596685 262.115214 187.3559495 2.272667489 -0.68325 59 104 SH60 60 Ala2 5' flank 70.929401 157.032445 113.980923 2.05683217 -0.327591 60 2 SH12636 12636 MT_15S MT_15S 26.918044 109.023964 26.918044 83.10592 55.011982 1.740457292 -0.149252 60 3 SH6204 6204 snR40 81-97 + 3' 81 31.475172 85.354257 58.4147145 1.766522258 0.074102 60 4 SH2290 2290 Phe2 tRNA-intron/exon 46 62 31.097912 76.166829 53.6323705 1.729426993 0.210013 60 5 SH1039 1039 Gly3 5' flank 28.533983 94.454054 61.4940185 1.788832874 -0.213914 60 6 SH7050 7050 snR62 snR62 41 60 28.457817 84.374562 56.4161895 1.751403749 -0.059611 60 7 SH3164 3164 Ser5 5' flank 28.557857 76.785243 52.67155 1.721576099 0.041369 60 8 SH9524 9524 RUF3 RUF3 6 23 30.836184 117.300066 74.068125 1.869631351 -0.544172 60 9 SH14842 14842 MT tRNA Asp tRNA Asp 28.224827 125.255323 28.224827 98.030496 63.1276615 1.800219702 -0.285988 60 10 SH8098 8098 snoRNA cluster 3; 5' 29.929316 139.929816 29.929316 111.0005 70.464908 1.847972889 -0.45674 60 11 SH21252 21252 YPL075W spliced 25.624463 91.145865 58.385164 1.766302504 -0.334503 60 12 SH14966 14966 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' / cox2 27.169654 111.216944 27.169654 85.04729 56.108472 1.749028442 -0.154841 60 13 SH4335 4335 telomerase RNA telomerase 711 732 28.398291 118.997408 73.6978495 1.867454815 -0.642888 60 14 SH4984 4984 snR10 5' 27.903324 99.455064 63.679194 1.803997558 -0.32364 60 15 SH10659 10659 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 181 196 31.714697 75.451553 53.583125 1.729028038 0.256464 60 16 SH19832 19832 Negative Control 27.385419 69.567526 48.4764725 1.68553101 0.057648 60 17 SH13278 13278 MT COX1 Exon 5a 27.881681 96.925232 27.881681 70.043551 48.962616 1.689864613 0.08569 60 18 SH17697 17697 YKL006W_11_431544_432358_INTRON_130_527 intron/exon 28.578781 98.098579 28.578781 70.519798 49.5492895 1.695037431 0.126745 60 19 SH1025 1025 Gly2 3' flank 29.286896 66.543764 47.91533 1.680474484 0.229568 60 20 SH5642 5642 snR34 snR34 131 147 55.493738 120.006693 87.7502155 1.943248192 -0.075473 60 21 SH5219 5219 snR30 5' 30.171142 70.278842 50.224992 1.700919876 0.233561 60 22 SH19112 19112 YOR312C_15_901173_900242_INTRON_2_427 3' exon 30.190767 114.029419 30.190767 84.838652 57.5147095 1.759778931 0.027713 60 23 SH11896 11896 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6366 6381 85.773219 135.538748 110.6559835 2.043974902 0.14299 60 24 SH20386 20386 YFL034C-B spliced 27.247713 81.142085 54.194899 1.733958411 -0.102373 60 25 SH18801 18801 YNL301C_14_64561_63569_INTRON_113_544 intron 26.547445 95.137565 26.547445 69.59012 48.0687825 1.681863122 -0.002513 60 26 SH12571 12571 MT_15S MT_15S 25.73622 96.622233 25.73622 71.886013 48.8111165 1.688518742 -0.093426 60 27 SH23 23 Ala1 tRNA 11 23 42.750355 103.48786 73.1191075 1.864030882 -0.015158 60 28 SH6850 6850 snR52 3' 29.515281 87.433252 58.4742665 1.766964783 -0.049174 60 29 SH3692 3692 Val3 5' flank 27.806602 76.978297 52.3924495 1.719268703 -0.011375 60 30 SH14616 14616 MT 21S rRNA Sce1 endonuc 25.937116 90.27014 25.937116 65.333024 45.63507 1.659298721 0.014776 60 31 SH21509 21509 copy of SH2854 43.953026 99.171333 71.5621795 1.854683559 0.095038 60 32 SH3854 3854 RNaseP RNaseP 236 250 46.582538 101.466524 74.024531 1.869375664 0.098431 60 33 SH16319 16319 YDR471W_4_1401759_1402553_INTRON_32_415 intron 60.126802 193.185809 60.126802 134.059007 97.0929045 1.987187493 -0.208231 60 34 SH5673 5673 snR34 snR34 286 303 27.226869 73.709355 50.468112 1.703017058 -0.009028 60 35 SH1732 1732 Leu7 5' flank 29.562746 87.275769 58.4192575 1.766556033 -0.044235 60 36 SH7752 7752 snoRNA cluster1 snR76 40.941188 147.873375 40.941188 107.932187 74.4366875 1.871787038 -0.137507 60 37 SH6693 6693 snR49 5' - 8 -9 8 26.85675 72.810947 49.8338485 1.697524428 -0.02362 60 38 SH18391 18391 YMR116C_13_500687_499455_INTRON_538_810 intron/exon 31.251514 122.827745 31.251514 92.576231 61.9138725 1.791787968 -0.061091 60 39 SH21105 21105 YNL050C spliced 26.402946 89.622852 58.012899 1.763524568 -0.261242 60 40 SH17565 17565 YJL189W_10_75932_76473_INTRON_7_392 intron 49.287055 154.092276 49.287055 105.805221 77.546138 1.889560174 0.063367 60 41 SH14790 14790 "MT tRNAs (Lys, Arg1, Gly)" 5' 28.73747 120.304078 28.73747 92.566608 60.652039 1.782845406 -0.173177 60 42 SH20655 20655 YIL018W spliced 33.435186 82.118984 57.777085 1.761755627 0.214733 60 43 SH12625 12625 MT_15S MT_15S 35.774893 133.271848 35.774893 98.496955 67.135924 1.826954971 -0.061583 60 44 SH2373 2373 Phe4 5' flank 28.99276 78.690434 53.841597 1.731117933 0.045308 60 45 SH11357 11357 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3671 3684 28414.8188 14303.9425 21359.38065 4.329588655 0.102231 60 46 SH1272 1272 Ile2 tRNA-intron 56 72 30.73811 86.742566 58.740338 1.768936441 0.017428 60 47 SH6122 6122 snR39B 5' 27.903238 79.585123 53.7441805 1.730331445 -0.038182 60 48 SH1891 1891 Lys1 5' flank 43.118806 97.714047 70.4164265 1.847673982 0.10864 60 49 SH10487 10487 RUF8 RUF8 361 380 29.759691 93.676642 61.7181665 1.790413016 -0.144836 60 50 SH19377 19377 YPR043W_16_654161_654842_INTRON_3_405 intron 30.083647 124.48176 30.083647 95.398113 62.74088 1.797550606 -0.158516 60 51 SH16771 16771 YGL103W_7_310965_311925_INTRON_50_560 intron 30.479664 102.541064 30.479664 73.0614 51.770532 1.714082628 0.213854 60 52 SH5639 5639 snR34 snR34 116 132 33.30623 93.358048 63.332139 1.801624156 -0.013871 60 53 SH10593 10593 RUF8 RUF8 891 905 29.40511 83.73572 56.570415 1.752589365 0.009697 60 54 SH622 622 Gln1 3' flank 74.932673 138.430727 106.6817 2.028089928 -0.040024 60 55 SH7611 7611 snR189 snR189 126 144 27.679903 71.946163 49.813033 1.697342986 0.045985 60 56 SH4584 4584 U3b (snR17b) 3' 27.336778 68.812194 48.074486 1.68191465 0.0647 60 57 SH2506 2506 Pro1 tRNA 21 36 29.031049 78.614809 53.822929 1.730967328 0.048757 60 58 SH19348 19348 YPL249C-A_16_76239_75699_INTRON_17_254 intron 67.319928 185.123984 67.319928 118.804056 93.061992 1.968772344 0.132589 60 59 SH15364 15364 YBL027W_2_168385_169338_INTRON_3_386 exon/intron 28.181642 113.354493 28.181642 86.172851 57.1772465 1.757223237 -0.0991 60 60 SH12263 12263 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 40.079973 133.428912 40.079973 94.348939 67.214456 1.827462688 0.120654 60 61 SH17169 17169 YHR016C_8_138446_136872_INTRON_48_215 3' exon 31.767141 112.340206 31.767141 81.573065 56.670103 1.753354002 0.156556 60 62 SH20370 20370 YER133W spliced 30.317991 77.835991 54.076991 1.733012518 0.140452 60 63 SH6297 6297 snR42 snR42 266 282 30.588723 82.397344 56.4930335 1.751994896 0.090409 60 64 SH5038 5038 snR10 snR10 221 237 27.545217 82.64013 55.0926735 1.741093848 -0.100228 60 65 SH5546 5546 snR33 snR33 16 32 26.443433 77.888296 52.1658645 1.717386409 -0.118172 60 66 SH18557 18557 YMR292W_13_854795_855293_INTRON_23_104 5' exon 30.011776 130.63609 30.011776 101.624314 65.818045 1.818344978 -0.275178 60 67 SH10861 10861 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1191 1208 370.609489 374.238516 372.4240025 2.571037663 0.212601 60 68 SH12583 12583 MT_15S MT_15S 27.750709 88.966414 27.750709 62.215705 44.983207 1.653050414 0.190789 60 69 SH18152 18152 YLR406C_12_931752_931062_INTRON_58_406 3' exon 32.361393 116.421869 32.361393 85.060476 58.7109345 1.768718993 0.1166 60 70 SH20602 20602 YHR041C spliced 27.949535 83.281841 55.615688 1.745197314 -0.080517 60 71 SH13651 13651 MT ATP6 ATP6 29.880779 118.998982 29.880779 90.118203 59.999491 1.778147566 -0.079492 60 72 SH1157 1157 His1 tRNA 6 23 25.032072 63.800456 44.416264 1.647542026 -0.027489 60 73 SH11285 11285 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3311 3324 33.07588 89.536436 61.306158 1.7875041 0.065071 60 74 SH669 669 Gln2 3' flank 41.706202 101.830893 71.7685475 1.855934157 -0.003613 60 75 SH3924 3924 RNase MRP RNaseMRP 36 57 24.747402 74.444366 49.595884 1.695445636 -0.202433 60 76 SH10557 10557 RUF8 RUF8 711 725 103.713782 140.507091 122.1104365 2.086752784 0.287814 60 77 SH22 22 Ala1 tRNA 6 18 77.877324 145.589841 111.7335825 2.048183724 -0.090232 60 78 SH7339 7339 snR68 5' 28.164579 89.305829 58.735204 1.768898481 -0.144652 60 79 SH1932 1932 Lys1 3' flank 25.633949 67.919392 46.7766705 1.670029306 -0.046628 60 80 SH363 363 Arg5 3' flank 26.932767 77.969294 52.4510305 1.719754025 -0.084343 60 81 SH12395 12395 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 38.787154 136.744338 38.787154 98.957184 68.872169 1.83804376 -0.004684 60 82 SH2786 2786 Pro6 tRNA 21 36 32.109914 79.553873 55.8318935 1.746882357 0.209695 60 83 SH11084 11084 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2306 2322 23399.17485 13660.43628 18529.80557 4.267870862 -0.078658 60 84 SH20232 20232 YDR139C spliced 31.825704 99.65829 65.741997 1.817842892 -0.185349 60 85 SH1839 1839 Leu9 5' flank 28.095376 73.957709 51.0265425 1.707796142 0.048171 60 86 SH7720 7720 snoRNA cluster1 snR77 33.088422 105.566226 33.088422 73.477804 53.283113 1.72658959 0.362899 60 87 SH6163 6163 snR39B 3' 28.645509 72.490361 50.567935 1.703875219 0.104772 60 88 SH15196 15196 MT COX3 cox3 28.533986 97.499885 28.533986 69.965899 49.2499425 1.692405728 0.131291 60 89 SH5470 5470 snR32 snR32 11 28 26.106279 66.839948 46.4731135 1.667201769 0.003907 60 90 SH17038 17038 YGR183C_7_859471_859058_INTRON_4_216 intron 28.339904 102.531433 28.339904 75.191529 51.7657165 1.71404223 0.047933 60 91 SH418 418 Asp1 5' flank 28.144866 71.701139 49.9230025 1.698300697 0.081339 60 92 SH17493 17493 YJL041W_10_365480_368069_INTRON_2_119 exon/intron 27.341285 94.45825 27.341285 68.116965 47.729125 1.678783473 0.074762 60 93 SH12335 12335 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.331047 131.872504 28.331047 104.541457 66.436252 1.822405124 -0.381907 60 94 SH7449 7449 snR69 3' 38.31134 84.673467 61.4924035 1.788821468 0.304065 60 95 SH10876 10876 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1266 1279 219.882456 229.853147 224.8678015 2.351927274 0.349553 60 96 SH3035 3035 Ser2 3' flank 33.519703 93.016162 63.2679325 1.801183643 -0.000961 60 97 SH6295 6295 snR42 snR42 256 275 27.499991 81.917822 54.7089065 1.738058034 -0.094534 60 98 SH14486 14486 MT 21S rRNA 21S rRNA3 29.700596 99.964781 29.700596 71.264185 50.4823905 1.703139912 0.190004 60 99 SH1966 1966 Lys2 tRNA 31 50 83.645262 145.289752 114.467507 2.058682224 -0.009607 60 100 SH17992 17992 YLR287C-A_12_713158_712537_INTRON_4_433 5' exon 32.687348 127.317633 32.687348 95.630285 64.1588165 1.807256344 -0.078735 60 101 SH14427 14427 MT 21S rRNA 21S rRNA3 23.114268 95.414324 23.114268 73.300056 48.207162 1.683111565 -0.317529 60 102 SH12714 12714 MT ORF 8 (hypothetical) ORF8 / 3' 21.525353 85.9588 21.525353 65.433447 43.4794 1.638283542 -0.332713 60 103 SH16471 16471 YER102W_5_362729_363698_INTRON_1_360 intron 120.271687 413.652153 120.271687 294.380466 207.3260765 2.316653929 -0.799101 60 104 SH2757 2757 Pro5 3' flank 118.599048 276.826416 197.712732 2.296034637 -0.712836 61 2 SH20743 20743 YJL205C-A spliced 31.793025 84.216864 58.0049445 1.763465016 0.108304 61 3 SH13928 13928 MT COB Cytbi3 29.375479 116.605805 29.375479 88.230326 58.8029025 1.769398763 -0.069568 61 4 SH530 530 Cys1 5' flank 26.903038 77.434351 52.1686945 1.717409969 -0.079531 61 5 SH20326 20326 YER056C-A spliced 42.820885 97.584902 70.2028935 1.846355012 0.105521 61 6 SH18151 18151 YLR406C_12_931752_931062_INTRON_58_406 3' exon 28.997489 106.719095 28.997489 78.721606 53.8595475 1.7312627 0.045219 61 7 SH12989 12989 MT COX1 COX1ai2 29.086017 111.323866 29.086017 83.237849 56.161933 1.749442047 -0.00489 61 8 SH16560 16560 YER133W_5_432491_433954_INTRON_178_702 intron 28.823384 103.009344 28.823384 75.18596 52.004672 1.716042362 0.07988 61 9 SH21535 21535 copy of SH3941 25.9488 67.617968 46.783384 1.670091633 -0.01885 61 10 SH21812 21812 copy of SH15492 34.125153 96.655238 65.3901955 1.815512636 -0.063591 61 11 SH5852 5852 snR35 snR35 446 462 36.303583 84.123075 60.213329 1.779692639 0.271298 61 12 SH4875 4875 snR8 snR8 156 168 31.198312 89.247071 60.2226915 1.779760161 -0.006715 61 13 SH19555 19555 CBP1 2.2 29.080331 80.353955 54.717143 1.738123413 0.030045 61 14 SH14128 14128 MT COB exon5/intron 32.004897 128.880592 32.004897 97.875695 64.940296 1.812514264 -0.143898 61 15 SH9266 9266 RUF1 5' 38.407594 109.630575 74.0190845 1.869343709 -0.223927 61 16 SH15604 15604 YBR119W_2_479296_480281_INTRON_9_97 exon/intron 29.993529 111.736291 29.993529 82.742762 56.3681455 1.751033747 0.057638 61 17 SH1378 1378 Leu1 5' flank 28.610273 90.144303 59.377288 1.773620358 -0.138094 61 18 SH12148 12148 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7626 7639 174.351493 183.539368 178.9454305 2.252720613 0.442155 61 19 SH6575 6575 snR47 5' 29.569431 91.158442 60.3639365 1.780777554 -0.111266 61 20 SH6846 6846 snR52 3' 31.912378 95.333064 63.622721 1.803612239 -0.092923 61 21 SH15809 15809 YDL061C_4_341182_340627_INTRON_1_408 intron 27.091561 91.619479 27.091561 65.527918 46.3097395 1.665672338 0.094275 61 22 SH21173 21173 YNL312W spliced 76.494491 133.57057 105.0325305 2.021323829 0.046916 61 23 SH17751 17751 YKL157W_11_154993_158183_INTRON_282_664 intron 28.982936 101.762408 28.982936 73.779472 51.381204 1.710804277 0.109188 61 24 SH1038 1038 Gly3 5' flank 26.07018 78.369307 52.2197435 1.717834734 -0.151457 61 25 SH18291 18291 YML073C_13_124172_123227_INTRON_16_430 5' exon 31.617027 122.236821 31.617027 91.619794 61.6184105 1.789710491 -0.029462 61 26 SH4512 4512 U3b (snR17b) U3b 116 133 26.636371 79.881436 53.2589035 1.726392221 -0.129451 61 27 SH523 523 Cys1 5' flank 26.62101 73.130689 49.8758495 1.697890306 -0.044803 61 28 SH6188 6188 snR40 snR40 1 19 229.740507 353.943347 291.841927 2.465147684 -0.303668 61 29 SH15612 15612 YBR181C_2_592732_591670_INTRON_7_358 5' exon 41.4505 143.182689 41.4505 102.732189 72.0913445 1.857883125 -0.026758 61 30 SH15880 15880 YDL082W_4_308423_309387_INTRON_5_369 intron 28.521146 122.975848 28.521146 95.454702 61.987924 1.792307092 -0.230819 61 31 SH19579 19579 AEP2/ATP13 0.6 26.487848 72.193083 49.3404655 1.693203243 -0.042078 61 32 SH9794 9794 RUF4 RUF4 746 763 26.532088 79.995506 53.263797 1.726432123 -0.138271 61 33 SH12781 12781 MT COX1 COX1ai1 31.521831 117.390644 31.521831 86.868813 59.195322 1.772287387 0.048876 61 34 SH14465 14465 MT 21S rRNA 21S rRNA3 118.048884 292.93233 118.048884 175.883446 146.966165 2.167217362 0.049243 61 35 SH6124 6124 snR39B 5' 29.890297 95.618538 62.7544175 1.797644303 -0.170716 61 36 SH5458 5458 snR32 5' 27.445881 71.372216 49.4090485 1.69380649 0.037319 61 37 SH6301 6301 snR42 snR42 286 303 27.400741 71.847483 49.624112 1.695692748 0.027781 61 38 SH13351 13351 MT COX1 intronic 29.502901 100.939044 29.502901 72.436143 50.969522 1.707310561 0.161089 61 39 SH8782 8782 LSR1 / U2 RNA U2 551 568 33.693176 92.06331 62.878243 1.798500398 0.024361 61 40 SH612 612 Gln1 3' flank 28.916888 73.847065 51.3819765 1.710810806 0.103973 61 41 SH5764 5764 snR35 snR35 6 23 26.720382 74.974976 50.847679 1.706271134 -0.061527 61 42 SH15260 15260 MT 9S rRNA 5' / 9S 26.605668 94.08145 26.605668 68.475782 47.540725 1.6770658 0.017197 61 43 SH15815 15815 YDL061C_4_341182_340627_INTRON_1_408 intron/exon 26.326335 109.423561 26.326335 84.097226 55.2117805 1.742031753 -0.203003 61 44 SH21430 21430 Tyr1_2 spliced 30.617362 87.620507 59.1189345 1.771726598 -0.003419 61 45 SH11618 11618 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4976 4991 31216.51691 16202.09114 23709.30402 4.374918806 0.028273 61 46 SH19061 19061 YOR234C_15_779404_778554_INTRON_20_546 3' exon 29.984629 107.118049 29.984629 78.13342 54.0590245 1.732868205 0.115801 61 47 SH4934 4934 snR9 snR9 76 92 1689.028308 2458.476061 2073.752185 3.316756857 -0.791036 61 48 SH20513 20513 YGR029W spliced 29.736215 88.451368 59.0937915 1.771541856 -0.057102 61 49 SH379 379 Asn1 5' flank 33.440011 89.233655 61.336833 1.787721348 0.081308 61 50 SH12073 12073 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7251 7268 30.636806 93.250514 61.94366 1.791996862 -0.098906 61 51 SH14322 14322 MT VAR1 includes 5’ processing site VAR1 26.559529 102.951916 26.559529 77.392387 51.975958 1.715802503 -0.103607 61 52 SH2852 2852 Pro7 tRNA-intron/exon 66 78 94.175713 166.204436 130.1900745 2.114577876 -0.115596 61 53 SH1925 1925 Lys1 3' flank 29.537454 93.098196 61.317825 1.787586742 -0.145287 61 54 SH2636 2636 Pro3 3' flank 27.303512 80.052447 53.6779795 1.72979616 -0.084982 61 55 SH7596 7596 snR189 snR189 51 67 31.881844 93.932641 62.9072425 1.798700649 -0.06369 61 56 SH6198 6198 snR40 snR40 51 65 34.121553 96.838973 65.480263 1.816110415 -0.067537 61 57 SH9535 9535 RUF3 RUF3 61 80 27.030891 67.82642 47.4286555 1.676040814 0.056875 61 58 SH4615 4615 snR3 5' - 10 10 31.396272 93.359401 62.3778365 1.795030308 -0.067937 61 59 SH10972 10972 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1746 1763 5759.572594 4012.357683 4885.965139 3.688950364 0.032204 61 60 SH18799 18799 YNL301C_14_64561_63569_INTRON_113_544 intron 26.674264 98.932535 26.674264 73.258271 49.9662675 1.698676909 -0.042627 61 61 SH149 149 Arg1 3' flank 29.535336 89.756447 59.6458915 1.775580534 -0.088833 61 62 SH18920 18920 YOL121C_15_92849_92025_INTRON_21_410 intron 27.978896 105.430802 27.978896 78.451906 53.215401 1.726037339 -0.018721 61 63 SH782 782 Glu1 5' flank 28.478969 82.187919 55.333444 1.742987702 -0.031921 61 64 SH15788 15788 YDL029W_4_399336_400634_INTRON_23_145 intron 28.247166 104.647004 28.247166 77.399838 52.823502 1.72282719 0.012776 61 65 SH15223 15223 MT COX3 cox3 27.259122 95.66014 27.259122 69.401018 48.33007 1.684217424 0.051045 61 66 SH20319 20319 YER044C-A spliced 26.113212 71.898504 49.005858 1.690247997 -0.065587 61 67 SH19645 19645 SIR1 2.2 32.035244 84.658298 58.346771 1.766016827 0.110374 61 68 SH9276 9276 RUF1 5' 34.210076 97.766627 65.9883515 1.819467279 -0.084683 61 69 SH6666 6666 snR48 3' 30.051221 82.305745 56.178483 1.749570008 0.067895 61 70 SH10697 10697 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 371 389 35.792593 101.378848 68.5857205 1.836233705 -0.12066 61 71 SH15659 15659 YBR189W_2_604466_605466_INTRON_8_420 intron 27.833342 111.082623 27.833342 84.249281 56.0413115 1.74850829 -0.09993 61 72 SH4162 4162 SRP RNA 3' 27.343505 78.965234 53.1543695 1.725538971 -0.068533 61 73 SH18277 18277 YML056C_13_164176_162194_INTRON_461_868 intron 33.341725 120.879508 33.341725 88.537783 60.939754 1.784900697 0.094561 61 74 SH7320 7320 snR66 3' 24.77316 65.776322 45.274741 1.655855975 -0.077917 61 75 SH13983 13983 MT COB intronic 30.917817 117.132273 30.917817 87.214456 59.0661365 1.771338565 0.016837 61 76 SH6107 6107 snR37 3' 37.029861 97.02803 67.0289455 1.826262387 -0.002223 61 77 SH19766 19766 Negative Control 28.748203 87.501651 58.124927 1.76436242 -0.085628 61 78 SH20300 20300 YEL012W spliced 27.099812 88.159346 57.629579 1.760645447 -0.195673 61 79 SH9076 9076 snR14 / U4 RNA 5' - 12 -4 12 37.884643 93.151412 65.5180275 1.816360814 0.100654 61 80 SH5995 5995 snR36 3' 28.323427 82.901699 55.612563 1.745172911 -0.050898 61 81 SH10254 10254 RUF6 3' 25.488788 66.070861 45.7798245 1.660674123 -0.029228 61 82 SH7140 7140 snR63 snR63 206 222 33.742424 85.856885 59.7996545 1.776698675 0.158116 61 83 SH14239 14239 MT tRNA Ser 5' 26.542571 96.144899 26.542571 70.602328 48.5724495 1.686390005 -0.016723 61 84 SH14343 14343 MT VAR1 includes 5’ processing site VAR1/3' 25.551758 93.433137 25.551758 68.881379 47.2165685 1.674094421 -0.066308 61 85 SH4193 4193 telomerase RNA telomerase 1 19 59.154851 127.854187 93.504519 1.9708326 -0.134726 61 86 SH9180 9180 snR7 U5 RNA U5 171 188 28.519573 66.84547 47.6825215 1.678359213 0.174098 61 87 SH4881 4881 snR8 186-190 + 3' 186 28.539405 69.983609 49.261507 1.692507694 0.131414 61 88 SH12765 12765 MT COX1 COX1ai1 28.498727 119.706706 28.498727 92.207979 60.353353 1.780701403 -0.178338 61 89 SH18058 18058 YLR333C_12_796335_795573_INTRON_1_423 intron 33.038835 122.38052 33.038835 90.341685 61.69026 1.790216601 0.045932 61 90 SH1470 1470 Leu2 3' flank 33.067258 80.34309 56.705174 1.753622687 0.233744 61 91 SH15933 15933 YDL115C_4_255042_253994_INTRON_1_88 5' exon 68.826088 192.124877 68.826088 124.298789 96.5624385 1.984808225 0.069543 61 92 SH2557 2557 Pro2 tRNA-exon/intron 21 36 33.550433 76.148897 54.849665 1.739173979 0.336101 61 93 SH9394 9394 RUF1 546-550 + 3' 546 330.659993 445.434534 388.0472635 2.588884625 -0.213304 61 94 SH13393 13393 MT COX1 intronic 130.857486 311.57077 130.857486 181.713284 156.285385 2.193918367 0.116198 61 95 SH3639 3639 Val2 5' flank 25.723683 72.494622 49.1091525 1.691162439 -0.102454 61 96 SH2830 2830 Pro7 5' flank 26.463601 72.944549 49.704075 1.696391996 -0.053778 61 97 SH7240 7240 snR65 5' 26.741813 70.159362 48.4505875 1.685299048 0.003719 61 98 SH14133 14133 MT COB intronic 24.506222 88.637183 24.506222 65.130961 44.8185915 1.651458204 -0.088148 61 99 SH16730 16730 YGL076C_7_365994_364333_INTRON_565_1032 5' exon 170.956608 364.222614 170.956608 194.266006 182.611307 2.261527665 0.322873 61 100 SH9647 9647 RUF4 RUF4 11 23 32.106251 85.329872 58.7180615 1.768771709 0.101114 61 101 SH11215 11215 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2961 2977 45.545662 99.058988 72.302325 1.859152263 0.127844 61 102 SH15415 15415 YBL059W_2_110555_111205_INTRON_287_355 5' exon 25.135713 94.780144 25.135713 70.644431 47.890072 1.68024549 -0.122175 61 103 SH8896 8896 LSR1 / U2 RNA U2 1121 1138 230.663641 529.190433 379.927037 2.579700201 -0.949674 61 104 SH20125 20125 YDL079C spliced 133.420718 308.632997 221.0268575 2.344445049 -0.75197 62 2 SH16017 16017 YDL189W_4_122079_123590_INTRON_1_99 5' exon 34.050409 123.422985 34.050409 90.372576 62.2114925 1.793870621 0.071015 62 3 SH13068 13068 MT COX1 intronic / exon3 29.326384 108.783765 29.326384 80.457381 54.8918825 1.739508125 0.044632 62 4 SH12005 12005 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6911 6934 27.00569 73.060112 50.032901 1.699255685 -0.016247 62 5 SH14040 14040 MT COB Cytbi4 29.210522 117.684366 29.210522 89.473844 59.342183 1.773363519 -0.098755 62 6 SH12273 12273 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.25684 111.855587 29.25684 83.598747 56.4277935 1.751493068 0.001812 62 7 SH6104 6104 snR37 3' 29.252344 78.882872 54.067608 1.732937156 0.059657 62 8 SH4109 4109 SRP RNA SRP RNA 436 448 8423.540887 4308.387145 6365.964016 3.803864179 0.414392 62 9 SH10376 10376 RUF7 486-500 + 3' 491 34.850209 90.454035 62.652122 1.796935785 0.08903 62 10 SH18676 18676 YNL112W_14_413636_416278_INTRON_1274_2275 intron 31.950233 110.296472 31.950233 79.346239 55.648236 1.745451402 0.207065 62 11 SH7270 7270 snR65 3' 26.387932 62.389731 44.3888315 1.647273713 0.09383 62 12 SH17188 17188 YHR021C_8_148660_147862_INTRON_4_553 intron 29.925514 113.476425 29.925514 84.550911 57.2382125 1.757686063 0.021158 62 13 SH11420 11420 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3986 4004 8717.969255 3559.162435 6138.565845 3.788066919 0.761616 62 14 SH3748 3748 Val4 5' flank 31.074639 88.754837 59.914738 1.777533665 -0.003475 62 15 SH5405 5405 snR31 snR31 91 103 29.992436 83.888104 56.94027 1.755419522 0.036322 62 16 SH2943 2943 Ser1 5' flank 59.031765 100.772988 79.9023765 1.902559697 0.321582 62 17 SH10995 10995 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1861 1878 41830.99931 19668.76568 30749.8825 4.487843461 0.104617 62 18 SH8440 8440 snoRNA cluster 5 snR128 108.504556 264.048193 108.504556 156.543637 132.5240965 2.122294852 0.150068 62 19 SH14473 14473 MT 21S rRNA 21S rRNA3 29.41279 104.72732 29.41279 76.31453 52.86366 1.723157228 0.103104 62 20 SH2396 2396 Phe4 tRNA-exon/intron 31 48 28.734062 89.955002 59.344532 1.773380709 -0.129063 62 21 SH10072 10072 RUF6 RUF6 206 223 28.227766 75.306583 51.7671745 1.714054461 0.038932 62 22 SH5630 5630 snR34 snR34 71 90 28.076214 73.434549 50.7553815 1.705482096 0.053714 62 23 SH4088 4088 SRP RNA SRP RNA 331 343 34.698379 103.555416 69.1268975 1.839647066 -0.19002 62 24 SH19215 19215 YPL081W_16_404945_406039_INTRON_8_508 intron 25.16831 86.117717 25.16831 61.949407 43.5588585 1.63907649 0.012576 62 25 SH10041 10041 RUF6 RUF6 51 67 47.305453 106.000533 76.652993 1.884529117 0.023042 62 26 SH11172 11172 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2746 2763 48.71182 103.430095 76.0709575 1.881218883 0.098114 62 27 SH14903 14903 MT tRNA Ile 3' 26.252923 109.869451 26.252923 84.616528 55.4347255 1.743781901 -0.214428 62 28 SH17161 17161 YHR016C_8_138446_136872_INTRON_48_215 intron 29.428784 104.668547 29.428784 76.239763 52.8342735 1.72291574 0.10511 62 29 SH9633 9633 RUF4 5' 152.371934 186.991603 169.6817685 2.229635182 0.249014 62 30 SH15769 15769 YCR097W_3_293828_294314_INTRON_106_159 intron 26.805694 107.867894 26.805694 82.0622 54.433947 1.735869826 -0.144478 62 31 SH12325 12325 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.17785 101.800068 27.17785 75.622218 51.400034 1.710963406 -0.037084 62 32 SH9616 9616 RUF3 3' 27.190952 78.078188 52.63457 1.721271079 -0.067764 62 33 SH8493 8493 snR19 / U1 RNA 5' 29.612323 77.979986 53.7961545 1.730751232 0.094228 62 34 SH10045 10045 RUF6 RUF6 71 90 27.535541 76.558458 52.0469995 1.716395698 -0.024356 62 35 SH21577 21577 copy of SH5623 27.707528 71.852851 49.7801895 1.697056546 0.049151 62 36 SH3354 3354 Thr3 3' flank 32.508332 95.285145 63.8967385 1.805478691 -0.076087 62 37 SH19581 19581 AEP2/ATP13 0.6 30.110909 95.626706 62.8688075 1.798435223 -0.161006 62 38 SH5563 5563 snR33 snR33 101 118 27.633511 76.897265 52.265388 1.718214179 -0.022085 62 39 SH5384 5384 snR31 5' - 4 -14 4 33.226701 95.076253 64.151477 1.80720666 -0.052948 62 40 SH9191 9191 snR7 U5 RNA 3' 27.237622 69.811567 48.5245945 1.685961915 0.043866 62 41 SH13150 13150 MT COX1 intronic 31.725045 124.363805 31.725045 93.63876 62.6819025 1.79714217 -0.06154 62 42 SH6523 6523 snR46 snR46 106 125 26.75821 72.749398 49.753804 1.696826291 -0.029887 62 43 SH13787 13787 MT COB intronic 47.110673 139.934199 47.110673 93.823526 70.4670995 1.847986396 0.266936 62 44 SH12329 12329 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.359056 110.10622 28.359056 82.747164 55.55311 1.744708377 -0.046661 62 45 SH18666 18666 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.308168 106.963455 30.308168 77.655287 53.9817275 1.732246779 0.142169 62 46 SH3362 3362 Thr3 3' flank 41.480317 109.233253 75.356785 1.877122362 -0.150598 62 47 SH10581 10581 RUF8 RUF8 831 848 27.889966 77.002323 52.4461445 1.719713567 -0.006047 62 48 SH6075 6075 snR37 snR37 291 308 64.671909 105.840602 85.2562555 1.930726254 0.313011 62 49 SH14811 14811 "MT tRNAs (Lys, Arg1, Gly)" intergenic / tRNA Arg1 28.453898 104.896384 28.453898 77.442486 52.948192 1.723851135 0.025964 62 50 SH14767 14767 MT ORF11; tRNA Leu; tRNA Gln ORF11 26.566899 95.049288 26.566899 69.482389 48.024644 1.681464154 0.000385 62 51 SH5545 5545 snR33 snR33 11 26 33.785778 83.420123 58.6029505 1.767919482 0.204375 62 52 SH584 584 Gln1 5' flank 27.016944 81.497829 54.2573865 1.734458871 -0.122778 62 53 SH8257 8257 snoRNA cluster4 5' 27.070679 98.008329 27.070679 71.93765 49.5041645 1.694641735 0.003239 62 54 SH20769 20769 YKL002W spliced 33.919391 94.097412 64.0084015 1.806236982 -0.014298 62 55 SH15404 15404 YBL050W_2_125087_126081_INTRON_31_146 3' exon 31.495704 105.763712 31.495704 75.268008 53.381856 1.727393669 0.245847 62 56 SH4633 4633 snR3 snR3 81 97 33.911458 95.782417 64.8469375 1.811889471 -0.050539 62 57 SH6485 6485 snR46 5' 29.360578 71.832169 50.5963735 1.70411939 0.160361 62 58 SH10042 10042 RUF6 RUF6 56 72 29.294242 83.018958 56.1566 1.749400806 0.011187 62 59 SH6258 6258 snR42 snR42 71 91 31.457023 76.984929 54.220976 1.734167331 0.22095 62 60 SH20431 20431 YGL033W spliced 29.124678 85.309727 57.2172025 1.75752662 -0.028969 62 61 SH8671 8671 LSR1 / U2 RNA 5' - 11 -4 11 31.759179 86.653924 59.2065515 1.772369766 0.062747 62 62 SH21298 21298 YPL198W spliced 27.770912 80.379538 54.075225 1.732998335 -0.057083 62 63 SH17153 17153 YHR012W_8_129473_130440_INTRON_49_167 intron 30.7833 115.193388 30.7833 85.410088 58.096694 1.76415142 0.043342 62 64 SH5191 5191 snR13 111-124 + 3' 111 28.368877 82.406207 55.387542 1.743412092 -0.041875 62 65 SH6023 6023 snR37 snR37 31 53 27.40692 70.915318 49.161119 1.69162176 0.040746 62 66 SH1010 1010 Gly2 tRNA 41 53 44.14289 113.690072 78.916481 1.897167711 -0.178279 62 67 SH19930 19930 YBL018C spliced 27.48733 74.26363 50.87548 1.70650852 0.002118 62 68 SH2826 2826 Pro7 5' flank 29.702298 88.987297 59.3447975 1.773382652 -0.067975 62 69 SH10782 10782 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 796 814 27.875062 84.660555 56.2678085 1.750260001 -0.101983 62 70 SH734 734 Gln4 5' flank 25.804625 81.139385 53.472005 1.728126469 -0.204869 62 71 SH17606 17606 YJL205C-A_10_50443_50139_INTRON_33_175 intron 34.253495 130.599804 34.253495 97.346309 65.799902 1.818225247 -0.07485 62 72 SH9839 9839 RUF5-1 RUF5-1 1 22 25.088737 70.778157 47.933447 1.680638661 -0.127592 62 73 SH3628 3628 Val1 3' flank 40.129198 90.029647 65.0794225 1.81344369 0.21832 62 74 SH19071 19071 YOR293W_15_867094_867848_INTRON_53_489 intron 27.327007 119.085707 27.327007 92.7587 60.0428535 1.778461324 -0.243742 62 75 SH13261 13261 MT COX1 COX1-ai4 24.922089 105.357367 24.922089 81.435278 53.1786835 1.725737582 -0.275016 62 76 SH7356 7356 snR68 snR68 1 20 43.537571 88.74954 66.1435555 1.820487536 0.31493 62 77 SH7225 7225 snR65 5' 34.730867 92.427045 63.578956 1.803313392 0.04228 62 78 SH8279 8279 snoRNA cluster4 snR67/intergenic 26.576647 105.917864 26.576647 80.341217 53.458932 1.728020278 -0.139427 62 79 SH13696 13696 MT ORF 5 (hypothetical) 3' 33.092939 123.215756 33.092939 91.122817 62.107878 1.793146691 0.029848 62 80 SH3338 3338 Thr3 tRNA 36 52 112.073359 192.390424 152.2318915 2.182505644 -0.164753 62 81 SH2684 2684 Pro4 tRNA 86 100 36.166937 90.652095 63.409516 1.802154438 0.116287 62 82 SH19888 19888 Positive Control 4 47.101641 107.381059 77.24135 1.887849856 -0.006593 62 83 SH4257 4257 telomerase RNA telomerase 321 338 29.072321 94.414589 61.743455 1.790590928 -0.188251 62 84 SH21038 21038 YMR133W spliced 27.903801 86.189312 57.0465565 1.756229434 -0.11796 62 85 SH18759 18759 YNL162W_14_331319_332151_INTRON_5_516 intron 28.166753 99.210881 28.166753 72.044128 50.1054405 1.699884885 0.078257 62 86 SH7899 7899 snoRNA cluster1 intergenic 30.178024 105.544824 30.178024 76.3668 53.272412 1.726502361 0.150813 62 87 SH2503 2503 Pro1 tRNA 6 22 332.269321 438.234681 385.252001 2.585744903 -0.180867 62 88 SH16603 16603 YFL034C-B_6_63992_63015_INTRON_21_134 5' exon 68.29246 179.973486 68.29246 112.681026 90.486743 1.956584956 0.246972 62 89 SH7927 7927 snoRNA cluster1 snR72 30.418591 115.811244 30.418591 86.392653 58.405622 1.766454653 0.009696 62 90 SH5947 5947 snR36 snR36 191 217 26.124843 69.77997 47.9524065 1.680810407 -0.03603 62 91 SH1863 1863 Leu9 tRNA-intron/exon 56 72 25.727765 70.05713 47.8924475 1.680267032 -0.069329 62 92 SH9990 9990 RUF5-1 RUF5-1 756 772 28.852623 87.366718 58.1096705 1.764248413 -0.078388 62 93 SH11498 11498 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4376 4391 37.903785 160.98629 99.4450375 1.997583116 -1.006097 62 94 SH15496 15496 YBL092W_2_45639_46364_INTRON_1_333 intron 45.814363 190.349025 45.814363 145.534662 95.6745125 1.980796258 -0.630836 62 95 SH713 713 Gln3 3' flank 25.5859 71.946808 48.766354 1.688120287 -0.105518 62 96 SH902 902 Glu3 tRNA 21 37 92.484836 176.551529 134.5181825 2.128780991 -0.241824 62 97 SH11634 11634 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5056 5073 54.065388 97.105787 75.5855875 1.878438993 0.316944 62 98 SH2033 2033 Lys3 3' flank 28.011481 84.17712 56.0943005 1.748918737 -0.087051 62 99 SH8530 8530 snR19 / U1 RNA U1 146 160 31.969642 96.251635 64.1106385 1.806930102 -0.110863 62 100 SH10410 10410 RUF8 5' 27.862907 87.759472 57.8111895 1.762011905 -0.138799 62 101 SH14312 14312 MT VAR1 includes 5’ processing site VAR1 26.089291 100.99767 26.089291 75.908379 50.998835 1.707560255 -0.11943 62 102 SH8935 8935 snR17a / U3a 5' 25.788622 68.352595 47.0706085 1.672749813 -0.041143 62 103 SH1312 1312 Ile3 5' flank 202.023531 449.483736 325.7536335 2.512889269 -0.853803 62 104 SH16525 16525 YER131W_5_423587_424307_INTRON_1_361 intron 218.429427 835.942045 218.429427 618.512618 418.4710225 2.62166539 -1.270555 63 2 SH17706 17706 YKL081W_11_282533_284097_INTRON_206_531 intron 26.270486 97.110383 26.270486 71.839897 49.0551915 1.690684975 -0.053241 63 3 SH13167 13167 MT COX1 intronic 28.662772 121.261378 28.662772 93.598606 61.130689 1.786259291 -0.193812 63 4 SH14358 14358 MT ORF9 and ORF10 (hypothetical) ORF9 28.715564 97.180532 28.715564 69.464968 49.090266 1.690995385 0.150402 63 5 SH14330 14330 MT VAR1 includes 5’ processing site VAR1 26.605579 93.584428 26.605579 67.978849 47.292214 1.674789646 0.024179 63 6 SH19186 19186 YPL079W_16_406631_407534_INTRON_12_432 intron 26.782192 103.137722 26.782192 77.35553 52.068861 1.716578078 -0.087072 63 7 SH20706 20706 YJL024C spliced 29.131074 77.136559 53.1338165 1.725371012 0.074244 63 8 SH1772 1772 Leu7 3' flank 31.221841 81.180117 56.200979 1.749743881 0.140852 63 9 SH14292 14292 MT VAR1 includes 5’ processing site VAR1 28.531583 98.19033 28.531583 70.658747 49.595165 1.695439339 0.121673 63 10 SH2626 2626 Pro3 tRNA 81 95 34.910383 85.210427 60.060405 1.778588256 0.211771 63 11 SH5260 5260 snR30 snR30 151 163 34.797766 88.757879 61.7778225 1.790832597 0.126182 63 12 SH7188 7188 snR64 snR64 6 22 6609.45283 7292.002612 6950.727721 3.842030276 -0.734512 63 13 SH9216 9216 snR6 / U6 RNA 5' 32.880239 77.89524 55.3877395 1.743413641 0.274018 63 14 SH13102 13102 MT COX1 COX1ai3 28.37256 96.238548 28.37256 68.865988 48.619274 1.68680847 0.13557 63 15 SH12991 12991 MT COX1 COX1ai2 33.082619 126.731822 33.082619 94.649203 63.865911 1.805269111 -0.047521 63 16 SH5330 5330 snR30 snR30 501 517 28.949172 68.890781 48.9199765 1.68948624 0.17397 63 17 SH13430 13430 MT COX1 intronic 29.571452 93.680012 29.571452 65.10856 47.340006 1.675228309 0.269112 63 18 SH18405 18405 YMR125W_13_517538_520445_INTRON_26_347 intron 27.312763 101.164142 27.312763 74.851379 51.082071 1.708268496 -0.017716 63 19 SH21152 21152 YNL265C spliced 26.543379 86.437767 56.490573 1.75197598 -0.215018 63 20 SH20925 20925 YLR367W spliced 29.817691 88.737745 59.277718 1.772891476 -0.058441 63 21 SH17216 17216 YHR041C_8_189855_189122_INTRON_15_115 5' exon 29.112338 112.649397 29.112338 84.537059 56.8246985 1.75453714 -0.018693 63 22 SH11573 11573 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4751 4764 40.21315 96.194304 68.203727 1.833808107 0.083429 63 23 SH12385 12385 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.728378 119.903861 29.728378 91.175483 60.4519305 1.781410174 -0.10438 63 24 SH19139 19139 YPL075W_16_412249_415357_INTRON_9_759 intron 25.028333 110.765425 25.028333 86.737092 55.8827125 1.747277478 -0.329215 63 25 SH20821 20821 YKR057W spliced 30.284049 95.70106 62.9925545 1.79928922 -0.154534 63 26 SH8814 8814 LSR1 / U2 RNA U2 711 723 38.282512 82.081836 60.182174 1.779467872 0.366546 63 27 SH16081 16081 YDR025W_4_491510_492319_INTRON_46_384 intron 24.418809 83.898081 24.418809 60.479272 42.4490405 1.627867878 -0.019525 63 28 SH9234 9234 snR6 / U6 RNA U6 41 58 129.252853 305.887319 217.570086 2.337599183 -0.775708 63 29 SH16080 16080 YDR025W_4_491510_492319_INTRON_46_384 intron 30.644102 117.757531 30.644102 88.113429 59.3787655 1.773631164 -0.010928 63 30 SH2941 2941 Ser1 5' flank 28.887765 88.052905 58.470335 1.766935582 -0.088862 63 31 SH21803 21803 copy of SH15073 26.90684 78.122516 52.514678 1.720280707 -0.088123 63 32 SH17670 17670 YKL006C-A_11_430270_429836_INTRON_37_177 intron 31.682017 118.227492 31.682017 87.545475 59.613746 1.775346413 0.043657 63 33 SH20464 20464 YGL183C spliced 34.275508 92.965143 63.6203255 1.803595887 0.019212 63 34 SH11212 11212 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2946 2961 93.65793 158.483275 126.0706025 2.100613828 -0.03865 63 35 SH11148 11148 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2626 2643 27462.3794 14902.54067 21182.46004 4.325976396 -0.007045 63 36 SH11630 11630 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5036 5052 30.01972 81.841387 55.9305535 1.747649117 0.071584 63 37 SH18029 18029 YLR316C_12_766358_765266_INTRON_230_285 5' exon 30.08257 104.598232 30.08257 75.515662 52.799116 1.722626651 0.156065 63 38 SH16264 16264 YDR424C_4_1319830_1319376_INTRON_26_121 intron/exon 27.677968 103.776537 27.677968 77.098569 52.3882685 1.719234045 -0.021674 63 39 SH9119 9119 snR14 / U4 RNA 3' 27.554663 81.43661 54.4956365 1.736361729 -0.084893 63 40 SH12658 12658 MT_15S MT_15S 27.446615 102.00269 27.446615 75.556075 51.501345 1.711818571 -0.017293 63 41 SH1857 1857 Leu9 tRNA-exon/intron 26 41 61.443378 146.511652 103.977515 2.016939434 -0.351919 63 42 SH3631 3631 Val1 3' flank 31.711069 100.775832 66.2434505 1.821142946 -0.211078 63 43 SH15057 15057 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.931153 98.586126 26.931153 72.654973 49.793063 1.697168843 -0.016234 63 44 SH15411 15411 YBL059C-A_2_110500_110086_INTRON_35_119 intron/exon 29.074606 103.34725 29.074606 75.272644 52.173625 1.717451012 0.095078 63 45 SH19292 19292 YPL175W_16_218629_220087_INTRON_18_117 intron 31.093195 105.469887 31.093195 75.376692 53.2349435 1.726196797 0.220168 63 46 SH14848 14848 MT tRNA Asp 3' 28.55627 102.184757 28.55627 74.628487 51.5923785 1.71258555 0.069789 63 47 SH10296 10296 RUF7 RUF7 91 113 28.45483 81.65011 55.05247 1.740776809 -0.026946 63 48 SH7456 7456 snR69 3' 30.701471 74.983016 52.8422435 1.722981248 0.201523 63 49 SH19354 19354 YPL249C-A_16_76239_75699_INTRON_17_254 intron 28.565374 103.669861 28.565374 76.104487 52.3349305 1.718791652 0.050781 63 50 SH19574 19574 AEP2/ATP13 0.6 28.744066 87.715053 58.2295595 1.765143505 -0.089589 63 51 SH10828 10828 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1026 1044 304.063811 362.104174 333.0839925 2.522553762 0.013979 63 52 SH7746 7746 snoRNA cluster1 intergenic 28.910095 101.606169 28.910095 73.696074 51.3030845 1.710143477 0.10558 63 53 SH15500 15500 YBL092W_2_45639_46364_INTRON_1_333 intron/exon 31.283366 111.599273 31.283366 81.315907 56.2996365 1.750505591 0.140901 63 54 SH8610 8610 snR19 / U1 RNA U1 546 562 29.047021 72.740799 50.89391 1.706665817 0.127545 63 55 SH16171 16171 YDR139C_4_733917_733611_INTRON_150_222 3' exon 29.108189 122.604935 29.108189 94.496746 61.8024675 1.791005815 -0.187947 63 56 SH13829 13829 MT COB Cytbi2 26.849303 96.451524 26.849303 70.602221 48.725762 1.68775864 0.005406 63 57 SH3000 3000 Ser2 5' flank 26.802971 76.37496 51.5889655 1.712556819 -0.073337 63 58 SH18912 18912 YOL120C_15_94401_93394_INTRON_113_559 intron 31.347755 98.900249 31.347755 68.552494 49.9501245 1.698536575 0.330545 63 59 SH9105 9105 snR14 / U4 RNA U4 141 158 26.689274 75.280867 50.9850705 1.707443024 -0.067678 63 60 SH12923 12923 MT COX1 COX1ai2 31.218976 105.5993 31.218976 75.380324 53.29965 1.726724357 0.227727 63 61 SH18510 18510 YMR201C_13_667043_665844_INTRON_28_111 5' exon 33.67335 128.585332 33.67335 95.911982 64.792666 1.81152585 -0.059307 63 62 SH5620 5620 snR34 snR34 21 37 31.952902 80.148777 56.0508395 1.748582122 0.191609 63 63 SH15725 15725 YBR255C-A_2_727032_726576_INTRON_64_157 intron/exon 29.136728 106.958695 29.136728 78.821967 53.9793475 1.732227631 0.052969 63 64 SH21538 21538 copy of SH3944 28.086491 76.847266 52.4668785 1.719885227 0.009202 63 65 SH4174 4174 telomerase RNA 5' 27.218547 75.361287 51.289917 1.710031996 -0.030885 63 66 SH13492 13492 MT COX1 intronic / Exon5g 28.071338 90.715113 28.071338 63.643775 45.8575565 1.66141091 0.190688 63 67 SH9279 9279 RUF1 5' 33.79446 92.664489 63.2294745 1.800919572 0.013709 63 68 SH470 470 Asp2 5' flank 27.4665 81.218152 54.342326 1.735138223 -0.088242 63 69 SH20416 20416 YGL030W spliced 34.567438 94.065952 64.316695 1.80832372 0.002557 63 70 SH2304 2304 Phe2 3' flank 25.832351 73.210205 49.521278 1.694791844 -0.103761 63 71 SH13665 13665 MT ATP6 ATP6 26.536595 104.431264 26.536595 78.894669 52.715632 1.721939418 -0.124077 63 72 SH2296 2296 Phe2 tRNA 76 91 44.815216 111.850656 78.332936 1.893944405 -0.132282 63 73 SH17912 17912 YLR061W_12_263195_263949_INTRON_13_401 intron 25.339126 91.592788 25.339126 67.253662 46.296394 1.665547165 -0.058267 63 74 SH8837 8837 LSR1 / U2 RNA U2 826 842 30.114886 85.362383 57.7386345 1.761466509 0.014825 63 75 SH13684 13684 MT ORF 5 (hypothetical) ORF5 25.531965 93.069401 25.531965 68.537436 47.0347005 1.672418383 -0.062997 63 76 SH16401 16401 YER056C-A_5_270183_269421_INTRON_38_434 intron 29.128639 115.013131 29.128639 86.884492 58.0065655 1.763477152 -0.057083 63 77 SH3197 3197 Ser5 3' flank 28.672834 73.476849 51.0748415 1.708207028 0.093035 63 78 SH1447 1447 Leu2 tRNA 6 18 32346.11125 36773.14453 34559.62789 4.538569058 -1.219048 63 79 SH656 656 Gln2 66-72 + 3' flank 66 3' flank 28.991619 70.005393 49.498506 1.694592091 0.161391 63 80 SH9120 9120 snR14 / U4 RNA 3' 26.993451 87.349767 57.171609 1.757180415 -0.193846 63 81 SH20657 20657 YIL018W spliced 33.52335 83.35278 58.438065 1.766695827 0.195188 63 82 SH5617 5617 snR34 snR34 6 22 27.308384 71.888768 49.598576 1.695469208 0.020727 63 83 SH7504 7504 snR71 3' 27.853107 69.953542 48.9033245 1.689338384 0.084949 63 84 SH5817 5817 snR35 snR35 271 287 34.921761 90.598157 62.759959 1.797682651 0.08755 63 85 SH16441 16441 YER074W_5_306319_307192_INTRON_4_469 intron 27.860053 96.256647 27.860053 69.396594 48.6283235 1.686889297 0.0931 63 86 SH17497 17497 YJL041W_10_365480_368069_INTRON_2_119 intron 32.788013 130.739921 32.788013 98.951908 65.8699605 1.818687403 -0.145443 63 87 SH5468 5468 snR32 snR32 1 20 33.66967 95.247982 64.458826 1.809282391 -0.045293 63 88 SH20236 20236 YDR305C spliced 27.41679 69.666456 48.541623 1.686114293 0.058489 63 89 SH11070 11070 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2236 2253 36.894467 82.664999 59.779733 1.776553971 0.320603 63 90 SH1778 1778 Leu8 5' flank 28.065737 92.212664 60.1392005 1.77915765 -0.198908 63 91 SH3614 3614 Val1 66-74 + 3' flank 66 27.497813 82.486377 54.992095 1.740300265 -0.101609 63 92 SH19542 19542 CBP1 1.2 26.501007 62.595058 44.5480325 1.648828528 0.098483 63 93 SH1617 1617 Leu5 5' flank 24.747409 74.317759 49.532584 1.694890985 -0.200799 63 94 SH18106 18106 YLR367W_12_855877_857316_INTRON_698_1180 intron 29.705302 185.915285 29.705302 157.209983 93.4576425 1.970614822 -1.175272 63 95 SH19735 19735 Negative Control 32.152589 125.697261 78.924925 1.897214178 -0.652389 63 96 SH4761 4761 snR5 5' 28.207753 89.746109 58.976931 1.770682169 -0.150209 63 97 SH2056 2056 Lys4 5' flank 26.056218 73.309263 49.6827405 1.696205544 -0.088441 63 98 SH17034 17034 YGR183C_7_859471_859058_INTRON_4_216 intron 27.908552 99.63605 27.908552 72.727498 50.318025 1.701723587 0.051463 63 99 SH16150 16150 YDR092W_4_629869_630598_INTRON_31_298 intron 40.302621 137.059621 40.302621 97.757 69.0298105 1.839036681 0.052019 63 100 SH1704 1704 Leu6 3' flank 28.069912 76.29358 52.181746 1.717518606 0.015329 63 101 SH11561 11561 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4691 4706 14103.50281 8657.415513 11380.45916 4.056159785 -0.018358 63 102 SH19868 19868 Negative Control 31.868643 90.351804 61.1102235 1.786113872 0.002706 63 103 SH12894 12894 MT COX1 intronic 27.373483 106.567848 27.373483 80.194365 53.783924 1.730652485 -0.081933 63 104 SH18684 18684 YNL112W_14_413636_416278_INTRON_1274_2275 intron 250.371536 804.874234 250.371536 555.502698 402.937117 2.605237275 -0.923531 64 2 SH20101 20101 YDL061C spliced 29.461022 89.876621 59.6688215 1.77574746 -0.094275 64 3 SH13205 13205 MT COX1 COX1-ai4 27.151366 101.201286 27.151366 75.04992 51.100643 1.708426365 -0.031672 64 4 SH12209 12209 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.665598 121.176043 31.665598 90.510445 61.0880215 1.78595606 -0.008562 64 5 SH19050 19050 YOR234C_15_779404_778554_INTRON_20_546 intron 30.083442 121.55849 30.083442 92.475048 61.279245 1.787313406 -0.110383 64 6 SH4740 4740 snR4 3' 37.467471 86.234586 61.8510285 1.791346926 0.24793 64 7 SH13073 13073 MT COX1 COX1ai3 28.748743 115.352293 28.748743 87.60355 58.1761465 1.764744951 -0.087404 64 8 SH16395 16395 YER044C-A_5_239773_238459_INTRON_64_151 3' exon 26.620715 91.412391 26.620715 65.791676 46.2061955 1.664700211 0.056656 64 9 SH20943 20943 YLR426W spliced 28.957714 76.054556 52.506135 1.720210051 0.077141 64 10 SH5124 5124 snR11 snR11 221 242 25.548999 67.815896 46.6824475 1.669153617 -0.05131 64 11 SH5777 5777 snR35 snR35 71 95 26.51897 57.81807 42.16852 1.624988359 0.180423 64 12 SH15939 15939 YDL115C_4_255042_253994_INTRON_1_88 intron/exon 69.849728 192.092551 69.849728 123.242823 96.5462755 1.984735525 0.100636 64 13 SH2987 2987 Ser1 3' flank 26.209225 63.922496 45.0658605 1.653847668 0.056464 64 14 SH1974 1974 Lys2 71-73 + 3' flank 71 88 26.275932 63.241551 44.7587415 1.650877867 0.072098 64 15 SH10244 10244 RUF6 3' 26.410961 74.691779 50.55137 1.70373293 -0.080327 64 16 SH16658 16658 YFR032C-A_6_223758_223245_INTRON_1_331 exon/intron 28.958119 112.641292 28.958119 84.683173 56.820646 1.754506167 -0.030429 64 17 SH17624 17624 YJR094W-A_10_608000_608553_INTRON_3_277 intron 29.264195 108.039963 29.264195 79.775768 54.5199815 1.7365557 0.049151 64 18 SH16322 16322 YDR471W_4_1401759_1402553_INTRON_32_415 intron 75.170379 215.705681 75.170379 141.535302 108.3528405 2.034840301 -0.076874 64 19 SH21076 21076 YMR230W spliced 25.932877 81.174432 53.5536545 1.728789112 -0.19596 64 20 SH8902 8902 LSR1 / U2 RNA U2 1151 1163 43.000555 84.30868 63.6546175 1.803829913 0.410601 64 21 SH4945 4945 snR9 snR9 131 146 43.069357 93.938507 68.503932 1.8357155 0.188831 64 22 SH9606 9606 RUF3 416-431 + 3' 416 24.640433 64.802403 44.721418 1.650515565 -0.0728 64 23 SH7624 7624 snR189 3' 25.254331 67.996966 46.6256485 1.668624885 -0.075703 64 24 SH14762 14762 MT ORF11; tRNA Leu; tRNA Gln ORF11 25.112945 87.638099 25.112945 63.525154 44.3190495 1.646590438 -0.017066 64 25 SH5562 5562 snR33 snR33 96 112 30.744934 84.392509 57.5687215 1.760186585 0.060214 64 26 SH14542 14542 MT 21S rRNA 21S rRNA3 26.368641 116.82549 26.368641 91.456849 58.912745 1.770209259 -0.283973 64 27 SH18100 18100 YLR367W_12_855877_857316_INTRON_698_1180 intron 26.840379 94.232148 26.840379 68.391769 47.616074 1.677753584 0.035289 64 28 SH1002 1002 Gly2 tRNA 1 13 57.228912 119.953273 88.5910925 1.947390057 -0.045396 64 29 SH10986 10986 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1816 1833 28262.40701 13534.32865 20898.36783 4.320112369 0.18256 64 30 SH4653 4653 snR3 181-195 + 3' 181 27.583938 71.425919 49.5049285 1.694648438 0.046261 64 31 SH1700 1700 Leu6 tRNA 66 78 30.201302 77.627526 53.914414 1.731704889 0.135871 64 32 SH13276 13276 MT COX1 Exon 5a 28.58492 116.335221 28.58492 88.750301 58.6676105 1.7683984 -0.115171 64 33 SH11772 11772 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5746 5763 1767.084019 1493.126043 1630.105031 3.212215588 0.053091 64 34 SH4608 4608 snR3 5' 29.413742 72.30282 50.858281 1.706361677 0.157231 64 35 SH5280 5280 snR30 snR30 251 266 31.854561 91.196831 61.525696 1.789056535 -0.012286 64 36 SH21397 21397 Pro2_7 spliced 67.673051 128.522926 98.0979885 1.991660102 -0.009713 64 37 SH4199 4199 telomerase RNA telomerase 31 48 29.677565 89.568518 59.6230415 1.775414127 -0.079161 64 38 SH19635 19635 RNA14 2.2 29.607123 79.255371 54.431247 1.735848284 0.077655 64 39 SH15581 15581 YBR084C-A_2_415219_414144_INTRON_3_508 intron 34.109033 132.525241 34.109033 99.416208 66.7626205 1.824533375 -0.121188 64 40 SH416 416 Asp1 5' flank 27.121611 80.799062 53.9603365 1.732074649 -0.106871 64 41 SH8285 8285 snoRNA cluster4 intergenic 31.931523 124.755685 31.931523 93.824162 62.8778425 1.798497632 -0.060012 64 42 SH17192 17192 YHR021C_8_148660_147862_INTRON_4_553 intron 32.161236 120.538481 32.161236 89.377245 60.7692405 1.783683809 0.031715 64 43 SH13754 13754 MT COB Exon1 27.611975 99.831176 27.611975 73.219201 50.415588 1.702564837 0.024422 64 44 SH3013 3013 Ser2 tRNA 26 45 27.54748 84.84288 56.19518 1.749699067 -0.126411 64 45 SH20363 20363 YER131W spliced 103.580739 167.388978 135.4848585 2.131890762 -0.019347 64 46 SH8925 8925 snR17a / U3a 5' 26.756446 76.88659 51.821518 1.714510131 -0.083089 64 47 SH18598 18598 YNL069C_14_494998_493953_INTRON_29_477 intron 26.301731 96.693383 26.301731 71.391652 48.8466915 1.688835153 -0.044945 64 48 SH13218 13218 MT COX1 COX1-ai4 32.625235 131.254325 32.625235 99.62909 66.1271625 1.820379888 -0.163546 64 49 SH5910 5910 snR36 snR36 6 27 25.85081 79.159953 52.5053815 1.720203818 -0.177363 64 50 SH19950 19950 YBL050W spliced 32.643826 87.909038 60.276432 1.780147537 0.077273 64 51 SH9792 9792 RUF4 RUF4 736 755 28.265321 96.536008 62.4006645 1.795189214 -0.260304 64 52 SH12059 12059 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7181 7194 32.917053 92.599469 62.758261 1.797670901 -0.00735 64 53 SH13516 13516 MT COX1 intronic 30.977587 118.28468 30.977587 88.307093 59.64234 1.775554674 0.000162 64 54 SH17952 17952 YLR185W_12_522665_523290_INTRON_8_366 5' exon 33.583103 128.820287 33.583103 96.237184 64.9101435 1.812312569 -0.068474 64 55 SH15453 15453 YBL087C_2_60732_59815_INTRON_43_546 intron 28.992693 112.378976 28.992693 84.386283 56.689488 1.753502535 -0.024665 64 56 SH10833 10833 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1051 1069 1983.149243 1608.112195 1795.630719 3.254217027 0.088025 64 57 SH5489 5489 snR32 snR32 106 122 83.308584 161.726786 122.517685 2.088198782 -0.205089 64 58 SH21447 21447 copy of SH126 30.41464 91.886634 61.150637 1.786400985 -0.085854 64 59 SH6373 6373 snR43 snR43 106 118 30.601046 82.284483 56.4427645 1.751608277 0.093068 64 60 SH12426 12426 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.357247 102.230647 27.357247 75.8734 51.6153235 1.712778654 -0.027597 64 61 SH19111 19111 YOR312C_15_901173_900242_INTRON_2_427 intron/exon 28.634885 98.147514 28.634885 70.512629 49.573757 1.695251834 0.130619 64 62 SH15608 15608 YBR119W_2_479296_480281_INTRON_9_97 intron 31.327571 126.035837 31.327571 95.708266 63.5179185 1.802896258 -0.116708 64 63 SH18824 18824 YNL302C_14_62942_61957_INTRON_21_571 intron 27.311013 97.711257 27.311013 71.400244 49.3556285 1.693336687 0.027456 64 64 SH14586 14586 MT 21S rRNA intronic / sce1 29.897169 129.831931 29.897169 100.934762 65.4159655 1.815683756 -0.264623 64 65 SH7639 7639 snR189 3' 26.966583 78.757223 52.861903 1.723142793 -0.092046 64 66 SH9673 9673 RUF4 RUF4 141 156 37.004306 96.957966 66.981136 1.825952509 -0.001301 64 67 SH552 552 Cys1 61-72 + 3' flank 61 3' flank 38.293142 105.200635 71.7468885 1.855803071 -0.141426 64 68 SH15254 15254 MT tRNA fMet 3' 25.367223 98.774682 25.367223 74.407459 49.887341 1.697990357 -0.154318 64 69 SH11918 11918 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6476 6494 30.308171 75.964325 53.136248 1.725390885 0.164212 64 70 SH5414 5414 snR31 snR31 136 152 35.169127 84.422097 59.795612 1.776669315 0.236957 64 71 SH11868 11868 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6226 6239 110.186499 172.78194 141.4842195 2.150708003 -0.001296 64 72 SH4093 4093 SRP RNA SRP RNA 356 371 36.838861 87.945175 62.392018 1.795129033 0.193581 64 73 SH8496 8496 snR19 / U1 RNA 5' 30.418022 92.551915 61.4849685 1.788768955 -0.096865 64 74 SH8567 8567 snR19 / U1 RNA U1 331 348 28.523045 69.378616 48.9508305 1.689760064 0.138641 64 75 SH12749 12749 MT COX1 COX1ai1 32.789021 125.30843 32.789021 93.519409 63.154215 1.800402341 -0.030755 64 76 SH11382 11382 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3796 3813 29516.27743 19070.49841 24293.38792 4.385488085 -0.302268 64 77 SH15020 15020 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.112883 100.489682 29.112883 72.376799 50.744841 1.705391896 0.136835 64 78 SH11248 11248 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3126 3143 27989.17992 20059.17056 24024.17524 4.380648487 -0.451478 64 79 SH11027 11027 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2021 2040 7197.874281 5094.148881 6146.011581 3.788593374 -0.055603 64 80 SH3154 3154 Ser4 3' flank 27.832176 76.39143 52.111803 1.716936099 -0.00198 64 81 SH8252 8252 snoRNA cluster4 5' 26.293695 108.880496 26.293695 83.586801 54.940248 1.739890615 -0.199246 64 82 SH1213 1213 Ile1 tRNA 26 41 28.987496 89.448157 59.2178265 1.772452463 -0.108569 64 83 SH13286 13286 MT COX1 Exon 5a 29.208195 126.389203 29.208195 98.181008 63.6946015 1.804102625 -0.242524 64 84 SH11825 11825 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6011 6024 137.913124 127.499132 132.706128 2.122890978 0.782556 64 85 SH8268 8268 snoRNA cluster4 snR67 30.38842 113.292409 30.38842 83.903989 57.1462045 1.756987391 0.053585 64 86 SH591 591 Gln1 5' flank - tRNA13 5' flank 13 38.544823 103.870736 71.2077795 1.852527443 -0.109795 64 87 SH11175 11175 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2761 2778 78.751537 127.756159 103.253848 2.013906246 0.158878 64 88 SH6126 6126 snR39B 5' 36.82103 93.601376 65.211203 1.814322212 0.066593 64 89 SH4885 4885 snR8 3' 28.283205 70.791257 49.537231 1.694931727 0.103037 64 90 SH7224 7224 snR64 3' 30.319973 79.626844 54.9734085 1.740152665 0.1178 64 91 SH16255 16255 YDR397C_4_1266887_1266355_INTRON_38_129 intron/exon 31.547307 128.790576 31.547307 98.243269 64.895288 1.812213164 -0.163819 64 92 SH18046 18046 YLR333C_12_796335_795573_INTRON_1_423 intron 47.702323 255.435334 47.702323 208.733011 128.217667 2.10794787 -1.268445 64 93 SH18828 18828 YNL302C_14_62942_61957_INTRON_21_571 intron 30.297463 161.831585 30.297463 132.534122 81.4157925 1.910708655 -0.81053 64 94 SH6754 6754 snR50 5' 29.409595 113.647611 71.528603 1.854479743 -0.519571 64 95 SH9060 9060 snR14 / U4 RNA 5' 28.508908 115.060034 71.784471 1.856030504 -0.571238 64 96 SH12652 12652 MT_15S MT_15S 28.479567 128.523133 28.479567 101.043566 64.7615665 1.811317345 -0.320794 64 97 SH7831 7831 snoRNA cluster1 intergenic/snR74 28.329904 119.641221 28.329904 92.311317 60.3206105 1.780465728 -0.188023 64 98 SH16547 16547 YER133W_5_432491_433954_INTRON_178_702 intron 28.095091 100.131381 28.095091 73.03629 50.5656905 1.703855942 0.060226 64 99 SH8518 8518 snR19 / U1 RNA U1 86 107 27.917484 76.019633 51.9685585 1.715740671 0.008671 64 100 SH8430 8430 snoRNA cluster 5 intergenic 34.64406 113.199205 34.64406 79.555145 57.0996025 1.756633085 0.311338 64 101 SH14620 14620 MT 21S rRNA Sce1 endonuc 29.214494 117.590698 29.214494 89.376204 59.295349 1.77302063 -0.096884 64 102 SH1033 1033 Gly3 5' flank 27.928654 63.889733 45.9091935 1.661899663 0.177173 64 103 SH716 716 Gln3 3' flank 28.539735 97.951496 63.2456155 1.801030423 -0.26989 64 104 SH20921 20921 YLR344W spliced 294.403296 569.867106 432.135201 2.635619645 -0.758095 65 2 SH20339 20339 YER074W-A spliced 27.540577 73.482255 50.511416 1.703389543 0.015995 65 3 SH20852 20852 YLR061W spliced 36.768658 98.827693 67.7981755 1.831218007 -0.045954 65 4 SH14770 14770 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu 38.451996 146.144705 38.451996 108.692709 73.5723525 1.866714643 -0.205376 65 5 SH19332 19332 YPL218W_16_138697_139408_INTRON_29_167 3' exon 30.288102 101.505226 30.288102 72.217124 51.252613 1.709716012 0.213611 65 6 SH5351 5351 snR30 3' 28.000099 70.534364 49.2672315 1.692558158 0.087151 65 7 SH10525 10525 RUF8 RUF8 551 567 30.503633 105.630532 68.0670825 1.832937136 -0.339799 65 8 SH2169 2169 Met2 5' flank 32.89321 100.169494 66.531352 1.823026349 -0.167539 65 9 SH12965 12965 MT COX1 COX1ai2 28.759467 122.688862 28.759467 94.929395 61.844431 1.791300598 -0.211145 65 10 SH4789 4789 snR5 snR5 116 135 29.033362 94.102137 61.5677495 1.789353279 -0.184918 65 11 SH829 829 Glu2 5' flank 31.188396 122.528451 76.8584235 1.885691472 -0.624774 65 12 SH10141 10141 RUF6 RUF6 551 568 698.693742 669.349782 684.021762 2.835069919 0.094954 65 13 SH12629 12629 MT_15S MT_15S 30.122683 139.180127 30.122683 110.057444 70.0900635 1.845656453 -0.433909 65 14 SH18593 18593 YNL069C_14_494998_493953_INTRON_29_477 5' exon 62.118981 268.88813 62.118981 207.769149 134.944065 2.130153789 -0.975343 65 15 SH5704 5704 snR34 snR34 441 460 32.572559 197.181294 114.8769265 2.060232808 -1.542661 65 16 SH4227 4227 telomerase RNA telomerase 171 186 28.406391 85.818946 57.1126685 1.756732452 -0.080013 65 17 SH9073 9073 snR14 / U4 RNA 5' 30.833051 80.69356 55.7633055 1.74634851 0.13338 65 18 SH10630 10630 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 36 56 26.151209 76.549098 51.3501535 1.710541746 -0.12293 65 19 SH4038 4038 SRP RNA SRP RNA 81 97 27.692561 89.91081 58.8016855 1.769389775 -0.177717 65 20 SH19124 19124 YPL075W_16_412249_415357_INTRON_9_759 5' exon 26.647478 111.93854 26.647478 86.291062 56.46927 1.751812173 -0.205942 65 21 SH8315 8315 snoRNA cluster4 intergenic 34.380874 108.582126 34.380874 75.201252 54.791063 1.738709726 0.388199 65 22 SH18192 18192 YML024W_13_225889_226697_INTRON_4_401 intron 26.490696 107.473291 26.490696 81.982595 54.2366455 1.734292821 -0.165779 65 23 SH588 588 Gln1 5' flank 33.448498 99.377806 66.413152 1.822254093 -0.137118 65 24 SH6194 6194 snR40 snR40 31 46 33.333092 89.784661 61.5588765 1.789290685 0.06607 65 25 SH16661 16661 YFR032C-A_6_223758_223245_INTRON_1_331 intron 32.776444 121.996401 32.776444 90.219957 61.4982005 1.788862408 0.041855 65 26 SH19164 19164 YPL075W_16_412249_415357_INTRON_9_759 intron/exon 32.655278 117.468233 32.655278 85.812955 59.2341165 1.772571915 0.115075 65 27 SH4959 4959 snR9 3' 28.677998 83.485306 56.081652 1.748820798 -0.034481 65 28 SH2544 2544 Pro2 5' flank 24.429772 61.625193 43.0274825 1.633745937 -0.037761 65 29 SH9430 9430 RUF2 5' - 10 -9 10 30.536628 92.576173 61.5564005 1.789273217 -0.092062 65 30 SH20877 20877 YLR185W spliced 28.411939 80.681039 54.546489 1.736766802 -0.017834 65 31 SH4143 4143 SRP RNA SRP RNA 606 620 52.307468 111.221676 81.764572 1.912565168 0.017023 65 32 SH889 889 Glu3 5' flank 25.829952 79.188874 52.509413 1.720237163 -0.179268 65 33 SH14244 14244 MT tRNA Ser tRNA 28.855529 100.377519 28.855529 72.52199 50.6887595 1.704911663 0.118099 65 34 SH14738 14738 MT tRNA cys; tRNA his 3' 26.645554 94.504024 26.645554 68.85847 47.752012 1.678991675 0.014734 65 35 SH17515 17515 YJL136C_10_156971_156248_INTRON_25_484 intron 26.433216 99.470708 26.433216 74.037492 50.235354 1.701009467 -0.070262 65 36 SH19901 19901 snR17B spliced 60.071997 112.60391 86.3379535 1.93620175 0.123048 65 37 SH3515 3515 Tyr1 3' flank 29.167533 74.323776 51.7456545 1.713873884 0.113792 65 38 SH1412 1412 Leu1 3' flank 33.770215 71.60263 52.6864225 1.72169871 0.427211 65 39 SH18575 18575 YNL044W_14_545264_545873_INTRON_25_103 5' exon 28.836712 114.971763 28.836712 87.135051 57.9858815 1.763322264 -0.075019 65 40 SH6855 6855 snR56 5' 35.762057 89.145603 62.45383 1.795559077 0.140694 65 41 SH5950 5950 snR36 snR36 206 226 27.108851 72.326882 49.7178665 1.696512484 0.000774 65 42 SH12006 12006 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6916 6939 27.651887 75.832987 51.742437 1.71384688 -0.006879 65 43 SH1190 1190 Ile1 5' flank 31.470108 87.613929 59.5420185 1.774823553 0.033465 65 44 SH14534 14534 MT 21S rRNA 21S rRNA3 27.790434 107.575089 27.790434 80.784655 54.2875445 1.734700198 -0.060792 65 45 SH7724 7724 snoRNA cluster1 snR77/intergenic 32.052129 125.191603 32.052129 94.139474 63.0958015 1.800000462 -0.063603 65 46 SH18934 18934 YOL121C_15_92849_92025_INTRON_21_410 intron 26.658274 115.542822 26.658274 89.884548 58.271411 1.765455534 -0.246028 65 47 SH18608 18608 YNL069C_14_494998_493953_INTRON_29_477 intron 37.304993 124.664457 37.304993 88.359464 62.8322285 1.798182463 0.194785 65 48 SH19673 19673 SIR1 2.4 27.707198 78.045736 52.876467 1.72326243 -0.03191 65 49 SH4241 4241 telomerase RNA telomerase 241 255 45.395943 123.568424 84.4821835 1.92676513 -0.319273 65 50 SH17938 17938 YLR093C_12_327416_326514_INTRON_17_157 intron 27.694444 99.45873 27.694444 72.764286 50.229365 1.700957688 0.036146 65 51 SH2465 2465 Phe5 3' flank 27.900584 72.59014 50.245362 1.70109598 0.052727 65 52 SH12228 12228 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.485914 140.633759 39.485914 102.147845 70.8168795 1.850136786 -0.055449 65 53 SH19514 19514 ACT1 26.45772 74.274525 50.3661225 1.702138517 -0.071545 65 54 SH6896 6896 snR56 3' 26.693173 77.207135 51.950154 1.715586839 -0.091641 65 55 SH3287 3287 Thr2 tRNA 36 48 328.501863 333.44976 330.9758115 2.519796256 0.245335 65 56 SH78 78 Ala2 26-40 26 40 25.741274 72.993848 49.367561 1.693441671 -0.107723 65 57 SH356 356 Arg5 3' flank 43.102615 89.328575 66.215595 1.820960286 0.293256 65 58 SH4994 4994 snR10 snR10 1 18 105.905279 189.022128 147.4637035 2.168685137 -0.201701 65 59 SH10849 10849 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1131 1153 65.497105 103.333835 84.41547 1.926422043 0.371458 65 60 SH12576 12576 MT_15S MT_15S 30.190953 121.92257 30.190953 92.731617 61.461285 1.788601636 -0.109894 65 61 SH21145 21145 YNL246W spliced 35.021257 86.582719 60.801988 1.783917779 0.182039 65 62 SH19819 19819 Negative Control 28.454255 71.843327 50.148791 1.700260467 0.100493 65 63 SH17186 17186 YHR021C_8_148660_147862_INTRON_4_553 intron 31.029762 113.350792 31.029762 83.32103 57.175396 1.757209181 0.092323 65 64 SH17341 17341 YIL018W_9_316766_317930_INTRON_5_404 intron 29.036879 108.931072 29.036879 80.894193 54.965536 1.740090467 0.020519 65 65 SH18714 18714 YNL130C_14_381156_379555_INTRON_30_470 intron 26.593154 101.10003 26.593154 75.506876 51.050015 1.707995874 -0.077502 65 66 SH2566 2566 Pro2 tRNA-intron/exon 66 78 90.247403 159.827775 125.037589 2.097040591 -0.095572 65 67 SH2539 2539 Pro2 5' flank 27.757656 75.178151 51.4679035 1.711536478 0.008997 65 68 SH5783 5783 snR35 snR35 101 119 36.927023 101.459458 69.1932405 1.84006367 -0.096627 65 69 SH9258 9258 snR6 / U6 RNA 3' 98.401563 138.235265 118.318414 2.07305234 0.258315 65 70 SH14329 14329 MT VAR1 includes 5’ processing site VAR1 26.700318 92.934722 26.700318 67.234404 46.967361 1.671796159 0.041591 65 71 SH7659 7659 snoRNA cluster1 5' / snR78 28.970319 106.358948 28.970319 78.388629 53.679474 1.729808252 0.047696 65 72 SH14746 14746 MT ORF11; tRNA Leu; tRNA Gln 5' / orf11 25.466601 95.7805 25.466601 71.313899 48.39025 1.684757866 -0.10604 65 73 SH18993 18993 YOR122C_15_552886_552297_INTRON_14_222 exon/intron 28.95418 109.448422 28.95418 81.494242 55.224211 1.74212952 0.007746 65 74 SH13514 13514 MT COX1 intronic 26.590633 100.896027 26.590633 75.305394 50.9480135 1.707127255 -0.075121 65 75 SH4353 4353 telomerase RNA telomerase 801 820 28.358672 96.979781 62.6692265 1.797054334 -0.262986 65 76 SH21189 21189 YOL120C spliced 32.129302 80.491575 56.3104385 1.750588909 0.192375 65 77 SH19456 19456 CYC1 26.947167 86.779084 56.8631255 1.754830727 -0.190516 65 78 SH5321 5321 snR30 snR30 456 473 32.9159 84.151138 58.533519 1.767404634 0.155966 65 79 SH20947 20947 YLR448W spliced 42.221738 106.330131 74.2759345 1.870848125 -0.080777 65 80 SH10100 10100 RUF6 RUF6 346 365 28.079792 70.147774 49.113783 1.691203387 0.097899 65 81 SH16903 16903 YGL226C-A_7_73156_72747_INTRON_22_170 3' exon 29.293366 115.192014 29.293366 86.898648 58.096007 1.764146284 -0.049787 65 82 SH20517 20517 YGR034W spliced 30.07879 86.871156 58.474973 1.76697003 -0.013884 65 83 SH13896 13896 MT COB intronic 27.925785 107.62625 27.925785 80.700465 54.313125 1.734904791 -0.050594 65 84 SH19535 19535 CBP1 1.2 27.455986 70.53381 48.994898 1.690150858 0.049367 65 85 SH5994 5994 snR36 3' 28.835102 87.978263 58.4066825 1.766462539 -0.089992 65 86 SH4376 4376 telomerase RNA telomerase 916 932 28.124489 72.301515 50.213002 1.700816187 0.071943 65 87 SH11787 11787 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5821 5836 166.267139 263.403716 214.8354275 2.3321059 -0.219333 65 88 SH2935 2935 Ser1 5' flank 26.539697 90.817461 58.678579 1.768479588 -0.264766 65 89 SH1255 1255 Ile2 5' flank 29.17738 81.200046 55.188713 1.741850266 0.025835 65 90 SH19095 19095 YOR312C_15_901173_900242_INTRON_2_427 intron 26.506702 114.601723 26.506702 89.095021 57.8008615 1.761934311 -0.247938 65 91 SH1335 1335 Ile3 tRNA-intron 56 72 34.279823 168.518245 101.399034 2.006033818 -1.188219 65 92 SH20902 20902 YLR306W spliced 33.246262 137.416269 85.3312655 1.931108186 -0.805806 65 93 SH19200 19200 YPL081W_16_404945_406039_INTRON_8_508 intron 26.7001 84.713616 26.7001 59.013516 42.856808 1.632019821 0.172349 65 94 SH13595 13595 MT ATP8/AAP1 5' 28.913656 93.61806 28.913656 65.704404 47.30903 1.674944044 0.217048 65 95 SH12461 12461 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 8759.931583 14444.06913 8759.931583 5685.137544 7222.534564 3.858689629 0.026402 65 96 SH18080 18080 YLR344W_12_819312_820142_INTRON_20_466 intron 30.633471 105.129603 30.633471 75.496132 53.0648015 1.724806544 0.190517 65 97 SH14402 14402 MT 21S rRNA 21S rRNA3 36.704202 118.804158 36.704202 83.099956 59.902079 1.777441896 0.305527 65 98 SH14709 14709 MT tRNA thr2 3' 25.94469 95.719484 25.94469 70.774794 48.359742 1.684483975 -0.06294 65 99 SH11044 11044 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2106 2124 10036.6047 6087.300083 8061.95239 3.906440229 0.095455 65 100 SH20562 20562 YHR001W-A spliced 28.304168 83.56878 55.936474 1.747695087 -0.060204 65 101 SH6996 6996 snR60 snR60 61 80 29.321291 87.184098 58.2526945 1.765316019 -0.053585 65 102 SH6289 6289 snR42 snR42 226 243 33.717168 78.182996 55.950082 1.747800727 0.301956 65 103 SH19282 19282 YPL143W_16_282121_282969_INTRON_20_544 intron 26.204402 103.885344 26.204402 78.680942 52.442672 1.719684811 -0.145376 65 104 SH16250 16250 YDR397C_4_1266887_1266355_INTRON_38_129 exon/intron 303.519454 914.786002 303.519454 612.266548 457.893001 2.660764005 -0.834658 66 2 SH21402 21402 Pro8 spliced 34.316399 89.494089 61.905244 1.79172744 0.097502 66 3 SH20789 20789 YKL081W spliced 24.227302 72.152156 48.189729 1.682954484 -0.213327 66 4 SH9461 9461 RUF2 RUF2 146 162 37.120131 95.314473 66.217302 1.820971482 0.036533 66 5 SH13484 13484 MT COX1 intronic 24.51801 99.01168 24.51801 75.49367 50.00584 1.699020727 -0.233799 66 6 SH5451 5451 snR32 5' 25.525974 72.574288 49.050131 1.690640172 -0.118366 66 7 SH8444 8444 snoRNA cluster 5 snR128 29.989979 112.908209 29.989979 83.91823 56.9541045 1.755525028 0.035657 66 8 SH21059 21059 YMR194W spliced 32.104646 81.502652 56.803649 1.754376235 0.172036 66 9 SH14957 14957 MT tRNA Met 3' 30.211698 115.726578 30.211698 86.51488 58.363289 1.766139758 -0.001626 66 10 SH14052 14052 MT COB Cytbi4 25.986994 93.897833 25.986994 68.910839 47.4489165 1.6762263 -0.034191 66 11 SH3634 3634 Val2 5' flank 25.718329 77.004647 51.361488 1.710637597 -0.160769 66 12 SH20020 20020 YBR089C-A spliced 29.543943 83.359466 56.4517045 1.75167706 0.023081 66 13 SH310 310 Arg4 3' flank 40.304987 106.897532 73.6012595 1.866885246 -0.131393 66 14 SH2882 2882 Pro8 5' flank 305.177699 337.126465 321.152082 2.506710742 0.134174 66 15 SH10039 10039 RUF6 RUF6 41 57 43.576313 106.506058 75.0411855 1.875299686 -0.057065 66 16 SH11274 11274 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3256 3273 30.457985 88.506699 59.482342 1.77438806 -0.025971 66 17 SH6764 6764 snR50 5' - 15 -4 15 30.4692 77.768597 54.1188985 1.733348949 0.150693 66 18 SH4288 4288 telomerase RNA telomerase 476 492 43.783125 97.282427 70.532776 1.848390977 0.130724 66 19 SH6266 6266 snR42 snR42 111 130 27.546166 72.73648 50.141323 1.700195789 0.026174 66 20 SH21831 21831 copy of SH16331 26.855365 82.030142 54.4427535 1.735940082 -0.140599 66 21 SH9781 9781 RUF4 RUF4 681 697 38.818822 94.356554 66.587688 1.823393936 0.094182 66 22 SH3232 3232 Thr1 tRNA 16 28 24.223495 84.120505 54.172 1.73377487 -0.3609 66 23 SH2634 2634 Pro3 3' flank 26.557557 76.592537 51.575047 1.712439632 -0.093781 66 24 SH7574 7574 snR189 5' 26.473822 75.572284 51.023053 1.707766441 -0.086994 66 25 SH2098 2098 Lys4 3' flank 30.25683 86.177784 58.217307 1.765052112 0.006411 66 26 SH4055 4055 SRP RNA SRP RNA 166 184 26.067162 82.035501 54.0513315 1.732806397 -0.196793 66 27 SH19017 19017 YOR182C_15_678792_678190_INTRON_4_414 intron 32.545475 125.160244 32.545475 93.614769 63.080122 1.799892525 -0.039197 66 28 SH5267 5267 snR30 snR30 186 198 45.668927 98.389198 72.0290625 1.857507762 0.143921 66 29 SH11423 11423 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4001 4016 9418.568713 5181.429083 7299.998898 3.863322795 0.267678 66 30 SH17246 17246 YHR097C_8_298611_297387_INTRON_126_249 5' exon 47.56288 150.855929 47.56288 104.293049 75.9279645 1.880401757 0.060552 66 31 SH19202 19202 YPL081W_16_404945_406039_INTRON_8_508 intron 24.808994 94.705814 24.808994 70.89682 47.852907 1.679908326 -0.150793 66 32 SH7525 7525 snR79 5' 25.809757 73.060677 49.435217 1.694036445 -0.103484 66 33 SH17653 17653 YJR145C_10_702761_701720_INTRON_15_270 intron/exon 30.968649 116.653007 30.968649 86.684358 58.8265035 1.769573036 0.028467 66 34 SH11686 11686 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5316 5336 400.092138 391.656089 395.8741135 2.597557104 0.236898 66 35 SH19412 19412 YPR098C_16_729525_728944_INTRON_48_143 intron/exon 44.410943 137.725225 44.410943 94.314282 69.3626125 1.841125442 0.205834 66 36 SH16509 16509 YER117W_5_396765_397649_INTRON_43_513 intron 30.605826 122.749943 30.605826 93.144117 61.8749715 1.791515012 -0.098494 66 37 SH1985 1985 Lys2 3' flank 26.488181 79.721751 53.104966 1.725135135 -0.13796 66 38 SH14556 14556 MT 21S rRNA 21S rRNA3 69.304246 202.161788 69.304246 133.857542 101.580894 2.006812031 -0.060048 66 39 SH5595 5595 snR33 3' 26.241219 70.882071 48.561645 1.68629339 -0.042507 66 40 SH996 996 Gly2 5' flank 37.56686 95.675123 66.6209915 1.823611092 0.038585 66 41 SH6970 6970 snR60 5' 26.855644 83.901387 55.3785155 1.74334131 -0.163162 66 42 SH21729 21729 copy of SH12129 29.818259 85.691546 57.7549025 1.761588855 -0.004378 66 43 SH1728 1728 Leu7 5' flank 30.061052 88.031298 59.046175 1.771191769 -0.035197 66 44 SH14251 14251 MT tRNA Ser 3' 27.490083 116.090718 27.490083 89.600635 58.545359 1.767492473 -0.184968 66 45 SH3194 3194 Ser5 3' flank 34.070472 84.038762 59.054617 1.771253857 0.204176 66 46 SH19088 19088 YOR293W_15_867094_867848_INTRON_53_489 3' exon 124.427598 286.404188 124.427598 162.97659 143.702094 2.157463097 0.241213 66 47 SH21160 21160 YNL301C spliced 32.527994 73.817211 53.1726025 1.725687917 0.326099 66 48 SH1338 1338 Ile3 tRNA-intron 71 86 29.851979 83.782026 56.8170025 1.754478318 0.031997 66 49 SH6869 6869 snR56 5' 27.560144 86.759885 57.1600145 1.75709233 -0.147915 66 50 SH11786 11786 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5816 5829 267.7385 311.125803 289.4321515 2.461546773 0.098816 66 51 SH18859 18859 YNR053C_14_723108_721117_INTRON_811_1341 intron 30.018001 113.444389 30.018001 84.426388 57.2221945 1.757564509 0.027568 66 52 SH8642 8642 snR19 / U1 RNA 3' 28.178873 78.217626 53.1982495 1.725897342 -0.002308 66 53 SH7213 7213 snR64 3' 26.439081 70.307015 48.373048 1.684603453 -0.020224 66 54 SH16246 16246 YDR381W_4_1236547_1237993_INTRON_286_1051 3' exon 26.57741 100.619913 26.57741 75.042503 50.8099565 1.705948823 -0.072723 66 55 SH2394 2394 Phe4 tRNA 21 33 37.549082 90.938664 64.243873 1.807831715 0.141933 66 56 SH2191 2191 Met2 3' flank 27.751691 78.025744 52.8887175 1.723363036 -0.028631 66 57 SH15695 15695 YBR220C_2_663261_662457_INTRON_302_722 intron 31.486046 114.080493 31.486046 83.594447 57.5402465 1.759971718 0.106793 66 58 SH10032 10032 RUF6 RUF6 6 23 26.924903 79.840083 53.382493 1.727398852 -0.108633 66 59 SH16169 16169 YDR139C_4_733917_733611_INTRON_150_222 intron 38.251877 123.57589 38.251877 86.324013 62.287945 1.794404003 0.263534 66 60 SH13443 13443 MT COX1 intronic 27.761589 115.590289 27.761589 88.8287 58.2951445 1.765632383 -0.157787 66 61 SH11549 11549 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4631 4648 80.942676 125.76354 103.353108 2.014323541 0.216726 66 62 SH15444 15444 YBL087C_2_60732_59815_INTRON_43_546 exon/intron 28.108116 117.890933 28.108116 90.782817 59.4454665 1.77411874 -0.172713 66 63 SH8881 8881 LSR1 / U2 RNA U2 1046 1062 40.420708 97.038056 68.729382 1.837142439 0.069652 66 64 SH10875 10875 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1261 1274 1412.789041 1026.165776 1219.477409 3.086173759 0.345387 66 65 SH11112 11112 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2446 2464 30.449002 89.890955 60.1699785 1.779379856 -0.050374 66 66 SH7160 7160 snR63 3' 28.213919 81.744075 54.978997 1.740196813 -0.044118 66 67 SH5220 5220 snR30 5' 28.189545 68.425165 48.307355 1.684013259 0.12927 66 68 SH18274 18274 YML056C_13_164176_162194_INTRON_461_868 intron 30.700906 104.513054 30.700906 74.812148 52.756527 1.722276198 0.203772 66 69 SH21011 21011 YML124C spliced 26.619689 81.872802 54.2462455 1.734369685 -0.155285 66 70 SH14174 14174 MT COB intronic 26.882639 116.045161 26.882639 90.162522 58.5225805 1.767323468 -0.233328 66 71 SH15215 15215 MT COX3 cox3 26.903888 101.447376 26.903888 75.543488 51.223688 1.709470844 -0.055595 66 72 SH21581 21581 copy of SH5870 31.576771 100.188165 65.882468 1.81876986 -0.202829 66 73 SH20642 20642 YHR203C spliced 306.560787 392.653523 349.607155 2.543580312 -0.106389 66 74 SH20556 20556 YHL001W spliced 28.673474 83.90406 56.288767 1.750421736 -0.039787 66 75 SH3315 3315 Thr3 5' flank 27.821933 78.294011 53.057972 1.724750646 -0.027304 66 76 SH10831 10831 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1041 1058 12221.8159 8706.198146 10464.00702 4.019698022 -0.213956 66 77 SH838 838 Glu2 5' flank 26.638823 75.199391 50.919107 1.706880779 -0.070282 66 78 SH11301 11301 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3391 3409 30.463454 90.649515 60.5564845 1.782160655 -0.062738 66 79 SH14281 14281 MT VAR1 includes 5’ processing site VAR1 26.654162 106.442909 26.654162 80.788747 53.7214545 1.730147763 -0.139501 66 80 SH5178 5178 snR13 snR13 46 61 30.035629 73.276372 51.6560005 1.713120778 0.183261 66 81 SH8 8 Ala1 5' flank 26.896523 79.02191 52.9592165 1.723941551 -0.100307 66 82 SH18776 18776 YNL265C_14_145280_144279_INTRON_28_132 intron 27.840191 93.690919 27.840191 66.850728 47.3454595 1.675278336 0.127592 66 83 SH1858 1858 Leu9 tRNA-exon/intron 31 48 28.187211 75.968411 52.077811 1.716652721 0.027463 66 84 SH1044 1044 Gly3 5' flank 30.066064 80.345975 55.2060195 1.741986434 0.092954 66 85 SH1497 1497 Leu3 5' flank 29.0602 80.483222 54.771711 1.738556308 0.027131 66 86 SH1240 1240 Ile1 3' flank 30.675028 96.049419 63.3622235 1.801830409 -0.142986 66 87 SH12500 12500 MT_tRNA Pro tRNA 28.654966 103.554874 28.654966 75.899908 52.277437 1.718314287 0.059376 66 88 SH9651 9651 RUF4 RUF4 31 48 29.411522 82.605592 56.008557 1.748254384 0.023713 66 89 SH10449 10449 RUF8 RUF8 171 188 27.469707 84.865051 56.167379 1.749484158 -0.131999 66 90 SH21606 21606 copy of SH6882 27.136286 68.172462 47.654374 1.678102769 0.059486 66 91 SH12957 12957 MT COX1 COX1ai2 26.275524 94.600782 26.275524 69.325258 47.800391 1.679431449 -0.018681 66 92 SH12176 12176 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7766 7783 31.960849 86.199935 59.080392 1.771443368 0.079345 66 93 SH14853 14853 MT tRNA Ser2; tRNA Arg2 5' 25.055286 79.160522 25.055286 55.105236 40.080261 1.602930541 0.12714 66 94 SH11519 11519 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4481 4503 33.490363 73.661804 53.5760835 1.728970963 0.383145 66 95 SH10420 10420 RUF8 RUF8 26 47 26.845075 78.108437 52.476756 1.71996698 -0.092273 66 96 SH1877 1877 Leu9 3' flank 32.814955 90.594704 61.7048295 1.790319157 0.034441 66 97 SH3353 3353 Thr3 3' flank 30.305226 79.91001 55.107618 1.741211639 0.11333 66 98 SH2115 2115 Met1 5' flank 27.861611 81.272794 54.5672025 1.736931689 -0.062005 66 99 SH8916 8916 LSR1 / U2 RNA 3' 42.488983 102.301571 72.395277 1.859710234 0.002971 66 100 SH6187 6187 snR40 5' - 13 -4 13 60.639768 138.072916 99.356342 1.997195594 -0.25563 66 101 SH8731 8731 LSR1 / U2 RNA U2 296 313 27.157895 80.717902 53.9378985 1.731894022 -0.103346 66 102 SH2980 2980 Ser1 3' flank 30.238201 77.6676 53.9529005 1.732014797 0.137655 66 103 SH11356 11356 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3666 3679 1388.563456 1060.88805 1224.725753 3.08803885 0.270457 66 104 SH19513 19513 ACT1 288.58351 637.899169 463.2413395 2.665807309 -0.965054 67 2 SH1249 1249 Ile2 5' flank 23.602117 74.935832 49.2689745 1.692573523 -0.3 67 3 SH10856 10856 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1166 1179 51.041824 99.810506 75.426165 1.877522027 0.210813 67 4 SH16386 16386 YER007C-A_5_166884_166236_INTRON_12_114 3' exon 26.278132 103.736626 26.278132 78.458494 52.368313 1.719068584 -0.137248 67 5 SH13715 13715 MT tRNAGlu (and 5' processing site for COB) 3' 23.752109 90.073057 23.752109 67.320948 45.5365285 1.658359919 -0.180178 67 6 SH3662 3662 Val2 tRNA 51 65 26.907851 82.354309 54.63108 1.737439786 -0.140869 67 7 SH7678 7678 snoRNA cluster1 snR78/intergenic 29.309583 115.108358 29.309583 86.798775 58.054179 1.763833488 -0.047268 67 8 SH6247 6247 snR42 snR42 16 28 47.050109 98.052462 72.5512855 1.860645112 0.176412 67 9 SH15234 15234 MT COX3 3' 22.979166 86.742471 22.979166 64.763305 43.8712355 1.642179865 -0.202655 67 10 SH11306 11306 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3416 3429 44.29734 90.391339 67.3443395 1.828301098 0.291356 67 11 SH14428 14428 MT 21S rRNA 21S rRNA3 24.251658 83.332937 24.251658 60.081279 42.1664685 1.62496723 -0.025534 67 12 SH18471 18471 YMR143W_13_551927_552902_INTRON_25_568 intron 25.975146 96.343735 25.975146 71.368589 48.6718675 1.68727801 -0.068698 67 13 SH15579 15579 YBR084C-A_2_415219_414144_INTRON_3_508 intron 26.274614 100.484259 26.274614 75.209645 50.7421295 1.705368689 -0.096925 67 14 SH18249 18249 YML034W_13_209525_212155_INTRON_1921_2046 intron 29.338098 94.532816 29.338098 66.194718 47.766408 1.679122584 0.237979 67 15 SH14946 14946 MT tRNA Met 5' 25.958928 98.175034 25.958928 73.216106 49.587517 1.695372362 -0.094425 67 16 SH9184 9184 snR7 U5 RNA U5 191 208 26.469331 74.77767 50.6235005 1.704352172 -0.077178 67 17 SH4036 4036 SRP RNA SRP RNA 71 88 28.567216 67.693675 48.1304455 1.682419882 0.165213 67 18 SH14497 14497 MT 21S rRNA 21S rRNA3 362.899916 758.977107 362.899916 397.077191 379.9885535 2.579770514 0.09039 67 19 SH19347 19347 YPL249C-A_16_76239_75699_INTRON_17_254 intron 30.018422 120.401184 30.018422 91.382762 60.700592 1.783192927 -0.094898 67 20 SH17833 17833 YKR094C_11_618384_617630_INTRON_9_376 intron 31.68777 123.718336 31.68777 93.030566 62.359168 1.794900312 -0.05011 67 21 SH4252 4252 telomerase RNA telomerase 296 313 26.727749 80.461625 53.594687 1.729121739 -0.130244 67 22 SH184 184 Arg2 36-52 36 52 52.039741 118.083963 85.061852 1.929734834 -0.105173 67 23 SH20219 20219 YDR092W spliced 32.617475 94.509845 63.56366 1.803208896 -0.056632 67 24 SH8453 8453 snoRNA cluster 5 snR128 28.304255 107.132221 28.304255 79.827966 54.0661105 1.732925128 -0.014346 67 25 SH4085 4085 SRP RNA SRP RNA 316 328 41.72554 92.007596 66.866568 1.825209033 0.20559 67 26 SH1405 1405 Leu1 tRNA 96 113 38.730126 96.562598 67.646362 1.830244445 0.044631 67 27 SH15106 15106 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 24.407439 86.797626 24.407439 63.390187 43.898813 1.642452777 -0.068167 67 28 SH19448 19448 CYC1 26.824345 78.553965 52.689155 1.721721234 -0.099423 67 29 SH4028 4028 SRP RNA SRP RNA 31 48 26.862696 73.779864 50.32128 1.70175168 -0.035878 67 30 SH13488 13488 MT COX1 intronic 26.985467 107.008256 26.985467 81.022789 54.004128 1.732426958 -0.119122 67 31 SH74 74 Ala2 6-12 6 18 29.707068 87.207889 58.4574785 1.766840079 -0.036513 67 32 SH3094 3094 Ser3 3' flank 33.931993 86.473073 60.202533 1.779614764 0.154551 67 33 SH13848 13848 MT COB Cytbi2 26.536113 104.057277 26.536113 78.521164 52.5286385 1.720396144 -0.11936 67 34 SH637 637 Gln2 5' flank 33.230595 96.898987 65.064791 1.813346039 -0.09141 67 35 SH10542 10542 RUF8 RUF8 636 653 26.035595 76.888992 51.4622935 1.711489137 -0.135715 67 36 SH8107 8107 snoRNA cluster 3; 5' 32.720852 115.270735 32.720852 83.549883 58.1353675 1.764440422 0.159104 67 37 SH3755 3755 Val4 tRNA 1 13 94.33364 170.902393 132.6180165 2.122602528 -0.162451 67 38 SH14816 14816 "MT tRNAs (Lys, Arg1, Gly)" tRNA / intergenic 26.42877 100.998718 26.42877 75.569948 50.999359 1.707564718 -0.090245 67 39 SH5547 5547 snR33 snR33 21 35 32.954616 87.37059 60.162603 1.779326618 0.09946 67 40 SH16731 16731 YGL076C_7_365994_364333_INTRON_565_1032 exon/intron 37.367616 128.053507 37.367616 91.685891 64.5267535 1.809739815 0.121175 67 41 SH13631 13631 MT ATP6 ATP6 26.540122 95.763132 26.540122 70.22301 48.381566 1.684679921 -0.011731 67 42 SH16330 16330 YDR471W_4_1401759_1402553_INTRON_32_415 intron 29.322447 102.808399 29.322447 74.485952 51.9041995 1.715202497 0.12159 67 43 SH13682 13682 MT ORF 5 (hypothetical) 5' 28.302111 97.62321 28.302111 70.321099 49.311605 1.692949138 0.110718 67 44 SH398 398 Asn1 71-74 + 3' flank 71 3' flank 29.192426 68.675964 48.934195 1.689612448 0.193082 67 45 SH16003 16003 YDL137W_4_216158_217074_INTRON_1_332 intron 53.739303 153.347172 53.739303 100.607869 77.173586 1.887468681 0.240956 67 46 SH3531 3531 Tyr2 5' flank 26.130309 69.976569 48.053439 1.681724474 -0.038327 67 47 SH21722 21722 copy of SH11712 111.226966 113.901429 112.5641975 2.051400279 0.738563 67 48 SH4641 4641 snR3 snR3 121 137 27.918 80.012248 53.965124 1.732113179 -0.042544 67 49 SH9101 9101 snR14 / U4 RNA U4 121 140 27.86837 85.331583 56.5999765 1.752816251 -0.11034 67 50 SH18028 18028 YLR316C_12_766358_765266_INTRON_230_285 5' exon 32.274639 113.229923 32.274639 81.955284 57.1149615 1.756749888 0.170537 67 51 SH21804 21804 copy of SH15279 30.077282 83.403831 56.7405565 1.753893591 0.049059 67 52 SH9946 9946 RUF5-1 RUF5-1 536 550 34.792792 87.907744 61.350268 1.787816464 0.145604 67 53 SH19843 19843 Negative Control 30.73577 87.347464 59.041617 1.771158243 0.006576 67 54 SH19205 19205 YPL081W_16_404945_406039_INTRON_8_508 intron 30.870588 108.500777 30.870588 78.630189 54.7503885 1.738387205 0.164321 67 55 SH253 253 Arg3 3' flank 30.623699 93.485725 62.054712 1.792774764 -0.103376 67 56 SH3323 3323 Thr3 5' flank 27.996697 71.140287 49.568492 1.695205707 0.078709 67 57 SH19628 19628 RNA14 2.2 33.015953 78.843217 55.929585 1.747641597 0.260819 67 58 SH21760 21760 copy of SH13392 29.417836 108.142805 68.7803205 1.837464195 -0.418509 67 59 SH4182 4182 telomerase RNA 5' 28.468136 105.481729 66.9749325 1.825912285 -0.395964 67 60 SH6560 6560 snR47 5' 30.098342 80.805043 55.4516925 1.743914806 0.089271 67 61 SH6604 6604 snR47 3' 28.299068 86.195567 57.2473175 1.757755141 -0.09153 67 62 SH6838 6838 snR52 3' 28.070104 73.752327 50.9112155 1.706813466 0.049151 67 63 SH9377 9377 RUF1 RUF1 461 476 51.454717 114.289209 82.871963 1.918407626 -0.05186 67 64 SH15861 15861 YDL079C_4_314747_312950_INTRON_413_704 intron 27.187066 96.808323 27.187066 70.621257 48.9041615 1.689345817 0.029223 67 65 SH15466 15466 YBL087C_2_60732_59815_INTRON_43_546 intron 31.778709 100.991815 31.778709 70.213106 50.9959075 1.707535325 0.332307 67 66 SH17877 17877 YLR048W_12_242233_243350_INTRON_91_449 intron 26.677542 101.53585 26.677542 75.858308 51.267925 1.70984574 -0.075857 67 67 SH9339 9339 RUF1 RUF1 271 287 32.704491 88.169944 60.4372175 1.781304461 0.075173 67 68 SH19524 19524 ACT1 28.492499 79.204833 53.848666 1.731174949 0.005989 67 69 SH19808 19808 Negative Control 30.992839 81.651737 56.322288 1.750680289 0.122037 67 70 SH15667 15667 YBR189W_2_604466_605466_INTRON_8_420 3' exon 28.6535 102.052432 28.6535 74.398932 51.526216 1.71202825 0.079278 67 71 SH11497 11497 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4371 4387 40.180531 102.93753 71.5590305 1.854664448 -0.056986 67 72 SH4894 4894 snR8 3' 27.86169 72.46274 50.162215 1.700376705 0.051726 67 73 SH262 262 Arg4 5' flank 29.084914 69.436644 49.260779 1.692501275 0.175406 67 74 SH8709 8709 LSR1 / U2 RNA U2 186 203 28.348596 76.600314 52.474455 1.719947937 0.029926 67 75 SH10567 10567 RUF8 RUF8 761 777 51.059706 85.695289 68.3774975 1.834913202 0.519729 67 76 SH85 85 Ala2 61-73 61 73 551.973232 573.855488 562.91436 2.750442328 0.034951 67 77 SH6963 6963 snR58 3' 26.323422 75.826337 51.0748795 1.708207351 -0.101187 67 78 SH19683 19683 SIR1 2.4 45.14597 117.432455 81.2892125 1.910032916 -0.222735 67 79 SH6924 6924 snR58 5' - 1 -19 1 26.413436 73.595212 50.004324 1.69900756 -0.065954 67 80 SH8292 8292 snoRNA cluster4 intergenic 29.550729 118.073918 29.550729 89.523189 59.536959 1.774786648 -0.08411 67 81 SH19490 19490 YPT1 35.373638 94.374957 64.8742975 1.812072668 0.015603 67 82 SH6184 6184 snR40 5' 27.2961 97.886773 62.5914365 1.796514919 -0.328499 67 83 SH13395 13395 MT COX1 intronic 27.791254 100.47744 27.791254 73.686186 50.73872 1.705339507 0.030785 67 84 SH5696 5696 snR34 snR34 401 419 29.699035 72.083216 50.8911255 1.706642056 0.178464 67 85 SH7629 7629 snR189 3' 28.667541 74.495054 51.5812975 1.712492262 0.078908 67 86 SH11993 11993 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6851 6866 39.192559 100.088951 69.640755 1.842863471 -0.019585 67 87 SH7955 7955 snoRNA cluster 2 5' 26.015355 96.151772 26.015355 71.136417 48.575886 1.686420731 -0.062592 67 88 SH1851 1851 Leu9 5' flank - tRNA11 11 418.978705 713.98475 566.4817275 2.753185906 -0.668926 67 89 SH13532 13532 MT COX1 intronic 32.01312 112.841333 32.01312 81.828213 56.9206665 1.755269977 0.162048 67 90 SH19316 19316 YPL198W_16_173151_174701_INTRON_12_420 intron 27.188029 94.18261 27.188029 67.994581 47.591305 1.677527614 0.065662 67 91 SH16712 16712 YGL031C_7_438393_437938_INTRON_1_456 intron 31.049019 119.765704 31.049019 89.716685 60.382852 1.780913622 -0.021254 67 92 SH10015 10015 RUF6 5' 25.752277 64.324392 45.0383345 1.653582322 0.017219 67 93 SH2693 2693 Pro4 3' flank 38.196683 128.568487 83.382585 1.921075355 -0.551847 67 94 SH458 458 Asp1 3' flank 29.228006 98.388444 63.808225 1.804876664 -0.244881 67 95 SH13151 13151 MT COX1 intronic 29.120619 121.556514 29.120619 93.435895 61.278257 1.787306404 -0.16991 67 96 SH16618 16618 YFL039C_6_54695_53260_INTRON_11_318 intron 30.948841 117.254536 30.948841 87.305695 59.127268 1.771787813 0.016562 67 97 SH9767 9767 RUF4 RUF4 611 627 28.447141 81.921418 55.1842795 1.741815377 -0.030776 67 98 SH10648 10648 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 126 141 645.079124 595.186883 620.1330035 2.792484845 0.177768 67 99 SH19557 19557 CBP1 2.2 28.007528 70.990676 49.499102 1.69459732 0.081474 67 100 SH19070 19070 YOR293W_15_867094_867848_INTRON_53_489 intron 41.531422 137.979128 41.531422 97.447706 69.489564 1.841919587 0.083266 67 101 SH16665 16665 YFR032C-A_6_223758_223245_INTRON_1_331 intron 27.26615 109.338279 27.26615 83.072129 55.1691395 1.74169621 -0.124634 67 102 SH19324 19324 YPL218W_16_138697_139408_INTRON_29_167 exon/intron 29.049366 99.620763 29.049366 71.571397 50.3103815 1.701657611 0.143924 67 103 SH12839 12839 MT COX1 COX1ai1 31.831554 119.783266 31.831554 88.951712 60.391633 1.780976773 0.025308 67 104 SH9336 9336 RUF1 RUF1 256 273 262.597504 554.391464 408.494484 2.611186197 -0.859534 68 2 SH3349 3349 Thr3 3' flank 23.874812 61.757875 42.8163435 1.631609576 -0.082897 68 3 SH2130 2130 Met1 tRNA 36 52 43.337363 100.188886 71.7631245 1.855901339 0.062242 68 4 SH7768 7768 snoRNA cluster1 snR76 33.645929 127.723372 33.645929 95.077443 64.361686 1.808627412 -0.042257 68 5 SH12388 12388 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.735515 111.537559 36.735515 75.802044 56.2687795 1.750267495 0.464551 68 6 SH10755 10755 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 661 678 105.703076 156.607686 131.155381 2.117786113 0.119633 68 7 SH17121 17121 YHR010W_8_126513_127484_INTRON_32_592 intron 24.086528 90.488404 24.086528 67.401876 45.744202 1.660336056 -0.155265 68 8 SH4130 4130 SRP RNA SRP RNA 541 555 125.473967 166.147922 145.8109445 2.163790123 0.218363 68 9 SH374 374 Asn1 5' flank 24.621008 73.915411 49.2682095 1.692566779 -0.205452 68 10 SH986 986 Gly2 5' flank 23.882897 87.540237 55.711567 1.745945374 -0.426709 68 11 SH21910 21910 copy of SH19563 47.153664 118.399181 82.7764225 1.917906653 -0.200208 68 12 SH5542 5542 snR33 5' - 13 -4 13 36.590353 107.852472 72.2214125 1.858665978 -0.2302 68 13 SH7707 7707 snoRNA cluster1 snR77 103.731222 255.829427 103.731222 153.098205 128.4147135 2.108614787 0.137883 68 14 SH13732 13732 MT COB Exon1 29.097526 164.437174 29.097526 136.339648 82.718587 1.917603107 -0.902169 68 15 SH1313 1313 Ile3 5' flank 26.04349 63.3883 44.715895 1.650461928 0.053135 68 16 SH16727 16727 YGL033W_7_435621_436347_INTRON_56_125 3' exon 26.627685 113.263966 26.627685 87.636281 57.131983 1.756879298 -0.22283 68 17 SH9157 9157 snR7 U5 RNA U5 56 75 26.490128 65.391326 45.940727 1.662197864 0.053303 68 18 SH18488 18488 YMR194W_13_651144_651909_INTRON_17_479 intron 35.248445 141.199173 35.248445 106.950728 71.0995865 1.851867075 -0.243623 68 19 SH7877 7877 snoRNA cluster1 snR73 26.026237 94.744003 26.026237 69.717766 47.8720015 1.680081585 -0.042457 68 20 SH15849 15849 YDL075W_4_322225_322987_INTRON_58_478 intron 28.136549 113.088705 28.136549 85.952156 57.0443525 1.756212655 -0.09955 68 21 SH20546 20546 YGR214W spliced 32.155176 85.91399 59.034583 1.7711065 0.092599 68 22 SH12411 12411 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.2091 93.485018 27.2091 67.275918 47.242509 1.674332954 0.07735 68 23 SH5378 5378 snR31 5' 26.659776 66.268281 46.4640285 1.667116861 0.052553 68 24 SH12528 12528 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.331256 108.869329 28.331256 81.538073 54.9346645 1.739846477 -0.033772 68 25 SH14425 14425 MT 21S rRNA 21S rRNA3 23.101855 92.293331 23.101855 70.191476 46.6466655 1.668820604 -0.274496 68 26 SH11732 11732 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5546 5561 2016.000336 1049.812315 1532.906326 3.185515616 0.779067 68 27 SH19858 19858 Negative Control 29.393799 76.931613 53.162706 1.725607079 0.093824 68 28 SH8854 8854 LSR1 / U2 RNA U2 911 925 1534.045162 1354.788221 1444.416692 3.159692498 0.019233 68 29 SH987 987 Gly2 5' flank 27.894178 79.021031 53.4576045 1.728009494 -0.031672 68 30 SH20338 20338 YER074W-A spliced 34.603605 91.023185 62.813395 1.798052267 0.070223 68 31 SH20312 20312 YER007C-A spliced 25.941421 74.927742 50.4345815 1.702728421 -0.117899 68 32 SH19443 19443 YPR187W_16_911252_911795_INTRON_21_96 intron/exon 35.631627 130.282838 35.631627 95.651211 65.641419 1.817177961 -0.005463 68 33 SH21141 21141 YNL162W spliced 29.21248 83.662042 56.437261 1.751565929 -0.001805 68 34 SH14838 14838 MT tRNA Asp 5' / tRNA Asp 29.160882 117.790262 29.160882 89.62938 59.395131 1.773750845 -0.103719 68 35 SH4184 4184 telomerase RNA 5' 28.697075 74.187294 51.4421845 1.711319403 0.084993 68 36 SH20573 20573 YHR012W spliced 32.82671 87.691269 60.2589895 1.780021845 0.088587 68 37 SH17319 17319 YIL004C_9_348502_347943_INTRON_12_142 5' exon 30.621223 119.3713 30.621223 89.750077 60.18565 1.779492955 -0.040398 68 38 SH9225 9225 snR6 / U6 RNA 5' - 12 -4 12 28.549458 83.488894 56.019176 1.748336716 -0.042988 68 39 SH10406 10406 RUF8 5' 30.719614 84.908931 57.8142725 1.762035065 0.049674 68 40 SH18602 18602 YNL069C_14_494998_493953_INTRON_29_477 intron 26.044148 101.609368 26.044148 76.56522 51.304684 1.710157017 -0.131033 68 41 SH12408 12408 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.780535 135.904152 32.780535 104.123617 68.452076 1.835386624 -0.24909 68 42 SH10022 10022 RUF6 5' 30.867318 86.369959 58.6186385 1.768035727 0.029702 68 43 SH7021 7021 snR60 3' 28.747013 77.20015 52.9735815 1.724059336 0.048412 68 44 SH12167 12167 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7721 7738 37.852755 101.676013 69.764384 1.843633764 -0.080653 68 45 SH11758 11758 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5676 5689 28473.0245 15520.64373 21996.83411 4.34236018 -0.02403 68 46 SH12031 12031 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS/3'flank 7041 7063 30.799079 74.604139 52.701609 1.721823875 0.212575 68 47 SH721 721 Gln3 3' flank 35.310196 83.648493 59.4793445 1.774366174 0.259073 68 48 SH10854 10854 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1156 1171 79.152268 131.278129 105.2151985 2.022078479 0.114906 68 49 SH524 524 Cys1 5' flank 32.624053 79.294349 55.959201 1.747871505 0.23601 68 50 SH14663 14663 MT 21S rRNA 21S rRNA4 30.308642 124.537401 30.308642 95.228759 62.7687005 1.797743138 -0.145794 68 51 SH13973 13973 MT COB Cytbi3 26.988163 93.302444 26.988163 67.314281 47.151222 1.673492953 0.061102 68 52 SH17446 17446 YIL148W_9_68708_69528_INTRON_9_442 5' exon 34.905648 136.189042 34.905648 102.283394 68.594521 1.836289428 -0.159627 68 53 SH8511 8511 snR19 / U1 RNA U1 51 72 26.224404 79.878775 53.0515895 1.724698401 -0.158787 68 54 SH4743 4743 snR4 3' 28.55585 89.406359 58.9811045 1.770712901 -0.127926 68 55 SH6437 6437 snR45 snR45 31 50 30.791233 77.003166 53.8971995 1.7315662 0.180406 68 56 SH20106 20106 YDL061C spliced 30.646121 91.652383 61.149252 1.786391149 -0.071757 68 57 SH18343 18343 YML124C_13_23684_22049_INTRON_26_323 intron 28.037875 101.277068 28.037875 74.239193 51.138534 1.708748274 0.040507 68 58 SH12087 12087 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7321 7338 36.424834 113.182272 74.803553 1.873922226 -0.333421 68 59 SH7111 7111 snR63 snR63 61 78 29.736145 75.318588 52.5273665 1.720385628 0.136858 68 60 SH9667 9667 RUF4 RUF4 111 127 30.142346 80.172151 55.1572485 1.741602593 0.099897 68 61 SH18775 18775 YNL265C_14_145280_144279_INTRON_28_132 exon/intron 28.291712 104.38679 28.291712 77.095078 52.693395 1.721756181 0.019695 68 62 SH7174 7174 snR64 5' 25.739016 73.126738 49.432877 1.694015887 -0.109637 68 63 SH20594 20594 YHR039C-A spliced 35.883767 89.170437 62.527102 1.796068301 0.143033 68 64 SH5496 5496 snR32 snR32 141 160 26.722227 74.607745 50.664986 1.704707927 -0.056683 68 65 SH11191 11191 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2841 2856 46.529054 103.763969 75.1465115 1.875908824 0.052033 68 66 SH9469 9469 RUF2 RUF2 186 203 28.328027 87.371277 57.849652 1.762300751 -0.103167 68 67 SH5325 5325 snR30 snR30 476 488 68.064623 117.639885 92.852254 1.967792451 0.162148 68 68 SH11511 11511 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4441 4458 4525.227574 2971.715981 3748.471778 3.573854245 0.193803 68 69 SH7872 7872 snoRNA cluster1 snR73 78.958088 235.557437 78.958088 157.599349 118.2787185 2.07290661 -0.218169 68 70 SH19298 19298 YPL198W_16_173151_174701_INTRON_12_420 5' exon 30.204606 119.6905 30.204606 90.485894 60.34525 1.780643091 -0.071364 68 71 SH5272 5272 snR30 snR30 211 225 32.605865 83.478201 58.042033 1.763742616 0.15572 68 72 SH7874 7874 snoRNA cluster1 snR73 26.43969 95.750583 26.43969 70.310893 48.3752915 1.684623595 -0.020233 68 73 SH15377 15377 YBL027W_2_168385_169338_INTRON_3_386 intron 26.731659 97.845581 26.731659 72.113922 49.4227905 1.693927263 -0.02338 68 74 SH12697 12697 MT ORF 8 (hypothetical) ORF8 28.431382 114.247866 28.431382 86.816484 57.623933 1.760602897 -0.089927 68 75 SH15342 15342 YAL030W_1_87288_87754_INTRON_103_215 3' exon 61.050836 190.073004 61.050836 130.022168 95.536502 1.980169336 -0.135225 68 76 SH12533 12533 MT_ORF6 + ORF7 (hypothetical) ORF6/7 26.603098 99.293932 26.603098 73.690834 50.146966 1.700244662 -0.053421 68 77 SH15074 15074 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.388072 117.418938 26.388072 92.030866 59.209469 1.772391166 -0.28885 68 78 SH7272 7272 snR65 3' 26.26199 64.362803 45.3123965 1.656217032 0.053247 68 79 SH12747 12747 MT COX1 COX1ai1 48.103467 150.642025 48.103467 103.538558 75.8210125 1.87978958 0.084966 68 80 SH5992 5992 snR36 3' 25.117087 66.362426 45.7397565 1.660293848 -0.061161 68 81 SH3613 3613 Val1 tRNA 61 73 105.105844 213.836602 159.471223 2.202682325 -0.420416 68 82 SH19675 19675 SIR1 2.4 40.54882 99.022318 69.785569 1.843765624 0.030504 68 83 SH12007 12007 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6921 6943 24.807942 72.459793 48.6338675 1.686938807 -0.1718 68 84 SH2272 2272 Phe2 5' flank 26.67912 72.043817 49.3614685 1.693388071 -0.026235 68 85 SH3710 3710 Val3 tRNA 31 45 35.75657 101.688425 68.7224975 1.837098934 -0.127777 68 86 SH17151 17151 YHR012W_8_129473_130440_INTRON_49_167 intron 29.546194 116.747639 29.546194 88.201445 58.8738195 1.769922212 -0.061305 68 87 SH20420 20420 YGL031C spliced 31.921777 92.484847 62.203312 1.793813509 -0.031161 68 88 SH17429 17429 YIL133C_9_99416_98527_INTRON_32_321 intron 28.410223 104.144992 28.410223 76.734769 52.572496 1.720758597 0.032262 68 89 SH9796 9796 RUF4 RUF4 756 772 26.868344 71.605601 49.2369725 1.692291341 -0.00677 68 90 SH21569 21569 copy of SH5384 33.751284 92.990204 63.370744 1.801888806 0.005491 68 91 SH3113 3113 Ser4 5' flank 30.837883 126.591983 78.714933 1.89605713 -0.701369 68 92 SH16159 16159 YDR129C_4_715372_713333_INTRON_22_132 intron 27.787745 85.885256 27.787745 59.097511 43.442628 1.637916089 0.245535 68 93 SH16797 16797 YGL137W_7_249872_252741_INTRON_19_218 5' exon 33.624193 131.88596 33.624193 99.261767 66.44298 1.822449103 -0.130267 68 94 SH18817 18817 YNL302C_14_62942_61957_INTRON_21_571 intron 29.157465 113.2123 29.157465 85.054835 57.10615 1.756682882 -0.022834 68 95 SH6615 6615 snR48 5' 29.243199 84.861957 57.052578 1.756275273 -0.015393 68 96 SH7001 7001 snR60 snR60 86 101 31.209807 86.993147 59.101477 1.771598334 0.033349 68 97 SH3993 3993 RNase MRP 3' 28.738286 74.23159 51.484938 1.711680194 0.0871 68 98 SH19573 19573 AEP2/ATP13 0.6 32.790302 99.745092 66.267697 1.821301878 -0.161596 68 99 SH6274 6274 snR42 snR42 151 173 26.57524 66.131129 46.3531845 1.666079576 0.048425 68 100 SH10171 10171 RUF6 RUF6 701 713 29.117474 94.683237 61.9003555 1.791693143 -0.19057 68 101 SH14833 14833 MT tRNA Asp 5' 25.262886 97.483518 25.262886 73.220632 49.241759 1.692333558 -0.146826 68 102 SH2291 2291 Phe2 tRNA-intron/exon 51 67 246.700816 399.20078 322.950798 2.509136362 -0.408929 68 103 SH21185 21185 YOL047C spliced 27.882031 86.468519 57.175275 1.757208262 -0.122668 68 104 SH9530 9530 RUF3 RUF3 36 50 282.392372 563.376541 422.8844565 2.626221723 -0.792793 69 2 SH16649 16649 YFR031C-A_6_221405_220494_INTRON_5_151 intron 31.06338 112.549358 31.06338 82.485978 56.774679 1.754154687 0.109355 69 3 SH4711 4711 snR4 snR4 91 108 24.532543 65.851374 45.1919585 1.655061163 -0.09732 69 4 SH19127 19127 YPL075W_16_412249_415357_INTRON_9_759 intron 28.262743 112.049308 28.262743 84.786565 56.524654 1.752237913 -0.077448 69 5 SH11906 11906 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6416 6434 63.869284 96.865094 80.367189 1.905078778 0.472764 69 6 SH6702 6702 snR49 snR49 36 52 47.218566 119.838387 83.5284765 1.92183456 -0.22305 69 7 SH1212 1212 Ile1 tRNA 21 33 70.257367 132.230087 101.243727 2.005368124 -0.023269 69 8 SH21925 21925 copy of SH20400 28.396219 76.74462 52.5704195 1.720741443 0.031204 69 9 SH4826 4826 snR8 5' 30.780118 91.641723 61.2109205 1.786828911 -0.065738 69 10 SH14582 14582 MT 21S rRNA intronic 25.690959 103.346837 25.690959 78.655878 52.1734185 1.717449293 -0.183178 69 11 SH1508 1508 Leu3 tRNA 11 23 48.739878 113.325441 81.0326595 1.908660093 -0.083401 69 12 SH9092 9092 snR14 / U4 RNA U4 76 92 32.149705 88.755826 60.4527655 1.781416173 0.042029 69 13 SH8165 8165 snoRNA cluster 3; snR70 35.249251 126.082565 35.249251 91.833314 63.5412825 1.803055976 0.06803 69 14 SH17747 17747 YKL157W_11_154993_158183_INTRON_282_664 intron 32.733749 150.737148 32.733749 119.003399 75.868574 1.880061921 -0.524775 69 15 SH7587 7587 snR189 snR189 6 25 31.959274 107.402675 69.6809745 1.843114216 -0.333739 69 16 SH10255 10255 RUF6 3' 28.159582 71.195299 49.6774405 1.696159212 0.08914 69 17 SH2075 2075 Lys4 tRNA-intron 41 58 28.131869 80.428931 54.2804 1.734643039 -0.033366 69 18 SH5564 5564 snR33 snR33 106 122 28.102434 72.280444 50.191439 1.700629647 0.070712 69 19 SH2895 2895 Pro8 5' flank - tRNA10 10 90.896293 170.655233 130.775763 2.116527263 -0.202092 69 20 SH11318 11318 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3476 3496 1098.692798 869.745458 984.219128 2.993091801 0.273918 69 21 SH3889 3889 RNaseP 3' 26.548202 79.530345 53.0392735 1.724597567 -0.131288 69 22 SH16944 16944 YGR027C_7_534779_534126_INTRON_1_312 intron 23.74471 90.740265 23.74471 67.995555 45.8701325 1.661529995 -0.190893 69 23 SH3290 3290 Thr2 tRNA 51 66 33.426276 88.021039 60.7236575 1.783357922 0.107006 69 24 SH290 290 Arg4 46-58 46 58 38.797177 93.617027 66.207102 1.820904578 0.109953 69 25 SH12906 12906 MT COX1 COX1ai2 24.167567 99.948448 24.167567 76.780881 50.474224 1.703069651 -0.277747 69 26 SH16838 16838 YGL178W_7_167356_170575_INTRON_4_643 intron 38.975713 138.386026 38.975713 100.410313 69.693013 1.843189241 -0.030762 69 27 SH13758 13758 MT COB intronic 25.483388 94.904545 25.483388 70.421157 47.9522725 1.680809194 -0.092682 69 28 SH11720 11720 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5486 5499 113.953581 124.924745 119.439163 2.077146751 0.600623 69 29 SH18386 18386 YMR116C_13_500687_499455_INTRON_538_810 intron 28.368606 98.38224 28.368606 71.013634 49.69112 1.696278786 0.105833 69 30 SH8583 8583 snR19 / U1 RNA U1 411 426 30.501201 89.264053 59.882627 1.777300844 -0.037255 69 31 SH11243 11243 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3101 3118 5913.936925 5710.088294 5812.01261 3.764326548 -0.492147 69 32 SH10321 10321 RUF7 RUF7 216 233 26.768464 82.038481 54.4034725 1.735626621 -0.146808 69 33 SH7999 7999 snoRNA cluster 2 intergenic 27.310849 108.068014 27.310849 81.757165 54.534007 1.73666741 -0.105573 69 34 SH9875 9875 RUF5-1 RUF5-1 181 197 29.606726 66.372619 47.9896725 1.681147786 0.252956 69 35 SH19810 19810 Negative Control 29.040352 89.28278 59.161566 1.772039661 -0.103268 69 36 SH618 618 Gln1 3' flank 32.905618 90.638996 61.772307 1.790793821 0.035807 69 37 SH13591 13591 MT ATP8/AAP1 5' 28.138377 88.152655 28.138377 61.014278 44.5763275 1.649104285 0.236536 69 38 SH7750 7750 snoRNA cluster1 intergenic/snR76 58.959469 180.625 58.959469 122.665531 90.8125 1.958145632 -0.059605 69 39 SH8397 8397 snoRNA cluster 5 snR190 28.313119 104.101759 28.313119 76.78864 52.5508795 1.720579989 0.025108 69 40 SH7088 7088 snR63 5' 27.868062 65.035846 46.451954 1.667003987 0.15593 69 41 SH20418 20418 YGL030W spliced 31.80517 94.142844 62.974007 1.799161328 -0.070287 69 42 SH12616 12616 MT_15S MT_15S 25.412617 94.079517 25.412617 69.6669 47.5397585 1.677056971 -0.087705 69 43 SH21727 21727 copy of SH11922 31.384647 74.987487 53.186067 1.725797876 0.24293 69 44 SH9046 9046 snR17a / U3a 3' 26.063178 73.709023 49.8861005 1.697979557 -0.093145 69 45 SH6842 6842 snR52 3' 35.587304 99.976351 67.7818275 1.831113274 -0.096658 69 46 SH13553 13553 MT COX1 intronic 28.936025 107.764901 28.936025 79.828876 54.3824505 1.735458773 0.027236 69 47 SH6084 6084 snR37 snR37 336 355 26.599075 74.159149 50.379112 1.702250508 -0.059791 69 48 SH14593 14593 MT 21S rRNA Sce1 endonuc 33.114097 129.738127 33.114097 97.62403 65.3690635 1.815372263 -0.10955 69 49 SH15015 15015 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 26.110413 103.193677 26.110413 78.083264 52.0968385 1.716811369 -0.144978 69 50 SH3 3 Ala1 5' flank 30.533363 79.633063 55.083213 1.741019265 0.130937 69 51 SH19126 19126 YPL075W_16_412249_415357_INTRON_9_759 exon/intron 30.65121 112.818183 30.65121 83.166973 56.9090915 1.755181653 0.078758 69 52 SH1514 1514 Leu3 tRNA-intron 41 57 30.842149 85.386562 58.1143555 1.764283426 0.046325 69 53 SH8948 8948 snR17a / U3a U3a 26 42 28.748488 82.972428 55.860458 1.747104492 -0.023685 69 54 SH9378 9378 RUF1 RUF1 466 481 40.252273 88.473868 64.3630705 1.808636754 0.256795 69 55 SH1314 1314 Ile3 5' flank 26.529203 79.538038 53.0336205 1.724551277 -0.132734 69 56 SH14245 14245 MT tRNA Ser tRNA 28.614829 107.652748 28.614829 80.037919 54.326374 1.735010719 0.003586 69 57 SH15883 15883 YDL082W_4_308423_309387_INTRON_5_369 intron 25.923473 94.968706 25.923473 70.045233 47.984353 1.681099643 -0.054572 69 58 SH17440 17440 YIL133C_9_99416_98527_INTRON_32_321 intron 25.441202 90.67062 25.441202 66.229418 45.83531 1.661200173 -0.035157 69 59 SH18571 18571 YNL012W_14_609682_611661_INTRON_106_189 intron/exon 29.653722 129.097893 29.653722 100.444171 65.0489465 1.813240267 -0.261717 69 60 SH819 819 Glu1 3' flank 36.676839 155.103168 95.8900035 1.981773334 -0.962589 69 61 SH6155 6155 snR39B 3' 28.031094 68.431678 48.231386 1.683329742 0.118323 69 62 SH13782 13782 MT COB intronic 25.390567 96.536294 25.390567 72.145727 48.768147 1.688136254 -0.122926 69 63 SH15512 15512 YBR048W_2_332790_333771_INTRON_46_556 intron 42.039832 135.035896 42.039832 93.996064 68.017948 1.832623526 0.167662 69 64 SH12807 12807 MT COX1 COX1ai1 24.349688 88.84457 24.349688 65.494882 44.922285 1.652461839 -0.105788 69 65 SH3487 3487 Tyr1 5' flank 24.500649 72.645135 48.572892 1.686393962 -0.198255 69 66 SH10781 10781 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 791 809 26.949729 78.592839 52.771284 1.722397661 -0.091132 69 67 SH3521 3521 Tyr1 3' flank 29.750227 85.657205 57.703716 1.761203782 -0.006815 69 68 SH898 898 Glu3 tRNA 1 17 1497.00842 1084.744001 1290.876211 3.110884597 0.334924 69 69 SH1072 1072 Gly3 3' flank 27.915033 81.797425 54.856229 1.739225949 -0.064838 69 70 SH754 754 Gln4 tRNA 41 53 34.471755 97.003674 65.7377145 1.817814601 -0.06226 69 71 SH6219 6219 snR40 3' 28.058639 89.615597 58.837118 1.769651392 -0.155052 69 72 SH19528 19528 CBP1 1.2 37.828188 95.246096 66.537142 1.823064142 0.053559 69 73 SH3831 3831 RNaseP RNaseP 121 135 30.273808 94.756778 62.515293 1.795986271 -0.139647 69 74 SH16138 16138 YDR092W_4_629869_630598_INTRON_31_298 exon/intron 28.779837 118.090981 28.779837 90.311144 59.5454905 1.774848877 -0.133046 69 75 SH1831 1831 Leu8 3' flank 27.841514 76.69805 52.269782 1.718250689 -0.005359 69 76 SH10224 10224 RUF6 RUF6 966 980 47.110206 102.942623 75.0264145 1.875214192 0.078791 69 77 SH12663 12663 MT_15S MT_15S 31.334853 123.214337 31.334853 92.879484 62.1071685 1.79314173 -0.062585 69 78 SH15471 15471 YBL087C_2_60732_59815_INTRON_43_546 3' exon 33.59248 126.287859 33.59248 93.695379 63.6439295 1.803756986 -0.013881 69 79 SH1192 1192 Ile1 5' flank 28.502536 87.815106 58.158821 1.764615594 -0.102647 69 80 SH18691 18691 YNL112W_14_413636_416278_INTRON_1274_2275 intron 25.761055 109.307821 25.761055 84.546766 55.1539105 1.74157631 -0.249239 69 81 SH5805 5805 snR35 snR35 211 228 39.954117 102.757874 71.3559955 1.853430469 -0.058032 69 82 SH19790 19790 Negative Control 28.772098 84.709466 56.740782 1.753895317 -0.042883 69 83 SH10579 10579 RUF8 RUF8 821 838 28.619827 80.730202 54.6750145 1.737788907 -0.004708 69 84 SH20479 20479 YGL226C-A spliced 27.916449 78.384447 53.150448 1.72550693 -0.02207 69 85 SH6254 6254 snR42 snR42 51 67 27.220209 74.546568 50.8833885 1.706576025 -0.020337 69 86 SH10112 10112 RUF6 RUF6 406 423 24.864486 82.204622 53.534554 1.728634189 -0.288495 69 87 SH6779 6779 snR50 snR50 71 85 46.942021 109.986912 78.4644665 1.894673026 -0.057395 69 88 SH1802 1802 Leu8 tRNA-exon/intron 36 51 30.226756 79.737703 54.9822295 1.740222346 0.110606 69 89 SH5577 5577 snR33 166-183 + 3' 171 26.57184 80.747897 53.6598685 1.729649604 -0.144823 69 90 SH19360 19360 YPR028W_16_623522_624197_INTRON_52_184 5' exon 31.238972 164.991963 31.238972 134.752991 82.9959815 1.919057065 -0.819485 69 91 SH3150 3150 Ser4 3' flank 32.921204 115.228408 74.074806 1.869670523 -0.453586 69 92 SH20156 20156 YDL125C spliced 27.53496 80.863442 54.199201 1.733992884 -0.07917 69 93 SH4749 4749 snR5 5' 404.382324 283.144735 343.7635295 2.5362598 0.773375 69 94 SH6340 6340 snR43 5' 27.724005 85.455789 56.589897 1.752738903 -0.121582 69 95 SH20908 20908 YLR316C spliced 26.877886 82.482673 54.6802795 1.737830726 -0.144528 69 96 SH5486 5486 snR32 snR32 91 108 29.065285 83.339207 56.202246 1.749753672 -0.007452 69 97 SH21348 21348 YPR132W spliced 31.078563 85.031033 58.054798 1.763838118 0.063 69 98 SH18320 18320 YML085C_13_99400_97941_INTRON_26_141 intron 33.262715 107.494798 33.262715 75.232083 54.247399 1.73437892 0.343312 69 99 SH870 870 Glu2 3' flank 29.321802 75.842413 52.5821075 1.720837989 0.10348 69 100 SH12189 12189 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7831 7849 31.938973 85.85586 58.8974165 1.770096245 0.084616 69 101 SH9151 9151 snR7 U5 RNA U5 26 38 97.977341 142.007322 119.9923315 2.079153492 0.205565 69 102 SH18066 18066 YLR344W_12_819312_820142_INTRON_20_466 intron 37.131396 130.820193 37.131396 94.688797 65.9100965 1.818951947 0.050312 69 103 SH4855 4855 snR8 snR8 56 72 110.773431 153.983816 132.3786235 2.121817861 0.202421 69 104 SH4969 4969 snR9 3' 193.19309 421.054512 307.123801 2.487313474 -0.804187 70 2 SH11303 11303 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3401 3418 273.990829 314.210215 294.100522 2.468495795 0.11195 70 3 SH18252 18252 YML034W_13_209525_212155_INTRON_1921_2046 intron 25.345986 92.981021 25.345986 68.635035 46.9905105 1.672010163 -0.078423 70 4 SH2325 2325 Phe3 5' flank 29.039185 92.771916 60.9055505 1.784656873 -0.162626 70 5 SH8943 8943 snR17a / U3a U3a 1 15 26.782202 76.037636 51.409919 1.71104692 -0.070582 70 6 SH3090 3090 Ser3 3' flank 31.026373 95.24237 63.1343715 1.800265861 -0.115056 70 7 SH7089 7089 snR63 5' 27.695766 74.16185 50.928808 1.706963512 0.017982 70 8 SH8200 8200 snoRNA cluster 3; intergenic 39.410759 143.341131 39.410759 104.930372 72.1705655 1.858360108 -0.112451 70 9 SH14014 14014 MT COB intron/exon4 29.073498 119.564263 29.073498 91.490765 60.2821315 1.7801886 -0.139533 70 10 SH19344 19344 YPL249C-A_16_76239_75699_INTRON_17_254 5' exon 1024.815185 1828.694375 1024.815185 804.87919 914.8471875 2.961348557 0.304449 70 11 SH13456 13456 MT COX1 intronic 25.590876 108.660395 25.590876 84.069519 54.8301975 1.73901981 -0.25606 70 12 SH503 503 Asp2 3' flank 27.148765 79.166464 53.1576145 1.725565483 -0.084549 70 13 SH2543 2543 Pro2 5' flank 25.408771 71.342236 48.3755035 1.684625498 -0.110799 70 14 SH14129 14129 MT COB intronic 26.049653 91.629039 26.049653 66.579386 46.3145195 1.665717163 0.003664 70 15 SH5885 5885 snR35 3' 33.278512 113.512753 73.3956325 1.865670217 -0.413763 70 16 SH7572 7572 snR189 5' 25.074648 62.742609 43.9086285 1.642549872 -0.007322 70 17 SH7479 7479 snR71 snR71 11 27 52.584215 108.267624 80.4259195 1.905396035 0.075366 70 18 SH14654 14654 MT 21S rRNA 21S rRNA4 27.603939 97.958424 27.603939 71.354485 49.479212 1.694422774 0.048617 70 19 SH10433 10433 RUF8 RUF8 91 108 30.568243 71.135178 50.8517105 1.706305566 0.246072 70 20 SH548 548 Cys1 tRNA 41 56 33.692867 76.048131 54.870499 1.73933891 0.34382 70 21 SH10479 10479 RUF8 RUF8 321 338 26.90529 88.5182 57.711745 1.761264206 -0.213313 70 22 SH18145 18145 YLR406C_12_931752_931062_INTRON_58_406 intron 28.503151 106.58511 28.503151 79.081959 53.792555 1.730722173 0.008248 70 23 SH15910 15910 YDL083C_4_307788_306925_INTRON_25_456 intron 24.932403 91.122245 24.932403 67.189842 46.0611225 1.663334517 -0.087548 70 24 SH11777 11777 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5771 5786 51.817679 111.102151 81.459915 1.910943953 0.010763 70 25 SH1108 1108 Gly4 tRNA 16 31 28.325848 83.901021 56.1134345 1.749066851 -0.062734 70 26 SH3721 3721 Val3 3' flank 27.071273 64.454125 45.762699 1.66051163 0.108687 70 27 SH14571 14571 MT 21S rRNA 21S rRNA3 30.137039 119.138219 30.137039 90.00118 60.0691095 1.778651194 -0.066053 70 28 SH11670 11670 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5236 5253 4444.590176 2712.765513 3578.677845 3.553722605 0.314788 70 29 SH13404 13404 MT COX1 intronic 30.607423 120.003526 30.607423 90.396103 60.501763 1.78176803 -0.052097 70 30 SH15046 15046 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.908764 91.446531 25.908764 66.537767 46.2232655 1.664860623 -0.005837 70 31 SH160 160 Arg2 5' flank 35.083175 96.272703 65.677939 1.817419516 -0.031873 70 32 SH599 599 Gln1 tRNA 36 50 64.4461 125.307635 94.8768675 1.977160337 -0.011592 70 33 SH16499 16499 YER117W_5_396765_397649_INTRON_43_513 intron 29.685286 117.490633 29.685286 88.805347 59.2453165 1.772654024 -0.065575 70 34 SH6617 6617 snR48 5' 29.6667 72.101953 50.8843265 1.706584031 0.176151 70 35 SH13832 13832 MT COB Cytbi2 26.820545 97.842225 26.820545 72.02168 49.4211125 1.693912517 -0.015759 70 36 SH21116 21116 YNL096C spliced 30.647493 88.792711 59.720102 1.776120541 -0.02266 70 37 SH3815 3815 RNaseP RNaseP 41 53 30.253787 84.574696 57.4142415 1.759019632 0.035325 70 38 SH17540 17540 YJL177W_10_90783_91654_INTRON_310_626 intron 39.450227 141.437037 39.450227 102.98681 71.2185185 1.852592935 -0.073065 70 39 SH20784 20784 YKL006W spliced 25.852062 73.95733 49.904696 1.698141414 -0.112035 70 40 SH9458 9458 RUF2 RUF2 131 150 27.286333 82.608777 54.947555 1.739948372 -0.11764 70 41 SH21330 21330 YPR043W spliced 41.351087 104.092639 72.721863 1.861664996 -0.055499 70 42 SH11952 11952 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6646 6661 10609.61058 5976.600221 8293.105401 3.918717185 0.196835 70 43 SH16407 16407 YER056C-A_5_270183_269421_INTRON_38_434 intron 27.00639 107.982512 27.00639 81.976122 54.491256 1.736326818 -0.129373 70 44 SH11802 11802 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5896 5913 2803.663631 1981.817999 2392.740815 3.378895658 0.211318 70 45 SH7309 7309 snR66 snR66 36 53 28.902788 85.855447 57.3791175 1.758753864 -0.049069 70 46 SH20815 20815 YKL190W spliced 27.093467 75.490829 51.292148 1.710050887 -0.041404 70 47 SH19947 19947 YBL040C spliced 29.33286 78.752153 54.0425065 1.732735483 0.066497 70 48 SH19333 19333 YPL218W_16_138697_139408_INTRON_29_167 3' exon 31.134797 126.509355 31.134797 96.374558 63.7546775 1.804512053 -0.136071 70 49 SH12288 12288 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.667294 117.455338 30.667294 87.788044 59.227669 1.772524641 -0.004193 70 50 SH3475 3475 Tyr1 5' flank 32.840429 74.753706 53.7970675 1.730758603 0.331488 70 51 SH19329 19329 YPL218W_16_138697_139408_INTRON_29_167 intron 26.406825 93.717373 26.406825 68.310548 47.3586865 1.675399649 0.005068 70 52 SH16476 16476 YER102W_5_362729_363698_INTRON_1_360 intron 31.334242 124.050959 31.334242 93.716717 62.5254795 1.796057031 -0.076494 70 53 SH12990 12990 MT COX1 COX1ai2 28.163463 114.084117 28.163463 86.920654 57.5420585 1.759985394 -0.108967 70 54 SH18872 18872 YNR053C_14_723108_721117_INTRON_811_1341 intron 29.265535 102.450666 29.265535 74.185131 51.725333 1.713703295 0.121981 70 55 SH596 596 Gln1 tRNA 21 37 31.209676 78.335343 54.7725095 1.738562639 0.188666 70 56 SH11046 11046 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2116 2134 30969.96463 17542.82073 24256.39268 4.384826215 -0.107622 70 57 SH2385 2385 Phe4 5' flank 29.627751 83.356051 56.491901 1.751986189 0.02846 70 58 SH12190 12190 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7836 7853 33.378317 86.299762 59.8390395 1.776984614 0.135635 70 59 SH11562 11562 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4696 4711 348.225409 369.774859 359.000134 2.555094611 0.152617 70 60 SH1034 1034 Gly3 5' flank 27.490422 94.934314 61.212368 1.786839181 -0.271627 70 61 SH8648 8648 snR19 / U1 RNA 3' 29.867833 77.531484 53.6996585 1.729971524 0.116191 70 62 SH11246 11246 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3116 3135 1010.806332 1217.061036 1113.933684 3.046859337 -0.363346 70 63 SH11610 11610 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4936 4951 70.696292 109.273355 89.9848235 1.954169269 0.339435 70 64 SH5525 5525 snR33 5' 35.891041 96.394265 66.142653 1.820481611 -0.014977 70 65 SH3820 3820 RNaseP RNaseP 66 84 26.60794 74.031619 50.3197795 1.701738729 -0.057498 70 66 SH12020 12020 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6986 7003 54.853226 110.804251 82.8287385 1.918181047 0.06801 70 67 SH16587 16587 YFL034C-A_6_64931_64242_INTRON_13_333 intron 25.496944 92.479061 25.496944 67.982117 46.7395305 1.669684346 -0.05761 70 68 SH13408 13408 MT COX1 intronic 30.451872 129.099986 30.451872 99.648114 65.049993 1.813247254 -0.222858 70 69 SH2329 2329 Phe3 5' flank 33.905327 83.11235 58.5088385 1.767221477 0.21482 70 70 SH12230 12230 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.725122 114.124942 32.725122 82.39982 57.562471 1.760139429 0.180721 70 71 SH19856 19856 Negative Control 33.060829 93.156823 63.108826 1.800090101 -0.015811 70 72 SH15151 15151 MT tRNA Thr1 reverse complement 3' 26.76217 93.642672 26.76217 67.880502 47.321336 1.675056997 0.03687 70 73 SH11875 11875 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6261 6274 52.531088 102.649799 77.5904435 1.889808234 0.180617 70 74 SH6800 6800 snR52 5' 26.750772 75.556817 51.1537945 1.708877854 -0.066756 70 75 SH446 446 Asp1 tRNA 51 65 30.610071 73.811889 52.21098 1.717761845 0.211666 70 76 SH17229 17229 YHR077C_8_255757_252375_INTRON_7_119 intron 27.953735 108.161418 27.953735 81.207683 54.580709 1.737039173 -0.054982 70 77 SH4884 4884 snR8 3' 25.806174 70.097253 47.9517135 1.680804131 -0.064018 70 78 SH6047 6047 snR37 snR37 151 167 120.022299 196.921094 158.4716965 2.199951707 -0.122903 70 79 SH7137 7137 snR63 snR63 191 210 28.724189 77.765797 53.244993 1.726278774 0.039607 70 80 SH11677 11677 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5271 5287 3217.61527 2264.458679 2741.036975 3.437914894 0.180031 70 81 SH4290 4290 telomerase RNA telomerase 486 505 26.961522 74.254412 50.607967 1.704218891 -0.034959 70 82 SH5155 5155 snR13 5' 26.696048 77.271328 51.983688 1.715867087 -0.092231 70 83 SH9815 9815 RUF4 3' 25.94063 67.591536 46.766083 1.669930996 -0.019081 70 84 SH6147 6147 snR39B snR39B 76 90 46.741753 109.356503 78.049128 1.892368055 -0.049761 70 85 SH15385 15385 YBL027W_2_168385_169338_INTRON_3_386 3' exon 33.048198 109.297132 33.048198 77.248934 55.148566 1.741534224 0.293727 70 86 SH1104 1104 Gly4 5' flank - tRNA8 8 31.244524 84.264411 57.7544675 1.761585584 0.084138 70 87 SH16038 16038 YDL191W_4_117665_118518_INTRON_4_494 intron 27.490657 102.417745 27.490657 75.927088 51.7088725 1.713565068 -0.019139 70 88 SH2528 2528 Pro1 3' flank 30.30028 86.371176 58.335728 1.765934622 0.004864 70 89 SH15463 15463 YBL087C_2_60732_59815_INTRON_43_546 intron 28.732843 108.065853 28.732843 80.33301 54.5329265 1.736658805 0.007656 70 90 SH13363 13363 MT COX1 intronic 26.709564 105.58199 26.709564 79.872426 53.290995 1.726653829 -0.124168 70 91 SH12051 12051 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7141 7154 28.531271 77.165762 52.8485165 1.723032801 0.034665 70 92 SH7535 7535 snR79 snR79 16 33 29.749179 101.779198 65.7641885 1.817989465 -0.285782 70 93 SH16528 16528 YER131W_5_423587_424307_INTRON_1_361 intron 48.291069 152.181848 48.291069 104.890779 76.590924 1.884177309 0.062427 70 94 SH14588 14588 MT 21S rRNA Sce1 endonuc 28.195839 104.348782 28.195839 77.152943 52.674391 1.721599523 0.012548 70 95 SH6046 6046 snR37 snR37 146 162 56.834537 111.845501 84.340019 1.926033695 0.083567 70 96 SH636 636 Gln2 5' flank 26.590748 79.009907 52.8003275 1.722636616 -0.121698 70 97 SH5439 5439 snR31 3' 31.281548 83.146711 57.2141295 1.757503295 0.10638 70 98 SH20791 20791 YKL156W spliced 33.84809 85.506769 59.6774295 1.775810108 0.168622 70 99 SH7564 7564 snR79 3' 27.770375 79.796898 53.7836365 1.730650163 -0.049836 70 100 SH19706 19706 Negative Control 28.178899 85.959766 57.0693325 1.756402793 -0.096805 70 101 SH12184 12184 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7806 7823 32.874101 104.417423 68.645762 1.83661373 -0.252375 70 102 SH21296 21296 YPL198W spliced 30.487888 80.952622 55.720255 1.746013095 0.111674 70 103 SH8381 8381 snoRNA cluster 5 5' 27.719438 110.536231 27.719438 83.816793 55.7681155 1.746385969 -0.102503 70 104 SH12786 12786 MT COX1 COX1ai1 237.048597 732.850274 237.048597 496.801677 366.925137 2.564577465 -0.813073 71 2 SH11393 11393 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3851 3868 42095.90137 19125.55244 30610.7269 4.485873643 0.157075 71 3 SH4464 4464 telomerase RNA 3' 34.176217 93.927911 64.052064 1.806533129 -0.004189 71 4 SH12312 12312 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.505056 122.703553 31.505056 92.198497 61.8517765 1.791352178 -0.043951 71 5 SH17491 17491 YJL041W_10_365480_368069_INTRON_2_119 5' exon 37.726852 129.666513 37.726852 92.939661 65.3332565 1.815134306 0.101772 71 6 SH2117 2117 Met1 5' flank 25.984269 69.834316 47.9092925 1.680419757 -0.047167 71 7 SH20253 20253 YDR381W spliced 37.457015 88.184712 62.8208635 1.798103902 0.202281 71 8 SH8011 8011 snoRNA cluster 2 intergenic 27.461198 89.872675 27.461198 63.411477 45.4363375 1.657403317 0.151878 71 9 SH21636 21636 copy of SH8141 496.018571 371.897761 433.958166 2.637447865 0.594429 71 10 SH21126 21126 YNL130C spliced 27.927031 67.503016 47.7150235 1.678655142 0.124272 71 11 SH15161 15161 MT tRNA Val 5' / tRNA 29.330924 92.380035 29.330924 64.049111 46.6900175 1.669224037 0.269127 71 12 SH5730 5730 snR34 3' 38.096613 76.188563 57.142588 1.756959906 0.505376 71 13 SH17732 17732 YKL156W_11_158616_159214_INTRON_4_353 intron 31.264693 111.515924 31.264693 81.251231 56.257962 1.750183995 0.141333 71 14 SH3949 3949 RNase MRP RNaseMRP 161 173 41.10132 86.084229 63.5927745 1.803407773 0.330446 71 15 SH10209 10209 RUF6 RUF6 891 905 57.915671 103.217931 80.566801 1.90615612 0.256902 71 16 SH3019 3019 Ser2 tRNA 56 68 52.9687 89.330678 71.149689 1.852173006 0.466919 71 17 SH12462 12462 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 35313.94719 51329.65637 35313.94719 16016.70918 25665.32818 4.409346822 0.207566 71 18 SH4716 4716 snR4 snR4 116 130 68.906242 123.370227 96.1382345 1.982896142 0.084597 71 19 SH10622 10622 RUF8 3' 30.638319 78.326031 54.482175 1.736254437 0.153972 71 20 SH4094 4094 SRP RNA SRP RNA 361 375 30.066244 73.929156 51.9977 1.715984134 0.176301 71 21 SH16007 16007 YDL137W_4_216158_217074_INTRON_1_332 intron 87.310661 209.527172 87.310661 123.216511 105.263586 2.022278161 0.334956 71 22 SH8699 8699 LSR1 / U2 RNA U2 136 148 162.032908 173.604803 167.8188555 2.224840755 0.448085 71 23 SH8376 8376 snoRNA cluster 5 5' 24.813301 100.260818 24.813301 76.447517 50.630409 1.704411436 -0.222791 71 24 SH875 875 Glu2 3' flank 30.452605 90.734586 60.5935955 1.782426723 -0.064666 71 25 SH11718 11718 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5476 5492 1041.78694 621.413592 831.600266 2.91991462 0.733602 71 26 SH11146 11146 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2616 2633 17356.11069 9860.518161 13608.31443 4.133804335 0.046564 71 27 SH20872 20872 YLR128W spliced 30.215531 92.760527 61.488029 1.788790572 -0.109287 71 28 SH5844 5844 snR35 snR35 406 425 31.734567 67.67397 49.7042685 1.696393687 0.366566 71 29 SH10585 10585 RUF8 RUF8 851 867 30.574558 85.086897 57.8307275 1.762158656 0.0401 71 30 SH5215 5215 snR30 5' 30.346955 67.340985 48.84397 1.688810956 0.286615 71 31 SH21428 21428 Tyr1_2 spliced 41.878324 113.577808 77.728066 1.890577862 -0.221522 71 32 SH3621 3621 Val1 3' flank 24.244407 62.303142 43.2737745 1.636224778 -0.063116 71 33 SH18681 18681 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.358823 98.624044 29.358823 70.265221 49.812022 1.697334171 0.182075 71 34 SH11196 11196 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2866 2888 27.046136 79.701474 53.373805 1.727328165 -0.098428 71 35 SH6196 6196 snR40 snR40 41 56 31.253316 99.864759 65.5590375 1.816632569 -0.205064 71 36 SH9178 9178 snR7 U5 RNA U5 161 179 35.302677 91.277958 63.2903175 1.801337274 0.081642 71 37 SH11425 11425 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4011 4026 514.896416 341.45789 428.177153 2.63162349 0.779514 71 38 SH15295 15295 MT 9S rRNA 9S / 3' 28.223975 91.919997 28.223975 64.696022 46.4599985 1.667079191 0.185396 71 39 SH3246 3246 Thr1 3' flank 28.053345 84.840128 56.4467365 1.751638838 -0.092092 71 40 SH13650 13650 MT ATP6 ATP6 27.185989 104.986322 27.185989 78.800333 52.993161 1.724219826 -0.077326 71 41 SH7884 7884 snoRNA cluster1 snR73 51.834739 158.097705 51.834739 107.262966 79.5488525 1.900633919 0.081118 71 42 SH1580 1580 Leu4 tRNA-intron/exon 71 87 90.785619 201.498316 146.1419675 2.16477495 -0.491685 71 43 SH21168 21168 YNL302C spliced 32.411378 90.416791 61.4140845 1.788267982 0.024196 71 44 SH4754 4754 snR5 5' 29.602204 74.838584 52.220394 1.717840144 0.134753 71 45 SH7245 7245 snR65 snR65 1 23 28.794311 72.488855 50.641583 1.704507273 0.114555 71 46 SH4357 4357 telomerase RNA telomerase 821 840 27.221 74.391097 50.8060485 1.705915418 -0.018278 71 47 SH21408 21408 Ser3 spliced 31.886761 87.129709 59.508235 1.774577069 0.059642 71 48 SH14056 14056 MT COB Cytbi4 26.771804 102.287226 26.771804 76.515422 51.643613 1.713016618 -0.077341 71 49 SH21728 21728 copy of SH11923 35.150396 87.595664 61.37303 1.787977565 0.161566 71 50 SH13110 13110 MT COX1 COX1ai3 28.119981 108.926105 28.119981 81.806124 54.9630525 1.740070844 -0.051161 71 51 SH1733 1733 Leu7 5' flank 30.665218 79.936103 55.3006605 1.742730318 0.135253 71 52 SH18389 18389 YMR116C_13_500687_499455_INTRON_538_810 intron 29.087774 107.800427 29.087774 79.712653 54.4002135 1.735600604 0.03855 71 53 SH18857 18857 YNR053C_14_723108_721117_INTRON_811_1341 intron 27.280471 113.440612 27.280471 87.160141 57.220306 1.757550176 -0.171741 71 54 SH4987 4987 snR10 5' 27.211993 64.966234 46.0891135 1.663598355 0.111078 71 55 SH7230 7230 snR65 5' 26.484644 74.873222 50.678933 1.704827463 -0.07729 71 56 SH21143 21143 YNL162W spliced 29.734397 87.000258 58.3673275 1.766169808 -0.031595 71 57 SH15661 15661 YBR189W_2_604466_605466_INTRON_8_420 intron 26.506933 94.685148 26.506933 69.178215 47.842574 1.679814537 0.000243 71 58 SH15560 15560 YBR082C_2_407127_406586_INTRON_48_142 intron/exon 45.30066 148.070867 45.30066 103.770207 74.5354335 1.872362782 0.028979 71 59 SH18138 18138 YLR406C_12_931752_931062_INTRON_58_406 intron 24.471374 98.982036 24.471374 75.510662 49.991018 1.698891981 -0.237681 71 60 SH6321 6321 snR42 3' 29.354942 89.372385 59.3636635 1.773520695 -0.090399 71 61 SH15601 15601 YBR089C-A_2_426588_426148_INTRON_1_114 3' exon 29.524766 121.556472 29.524766 93.031706 61.278236 1.787306255 -0.144756 71 62 SH7900 7900 snoRNA cluster1 intergenic 26.83311 99.036186 26.83311 73.203076 50.018093 1.69912713 -0.030469 71 63 SH19142 19142 YPL075W_16_412249_415357_INTRON_9_759 intron 37.054805 119.467462 37.054805 83.412657 60.233731 1.779839765 0.306026 71 64 SH1305 1305 Ile3 5' flank 28.624932 90.892117 59.7585245 1.776399866 -0.150189 71 65 SH3009 3009 Ser2 tRNA 6 18 441.283239 780.710886 610.9970625 2.786039122 -0.744964 71 66 SH7829 7829 snoRNA cluster1 intergenic 27.514117 109.672406 27.514117 83.158289 55.336203 1.743009356 -0.108614 71 67 SH10155 10155 RUF6 RUF6 621 641 25.811506 61.4672 43.639353 1.639878303 0.067685 71 68 SH9862 9862 RUF5-1 RUF5-1 116 134 28.437818 88.840722 58.63927 1.768188555 -0.123652 71 69 SH13032 13032 MT COX1 COX1ai2 26.381701 96.452674 26.381701 71.070973 48.726337 1.687763765 -0.034779 71 70 SH9224 9224 snR6 / U6 RNA 5' - 6 -9 6 27.652486 76.146877 51.8996815 1.715164693 -0.010974 71 71 SH12418 12418 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.954412 103.235254 27.954412 76.280842 52.117627 1.716984633 0.007727 71 72 SH21684 21684 copy of SH10239 28.279086 82.736664 55.507875 1.744354602 -0.051855 71 73 SH2398 2398 Phe4 tRNA-intron/exon 41 57 29.421337 78.817411 54.119374 1.733352764 0.071342 71 74 SH13566 13566 MT COX1 Exon 6 26.687037 114.75966 26.687037 89.072623 57.87983 1.762527247 -0.234911 71 75 SH18005 18005 YLR287C-A_12_713158_712537_INTRON_4_433 intron 32.952483 107.866515 32.952483 75.914032 54.4332575 1.735864325 0.316811 71 76 SH3169 3169 Ser5 5' flank 26.029678 65.068703 45.5491905 1.658480663 0.025554 71 77 SH9849 9849 RUF5-1 RUF5-1 51 69 30.661212 101.256261 65.9587365 1.819272328 -0.249512 71 78 SH10061 10061 RUF6 RUF6 151 172 26.598751 73.400418 49.9995845 1.698966395 -0.049947 71 79 SH9310 9310 RUF1 RUF1 126 142 29.37164 77.728745 53.5501925 1.728761036 0.082082 71 80 SH17652 17652 YJR145C_10_702761_701720_INTRON_15_270 intron 29.724353 102.535714 29.724353 73.811361 51.767857 1.714060187 0.156349 71 81 SH19082 19082 YOR293W_15_867094_867848_INTRON_53_489 intron 27.331127 99.522107 27.331127 73.19098 50.2610535 1.701231587 0.005104 71 82 SH21603 21603 copy of SH6674 29.097948 82.225542 55.661745 1.745556817 0.008134 71 83 SH956 956 Gly1 tRNA 31 45 34.837882 98.699152 66.768517 1.82457173 -0.088417 71 84 SH21243 21243 YOR312C spliced 27.282025 88.261933 57.771979 1.761717245 -0.184211 71 85 SH11435 11435 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4061 4078 48.962435 87.885609 68.424022 1.835208599 0.43259 71 86 SH17233 17233 YHR077C_8_255757_252375_INTRON_7_119 intron 25.530733 103.562831 25.530733 79.032098 52.2814155 1.718347337 -0.199805 71 87 SH15382 15382 YBL027W_2_168385_169338_INTRON_3_386 intron 28.20504 115.36188 28.20504 88.15684 58.18094 1.764780734 -0.122698 71 88 SH18511 18511 YMR201C_13_667043_665844_INTRON_28_111 5' exon 35.218384 120.552678 35.218384 86.334294 60.776339 1.783734536 0.192671 71 89 SH12738 12738 MT COX1 COX1ai1 32.14836 112.849735 32.14836 81.701375 56.9248675 1.755302028 0.17009 71 90 SH12352 12352 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.971416 112.744234 28.971416 84.772818 56.872117 1.754899395 -0.030624 71 91 SH15211 15211 MT COX3 cox3 26.53785 94.196729 26.53785 68.658879 47.5983645 1.67759203 0.009719 71 92 SH17831 17831 YKR094C_11_618384_617630_INTRON_9_376 intron 32.493208 151.004265 32.493208 119.511057 76.0021325 1.880825778 -0.539623 71 93 SH8636 8636 snR19 / U1 RNA 3' 27.010836 86.687146 56.848991 1.754722761 -0.185009 71 94 SH7992 7992 snoRNA cluster 2 intergenic 25.970644 90.272168 25.970644 65.301524 45.636084 1.659308371 0.01768 71 95 SH4530 4530 U3b (snR17b) U3b 206 220 48.499145 94.58268 71.5409125 1.854554475 0.275486 71 96 SH15553 15553 YBR082C_2_407127_406586_INTRON_48_142 5' exon 28.22108 121.312065 28.22108 94.090985 61.1560325 1.786439303 -0.222714 71 97 SH250 250 Arg3 3' flank 27.129917 72.297967 49.713942 1.696478201 0.002654 71 98 SH3320 3320 Thr3 5' flank 27.817484 63.434594 45.626039 1.659212767 0.176353 71 99 SH1230 1230 Ile1 3' flank 30.594758 102.473287 66.5340225 1.823043781 -0.275628 71 100 SH3960 3960 RNase MRP RNaseMRP 216 232 31.102367 74.295553 52.69896 1.721802045 0.235188 71 101 SH1151 1151 His1 5' flank 26.642868 67.508685 47.0757765 1.672797492 0.033536 71 102 SH13833 13833 MT COB Cytbi2 28.304769 100.71967 28.304769 73.414901 50.859835 1.706374947 0.069537 71 103 SH13263 13263 MT COX1 COX1-ai4 26.334555 105.598158 26.334555 80.263603 53.299079 1.726719705 -0.155701 71 104 SH20999 20999 YML085C spliced 191.164451 483.53505 337.3497505 2.528080393 -1.042066 72 2 SH13658 13658 MT ATP6 ATP6 30.940789 121.778346 30.940789 91.837557 61.389173 1.788091783 -0.062072 72 3 SH14457 14457 MT 21S rRNA 21S rRNA3 23.922929 96.663127 23.922929 73.740198 48.8315635 1.68870063 -0.258566 72 4 SH19979 19979 YBL087C spliced 35.937912 96.695135 66.3165235 1.821621751 -0.02019 72 5 SH12645 12645 MT_15S MT_15S 23.931458 91.375183 23.931458 68.443725 46.1875915 1.664525316 -0.182926 72 6 SH405 405 Asn1 3' flank 28.950703 89.855576 59.4031395 1.773809398 -0.117299 72 7 SH14692 14692 MT 21S rRNA 3' 25.599831 89.930838 25.599831 65.331007 45.465419 1.657681198 -0.009659 72 8 SH7956 7956 snoRNA cluster 2 5' 26.281401 100.794989 26.281401 75.513588 50.8974945 1.706696404 -0.100297 72 9 SH15399 15399 YBL050W_2_125087_126081_INTRON_31_146 intron 29.029909 123.304996 29.029909 95.275087 62.152498 1.793458588 -0.204241 72 10 SH9635 9635 RUF4 5' 29.067489 85.984223 57.525856 1.75986309 -0.043783 72 11 SH7330 7330 snR66 3' 28.526449 84.661271 56.59386 1.752769316 -0.058469 72 12 SH604 604 Gln1 61-72 + 3' flank 61 3' flank 69.769454 159.980119 114.8747865 2.060224717 -0.378993 72 13 SH12498 12498 MT_tRNA Pro tRNA 29.202184 128.715061 29.202184 100.512877 64.8575305 1.811960409 -0.279112 72 14 SH3488 3488 Tyr1 5' flank 26.893756 103.137942 65.015849 1.813019238 -0.429213 72 15 SH15984 15984 YDL136W_4_217600_218367_INTRON_4_408 intron 29.383727 151.811308 29.383727 123.427581 76.405654 1.883125497 -0.688896 72 16 SH15009 15009 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.410887 96.57146 25.410887 72.160573 48.78573 1.688292808 -0.121583 72 17 SH16810 16810 YGL137W_7_249872_252741_INTRON_19_218 3' exon 27.780284 103.547163 27.780284 76.766879 52.2735815 1.718282257 -0.010405 72 18 SH11782 11782 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5796 5811 10112.10371 4712.344111 7412.22391 3.86994853 0.510433 72 19 SH12870 12870 MT COX1 COX1ai1 28.418686 117.949979 28.418686 90.531293 59.4749895 1.774334374 -0.153714 72 20 SH288 288 Arg4 36-50 36 50 136.536468 196.16697 166.351719 2.221027293 0.037115 72 21 SH9127 9127 snR7 U5 RNA 5' 28.632532 87.204743 57.9186375 1.762818337 -0.085766 72 22 SH486 486 Asp2 5' flank - tRNA7 5' flank 7 27.749125 60.43476 44.0919425 1.644359232 0.220197 72 23 SH494 494 Asp2 tRNA 31 43 42.178619 95.736945 68.957782 1.838583284 0.132521 72 24 SH16683 16683 YGL030W_7_439087_439634_INTRON_4_233 intron 26.502307 120.528076 26.502307 95.025769 60.764038 1.783646627 -0.32211 72 25 SH17739 17739 YKL156W_11_158616_159214_INTRON_4_353 intron 24.536012 94.687379 24.536012 71.151367 47.8436895 1.679824663 -0.17554 72 26 SH14665 14665 MT 21S rRNA 21S rRNA4 33.889046 123.378631 33.889046 90.489585 62.1893155 1.793715777 0.064327 72 27 SH5231 5231 snR30 snR30 6 22 28.083224 82.285111 55.1841675 1.741814495 -0.059471 72 28 SH6079 6079 snR37 snR37 311 328 28.46933 81.618463 55.0438965 1.74070917 -0.025598 72 29 SH21031 21031 YMR116C spliced 28.514035 87.35542 57.9347275 1.762938969 -0.093987 72 30 SH20201 20201 YDR025W spliced 30.698475 91.72998 61.2142275 1.786852373 -0.070782 72 31 SH5071 5071 snR11 5' 28.55492 70.962766 49.758843 1.696870274 0.119128 72 32 SH7036 7036 snR62 5' 33.562271 93.191802 63.3770365 1.801931928 -0.003707 72 33 SH15798 15798 YDL061C_4_341182_340627_INTRON_1_408 intron 79.383116 200.304161 79.383116 121.921045 100.6520805 2.002822756 0.253491 72 34 SH6713 6713 snR49 snR49 91 109 38.399552 105.552931 71.9762415 1.857189165 -0.146039 72 35 SH15229 15229 MT COX3 cox3 26.656591 89.486785 26.656591 63.830194 45.2433925 1.655555162 0.089568 72 36 SH9695 9695 RUF4 RUF4 251 271 28.72097 81.759379 55.2401745 1.742255042 -0.010744 72 37 SH9859 9859 RUF5-1 RUF5-1 101 122 28.540616 88.438418 58.489517 1.767078035 -0.111801 72 38 SH12185 12185 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7811 7828 33.01027 93.583532 63.296901 1.801382448 -0.026399 72 39 SH5099 5099 snR11 snR11 96 117 26.094846 73.537244 49.816045 1.697369245 -0.088568 72 40 SH16238 16238 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 32.174133 115.653181 32.174133 84.479048 58.3265905 1.76586659 0.119443 72 41 SH13391 13391 MT COX1 intronic 24.745965 95.23876 24.745965 71.492795 48.11938 1.682320023 -0.163725 72 42 SH9561 9561 RUF3 RUF3 191 207 28.152354 72.385186 50.26877 1.701298259 0.07274 72 43 SH21088 21088 YNL012W spliced 47.862568 105.449116 76.655842 1.884545258 0.04389 72 44 SH11433 11433 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4051 4067 245.57127 240.461735 243.0165025 2.385635766 0.411652 72 45 SH724 724 Gln3 3' flank 28.558421 89.948712 59.2535665 1.772714496 -0.137162 72 46 SH7789 7789 snoRNA cluster1 snR75 34.16715 114.282682 34.16715 81.115532 57.641341 1.760734076 0.262737 72 47 SH6476 6476 snR45 3' 27.23982 78.303901 52.7718605 1.722402406 -0.067271 72 48 SH16774 16774 YGL103W_7_310965_311925_INTRON_50_560 intron 29.044485 110.467622 29.044485 82.423137 55.733811 1.746118741 0.002265 72 49 SH3471 3471 Trp1 3' flank 30.423973 81.298157 55.861065 1.747109211 0.103455 72 50 SH21610 21610 copy of SH7091 29.691348 71.962999 50.8271735 1.706095959 0.179647 72 51 SH1566 1566 Leu4 tRNA 1 13 150.784888 263.940554 207.362721 2.316730683 -0.342129 72 52 SH17200 17200 YHR021C_8_148660_147862_INTRON_4_553 intron/exon 28.333244 99.71773 28.333244 72.384486 50.358865 1.702075933 0.085084 72 53 SH5565 5565 snR33 snR33 111 127 29.130793 84.747949 56.939371 1.755412665 -0.019993 72 54 SH4025 4025 SRP RNA SRP RNA 16 31 29.234544 86.332644 57.783594 1.76180455 -0.042369 72 55 SH5257 5257 snR30 snR30 136 148 30.62857 80.721557 55.6750635 1.745660721 0.12321 72 56 SH10912 10912 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1446 1459 40.297033 97.062746 68.6798895 1.836829588 0.066606 72 57 SH17885 17885 YLR048W_12_242233_243350_INTRON_91_449 intron 28.322238 120.912342 28.322238 93.590104 60.956171 1.785017679 -0.209668 72 58 SH3657 3657 Val2 tRNA 26 41 41.033905 92.203072 66.6184885 1.823594775 0.18746 72 59 SH14993 14993 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 26.740212 86.742803 26.740212 61.002591 43.8714015 1.642181508 0.141467 72 60 SH12349 12349 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 40.525588 128.994291 40.525588 89.468703 64.9971455 1.812894284 0.239299 72 61 SH11223 11223 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3001 3023 27.338802 81.267119 54.3029605 1.734823507 -0.097626 72 62 SH21050 21050 YMR143W spliced 33.27513 92.738548 63.006839 1.799387692 -0.00115 72 63 SH1741 1741 Leu7 tRNA 1 13 39614.27744 22958.86964 31286.57354 4.495358002 -0.210672 72 64 SH3952 3952 RNase MRP RNaseMRP 176 192 29.06454 67.399126 48.231833 1.683333767 0.202635 72 65 SH11346 11346 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3616 3633 27.623191 72.476827 50.050009 1.69940416 0.034983 72 66 SH5170 5170 snR13 snR13 6 27 27.959583 72.88804 50.4238115 1.702635671 0.052865 72 67 SH21465 21465 copy of SH1001 37.05413 98.844027 67.9490785 1.832183571 -0.039932 72 68 SH12837 12837 MT COX1 COX1ai1 28.278234 120.818478 28.278234 93.540244 60.909239 1.784683173 -0.210925 72 69 SH15300 15300 MT 9S rRNA 3' 30.798889 106.619447 30.798889 76.820558 53.8097235 1.73086076 0.183252 72 70 SH16202 16202 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 31.104935 121.87524 31.104935 91.770305 61.43762 1.788434383 -0.053857 72 71 SH13221 13221 MT COX1 COX1-ai4 26.81786 100.932733 26.81786 75.114873 50.9663665 1.707283673 -0.056303 72 72 SH1853 1853 Leu9 tRNA 6 18 2042.850678 3381.432235 2712.141457 3.433312337 -1.046409 72 73 SH10 10 Ala1 5' flank 26.974218 82.52575 54.749984 1.738383997 -0.13831 72 74 SH5240 5240 snR30 snR30 51 65 45.000987 105.748314 75.3746505 1.877225311 -0.01501 72 75 SH18356 18356 YMR033W_13_337787_339276_INTRON_31_116 exon/intron 26.000288 99.273539 26.000288 74.273251 50.1367695 1.700156347 -0.105115 72 76 SH20725 20725 YJL177W spliced 34.455501 95.836285 65.145893 1.813887042 -0.038077 72 77 SH16688 16688 YGL030W_7_439087_439634_INTRON_4_233 intron 27.874776 96.478838 27.874776 69.604062 48.739419 1.687880348 0.091253 72 78 SH12998 12998 MT COX1 COX1ai2 28.353192 118.73965 28.353192 91.386458 59.869825 1.777207989 -0.171346 72 79 SH11298 11298 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3376 3394 29.022252 71.856547 50.4393995 1.702769907 0.138183 72 80 SH21458 21458 copy of SH634 29.504308 87.930885 58.7175965 1.76876827 -0.058452 72 81 SH11702 11702 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5396 5411 12640.14624 6425.568553 9532.857396 3.979223096 0.310408 72 82 SH17485 17485 YJL024C_10_396288_395627_INTRON_23_99 intron 28.998708 107.709895 28.998708 79.711187 54.3549475 1.735239081 0.03279 72 83 SH4925 4925 snR9 snR9 31 47 27.336693 77.969718 52.6532055 1.721424816 -0.0563 72 84 SH20367 20367 YER133W spliced 28.097105 81.900192 54.9986485 1.740352018 -0.053845 72 85 SH9797 9797 RUF4 RUF4 761 778 28.165959 91.595531 59.880745 1.777287195 -0.183749 72 86 SH13844 13844 MT COB Cytbi2 26.350874 108.195812 26.350874 82.844938 54.597906 1.737175986 -0.186227 72 87 SH8372 8372 snoRNA cluster 5 5' 28.855571 94.300119 28.855571 66.444548 47.6500595 1.678063447 0.202427 72 88 SH19303 19303 YPL198W_16_173151_174701_INTRON_12_420 intron 28.877758 111.994288 28.877758 84.11653 56.497144 1.752026494 -0.028943 72 89 SH21799 21799 copy of SH15069 28.90251 80.695914 54.799212 1.738774313 0.014237 72 90 SH11819 11819 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5981 5998 33.627604 77.356836 55.49222 1.744232099 0.31483 72 91 SH18635 18635 YNL096C_14_444312_443395_INTRON_145_489 intron 31.376346 159.685812 31.376346 129.309466 80.342906 1.904947536 -0.730935 72 92 SH10059 10059 RUF6 RUF6 141 163 28.67613 93.423364 61.049747 1.785683868 -0.19029 72 93 SH18558 18558 YMR292W_13_854795_855293_INTRON_23_104 exon/intron 27.659278 108.717085 27.659278 82.057807 54.8585425 1.739244265 -0.085362 72 94 SH1721 1721 Leu7 5' flank 28.385806 87.250166 57.817986 1.76206296 -0.098155 72 95 SH3841 3841 RNaseP RNaseP 171 185 44.16401 101.41275 72.78838 1.862062054 0.05381 72 96 SH12930 12930 MT COX1 COX1ai2 28.050354 112.350765 28.050354 85.300411 56.6753825 1.75339446 -0.09771 72 97 SH4837 4837 snR8 5' 27.165962 69.277967 48.2219645 1.683244899 0.046155 72 98 SH21317 21317 YPL249C-A spliced 30.312681 77.039921 53.676301 1.72978258 0.150415 72 99 SH4447 4447 telomerase RNA telomerase 1271 1283 308.675527 317.105432 312.8904795 2.495392349 0.247616 72 100 SH7529 7529 snR79 5' - 6 -14 6 29.155054 72.538297 50.8466755 1.706262563 0.137331 72 101 SH9412 9412 RUF2 5' 26.796492 85.92071 56.358601 1.750960204 -0.191129 72 102 SH19720 19720 Negative Control 29.805304 89.720686 59.762995 1.776432354 -0.076038 72 103 SH16146 16146 YDR092W_4_629869_630598_INTRON_31_298 intron 218.85866 818.514941 218.85866 600.656281 409.7574705 2.61252688 -1.220815 72 104 SH8840 8840 LSR1 / U2 RNA U2 841 856 828.745909 1720.605136 1274.675523 3.105399646 -1.167748 73 2 SH14949 14949 MT tRNA Met tRNA 26.623511 93.865141 26.623511 68.24163 47.4325705 1.676076661 0.021775 73 3 SH15748 15748 YCR031C_3_178212_177492_INTRON_8_314 exon/intron 28.427667 104.291639 28.427667 76.863972 52.6458195 1.72136389 0.031734 73 4 SH20645 20645 YHR203C spliced 36.504356 94.28397 65.394163 1.815538985 0.044455 73 5 SH20977 20977 YML056C spliced 41.270187 99.346292 70.3082395 1.847006223 0.038275 73 6 SH8326 8326 snoRNA cluster4 intergenic 29.493213 120.50053 29.493213 92.007317 60.750265 1.783548177 -0.129059 73 7 SH20071 20071 YCR028C-A spliced 28.220821 87.242477 57.731649 1.761413963 -0.108834 73 8 SH11938 11938 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6576 6589 88.822573 133.127068 110.9748205 2.045224451 0.212979 73 9 SH10528 10528 RUF8 RUF8 566 583 29.135682 90.377764 59.756723 1.776386773 -0.117739 73 10 SH13939 13939 MT COB Cytbi3 29.266363 107.685571 29.266363 79.419208 54.3427855 1.735141896 0.053775 73 11 SH14541 14541 MT 21S rRNA 21S rRNA3 26.708236 106.7721 26.708236 81.063864 53.88605 1.73147635 -0.139086 73 12 SH12661 12661 MT_15S MT_15S 28.388733 102.287509 28.388733 74.898776 51.6437545 1.713017808 0.055083 73 13 SH19525 19525 CBP1 1.2 27.88266 103.19093 65.536795 1.816485199 -0.381676 73 14 SH2356 2356 Phe3 3' flank 36.517452 90.134315 63.3258835 1.801581258 0.136162 73 15 SH974 974 Gly1 3' flank 34.399657 142.866469 88.633063 1.947595758 -0.855468 73 16 SH7966 7966 snoRNA cluster 2 5' 27.813182 96.788357 27.813182 69.975175 48.8941785 1.689257154 0.08189 73 17 SH4930 4930 snR9 snR9 56 71 34.390798 83.854903 59.1228505 1.771755365 0.220089 73 18 SH5366 5366 snR30 3' 27.652869 72.670955 50.161912 1.700374082 0.034484 73 19 SH4176 4176 telomerase RNA 5' 28.128071 83.942705 56.035388 1.748462383 -0.076433 73 20 SH12887 12887 MT COX1 COX1ai1 28.736287 107.163136 28.736287 79.426849 54.081568 1.733049275 0.01924 73 21 SH11067 11067 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2221 2240 167.204231 168.214381 167.709306 2.224557162 0.538947 73 22 SH19098 19098 YOR312C_15_901173_900242_INTRON_2_427 intron 30.356729 120.474442 30.356729 91.117713 60.737221 1.783454917 -0.075405 73 23 SH5481 5481 snR32 snR32 66 82 40.700216 112.160364 76.43029 1.883265507 -0.220507 73 24 SH8260 8260 snoRNA cluster4 5'/snR67 24.928173 91.093968 24.928173 67.165795 46.046984 1.66320119 -0.087501 73 25 SH5491 5491 snR32 snR32 116 131 51.196112 124.941866 88.068989 1.944823011 -0.230003 73 26 SH20795 20795 YKL156W spliced 29.694358 74.443104 52.068731 1.716576993 0.145914 73 27 SH15993 15993 YDL136W_4_217600_218367_INTRON_4_408 intron/exon 26.07 101.687693 26.07 76.617693 51.3438465 1.710488401 -0.12978 73 28 SH17636 17636 YJR094W-A_10_608000_608553_INTRON_3_277 intron/exon 35.463193 127.201611 35.463193 92.738418 64.1008055 1.806863487 0.053286 73 29 SH4722 4722 snR4 snR4 146 161 26.492554 71.486448 48.989501 1.690103016 -0.032297 73 30 SH15010 15010 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.91152 106.16942 28.91152 78.2579 53.58471 1.729040885 0.045539 73 31 SH12019 12019 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6981 6999 60.6469 116.065856 88.356378 1.946237904 0.073446 73 32 SH9906 9906 RUF5-1 RUF5-1 336 355 27.08707 71.707698 49.397384 1.69370395 0.007477 73 33 SH20909 20909 YLR333C spliced 29.380355 85.986585 57.68347 1.761051378 -0.029496 73 34 SH2331 2331 Phe3 5' flank - tRNA2 2 29.221356 82.560583 55.8909695 1.747341643 0.012036 73 35 SH21235 21235 YOR293W spliced 31.379017 83.113289 57.246153 1.757746307 0.111166 73 36 SH3417 3417 Trp1 5' flank 31.193166 92.866003 62.0295845 1.792598872 -0.068426 73 37 SH19442 19442 YPR187W_16_911252_911795_INTRON_21_96 intron 28.692677 102.488976 28.692677 74.796299 51.744488 1.713864094 0.076519 73 38 SH6612 6612 snR47 3' 28.637478 73.058354 50.847916 1.706273158 0.096429 73 39 SH2218 2218 Phe1 5' flank 37.831683 96.334741 67.083212 1.826613849 0.030193 73 40 SH21863 21863 copy of SH18013 26.26887 70.425335 48.3471025 1.684370451 -0.034276 73 41 SH2743 2743 Pro5 96-103 + 3' flank 96 28.034573 80.970597 54.502585 1.736417101 -0.046614 73 42 SH11788 11788 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5826 5839 10583.27273 5951.279941 8267.276338 3.917362454 0.200315 73 43 SH7670 7670 snoRNA cluster1 snR78 26.960268 108.705751 26.960268 82.745483 54.8528755 1.739199399 -0.141947 73 44 SH8872 8872 LSR1 / U2 RNA U2 1001 1017 86.453853 124.325925 105.389889 2.022798947 0.308131 73 45 SH7094 7094 snR63 5' 31.022187 102.572536 66.7973615 1.824759308 -0.265735 73 46 SH8857 8857 LSR1 / U2 RNA U2 926 941 158.024446 263.636259 210.8303525 2.323933135 -0.283016 73 47 SH2432 2432 Phe5 5' flank 29.370086 87.129682 58.249884 1.765295065 -0.050394 73 48 SH15365 15365 YBL027W_2_168385_169338_INTRON_3_386 intron 26.49243 108.061368 26.49243 82.568938 54.530684 1.736640945 -0.172791 73 49 SH5941 5941 snR36 snR36 161 178 27.829549 79.619083 53.724316 1.730170895 -0.043591 73 50 SH17851 17851 YKR095W-A_11_625432_625839_INTRON_39_113 5' exon 33.307966 130.526571 33.307966 98.218605 65.7632855 1.817983502 -0.11689 73 51 SH2404 2404 Phe4 tRNA 71 87 39.444628 101.745411 70.5950195 1.848774063 -0.048168 73 52 SH16268 16268 YDR447C_4_1355542_1354818_INTRON_4_317 exon/intron 27.241365 117.647224 27.241365 91.405859 59.323612 1.773227586 -0.225215 73 53 SH1927 1927 Lys1 3' flank 30.390329 85.919067 58.154698 1.764584805 0.016955 73 54 SH12196 12196 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7866 7886 26.271708 71.232294 48.752001 1.687992446 -0.045001 73 55 SH2292 2292 Phe2 tRNA-intron/exon 56 70 149.808381 207.276258 178.5423195 2.251741173 0.055077 73 56 SH11260 11260 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3186 3201 57.160221 101.268842 79.2145315 1.898804858 0.283028 73 57 SH1908 1908 Lys1 5' flank - tRNA12 12 31.275966 77.392464 54.334215 1.735073397 0.204788 73 58 SH15895 15895 YDL082W_4_308423_309387_INTRON_5_369 3' exon 27.178896 112.872912 27.178896 86.694016 56.936456 1.755390431 -0.173401 73 59 SH1008 1008 Gly2 tRNA 31 45 105.73663 208.797088 157.266859 2.196637213 -0.372817 73 60 SH10247 10247 RUF6 3' 28.041696 88.550379 58.2960375 1.765639036 -0.137362 73 61 SH2355 2355 Phe3 3' flank 27.802692 79.487454 53.645073 1.729529841 -0.043754 73 62 SH3387 3387 Thr4 tRNA 21 35 27.061476 87.686538 57.374007 1.758715182 -0.192956 73 63 SH8873 8873 LSR1 / U2 RNA U2 1006 1022 37.403595 97.741604 67.5725995 1.829770626 -0.009074 73 64 SH13467 13467 MT COX1 intronic 27.102465 96.323329 27.102465 70.220864 48.6616645 1.68718696 0.028677 73 65 SH21695 21695 copy of SH10660 31.075012 97.596482 64.335747 1.808452348 -0.163299 73 66 SH1206 1206 Ile1 5' flank - tRNA7 7 30.103192 88.075647 59.0894195 1.771509723 -0.034101 73 67 SH10011 10011 RUF6 5' 26.628256 75.269135 50.9486955 1.707133069 -0.071936 73 68 SH8299 8299 snoRNA cluster4 intergenic 34.298524 106.790578 34.298524 73.492054 53.895289 1.731550805 0.420555 73 69 SH3801 3801 RNaseP 5' flank 80.25396 137.623479 108.9387195 2.037182266 0.044063 73 70 SH11891 11891 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6341 6358 164.270323 221.343705 192.807014 2.285122829 0.055995 73 71 SH12558 12558 MT_15S MT_15S 35.511207 118.531535 35.511207 84.020328 59.7657675 1.776452501 0.254918 73 72 SH2403 2403 Phe4 tRNA 66 80 33.675485 81.027276 57.3513805 1.758543876 0.245021 73 73 SH37 37 Ala1 3' flank 26.885289 77.839284 52.3622865 1.719018603 -0.085997 73 74 SH18795 18795 YNL301C_14_64561_63569_INTRON_113_544 intron 26.554316 101.813292 26.554316 76.258976 51.406646 1.711019269 -0.089828 73 75 SH2200 2200 Met2 3' flank 30.334812 81.878989 56.1069005 1.749016278 0.089015 73 76 SH19864 19864 Negative Control 31.753813 93.193482 62.4736475 1.795696863 -0.051086 73 77 SH3879 3879 RNaseP 361-369 + 3' 361 40.224511 96.138427 68.181469 1.833666354 0.08486 73 78 SH3021 3021 Ser2 tRNA 66 80 31.967369 86.503048 59.2352085 1.772579921 0.074188 73 79 SH17529 17529 YJL136C_10_156971_156248_INTRON_25_484 3' exon 32.923759 125.7906 32.923759 93.866841 63.3953 1.802057061 -0.03478 73 80 SH7198 7198 snR64 snR64 56 75 27.962045 73.46745 50.7147475 1.705134268 0.045437 73 81 SH12129 12129 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7531 7549 29.236945 87.263608 58.2502765 1.765297991 -0.058851 73 82 SH20321 20321 YER056C-A spliced 40.611212 95.929991 68.2706015 1.834233729 0.097209 73 83 SH17655 17655 YKL002W_11_437416_438182_INTRON_61_128 5' exon 28.655336 100.125294 28.655336 72.469958 50.562647 1.703829802 0.1057 73 84 SH10131 10131 RUF6 RUF6 501 517 28.57842 79.58102 54.07972 1.733034434 0.006919 73 85 SH7958 7958 snoRNA cluster 2 5' 26.379035 92.751908 26.379035 67.372873 46.875954 1.670950119 0.016303 73 86 SH15682 15682 YBR191W_2_606228_607098_INTRON_12_399 intron 26.47458 97.723884 26.47458 72.249304 49.361942 1.693392237 -0.04379 73 87 SH18658 18658 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.827195 117.567978 28.827195 89.740783 59.283989 1.772937418 -0.121044 73 88 SH13190 13190 MT COX1 Exon4 28.950212 115.023355 28.950212 87.073143 58.0116775 1.763515424 -0.068662 73 89 SH9747 9747 RUF4 RUF4 511 527 29.071028 85.798675 57.4348515 1.759175503 -0.040278 73 90 SH17398 17398 YIL069C_9_232366_231550_INTRON_4_412 intron 33.877581 126.497555 33.877581 93.619974 63.7487775 1.804471861 -0.005023 73 91 SH14764 14764 MT ORF11; tRNA Leu; tRNA Gln ORF11 27.012802 91.09092 27.012802 65.078118 46.04546 1.663186816 0.095278 73 92 SH6784 6784 snR50 3' 26.671023 70.482786 48.5769045 1.686429837 -0.005799 73 93 SH3198 3198 Ser5 3' flank 27.966219 69.715124 48.8406715 1.688781626 0.09603 73 94 SH6277 6277 snR42 snR42 166 185 26.713422 96.216206 61.464814 1.788626572 -0.33075 73 95 SH1357 1357 Ile3 3' flank 28.004205 98.679291 63.341748 1.801690044 -0.306695 73 96 SH2348 2348 Phe3 tRNA 66 80 32.620104 95.570055 64.0950795 1.806824691 -0.079216 73 97 SH20142 20142 YDL108W spliced 865.728914 753.355981 809.5424475 2.908239625 0.187754 73 98 SH2476 2476 Phe5 3' flank 30.408674 83.471203 56.9399385 1.755416994 0.062476 73 99 SH116 116 Arg1 5' flank 30.974044 84.116052 57.545048 1.760007957 0.075227 73 100 SH17934 17934 YLR093C_12_327416_326514_INTRON_17_157 intron 29.025494 112.250437 29.025494 84.224943 56.6252185 1.753009891 -0.020618 73 101 SH1553 1553 Leu4 5' flank 28.770403 74.179092 51.4747475 1.711594225 0.089912 73 102 SH18924 18924 YOL121C_15_92849_92025_INTRON_21_410 intron 26.363479 114.514239 26.363479 89.15076 57.7571195 1.761605526 -0.258773 73 103 SH16318 16318 YDR471W_4_1401759_1402553_INTRON_32_415 intron 133.477697 640.456579 133.477697 507.978882 320.7282895 2.506137268 -1.5742 73 104 SH12755 12755 MT COX1 COX1ai1 207.98935 750.038556 207.98935 543.049206 375.519278 2.574632237 -1.123006 74 2 SH8886 8886 LSR1 / U2 RNA U2 1071 1090 28.673408 82.220252 55.44683 1.743876722 -0.019495 74 3 SH19469 19469 ADH1 30.925629 79.264188 55.0949085 1.741111466 0.159637 74 4 SH4049 4049 SRP RNA SRP RNA 136 153 30.974012 82.68837 56.831191 1.754586758 0.101708 74 5 SH7704 7704 snoRNA cluster1 intergenic/snR77 27.036864 95.424701 27.036864 69.387837 48.2123505 1.683158305 0.035461 74 6 SH7902 7902 snoRNA cluster1 intergenic 25.401143 98.119149 25.401143 73.718006 49.5595745 1.695127569 -0.142812 74 7 SH26 26 Ala1 tRNA 26 40 32.528833 83.73112 58.1299765 1.764400147 0.147875 74 8 SH11738 11738 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5576 5597 30.582336 85.737653 58.1599945 1.764624357 0.028654 74 9 SH1159 1159 His1 tRNA 16 32 33.040534 87.660685 60.3506095 1.780681661 0.097817 74 10 SH2250 2250 Phe1 3' flank 28.519579 82.536278 55.5279285 1.744511472 -0.033471 74 11 SH16243 16243 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 26.012316 97.054852 26.012316 72.042536 49.027426 1.690439093 -0.074963 74 12 SH8777 8777 LSR1 / U2 RNA U2 526 542 27.895229 70.780887 49.338058 1.693182051 0.076577 74 13 SH15715 15715 YBR220C_2_663261_662457_INTRON_302_722 intron/exon 27.884591 100.858447 27.884591 73.973856 50.9292235 1.706967055 0.033503 74 14 SH3985 3985 RNase MRP 3' 25.79908 60.482206 43.140643 1.634886614 0.083202 74 15 SH12523 12523 MT_ORF6 + ORF7 (hypothetical) ORF6/7 27.915777 93.945717 27.915777 67.02994 47.4728585 1.676445383 0.130244 74 16 SH11815 11815 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5961 5976 535.344037 506.903996 521.1240165 2.716941089 0.194295 74 17 SH1373 1373 Leu1 5' flank 27.107541 72.855577 49.981559 1.698809798 -0.006308 74 18 SH17629 17629 YJR094W-A_10_608000_608553_INTRON_3_277 intron 33.586055 124.347785 33.586055 91.76173 62.6738925 1.797086668 0.028302 74 19 SH20360 20360 YER131W spliced 39.009509 104.892989 71.951249 1.857038337 -0.120136 74 20 SH7266 7266 snR65 3' 26.598514 58.927848 42.763181 1.631070003 0.1667 74 21 SH8565 8565 snR19 / U1 RNA U1 321 338 31.731795 75.561354 53.6465745 1.729541996 0.256024 74 22 SH17163 17163 YHR016C_8_138446_136872_INTRON_48_215 intron 29.202389 117.369734 29.202389 89.167345 59.184867 1.772210676 -0.09382 74 23 SH12517 12517 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.709565 98.856142 28.709565 71.146577 49.928071 1.698344787 0.127047 74 24 SH13750 13750 MT COB Exon1 25.945869 92.933175 25.945869 67.987306 46.9665875 1.671789006 -0.024294 74 25 SH21386 21386 Phe1_5 spliced 32.227501 94.469834 63.3486675 1.801737484 -0.066053 74 26 SH20846 20846 YLR048W spliced 30.357587 95.74634 63.0519635 1.799698615 -0.15202 74 27 SH12689 12689 MT ORF 8 (hypothetical) 5' 26.510308 91.772843 26.510308 66.262535 46.3864215 1.66639087 0.041809 74 28 SH3239 3239 Thr1 tRNA 51 67 31.310833 92.011471 61.661152 1.790011634 -0.049086 74 29 SH11302 11302 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3396 3414 35.997742 96.922539 66.4601405 1.822561255 -0.023538 74 30 SH2178 2178 Met2 tRNA 21 33 33.991882 85.194222 59.593052 1.775195628 0.17996 74 31 SH19238 19238 YPL090C_16_378390_377286_INTRON_7_400 intron 27.311267 107.27524 27.311267 80.963973 54.13762 1.733499159 -0.095783 74 32 SH3981 3981 RNase MRP RNaseMRP 321 336 32.069908 79.986294 56.028101 1.748405903 0.19964 74 33 SH16089 16089 YDR025W_4_491510_492319_INTRON_46_384 intron 29.647784 101.603509 29.647784 72.955725 51.3017545 1.710132218 0.163163 74 34 SH127 127 Arg1 11-23 11 23 31.81564 90.27348 61.04456 1.785646968 0.00182 74 35 SH3014 3014 Ser2 tRNA 31 48 28.09615 72.378263 50.2372065 1.701025482 0.068983 74 36 SH4866 4866 snR8 snR8 111 123 27.727336 76.222391 51.9748635 1.715793357 -0.006873 74 37 SH11481 11481 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4291 4304 65.688431 110.780986 88.2347085 1.945639455 0.240557 74 38 SH3187 3187 Ser5 tRNA 56 70 151.69388 186.922345 169.3081125 2.228677768 0.244327 74 39 SH18472 18472 YMR143W_13_551927_552902_INTRON_25_568 intron 26.753851 103.758807 26.753851 78.004956 52.3794035 1.719160548 -0.097359 74 40 SH18449 18449 YMR142C_13_551206_550205_INTRON_5_406 3' exon 33.603274 130.159226 33.603274 97.555952 65.579613 1.816768849 -0.095599 74 41 SH13856 13856 MT COB Cytbi2 26.401477 105.932051 26.401477 80.530574 53.4660255 1.728077901 -0.154244 74 42 SH21627 21627 copy of SH7732 31.488548 86.142218 58.815383 1.769490929 0.060455 74 43 SH14044 14044 MT COB Cytbi4 25.687571 101.674409 25.687571 76.986838 51.3372045 1.710432216 -0.162851 74 44 SH9209 9209 snR6 / U6 RNA 5' 39.751792 95.860344 67.806068 1.831268561 0.081109 74 45 SH9370 9370 RUF1 RUF1 426 443 26.75615 71.269997 49.0130735 1.690311937 -0.01032 74 46 SH13723 13723 MT COB 5' 27.023307 98.057524 27.023307 72.034217 49.528762 1.694857473 -0.001422 74 47 SH16059 16059 YDL219W_4_65243_65766_INTRON_66_136 intron 28.875125 99.065782 28.875125 71.190657 50.032891 1.699255598 0.137526 74 48 SH2450 2450 Phe5 tRNA 21 33 37.281186 90.135929 63.7085575 1.804197772 0.153818 74 49 SH19731 19731 Negative Control 29.730103 88.567121 59.148612 1.771944558 -0.059401 74 50 SH14871 14871 MT tRNA Ser2; tRNA Arg2 3' 26.803805 99.771753 26.803805 73.967948 50.3858765 1.702308818 -0.042548 74 51 SH21134 21134 YNL147W spliced 45.764538 107.104562 76.43455 1.883289713 -0.026437 74 52 SH3592 3592 Val1 5' flank 26.775145 74.428466 50.6018055 1.704166013 -0.050564 74 53 SH9445 9445 RUF2 RUF2 66 78 38.628373 95.660565 67.144469 1.827010244 0.061825 74 54 SH10904 10904 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1406 1426 1864.992981 1495.750174 1680.371578 3.225405327 0.121272 74 55 SH4950 4950 snR9 snR9 156 172 71.302062 116.763149 94.0326055 1.97327847 0.222441 74 56 SH17344 17344 YIL018W_9_316766_317930_INTRON_5_404 intron 30.47435 122.146083 30.47435 92.671733 61.5730415 1.789390607 -0.09639 74 57 SH16334 16334 YDR471W_4_1401759_1402553_INTRON_32_415 3' exon 30.352545 104.528903 30.352545 75.176358 52.7644515 1.722341428 0.177408 74 58 SH16020 16020 YDL189W_4_122079_123590_INTRON_1_99 intron 28.342437 116.191387 28.342437 88.84895 58.5956935 1.767865699 -0.128292 74 59 SH13316 13316 MT COX1 COX1-ai5a 26.481726 97.234004 26.481726 71.752278 49.117002 1.691231851 -0.036646 74 60 SH6891 6891 snR56 86-88 + 3' 86 27.785243 78.677955 53.231599 1.726169512 -0.034688 74 61 SH2389 2389 Phe4 5- flank - tRNA12 12 33.158976 86.628138 59.893557 1.777380106 0.120936 74 62 SH905 905 Glu3 tRNA 36 48 507.254421 502.413531 504.833976 2.703148576 0.1396 74 63 SH5838 5838 snR35 snR35 376 390 44.59017 117.073675 80.8319225 1.907582908 -0.227702 74 64 SH4478 4478 U3b (snR17b) 5' 24.920398 73.607538 49.263968 1.692529389 -0.17817 74 65 SH15937 15937 YDL115C_4_255042_253994_INTRON_1_88 intron 27.361843 112.3056 27.361843 85.943757 56.6528 1.753221379 -0.152058 74 66 SH20245 20245 YDR367W spliced 27.215107 77.706176 52.4606415 1.719833597 -0.061309 74 67 SH6507 6507 snR46 snR46 26 43 26.864419 77.356332 52.1103755 1.716924203 -0.081228 74 68 SH17942 17942 YLR128W_12_398531_399434_INTRON_4_97 5' exon 28.904137 117.007389 28.904137 89.103252 59.0036945 1.770879206 -0.106447 74 69 SH19686 19686 Negative Control 26.984606 77.008117 51.9963615 1.715972954 -0.068301 74 70 SH12324 12324 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.35813 99.240217 27.35813 72.882087 50.1201085 1.700012002 0.011064 74 71 SH18371 18371 YMR079W_13_424988_426058_INTRON_10_165 intron 27.91103 113.902637 27.91103 86.991607 57.4513185 1.7593 -0.126748 74 72 SH1572 1572 Leu4 tRNA-exon/intron 31 50 26.295853 80.024006 53.1599295 1.725584396 -0.155479 74 73 SH9708 9708 RUF4 RUF4 316 332 27.88096 84.507143 56.1940515 1.749690345 -0.099769 74 74 SH20625 20625 YHR101C spliced 30.137613 93.765964 61.9517885 1.792053849 -0.129421 74 75 SH15900 15900 YDL083C_4_307788_306925_INTRON_25_456 intron 28.260885 101.750514 28.260885 74.489629 51.375257 1.710754007 0.052062 74 76 SH20801 20801 YKL157W spliced 29.597642 87.72452 58.661081 1.768350062 -0.050589 74 77 SH16942 16942 YGR027C_7_534779_534126_INTRON_1_312 intron 27.049557 101.66957 27.049557 75.620013 51.334785 1.710411747 -0.046168 74 78 SH11036 11036 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2066 2083 33.92488 78.315129 56.1200045 1.749117697 0.307563 74 79 SH17146 17146 YHR010W_8_126513_127484_INTRON_32_592 3' exon 27.078628 106.495041 27.078628 80.416413 53.7475205 1.730358434 -0.105107 74 80 SH20092 20092 YDL012C spliced 31.29056 82.063981 56.6772705 1.753408927 0.127042 74 81 SH14971 14971 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.005535 100.483191 27.005535 74.477656 50.7415955 1.705364119 -0.034698 74 82 SH10418 10418 RUF8 RUF8 16 33 29.122228 89.165324 59.143776 1.771909048 -0.097464 74 83 SH17098 17098 YHL001W_8_104270_105084_INTRON_130_527 intron 51.567821 151.174927 51.567821 100.607106 76.0874635 1.881313106 0.204133 74 84 SH20207 20207 YDR059C spliced 33.018906 88.913929 60.9664175 1.785090676 0.074981 74 85 SH7438 7438 snR69 91-101 + 3' 91 30.526245 83.40909 56.9676675 1.755628438 0.068793 74 86 SH12899 12899 MT COX1 intronic 34.876785 138.437524 34.876785 104.560739 69.718762 1.843349667 -0.205728 74 87 SH1543 1543 Leu3 3' flank 35.03398 72.303797 53.6688885 1.729722601 0.474168 74 88 SH18123 18123 YLR388W_12_898158_898821_INTRON_1_488 intron 29.784638 115.840316 29.784638 87.055678 58.420158 1.766562727 -0.03032 74 89 SH88 88 Ala2 3' flank 26.707848 71.434479 49.0711635 1.690826355 -0.016012 74 90 SH21396 21396 Pro2_7 spliced 133.988009 170.593541 152.290775 2.182673597 0.251489 74 91 SH13071 13071 MT COX1 Exon3 / cox1ai3 26.917477 97.979797 26.917477 72.06232 49.4898985 1.694516563 -0.009353 74 92 SH7530 7530 snR79 5' - 10 -9 10 28.749146 72.841463 50.7953045 1.705823568 0.106739 74 93 SH6746 6746 snR50 5' 39.137166 86.320337 62.7287515 1.797466644 0.283177 74 94 SH11236 11236 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3066 3082 5983.902687 5490.746162 5737.324425 3.758709408 -0.41481 74 95 SH11265 11265 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3211 3229 37.574987 124.530172 81.0525795 1.908766841 -0.501181 74 96 SH11914 11914 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6456 6473 18553.42471 10661.62352 14607.52411 4.164576612 0.010126 74 97 SH3644 3644 Val2 5' flank 29.973681 70.77124 50.3724605 1.702193165 0.214199 74 98 SH9762 9762 RUF4 RUF4 586 608 30.580252 88.798029 59.6891405 1.775895325 -0.025693 74 99 SH10657 10657 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 171 188 58.429003 109.705183 84.067093 1.92462603 0.147237 74 100 SH7648 7648 snoRNA cluster1 5' 30.837955 101.811398 30.837955 71.973443 51.405699 1.711011269 0.250894 74 101 SH13403 13403 MT COX1 intronic 28.091953 108.125218 28.091953 81.033265 54.562609 1.736895129 -0.043536 74 102 SH14453 14453 MT 21S rRNA 21S rRNA3 2249.457067 7289.473841 2249.457067 5041.016774 3645.236921 3.56172576 -1.552993 74 103 SH20043 20043 YBR189W spliced 1088.05696 3494.106818 2291.081889 3.360040612 -1.920773 74 104 SH15043 15043 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 63.619432 477.215946 63.619432 414.596514 239.107973 2.378594058 -2.140409 75 2 SH5355 5355 snR30 3' 39.48063 93.712499 66.5965645 1.823451826 0.122218 75 3 SH9206 9206 snR6 / U6 RNA 5' 26.82605 79.122247 52.9741485 1.724063985 -0.10652 75 4 SH15310 15310 YAL003W_1_142172_143158_INTRON_81_446 5'exon 27.250112 111.792324 27.250112 85.542212 56.396162 1.751249549 -0.155079 75 5 SH10933 10933 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1551 1569 27.409187 78.38221 52.8956985 1.723420356 -0.056593 75 6 SH8027 8027 snoRNA cluster 2 snR55 31.883514 110.050751 31.883514 79.167237 55.5253755 1.744491504 0.207761 75 7 SH11480 11480 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4286 4301 7426.172907 3582.550115 5504.361511 3.740706949 0.542464 75 8 SH264 264 Arg4 5' flank 25.612354 66.698398 46.155376 1.664222293 -0.029795 75 9 SH8620 8620 snR19 / U1 RNA U1 596 610 32.263998 85.067203 58.6656005 1.76838352 0.112444 75 10 SH4859 4859 snR8 snR8 76 90 85.274932 146.163375 115.7191535 2.063405248 0.000991 75 11 SH18041 18041 YLR333C_12_796335_795573_INTRON_1_423 intron 29.094065 120.882571 29.094065 92.788506 60.9412855 1.784911611 -0.160375 75 12 SH10638 10638 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 76 89 48.443784 106.349916 77.39685 1.888723286 0.037724 75 13 SH18143 18143 YLR406C_12_931752_931062_INTRON_58_406 intron 29.349608 107.18786 29.349608 78.838252 54.09393 1.733148535 0.066478 75 14 SH456 456 Asp1 3' flank 27.655929 79.536063 53.595996 1.729132346 -0.054339 75 15 SH10465 10465 RUF8 RUF8 251 270 28.639305 102.379832 65.5095685 1.816304739 -0.333632 75 16 SH13040 13040 MT COX1 COX1ai2 29.142495 137.192078 29.142495 109.049583 69.096039 1.839453152 -0.443503 75 17 SH5376 5376 snR31 5' 28.638727 63.175232 45.9069795 1.661878719 0.236316 75 18 SH19500 19500 YPT1 37.583226 95.902173 66.7426995 1.824403768 0.034055 75 19 SH18819 18819 YNL302C_14_62942_61957_INTRON_21_571 intron 27.985525 114.076046 27.985525 87.090521 57.538023 1.759954936 -0.122864 75 20 SH15384 15384 YBL027W_2_168385_169338_INTRON_3_386 3' exon 29.342765 123.050636 29.342765 94.707871 62.025318 1.792569 -0.180656 75 21 SH15687 15687 YBR191W_2_606228_607098_INTRON_12_399 intron 30.142037 119.538911 30.142037 90.396874 60.2694555 1.780097268 -0.072617 75 22 SH18657 18657 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.871399 116.869771 27.871399 89.998372 58.9348855 1.770372444 -0.170607 75 23 SH7351 7351 snR68 5' 27.554599 70.145356 48.8499775 1.688864368 0.061571 75 24 SH2984 2984 Ser1 3' flank 29.343735 87.73989 58.5418125 1.767466164 -0.062392 75 25 SH15759 15759 YCR031C_3_178212_177492_INTRON_8_314 intron 28.910704 114.547596 28.910704 86.636892 57.773798 1.761730919 -0.06272 75 26 SH21424 21424 Trp1 spliced 56.300116 116.698676 86.499396 1.937013075 -0.007654 75 27 SH9649 9649 RUF4 RUF4 21 33 31.927548 81.916476 56.922012 1.755280243 0.156798 75 28 SH1310 1310 Ile3 5' flank 27.340597 73.157577 50.249087 1.701128175 0.006209 75 29 SH15693 15693 YBR220C_2_663261_662457_INTRON_302_722 5' exon 31.954489 118.654635 31.954489 87.700146 59.8273175 1.776899531 0.052387 75 30 SH15124 15124 MT tRNA Phe 5' 27.368713 107.837416 27.368713 81.468703 54.418708 1.735748227 -0.098046 75 31 SH13895 13895 MT COB intronic 27.33156 103.87172 27.33156 77.54016 52.43586 1.719628395 -0.051123 75 32 SH5464 5464 snR32 5' 27.181916 63.818317 45.5001165 1.658012509 0.126234 75 33 SH8870 8870 LSR1 / U2 RNA U2 991 1006 27.162478 86.2542 56.708339 1.753646927 -0.169447 75 34 SH17474 17474 YJL001W_10_434855_435618_INTRON_66_181 intron 28.28136 107.690064 28.28136 80.408704 54.345032 1.735159849 -0.023128 75 35 SH3932 3932 RNase MRP RNaseMRP 76 92 31.49403 78.823053 55.1585415 1.741612774 0.198051 75 36 SH14210 14210 MT ATP9 5' 26.525462 101.916737 26.525462 76.391275 51.4583685 1.711456013 -0.093585 75 37 SH1690 1690 Leu6 tRNA 16 30 50.899232 115.858181 83.3787065 1.921055153 -0.088719 75 38 SH19094 19094 YOR312C_15_901173_900242_INTRON_2_427 intron 26.738456 103.882665 26.738456 78.144209 52.4413325 1.719673718 -0.10023 75 39 SH1906 1906 Lys1 5' flank - tRNA2 2 29.469834 87.447919 58.4588765 1.766850465 -0.051496 75 40 SH17598 17598 YJL191W_10_73786_74610_INTRON_11_418 3' exon 29.379 98.980804 29.379 70.601804 49.990402 1.698886629 0.178812 75 41 SH16735 16735 YGL076C_7_365994_364333_INTRON_565_1032 intron 32.347292 130.207985 32.347292 98.860693 65.6039925 1.81693027 -0.155137 75 42 SH17111 17111 YHR001W-A_8_107819_108115_INTRON_7_69 intron/exon 32.958139 114.448153 32.958139 82.490014 57.7240765 1.761356994 0.188525 75 43 SH20166 20166 YDL136W spliced 32.797769 93.245322 63.0215455 1.799489049 -0.024567 75 44 SH2652 2652 Pro4 5' flank 28.596627 78.65521 53.6259185 1.729374744 0.019835 75 45 SH5702 5702 snR34 snR34 431 448 26.686868 75.368983 51.0279255 1.707807913 -0.068974 75 46 SH13882 13882 MT COB intronic 26.521831 96.291275 26.521831 70.769444 48.6456375 1.687043899 -0.020497 75 47 SH6189 6189 snR40 snR40 6 22 361.355728 552.916174 457.135951 2.660045377 -0.447938 75 48 SH11349 11349 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3631 3647 71.622882 117.849109 94.7359955 1.976515023 0.209378 75 49 SH15776 15776 YDL012C_4_431513_431104_INTRON_46_131 intron 27.612002 102.410601 27.612002 75.798599 51.7053005 1.713535066 -0.009145 75 50 SH13962 13962 MT COB Cytbi3 29.602478 113.11754 29.602478 84.515062 57.05877 1.756322405 0.007288 75 51 SH3601 3601 Val1 tRNA 1 15 56.760282 127.64118 92.200731 1.964734364 -0.172597 75 52 SH3979 3979 RNase MRP RNaseMRP 311 327 27.165719 69.073062 48.1193905 1.682320118 0.048981 75 53 SH20053 20053 YBR220C spliced 27.481232 80.928827 54.2050295 1.734039585 -0.083659 75 54 SH6952 6952 snR58 3' 31.434076 73.694511 52.5642935 1.720690832 0.26331 75 55 SH18111 18111 YLR367W_12_855877_857316_INTRON_698_1180 intron 28.696361 96.174281 28.696361 68.47792 48.5871405 1.68652134 0.162846 75 56 SH4612 4612 snR3 5' 26.715105 64.599775 45.65744 1.659511557 0.081487 75 57 SH17789 17789 YKL186C_11_93537_92746_INTRON_71_233 exon/intron 31.36617 108.945508 31.36617 78.579338 54.972754 1.740147495 0.194976 75 58 SH10563 10563 RUF8 RUF8 741 757 33.753645 78.398845 56.076245 1.748778925 0.299138 75 59 SH17282 17282 YHR141C_8_382752_381991_INTRON_5_445 intron 31.615858 124.18734 31.615858 93.571482 62.59367 1.796530416 -0.063028 75 60 SH1535 1535 Leu3 3' flank 31.789368 82.905905 57.3476365 1.758515524 0.13242 75 61 SH12773 12773 MT COX1 COX1ai1 27.059145 94.2484 27.059145 68.189255 47.6242 1.677827693 0.053768 75 62 SH14491 14491 MT 21S rRNA 21S rRNA3 26.399502 94.4759 26.399502 69.076398 47.73795 1.678863765 -0.006165 75 63 SH17249 17249 YHR097C_8_298611_297387_INTRON_126_249 intron 27.61021 113.417731 27.61021 86.807521 57.2088655 1.757463335 -0.145045 75 64 SH14622 14622 MT 21S rRNA Sce1 endonuc 33.491618 115.993101 33.491618 83.501483 58.4965505 1.767130257 0.191163 75 65 SH11324 11324 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3506 3522 25049.93056 13863.69322 19456.81189 4.28907168 -0.012982 75 66 SH151 151 Arg1 3' flank 28.519403 79.299319 53.909361 1.731664184 0.006574 75 67 SH11762 11762 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5696 5714 47.245646 93.229173 70.2374095 1.846568486 0.282278 75 68 SH20634 20634 YHR141C spliced 30.291004 88.835892 59.563448 1.77497983 -0.039072 75 69 SH340 340 Arg5 tRNA 36 53 30.4994 88.565295 59.5323475 1.774753008 -0.025176 75 70 SH7795 7795 snoRNA cluster1 snR75 35.143587 123.871453 35.143587 89.727866 62.4357265 1.79543317 0.112563 75 71 SH3326 3326 Thr3 5' flank 27.25346 71.488373 49.3709165 1.693471189 0.02221 75 72 SH8352 8352 snoRNA cluster4 3' 39.323018 138.243547 39.323018 99.920529 69.6217735 1.842745082 -0.013378 75 73 SH11496 11496 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4366 4383 113.149181 150.327461 131.738321 2.119712124 0.268567 75 74 SH11080 11080 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2286 2303 9877.47205 6076.66118 7977.066615 3.901843219 0.077401 75 75 SH11599 11599 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4881 4898 14969.34796 9968.15255 12468.75025 4.095822926 -0.163577 75 76 SH19970 19970 YBL072C spliced 63.32888 122.249885 92.7893825 1.967498285 0.0178 75 77 SH8273 8273 snoRNA cluster4 snR67 38.763854 138.121408 38.763854 100.357554 69.560704 1.842363969 -0.034163 75 78 SH5846 5846 snR35 snR35 416 433 27.827472 85.476146 56.651809 1.753213782 -0.114802 75 79 SH7832 7832 snoRNA cluster1 intergenic/snR74 32.906199 124.24065 32.906199 92.334451 62.620325 1.796715317 -0.001812 75 80 SH1642 1642 Leu5 tRNA 76 92 496.502951 632.336859 564.419905 2.751602321 -0.256448 75 81 SH17498 17498 YJL041W_10_365480_368069_INTRON_2_119 intron 27.141692 103.739204 27.141692 77.597512 52.369602 1.719079273 -0.064998 75 82 SH2897 2897 Pro8 tRNA 6 22 63.13567 129.957835 96.5467525 1.98473767 -0.100949 75 83 SH15329 15329 YAL003W_1_142172_143158_INTRON_81_446 intron 28.916314 111.641849 28.916314 83.725535 56.3209245 1.750669775 -0.021765 75 84 SH21694 21694 copy of SH10659 30.782231 80.962415 55.872323 1.747196728 0.126027 75 85 SH8228 8228 snoRNA cluster 3; 3' 30.483204 111.468289 30.483204 81.985085 56.2341445 1.750000093 0.093543 75 86 SH9751 9751 RUF4 RUF4 531 545 37.033091 96.915982 66.9745365 1.825909717 0.000232 75 87 SH13099 13099 MT COX1 COX1ai3 28.115244 104.589738 28.115244 77.474494 52.794869 1.722591717 0.002991 75 88 SH20662 20662 YIL052C spliced 32.98762 95.244653 64.1161365 1.806967345 -0.062714 75 89 SH9335 9335 RUF1 RUF1 251 268 28.703685 69.019582 48.8616335 1.688967982 0.155777 75 90 SH10680 10680 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 286 299 105.517578 171.60064 138.559109 2.141635082 -0.040246 75 91 SH7120 7120 snR63 snR63 106 124 28.838531 69.82472 49.3316255 1.693125426 0.153674 75 92 SH3715 3715 Val3 tRNA 56 68 33.04127 108.728191 70.8847305 1.850552693 -0.330824 75 93 SH17097 17097 YHL001W_8_104270_105084_INTRON_130_527 intron 30.166601 126.899817 30.166601 97.733216 63.9499085 1.805839927 -0.19224 75 94 SH876 876 Glu2 3' flank 29.830028 85.971969 57.9009985 1.762686053 -0.008904 75 95 SH21109 21109 YNL069C spliced 27.646747 72.099537 49.873142 1.69786673 0.041633 75 96 SH10291 10291 RUF7 RUF7 66 83 30.140162 84.365667 57.2529145 1.7577976 0.034117 75 97 SH18836 18836 YNL302C_14_62942_61957_INTRON_21_571 intron 28.269587 102.472194 28.269587 75.202607 51.736097 1.713793662 0.043105 75 98 SH4442 4442 telomerase RNA telomerase 1246 1263 28.526172 75.294708 51.91044 1.71525471 0.058904 75 99 SH13448 13448 MT COX1 intronic 28.45922 94.140954 28.45922 66.681734 47.570477 1.677337506 0.172372 75 100 SH17724 17724 YKL156W_11_158616_159214_INTRON_4_353 intron 30.26062 117.048695 30.26062 87.788075 59.0243475 1.771031195 -0.02206 75 101 SH7719 7719 snoRNA cluster1 snR77 29.549743 98.793593 29.549743 70.24385 49.8967965 1.698072664 0.194848 75 102 SH6714 6714 snR49 snR49 96 115 1668.259497 3724.87268 2696.566089 3.430811069 -1.463504 75 103 SH15279 15279 MT 9S rRNA 9S 1486.619525 4793.252852 1486.619525 3307.633327 2397.126426 3.37969094 -1.42618 75 104 SH15480 15480 YBL091C-A_2_46858_46559_INTRON_35_122 3' exon 717.923152 3219.763365 717.923152 2502.840213 1610.381683 3.206928822 -1.943862 76 2 SH17065 17065 YGR214W_7_920570_921783_INTRON_91_545 intron 27.672953 114.25141 27.672953 87.578457 57.625705 1.760616252 -0.149621 76 3 SH10312 10312 RUF7 RUF7 171 193 26.546068 64.096124 45.321096 1.656300404 0.077577 76 4 SH12155 12155 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7661 7678 740.022423 785.026892 762.5246575 2.882253892 -0.082279 76 5 SH21825 21825 copy of SH16120 29.473649 94.255474 61.8645615 1.791441939 -0.167292 76 6 SH8238 8238 snoRNA cluster 3; 3' 36.018498 113.434915 36.018498 78.416417 57.2174575 1.757528556 0.385714 76 7 SH4594 4594 U3b (snR17b) 3' 29.636017 79.345279 54.490648 1.736321973 0.078357 76 8 SH1793 1793 Leu8 5' flank - tRNA8 8 34.388713 101.367507 67.87811 1.831729741 -0.153679 76 9 SH7754 7754 snoRNA cluster1 snR76 34.460402 126.419625 34.460402 92.959223 63.7098125 1.804206327 0.02394 76 10 SH7179 7179 snR64 5' 27.252749 74.13543 50.6940895 1.704957327 -0.01273 76 11 SH9145 9145 snR7 U5 RNA 5' - 8 -4 8 39.07996 93.835835 66.4578975 1.822546598 0.111113 76 12 SH7283 7283 snR66 5' 28.129116 86.152828 57.140972 1.756947624 -0.102383 76 13 SH13976 13976 MT COB cytbi3/intron 26.525788 95.638546 26.525788 70.112758 48.319273 1.684120391 -0.011264 76 14 SH12984 12984 MT COX1 COX1ai2 31.214494 106.850088 31.214494 76.635594 53.925044 1.731790508 0.210921 76 15 SH13638 13638 MT ATP6 ATP6 28.921252 116.973 28.921252 89.051748 58.9865 1.770752628 -0.104761 76 16 SH11499 11499 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4381 4394 34.793972 100.936206 67.865089 1.831646423 -0.135006 76 17 SH11344 11344 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3606 3619 100.63461 119.782385 110.2084975 2.042215082 0.538446 76 18 SH19710 19710 Negative Control 37.827741 86.83357 62.3306555 1.794701694 0.242053 76 19 SH17836 17836 YKR094C_11_618384_617630_INTRON_9_376 intron 26.211806 113.247705 26.211806 88.035899 57.1238525 1.756817489 -0.257045 76 20 SH3214 3214 Thr1 5' flank 27.434078 71.470283 49.4521805 1.694185446 0.035173 76 21 SH13050 13050 MT COX1 COX1ai2 28.060674 105.62439 28.060674 78.563716 53.312195 1.726826564 -0.014648 76 22 SH20681 20681 YIL111W spliced 28.137902 68.763749 48.4508255 1.685301181 0.121002 76 23 SH16811 16811 YGL178W_7_167356_170575_INTRON_4_643 5' exon 27.905023 113.002378 27.905023 86.097355 57.001189 1.755883915 -0.116808 76 24 SH5743 5743 snR35 5' 32.340602 81.467187 56.9038945 1.755141991 0.182511 76 25 SH11445 11445 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4111 4127 53.224103 103.338759 78.281431 1.893658756 0.178996 76 26 SH2390 2390 Phe4 tRNA 1 15 156.316777 206.371499 181.344138 2.258503521 0.113528 76 27 SH14870 14870 MT tRNA Ser2; tRNA Arg2 3' 27.795168 95.587517 27.795168 68.792349 48.2937585 1.683891006 0.097001 76 28 SH2887 2887 Pro8 5' flank 27.701333 84.968333 56.334833 1.750777011 -0.117396 76 29 SH1469 1469 Leu2 3' flank 29.786059 76.20607 52.9960645 1.72424362 0.128289 76 30 SH20089 20089 YDL012C spliced 27.264364 79.557032 53.410698 1.727628254 -0.08147 76 31 SH377 377 Asn1 5' flank 26.987373 73.183551 50.085462 1.699711684 -0.019174 76 32 SH15820 15820 YDL064W_4_337486_338069_INTRON_39_148 exon/intron 52.507255 169.11375 52.507255 117.606495 85.056875 1.929709423 -0.088841 76 33 SH14385 14385 MT ORF9 and ORF10 (hypothetical) 3' 26.678817 100.294404 26.678817 74.615587 50.647202 1.704555458 -0.059915 76 34 SH10519 10519 RUF8 RUF8 521 542 24.483195 78.375494 51.4293445 1.711210989 -0.272483 76 35 SH19709 19709 Negative Control 33.551736 86.566044 60.05889 1.778577301 0.137805 76 36 SH5276 5276 snR30 snR30 231 247 28.883656 81.044959 54.9643075 1.740080761 0.008686 76 37 SH15975 15975 YDL136W_4_217600_218367_INTRON_4_408 intron 28.936877 97.52598 28.936877 69.589103 49.26299 1.692520768 0.163474 76 38 SH20961 20961 YML025C spliced 27.084032 81.22521 54.154621 1.733635521 -0.114751 76 39 SH2045 2045 Lys3 3' flank 27.502344 84.974647 56.2384955 1.750033694 -0.131054 76 40 SH9338 9338 RUF1 RUF1 266 283 30.98383 83.697879 57.3408545 1.758464161 0.08336 76 41 SH17018 17018 YGR148C_7_788173_787307_INTRON_1_392 intron 29.390015 102.896119 29.390015 74.506104 51.9480595 1.715569329 0.125656 76 42 SH3068 3068 Ser3 tRNA 36 54 33.402893 95.728122 64.5655075 1.810000569 -0.062303 76 43 SH18561 18561 YMR292W_13_854795_855293_INTRON_23_104 intron 26.305625 95.568977 26.305625 70.263352 48.2844885 1.683807635 -0.029374 76 44 SH18180 18180 YLR448W_12_1028848_1029762_INTRON_16_399 intron 28.458689 115.450118 28.458689 87.991429 58.225059 1.765109937 -0.10781 76 45 SH21598 21598 copy of SH6474 28.392522 84.214894 56.303708 1.750536997 -0.062042 76 46 SH8360 8360 snoRNA cluster4 3' 28.017528 114.09504 28.017528 87.077512 57.54752 1.760026613 -0.120561 76 47 SH21854 21854 copy of SH17799 43.302312 96.349107 69.8257095 1.844015357 0.141007 76 48 SH5182 5182 snR13 snR13 66 82 34.185911 84.725425 59.455668 1.774193263 0.196114 76 49 SH9510 9510 RUF3 5' 30.249869 73.060896 51.6553825 1.713115582 0.199601 76 50 SH3215 3215 Thr1 5' flank 28.215051 84.236465 56.225758 1.749935319 -0.074113 76 51 SH20398 20398 YFR024C-A spliced 29.117679 73.081994 51.0998365 1.708419511 0.127438 76 52 SH9716 9716 RUF4 RUF4 356 372 29.989666 93.313736 61.651701 1.789945063 -0.128528 76 53 SH18517 18517 YMR201C_13_667043_665844_INTRON_28_111 3' exon 32.256359 129.883674 32.256359 98.627315 65.441837 1.815855482 -0.152744 76 54 SH11144 11144 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2606 2623 11550.97151 7222.210822 9386.591165 3.972507902 0.008064 76 55 SH4800 4800 snR5 snR5 171 187 31.38404 81.963113 56.6735765 1.753380621 0.132937 76 56 SH1032 1032 Gly2 3' flank 29.656788 87.142507 58.3996475 1.766410226 -0.03762 76 57 SH11613 11613 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4951 4964 94.860338 149.968921 122.4146295 2.087833322 0.072676 76 58 SH1757 1757 Leu7 81-84 + 3' flank 81 29.715179 72.410275 51.062727 1.708104005 0.174955 76 59 SH5705 5705 snR34 snR34 446 465 27.255976 71.355393 49.3056845 1.692896992 0.024174 76 60 SH15973 15973 YDL136W_4_217600_218367_INTRON_4_408 exon/intron 31.981375 133.318404 31.981375 102.337029 67.159202 1.827105527 -0.23504 76 61 SH12675 12675 MT tRNA Trp 5' 27.392238 97.029019 27.392238 70.636781 49.0145095 1.690324661 0.043491 76 62 SH5105 5105 snR11 snR11 126 145 29.25069 86.734327 57.9925085 1.763371895 -0.048811 76 63 SH672 672 Gln2 3' flank 25.969146 80.812311 53.3907285 1.727465847 -0.18885 76 64 SH17947 17947 YLR128W_12_398531_399434_INTRON_4_97 intron 40.557853 136.995896 40.557853 97.438043 68.997948 1.838836175 0.063954 76 65 SH10138 10138 RUF6 RUF6 536 548 29.034353 81.856894 55.4456235 1.743867272 0.00851 76 66 SH17920 17920 YLR061W_12_263195_263949_INTRON_13_401 3' exon 35.113708 127.545367 35.113708 93.431659 64.2726835 1.808026433 0.029698 76 67 SH19104 19104 YOR312C_15_901173_900242_INTRON_2_427 intron 34.847075 130.860898 34.847075 97.013823 65.930449 1.819086033 -0.053217 76 68 SH5373 5373 snR31 5' 28.553854 73.876212 51.215033 1.709397457 0.079773 76 69 SH9882 9882 RUF5-1 RUF5-1 216 230 30.636655 80.135761 55.386208 1.743401632 0.130999 76 70 SH20306 20306 YER003C spliced 45.808467 105.553627 75.681047 1.878987132 0.003971 76 71 SH15965 15965 YDL130W_4_229906_230527_INTRON_115_415 intron 24.894895 97.243548 24.894895 73.348653 49.121774 1.691274043 -0.176761 76 72 SH2165 2165 Met2 5' flank 26.537063 77.21018 51.8736215 1.714946569 -0.102975 76 73 SH15259 15259 MT 9S rRNA 5' 25.996863 94.673757 25.996863 69.676894 47.8368785 1.679762833 -0.044069 76 74 SH13194 13194 MT COX1 Exon4 31.161872 106.379826 31.161872 76.217954 53.689913 1.7298927 0.213213 76 75 SH11494 11494 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4356 4373 146.284264 181.950068 164.117166 2.215154009 0.246718 76 76 SH3740 3740 Val4 5' flank 26.349556 79.755757 53.0526565 1.724707135 -0.148273 76 77 SH764 764 Gln4 3' flank 28.451253 71.308977 49.880115 1.697927446 0.107453 76 78 SH6048 6048 snR37 snR37 156 175 30.793644 89.195082 59.994363 1.778110447 -0.023287 76 79 SH19627 19627 RNA14 2.2 26.536672 72.125302 49.330987 1.693119805 -0.03763 76 80 SH3829 3829 RNaseP RNaseP 111 123 33.792901 90.976524 62.3847125 1.795078178 0.051001 76 81 SH5425 5425 snR31 snR31 191 207 29.43498 85.437798 57.436389 1.759187128 -0.017105 76 82 SH5983 5983 snR36 3' 27.075577 75.472026 51.2738015 1.709895518 -0.042437 76 83 SH21158 21158 YNL301C spliced 29.160063 83.705056 56.4325595 1.751529748 -0.005704 76 84 SH20491 20491 YGL251C spliced 33.665708 89.283442 61.474575 1.788695535 0.085925 76 85 SH2462 2462 Phe5 81-91 + 3' flank 81 28.991306 89.12662 59.058963 1.771285817 -0.102823 76 86 SH14325 14325 MT VAR1 includes 5’ processing site VAR1 26.544219 98.643556 26.544219 73.099337 49.821778 1.697419222 -0.049955 76 87 SH1980 1980 Lys2 3' flank 30.97306 93.20381 62.088435 1.793010713 -0.083521 76 88 SH18070 18070 YLR344W_12_819312_820142_INTRON_20_466 intron 71.927117 198.332568 71.927117 127.405451 99.666284 1.998548266 0.069761 76 89 SH2212 2212 Phe1 5' flank 28.53147 98.358335 63.4449025 1.802396734 -0.27669 76 90 SH5930 5930 snR36 snR36 106 121 42.328195 100.58837 71.4582825 1.854052574 0.033976 76 91 SH18467 18467 YMR143W_13_551927_552902_INTRON_25_568 intron 26.200545 106.664457 26.200545 81.463912 53.8322285 1.731042359 -0.180176 76 92 SH16938 16938 YGR027C_7_534779_534126_INTRON_1_312 intron 28.333367 96.042774 28.333367 68.709407 48.521387 1.685933207 0.135092 76 93 SH4750 4750 snR5 5' 5215.677164 3164.893996 4190.28558 3.622243622 0.278876 76 94 SH19311 19311 YPL198W_16_173151_174701_INTRON_12_420 intron 27.973938 85.005479 27.973938 58.031541 43.0027395 1.633496123 0.276515 76 95 SH1820 1820 Leu8 3' flank 28.10964 104.603865 66.3567525 1.821885123 -0.391863 76 96 SH7486 7486 snR71 snR71 46 66 28.300039 92.47218 60.3861095 1.78093705 -0.192128 76 97 SH14499 14499 MT 21S rRNA 21S rRNA3 595.995762 1222.420803 595.995762 627.425041 611.7104015 2.786545865 -0.008491 76 98 SH16103 16103 YDR059C_4_569765_569229_INTRON_48_137 3' exon 32.152404 143.840011 32.152404 112.687607 72.4200055 1.859858553 -0.427037 76 99 SH3821 3821 RNaseP RNaseP 71 87 30.772993 86.905871 58.839432 1.769668472 0.016036 76 100 SH9069 9069 snR14 / U4 RNA 5' 27.783928 78.61194 53.197934 1.725894766 -0.033937 76 101 SH10166 10166 RUF6 RUF6 676 688 44.935745 105.362174 75.1489595 1.875922972 -0.008833 76 102 SH13666 13666 MT ATP6 ATP6 1176.58125 3991.991497 1176.58125 2816.410247 1996.495749 3.30026839 -1.478658 76 103 SH21738 21738 copy of SH12343 1440.151257 2895.214647 2167.682952 3.335995762 -1.257471 76 104 SH19067 19067 YOR293W_15_867094_867848_INTRON_53_489 intron 107.753923 253.824686 107.753923 147.070763 127.412343 2.105211502 0.25137 77 2 SH10616 10616 RUF8 3' 42.079394 101.04067 71.560032 1.854670526 0.019823 77 3 SH5418 5418 snR31 snR31 156 172 26.898297 74.782668 50.8404825 1.706209664 -0.046283 77 4 SH18513 18513 YMR201C_13_667043_665844_INTRON_28_111 intron 26.639966 101.387338 26.639966 75.747372 51.193669 1.709216256 -0.077167 77 5 SH12402 12402 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.65918 139.423197 35.65918 104.764017 70.2115985 1.846408861 -0.191481 77 6 SH12597 12597 MT_15S MT_15S 27.22644 99.172525 27.22644 72.946085 50.0862625 1.699718625 0.00093 77 7 SH2371 2371 Phe4 5' flank 27.604163 74.35189 50.9780265 1.707383019 0.009146 77 8 SH7423 7423 snR69 snR69 16 32 30.380377 85.180267 57.780322 1.761779958 0.029876 77 9 SH20890 20890 YLR275W spliced 26.158368 73.433512 49.79594 1.697193935 -0.082531 77 10 SH5902 5902 snR36 5' 25.562848 75.730447 50.6466475 1.704550703 -0.156435 77 11 SH19840 19840 Negative Control 30.95517 84.678485 57.8168275 1.762054258 0.064102 77 12 SH20849 20849 YLR048W spliced 41.104985 87.73025 64.4176175 1.809004658 0.291452 77 13 SH20322 20322 YER056C-A spliced 51.472783 103.315065 77.393924 1.888706867 0.14957 77 14 SH17825 17825 YKR057W_11_551293_551878_INTRON_25_346 intron/exon 28.479464 116.589888 28.479464 89.110424 58.794944 1.769339981 -0.126382 77 15 SH508 508 Asp2 3' flank 30.389931 65.117652 47.7537915 1.679007859 0.321556 77 16 SH3491 3491 Tyr1 5' flank - tRNA10 10 28.156088 83.090418 55.623253 1.745256384 -0.06434 77 17 SH21907 21907 copy of SH19402 36.98713 73.312049 55.1495895 1.741542284 0.525356 77 18 SH6460 6460 snR45 snR45 146 165 26.351196 71.623344 48.98727 1.690083237 -0.044436 77 19 SH17077 17077 YGR225W_7_945138_946919_INTRON_1184_1276 intron 28.725381 109.985902 28.725381 82.260521 55.492951 1.74423782 -0.016573 77 20 SH8578 8578 snR19 / U1 RNA U1 386 405 27.355829 78.453607 52.904718 1.723494404 -0.061176 77 21 SH6082 6082 snR37 snR37 326 342 30.048092 74.12063 52.084361 1.71670734 0.172573 77 22 SH11544 11544 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4606 4621 2894.302966 2161.405641 2527.854304 3.402752039 0.115663 77 23 SH17853 17853 YKR095W-A_11_625432_625839_INTRON_39_113 exon/intron 32.383748 116.681371 32.383748 85.297623 58.8406855 1.769677724 0.113217 77 24 SH4813 4813 snR5 3' 30.038545 75.798738 52.9186415 1.723608687 0.149559 77 25 SH12556 12556 MT_15S 5' / MT_15S 30.172635 106.652939 30.172635 77.480304 53.8264695 1.730995895 0.135983 77 26 SH4524 4524 U3b (snR17b) U3b 176 192 30.295262 82.817643 56.5564525 1.752482161 0.069635 77 27 SH1641 1641 Leu5 tRNA-intron/exon 71 87 101.208897 231.292802 166.2508495 2.220763873 -0.59852 77 28 SH7550 7550 snR79 3' 27.308883 78.687605 52.998244 1.72426148 -0.067394 77 29 SH14918 14918 MT tRNA Tyr tRNA 29.065254 101.468968 29.065254 73.403714 51.234484 1.709562367 0.119645 77 30 SH15437 15437 YBL072C_2_89435_88518_INTRON_1_308 intron 26.51473 95.729288 26.51473 70.214558 48.364644 1.684527995 -0.013459 77 31 SH18982 18982 YOR096W_15_505793_506766_INTRON_145_545 intron 29.861283 117.418277 29.861283 88.556994 59.2091385 1.772388742 -0.053331 77 32 SH15321 15321 YAL003W_1_142172_143158_INTRON_81_446 intron 125.760699 295.538022 125.760699 170.777323 148.269011 2.171050391 0.174411 77 33 SH12790 12790 MT COX1 COX1ai1 28.767595 117.530409 28.767595 89.762814 59.2652045 1.772799787 -0.124194 77 34 SH21460 21460 copy of SH730 49.64892 107.344275 78.4965975 1.894850832 0.041129 77 35 SH1070 1070 Gly3 3' flank 26.644529 81.375602 54.0100655 1.732474704 -0.147429 77 36 SH3914 3914 RNase MRP 5' - 4 4 26.822752 73.67584 50.249296 1.701129982 -0.03739 77 37 SH18742 18742 YNL162W_14_331319_332151_INTRON_5_516 intron 66.078058 178.282629 66.078058 113.204571 89.6413145 1.952508216 0.205472 77 38 SH6245 6245 snR42 snR42 6 23 31.987608 67.587219 49.7874135 1.697119565 0.382814 77 39 SH13299 13299 MT COX1 COX1-ai5a 30.066017 123.227146 30.066017 94.161129 62.113573 1.793186512 -0.13911 77 40 SH20498 20498 YGR001C spliced 30.259779 84.07041 57.1650945 1.757130926 0.044841 77 41 SH10004 10004 RUF5-1 3' 27.683831 77.159587 52.421709 1.719511175 -0.022067 77 42 SH12098 12098 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7376 7394 27.162218 75.614683 51.3884505 1.710865523 -0.038096 77 43 SH1057 1057 Gly3 tRNA 21 37 40.374816 95.779623 68.0772195 1.833001809 0.095641 77 44 SH19655 19655 SIR1 2.2 28.45735 69.248808 48.853079 1.688891941 0.135997 77 45 SH17183 17183 YHR021C_8_148660_147862_INTRON_4_553 intron 43.982822 153.989692 43.982822 111.00687 77.494846 1.88927282 -0.133058 77 46 SH21541 21541 copy of SH4151 27.835074 78.431739 53.1334065 1.72536766 -0.028174 77 47 SH11958 11958 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6676 6689 561.831862 486.382177 524.1070195 2.719419976 0.322455 77 48 SH8947 8947 snR17a / U3a U3a 21 40 30.288207 84.235962 57.2620845 1.757867154 0.043055 77 49 SH2657 2657 Pro4 5' flank 26.257834 69.555833 47.9068335 1.680397466 -0.023164 77 50 SH8146 8146 snoRNA cluster 3; intergenic 28.678728 105.5406 28.678728 77.861872 53.2703 1.726485143 0.035386 77 51 SH11093 11093 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2351 2364 30.785608 88.192465 59.4890365 1.774436935 -0.006149 77 52 SH1186 1186 His1 3' flank 32.763447 91.888125 62.325786 1.794667764 0.004312 77 53 SH17 17 Ala1 5' flank 30.441799 93.444012 61.9429055 1.791991573 -0.110659 77 54 SH4582 4582 U3b (snR17b) 3' 30.914901 73.363247 52.139074 1.717163314 0.236441 77 55 SH2129 2129 Met1 tRNA 31 48 30.630838 87.500805 59.0658215 1.771336249 -0.000715 77 56 SH4729 4729 snR4 181-186 + 3' 181 30.16103 76.937305 53.5491675 1.728752723 0.142299 77 57 SH14019 14019 MT COB Exon4 27.980819 101.913083 27.980819 74.932264 51.4565415 1.711440593 0.027365 77 58 SH15277 15277 MT 9S rRNA 9S 27.744202 104.841788 27.744202 78.097586 52.920894 1.723627172 -0.030061 77 59 SH10916 10916 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1466 1481 1713.748076 1254.57522 1484.161648 3.171481205 0.285702 77 60 SH6190 6190 snR40 snR40 11 27 34.285506 97.074458 65.679982 1.817433025 -0.068372 77 61 SH14680 14680 MT 21S rRNA 21S rRNA4 27.366468 97.175458 27.366468 70.80899 49.087729 1.69097294 0.039342 77 62 SH20507 20507 YGR027C spliced 27.129214 80.878845 54.0040295 1.732426166 -0.107331 77 63 SH19349 19349 YPL249C-A_16_76239_75699_INTRON_17_254 intron 35.567527 126.521791 35.567527 91.954264 63.7608955 1.804554408 0.07304 77 64 SH9233 9233 snR6 / U6 RNA U6 36 55 66.657033 156.786216 111.7216245 2.048137242 -0.391278 77 65 SH20721 20721 YJL136C spliced 27.933756 73.776189 50.8549725 1.706333424 0.039463 77 66 SH2244 2244 Phe1 3' flank 30.038086 79.493226 54.765656 1.738508294 0.101883 77 67 SH6980 6980 snR60 5' 27.718413 70.943732 49.3310725 1.693120558 0.062126 77 68 SH12013 12013 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6951 6973 25.451144 68.363613 46.9073785 1.671241162 -0.066657 77 69 SH16396 16396 YER044C-A_5_239773_238459_INTRON_64_151 3' exon 29.549372 110.025604 29.549372 81.476232 55.512802 1.744393149 0.046306 77 70 SH20485 20485 YGL232W spliced 29.42606 86.43188 57.92897 1.762895807 -0.035406 77 71 SH21349 21349 YPR132W spliced 31.792483 96.21406 64.0032715 1.806202173 -0.11482 77 72 SH16271 16271 YDR447C_4_1355542_1354818_INTRON_4_317 intron 41.240051 139.156722 41.240051 98.916671 70.078361 1.845583936 0.046613 77 73 SH9023 9023 snR17a / U3a U3a 401 416 82.246745 131.360002 106.8033735 2.028584971 0.154847 77 74 SH1051 1051 Gly3 5' flank - tRNA7 7 31.163593 89.700329 60.431961 1.781266687 -0.016042 77 75 SH9749 9749 RUF4 RUF4 521 537 29.137393 85.230796 57.1840945 1.757275249 -0.026953 77 76 SH2515 2515 Pro1 66-72 + 3' flank 66 33.790735 97.66463 65.7276825 1.81774832 -0.093105 77 77 SH20388 20388 YFL034C-B spliced 29.005086 83.391925 56.1985055 1.749724766 -0.011992 77 78 SH20868 20868 YLR128W spliced 30.198514 77.098429 53.6484715 1.729557353 0.142545 77 79 SH20683 20683 YIL111W spliced 29.168551 87.729005 58.448778 1.766775436 -0.070214 77 80 SH8738 8738 LSR1 / U2 RNA U2 331 347 31.618182 74.856658 53.23742 1.726217 0.258647 77 81 SH16631 16631 YFL039C_6_54695_53260_INTRON_11_318 3' exon 31.772283 108.856791 31.772283 78.084508 54.9283955 1.739796913 0.224387 77 82 SH21383 21383 Lys3_4 spliced 56.949988 131.357574 94.153781 1.973837765 -0.2236 77 83 SH20904 20904 YLR316C spliced 39.132383 101.274934 70.2036585 1.846359745 -0.045147 77 84 SH19411 19411 YPR098C_16_729525_728944_INTRON_48_143 intron 27.472617 95.46668 27.472617 68.994063 48.23334 1.683347336 0.071713 77 85 SH13609 13609 MT ATP8/AAP1 3' 27.683824 100.662359 27.683824 73.978535 50.8311795 1.706130187 0.019527 77 86 SH6820 6820 snR52 snR52 6 23 9568.04927 7158.587984 8363.318627 3.922378643 -0.223374 77 87 SH11305 11305 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3411 3426 1155.75488 1020.863568 1088.309224 3.03675231 0.088899 77 88 SH3615 3615 Val1 71-74 + 3' flank 71 28.831132 76.994555 52.9128435 1.723561101 0.056588 77 89 SH18908 18908 YOL120C_15_94401_93394_INTRON_113_559 intron 28.409255 99.644311 28.409255 72.235056 50.3221555 1.701759235 0.092227 77 90 SH15528 15528 YBR048W_2_332790_333771_INTRON_46_556 intron 25.918647 94.496744 25.918647 69.578097 47.748372 1.678958569 -0.04851 77 91 SH6787 6787 snR50 3' 28.094126 72.63334 50.363733 1.702117913 0.065469 77 92 SH3649 3649 Val2 5' flank - tRNA6 6 28.085285 103.377527 65.731406 1.817772922 -0.374779 77 93 SH8334 8334 snoRNA cluster4 snR53 34.574196 121.849697 34.574196 88.275501 61.4248485 1.788344094 0.131739 77 94 SH12846 12846 MT COX1 COX1ai1 27.667263 109.126451 27.667263 82.459188 55.0632255 1.740861648 -0.089703 77 95 SH15723 15723 YBR255C-A_2_727032_726576_INTRON_64_157 intron 32.181323 121.643087 32.181323 90.461764 61.3215435 1.787613078 0.013893 77 96 SH21665 21665 copy of SH9400 28.058316 78.552831 53.3055735 1.72677262 -0.014668 77 97 SH6789 6789 snR50 3' 33.032422 75.579034 54.305728 1.73484564 0.326896 77 98 SH7755 7755 snoRNA cluster1 snR76 64.115101 182.905693 64.115101 119.790592 91.9528465 1.963565178 0.06851 77 99 SH6044 6044 snR37 snR37 136 155 26.362919 70.91823 48.6405745 1.686998696 -0.034086 77 100 SH9564 9564 RUF3 RUF3 206 225 27.790979 70.532403 49.161691 1.691626813 0.072741 77 101 SH5749 5749 snR35 5' 29.282596 74.200136 51.741366 1.71383789 0.122877 77 102 SH6500 6500 snR46 5' - 7 -9 7 31.62764 95.757028 63.692334 1.804087164 -0.109594 77 103 SH13001 13001 MT COX1 COX1ai2 25.353995 93.776767 25.353995 69.422772 47.3883835 1.675671894 -0.088784 77 104 SH16964 16964 YGR034W_7_555923_556666_INTRON_20_496 intron 32.62402 128.22713 32.62402 96.60311 64.613565 1.810323704 -0.100946 78 2 SH4111 4111 SRP RNA SRP RNA 446 460 28.6137 87.583359 58.0985295 1.76416514 -0.093349 78 3 SH19902 19902 snR17B spliced 37.553674 84.621081 61.0873775 1.785951481 0.288249 78 4 SH10002 10002 RUF5-1 3' 28.169266 95.627658 61.898462 1.791679858 -0.250235 78 5 SH14126 14126 MT COB Exon5 26.841524 98.500301 26.841524 72.658777 49.7501505 1.696794399 -0.022704 78 6 SH4375 4375 telomerase RNA telomerase 911 927 27.356185 78.771441 53.063813 1.724798454 -0.0652 78 7 SH620 620 Gln1 3' flank 41.343055 108.138384 74.7407195 1.873557274 -0.133006 78 8 SH9448 9448 RUF2 RUF2 81 97 27.533492 72.43403 49.983761 1.698828931 0.029286 78 9 SH14608 14608 MT 21S rRNA Sce1 endonuc 26.667308 107.535635 26.667308 81.868327 54.2678175 1.734542356 -0.151863 78 10 SH14968 14968 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.313609 117.547234 28.313609 90.233625 59.273617 1.77286143 -0.153577 78 11 SH10266 10266 RUF7 5' 33.979919 94.56726 64.2735895 1.808032555 -0.022888 78 12 SH16022 16022 YDL189W_4_122079_123590_INTRON_1_99 intron 24.915562 89.492024 24.915562 65.576462 45.246012 1.655580306 -0.064111 78 13 SH13251 13251 MT COX1 COX1-ai4 24.697941 91.383965 24.697941 67.686024 46.1919825 1.664566602 -0.112686 78 14 SH20880 20880 YLR211C spliced 47.864069 117.781905 82.822987 1.918150889 -0.176439 78 15 SH13116 13116 MT COX1 COX1ai3 24.238773 83.228913 24.238773 59.99014 42.1144565 1.6244312 -0.024837 78 16 SH10938 10938 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1576 1589 41.239063 115.21622 78.2276415 1.893360237 -0.263756 78 17 SH2790 2790 Pro6 tRNA-intron 41 57 26.967334 101.787367 64.3773505 1.808733099 -0.405165 78 18 SH6722 6722 snR49 snR49 136 155 30.097973 70.981244 50.5396085 1.703631873 0.219029 78 19 SH3503 3503 Tyr1 tRNA 56 68 33.371893 88.002733 60.687313 1.783097909 0.105148 78 20 SH20368 20368 YER133W spliced 29.338623 82.570914 55.9547685 1.747837103 0.019457 78 21 SH7389 7389 snR68 3' 34.173469 105.146893 69.660181 1.842984599 -0.23402 78 22 SH4967 4967 snR9 3' 29.50714 87.956079 58.7316095 1.768871903 -0.058766 78 23 SH5015 5015 snR10 snR10 106 124 32.069718 89.015527 60.5426225 1.782061229 0.034175 78 24 SH138 138 Arg1 66-73 + 3' flank 66 3' flank 27.694541 76.650125 52.172333 1.717440258 -0.014706 78 25 SH17534 17534 YJL177W_10_90783_91654_INTRON_310_626 intron 30.337601 115.902555 30.337601 86.564954 58.4512775 1.766794007 0.003045 78 26 SH10065 10065 RUF6 RUF6 171 188 30.202596 87.261331 58.7319635 1.76887452 -0.015319 78 27 SH8375 8375 snoRNA cluster 5 5' 27.302959 106.925743 27.302959 80.622784 53.9628715 1.732095052 -0.092128 78 28 SH16402 16402 YER056C-A_5_270183_269421_INTRON_38_434 intron 31.098507 124.293581 31.098507 94.195074 62.6467905 1.796898826 -0.094477 78 29 SH11213 11213 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2951 2964 37.007962 87.754444 62.381203 1.795053746 0.201904 78 30 SH13706 13706 MT tRNAGlu (and 5' processing site for COB) tRNA 45.769503 154.505808 45.769503 109.736305 77.752904 1.890716619 -0.075442 78 31 SH3679 3679 Val2 3' flank 25.855669 72.992042 49.4238555 1.693936621 -0.09916 78 32 SH13558 13558 MT COX1 Exon 6 26.411288 99.886714 26.411288 74.475426 50.443357 1.702803981 -0.077519 78 33 SH1426 1426 Leu2 5' flank 26.790005 80.332768 53.5613865 1.728851811 -0.124256 78 34 SH5380 5380 snR31 5' 26.928865 71.843068 49.3859665 1.693603557 -0.005614 78 35 SH6186 6186 snR40 5' - 9 -9 9 36.338254 103.000472 69.669363 1.84304184 -0.140944 78 36 SH16989 16989 YGR118W_7_726968_727725_INTRON_66_385 intron 29.554987 108.959713 29.554987 80.404726 54.9798565 1.740203602 0.059918 78 37 SH1959 1959 Lys2 5' flank - tRNA11 11 34.364472 91.20587 62.785171 1.797857081 0.060224 78 38 SH18936 18936 YOL121C_15_92849_92025_INTRON_21_410 intron 29.835658 105.616263 29.835658 76.780605 53.3081315 1.72679346 0.123904 78 39 SH11286 11286 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3316 3333 32.60973 82.128987 57.3693585 1.758679994 0.181086 78 40 SH15138 15138 MT tRNA Thr1 reverse complement 5' 28.150893 99.135122 28.150893 71.984229 50.067561 1.699556436 0.07797 78 41 SH19252 19252 YPL129W_16_305297_306136_INTRON_10_114 intron 28.035181 102.541885 28.035181 75.506704 51.7709425 1.714086071 0.023376 78 42 SH12791 12791 MT COX1 COX1ai1 29.944361 113.225401 29.944361 84.28104 57.1127005 1.756732696 0.026946 78 43 SH16434 16434 YER074W_5_306319_307192_INTRON_4_469 intron 27.209809 109.149387 27.209809 82.939578 55.0746935 1.740952089 -0.126933 78 44 SH19838 19838 Negative Control 29.121978 90.260137 59.6910575 1.775909273 -0.116354 78 45 SH18906 18906 YOL120C_15_94401_93394_INTRON_113_559 intron 33.316141 124.717735 33.316141 92.401594 62.8588675 1.798366552 0.007294 78 46 SH493 493 Asp2 tRNA 26 38 75.858198 122.737107 99.2976525 1.996938981 0.193977 78 47 SH17176 17176 YHR021C_8_148660_147862_INTRON_4_553 intron 28.557807 104.738871 28.557807 77.181064 52.8694355 1.723204673 0.036218 78 48 SH5511 5511 snR32 3' 28.619207 73.012571 50.815889 1.705999528 0.095854 78 49 SH11037 11037 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2071 2089 30.942408 89.775232 60.35882 1.780740741 -0.026866 78 50 SH18207 18207 YML024W_13_225889_226697_INTRON_4_401 intron/exon 30.995228 113.046043 30.995228 83.050815 57.0230215 1.756050226 0.095858 78 51 SH17596 17596 YJL191W_10_73786_74610_INTRON_11_418 intron 28.723788 108.459599 28.723788 80.735811 54.7297995 1.738223857 0.002054 78 52 SH14075 14075 MT COB Cytbi4 28.639552 96.732345 28.639552 69.092793 48.8661725 1.689008324 0.150452 78 53 SH11026 11026 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2016 2033 1075.320901 871.695753 973.508327 2.988339671 0.242152 78 54 SH16212 16212 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 33.753835 117.500155 33.753835 84.74632 59.2500775 1.772688923 0.178709 78 55 SH13718 13718 MT tRNAGlu (and 5' processing site for COB) 3' (and 5' proc site for COB) 27.514839 114.394144 27.514839 87.879305 57.697072 1.761153774 -0.16385 78 56 SH12643 12643 MT_15S MT_15S 28.036961 103.803554 28.036961 76.766593 52.401777 1.719346015 0.006928 78 57 SH19149 19149 YPL075W_16_412249_415357_INTRON_9_759 intron 29.26891 110.477425 29.26891 82.208515 55.7387125 1.746156933 0.019379 78 58 SH8499 8499 snR19 / U1 RNA 5' - 8 -9 8 30.102521 94.380476 62.2414985 1.79408004 -0.141086 78 59 SH14742 14742 MT ORF11; tRNA Leu; tRNA Gln 5' 29.678186 119.022787 29.678186 90.344601 60.0113935 1.778233711 -0.092479 78 60 SH6015 6015 snR37 5' - 8 -9 8 34.21997 93.478184 63.849077 1.805154623 0.00665 78 61 SH16483 16483 YER102W_5_362729_363698_INTRON_1_360 intron 29.632669 120.097186 29.632669 91.464517 60.548593 1.782104056 -0.113592 78 62 SH16616 16616 YFL039C_6_54695_53260_INTRON_11_318 intron 31.876091 125.284264 31.876091 94.408173 63.142132 1.800319242 -0.074098 78 63 SH19739 19739 Negative Control 31.491267 102.467847 66.979557 1.825942271 -0.250834 78 64 SH4746 4746 snR5 5' 28.945594 80.553804 54.749699 1.738381736 0.018808 78 65 SH5797 5797 snR35 snR35 171 195 26.685166 68.991242 47.838204 1.679774866 0.015746 78 66 SH6159 6159 snR39B 3' 26.671469 81.270754 53.9711115 1.732161362 -0.144234 78 67 SH17457 17457 YIL148W_9_68708_69528_INTRON_9_442 intron 28.827374 112.514888 28.827374 84.687514 56.757444 1.754022829 -0.039007 78 68 SH6358 6358 snR43 snR43 31 43 33.206326 93.796051 63.5011885 1.802781854 -0.025944 78 69 SH16299 16299 YDR450W_4_1359912_1360787_INTRON_48_482 intron 28.427556 117.112955 28.427556 89.685399 59.0564775 1.771267539 -0.138774 78 70 SH20299 20299 YEL012W spliced 28.20368 87.399744 57.801712 1.761940702 -0.111782 78 71 SH19101 19101 YOR312C_15_901173_900242_INTRON_2_427 intron 25.870233 102.449858 25.870233 77.579625 51.724929 1.713699903 -0.156566 78 72 SH4985 4985 snR10 5' 25.88647 70.484893 48.1856815 1.682918006 -0.063327 78 73 SH3283 3283 Thr2 tRNA 16 30 35.324026 99.086095 67.2050605 1.827401976 -0.084517 78 74 SH13685 13685 MT ORF 5 (hypothetical) ORF5 26.651593 95.738232 26.651593 70.086639 48.369116 1.68456815 -0.001794 78 75 SH12457 12457 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank / 5S 79.398886 209.482301 79.398886 131.083415 105.2411505 2.022185587 0.120931 78 76 SH68 68 Ala2 5' flank 26.76234 80.040863 53.4016015 1.727554282 -0.122558 78 77 SH15072 15072 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.013219 106.535595 29.013219 78.522376 53.7677975 1.730522247 0.048777 78 78 SH10954 10954 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1656 1673 17062.55642 9923.736747 13493.14658 4.130113238 0.014208 78 79 SH16100 16100 YDR059C_4_569765_569229_INTRON_48_137 intron 29.342393 108.655312 29.342393 80.312919 54.827656 1.738999679 0.04746 78 80 SH14248 14248 MT tRNA Ser 3' 29.480836 106.880494 29.480836 78.399658 53.940247 1.731912931 0.080469 78 81 SH14089 14089 MT COB Cytbi4 27.229395 99.294653 27.229395 73.065258 50.1473265 1.700247784 -0.000428 78 82 SH9150 9150 snR7 U5 RNA U5 21 33 6430.654518 3784.643517 5107.649018 3.708221046 0.268196 78 83 SH18507 18507 YMR194W_13_651144_651909_INTRON_17_479 intron/exon 27.618998 98.72156 27.618998 72.102562 49.86078 1.697759068 0.039659 78 84 SH1306 1306 Ile3 5' flank 28.038023 76.878745 52.458384 1.719814908 0.005537 78 85 SH20452 20452 YGL137W spliced 28.261925 81.020506 54.6412155 1.737520352 -0.032013 78 86 SH18338 18338 YML124C_13_23684_22049_INTRON_26_323 intron 30.392733 116.804072 30.392733 87.411339 58.902036 1.770130307 -0.009577 78 87 SH11291 11291 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3341 3359 27.072097 70.9053 48.9886985 1.690095902 0.01721 78 88 SH12742 12742 MT COX1 COX1ai1 28.477783 110.435912 28.477783 82.958129 55.717956 1.745995176 -0.041339 78 89 SH11571 11571 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4741 4756 409.971666 399.032243 404.5019545 2.606920624 0.237954 78 90 SH13166 13166 MT COX1 intronic 27.818385 107.897193 27.818385 81.078808 54.4485965 1.73598669 -0.062537 78 91 SH11822 11822 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5996 6011 50.411815 98.30275 74.3572825 1.871323509 0.230391 78 92 SH17765 17765 YKL157W_11_154993_158183_INTRON_282_664 3' exon 25.594165 91.356445 25.594165 66.76228 46.1782225 1.664437212 -0.032096 78 93 SH11174 11174 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2756 2773 120.25412 186.499578 153.376849 2.185759811 -0.028289 78 94 SH2107 2107 Met1 5' flank 31.127 87.221297 59.1741485 1.772132017 0.025741 78 95 SH13641 13641 MT ATP6 ATP6 29.031092 108.378067 29.031092 80.346975 54.6890335 1.737900248 0.026939 78 96 SH2453 2453 Phe5 tRNA-exon/intron 36 53 29.629677 91.551187 60.590432 1.782404049 -0.115192 78 97 SH16099 16099 YDR059C_4_569765_569229_INTRON_48_137 intron 29.374771 104.764396 29.374771 76.389625 52.882198 1.723309498 0.099682 78 98 SH1377 1377 Leu1 5' flank 28.83329 80.667449 54.7503695 1.738387054 0.010072 78 99 SH21061 21061 YMR194W spliced 26.315232 76.134142 51.224687 1.709479313 -0.105673 78 100 SH4830 4830 snR8 5' 27.67913 74.140919 50.9100245 1.706803306 0.017096 78 101 SH19629 19629 RNA14 2.2 37.976924 98.940671 68.4587975 1.835429266 -0.021709 78 102 SH6549 6549 snR46 3' 25.124474 80.159942 52.642208 1.721334097 -0.244293 78 103 SH10644 10644 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 106 128 25.402728 69.521022 47.461875 1.676344891 -0.086443 78 104 SH2288 2288 Phe2 tRNA-exon/intron 36 53 29.976067 89.609139 59.792603 1.77664746 -0.066468 79 2 SH17756 17756 YKL157W_11_154993_158183_INTRON_282_664 intron 22.280607 90.031078 22.280607 68.750471 45.515539 1.65815969 -0.321073 79 3 SH9326 9326 RUF1 RUF1 206 223 39.093367 89.258791 64.176079 1.807373179 0.214244 79 4 SH15395 15395 YBL050W_2_125087_126081_INTRON_31_146 5' exon 25.888827 100.739837 25.888827 75.85101 50.8699185 1.706461042 -0.133559 79 5 SH9025 9025 snR17a / U3a U3a 411 427 35.602605 91.518587 63.560596 1.803187961 0.083527 79 6 SH9631 9631 RUF4 5' 34.444941 97.241325 65.843133 1.818510488 -0.067894 79 7 SH13853 13853 MT COB Cytbi2 27.360674 94.044428 27.360674 67.683754 47.522214 1.676896666 0.082249 79 8 SH14304 14304 MT VAR1 includes 5’ processing site VAR1 29.013527 105.976407 29.013527 77.96288 53.4882035 1.728258012 0.055957 79 9 SH6135 6135 snR39B snR39B 16 28 29.115939 68.782336 48.9491375 1.689745044 0.186544 79 10 SH10967 10967 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1721 1739 102.659931 113.802567 108.231249 2.03435267 0.652606 79 11 SH3827 3827 RNaseP RNaseP 101 113 39.255575 81.020317 60.137946 1.779148591 0.414433 79 12 SH16416 16416 YER056C-A_5_270183_269421_INTRON_38_434 intron 25.612757 88.362176 25.612757 63.749419 44.681088 1.65012374 0.016189 79 13 SH9538 9538 RUF3 RUF3 76 92 27.506 70.438863 48.9724315 1.689951667 0.054165 79 14 SH8076 8076 snoRNA cluster 2 snR61 34.610171 115.827323 34.610171 82.217152 58.4136615 1.76651443 0.259112 79 15 SH17561 17561 YJL189W_10_75932_76473_INTRON_7_392 intron 29.067865 113.746081 29.067865 85.678216 57.3730405 1.758707866 -0.03825 79 16 SH13305 13305 MT COX1 COX1-ai5a 27.147211 147.893443 27.147211 121.746232 74.4467215 1.871845577 -0.727772 79 17 SH20439 20439 YGL087C spliced 34.236348 145.427504 89.831926 1.953430711 -0.895584 79 18 SH14629 14629 MT 21S rRNA Sce1 endonuc 26.169544 98.102046 26.169544 72.932502 49.551023 1.695052625 -0.075139 79 19 SH19948 19948 YBL050W spliced 28.96729 87.532029 58.2496595 1.765293391 -0.076004 79 20 SH11715 11715 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5461 5476 386.839664 202.482783 294.6612235 2.469322988 1.260794 79 21 SH6226 6226 snR42 5' 31.751603 94.042128 62.8968655 1.798629003 -0.069554 79 22 SH6898 6898 snR56 3' 31.86794 86.78393 59.325935 1.773244592 0.065004 79 23 SH5789 5789 snR35 snR35 131 147 32.14264 87.520165 59.8314025 1.776929183 0.063423 79 24 SH8525 8525 snR19 / U1 RNA U1 121 137 107.694408 153.844272 130.76934 2.116505932 0.171979 79 25 SH3429 3429 Trp1 5' flank 27.930861 74.914423 51.422642 1.711154386 0.024237 79 26 SH6427 6427 snR45 5' 27.57083 83.533684 55.552257 1.744701708 -0.109244 79 27 SH6353 6353 snR43 snR43 6 21 33.758434 71.450387 52.6044105 1.721022158 0.428685 79 28 SH5632 5632 snR34 snR34 81 100 26.045144 65.012287 45.5287155 1.658285398 0.027546 79 29 SH20736 20736 YJL191W spliced 29.681719 89.726548 59.7041335 1.7760044 -0.081701 79 30 SH21512 21512 copy of SH2857 49.834237 100.749491 75.291864 1.876748049 0.170774 79 31 SH15186 15186 MT COX3 cox3 27.357515 112.289546 27.357515 85.932031 56.644773 1.753159841 -0.15222 79 32 SH4063 4063 SRP RNA SRP RNA 206 225 30.450247 95.011058 62.7306525 1.797479805 -0.136015 79 33 SH2323 2323 Phe3 5' flank 26.882701 77.195384 52.0390425 1.716329297 -0.077869 79 34 SH11277 11277 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3271 3288 30.999272 76.411768 53.70552 1.730018926 0.200813 79 35 SH16637 16637 YFR024C-A_6_203420_201947_INTRON_48_165 intron 27.83028 103.171911 27.83028 76.341631 52.0859555 1.716720636 -0.001456 79 36 SH1323 1323 Ile3 5' flank - tRNA12 12 31.456512 92.060916 61.758714 1.790698244 -0.043705 79 37 SH5949 5949 snR36 snR36 201 223 27.757661 71.456907 49.607284 1.69554545 0.057935 79 38 SH2765 2765 Pro6 5' flank 30.088507 90.852269 60.470388 1.781542755 -0.08277 79 39 SH4064 4064 SRP RNA SRP RNA 211 229 30.333006 92.910352 61.621679 1.789733527 -0.106591 79 40 SH7886 7886 snoRNA cluster1 snR73/intergenic 28.096672 109.588722 28.096672 82.49205 55.294361 1.742680844 -0.061084 79 41 SH21895 21895 copy of SH19000 27.880739 84.592254 56.2364965 1.750018257 -0.100791 79 42 SH17108 17108 YHR001W-A_8_107819_108115_INTRON_7_69 exon/intron 32.3175 116.752995 32.3175 85.435495 58.8764975 1.769941966 0.107978 79 43 SH13056 13056 MT COX1 COX1ai2 27.671812 108.399059 27.671812 81.727247 54.6995295 1.737983591 -0.080467 79 44 SH20930 20930 YLR388W spliced 27.722146 78.832287 53.2772165 1.726541527 -0.040934 79 45 SH17889 17889 YLR048W_12_242233_243350_INTRON_91_449 intron 29.816084 119.820111 29.816084 91.004027 60.4100555 1.781109235 -0.097525 79 46 SH2089 2089 Lys4 3' flank 27.092872 78.606586 52.849729 1.723042765 -0.081326 79 47 SH12082 12082 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7296 7315 31.342829 81.500051 56.42144 1.751444166 0.139943 79 48 SH20335 20335 YER074W-A spliced 26.480807 75.514326 50.9975665 1.707549453 -0.08575 79 49 SH3793 3793 RNaseP 5' flank 30.719843 83.888812 57.3043275 1.75818742 0.068382 79 50 SH17894 17894 YLR048W_12_242233_243350_INTRON_91_449 intron/exon 30.619904 112.579036 30.619904 82.959132 56.789518 1.754268183 0.081261 79 51 SH9768 9768 RUF4 RUF4 616 632 28.398448 92.261979 60.3302135 1.780534862 -0.183962 79 52 SH19746 19746 Negative Control 28.494736 82.51845 55.506593 1.744344571 -0.034897 79 53 SH20168 20168 YDL136W spliced 28.829332 90.072176 59.450754 1.774157367 -0.126647 79 54 SH12936 12936 MT COX1 COX1ai2 31.697287 126.243925 31.697287 95.546638 63.6219625 1.803607061 -0.103247 79 55 SH7876 7876 snoRNA cluster1 snR73 29.935396 104.986479 29.935396 76.051083 52.9932395 1.724220469 0.139751 79 56 SH17071 17071 YGR225W_7_945138_946919_INTRON_1184_1276 5' exon 27.862908 109.492707 27.862908 82.629799 55.2463535 1.742303618 -0.078496 79 57 SH12896 12896 MT COX1 intronic 30.096591 115.393562 30.096591 86.296971 58.196781 1.764898963 -0.002834 79 58 SH8694 8694 LSR1 / U2 RNA U2 111 128 34.49224 88.281352 61.386796 1.788074967 0.129576 79 59 SH5291 5291 snR30 snR30 306 323 27.195099 74.398434 50.7967665 1.705836068 -0.020206 79 60 SH17911 17911 YLR061W_12_263195_263949_INTRON_13_401 intron 29.522272 99.263545 29.522272 70.741273 50.1317725 1.70011306 0.186031 79 61 SH9027 9027 snR17a / U3a U3a 421 437 29.645614 74.971714 52.308664 1.718573628 0.135734 79 62 SH6531 6531 snR46 snR46 146 163 27.317574 69.500542 48.409058 1.684926632 0.053795 79 63 SH13225 13225 MT COX1 COX1-ai4 27.140112 102.826702 27.140112 76.68659 51.913351 1.715279063 -0.053285 79 64 SH16201 16201 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 108.1226 272.414674 108.1226 165.292074 136.707337 2.135791824 0.052524 79 65 SH9710 9710 RUF4 RUF4 326 341 31.548691 88.269234 59.9089625 1.777491799 0.025276 79 66 SH16175 16175 YDR305C_4_1073479_1072737_INTRON_88_176 intron 29.116918 101.675773 29.116918 73.558855 51.3378865 1.710437985 0.120877 79 67 SH8133 8133 snoRNA cluster 3; snR41 29.116071 105.291083 29.116071 77.175012 53.1455415 1.725466836 0.072774 79 68 SH20917 20917 YLR344W spliced 29.170523 81.34351 55.2570165 1.742387432 0.023625 79 69 SH16275 16275 YDR447C_4_1355542_1354818_INTRON_4_317 intron 31.36025 118.908339 31.36025 88.548089 59.9541695 1.777819391 0.012378 79 70 SH2022 2022 Lys3 tRNA-intron/exon 56 72 86.364926 200.419219 143.3920725 2.156525142 -0.540946 79 71 SH6033 6033 snR37 snR37 81 98 28.196284 78.618161 53.4072225 1.727599993 -0.006258 79 72 SH3156 3156 Ser5 5' flank 28.052238 73.135273 50.5937555 1.704096918 0.055987 79 73 SH4341 4341 telomerase RNA telomerase 741 758 26.171805 75.382656 50.7772305 1.70566901 -0.10668 79 74 SH7880 7880 snoRNA cluster1 snR73 31.23164 112.092646 31.23164 81.861006 56.546323 1.75240437 0.128351 79 75 SH8650 8650 snR19 / U1 RNA 3' 26.651409 76.536254 51.5938315 1.712597781 -0.086282 79 76 SH21395 21395 Pro2_7 spliced 33.237265 92.010857 62.624061 1.796741227 0.013874 79 77 SH9154 9154 snR7 U5 RNA U5 41 55 30.854766 96.340518 63.597642 1.803441014 -0.143076 79 78 SH18493 18493 YMR194W_13_651144_651909_INTRON_17_479 intron 31.094884 117.799339 31.094884 87.704455 59.3996695 1.773784029 0.015813 79 79 SH17731 17731 YKL156W_11_158616_159214_INTRON_4_353 intron 29.190795 121.408411 29.190795 93.217616 61.2042055 1.786781265 -0.163071 79 80 SH10391 10391 RUF7 3' 31.804261 90.841952 61.3231065 1.787624147 -0.00837 79 81 SH13923 13923 MT COB Cytbi3 29.616272 116.560685 29.616272 87.944413 58.7803425 1.769232112 -0.05362 79 82 SH2784 2784 Pro6 tRNA 11 28 33.356883 84.380445 58.868664 1.76988418 0.169569 79 83 SH2844 2844 Pro7 tRNA-exon/intron 26 38 27.724091 76.38758 52.0558355 1.716469421 -0.009261 79 84 SH11446 11446 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4116 4131 76.105898 118.239599 97.1727485 1.987544487 0.266288 79 85 SH2495 2495 Pro1 5' flank 30.617461 79.145435 54.881448 1.739425561 0.142269 79 86 SH13587 13587 MT COX1 3' 27.763032 102.591166 27.763032 75.828134 51.795583 1.714292726 0.000743 79 87 SH20042 20042 YBR189W spliced 85.424594 128.868434 107.146514 2.029978046 0.230193 79 88 SH621 621 Gln1 3' flank 39.505289 108.012309 73.758799 1.867813837 -0.169612 79 89 SH6201 6201 snR40 snR40 66 84 34.327713 94.407078 64.3673955 1.808665937 -0.010742 79 90 SH4101 4101 SRP RNA SRP RNA 396 412 27.662085 72.419571 50.040828 1.699324487 0.038451 79 91 SH3420 3420 Trp1 5' flank 27.693109 70.605487 49.149298 1.691517319 0.064953 79 92 SH13279 13279 MT COX1 Exon 5a 24.246508 86.810601 24.246508 63.564093 43.9053005 1.642516954 -0.083316 79 93 SH1233 1233 Ile1 3' flank 26.709559 77.314875 52.012217 1.716105366 -0.091797 79 94 SH11836 11836 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6066 6084 34.233242 104.781709 69.5074755 1.842031515 -0.225406 79 95 SH6442 6442 snR45 snR45 56 72 34.218261 82.667202 58.4427315 1.766730506 0.235425 79 96 SH4502 4502 U3b (snR17b) U3b 66 83 30.945321 91.897731 61.421526 1.788320602 -0.062889 79 97 SH5835 5835 snR35 snR35 361 378 30.058138 83.022174 56.540156 1.752357002 0.055303 79 98 SH1623 1623 Leu5 5' flank - tRNA1 1 26.406389 64.153334 45.2798615 1.65590509 0.066809 79 99 SH7222 7222 snR64 3' 29.558425 74.725411 52.141918 1.717187002 0.133479 79 100 SH7706 7706 snoRNA cluster1 intergenic/snR77 49.837335 143.072561 49.837335 94.235226 72.0362805 1.85755128 0.30628 79 101 SH16648 16648 YFR031C-A_6_221405_220494_INTRON_5_151 intron 26.966022 103.111623 26.966022 77.145601 52.0558115 1.716469221 -0.071385 79 102 SH21640 21640 copy of SH8350 29.042446 90.741751 59.8920985 1.77736953 -0.128247 79 103 SH20426 20426 YGL033W spliced 38.183027 103.116948 70.6499875 1.849112089 -0.102532 79 104 SH15922 15922 YDL083C_4_307788_306925_INTRON_25_456 3' exon 31.973462 123.294907 31.973462 92.321445 62.1474535 1.793423338 -0.02626 80 2 SH4546 4546 U3b (snR17b) U3b 286 298 28.108362 78.806729 53.4575455 1.728009014 -0.014541 80 3 SH12623 12623 MT_15S MT_15S 41.205415 147.837891 41.205415 107.632476 74.4189455 1.871683512 -0.126353 80 4 SH10029 10029 RUF6 5' - 5 -9 5 28.235356 74.024482 51.129919 1.708675105 0.056631 80 5 SH16998 16998 YGR118W_7_726968_727725_INTRON_66_385 intron 77.535181 202.065299 77.535181 125.530118 101.5326495 2.006605719 0.175156 80 6 SH506 506 Asp2 3' flank 28.650788 82.228333 55.4395605 1.743819779 -0.02108 80 7 SH18703 18703 YNL130C_14_381156_379555_INTRON_30_470 intron 29.139521 123.742219 29.139521 95.602698 62.3711095 1.79498347 -0.204507 80 8 SH6115 6115 snR39B 5' 29.204301 103.557799 66.38105 1.822044118 -0.336762 80 9 SH9726 9726 RUF4 RUF4 406 421 29.008055 90.369209 59.688632 1.775891625 -0.123468 80 10 SH9622 9622 RUF3 3' 26.448007 63.704798 45.0764025 1.653949248 0.076882 80 11 SH9867 9867 RUF5-1 RUF5-1 141 160 28.394995 104.774687 66.584841 1.823375367 -0.384505 80 12 SH6351 6351 snR43 5' - 12 -4 12 32.63323 113.53427 73.08375 1.863820823 -0.430264 80 13 SH18043 18043 YLR333C_12_796335_795573_INTRON_1_423 intron 27.99683 123.85061 27.99683 96.85378 62.425305 1.795360673 -0.278162 80 14 SH5614 5614 snR34 5' - 8 -9 8 32.182419 115.465517 73.823968 1.868197385 -0.4765 80 15 SH17718 17718 YKL081W_11_282533_284097_INTRON_206_531 intron/exon 27.718167 86.864278 27.718167 60.146111 43.932139 1.642782349 0.222976 80 16 SH15371 15371 YBL027W_2_168385_169338_INTRON_3_386 intron 30.043635 108.850878 30.043635 79.807243 54.925439 1.739773537 0.098283 80 17 SH13744 13744 MT COB Exon1 28.290449 103.278472 28.290449 75.988023 52.139236 1.717164663 0.034092 80 18 SH11269 11269 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3231 3248 31.121454 77.343068 54.232261 1.734257711 0.196096 80 19 SH8865 8865 LSR1 / U2 RNA U2 966 982 31.543766 85.038676 58.291221 1.765603152 0.082746 80 20 SH2574 2574 Pro2 3' flank 29.47578 77.480922 53.478351 1.728178007 0.091948 80 21 SH14760 14760 MT ORF11; tRNA Leu; tRNA Gln ORF11 26.192799 95.044792 26.192799 69.851993 48.022396 1.681443825 -0.032017 80 22 SH12364 12364 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.845925 111.837134 29.845925 82.991209 56.418567 1.751422051 0.046397 80 23 SH10605 10605 RUF8 951 + 3' 951 27.593714 75.523568 51.558641 1.712301462 -0.006753 80 24 SH4821 4821 snR5 3' 28.917695 83.686107 56.301901 1.750523059 -0.021203 80 25 SH289 289 Arg4 41-53 41 53 80.573388 141.506525 111.0399565 2.045479283 -0.002167 80 26 SH13055 13055 MT COX1 COX1ai2 29.586952 114.615178 29.586952 86.028226 57.807589 1.761984856 -0.020867 80 27 SH1841 1841 Leu9 5' flank 29.949681 89.525062 59.7373715 1.776246109 -0.066194 80 28 SH9442 9442 RUF2 RUF2 51 66 41.697172 99.085192 70.391182 1.847518258 0.052171 80 29 SH12194 12194 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7856 7874 25.377189 65.173614 45.2754015 1.65586231 -0.023535 80 30 SH4310 4310 telomerase RNA telomerase 586 603 48.853166 106.767204 77.810185 1.891036448 0.037438 80 31 SH10352 10352 RUF7 RUF7 371 387 40.173291 80.434352 60.3038215 1.780344835 0.448924 80 32 SH8986 8986 snR17a / U3a U3a 216 230 43.307429 97.197222 70.2523255 1.846660705 0.123138 80 33 SH14039 14039 MT COB Cytbi4 28.822475 108.226998 28.822475 80.404523 54.613499 1.737300002 0.012634 80 34 SH1361 1361 Ile3 3' flank 27.590547 76.539044 52.0647955 1.716544167 -0.020342 80 35 SH8914 8914 LSR1 / U2 RNA 3' 28.243408 89.789594 59.016501 1.770973457 -0.149268 80 36 SH15242 15242 MT tRNA fMet 5' 25.962682 97.863864 25.962682 72.901182 49.431932 1.694007585 -0.09001 80 37 SH4261 4261 telomerase RNA telomerase 341 360 30.423155 77.00128 53.7122175 1.730073083 0.157772 80 38 SH10725 10725 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 511 528 116.318369 174.785782 145.5520755 2.163018403 0.042367 80 39 SH12900 12900 MT COX1 intronic/exon2 27.817833 98.659687 27.817833 71.841854 49.8298435 1.697489523 0.05695 80 40 SH6578 6578 snR47 5' - 12 -4 12 30.046675 75.291575 52.669125 1.721556103 0.156791 80 41 SH17737 17737 YKL156W_11_158616_159214_INTRON_4_353 intron 29.638755 106.762182 29.638755 78.123427 53.881091 1.731436381 0.094069 80 42 SH5575 5575 snR33 snR33 161 177 38.995954 92.290036 65.642995 1.817188388 0.143604 80 43 SH14902 14902 MT tRNA Ile 3' 30.137286 103.747699 30.137286 74.610413 52.3738495 1.719114496 0.171564 80 44 SH3940 3940 RNase MRP RNaseMRP 116 140 28.216117 63.841152 46.0286345 1.663028091 0.197624 80 45 SH2768 2768 Pro6 5' flank 28.032387 82.050196 55.0412915 1.740688616 -0.060022 80 46 SH4381 4381 telomerase RNA telomerase 941 957 29.745345 92.505399 61.125372 1.786221515 -0.126018 80 47 SH4120 4120 SRP RNA SRP RNA 491 503 33.716617 95.874284 64.7954505 1.811544514 -0.057411 80 48 SH14069 14069 MT COB Cytbi4 28.620239 108.305859 28.620239 80.68562 54.6529295 1.737613446 -0.004128 80 49 SH20582 20582 YHR016C spliced 39.426165 100.19932 69.8127425 1.843934699 -0.016969 80 50 SH13189 13189 MT COX1 Exon4 27.763366 103.142905 27.763366 76.379539 52.0714525 1.716599692 -0.006488 80 51 SH16060 16060 YDL219W_4_65243_65766_INTRON_66_136 intron 25.306616 102.358213 25.306616 78.051597 51.6791065 1.713314996 -0.204806 80 52 SH19701 19701 Negative Control 29.722764 77.760437 53.7416005 1.730310596 0.104065 80 53 SH16635 16635 YFR024C-A_6_203420_201947_INTRON_48_165 exon/intron 26.038708 107.853989 26.038708 82.815281 54.4269945 1.735814353 -0.208323 80 54 SH6798 6798 snR50 3' 26.741309 76.66018 51.7007445 1.713496797 -0.081349 80 55 SH16896 16896 YGL226C-A_7_73156_72747_INTRON_22_170 intron 29.335226 101.402185 29.335226 73.066959 51.2010925 1.709279228 0.141669 80 56 SH20786 20786 YKL081W spliced 27.005726 77.591574 52.29865 1.718490478 -0.074384 80 57 SH20098 20098 YDL029W spliced 29.155045 76.87079 53.0129175 1.724381706 0.079249 80 58 SH18586 18586 YNL050C_14_534978_534075_INTRON_18_108 intron 29.079602 121.500263 29.079602 93.420661 61.2501315 1.787107025 -0.171545 80 59 SH11966 11966 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6716 6732 481.858553 496.849075 489.353814 2.689622978 0.091744 80 60 SH1537 1537 Leu3 3' flank 29.374604 89.134972 59.254788 1.772723449 -0.085388 80 61 SH8159 8159 snoRNA cluster 3; snR70 29.537365 105.055684 29.537365 76.518319 53.027842 1.724503954 0.108398 80 62 SH21624 21624 copy of SH7729 27.265389 79.96711 53.6162495 1.729296431 -0.086547 80 63 SH20993 20993 YML073C spliced 36.615929 95.406615 66.011272 1.819618101 0.023027 80 64 SH8182 8182 snoRNA cluster 3; snR70 31.757053 104.901701 31.757053 74.144648 52.9508505 1.72387294 0.276473 80 65 SH2871 2871 Pro7 3' flank 26.832411 84.954368 55.8933895 1.747360447 -0.17728 80 66 SH18470 18470 YMR143W_13_551927_552902_INTRON_25_568 intron 37.990824 134.561837 37.990824 97.571013 67.7809185 1.83110745 0.007345 80 67 SH4351 4351 telomerase RNA telomerase 791 813 28.869477 90.126266 59.4978715 1.774501429 -0.125713 80 68 SH10515 10515 RUF8 RUF8 501 523 26.897059 76.123475 51.510267 1.711893801 -0.063423 80 69 SH16453 16453 YER074W-A_0_5_307649_INTRON_95_196 intron 586.827223 1033.18609 586.827223 447.358867 517.093045 2.713568696 0.512441 80 70 SH4048 4048 SRP RNA SRP RNA 131 148 28.644624 83.219976 55.9323 1.747662678 -0.033488 80 71 SH20492 20492 YGL251C spliced 34.714165 94.160261 64.437213 1.809136748 0.004142 80 72 SH907 907 Glu3 tRNA 46 58 45.899774 84.659772 65.279773 1.814778636 0.455712 80 73 SH11614 11614 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4956 4971 458.342656 395.662353 427.0025045 2.630430422 0.393937 80 74 SH776 776 Gln4 3' flank 26.355221 68.532906 47.4440635 1.676181879 -0.001818 80 75 SH18667 18667 YNL112W_14_413636_416278_INTRON_1274_2275 intron 33.203769 123.576781 33.203769 91.373012 62.2883905 1.794407109 0.027138 80 76 SH2597 2597 Pro3 5' flank 35.028192 94.036043 64.5321175 1.809775916 0.01452 80 77 SH10702 10702 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 396 414 27.994151 70.360813 49.177482 1.691766288 0.089106 80 78 SH5160 5160 snR13 5' 28.090931 74.9645 51.5277155 1.712040888 0.034335 80 79 SH559 559 Cys1 3' flank 27.450433 69.937753 48.694093 1.687476281 0.057121 80 80 SH4815 4815 snR5 3' 26.793312 79.759272 53.276292 1.726533991 -0.11685 80 81 SH5337 5337 snR30 snR30 536 555 29.357107 77.6127 53.4849035 1.728231217 0.082646 80 82 SH19927 19927 YBL018C spliced 29.573183 85.405928 57.4895555 1.759588951 -0.010259 80 83 SH8621 8621 snR19 / U1 RNA U1 601 618 29.82174 73.277116 51.549428 1.712223851 0.169785 80 84 SH11200 11200 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2886 2904 32.448059 95.208954 63.8285065 1.805014683 -0.076049 80 85 SH5457 5457 snR32 5' 27.766568 75.322354 51.544461 1.712182003 0.007684 80 86 SH18484 18484 YMR194W_13_651144_651909_INTRON_17_479 exon/intron 32.273549 121.262181 32.273549 89.988632 61.1310905 1.786262143 0.025835 80 87 SH2236 2236 Phe1 tRNA-intron/exon 56 70 151.05741 218.62238 184.839895 2.266795713 -0.024708 80 88 SH20010 20010 YBR082C spliced 30.524356 83.252863 56.8886095 1.755025319 0.07161 80 89 SH5275 5275 snR30 snR30 226 240 30.139402 75.590344 52.864873 1.723167193 0.158632 80 90 SH9979 9979 RUF5-1 RUF5-1 701 718 27.803274 80.526694 54.164984 1.733718619 -0.05672 80 91 SH12266 12266 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.961678 151.003588 31.961678 120.04191 76.001794 1.880823844 -0.562335 80 92 SH15128 15128 MT tRNA Phe tRNA 29.186113 109.137952 29.186113 80.951839 55.068976 1.740907001 0.029464 80 93 SH16348 16348 YDR500C_4_1450856_1450201_INTRON_8_396 intron 32.28802 127.211462 32.28802 95.923442 64.105731 1.806896857 -0.095457 80 94 SH1463 1463 Leu2 tRNA 86 102 39.364134 94.41615 66.890142 1.825362118 0.104357 80 95 SH19430 19430 YPR132W_16_794960_795762_INTRON_66_430 intron 25.037752 98.807387 25.037752 74.769635 49.9036935 1.69813269 -0.184154 80 96 SH5576 5576 snR33 snR33 166 182 132.74669 209.887323 171.3170065 2.233800477 -0.110932 80 97 SH1996 1996 Lys3 5' flank 33.66608 81.529832 57.597956 1.760407072 0.235082 80 98 SH13035 13035 MT COX1 COX1ai2 26.090869 101.332284 26.090869 76.241415 51.166142 1.708982672 -0.123514 80 99 SH10454 10454 RUF8 RUF8 196 215 28.471107 81.502406 54.9867565 1.740258103 -0.024056 80 100 SH4266 4266 telomerase RNA telomerase 366 383 25.558433 82.926828 54.2426305 1.734340743 -0.244748 80 101 SH18148 18148 YLR406C_12_931752_931062_INTRON_58_406 intron 24.793591 99.603618 24.793591 75.810027 50.301809 1.701583604 -0.216286 80 102 SH7431 7431 snR69 snR69 56 73 37.116385 90.072928 63.5946565 1.803420626 0.151451 80 103 SH9699 9699 RUF4 RUF4 271 290 24.680003 74.418154 49.5490785 1.695035582 -0.207347 80 104 SH13123 13123 MT COX1 COX1ai3 27.290579 104.226228 27.290579 77.935649 52.613114 1.721094007 -0.059044 81 2 SH19770 19770 Negative Control 46.685085 102.36572 74.5254025 1.87230433 0.08242 81 3 SH12832 12832 MT COX1 COX1ai1 27.352384 99.376092 27.352384 73.023708 50.188046 1.700600287 0.008797 81 4 SH6070 6070 snR37 snR37 266 285 24.504779 75.575341 50.04006 1.699317822 -0.235876 81 5 SH13210 13210 MT COX1 COX1-ai4 25.928176 98.101402 25.928176 73.173226 49.550701 1.695049803 -0.096146 81 6 SH7901 7901 snoRNA cluster1 intergenic 28.09885 98.161463 28.09885 71.062613 49.5807315 1.69531293 0.086772 81 7 SH3261 3261 Thr2 5' flank 27.214109 70.030564 48.6223365 1.686835825 0.039197 81 8 SH5680 5680 snR34 snR34 321 336 64.991622 123.384097 94.1878595 1.973994927 0.026054 81 9 SH9373 9373 RUF1 RUF1 441 457 45.31238 104.614449 74.9634145 1.87484936 0.012766 81 10 SH13565 13565 MT COX1 Exon 6 28.783207 110.02696 28.783207 82.243753 55.51348 1.744398453 -0.01258 81 11 SH20680 20680 YIL111W spliced 29.644055 94.711605 62.17783 1.793635561 -0.167045 81 12 SH15629 15629 YBR181C_2_592732_591670_INTRON_7_358 intron 30.367552 116.544849 30.367552 87.177297 58.7724245 1.769173607 -0.006539 81 13 SH15144 15144 MT tRNA Thr1 reverse complement 5' / tRNA 25.806041 88.491626 25.806041 63.685585 44.745813 1.650752403 0.03126 81 14 SH18994 18994 YOR122C_15_552886_552297_INTRON_14_222 intron 25.873941 108.52351 25.873941 83.649569 54.761755 1.738477358 -0.230319 81 15 SH20907 20907 YLR316C spliced 28.16459 94.892697 61.5286435 1.78907734 -0.238521 81 16 SH21679 21679 copy of SH10029 35.112819 150.15299 92.6329045 1.966765282 -0.93689 81 17 SH17210 17210 YHR039C-A_8_187670_187164_INTRON_4_165 intron 31.083256 156.914933 31.083256 126.831677 78.9574665 1.897393205 -0.69875 81 18 SH13266 13266 MT COX1 COX1-ai4 29.282801 114.048363 29.282801 85.765562 57.5241815 1.759850448 -0.029966 81 19 SH14022 14022 MT COB Exon4 27.173318 107.711639 27.173318 81.538321 54.3558195 1.735246048 -0.112402 81 20 SH9569 9569 RUF3 RUF3 231 250 34.297929 86.366511 60.33222 1.780549306 0.169278 81 21 SH5483 5483 snR32 snR32 76 92 29.757879 82.423225 56.090552 1.748889714 0.047985 81 22 SH20279 20279 YDR450W spliced 27.48028 75.330949 51.4056145 1.711010555 -0.012069 81 23 SH6514 6514 snR46 snR46 61 77 32.152881 85.699283 58.926082 1.770307566 0.096374 81 24 SH17135 17135 YHR010W_8_126513_127484_INTRON_32_592 intron 32.07065 127.78965 32.07065 96.719 64.394825 1.808850967 -0.118003 81 25 SH21367 21367 Leu1_5 spliced 28.371801 83.065122 55.7184615 1.745999116 -0.049654 81 26 SH8207 8207 snoRNA cluster 3; snR51 29.126482 100.019169 29.126482 71.892687 50.5095845 1.703373796 0.144435 81 27 SH20942 20942 YLR426W spliced 28.558199 74.387625 51.472912 1.711578738 0.073153 81 28 SH20515 20515 YGR029W spliced 28.101129 91.247878 59.6745035 1.775788814 -0.18095 81 29 SH17941 17941 YLR093C_12_327416_326514_INTRON_17_157 3' exon 27.818427 107.978833 27.818427 81.160406 54.4894165 1.736312157 -0.063542 81 30 SH15972 15972 YDL136W_4_217600_218367_INTRON_4_408 5' exon 34.213501 125.805722 34.213501 92.592221 63.402861 1.802108855 0.025827 81 31 SH16684 16684 YGL030W_7_439087_439634_INTRON_4_233 intron 27.376621 103.030466 27.376621 76.653845 52.015233 1.716130548 -0.036509 81 32 SH18559 18559 YMR292W_13_854795_855293_INTRON_23_104 intron 25.42188 92.074486 25.42188 67.652606 46.537243 1.667800651 -0.058183 81 33 SH4627 4627 snR3 snR3 51 70 28.236581 80.308414 54.2724975 1.734579807 -0.024864 81 34 SH195 195 Arg2 3' flank 26.95629 73.356272 50.156281 1.700325327 -0.023655 81 35 SH13038 13038 MT COX1 COX1ai2 27.845592 96.220616 27.845592 69.375024 48.610308 1.686728373 0.092398 81 36 SH248 248 Arg3 3' flank 28.193616 83.325642 55.759629 1.746319875 -0.06466 81 37 SH8227 8227 snoRNA cluster 3; snR51/3' 32.744532 129.13822 32.744532 97.393688 65.06911 1.813374867 -0.114345 81 38 SH21439 21439 TH297 - control oligo; WTP_221 34.844494 99.246071 67.0452825 1.826368225 -0.099476 81 39 SH10215 10215 RUF6 RUF6 921 938 29.88424 90.754053 60.3191465 1.780455188 -0.090214 81 40 SH10796 10796 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 866 886 27.114682 71.580914 49.347798 1.693267778 0.011137 81 41 SH20884 20884 YLR211C spliced 28.894647 72.370422 50.6325345 1.704429667 0.122746 81 42 SH6509 6509 snR46 snR46 36 51 29.071557 78.011256 53.5414065 1.728689776 0.059101 81 43 SH19672 19672 SIR1 2.4 27.598145 84.589029 56.093587 1.748913213 -0.119948 81 44 SH11297 11297 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3371 3389 28.162803 80.870849 54.516826 1.736530563 -0.036781 81 45 SH8475 8475 snoRNA cluster 5 3' 28.00082 103.839974 28.00082 76.839154 52.419987 1.719496909 0.003551 81 46 SH18827 18827 YNL302C_14_62942_61957_INTRON_21_571 intron 32.039694 120.077349 32.039694 89.037655 60.5386745 1.782032908 0.032537 81 47 SH9513 9513 RUF3 5' 31.389844 79.32644 55.358142 1.743181505 0.183768 81 48 SH21537 21537 copy of SH3943 26.400942 64.300103 45.3505225 1.656582295 0.064101 81 49 SH6967 6967 snR60 5' 30.328963 83.425931 56.877447 1.754940094 0.059803 81 50 SH297 297 Arg4 3' flank 27.253906 70.868611 49.0612585 1.690738684 0.030597 81 51 SH8032 8032 snoRNA cluster 2 snR55 39.296294 141.490637 39.296294 103.194343 71.2453185 1.852756332 -0.080434 81 52 SH11592 11592 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4846 4859 52.418898 93.817954 73.118426 1.864026834 0.358566 81 53 SH12653 12653 MT_15S MT_15S 29.566361 95.595843 29.566361 67.029482 48.2979215 1.683928441 0.240879 81 54 SH16349 16349 YDR500C_4_1450856_1450201_INTRON_8_396 intron 30.382579 124.009682 30.382579 94.627103 62.504841 1.795913655 -0.132728 81 55 SH6853 6853 snR52 3' 28.091936 77.472448 52.782192 1.722487422 0.001455 81 56 SH2265 2265 Phe2 5' flank 29.865389 86.850605 58.357997 1.766100377 -0.023048 81 57 SH11606 11606 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4916 4931 36519.52598 16782.04106 26650.78352 4.425709982 0.177724 81 58 SH5537 5537 snR33 5' 30.389629 73.115733 51.752681 1.713932853 0.207535 81 59 SH16331 16331 YDR471W_4_1401759_1402553_INTRON_32_415 intron 32.27203 118.775437 32.27203 87.503407 59.8877185 1.777337768 0.069096 81 60 SH16227 16227 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 31.605495 112.265397 31.605495 81.659902 56.6326985 1.753067256 0.148082 81 61 SH21566 21566 copy of SH5226 31.845219 99.510251 65.677735 1.817418167 -0.181806 81 62 SH14970 14970 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 34.367362 123.104175 34.367362 89.736813 62.0520875 1.792756396 0.09327 81 63 SH14808 14808 "MT tRNAs (Lys, Arg1, Gly)" intergenic 27.377435 98.37442 27.377435 71.996985 49.68721 1.696244611 0.024147 81 64 SH17590 17590 YJL191W_10_73786_74610_INTRON_11_418 intron 29.692597 109.802801 29.692597 81.110204 55.4014005 1.743520743 0.059924 81 65 SH7717 7717 snoRNA cluster1 snR77 26.974829 91.346911 26.974829 65.372082 46.1734555 1.664392377 0.088244 81 66 SH17855 17855 YKR095W-A_11_625432_625839_INTRON_39_113 intron 33.324572 122.562679 33.324572 90.238107 61.7813395 1.79085732 0.055622 81 67 SH11576 11576 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4766 4783 35.553702 80.159012 57.856357 1.762351084 0.334329 81 68 SH1315 1315 Ile3 5' flank 26.71378 78.755568 52.734674 1.722096266 -0.109772 81 69 SH19976 19976 YBL087C spliced 29.148912 78.445215 53.7970635 1.73075857 0.058553 81 70 SH4526 4526 U3b (snR17b) U3b 186 202 107.702774 181.354796 144.528785 2.159954352 -0.111008 81 71 SH6652 6652 snR48 snR48 86 107 25.478555 70.129029 47.803792 1.679462348 -0.089059 81 72 SH4796 4796 snR5 snR5 151 173 27.283534 81.78566 54.534597 1.736672108 -0.107807 81 73 SH10941 10941 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1591 1607 67.447294 117.517923 92.4826085 1.966060071 0.155065 81 74 SH20726 20726 YJL177W spliced 30.351268 90.877387 60.6143275 1.782575291 -0.07156 81 75 SH6007 6007 snR37 5' 26.085097 68.771512 47.4283045 1.676037599 -0.024993 81 76 SH5026 5026 snR10 snR10 161 178 27.981628 78.191152 53.08639 1.724983193 -0.015204 81 77 SH6866 6866 snR56 5' 31.695229 83.211063 57.453146 1.759313815 0.122767 81 78 SH1281 1281 Ile2 tRNA 101 113 31.395851 83.173714 57.2847825 1.758039268 0.110759 81 79 SH16356 16356 YDR500C_4_1450856_1450201_INTRON_8_396 intron 34.113128 112.824266 34.113128 79.711138 56.912133 1.755204863 0.287637 81 80 SH16198 16198 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 28.252273 104.543277 28.252273 77.291004 52.7716385 1.722400579 0.014526 81 81 SH14581 14581 MT 21S rRNA intronic 33.358119 121.782942 33.358119 89.424823 61.391471 1.78810804 0.074866 81 82 SH10661 10661 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 191 208 71.078247 152.071589 111.574918 2.047566576 -0.267102 81 83 SH5454 5454 snR32 5' 29.387675 82.095459 55.741567 1.746179173 0.028387 81 84 SH9346 9346 RUF1 RUF1 306 322 29.427481 73.964885 51.696183 1.713458478 0.135356 81 85 SH1076 1076 Gly3 3' flank 27.201579 76.226483 51.714031 1.713608391 -0.04304 81 86 SH13042 13042 MT COX1 COX1ai2 29.657119 111.462892 29.657119 82.805773 56.231446 1.749979252 0.036958 81 87 SH21913 21913 copy of SH19566 31.910151 75.838438 53.8742945 1.731381596 0.26292 81 88 SH21478 21478 copy of SH1445 73.182077 141.469497 107.325787 2.030704082 -0.10474 81 89 SH7889 7889 snoRNA cluster1 intergenic 26.452024 102.877882 26.452024 77.425858 51.938941 1.71549309 -0.111833 81 90 SH1343 1343 Ile3 tRNA-intron/exon 96 108 39.580136 83.562222 61.571179 1.78937747 0.35874 81 91 SH17294 17294 YHR141C_8_382752_381991_INTRON_5_445 intron 27.638997 107.586835 27.638997 80.947838 54.2934175 1.734747179 -0.073108 81 92 SH21468 21468 copy of SH1004 30.998998 176.954681 103.9768395 2.016936612 -1.375391 81 93 SH19562 19562 CBP1 2.2 27.72222 97.439509 62.5808645 1.796441558 -0.300682 81 94 SH11220 11220 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2986 3009 26.688521 67.889978 47.2892495 1.674762422 0.031429 81 95 SH4995 4995 snR10 snR10 6 23 30.143407 78.930879 54.537143 1.736692383 0.115585 81 96 SH20220 20220 YDR092W spliced 30.801046 89.889899 60.3454725 1.780644692 -0.03497 81 97 SH12168 12168 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7726 7743 29.311953 81.430169 55.371061 1.743282845 0.031672 81 98 SH13776 13776 MT COB intronic 27.66466 97.478525 27.66466 70.813865 49.2392625 1.692311539 0.060146 81 99 SH6822 6822 snR52 snR52 16 32 118.325345 191.839562 155.0824535 2.190562663 -0.095423 81 100 SH3423 3423 Trp1 5' flank 30.222137 85.891874 58.0570055 1.763854632 0.010017 81 101 SH11824 11824 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6006 6019 33.505385 79.218627 56.362006 1.750986442 0.273165 81 102 SH6631 6631 snR48 5' 45.692994 91.795431 68.7442125 1.837236141 0.285085 81 103 SH7344 7344 snR68 5' 28.752894 76.214589 52.4837415 1.720024788 0.061662 81 104 SH6445 6445 snR45 snR45 71 87 27.130962 72.890757 50.0108595 1.699064319 -0.005108 82 2 SH1984 1984 Lys2 3' flank 25.474625 86.334363 55.904494 1.747446721 -0.291254 82 3 SH7543 7543 snR79 snR79 56 73 28.05567 90.15746 59.106565 1.771635721 -0.164519 82 4 SH6662 6662 snR48 3' 44.136673 141.235437 92.686055 1.967014398 -0.608168 82 5 SH14507 14507 MT 21S rRNA 21S rRNA3 25.860759 97.048392 25.860759 72.187633 49.024196 1.69041048 -0.088147 82 6 SH710 710 Gln3 3' flank 29.101519 70.151649 49.626584 1.695714382 0.166674 82 7 SH17052 17052 YGR214W_7_920570_921783_INTRON_91_545 intron 31.712782 118.841714 31.712782 88.128932 59.920857 1.777578016 0.03468 82 8 SH12542 12542 MT_ORF6 + ORF7 (hypothetical) ORF6/7 24.661135 91.332586 24.661135 67.671451 46.166293 1.664325004 -0.115254 82 9 SH21716 21716 copy of SH11501 26.81607 73.298674 50.057372 1.699468046 -0.032945 82 10 SH15857 15857 YDL079C_4_314747_312950_INTRON_413_704 intron 28.955957 90.744816 28.955957 62.788859 45.872408 1.661551538 0.263418 82 11 SH14602 14602 MT 21S rRNA Sce1 endonuc 26.317334 101.131574 26.317334 75.81424 51.065787 1.708130029 -0.101479 82 12 SH2445 2445 Phe5 5' flank - tRNA12 12 30.164636 88.386034 59.275335 1.772874017 -0.036814 82 13 SH4774 4774 snR5 snR5 41 53 50.150437 104.791647 77.471042 1.889139397 0.098054 82 14 SH1830 1830 Leu8 3' flank 28.014462 93.611542 60.813002 1.783996443 -0.224647 82 15 SH6559 6559 snR47 5' 32.909563 94.39754 63.6535515 1.80382264 -0.046598 82 16 SH19148 19148 YPL075W_16_412249_415357_INTRON_9_759 intron 64.060493 207.573023 64.060493 144.51253 104.2865115 2.01822814 -0.28321 82 17 SH8411 8411 snoRNA cluster 5 snR190 29.358613 106.945726 29.358613 78.587113 53.972863 1.732175456 0.07025 82 18 SH2221 2221 Phe1 5' flank 27.381954 71.885456 49.633705 1.695776695 0.025953 82 19 SH15392 15392 YBL040C_2_142830_142074_INTRON_23_119 intron 32.048186 120.21359 32.048186 89.165404 60.606795 1.782521318 0.030673 82 20 SH9223 9223 snR6 / U6 RNA 5' - 3 -14 3 29.570905 75.604963 52.587934 1.720886109 0.122559 82 21 SH10974 10974 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1756 1769 44017.10493 19417.8853 31717.49512 4.501298882 0.19146 82 22 SH5976 5976 snR36 snR36 336 354 425.511774 474.783506 450.14764 2.653354978 0.005803 82 23 SH11266 11266 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3216 3234 26.690552 73.348514 50.019533 1.699139633 -0.042633 82 24 SH21250 21250 YPL031C spliced 28.745696 77.424736 53.085216 1.724973589 0.045418 82 25 SH12928 12928 MT COX1 COX1ai2 28.488925 109.763952 28.488925 82.275027 55.381976 1.743368447 -0.032323 82 26 SH14159 14159 MT COB intronic 30.42928 121.242963 30.42928 91.813683 61.1214815 1.786193872 -0.083981 82 27 SH1035 1035 Gly3 5' flank 27.871413 66.919535 47.395474 1.675736871 0.128763 82 28 SH2286 2286 Phe2 tRNA-exon/intron 26 42 32.132247 91.348189 61.740218 1.790568159 -0.003235 82 29 SH17400 17400 YIL069C_9_232366_231550_INTRON_4_412 intron 27.82911 104.956982 27.82911 78.127872 52.978491 1.724099584 -0.024691 82 30 SH10878 10878 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1276 1289 1522.046364 1249.984475 1386.01542 3.141768062 0.134914 82 31 SH1788 1788 Leu8 5' flank 25.798735 79.138177 52.468456 1.719898284 -0.180982 82 32 SH17482 17482 YJL024C_10_396288_395627_INTRON_23_99 5' exon 38.774659 128.984725 38.774659 91.210066 64.9923625 1.812862324 0.163201 82 33 SH10049 10049 RUF6 RUF6 91 110 27.683268 83.923616 55.803442 1.746660987 -0.106239 82 34 SH1977 1977 Lys2 3' flank 44.119555 110.183612 77.1515835 1.887344844 -0.115299 82 35 SH8307 8307 snoRNA cluster4 intergenic 27.070015 108.641232 27.070015 82.571217 54.820616 1.738943911 -0.132181 82 36 SH5303 5303 snR30 snR30 366 378 30.054 91.055391 60.5546955 1.782147825 -0.087761 82 37 SH19018 19018 YOR182C_15_678792_678190_INTRON_4_414 intron 27.780747 105.174135 27.780747 78.393388 53.0870675 1.724988736 -0.031365 82 38 SH12548 12548 MT_ORF6 + ORF7 (hypothetical) 3' 30.03955 106.001707 30.03955 76.962157 53.5008535 1.72836071 0.134372 82 39 SH6819 6819 snR52 snR52 1 20 95.926976 162.55162 129.239298 2.11139459 -0.05579 82 40 SH148 148 Arg1 3' flank 29.156554 89.325666 59.24111 1.772623187 -0.098666 82 41 SH20444 20444 YGL103W spliced 49.579305 106.882633 78.230969 1.89337871 0.048462 82 42 SH1754 1754 Leu7 tRNA 66 80 56.644779 111.220742 83.9327605 1.923931507 0.091241 82 43 SH4613 4613 snR3 5' 29.568838 87.142402 58.35562 1.766082688 -0.041593 82 44 SH1618 1618 Leu5 5' flank 27.722445 73.006446 50.3644455 1.702124057 0.034904 82 45 SH20964 20964 YML026C spliced 29.991615 68.993358 49.4924865 1.694539273 0.24067 82 46 SH5862 5862 snR35 snR35 496 513 29.538899 82.463354 56.0011265 1.748196763 0.033581 82 47 SH21211 21211 YOR096W spliced 31.442301 88.276905 59.859603 1.777133832 0.02062 82 48 SH11933 11933 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6551 6566 64.17971 108.981842 86.580776 1.937421474 0.249124 82 49 SH9049 9049 snR17a / U3a 3' 28.268188 71.030555 49.6493715 1.695913755 0.098776 82 50 SH20856 20856 YLR078C spliced 121.665451 147.381672 134.5235615 2.128798357 0.387334 82 51 SH16376 16376 YER003C_5_159117_157735_INTRON_32_124 intron/exon 30.492731 122.51107 30.492731 93.018339 61.755535 1.790675888 -0.101358 82 52 SH9823 9823 RUF5-1 5' 28.364346 85.71469 57.039518 1.756175847 -0.081587 82 53 SH4607 4607 snR3 5' 28.066756 72.766711 50.4167335 1.702574704 0.061831 82 54 SH13967 13967 MT COB Cytbi3 25.274331 86.845072 25.274331 62.570741 43.922536 1.642687407 0.010292 82 55 SH803 803 Glu1 tRNA 31 43 32.312429 89.448032 60.8802305 1.784476288 0.036768 82 56 SH19951 19951 YBL050W spliced 47.847103 117.876079 82.861591 1.918353268 -0.178348 82 57 SH12360 12360 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.704296 110.437429 30.704296 80.733133 55.7187145 1.746001088 0.127021 82 58 SH19259 19259 YPL143W_16_282121_282969_INTRON_20_544 intron 59.500529 176.947676 59.500529 118.447147 88.973838 1.949262325 0.016009 82 59 SH15838 15838 YDL075W_4_322225_322987_INTRON_58_478 intron 28.794177 112.188675 28.794177 84.394498 56.5943375 1.75277298 -0.037708 82 60 SH15063 15063 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.579303 115.981173 29.579303 87.40187 58.4905865 1.767085976 -0.045719 82 61 SH2427 2427 Phe5 5' flank 29.865702 84.421796 57.143749 1.75696873 0.020844 82 62 SH5153 5153 snR13 5' 171.277887 225.54716 198.4125235 2.297569081 0.075294 82 63 SH15146 15146 MT tRNA Thr1 reverse complement tRNA 27.652637 103.057573 27.652637 76.404936 52.0287865 1.716243697 -0.014351 82 64 SH14227 14227 MT ATP9 ATP9 30.058613 101.905999 30.058613 72.847386 51.4529995 1.711410697 0.190581 82 65 SH8451 8451 snoRNA cluster 5 snR128 59.516042 174.303909 59.516042 115.787867 87.6519545 1.942761605 0.060229 82 66 SH15782 15782 YDL029W_4_399336_400634_INTRON_23_145 5' exon 29.183046 121.858253 29.183046 93.675207 61.4291265 1.78837434 -0.171001 82 67 SH5922 5922 snR36 snR36 66 78 34.636468 87.143319 60.8898935 1.784545214 0.15949 82 68 SH4904 4904 snR9 5' 28.812733 75.910292 52.3615125 1.719012183 0.069585 82 69 SH11608 11608 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4926 4939 2944.182676 1895.797575 2419.990126 3.383813594 0.34527 82 70 SH8161 8161 snoRNA cluster 3; snR70 86.777145 273.0233 86.777145 187.246155 137.01165 2.136757496 -0.417074 82 71 SH15326 15326 YAL003W_1_142172_143158_INTRON_81_446 intron 31.846328 121.195566 31.846328 90.349238 61.097783 1.786025452 0.001813 82 72 SH12892 12892 MT COX1 COX1ai1 28.992801 121.515475 28.992801 93.522674 61.2577375 1.787160952 -0.177234 82 73 SH10874 10874 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1256 1273 960.393892 885.098794 922.746343 2.965082333 0.069757 82 74 SH2697 2697 Pro4 3' flank 27.119094 78.970758 53.044926 1.724643848 -0.084131 82 75 SH21163 21163 YNL302C spliced 34.327451 92.784917 63.556184 1.803157814 0.024447 82 76 SH14391 14391 MT 21S rRNA 5' / 21S rRNA3 25.351997 97.339976 25.351997 72.987979 49.169988 1.691700102 -0.136991 82 77 SH11495 11495 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4361 4379 99.736853 161.40687 130.5718615 2.115849596 0.000824 82 78 SH10040 10040 RUF6 RUF6 46 62 45.621141 105.428788 75.5249645 1.87809053 0.002859 82 79 SH7310 7310 snR66 snR66 41 60 26.706151 85.820434 56.2632925 1.750225143 -0.196322 82 80 SH7276 7276 snR65 3' 27.33732 85.279488 56.308404 1.750573218 -0.145979 82 81 SH18179 18179 YLR448W_12_1028848_1029762_INTRON_16_399 intron 25.820647 112.157136 25.820647 87.336489 56.578568 1.752651951 -0.277388 82 82 SH3436 3436 Trp1 tRNA 11 27 31.011754 79.273834 55.142794 1.741488767 0.164755 82 83 SH14285 14285 MT VAR1 includes 5’ processing site VAR1 26.737366 104.007996 26.737366 78.27063 52.503998 1.720192375 -0.101925 82 84 SH6111 6111 snR37 3' 38.232702 100.116304 69.174503 1.839946048 -0.04055 82 85 SH21427 21427 Tyr1_2 spliced 70.462939 167.782023 119.122481 2.07599373 -0.454796 82 86 SH2886 2886 Pro8 5' flank 27.041199 74.253023 50.647111 1.704554677 -0.029258 82 87 SH13560 13560 MT COX1 Exon 6 27.497058 105.3127 27.497058 78.815642 53.15635 1.725555152 -0.056083 82 88 SH19569 19569 AEP2/ATP13 0.6 29.973289 84.105376 57.0393325 1.756174435 0.031466 82 89 SH13581 13581 MT COX1 Exon 6 27.206751 101.809853 27.206751 75.603102 51.4049265 1.711004743 -0.034794 82 90 SH17995 17995 YLR287C-A_12_713158_712537_INTRON_4_433 intron 28.860944 123.653893 28.860944 95.792949 62.3269465 1.794675851 -0.220439 82 91 SH1464 1464 Leu2 tRNA 91 108 25.829666 74.550288 50.189977 1.700616997 -0.121367 82 92 SH8608 8608 snR19 / U1 RNA U1 536 552 42.090865 199.758398 120.9246315 2.082514773 -1.317105 82 93 SH11119 11119 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2481 2497 29.894508 94.053008 61.973758 1.792207832 -0.144989 82 94 SH41 41 Ala1 3' flank 34.727805 97.043394 65.8855995 1.818790502 -0.056767 82 95 SH17548 17548 YJL177W_10_90783_91654_INTRON_310_626 intron/exon 47.93807 161.969517 47.93807 115.031447 81.4847585 1.911076383 -0.127983 82 96 SH2302 2302 Phe2 3' flank 36.169228 114.593665 75.3814465 1.877264467 -0.364778 82 97 SH21438 21438 TH298 - control oligo; WTP_220 27.367069 75.518663 51.442866 1.711325156 -0.022407 82 98 SH14377 14377 MT ORF9 and ORF10 (hypothetical) ORF10 26.788672 94.551873 26.788672 68.763201 47.7759365 1.679209209 0.026378 82 99 SH12433 12433 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.945707 101.049981 27.945707 74.104274 51.0249905 1.707782933 0.036029 82 100 SH15293 15293 MT 9S rRNA 9S 25.800773 99.206249 25.800773 74.405476 50.1031245 1.69986481 -0.121657 82 101 SH19658 19658 SIR1 2.2 25.19085 74.784656 49.987753 1.698863615 -0.172607 82 102 SH17749 17749 YKL157W_11_154993_158183_INTRON_282_664 intron 30.9999 122.551811 30.9999 92.551911 61.7759055 1.79081912 -0.071504 82 103 SH5052 5052 snR10 3' 30.886342 87.055299 58.9708205 1.77063717 0.0183 82 104 SH2001 2001 Lys3 5' flank 26.656548 77.040806 51.848677 1.714737679 -0.092216 83 2 SH4609 4609 snR3 5' 26.468001 68.001055 47.234528 1.67425958 0.013882 83 3 SH9270 9270 RUF1 5' 26.656649 88.530459 57.593554 1.760373879 -0.230945 83 4 SH20842 20842 YLL050C spliced 44.544742 83.624192 64.084467 1.806752777 0.456443 83 5 SH12509 12509 MT_ORF6 + ORF7 (hypothetical) 5' 25.684244 99.57601 25.684244 74.891766 50.288005 1.701464407 -0.136625 83 6 SH2317 2317 Phe3 5' flank 72.032539 117.210191 94.621365 1.975989209 0.225329 83 7 SH8457 8457 snoRNA cluster 5 snR128 31.301066 97.956671 31.301066 67.655605 49.4783355 1.694415081 0.340922 83 8 SH19031 19031 YOR234C_15_779404_778554_INTRON_20_546 5' exon 33.780316 133.465575 33.780316 100.685259 67.2327875 1.827581118 -0.155222 83 9 SH6349 6349 snR43 5' - 2 -14 2 31.620158 93.678274 62.649216 1.796915641 -0.065228 83 10 SH17369 17369 YIL052C_9_257061_256224_INTRON_38_509 intron 29.211142 109.374808 29.211142 81.163666 55.187404 1.741839965 0.028463 83 11 SH16951 16951 YGR027C_7_534779_534126_INTRON_1_312 3' exon 35.495287 140.710884 35.495287 106.215597 70.855442 1.850373212 -0.223654 83 12 SH8442 8442 snoRNA cluster 5 snR128 30.198719 96.243659 30.198719 67.04494 48.6218295 1.686831296 0.281412 83 13 SH16261 16261 YDR424C_4_1319830_1319376_INTRON_26_121 intron 26.627701 88.125883 26.627701 62.498182 44.5629415 1.64897385 0.108972 83 14 SH12634 12634 MT_15S MT_15S 25.825055 97.858652 25.825055 73.033597 49.429326 1.693984689 -0.101987 83 15 SH15372 15372 YBL027W_2_168385_169338_INTRON_3_386 intron 30.909948 131.749607 30.909948 101.839659 66.3748035 1.822003248 -0.254272 83 16 SH12803 12803 MT COX1 COX1ai1 29.255879 106.691562 29.255879 78.435683 53.845781 1.731151681 0.065577 83 17 SH7685 7685 snoRNA cluster1 intergenic 29.768577 117.094164 29.768577 88.325587 59.047082 1.77119844 -0.053445 83 18 SH6607 6607 snR47 3' 28.765193 76.640047 52.70262 1.721832206 0.056894 83 19 SH10212 10212 RUF6 RUF6 906 920 32.14888 88.670919 60.4098995 1.781108113 0.043475 83 20 SH16816 16816 YGL178W_7_167356_170575_INTRON_4_643 intron 29.503439 116.251492 29.503439 87.748053 58.625746 1.768088382 -0.055271 83 21 SH15187 15187 MT COX3 cox3 29.13011 100.423591 29.13011 72.293481 50.7117955 1.705108987 0.139103 83 22 SH4779 4779 snR5 snR5 66 81 33.16817 94.175264 63.671717 1.803946561 -0.03512 83 23 SH7683 7683 snoRNA cluster1 intergenic 32.40664 128.528941 32.40664 97.122301 64.7644705 1.811336819 -0.117545 83 24 SH5772 5772 snR35 snR35 46 63 27.306024 75.932611 51.6193175 1.712812258 -0.031953 83 25 SH11366 11366 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3716 3733 10409.92128 6588.041075 8498.981177 3.929366867 0.017936 83 26 SH19611 19611 RNA14 1.1 28.831186 78.470634 53.65091 1.729577093 0.037579 83 27 SH20922 20922 YLR367W spliced 28.768437 88.165051 58.466744 1.766908909 -0.096371 83 28 SH6664 6664 snR48 3' 395.368991 650.552765 522.960878 2.718469201 -0.594199 83 29 SH20382 20382 YFL034C-A spliced 34.160064 91.710404 62.935234 1.798893851 0.043923 83 30 SH16850 16850 YGL183C_7_157071_156547_INTRON_4_86 exon/intron 28.253928 97.472477 28.253928 70.218549 49.2362385 1.692284867 0.108837 83 31 SH7885 7885 snoRNA cluster1 snR73/intergenic 28.398678 117.106534 28.398678 89.707856 59.053267 1.771243929 -0.140521 83 32 SH8999 8999 snR17a / U3a U3a 281 300 26.872281 71.378607 49.125444 1.691306489 -0.003441 83 33 SH21524 21524 copy of SH3559 40.887624 93.070162 66.978893 1.825937965 0.165216 83 34 SH7844 7844 snoRNA cluster1 snR74 34.661955 121.25954 34.661955 87.597585 61.12977 1.786252762 0.149561 83 35 SH15452 15452 YBL087C_2_60732_59815_INTRON_43_546 intron 27.783288 108.520294 27.783288 81.737006 54.760147 1.738464605 -0.073011 83 36 SH8075 8075 snoRNA cluster 2 snR61 31.961123 118.520099 31.961123 87.558976 59.7600495 1.776410949 0.055157 83 37 SH8702 8702 LSR1 / U2 RNA U2 151 169 29.956601 72.467096 51.2118485 1.709370452 0.189416 83 38 SH20831 20831 YKR094C spliced 30.119028 69.053139 49.5860835 1.695359807 0.247919 83 39 SH19942 19942 YBL040C spliced 27.689308 80.865843 54.2775755 1.73462044 -0.068667 83 40 SH15276 15276 MT 9S rRNA 9S 27.154846 104.688975 27.154846 78.534129 52.8444875 1.72299969 -0.076097 83 41 SH1682 1682 Leu6 5' flank 31.154257 84.348151 57.751204 1.761561043 0.078729 83 42 SH5037 5037 snR10 snR10 216 230 78.739683 155.486014 117.1128485 2.068604544 -0.197162 83 43 SH4003 4003 SRP RNA 5' 29.369968 92.62078 60.995374 1.785296899 -0.144944 83 44 SH2570 2570 Pro2 tRNA 86 100 36.697637 85.965813 61.331725 1.78768518 0.236524 83 45 SH8271 8271 snoRNA cluster4 snR67 29.634918 117.590192 29.634918 88.955274 59.295096 1.773018777 -0.070458 83 46 SH1096 1096 Gly4 5' flank 29.435096 94.678529 62.0568125 1.792789465 -0.175972 83 47 SH282 282 Arg4 6-22 6 22 35.083763 83.113783 59.098773 1.771578464 0.260523 83 48 SH20458 20458 YGL178W spliced 26.73951 72.020699 49.3801045 1.693552005 -0.021573 83 49 SH6936 6936 snR58 snR58 41 58 59.368618 108.347626 83.858122 1.923545132 0.186488 83 50 SH19662 19662 SIR1 2.2 29.627739 78.729228 54.1784835 1.733826845 0.085635 83 51 SH15402 15402 YBL050W_2_125087_126081_INTRON_31_146 intron 26.604063 106.033835 26.604063 80.429772 53.5169175 1.728491091 -0.138587 83 52 SH2425 2425 Phe4 3' flank 30.807105 87.141285 58.974195 1.770662021 0.013334 83 53 SH10326 10326 RUF7 RUF7 241 255 31.374139 85.739695 58.556917 1.767578203 0.062829 83 54 SH2079 2079 Lys4 tRNA 61 75 52.911325 113.31953 83.1154275 1.919681643 -0.009659 83 55 SH468 468 Asp2 5' flank 27.692729 77.071218 52.3819735 1.719181857 -0.020314 83 56 SH2459 2459 Phe5 tRNA 66 80 28.336101 71.75177 50.0439355 1.699351456 0.093703 83 57 SH859 859 Glu2 61-72 + 3' flank 61 35.148378 76.610663 55.8795205 1.747252671 0.389024 83 58 SH10132 10132 RUF6 RUF6 506 520 34.422179 92.161725 63.291952 1.80134849 0.040487 83 59 SH20666 20666 YIL069C spliced 29.099302 91.422007 60.2606545 1.780033844 -0.137183 83 60 SH14788 14788 "MT tRNAs (Lys, Arg1, Gly)" 5' 27.585062 101.909262 27.585062 75.3242 51.454631 1.711424468 -0.004698 83 61 SH21017 21017 YMR033W spliced 27.804643 69.73321 48.7689265 1.688143196 0.084623 83 62 SH11358 11358 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3676 3689 710.334019 558.028214 634.1811165 2.802213306 0.405146 83 63 SH11945 11945 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6611 6630 5842.645848 4767.863355 5305.254602 3.724706231 -0.222372 83 64 SH13037 13037 MT COX1 COX1ai2 29.927825 126.777027 29.927825 97.849202 63.8885135 1.805422783 -0.204711 83 65 SH7108 7108 snR63 snR63 46 65 28.656299 80.94472 54.8005095 1.738784596 -0.004965 83 66 SH13598 13598 MT ATP8/AAP1 ATP8 27.209166 94.811784 27.209166 68.602618 47.905892 1.680388931 0.058616 83 67 SH18748 18748 YNL162W_14_331319_332151_INTRON_5_516 intron 29.103284 117.212028 29.103284 89.108744 59.106014 1.771631672 -0.097353 83 68 SH11258 11258 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3176 3189 964.28495 760.004469 862.1447095 2.935580168 0.314949 83 69 SH13501 13501 MT COX1 intronic 28.93497 112.804836 28.93497 84.869866 56.902418 1.755130722 -0.034141 83 70 SH4578 4578 U3b (snR17b) U3b 446 461 88.254071 144.110118 116.1820945 2.065139202 0.064083 83 71 SH13789 13789 MT COB intronic 24.60059 98.790801 24.60059 75.190211 49.8954005 1.698060513 -0.223458 83 72 SH1790 1790 Leu8 5' flank 26.299877 67.619372 46.9596245 1.671724616 0.007011 83 73 SH17318 17318 YHR203C_8_505526_504472_INTRON_15_283 3' exon 47.42898 146.747594 47.42898 100.318614 73.873797 1.868490422 0.136942 83 74 SH16492 16492 YER117W_5_396765_397649_INTRON_43_513 5' exon 193.319605 543.2467 193.319605 350.927095 272.12335 2.434765809 -0.506322 83 75 SH10478 10478 RUF8 RUF8 316 332 26.615479 79.634714 53.1250965 1.725299732 -0.127833 83 76 SH7908 7908 snoRNA cluster1 intergenic 24.606984 99.65807 24.606984 76.051086 50.329035 1.701818603 -0.233882 83 77 SH3274 3274 Thr2 5' flank 26.502321 75.323874 50.9130975 1.70682952 -0.081763 83 78 SH15632 15632 YBR181C_2_592732_591670_INTRON_7_358 3' exon 39.116877 126.121184 39.116877 88.004307 63.560592 1.803187934 0.2435 83 79 SH15269 15269 MT 9S rRNA 9S 26.549094 94.252445 26.549094 68.703351 47.6262225 1.677846137 0.009913 83 80 SH12316 12316 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.688674 141.4993 39.688674 102.810626 71.24965 1.852782735 -0.064575 83 81 SH21455 21455 copy of SH464 38.333814 94.821967 66.5778905 1.823330031 0.073689 83 82 SH5429 5429 snR31 211-225+3' 211 26.058162 67.215494 46.636828 1.668729004 -0.005022 83 83 SH1423 1423 Leu1 3' flank 28.93144 85.054948 56.993194 1.755822996 -0.036552 83 84 SH5095 5095 snR11 snR11 76 88 502.070231 719.01135 610.5407905 2.785714685 -0.447114 83 85 SH2523 2523 Pro1 3' flank 40.448541 103.512524 71.9805325 1.857215055 -0.063006 83 86 SH20598 20598 YHR041C spliced 36.22442 96.979038 66.601729 1.823485504 -0.019356 83 87 SH14368 14368 MT ORF9 and ORF10 (hypothetical) intergenic 27.454642 101.664026 27.454642 75.209384 51.332013 1.710388296 -0.012317 83 88 SH9816 9816 RUF4 3' 27.655775 73.547116 50.6014455 1.704162923 0.023187 83 89 SH5326 5326 snR30 snR30 481 493 146.546234 185.068478 165.807356 2.219603794 0.220068 83 90 SH3449 3449 Trp1 tRNA 76 90 119.952727 210.708034 165.3303805 2.218352665 -0.238313 83 91 SH13368 13368 MT COX1 intronic 26.21331 96.894564 26.21331 71.681254 48.947282 1.689728581 -0.055315 83 92 SH5123 5123 snR11 snR11 216 235 25.324377 72.729914 49.0271455 1.690436608 -0.135692 83 93 SH20243 20243 YDR367W spliced 28.47079 100.022278 64.246534 1.807849703 -0.305491 83 94 SH12794 12794 MT COX1 COX1ai1 25.611921 88.842852 25.611921 64.230931 44.921426 1.652453534 0.008481 83 95 SH4198 4198 telomerase RNA telomerase 26 43 27.070625 88.501062 57.7858435 1.761821457 -0.201577 83 96 SH475 475 Asp2 5' flank 24.848032 70.991835 47.9199335 1.680516207 -0.14905 83 97 SH7303 7303 snR66 snR66 6 23 50.289721 109.636333 79.963027 1.902889226 0.010491 83 98 SH8420 8420 snoRNA cluster 5 snR190 35.8897 123.33579 35.8897 88.44609 62.167895 1.793566162 0.159737 83 99 SH11077 11077 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2271 2286 227.45836 243.172499 235.3154295 2.371650405 0.29828 83 100 SH17900 17900 YLR061W_12_263195_263949_INTRON_13_401 intron 29.646386 122.19114 29.646386 93.544754 61.59557 1.789549478 -0.147762 83 101 SH1751 1751 Leu7 tRNA 51 63 31.458674 87.41977 59.439222 1.774073116 0.036411 83 102 SH12838 12838 MT COX1 COX1ai1 24.793413 95.220928 24.793413 71.427515 48.110464 1.682239545 -0.159159 83 103 SH9769 9769 RUF4 RUF4 621 633 30.874052 84.410004 57.642028 1.760739252 0.065503 83 104 SH3437 3437 Trp1 tRNA 16 31 34.915407 97.354703 66.135055 1.820431719 -0.058665 84 2 SH17503 17503 YJL136C_10_156971_156248_INTRON_25_484 5' exon 40.991944 152.449654 40.991944 112.45771 76.724827 1.884935918 -0.219755 84 3 SH2158 2158 Met2 5' flank 25.100945 75.465123 50.283034 1.701421474 -0.188184 84 4 SH9825 9825 RUF5-1 5' 27.444534 84.547867 55.9962005 1.74815856 -0.129978 84 5 SH12415 12415 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.189491 117.072194 30.189491 87.882703 59.036097 1.771117638 -0.026877 84 6 SH14073 14073 MT COB Cytbi4 30.878364 119.310093 30.878364 89.431729 60.1550465 1.779272067 -0.023709 84 7 SH7380 7380 snR68 121-136 + 3' 121 35.931184 101.84421 68.887697 1.838141666 -0.126927 84 8 SH13052 13052 MT COX1 COX1ai2 29.302769 109.803467 29.302769 81.500698 55.4017335 1.743523354 0.030215 84 9 SH7251 7251 snR65 snR65 31 48 29.583429 86.137949 57.860689 1.762383601 -0.022998 84 10 SH14550 14550 MT 21S rRNA 21S rRNA3 27.17744 106.837869 27.17744 80.660429 53.9189345 1.731741301 -0.101278 84 11 SH5697 5697 snR34 snR34 406 422 28.874726 76.408919 52.6418225 1.721330916 0.067079 84 12 SH9086 9086 snR14 / U4 RNA U4 46 62 28.13426 82.68835 55.411305 1.743598378 -0.060944 84 13 SH2605 2605 Pro3 5' flank 36.684795 106.724199 71.704497 1.855546394 -0.206387 84 14 SH11764 11764 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5706 5723 128.932711 165.613419 147.273065 2.168123325 0.256124 84 15 SH18342 18342 YML124C_13_23684_22049_INTRON_26_323 intron 30.954694 145.414568 30.954694 115.459874 73.207284 1.864554295 -0.508401 84 16 SH10101 10101 RUF6 RUF6 351 370 29.302489 61.978799 45.640644 1.659351764 0.298788 84 17 SH17043 17043 YGR214W_7_920570_921783_INTRON_91_545 5' exon 28.455962 99.842939 28.455962 72.386977 50.4214695 1.702615499 0.093374 84 18 SH14530 14530 MT 21S rRNA 21S rRNA3 27.273802 94.330688 27.273802 68.056886 47.665344 1.678202732 0.070849 84 19 SH2745 2745 Pro5 3' flank 27.087735 76.982594 52.0351645 1.716296932 -0.060782 84 20 SH11977 11977 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6771 6789 171.579194 184.3276 177.953397 2.250306283 0.415684 84 21 SH5854 5854 snR35 snR35 456 478 28.894063 84.37739 56.6357265 1.753090476 -0.03098 84 22 SH14307 14307 MT VAR1 includes 5’ processing site VAR1 26.060048 92.720324 26.060048 67.660276 46.860162 1.670803786 -0.011211 84 23 SH483 483 Asp2 5' flank 43.025243 100.880618 71.9529305 1.857048487 0.042091 84 24 SH9555 9555 RUF3 RUF3 161 173 1356.968631 1139.374119 1248.171375 3.096274218 0.128357 84 25 SH11624 11624 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5006 5023 44.665298 93.652806 69.159052 1.839849032 0.22505 84 26 SH7970 7970 snoRNA cluster 2 5'/snR57 27.785732 110.76809 27.785732 83.982358 55.884045 1.747287834 -0.099978 84 27 SH6291 6291 snR42 snR42 236 252 42.931638 101.370844 72.151241 1.858243805 0.030392 84 28 SH3627 3627 Val1 3' flank 356.999669 816.741733 586.870701 2.768542428 -1.089812 84 29 SH4892 4892 snR8 3' 33.94194 88.372618 61.157279 1.786448155 0.113731 84 30 SH10207 10207 RUF6 RUF6 881 898 25.998772 83.310932 54.654852 1.737628723 -0.217189 84 31 SH18204 18204 YML024W_13_225889_226697_INTRON_4_401 intron 28.443783 110.164884 28.443783 82.721101 55.582442 1.744937623 -0.040725 84 32 SH14615 14615 MT 21S rRNA Sce1 endonuc 25.990632 98.831761 25.990632 73.841129 49.9158805 1.698238736 -0.100231 84 33 SH16869 16869 YGL187C_7_150529_149708_INTRON_1_342 intron 25.912983 97.089199 25.912983 72.176216 49.0445995 1.690591192 -0.08411 84 34 SH287 287 Arg4 31-46 31 46 30.606632 88.141596 59.374114 1.773597142 -0.01306 84 35 SH2310 2310 Phe2 3' flank 26.631057 80.481262 53.5561595 1.728809426 -0.137317 84 36 SH9408 9408 RUF1 3' 27.086372 73.532503 50.3094375 1.701649462 -0.016687 84 37 SH2139 2139 Met1 3' flank 32.134094 93.30607 62.720082 1.797406617 -0.043363 84 38 SH4140 4140 SRP RNA SRP RNA 591 607 30.134022 94.438057 62.2860395 1.794390717 -0.140629 84 39 SH9560 9560 RUF3 RUF3 186 202 30.195091 84.434006 57.3145485 1.758264876 0.035301 84 40 SH7039 7039 snR62 5' - 7 -14 7 27.45495 72.767378 50.111164 1.699934491 0.019379 84 41 SH10845 10845 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1111 1128 415.897852 433.696409 424.7971305 2.628181574 0.122222 84 42 SH8900 8900 LSR1 / U2 RNA U2 1141 1157 29.321128 65.734943 47.5280355 1.676949864 0.243553 84 43 SH2522 2522 Pro1 3' flank 29.493633 93.366248 61.4299405 1.788380095 -0.151721 84 44 SH6711 6711 snR49 snR49 81 97 31.802274 97.2232 64.512737 1.809645468 -0.135744 84 45 SH12804 12804 MT COX1 COX1ai1 25.945658 92.558878 25.945658 67.61322 46.779439 1.670055009 -0.019016 84 46 SH14621 14621 MT 21S rRNA Sce1 endonuc 29.300517 109.120011 29.300517 80.819494 55.0600055 1.74083625 0.038474 84 47 SH8455 8455 snoRNA cluster 5 snR128 52.394123 166.500257 52.394123 115.106134 83.7501285 1.922985482 -0.049273 84 48 SH9624 9624 RUF3 3' 29.194054 90.535183 59.8646185 1.777170219 -0.117752 84 49 SH16967 16967 YGR034W_7_555923_556666_INTRON_20_496 intron 31.03523 110.529126 31.03523 80.493896 55.764563 1.746358303 0.14596 84 50 SH17865 17865 YLL050C_12_40413_39803_INTRON_15_193 intron 30.057652 103.320714 30.057652 74.263062 52.160357 1.717340555 0.17125 84 51 SH2791 2791 Pro6 tRNA-intron 46 62 40.24485 97.583514 68.914182 1.838308606 0.054503 84 52 SH18833 18833 YNL302C_14_62942_61957_INTRON_21_571 intron 33.53226 119.25244 33.53226 86.72018 60.12622 1.779063902 0.134276 84 53 SH6123 6123 snR39B 5' 27.407537 84.546425 55.976981 1.748009472 -0.132502 84 54 SH19106 19106 YOR312C_15_901173_900242_INTRON_2_427 intron 27.427336 114.837546 27.427336 88.41021 57.918773 1.762819353 -0.175882 84 55 SH19063 19063 YOR293W_15_867094_867848_INTRON_53_489 5' exon 42.497937 145.685274 42.497937 104.187337 73.342637 1.865356521 -0.033897 84 56 SH4614 4614 snR3 5' - 3 3 29.353099 91.130893 60.241996 1.779899353 -0.120626 84 57 SH3327 3327 Thr3 5' flank 27.652917 81.945838 54.7993775 1.738775625 -0.084428 84 58 SH4076 4076 SRP RNA SRP RNA 271 287 232.942038 346.624427 289.7832325 2.462073253 -0.252235 84 59 SH12177 12177 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7771 7790 26.979285 75.716552 51.3479185 1.710522843 -0.052402 84 60 SH3148 3148 Ser4 3' flank 27.448464 75.580051 51.5142575 1.711927445 -0.017468 84 61 SH19592 19592 AEP2/ATP13 2.1 27.520027 74.422256 50.9711415 1.70732436 0.00236 84 62 SH13433 13433 MT COX1 intronic 29.644466 106.218194 29.644466 77.573728 53.609097 1.729238492 0.101502 84 63 SH479 479 Asp2 5' flank 75.260178 141.466018 108.363098 2.034881413 -0.074707 84 64 SH7071 7071 snR62 3' 29.005678 87.538053 58.2718655 1.765458922 -0.074338 84 65 SH20197 20197 YDR005C spliced 26.8469 71.910513 49.3787065 1.693539709 -0.012385 84 66 SH12711 12711 MT ORF 8 (hypothetical) ORF8 26.870563 94.932596 26.870563 69.062033 47.966298 1.680936201 0.028095 84 67 SH17117 17117 YHR010W_8_126513_127484_INTRON_32_592 intron 28.921229 104.319494 28.921229 76.398265 52.659747 1.721478768 0.070251 84 68 SH16748 16748 YGL076C_7_365994_364333_INTRON_565_1032 intron 28.317484 110.686453 28.317484 83.368969 55.8432265 1.746970503 -0.056921 84 69 SH9553 9553 RUF3 RUF3 151 167 34.054954 88.03444 61.044697 1.785647942 0.124358 84 70 SH18409 18409 YMR125W_13_517538_520445_INTRON_26_347 intron 31.090534 120.539121 31.090534 90.448587 60.7695605 1.783686095 -0.032034 84 71 SH11502 11502 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4396 4411 46.056448 84.927394 65.491921 1.816187729 0.452005 84 72 SH16234 16234 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 28.446338 111.069273 28.446338 83.622935 56.0346365 1.748456559 -0.051412 84 73 SH18044 18044 YLR333C_12_796335_795573_INTRON_1_423 intron 30.26096 114.803849 30.26096 85.542889 57.9019245 1.762692999 0.018033 84 74 SH19617 19617 RNA14 1.1 34.463395 89.205729 61.834562 1.791231289 0.107709 84 75 SH12338 12338 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.220927 124.907803 30.220927 95.686876 62.9539015 1.79902265 -0.157097 84 76 SH11880 11880 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6286 6304 51.903598 93.762082 72.83284 1.862327245 0.351307 84 77 SH7582 7582 snR189 5' - 2 -19 2 24.284178 70.789625 47.5369015 1.677030871 -0.189825 84 78 SH19851 19851 Negative Control 26.829554 80.78731 53.808432 1.730850337 -0.127126 84 79 SH3731 3731 Val3 3' flank 24.868658 79.530067 52.1993625 1.717665199 -0.256432 84 80 SH954 954 Gly1 tRNA 21 37 33.251283 88.692461 60.971872 1.785129529 0.088225 84 81 SH10855 10855 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1161 1176 117.113028 175.000648 146.056838 2.164521894 0.048335 84 82 SH4414 4414 telomerase RNA telomerase 1106 1122 27.945431 84.435766 56.1905985 1.749663658 -0.094571 84 83 SH12064 12064 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7206 7225 26.649587 72.906628 49.7781075 1.697038381 -0.039792 84 84 SH9203 9203 snR7 U5 RNA 3' 26.995319 64.305969 45.650644 1.659446909 0.105623 84 85 SH8998 8998 snR17a / U3a U3a 276 295 29.253618 94.133973 61.6937955 1.79024149 -0.175326 84 86 SH21618 21618 copy of SH7319 27.007839 76.582993 51.795416 1.714291325 -0.061283 84 87 SH7223 7223 snR64 3' 31.845674 83.481206 57.66344 1.760900547 0.124091 84 88 SH15307 15307 YAL001C_1_151163_147591_INTRON_71_160 intron 29.505517 114.068624 29.505517 85.563107 57.534312 1.759926924 -0.016169 84 89 SH15340 15340 YAL030W_1_87288_87754_INTRON_103_215 intron 29.103232 103.172859 29.103232 75.069627 52.0864295 1.716724588 0.099636 84 90 SH20296 20296 YEL012W spliced 30.995216 92.942167 61.9686915 1.792172326 -0.078215 84 91 SH10569 10569 RUF8 RUF8 771 787 28.425668 64.322683 46.3741755 1.666276201 0.204663 84 92 SH1945 1945 Lys2 5' flank 25.611548 61.094705 43.3531265 1.637020423 0.059326 84 93 SH17362 17362 YIL052C_9_257061_256224_INTRON_38_509 intron 46.568571 132.259131 46.568571 86.69056 66.6295655 1.823666981 0.41872 84 94 SH5736 5736 snR34 3' 28.747595 99.401562 64.0745785 1.806685758 -0.282911 84 95 SH13289 13289 MT COX1 COX1-ai5a 28.509257 147.363726 28.509257 119.854469 74.181863 1.870297736 -0.654128 84 96 SH392 392 Asn1 41-55 41 55 56.514974 128.759612 92.637293 1.966785856 -0.193408 84 97 SH9612 9612 RUF3 3' 25.843416 76.852232 51.347824 1.710522044 -0.149524 84 98 SH14252 14252 MT tRNA Ser 3' 24.248122 95.817655 24.248122 72.569533 48.4088275 1.684924564 -0.217208 84 99 SH11130 11130 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2536 2553 321.472772 265.577267 293.5250195 2.467645126 0.58662 84 100 SH12719 12719 MT ORF 8 (hypothetical) 3' 24.444912 91.65921 24.444912 68.214298 46.329605 1.665858597 -0.139835 84 101 SH20569 20569 YHR010W spliced 37.031432 85.31627 61.173851 1.786565821 0.259665 84 102 SH18034 18034 YLR316C_12_766358_765266_INTRON_230_285 3' exon 26.634625 111.309087 26.634625 85.674462 56.1545435 1.749384901 -0.199671 84 103 SH1024 1024 Gly2 3' flank 28.680433 74.154258 51.4173455 1.711109652 0.084346 84 104 SH16304 16304 YDR450W_4_1359912_1360787_INTRON_48_482 intron 36.926022 138.133146 36.926022 102.207124 69.566573 1.84240061 -0.111793 85 2 SH7032 7032 snR62 5' 25.537554 80.090765 52.8141595 1.722750373 -0.21206 85 3 SH7476 7476 snR71 5' - 17 -4 17 36.745083 83.543695 60.144389 1.779195117 0.295664 85 4 SH193 193 Arg2 3' flank 25.475861 69.635604 47.5557325 1.677202875 -0.082487 85 5 SH4919 4919 snR9 snR9 1 20 125.551507 218.060985 171.806246 2.235038949 -0.242047 85 6 SH3717 3717 Val3 66-73 + 3' flank 66 26.361161 70.697869 48.529515 1.686005951 -0.031228 85 7 SH12492 12492 MT_tRNA Pro 5' 26.938089 87.394222 26.938089 61.456133 44.197111 1.645393882 0.14772 85 8 SH7828 7828 snoRNA cluster1 intergenic 29.614308 114.457373 29.614308 85.843065 57.7286865 1.761391676 -0.016297 85 9 SH2183 2183 Met2 tRNA 46 60 29.837476 92.861772 61.349624 1.787811905 -0.127827 85 10 SH17809 17809 YKR057W_11_551293_551878_INTRON_25_346 exon/intron 27.268665 103.132438 27.268665 76.863773 52.066219 1.716556041 -0.046692 85 11 SH20928 20928 YLR388W spliced 62.010419 127.348777 94.679598 1.976256405 -0.080423 85 12 SH4019 4019 SRP RNA 5' - 5 5 27.965747 62.782588 45.3741675 1.65680867 0.196504 85 13 SH19533 19533 CBP1 1.2 27.495012 70.019638 48.757325 1.688039871 0.059123 85 14 SH16552 16552 YER133W_5_432491_433954_INTRON_178_702 intron 29.833863 118.572592 29.833863 89.738729 59.786296 1.776601648 -0.075068 85 15 SH1245 1245 Ile2 5' flank 60.863387 104.575679 82.719533 1.917608074 0.278701 85 16 SH13491 13491 MT COX1 intronic 26.413836 82.971541 26.413836 57.557705 41.9857705 1.623102128 0.177584 85 17 SH359 359 Arg5 3' flank 28.750838 77.061289 52.9060635 1.723505449 0.050466 85 18 SH1078 1078 Gly3 3' flank 30.894475 85.589578 58.2420265 1.765236478 0.04492 85 19 SH15694 15694 YBR220C_2_663261_662457_INTRON_302_722 exon/intron 31.956912 120.3471 31.956912 89.390188 60.67355 1.782999406 0.022961 85 20 SH852 852 Glu2 tRNA 26 40 83.981299 148.250506 116.1159025 2.064891702 -0.041142 85 21 SH19907 19907 YAL001C spliced 33.060178 98.34368 65.701929 1.817578121 -0.125857 85 22 SH4183 4183 telomerase RNA 5' 25.978484 78.494402 52.236443 1.717973596 -0.159773 85 23 SH20352 20352 YER117W spliced 25.315956 76.395157 50.8555565 1.706338411 -0.183512 85 24 SH7300 7300 snR66 5' - 11 -9 11 24.338421 83.032459 53.68544 1.729856517 -0.339292 85 25 SH3425 3425 Trp1 5' flank 42.689895 98.050893 70.370394 1.847389983 0.093174 85 26 SH13639 13639 MT ATP6 ATP6 24.110112 92.662788 24.110112 69.552676 46.831394 1.670537085 -0.185357 85 27 SH9957 9957 RUF5-1 RUF5-1 591 606 28.793083 90.124327 59.458705 1.774215446 -0.129226 85 28 SH17168 17168 YHR016C_8_138446_136872_INTRON_48_215 intron 40.384731 222.813324 40.384731 183.428593 111.906662 2.048855942 -1.196788 85 29 SH6946 6946 snR58 81-96 + 3' 91 27.913835 74.122971 51.018403 1.70772686 0.033589 85 30 SH11473 11473 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4251 4268 8478.303156 5556.724349 7017.513753 3.846183272 0.020007 85 31 SH4222 4222 telomerase RNA telomerase 146 158 33.12767 91.729912 62.428791 1.795384924 0.01726 85 32 SH14690 14690 MT 21S rRNA 3' 46.93561 136.641483 46.93561 90.705873 68.8207415 1.837719348 0.332289 85 33 SH17208 17208 YHR039C-A_8_187670_187164_INTRON_4_165 intron 26.363535 104.166112 26.363535 78.802577 52.583056 1.720845823 -0.135236 85 34 SH12651 12651 MT_15S MT_15S 26.514659 96.690826 26.514659 71.176167 48.845413 1.688823786 -0.026517 85 35 SH10161 10161 RUF6 RUF6 651 665 31.192998 92.53322 61.863109 1.791431742 -0.06288 85 36 SH15336 15336 YAL030W_1_87288_87754_INTRON_103_215 intron 36.202978 134.100221 36.202978 98.897243 67.5501105 1.829626064 -0.060162 85 37 SH3697 3697 Val3 5' flank 29.770724 74.586997 52.1788605 1.717494591 0.14882 85 38 SH2587 2587 Pro2 3' flank 27.785304 73.007045 50.3961745 1.702397571 0.039258 85 39 SH9329 9329 RUF1 RUF1 221 237 32.456596 89.691002 61.073799 1.785854935 0.03853 85 40 SH21273 21273 YPL090C spliced 29.564571 72.486562 51.0255665 1.707787835 0.164327 85 41 SH14194 14194 MT COB Exon6 29.086582 116.952159 29.086582 88.865577 58.9760795 1.770675899 -0.093894 85 42 SH1845 1845 Leu9 5' flank 26.901909 84.207575 55.554742 1.744721135 -0.163566 85 43 SH12741 12741 MT COX1 COX1ai1 28.311175 115.321799 28.311175 88.010624 58.1608995 1.764631115 -0.115103 85 44 SH6698 6698 snR49 snR49 16 32 29.318352 72.307191 50.8127715 1.705972883 0.15105 85 45 SH10460 10460 RUF8 RUF8 226 240 31.234185 85.40536 58.3197725 1.765815821 0.06289 85 46 SH1923 1923 Lys1 71-72 + 3' flank 71 90 28.822908 73.213478 51.018193 1.707725072 0.106467 85 47 SH6550 6550 snR46 3' 28.994815 74.8819 51.9383575 1.715488211 0.095111 85 48 SH19345 19345 YPL249C-A_16_76239_75699_INTRON_17_254 exon/intron 29.145797 102.683468 29.145797 74.537671 51.841734 1.714679519 0.10951 85 49 SH19428 19428 YPR132W_16_794960_795762_INTRON_66_430 intron 28.952211 110.643413 28.952211 82.691202 55.8217065 1.746803109 -0.006981 85 50 SH6782 6782 snR50 86-90 + 3' 86 28.376288 88.403468 58.389878 1.766337568 -0.118918 85 51 SH2345 2345 Phe3 tRNA-intron/exon 51 67 265.816499 469.350929 367.583714 2.565356261 -0.575626 85 52 SH10095 10095 RUF6 RUF6 321 337 29.790371 72.237265 51.013818 1.707687828 0.182112 85 53 SH5209 5209 snR13 3' 27.801525 72.303471 50.052498 1.699425757 0.049674 85 54 SH16595 16595 YFL034C-A_6_64931_64242_INTRON_13_333 intron 27.917285 103.677158 27.917285 76.759873 52.338579 1.718821927 -0.001045 85 55 SH20329 20329 YER074W spliced 32.436869 79.948238 56.1925535 1.749678768 0.215604 85 56 SH4268 4268 telomerase RNA telomerase 376 393 27.207229 82.829783 55.018506 1.740508793 -0.125785 85 57 SH8172 8172 snoRNA cluster 3; snR70 26.496775 98.895112 26.496775 73.398337 49.947556 1.698514242 -0.057317 85 58 SH1103 1103 Gly4 5' flank - tRNA3 3 31.460127 94.11747 62.7887985 1.797882173 -0.079063 85 59 SH11476 11476 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4266 4282 22056.48975 10679.9667 16368.22822 4.214001672 0.233104 85 60 SH18087 18087 YLR344W_12_819312_820142_INTRON_20_466 3' exon 34.117377 123.990576 34.117377 90.873199 62.495288 1.795847274 0.061476 85 61 SH18142 18142 YLR406C_12_931752_931062_INTRON_58_406 intron 37.680202 135.800035 37.680202 99.119833 68.4000175 1.835056213 -0.031894 85 62 SH2160 2160 Met2 5' flank 29.05921 84.470863 56.7650365 1.754080921 -0.02135 85 63 SH11465 11465 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4211 4229 13503.25304 10573.99698 12038.62501 4.080576887 -0.391304 85 64 SH15011 15011 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 43.947629 139.114147 43.947629 96.166518 70.0570735 1.845451992 0.157339 85 65 SH13979 13979 MT COB intronic 25.962708 100.459817 25.962708 75.497109 50.7299085 1.705264079 -0.123583 85 66 SH7128 7128 snR63 snR63 146 161 39.773251 103.785548 71.7793995 1.855999821 -0.082291 85 67 SH9285 9285 RUF1 RUF1 1 17 30.818646 82.647024 56.732835 1.753834486 0.095751 85 68 SH7608 7608 snR189 snR189 111 128 26.083374 78.78696 52.435167 1.719622656 -0.155583 85 69 SH20272 20272 YDR447C spliced 38.719745 99.51703 69.1183875 1.839593598 -0.017751 85 70 SH14661 14661 MT 21S rRNA 21S rRNA4 29.269011 109.871168 29.269011 81.602157 55.435584 1.743788627 0.026798 85 71 SH8630 8630 snR19 / U1 RNA 646-668 + 3' 646 25.891819 69.380285 47.636052 1.677935761 -0.047772 85 72 SH2108 2108 Met1 5' flank 24.759995 74.040596 49.4002955 1.693729547 -0.196235 85 73 SH5193 5193 snR13 121-124 + 3' 121 31.107812 74.526598 52.817205 1.722775415 0.232409 85 74 SH8187 8187 snoRNA cluster 3; snR70/intergenic 26.906754 103.450504 26.906754 77.54375 52.225252 1.717880544 -0.080684 85 75 SH3007 3007 Ser2 5' flank - tRNA12 12 69.329954 136.604668 102.967311 2.012699371 -0.097169 85 76 SH14411 14411 MT 21S rRNA 21S rRNA3 221.309195 525.965208 221.309195 305.656013 263.482604 2.420751947 -0.11141 85 77 SH5117 5117 snR11 snR11 186 203 39.39862 100.899435 70.1490275 1.846021655 -0.031906 85 78 SH2891 2891 Pro8 5' flank 27.262095 84.118978 55.6905365 1.745781402 -0.137453 85 79 SH5684 5684 snR34 snR34 341 357 29.700846 76.897138 53.298992 1.726718996 0.113853 85 80 SH12181 12181 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7791 7809 29.479101 85.358913 57.419007 1.759055678 -0.013672 85 81 SH4947 4947 snR9 snR9 141 158 27.301102 89.036894 58.168998 1.764691583 -0.191646 85 82 SH21418 21418 Ser4 spliced 50.704446 111.833712 81.269079 1.909925338 -0.021709 85 83 SH16405 16405 YER056C-A_5_270183_269421_INTRON_38_434 intron 26.663298 101.869174 26.663298 76.205876 51.434587 1.711255257 -0.081272 85 84 SH11705 11705 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5411 5424 105.871251 111.260574 108.5659125 2.035693487 0.726582 85 85 SH6541 6541 snR46 196-197 + 3' 196 28.380016 76.056013 52.2180145 1.717820355 0.039153 85 86 SH15508 15508 YBR048W_2_332790_333771_INTRON_46_556 intron 26.922015 90.221771 26.922015 64.299756 45.6108855 1.659068504 0.100639 85 87 SH15504 15504 YBR048W_2_332790_333771_INTRON_46_556 exon/intron 28.996793 117.210121 28.996793 89.213328 59.1050605 1.771624666 -0.104074 85 88 SH20962 20962 YML025C spliced 28.879274 85.202423 57.0408485 1.756185977 -0.041687 85 89 SH11477 11477 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4271 4284 3037.164694 1523.388119 2280.276407 3.357987494 0.731351 85 90 SH10757 10757 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 671 687 46.964639 113.091684 80.0281615 1.90324284 -0.112424 85 91 SH8559 8559 snR19 / U1 RNA U1 291 308 28.26644 83.231079 55.7487595 1.746235208 -0.058663 85 92 SH16524 16524 YER131W_5_423587_424307_INTRON_1_361 intron 25.700735 94.164579 25.700735 69.463844 47.5822895 1.677445335 -0.063193 85 93 SH602 602 Gln1 tRNA 51 65 31.873861 125.535188 78.7045245 1.895999699 -0.656891 85 94 SH13597 13597 MT ATP8/AAP1 5' / ATP8 29.751872 126.663317 29.751872 97.911445 63.8316585 1.805036129 -0.213587 85 95 SH6083 6083 snR37 snR37 331 350 27.531521 75.430929 51.481225 1.711648872 -0.009776 85 96 SH4856 4856 snR8 snR8 61 76 727.740924 625.06083 676.400877 2.830204162 0.256369 85 97 SH21012 21012 YML124C spliced 30.72676 95.88228 63.30452 1.80143472 -0.138036 85 98 SH10935 10935 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1561 1578 98.257971 119.454069 108.85602 2.036852452 0.517731 85 99 SH8145 8145 snoRNA cluster 3; intergenic 26.64855 91.10906 26.64855 65.46051 46.05453 1.663272355 0.063511 85 100 SH11795 11795 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5861 5879 41.039872 89.098382 65.069127 1.81337498 0.25823 85 101 SH15958 15958 YDL130W_4_229906_230527_INTRON_115_415 intron 42.867587 154.447971 42.867587 112.580384 77.7239855 1.890555062 -0.18362 85 102 SH7526 7526 snR79 5' 26.413589 73.654964 50.0342765 1.699267624 -0.066722 85 103 SH2672 2672 Pro4 tRNA-exon/intron 26 38 26.593699 65.992161 46.29293 1.665514669 0.051781 85 104 SH11832 11832 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6046 6059 30387.26012 17908.07194 24147.66603 4.382875161 -0.164974 86 2 SH2993 2993 Ser2 5' flank 28.635759 78.747091 53.691425 1.729904931 0.021242 86 3 SH16681 16681 YGL030W_7_439087_439634_INTRON_4_233 intron 29.393728 106.484695 29.393728 78.090967 53.7423475 1.730316633 0.078844 86 4 SH2520 2520 Pro1 3' flank 34.411409 85.196689 59.804049 1.776730589 0.196333 86 5 SH16611 16611 YFL034C-B_6_63992_63015_INTRON_21_134 intron/exon 41.012216 145.85807 41.012216 105.845854 73.429035 1.865867821 -0.09643 86 6 SH9671 9671 RUF4 RUF4 131 150 26.042485 69.403886 47.7231855 1.678729425 -0.036925 86 7 SH20336 20336 YER074W-A spliced 26.843675 68.664773 47.754224 1.679011792 0.031703 86 8 SH2294 2294 Phe2 tRNA 66 80 33.245171 78.480848 55.8630095 1.747124329 0.277205 86 9 SH1026 1026 Gly2 3' flank 27.565103 74.226448 50.8957755 1.706681736 0.00804 86 10 SH5083 5083 snR11 snR11 16 32 103.507754 156.556818 130.032286 2.114051198 0.096356 86 11 SH6433 6433 snR45 snR45 11 32 40.01756 97.582116 68.799838 1.837587416 0.049873 86 12 SH16592 16592 YFL034C-A_6_64931_64242_INTRON_13_333 intron 25.333754 99.411096 25.333754 75.077342 50.205548 1.700751712 -0.165461 86 13 SH5241 5241 snR30 snR30 56 71 37.766342 95.055628 66.410985 1.822239922 0.056342 86 14 SH8533 8533 snR19 / U1 RNA U1 161 178 29.2353 86.706087 57.9706935 1.763208496 -0.049011 86 15 SH1655 1655 Leu5 3' flank 29.740617 88.239527 58.990072 1.770778926 -0.053195 86 16 SH760 760 Gln4 71-72 + 3' flank 71 32.200966 117.966531 75.0837485 1.875545946 -0.520226 86 17 SH2553 2553 Pro2 tRNA 1 13 226.454247 295.369977 260.912112 2.41649424 -0.026643 86 18 SH17643 17643 YJR145C_10_702761_701720_INTRON_15_270 intron 36.650563 132.12526 36.650563 96.474697 66.56263 1.823230473 0.001102 86 19 SH5887 5887 snR35 3' 34.488379 86.839568 60.6639735 1.782930853 0.162918 86 20 SH18225 18225 YML026C_13_223828_222987_INTRON_48_448 intron 25.55437 103.001146 25.55437 78.446776 52.000573 1.716008129 -0.19089 86 21 SH5391 5391 snR31 snR31 21 37 27.705335 83.317949 55.511642 1.744384074 -0.097485 86 22 SH11173 11173 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2751 2766 226.126245 249.968072 238.0471585 2.376663002 0.245504 86 23 SH7566 7566 snR189 5' 27.636618 70.423664 49.030141 1.690463142 0.063495 86 24 SH443 443 Asp1 tRNA 36 48 33.602458 100.37322 66.987839 1.825995968 -0.153431 86 25 SH20287 20287 YDR471W spliced 37.741902 80.113133 58.9275175 1.770318146 0.403688 86 26 SH5709 5709 snR34 snR34 466 486 25.343365 69.325431 47.334398 1.675176858 -0.088245 86 27 SH4871 4871 snR8 snR8 136 152 28.212083 73.728869 50.970476 1.707318689 0.059084 86 28 SH3285 3285 Thr2 tRNA 26 40 28.629148 90.075857 59.3525025 1.773439035 -0.136036 86 29 SH4677 4677 snR4 5' 29.014716 78.75977 53.887243 1.731485965 0.045852 86 30 SH7946 7946 snoRNA cluster1 3' 29.306357 120.095351 29.306357 91.788994 60.5476755 1.782097475 -0.133891 86 31 SH15531 15531 YBR048W_2_332790_333771_INTRON_46_556 3' exon 29.310292 119.256241 29.310292 90.945949 60.1281205 1.779077629 -0.119437 86 32 SH21203 21203 YOL127W spliced 71.24117 124.7627 98.001935 1.991234651 0.098503 86 33 SH13064 13064 MT COX1 intronic 26.985388 112.680553 26.985388 86.695165 56.8402765 1.754656182 -0.186877 86 34 SH7660 7660 snoRNA cluster1 5' / snR78 39.669654 137.940516 39.669654 99.270862 69.470258 1.841798912 0.007298 86 35 SH10189 10189 RUF6 RUF6 791 808 33.823353 90.470536 62.1469445 1.793419781 0.063096 86 36 SH9522 9522 RUF3 5' - 14 -4 14 31.832256 98.291171 65.0617135 1.813325497 -0.157123 86 37 SH15732 15732 YBR230C_2_680008_679507_INTRON_12_108 intron 27.577758 95.703452 27.577758 69.125694 48.351726 1.684411982 0.07724 86 38 SH13996 13996 MT COB intronic 30.040911 105.912736 30.040911 76.871825 53.456368 1.727999448 0.135633 86 39 SH9828 9828 RUF5-1 5' 27.394412 74.207262 50.800837 1.705870868 -0.003674 86 40 SH18680 18680 YNL112W_14_413636_416278_INTRON_1274_2275 intron 26.717516 116.042639 26.717516 90.325123 58.5213195 1.76731411 -0.246741 86 41 SH17364 17364 YIL052C_9_257061_256224_INTRON_38_509 intron 46.861498 159.990762 46.861498 114.129264 80.495381 1.90577096 -0.132583 86 42 SH7808 7808 snoRNA cluster1 intergenic 26.411092 98.694269 26.411092 73.283177 49.8471345 1.697640198 -0.062048 86 43 SH211 211 Arg3 5' flank 29.121307 85.131572 57.1264395 1.756837157 -0.02589 86 44 SH18419 18419 YMR133W_13_536206_537608_INTRON_1243_1358 intron 26.680474 92.410313 26.680474 66.729839 46.7051565 1.669364832 0.047388 86 45 SH21918 21918 copy of SH20001 37.318101 84.045584 60.6818425 1.783058759 0.296728 86 46 SH12726 12726 MT COX1 5' / exon1 30.312377 122.850251 30.312377 93.537874 61.9251255 1.791866895 -0.117914 86 47 SH12432 12432 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.469702 104.021793 28.469702 76.552091 52.5108965 1.720249433 0.038589 86 48 SH20383 20383 YFL034C-A spliced 31.137018 89.922953 60.5299855 1.78197057 -0.021018 86 49 SH6562 6562 snR47 5' 26.633659 67.74759 47.1906245 1.673855725 0.029481 86 50 SH15716 15716 YBR220C_2_663261_662457_INTRON_302_722 3' exon 28.643235 97.496085 28.643235 69.85285 49.2480425 1.692388973 0.140202 86 51 SH9254 9254 snR6 / U6 RNA 3' 27.03311 80.435031 53.7340705 1.730249741 -0.108509 86 52 SH17604 17604 YJL205C-A_10_50443_50139_INTRON_33_175 intron 27.783113 109.068905 27.783113 82.285792 55.0344525 1.74063465 -0.079723 86 53 SH16360 16360 YEL012W_5_131772_132551_INTRON_6_128 exon/intron 30.058189 116.284212 30.058189 87.226023 58.642106 1.768209559 -0.021108 86 54 SH11745 11745 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5611 5628 648.26786 573.308395 610.7881275 2.785890587 0.243861 86 55 SH12055 12055 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7161 7179 28.578991 73.986774 51.2828825 1.709972428 0.079934 86 56 SH4355 4355 telomerase RNA telomerase 811 828 26.712767 73.206085 49.959426 1.69861744 -0.039165 86 57 SH2746 2746 Pro5 3' flank 29.354141 73.437155 51.395648 1.710926346 0.137823 86 58 SH12150 12150 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7636 7653 183.844848 227.635472 205.74016 2.313319073 0.146159 86 59 SH7242 7242 snR65 5' - 7 -14 7 29.512331 94.991481 62.251906 1.794152653 -0.17757 86 60 SH21314 21314 YPL241C spliced 34.19159 84.768055 59.4798225 1.774369664 0.195559 86 61 SH15087 15087 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.119214 98.717753 27.119214 72.598539 49.8588765 1.697742488 -0.002087 86 62 SH12438 12438 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.612347 111.988931 26.612347 86.376584 56.4944655 1.752005904 -0.209419 86 63 SH19608 19608 RNA14 1.1 27.93273 73.77324 50.852985 1.70631645 0.039431 86 64 SH775 775 Gln4 3' flank 25.329548 74.090425 49.7099865 1.696443645 -0.153083 86 65 SH9778 9778 RUF4 RUF4 666 681 29.886036 95.312454 62.599245 1.796569095 -0.165947 86 66 SH14508 14508 MT 21S rRNA 21S rRNA3 34.776912 122.568785 34.776912 88.791873 61.7843925 1.790878781 0.124892 86 67 SH19183 19183 YPL079W_16_406631_407534_INTRON_12_432 intron 27.372604 98.709881 27.372604 72.337277 49.8549405 1.697708202 0.019283 86 68 SH17712 17712 YKL081W_11_282533_284097_INTRON_206_531 intron 29.711704 120.216932 29.711704 91.505228 60.608466 1.782533292 -0.110715 86 69 SH14673 14673 MT 21S rRNA 21S rRNA4 25.942603 104.824097 25.942603 79.881494 52.9120485 1.723554576 -0.179244 86 70 SH10660 10660 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 186 203 29.778589 89.163533 59.471061 1.774305687 -0.067602 86 71 SH3200 3200 Ser5 3' flank 25.166928 87.010074 56.088501 1.748873833 -0.321956 86 72 SH18426 18426 YMR142C_13_551206_550205_INTRON_5_406 5' exon 40.251975 137.888016 40.251975 98.636041 69.444008 1.841634778 0.03252 86 73 SH21829 21829 copy of SH16329 28.574434 92.008046 60.29124 1.780254216 -0.171429 86 74 SH21219 21219 YOR122C spliced 27.959525 91.862395 59.91096 1.777506279 -0.198095 86 75 SH9838 9838 RUF5-1 5' - 16 -4 16 25.695885 64.378691 45.037288 1.653572231 0.012264 86 76 SH7237 7237 snR65 5' 36.040922 96.688354 66.364638 1.82193673 -0.017601 86 77 SH7335 7335 snR66 3' 27.201171 79.891584 53.5463775 1.728730095 -0.090044 86 78 SH9853 9853 RUF5-1 RUF5-1 71 87 27.810777 87.243358 57.5270675 1.759872236 -0.136421 86 79 SH7898 7898 snoRNA cluster1 intergenic 34.884028 125.743077 34.884028 91.859049 63.3715385 1.801894251 0.058559 86 80 SH19379 19379 YPR043W_16_654161_654842_INTRON_3_405 intron 32.546715 118.766264 32.546715 87.219549 59.883132 1.777304507 0.085466 86 81 SH1483 1483 Leu2 3' flank 32.51344 83.031609 57.7725245 1.761721345 0.160219 86 82 SH2699 2699 Pro4 3' flank 28.452105 83.392725 55.922415 1.747585918 -0.04827 86 83 SH10262 10262 RUF7 5' 26.734332 79.037215 52.8857735 1.723338861 -0.111897 86 84 SH5861 5861 snR35 snR35 491 507 29.333034 83.333368 56.333201 1.75076443 0.009896 86 85 SH16014 16014 YDL137W_4_216158_217074_INTRON_1_332 intron 52.274751 158.948093 52.274751 107.673342 79.9740465 1.902949071 0.08106 86 86 SH2841 2841 Pro7 tRNA 11 28 30.991728 76.210216 53.600972 1.729172665 0.202999 86 87 SH5804 5804 snR35 snR35 206 223 39.733984 97.686566 68.710275 1.837021687 0.041815 86 88 SH10719 10719 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 481 499 28.46972 87.440694 57.955207 1.763092461 -0.097579 86 89 SH17092 17092 YHL001W_8_104270_105084_INTRON_130_527 intron 28.698891 99.799051 28.698891 72.10016 50.3995255 1.702426448 0.113555 86 90 SH9135 9135 snR7 U5 RNA 5' 26.449991 79.938392 53.1941915 1.725864212 -0.143395 86 91 SH7646 7646 snoRNA cluster1 5' 26.212233 100.32975 26.212233 75.117517 50.664875 1.704706976 -0.100326 86 92 SH16891 16891 YGL189C_7_148970_148233_INTRON_1_368 3' exon 39.289145 183.253843 39.289145 144.964698 92.1269215 1.964386559 -0.766461 86 93 SH15290 15290 MT 9S rRNA 9S 28.021809 126.92644 28.021809 99.904631 63.96322 1.805930319 -0.324945 86 94 SH14984 14984 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.350506 95.521628 28.350506 68.171122 48.260814 1.683594643 0.143804 86 95 SH12814 12814 MT COX1 COX1ai1 28.303896 110.06556 28.303896 82.761664 55.53278 1.744549415 -0.050505 86 96 SH16859 16859 YGL187C_7_150529_149708_INTRON_1_342 exon/intron 29.723918 100.500164 29.723918 71.776246 50.750082 1.705436748 0.184314 86 97 SH1568 1568 Leu4 tRNA 11 23 46.614708 107.200658 76.907683 1.885969728 -0.01248 86 98 SH13897 13897 MT COB intronic 24.782078 89.925543 24.782078 66.143465 45.4627715 1.657655908 -0.082901 86 99 SH12119 12119 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7481 7499 31.401295 87.003942 59.2026185 1.772340916 0.041343 86 100 SH7217 7217 snR64 3' 26.759098 65.096606 45.927852 1.662076134 0.076833 86 101 SH20688 20688 YIL133C spliced 32.865596 85.015355 58.9404755 1.770413635 0.138113 86 102 SH11126 11126 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2516 2531 4061.473169 3229.186456 3645.329813 3.561736827 -0.078528 86 103 SH14717 14717 MT tRNA cys; tRNA his 5' 26.863838 104.942544 26.863838 79.078706 52.971272 1.724040402 -0.103317 86 104 SH16608 16608 YFL034C-B_6_63992_63015_INTRON_21_134 intron 35.499517 135.453164 35.499517 100.953647 68.226582 1.833953615 -0.118755 87 2 SH6136 6136 snR39B snR39B 21 38 29.303163 88.031143 58.667153 1.768395013 -0.06937 87 3 SH21678 21678 copy of SH9841 26.574785 74.139512 50.3571485 1.70206113 -0.061297 87 4 SH1512 1512 Leu3 tRNA-exon/intron 31 48 27.040391 73.075565 50.057978 1.699473303 -0.013977 87 5 SH17803 17803 YKL190W_11_82949_83552_INTRON_53_128 intron 38.654738 146.061543 38.654738 108.406805 73.5307715 1.866469123 -0.195617 87 6 SH1828 1828 Leu8 3' flank 29.990709 81.366243 55.678476 1.74568734 0.075592 87 7 SH3240 3240 Thr1 tRNA 56 72 59.64423 117.908874 88.776552 1.948298273 0.027118 87 8 SH12311 12311 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.258384 139.281392 34.258384 106.023008 70.140696 1.845970071 -0.249093 87 9 SH4008 4008 SRP RNA 5' 27.581257 70.198941 48.890099 1.689220917 0.062701 87 10 SH3887 3887 RNaseP 3' 29.465707 78.843798 54.1547525 1.733636575 0.073846 87 11 SH21565 21565 copy of SH5225 26.068121 87.267854 56.6679875 1.753337789 -0.258629 87 12 SH675 675 Gln3 5' flank 27.133745 71.459634 49.2966895 1.692817755 0.014118 87 13 SH20403 20403 YFR031C-A spliced 37.136953 88.252152 62.6945525 1.797229807 0.193394 87 14 SH9476 9476 RUF2 RUF2 221 237 30.876353 75.855274 53.3658135 1.727263134 0.200645 87 15 SH19385 19385 YPR043W_16_654161_654842_INTRON_3_405 intron 27.036224 109.451038 27.036224 83.414814 55.225519 1.742139806 -0.144712 87 16 SH14985 14985 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.200705 105.036507 27.200705 78.835802 53.0182535 1.724425417 -0.076757 87 17 SH18880 18880 YNR053C_14_723108_721117_INTRON_811_1341 intron/exon 40.642759 149.826764 40.642759 110.184005 75.413382 1.877448418 -0.185659 87 18 SH18182 18182 YLR448W_12_1028848_1029762_INTRON_16_399 intron/exon 25.472261 97.728268 25.472261 73.256007 49.364134 1.693411523 -0.131395 87 19 SH15416 15416 YBL059W_2_110555_111205_INTRON_287_355 exon/intron 27.757866 105.606359 27.757866 78.848493 53.3031795 1.726753115 -0.038714 87 20 SH9858 9858 RUF5-1 RUF5-1 96 118 26.389835 81.87841 54.1341225 1.733471101 -0.171694 87 21 SH12115 12115 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7461 7478 42.807581 100.160029 71.483805 1.854207661 0.052284 87 22 SH11554 11554 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4656 4671 35.252013 94.443506 64.8477595 1.811894976 0.011184 87 23 SH15582 15582 YBR084C-A_2_415219_414144_INTRON_3_508 intron 27.783071 104.534056 27.783071 77.750985 52.767028 1.722362634 -0.022969 87 24 SH1201 1201 Ile1 5' flank 27.868992 78.535407 53.2021995 1.725929587 -0.027202 87 25 SH16444 16444 YER074W_5_306319_307192_INTRON_4_469 intron 30.423573 114.433326 30.423573 85.009753 57.716663 1.761301214 0.034878 87 26 SH2510 2510 Pro1 tRNA 41 53 132.876663 186.109679 159.493171 2.202742093 0.093876 87 27 SH4974 4974 snR10 5' 29.592995 87.488972 58.5409835 1.767460014 -0.04664 87 28 SH8960 8960 snR17a / U3a U3a 86 103 27.417594 74.573441 50.9955175 1.707532003 -0.006769 87 29 SH18296 18296 YML073C_13_124172_123227_INTRON_16_430 intron 27.491703 111.346728 27.491703 84.855025 56.173364 1.749530433 -0.130373 87 30 SH12093 12093 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7351 7376 30.063039 76.978774 53.5209065 1.728523461 0.135628 87 31 SH21801 21801 copy of SH15071 27.913103 80.563854 54.2384785 1.734307498 -0.049754 87 32 SH15226 15226 MT COX3 cox3 30.323113 102.894757 30.323113 73.571644 51.9473785 1.715563636 0.197183 87 33 SH20480 20480 YGL226C-A spliced 27.77403 87.668975 57.7215025 1.761337627 -0.143785 87 34 SH7595 7595 snR189 snR189 46 62 27.532197 74.867831 51.200014 1.70927008 -0.002516 87 35 SH5113 5113 snR11 snR11 166 190 27.462093 68.642514 48.0523035 1.681714211 0.075877 87 36 SH1086 1086 Gly4 5' flank 27.56994 85.719083 56.6445115 1.753157836 -0.135162 87 37 SH14987 14987 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.558614 94.909404 27.558614 68.35079 47.954702 1.680831197 0.086721 87 38 SH6409 6409 snR43 3' 29.568386 76.101774 52.83508 1.722922369 0.115841 87 39 SH18896 18896 YOL120C_15_94401_93394_INTRON_113_559 intron 26.787326 104.908257 26.787326 79.120931 52.9541285 1.723899825 -0.109226 87 40 SH20858 20858 YLR078C spliced 511.018725 466.865744 488.9422345 2.689257553 0.266879 87 41 SH9563 9563 RUF3 RUF3 201 217 28.232567 72.017482 50.1250245 1.700054598 0.083106 87 42 SH20946 20946 YLR448W spliced 46.847845 103.963126 75.4054855 1.877402941 0.053996 87 43 SH17745 17745 YKL157W_11_154993_158183_INTRON_282_664 exon/intron 26.593535 99.682297 26.593535 74.088762 50.3411485 1.701923119 -0.059281 87 44 SH5719 5719 snR34 snR34 516 534 28.581005 92.429157 60.505081 1.781791847 -0.178186 87 45 SH16554 16554 YER133W_5_432491_433954_INTRON_178_702 intron 25.637194 91.642945 25.637194 67.005751 46.3214725 1.665782357 -0.032655 87 46 SH3355 3355 Thr3 3' flank 43.166956 97.606944 70.38695 1.847492147 0.111821 87 47 SH10686 10686 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 316 333 28.13271 74.569367 51.3510385 1.710549231 0.042426 87 48 SH2119 2119 Met1 5' flank 28.660751 91.728403 60.194577 1.779557367 -0.162683 87 49 SH21649 21649 copy of SH8769 40.338857 100.824899 70.581878 1.84869321 -0.010978 87 50 SH17802 17802 YKL190W_11_82949_83552_INTRON_53_128 intron 65.586693 192.575925 65.586693 127.989232 96.7879625 1.985821348 -0.034246 87 51 SH7406 7406 snR69 5' 28.020334 79.060251 53.5402925 1.728680739 -0.023667 87 52 SH19227 19227 YPL090C_16_378390_377286_INTRON_7_400 intron 38.678125 137.661595 38.678125 99.98347 69.3307975 1.840926196 -0.028281 87 53 SH10226 10226 RUF6 RUF6 976 993 29.755638 68.438833 49.0972355 1.691057039 0.233202 87 54 SH10009 10009 RUF5-1 3' 30.430153 88.514807 59.47248 1.774316049 -0.027337 87 55 SH3107 3107 Ser4 5' flank 28.871307 86.78268 57.8269935 1.762130613 -0.067146 87 56 SH11664 11664 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5206 5219 38.735605 95.244424 66.9900145 1.826010072 0.073098 87 57 SH2827 2827 Pro7 5' flank 32.062693 83.614687 57.83869 1.762218448 0.130709 87 58 SH20284 20284 YDR471W spliced 31.108785 98.347294 64.7280395 1.811092453 -0.177933 87 59 SH6400 6400 snR43 3' 29.921704 72.958394 51.440049 1.711301374 0.180455 87 60 SH3040 3040 Ser2 3' flank 29.838236 89.072324 59.45528 1.774190429 -0.063341 87 61 SH13090 13090 MT COX1 COX1ai3 27.300957 99.302958 27.300957 73.002001 50.151479 1.700283745 0.005458 87 62 SH13175 13175 MT COX1 Exon4 26.673438 115.067293 26.673438 89.393855 58.0336465 1.76367986 -0.239476 87 63 SH2489 2489 Pro1 5' flank 48.377645 104.208108 76.2928765 1.88248399 0.077036 87 64 SH5936 5936 snR36 snR36 136 148 40.919683 91.367739 66.143711 1.820488557 0.203939 87 65 SH2341 2341 Phe3 tRNA-exon/intron 31 48 27.82541 77.604467 52.7149385 1.721933704 -0.018212 87 66 SH2893 2893 Pro8 5' flank - tRNA3 3 28.160214 85.349853 56.7550335 1.754004384 -0.090925 87 67 SH1266 1266 Ile2 tRNA exon/intron 26 42 28.600895 70.355594 49.4782445 1.694414282 0.130471 87 68 SH11548 11548 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4626 4641 257.208921 260.006654 258.6077875 2.412641599 0.341088 87 69 SH20705 20705 YJL024C spliced 28.703962 71.901671 50.3028165 1.701592302 0.11654 87 70 SH6035 6035 snR37 snR37 91 107 39.23459 86.369711 62.8021505 1.797974515 0.284141 87 71 SH9637 9637 RUF4 5' 29.743819 87.703879 58.723849 1.768814513 -0.043631 87 72 SH19417 19417 YPR132W_16_794960_795762_INTRON_66_430 intron 25.397518 90.198193 25.397518 65.800675 45.5990965 1.658956238 -0.031769 87 73 SH9808 9808 RUF4 3' 41.36017 91.33486 66.347515 1.821824661 0.213491 87 74 SH20450 20450 YGL137W spliced 26.432755 90.52777 58.4802625 1.767009313 -0.269175 87 75 SH9 9 Ala1 5' flank 26.651563 81.837781 54.244672 1.734357088 -0.152602 87 76 SH9029 9029 snR17a / U3a U3a 431 448 28.391958 73.971402 51.18168 1.709114537 0.067771 87 77 SH11142 11142 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2596 2609 46.288424 97.702741 71.9955825 1.85730585 0.169671 87 78 SH15247 15247 MT tRNA fMet tRNA 26.353835 102.196666 26.353835 76.842831 51.598333 1.712635671 -0.111741 87 79 SH2582 2582 Pro2 3' flank 26.807716 75.805869 51.3067925 1.710174865 -0.065819 87 80 SH7519 7519 snR79 5' 27.999921 75.811138 51.9055295 1.715213626 0.016976 87 81 SH16522 16522 YER131W_5_423587_424307_INTRON_1_361 intron 31.379466 119.132777 31.379466 88.753311 60.0663885 1.778631521 0.009617 87 82 SH17295 17295 YHR141C_8_382752_381991_INTRON_5_445 intron 26.826573 88.934268 26.826573 63.107695 44.967134 1.652895209 0.113017 87 83 SH8362 8362 snoRNA cluster4 3' 28.957461 103.654065 28.957461 75.696604 52.3270325 1.718726106 0.081848 87 84 SH3586 3586 Val1 5' flank 29.823861 81.280487 55.552174 1.744701059 0.066136 87 85 SH17289 17289 YHR141C_8_382752_381991_INTRON_5_445 intron 28.429728 109.323978 28.429728 81.89425 55.161989 1.741639917 -0.031598 87 86 SH4306 4306 telomerase RNA telomerase 566 584 28.047975 74.224116 51.1360455 1.70872714 0.041389 87 87 SH9174 9174 snR7 U5 RNA U5 141 155 32.228019 82.385609 57.306814 1.758206264 0.160501 87 88 SH4180 4180 telomerase RNA 5' 28.201483 76.480538 52.3410105 1.718842103 0.021689 87 89 SH7469 7469 snR71 5' 28.930208 75.789502 52.359855 1.718998435 0.078846 87 90 SH9587 9587 RUF3 RUF3 321 342 29.321782 77.237384 53.279583 1.726560817 0.08523 87 91 SH11377 11377 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3771 3784 7678.660546 4555.763102 6117.211824 3.786553519 0.205442 87 92 SH18752 18752 YNL162W_14_331319_332151_INTRON_5_516 intron 28.491095 96.409424 28.491095 68.918329 48.704712 1.68757098 0.14287 87 93 SH18147 18147 YLR406C_12_931752_931062_INTRON_58_406 intron 39.937703 174.716628 39.937703 135.778925 87.858314 1.943782865 -0.621421 87 94 SH13921 13921 MT COB Cytbi3 24.475744 81.095601 24.475744 57.619857 41.0478005 1.613289891 0.036521 87 95 SH1048 1048 Gly3 5' flank 33.533262 103.670916 68.602089 1.836337341 -0.220837 87 96 SH12216 12216 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.249165 110.278571 28.249165 83.029406 55.6392855 1.745381544 -0.057386 87 97 SH21599 21599 copy of SH6670 27.577386 79.626189 53.6017875 1.729179273 -0.060831 87 98 SH8139 8139 snoRNA cluster 3; intergenic 43.096243 133.854806 43.096243 91.758563 67.427403 1.828836433 0.237774 87 99 SH5436 5436 snR31 3' 25.738064 63.78989 44.763977 1.650928664 0.024666 87 100 SH980 980 Gly1 3' flank 27.949654 85.337278 56.643466 1.75314982 -0.104919 87 101 SH21201 21201 YOL127W spliced 32.13513 96.934477 64.5348035 1.809793992 -0.120805 87 102 SH9353 9353 RUF1 RUF1 341 362 29.817492 70.690453 50.2539725 1.701170398 0.205498 87 103 SH6087 6087 snR37 snR37 351 367 29.726983 76.10942 52.9182015 1.723605076 0.125819 87 104 SH20070 20070 YCR028C-A spliced 34.022204 97.040992 65.531598 1.816450758 -0.074262 88 2 SH11728 11728 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5526 5546 52.690791 100.205805 76.448298 1.883367821 0.231336 88 3 SH592 592 Gln1 tRNA 1 17 258.582786 364.840362 311.711574 2.493752928 -0.203579 88 4 SH14095 14095 MT COB Cytbi4 26.434249 110.40705 26.434249 84.972801 55.703525 1.745882679 -0.205666 88 5 SH18790 18790 YNL301C_14_64561_63569_INTRON_113_544 intron 27.789733 98.295002 27.789733 71.505269 49.647501 1.695897393 0.05951 88 6 SH18758 18758 YNL162W_14_331319_332151_INTRON_5_516 intron 32.8758 123.446637 32.8758 91.570837 62.2233185 1.793953169 0.014262 88 7 SH3516 3516 Tyr1 3' flank 28.111725 81.904027 55.007876 1.740424876 -0.052912 88 8 SH17271 17271 YHR123W_8_354817_356083_INTRON_51_141 intron 27.003958 93.511851 27.003958 67.507893 47.2559255 1.674456273 0.059473 88 9 SH3834 3834 RNaseP RNaseP 136 150 29.915829 79.606034 54.7609315 1.738470827 0.092779 88 10 SH14339 14339 MT VAR1 includes 5’ processing site VAR1 27.129773 102.869531 27.129773 76.739758 51.9347655 1.715458175 -0.054697 88 11 SH15363 15363 YBL027W_2_168385_169338_INTRON_3_386 5' exon 28.24472 119.045973 28.24472 91.801253 60.0229865 1.7783176 -0.183482 88 12 SH10826 10826 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1016 1034 42.31544 95.697378 69.006409 1.838889428 0.136038 88 13 SH6758 6758 snR50 5' 28.531618 85.332548 56.932083 1.755357074 -0.066034 88 14 SH20169 20169 YDL136W spliced 26.392997 78.605394 52.4991955 1.720152648 -0.130643 88 15 SH12236 12236 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.722128 106.347371 26.722128 80.625243 53.6736855 1.729761417 -0.132674 88 16 SH3842 3842 RNaseP RNaseP 176 188 38.103085 101.529561 69.816323 1.843956972 -0.072257 88 17 SH17918 17918 YLR061W_12_263195_263949_INTRON_13_401 intron/exon 27.753563 81.684316 27.753563 54.930753 41.342158 1.616393142 0.317536 88 18 SH5690 5690 snR34 snR34 371 387 206.134669 326.781463 266.458066 2.425628871 -0.309473 88 19 SH14931 14931 MT tRNA Asn 5' / tRNA 26.261132 95.318875 26.261132 70.057743 48.1594375 1.682681406 -0.029822 88 20 SH3272 3272 Thr2 5' flank 52.30985 98.824392 75.567121 1.878332877 0.252511 88 21 SH2249 2249 Phe1 3' flank 28.05122 68.822708 48.436964 1.685176914 0.114238 88 22 SH10683 10683 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 301 316 120.539673 220.660641 170.600157 2.231979427 -0.310665 88 23 SH17946 17946 YLR128W_12_398531_399434_INTRON_4_97 intron 32.855937 121.939472 32.855937 90.083535 61.469736 1.788661348 0.046998 88 24 SH1888 1888 Leu9 3' flank 28.573349 86.526532 57.5499405 1.760044879 -0.077193 88 25 SH14737 14737 MT tRNA cys; tRNA his 3' 29.1965 101.076685 29.1965 72.880185 51.0383425 1.707896562 0.1353 88 26 SH1149 1149 His1 5' flank 27.590233 84.248274 55.9192535 1.747561365 -0.116447 88 27 SH21107 21107 YNL069C spliced 30.317464 74.25129 52.284377 1.718371938 0.187625 88 28 SH15123 15123 MT tRNA Phe 5' 27.863708 101.725945 27.863708 74.862237 51.3629725 1.710650149 0.020399 88 29 SH10751 10751 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 641 658 39.85478 105.906893 72.8808365 1.862613349 -0.122136 88 30 SH2660 2660 Pro4 5' flank 30.534205 75.303005 52.918605 1.723608387 0.186966 88 31 SH12524 12524 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.521125 98.76198 28.521125 71.240855 49.88099 1.697935064 0.113094 88 32 SH7784 7784 snoRNA cluster1 intergenic 28.583361 102.735665 28.583361 75.152304 51.8678325 1.7148981 0.064573 88 33 SH2168 2168 Met2 5' flank 30.674664 91.117958 60.896311 1.784590985 -0.061464 88 34 SH17040 17040 YGR183C_7_859471_859058_INTRON_4_216 intron 30.2625 120.387038 30.2625 91.124538 60.693519 1.783142319 -0.079682 88 35 SH18983 18983 YOR096W_15_505793_506766_INTRON_145_545 intron 30.05533 114.7831 30.05533 85.72777 57.89155 1.762615178 0.005568 88 36 SH3812 3812 RNaseP RNaseP 26 43 27.6029 92.15289 59.877895 1.777266524 -0.220161 88 37 SH16192 16192 YDR381C-A_4_1238839_1238301_INTRON_27_220 5' exon 31.900097 120.930187 31.900097 90.03009 60.9650935 1.785081244 0.009545 88 38 SH1110 1110 Gly4 tRNA 26 38 31.25115 83.522728 57.386939 1.75881306 0.098098 88 39 SH3426 3426 Trp1 5' flank 42.23154 108.69441 75.462975 1.877733923 -0.125184 88 40 SH16034 16034 YDL191W_4_117665_118518_INTRON_4_494 intron 28.499177 103.129631 28.499177 75.630454 52.0648155 1.716544334 0.052665 88 41 SH7790 7790 snoRNA cluster1 snR75 30.959157 118.563558 30.959157 88.604401 59.781779 1.776568835 -0.005834 88 42 SH13865 13865 MT COB intronic 26.615203 94.595713 26.615203 68.98051 47.7978565 1.679408421 0.01084 88 43 SH6882 6882 snR56 snR56 41 58 26.643691 71.306453 48.975072 1.689975083 -0.018923 88 44 SH11127 11127 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2521 2534 4486.830841 3659.10883 4072.969836 3.609911194 -0.146851 88 45 SH18794 18794 YNL301C_14_64561_63569_INTRON_113_544 intron 42.471751 153.291829 42.471751 111.820078 77.1459145 1.887312932 -0.177827 88 46 SH4479 4479 U3b (snR17b) 5' 27.646677 73.956779 50.801728 1.705878485 0.017223 88 47 SH21130 21130 YNL130C spliced 30.411595 88.245059 59.328327 1.773262102 -0.023431 88 48 SH19876 19876 Negative Control 28.801418 77.8129 53.307159 1.726785537 0.04406 88 49 SH9683 9683 RUF4 RUF4 191 210 26.641752 75.034927 50.8383395 1.706191357 -0.06797 88 50 SH4953 4953 snR9 snR9 171 187 30.832983 95.088399 62.960691 1.799069486 -0.120556 88 51 SH3377 3377 Thr4 5' flank 27.921628 72.616683 50.2691555 1.701301589 0.053828 88 52 SH10268 10268 RUF7 5' 98.925764 150.652862 124.789313 2.096177394 0.112156 88 53 SH21369 21369 Leu1_5 spliced 38.825544 91.686086 65.255815 1.814619218 0.153543 88 54 SH1616 1616 Leu5 5' flank 28.370314 91.768494 60.069404 1.778653323 -0.176992 88 55 SH17157 17157 YHR012W_8_129473_130440_INTRON_49_167 3' exon 29.21192 113.330632 29.21192 85.118712 57.165316 1.757132609 -0.021498 88 56 SH106 106 Arg1 5' flank 27.431306 68.500151 47.9657285 1.680931045 0.075709 88 57 SH7122 7122 snR63 snR63 116 135 27.748848 78.70832 53.228584 1.726144913 -0.037544 88 58 SH12705 12705 MT ORF 8 (hypothetical) ORF8 27.829738 99.479284 27.829738 72.649546 50.239642 1.701046536 0.047046 88 59 SH10607 10607 RUF8 3' 27.646273 73.16079 50.4035315 1.702460966 0.027579 88 60 SH9814 9814 RUF4 3' 27.364887 82.433467 54.899177 1.739565834 -0.110097 88 61 SH8191 8191 snoRNA cluster 3; intergenic 27.07552 105.490045 27.07552 79.414525 53.2450225 1.726279015 -0.092771 88 62 SH16627 16627 YFL039C_6_54695_53260_INTRON_11_318 intron 26.687211 94.654297 26.687211 68.967086 47.8271485 1.679674489 0.01623 88 63 SH6466 6466 snR45 3' 28.5075 78.906322 53.706911 1.730030174 0.010762 88 64 SH4839 4839 snR8 5' 26.067997 71.197417 48.632707 1.686928444 -0.059522 88 65 SH13005 13005 MT COX1 COX1ai2 26.004003 105.960653 26.004003 80.95665 53.4803265 1.72819405 -0.188109 88 66 SH16433 16433 YER074W_5_306319_307192_INTRON_4_469 intron 32.75673 125.2491 32.75673 93.49237 63.12455 1.800198295 -0.03101 88 67 SH10258 10258 RUF7 5' 30.907928 87.532407 59.2201675 1.772469631 0.01078 88 68 SH2696 2696 Pro4 3' flank 29.225156 84.881557 57.0533565 1.756281199 -0.016576 88 69 SH16417 16417 YER056C-A_5_270183_269421_INTRON_38_434 intron 27.078327 98.554464 27.078327 72.476137 49.777232 1.697030743 -0.003374 88 70 SH4745 4745 snR4 3' 26.64326 86.266431 56.4548455 1.751701223 -0.205954 88 71 SH21813 21813 copy of SH15493 46.636553 108.245812 77.4411825 1.888971976 -0.031436 88 72 SH2327 2327 Phe3 5' flank 30.622476 79.910637 55.2665565 1.742462406 0.132944 88 73 SH6956 6956 snR58 3' 28.705434 74.10576 51.405597 1.711010407 0.086643 88 74 SH4224 4224 telomerase RNA telomerase 156 172 33.810771 90.70409 62.2574305 1.794191192 0.057543 88 75 SH16462 16462 YER093C-A_5_348396_347908_INTRON_125_199 exon/intron 27.186453 106.626556 27.186453 80.440103 53.813278 1.730889448 -0.097914 88 76 SH12200 12200 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7886 7904 26.894144 71.383668 49.138906 1.691425483 -0.001943 88 77 SH21357 21357 YPR187W spliced 30.037085 93.64043 61.8387575 1.791260755 -0.13182 88 78 SH7937 7937 snoRNA cluster1 3' 26.976562 95.66686 26.976562 69.690298 48.33343 1.684247616 0.026987 88 79 SH21481 21481 copy of SH1654 27.499698 67.425444 47.462571 1.67635126 0.095679 88 80 SH802 802 Glu1 tRNA 26 40 32.389371 88.005282 60.1973265 1.779577204 0.065107 88 81 SH9804 9804 RUF4 3' 29.911815 98.533442 64.2226285 1.807688076 -0.216207 88 82 SH6804 6804 snR52 5' 29.494282 83.96678 56.730531 1.753816849 0.012455 88 83 SH21138 21138 YNL162W spliced 28.744777 87.438976 58.0918765 1.764115405 -0.084679 88 84 SH2338 2338 Phe3 tRNA 16 28 46.15193 104.519626 75.335778 1.877001278 0.03034 88 85 SH10552 10552 RUF8 RUF8 686 703 25.379273 67.360962 46.3701175 1.666238196 -0.056928 88 86 SH7909 7909 snoRNA cluster1 intergenic 25.059285 94.425836 25.059285 70.366551 47.712918 1.678635978 -0.124258 88 87 SH19669 19669 SIR1 2.4 29.32875 94.511036 61.919893 1.791830197 -0.178077 88 88 SH1054 1054 Gly3 tRNA 6 23 34.583957 91.049299 62.816628 1.79807462 0.069155 88 89 SH15131 15131 MT tRNA Phe tRNA 29.122128 105.055753 29.122128 76.933625 53.0278765 1.724504236 0.076302 88 90 SH3704 3704 Val3 tRNA 1 17 745.374541 1270.799516 1008.087029 3.003498027 -0.831769 88 91 SH20878 20878 YLR185W spliced 27.320846 79.52572 53.423283 1.727730573 -0.077177 88 92 SH11837 11837 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6071 6088 36.039681 172.128913 104.084297 2.017385213 -1.183549 88 93 SH13994 13994 MT COB intronic 26.743992 115.677772 26.743992 89.93378 58.338886 1.765958132 -0.240528 88 94 SH1227 1227 Ile1 3' flank 27.050655 56.020435 41.535545 1.618419913 0.249625 88 95 SH13698 13698 MT tRNAGlu (and 5' processing site for COB) 5' 27.103051 115.362518 27.103051 89.259467 58.181259 1.764783115 -0.207864 88 96 SH19729 19729 Negative Control 31.231766 89.078278 60.155022 1.77927189 -0.002352 88 97 SH21142 21142 YNL162W spliced 28.457667 82.825584 55.6416255 1.745399809 -0.041069 88 98 SH9550 9550 RUF3 RUF3 136 153 28.429831 75.425012 51.9274215 1.715396758 0.050798 88 99 SH21613 21613 copy of SH7094 28.836807 102.049595 65.443201 1.815864534 -0.319436 88 100 SH6605 6605 snR47 3' 26.777756 70.576067 48.6769115 1.687323015 0.000623 88 101 SH11800 11800 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5886 5904 5286.91034 4679.038678 4982.974509 3.697488665 -0.322699 88 102 SH14287 14287 MT VAR1 includes 5’ processing site VAR1 28.624638 100.264177 28.624638 72.639539 50.6320885 1.704425842 0.10134 88 103 SH4364 4364 telomerase RNA telomerase 856 871 55.124753 118.036705 86.580729 1.937421238 -0.049751 88 104 SH12940 12940 MT COX1 COX1ai2 27.970042 91.994149 27.970042 65.024107 46.4970745 1.667425629 0.163137 89 2 SH19726 19726 Negative Control 33.657181 84.072728 58.8649545 1.769856813 0.187216 89 3 SH18205 18205 YML024W_13_225889_226697_INTRON_4_401 intron 26.785194 103.065456 26.785194 77.280262 52.032728 1.716276596 -0.085922 89 4 SH9226 9226 snR6 / U6 RNA U6 1 15 28.850551 85.991337 57.420944 1.759070328 -0.053937 89 5 SH36 36 Ala1 3' flank 26.794377 70.080481 48.437429 1.685181083 0.00858 89 6 SH21461 21461 copy of SH731 40.211068 98.488023 69.3495455 1.841043619 0.034781 89 7 SH8415 8415 snoRNA cluster 5 snR190 29.77803 100.748433 29.77803 71.970403 50.8742165 1.706497734 0.185037 89 8 SH9427 9427 RUF2 5' 28.934451 89.949439 59.441945 1.774093012 -0.119666 89 9 SH19560 19560 CBP1 2.2 27.429648 71.277954 49.353801 1.693320606 0.037448 89 10 SH4580 4580 U3b (snR17b) 456-462 + 3' 456 31.749211 93.633099 62.691155 1.797206271 -0.060767 89 11 SH21791 21791 copy of SH14651 35.242062 96.751807 65.9969345 1.819523763 -0.038092 89 12 SH10506 10506 RUF8 RUF8 456 475 27.499284 82.251501 54.8753925 1.73937764 -0.098653 89 13 SH1596 1596 Leu4 3' flank 26.78213 86.43009 56.60611 1.752863311 -0.198057 89 14 SH16002 16002 YDL137W_4_216158_217074_INTRON_1_332 intron 50.173916 143.75493 50.173916 94.581014 72.377465 1.859603368 0.30462 89 15 SH6034 6034 snR37 snR37 86 102 30.94468 81.825241 56.3849605 1.751163281 0.116672 89 16 SH278 278 Arg4 5' flank - tRNA2 5' flank 2 27.468673 114.773212 71.1209425 1.851997503 -0.59794 89 17 SH3959 3959 RNase MRP RNaseMRP 211 227 30.786523 107.567215 69.176869 1.839960902 -0.368802 89 18 SH21607 21607 copy of SH6883 27.062039 77.196543 52.129291 1.717081818 -0.065349 89 19 SH4260 4260 telomerase RNA telomerase 336 354 29.709784 93.682609 61.6961965 1.790258391 -0.147181 89 20 SH14529 14529 MT 21S rRNA 21S rRNA3 27.325152 103.746416 27.325152 77.421264 52.373208 1.719109176 -0.050028 89 21 SH14341 14341 MT VAR1 includes 5’ processing site VAR1 25.043621 102.783969 25.043621 78.740348 51.8919845 1.71510028 -0.233355 89 22 SH15819 15819 YDL064W_4_337486_338069_INTRON_39_148 5' exon 27.263815 111.209226 27.263815 84.945411 56.104613 1.748998571 -0.147122 89 23 SH16729 16729 YGL076C_7_365994_364333_INTRON_565_1032 5' exon 31.615664 117.236323 31.615664 86.620659 59.1181615 1.77172092 0.057279 89 24 SH20107 20107 YDL064W spliced 33.993276 88.452893 61.2230845 1.786915206 0.113179 89 25 SH11657 11657 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5171 5186 172.563113 180.463045 176.513079 2.246776891 0.458239 89 26 SH16283 16283 YDR447C_4_1355542_1354818_INTRON_4_317 intron 27.856771 103.918702 27.856771 77.061931 52.459351 1.719822913 -0.009065 89 27 SH14761 14761 MT ORF11; tRNA Leu; tRNA Gln ORF11 27.932062 99.966834 27.932062 73.034772 50.483417 1.703148743 0.049039 89 28 SH20206 20206 YDR059C spliced 70.303535 128.059372 99.1814535 1.996430469 0.036585 89 29 SH6775 6775 snR50 snR50 51 70 30.503786 97.258239 63.8810125 1.805371791 -0.172107 89 30 SH1396 1396 Leu1 tRNA-intron 51 63 28.527825 85.297377 56.912601 1.755208434 -0.065872 89 31 SH520 520 Cys1 5' flank 31.334033 101.416161 66.375097 1.822005169 -0.234163 89 32 SH7938 7938 snoRNA cluster1 3' 28.864899 104.161187 28.864899 76.296288 52.5805935 1.720825484 0.067915 89 33 SH4283 4283 telomerase RNA telomerase 451 465 30.864271 89.863106 60.3636885 1.780775769 -0.031764 89 34 SH10389 10389 RUF7 3' 32.71419 91.390054 62.052122 1.792756638 0.014063 89 35 SH5393 5393 snR31 snR31 31 46 31.154038 82.13676 56.645399 1.75316464 0.119819 89 36 SH1544 1544 Leu3 3' flank 29.747519 69.758222 49.7528705 1.696818142 0.214353 89 37 SH3714 3714 Val3 tRNA 51 65 31.682843 88.63493 60.1588865 1.779299789 0.024559 89 38 SH12768 12768 MT COX1 COX1ai1 26.604236 94.717668 26.604236 69.113432 47.858834 1.679962114 0.008199 89 39 SH9705 9705 RUF4 RUF4 301 313 35.408583 96.083133 65.745858 1.817868397 -0.019979 89 40 SH7275 7275 snR65 3' 28.906272 83.891792 56.399032 1.75127165 -0.024405 89 41 SH19532 19532 CBP1 1.2 28.141612 87.946901 58.0442565 1.763759253 -0.122181 89 42 SH3995 3995 RNase MRP 3' 26.961038 70.129651 48.5453445 1.686147587 0.019848 89 43 SH6000 6000 snR37 5' 31.267543 84.396457 57.832 1.762168212 0.082702 89 44 SH11153 11153 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2651 2668 320.514115 316.716689 318.615402 2.503266766 0.297345 89 45 SH5903 5903 snR36 5' 25.951605 80.828283 53.389944 1.727459465 -0.190321 89 46 SH7243 7243 snR65 5' - 12 -9 12 25.698603 80.201712 52.9501575 1.723867256 -0.201281 89 47 SH1769 1769 Leu7 3' flank 72.976959 130.126933 101.551946 2.00668825 0.045797 89 48 SH12953 12953 MT COX1 COX1ai2 26.609085 100.924324 26.609085 75.315239 50.962162 1.707247844 -0.073911 89 49 SH16813 16813 YGL178W_7_167356_170575_INTRON_4_643 exon/intron 29.128553 100.153681 29.128553 72.025128 50.5768405 1.703951696 0.142726 89 50 SH7846 7846 snoRNA cluster1 snR74 33.361149 123.842268 33.361149 91.481119 62.421134 1.795331654 0.028778 89 51 SH18923 18923 YOL121C_15_92849_92025_INTRON_21_410 intron 50.678272 162.556864 50.678272 112.878592 81.778432 1.912638779 -0.040698 89 52 SH8923 8923 snR17a / U3a 5' 32.449375 95.785162 64.1172685 1.806975012 -0.088267 89 53 SH21792 21792 copy of SH14652 28.246889 77.386513 52.816701 1.722771271 0.01293 89 54 SH11043 11043 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2101 2118 9517.002612 5268.859142 7392.930877 3.868816646 0.254735 89 55 SH3883 3883 RNaseP 3' 29.577799 73.701387 51.639593 1.712982811 0.148529 89 56 SH326 326 Arg5 5' flank 27.661289 75.722719 51.692004 1.713423369 -0.004782 89 57 SH9032 9032 snR17a / U3a U3a 446 458 101.510766 137.642187 119.5764765 2.077645752 0.300291 89 58 SH7058 7058 snR62 snR62 81 98 30.080571 81.132985 55.606778 1.745127732 0.084103 89 59 SH488 488 Asp2 tRNA 1 18 458.799954 534.765495 496.7827245 2.696166485 -0.089089 89 60 SH18814 18814 YNL302C_14_62942_61957_INTRON_21_571 intron 33.656169 132.684131 33.656169 100.027962 66.8420655 1.825049862 -0.145069 89 61 SH17275 17275 YHR141C_8_382752_381991_INTRON_5_445 5' exon 38.001544 134.959536 38.001544 97.957992 67.979768 1.832379678 -0.000587 89 62 SH11930 11930 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6536 6551 35.712819 90.372115 63.042467 1.7996332 0.111768 89 63 SH12254 12254 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.676869 108.140936 26.676869 82.464067 54.570468 1.736957678 -0.158446 89 64 SH7244 7244 snR65 5' - 18 -4 18 26.594422 66.476986 46.535704 1.667786288 0.044809 89 65 SH21501 21501 copy of SH2551 37.733958 104.624047 71.1790025 1.852351898 -0.142193 89 66 SH8855 8855 LSR1 / U2 RNA U2 916 931 483.639008 599.292638 541.465823 2.733571049 -0.204241 89 67 SH8692 8692 LSR1 / U2 RNA U2 101 119 34.572701 92.600862 63.5867815 1.803366843 0.034564 89 68 SH11852 11852 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6146 6162 31.911277 84.023239 57.967258 1.763182758 0.116833 89 69 SH15401 15401 YBL050W_2_125087_126081_INTRON_31_146 intron 27.752535 106.981236 27.752535 80.228701 53.990618 1.732318299 -0.05645 89 70 SH7699 7699 snoRNA cluster1 intergenic 27.722541 95.737621 27.722541 69.01508 48.3688105 1.684565407 0.088861 89 71 SH21776 21776 copy of SH14040 29.845225 84.669855 57.25754 1.757832685 0.015387 89 72 SH20123 20123 YDL079C spliced 27.423308 88.991361 58.2073345 1.764977712 -0.182719 89 73 SH20320 20320 YER044C-A spliced 27.32123 72.329633 49.8254315 1.697451068 0.015766 89 74 SH3458 3458 Trp1 3' flank 31.90483 87.479446 59.692138 1.775917134 0.054204 89 75 SH6480 6480 snR45 3' 27.27829 70.267215 48.7727525 1.688177266 0.040497 89 76 SH2564 2564 Pro2 tRNA-intron/exon 56 71 66.197737 201.131339 133.664538 2.126016202 -0.847324 89 77 SH8582 8582 snR19 / U1 RNA U1 406 418 76.989593 128.997976 102.9937845 2.012811017 0.117506 89 78 SH5244 5244 snR30 snR30 71 87 31.690034 75.942408 53.816221 1.730913198 0.248506 89 79 SH4365 4365 telomerase RNA telomerase 861 879 32.41507 102.940681 67.6778755 1.830446717 -0.23547 89 80 SH14943 14943 MT tRNA Met 5' 26.841872 105.656842 26.841872 79.81497 53.328421 1.726958725 -0.114137 89 81 SH9437 9437 RUF2 RUF2 26 44 27.819956 76.087376 51.953666 1.715616198 0.001185 89 82 SH19241 19241 YPL090C_16_378390_377286_INTRON_7_400 intron 27.193013 98.31243 27.193013 72.119417 49.656215 1.695973613 0.0095 89 83 SH2114 2114 Met1 5' flank 30.838596 88.33056 59.584578 1.775133868 -0.006268 89 84 SH8575 8575 snR19 / U1 RNA U1 371 387 29.819936 85.2514 57.535668 1.75993716 0.003664 89 85 SH19231 19231 YPL090C_16_378390_377286_INTRON_7_400 intron 48.424824 151.486608 48.424824 104.061784 76.243304 1.882201708 0.080705 89 86 SH16026 16026 YDL189W_4_122079_123590_INTRON_1_99 3' exon 36.925879 125.655247 36.925879 89.729368 63.3276235 1.801593191 0.154813 89 87 SH14217 14217 MT ATP9 ATP9 39.448581 138.184936 39.448581 99.736355 69.592468 1.842562238 -0.006949 89 88 SH16917 16917 YGL251C_7_31636_27921_INTRON_59_210 intron 27.851455 112.20195 27.851455 85.350495 56.600975 1.752823912 -0.111706 89 89 SH6493 6493 snR46 5' 29.39134 75.065256 52.228298 1.717905873 0.118255 89 90 SH4067 4067 SRP RNA SRP RNA 226 245 27.89115 80.86757 54.37936 1.735434092 -0.055003 89 91 SH15432 15432 YBL072C_2_89435_88518_INTRON_1_308 intron 30.089822 110.019738 30.089822 80.929916 55.509869 1.744370202 0.087192 89 92 SH5613 5613 snR34 5' - 3 -14 3 27.154448 70.581171 48.8678095 1.689022872 0.027456 89 93 SH17441 17441 YIL133C_9_99416_98527_INTRON_32_321 intron 33.705956 176.776325 33.705956 144.070369 88.8881625 1.948843929 -0.889949 89 94 SH13320 13320 MT COX1 COX1-ai5a 29.177134 150.213501 29.177134 122.036367 75.6067505 1.878560573 -0.67132 89 95 SH1631 1631 Leu5 tRNA 21 35 29.347648 91.341964 60.344806 1.780639895 -0.124454 89 96 SH5619 5619 snR34 snR34 16 32 29.253444 75.702215 52.4778295 1.719975864 0.100935 89 97 SH14859 14859 MT tRNA Ser2; tRNA Arg2 tRNA Ser 27.854983 100.574293 27.854983 73.71931 50.7871465 1.705753812 0.034765 89 98 SH19991 19991 YBL092W spliced 33.571685 78.458984 56.0153345 1.748306934 0.290717 89 99 SH7274 7274 snR65 3' 29.380048 83.280697 56.3303725 1.750742623 0.013546 89 100 SH3120 3120 Ser4 tRNA 6 18 2873.036764 3632.783661 3252.910213 3.512272076 -0.715673 89 101 SH17701 17701 YKL081W_11_282533_284097_INTRON_206_531 5' exon 29.633174 102.096471 29.633174 73.463297 51.5482355 1.712213804 0.155293 89 102 SH11926 11926 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6516 6529 54.634796 109.829444 82.23212 1.915041487 0.081336 89 103 SH14974 14974 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.04784 102.331914 29.04784 74.284074 51.665957 1.713204478 0.106579 89 104 SH2888 2888 Pro8 5' flank 28.699325 80.157109 54.428217 1.735824108 0.007651 90 2 SH1254 1254 Ile2 5' flank 27.563413 73.059815 50.311614 1.70166825 0.023124 90 3 SH595 595 Gln1 tRNA 16 32 28.417243 79.523285 53.970264 1.732154542 -0.003011 90 4 SH19249 19249 YPL129W_16_305297_306136_INTRON_10_114 intron 30.936579 119.177546 30.936579 89.240967 60.088773 1.778793336 -0.017885 90 5 SH13563 13563 MT COX1 Exon 6 25.8058 95.276646 25.8058 70.470846 48.138323 1.682490957 -0.069147 90 6 SH21456 21456 copy of SH552 40.295938 89.547954 64.921946 1.812391529 0.232797 90 7 SH3443 3443 Trp1 tRNA 46 62 33.879039 98.633345 66.256192 1.821226472 -0.110917 90 8 SH4571 4571 U3b (snR17b) U3b 411 427 57.179203 100.668 78.9236015 1.897206895 0.29518 90 9 SH12553 12553 MT_15S 5' 24.74972 87.506337 24.74972 63.756617 44.2531685 1.645944371 -0.047994 90 10 SH19966 19966 YBL059W spliced 29.384376 70.861672 50.123024 1.700037265 0.175507 90 11 SH1011 1011 Gly2 tRNA 46 58 31.191887 91.962651 61.577269 1.789420424 -0.053359 90 12 SH11176 11176 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2766 2782 259.015812 240.345187 249.6804995 2.397384624 0.4788 90 13 SH283 283 Arg4 11-25 11 25 25.335855 79.651126 52.4934905 1.720105452 -0.222048 90 14 SH8079 8079 snoRNA cluster 2 snR61/3' 26.875601 92.297788 26.875601 66.422187 46.648894 1.668841352 0.065855 90 15 SH6458 6458 snR45 snR45 136 150 83.713255 136.303928 110.0085915 2.041426604 0.106741 90 16 SH901 901 Glu3 tRNA 16 30 525.68013 369.125569 447.4028495 2.650698746 0.680604 90 17 SH18897 18897 YOL120C_15_94401_93394_INTRON_113_559 intron 28.732745 93.873871 28.732745 66.141126 47.4369355 1.676116625 0.198604 90 18 SH10840 10840 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1086 1106 201.456361 233.37601 217.4161855 2.337291872 0.216711 90 19 SH9534 9534 RUF3 RUF3 56 77 25.492419 69.01991 47.2561645 1.67445847 -0.072714 90 20 SH17372 17372 YIL052C_9_257061_256224_INTRON_38_509 intron 30.64655 115.0278 30.64655 85.38125 58.0139 1.763532062 0.037906 90 21 SH8643 8643 snR19 / U1 RNA 3' 28.44861 80.706017 54.5773135 1.737012154 -0.015714 90 22 SH15567 15567 YBR084C-A_2_415219_414144_INTRON_3_508 intron 28.30821 100.920262 28.30821 73.612052 50.960131 1.707230536 0.067081 90 23 SH9269 9269 RUF1 5' 32.718777 93.151544 62.9351605 1.798893344 -0.024585 90 24 SH1688 1688 Leu6 tRNA 6 18 436.398006 781.308273 608.8531395 2.78451255 -0.76055 90 25 SH3409 3409 Thr4 3' flank 30.191998 71.339566 50.765782 1.70557108 0.219864 90 26 SH6904 6904 snR56 3' 27.678125 81.047847 54.362986 1.735303303 -0.071679 90 27 SH4936 4936 snR9 snR9 86 105 34.598762 102.424103 68.5114325 1.835763048 -0.169728 90 28 SH1299 1299 Ile2 3' flank 27.702201 70.620752 49.1614765 1.691624918 0.065378 90 29 SH2148 2148 Met1 3' flank 28.236669 73.334706 50.7856875 1.705741336 0.065994 90 30 SH20684 20684 YIL111W spliced 28.770098 83.971599 56.3708485 1.751054572 -0.034254 90 31 SH9809 9809 RUF4 3' 28.996321 82.778388 55.8873545 1.747313552 -0.005168 90 32 SH2104 2104 Met1 5' flank 28.786781 69.91336 49.3500705 1.693287777 0.148998 90 33 SH12593 12593 MT_15S MT_15S 28.302899 95.389943 28.302899 68.087044 48.1949715 1.683001728 0.141752 90 34 SH16642 16642 YFR024C-A_6_203420_201947_INTRON_48_165 3' exon 27.811792 112.45797 27.811792 85.646178 56.728985 1.753805013 -0.117853 90 35 SH21472 21472 copy of SH1242 32.204016 88.800418 60.502217 1.781771289 0.043511 90 36 SH15804 15804 YDL061C_4_341182_340627_INTRON_1_408 intron 32.008141 122.475065 32.008141 91.466924 61.7375325 1.790549268 -0.010424 90 37 SH10859 10859 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1181 1199 29.473183 72.21167 50.8424265 1.706226269 0.162298 90 38 SH6815 6815 snR52 5' 31.492878 95.451682 63.47228 1.802584099 -0.106758 90 39 SH16001 16001 YDL137W_4_216158_217074_INTRON_1_332 intron 29.120929 112.179838 29.120929 84.058909 56.589919 1.752739072 -0.012458 90 40 SH2468 2468 Phe5 3' flank 30.574631 93.543273 62.058952 1.792804437 -0.106474 90 41 SH13149 13149 MT COX1 intronic 27.231205 101.928502 27.231205 75.697297 51.464251 1.711505657 -0.034259 90 42 SH21815 21815 copy of SH15700 29.146383 88.614649 58.880516 1.769971607 -0.08677 90 43 SH19949 19949 YBL050W spliced 37.933655 103.445513 70.689584 1.849355426 -0.114484 90 44 SH17007 17007 YGR148C_7_788173_787307_INTRON_1_392 intron 28.759542 117.89154 28.759542 90.131998 59.44577 1.774120957 -0.130918 90 45 SH14029 14029 MT COB Exon4 26.38699 92.130823 26.38699 66.743833 46.5654115 1.668063445 0.025885 90 46 SH8917 8917 LSR1 / U2 RNA 3' 44.021774 101.887684 72.954729 1.863053449 0.041568 90 47 SH17245 17245 YHR097C_8_298611_297387_INTRON_126_249 5' exon 39.209461 141.474892 39.209461 103.265431 71.237446 1.852708341 -0.083674 90 48 SH7378 7378 snR68 snR68 111 130 26.279587 82.219666 54.2496265 1.734396752 -0.183746 90 49 SH14353 14353 MT ORF9 and ORF10 (hypothetical) 5' 26.715992 93.229979 26.715992 67.513987 47.1149895 1.673159099 0.038739 90 50 SH18660 18660 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.909517 103.456655 28.909517 75.547138 52.2283275 1.717906119 0.080704 90 51 SH21631 21631 copy of SH7931 33.14338 88.458999 60.8011895 1.783912076 0.087952 90 52 SH8212 8212 snoRNA cluster 3; snR51 28.58582 101.079567 28.58582 73.493747 51.0397835 1.707908824 0.087078 90 53 SH2816 2816 Pro6 3' flank 26.739244 81.291846 54.015545 1.732518762 -0.139712 90 54 SH2235 2235 Phe1 tRNA-intron/exon 51 67 86.648126 175.753176 131.200651 2.11793599 -0.307962 90 55 SH21135 21135 YNL147W spliced 34.509626 105.129963 69.8197945 1.843978566 -0.225634 90 56 SH18366 18366 YMR079W_13_424988_426058_INTRON_10_165 intron 29.784078 103.153661 29.784078 74.369583 52.0768305 1.716644544 0.152588 90 57 SH12234 12234 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.4019 119.242492 27.4019 92.840592 60.121246 1.779027973 -0.241444 90 58 SH3817 3817 RNaseP RNaseP 51 63 29.427501 81.265298 55.3463995 1.743089374 0.041114 90 59 SH8483 8483 snR19 / U1 RNA 5' 33.394935 90.773427 62.084181 1.792980956 0.045414 90 60 SH1087 1087 Gly4 5' flank 27.139534 94.589503 60.8645185 1.784364191 -0.283191 90 61 SH8812 8812 LSR1 / U2 RNA U2 701 713 1398.522217 1694.323145 1546.422681 3.189328211 -0.453132 90 62 SH15304 15304 YAL001C_1_151163_147591_INTRON_71_160 intron 28.683733 102.553338 28.683733 74.869605 51.776669 1.714134107 0.074951 90 63 SH6679 6679 snR49 5' 29.04849 72.749333 50.8989115 1.706708495 0.127523 90 64 SH21884 21884 copy of SH18599 29.084898 93.984579 61.5347385 1.789120359 -0.180611 90 65 SH21875 21875 copy of SH18250 29.012572 68.932578 48.972575 1.68995294 0.177601 90 66 SH945 945 Gly1 5' flank 29.087821 86.740402 57.9141115 1.762784398 -0.056392 90 67 SH7462 7462 snR71 5' 34.106962 84.591885 59.3494235 1.773416505 0.19546 90 68 SH7350 7350 snR68 5' 27.656514 71.25693 49.456722 1.694225328 0.053594 90 69 SH4771 4771 snR5 snR5 26 43 30.508151 88.817702 59.6629265 1.775704552 -0.029195 90 70 SH13592 13592 MT ATP8/AAP1 5' 28.34636 98.072562 28.34636 70.726202 49.536281 1.694923398 0.108214 90 71 SH13378 13378 MT COX1 intronic 26.042862 107.765502 26.042862 82.72264 54.382751 1.735461173 -0.206901 90 72 SH3081 3081 Ser3 101 + 3' flank 101 25.96372 73.54394 49.75383 1.696826518 -0.098357 90 73 SH1237 1237 Ile1 3' flank 30.291015 89.993907 60.142461 1.779181195 -0.059107 90 74 SH281 281 Arg4 1-13 1 13 34.437356 88.660423 61.5488895 1.789220222 0.119514 90 75 SH2761 2761 Pro5 3' flank 29.364338 80.047782 54.70606 1.738035437 0.052179 90 76 SH2811 2811 Pro6 3' flank 26.639283 72.516688 49.5779855 1.695288876 -0.035391 90 77 SH21449 21449 copy of SH210 30.796298 89.103491 59.9498945 1.777788423 -0.021583 90 78 SH6144 6144 snR39B snR39B 61 79 28.886456 89.103796 58.995126 1.770816133 -0.107276 90 79 SH8402 8402 snoRNA cluster 5 snR190 27.398859 103.891168 27.398859 77.492309 52.445584 1.719708926 -0.045871 90 80 SH7775 7775 snoRNA cluster1 intergenic 27.753754 94.815286 27.753754 68.061532 47.907643 1.680404805 0.104379 90 81 SH9307 9307 RUF1 RUF1 111 129 29.737822 94.133306 61.935564 1.791940097 -0.153343 90 82 SH4772 4772 snR5 snR5 31 47 56.251425 137.418574 96.8349995 1.986032355 -0.321223 90 83 SH7697 7697 snoRNA cluster1 intergenic 28.469787 99.243767 28.469787 71.77398 50.1218835 1.700027383 0.10247 90 84 SH20982 20982 YML056C spliced 27.676729 90.277036 58.9768825 1.770681812 -0.184771 90 85 SH14570 14570 MT 21S rRNA 21S rRNA3 30.933316 124.084207 30.933316 94.150891 62.5421035 1.796172484 -0.10088 90 86 SH8874 8874 LSR1 / U2 RNA U2 1011 1028 28.210143 70.683422 49.4467825 1.694138037 0.099518 90 87 SH5729 5729 snR34 3' 39.589914 93.964325 66.7771195 1.824627681 0.118957 90 88 SH8339 8339 snoRNA cluster4 snR53 28.163873 100.651034 28.163873 73.487161 50.825517 1.706081805 0.05903 90 89 SH8722 8722 LSR1 / U2 RNA U2 251 268 27.331156 79.256587 53.2938715 1.72667727 -0.073072 90 90 SH14155 14155 MT COB intronic 27.89657 107.200785 27.89657 80.304215 54.1003925 1.733200416 -0.047638 90 91 SH611 611 Gln1 3' flank 25.310996 73.275821 49.2934085 1.692788849 -0.143885 90 92 SH13200 13200 MT COX1 Exon4 31.692466 165.260538 31.692466 134.568072 83.130269 1.919759186 -0.804347 90 93 SH20566 20566 YHR010W spliced 29.997053 105.508859 67.752956 1.830928248 -0.351772 90 94 SH7294 7294 snR66 5' 30.956773 128.427309 79.692041 1.90141495 -0.727892 90 95 SH17511 17511 YJL136C_10_156971_156248_INTRON_25_484 intron 51.907183 175.988262 51.907183 125.081079 88.494131 1.946914469 -0.219071 90 96 SH8930 8930 snR17a / U3a 5' 29.19506 92.830703 61.0128815 1.785421536 -0.156441 90 97 SH14773 14773 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu 33.638324 124.385916 33.638324 91.747592 62.692958 1.797218761 0.029944 90 98 SH6072 6072 snR37 snR37 276 292 28.979431 81.056902 55.0181665 1.740506113 0.014776 90 99 SH105 105 Arg1 5' flank 27.017492 74.264979 50.6412355 1.704504293 -0.031102 90 100 SH2435 2435 Phe5 5' flank 29.695388 93.759818 61.727603 1.790479413 -0.149104 90 101 SH9822 9822 RUF5-1 5' 29.608649 81.447002 55.5278255 1.744510667 0.050441 90 102 SH11870 11870 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6236 6253 113.386178 165.608702 139.49744 2.144566238 0.104915 90 103 SH18715 18715 YNL130C_14_381156_379555_INTRON_30_470 intron 26.757342 101.021216 26.757342 75.263874 51.010608 1.7076605 -0.062556 90 104 SH21632 21632 copy of SH7932 36.281454 92.761084 64.521269 1.8097029 0.072287 91 2 SH4225 4225 telomerase RNA telomerase 161 177 33.107741 90.059861 61.583801 1.78946649 0.054057 91 3 SH9756 9756 RUF4 RUF4 556 571 36.785234 91.738589 64.2619115 1.80795364 0.106582 91 4 SH13837 13837 MT COB Cytbi2 26.357217 104.177737 26.357217 78.82052 52.5888685 1.720893827 -0.135916 91 5 SH9504 9504 RUF3 5' 30.740825 94.600446 62.6706355 1.797064099 -0.116603 91 6 SH10739 10739 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 581 598 30.003298 87.966032 58.984665 1.770739117 -0.036623 91 7 SH15400 15400 YBL050W_2_125087_126081_INTRON_31_146 intron 29.71353 116.980373 29.71353 88.266843 58.9901865 1.770779769 -0.054893 91 8 SH20504 20504 YGR027C spliced 27.94255 65.812227 46.8773885 1.67096341 0.149683 91 9 SH19352 19352 YPL249C-A_16_76239_75699_INTRON_17_254 intron 30.87429 111.162173 30.87429 81.287883 56.0810865 1.748816419 0.123817 91 10 SH7067 7067 snR62 3' 26.740156 70.517118 48.628637 1.686892097 -0.001281 91 11 SH15583 15583 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.14328 110.349961 29.14328 82.206681 55.6749805 1.745660074 0.011296 91 12 SH12484 12484 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 28.873298 96.328744 28.873298 68.455446 48.664372 1.687211123 0.174999 91 13 SH30 30 Ala1 tRNA 46 58 30.3498 75.912503 53.1311515 1.725349228 0.167481 91 14 SH6526 6526 snR46 snR46 121 137 40.519973 87.688603 64.104288 1.806887081 0.280638 91 15 SH518 518 Asp2 3' flank 29.139593 77.731337 53.435465 1.727829593 0.067104 91 16 SH1943 1943 Lys2 5' flank 25.070961 60.873602 42.9722815 1.633188412 0.023135 91 17 SH9782 9782 RUF4 RUF4 686 706 27.707101 68.67489 48.1909955 1.682965898 0.09253 91 18 SH10955 10955 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1661 1676 2312.335769 1524.060272 1918.198021 3.282893438 0.373918 91 19 SH3408 3408 Thr4 3' flank 27.062491 71.020345 49.041418 1.690563019 0.014971 91 20 SH2927 2927 Pro8 3' flank 30.34173 82.657888 56.499809 1.75204698 0.074674 91 21 SH2767 2767 Pro6 5' flank 28.518746 78.816884 53.667815 1.729713914 0.01264 91 22 SH19177 19177 YPL079W_16_406631_407534_INTRON_12_432 intron 28.598895 110.649903 28.598895 83.051008 55.8249515 1.746828354 -0.034463 91 23 SH1375 1375 Leu1 5' flank 28.428873 86.106577 57.267725 1.757909931 -0.081873 91 24 SH11398 11398 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3876 3893 167.606006 171.786435 169.6962205 2.22967217 0.506218 91 25 SH5897 5897 snR36 5' 28.010351 81.11067 54.5605105 1.736878425 -0.049973 91 26 SH13806 13806 MT COB intronic/exon2 29.758671 123.027456 29.758671 94.268785 62.013728 1.79248784 -0.15463 91 27 SH7640 7640 snR189 3' 41.082607 103.717274 72.3999405 1.859738209 -0.053755 91 28 SH6068 6068 snR37 snR37 256 275 27.39438 79.196477 53.2954285 1.726689958 -0.067959 91 29 SH7837 7837 snoRNA cluster1 snR74 32.916694 124.871777 32.916694 92.955083 62.9358885 1.798898368 -0.015143 91 30 SH13510 13510 MT COX1 intronic 31.101241 117.385181 31.101241 87.28394 59.1925905 1.772267347 0.023522 91 31 SH13429 13429 MT COX1 intronic 26.231365 98.451035 26.231365 73.21967 49.7255175 1.696579312 -0.074366 91 32 SH8662 8662 LSR1 / U2 RNA 5' 28.113578 69.367388 48.740483 1.687889829 0.110949 91 33 SH216 216 Arg3 5' flank 28.701417 86.936402 57.8189095 1.762069896 -0.077783 91 34 SH4138 4138 SRP RNA SRP RNA 581 597 69.681769 111.18372 90.4327445 1.956325711 0.292284 91 35 SH7372 7372 snR68 snR68 81 103 27.096377 69.95228 48.5243285 1.685959534 0.031921 91 36 SH14994 14994 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.161906 95.163734 27.161906 69.001828 48.081867 1.681981323 0.0497 91 37 SH13093 13093 MT COX1 COX1ai3 27.208049 106.275497 27.208049 80.067448 53.6377485 1.72947054 -0.091769 91 38 SH17611 17611 YJR021C_10_469271_468247_INTRON_317_396 5' exon 29.473712 118.915405 29.473712 90.441693 59.9577025 1.777844983 -0.103394 91 39 SH6628 6628 snR48 5' 29.512068 71.506656 50.509362 1.703371883 0.174605 91 40 SH9545 9545 RUF3 RUF3 111 128 72.122933 126.937537 99.530235 1.997955029 0.079379 91 41 SH13513 13513 MT COX1 intronic 25.985879 89.731947 25.985879 64.746068 45.3659735 1.656730235 0.027458 91 42 SH9167 9167 snR7 U5 RNA U5 106 118 32.23608 84.504595 58.3703375 1.766192204 0.12155 91 43 SH18966 18966 YOR096W_15_505793_506766_INTRON_145_545 5' exon 30.769345 115.826476 30.769345 86.057131 58.413238 1.766511281 0.03106 91 44 SH9274 9274 RUF1 5' 28.857787 79.775186 54.3164865 1.73493167 0.022808 91 45 SH5171 5171 snR13 snR13 11 32 26.740299 66.183742 46.4620205 1.667098092 0.059586 91 46 SH9118 9118 snR14 / U4 RNA 3' 26.208552 80.653874 53.431213 1.727795034 -0.169595 91 47 SH7638 7638 snR189 3' 30.045769 84.510558 57.2781635 1.757989085 0.027264 91 48 SH14855 14855 MT tRNA Ser2; tRNA Arg2 5' / tRNA Ser 28.011665 107.350534 28.011665 80.338869 54.175267 1.73380106 -0.040312 91 49 SH3494 3494 Tyr1 tRNA 11 27 33.136765 83.032515 58.08464 1.764061302 0.185619 91 50 SH7359 7359 snR68 snR68 16 34 26.654959 68.037658 47.3463085 1.675286124 0.02692 91 51 SH19826 19826 Negative Control 31.155152 102.59208 66.873616 1.825254807 -0.262467 91 52 SH671 671 Gln2 3' flank 33.598915 88.771537 61.185226 1.786646569 0.095903 91 53 SH1588 1588 Leu4 111-114 + 3' flank 111 29.465229 78.26048 53.8628545 1.731289365 0.08125 91 54 SH18585 18585 YNL050C_14_534978_534075_INTRON_18_108 exon/intron 27.488418 98.782847 27.488418 72.294429 49.8914235 1.698025895 0.027982 91 55 SH14776 14776 MT ORF11; tRNA Leu; tRNA Gln intergenic / tRNA Gln 27.328042 101.763931 27.328042 75.435889 51.3819655 1.710810713 -0.024103 91 56 SH10025 10025 RUF6 5' 33.835182 84.313973 59.0745775 1.771400624 0.189843 91 57 SH4417 4417 telomerase RNA telomerase 1121 1137 28.720929 73.542379 51.131654 1.708689841 0.095301 91 58 SH21730 21730 copy of SH12130 26.101901 72.394715 49.248308 1.692391314 -0.073021 91 59 SH1161 1161 His1 tRNA 26 40 30.056641 90.0648 60.0607205 1.778590538 -0.070721 91 60 SH8005 8005 snoRNA cluster 2 intergenic 27.47597 95.380687 27.47597 68.904717 48.1903435 1.682960022 0.073191 91 61 SH4753 4753 snR5 5' 25.54467 72.232335 48.8885025 1.689206735 -0.112424 91 62 SH15949 15949 YDL125C_4_239605_239018_INTRON_98_208 intron/exon 30.70232 116.626597 30.70232 86.924277 58.8132985 1.769475537 0.012631 91 63 SH13295 13295 MT COX1 COX1-ai5a 26.740427 102.185887 26.740427 76.44546 51.5929435 1.712590306 -0.078721 91 64 SH20364 20364 YER131W spliced 40.88441 99.532943 70.2086765 1.846390786 0.026676 91 65 SH21862 21862 copy of SH18012 29.498117 83.987338 56.7427275 1.753910208 0.01225 91 66 SH9303 9303 RUF1 RUF1 91 108 29.850275 83.937314 56.8937945 1.7550649 0.029056 91 67 SH7399 7399 snR68 3' 27.759537 83.708412 55.7339745 1.746120015 -0.098484 91 68 SH5676 5676 snR34 snR34 301 320 27.892559 80.558389 54.225474 1.734203357 -0.051073 91 69 SH15784 15784 YDL029W_4_399336_400634_INTRON_23_145 exon/intron 27.942812 105.996765 27.942812 79.053953 53.4983825 1.728340652 -0.028807 91 70 SH11588 11588 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4826 4839 84.825995 115.470593 100.148294 2.000643556 0.42276 91 71 SH2157 2157 Met2 5' flank 29.615674 86.601038 58.108356 1.764238589 -0.029834 91 72 SH14617 14617 MT 21S rRNA Sce1 endonuc 30.945491 109.628807 30.945491 79.683316 55.3144035 1.742838233 0.155567 91 73 SH11964 11964 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6706 6724 30.531797 75.720001 53.125899 1.725306292 0.181288 91 74 SH13239 13239 MT COX1 COX1-ai4 27.488185 98.907808 27.488185 72.419623 49.953904 1.698569435 0.026306 91 75 SH20731 20731 YJL189W spliced 38.541013 108.695987 73.6185 1.866986964 -0.203536 91 76 SH21366 21366 Leu1_5 spliced 26.431894 82.78364 54.607767 1.737254418 -0.179701 91 77 SH15515 15515 YBR048W_2_332790_333771_INTRON_46_556 intron 47.613039 138.298672 47.613039 91.685633 69.649336 1.84291698 0.32278 91 78 SH5524 5524 snR33 5' 36.369703 86.913815 61.641759 1.789875023 0.206581 91 79 SH6579 6579 snR47 snR47 1 22 26.890422 66.499288 46.694855 1.669269031 0.065804 91 80 SH13264 13264 MT COX1 COX1-ai4 29.405569 112.651516 29.405569 84.245947 56.825758 1.754545237 0.003289 91 81 SH4728 4728 snR4 176-186 + 3' 176 28.998318 77.496033 53.2471755 1.726296576 0.060982 91 82 SH6637 6637 snR48 snR48 11 30 42.422453 94.492636 68.4575445 1.835421317 0.164248 91 83 SH3454 3454 Trp1 101-106 + 3' falnk 101 28.562032 76.263969 52.4130005 1.719439023 0.048465 91 84 SH6475 6475 snR45 3' 28.145162 70.028932 49.087047 1.690966906 0.104004 91 85 SH18503 18503 YMR194W_13_651144_651909_INTRON_17_479 intron 44.962889 203.114104 44.962889 159.151215 102.057052 2.008843019 -0.821485 91 86 SH12476 12476 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 1477.779764 3143.164362 1477.779764 1666.384598 1572.082181 3.196475245 -0.354452 91 87 SH13539 13539 MT COX1 intronic 27.436436 105.865943 27.436436 79.429507 53.4329715 1.727809327 -0.06801 91 88 SH21824 21824 copy of SH16119 28.749548 80.520878 54.635213 1.737472641 0.006412 91 89 SH18466 18466 YMR143W_13_551927_552902_INTRON_25_568 intron 29.785121 118.18891 29.785121 89.403789 59.594455 1.775205852 -0.071471 91 90 SH2054 2054 Lys4 5' flank 27.599906 73.559035 50.5794705 1.703974279 0.019137 91 91 SH1910 1910 Lys1 tRNA 6 18 41.300137 104.661865 72.981001 1.863209816 -0.067618 91 92 SH14648 14648 MT 21S rRNA intronic 26.842264 103.060205 26.842264 77.217941 52.0301025 1.716254681 -0.081049 91 93 SH11224 11224 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3006 3027 26.459912 91.32511 58.892511 1.770060072 -0.27602 91 94 SH12451 12451 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 46.865712 153.367326 46.865712 107.501614 77.183663 1.887525386 -0.013314 91 95 SH6218 6218 snR40 3' 28.85089 72.456683 50.6537865 1.704611916 0.118698 91 96 SH14701 14701 MT tRNA thr2 5' / tRNA 29.164418 111.796727 29.164418 83.632309 56.3983635 1.751266502 -0.004552 91 97 SH2601 2601 Pro3 5' flank 26.618356 82.541565 54.5799605 1.737033217 -0.163524 91 98 SH19836 19836 Negative Control 33.035383 81.027268 57.0313255 1.756113465 0.219336 91 99 SH5700 5700 snR34 snR34 421 438 28.754534 76.53716 52.645847 1.721364117 0.057541 91 100 SH2046 2046 Lys3 3' flank 26.89168 75.036707 50.9641935 1.707265156 -0.05001 91 101 SH14869 14869 MT tRNA Ser2; tRNA Arg2 3' 29.163983 99.545162 29.163983 71.381179 50.272581 1.701331183 0.154008 91 102 SH20525 20525 YGR118W spliced 35.86005 103.766208 69.813129 1.843937103 -0.16712 91 103 SH13355 13355 MT COX1 intronic 26.466602 98.456978 26.466602 72.990376 49.728489 1.696605263 -0.054163 91 104 SH21437 21437 TH204 - control oligo; WTP_219 28.681844 85.098114 56.889979 1.755035773 -0.053385 92 2 SH15180 15180 MT COX3 cox3 44.029826 158.53601 44.029826 115.506184 79.768005 1.90182873 -0.212143 92 3 SH198 198 Arg2 3' flank 25.487947 75.799208 50.6435775 1.704524377 -0.162957 92 4 SH4270 4270 telomerase RNA telomerase 386 405 26.720511 66.46218 46.5913455 1.668305253 0.054132 92 5 SH5499 5499 snR32 snR32 156 173 246.844781 417.396912 332.1208465 2.521296136 -0.480253 92 6 SH17119 17119 YHR010W_8_126513_127484_INTRON_32_592 intron 27.676168 107.64402 27.676168 80.967852 54.32201 1.734975831 -0.070824 92 7 SH190 190 Arg2 66-73 + 3' flank 66 3' flank 51.601645 81.611696 66.6066705 1.823517725 0.62781 92 8 SH1089 1089 Gly4 5' flank 36.763034 99.624108 68.193571 1.833743433 -0.062635 92 9 SH11985 11985 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6811 6829 34.735491 77.874419 56.304955 1.750546616 0.347898 92 10 SH2877 2877 Pro8 5' flank 30.765426 74.031531 52.3984785 1.719318677 0.21823 92 11 SH11796 11796 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5866 5884 928.838796 799.262415 864.0506055 2.936539179 0.186556 92 12 SH16368 16368 YEL012W_5_131772_132551_INTRON_6_128 3' exon 26.526107 99.880643 26.526107 74.354536 50.4403215 1.702777846 -0.067606 92 13 SH1371 1371 Leu1 5' flank 26.909572 72.289265 49.5994185 1.695476585 -0.012936 92 14 SH18244 18244 YML026C_13_223828_222987_INTRON_48_448 3' exon 24.883638 100.737663 24.883638 76.854025 50.8688315 1.706451762 -0.222429 92 15 SH16879 16879 YGL189C_7_148970_148233_INTRON_1_368 5' exon 30.483545 123.248708 30.483545 93.765163 62.124354 1.793261886 -0.114132 92 16 SH18618 18618 YNL069C_14_494998_493953_INTRON_29_477 3' exon 32.301486 132.144961 32.301486 100.843475 66.5724805 1.823294739 -0.196673 92 17 SH20910 20910 YLR333C spliced 28.273258 124.964833 76.6190455 1.884336737 -0.746123 92 18 SH4012 4012 SRP RNA 5' 29.003314 132.908484 80.955899 1.9082485 -0.852264 92 19 SH7184 7184 snR64 5' - 2 -14 2 40.558044 108.065313 74.3116785 1.871057071 -0.148066 92 20 SH13416 13416 MT COX1 intronic 24.868326 94.142293 24.868326 70.273967 47.5711465 1.677343618 -0.137726 92 21 SH14451 14451 MT 21S rRNA 21S rRNA3 1115.399521 2279.401008 1115.399521 1165.001487 1140.200504 3.056981229 -0.165039 92 22 SH1275 1275 Ile2 tRNA-intron 71 86 33.240091 91.054672 62.1473815 1.793422835 0.035159 92 23 SH3742 3742 Val4 5' flank 25.979816 78.485299 52.2325575 1.717941291 -0.159563 92 24 SH25 25 Ala1 tRNA 21 33 30.75815 86.642676 58.700413 1.768641157 0.020083 92 25 SH13918 13918 MT COB Cytbi3 25.538644 101.406117 25.538644 76.867473 51.2030585 1.709295903 -0.17256 92 26 SH13674 13674 MT ATP6 3' 27.160094 103.826897 27.160094 77.666803 52.4134485 1.719442735 -0.064615 92 27 SH13396 13396 MT COX1 intronic 26.839379 94.918618 26.839379 69.079239 47.959309 1.680872917 0.02562 92 28 SH10914 10914 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1456 1469 34.238475 92.924109 63.581292 1.803329349 0.019185 92 29 SH9939 9939 RUF5-1 RUF5-1 501 517 28.039411 73.171727 50.605569 1.704198312 0.054628 92 30 SH14441 14441 MT 21S rRNA 21S rRNA3 28.419195 105.534866 28.419195 78.115671 53.267433 1.726461768 0.014999 92 31 SH14831 14831 "MT tRNAs (Lys, Arg1, Gly)" 3' 28.050417 99.034152 28.050417 71.983735 50.017076 1.699118299 0.071091 92 32 SH5914 5914 snR36 snR36 26 43 38.94135 95.171398 67.056374 1.826440066 0.079039 92 33 SH9723 9723 RUF4 RUF4 391 406 33.375964 92.382144 62.879054 1.798505999 0.009255 92 34 SH20050 20050 YBR191W spliced 30.766996 84.970342 57.868669 1.762443494 0.050619 92 35 SH7065 7065 snR62 3' 82.201835 146.957356 114.5795955 2.059107285 -0.049149 92 36 SH15862 15862 YDL079C_4_314747_312950_INTRON_413_704 intron 33.574848 137.345017 33.574848 104.770169 69.1725085 1.839933525 -0.241196 92 37 SH3795 3795 RNaseP 5' flank 29.276574 85.549884 57.413229 1.759011973 -0.026356 92 38 SH758 758 Gln4 61-72 + 3' flank 61 32.928809 81.544097 57.236453 1.757672712 0.205175 92 39 SH21556 21556 copy of SH4782 29.525248 73.815915 51.6705815 1.713243349 0.143624 92 40 SH8378 8378 snoRNA cluster 5 5' 28.39838 113.172137 28.39838 85.773757 57.0860685 1.756530134 -0.080017 92 41 SH14759 14759 MT ORF11; tRNA Leu; tRNA Gln ORF11 33.861071 120.112006 33.861071 87.250935 60.556003 1.782157202 0.137632 92 42 SH212 212 Arg3 5' flank 28.598362 82.902374 55.750368 1.746247738 -0.032705 92 43 SH17507 17507 YJL136C_10_156971_156248_INTRON_25_484 intron 39.806278 135.666543 39.806278 96.860265 68.3332715 1.834632213 0.060832 92 44 SH19915 19915 YAL003W spliced 28.903631 83.313241 56.108436 1.749028163 -0.017649 92 45 SH14 14 Ala1 5' flank 26.834907 84.183818 55.5093625 1.74436624 -0.167982 92 46 SH7453 7453 snR69 3' 26.3491 78.28371 52.316405 1.718637893 -0.129914 92 47 SH10663 10663 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 201 218 32.302738 95.199543 63.7511405 1.804487959 -0.079685 92 48 SH16740 16740 YGL076C_7_365994_364333_INTRON_565_1032 intron 45.804579 140.308614 45.804579 95.504035 70.654307 1.849138641 0.206831 92 49 SH6744 6744 snR49 3' 28.476048 73.225908 50.850978 1.70629931 0.083485 92 50 SH12699 12699 MT ORF 8 (hypothetical) ORF8 28.976294 108.415239 28.976294 80.438945 54.7076195 1.738047818 0.022234 92 51 SH6878 6878 snR56 snR56 21 38 58.282187 138.755483 98.518835 1.993519268 -0.304334 92 52 SH1232 1232 Ile1 3' flank 29.139268 89.749372 59.44432 1.774110363 -0.106781 92 53 SH6501 6501 snR46 5' - 12 -4 12 31.883556 89.736085 60.8098205 1.783973721 0.013911 92 54 SH16457 16457 YER074W-A_0_5_307649_INTRON_95_196 intron/exon 29.85239 115.373096 29.85239 86.520706 58.186548 1.764822593 -0.017743 92 55 SH15071 15071 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.157974 106.645186 27.157974 80.487212 53.822593 1.730964617 -0.100475 92 56 SH19439 19439 YPR187W_16_911252_911795_INTRON_21_96 exon/intron 301.572177 619.875897 301.572177 319.30372 310.4379485 2.491974805 0.206944 92 57 SH20446 20446 YGL103W spliced 34.166718 82.012642 58.08968 1.764098984 0.245705 92 58 SH11553 11553 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4651 4669 55.736934 111.472845 83.6048895 1.922231677 0.071525 92 59 SH17660 17660 YKL002W_11_437416_438182_INTRON_61_128 intron/exon 24.833272 86.149455 24.833272 62.316183 43.5747275 1.63923468 -0.018472 92 60 SH2727 2727 Pro5 tRNA 16 32 48.733985 87.278256 68.0061205 1.832548001 0.442647 92 61 SH8605 8605 snR19 / U1 RNA U1 521 536 44.930804 108.463861 76.6973325 1.88478026 -0.067775 92 62 SH3263 3263 Thr2 5' flank 25.993899 71.015685 48.504792 1.685784647 -0.062551 92 63 SH7205 7205 snR64 91-101 + 3' 91 31.211056 87.442029 59.3265425 1.773249039 0.02544 92 64 SH6860 6860 snR56 5' 27.058378 71.334538 49.196458 1.691933836 0.010442 92 65 SH15698 15698 YBR220C_2_663261_662457_INTRON_302_722 intron 27.470038 106.220772 27.470038 79.750734 53.610386 1.729248934 -0.069745 92 66 SH5279 5279 snR30 snR30 246 262 27.901388 80.642052 54.27172 1.734573586 -0.051516 92 67 SH3357 3357 Thr3 3' flank 30.474027 85.231326 57.8526765 1.762323456 0.033069 92 68 SH18539 18539 YMR230W_13_732413_733140_INTRON_53_462 intron 30.284257 112.815485 30.284257 83.531228 56.9077425 1.755171358 0.055877 92 69 SH5877 5877 snR35 3' 34.773128 88.423372 61.59825 1.789568374 0.133244 92 70 SH11135 11135 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2561 2574 37.204751 88.774643 62.989697 1.799269519 0.182966 92 71 SH17850 17850 YKR094C_11_618384_617630_INTRON_9_376 3' exon 32.831287 128.26157 32.831287 96.430283 64.630785 1.810439431 -0.091897 92 72 SH18443 18443 YMR142C_13_551206_550205_INTRON_5_406 intron 28.314378 102.372717 28.314378 75.058339 51.6863585 1.713375936 0.04801 92 73 SH1318 1318 Ile3 5' flank 28.026125 80.108029 54.067077 1.732932891 -0.036459 92 74 SH13719 13719 MT tRNAGlu (and 5' processing site for COB) 3' 27.335012 112.155255 27.335012 85.820243 56.5776275 1.752644732 -0.152467 92 75 SH18083 18083 YLR344W_12_819312_820142_INTRON_20_466 intron 31.381907 119.055743 31.381907 88.673836 60.0278715 1.778352944 0.011107 92 76 SH14551 14551 MT 21S rRNA 21S rRNA3 24.223877 91.737592 24.223877 68.513715 46.368796 1.666225819 -0.161264 92 77 SH9924 9924 RUF5-1 RUF5-1 426 445 26.099381 90.686037 58.392709 1.766358624 -0.294838 92 78 SH21500 21500 copy of SH2550 30.474846 96.415716 63.445281 1.802399325 -0.157637 92 79 SH4555 4555 U3b (snR17b) U3b 331 348 26.327553 74.905987 50.61677 1.704294428 -0.089166 92 80 SH19320 19320 YPL198W_16_173151_174701_INTRON_12_420 3' exon 28.666723 117.136961 28.666723 89.470238 59.0684805 1.771355799 -0.123845 92 81 SH19336 19336 YPL241C_16_96258_95372_INTRON_26_105 exon/intron 33.088907 119.836848 33.088907 87.747941 60.418424 1.781169393 0.098236 92 82 SH20393 20393 YFL039C spliced 32.088912 96.084773 64.0868425 1.806768875 -0.104157 92 83 SH2276 2276 Phe2 5' flank 26.691729 72.275646 49.4836875 1.694462056 -0.028408 92 84 SH14028 14028 MT COB Exon4 24.286673 96.984708 24.286673 73.698035 48.992354 1.690128307 -0.228956 92 85 SH14282 14282 MT VAR1 includes 5’ processing site VAR1 25.920982 107.392525 25.920982 82.471543 54.1962625 1.733969338 -0.212696 92 86 SH8449 8449 snoRNA cluster 5 snR128 33.402139 133.065038 33.402139 100.662899 67.032519 1.82628554 -0.164394 92 87 SH17194 17194 YHR021C_8_148660_147862_INTRON_4_553 intron 30.686963 131.225686 30.686963 101.538723 66.112843 1.820285833 -0.254451 92 88 SH11431 11431 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4041 4058 302.916534 236.4675 269.692017 2.430868091 0.700887 92 89 SH20596 20596 YHR039C-A spliced 32.287451 87.82294 60.0551955 1.778550585 0.064097 92 90 SH2961 2961 Ser1 tRNA 36 53 27.392442 70.072612 48.732527 1.687818932 0.0512 92 91 SH20066 20066 YBR230C spliced 31.615791 86.998489 59.30714 1.773106981 0.050552 92 92 SH1481 1481 Leu2 3' flank 33.670341 80.979813 57.325077 1.758344647 0.245723 92 93 SH13127 13127 MT COX1 COX1ai3 26.624388 104.252683 26.624388 78.628295 52.6263415 1.72120318 -0.114468 92 94 SH2747 2747 Pro5 3' flank 28.797655 88.276102 58.5368785 1.76742956 -0.096959 92 95 SH11161 11161 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2691 2716 26.852039 92.096175 59.474107 1.77432793 -0.25672 92 96 SH8132 8132 snoRNA cluster 3; snR41 29.307281 119.514927 29.307281 91.207646 60.2574635 1.780010846 -0.124019 92 97 SH14888 14888 MT tRNA Ala 3' 26.524447 97.322198 26.524447 71.797751 49.161099 1.691621583 -0.03415 92 98 SH21709 21709 copy of SH11289 41.602794 97.277059 69.4399265 1.841609252 0.088294 92 99 SH17010 17010 YGR148C_7_788173_787307_INTRON_1_392 intron 32.636239 119.69047 32.636239 88.054231 60.345235 1.780642983 0.074409 92 100 SH9558 9558 RUF3 RUF3 176 192 1578.561961 1489.077565 1533.819763 3.185774329 -0.091137 92 101 SH9791 9791 RUF4 RUF4 731 748 28.633677 85.894933 57.264305 1.757883994 -0.065884 92 102 SH482 482 Asp2 5' flank 32.801571 95.081636 63.9416035 1.805783523 -0.06407 92 103 SH16184 16184 YDR367W_4_1212837_1213603_INTRON_31_131 intron 28.147843 109.328048 28.147843 82.180205 55.164024 1.741655939 -0.053863 92 104 SH8801 8801 LSR1 / U2 RNA U2 646 658 30.500819 86.243578 58.3721985 1.766206051 0.01598 93 2 SH16589 16589 YFL034C-A_6_64931_64242_INTRON_13_333 intron 38.475466 143.304475 38.475466 105.829009 72.1522375 1.858249803 -0.149802 93 3 SH15795 15795 YDL061C_4_341182_340627_INTRON_1_408 exon/intron 28.586947 109.415591 28.586947 81.828644 55.2077955 1.742000406 -0.020405 93 4 SH11984 11984 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6806 6823 153.698786 164.168118 158.933452 2.201215316 0.479821 93 5 SH7410 7410 snR69 5' 32.607901 81.239194 56.9235475 1.755291958 0.197863 93 6 SH6207 6207 snR40 96-97 + 3' 96 27.387794 69.654563 48.5211785 1.685931341 0.056615 93 7 SH17190 17190 YHR021C_8_148660_147862_INTRON_4_553 intron 28.975559 117.077769 28.975559 89.10221 59.0388845 1.771138143 -0.103126 93 8 SH10024 10024 RUF6 5' 35.169315 106.354194 70.7617545 1.849798592 -0.233935 93 9 SH2330 2330 Phe3 5' flank 28.197208 95.935833 62.0665205 1.792857399 -0.253885 93 10 SH3797 3797 RNaseP 5' flank 32.926676 93.751399 63.3390375 1.80167146 -0.032206 93 11 SH12291 12291 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.802043 122.321019 30.802043 92.518976 61.6605095 1.790007109 -0.079523 93 12 SH1461 1461 Leu2 tRNA 76 92 991.984792 879.317048 935.65092 2.971113849 0.122506 93 13 SH4558 4558 U3b (snR17b) U3b 346 363 28.167128 89.925487 59.0463075 1.771192744 -0.155227 93 14 SH46 46 Ala1 3' flank 27.97349 99.024136 63.498813 1.802765607 -0.313561 93 15 SH10570 10570 RUF8 RUF8 776 792 27.128256 104.774818 65.951537 1.819224921 -0.441952 93 16 SH17160 17160 YHR016C_8_138446_136872_INTRON_48_215 exon/intron 31.003916 98.332379 31.003916 68.328463 49.6661895 1.696060841 0.313041 93 17 SH11635 11635 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5061 5078 46.348992 69.756514 58.052753 1.76382282 0.860376 93 18 SH7721 7721 snoRNA cluster1 snR77 39.380321 130.821027 39.380321 92.440706 65.9105135 1.818954695 0.148309 93 19 SH7814 7814 snoRNA cluster1 intergenic 30.187018 124.445331 30.187018 95.258313 62.7226655 1.797424506 -0.151656 93 20 SH21842 21842 copy of SH17172 38.819326 85.152897 61.9861115 1.792294393 0.303858 93 21 SH18808 18808 YNL301C_14_64561_63569_INTRON_113_544 3' exon 28.042577 98.419057 28.042577 71.37648 49.7095285 1.696439644 0.078682 93 22 SH7319 7319 snR66 86 + 3' 86 30.675658 82.572232 56.623945 1.753000123 0.090927 93 23 SH4072 4072 SRP RNA SRP RNA 251 267 40.291648 83.436895 61.8642715 1.791439903 0.377016 93 24 SH6465 6465 snR45 171-172 + 3' 171 28.0173 79.166327 53.5918135 1.729098453 -0.025213 93 25 SH14020 14020 MT COB Exon4 27.575461 98.838067 27.575461 72.262606 49.9190335 1.698266168 0.034493 93 26 SH2899 2899 Pro8 tRNA 16 32 48.026852 90.431153 69.2290025 1.840288074 0.35814 93 27 SH3794 3794 RNaseP 5' flank 31.417827 105.049099 68.233463 1.833997413 -0.30335 93 28 SH12135 12135 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7561 7574 32.037517 83.009659 57.523588 1.759845967 0.140892 93 29 SH19664 19664 SIR1 2.4 28.060975 76.978287 52.519631 1.720321666 0.005784 93 30 SH13229 13229 MT COX1 COX1-ai4 28.249371 112.278309 28.249371 85.028938 56.6391545 1.753116762 -0.081198 93 31 SH4691 4691 snR4 5' - 8 8 30.117408 84.676841 57.3971245 1.758890136 0.027411 93 32 SH9477 9477 RUF2 RUF2 226 241 33.891399 92.64214 63.2667695 1.801175659 0.016647 93 33 SH1816 1816 Leu8 3' flank 28.545782 69.441895 48.9938385 1.690141466 0.1393 93 34 SH1465 1465 Leu2 tRNA 96 112 39.510811 94.850524 67.1806675 1.827244315 0.09795 93 35 SH5535 5535 snR33 5' 26.07996 75.107999 50.5939795 1.70409884 -0.109947 93 36 SH16855 16855 YGL183C_7_157071_156547_INTRON_4_86 3' exon 40.192991 135.894112 40.192991 96.701121 68.447056 1.835354773 0.072178 93 37 SH20886 20886 YLR275W spliced 26.806794 68.364034 47.585414 1.677473852 0.033267 93 38 SH18050 18050 YLR333C_12_796335_795573_INTRON_1_423 intron 26.979812 100.490992 26.979812 74.51118 50.745496 1.705397502 -0.036965 93 39 SH20934 20934 YLR406C spliced 33.987547 93.630079 63.808813 1.804880666 -0.002472 93 40 SH1193 1193 Ile1 5' flank 26.883986 83.214713 55.0493495 1.740752191 -0.152947 93 41 SH16398 16398 YER056C-A_5_270183_269421_INTRON_38_434 5' exon 26.550333 108.714097 26.550333 83.163764 54.8570485 1.739232437 -0.175864 93 42 SH1878 1878 Leu9 3' flank 28.446305 78.292178 53.3692415 1.727291031 0.014536 93 43 SH9304 9304 RUF1 RUF1 96 112 30.800389 86.197269 58.498829 1.767147173 0.029893 93 44 SH14105 14105 MT COB Cytbi4 24.416552 92.867786 24.416552 69.451234 46.933893 1.671486579 -0.160267 93 45 SH12085 12085 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7311 7328 38.161898 98.121319 68.1416085 1.833412381 -0.000559 93 46 SH5765 5765 snR35 snR35 11 28 28.479789 73.507345 50.993567 1.707515392 0.079891 93 47 SH14791 14791 "MT tRNAs (Lys, Arg1, Gly)" 5' 30.330676 121.646055 30.330676 92.315379 61.3230275 1.787623588 -0.096755 93 48 SH10566 10566 RUF8 RUF8 756 771 30.524765 76.438996 53.4818805 1.728206669 0.171392 93 49 SH16790 16790 YGL103W_7_310965_311925_INTRON_50_560 intron 26.545752 100.032964 26.545752 74.487212 50.516482 1.703433098 -0.067891 93 50 SH14200 14200 MT COB Exon6 29.104411 105.717698 29.104411 77.613287 53.358849 1.727206453 0.066349 93 51 SH18811 18811 YNL302C_14_62942_61957_INTRON_21_571 exon/intron 29.052312 109.668246 29.052312 81.615934 55.334123 1.742993031 0.012627 93 52 SH3322 3322 Thr3 5' flank 31.360038 74.202815 52.7814265 1.722481124 0.251984 93 53 SH17926 17926 YLR078C_12_286560_285737_INTRON_4_92 intron 29.331213 116.870872 29.331213 88.539659 58.935436 1.770376501 -0.077 93 54 SH9596 9596 RUF3 RUF3 366 387 27.262547 70.327048 48.7947975 1.68837352 0.038568 93 55 SH9630 9630 RUF4 5' 31.575338 90.502811 61.0390745 1.78560794 -0.012252 93 56 SH10536 10536 RUF8 RUF8 606 623 32.66097 90.22017 61.44057 1.788455236 0.037831 93 57 SH19364 19364 YPR028W_16_623522_624197_INTRON_52_184 intron 31.309416 120.013839 31.309416 89.704423 60.5069195 1.781805043 -0.009864 93 58 SH9507 9507 RUF3 5' 48.287261 105.443314 76.8652875 1.885730256 0.051889 93 59 SH15436 15436 YBL072C_2_89435_88518_INTRON_1_308 intron 26.767168 110.020352 26.767168 84.253184 55.510176 1.744372604 -0.173569 93 60 SH6421 6421 snR45 5' 26.999118 79.304437 53.1517775 1.725517793 -0.096707 93 61 SH3335 3335 Thr3 tRNA 21 35 25.161395 83.544273 54.352834 1.735222193 -0.281674 93 62 SH12891 12891 MT COX1 COX1ai1 25.724226 110.028241 25.724226 85.304015 55.5141205 1.744403464 -0.260862 93 63 SH18849 18849 YNL312W_14_48286_49215_INTRON_8_115 3' exon 28.615837 111.154701 28.615837 83.538864 56.0773505 1.748787486 -0.039211 93 64 SH9097 9097 snR14 / U4 RNA U4 101 115 31.444242 84.414826 57.929534 1.762900035 0.089907 93 65 SH2717 2717 Pro5 5' flank 27.230881 69.089459 48.16017 1.682688011 0.053367 93 66 SH5235 5235 snR30 snR30 26 41 942.256479 926.901222 934.5788505 2.970615949 -0.027892 93 67 SH15018 15018 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.979838 96.97036 27.979838 69.990522 48.98518 1.690064708 0.093185 93 68 SH21790 21790 copy of SH14650 160.048364 252.146002 206.097183 2.314072056 -0.193334 93 69 SH20159 20159 YDL130W spliced 30.082958 90.980996 60.531977 1.781984858 -0.085207 93 70 SH12396 12396 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.70344 100.584495 27.70344 73.881055 50.7922475 1.70579743 0.022156 93 71 SH4 4 Ala1 5' flank 27.906736 80.429301 54.1680185 1.733742949 -0.04851 93 72 SH16286 16286 YDR450W_4_1359912_1360787_INTRON_48_482 5' exon 27.964975 97.273387 27.964975 70.308412 49.1366935 1.691405929 0.087813 93 73 SH10718 10718 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 476 493 29.788375 86.013344 57.9008595 1.762685011 -0.011518 93 74 SH21324 21324 YPR028W spliced 28.873569 82.980653 55.927111 1.747622386 -0.015605 93 75 SH10978 10978 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1776 1794 389.840716 424.248738 407.044727 2.609642133 0.07509 93 76 SH13724 13724 MT COB 5' 26.177966 91.477252 26.177966 66.299286 46.238626 1.66500492 0.017133 93 77 SH12581 12581 MT_15S MT_15S 32.630981 115.033759 32.630981 83.402778 58.0168795 1.763554366 0.158149 93 78 SH14989 14989 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.884432 115.746084 27.884432 88.861652 58.373042 1.766212326 -0.150318 93 79 SH12921 12921 MT COX1 COX1ai2 27.846731 100.918852 27.846731 74.072121 50.959426 1.707224528 0.029613 93 80 SH16164 16164 YDR139C_4_733917_733611_INTRON_150_222 5' exon 36.916096 128.779296 36.916096 92.8632 64.889648 1.812175418 0.084875 93 81 SH12511 12511 MT_ORF6 + ORF7 (hypothetical) 5' 26.297401 96.586272 26.297401 71.288871 48.793136 1.688358732 -0.04388 93 82 SH15875 15875 YDL082W_4_308423_309387_INTRON_5_369 exon/intron 29.113996 110.563854 29.113996 82.449858 55.781927 1.746493513 0.006445 93 83 SH12021 12021 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6991 7008 32.851247 89.895776 61.3735115 1.787980972 0.051113 93 84 SH19420 19420 YPR132W_16_794960_795762_INTRON_66_430 intron 30.251825 122.03767 30.251825 92.785845 61.518835 1.789008103 -0.108103 93 85 SH14779 14779 MT ORF11; tRNA Leu; tRNA Gln tRNA Gln 28.614365 98.573791 28.614365 70.959426 49.7868955 1.697115046 0.123178 93 86 SH2789 2789 Pro6 tRNA-exon/intron 36 48 33.078774 90.663973 61.8713735 1.791489757 0.039733 93 87 SH7672 7672 snoRNA cluster1 snR78 29.124061 110.802659 29.124061 82.678598 55.9013295 1.747422137 0.004322 93 88 SH17997 17997 YLR287C-A_12_713158_712537_INTRON_4_433 intron 27.462905 99.583737 27.462905 73.120832 50.2918685 1.701497771 0.015287 93 89 SH14862 14862 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 27.681369 96.512682 27.681369 69.831313 48.756341 1.688031106 0.074716 93 90 SH12875 12875 MT COX1 COX1ai1 29.783079 118.618462 29.783079 89.835383 59.809231 1.776768218 -0.079013 93 91 SH6658 6658 snR48 3' 34.154143 91.366905 62.760524 1.797686561 0.051394 93 92 SH11194 11194 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2856 2876 27.059058 80.622768 53.840913 1.731112416 -0.109035 93 93 SH12187 12187 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7821 7838 29.285025 69.516236 49.4006305 1.693732492 0.187511 93 94 SH4775 4775 snR5 snR5 46 60 40.909766 106.819454 73.86461 1.868436409 -0.117145 93 95 SH14286 14286 MT VAR1 includes 5’ processing site VAR1 27.208439 102.425899 27.208439 76.21746 51.7129495 1.713599309 -0.042441 93 96 SH471 471 Asp2 5' flank 31.862341 87.36565 59.6139955 1.77534823 0.054434 93 97 SH18838 18838 YNL302C_14_62942_61957_INTRON_21_571 intron 27.808281 99.241133 27.808281 72.432852 50.1205665 1.700015971 0.048427 93 98 SH21037 21037 YMR125W spliced 37.173817 99.856599 68.515208 1.835786981 -0.058301 93 99 SH16209 16209 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 28.095739 104.030953 28.095739 76.935214 52.5154765 1.72028731 0.008677 93 100 SH14803 14803 "MT tRNAs (Lys, Arg1, Gly)" intergenic 28.356348 98.266244 28.356348 70.909896 49.633122 1.695771594 0.106404 93 101 SH10279 10279 RUF7 RUF7 6 23 28.232441 81.874001 55.053221 1.740782733 -0.044471 93 102 SH4411 4411 telomerase RNA telomerase 1091 1109 27.736797 64.102132 45.9194645 1.661996815 0.160714 93 103 SH4918 4918 snR9 5' - 13 13 31.827539 91.911998 61.8697685 1.791478491 -0.025506 93 104 SH9694 9694 RUF4 RUF4 246 266 27.426244 77.401966 52.414105 1.719448174 -0.042821 94 2 SH13584 13584 MT COX1 Exon 6 59.765442 179.384166 59.765442 120.618724 90.192083 1.955168417 -0.014279 94 3 SH12795 12795 MT COX1 COX1ai1 26.224123 98.142251 26.224123 72.918128 49.5711255 1.69522878 -0.070937 94 4 SH12605 12605 MT_15S MT_15S 28.092093 105.496455 28.092093 78.404362 53.2482275 1.726305156 -0.010507 94 5 SH13015 13015 MT COX1 COX1ai2 28.093081 104.57164 28.093081 77.478559 52.78582 1.722517272 0.001452 94 6 SH8276 8276 snoRNA cluster4 snR67/intergenic 30.011108 114.669512 30.011108 85.658404 57.834756 1.762188908 0.004849 94 7 SH19421 19421 YPR132W_16_794960_795762_INTRON_66_430 intron 29.480542 122.444142 29.480542 93.9636 61.722071 1.79044049 -0.162182 94 8 SH14264 14264 MT VAR1 includes 5’ processing site 5' / var1 26.84837 102.080713 26.84837 76.232343 51.5403565 1.712147418 -0.068284 94 9 SH3062 3062 Ser3 tRNA 6 18 786.056443 1010.514395 898.285419 2.95341435 -0.40149 94 10 SH21809 21809 copy of SH15489 28.819277 76.581802 52.7005395 1.721815061 0.061195 94 11 SH13955 13955 MT COB Cytbi3 28.438276 112.725498 28.438276 85.287222 56.862749 1.754827852 -0.071677 94 12 SH16454 16454 YER074W-A_0_5_307649_INTRON_95_196 intron 27.544141 105.98741 27.544141 79.443269 53.493705 1.728302678 -0.060801 94 13 SH21000 21000 YML085C spliced 32.506181 99.756517 66.131349 1.820407382 -0.169267 94 14 SH4900 4900 snR9 5' 41.184724 100.257821 70.7212725 1.849550066 0.01773 94 15 SH11683 11683 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5301 5314 42.377463 102.213293 72.295378 1.859110533 0.002469 94 16 SH8780 8780 LSR1 / U2 RNA U2 541 553 52.650478 128.001037 90.3257575 1.955811612 -0.250267 94 17 SH12437 12437 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.211411 180.852943 26.211411 155.641532 90.9264715 1.958690338 -1.261219 94 18 SH5692 5692 snR34 snR34 381 399 27.674623 85.365127 56.519875 1.752201193 -0.123878 94 19 SH17539 17539 YJL177W_10_90783_91654_INTRON_310_626 intron 26.776037 110.751985 26.776037 84.975948 55.8759925 1.74722525 -0.181497 94 20 SH14998 14998 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.83493 98.331683 27.83493 71.496753 49.6658415 1.696057798 0.062753 94 21 SH2074 2074 Lys4 tRNA-exon/intron 36 53 26.04168 78.253645 52.1476625 1.717234846 -0.152146 94 22 SH15083 15083 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.388431 108.091228 28.388431 80.702797 54.545614 1.736759835 -0.019664 94 23 SH17374 17374 YIL052C_9_257061_256224_INTRON_38_509 intron 27.980324 119.005547 27.980324 92.025223 60.0027735 1.778171325 -0.199839 94 24 SH16162 16162 YDR129C_4_715372_713333_INTRON_22_132 intron/exon 27.597438 113.829867 27.597438 87.232429 57.4149335 1.759024866 -0.150806 94 25 SH2974 2974 Ser1 3' flank 27.245317 75.876833 51.561075 1.712321963 -0.035534 94 26 SH21683 21683 copy of SH10033 29.228766 68.422069 48.8254175 1.688645966 0.199032 94 27 SH21244 21244 YOR312C spliced 29.295171 78.912067 54.103619 1.733226316 0.062043 94 28 SH4363 4363 telomerase RNA telomerase 851 867 27.484296 88.689699 58.0869975 1.764078929 -0.175134 94 29 SH19781 19781 Negative Control 30.379985 95.161093 62.770539 1.797755858 -0.141548 94 30 SH17306 17306 YHR203C_8_505526_504472_INTRON_15_283 intron 29.348662 107.367434 29.348662 79.018772 54.183717 1.733868794 0.064127 94 31 SH8266 8266 snoRNA cluster4 snR67 32.61184 122.538689 32.61184 90.926849 61.7693445 1.790772993 0.021703 94 32 SH10513 10513 RUF8 RUF8 491 515 27.376104 76.146065 51.7610845 1.714003367 -0.02989 94 33 SH12567 12567 MT_15S MT_15S 26.888056 103.409706 26.888056 77.52165 52.204853 1.717710877 -0.081709 94 34 SH2405 2405 Phe4 76-91 + 3' flank 76 35.683236 96.188558 65.935897 1.819121919 -0.015602 94 35 SH10698 10698 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 376 394 28.811659 90.032603 59.422131 1.773948222 -0.126788 94 36 SH3397 3397 Thr4 71-72 + 3' flank 71 26.769287 81.205129 53.987208 1.732290868 -0.136527 94 37 SH15812 15812 YDL061C_4_341182_340627_INTRON_1_408 intron 31.596687 117.101983 31.596687 86.505296 59.0509915 1.771227194 0.058537 94 38 SH11971 11971 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6741 6760 318.408218 386.466655 352.4374365 2.547082034 -0.032515 94 39 SH12406 12406 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.605845 116.347629 33.605845 83.741784 58.6738145 1.768444323 0.191274 94 40 SH10806 10806 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 916 934 1199.606908 1381.614676 1290.610792 3.110795292 -0.336101 94 41 SH16469 16469 YER102W_5_362729_363698_INTRON_1_360 5' exon 56.967441 168.309225 56.967441 112.341784 84.6546125 1.927650626 0.077209 94 42 SH16267 16267 YDR447C_4_1355542_1354818_INTRON_4_317 5' exon 38.574742 136.5718 38.574742 98.997058 68.7859 1.837499424 -0.010033 94 43 SH11595 11595 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4861 4874 28.673064 78.512923 53.5929935 1.729108016 0.026677 94 44 SH20184 20184 YDL191W spliced 31.316203 85.629329 58.472766 1.766953638 0.062348 94 45 SH15298 15298 MT 9S rRNA 3' 26.514749 92.367769 26.514749 66.85302 46.6838845 1.669166986 0.033618 94 46 SH12191 12191 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7841 7857 32.90003 87.191644 60.045837 1.778482903 0.100413 94 47 SH15903 15903 YDL083C_4_307788_306925_INTRON_25_456 intron 61.247955 165.935563 61.247955 105.687608 83.4677815 1.92151887 0.264196 94 48 SH13702 13702 MT tRNAGlu (and 5' processing site for COB) 5' 26.642637 101.331337 26.642637 75.6887 51.1656685 1.708978653 -0.07623 94 49 SH17873 17873 YLL050C_12_40413_39803_INTRON_15_193 3' exon 29.273484 108.147814 29.273484 79.87433 54.573907 1.736985046 0.048513 94 50 SH7925 7925 snoRNA cluster1 snR72 33.81436 128.913379 33.81436 96.099019 64.9566895 1.812623883 -0.059691 94 51 SH11443 11443 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4101 4118 11477.81412 9130.083494 10303.94881 4.013003692 -0.371029 94 52 SH8124 8124 snoRNA cluster 3; snR41 30.965292 112.911071 30.965292 82.945779 56.9555355 1.755535939 0.096523 94 53 SH8060 8060 snoRNA cluster 2 intergenic/snR61 28.77074 112.994225 28.77074 85.223485 56.9971125 1.755852855 -0.049029 94 54 SH431 431 Asp1 5' flank 26.730835 76.887514 51.8091745 1.714406673 -0.084945 94 55 SH14108 14108 MT COB cytbi4/intronic 26.701292 100.849774 26.701292 75.148482 50.924887 1.706930074 -0.065122 94 56 SH4600 4600 snR3 5' 71.201147 119.774755 95.487951 1.979948574 0.173247 94 57 SH20707 20707 YJL024C spliced 25.239488 73.331171 49.2853295 1.692717664 -0.150058 94 58 SH11012 11012 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1946 1964 31.352636 76.85574 54.104188 1.733230883 0.216369 94 59 SH10066 10066 RUF6 RUF6 176 192 29.482726 85.553576 57.518151 1.759804917 -0.017031 94 60 SH5003 5003 snR10 snR10 46 60 29.703657 77.434959 53.569308 1.728916036 0.107053 94 61 SH7018 7018 snR60 3' 29.602184 77.498014 53.550099 1.728760278 0.09979 94 62 SH21873 21873 copy of SH18603 42.099736 93.765807 67.9327715 1.832079333 0.173892 94 63 SH9737 9737 RUF4 RUF4 461 477 25.834279 72.176971 49.005625 1.690245932 -0.089978 94 64 SH11911 11911 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6441 6459 53.446705 111.5938 82.5202525 1.916560548 0.029612 94 65 SH10353 10353 RUF7 RUF7 376 392 40.915779 89.632103 65.273941 1.814739835 0.24342 94 66 SH13977 13977 MT COB intronic 28.36993 103.825026 28.36993 76.455096 52.412513 1.719434983 0.033243 94 67 SH21879 21879 copy of SH18399 30.05428 69.74103 49.897655 1.698080136 0.23394 94 68 SH1833 1833 Leu9 5' flank 30.326615 86.741055 58.533835 1.767406979 -0.000584 94 69 SH1862 1862 Leu9 tRNA-intron/exon 51 70 30.357411 78.827675 54.592543 1.737133325 0.130225 94 70 SH15927 15927 YDL108W_4_267697_268698_INTRON_29_109 intron 29.096029 109.199197 29.096029 81.103168 55.0995985 1.741148434 0.02177 94 71 SH15686 15686 YBR191W_2_606228_607098_INTRON_12_399 intron 34.941436 129.066269 34.941436 95.124833 65.0331345 1.813134687 -0.010976 94 72 SH3706 3706 Val3 tRNA 11 25 91.423368 183.747678 137.585523 2.138572739 -0.324823 94 73 SH17779 17779 YKL180W_11_109271_110131_INTRON_310_615 intron 24.300377 95.62694 24.300377 72.326563 48.31347 1.684068231 -0.209844 94 74 SH16636 16636 YFR024C-A_6_203420_201947_INTRON_48_165 intron 39.220146 139.549531 39.220146 101.329385 70.2747655 1.846799405 -0.044412 94 75 SH18810 18810 YNL302C_14_62942_61957_INTRON_21_571 5' exon 47.002028 152.433812 47.002028 106.431784 76.716906 1.884891079 0.009212 94 76 SH8640 8640 snR19 / U1 RNA 3' 25.826884 66.393345 46.1101145 1.663796201 -0.009546 94 77 SH18392 18392 YMR116C_13_500687_499455_INTRON_538_810 3' exon 27.944265 110.825246 27.944265 83.880981 55.912623 1.747509867 -0.088049 94 78 SH6877 6877 snR56 snR56 16 35 45.228352 120.431569 82.8299605 1.918187454 -0.271348 94 79 SH17238 17238 YHR079C-A_8_262554_262193_INTRON_114_199 exon/intron 27.403456 115.175315 27.403456 88.771859 58.0876575 1.764083863 -0.181611 94 80 SH16930 16930 YGR001C_7_498029_497128_INTRON_36_97 3' exon 36.53837 128.721189 36.53837 93.182819 64.8605945 1.811980925 0.069107 94 81 SH17250 17250 YHR097C_8_298611_297387_INTRON_126_249 intron 28.677566 109.779415 28.677566 82.101849 55.3897075 1.743429072 -0.017779 94 82 SH4271 4271 telomerase RNA telomerase 391 408 27.253856 73.870984 50.56242 1.703827852 -0.009222 94 83 SH9584 9584 RUF3 RUF3 306 325 27.371673 74.207269 50.789471 1.705773689 -0.005274 94 84 SH7868 7868 snoRNA cluster1 snR73 31.432716 107.950751 31.432716 77.518035 54.4753755 1.736200233 0.212584 94 85 SH7761 7761 snoRNA cluster1 snR76 37.671088 140.367642 37.671088 103.696554 70.683821 1.849320018 -0.125199 94 86 SH6162 6162 snR39B 3' 26.413629 73.374944 49.8942865 1.698050816 -0.063064 94 87 SH20995 20995 YML073C spliced 29.201439 89.646315 59.423877 1.773960983 -0.102151 94 88 SH914 914 Glu3 3' flank 27.41742 74.242015 50.8297175 1.706117696 -0.002507 94 89 SH2366 2366 Phe3 3' flank 29.964309 74.862165 52.413237 1.719440982 0.157345 94 90 SH2440 2440 Phe5 5' flank 59.752462 122.28852 91.020491 1.959139174 -0.040514 94 91 SH11633 11633 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5051 5066 244.332214 191.912686 218.12245 2.338700367 0.777875 94 92 SH18337 18337 YML124C_13_23684_22049_INTRON_26_323 intron 27.359061 93.209557 27.359061 66.850496 47.1047785 1.673064966 0.094022 94 93 SH17017 17017 YGR148C_7_788173_787307_INTRON_1_392 intron 29.674042 113.522419 29.674042 84.848377 57.2612095 1.757860517 0.00443 94 94 SH7741 7741 snoRNA cluster1 intergenic 27.345683 86.754548 27.345683 60.408865 43.877274 1.642239638 0.193257 94 95 SH14964 14964 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 29.772528 122.933063 29.772528 94.160535 61.9665315 1.792157188 -0.152229 94 96 SH7911 7911 snoRNA cluster1 intergenic 27.35493 98.582246 27.35493 72.227316 49.791123 1.697151922 0.019499 94 97 SH8892 8892 LSR1 / U2 RNA U2 1101 1113 29.109378 75.817788 52.463583 1.719857947 0.090105 94 98 SH15075 15075 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.274766 101.898237 26.274766 76.623471 51.4491185 1.711377938 -0.114785 94 99 SH1239 1239 Ile1 3' flank 32.81187 84.377331 58.5946005 1.767857598 0.147577 94 100 SH18862 18862 YNR053C_14_723108_721117_INTRON_811_1341 intron 32.954741 121.849816 32.954741 89.895075 61.424908 1.788344515 0.053817 94 101 SH2006 2006 Lys3 5' flank 28.246185 80.127981 54.187083 1.733895773 -0.021972 94 102 SH20974 20974 YML034W spliced 38.712395 99.705249 69.208822 1.840161457 -0.021805 94 103 SH19992 19992 YBL092W spliced 38.295682 91.277425 64.7865535 1.811484877 0.151211 94 104 SH16596 16596 YFL034C-A_6_64931_64242_INTRON_13_333 intron 31.745838 121.938297 31.745838 91.192459 61.4691485 1.788657197 -0.016788 95 2 SH10153 10153 RUF6 RUF6 611 632 27.24671 78.949009 53.0978595 1.725077014 -0.075009 95 3 SH18085 18085 YLR344W_12_819312_820142_INTRON_20_466 intron 32.676073 139.399856 32.676073 107.723783 70.199928 1.846336667 -0.320843 95 4 SH965 965 Gly1 3' flank 27.913528 78.552374 53.232951 1.726180542 -0.02441 95 5 SH14401 14401 MT 21S rRNA 21S rRNA3 27.604324 103.396222 27.604324 76.791898 52.198111 1.717654787 -0.022704 95 6 SH9889 9889 RUF5-1 RUF5-1 251 268 29.425496 71.771672 50.598584 1.704138363 0.165366 95 7 SH14725 14725 MT tRNA cys; tRNA his intergenic 29.184239 100.163482 29.184239 71.979243 50.581741 1.703993773 0.146963 95 8 SH268 268 Arg4 5' flank 27.047305 81.105268 54.0762865 1.73300686 -0.115828 95 9 SH5148 5148 snR11 3' 29.536336 82.0297 55.783018 1.746502007 0.038696 95 10 SH18986 18986 YOR096W_15_505793_506766_INTRON_145_545 intron 31.707171 120.447663 31.707171 89.740492 60.7238315 1.783359166 0.00641 95 11 SH18110 18110 YLR367W_12_855877_857316_INTRON_698_1180 intron 31.049107 123.004269 31.049107 92.955162 62.0021345 1.792406641 -0.076106 95 12 SH15669 15669 YBR191W_2_606228_607098_INTRON_12_399 5' exon 34.273614 120.491967 34.273614 87.218353 60.7459835 1.783517568 0.148741 95 13 SH1064 1064 Gly3 tRNA 56 68 32.666004 88.163413 60.4147085 1.781142684 0.073712 95 14 SH21670 21670 copy of SH9620 23.414985 72.880156 48.1475705 1.682574378 -0.28753 95 15 SH5691 5691 snR34 snR34 376 392 50.99408 135.885666 93.439873 1.970532239 -0.396354 95 16 SH17583 17583 YJL191W_10_73786_74610_INTRON_11_418 intron 26.132667 139.283549 26.132667 114.150882 70.1417745 1.845976749 -0.629516 95 17 SH4073 4073 SRP RNA SRP RNA 256 270 53.790701 92.334717 73.062709 1.863695771 0.413031 95 18 SH5043 5043 snR10 3' 26.714182 71.128732 48.921457 1.689499383 -0.01144 95 19 SH13899 13899 MT COB intronic 27.651275 97.280012 27.651275 70.628737 49.140006 1.691435205 0.061726 95 20 SH4151 4151 SRP RNA SRP RNA 646 663 30.691582 85.498993 58.0952875 1.764140905 0.037739 95 21 SH12144 12144 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7606 7624 28.526733 86.768536 57.6476345 1.760781491 -0.083065 95 22 SH10303 10303 RUF7 RUF7 126 140 28.242628 77.098032 52.67033 1.721566039 0.016385 95 23 SH19413 19413 YPR098C_16_729525_728944_INTRON_48_143 3' exon 27.598443 100.19627 27.598443 73.597827 50.598135 1.704134509 0.018529 95 24 SH18624 18624 YNL096C_14_444312_443395_INTRON_145_489 intron 36.276926 121.913592 36.276926 86.636666 61.456796 1.788569915 0.210883 95 25 SH7793 7793 snoRNA cluster1 snR75 29.073905 111.708276 29.073905 83.634371 56.354138 1.750925811 -0.010433 95 26 SH19717 19717 Negative Control 29.052924 85.716532 57.384728 1.758796327 -0.03963 95 27 SH3260 3260 Thr2 5' flank 26.839899 75.837021 51.33846 1.710442837 -0.063903 95 28 SH10535 10535 RUF8 RUF8 601 618 27.121565 82.300937 54.711251 1.738076645 -0.125314 95 29 SH16065 16065 YDR005C_4_458099_456832_INTRON_7_86 5' exon 27.587859 94.19452 27.587859 67.606661 47.59726 1.677581953 0.099267 95 30 SH16675 16675 YFR032C-A_6_223758_223245_INTRON_1_331 intron/exon 30.276929 119.948498 30.276929 90.671569 60.474249 1.781570484 -0.071335 95 31 SH11615 11615 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4961 4978 764.701819 480.478606 622.5902125 2.794202289 0.738751 95 32 SH2110 2110 Met1 5' flank 27.698974 76.318613 52.0087935 1.716076779 -0.010064 95 33 SH2151 2151 Met1 3' flank 28.637016 83.439158 56.038087 1.748483301 -0.036621 95 34 SH20451 20451 YGL137W spliced 29.638234 88.353709 58.9959715 1.770822357 -0.059811 95 35 SH9985 9985 RUF5-1 RUF5-1 731 752 27.334807 66.193555 46.764181 1.669913333 0.101791 95 36 SH13708 13708 MT tRNAGlu (and 5' processing site for COB) tRNA 39.175753 130.56019 39.175753 92.384437 65.780095 1.818094496 0.14528 95 37 SH16555 16555 YER133W_5_432491_433954_INTRON_178_702 intron 27.269853 114.366718 27.269853 88.096865 57.683359 1.761050542 -0.183177 95 38 SH12943 12943 MT COX1 COX1ai2 29.137191 114.854739 29.137191 86.717548 57.9273695 1.762883807 -0.053715 95 39 SH21536 21536 copy of SH3942 26.233169 65.743646 45.9884075 1.662648371 0.029623 95 40 SH2772 2772 Pro6 5' flank 30.301064 84.74622 57.523642 1.759846375 0.03428 95 41 SH7312 7312 snR66 snR66 51 67 117.95895 181.748395 149.8536725 2.175667391 -0.007357 95 42 SH4082 4082 SRP RNA SRP RNA 301 316 32.912187 83.284277 58.098232 1.764162916 0.171834 95 43 SH12519 12519 MT_ORF6 + ORF7 (hypothetical) ORF6/7 26.625336 92.049509 26.625336 66.424173 46.5247545 1.66768409 0.047809 95 44 SH16568 16568 YER133W_5_432491_433954_INTRON_178_702 intron 26.918391 108.175153 26.918391 82.256762 54.5875765 1.737093814 -0.138945 95 45 SH11757 11757 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5671 5684 2074.243495 1575.549122 1824.896309 3.261238193 0.17914 95 46 SH9257 9257 snR6 / U6 RNA 3' 40.186031 92.361158 66.2735945 1.821340526 0.166748 95 47 SH7602 7602 snR189 snR189 81 98 28.811279 78.274508 53.5428935 1.728701837 0.038783 95 48 SH7973 7973 snoRNA cluster 2 snR57 54.602849 166.124316 54.602849 112.521467 83.562158 1.922009647 0.033888 95 49 SH18331 18331 YML094W_13_82275_82849_INTRON_17_99 intron/exon 27.121259 101.073815 27.121259 74.952556 51.0369075 1.707884351 -0.032563 95 50 SH690 690 Gln3 5' flank 29.083525 89.212838 59.1481815 1.771941397 -0.100068 95 51 SH10290 10290 RUF7 RUF7 61 80 30.92843 80.527418 55.727924 1.746072865 0.140702 95 52 SH15714 15714 YBR220C_2_663261_662457_INTRON_302_722 intron 26.141807 94.595181 26.141807 69.453374 47.7975905 1.679406004 -0.030278 95 53 SH11523 11523 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4501 4519 38.361113 77.141167 57.75114 1.761560562 0.494362 95 54 SH20463 20463 YGL183C spliced 35.212917 94.017465 64.615191 1.810334632 0.019417 95 55 SH3605 3605 Val1 tRNA 21 37 31.020432 82.640389 56.8304105 1.754580793 0.10461 95 56 SH20724 20724 YJL177W spliced 28.61054 82.602014 55.606277 1.745123819 -0.028268 95 57 SH21212 21212 YOR096W spliced 30.319364 79.533801 54.9265825 1.739782578 0.118933 95 58 SH20445 20445 YGL103W spliced 35.640405 88.671613 62.156009 1.793483121 0.148608 95 59 SH21626 21626 copy of SH7731 25.891172 79.950395 52.9207835 1.723626265 -0.183893 95 60 SH2197 2197 Met2 3' flank 28.135768 80.69929 54.417529 1.735738817 -0.036465 95 61 SH2025 2025 Lys3 tRNA 71 83 55.971275 100.400096 78.1856855 1.893127248 0.28142 95 62 SH853 853 Glu2 tRNA 31 43 38.885146 83.747484 61.316315 1.787576047 0.339101 95 63 SH336 336 Arg5 tRNA 16 28 28.027593 77.75057 52.8890815 1.723366025 -0.006454 95 64 SH5084 5084 snR11 snR11 21 35 226.503614 317.311371 271.9074925 2.434421175 -0.143389 95 65 SH19440 19440 YPR187W_16_911252_911795_INTRON_21_96 intron 29.057271 104.055292 29.057271 75.998021 52.527646 1.720387939 0.084352 95 66 SH7072 7072 snR62 3' 31.702206 89.648336 60.675271 1.783011725 0.00779 95 67 SH11998 11998 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6876 6892 59.517871 119.53988 89.5288755 1.95196313 -0.001397 95 68 SH3410 3410 Thr4 3' flank 27.708855 72.604879 50.156867 1.700330401 0.039252 95 69 SH13993 13993 MT COB intronic 27.801397 98.590392 27.801397 71.788995 49.795196 1.697187446 0.056518 95 70 SH14074 14074 MT COB Cytbi4 27.59508 101.77043 27.59508 75.17535 51.385215 1.710838178 -0.002056 95 71 SH2661 2661 Pro4 5' flank 27.158616 70.05032 48.604468 1.686676194 0.034996 95 72 SH19941 19941 YBL027W spliced 26.496427 85.525136 56.0107815 1.748271632 -0.207726 95 73 SH3823 3823 RNaseP RNaseP 81 95 37.02863 88.207039 62.6178345 1.796698044 0.191935 95 74 SH15514 15514 YBR048W_2_332790_333771_INTRON_46_556 intron 27.600165 112.514019 27.600165 85.913854 56.7570095 1.754019505 -0.13537 95 75 SH11154 11154 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2656 2671 142.531878 175.313017 158.9224475 2.201185245 0.278687 95 76 SH14087 14087 MT COB Cytbi4 28.35017 113.936924 28.35017 86.586754 57.468462 1.759429574 -0.092664 95 77 SH5866 5866 snR35 snR35 516 531 34.982128 88.108815 61.5454715 1.789196103 0.145603 95 78 SH10466 10466 RUF8 RUF8 256 278 27.854024 72.574229 50.2141265 1.700825912 0.049721 95 79 SH8012 8012 snoRNA cluster 2 intergenic 25.520994 95.176338 25.520994 70.655344 48.088169 1.682038241 -0.093028 95 80 SH6248 6248 snR42 snR42 21 37 46.09115 87.23063 66.66089 1.823871108 0.397431 95 81 SH14459 14459 MT 21S rRNA 21S rRNA3 26.825941 98.873407 26.825941 73.047466 49.9367035 1.69841987 -0.028942 95 82 SH8980 8980 snR17a / U3a U3a 186 202 29.877909 84.155106 57.0165075 1.756000611 0.026286 95 83 SH15154 15154 MT tRNA Thr1 reverse complement 3' 29.754276 106.274125 29.754276 77.519849 53.6370625 1.729464985 0.109164 95 84 SH15983 15983 YDL136W_4_217600_218367_INTRON_4_408 intron 26.703554 104.642433 26.703554 78.938879 52.8212165 1.722808399 -0.112821 95 85 SH5612 5612 snR34 5' 30.463642 100.411332 65.437487 1.815826613 -0.238021 95 86 SH324 324 Arg5 5' flank 25.998803 67.836915 46.917859 1.671338186 -0.018244 95 87 SH1350 1350 Ile3 131-133 + 3' flank 131 150 28.736093 75.784124 52.2601085 1.718170307 0.066232 95 88 SH17164 17164 YHR016C_8_138446_136872_INTRON_48_215 intron 34.001066 124.58039 34.001066 91.579324 62.790195 1.797891832 0.042839 95 89 SH18706 18706 YNL130C_14_381156_379555_INTRON_30_470 intron 32.089076 105.082193 32.089076 73.993117 53.0410965 1.724612494 0.298118 95 90 SH5878 5878 snR35 3' 29.809064 86.778562 58.293813 1.765622463 -0.024291 95 91 SH20099 20099 YDL029W spliced 27.405661 74.576031 50.990846 1.707492217 -0.00764 95 92 SH10503 10503 RUF8 RUF8 441 457 34.537018 86.177071 60.3570445 1.780727966 0.179674 95 93 SH16598 16598 YFL034C-A_6_64931_64242_INTRON_13_333 intron 29.786745 104.472439 29.786745 75.685694 52.7362195 1.722108993 0.135193 95 94 SH16929 16929 YGR001C_7_498029_497128_INTRON_36_97 intron/exon 29.756946 127.588864 29.756946 98.831918 64.294432 1.808173364 -0.227834 95 95 SH14146 14146 MT COB intronic 29.714833 128.440723 29.714833 99.72589 64.7203615 1.811040934 -0.245384 95 96 SH2443 2443 Phe5 5' flank - tRNA3 3 29.431475 85.965189 57.698332 1.761163258 -0.026785 95 97 SH1609 1609 Leu5 5' flank 28.814236 85.893637 57.3539365 1.758563231 -0.054024 95 98 SH13838 13838 MT COB Cytbi2 28.305772 105.803984 28.305772 78.498212 53.401992 1.727557457 0.002573 95 99 SH3374 3374 Thr4 5' flank 26.135593 74.6658 50.4006965 1.702436538 -0.100177 95 100 SH9413 9413 RUF2 5' 28.691936 85.175216 56.933576 1.755368463 -0.053629 95 101 SH145 145 Arg1 3' flank 28.745924 81.192355 54.9691395 1.740118938 -0.00214 95 102 SH858 858 Glu2 tRNA 56 68 30.639362 85.568051 58.1037065 1.764203837 0.034211 95 103 SH16956 16956 YGR029W_7_543547_544199_INTRON_87_169 intron 30.326261 114.248207 30.326261 84.921946 57.6241035 1.760604182 0.032189 95 104 SH3053 3053 Ser3 5' flank 27.989875 72.391787 50.190831 1.700624386 0.061506 96 2 SH18755 18755 YNL162W_14_331319_332151_INTRON_5_516 intron 156.362437 335.679213 156.362437 180.316776 168.3396065 2.226186308 0.341386 96 3 SH18933 18933 YOL121C_15_92849_92025_INTRON_21_410 intron 27.250961 101.714104 27.250961 75.463143 51.357052 1.710600086 -0.029889 96 4 SH1554 1554 Leu4 5' flank 29.371042 72.684162 51.027602 1.70780516 0.149227 96 5 SH14735 14735 MT tRNA cys; tRNA his tRNA his / 3' 28.779226 104.32658 28.779226 76.547354 52.66329 1.721507987 0.059025 96 6 SH7799 7799 snoRNA cluster1 snR75 28.294834 108.672726 28.294834 81.377892 54.836363 1.739068643 -0.034227 96 7 SH19479 19479 ADH1 41.96419 102.337205 72.1506975 1.858240534 -0.008388 96 8 SH17099 17099 YHL001W_8_104270_105084_INTRON_130_527 intron 28.965033 103.547946 28.965033 75.582913 52.273973 1.718285509 0.083845 96 9 SH14531 14531 MT 21S rRNA 21S rRNA3 27.229742 103.71986 27.229742 77.490118 52.35993 1.718999057 -0.057509 96 10 SH19492 19492 YPT1 30.842436 93.477414 62.159925 1.793510482 -0.093712 96 11 SH8512 8512 snR19 / U1 RNA U1 56 77 24.691829 66.204218 45.4480235 1.657515001 -0.090654 96 12 SH19594 19594 AEP2/ATP13 2.1 28.339341 89.486496 58.9129185 1.770210538 -0.139499 96 13 SH20623 20623 YHR101C spliced 35.957245 93.48777 64.7225075 1.811055335 0.048769 96 14 SH18639 18639 YNL096C_14_444312_443395_INTRON_145_489 3' exon 26.624239 96.326646 26.624239 70.702407 48.663323 1.687201762 -0.012166 96 15 SH7177 7177 snR64 5' 26.691141 67.335608 47.0133745 1.672221425 0.039486 96 16 SH19236 19236 YPL090C_16_378390_377286_INTRON_7_400 intron 27.529584 106.244969 27.529584 79.715385 53.6224845 1.729346932 -0.065221 96 17 SH13493 13493 MT COX1 Exon 5g 28.558722 102.500346 28.558722 74.941624 51.750173 1.713911806 0.065759 96 18 SH3392 3392 Thr4 tRNA 46 62 31.633088 76.240378 53.936733 1.731884637 0.241197 96 19 SH1598 1598 Leu4 3' flank 29.922927 98.641188 64.2820575 1.808089769 -0.217401 96 20 SH14309 14309 MT VAR1 includes 5’ processing site VAR1 25.628166 100.285319 25.628166 75.657153 50.6426595 1.704516505 -0.150592 96 21 SH202 202 Arg2 3' flank 32.811406 97.044454 64.92793 1.812431557 -0.105307 96 22 SH12399 12399 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.47225 123.444444 32.47225 91.972194 62.222222 1.793945516 -0.005176 96 23 SH330 330 Arg5 5' flank - tRNA3 5' flank 3 29.426217 80.404436 54.9153265 1.73969357 0.051695 96 24 SH3663 3663 Val2 tRNA 56 68 37.917084 100.011845 68.9644645 1.838625368 -0.045217 96 25 SH5669 5669 snR34 snR34 266 283 30.823948 90.802761 60.8133545 1.78399896 -0.049606 96 26 SH21650 21650 copy of SH8770 102.75492 145.606987 124.1809535 2.09405499 0.214895 96 27 SH8984 8984 snR17a / U3a U3a 206 222 33.154214 86.151526 59.65287 1.775631343 0.129278 96 28 SH131 131 Arg1 31-43 31 43 47.193064 101.041084 74.117074 1.869918266 0.118114 96 29 SH528 528 Cys1 5' flank 26.892007 83.071031 54.981519 1.740216734 -0.150655 96 30 SH8037 8037 snoRNA cluster 2 snR55/intergenic 27.386295 97.818102 27.386295 71.431807 49.409051 1.693806512 0.032333 96 31 SH2278 2278 Phe2 5' flank - tRNA4 4 29.842468 80.974265 55.4083665 1.743575347 0.07109 96 32 SH19923 19923 YAL030W spliced 29.673899 98.419436 64.0466675 1.806496537 -0.225104 96 33 SH19590 19590 AEP2/ATP13 2.1 27.294693 66.706183 47.000438 1.672101905 0.09156 96 34 SH9602 9602 RUF3 RUF3 396 413 268.926431 315.637125 292.281778 2.465801741 0.081043 96 35 SH13457 13457 MT COX1 intronic 27.771947 100.313197 27.771947 73.54125 50.6565985 1.704636024 0.031336 96 36 SH13963 13963 MT COB Cytbi3 25.353543 97.931523 25.353543 73.57798 49.4657615 1.694304699 -0.1446 96 37 SH16613 16613 YFL039C_6_54695_53260_INTRON_11_318 5' exon 27.167692 103.378291 27.167692 77.210599 52.1891455 1.717580186 -0.058189 96 38 SH8906 8906 LSR1 / U2 RNA 1171-1175 + 3' 1171 28.645267 77.540342 53.0928045 1.725035667 0.03733 96 39 SH9542 9542 RUF3 RUF3 96 112 27.987619 85.237981 56.6128 1.752914635 -0.101196 96 40 SH20260 20260 YDR397C spliced 41.456865 98.697184 70.0770245 1.845575653 0.055509 96 41 SH18227 18227 YML026C_13_223828_222987_INTRON_48_448 intron 28.376491 113.395856 28.376491 86.019365 57.197928 1.757380297 -0.084333 96 42 SH2161 2161 Met2 5' flank 31.232586 88.037887 59.6352365 1.775502946 0.015857 96 43 SH549 549 Cys1 tRNA 46 62 34.068657 85.947474 60.0080655 1.778209626 0.169362 96 44 SH847 847 Glu2 tRNA 1 17 1453.607977 1163.374018 1308.490998 3.116770739 0.18655 96 45 SH7473 7473 snR71 5' - 1 -19 1 27.067193 75.165515 51.116354 1.708559869 -0.039128 96 46 SH4208 4208 telomerase RNA telomerase 76 93 31.515219 74.395189 52.955204 1.723908645 0.258693 96 47 SH19392 19392 YPR043W_16_654161_654842_INTRON_3_405 intron 29.257563 102.036084 29.257563 73.778521 51.518042 1.711959349 0.126971 96 48 SH10126 10126 RUF6 RUF6 476 491 31.728817 80.498096 56.1134565 1.749067021 0.175462 96 49 SH8401 8401 snoRNA cluster 5 snR190 27.015964 105.55936 27.015964 79.543396 53.27968 1.726561608 -0.098544 96 50 SH5119 5119 snR11 snR11 196 210 33.580792 81.570233 57.5755125 1.760237812 0.230921 96 51 SH4398 4398 telomerase RNA telomerase 1026 1043 30.952287 89.230323 60.091305 1.778811636 -0.017021 96 52 SH2550 2550 Pro2 5' flank - tRNA2 2 30.724116 86.7835 58.753808 1.76903602 0.016089 96 53 SH13675 13675 MT ATP6 3' 30.58728 126.347967 30.58728 96.760687 63.6739835 1.803962021 -0.159355 96 54 SH6917 6917 snR58 5' 33.027239 90.906792 61.9670155 1.79216058 0.032969 96 55 SH3927 3927 RNase MRP RNaseMRP 51 73 26.649759 80.241413 53.445586 1.727911843 -0.133006 96 56 SH19984 19984 YBL091C-A spliced 29.002454 81.120517 55.0614855 1.740847924 0.015486 96 57 SH13755 13755 MT COB exon1/intron 35.592895 127.285201 35.592895 92.692306 64.1426005 1.807146563 0.057416 96 58 SH11737 11737 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5571 5591 26.414173 80.358431 53.386302 1.727429839 -0.151196 96 59 SH15495 15495 YBL092W_2_45639_46364_INTRON_1_333 intron 31.02461 116.325672 31.02461 86.301062 58.662836 1.768363055 0.037739 96 60 SH9342 9342 RUF1 RUF1 286 302 31.041165 82.383675 56.71242 1.75367818 0.110317 96 61 SH3114 3114 Ser4 5' flank 28.534582 88.997583 58.7660825 1.76912674 -0.121834 96 62 SH20170 20170 YDL137W spliced 55.370767 108.707326 82.0390465 1.914020604 0.11392 96 63 SH4621 4621 snR3 snR3 21 37 145.749929 251.17011 198.4600195 2.29767303 -0.300508 96 64 SH9499 9499 RUF2 3' 34.299607 79.466087 56.882847 1.754981325 0.299697 96 65 SH10337 10337 RUF7 RUF7 296 315 27.313281 87.290644 57.3019625 1.758169496 -0.170974 96 66 SH16950 16950 YGR027C_7_534779_534126_INTRON_1_312 intron/exon 29.594456 118.673568 29.594456 90.079112 59.836784 1.776968244 -0.091708 96 67 SH15386 15386 YBL040C_2_142830_142074_INTRON_23_119 5' exon 34.295034 118.938836 34.295034 85.643802 59.969418 1.777929834 0.183702 96 68 SH21617 21617 copy of SH7318 29.673775 79.19226 54.4330175 1.73586241 0.082689 96 69 SH5375 5375 snR31 5' 29.500476 82.721532 56.111004 1.74904804 0.027999 96 70 SH17734 17734 YKL156W_11_158616_159214_INTRON_4_353 intron 28.941967 119.082674 28.941967 91.140707 60.041337 1.778450355 -0.139672 96 71 SH6829 6829 snR52 snR52 51 70 25.990991 69.930997 47.960994 1.680888175 -0.047997 96 72 SH19905 19905 YAL001C spliced 30.798377 88.261892 59.5301345 1.774736864 -0.006812 96 73 SH11388 11388 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3826 3845 32409.49812 18825.15085 25617.32449 4.408533769 -0.159656 96 74 SH12056 12056 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7166 7182 29.749663 80.258538 55.0041005 1.740395067 0.074111 96 75 SH7047 7047 snR62 snR62 26 45 28.355506 71.369368 49.862437 1.697773501 0.100149 96 76 SH10533 10533 RUF8 RUF8 591 612 26.666389 75.513653 51.090021 1.708336081 -0.072292 96 77 SH13969 13969 MT COB Cytbi3 26.628748 91.48051 26.628748 65.851762 46.240255 1.66502022 0.056361 96 78 SH21908 21908 copy of SH19403 30.779468 90.871926 60.825697 1.784087094 -0.052716 96 79 SH11823 11823 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6001 6016 32.903145 99.167409 66.035277 1.819776004 -0.146864 96 80 SH4007 4007 SRP RNA 5' 26.588142 72.006712 49.297427 1.692824253 -0.032319 96 81 SH15374 15374 YBL027W_2_168385_169338_INTRON_3_386 intron 27.301371 111.049103 27.301371 84.747732 56.0245515 1.748378389 -0.142196 96 82 SH6548 6548 snR46 3' 27.65429 75.470614 51.562452 1.712333562 -0.001919 96 83 SH17982 17982 YLR275W_12_694378_694800_INTRON_6_95 5' exon 29.524134 109.593299 29.524134 81.069165 55.2966495 1.742698818 0.049711 96 84 SH10636 10636 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 66 83 26.358136 89.67222 58.015178 1.763541629 -0.264994 96 85 SH15460 15460 YBL087C_2_60732_59815_INTRON_43_546 intron 32.225098 127.481823 32.225098 96.256725 64.2409115 1.807811694 -0.104168 96 86 SH15874 15874 YDL082W_4_308423_309387_INTRON_5_369 5' exon 47.771971 144.899953 47.771971 98.127982 72.9499765 1.863025156 0.187901 96 87 SH18345 18345 YML124C_13_23684_22049_INTRON_26_323 intron 28.286014 98.052074 28.286014 70.76606 49.526037 1.694833578 0.10357 96 88 SH581 581 Gln1 5' flank 29.067508 96.376504 62.722006 1.79741994 -0.220289 96 89 SH10314 10314 RUF7 RUF7 181 202 27.284671 74.488534 50.8866025 1.706603456 -0.015035 96 90 SH10322 10322 RUF7 RUF7 221 238 29.717065 89.628238 59.6726515 1.775775336 -0.078412 96 91 SH10027 10027 RUF6 5' 34.336823 90.815587 62.576205 1.796409221 0.068244 96 92 SH14975 14975 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.223166 94.829693 27.223166 68.606527 47.9148465 1.680470101 0.059552 96 93 SH13883 13883 MT COB intronic 27.185844 97.860945 27.185844 71.675101 49.4304725 1.693994762 0.014923 96 94 SH11316 11316 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3466 3483 7430.616229 5070.479464 6250.547847 3.795918084 -0.006791 96 95 SH16577 16577 YER179W_5_548416_549512_INTRON_133_224 intron 30.537185 106.962908 30.537185 77.425723 53.981454 1.732244578 0.159317 96 96 SH21892 21892 copy of SH18802 30.122317 93.407036 61.7646765 1.790740171 -0.124167 96 97 SH5316 5316 snR30 snR30 431 445 30.485072 75.356345 52.9207085 1.72362565 0.183222 96 98 SH10768 10768 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 726 741 45.616387 106.209478 75.9129325 1.880315768 -0.012194 96 99 SH3054 3054 Ser3 5' flank 32.496343 89.70277 61.0995565 1.786038058 0.039965 96 100 SH20124 20124 YDL079C spliced 28.740132 82.35039 55.545261 1.744647012 -0.016699 96 101 SH13700 13700 MT tRNAGlu (and 5' processing site for COB) 5' 26.902719 95.784483 26.902719 69.881764 48.3922415 1.684775739 0.019076 96 102 SH20198 20198 YDR005C spliced 26.941722 70.33194 48.636831 1.68696527 0.015704 96 103 SH8295 8295 snoRNA cluster4 intergenic 26.884361 98.466905 26.884361 72.582544 49.7334525 1.696648609 -0.018626 96 104 SH1009 1009 Gly2 tRNA 36 48 151.428679 275.537077 213.482878 2.329363049 -0.408555 97 2 SH19852 19852 Negative Control 33.726977 77.75447 55.7407235 1.746172601 0.310847 97 3 SH4616 4616 snR3 5' - 15 15 31.258331 92.556946 61.9076385 1.791744238 -0.060476 97 4 SH14372 14372 MT ORF9 and ORF10 (hypothetical) ORF10 30.809322 111.965801 30.809322 82.156479 56.4829005 1.75191699 0.104555 97 5 SH15658 15658 YBR189W_2_604466_605466_INTRON_8_420 intron 38.948261 136.107854 38.948261 98.159593 68.553927 1.836032338 0.015418 97 6 SH14655 14655 MT 21S rRNA 21S rRNA4 31.794271 124.555865 31.794271 93.761594 62.7779325 1.797807009 -0.062339 97 7 SH12363 12363 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.828764 103.02239 27.828764 76.193626 52.011195 1.716096832 0.000385 97 8 SH8392 8392 snoRNA cluster 5 snR190 33.044964 114.905497 33.044964 82.860533 57.9527485 1.763074038 0.185113 97 9 SH15197 15197 MT COX3 cox3 26.829433 99.598216 26.829433 73.768783 50.299108 1.701560283 -0.03812 97 10 SH12858 12858 MT COX1 COX1ai1 27.077492 94.307854 27.077492 68.230362 47.653927 1.678098695 0.054495 97 11 SH10712 10712 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 446 462 29.309309 72.752492 51.0309005 1.707833232 0.144322 97 12 SH6286 6286 snR42 snR42 211 228 26.602041 65.416377 46.009209 1.662844767 0.060794 97 13 SH13518 13518 MT COX1 intronic 25.983357 93.040136 25.983357 68.056779 47.020068 1.672283253 -0.022494 97 14 SH10283 10283 RUF7 RUF7 26 42 36.471251 92.310243 64.390747 1.808823463 0.086641 97 15 SH13483 13483 MT COX1 intronic 27.679037 117.32476 27.679037 90.645723 59.16238 1.772045637 -0.190964 97 16 SH9333 9333 RUF1 RUF1 241 260 27.039286 70.024186 48.531736 1.686025826 0.026874 97 17 SH3199 3199 Ser5 3' flank 26.391105 77.403374 51.8972395 1.715144258 -0.115994 97 18 SH40 40 Ala1 3' flank 38.168597 93.324013 65.746305 1.81787135 0.10298 97 19 SH9954 9954 RUF5-1 RUF5-1 576 592 29.28607 85.993272 57.639671 1.760721493 -0.033919 97 20 SH15996 15996 YDL137W_4_216158_217074_INTRON_1_332 5' exon 31.831707 125.592504 31.831707 94.760797 63.296252 1.801377995 -0.08286 97 21 SH13644 13644 MT ATP6 ATP6 27.286361 91.82987 27.286361 65.543509 46.414935 1.666657747 0.107845 97 22 SH13307 13307 MT COX1 COX1-ai5a 27.174432 100.710739 27.174432 74.536307 50.8553695 1.706336814 -0.023447 97 23 SH19429 19429 YPR132W_16_794960_795762_INTRON_66_430 intron 29.024151 109.094923 29.024151 81.070772 55.0474615 1.740737296 0.01751 97 24 SH6915 6915 snR58 5' 28.475886 84.831726 56.653806 1.753229091 -0.063825 97 25 SH8488 8488 snR19 / U1 RNA 5' 28.244822 83.174093 55.7094575 1.745928929 -0.059419 97 26 SH2256 2256 Phe1 3' flank 28.297106 75.815698 52.056402 1.716474148 0.036809 97 27 SH7331 7331 snR66 3' 25.990738 68.700525 47.3456315 1.675279914 -0.030981 97 28 SH6056 6056 snR37 snR37 196 213 28.20122 86.846116 57.523668 1.759846571 -0.105584 97 29 SH1219 1219 Ile1 tRNA 56 68 33.11303 91.279684 62.196357 1.793764948 0.026874 97 30 SH4165 4165 SRP RNA 3' 29.162441 82.843696 56.0030685 1.748211823 0.004806 97 31 SH20687 20687 YIL133C spliced 29.297147 78.658787 53.977967 1.732216523 0.065389 97 32 SH4149 4149 SRP RNA SRP RNA 636 652 35.864409 98.889025 67.376717 1.828509846 -0.067721 97 33 SH21020 21020 YMR079W spliced 28.912356 84.431456 56.671906 1.753367819 -0.030429 97 34 SH20401 20401 YFR024C-A spliced 31.792993 88.148902 59.9709475 1.77794091 0.03771 97 35 SH4643 4643 snR3 snR3 131 145 29.957123 87.043471 58.500297 1.767158071 -0.022375 97 36 SH14148 14148 MT COB intronic 27.370057 101.451432 27.370057 75.081375 51.225716 1.709488037 -0.016624 97 37 SH1827 1827 Leu8 3' flank 28.849194 74.126627 51.4879105 1.711705267 0.095774 97 38 SH21162 21162 YNL301C spliced 34.679553 88.88207 61.7808115 1.790853609 0.120434 97 39 SH18609 18609 YNL069C_14_494998_493953_INTRON_29_477 intron 38.803659 131.718531 38.803659 93.914872 66.3592655 1.82190157 0.103539 97 40 SH1634 1634 Leu5 tRNA-exon/intron 36 54 28.168073 85.884506 57.0262895 1.756075114 -0.096652 97 41 SH2434 2434 Phe5 5' flank 26.70127 76.986008 51.843639 1.714695478 -0.088305 97 42 SH16260 16260 YDR424C_4_1319830_1319376_INTRON_26_121 intron 28.454903 104.269459 28.454903 76.814556 52.6347295 1.721272395 0.034182 97 43 SH13975 13975 MT COB cytbi3/intron 29.907613 108.053533 29.907613 79.14592 54.5267665 1.736609744 0.098065 97 44 SH17393 17393 YIL069C_9_232366_231550_INTRON_4_412 intron 27.53322 106.214519 27.53322 79.681299 53.6072595 1.729223606 -0.064544 97 45 SH1344 1344 Ile3 tRNA 101 113 34.45266 95.891071 65.1718655 1.814060153 -0.039308 97 46 SH5539 5539 snR33 5' - 3 -19 3 27.261208 83.852484 55.556846 1.744737583 -0.134337 97 47 SH9282 9282 RUF1 5' - 5 -14 5 27.072037 81.64794 54.3599885 1.735279356 -0.120783 97 48 SH21691 21691 copy of SH10451 31.450832 86.597313 59.0240725 1.771029171 0.0507 97 49 SH18030 18030 YLR316C_12_766358_765266_INTRON_230_285 exon/intron 29.079214 103.209575 29.079214 75.130361 52.1047875 1.716877629 0.097271 97 50 SH17036 17036 YGR183C_7_859471_859058_INTRON_4_216 intron 31.339197 121.134185 31.339197 90.794988 61.0670925 1.785807243 -0.027285 97 51 SH12454 12454 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.344554 118.980541 31.344554 88.635987 59.9902705 1.77808082 0.010173 97 52 SH1777 1777 Leu8 5' flank 30.238997 81.369408 55.8042025 1.746666906 0.091087 97 53 SH3002 3002 Ser2 5' flank 29.124474 79.227989 54.1762315 1.733808792 0.047032 97 54 SH7176 7176 snR64 5' 31.577938 77.338719 54.4583285 1.736064307 0.223588 97 55 SH20181 20181 YDL191W spliced 31.847458 98.123159 64.9853085 1.812815185 -0.153241 97 56 SH17976 17976 YLR211C_12_564531_563792_INTRON_19_77 exon/intron 29.598663 110.278171 29.598663 81.679508 55.6390855 1.745379983 0.046951 97 57 SH17326 17326 YIL004C_9_348502_347943_INTRON_12_142 intron 29.460169 102.162557 29.460169 73.702388 51.5812785 1.712492102 0.141007 97 58 SH17240 17240 YHR079C-A_8_262554_262193_INTRON_114_199 intron 31.685794 118.026478 31.685794 87.340684 59.513239 1.774613587 0.047439 97 59 SH18289 18289 YML067C_13_140214_139063_INTRON_32_124 3' exon 31.711874 122.238983 31.711874 91.527109 61.6194915 1.78971811 -0.023887 97 60 SH6534 6534 snR46 snR46 161 178 29.380115 67.118175 48.249145 1.683489622 0.227441 97 61 SH14235 14235 MT tRNA Ser 5' 31.806223 114.392951 31.806223 83.586728 57.6964755 1.761149284 0.120477 97 62 SH9818 9818 RUF4 3' 29.787373 78.857591 54.322482 1.734979605 0.094128 97 63 SH12569 12569 MT_15S MT_15S 27.83533 102.412544 27.83533 75.577214 51.706272 1.713543226 0.008962 97 64 SH20585 20585 YHR021C spliced 30.424179 79.277824 54.8510015 1.739184562 0.128663 97 65 SH2311 2311 Phe2 3' flank 27.856497 88.746527 58.301512 1.765679818 -0.15043 97 66 SH16986 16986 YGR118W_7_726968_727725_INTRON_66_385 intron 29.87975 111.195847 29.87975 82.316097 56.0979235 1.748946786 0.056987 97 67 SH1115 1115 Gly4 tRNA 51 66 29.643731 73.10357 51.3736505 1.710740427 0.160879 97 68 SH18541 18541 YMR230W_13_732413_733140_INTRON_53_462 intron 34.196246 125.320413 34.196246 92.124167 63.1602065 1.800443541 0.035686 97 69 SH7928 7928 snoRNA cluster1 snR72 26.828755 106.116997 26.828755 80.288242 53.5584985 1.728828393 -0.120977 97 70 SH2284 2284 Phe2 tRNA 16 28 48.758334 110.533214 79.645774 1.901162737 -0.03336 97 71 SH12390 12390 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.772646 123.918752 33.772646 91.146106 62.459376 1.795597641 0.046707 97 72 SH1001 1001 Gly2 5' flank - tRNA10 10 35.178343 99.83277 67.5055565 1.829339522 -0.103294 97 73 SH17729 17729 YKL156W_11_158616_159214_INTRON_4_353 intron 35.154046 124.693055 35.154046 90.539009 62.8465275 1.798281286 0.094542 97 74 SH7030 7030 snR62 5' 25.084675 76.55095 50.8178125 1.706015967 -0.203141 97 75 SH8078 8078 snoRNA cluster 2 snR61/3' 25.984994 96.999339 25.984994 72.014345 48.9996695 1.690193151 -0.076611 97 76 SH4705 4705 snR4 snR4 61 76 28.957153 81.177899 55.067526 1.740895566 0.011833 97 77 SH19438 19438 YPR187W_16_911252_911795_INTRON_21_96 5' exon 29.138002 115.43416 29.138002 87.296158 58.21708 1.765050419 -0.063965 97 78 SH17309 17309 YHR203C_8_505526_504472_INTRON_15_283 intron 31.265086 117.545071 31.265086 87.279985 59.2725355 1.772853505 0.030625 97 79 SH19680 19680 SIR1 2.4 28.945242 89.219682 59.082462 1.771458584 -0.106565 97 80 SH1964 1964 Lys2 tRNA 21 35 29.316243 80.951402 55.1338225 1.741418104 0.037852 97 81 SH10298 10298 RUF7 RUF7 101 121 29.856638 82.770958 56.313798 1.750614819 0.050012 97 82 SH3099 3099 Ser4 5' flank 29.937231 82.904189 56.42071 1.751438547 0.052108 97 83 SH21520 21520 copy of SH3381 29.28291 67.451747 48.3673285 1.6845521 0.216301 97 84 SH8446 8446 snoRNA cluster 5 snR128 46.638932 147.460141 46.638932 101.821209 74.2300705 1.870579873 0.09239 97 85 SH15891 15891 YDL082W_4_308423_309387_INTRON_5_369 intron 25.717845 92.320182 25.717845 67.602337 46.660091 1.668945581 -0.035792 97 86 SH14727 14727 MT tRNA cys; tRNA his intergenic 32.266867 123.800136 32.266867 92.533269 62.400068 1.795185063 -0.02295 97 87 SH9489 9489 RUF2 3' 28.297844 75.480595 51.8892195 1.715077138 0.041293 97 88 SH809 809 Glu1 61-72 + 3' flank 61 73 33.548484 86.466473 60.0074785 1.778205378 0.139456 97 89 SH21584 21584 copy of SH6041 27.135233 81.099694 54.1174635 1.733337433 -0.109644 97 90 SH3467 3467 Trp1 3' flank 86.434645 133.160198 109.7974215 2.040592141 0.18334 97 91 SH21128 21128 YNL130C spliced 26.939475 72.313679 49.626577 1.695714321 -0.011121 97 92 SH7131 7131 snR63 snR63 161 175 31.522202 82.696815 57.1095085 1.756708423 0.12503 97 93 SH6768 6768 snR50 snR50 16 32 603.595131 564.719757 584.157444 2.766529915 0.175787 97 94 SH1962 1962 Lys2 tRNA 11 23 38.582996 97.815938 68.199467 1.833780981 0.0149 97 95 SH13515 13515 MT COX1 intronic 26.782449 103.468377 26.782449 77.685928 52.2341885 1.717954852 -0.091243 97 96 SH8357 8357 snoRNA cluster4 3' 28.688137 101.093389 28.688137 73.405252 51.0466945 1.707967625 0.095017 97 97 SH21596 21596 copy of SH6472 27.982194 73.172886 50.57754 1.703957702 0.050679 97 98 SH2963 2963 Ser1 tRNA 46 58 27.617545 77.061606 52.3395755 1.718830196 -0.025312 97 99 SH12137 12137 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7571 7588 30.111116 81.830152 55.970634 1.747960226 0.077449 97 100 SH13835 13835 MT COB Cytbi2 30.758117 113.158173 30.758117 83.400056 57.0790865 1.756477014 0.079088 97 101 SH4569 4569 U3b (snR17b) U3b 401 417 28.950192 80.452947 54.7015695 1.737999787 0.020362 97 102 SH2452 2452 Phe5 tRNA-exon/intron 31 48 29.184851 86.28624 57.7355455 1.761443273 -0.043814 97 103 SH21312 21312 YPL241C spliced 31.840332 98.529858 65.185095 1.814148303 -0.161832 97 104 SH15380 15380 YBL027W_2_168385_169338_INTRON_3_386 intron 27.438752 107.658345 27.438752 81.219593 54.3291725 1.73503309 -0.090165 98 2 SH10064 10064 RUF6 RUF6 166 185 30.757956 104.545826 67.651891 1.83027994 -0.311741 98 3 SH15098 15098 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 27.436749 104.900337 27.436749 78.463588 52.9501685 1.723867346 -0.055738 98 4 SH20034 20034 YBR186W spliced 28.373282 81.822687 55.0979845 1.741135713 -0.034467 98 5 SH18931 18931 YOL121C_15_92849_92025_INTRON_21_410 intron 608.347096 1095.484119 608.347096 488.137023 548.2420595 2.73897235 0.41886 98 6 SH20663 20663 YIL052C spliced 42.024519 112.279063 77.151791 1.887346012 -0.195208 98 7 SH2606 2606 Pro3 5' flank 28.023785 78.897429 53.460607 1.728033885 -0.02137 98 8 SH15134 15134 MT tRNA Phe 3' 26.238328 94.196749 26.238328 68.958421 47.5983745 1.677592122 -0.016318 98 9 SH19068 19068 YOR293W_15_867094_867848_INTRON_53_489 intron 37.74589 136.658774 37.74589 99.912884 68.829387 1.837773902 -0.046898 98 10 SH20171 20171 YDL137W spliced 55.652688 100.177814 77.915251 1.891622474 0.280737 98 11 SH9543 9543 RUF3 RUF3 101 117 35.866522 104.152673 70.0095975 1.845157581 -0.17464 98 12 SH15192 15192 MT COX3 cox3 31.323436 125.064362 31.323436 94.740926 63.032181 1.799562335 -0.096192 98 13 SH21583 21583 copy of SH5872 33.332962 103.866205 68.5995835 1.836321479 -0.229779 98 14 SH6893 6893 snR56 3' 28.359579 99.08902 63.7242995 1.80430507 -0.296228 98 15 SH17914 17914 YLR061W_12_263195_263949_INTRON_13_401 intron 32.604441 174.063221 32.604441 142.45878 87.5316105 1.942164919 -0.89561 98 16 SH381 381 Asn1 5' flank - tRNA3 5' flank 3 39.529769 133.497048 86.5134085 1.937083423 -0.596824 98 17 SH6236 6236 snR42 5' 27.283112 70.734997 49.0090545 1.690276324 0.03447 98 18 SH6489 6489 snR46 5' 28.569781 81.792893 55.181337 1.741792219 -0.021099 98 19 SH10288 10288 RUF7 RUF7 51 72 26.486793 72.400274 49.4435335 1.6941095 -0.044905 98 20 SH5289 5289 snR30 snR30 296 311 31.042452 80.853995 55.9482235 1.747786301 0.139366 98 21 SH16147 16147 YDR092W_4_629869_630598_INTRON_31_298 intron 35.625595 115.595151 35.625595 80.969556 58.2975755 1.765650494 0.321469 98 22 SH6206 6206 snR40 91-97 + 3' 91 26.565307 65.005014 45.7851605 1.660724741 0.064622 98 23 SH3946 3946 RNase MRP RNaseMRP 146 163 28.604268 91.051555 59.8279115 1.776903843 -0.153867 98 24 SH6371 6371 snR43 snR43 96 113 28.262477 82.146256 55.2043665 1.74197343 -0.045792 98 25 SH6805 6805 snR52 5' 39.420415 99.406464 69.4134395 1.841443565 -0.000703 98 26 SH11879 11879 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6281 6298 149.907522 218.211591 184.0595565 2.264958371 -0.030719 98 27 SH10960 10960 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1686 1706 24670.8151 16305.95388 20488.38449 4.311507716 -0.289185 98 28 SH10405 10405 RUF8 5' 30.356917 81.474831 55.915874 1.747535118 0.097124 98 29 SH19192 19192 YPL081W_16_404945_406039_INTRON_8_508 5' exon 32.874523 121.245924 32.874523 89.371401 61.122962 1.786204392 0.061176 98 30 SH8272 8272 snoRNA cluster4 snR67 31.182719 110.440428 31.182719 80.257709 55.720214 1.746012776 0.156852 98 31 SH13060 13060 MT COX1 cox1ai2/intronic 26.850254 93.204872 26.850254 67.354618 47.102436 1.673043368 0.050661 98 32 SH15092 15092 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " orf1 / intronic 28.799481 110.618059 28.799481 82.818578 55.8090295 1.74670447 -0.018488 98 33 SH18979 18979 YOR096W_15_505793_506766_INTRON_145_545 intron 49.479364 147.036472 49.479364 98.557108 74.018236 1.869338731 0.209148 98 34 SH12130 12130 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7536 7552 26.979533 78.122862 52.5511975 1.720582617 -0.083044 98 35 SH9599 9599 RUF3 RUF3 381 400 27.351024 85.690043 56.5205335 1.752206253 -0.149843 98 36 SH12152 12152 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7646 7664 33.805106 94.468163 64.1366345 1.807106167 -0.025168 98 37 SH16885 16885 YGL189C_7_148970_148233_INTRON_1_368 intron 35.102714 127.56926 35.102714 93.466546 64.28463 1.808107149 0.028672 98 38 SH5544 5544 snR33 snR33 6 22 30.086884 74.369633 52.2282585 1.717905545 0.171646 98 39 SH11262 11262 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S/ITS2 3196 3213 32.453542 74.141835 53.2976885 1.726708374 0.317388 98 40 SH2647 2647 Pro4 5' flank 26.317005 80.530975 53.42399 1.72773632 -0.160287 98 41 SH10338 10338 RUF7 RUF7 301 320 26.923084 72.949076 49.93608 1.698414447 -0.020687 98 42 SH15032 15032 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.471237 103.818768 27.471237 77.347531 52.409384 1.719409055 -0.039028 98 43 SH17691 17691 YKL006W_11_431544_432358_INTRON_130_527 intron 27.753907 116.559668 27.753907 89.805761 58.779834 1.769228355 -0.172947 98 44 SH4605 4605 snR3 5' 32.356449 72.155408 52.2559285 1.718135569 0.338933 98 45 SH14273 14273 MT VAR1 includes 5’ processing site VAR1 29.677379 119.107335 29.677379 90.429956 60.0536675 1.778539535 -0.093976 98 46 SH14291 14291 MT VAR1 includes 5’ processing site VAR1 24.777452 102.311836 24.777452 78.534384 51.655918 1.713120084 -0.251419 98 47 SH1492 1492 Leu3 5' flank 26.650034 84.503547 55.5767905 1.744893463 -0.184803 98 48 SH2971 2971 Ser1 3' flank 30.880844 73.503896 52.19237 1.717607018 0.232446 98 49 SH21181 21181 YOL047C spliced 28.836016 79.748077 54.2920465 1.734736212 0.021726 98 50 SH7209 7209 snR64 3' 29.223861 68.012931 48.618396 1.686800627 0.204464 98 51 SH17336 17336 YIL018W_9_316766_317930_INTRON_5_404 intron 29.512017 105.107471 29.512017 76.595454 53.0537355 1.724715968 0.105771 98 52 SH2368 2368 Phe3 3' flank 27.40864 90.633386 59.021013 1.771006659 -0.203893 98 53 SH19757 19757 Negative Control 29.970678 79.817038 54.893858 1.739523755 0.09358 98 54 SH12999 12999 MT COX1 COX1ai2 27.789622 107.657096 27.789622 80.867474 54.328548 1.735028098 -0.061873 98 55 SH16076 16076 YDR025W_4_491510_492319_INTRON_46_384 intron 30.23537 120.678975 30.23537 91.443605 60.8394875 1.784185547 -0.086289 98 56 SH20083 20083 YCR097W spliced 27.803782 68.157842 47.980812 1.681067593 0.10649 98 57 SH2253 2253 Phe1 3' flank 27.671287 82.212021 54.941654 1.73990173 -0.086424 98 58 SH8862 8862 LSR1 / U2 RNA U2 951 967 29.9659 79.549718 54.757809 1.738446063 0.096638 98 59 SH505 505 Asp2 3' flank 27.594963 72.277692 49.9363275 1.6984166 0.035654 98 60 SH6503 6503 snR46 snR46 6 20 29.895822 84.163742 57.029782 1.756101711 0.026929 98 61 SH4931 4931 snR9 snR9 61 77 89.019881 181.710058 135.3649695 2.13150629 -0.335586 98 62 SH8426 8426 snoRNA cluster 5 intergenic 28.013862 99.062241 28.013862 72.048379 50.0311205 1.699240229 0.067718 98 63 SH18895 18895 YOL120C_15_94401_93394_INTRON_113_559 intron 28.357061 109.866254 28.357061 82.509193 55.433127 1.743769378 -0.04391 98 64 SH18783 18783 YNL301C_14_64561_63569_INTRON_113_544 5' exon 28.334019 107.284473 28.334019 79.950454 54.1422365 1.733536192 -0.013901 98 65 SH14030 14030 MT COB Exon4 29.128674 114.031447 29.128674 85.902773 57.5157235 1.759786587 -0.039502 98 66 SH10081 10081 RUF6 RUF6 251 270 32.116297 94.504546 63.3104215 1.801475205 -0.069753 98 67 SH18487 18487 YMR194W_13_651144_651909_INTRON_17_479 intron 27.178937 106.507427 27.178937 80.32849 53.7537135 1.730408472 -0.097045 98 68 SH7675 7675 snoRNA cluster1 snR78/intergenic 27.194866 97.934261 27.194866 71.739395 49.4671305 1.694316718 0.014701 98 69 SH3159 3159 Ser5 5' flank 26.942575 67.39531 47.1689425 1.67365614 0.056692 98 70 SH15628 15628 YBR181C_2_592732_591670_INTRON_7_358 intron 26.17419 104.173868 26.17419 78.999678 52.586934 1.720877851 -0.151477 98 71 SH11829 11829 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6031 6048 16608.92397 11013.21975 13811.07186 4.140227385 -0.185614 98 72 SH3892 3892 RNaseP 3' 35.511569 92.588798 64.0501835 1.806520378 0.05773 98 73 SH14495 14495 MT 21S rRNA 21S rRNA3 26.813392 101.498751 26.813392 75.685359 51.2493755 1.709688578 -0.063885 98 74 SH1686 1686 Leu6 5' flank - tRNA 11 11 47.074377 107.114585 77.094481 1.887023289 -0.00216 98 75 SH20075 20075 YCR031C spliced 39.193371 101.322377 70.257874 1.846695004 -0.044831 98 76 SH20754 20754 YJR021C spliced 28.709773 84.481798 56.5957855 1.752784092 -0.044274 98 77 SH4506 4506 U3b (snR17b) U3b 86 103 31.30027 82.821167 57.0607185 1.756337236 0.113249 98 78 SH18831 18831 YNL302C_14_62942_61957_INTRON_21_571 intron 28.978156 94.398658 28.978156 66.420502 47.699329 1.67851227 0.210938 98 79 SH11387 11387 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3821 3841 15099.39185 12669.60238 13884.49712 4.142530155 -0.531403 98 80 SH17047 17047 YGR214W_7_920570_921783_INTRON_91_545 intron 29.24708 107.422237 29.24708 79.175157 54.2111185 1.734088368 0.055615 98 81 SH9523 9523 RUF3 RUF3 1 18 29.796009 92.889001 61.342505 1.787761507 -0.130142 98 82 SH2834 2834 Pro7 5' flank 29.906048 92.347564 61.126806 1.786231704 -0.116165 98 83 SH3569 3569 Tyr2 3' flank 26.982609 79.368874 53.1757415 1.725713555 -0.098672 98 84 SH17750 17750 YKL157W_11_154993_158183_INTRON_282_664 intron 30.802024 116.150025 30.802024 86.348001 58.5750125 1.76771239 0.027261 98 85 SH1563 1563 Leu4 5' flank - tRNA3 3 26.104683 81.290978 53.6978305 1.72995674 -0.184954 98 86 SH18365 18365 YMR079W_13_424988_426058_INTRON_10_165 exon/intron 28.410335 103.793005 28.410335 76.38267 52.3965025 1.719302299 0.036874 98 87 SH20593 20593 YHR039C-A spliced 33.075775 90.296881 61.686328 1.790188919 0.047894 98 88 SH12199 12199 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7881 7899 26.528841 76.447146 51.4879935 1.711705968 -0.094041 98 89 SH16380 16380 YER007C-A_5_166884_166236_INTRON_12_114 exon/intron 26.705151 100.252925 26.705151 74.547774 50.6264625 1.704377582 -0.057142 98 90 SH14098 14098 MT COB Cytbi4 28.937388 153.763646 28.937388 125.826258 77.381823 1.888638957 -0.74119 98 91 SH13013 13013 MT COX1 COX1ai2 38.090086 198.780569 38.090086 161.690483 99.8902845 1.99952325 -1.009897 98 92 SH647 647 Gln2 tRNA 21 38 28.852684 110.507703 69.6801935 1.843109348 -0.479018 98 93 SH9479 9479 RUF2 RUF2 236 254 28.949149 129.294106 79.1216275 1.898295212 -0.796933 98 94 SH11508 11508 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4426 4444 2391.225779 1841.216989 2116.221384 3.325561099 0.11971 98 95 SH10733 10733 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 551 568 28.98105 76.162966 52.572008 1.720754565 0.077232 98 96 SH12833 12833 MT COX1 COX1ai1 26.373855 104.988617 26.373855 79.614762 52.9943085 1.72422923 -0.144765 98 97 SH18765 18765 YNL246W_14_185459_186348_INTRON_33_127 5' exon 41.442903 144.618443 41.442903 104.17554 72.8092215 1.862186387 -0.055213 98 98 SH15901 15901 YDL083C_4_307788_306925_INTRON_25_456 intron 29.966446 110.720663 29.966446 81.754217 55.8603315 1.747103509 0.069304 98 99 SH16890 16890 YGL189C_7_148970_148233_INTRON_1_368 3' exon 30.120871 121.972644 30.120871 92.851773 61.486322 1.788778515 -0.115008 98 100 SH19318 19318 YPL198W_16_173151_174701_INTRON_12_420 intron 28.076939 103.663084 28.076939 76.586145 52.331542 1.718763532 0.011969 98 101 SH16501 16501 YER117W_5_396765_397649_INTRON_43_513 intron 32.54342 136.233407 32.54342 104.689987 68.6167035 1.83642985 -0.26631 98 102 SH3921 3921 RNase MRP RNaseMRP 21 38 28.298431 80.347807 54.323119 1.734984697 -0.021233 98 103 SH4113 4113 SRP RNA SRP RNA 456 468 31.154294 89.62083 60.387562 1.780947496 -0.01507 98 104 SH12546 12546 MT_ORF6 + ORF7 (hypothetical) 3' 27.130211 100.371909 27.130211 74.241698 50.6859545 1.704887629 -0.022783 99 2 SH15525 15525 YBR048W_2_332790_333771_INTRON_46_556 intron 27.715903 110.530206 27.715903 83.814303 55.765103 1.746362509 -0.102714 99 3 SH21494 21494 copy of SH2287 28.085834 81.06693 54.576382 1.737004742 -0.044363 99 4 SH14202 14202 MT COB 3' 23.977111 90.970686 23.977111 67.993575 45.985343 1.66261943 -0.172658 99 5 SH7923 7923 snoRNA cluster1 snR72 30.760711 116.584406 30.760711 86.823695 58.792203 1.769319734 0.016966 99 6 SH19351 19351 YPL249C-A_16_76239_75699_INTRON_17_254 intron 30.832352 108.701789 30.832352 78.869437 54.8508945 1.739183714 0.158944 99 7 SH9610 9610 RUF3 3' 28.811086 73.122767 50.9669265 1.707288445 0.106935 99 8 SH17395 17395 YIL069C_9_232366_231550_INTRON_4_412 intron 31.079153 122.107199 31.079153 92.028046 61.5535995 1.789253454 -0.059305 99 9 SH4245 4245 telomerase RNA telomerase 261 277 30.775446 90.037568 60.406507 1.781083723 -0.038622 99 10 SH10147 10147 RUF6 RUF6 581 598 32.931059 90.245643 61.588351 1.789498576 0.045299 99 11 SH1901 1901 Lys1 5' flank 26.476947 72.259016 49.3679815 1.693445371 -0.043747 99 12 SH18710 18710 YNL130C_14_381156_379555_INTRON_30_470 intron 26.843599 102.952687 26.843599 77.109088 51.9763435 1.715805724 -0.079599 99 13 SH676 676 Gln3 5' flank 26.907112 72.025352 49.466232 1.69430883 -0.009602 99 14 SH6060 6060 snR37 snR37 216 235 30.061384 89.710775 59.8860795 1.777325883 -0.064417 99 15 SH7393 7393 snR68 3' 71.726806 129.31067 100.518738 2.002247027 0.039459 99 16 SH14170 14170 MT COB intronic 26.0554 93.669693 26.0554 68.614293 47.3348465 1.675180973 -0.02499 99 17 SH21013 21013 YML124C spliced 34.983611 98.560796 66.7722035 1.824595708 -0.082 99 18 SH469 469 Asp2 5' flank 30.52275 88.616377 59.5695635 1.775024418 -0.025044 99 19 SH19415 19415 YPR132W_16_794960_795762_INTRON_66_430 5' exon 32.915367 113.120974 32.915367 81.205607 57.060487 1.756335474 0.211063 99 20 SH6593 6593 snR47 snR47 71 89 30.711712 92.332113 61.5219125 1.789029828 -0.080326 99 21 SH21131 21131 YNL130C spliced 35.21536 91.005615 63.1104875 1.800101535 0.085594 99 22 SH10789 10789 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 831 851 30.73023 91.385082 61.057656 1.785740128 -0.06357 99 23 SH885 885 Glu3 5' flank 39.718538 92.096016 65.907277 1.818933369 0.163051 99 24 SH4474 4474 U3b (snR17b) 5' 30.509302 87.062128 58.785715 1.769271805 0.001739 99 25 SH994 994 Gly2 5' flank 26.032491 77.346431 51.689461 1.713402004 -0.141636 99 26 SH6348 6348 snR43 5' 28.354726 80.536548 54.445637 1.735963083 -0.019837 99 27 SH21568 21568 copy of SH5228 35.228279 89.637666 62.4329725 1.795414013 0.116663 99 28 SH19582 19582 AEP2/ATP13 0.6 28.336714 86.257525 57.2971195 1.758132789 -0.089744 99 29 SH18307 18307 YML073C_13_124172_123227_INTRON_16_430 intron 34.099825 126.939638 34.099825 93.839813 63.969819 1.805975122 -0.004197 99 30 SH1118 1118 Gly4 66-72 + 3' flank 66 26.618952 75.062173 50.8405625 1.706210347 -0.069967 99 31 SH7467 7467 snR71 5' 26.943128 77.778712 52.36092 1.719007269 -0.081168 99 32 SH21198 21198 YOL121C spliced 31.487759 84.776232 58.1319955 1.764415231 0.085149 99 33 SH20081 20081 YCR031C spliced 31.454525 90.262606 60.8585655 1.784321711 -0.013272 99 34 SH8298 8298 snoRNA cluster4 intergenic 27.17081 102.650595 27.17081 76.479785 51.8252975 1.714541804 -0.048451 99 35 SH8845 8845 LSR1 / U2 RNA U2 866 883 27.269185 76.336563 51.802874 1.714353855 -0.039765 99 36 SH17735 17735 YKL156W_11_158616_159214_INTRON_4_353 intron 29.071933 113.707779 29.071933 85.635846 57.3538895 1.758562875 -0.037298 99 37 SH14797 14797 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys 33.024147 114.329558 33.024147 82.305411 57.664779 1.760910632 0.194669 99 38 SH16996 16996 YGR118W_7_726968_727725_INTRON_66_385 intron 29.614724 126.31101 29.614724 97.696286 63.655505 1.803835968 -0.216367 99 39 SH540 540 Cys1 tRNA 1 13 78.453019 172.256639 125.354829 2.098141069 -0.383754 99 40 SH7822 7822 snoRNA cluster1 intergenic 28.941656 102.05159 28.941656 74.109934 51.525795 1.712024701 0.102028 99 41 SH8333 8333 snoRNA cluster4 snR53 43.064309 141.434044 43.064309 99.369735 71.217022 1.852583809 0.073476 99 42 SH18168 18168 YLR448W_12_1028848_1029762_INTRON_16_399 intron 61.073453 169.529232 61.073453 109.455779 85.264616 1.93076884 0.193647 99 43 SH3619 3619 Val1 3' flank 27.552507 74.653567 51.103037 1.708446711 0.001654 99 44 SH8663 8663 LSR1 / U2 RNA 5' 27.573235 77.217241 52.395238 1.719291817 -0.030357 99 45 SH4748 4748 snR5 5' 36.57229 83.200422 59.886356 1.777327888 0.299997 99 46 SH4201 4201 telomerase RNA telomerase 41 55 33.612091 90.910702 62.2613965 1.794218858 0.047885 99 47 SH5005 5005 snR10 snR10 56 68 35.295762 83.720789 59.5082755 1.774577365 0.256969 99 48 SH21172 21172 YNL312W spliced 48.994028 107.23692 78.115474 1.892737072 0.031263 99 49 SH20474 20474 YGL189C spliced 28.868571 80.971785 54.920178 1.739731936 0.008606 99 50 SH18953 18953 YOL127W_15_80347_81189_INTRON_14_427 intron 29.356763 120.920877 29.356763 92.564114 60.9604385 1.785048082 -0.144599 99 51 SH1513 1513 Leu3 tRNA-exon/intron 36 52 29.48591 86.258267 57.8720885 1.762469156 -0.029576 99 52 SH13934 13934 MT COB Cytbi3 27.244311 102.480104 27.244311 76.235793 51.740052 1.713826861 -0.040162 99 53 SH3754 3754 Val4 5' flank - tRNA10 10 120.026196 245.48205 182.754123 2.261867184 -0.496079 99 54 SH17284 17284 YHR141C_8_382752_381991_INTRON_5_445 intron 28.004777 104.63262 28.004777 77.627843 52.81631 1.722768056 -0.006407 99 55 SH8795 8795 LSR1 / U2 RNA U2 616 635 28.093051 76.247976 52.1705135 1.717425111 0.01748 99 56 SH6325 6325 snR42 3' 30.318021 78.553996 54.4360085 1.735886273 0.131261 99 57 SH4309 4309 telomerase RNA telomerase 581 599 34.920939 101.915252 68.4180955 1.835170981 -0.151829 99 58 SH15056 15056 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.786151 108.888262 27.786151 82.102111 54.944131 1.739921309 -0.077279 99 59 SH8798 8798 LSR1 / U2 RNA U2 631 647 27.762656 79.716736 53.739696 1.730295205 -0.049353 99 60 SH17778 17778 YKL180W_11_109271_110131_INTRON_310_615 intron 30.081294 98.239232 30.081294 69.157938 49.619616 1.695653399 0.244039 99 61 SH21655 21655 copy of SH8990 58.167628 124.318967 91.2432975 1.960200972 -0.098369 99 62 SH2226 2226 Phe1 tRNA 6 20 32.845158 84.594263 58.7197105 1.768783906 0.144962 99 63 SH6252 6252 snR42 snR42 41 55 95.6931 179.201643 137.4473715 2.138136439 -0.229006 99 64 SH15491 15491 YBL092W_2_45639_46364_INTRON_1_333 intron 27.890617 101.859705 27.890617 74.969088 51.4298525 1.711215279 0.020789 99 65 SH2824 2824 Pro7 5' flank 29.698157 84.940269 57.319213 1.758300219 0.003843 99 66 SH11970 11970 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6736 6756 276.143126 344.096602 310.119864 2.491529585 -0.025628 99 67 SH4662 4662 snR3 3' 28.674213 71.135014 49.9046135 1.698140696 0.12483 99 68 SH14610 14610 MT 21S rRNA Sce1 endonuc 31.21968 134.488973 31.21968 104.269293 67.7444865 1.830873955 -0.293628 99 69 SH19197 19197 YPL081W_16_404945_406039_INTRON_8_508 intron 26.801202 108.910901 26.801202 83.109699 54.9554505 1.740010772 -0.157494 99 70 SH7112 7112 snR63 snR63 66 83 28.759053 70.030531 49.394792 1.693681161 0.145535 99 71 SH18036 18036 YLR333C_12_796335_795573_INTRON_1_423 5' exon 28.274941 102.552496 28.274941 75.277555 51.776248 1.714130576 0.042464 99 72 SH6900 6900 snR56 3' 27.92199 86.235399 57.0786945 1.756474031 -0.117267 99 73 SH10417 10417 RUF8 RUF8 11 28 29.956435 84.438804 57.1976195 1.757377954 0.024593 99 74 SH13656 13656 MT ATP6 ATP6 23.554426 88.672734 23.554426 66.118308 44.836367 1.651630415 -0.177481 99 75 SH11917 11917 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6471 6487 61.249092 115.824619 88.5368555 1.947124093 0.08685 99 76 SH19408 19408 YPR098C_16_729525_728944_INTRON_48_143 intron 28.832622 116.58889 28.832622 88.756268 58.794445 1.769336295 -0.103727 99 77 SH5798 5798 snR35 snR35 176 200 31.136687 86.042939 58.589813 1.767822112 0.047199 99 78 SH4799 4799 snR5 snR5 166 183 26.432731 73.911289 50.17201 1.7004615 -0.06866 99 79 SH6871 6871 snR56 5' - 5 -14 5 30.830133 81.134125 55.982129 1.748049411 0.12483 99 80 SH7916 7916 snoRNA cluster1 intergenic/snR72 38.223286 137.479354 38.223286 100.256068 69.239677 1.840355033 -0.04363 99 81 SH3761 3761 Val4 tRNA 31 43 29.684006 79.440434 54.56222 1.736892032 0.080206 99 82 SH2133 2133 Met1 tRNA 51 65 27.559528 76.908093 52.2338105 1.717951709 -0.027278 99 83 SH17469 17469 YIL148W_9_68708_69528_INTRON_9_442 3' exon 28.050311 105.413364 28.050311 78.363053 53.206682 1.725966177 -0.012783 99 84 SH20428 20428 YGL033W spliced 32.961603 89.755631 61.358617 1.787875562 0.057148 99 85 SH13778 13778 MT COB intronic 26.132315 108.595394 26.132315 83.463079 54.797697 1.738762307 -0.209362 99 86 SH4379 4379 telomerase RNA telomerase 931 943 74.042132 134.581011 104.3115715 2.018332488 -0.001283 99 87 SH21335 21335 YPR063C spliced 28.61722 75.79789 52.207555 1.717733355 0.058239 99 88 SH4648 4648 snR3 snR3 156 172 32.938166 90.769702 61.853934 1.791367327 0.033726 99 89 SH8073 8073 snoRNA cluster 2 snR61 35.154169 140.270812 35.154169 106.116643 70.635406 1.849022446 -0.229677 99 90 SH15606 15606 YBR119W_2_479296_480281_INTRON_9_97 intron 28.391636 90.971634 28.391636 63.579998 45.985817 1.662623907 0.2135 99 91 SH7583 7583 snR189 5' - 8 -14 8 28.380457 83.461108 55.9207825 1.74757324 -0.053841 99 92 SH14501 14501 MT 21S rRNA 21S rRNA3 245.610802 591.371554 245.610802 346.760752 296.185777 2.4715642 -0.186073 99 93 SH10798 10798 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS/18S 876 897 28.722579 68.253658 48.4881185 1.685635332 0.167753 99 94 SH14908 14908 MT tRNA Tyr 5' 29.99864 106.685088 29.99864 77.686448 53.842544 1.731125572 0.122426 99 95 SH9018 9018 snR17a / U3a U3a 376 394 31.099488 97.151518 64.125503 1.807030785 -0.153346 99 96 SH1824 1824 Leu8 3' flank 28.574422 80.240706 54.407564 1.735659282 -0.00161 99 97 SH8452 8452 snoRNA cluster 5 snR128 30.482253 105.372535 30.482253 75.890282 53.1862675 1.725799514 0.175979 99 98 SH20330 20330 YER074W spliced 30.330936 85.62182 57.976378 1.76325108 0.019698 99 99 SH19684 19684 Negative Control 30.149351 96.490343 63.319847 1.801539857 -0.173207 99 100 SH16893 16893 YGL226C-A_7_73156_72747_INTRON_22_170 5' exon 27.488103 106.45659 27.488103 79.968487 53.728295 1.730203059 -0.071236 99 101 SH3172 3172 Ser5 5' flank 24.948926 69.060226 47.004576 1.67214014 -0.114212 99 102 SH1062 1062 Gly3 tRNA 46 58 40.444395 82.020395 61.232395 1.786981246 0.415021 99 103 SH9156 9156 snR7 U5 RNA U5 51 65 30.29475 77.307148 53.800949 1.730789936 0.145833 99 104 SH13439 13439 MT COX1 intronic 26.517018 94.840829 26.517018 69.323811 47.9204145 1.680520566 -0.001042 100 2 SH13557 13557 MT COX1 Exon 6 26.931055 93.829516 26.931055 67.898461 47.414758 1.675913538 0.048731 100 3 SH4086 4086 SRP RNA SRP RNA 321 335 52.398978 115.049569 83.7242735 1.922851388 -0.048233 100 4 SH14686 14686 MT 21S rRNA 21S rRNA4 28.319697 109.182078 28.319697 81.862381 55.091039 1.741080963 -0.038515 100 5 SH5031 5031 snR10 snR10 186 202 29.003444 69.470979 49.2372115 1.692293449 0.169529 100 6 SH7907 7907 snoRNA cluster1 intergenic 27.077314 94.157217 27.077314 68.079903 47.5786085 1.677411736 0.056601 100 7 SH16353 16353 YDR500C_4_1450856_1450201_INTRON_8_396 intron 27.16732 105.654817 27.16732 79.487497 53.3274085 1.726950479 -0.087313 100 8 SH20627 20627 YHR123W spliced 26.904024 79.904081 53.4040525 1.727574214 -0.110897 100 9 SH5686 5686 snR34 snR34 351 363 30.967259 84.755955 57.861607 1.762390491 0.06321 100 10 SH17728 17728 YKL156W_11_158616_159214_INTRON_4_353 intron 28.513008 119.721149 28.513008 92.208141 60.3605745 1.780753365 -0.17767 100 11 SH6309 6309 snR42 snR42 326 340 37.93253 96.965678 67.449104 1.828976185 0.018919 100 12 SH18476 18476 YMR143W_13_551927_552902_INTRON_25_568 intron 29.128808 100.037896 29.128808 71.909088 50.518948 1.703454298 0.144357 100 13 SH6165 6165 snR39B 3' 29.258531 71.979357 50.618944 1.704313081 0.151751 100 14 SH16512 16512 YER117W_5_396765_397649_INTRON_43_513 intron 29.060472 103.162878 29.060472 75.102406 52.081439 1.716682975 0.096429 100 15 SH19012 19012 YOR182C_15_678792_678190_INTRON_4_414 intron 76.156754 186.526469 76.156754 111.369715 93.7632345 1.972032581 0.377494 100 16 SH13153 13153 MT COX1 intronic 25.968537 90.987875 25.968537 66.019338 45.9939375 1.662700591 0.006419 100 17 SH18059 18059 YLR333C_12_796335_795573_INTRON_1_423 intron/exon 29.104536 113.309267 29.104536 85.204731 57.1546335 1.757051444 -0.02799 100 18 SH2039 2039 Lys3 3' flank 30.253063 86.811005 58.532034 1.767393616 -0.005081 100 19 SH13212 13212 MT COX1 COX1-ai4 28.23808 100.657292 28.23808 73.419212 50.828646 1.706108541 0.064985 100 20 SH7546 7546 snR79 71-84 +3' 71 26.190615 79.866928 53.0287715 1.724511566 -0.161068 100 21 SH12128 12128 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7526 7544 26.302095 66.964207 46.633151 1.668694762 0.016516 100 22 SH6547 6547 snR46 3' 28.65443 78.412083 53.5332565 1.728623663 0.026739 100 23 SH16078 16078 YDR025W_4_491510_492319_INTRON_46_384 intron 26.494946 99.966999 26.494946 74.472053 50.4834995 1.703149452 -0.071386 100 24 SH20119 20119 YDL075W spliced 31.006085 82.788747 56.897416 1.755092543 0.101216 100 25 SH18772 18772 YNL246W_14_185459_186348_INTRON_33_127 3' exon 40.30504 145.299232 40.30504 105.994192 73.149616 1.864212051 -0.114178 100 26 SH1619 1619 Leu5 5' flank 26.598507 72.568424 49.5834655 1.695336877 -0.039025 100 27 SH12577 12577 MT_15S MT_15S 31.132881 116.533092 31.132881 86.400211 58.766546 1.769130166 0.040626 100 28 SH16516 16516 YER117W_5_396765_397649_INTRON_43_513 intron/exon 26.495362 96.148139 26.495362 70.652777 48.5740695 1.68640449 -0.020837 100 29 SH90 90 Ala2 3' flank 29.864889 94.826122 62.3455055 1.794805151 -0.15898 100 30 SH18481 18481 YMR143W_13_551927_552902_INTRON_25_568 3' exon 38.014345 129.883106 38.014345 92.868761 65.441553 1.815853597 0.109735 100 31 SH14637 14637 MT 21S rRNA Sce1 endonuc 26.893374 102.373508 26.893374 76.480134 51.686754 1.713379259 -0.068173 100 32 SH13053 13053 MT COX1 COX1ai2 24.857994 95.212053 24.857994 71.354059 48.1060265 1.682199486 -0.153162 100 33 SH2753 2753 Pro5 3' flank 27.173836 80.963801 54.0688185 1.73294688 -0.105286 100 34 SH8708 8708 LSR1 / U2 RNA U2 181 197 29.415919 77.72846 53.5721895 1.728939396 0.084924 100 35 SH2868 2868 Pro7 3' flank 27.020019 69.443142 48.2315805 1.683331494 0.033496 100 36 SH118 118 Arg1 5' flank 29.081534 93.47449 61.278012 1.787304667 -0.172347 100 37 SH20723 20723 YJL177W spliced 38.221822 89.312038 63.76693 1.804595509 0.193762 100 38 SH14364 14364 MT ORF9 and ORF10 (hypothetical) ORF9 25.832063 107.031431 25.832063 82.199368 54.0157155 1.732520133 -0.215861 100 39 SH9343 9343 RUF1 RUF1 291 308 27.119033 79.872395 53.495714 1.728318988 -0.095502 100 40 SH12874 12874 MT COX1 COX1ai1 26.859339 102.219961 26.859339 76.360622 51.6099805 1.712733695 -0.069111 100 41 SH5714 5714 snR34 snR34 491 506 31.099624 82.918787 57.0092055 1.755944989 0.10282 100 42 SH6368 6368 snR43 snR43 81 95 31.300334 84.856033 58.0781835 1.764013025 0.075703 100 43 SH15479 15479 YBL091C-A_2_46858_46559_INTRON_35_122 3' exon 31.891262 119.190272 31.891262 88.29901 60.095136 1.778839322 0.039209 100 44 SH18195 18195 YML024W_13_225889_226697_INTRON_4_401 intron 27.492752 113.262759 27.492752 86.770007 57.1313795 1.756874711 -0.152645 100 45 SH1564 1564 Leu4 5' flank - tRNA9 9 27.308762 75.961158 51.63496 1.712943845 -0.032121 100 46 SH15867 15867 YDL079C_4_314747_312950_INTRON_413_704 intron 125.572445 304.201472 125.572445 179.629027 152.600736 2.183556628 0.086831 100 47 SH12994 12994 MT COX1 COX1ai2 26.600835 98.542783 26.600835 72.941948 49.7713915 1.696979783 -0.043783 100 48 SH574 574 Gln1 5' flank 27.808321 74.219094 51.0137075 1.707686888 0.025053 100 49 SH14275 14275 MT VAR1 includes 5’ processing site VAR1 27.05993 108.749734 27.05993 82.689804 54.874867 1.739373481 -0.13432 100 50 SH1438 1438 Leu2 5' flank 29.397347 86.767878 58.0826125 1.764046142 -0.042715 100 51 SH11616 11616 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4966 4983 1587.437673 1167.978377 1377.708025 3.139157188 0.296653 100 52 SH10889 10889 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1331 1348 71.152782 122.957106 97.054944 1.987017663 0.124128 100 53 SH5596 5596 snR34 5' 28.826466 72.690319 50.7583925 1.70550786 0.113879 100 54 SH16857 16857 YGL187C_7_150529_149708_INTRON_1_342 5' exon 27.310629 114.117307 27.310629 87.806678 57.5586535 1.760110626 -0.177059 100 55 SH4011 4011 SRP RNA 5' 30.008678 79.806927 54.9078025 1.739634063 0.096094 100 56 SH9015 9015 snR17a / U3a U3a 361 379 27.670604 73.599617 50.6351105 1.704451762 0.023534 100 57 SH3908 3908 RNase MRP 5' 32.258454 84.493348 58.375901 1.766233597 0.122685 100 58 SH4370 4370 telomerase RNA telomerase 886 903 29.867605 88.621619 59.244612 1.77264886 -0.054176 100 59 SH9037 9037 snR17a / U3a U3a 471 486 66.227465 123.262065 94.744765 1.976555223 0.046629 100 60 SH18523 18523 YMR225C_13_721402_720959_INTRON_59_205 intron 37.19047 123.052965 37.19047 86.862495 62.0264825 1.792577153 0.226855 100 61 SH5311 5311 snR30 snR30 406 422 27.62469 80.356761 53.9907255 1.732319163 -0.066746 100 62 SH6093 6093 snR37 381-386 + 3' 381 27.449332 70.816993 49.1331625 1.691374719 0.045056 100 63 SH12938 12938 MT COX1 COX1ai2 27.083844 109.863087 27.083844 83.779243 55.4315435 1.743756972 -0.145761 100 64 SH735 735 Gln4 5' flank 31.303148 83.79582 57.549484 1.760041434 0.095274 100 65 SH15324 15324 YAL003W_1_142172_143158_INTRON_81_446 intron 26.241711 94.841369 26.241711 69.599658 47.9206845 1.680523013 -0.024951 100 66 SH1456 1456 Leu2 tRNA-intron 51 65 32.299171 97.203941 64.751556 1.811250209 -0.12209 100 67 SH17638 17638 YJR145C_10_702761_701720_INTRON_15_270 5' exon 43.079214 138.179018 43.079214 96.099804 69.589509 1.842543772 0.142101 100 68 SH7625 7625 snR189 3' 27.758659 75.967364 51.8630115 1.714857731 -0.00139 100 69 SH7959 7959 snoRNA cluster 2 5' 25.977047 94.542711 25.977047 69.565664 47.7713555 1.679167564 -0.044004 100 70 SH20447 20447 YGL103W spliced 35.282394 92.666128 63.974261 1.806005278 0.050501 100 71 SH10844 10844 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1106 1126 233.58943 316.955504 275.272467 2.439762775 -0.102891 100 72 SH17484 17484 YJL024C_10_396288_395627_INTRON_23_99 exon/intron 26.470907 95.757667 26.470907 70.28676 48.3788335 1.684655393 -0.017631 100 73 SH9350 9350 RUF1 RUF1 326 344 33.136391 78.907401 56.021896 1.748357803 0.264433 100 74 SH16666 16666 YFR032C-A_6_223758_223245_INTRON_1_331 intron 28.691251 114.886447 28.691251 87.195196 57.9432235 1.763002652 -0.082855 100 75 SH14633 14633 MT 21S rRNA Sce1 endonuc 26.772258 96.169017 26.772258 70.396759 48.5845085 1.686497814 0.002668 100 76 SH12434 12434 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.787857 96.495915 26.787857 70.708058 48.7479575 1.687956424 -0.000444 100 77 SH21001 21001 YML085C spliced 36.601549 96.812503 66.707026 1.824171579 -0.007208 100 78 SH2308 2308 Phe2 3' flank 28.194924 75.68866 51.941792 1.715516929 0.031672 100 79 SH5427 5427 snR31 snR31 201 217 30.221423 76.057521 53.139472 1.725417235 0.157583 100 80 SH7182 7182 snR64 5' 92.025334 133.670481 112.8479075 2.052493511 0.244273 100 81 SH13500 13500 MT COX1 intronic 27.125352 107.423512 27.125352 81.29816 54.211756 1.734093475 -0.112777 100 82 SH21901 21901 copy of SH19201 27.403468 72.138113 49.7707905 1.696974539 0.024099 100 83 SH20126 20126 YDL082W spliced 64.229264 112.539368 88.384316 1.946375205 0.18845 100 84 SH7427 7427 snR69 snR69 36 52 39.208328 88.022636 63.615482 1.803562822 0.245073 100 85 SH12112 12112 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7446 7463 405.159471 432.382762 418.7711165 2.62197672 0.093719 100 86 SH10092 10092 RUF6 RUF6 306 325 27.26163 82.526901 54.8942655 1.739526978 -0.118354 100 87 SH20978 20978 YML056C spliced 28.470387 73.188325 50.829356 1.706114607 0.083624 100 88 SH10834 10834 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1056 1076 32.620363 81.763704 57.1920335 1.757335538 0.188418 100 89 SH8128 8128 snoRNA cluster 3; snR41 30.22551 111.614945 30.22551 82.389435 56.3074725 1.750566033 0.07457 100 90 SH17617 17617 YJR021C_10_469271_468247_INTRON_317_396 intron/exon 30.260446 109.771869 30.260446 80.511423 55.3859345 1.743399488 0.103036 100 91 SH18848 18848 YNL312W_14_48286_49215_INTRON_8_115 intron 32.349236 175.652908 32.349236 144.303672 88.326454 1.946090795 -0.928443 100 92 SH13815 13815 MT COB Cytbi2 25.606598 106.166374 25.606598 81.559776 53.583187 1.729028541 -0.224558 100 93 SH2591 2591 Pro3 5' flank 28.001989 74.44216 51.2220745 1.709457163 0.03536 100 94 SH1776 1776 Leu8 5' flank 28.199652 95.034436 61.617044 1.78970086 -0.239165 100 95 SH21869 21869 copy of SH18599 28.219887 95.518904 61.8693955 1.791475873 -0.246071 100 96 SH1936 1936 Lys1 3' flank 28.219138 68.982925 48.6010315 1.686645487 0.1235 100 97 SH372 372 Asn1 5' flank 28.32376 70.000311 49.1620355 1.691629856 0.116578 100 98 SH2096 2096 Lys4 3' flank 28.412373 71.289373 49.850873 1.697672768 0.105083 100 99 SH14924 14924 MT tRNA Tyr 3' 25.842511 102.857232 25.842511 78.014721 51.928616 1.715406748 -0.163997 100 100 SH13059 13059 MT COX1 COX1ai2 38.036444 134.582229 38.036444 97.545785 67.7911145 1.831172774 0.008866 100 101 SH7027 7027 snR62 5' 44.808696 129.815447 87.3120715 1.941074292 -0.429157 100 102 SH9832 9832 RUF5-1 5' 61.933465 108.128141 85.030803 1.92957628 0.230548 100 103 SH1871 1871 Leu9 96-101 + 3' flank 96 27.676649 71.483275 49.579962 1.69530619 0.051952 100 104 SH18574 18574 YNL044W_14_545264_545873_INTRON_25_103 5' exon 33.287626 129.091269 33.287626 96.803643 65.0456345 1.813218154 -0.087945 101 2 SH6137 6137 snR39B snR39B 26 42 35.996297 103.539187 69.767742 1.843654667 -0.159483 101 3 SH6096 6096 snR37 3' 29.775062 77.899716 53.837389 1.731083989 0.105586 101 4 SH19370 19370 YPR028W_16_623522_624197_INTRON_52_184 3' exon 28.384413 121.288335 28.384413 93.903922 61.1441675 1.786355036 -0.211912 101 5 SH16131 16131 YDR064W_4_579453_580447_INTRON_22_560 intron 29.0447 103.745871 29.0447 75.701171 52.3729355 1.719106917 0.087455 101 6 SH20084 20084 YCR097W spliced 27.098575 71.691794 49.3951845 1.693684612 0.008507 101 7 SH17714 17714 YKL081W_11_282533_284097_INTRON_206_531 intron 31.76035 117.71268 31.76035 86.95233 59.35634 1.773467114 0.057479 101 8 SH18538 18538 YMR230W_13_732413_733140_INTRON_53_462 intron 29.141902 99.460945 29.141902 71.319043 50.2304725 1.700967263 0.153453 101 9 SH16756 16756 YGL076C_7_365994_364333_INTRON_565_1032 3' exon 30.987548 118.003909 30.987548 88.016361 59.5019545 1.774531232 0.005694 101 10 SH1374 1374 Leu1 5' flank 26.386101 72.263116 49.3246085 1.693063647 -0.05042 101 11 SH13111 13111 MT COX1 COX1ai3 31.184578 119.0372 31.184578 88.852622 60.0186 1.778285861 -0.000452 101 12 SH6221 6221 snR40 3' 27.9341 84.010208 55.972154 1.74797202 -0.090276 101 13 SH15091 15091 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 31.301274 120.996892 31.301274 90.695618 60.998446 1.785318771 -0.027212 101 14 SH9221 9221 snR6 / U6 RNA 5' 28.646728 75.164492 51.90561 1.715214299 0.068583 101 15 SH5683 5683 snR34 snR34 336 352 30.385525 86.331781 58.358653 1.766105259 0.00933 101 16 SH11751 11751 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5641 5658 7977.347564 4485.292371 6231.319968 3.794580052 0.279814 101 17 SH19962 19962 YBL059W spliced 31.915118 79.953996 55.934557 1.747680203 0.193789 101 18 SH10801 10801 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 891 908 2443.275531 1822.75164 2133.013586 3.328993622 0.16377 101 19 SH4970 4970 snR9 3' 33.48561 91.930632 62.708121 1.797323788 0.022008 101 20 SH14916 14916 MT tRNA Tyr tRNA 27.050084 105.018082 27.050084 78.967998 53.009041 1.724349947 -0.088897 101 21 SH4104 4104 SRP RNA SRP RNA 411 423 35.160445 97.121705 66.141075 1.820471249 -0.047822 101 22 SH11923 11923 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6501 6514 30.95187 85.609486 58.280678 1.765524595 0.047044 101 23 SH15001 15001 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 26.653344 107.504064 26.653344 81.85072 54.252032 1.734416009 -0.152634 101 24 SH20747 20747 YJL205C-A spliced 26.836462 75.733913 51.2851875 1.709991948 -0.062844 101 25 SH14715 14715 MT tRNA cys; tRNA his 5' 27.016783 105.89086 27.016783 79.874077 53.44543 1.727910576 -0.10264 101 26 SH7737 7737 snoRNA cluster1 intergenic 29.387755 114.976186 29.387755 86.588431 57.988093 1.763338827 -0.039949 101 27 SH2677 2677 Pro4 tRNA-intron 51 65 166.803417 250.733519 208.768468 2.319664904 -0.133472 101 28 SH886 886 Glu3 5' flank 33.859711 85.855741 59.857726 1.777120214 0.16278 101 29 SH1004 1004 Gly2 tRNA 11 30 27.984358 70.952903 49.4686305 1.694329887 0.080391 101 30 SH6481 6481 snR45 3' 26.713076 89.134555 57.9238155 1.762857162 -0.23377 101 31 SH16071 16071 YDR005C_4_458099_456832_INTRON_7_86 3' exon 45.207994 144.244084 45.207994 100.03609 72.622042 1.861068456 0.101557 101 32 SH13671 13671 MT ATP6 ATP6 26.861435 102.274941 26.861435 76.413506 51.6374705 1.71296496 -0.069625 101 33 SH8254 8254 snoRNA cluster4 5' 29.100137 112.196982 29.100137 84.096845 56.598491 1.752804852 -0.014255 101 34 SH2210 2210 Phe1 5' flank 33.352458 89.298883 61.3256705 1.787642305 0.077583 101 35 SH10387 10387 RUF7 3' 35.502571 96.93716 66.2198655 1.820988294 -0.035683 101 36 SH18963 18963 YOL127W_15_80347_81189_INTRON_14_427 intron 26.632829 99.439741 26.632829 73.806912 50.2198705 1.700875588 -0.05278 101 37 SH12550 12550 MT_15S 5' 26.923111 89.406954 26.923111 63.483843 45.203477 1.655171842 0.113692 101 38 SH19131 19131 YPL075W_16_412249_415357_INTRON_9_759 intron 27.119561 108.997548 27.119561 82.877987 54.998774 1.740353009 -0.132449 101 39 SH19748 19748 Negative Control 31.565258 87.614673 59.5899655 1.775173134 0.037493 101 40 SH15147 15147 MT tRNA Thr1 reverse complement tRNA 26.552372 89.905682 26.552372 64.35331 45.452841 1.657561034 0.073951 101 41 SH18576 18576 YNL044W_14_545264_545873_INTRON_25_103 exon/intron 26.30959 109.074327 26.30959 83.764737 55.0371635 1.740656043 -0.200236 101 42 SH12374 12374 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.339934 120.614446 33.339934 88.274512 60.807223 1.78395517 0.099096 101 43 SH12231 12231 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.330105 108.491128 29.330105 80.161023 54.745564 1.738348934 0.048566 101 44 SH924 924 Glu3 3' flank 27.428042 70.150905 48.7894735 1.688326132 0.05263 101 45 SH12407 12407 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.621527 126.986405 34.621527 93.364878 63.9932025 1.806133845 0.019085 101 46 SH3701 3701 Val3 5' flank - tRNA3 3 29.770844 71.324893 50.5478685 1.703702847 0.193603 101 47 SH15925 15925 YDL108W_4_267697_268698_INTRON_29_109 exon/intron 29.608855 113.939256 29.608855 85.330401 57.469628 1.759438386 -0.007277 101 48 SH20200 20200 YDR025W spliced 32.042889 95.125836 63.5843625 1.803350321 -0.085015 101 49 SH13830 13830 MT COB Cytbi2 27.508929 97.848702 27.508929 71.339773 49.424351 1.693940975 0.042175 101 50 SH3481 3481 Tyr1 5' flank 27.057475 77.553501 52.305488 1.718547258 -0.070285 101 51 SH20672 20672 YIL069C spliced 32.54087 85.897648 59.219259 1.772462969 0.108851 101 52 SH4717 4717 snR4 snR4 121 135 49.432263 111.327193 80.379728 1.905146532 -0.03536 101 53 SH21137 21137 YNL147W spliced 29.764986 91.775443 60.7702145 1.783690769 -0.112879 101 54 SH555 555 Cys1 3' flank 27.396245 71.761672 49.5789585 1.695297399 0.028612 101 55 SH8168 8168 snoRNA cluster 3; snR70 37.207695 125.753228 37.207695 89.545533 63.376614 1.801929033 0.165476 101 56 SH8599 8599 snR19 / U1 RNA U1 491 508 27.074131 87.393227 57.233679 1.757651663 -0.18872 101 57 SH2937 2937 Ser1 5' flank 27.01845 82.717014 54.867732 1.739317009 -0.13754 101 58 SH6951 6951 snR58 3' 26.926344 68.681829 47.8040865 1.679465024 0.037386 101 59 SH10667 10667 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 221 239 29.365587 84.562292 56.9639395 1.755600017 -0.00433 101 60 SH5735 5735 snR34 3' 27.361126 75.595749 51.4784375 1.711625357 -0.023804 101 61 SH8016 8016 snoRNA cluster 2 intergenic/snR55 27.388853 102.426814 27.388853 76.037961 51.713407 1.713603151 -0.02759 101 62 SH20987 20987 YML067C spliced 31.390976 87.170803 59.2808895 1.772914712 0.037939 101 63 SH3186 3186 Ser5 tRNA 51 63 32.560817 85.557748 59.0592825 1.771288166 0.115805 101 64 SH11247 11247 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3121 3138 22903.39868 17687.98739 20295.69303 4.307403886 -0.51476 101 65 SH1536 1536 Leu3 3' flank 29.341922 78.588639 53.9652805 1.732114439 0.069159 101 66 SH18700 18700 YNL130C_14_381156_379555_INTRON_30_470 intron 27.048565 108.279175 27.048565 82.23061 54.6395875 1.737507412 -0.129536 101 67 SH2052 2052 Lys4 5' flank 28.868174 68.988243 48.9282085 1.689559314 0.167218 101 68 SH11396 11396 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3866 3883 21029.48757 13237.60386 17133.54571 4.233847248 -0.168377 101 69 SH16776 16776 YGL103W_7_310965_311925_INTRON_50_560 intron 29.432233 102.554577 29.432233 74.122344 51.7772885 1.714139303 0.133531 101 70 SH3043 3043 Ser3 5' flank 36.913484 92.654645 64.7840645 1.811468192 0.08938 101 71 SH18669 18669 YNL112W_14_413636_416278_INTRON_1274_2275 intron 26.392702 103.536542 26.392702 78.14384 52.268271 1.718238134 -0.125014 101 72 SH18199 18199 YML024W_13_225889_226697_INTRON_4_401 intron 29.022566 104.330075 29.022566 76.307509 52.6650375 1.721522398 0.078031 101 73 SH17021 17021 YGR148C_7_788173_787307_INTRON_1_392 intron 28.946833 104.576232 28.946833 76.629399 52.788116 1.722536162 0.068894 101 74 SH11703 11703 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5401 5414 42.957986 90.975427 66.9667065 1.82585894 0.25281 101 75 SH13586 13586 MT COX1 3' 26.843513 99.956799 26.843513 74.113286 50.4783995 1.703105576 -0.041581 101 76 SH7163 7163 snR63 3' 26.541451 85.346797 55.944124 1.747754478 -0.202437 101 77 SH17777 17777 YKL180W_11_109271_110131_INTRON_310_615 intron 30.272043 116.799641 30.272043 87.527598 58.8998205 1.770113971 -0.016958 101 78 SH7520 7520 snR79 5' 25.336942 71.779617 48.5582795 1.686263291 -0.122116 101 79 SH8184 8184 snoRNA cluster 3; snR70 38.168503 131.181144 38.168503 94.012641 66.090572 1.820139511 0.087814 101 80 SH8188 8188 snoRNA cluster 3; snR70/intergenic 25.550692 98.207302 25.550692 73.65661 49.603651 1.695513643 -0.130707 101 81 SH10477 10477 RUF8 RUF8 311 330 26.503191 71.979214 49.2412025 1.69232865 -0.038116 101 82 SH2122 2122 Met1 5' flank - tRNA12 12 27.012941 84.393022 55.7029815 1.745878441 -0.158008 101 83 SH18809 18809 YNL302C_14_62942_61957_INTRON_21_571 5' exon 33.305709 119.807922 33.305709 87.502213 60.403961 1.781065418 0.111315 101 84 SH20715 20715 YJL041W spliced 30.012434 81.369729 55.6910815 1.745785652 0.076913 101 85 SH8550 8550 snR19 / U1 RNA U1 246 258 36.537213 96.082491 66.309852 1.821578059 0.006853 101 86 SH20812 20812 YKL186C spliced 31.530751 94.002445 62.766598 1.79772859 -0.074663 101 87 SH1144 1144 His1 5' flank 26.091881 67.901696 46.9967885 1.672068182 -0.012278 101 88 SH12142 12142 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7596 7614 30.239158 84.790284 57.514721 1.759779017 0.030739 101 89 SH21720 21720 copy of SH11710 2443.039276 1455.404539 1949.221908 3.289861284 0.518561 101 90 SH17875 17875 YLR048W_12_242233_243350_INTRON_91_449 5' exon 27.897887 108.614123 27.897887 81.716236 54.8070615 1.738836518 -0.065001 101 91 SH16302 16302 YDR450W_4_1359912_1360787_INTRON_48_482 intron 27.43972 113.8298 27.43972 87.39008 57.4149 1.759024613 -0.163412 101 92 SH9402 9402 RUF1 3' 42.320924 86.307955 64.3144395 1.808308489 0.349151 101 93 SH21527 21527 copy of SH3562 31.316387 101.218211 66.267299 1.821299269 -0.230677 101 94 SH20441 20441 YGL087C spliced 29.318957 92.667674 60.9933155 1.785282242 -0.148054 101 95 SH976 976 Gly1 3' flank 29.346617 87.643366 58.4949915 1.767118682 -0.060558 101 96 SH18954 18954 YOL127W_15_80347_81189_INTRON_14_427 intron 31.766685 121.213768 31.766685 90.447083 61.106884 1.786090138 -0.003213 101 97 SH4200 4200 telomerase RNA telomerase 36 52 32.401778 93.487417 62.9445975 1.798958461 -0.040215 101 98 SH21795 21795 copy of SH14860 28.475833 64.552625 46.514229 1.667585827 0.204634 101 99 SH11453 11453 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4151 4168 24117.89158 17525.62996 20821.76077 4.318517452 -0.432718 101 100 SH19334 19334 YPL241C_16_96258_95372_INTRON_26_105 5' exon 27.520634 109.118425 27.520634 82.597791 55.0592125 1.740829995 -0.101397 101 101 SH15209 15209 MT COX3 cox3 29.083953 103.688028 29.083953 75.604075 52.344014 1.718867023 0.091285 101 102 SH4311 4311 telomerase RNA telomerase 591 610 31.559274 94.040361 62.7998175 1.797958382 -0.074709 101 103 SH12724 12724 MT COX1 5' 27.940167 101.919724 27.940167 74.979557 51.459862 1.711468617 0.023994 101 104 SH2999 2999 Ser2 5' flank 28.520537 73.096938 50.8087375 1.705938404 0.088191 102 2 SH9010 9010 snR17a / U3a U3a 336 357 30.1335 80.686331 55.4099155 1.743587488 0.092943 102 3 SH6094 6094 snR37 386 + 3' 386 28.337799 67.525948 47.9318735 1.680624404 0.152065 102 4 SH1731 1731 Leu7 5' flank 31.036804 79.338415 55.1876095 1.741841583 0.165461 102 5 SH16545 16545 YER133W_5_432491_433954_INTRON_178_702 intron 31.223128 117.660682 31.223128 87.437554 59.330341 1.773276844 0.026037 102 6 SH11851 11851 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6141 6156 35.83959 97.58552 66.712555 1.824207574 -0.041144 102 7 SH9623 9623 RUF3 3' 26.722894 78.662384 52.692639 1.72174995 -0.107944 102 8 SH2960 2960 Ser1 tRNA 31 48 28.861462 80.225009 54.5432355 1.736740897 0.017418 102 9 SH20802 20802 YKL180W spliced 40.144176 91.04975 65.596963 1.816883733 0.195388 102 10 SH5689 5689 snR34 snR34 366 382 68.082499 138.718903 103.400701 2.014523483 -0.144392 102 11 SH14405 14405 MT 21S rRNA 21S rRNA3 26.793513 95.570788 26.793513 69.777275 48.285394 1.68381578 0.012678 102 12 SH18713 18713 YNL130C_14_381156_379555_INTRON_30_470 intron 251.852512 495.438249 251.852512 244.585737 248.2191245 2.394835239 0.415195 102 13 SH20545 20545 YGR214W spliced 33.441228 98.635912 66.03857 1.81979766 -0.122087 102 14 SH14502 14502 MT 21S rRNA 21S rRNA3 32.717127 118.974877 32.717127 87.25775 59.9874385 1.778060318 0.091779 102 15 SH5498 5498 snR32 snR32 151 168 100.753117 203.202923 151.97802 2.181780782 -0.384035 102 16 SH16906 16906 YGL232W_7_62074_63001_INTRON_58_115 exon/intron 33.483415 138.53021 33.483415 106.046795 69.765105 1.843638252 -0.268382 102 17 SH2429 2429 Phe5 5' flank 33.660963 101.567834 67.6143985 1.830039189 -0.17597 102 18 SH6161 6161 snR39B 3' 27.479445 73.444661 50.462053 1.702964915 0.012206 102 19 SH11181 11181 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2791 2806 27.720974 84.068885 55.8949295 1.747372413 -0.105406 102 20 SH10769 10769 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 731 744 38.96945 100.621993 69.7957215 1.843828801 -0.035238 102 21 SH11165 11165 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2711 2732 25.924833 71.952717 48.938775 1.689653094 -0.080253 102 22 SH18353 18353 YML124C_13_23684_22049_INTRON_26_323 3' exon 28.294357 97.225841 28.294357 69.931484 49.1129205 1.69119576 0.115522 102 23 SH20285 20285 YDR471W spliced 30.580833 84.419845 57.500339 1.759670405 0.052551 102 24 SH5307 5307 snR30 snR30 386 404 28.660066 89.809797 59.2349315 1.772577891 -0.130015 102 25 SH3733 3733 Val3 3' flank 26.865234 70.868948 48.867091 1.689016487 0.00293 102 26 SH14990 14990 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.104688 112.211701 27.104688 86.107013 56.6058505 1.75286132 -0.17175 102 27 SH8688 8688 LSR1 / U2 RNA U2 81 102 29.452319 74.087098 51.7697085 1.71407572 0.135293 102 28 SH10456 10456 RUF8 RUF8 206 223 29.456801 82.590451 56.023626 1.748371214 0.026795 102 29 SH8209 8209 snoRNA cluster 3; snR51 29.403883 100.286645 29.403883 71.882762 50.6433225 1.70452219 0.162433 102 30 SH16981 16981 YGR034W_7_555923_556666_INTRON_20_496 intron/exon 26.844146 104.306951 26.844146 78.462805 52.6534755 1.721427043 -0.09687 102 31 SH17722 17722 YKL156W_11_158616_159214_INTRON_4_353 5' exon 31.049675 117.613995 31.049675 87.56432 59.3069975 1.773105938 0.01634 102 32 SH58 58 Ala2 5' flank 28.588572 84.262898 56.425735 1.751477225 -0.049647 102 33 SH3919 3919 RNase MRP RNaseMRP 11 28 32.873514 92.401787 62.6376505 1.796835459 -0.004142 102 34 SH21516 21516 copy of SH3111 25.857109 73.770473 49.813791 1.697349594 -0.109232 102 35 SH5166 5166 snR13 5' - 3 -14 3 37.024898 81.69051 59.357704 1.773477094 0.3477 102 36 SH18026 18026 YLR306W_12_744151_744851_INTRON_4_137 intron/exon 28.538019 117.642479 28.538019 90.10446 59.3212395 1.773210217 -0.140794 102 37 SH12499 12499 MT_tRNA Pro tRNA 33.514238 132.878903 33.514238 100.364665 66.9394515 1.825682149 -0.155505 102 38 SH9436 9436 RUF2 RUF2 21 40 28.877391 73.069304 50.9733475 1.707343155 0.111998 102 39 SH1510 1510 Leu3 tRNA 21 35 26.234983 89.917345 58.076164 1.763997923 -0.276551 102 40 SH15522 15522 YBR048W_2_332790_333771_INTRON_46_556 intron 39.360299 140.427406 39.360299 102.067107 70.713703 1.84950358 -0.05644 102 41 SH6874 6874 snR56 snR56 1 23 37.195654 96.055171 66.6254125 1.823639911 0.022238 102 42 SH18718 18718 YNL130C_14_381156_379555_INTRON_30_470 intron 26.403429 107.260232 26.403429 81.856803 54.130116 1.733438958 -0.170459 102 43 SH11333 11333 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3551 3569 31.54242 79.865826 55.704123 1.745887341 0.179774 102 44 SH20559 20559 YHR001W-A spliced 32.038438 91.723813 61.8811255 1.791558204 -0.013496 102 45 SH7340 7340 snR68 5' 27.622206 83.208892 55.415549 1.74363164 -0.101836 102 46 SH15683 15683 YBR191W_2_606228_607098_INTRON_12_399 intron 27.632212 110.561484 27.632212 83.929272 55.780742 1.746484287 -0.109784 102 47 SH6983 6983 snR60 5' - 16 -4 16 63.955158 103.453786 83.704472 1.922748661 0.346606 102 48 SH16876 16876 YGL187C_7_150529_149708_INTRON_1_342 intron/exon 29.762409 119.622847 29.762409 90.860438 60.3114235 1.780399579 -0.097494 102 49 SH2252 2252 Phe1 3' flank 29.768232 78.132188 53.95021 1.73199314 0.10217 102 50 SH17593 17593 YJL191W_10_73786_74610_INTRON_11_418 intron 26.930919 98.240091 26.930919 72.309172 49.6200455 1.695657158 -0.011673 102 51 SH3570 3570 Tyr2 3' flank 28.037953 91.106527 59.57224 1.77504393 -0.181564 102 52 SH19597 19597 AEP2/ATP13 2.1 33.61378 91.437911 62.5258455 1.796059573 0.036186 102 53 SH10050 10050 RUF6 RUF6 96 112 33.690459 99.051563 66.371011 1.821978433 -0.12428 102 54 SH17844 17844 YKR094C_11_618384_617630_INTRON_9_376 intron 25.645109 98.855027 25.645109 74.209918 49.9275135 1.698339938 -0.130785 102 55 SH19028 19028 YOR182C_15_678792_678190_INTRON_4_414 intron 28.397557 99.300501 28.397557 71.902944 50.1502505 1.700273107 0.095855 102 56 SH17366 17366 YIL052C_9_257061_256224_INTRON_38_509 intron 26.504192 102.898472 26.504192 77.39428 51.949236 1.715579165 -0.107647 102 57 SH19565 19565 AEP2/ATP13 0.6 37.847708 90.888271 64.3679895 1.808669944 0.149829 102 58 SH4378 4378 telomerase RNA telomerase 926 940 35.401088 93.779596 64.590342 1.810167584 0.029117 102 59 SH3036 3036 Ser2 3' flank 31.101312 94.960295 63.0308035 1.799552843 -0.106971 102 60 SH3904 3904 RNase MRP 5' 29.411039 88.760481 59.08576 1.771482826 -0.077216 102 61 SH13238 13238 MT COX1 COX1-ai4 27.23613 102.116772 27.23613 75.880642 51.558386 1.712299314 -0.036232 102 62 SH4276 4276 telomerase RNA telomerase 416 431 35.562121 84.549041 60.055581 1.778553373 0.243404 102 63 SH20052 20052 YBR220C spliced 29.451541 84.25646 56.8540005 1.754761029 0.005186 102 64 SH7142 7142 snR63 snR63 216 231 41.121629 105.147006 73.1343175 1.864121213 -0.08071 102 65 SH19402 19402 YPR063C_16_678315_677807_INTRON_42_127 intron 34.729702 126.291879 34.729702 92.562177 63.6459395 1.803770702 0.039285 102 66 SH13536 13536 MT COX1 intronic 24.696008 95.767263 24.696008 72.071255 48.3836315 1.684698462 -0.17535 102 67 SH19081 19081 YOR293W_15_867094_867848_INTRON_53_489 intron 36.537412 129.988569 36.537412 94.451157 65.4942845 1.816203402 0.041631 102 68 SH2625 2625 Pro3 tRNA 76 88 44.216517 98.977019 71.596768 1.854893418 0.104139 102 69 SH2344 2344 Phe3 tRNA-intron/exon 46 61 33.767679 93.251704 63.5096915 1.802840003 0.000204 102 70 SH6470 6470 snR45 3' 27.958402 83.00539 55.481896 1.744151294 -0.07659 102 71 SH10286 10286 RUF7 RUF7 41 58 30.960791 94.647668 62.8042295 1.797988892 -0.107832 102 72 SH19632 19632 RNA14 2.2 26.779988 100.506236 63.643112 1.803751407 -0.394901 102 73 SH4147 4147 SRP RNA SRP RNA 626 638 835.308193 773.828635 804.568414 2.905562979 0.098669 102 74 SH21362 21362 Ile2_3 spliced 29.047759 90.595999 59.821879 1.77686005 -0.125515 102 75 SH9399 9399 RUF1 3' 26.524905 73.627358 50.0761315 1.699630771 -0.058263 102 76 SH18496 18496 YMR194W_13_651144_651909_INTRON_17_479 intron 30.202015 108.619191 30.202015 79.417176 54.8095955 1.738856597 0.113096 102 77 SH14246 14246 MT tRNA Ser tRNA 28.195324 105.837392 28.195324 78.642068 53.418696 1.727693282 -0.006626 102 78 SH21555 21555 copy of SH4781 37.34285 95.400033 66.3714415 1.82198125 0.039604 102 79 SH215 215 Arg3 5' flank 24.622919 77.681232 51.1520755 1.70886326 -0.252986 102 80 SH2556 2556 Pro2 tRNA 16 32 46.742052 81.78835 64.265201 1.80797587 0.541845 102 81 SH17277 17277 YHR141C_8_382752_381991_INTRON_5_445 intron 32.441369 133.879139 32.441369 102.43777 67.4395695 1.828914789 -0.224832 102 82 SH13283 13283 MT COX1 Exon 5a 26.565132 101.675539 26.565132 76.110407 51.3377695 1.710436996 -0.087172 102 83 SH7365 7365 snR68 snR68 46 62 26.557578 82.393139 54.4753585 1.736200097 -0.166029 102 84 SH5993 5993 snR36 3' 30.520519 90.874793 60.697656 1.78317192 -0.064073 102 85 SH6038 6038 snR37 snR37 106 120 37.063245 91.050126 64.0566855 1.806564463 0.128314 102 86 SH16464 16464 YER093C-A_5_348396_347908_INTRON_125_199 intron 26.13209 110.847814 26.13209 85.715724 55.923907 1.747597505 -0.236043 102 87 SH17377 17377 YIL052C_9_257061_256224_INTRON_38_509 intron 28.406747 103.781364 28.406747 76.374617 52.390682 1.719254052 0.036741 102 88 SH20415 20415 YGL030W spliced 39.489219 93.177207 66.333213 1.821731034 0.134213 102 89 SH21262 21262 YPL079W spliced 32.497688 103.169622 67.833655 1.831445218 -0.237806 102 90 SH21766 21766 copy of SH13601 25.689147 69.755204 47.7221755 1.678720234 -0.068078 102 91 SH11041 11041 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2091 2106 5722.550294 3514.746632 4618.648463 3.664514908 0.233524 102 92 SH5317 5317 snR30 snR30 436 448 37.294136 89.811587 63.5528615 1.80313511 0.161435 102 93 SH1113 1113 Gly4 tRNA 41 53 279.898708 442.785231 361.3419695 2.557918407 -0.415963 102 94 SH5430 5430 snR31 216-225+3' 216 26.415416 63.966159 45.1907875 1.655049909 0.070417 102 95 SH11693 11693 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5351 5369 45.516966 117.301071 81.4090185 1.910672519 -0.213195 102 96 SH15763 15763 YCR031C_3_178212_177492_INTRON_8_314 intron/exon 28.815061 121.754682 28.815061 93.939621 61.377341 1.78800807 -0.192346 102 97 SH5290 5290 snR30 snR30 301 317 29.622934 90.808757 60.2158455 1.779710789 -0.102901 102 98 SH15785 15785 YDL029W_4_399336_400634_INTRON_23_145 intron 28.273624 104.204608 28.273624 76.930984 52.602304 1.721004767 0.020624 102 99 SH13607 13607 MT ATP8/AAP1 ATP8 / 3' 28.620508 100.426907 28.620508 72.806399 50.7134535 1.705123186 0.098771 102 100 SH8673 8673 LSR1 / U2 RNA U2 6 22 28.292156 69.23969 48.765923 1.688116449 0.124912 102 101 SH12760 12760 MT COX1 COX1ai1 39.076241 147.31589 39.076241 109.239649 74.157945 1.870157687 -0.201889 102 102 SH15125 15125 MT tRNA Phe 5' 25.849305 100.820815 25.849305 75.97151 50.9104075 1.706806573 -0.138024 102 103 SH16423 16423 YER074W_5_306319_307192_INTRON_4_469 5' exon 33.133974 132.249614 33.133974 100.11564 66.624807 1.823635964 -0.160214 102 104 SH15179 15179 MT COX3 cox3 260.871925 689.232457 260.871925 429.360532 345.1162285 2.537965382 -0.455825 103 2 SH4494 4494 U3b (snR17b) U3b 26 45 28.673758 87.91 58.291879 1.765608055 -0.096301 103 3 SH9519 9519 RUF3 5' 28.995 80.204445 54.5997225 1.737190435 0.026373 103 4 SH14812 14812 "MT tRNAs (Lys, Arg1, Gly)" tRNA Arg1 27.977784 106.198484 27.977784 79.2207 53.599242 1.729158648 -0.02856 103 5 SH9980 9980 RUF5-1 RUF5-1 706 725 28.917863 97.521391 63.219627 1.800851929 -0.245466 103 6 SH18949 18949 YOL127W_15_80347_81189_INTRON_14_427 intron 33.157566 124.97607 33.157566 92.818504 62.988035 1.79925806 -0.005925 103 7 SH1987 1987 Lys2 3' flank 28.63215 76.215387 52.4237685 1.719528237 0.053722 103 8 SH16289 16289 YDR450W_4_1359912_1360787_INTRON_48_482 intron 26.545224 108.81348 26.545224 83.268256 54.90674 1.739625659 -0.177484 103 9 SH1394 1394 Leu1 tRNA-intron 41 57 31.204572 96.82613 64.015351 1.806284131 -0.143651 103 10 SH17977 17977 YLR211C_12_564531_563792_INTRON_19_77 intron 31.472969 134.532506 31.472969 104.059537 67.766253 1.831013473 -0.282632 103 11 SH10665 10665 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 211 229 31.825557 92.714395 62.269976 1.794278698 -0.039036 103 12 SH2700 2700 Pro4 3' flank 29.448785 74.388815 51.9188 1.715324646 0.130997 103 13 SH7823 7823 snoRNA cluster1 intergenic 28.914182 105.80746 28.914182 77.893278 53.40373 1.727571592 0.050388 103 14 SH14079 14079 MT COB Cytbi4 25.729191 92.484224 25.729191 67.755033 46.742112 1.669708332 -0.037161 103 15 SH499 499 Asp2 tRNA 56 68 31.243435 101.014705 66.12907 1.820392415 -0.228584 103 16 SH12158 12158 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7676 7693 89.506332 152.687776 121.097054 2.083133578 -0.023429 103 17 SH21654 21654 copy of SH8989 132.29937 188.136824 160.218097 2.204711569 0.070339 103 18 SH20264 20264 YDR424C spliced 33.30358 86.111307 59.7074435 1.776028476 0.136017 103 19 SH16058 16058 YDL219W_4_65243_65766_INTRON_66_136 exon/intron 26.841973 92.935407 26.841973 67.093434 46.9677035 1.671799326 0.053795 103 20 SH5011 5011 snR10 snR10 86 100 36.869271 90.209056 63.5391635 1.803041493 0.142675 103 21 SH2674 2674 Pro4 tRNA-exon/intron 36 52 30.257376 86.497751 58.3775635 1.766245965 0.000702 103 22 SH8515 8515 snR19 / U1 RNA U1 71 93 25.651376 64.367135 45.0092555 1.653301829 0.009206 103 23 SH4780 4780 snR5 snR5 71 85 45.160574 108.14901 76.654792 1.88453931 -0.057507 103 24 SH18256 18256 YML056C_13_164176_162194_INTRON_461_868 5' exon 33.156268 124.924846 33.156268 92.768578 62.962423 1.799081433 -0.004866 103 25 SH10472 10472 RUF8 RUF8 286 302 28.392979 81.592686 54.9928325 1.740306089 -0.030341 103 26 SH20981 20981 YML056C spliced 38.22629 97.904606 68.065448 1.832926707 0.005389 103 27 SH11973 11973 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6751 6768 7186.547754 5299.453921 6243.000838 3.795393393 -0.12021 103 28 SH4669 4669 snR3 3' 29.285826 73.714822 51.500324 1.711809961 0.129655 103 29 SH12332 12332 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.192142 115.663776 29.192142 87.471634 58.331888 1.765906033 -0.064587 103 30 SH14962 14962 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 26.545766 97.882713 26.545766 72.336947 49.4413565 1.694090378 -0.039782 103 31 SH18075 18075 YLR344W_12_819312_820142_INTRON_20_466 intron 29.349465 117.929382 29.349465 89.579917 59.464691 1.774259166 -0.094237 103 32 SH21498 21498 copy of SH2291 239.942975 427.921552 333.9322635 2.523658381 -0.556491 103 33 SH1668 1668 Leu6 5' flank 25.306028 71.244883 48.2754555 1.68372638 -0.117292 103 34 SH130 130 Arg1 26-40 26 40 36.108874 90.670051 63.3894625 1.802017069 0.114511 103 35 SH4415 4415 telomerase RNA telomerase 1111 1127 27.642854 84.400546 56.0217 1.748356284 -0.114665 103 36 SH2409 2409 Phe4 3' flank 28.223619 69.898896 49.0612575 1.690738676 0.111148 103 37 SH11482 11482 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4296 4309 281.173967 204.652806 242.9133865 2.385451449 0.844718 103 38 SH122 122 Arg1 5' flank - tRNA5 5' flank 5 25.978276 68.802396 47.390336 1.675689788 -0.033326 103 39 SH17136 17136 YHR010W_8_126513_127484_INTRON_32_592 intron 37.920383 130.798382 37.920383 93.877999 65.899191 1.818880083 0.085404 103 40 SH9856 9856 RUF5-1 RUF5-1 86 103 32.272225 74.735387 53.503806 1.728384677 0.298848 103 41 SH8010 8010 snoRNA cluster 2 intergenic 25.973084 99.230227 25.973084 74.257143 50.1151135 1.699968718 -0.106923 103 42 SH14431 14431 MT 21S rRNA 21S rRNA3 591.538856 1184.265172 591.538856 593.726316 592.632586 2.772785528 0.069865 103 43 SH831 831 Glu2 5' flank 29.260586 82.056758 55.658672 1.74553284 0.020693 103 44 SH20813 20813 YKL186C spliced 32.003488 92.608533 62.3060105 1.794529944 -0.031606 103 45 SH7826 7826 snoRNA cluster1 intergenic 27.506781 101.971121 27.506781 75.46434 51.4855605 1.711685445 -0.011913 103 46 SH18688 18688 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.705696 105.27363 29.705696 76.567934 53.136815 1.725395519 0.118456 103 47 SH18162 18162 YLR448W_12_1028848_1029762_INTRON_16_399 5' exon 29.290052 111.932406 29.290052 83.642354 56.466203 1.751788585 0.003427 103 48 SH8847 8847 LSR1 / U2 RNA U2 876 892 66.598099 127.400869 96.999484 1.986769424 -0.010162 103 49 SH9419 9419 RUF2 5' 26.748182 75.35568 51.051931 1.708012174 -0.064385 103 50 SH208 208 Arg2 3' flank 28.801997 80.129489 54.465743 1.736123432 0.014725 103 51 SH6146 6146 snR39B snR39B 71 88 30.405706 75.461773 52.9337395 1.723732576 0.176911 103 52 SH14150 14150 MT COB intronic 27.694695 107.08469 27.694695 80.389995 54.042345 1.732734186 -0.062392 103 53 SH632 632 Gln2 5' flank 27.66726 70.446223 49.0567415 1.690698698 0.065322 103 54 SH8985 8985 snR17a / U3a U3a 211 227 39.0472 96.850531 67.9488655 1.83218221 0.045198 103 55 SH18254 18254 YML034W_13_209525_212155_INTRON_1921_2046 3' exon 44.232731 153.64291 44.232731 110.410179 77.321455 1.888300018 -0.11727 103 56 SH678 678 Gln3 5' flank 26.491731 70.845077 48.668404 1.687247105 -0.023709 103 57 SH18146 18146 YLR406C_12_931752_931062_INTRON_58_406 intron 33.319495 123.357767 33.319495 91.038272 62.1788835 1.793642919 0.037565 103 58 SH17223 17223 YHR041C_8_189855_189122_INTRON_15_115 intron/exon 26.350074 96.742891 26.350074 71.392817 48.8714455 1.689055185 -0.041425 103 59 SH651 651 Gln2 tRNA 41 53 40.399755 100.800773 70.600264 1.848806325 -0.009243 103 60 SH8369 8369 snoRNA cluster 5 5' 52.621227 143.469225 52.621227 91.847998 72.2346125 1.858745347 0.404911 103 61 SH14193 14193 MT COB Exon6 27.371105 107.603018 27.371105 81.231913 54.301509 1.734811898 -0.094967 103 62 SH5982 5982 snR36 3' 27.825113 73.599337 50.712225 1.705112666 0.034262 103 63 SH14225 14225 MT ATP9 ATP9 29.60115 115.718912 29.60115 87.117762 58.359456 1.766111235 -0.039694 103 64 SH2922 2922 Pro8 3' flank 30.340404 74.252031 52.2962175 1.718470278 0.189041 103 65 SH16258 16258 YDR424C_4_1319830_1319376_INTRON_26_121 5' exon 34.571565 124.943356 34.571565 91.371791 62.971678 1.799145266 0.061669 103 66 SH13358 13358 MT COX1 intronic 24.955578 97.760428 24.955578 73.80485 49.380214 1.693552968 -0.178022 103 67 SH4811 4811 snR5 3' 27.706833 74.626704 51.1667685 1.708987989 0.012756 103 68 SH1321 1321 Ile3 5' flank - tRNA2 2 27.917117 83.044716 55.4809165 1.744143627 -0.079849 103 69 SH5648 5648 snR34 snR34 161 180 28.164561 77.398629 52.781595 1.72248251 0.007274 103 70 SH19396 19396 YPR063C_16_678315_677807_INTRON_42_127 5' exon 28.542588 114.492724 28.542588 86.950136 57.746362 1.761524629 -0.085454 103 71 SH4773 4773 snR5 snR5 36 52 64.329106 131.284318 97.806712 1.990368659 -0.101575 103 72 SH5935 5935 snR36 snR36 131 143 38.556489 84.195936 61.3762125 1.788000085 0.321002 103 73 SH263 263 Arg4 5' flank 26.892408 82.828419 54.8604135 1.739259077 -0.147698 103 74 SH4831 4831 snR8 5' 26.740017 69.185438 47.9627275 1.680903872 0.017003 103 75 SH18766 18766 YNL246W_14_185459_186348_INTRON_33_127 exon/intron 30.632285 121.483483 30.632285 91.851198 61.2417415 1.787047532 -0.075713 103 76 SH19612 19612 RNA14 1.1 31.577993 96.648554 64.1132735 1.806947952 -0.129755 103 77 SH15303 15303 YAL001C_1_151163_147591_INTRON_71_160 exon/intron 43.290621 136.572664 43.290621 94.282043 68.786332 1.837502152 0.185518 103 78 SH2644 2644 Pro3 3' flank 26.311121 82.424776 54.3679485 1.735342946 -0.183981 103 79 SH20584 20584 YHR016C spliced 26.766558 81.379202 54.07288 1.732979501 -0.138863 103 80 SH4081 4081 SRP RNA SRP RNA 296 312 40.327908 98.668446 69.498177 1.841973413 0.033393 103 81 SH10225 10225 RUF6 RUF6 971 987 27.896392 74.557454 51.226923 1.70949827 0.026692 103 82 SH20920 20920 YLR344W spliced 32.979529 77.533117 55.256323 1.742381982 0.285262 103 83 SH10316 10316 RUF7 RUF7 191 208 28.755245 70.019712 49.3874785 1.693616854 0.145429 103 84 SH16130 16130 YDR064W_4_579453_580447_INTRON_22_560 intron 26.460276 100.548018 26.460276 75.087742 50.774009 1.705641456 -0.081808 103 85 SH21513 21513 copy of SH2858 30.917009 72.754944 51.8359765 1.714631284 0.244905 103 86 SH9540 9540 RUF3 RUF3 86 101 26.507127 83.078904 54.7930155 1.738725202 -0.177911 103 87 SH11063 11063 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2201 2219 4643.875875 3465.065369 4054.470622 3.607934158 -0.015774 103 88 SH9380 9380 RUF1 RUF1 476 492 218.574032 367.295022 292.934527 2.466770563 -0.426575 103 89 SH3023 3023 Ser2 76-82 + 3' flank 76 28.212612 69.57589 48.894251 1.689257798 0.114841 103 90 SH15813 15813 YDL061C_4_341182_340627_INTRON_1_408 intron 27.835401 111.247897 27.835401 84.412496 56.1239485 1.749148217 -0.101728 103 91 SH16125 16125 YDR064W_4_579453_580447_INTRON_22_560 intron 29.263439 113.341545 29.263439 85.078106 57.1707725 1.757174061 -0.018402 103 92 SH16075 16075 YDR025W_4_491510_492319_INTRON_46_384 exon/intron 26.53281 94.814813 26.53281 69.282003 47.9074065 1.680402661 0.000684 103 93 SH18097 18097 YLR367W_12_855877_857316_INTRON_698_1180 intron 26.365447 98.848205 26.365447 73.482758 49.9241025 1.698310266 -0.067989 103 94 SH8094 8094 snoRNA cluster 2 3' 32.543265 109.348397 32.543265 77.805132 55.1741985 1.741736033 0.262021 103 95 SH3142 3142 Ser4 3' flank 26.223453 69.048716 47.6360845 1.677936057 -0.018666 103 96 SH3872 3872 RNaseP RNaseP 326 341 34.8321 89.575103 62.2036015 1.79381553 0.108414 103 97 SH15458 15458 YBL087C_2_60732_59815_INTRON_43_546 intron 27.047513 99.588243 27.047513 73.54073 50.2941215 1.701517227 -0.019559 103 98 SH19959 19959 YBL059C-A spliced 30.072139 67.375181 48.72366 1.687739904 0.268608 103 99 SH14187 14187 MT COB Exon6 28.613042 110.526548 28.613042 82.913506 55.763274 1.746348264 -0.031872 103 100 SH7289 7289 snR66 5' 26.552091 80.923658 53.7378745 1.730280485 -0.148401 103 101 SH17432 17432 YIL133C_9_99416_98527_INTRON_32_321 intron 33.158904 127.301158 33.158904 95.142254 64.150579 1.807200581 -0.056103 103 102 SH16096 16096 YDR059C_4_569765_569229_INTRON_48_137 5' exon 26.348214 102.764004 26.348214 77.41579 51.882002 1.715016726 -0.11928 103 103 SH959 959 Gly1 tRNA 46 58 31.109291 84.448749 57.77902 1.761770171 0.074952 103 104 SH14310 14310 MT VAR1 includes 5’ processing site VAR1 26.629573 102.752354 26.629573 77.122781 51.876177 1.714967963 -0.095186 104 2 SH21836 21836 copy of SH16601 31.144667 99.383487 65.264077 1.8146742 -0.19823 104 3 SH20792 20792 YKL156W spliced 28.894906 74.986842 51.940874 1.715509253 0.087205 104 4 SH7085 7085 snR63 5' 26.611057 72.800007 49.705532 1.696404726 -0.041174 104 5 SH4757 4757 snR5 5' 26.427366 69.486798 47.957082 1.68085275 -0.009817 104 6 SH11674 11674 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5256 5273 61.392772 94.277814 77.835293 1.891176565 0.48934 104 7 SH10977 10977 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1771 1790 47.32104 93.31183 70.316435 1.847056844 0.281847 104 8 SH16808 16808 YGL137W_7_249872_252741_INTRON_19_218 intron/exon 26.897734 100.156263 26.897734 74.258529 50.5781315 1.703962781 -0.039574 104 9 SH20008 20008 YBR082C spliced 31.919911 78.926992 55.4234515 1.743693568 0.21399 104 10 SH5701 5701 snR34 snR34 426 444 27.428074 78.70399 53.066032 1.724816615 -0.059397 104 11 SH6703 6703 snR49 snR49 41 57 115.327183 201.192441 158.259812 2.199370645 -0.206724 104 12 SH13054 13054 MT COX1 COX1ai2 27.334927 106.87324 27.334927 80.538313 53.93662 1.731883727 -0.088874 104 13 SH14337 14337 MT VAR1 includes 5’ processing site VAR1 28.956074 101.771178 28.956074 73.815104 51.385589 1.710841339 0.106958 104 14 SH5088 5088 snR11 snR11 41 58 27.68882 69.836511 48.7626655 1.688087437 0.075163 104 15 SH17975 17975 YLR211C_12_564531_563792_INTRON_19_77 5' exon 37.290387 148.478512 37.290387 112.188125 74.739256 1.87354877 -0.295902 104 16 SH17854 17854 YKR095W-A_11_625432_625839_INTRON_39_113 intron 30.794014 105.03596 30.794014 75.241946 53.01798 1.724423177 0.203742 104 17 SH545 545 Cys1 tRNA 26 42 27.392338 83.782848 55.587593 1.744977869 -0.124464 104 18 SH18846 18846 YNL312W_14_48286_49215_INTRON_8_115 intron 28.099632 94.679638 28.099632 67.580006 47.839819 1.679789528 0.135043 104 19 SH4672 4672 snR3 3' 30.558066 88.548248 59.553157 1.774904789 -0.022307 104 20 SH13621 13621 MT ATP6 ATP6 26.153597 105.637838 26.153597 80.484241 53.318919 1.726881336 -0.171442 104 21 SH3975 3975 RNase MRP RNaseMRP 291 305 30.55674 85.283765 57.9202525 1.762830446 0.035745 104 22 SH746 746 Gln4 tRNA 1 18 77.89994 175.763304 126.831622 2.103227547 -0.427477 104 23 SH18222 18222 YML026C_13_223828_222987_INTRON_48_448 exon/intron 25.88683 98.801098 25.88683 73.914268 49.900549 1.698105324 -0.108888 104 24 SH17640 17640 YJR145C_10_702761_701720_INTRON_15_270 exon/intron 33.25583 125.63392 33.25583 93.37809 63.31696 1.801520055 -0.015602 104 25 SH6490 6490 snR46 5' 25.387819 74.957864 50.1728415 1.700468698 -0.159827 104 26 SH13852 13852 MT COB Cytbi2 26.039277 104.367122 26.039277 79.327845 52.683561 1.721675122 -0.165407 104 27 SH1484 1484 Leu2 3' flank 28.653835 82.872967 55.763401 1.746349253 -0.028698 104 28 SH21752 21752 copy of SH12973 26.480134 70.813801 48.6469675 1.687055773 -0.024128 104 29 SH9715 9715 RUF4 RUF4 351 368 37.72619 90.614463 64.1703265 1.807334249 0.153207 104 30 SH7989 7989 snoRNA cluster 2 snR57/intergenic 27.975532 103.629155 27.975532 76.653623 52.3145775 1.718622722 0.004269 104 31 SH20879 20879 YLR211C spliced 57.082054 119.747023 88.4145385 1.946523684 -0.044501 104 32 SH3184 3184 Ser5 tRNA 41 53 35.606625 80.74107 58.1738475 1.764727788 0.325127 104 33 SH10998 10998 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1876 1893 36334.44887 18199.45203 27266.95045 4.435636569 0.043082 104 34 SH20702 20702 YJL001W spliced 31.093317 89.675409 60.384363 1.780924489 -0.018634 104 35 SH1774 1774 Leu7 3' flank 29.506412 89.990254 59.748333 1.776325793 -0.094169 104 36 SH7154 7154 snR63 3' 28.103677 80.931053 54.517365 1.736534857 -0.041486 104 37 SH16438 16438 YER074W_5_306319_307192_INTRON_4_469 intron 28.363255 108.368671 28.363255 81.005416 54.6843355 1.737862939 -0.025083 104 38 SH3273 3273 Thr2 5' flank 41.761985 105.043433 73.402709 1.865712088 -0.065467 104 39 SH17181 17181 YHR021C_8_148660_147862_INTRON_4_553 intron 28.008327 109.23039 28.008327 82.222063 55.115195 1.741271348 -0.063735 104 40 SH8989 8989 snR17a / U3a U3a 231 247 128.454183 231.124526 179.7893545 2.254763973 -0.313062 104 41 SH17690 17690 YKL006W_11_431544_432358_INTRON_130_527 intron 28.810951 103.271833 28.810951 75.460882 52.1359165 1.717137012 0.075413 104 42 SH731 731 Gln4 5' flank 38.407678 94.948296 66.677987 1.82398248 0.072527 104 43 SH21611 21611 copy of SH7092 27.08519 82.75043 54.91781 1.73971321 -0.133296 104 44 SH10085 10085 RUF6 RUF6 271 289 27.320782 81.040713 54.1807475 1.733844992 -0.096075 104 45 SH17898 17898 YLR061W_12_263195_263949_INTRON_13_401 5' exon 36.656728 129.359131 36.656728 93.702403 65.1795655 1.814111461 0.06058 104 46 SH5964 5964 snR36 snR36 276 292 26.851781 77.965556 52.4086685 1.719403126 -0.089969 104 47 SH12182 12182 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7796 7813 33.134538 86.457403 59.7959705 1.776671919 0.123001 104 48 SH20183 20183 YDL191W spliced 32.751834 88.136432 60.444133 1.781354153 0.077698 104 49 SH19 19 Ala1 5' flank - tRNA7 5' flank 7 37.364585 88.306967 62.835776 1.798206983 0.197356 104 50 SH17471 17471 YJL001W_10_434855_435618_INTRON_66_181 5' exon 28.301333 112.192497 28.301333 84.891164 56.5962485 1.752787645 -0.076112 104 51 SH4553 4553 U3b (snR17b) U3b 321 335 30.427828 79.1721 54.799964 1.738780273 0.130225 104 52 SH6498 6498 snR46 5' 30.501783 93.879191 62.190487 1.793723958 -0.115212 104 53 SH4718 4718 snR4 snR4 126 138 33.053332 89.007357 61.0303445 1.785545821 0.074751 104 54 SH1360 1360 Ile3 3' flank 26.592154 75.619691 51.1059225 1.708471232 -0.079007 104 55 SH17878 17878 YLR048W_12_242233_243350_INTRON_91_449 intron 26.851582 109.024207 26.851582 83.172625 55.0121035 1.740458251 -0.154713 104 56 SH998 998 Gly2 5' flank 27.077079 77.015903 52.046491 1.716391454 -0.061956 104 57 SH21870 21870 copy of SH18600 29.45924 77.071739 53.2654895 1.726445922 0.096192 104 58 SH11908 11908 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6426 6444 30783.09263 16261.63465 23522.36364 4.37148096 0.004217 104 59 SH15212 15212 MT COX3 cox3 29.42821 101.248169 29.42821 72.819959 51.1240845 1.708625544 0.151022 104 60 SH15969 15969 YDL130W_4_229906_230527_INTRON_115_415 3' exon 31.006968 117.74463 31.006968 87.737662 59.372315 1.773583983 0.011438 104 61 SH7051 7051 snR62 snR62 46 67 27.741274 80.009117 53.8751955 1.731388859 -0.05447 104 62 SH7254 7254 snR65 snR65 46 65 29.656836 93.06611 61.361473 1.787895776 -0.139355 104 63 SH9892 9892 RUF5-1 RUF5-1 266 284 26.094747 78.11502 52.1048835 1.716878429 -0.146524 104 64 SH20162 20162 YDL130W spliced 40.208754 100.438388 70.323571 1.847100916 -0.005713 104 65 SH10753 10753 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 651 668 39.986878 106.373113 73.1799955 1.864392378 -0.128209 104 66 SH19367 19367 YPR028W_16_623522_624197_INTRON_52_184 intron 28.855558 108.795914 28.855558 80.940356 54.897957 1.739556183 0.008145 104 67 SH14579 14579 MT 21S rRNA intronic 26.36799 107.924679 26.36799 82.556689 54.4623395 1.736096293 -0.181514 104 68 SH10793 10793 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 851 871 29.065349 75.119575 52.092462 1.716774884 0.096516 104 69 SH7008 7008 snR60 3' 26.896998 79.189278 53.043138 1.724629209 -0.102392 104 70 SH10144 10144 RUF6 RUF6 566 582 36.183885 99.653338 67.9186115 1.831988799 -0.076305 104 71 SH13999 13999 MT COB intronic 27.050337 94.97985 27.050337 68.929513 47.989925 1.681150071 0.04278 104 72 SH19322 19322 YPL218W_16_138697_139408_INTRON_29_167 5' exon 24.82312 102.796606 24.82312 78.973486 51.898303 1.715153157 -0.253223 104 73 SH3012 3012 Ser2 tRNA 21 38 38.682239 97.660754 68.1714965 1.833602828 0.020288 104 74 SH2009 2009 Lys3 5' flank - tRNA7 7 29.043241 87.064711 58.053976 1.763831969 -0.064218 104 75 SH9885 9885 RUF5-1 RUF5-1 231 243 30.62881 83.659054 57.143932 1.75697012 0.068653 104 76 SH5145 5145 snR11 3' 29.405425 83.634697 56.520061 1.752202622 0.010926 104 77 SH14053 14053 MT COB Cytbi4 32.6747 116.036056 32.6747 84.361356 58.518028 1.767289682 0.142263 104 78 SH20001 20001 YBR078W spliced 34.973099 75.761076 55.3670875 1.743251679 0.399584 104 79 SH1218 1218 Ile1 tRNA 51 63 26.345191 84.035213 55.190202 1.741861984 -0.200916 104 80 SH13029 13029 MT COX1 COX1ai2 25.955762 98.076377 25.955762 73.120615 49.5381885 1.694940121 -0.093407 104 81 SH8091 8091 snoRNA cluster 2 3' 28.373915 111.85081 28.373915 84.476895 56.425405 1.751474685 -0.066388 104 82 SH17771 17771 YKL180W_11_109271_110131_INTRON_310_615 intron 32.736216 123.034053 32.736216 91.297837 62.0170265 1.792510939 0.016688 104 83 SH1765 1765 Leu7 3' flank 28.278197 87.696402 57.9872995 1.763332884 -0.11113 104 84 SH6022 6022 snR37 snR37 26 50 26.308867 67.807358 47.0581125 1.672634504 0.005005 104 85 SH14658 14658 MT 21S rRNA 21S rRNA4 33.407652 116.388362 33.407652 83.98071 58.694181 1.768595047 0.17895 104 86 SH3257 3257 Thr1 3' flank 29.00407 75.309137 52.1566035 1.717309302 0.090016 104 87 SH9067 9067 snR14 / U4 RNA 5' 29.024655 75.085941 52.055298 1.716464937 0.094325 104 88 SH21175 21175 YNR053C spliced 29.972758 79.186247 54.5795025 1.737029573 0.101654 104 89 SH17093 17093 YHL001W_8_104270_105084_INTRON_130_527 intron 28.423406 119.056629 28.423406 91.633223 60.0283145 1.778356149 -0.172207 104 90 SH21432 21432 Tyr1_2 spliced 34.325502 94.928568 64.627035 1.810414232 -0.021983 104 91 SH15799 15799 YDL061C_4_341182_340627_INTRON_1_408 intron 26.932273 97.75842 26.932273 71.826147 49.37921 1.693544138 -0.005144 104 92 SH8573 8573 snR19 / U1 RNA U1 361 373 39.262957 180.792617 110.027787 2.041502378 -1.197363 104 93 SH10863 10863 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1201 1219 28.522323 138.772382 83.6473525 1.9224522 -0.955076 104 94 SH1864 1864 Leu9 tRNA 61 77 34.789017 142.908828 88.8489225 1.948652165 -0.846422 104 95 SH2809 2809 Pro6 3' flank 26.432912 71.770036 49.101474 1.69109453 -0.040437 104 96 SH20069 20069 YCR028C-A spliced 32.893016 104.850129 68.8715725 1.838039999 -0.260281 104 97 SH15451 15451 YBL087C_2_60732_59815_INTRON_43_546 intron 31.183975 114.614905 31.183975 84.43093 57.8074525 1.761983831 0.078488 104 98 SH15938 15938 YDL115C_4_255042_253994_INTRON_1_88 intron 40.763682 138.645774 40.763682 98.882092 69.822887 1.843997802 0.037775 104 99 SH14983 14983 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 26.123454 98.807105 26.123454 73.683651 49.9035525 1.698131463 -0.088366 104 100 SH15 15 Ala1 5' flank 28.741848 89.74367 59.242759 1.772635276 -0.125062 104 101 SH8317 8317 snoRNA cluster4 intergenic 26.341381 96.294052 26.341381 70.952671 48.647026 1.687056295 -0.036126 104 102 SH8092 8092 snoRNA cluster 2 3' 26.139744 101.026901 26.139744 75.887157 51.0134505 1.7076847 -0.115441 104 103 SH11940 11940 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6586 6603 30.652933 81.324597 55.988765 1.748100888 0.113488 104 104 SH13399 13399 MT COX1 intronic 26.091022 96.944473 26.091022 71.853451 48.9722365 1.689949938 -0.066623 105 2 SH6326 6326 snR42 3' 30.610919 76.340038 53.4754785 1.728154679 0.177999 105 3 SH4954 4954 snR9 176-187 + 3' 176 28.161323 78.869989 53.515656 1.728480853 -0.011797 105 4 SH10221 10221 RUF6 RUF6 951 965 36.923024 92.64656 64.784792 1.811473069 0.089778 105 5 SH20810 20810 YKL186C spliced 27.968865 82.649596 55.3092305 1.742797616 -0.071584 105 6 SH12696 12696 MT ORF 8 ORF8 26.129825 108.155137 26.129825 83.025312 54.5775685 1.737014183 -0.204277 105 7 SH21623 21623 copy of SH7518 26.780809 75.315884 51.0483465 1.707981679 -0.06153 105 8 SH9661 9661 RUF4 RUF4 81 98 27.39398 80.77475 54.084365 1.733071735 -0.087743 105 9 SH16541 16541 YER131W_5_423587_424307_INTRON_1_361 3' exon 210.752034 448.05702 210.752034 238.304986 224.52851 2.351271494 0.237588 105 10 SH16332 16332 YDR471W_4_1401759_1402553_INTRON_32_415 intron 27.802148 106.952497 27.802148 80.150349 53.9762485 1.732202697 -0.052106 105 11 SH12903 12903 MT COX1 Exon2 / cox1ai2 30.050014 112.354762 30.050014 83.304748 56.677381 1.753409774 0.049684 105 12 SH9201 9201 snR7 U5 RNA 3' 32.074765 98.991529 65.533147 1.816461024 -0.165054 105 13 SH14467 14467 MT 21S rRNA 21S rRNA3 28.837068 115.246556 28.837068 87.409488 58.123278 1.764350099 -0.079867 105 14 SH3682 3682 Val2 3' flank 29.578411 88.444971 59.011691 1.77093806 -0.064112 105 15 SH16388 16388 YER044C-A_5_239773_238459_INTRON_64_151 5' exon 41.12386 153.359625 41.12386 113.235765 77.1798125 1.887503719 -0.230986 105 16 SH7207 7207 snR64 101 + 3' 101 26.368285 67.657925 47.013105 1.672218935 0.011467 105 17 SH8728 8728 LSR1 / U2 RNA U2 281 300 27.29561 73.97719 50.6364 1.704462822 -0.007653 105 18 SH17953 17953 YLR185W_12_522665_523290_INTRON_8_366 exon/intron 30.260354 106.410383 30.260354 77.150029 53.7051915 1.73001627 0.14573 105 19 SH16716 16716 YGL031C_7_438393_437938_INTRON_1_456 intron 26.156627 99.159634 26.156627 74.003007 50.079817 1.699662733 -0.090072 105 20 SH10148 10148 RUF6 RUF6 586 605 33.06838 100.951555 67.0099675 1.826139407 -0.178792 105 21 SH9830 9830 RUF5-1 5' 28.624899 81.683456 55.1541775 1.741578412 -0.016127 105 22 SH19607 19607 RNA14 1.1 25.841622 72.786959 49.3142905 1.692972789 -0.097506 105 23 SH19998 19998 YBR048W spliced 39.978241 98.827931 69.403086 1.841378782 0.022897 105 24 SH20633 20633 YHR123W spliced 37.055647 94.056144 65.5558955 1.816611754 0.06218 105 25 SH20278 20278 YDR450W spliced 26.818045 80.338722 53.5783835 1.728989606 -0.122359 105 26 SH303 303 Arg4 3' flank 27.462364 72.901221 50.1817925 1.70054617 0.018136 105 27 SH17804 17804 YKL190W_11_82949_83552_INTRON_53_128 intron 32.410257 125.33052 32.410257 93.920263 63.16526 1.800478288 -0.049372 105 28 SH19771 19771 Negative Control 28.182362 82.585222 55.383792 1.743382688 -0.056476 105 29 SH14841 14841 MT tRNA Asp tRNA Asp 82.587307 270.968513 82.587307 189.381206 135.9842565 2.133488631 -0.493132 105 30 SH5773 5773 snR35 snR35 51 67 29.600521 85.051816 57.3261685 1.758352916 -0.002595 105 31 SH4285 4285 telomerase RNA telomerase 461 475 40.021137 94.36677 67.1939535 1.827330194 0.119055 105 32 SH4275 4275 telomerase RNA telomerase 411 425 33.183524 74.052116 53.61782 1.729309152 0.360512 105 33 SH19105 19105 YOR312C_15_901173_900242_INTRON_2_427 intron 26.790793 112.440745 26.790793 86.649952 56.7203725 1.753739074 -0.199991 105 34 SH17645 17645 YJR145C_10_702761_701720_INTRON_15_270 intron 37.692527 128.000888 37.692527 91.308361 64.500444 1.809562704 0.136953 105 35 SH527 527 Cys1 5' flank 40.689668 93.029488 66.859578 1.825163631 0.162124 105 36 SH13011 13011 MT COX1 COX1ai2 28.363988 97.166005 28.363988 69.802017 49.0830025 1.690931121 0.122033 105 37 SH7555 7555 snR79 3' 28.752254 76.70158 52.726917 1.722032378 0.055243 105 38 SH8625 8625 snR19 / U1 RNA U1 621 635 107.823421 158.898572 133.3609965 2.125028832 0.116899 105 39 SH6370 6370 snR43 snR43 91 109 28.740245 82.495872 55.6180585 1.745215825 -0.018458 105 40 SH3851 3851 RNaseP RNaseP 221 233 29.281967 80.870269 55.076118 1.740963322 0.036652 105 41 SH5363 5363 snR30 3' 27.284417 79.930421 53.607419 1.729224898 -0.084773 105 42 SH14250 14250 MT tRNA Ser 3' 29.56837 115.618672 29.56837 87.050302 58.309336 1.765738096 -0.039978 105 43 SH21237 21237 YOR293W spliced 34.205321 79.560431 56.882876 1.754981546 0.294177 105 44 SH6243 6243 snR42 5' - 15 -4 15 27.238235 92.664683 59.951459 1.777799757 -0.246528 105 45 SH12549 12549 MT_ORF6 + ORF7 (hypothetical) 3' 26.977448 90.851931 26.977448 64.874483 45.9259655 1.662058295 0.095763 105 46 SH8447 8447 snoRNA cluster 5 snR128 722.784844 1398.159664 722.784844 676.37482 699.579832 2.844837281 0.122581 105 47 SH11256 11256 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3166 3179 32.707429 73.77676 53.2420945 1.726255132 0.337013 105 48 SH11385 11385 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3811 3831 28159.02235 15505.70876 21832.36555 4.339100794 -0.036995 105 49 SH14122 14122 MT COB intronic 28.217517 104.205313 28.217517 76.987796 52.6026565 1.721007677 0.016142 105 50 SH10270 10270 RUF7 5' 30.571609 85.878217 58.224913 1.765108848 0.025651 105 51 SH15403 15403 YBL050W_2_125087_126081_INTRON_31_146 intron/exon 38.725197 142.832795 38.725197 105.107598 71.9163975 1.856827924 -0.13037 105 52 SH3373 3373 Thr4 5' flank 28.89953 75.96397 52.43175 1.719594353 0.074544 105 53 SH14023 14023 MT COB Exon4 27.156372 105.763717 27.156372 79.607345 53.3818585 1.72739369 -0.089581 105 54 SH3140 3140 Ser4 3' flank 27.462448 76.461965 51.9622065 1.715687584 -0.028102 105 55 SH8297 8297 snoRNA cluster4 intergenic 27.546711 101.457319 27.546711 74.910608 51.2286595 1.709512992 -0.00205 105 56 SH19113 19113 YOR312C_15_901173_900242_INTRON_2_427 3' exon 34.660655 118.895897 34.660655 85.235242 59.9479485 1.777774326 0.205044 105 57 SH1074 1074 Gly3 3' flank 27.591837 80.206108 53.8989725 1.731580486 -0.06711 105 58 SH13913 13913 MT COB Cytbi3 27.587348 106.580714 27.587348 79.993366 53.790357 1.730704427 -0.064757 105 59 SH1317 1317 Ile3 5' flank 27.586465 87.743963 57.665214 1.760913908 -0.157409 105 60 SH3298 3298 Thr2 3' flank 30.172547 75.895845 53.034196 1.724555989 0.156664 105 61 SH11882 11882 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6296 6314 30.48043 72.926817 51.7036235 1.71352098 0.215747 105 62 SH15285 15285 MT 9S rRNA 9S 93.221341 239.069158 93.221341 146.847817 120.034579 2.079306374 0.090938 105 63 SH7936 7936 snoRNA cluster1 3' 27.26265 96.200129 27.26265 69.937479 48.6000645 1.686636846 0.043906 105 64 SH2849 2849 Pro7 tRNA-intron 51 67 67.994117 179.90164 123.9478785 2.093239098 -0.61897 105 65 SH8463 8463 snoRNA cluster 5 snR128/3' 26.1569 109.792502 26.1569 84.635602 55.396251 1.743480374 -0.221558 105 66 SH11007 11007 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1921 1934 1809.540644 1300.770344 1555.155494 3.191773819 0.300759 105 67 SH11605 11605 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4911 4928 2919.551973 2434.195804 2676.873889 3.427627911 -0.061017 105 68 SH63 63 Ala2 5' flank 29.625343 88.440095 59.032719 1.771092787 -0.061905 105 69 SH17466 17466 YIL148W_9_68708_69528_INTRON_9_442 intron 27.42774 97.221055 27.42774 70.793315 49.1105275 1.691174599 0.043861 105 70 SH15477 15477 YBL091C-A_2_46858_46559_INTRON_35_122 intron 32.014546 117.394271 32.014546 86.379725 59.1971355 1.772300692 0.078369 105 71 SH5541 5541 snR33 5' - 12 -9 12 29.729145 86.398414 58.0637795 1.763905302 -0.021092 105 72 SH13010 13010 MT COX1 COX1ai2 29.773571 102.68258 29.773571 73.909009 51.84129 1.7146758 0.158143 105 73 SH17597 17597 YJL191W_10_73786_74610_INTRON_11_418 3' exon 27.29688 101.92112 27.29688 75.62424 51.46056 1.711474508 -0.028693 105 74 SH5456 5456 snR32 5' 31.716316 73.935365 52.8258405 1.722846416 0.276885 105 75 SH13681 13681 MT ORF 5 (hypothetical) 5' 28.933957 99.39259 28.933957 71.458633 50.196295 1.700671663 0.137841 105 76 SH6767 6767 snR50 snR50 11 28 84.87773 148.656056 116.766893 2.067319724 -0.0343 105 77 SH20068 20068 YBR230C spliced 29.521583 91.456489 60.489036 1.781676663 -0.118483 105 78 SH21057 21057 YMR194W spliced 47.332702 106.658582 76.995642 1.886466145 0.011227 105 79 SH3206 3206 Ser5 3' flank 26.08276 73.642853 49.8628065 1.697776719 -0.090837 105 80 SH6180 6180 snR40 5' 29.074192 90.560739 59.8174655 1.776828008 -0.123695 105 81 SH16168 16168 YDR139C_4_733917_733611_INTRON_150_222 intron 26.633228 98.343202 26.633228 72.709974 49.671601 1.696108158 -0.038383 105 82 SH1138 1138 His1 5' flank 27.977496 89.43503 58.706263 1.768684436 -0.155808 105 83 SH6434 6434 snR45 snR45 16 37 43.070522 104.892185 73.9813535 1.869122273 -0.036102 105 84 SH12735 12735 MT COX1 Exon1 25.769518 89.777647 25.769518 65.008129 45.3888235 1.656948926 0.007725 105 85 SH5176 5176 snR13 snR13 36 50 61.814875 124.50364 93.1592575 1.969226018 -0.040797 105 86 SH16442 16442 YER074W_5_306319_307192_INTRON_4_469 intron 33.779506 131.245928 33.779506 98.466422 66.122964 1.820352313 -0.109992 105 87 SH19584 19584 AEP2/ATP13 0.6 31.507799 78.764953 55.136376 1.741438217 0.199776 105 88 SH10129 10129 RUF6 RUF6 491 507 29.045264 71.765717 50.4054905 1.702477845 0.140943 105 89 SH17089 17089 YHL001W_8_104270_105084_INTRON_130_527 intron 28.654702 114.319813 28.654702 86.665111 57.6599065 1.760873934 -0.075128 105 90 SH16113 16113 YDR064W_4_579453_580447_INTRON_22_560 intron 27.893534 101.490568 27.893534 74.597034 51.245284 1.709653904 0.025968 105 91 SH395 395 Asn1 56-70 56 70 46.676374 103.318143 74.9972585 1.875045388 0.063476 105 92 SH12582 12582 MT_15S MT_15S 26.614449 109.267878 26.614449 83.653429 55.133939 1.741419021 -0.177197 105 93 SH2303 2303 Phe2 3' flank 26.446134 66.364585 46.4053595 1.666568141 0.035665 105 94 SH4734 4734 snR4 3' 28.472176 151.635711 90.0539435 1.954502736 -1.138387 105 95 SH2889 2889 Pro8 5' flank 28.679911 110.017778 69.3488445 1.841039229 -0.475128 105 96 SH10195 10195 RUF6 RUF6 821 840 29.022172 96.504162 62.763167 1.79770485 -0.224426 105 97 SH13364 13364 MT COX1 intronic 29.352272 110.316874 29.352272 81.964602 55.658437 1.745531006 0.027713 105 98 SH19256 19256 YPL143W_16_282121_282969_INTRON_20_544 5' exon 31.959805 114.395882 31.959805 83.436077 57.697941 1.761160315 0.129715 105 99 SH20032 20032 YBR181C spliced 28.053897 74.277771 51.165834 1.708980057 0.041063 105 100 SH1924 1924 Lys1 3' flank 30.482377 74.221201 52.351789 1.718931527 0.198253 105 101 SH10989 10989 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1831 1847 25991.5369 13579.92076 19785.72883 4.296352053 0.067868 105 102 SH7311 7311 snR66 snR66 46 63 48.226609 105.997392 77.1120005 1.88712197 0.040325 105 103 SH18693 18693 YNL112W_14_413636_416278_INTRON_1274_2275 intron/exon 27.721408 96.022904 27.721408 69.301496 48.511452 1.685844274 0.084808 105 104 SH12247 12247 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.042355 133.559961 37.042355 97.517606 67.2799805 1.827885857 -0.012327 106 2 SH13709 13709 MT tRNAGlu (and 5' processing site for COB) tRNA / 3' 27.639642 112.62719 27.639642 85.987548 56.813595 1.754452271 -0.133535 106 3 SH11821 11821 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5991 6008 31.773492 78.086278 54.929885 1.73980869 0.224402 106 4 SH7383 7383 snR68 136 + 3' 136 29.208212 85.828372 57.518292 1.759805981 -0.034512 106 5 SH18178 18178 YLR448W_12_1028848_1029762_INTRON_16_399 intron 38.133496 145.395977 38.133496 108.262481 73.1979885 1.864499147 -0.204039 106 6 SH16249 16249 YDR397C_4_1266887_1266355_INTRON_38_129 5' exon 34.747956 131.02841 34.747956 97.280454 66.014205 1.819637398 -0.061225 106 7 SH17288 17288 YHR141C_8_382752_381991_INTRON_5_445 intron 26.787356 90.903641 26.787356 65.116285 45.9518205 1.662302722 0.078575 106 8 SH6112 6112 snR39B 5' 27.314661 70.080779 48.69772 1.687508628 0.045612 106 9 SH5512 5512 snR32 3' 29.821254 86.218487 58.0198705 1.763576755 -0.013727 106 10 SH2870 2870 Pro7 3' flank 27.494747 81.28708 54.3909135 1.735526353 -0.087155 106 11 SH21261 21261 YPL079W spliced 32.110884 79.361728 55.736306 1.746138182 0.213476 106 12 SH3819 3819 RNaseP RNaseP 61 73 65.26282 102.046829 83.6548245 1.922490992 0.392328 106 13 SH3485 3485 Tyr1 5' flank 26.264611 71.65796 48.9612855 1.689852812 -0.051238 106 14 SH4685 4685 snR4 5' 24.98271 69.331575 47.1571425 1.673547481 -0.115668 106 15 SH21930 21930 copy of SH21370 34.365118 94.408646 64.386882 1.808797394 -0.009845 106 16 SH19818 19818 Negative Control 32.246472 104.475133 68.3608025 1.834807152 -0.269973 106 17 SH5948 5948 snR36 snR36 196 220 28.97314 74.084459 51.5287995 1.712050025 0.104421 106 18 SH5849 5849 snR35 snR35 431 448 34.222448 90.380541 62.3014945 1.794498465 0.075144 106 19 SH10426 10426 RUF8 RUF8 56 78 28.096975 76.282031 52.189503 1.717583161 0.017296 106 20 SH16491 16491 YER117W_5_396765_397649_INTRON_43_513 5' exon 35.2261 130.28552 35.2261 96.05942 65.64276 1.817186833 -0.023894 106 21 SH4701 4701 snR4 snR4 41 62 24.293052 74.03125 49.162151 1.691630876 -0.232779 106 22 SH9884 9884 RUF5-1 RUF5-1 226 240 28.461016 80.122914 54.291965 1.73473556 -0.007632 106 23 SH10646 10646 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 116 135 29.697208 71.741769 50.7194885 1.705174865 0.183102 106 24 SH763 763 Gln4 3' flank 26.754997 80.97403 53.8645135 1.731302742 -0.13468 106 25 SH5185 5185 snR13 snR13 81 97 48.228441 124.893657 86.561049 1.937322511 -0.285918 106 26 SH12345 12345 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.800704 117.597127 35.800704 82.796423 59.2985635 1.773044173 0.291655 106 27 SH19474 19474 ADH1 32.163271 81.832417 56.997844 1.755858428 0.168232 106 28 SH19229 19229 YPL090C_16_378390_377286_INTRON_7_400 intron 34.904183 121.785751 34.904183 87.881568 61.3928755 1.788117975 0.148941 106 29 SH15600 15600 YBR089C-A_2_426588_426148_INTRON_1_114 intron/exon 25.839915 105.039906 25.839915 80.199991 53.019953 1.724439338 -0.1907 106 30 SH5022 5022 snR10 snR10 141 153 32.061687 75.792583 53.927135 1.731807348 0.272452 106 31 SH19935 19935 YBL026W spliced 27.157278 84.523163 55.8402205 1.746947125 -0.14951 106 32 SH4425 4425 telomerase RNA telomerase 1161 1182 25.099918 68.626147 46.8630325 1.670830388 -0.096526 106 33 SH7492 7492 snR71 76-90 + 3' 76 27.468239 76.315851 51.892045 1.715100786 -0.025789 106 34 SH9300 9300 RUF1 RUF1 76 92 31.945699 88.567483 60.256591 1.780004558 0.036795 106 35 SH17358 17358 YIL052C_9_257061_256224_INTRON_38_509 intron 25.852482 97.114207 25.852482 72.261725 49.0571035 1.690701902 -0.089748 106 36 SH434 434 Asp1 5' flank - tRNA10 5' flank 10 26.57853 70.53377 48.55615 1.686244244 -0.013183 106 37 SH7613 7613 snR189 snR189 136 155 26.964567 73.863056 50.4138115 1.702549533 -0.02967 106 38 SH20855 20855 YLR061W spliced 31.556857 93.342101 62.449479 1.79552882 -0.060822 106 39 SH18744 18744 YNL162W_14_331319_332151_INTRON_5_516 intron 31.747658 120.830872 31.747658 90.083214 60.915436 1.784727357 0.002221 106 40 SH14519 14519 MT 21S rRNA 21S rRNA3 29.904488 116.200222 29.904488 87.295734 58.600111 1.767898439 -0.029205 106 41 SH4034 4034 SRP RNA SRP RNA 61 80 27.749056 72.628746 50.188901 1.700607686 0.041729 106 42 SH20635 20635 YHR141C spliced 29.836577 94.422297 62.129437 1.793297418 -0.153648 106 43 SH10422 10422 RUF8 RUF8 36 55 29.48627 82.162703 55.8244865 1.746824737 0.033878 106 44 SH6415 6415 snR45 5' 29.240523 85.614106 57.4273145 1.759118508 -0.029166 106 45 SH9013 9013 snR17a / U3a U3a 351 363 31.175176 83.342111 57.2586435 1.757841055 0.09819 106 46 SH18129 18129 YLR388W_12_898158_898821_INTRON_1_488 3' exon 32.985493 123.467174 32.985493 91.481681 62.233587 1.794024833 0.019087 106 47 SH20940 20940 YLR426W spliced 28.282623 76.650043 52.466333 1.719880711 0.024886 106 48 SH13935 13935 MT COB Cytbi3 30.747698 125.4362 30.747698 95.688502 63.2181 1.800841439 -0.133995 106 49 SH7815 7815 snoRNA cluster1 intergenic 31.104114 130.124108 31.104114 100.019994 65.562054 1.816652551 -0.212308 106 50 SH3406 3406 Thr4 3' flank 29.014899 78.304291 53.659595 1.72964739 0.051671 106 51 SH4706 4706 snR4 snR4 66 78 307.457541 302.822424 305.1399825 2.484499117 0.317353 106 52 SH18761 18761 YNL162W_14_331319_332151_INTRON_5_516 intron 29.664937 101.83778 29.664937 73.172843 51.41889 1.711122697 0.161278 106 53 SH2105 2105 Met1 5' flank 28.959381 70.781241 49.870311 1.697842077 0.148672 106 54 SH4347 4347 telomerase RNA telomerase 771 788 35.072239 100.654006 67.8631225 1.831633838 -0.122587 106 55 SH14025 14025 MT COB Exon4 27.683736 101.573206 27.683736 74.88947 51.286603 1.710003934 0.007777 106 56 SH19751 19751 Negative Control 29.79577 88.465593 59.1306815 1.771812884 -0.054673 106 57 SH16110 16110 YDR064W_4_579453_580447_INTRON_22_560 intron 29.620137 113.048771 29.620137 84.428634 57.0243855 1.756060614 0.009669 106 58 SH14844 14844 MT tRNA Asp 3' 29.529268 115.816984 29.529268 87.287716 58.408492 1.766475994 -0.045963 106 59 SH11598 11598 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4876 4893 26726.03263 16261.24584 21493.63923 4.332309955 -0.18035 106 60 SH21652 21652 copy of SH8772 29.966151 84.696112 57.3311315 1.758390513 0.02032 106 61 SH11335 11335 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3561 3578 95.5364 149.982817 122.7596085 2.089055495 0.080344 106 62 SH8647 8647 snR19 / U1 RNA 3' 28.220031 74.333295 51.276663 1.709919754 0.05144 106 63 SH2087 2087 Lys4 3' flank 28.016219 80.144152 54.0801855 1.733038173 -0.037576 106 64 SH2537 2537 Pro2 5' flank 30.02097 78.220709 54.1208395 1.733364525 0.116966 106 65 SH5553 5553 snR33 snR33 51 71 27.418616 76.445806 51.932211 1.715436813 -0.0309 106 66 SH6884 6884 snR56 snR56 51 70 27.251596 80.758129 54.0048625 1.732432865 -0.097355 106 67 SH19387 19387 YPR043W_16_654161_654842_INTRON_3_405 intron 46.395372 147.864502 46.395372 102.46913 74.432251 1.871761153 0.075037 106 68 SH10589 10589 RUF8 RUF8 871 890 27.586902 65.897359 46.7421305 1.669708504 0.123774 106 69 SH20061 20061 YBR255C-A spliced 27.809999 85.905084 56.8575415 1.754788077 -0.120997 106 70 SH19691 19691 Negative Control 34.902585 92.938955 63.92077 1.805641998 0.03528 106 71 SH481 481 Asp2 5' flank 30.171875 84.087486 57.1296805 1.756861795 0.040633 106 72 SH9472 9472 RUF2 RUF2 201 215 30.189661 82.030212 56.1099365 1.749039777 0.079741 106 73 SH14067 14067 MT COB Cytbi4 32.478572 131.19406 32.478572 99.715488 66.09703 1.820181945 -0.169158 106 74 SH11117 11117 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2471 2487 277.198493 293.686298 285.4423955 2.455518477 0.236271 106 75 SH21094 21094 YNL044W spliced 29.725782 77.269078 53.49743 1.728332919 0.110603 106 76 SH3512 3512 Tyr1 3' flank 26.887668 76.551469 51.7195685 1.713654893 -0.069476 106 77 SH7759 7759 snoRNA cluster1 snR76 26.331666 102.765032 26.331666 77.433366 51.882516 1.715021029 -0.120708 106 78 SH8213 8213 snoRNA cluster 3; snR51 26.192303 102.263291 26.192303 77.070988 51.6316455 1.712915966 -0.126426 106 79 SH19855 19855 Negative Control 28.928864 89.989813 59.4593385 1.774220073 -0.120619 106 80 SH8623 8623 snR19 / U1 RNA U1 611 630 29.545332 73.402136 51.473734 1.711585674 0.150533 106 81 SH2508 2508 Pro1 tRNA 31 43 71.185373 113.032896 92.1091345 1.964302701 0.282263 106 82 SH1626 1626 Leu5 5' flank - tRNA12 12 74.172475 146.808048 110.4902615 2.043324001 -0.157552 106 83 SH10741 10741 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 591 608 35.714009 98.634589 67.174299 1.827203143 -0.065864 106 84 SH10445 10445 RUF8 RUF8 151 167 29.78772 88.861921 59.3248205 1.773236433 -0.06195 106 85 SH8868 8868 LSR1 / U2 RNA U2 981 998 28.724304 71.204826 49.964565 1.698662111 0.12725 106 86 SH16413 16413 YER056C-A_5_270183_269421_INTRON_38_434 intron 29.327741 101.095687 29.327741 72.767946 51.0478435 1.7079774 0.145294 106 87 SH13756 13756 MT COB intronic 26.988677 95.443938 26.988677 69.455261 48.221969 1.68324494 0.031094 106 88 SH3583 3583 Val1 5' flank 31.391095 92.67901 62.0350525 1.792637154 -0.056842 106 89 SH14777 14777 MT ORF11; tRNA Leu; tRNA Gln tRNA Gln 31.194353 121.643859 31.194353 91.449506 61.3219295 1.787615812 -0.044597 106 90 SH12780 12780 MT COX1 COX1ai1 26.192246 111.004367 26.192246 85.812121 56.0021835 1.74820496 -0.232836 106 91 SH19505 19505 ACT1 29.742108 72.159118 50.950613 1.707149413 0.180141 106 92 SH2431 2431 Phe5 5' flank 26.837477 76.049317 51.443397 1.711329639 -0.066759 106 93 SH638 638 Gln2 5' flank 30.547078 130.093667 80.3203725 1.904825714 -0.765444 106 94 SH11449 11449 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4131 4148 42.03644 95.387974 68.712207 1.837033898 0.137275 106 95 SH12278 12278 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.686483 126.862081 28.686483 99.175598 63.9310405 1.805711773 -0.282239 106 96 SH20407 20407 YFR031C-A spliced 31.379854 98.376243 64.8780485 1.812097778 -0.171115 106 97 SH13176 13176 MT COX1 Exon4 27.452777 104.974133 27.452777 78.521356 52.9870665 1.724169877 -0.055375 106 98 SH16901 16901 YGL226C-A_7_73156_72747_INTRON_22_170 intron/exon 25.513495 93.493895 25.513495 68.9804 47.2469475 1.674373755 -0.070573 106 99 SH808 808 Glu1 tRNA 56 68 34.530708 85.442414 59.986561 1.778053965 0.19651 106 100 SH1573 1573 Leu4 tRNA-exon/intron 36 53 30.006018 91.017875 60.5119465 1.781841123 -0.089262 106 101 SH1689 1689 Leu6 tRNA 11 25 5839.360739 10806.02713 8322.693935 3.920263924 -1.51841 106 102 SH16543 16543 YER133W_5_432491_433954_INTRON_178_702 5' exon 25.269859 95.966268 25.269859 71.696409 48.483134 1.685590685 -0.126108 106 103 SH5263 5263 snR30 snR30 166 182 27.599446 87.548947 57.5741965 1.760227886 -0.154295 106 104 SH21363 21363 Ile2_3 spliced 32.177924 88.053307 60.1156155 1.778987298 0.055496 107 2 SH12613 12613 MT_15S MT_15S 31.734254 123.932482 31.734254 93.198228 62.466241 1.795645372 -0.051716 107 3 SH8065 8065 snoRNA cluster 2 snR61 26.851312 94.152902 26.851312 68.30159 47.576451 1.677392042 0.03734 107 4 SH11004 11004 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1906 1924 1781.500094 1161.024723 1471.262409 3.167690139 0.458248 107 5 SH3331 3331 Thr3 tRNA 1 15 35.649149 83.73773 59.6934395 1.775926603 0.265073 107 6 SH3473 3473 Tyr1 5' flank 30.072535 73.138076 51.6053055 1.712694353 0.187466 107 7 SH14721 14721 MT tRNA cys; tRNA his tRNA Cys 26.365902 96.425735 26.365902 71.059833 48.7128675 1.687643695 -0.035782 107 8 SH16892 16892 YGL226C-A_7_73156_72747_INTRON_22_170 5' exon 30.986194 111.395723 30.986194 81.409529 56.1978615 1.74971979 0.126346 107 9 SH20173 20173 YDL137W spliced 28.69448 81.388715 55.0415975 1.74069103 -0.007933 107 10 SH4345 4345 telomerase RNA telomerase 761 780 26.609832 77.129063 51.8694475 1.714911622 -0.096692 107 11 SH17207 17207 YHR039C-A_8_187670_187164_INTRON_4_165 intron 31.328333 112.082969 31.328333 81.754636 56.5414845 1.752367207 0.134499 107 12 SH12026 12026 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7016 7038 26.4842 59.033198 42.758699 1.631024483 0.156834 107 13 SH19712 19712 Negative Control 56.397613 90.860672 73.6291425 1.867049743 0.487096 107 14 SH15894 15894 YDL082W_4_308423_309387_INTRON_5_369 3' exon 28.930328 105.471034 28.930328 77.540706 53.235517 1.726201476 0.055982 107 15 SH21715 21715 copy of SH11500 36.214231 85.419688 60.8169595 1.784024704 0.238132 107 16 SH12468 12468 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 30177.88858 47280.05094 30177.88858 17103.16236 23640.52547 4.373657126 -0.101396 107 17 SH21840 21840 copy of SH17170 28.387815 66.975856 47.6818355 1.678352965 0.163311 107 18 SH13496 13496 MT COX1 intronic 27.236211 99.6909 27.236211 73.454689 50.34545 1.701960227 -0.005047 107 19 SH13098 13098 MT COX1 COX1ai3 30.145146 117.335714 30.145146 88.190568 59.167857 1.77208584 -0.034254 107 20 SH17904 17904 YLR061W_12_263195_263949_INTRON_13_401 intron 37.602723 139.276835 37.602723 102.674112 70.1384175 1.845955963 -0.106255 107 21 SH16736 16736 YGL076C_7_365994_364333_INTRON_565_1032 intron 29.000161 108.356861 29.000161 80.3567 54.6784305 1.73781604 0.024809 107 22 SH18839 18839 YNL302C_14_62942_61957_INTRON_21_571 intron/exon 33.548211 117.531227 33.548211 84.983016 59.2656135 1.772802784 0.166216 107 23 SH17184 17184 YHR021C_8_148660_147862_INTRON_4_553 intron 28.302288 117.403529 28.302288 90.101241 59.2017645 1.772334651 -0.151841 107 24 SH8309 8309 snoRNA cluster4 intergenic 29.734575 125.011873 29.734575 96.277298 63.0059365 1.799381471 -0.188328 107 25 SH8410 8410 snoRNA cluster 5 snR190 27.281188 97.276205 27.281188 70.995017 49.1381025 1.691418382 0.030813 107 26 SH10046 10046 RUF6 RUF6 76 97 25.499653 75.263531 50.381592 1.702271887 -0.155268 107 27 SH14463 14463 MT 21S rRNA 21S rRNA3 26.114503 93.119916 26.114503 68.005413 47.059958 1.672651535 -0.012074 107 28 SH15603 15603 YBR119W_2_479296_480281_INTRON_9_97 5' exon 33.447677 119.191238 33.447677 86.743561 60.095619 1.778842813 0.130479 107 29 SH27 27 Ala1 tRNA 31 45 56.953867 122.841884 89.8978755 1.953749428 -0.096048 107 30 SH18592 18592 YNL069C_14_494998_493953_INTRON_29_477 5' exon 92.619477 227.562167 92.619477 135.94269 114.2810835 2.057974349 0.221328 107 31 SH3705 3705 Val3 tRNA 6 22 112.153183 234.050224 173.1017035 2.238301342 -0.496377 107 32 SH4244 4244 telomerase RNA telomerase 256 270 39.269506 92.801779 66.0356425 1.819778408 0.13795 107 33 SH1404 1404 Leu1 tRNA 91 108 25.953975 73.356002 49.6549885 1.695962886 -0.096624 107 34 SH20118 20118 YDL075W spliced 30.448676 77.403766 53.926221 1.731799987 0.154132 107 35 SH19281 19281 YPL143W_16_282121_282969_INTRON_20_544 intron 30.678706 115.215124 30.678706 85.536418 58.107562 1.764232654 0.0365 107 36 SH9843 9843 RUF5-1 RUF5-1 21 41 29.024666 87.123156 58.073911 1.763981075 -0.066112 107 37 SH13814 13814 MT COB Cytbi2 31.796905 122.101417 31.796905 91.304512 61.5507085 1.789233056 -0.016536 107 38 SH20805 20805 YKL180W spliced 29.621106 80.533253 55.0771795 1.740971692 0.06253 107 39 SH5558 5558 snR33 snR33 76 93 32.206849 79.224237 55.715543 1.745976367 0.220152 107 40 SH21697 21697 copy of SH10662 116.340803 209.050551 162.695677 2.211376013 -0.261372 107 41 SH12974 12974 MT COX1 COX1ai2 27.789279 106.6623 27.789279 79.873021 53.83115 1.731033658 -0.049508 107 42 SH9619 9619 RUF3 3' 27.36647 65.983548 46.675009 1.66908441 0.107069 107 43 SH20128 20128 YDL082W spliced 31.429212 85.279796 58.354504 1.766074382 0.073497 107 44 SH7705 7705 snoRNA cluster1 intergenic/snR77 26.52434 96.453792 26.52434 70.929452 48.726896 1.687768747 -0.022482 107 45 SH8407 8407 snoRNA cluster 5 snR190 28.582147 106.00202 28.582147 78.419873 53.50101 1.728361981 0.021881 107 46 SH20591 20591 YHR039C-A spliced 32.955037 101.426952 67.1909945 1.827311069 -0.191267 107 47 SH3088 3088 Ser3 3' flank 30.785628 77.145289 53.9654585 1.732115871 0.178217 107 48 SH14005 14005 MT COB intronic 28.89593 99.558861 28.89593 71.662931 50.2794305 1.70139035 0.132568 107 49 SH4887 4887 snR8 3' 29.325086 76.555799 52.9404425 1.723787567 0.094317 107 50 SH14475 14475 MT 21S rRNA 21S rRNA3 24.960594 94.525772 24.960594 70.565178 47.762886 1.679090561 -0.134562 107 51 SH13284 13284 MT COX1 Exon 5a 29.802438 111.838611 29.802438 83.036173 56.4193055 1.751427736 0.043386 107 52 SH2881 2881 Pro8 5' flank 53.929999 105.229828 79.5799135 1.900803463 0.154635 107 53 SH6024 6024 snR37 snR37 36 57 28.143139 72.397332 50.2702355 1.70131092 0.071949 107 54 SH12731 12731 MT COX1 Exon1 27.994992 105.826633 27.994992 78.831641 53.4133165 1.727649545 -0.022472 107 55 SH72 72 Ala2 5' flank - tRNA10 -4 10 64.027676 123.524631 93.7761535 1.972092415 0.009063 107 56 SH2307 2307 Phe2 3' flank 31.619112 80.967693 56.2934025 1.750457499 0.161828 107 57 SH11935 11935 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6561 6578 118.606662 155.107377 136.8570195 2.136267078 0.269931 107 58 SH4696 4696 snR4 snR4 16 33 28.459894 80.867251 54.6635725 1.737698011 -0.016965 107 59 SH4870 4870 snR8 snR8 131 147 30.967893 69.61168 50.2897865 1.701479792 0.292222 107 60 SH6399 6399 snR43 3' 29.312303 79.128705 54.220504 1.73416355 0.0604 107 61 SH11712 11712 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5446 5459 117.6745 130.517892 124.096196 2.093758469 0.560298 107 62 SH4215 4215 telomerase RNA telomerase 111 127 30.235276 84.047719 57.1414975 1.756951618 0.044175 107 63 SH3026 3026 Ser2 3' flank 27.86913 77.016635 52.4428825 1.719686554 -0.007641 107 64 SH11881 11881 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6291 6309 34.990391 86.681965 60.836178 1.784161922 0.178959 107 65 SH17525 17525 YJL136C_10_156971_156248_INTRON_25_484 intron 27.816526 121.161926 27.816526 94.3454 61.080963 1.785905876 -0.246217 107 66 SH4009 4009 SRP RNA 5' 27.728383 70.167409 48.947896 1.689734029 0.073377 107 67 SH15341 15341 YAL030W_1_87288_87754_INTRON_103_215 intron/exon 30.094331 114.231085 30.094331 85.136754 57.6155425 1.760539655 0.018005 107 68 SH13017 13017 MT COX1 COX1ai2 28.030669 116.099934 28.030669 89.069265 58.549967 1.767526655 -0.146927 107 69 SH14068 14068 MT COB Cytbi4 33.119673 119.134557 33.119673 87.014884 60.0672785 1.778637956 0.112457 107 70 SH14921 14921 MT tRNA Tyr 3' 30.789045 112.84628 30.789045 83.057235 56.92314 1.755288849 0.086806 107 71 SH21229 21229 YOR234C spliced 28.355101 86.719814 57.5374575 1.759950667 -0.093874 107 72 SH4629 4629 snR3 snR3 61 77 30.627506 81.402848 56.015177 1.748305713 0.110889 107 73 SH17979 17979 YLR211C_12_564531_563792_INTRON_19_77 intron/exon 28.057098 101.18341 28.057098 74.126312 51.091705 1.708350396 0.043322 107 74 SH6365 6365 snR43 snR43 66 83 27.932881 89.186673 58.559777 1.767599414 -0.153642 107 75 SH4695 4695 snR4 snR4 11 25 545.664987 738.341091 642.003039 2.807537084 -0.381654 107 76 SH2372 2372 Phe4 5' flank 29.71869 71.434349 50.5765195 1.703948939 0.188764 107 77 SH6916 6916 snR58 5' 33.773494 96.927686 65.35059 1.815249513 -0.07816 107 78 SH2359 2359 Phe3 3' flank 27.585535 74.836815 51.211175 1.70936474 0.001608 107 79 SH15541 15541 YBR078W_2_393082_394818_INTRON_59_388 intron 28.878792 109.678245 28.878792 81.799453 55.3391225 1.743032268 -0.000909 107 80 SH2658 2658 Pro4 5' flank 27.106362 67.678288 47.392325 1.675708015 0.064343 107 81 SH9963 9963 RUF5-1 RUF5-1 621 640 27.032377 66.855736 46.9440565 1.671580615 0.070813 107 82 SH19340 19340 YPL241C_16_96258_95372_INTRON_26_105 intron/exon 25.993357 96.903644 25.993357 71.910287 48.951822 1.689768861 -0.074604 107 83 SH3292 3292 Thr2 61-72 + 3' flank 61 49.679205 99.756631 74.717918 1.873424762 0.188066 107 84 SH6424 6424 snR45 5' 27.767113 68.554297 48.160705 1.682692836 0.098383 107 85 SH6436 6436 snR45 snR45 26 44 28.766895 83.030046 55.8984705 1.747399925 -0.023174 107 86 SH6743 6743 snR49 3' 24.615189 75.105401 49.860295 1.697754844 -0.221233 107 87 SH8834 8834 LSR1 / U2 RNA U2 811 825 29.00657 84.087903 56.5472365 1.752411386 -0.020217 107 88 SH2779 2779 Pro6 5' flank - tRNA3 3 33.467381 90.956679 62.21203 1.793874373 0.043171 107 89 SH3086 3086 Ser3 3' flank 29.054373 79.60407 54.3292215 1.735033482 0.03775 107 90 SH3319 3319 Thr3 5' flank 26.625147 69.951647 48.288397 1.683842789 -0.001856 107 91 SH42 42 Ala1 3' flank 30.242809 83.358349 56.800579 1.754352763 0.057249 107 92 SH11317 11317 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3471 3489 974.897882 951.892404 963.395143 2.983804452 -0.024972 107 93 SH17592 17592 YJL191W_10_73786_74610_INTRON_11_418 intron 26.27742 85.983165 26.27742 60.705745 43.4915825 1.63840521 0.113791 107 94 SH17881 17881 YLR048W_12_242233_243350_INTRON_91_449 intron 32.404751 154.334076 32.404751 122.929325 77.667038 1.890236743 -0.600034 107 95 SH21600 21600 copy of SH6671 26.569553 73.975086 50.2723195 1.701328923 -0.059545 107 96 SH19743 19743 Negative Control 29.162604 83.760451 56.4615275 1.751752623 -0.006202 107 97 SH4861 4861 snR8 snR8 86 100 29.39624 83.711422 56.553831 1.75246203 0.009419 107 98 SH11373 11373 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3751 3771 27.406395 68.952704 48.1795495 1.682862735 0.067641 107 99 SH19477 19477 ADH1 27.661937 72.353293 50.007615 1.699036142 0.03932 107 100 SH6724 6724 snR49 snR49 146 162 75.863514 166.917952 121.390733 2.084185534 -0.36466 107 101 SH9897 9897 RUF5-1 RUF5-1 291 303 34.268514 91.729025 62.9987695 1.799332067 0.04622 107 102 SH6296 6296 snR42 snR42 261 278 33.302739 86.523083 59.912911 1.777520421 0.128603 107 103 SH20385 20385 YFL034C-B spliced 28.024614 84.476508 56.250561 1.750126858 -0.089722 107 104 SH16191 16191 YDR381C-A_4_1238839_1238301_INTRON_27_220 5' exon 30.474075 106.522735 30.474075 77.04866 53.7613675 1.730470307 0.160307 108 2 SH7134 7134 snR63 snR63 176 192 27.056927 75.631549 51.344238 1.710491713 -0.04579 108 3 SH8368 8368 snoRNA cluster 5 5' 40.180475 144.440613 40.180475 105.260138 72.7203065 1.861655701 -0.102736 108 4 SH20131 20131 YDL082W spliced 28.966215 80.158771 54.562493 1.736894205 0.025072 108 5 SH16802 16802 YGL137W_7_249872_252741_INTRON_19_218 intron 29.441315 108.156613 29.441315 79.715298 54.5783065 1.737020056 0.06128 108 6 SH2203 2203 Met2 3' flank 27.859923 75.443185 51.651554 1.713083392 0.012403 108 7 SH1431 1431 Leu2 5' flank 27.998365 83.68459 55.8414775 1.746956901 -0.082058 108 8 SH15538 15538 YBR078W_2_393082_394818_INTRON_59_388 intron 32.035859 117.729897 32.035859 86.694038 59.3649485 1.773530095 0.073641 108 9 SH12214 12214 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 43.040975 153.925511 43.040975 111.884536 77.4627555 1.889092942 -0.167585 108 10 SH17203 17203 YHR039C-A_8_187670_187164_INTRON_4_165 5' exon 27.982933 95.723847 27.982933 68.740914 48.3619235 1.684503566 0.110685 108 11 SH7201 7201 snR64 snR64 71 87 35.206426 101.57939 68.392908 1.83501107 -0.138322 108 12 SH11869 11869 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6231 6247 3039.908207 2322.273675 2681.090941 3.428311545 0.066102 108 13 SH10554 10554 RUF8 RUF8 696 712 34.307517 109.605102 71.9563095 1.857068881 -0.316451 108 14 SH16548 16548 YER133W_5_432491_433954_INTRON_178_702 intron 35.324489 167.721114 35.324489 133.396625 84.360557 1.926139439 -0.693621 108 15 SH1938 1938 Lys1 3' flank 23.801274 60.557045 42.1791595 1.625097921 -0.067806 108 16 SH4742 4742 snR4 3' 31.517835 83.758197 57.638016 1.760709023 0.105116 108 17 SH5782 5782 snR35 snR35 96 108 43.758934 101.213057 72.4859955 1.860254108 0.04991 108 18 SH6130 6130 snR39B 5' - 11 -9 11 24.777049 64.460299 44.618674 1.64951666 -0.057086 108 19 SH21316 21316 YPL249C-A spliced 32.464124 96.5627 64.513412 1.809650012 -0.104296 108 20 SH8926 8926 snR17a / U3a 5' 26.629552 74.346314 50.487933 1.703187591 -0.060005 108 21 SH245 245 Arg3 3' flank 27.160732 74.091766 50.626249 1.704375751 -0.018678 108 22 SH3446 3446 Trp1 tRNA 61 78 29.530788 97.898928 63.714858 1.80424072 -0.223372 108 23 SH16734 16734 YGL076C_7_365994_364333_INTRON_565_1032 intron 29.053893 96.614236 29.053893 68.560343 48.807118 1.688483164 0.185538 108 24 SH11059 11059 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2181 2197 17645.44032 10903.49394 14274.46713 4.154559905 -0.090803 108 25 SH10378 10378 RUF7 3' 27.949595 85.662576 56.8060855 1.754394863 -0.108732 108 26 SH5555 5555 snR33 snR33 61 77 34.979587 91.807709 63.393648 1.802045744 0.062033 108 27 SH17237 17237 YHR079C-A_8_262554_262193_INTRON_114_199 5' exon 26.738137 97.851192 26.738137 72.113055 49.425596 1.693951915 -0.022902 108 28 SH18241 18241 YML026C_13_223828_222987_INTRON_48_448 intron 27.344747 106.102691 27.344747 79.757944 53.5513455 1.728770387 -0.078449 108 29 SH16303 16303 YDR450W_4_1359912_1360787_INTRON_48_482 intron 29.7064 112.663078 29.7064 83.956678 56.831539 1.754589417 0.022233 108 30 SH2386 2386 Phe4 5' flank 26.702336 80.433477 53.5679065 1.728904674 -0.131686 108 31 SH4874 4874 snR8 snR8 151 163 37.662147 82.692037 60.177092 1.779431197 0.337541 108 32 SH6706 6706 snR49 snR49 56 73 26.251806 76.328796 51.290301 1.710035248 -0.112771 108 33 SH12258 12258 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 68.181776 188.931118 68.181776 121.749342 94.965559 1.977566129 0.098873 108 34 SH7208 7208 snR64 3' 27.470083 74.936583 51.203333 1.709298232 -0.007747 108 35 SH7297 7297 snR66 5' 37.599722 103.160616 70.380169 1.847450305 -0.116071 108 36 SH5858 5858 snR35 snR35 476 492 28.844899 79.764612 54.3047555 1.734837863 0.022099 108 37 SH15045 15045 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.072848 112.003949 27.072848 85.931101 56.5019745 1.752063625 -0.171917 108 38 SH21505 21505 copy of SH2797 32.091596 85.72784 58.909718 1.770186944 0.093305 108 39 SH10434 10434 RUF8 RUF8 96 115 27.661622 76.43239 52.047006 1.716395752 -0.014099 108 40 SH13659 13659 MT ATP6 ATP6 27.740487 110.882572 27.740487 84.142085 55.941286 1.747732446 -0.104951 108 41 SH19911 19911 YAL003W spliced 29.88207 95.911278 62.896674 1.79862768 -0.175813 108 42 SH16325 16325 YDR471W_4_1401759_1402553_INTRON_32_415 intron 38.843663 130.554009 38.843663 92.710346 65.7770045 1.818074092 0.131012 108 43 SH4982 4982 snR10 5' 26.636316 79.437673 53.0369945 1.724578905 -0.123878 108 44 SH3519 3519 Tyr1 3' flank 51.800206 111.749321 81.7747635 1.912619297 -0.001109 108 45 SH16793 16793 YGL103W_7_310965_311925_INTRON_50_560 intron/exon 26.392683 94.670507 26.392683 69.277824 47.8352535 1.67974808 -0.009456 108 46 SH20227 20227 YDR129C spliced 30.918646 96.911249 63.9149475 1.805602437 -0.153303 108 47 SH5177 5177 snR13 snR13 41 55 30.952301 86.939557 58.945929 1.770453817 0.023213 108 48 SH9593 9593 RUF3 RUF3 351 366 28.911459 81.995284 55.4533715 1.743927956 -0.001173 108 49 SH14928 14928 MT tRNA Asn 5' 30.389226 102.008202 30.389226 72.618976 51.504101 1.711841811 0.214336 108 50 SH3389 3389 Thr4 tRNA 31 47 31.776507 93.895387 62.835947 1.798208165 -0.065713 108 51 SH3896 3896 RNaseP 3' 27.351403 77.558902 52.4551525 1.719788154 -0.049997 108 52 SH8382 8382 snoRNA cluster 5 5' 30.234777 130.660973 30.234777 101.426196 65.8304865 1.818427065 -0.264888 108 53 SH14967 14967 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.311419 113.332557 28.311419 86.021138 57.1662785 1.757139921 -0.088679 108 54 SH19023 19023 YOR182C_15_678792_678190_INTRON_4_414 intron 30.590248 105.611269 30.590248 76.021021 53.3056345 1.726773117 0.180919 108 55 SH20271 20271 YDR447C spliced 37.19895 101.264352 69.231651 1.840304689 -0.08662 108 56 SH11326 11326 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3516 3533 27904.69773 17686.9036 22795.80067 4.357854851 -0.25669 108 57 SH6888 6888 snR56 snR56 71 88 28.309956 76.16741 52.238683 1.717992219 0.03303 108 58 SH12444 12444 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 46.026581 156.583364 46.026581 111.556783 78.791682 1.896480372 -0.103219 108 59 SH450 450 Asp1 71 + 3' flank 71 3' flank 33.604407 83.369126 58.4867665 1.767057612 0.198117 108 60 SH1256 1256 Ile2 5' flank 26.433987 77.463398 51.9486925 1.715574621 -0.113611 108 61 SH8864 8864 LSR1 / U2 RNA U2 961 976 29.252871 84.743325 56.998098 1.755860364 -0.012786 108 62 SH10359 10359 RUF7 RUF7 406 423 29.404469 90.623596 60.0140325 1.778252809 -0.10965 108 63 SH15288 15288 MT 9S rRNA 9S 27.164527 106.003903 27.164527 79.839376 53.5019515 1.728369623 -0.091929 108 64 SH13058 13058 MT COX1 COX1ai2 27.342191 94.590587 27.342191 68.248396 47.7952935 1.679385133 0.072976 108 65 SH409 409 Asn1 3' flank 32.228512 87.894044 60.061278 1.778594569 0.060399 108 66 SH9922 9922 RUF5-1 RUF5-1 416 433 30.060167 90.646194 60.3531805 1.780700162 -0.080518 108 67 SH4710 4710 snR4 snR4 86 104 30.268937 87.574736 58.9218365 1.770276275 -0.017929 108 68 SH14203 14203 MT COB 3' 28.198331 101.118448 28.198331 73.920117 51.059224 1.70807421 0.055571 108 69 SH14288 14288 MT VAR1 includes 5’ processing site VAR1 26.095308 103.108992 26.095308 78.013684 52.054496 1.716458246 -0.145237 108 70 SH14939 14939 MT tRNA Asn 3' 26.255652 101.618215 26.255652 76.362563 51.3091075 1.71019446 -0.112913 108 71 SH6689 6689 snR49 5' 28.662081 76.891904 52.7769925 1.722444638 0.046843 108 72 SH3253 3253 Thr1 3' flank 28.386148 75.558196 51.972172 1.715770867 0.046135 108 73 SH3849 3849 RNaseP RNaseP 211 225 32.874111 84.354431 58.614271 1.768003368 0.150533 108 74 SH20574 20574 YHR012W spliced 27.816021 78.50843 53.1622255 1.725603153 -0.030443 108 75 SH1993 1993 Lys3 5' flank 32.408188 96.416449 64.4123185 1.808968932 -0.102692 108 76 SH6756 6756 snR50 5' 27.288416 77.227169 52.2577925 1.71815106 -0.05005 108 77 SH12141 12141 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7591 7611 27.931882 87.831173 57.8815275 1.762539984 -0.134958 108 78 SH2728 2728 Pro5 tRNA 21 36 33.04433 76.094104 54.569217 1.736947722 0.316871 108 79 SH3505 3505 Tyr1 tRNA 66 78 44.647706 100.713142 72.680424 1.861417452 0.077187 108 80 SH5188 5188 snR13 snR13 96 115 29.016149 78.502692 53.7594205 1.730454579 0.049219 108 81 SH19682 19682 SIR1 2.4 29.304588 91.600849 60.4527185 1.781415835 -0.130797 108 82 SH3144 3144 Ser4 3' flank 26.53943 68.381873 47.4606515 1.676333696 0.013713 108 83 SH19103 19103 YOR312C_15_901173_900242_INTRON_2_427 intron 32.727358 122.639562 32.727358 90.912204 61.819781 1.791127462 0.025052 108 84 SH101 101 Ala2 3' flank 30.596839 97.616349 64.106594 1.806902703 -0.176967 108 85 SH5972 5972 snR36 snR36 316 332 28.682957 77.878894 53.2809255 1.72657176 0.035445 108 86 SH10873 10873 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1251 1264 36566.26056 18715.53903 27640.8998 4.441552177 0.007247 108 87 SH3042 3042 Ser3 5' flank 32.803086 87.21098 60.007033 1.778202154 0.09612 108 88 SH12330 12330 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.698055 107.93502 30.698055 78.236965 54.46751 1.736137522 0.158781 108 89 SH13813 13813 MT COB Cytbi2 26.736671 102.823171 26.736671 77.0865 51.9115855 1.715264293 -0.087005 108 90 SH16553 16553 YER133W_5_432491_433954_INTRON_178_702 intron 31.437561 112.785402 31.437561 82.347841 56.892701 1.755056553 0.127974 108 91 SH1770 1770 Leu7 3' flank 28.357291 88.191149 58.27422 1.765476469 -0.116095 108 92 SH6512 6512 snR46 snR46 51 65 47.036741 103.23771 75.1372255 1.875855154 0.071647 108 93 SH2076 2076 Lys4 tRNA-intron/exon 46 62 28.530533 103.755073 66.142803 1.820482596 -0.360577 108 94 SH21817 21817 copy of SH15702 34.777314 83.793685 59.2854995 1.772948483 0.236177 108 95 SH18771 18771 YNL246W_14_185459_186348_INTRON_33_127 intron/exon 28.796851 107.590282 28.796851 79.793431 54.295141 1.734760965 0.018596 108 96 SH16371 16371 YER003C_5_159117_157735_INTRON_32_124 exon/intron 31.254418 126.370891 31.254418 96.116473 63.6854455 1.804040191 -0.127348 108 97 SH3799 3799 RNaseP 5' flank 81.84735 139.186027 110.5166885 2.043427863 0.044634 108 98 SH20554 20554 YHL001W spliced 51.574753 114.880951 83.227852 1.920268686 -0.060068 108 99 SH19272 19272 YPL143W_16_282121_282969_INTRON_20_544 intron 27.600596 101.140241 27.600596 74.539645 51.0701205 1.708166883 0.006477 108 100 SH16690 16690 YGL030W_7_439087_439634_INTRON_4_233 intron 25.627009 101.306443 25.627009 76.679434 51.1532215 1.70887299 -0.163558 108 101 SH19066 19066 YOR293W_15_867094_867848_INTRON_53_489 intron 34.496311 135.004712 34.496311 101.508401 68.002356 1.832523959 -0.153829 108 102 SH6873 6873 snR56 5' - 17 -4 17 29.206487 85.842681 57.524584 1.759853487 -0.034849 108 103 SH8216 8216 snoRNA cluster 3; snR51 81.036398 218.76266 81.036398 138.726262 109.88133 2.040923907 0.039973 108 104 SH5319 5319 snR30 snR30 446 463 28.816721 81.865444 55.3410825 1.74304765 -0.005771 109 2 SH12840 12840 MT COX1 COX1ai1 29.920951 110.916876 29.920951 81.995925 55.958438 1.747865583 0.063486 109 3 SH11604 11604 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4906 4924 502.996419 408.910615 455.953517 2.65892057 0.459676 109 4 SH6270 6270 snR42 snR42 131 150 29.501866 73.208282 51.355074 1.710583359 0.150407 109 5 SH21032 21032 YMR125W spliced 131.418865 195.885442 163.6521535 2.213921725 -0.005977 109 6 SH1978 1978 Lys2 3' flank 30.014346 97.645471 63.8299085 1.805024222 -0.197623 109 7 SH5883 5883 snR35 3' 27.515805 83.717124 55.6164645 1.745203378 -0.115205 109 8 SH6913 6913 snR58 5' 29.232942 81.207827 55.2203845 1.742099426 0.029324 109 9 SH7712 7712 snoRNA cluster1 snR77 37.963657 134.946036 37.963657 97.982379 67.973018 1.832336553 -0.001921 109 10 SH2049 2049 Lys4 5' flank 27.625383 85.527515 56.576449 1.752635686 -0.129137 109 11 SH19027 19027 YOR182C_15_678792_678190_INTRON_4_414 intron 25.742132 84.541769 25.742132 59.799637 42.7708845 1.631148232 0.090605 109 12 SH18830 18830 YNL302C_14_62942_61957_INTRON_21_571 intron 30.075929 124.035095 30.075929 94.959166 62.5175475 1.796001933 -0.151725 109 13 SH19668 19668 SIR1 2.4 25.347111 69.336093 47.341602 1.67524295 -0.088108 109 14 SH16188 16188 YDR367W_4_1212837_1213603_INTRON_31_131 intron/exon 26.997148 97.794442 26.997148 71.797294 49.397221 1.693702517 -0.000125 109 15 SH10869 10869 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1231 1247 36.716053 130.156836 83.4364445 1.921355789 -0.610636 109 16 SH12089 12089 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7331 7348 35.807153 90.326241 63.066697 1.799800086 0.115054 109 17 SH7210 7210 snR64 3' 23.538523 70.174439 46.856481 1.670769669 -0.239248 109 18 SH2336 2336 Phe3 tRNA 6 22 105.40422 172.336539 138.8703795 2.142609622 -0.04884 109 19 SH7732 7732 snoRNA cluster1 intergenic 27.921646 108.39548 27.921646 81.473834 54.69774 1.737969383 -0.060423 109 20 SH11527 11527 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4521 4539 612.416938 529.164506 570.790722 2.756476905 0.298225 109 21 SH9287 9287 RUF1 RUF1 11 27 29.960211 78.892376 54.4262935 1.735808759 0.104588 109 22 SH9636 9636 RUF4 5' 30.015068 79.933496 54.974282 1.740159566 0.094908 109 23 SH10839 10839 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1081 1099 219.656969 218.489036 219.0730025 2.340588861 0.432083 109 24 SH16069 16069 YDR005C_4_458099_456832_INTRON_7_86 intron 53.579106 155.347447 53.579106 102.768341 78.1737235 1.893060798 0.19596 109 25 SH15960 15960 YDL130W_4_229906_230527_INTRON_115_415 intron 28.146229 111.826781 28.146229 84.680552 56.4133905 1.751382202 -0.083979 109 26 SH7514 7514 snR79 5' 39.694609 96.404694 68.0496515 1.832825905 0.068245 109 27 SH6290 6290 snR42 snR42 231 248 26.843894 73.327148 50.085521 1.699712196 -0.031321 109 28 SH15414 15414 YBL059W_2_110555_111205_INTRON_287_355 5' exon 28.668509 112.15319 28.668509 84.484681 56.576595 1.752636806 -0.047018 109 29 SH14641 14641 MT 21S rRNA intronic 27.460148 93.591975 27.460148 67.131827 47.2959875 1.674824298 0.097095 109 30 SH18722 18722 YNL130C_14_381156_379555_INTRON_30_470 3' exon 29.139508 113.818851 29.139508 85.679343 57.4094255 1.758983201 -0.034976 109 31 SH1534 1534 Leu3 3' flank 30.982781 85.121574 58.0521775 1.763818514 0.057222 109 32 SH16352 16352 YDR500C_4_1450856_1450201_INTRON_8_396 intron 31.272542 111.160969 31.272542 80.888427 56.0804845 1.748811757 0.148592 109 33 SH14591 14591 MT 21S rRNA Sce1 endonuc 26.981573 98.476278 26.981573 72.494705 49.738139 1.696689532 -0.010513 109 34 SH752 752 Gln4 tRNA 31 47 118.537944 305.506307 212.0221255 2.326381184 -0.878722 109 35 SH17217 17217 YHR041C_8_189855_189122_INTRON_15_115 5' exon 35.340494 124.092001 35.340494 89.751507 62.5460005 1.796199544 0.116804 109 36 SH19845 19845 Negative Control 28.496752 88.901074 58.698913 1.768630059 -0.121932 109 37 SH10033 10033 RUF6 RUF6 11 27 26.706072 65.390547 46.0483095 1.663213691 0.068689 109 38 SH2862 2862 Pro7 3' flank 30.709392 84.934187 57.8217895 1.762091528 0.048769 109 39 SH9659 9659 RUF4 RUF4 71 89 27.513966 77.762161 52.6380635 1.721299904 -0.041452 109 40 SH2667 2667 Pro4 tRNA 1 13 227.284137 356.173332 291.7287345 2.464979208 -0.3274 109 41 SH3112 3112 Ser4 5' flank 27.071082 78.619125 52.8451035 1.723004753 -0.083002 109 42 SH633 633 Gln2 5' flank 26.950693 72.387907 49.6693 1.696088039 -0.011303 109 43 SH2281 2281 Phe2 tRNA 1 15 148.251725 231.973198 190.1124615 2.279010585 -0.146986 109 44 SH2890 2890 Pro8 5' flank 26.756456 78.701247 52.7288515 1.722048312 -0.106073 109 45 SH9874 9874 RUF5-1 RUF5-1 176 192 29.019565 75.027395 52.02348 1.7161994 0.094775 109 46 SH16630 16630 YFL039C_6_54695_53260_INTRON_11_318 intron/exon 28.837997 106.564669 28.837997 78.726672 53.7823345 1.730639649 0.034762 109 47 SH1466 1466 Leu2 101-114 + 3' flank 101 28.487039 82.169971 55.328505 1.742948936 -0.031169 109 48 SH15268 15268 MT 9S rRNA 9S 28.377116 99.176654 28.377116 71.799538 50.088327 1.699736526 0.09585 109 49 SH8962 8962 snR17a / U3a U3a 96 112 28.604001 76.19464 52.3993205 1.719325655 0.052142 109 50 SH15049 15049 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.625925 100.824293 26.625925 75.198368 50.9121465 1.706821408 -0.071202 109 51 SH2665 2665 Pro4 5' flank - tRNA5 5 45.69433 113.644537 79.6694335 1.901291729 -0.14663 109 52 SH5093 5093 snR11 snR11 66 82 30.064836 76.103324 53.08408 1.724964295 0.147193 109 53 SH15407 15407 YBL059C-A_2_110500_110086_INTRON_35_119 exon/intron 28.391233 104.112834 28.391233 76.721601 52.556417 1.72062575 0.031174 109 54 SH933 933 Gly1 5' flank 28.442443 71.242648 49.8425455 1.697600214 0.10775 109 55 SH4804 4804 snR5 191-204 + 3' 191 27.924593 78.802707 53.36365 1.727245527 -0.026849 109 56 SH2283 2283 Phe2 tRNA 11 25 100.529368 185.024631 142.7769995 2.154658251 -0.226075 109 57 SH20208 20208 YDR059C spliced 28.765663 85.656222 57.2109425 1.757479102 -0.054432 109 58 SH13722 13722 MT COB 5' 25.825398 101.716822 25.825398 76.891424 51.358411 1.710611578 -0.151356 109 59 SH13146 13146 MT COX1 intronic 27.795808 104.754712 27.795808 77.958904 52.877356 1.723269731 -0.02478 109 60 SH534 534 Cys1 5' flank 29.299116 87.817594 58.558355 1.767588868 -0.065798 109 61 SH21292 21292 YPL175W spliced 28.629805 86.931727 57.780766 1.761783295 -0.081043 109 62 SH8265 8265 snoRNA cluster4 snR67 33.224464 120.37219 33.224464 88.147726 60.686095 1.783089193 0.096676 109 63 SH21533 21533 copy of SH3753 42.444288 91.969126 67.206707 1.827412616 0.220505 109 64 SH2575 2575 Pro2 3' flank 26.671091 78.261585 52.466338 1.719880753 -0.106485 109 65 SH11106 11106 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2416 2429 29.203647 75.080789 52.142218 1.717189501 0.105977 109 66 SH911 911 Glu3 66-72 + 3' flank 66 27.191175 76.104179 51.647677 1.713050793 -0.042236 109 67 SH2687 2687 Pro4 101-102 + 3' flank 101 27.452215 66.141302 46.7967585 1.670215772 0.110803 109 68 SH6854 6854 snR56 5' 30.009149 83.19852 56.6038345 1.752845852 0.049837 109 69 SH4481 4481 U3b (snR17b) 5' 27.903889 69.636186 48.7700375 1.68815309 0.092821 109 70 SH5000 5000 snR10 snR10 31 47 30.619972 82.486027 56.5529995 1.752455644 0.090111 109 71 SH8437 8437 snoRNA cluster 5 intergenic/snR128 28.400203 111.46256 28.400203 84.062357 56.23128 1.74997797 -0.059718 109 72 SH2932 2932 Pro8 3' flank 69.7558 116.897679 93.3267395 1.970006093 0.198494 109 73 SH10737 10737 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 571 586 34.801521 86.395799 60.59866 1.782463021 0.181048 109 74 SH13009 13009 MT COX1 COX1ai2 27.190254 106.43066 27.190254 80.240406 53.71533 1.730098248 -0.095162 109 75 SH11834 11834 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6056 6069 6855.967104 4504.634109 5680.300607 3.75437132 0.075771 109 76 SH16204 16204 YDR381C-A_4_1238839_1238301_INTRON_27_220 3' exon 31.62784 109.079698 31.62784 78.451858 55.039849 1.740677234 0.211027 109 77 SH10056 10056 RUF6 RUF6 126 143 28.969199 87.654138 58.3116685 1.765755468 -0.078072 109 78 SH16795 16795 YGL103W_7_310965_311925_INTRON_50_560 3' exon 2513.618779 5654.983944 2513.618779 3142.365165 2827.991972 3.451478172 -0.660148 109 79 SH11747 11747 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5621 5638 993.634852 821.454564 907.544708 2.957868029 0.231849 109 80 SH5534 5534 snR33 5' 28.651225 78.418224 53.5347245 1.728635572 0.02645 109 81 SH598 598 Gln1 tRNA 31 47 28.998313 99.787723 64.393018 1.80883878 -0.277287 109 82 SH12274 12274 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.147627 113.735795 30.147627 84.588168 57.3678975 1.758668934 0.030374 109 83 SH16101 16101 YDR059C_4_569765_569229_INTRON_48_137 intron 26.680541 97.886753 26.680541 72.206212 49.4433765 1.694108121 -0.028293 109 84 SH2182 2182 Met2 tRNA 41 55 26.68382 76.396958 51.540389 1.712147692 -0.082193 109 85 SH12664 12664 MT_15S MT_15S 72.079372 203.470366 72.079372 132.390994 102.235183 2.009600379 0.00109 109 86 SH20139 20139 YDL108W spliced 34.900491 96.457903 65.679197 1.817427834 -0.040238 109 87 SH21035 21035 YMR125W spliced 57.902795 107.952534 82.9276645 1.918699434 0.169841 109 88 SH20359 20359 YER131W spliced 39.637551 95.380608 67.5090795 1.829362186 0.089089 109 89 SH12034 12034 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7056 7085 28.982018 76.49682 52.739419 1.722135341 0.072916 109 90 SH9100 9100 snR14 / U4 RNA U4 116 135 27.003606 72.803497 49.9035515 1.698131454 -0.013019 109 91 SH18242 18242 YML026C_13_223828_222987_INTRON_48_448 intron/exon 26.474821 98.368238 26.474821 72.893417 49.684119 1.696217593 -0.052289 109 92 SH13845 13845 MT COB Cytbi2 25.563563 88.181769 25.563563 63.618206 44.5908845 1.649246087 0.014689 109 93 SH20475 20475 YGL189C spliced 31.409993 134.527025 82.968509 1.918913286 -0.811402 109 94 SH5860 5860 snR35 snR35 486 501 31.263655 102.989177 67.126416 1.82689346 -0.26734 109 95 SH5929 5929 snR36 snR36 101 117 31.428107 114.733058 73.0805825 1.863802 -0.482888 109 96 SH16757 16757 YGL087C_7_346902_346404_INTRON_12_96 5' exon 29.398205 125.394306 29.398205 96.996101 63.197153 1.800697514 -0.215062 109 97 SH18266 18266 YML056C_13_164176_162194_INTRON_461_868 intron 29.445733 125.136757 29.445733 96.691024 63.0683785 1.799811665 -0.208026 109 98 SH8846 8846 LSR1 / U2 RNA U2 871 887 29.60819 81.859516 55.733853 1.746119068 0.045354 109 99 SH2885 2885 Pro8 5' flank 27.625535 73.418785 50.52216 1.70348191 0.022756 109 100 SH2938 2938 Ser1 5' flank 27.560472 71.823103 49.6917875 1.696284619 0.0393 109 101 SH16948 16948 YGR027C_7_534779_534126_INTRON_1_312 intron 25.403093 97.030028 25.403093 72.626935 49.015014 1.690329131 -0.128355 109 102 SH2270 2270 Phe2 5' flank 28.065081 77.670109 52.867595 1.723189554 -0.002899 109 103 SH5843 5843 snR35 snR35 401 420 28.737965 80.1526 54.4452825 1.735960256 0.010243 109 104 SH8083 8083 snoRNA cluster 2 3' 29.089993 105.484902 29.089993 77.394909 53.242451 1.72625804 0.068237 110 2 SH12030 12030 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS/3'flank 7036 7056 28.207168 80.418378 54.312773 1.734901977 -0.028198 110 3 SH12905 12905 MT COX1 COX1ai2 27.823164 104.514047 27.823164 77.690883 52.7570235 1.722280285 -0.019478 110 4 SH9655 9655 RUF4 RUF4 51 65 34.384692 94.372413 64.3785525 1.808741208 -0.008579 110 5 SH14783 14783 MT ORF11; tRNA Leu; tRNA Gln 3' 27.782136 98.3147 27.782136 71.532564 49.65735 1.695983539 0.058617 110 6 SH429 429 Asp1 5' flank 25.53005 79.585123 52.5575865 1.720635414 -0.206548 110 7 SH15685 15685 YBR191W_2_606228_607098_INTRON_12_399 intron 42.749703 126.87865 42.749703 85.128947 63.939325 1.805768047 0.385816 110 8 SH20365 20365 YER133W spliced 29.254299 89.259645 59.256972 1.772739455 -0.093043 110 9 SH5360 5360 snR30 3' 27.211704 87.296212 57.253958 1.757805515 -0.178059 110 10 SH4880 4880 snR8 181-190 + 3' 181 25.255717 73.956064 49.6058905 1.69553325 -0.156963 110 11 SH14393 14393 MT 21S rRNA 21S rRNA3 116.338553 268.059682 116.338553 152.721129 134.529841 2.128818629 0.273894 110 12 SH355 355 Arg5 3' flank 29.223768 93.373653 61.2987105 1.787451339 -0.164147 110 13 SH10134 10134 RUF6 RUF6 516 530 29.320764 91.897339 60.6090515 1.782537488 -0.135058 110 14 SH17013 17013 YGR148C_7_788173_787307_INTRON_1_392 intron 27.162472 121.135753 27.162472 94.973281 61.0678765 1.785812819 -0.288324 110 15 SH13906 13906 MT COB exon3/cytbi3 26.648545 87.950693 26.648545 62.302148 44.4753465 1.64811934 0.113627 110 16 SH4694 4694 snR4 snR4 6 22 71.383811 118.352483 94.868147 1.977120418 0.197992 110 17 SH14613 14613 MT 21S rRNA Sce1 endonuc 29.711482 103.878859 29.711482 75.167377 52.4394295 1.719657958 0.137306 110 18 SH14749 14749 MT ORF11; tRNA Leu; tRNA Gln ORF11 47.68278 147.564594 47.68278 100.881814 74.282297 1.870885325 0.130161 110 19 SH12987 12987 MT COX1 COX1ai2 23.29969 89.483669 23.29969 67.183979 45.2418345 1.655540207 -0.214055 110 20 SH21192 21192 YOL120C spliced 31.467713 82.815446 57.1415795 1.756952241 0.120497 110 21 SH9868 9868 RUF5-1 RUF5-1 146 163 27.637827 76.784471 52.211149 1.717763251 -0.020321 110 22 SH6892 6892 snR56 3' 28.85232 71.92009 50.386205 1.702311649 0.126222 110 23 SH21914 21914 copy of SH19997 67.422193 114.685109 91.053651 1.959297364 0.200874 110 24 SH17696 17696 YKL006W_11_431544_432358_INTRON_130_527 intron 28.569128 95.454534 28.569128 67.885406 48.227267 1.683292652 0.162628 110 25 SH15368 15368 YBL027W_2_168385_169338_INTRON_3_386 intron 30.202384 111.734626 30.202384 82.532242 56.367313 1.751027333 0.070866 110 26 SH16782 16782 YGL103W_7_310965_311925_INTRON_50_560 intron 30.192927 113.540089 30.192927 84.347162 57.2700445 1.757927521 0.036797 110 27 SH5573 5573 snR33 snR33 151 170 30.882482 86.763625 58.8230535 1.769547565 0.023324 110 28 SH16728 16728 YGL033W_7_435621_436347_INTRON_56_125 3' exon 26.883513 104.427205 26.883513 78.543692 52.7136025 1.721922697 -0.095141 110 29 SH3275 3275 Thr2 5' flank 26.756577 88.298512 57.5275445 1.759875837 -0.221269 110 30 SH11916 11916 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6466 6481 130.994964 151.551584 141.273274 2.15006001 0.426042 110 31 SH16601 16601 YFL034C-A_6_64931_64242_INTRON_13_333 3' exon 30.611705 112.165694 30.611705 82.553989 56.582847 1.752684795 0.088476 110 32 SH19912 19912 YAL003W spliced 27.720179 84.553668 56.1369235 1.749248608 -0.111217 110 33 SH17461 17461 YIL148W_9_68708_69528_INTRON_9_442 intron 27.066621 108.470515 27.066621 82.403894 54.7352575 1.738267166 -0.130387 110 34 SH12560 12560 MT_15S MT_15S 556.306607 1251.617939 556.306607 696.311332 626.3089695 2.796788631 -0.263512 110 35 SH18788 18788 YNL301C_14_64561_63569_INTRON_113_544 intron 26.323679 95.341755 26.323679 70.018076 48.1708775 1.682784558 -0.024697 110 36 SH8555 8555 snR19 / U1 RNA U1 271 287 30.452099 74.162974 52.3075365 1.718564267 0.197166 110 37 SH7598 7598 snR189 snR189 61 75 39.925969 100.040714 69.9833415 1.844994675 -0.003337 110 38 SH19313 19313 YPL198W_16_173151_174701_INTRON_12_420 intron 26.997655 108.554269 26.997655 82.556614 54.7771345 1.73859931 -0.137048 110 39 SH720 720 Gln3 3' flank 31.973988 79.936463 55.9552255 1.74784065 0.196595 110 40 SH18457 18457 YMR143W_13_551927_552902_INTRON_25_568 intron 31.588993 118.496207 31.588993 87.907214 59.7481035 1.776324125 0.033342 110 41 SH10682 10682 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 296 311 42.869813 113.455024 78.1624185 1.892997989 -0.199273 110 42 SH15985 15985 YDL136W_4_217600_218367_INTRON_4_408 intron 26.69282 97.526047 26.69282 71.833227 49.2630235 1.692521063 -0.022438 110 43 SH8968 8968 snR17a / U3a U3a 126 145 26.971799 74.318163 50.644981 1.704536413 -0.035048 110 44 SH2091 2091 Lys4 3' flank 29.364868 92.433747 60.8993075 1.784612354 -0.142049 110 45 SH19867 19867 Negative Control 29.18831 87.740349 58.4643295 1.766890973 -0.069508 110 46 SH20438 20438 YGL087C spliced 28.567882 95.172909 61.8703955 1.791482892 -0.224054 110 47 SH17758 17758 YKL157W_11_154993_158183_INTRON_282_664 intron 25.577298 106.235524 25.577298 81.658226 53.617762 1.729308683 -0.227923 110 48 SH9658 9658 RUF4 RUF4 66 80 46.063055 102.958239 74.510647 1.872218335 0.059217 110 49 SH1515 1515 Leu3 tRNA-intron 46 62 25.494736 76.39227 50.943503 1.707088805 -0.169923 110 50 SH14262 14262 MT VAR1 includes 5’ processing site 5' 28.21239 111.337184 28.21239 84.124794 56.168592 1.749493537 -0.072963 110 51 SH13206 13206 MT COX1 COX1-ai4 26.705149 109.531007 26.705149 83.825858 55.2655035 1.742454131 -0.172849 110 52 SH5667 5667 snR34 snR34 256 273 27.564322 81.090603 54.3274625 1.735019421 -0.07997 110 53 SH21302 21302 YPL218W spliced 28.276123 74.221036 51.2485795 1.709681832 0.056695 110 54 SH7159 7159 snR63 3' 28.466129 94.989139 61.727634 1.790479631 -0.225839 110 55 SH19811 19811 Negative Control 30.580342 86.106073 58.3432075 1.765990301 0.021934 110 56 SH12585 12585 MT_15S MT_15S 30.11264 106.361676 30.11264 77.249036 53.680838 1.729819287 0.135226 110 57 SH6939 6939 snR58 snR58 56 68 31.791013 82.079407 56.93521 1.755380927 0.147988 110 58 SH8613 8613 snR19 / U1 RNA U1 561 577 26.27097 73.834794 50.052882 1.699429089 -0.079488 110 59 SH17707 17707 YKL081W_11_282533_284097_INTRON_206_531 intron 47.849438 151.888983 47.849438 105.039545 76.4444915 1.883346196 0.051398 110 60 SH1271 1271 Ile2 tRNA-intron 51 66 27.794599 80.144401 53.9695 1.732148395 -0.052543 110 61 SH19342 19342 YPL241C_16_96258_95372_INTRON_26_105 3' exon 28.210296 114.970673 28.210296 87.760377 57.9853365 1.763318182 -0.115476 110 62 SH2094 2094 Lys4 3' flank 28.415224 68.432864 48.424044 1.685061056 0.144518 110 63 SH10119 10119 RUF6 RUF6 441 457 28.449635 83.054799 55.752217 1.746262142 -0.044368 110 64 SH3653 3653 Val2 tRNA 6 18 30.74057 85.281403 58.0109865 1.763510251 0.043816 110 65 SH463 463 Asp1 3' flank 33.08615 94.981181 64.0336655 1.806408363 -0.05454 110 66 SH13825 13825 MT COB Cytbi2 37.91492 136.122437 37.91492 99.207517 68.5612185 1.836078527 -0.028608 110 67 SH8111 8111 snoRNA cluster 3; 5' 26.784275 97.504273 26.784275 71.719998 49.2521365 1.692425074 -0.014337 110 68 SH9634 9634 RUF4 5' 38.578085 99.532153 69.055119 1.839195878 -0.021081 110 69 SH12404 12404 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.155932 132.044866 34.155932 98.888934 66.522433 1.822968125 -0.109215 110 70 SH4240 4240 telomerase RNA telomerase 236 250 37.090133 90.299199 63.694666 1.804103065 0.145751 110 71 SH11565 11565 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4711 4726 371.635435 307.126963 339.381199 2.53068778 0.534795 110 72 SH7060 7060 snR62 91-100 + 3' 91 27.652359 76.653245 52.152802 1.717277647 -0.017618 110 73 SH18214 18214 YML025C_13_225365_224406_INTRON_28_126 intron 26.878724 94.600644 26.878724 68.72192 47.800322 1.679430822 0.033417 110 74 SH1050 1050 Gly3 5' flank - tRNA3 3 28.431234 81.317755 54.8744945 1.739370533 -0.024425 110 75 SH2334 2334 Phe3 5' flank - tRNA13 13 52.999525 106.976362 79.9879435 1.903024531 0.106296 110 76 SH19154 19154 YPL075W_16_412249_415357_INTRON_9_759 intron 31.113985 113.596793 31.113985 83.482808 57.2983965 1.758142468 0.092951 110 77 SH17532 17532 YJL177W_10_90783_91654_INTRON_310_626 exon/intron 28.935498 110.55734 28.935498 82.621842 55.77867 1.746468155 -0.007229 110 78 SH4129 4129 SRP RNA SRP RNA 536 548 207.195048 225.360609 216.2778285 2.335012 0.309157 110 79 SH7354 7354 snR68 5' - 10 -9 10 28.246783 71.165615 49.706199 1.696410554 0.095494 110 80 SH234 234 Arg3 26-40 26 40 30.520401 83.253716 56.8870585 1.755013478 0.071421 110 81 SH17351 17351 YIL018W_9_316766_317930_INTRON_5_404 intron 26.196969 94.435965 26.196969 69.238996 47.7179825 1.678682074 -0.023252 110 82 SH12246 12246 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.002775 113.293036 31.002775 83.290261 57.146518 1.756989773 0.09173 110 83 SH19982 19982 YBL091C-A spliced 31.515161 88.735768 60.1254645 1.779058445 0.015698 110 84 SH11350 11350 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3636 3651 130.818667 149.587886 140.2032765 2.146758163 0.44682 110 85 SH920 920 Glu3 3' flank 26.799989 74.569232 50.6846105 1.704876113 -0.050591 110 86 SH4061 4061 SRP RNA SRP RNA 196 213 42.415822 116.933059 79.6744405 1.901319022 -0.269642 110 87 SH21068 21068 YMR225C spliced 25.747013 71.913799 48.830406 1.688690335 -0.092989 110 88 SH7227 7227 snR65 5' 131.419304 180.202712 155.811008 2.192598137 0.135459 110 89 SH21233 21233 YOR293W spliced 29.017522 81.617543 55.3175325 1.7428628 0.010349 110 90 SH13463 13463 MT COX1 intronic 29.296674 112.052934 29.296674 83.75626 56.526467 1.752251842 0.002491 110 91 SH18341 18341 YML124C_13_23684_22049_INTRON_26_323 intron 28.983081 108.023571 28.983081 80.04049 54.5117855 1.736490407 0.027647 110 92 SH1538 1538 Leu3 3' flank 35.248973 85.106069 60.177521 1.779434293 0.22251 110 93 SH21923 21923 copy of SH20203 70.621329 145.31174 107.9665345 2.033289162 -0.191507 110 94 SH8641 8641 snR19 / U1 RNA 3' 27.770496 82.533444 55.15197 1.74156103 -0.083587 110 95 SH11538 11538 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4576 4589 554.560163 415.706325 485.133244 2.685861036 0.557873 110 96 SH15665 15665 YBR189W_2_604466_605466_INTRON_8_420 intron 27.376418 79.16915 27.376418 52.792732 40.084575 1.602977283 0.333012 110 97 SH1533 1533 Leu3 3' flank 29.696027 84.730045 57.213036 1.757494994 0.00758 110 98 SH5146 5146 snR11 3' 25.518201 70.902305 48.210253 1.683139411 -0.096587 110 99 SH16969 16969 YGR034W_7_555923_556666_INTRON_20_496 intron 27.46255 104.754903 27.46255 78.292353 52.8774515 1.723270516 -0.05178 110 100 SH4097 4097 SRP RNA SRP RNA 376 390 31.201479 88.044669 59.623074 1.775414363 0.014405 110 101 SH20615 20615 YHR097C spliced 41.966949 106.765059 74.366004 1.871374446 -0.094245 110 102 SH20818 20818 YKL190W spliced 27.604811 75.475606 51.5402085 1.712146171 -0.00536 110 103 SH7641 7641 snoRNA cluster1 5' 1 20 28.447149 89.567378 59.0072635 1.770905474 -0.135814 110 104 SH18090 18090 YLR367W_12_855877_857316_INTRON_698_1180 5' exon 28.80657 107.027004 28.80657 79.220434 54.013502 1.732502336 0.026448 111 2 SH16372 16372 YER003C_5_159117_157735_INTRON_32_124 intron 27.046847 98.089951 27.046847 72.043104 49.5449755 1.694999618 0.000137 111 3 SH19587 19587 AEP2/ATP13 2.1 29.979603 79.109768 54.5446855 1.736752442 0.103052 111 4 SH17156 17156 YHR012W_8_129473_130440_INTRON_49_167 3' exon 29.683349 126.415092 29.683349 97.731743 63.707546 1.804190876 -0.213831 111 5 SH11968 11968 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6726 6743 21323.02201 10335.17987 15829.10094 4.199456249 0.240825 111 6 SH13097 13097 MT COX1 COX1ai3 29.806128 110.969087 29.806128 82.162959 55.9845435 1.748068141 0.054204 111 7 SH4852 4852 snR8 snR8 41 57 29.76667 78.731664 54.249167 1.734393074 0.094418 111 8 SH18177 18177 YLR448W_12_1028848_1029762_INTRON_16_399 intron 29.702404 117.893162 29.702404 89.190758 59.446581 1.774126882 -0.071503 111 9 SH11105 11105 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2411 2426 36.214957 88.863736 62.5393465 1.796153339 0.157882 111 10 SH3395 3395 Thr4 61-72 + 3' flank 61 76.998518 145.491623 111.2450705 2.046280776 -0.101162 111 11 SH21705 21705 copy of SH11080 11172.64775 5418.874183 8295.760967 3.91885623 0.419235 111 12 SH12227 12227 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 45.543096 149.112473 45.543096 104.569377 75.0562365 1.875386784 0.017993 111 13 SH10971 10971 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1741 1759 222.779534 245.137488 233.958511 2.369138849 0.259348 111 14 SH13678 13678 MT ORF 5 (hypothetical) 5' 29.210365 108.311426 29.210365 80.101061 54.655713 1.737635564 0.041608 111 15 SH18175 18175 YLR448W_12_1028848_1029762_INTRON_16_399 intron 29.152303 119.228039 29.152303 91.075736 60.1140195 1.778975768 -0.128877 111 16 SH19009 19009 YOR182C_15_678792_678190_INTRON_4_414 intron 32.945474 168.38901 32.945474 136.443536 84.694505 1.927855234 -0.799187 111 17 SH5904 5904 snR36 5' 32.534453 139.86302 86.1987365 1.9355009 -0.860153 111 18 SH1 1 Ala1 5' flank 35.010606 104.548664 69.779635 1.843728693 -0.202339 111 19 SH5766 5766 snR35 snR35 16 32 31.917431 81.206651 56.562041 1.752525072 0.169837 111 20 SH8807 8807 LSR1 / U2 RNA U2 676 692 28.774924 80.323564 54.549244 1.736788736 0.010531 111 21 SH14443 14443 MT 21S rRNA 21S rRNA3 27.254373 102.667399 27.254373 76.413026 51.8336995 1.714612207 -0.041791 111 22 SH15473 15473 YBL091C-A_2_46858_46559_INTRON_35_122 5' exon 55.12881 165.234715 55.12881 111.105905 83.1173575 1.919691728 0.0675 111 23 SH12103 12103 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7401 7418 31.340661 80.198427 55.769544 1.746397093 0.164757 111 24 SH12319 12319 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.214918 111.380151 28.214918 84.165233 56.1900755 1.749659616 -0.073275 111 25 SH21668 21668 copy of SH9403 29.729221 79.20166 54.4654405 1.73612102 0.086087 111 26 SH10786 10786 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 816 836 66.909221 150.876917 108.893069 2.037000238 -0.317526 111 27 SH10544 10544 RUF8 RUF8 646 666 25.544097 62.040328 43.7922125 1.641396887 0.038788 111 28 SH5988 5988 snR36 3' 28.150818 84.458791 56.3048045 1.750545455 -0.081046 111 29 SH3828 3828 RNaseP RNaseP 106 118 43.852578 103.256546 73.554562 1.866609614 0.011199 111 30 SH19460 19460 CYC1 27.695534 77.389816 52.542675 1.720512179 -0.024254 111 31 SH5492 5492 snR32 snR32 121 133 36.570901 94.264344 65.4176225 1.815694756 0.046435 111 32 SH6881 6881 snR56 snR56 36 53 26.007342 74.588252 50.297797 1.701548964 -0.108654 111 33 SH19863 19863 Negative Control 33.345718 91.383436 62.364577 1.794937981 0.030552 111 34 SH5654 5654 snR34 snR34 191 212 26.618606 71.506947 49.0627765 1.690752122 -0.023431 111 35 SH16844 16844 YGL178W_7_167356_170575_INTRON_4_643 intron 27.457077 113.637757 27.457077 87.18068 57.3188785 1.758297684 -0.159819 111 36 SH7236 7236 snR65 5' 41.909493 102.025267 71.96738 1.857135692 -0.003314 111 37 SH2420 2420 Phe4 3' flank 31.977293 83.539212 57.7582525 1.761614045 0.128536 111 38 SH10548 10548 RUF8 RUF8 666 687 27.043561 69.763948 48.4037545 1.68487905 0.030751 111 39 SH16343 16343 YDR500C_4_1450856_1450201_INTRON_8_396 intron 27.370418 113.209134 27.370418 86.838716 57.104567 1.756670843 -0.16184 111 40 SH12428 12428 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.067273 103.17488 28.067273 76.107607 52.08744 1.716733013 0.017595 111 41 SH7606 7606 snR189 snR189 101 118 28.570009 70.60163 49.5858195 1.695357495 0.125041 111 42 SH11589 11589 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4831 4846 278.630015 227.042508 252.8362615 2.40283936 0.663079 111 43 SH4359 4359 telomerase RNA telomerase 831 847 28.879081 82.457674 55.6683775 1.745608564 -0.008915 111 44 SH18400 18400 YMR125W_13_517538_520445_INTRON_26_347 intron 33.677064 124.678973 33.677064 92.001909 62.8394865 1.798232627 0.025307 111 45 SH8831 8831 LSR1 / U2 RNA U2 796 813 26.53928 80.942894 53.741087 1.730306446 -0.149548 111 46 SH9595 9595 RUF3 RUF3 361 382 27.866475 69.780223 48.823349 1.688627566 0.088254 111 47 SH10128 10128 RUF6 RUF6 486 502 39.683703 83.443894 61.5637985 1.789325408 0.363851 111 48 SH14765 14765 MT ORF11; tRNA Leu; tRNA Gln ORF11 24.336568 87.782868 24.336568 64.4463 44.391434 1.647299174 -0.090394 111 49 SH13505 13505 MT COX1 intronic 31.020477 126.331878 31.020477 96.311401 63.665939 1.803907149 -0.137884 111 50 SH6865 6865 snR56 5' 40.964779 92.618193 66.791486 1.824721106 0.176808 111 51 SH20358 20358 YER117W spliced 28.766169 83.22187 55.9940195 1.748141644 -0.025532 111 52 SH9674 9674 RUF4 RUF4 146 161 31.963073 88.107198 60.0351355 1.778405495 0.045583 111 53 SH13712 13712 MT tRNAGlu (and 5' processing site for COB) 3' 27.852233 104.966204 27.852233 78.113971 52.983102 1.724137381 -0.022948 111 54 SH12818 12818 MT COX1 COX1ai1 25.753131 99.44719 25.753131 74.694059 50.223595 1.700907796 -0.128931 111 55 SH15316 15316 YAL003W_1_142172_143158_INTRON_81_446 intron 35.329907 129.803982 35.329907 95.474075 65.401991 1.81559097 -0.008968 111 56 SH14668 14668 MT 21S rRNA 21S rRNA4 27.956666 101.991682 27.956666 75.035016 51.495841 1.711772155 0.024366 111 57 SH15704 15704 YBR220C_2_663261_662457_INTRON_302_722 intron 27.562537 104.400007 27.562537 77.83747 52.7000035 1.721810644 -0.039098 111 58 SH6380 6380 snR43 snR43 141 159 26.669984 77.817365 52.2436745 1.718033715 -0.100869 111 59 SH1807 1807 Leu8 tRNA 61 77 32.328011 83.318363 57.823187 1.762102025 0.147231 111 60 SH21835 21835 copy of SH16600 32.038442 85.691636 58.865039 1.769857436 0.09174 111 61 SH18724 18724 YNL147W_14_350937_351380_INTRON_19_138 5' exon 32.490531 116.903159 32.490531 85.412628 58.9515795 1.770495446 0.115539 111 62 SH7794 7794 snoRNA cluster1 snR75 28.488629 102.25897 28.488629 74.770341 51.629485 1.712897793 0.06342 111 63 SH16708 16708 YGL031C_7_438393_437938_INTRON_1_456 intron 33.200273 124.347451 33.200273 92.147178 62.6737255 1.797085511 0.009915 111 64 SH1926 1926 Lys1 3' flank 30.857921 96.347053 63.602487 1.803474098 -0.143127 111 65 SH9288 9288 RUF1 RUF1 16 33 28.432206 78.255199 53.3437025 1.727083156 0.014075 111 66 SH12962 12962 MT COX1 COX1ai2 28.492517 117.525578 28.492517 90.033061 59.262789 1.772782086 -0.141704 111 67 SH547 547 Cys1 tRNA 36 52 31.112627 75.174682 53.1436545 1.725451416 0.224032 111 68 SH10300 10300 RUF7 RUF7 111 130 27.960994 76.426185 52.1935895 1.717617166 0.006265 111 69 SH5141 5141 snR11 3' 29.283972 90.879376 60.081674 1.778742025 -0.119506 111 70 SH20453 20453 YGL137W spliced 27.15973 80.333179 53.7464545 1.73034982 -0.098436 111 71 SH12481 12481 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S/3' flank 27.329344 104.062014 27.329344 77.73267 52.531007 1.720415726 -0.053758 111 72 SH20078 20078 YCR031C spliced 29.348627 76.969836 53.1592315 1.725578694 0.090429 111 73 SH21530 21530 copy of SH3750 28.378448 86.638541 57.5084945 1.759731998 -0.091384 111 74 SH5728 5728 snR34 3' 45.361682 100.092538 72.72711 1.86169633 0.103322 111 75 SH21736 21736 copy of SH12341 29.865318 80.409182 55.13725 1.741445102 0.079544 111 76 SH4234 4234 telomerase RNA telomerase 206 222 28.509467 70.34988 49.4296735 1.693987742 0.124383 111 77 SH7044 7044 snR62 snR62 11 32 26.608475 71.73427 49.1713725 1.691712331 -0.02721 111 78 SH11579 11579 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4781 4798 35.478253 88.168328 61.8232905 1.791152116 0.156269 111 79 SH14881 14881 MT tRNA Ala tRNA 30.426114 125.754732 30.426114 96.328618 63.377366 1.801934186 -0.158381 111 80 SH21856 21856 copy of SH17801 27.970543 86.411287 57.190915 1.757327045 -0.116034 111 81 SH15711 15711 YBR220C_2_663261_662457_INTRON_302_722 intron 46.226231 150.694103 46.226231 105.467872 75.8470515 1.879938703 0.0134 111 82 SH12379 12379 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.122011 118.597702 33.122011 86.475691 59.798851 1.776692839 0.122168 111 83 SH4649 4649 snR3 snR3 161 176 29.364852 86.775173 58.0700125 1.76395192 -0.044325 111 84 SH20766 20766 YJR145C spliced 29.912856 99.230843 64.5718495 1.810043226 -0.229601 111 85 SH594 594 Gln1 tRNA 11 28 29.785583 70.408942 50.0972625 1.699813995 0.207476 111 86 SH5583 5583 snR33 3' 26.833364 65.450688 46.142026 1.66409666 0.076965 111 87 SH347 347 Arg5 71-72 + 3' flank 71 3' flank 28.567676 66.564791 47.5662335 1.677298763 0.181381 111 88 SH4520 4520 U3b (snR17b) U3b 156 172 65.572598 115.500392 90.536495 1.956823677 0.15985 111 89 SH2686 2686 Pro4 96-102 + 3' flank 96 31.210221 75.16871 53.1894655 1.725825626 0.230013 111 90 SH14369 14369 MT ORF9 and ORF10 (hypothetical) intergenic 26.856242 101.326 26.856242 75.469758 51.163 1.708956002 -0.058072 111 91 SH7679 7679 snoRNA cluster1 intergenic 33.79302 135.894486 33.79302 103.101466 68.447243 1.83535596 -0.203056 111 92 SH3811 3811 RNaseP RNaseP 21 38 31.40657 74.85787 53.13222 1.725357962 0.245978 111 93 SH19749 19749 Negative Control 28.82377 69.240193 49.0319815 1.690479444 0.160755 111 94 SH17199 17199 YHR021C_8_148660_147862_INTRON_4_553 intron 25.864753 78.055778 25.864753 53.191025 39.527889 1.596903621 0.222758 111 95 SH8538 8538 snR19 / U1 RNA U1 186 206 27.193954 108.088803 67.6413785 1.83021245 -0.486887 111 96 SH6021 6021 snR37 snR37 21 43 26.847887 85.740692 56.2942895 1.750464342 -0.185418 111 97 SH2731 2731 Pro5 tRNA-exon/intron 36 48 33.598164 88.301033 60.9495985 1.784970849 0.106676 111 98 SH7701 7701 snoRNA cluster1 intergenic 27.500217 98.859311 27.500217 72.359094 49.9296555 1.69835857 0.027951 111 99 SH11072 11072 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2246 2264 31.618486 70.472739 51.0456125 1.707958419 0.319087 111 100 SH19518 19518 ACT1 37.433634 82.995198 60.214416 1.779700479 0.324909 111 101 SH9148 9148 snR7 U5 RNA U5 11 26 42.775884 107.949187 75.3625355 1.877155501 -0.100253 111 102 SH2498 2498 Pro1 5' flank 27.351735 68.316886 47.8343105 1.679739518 0.072685 111 103 SH16865 16865 YGL187C_7_150529_149708_INTRON_1_342 intron 28.110749 103.074718 28.110749 75.963969 52.037359 1.716315247 0.022403 111 104 SH4002 4002 SRP RNA 5' 35.699803 95.848327 65.774065 1.818054683 -0.00801 112 2 SH17458 17458 YIL148W_9_68708_69528_INTRON_9_442 intron 27.582707 107.418746 27.582707 80.836039 54.209373 1.734074384 -0.075566 112 3 SH1282 1282 Ile2 tRNA 106 120 33.583239 85.19746 59.3903495 1.773715881 0.163714 112 4 SH6911 6911 snR58 5' 26.690728 70.319644 48.505186 1.685788174 -0.002153 112 5 SH15095 15095 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 28.840945 103.353789 28.840945 75.512844 52.1768945 1.717478227 0.076685 112 6 SH7579 7579 snR189 5' 27.210281 78.648382 52.9293315 1.723696409 -0.07371 112 7 SH13502 13502 MT COX1 intronic 29.984676 115.782149 29.984676 86.797473 58.3910745 1.766346467 -0.016766 112 8 SH5198 5198 snR13 3' 27.96092 77.439697 52.7003085 1.721813158 -0.00693 112 9 SH19310 19310 YPL198W_16_173151_174701_INTRON_12_420 intron 25.263022 93.579861 25.263022 69.316839 47.2899305 1.674768676 -0.094241 112 10 SH6359 6359 snR43 snR43 36 48 26.387589 89.817861 58.102725 1.764196501 -0.264515 112 11 SH4185 4185 telomerase RNA 5' 29.767842 80.740942 55.254392 1.742366804 0.069262 112 12 SH18478 18478 YMR143W_13_551927_552902_INTRON_25_568 intron 25.734057 89.810204 25.734057 65.076147 45.405102 1.657104656 0.004088 112 13 SH16697 16697 YGL031C_7_438393_437938_INTRON_1_456 intron 39.293252 136.931219 39.293252 98.637967 68.9656095 1.838632579 0.012646 112 14 SH7265 7265 snR65 3' 26.009289 71.624415 48.816852 1.68856977 -0.069601 112 15 SH8861 8861 LSR1 / U2 RNA U2 946 958 32.775687 114.696649 73.736168 1.867680564 -0.44769 112 16 SH9289 9289 RUF1 RUF1 21 38 27.360766 95.631518 61.496142 1.788847871 -0.289274 112 17 SH16387 16387 YER007C-A_5_166884_166236_INTRON_12_114 3' exon 27.262343 95.198605 27.262343 68.936262 48.0993025 1.682138779 0.05772 112 18 SH19718 19718 Negative Control 29.40844 72.593941 51.0011905 1.707580314 0.152868 112 19 SH17517 17517 YJL136C_10_156971_156248_INTRON_25_484 intron 27.616659 103.057747 27.616659 76.441088 52.0288735 1.716244423 -0.017278 112 20 SH8748 8748 LSR1 / U2 RNA U2 381 393 28.29354 85.750658 57.022099 1.7560432 -0.086716 112 21 SH6568 6568 snR47 5' 28.973787 86.814629 57.894208 1.762635117 -0.062973 112 22 SH18604 18604 YNL069C_14_494998_493953_INTRON_29_477 intron 29.156862 115.182553 29.156862 87.025691 58.0912765 1.76411092 -0.058299 112 23 SH19783 19783 Negative Control 28.688161 77.855594 53.2718775 1.726498003 0.036087 112 24 SH6990 6990 snR60 snR60 31 48 34.710276 95.407171 65.0587235 1.813305538 -0.022668 112 25 SH4689 4689 snR4 5' 27.226253 67.097497 47.161875 1.673591063 0.081112 112 26 SH15353 15353 YBL026W_2_170585_171000_INTRON_55_182 intron/exon 44.176645 145.187629 44.176645 102.010984 73.0938145 1.863880627 0.042125 112 27 SH16015 16015 YDL137W_4_216158_217074_INTRON_1_332 intron/exon 37.967867 144.779043 37.967867 107.811176 72.8895215 1.862665099 -0.199004 112 28 SH16954 16954 YGR029W_7_543547_544199_INTRON_87_169 exon/intron 27.585186 110.451706 27.585186 83.86652 55.725853 1.746056725 -0.112245 112 29 SH141 141 Arg1 3' flank 27.652016 81.123228 54.387622 1.73550007 -0.074388 112 30 SH5306 5306 snR30 snR30 381 401 25.332169 71.276987 48.304578 1.683988292 -0.115736 112 31 SH2628 2628 Pro3 tRNA 91 103 47.482548 103.808905 75.6457265 1.878784398 0.068541 112 32 SH15235 15235 MT COX3 3' 25.39815 99.07205 25.39815 74.6739 50.036025 1.699282801 -0.155401 112 33 SH19118 19118 YPL031C_16_493033_492014_INTRON_18_119 intron 27.710018 105.977409 27.710018 79.267391 53.4887045 1.728262079 -0.047269 112 34 SH7267 7267 snR65 3' 25.766702 74.233462 50.000082 1.698970717 -0.12198 112 35 SH16994 16994 YGR118W_7_726968_727725_INTRON_66_385 intron 28.309882 117.763831 28.309882 90.453949 59.3819155 1.773654203 -0.157526 112 36 SH5510 5510 snR32 3' 28.541823 77.965484 53.2536535 1.726349408 0.025039 112 37 SH9139 9139 snR7 U5 RNA 5' 26.577 67.015096 46.796048 1.670209178 0.035811 112 38 SH794 794 Glu1 5' flank - tRNA2 2 34.008912 84.393086 59.200999 1.772329035 0.195247 112 39 SH3939 3939 RNase MRP RNaseMRP 111 132 27.406265 94.470483 60.938374 1.784890862 -0.268154 112 40 SH13260 13260 MT COX1 COX1-ai4 27.10688 99.493674 27.10688 73.386794 50.246837 1.701108728 -0.013326 112 41 SH9327 9327 RUF1 RUF1 211 227 46.093896 108.926261 77.5100785 1.889358177 -0.054374 112 42 SH21690 21690 copy of SH10450 30.580373 85.431806 58.0060895 1.763473588 0.034097 112 43 SH717 717 Gln3 3' flank 32.855017 92.669208 62.7621125 1.797697553 -0.010491 112 44 SH13858 13858 MT COB Cytbi2 28.402167 97.917732 28.402167 70.515565 49.458866 1.694244155 0.114864 112 45 SH13118 13118 MT COX1 COX1ai3 28.13842 100.46232 28.13842 73.3239 50.73116 1.705274793 0.059423 112 46 SH11733 11733 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5551 5564 29976.01445 13419.89506 21697.95475 4.336418799 0.272846 112 47 SH10016 10016 RUF6 5' 39.026864 97.818292 68.422578 1.835199433 0.024261 112 48 SH10175 10175 RUF6 RUF6 721 733 30.144782 76.082942 53.113862 1.725207881 0.152464 112 49 SH4326 4326 telomerase RNA telomerase 666 684 35.030212 101.898522 68.464367 1.835464597 -0.14892 112 50 SH12326 12326 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.721441 102.001053 27.721441 75.279612 51.5005265 1.711811669 0.005187 112 51 SH14145 14145 MT COB intronic 28.939738 102.009803 28.939738 74.070065 51.5049015 1.711848561 0.102442 112 52 SH10643 10643 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 101 124 27.260778 83.837549 55.5491635 1.744677523 -0.134188 112 53 SH12425 12425 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 46.64548 151.979508 46.64548 106.334028 76.489754 1.883603264 0.004549 112 54 SH20180 20180 YDL189W spliced 27.779695 79.273893 53.526794 1.728571232 -0.04262 112 55 SH7894 7894 snoRNA cluster1 intergenic 30.325417 118.687863 30.325417 89.362446 59.8439315 1.777020117 -0.046695 112 56 SH10054 10054 RUF6 RUF6 116 132 30.297464 82.331792 56.314628 1.75062122 0.078835 112 57 SH11501 11501 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4391 4406 29.973129 79.048271 54.5107 1.736481759 0.103424 112 58 SH5225 5225 snR30 5' 26.877818 82.709256 54.793537 1.738729336 -0.147279 112 59 SH15614 15614 YBR181C_2_592732_591670_INTRON_7_358 intron 30.460869 117.305763 30.460869 87.844894 59.1528815 1.771975905 -0.014234 112 60 SH5774 5774 snR35 snR35 56 70 30.126721 92.060593 61.093657 1.785996122 -0.10151 112 61 SH21506 21506 copy of SH2798 30.451042 85.860526 58.155784 1.764592915 0.020681 112 62 SH13160 13160 MT COX1 intronic 27.602027 119.589928 27.602027 92.987901 60.294964 1.78028104 -0.234157 112 63 SH14849 14849 MT tRNA Ser2; tRNA Arg2 5' 26.827759 90.341035 26.827759 64.513276 45.6705175 1.659635933 0.090714 112 64 SH9347 9347 RUF1 RUF1 311 328 26.78797 71.659601 49.2237855 1.69217501 -0.013263 112 65 SH17080 17080 YGR225W_7_945138_946919_INTRON_1184_1276 3' exon 35.623581 136.524356 35.623581 101.900775 68.762178 1.837349624 -0.135146 112 66 SH20477 20477 YGL189C spliced 33.385793 90.69458 62.0401865 1.792673095 0.046944 112 67 SH384 384 Asn1 1-13 1 13 118.372917 184.681037 151.526977 2.180489959 -0.030375 112 68 SH17671 17671 YKL006C-A_11_430270_429836_INTRON_37_177 intron 29.596032 115.103327 29.596032 86.507295 58.0516635 1.763814669 -0.029047 112 69 SH7661 7661 snoRNA cluster1 snR78 53.802104 185.973779 53.802104 133.171675 93.4868895 1.97075071 -0.306013 112 70 SH6986 6986 snR60 snR60 11 28 104.19087 163.950853 134.0708615 2.1273344 0.023107 112 71 SH21336 21336 YPR063C spliced 26.536905 84.814402 55.6756535 1.745665323 -0.196495 112 72 SH6049 6049 snR37 snR37 161 183 26.355219 77.963746 52.1594825 1.717333274 -0.125537 112 73 SH14823 14823 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly 30.192009 115.932101 30.192009 86.740092 58.4660505 1.766903757 -0.00652 112 74 SH21066 21066 YMR201C spliced 33.908745 88.184373 61.046559 1.785661189 0.117225 112 75 SH8335 8335 snoRNA cluster4 snR53 36.497541 129.775906 36.497541 94.278365 65.387953 1.815497742 0.044416 112 76 SH10329 10329 RUF7 RUF7 256 275 28.490889 85.750966 57.1209275 1.756795251 -0.073623 112 77 SH6944 6944 snR58 81-96 + 3' 81 26.48912 78.557292 52.523206 1.720351227 -0.123161 112 78 SH20539 20539 YGR183C spliced 28.38083 73.607654 50.994242 1.707521141 0.071968 112 79 SH16566 16566 YER133W_5_432491_433954_INTRON_178_702 intron 28.054391 103.194437 28.054391 76.140046 52.0972185 1.716814537 0.016304 112 80 SH7194 7194 snR64 snR64 36 50 627.425411 918.21823 772.8218205 2.888079376 -0.545356 112 81 SH2926 2926 Pro8 3' flank 28.280698 86.458588 57.369643 1.758682147 -0.095804 112 82 SH8601 8601 snR19 / U1 RNA U1 501 520 26.643178 79.442498 53.042838 1.724626752 -0.123453 112 83 SH8508 8508 snR19 / U1 RNA U1 36 57 27.3302 76.017674 51.673937 1.713271551 -0.031362 112 84 SH17677 17677 YKL006W_11_431544_432358_INTRON_130_527 exon/intron 30.181781 114.635959 30.181781 85.454178 57.8179795 1.762062911 0.016132 112 85 SH8314 8314 snoRNA cluster4 intergenic 25.385972 85.804712 25.385972 61.41874 43.402356 1.637513305 0.037414 112 86 SH20670 20670 YIL069C spliced 29.450387 89.788444 59.6194155 1.775387714 -0.09324 112 87 SH179 179 Arg2 11-23 11 23 33.245205 88.858624 61.0519145 1.785699287 0.084867 112 88 SH6984 6984 snR60 snR60 1 20 111.893265 144.521509 128.207387 2.107913049 0.324784 112 89 SH18448 18448 YMR142C_13_551206_550205_INTRON_5_406 3' exon 26.359037 98.417367 26.359037 73.05833 49.7086835 1.696432261 -0.062898 112 90 SH10394 10394 RUF7 3' 36.05862 98.197764 67.128192 1.82690495 -0.048809 112 91 SH10491 10491 RUF8 RUF8 381 399 29.507238 88.451734 58.979486 1.770700983 -0.067455 112 92 SH14710 14710 MT tRNA thr2 3' 27.329378 98.787367 27.329378 72.457989 49.8936835 1.698045568 0.014639 112 93 SH15110 15110 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " intronic / ORF3exon3 26.805389 116.786403 26.805389 90.981014 58.8932015 1.770065164 -0.247798 112 94 SH10821 10821 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 991 1013 30.024354 89.67036 59.847357 1.777044976 -0.06537 112 95 SH2239 2239 Phe1 tRNA 71 86 41.63716 95.974735 68.8059475 1.83762598 0.116774 112 96 SH12602 12602 MT_15S MT_15S 46.349638 159.269022 46.349638 113.919384 80.134511 1.903819591 -0.138725 112 97 SH1804 1804 Leu8 tRNA-intron/exon 46 63 28.681197 88.600964 58.6410805 1.768201964 -0.108065 112 98 SH8270 8270 snoRNA cluster4 snR67 27.138871 97.299579 27.138871 71.160708 49.1497895 1.691521662 0.018504 112 99 SH176 176 Arg2 5' flank - tRNA10 5' flank 10 32.826215 75.251058 54.0386365 1.732704382 0.324033 112 100 SH13590 13590 MT COX1 3' 25.212411 102.150492 25.212411 77.938081 51.575246 1.712441308 -0.210592 112 101 SH18258 18258 YML056C_13_164176_162194_INTRON_461_868 exon/intron 27.337694 101.402037 27.337694 75.064343 51.2010185 1.7092786 -0.018685 112 102 SH18326 18326 YML094W_13_82275_82849_INTRON_17_99 5' exon 29.833147 121.720872 29.833147 92.887725 61.360436 1.787888437 -0.128453 112 103 SH7189 7189 snR64 snR64 11 25 6141.364703 8290.325429 7215.845066 3.8582872 -1.033287 112 104 SH15478 15478 YBL091C-A_2_46858_46559_INTRON_35_122 intron/exon 28.356171 109.418303 28.356171 82.062132 55.2091515 1.742011073 -0.03853 113 2 SH14140 14140 MT COB intronic 26.837431 105.698381 26.837431 79.86095 53.3491905 1.727127834 -0.115026 113 3 SH5685 5685 snR34 snR34 346 361 34.712386 97.262284 65.987335 1.819460589 -0.061721 113 4 SH1779 1779 Leu8 5' flank 27.782546 93.334312 60.558429 1.7821746 -0.231185 113 5 SH6378 6378 snR43 snR43 131 145 38.047908 98.181806 68.114857 1.833241849 -0.004291 113 6 SH3474 3474 Tyr1 5' flank 28.533131 69.777637 49.155384 1.691571093 0.133819 113 7 SH24 24 Ala1 tRNA 16 28 27.606738 84.778747 56.1927425 1.749680228 -0.121605 113 8 SH6651 6651 snR48 snR48 81 102 25.919578 79.614569 52.7670735 1.722363009 -0.177742 113 9 SH21521 21521 copy of SH3382 31.869145 71.908613 51.888879 1.715074288 0.313771 113 10 SH19614 19614 RNA14 1.1 40.190575 104.353134 72.2718545 1.858969199 -0.084952 113 11 SH16177 16177 YDR305C_4_1073479_1072737_INTRON_88_176 intron 42.502813 125.818771 42.502813 84.315958 63.4093855 1.802153544 0.400843 113 12 SH13605 13605 MT ATP8/AAP1 ATP8 23.934515 78.757517 23.934515 55.823002 39.8787585 1.600741629 0.030816 113 13 SH214 214 Arg3 5' flank 28.860875 66.297226 47.5790505 1.677415771 0.204911 113 14 SH21771 21771 copy of SH13811 25.133942 62.172097 43.6530195 1.640014289 0.006376 113 15 SH18433 18433 YMR142C_13_551206_550205_INTRON_5_406 intron 38.821009 121.699055 38.821009 83.878046 61.3495275 1.787811222 0.334527 113 16 SH15069 15069 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.029365 101.127758 28.029365 74.098393 51.063879 1.708113802 0.041836 113 17 SH15327 15327 YAL003W_1_142172_143158_INTRON_81_446 intron 28.099433 107.536251 28.099433 80.436818 54.2681255 1.734544821 -0.035638 113 18 SH11974 11974 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6756 6771 18589.46809 10035.20312 14312.33561 4.155710511 0.108364 113 19 SH4556 4556 U3b (snR17b) U3b 336 355 27.726156 67.931609 47.8288825 1.679690234 0.104296 113 20 SH11626 11626 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5016 5029 46.14427 102.819564 74.481917 1.872050846 0.063461 113 21 SH8112 8112 snoRNA cluster 3; 5' 28.676648 99.122332 28.676648 71.445684 50.061166 1.699500961 0.120812 113 22 SH3060 3060 Ser3 5' flank - tRNA11 11 162.406214 235.645234 199.025724 2.298909212 -0.062483 113 23 SH21539 21539 copy of SH4149 35.726014 99.970826 67.84842 1.831539739 -0.093344 113 24 SH10610 10610 RUF8 3' 28.12868 75.581178 51.854929 1.714790044 0.028663 113 25 SH7633 7633 snR189 3' 25.236058 67.335192 46.285625 1.665446132 -0.067117 113 26 SH19799 19799 Negative Control 33.485623 98.810946 66.1482845 1.820518586 -0.124553 113 27 SH19554 19554 CBP1 2.2 27.348306 77.80681 52.577558 1.720800411 -0.053406 113 28 SH402 402 Asn1 3' flank 27.756445 69.672613 48.714529 1.687658508 0.082116 113 29 SH185 185 Arg2 41-57 41 57 41.248354 103.18936 72.218857 1.858650611 -0.039954 113 30 SH18981 18981 YOR096W_15_505793_506766_INTRON_145_545 intron 25.696843 101.247655 25.696843 76.550812 51.1238275 1.708623361 -0.156706 113 31 SH10357 10357 RUF7 RUF7 396 413 77.936721 135.562461 106.749591 2.02836622 0.040062 113 32 SH7559 7559 snR79 3' 27.366067 81.94237 54.6542185 1.737623689 -0.104033 113 33 SH21823 21823 copy of SH16003 46.57605 96.500109 71.5380795 1.854537277 0.200101 113 34 SH18832 18832 YNL302C_14_62942_61957_INTRON_21_571 intron 42.442316 132.664233 42.442316 91.221917 66.8321165 1.824985215 0.237293 113 35 SH9970 9970 RUF5-1 RUF5-1 656 672 54.113565 102.560655 78.33711 1.893967546 0.208856 113 36 SH20543 20543 YGR214W spliced 28.359428 80.474761 54.4170945 1.73573535 -0.018757 113 37 SH15879 15879 YDL082W_4_308423_309387_INTRON_5_369 intron 26.121174 105.812569 26.121174 80.691395 53.4062845 1.727592365 -0.176352 113 38 SH13547 13547 MT COX1 intronic 26.28917 99.239982 26.28917 73.950812 50.119991 1.700010984 -0.079661 113 39 SH14873 14873 MT tRNA Ala 5' 26.866851 96.551864 26.866851 70.685013 48.775932 1.688205577 0.00554 113 40 SH8109 8109 snoRNA cluster 3; 5' 27.132701 107.659961 27.132701 81.52726 54.3299805 1.735039549 -0.115084 113 41 SH7278 7278 snR65 3' 26.747643 80.837779 53.792711 1.730723432 -0.133512 113 42 SH17770 17770 YKL180W_11_109271_110131_INTRON_310_615 intron 26.115656 96.526812 26.115656 71.411156 48.763406 1.688094032 -0.05888 113 43 SH16222 16222 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 30.017881 115.853285 30.017881 86.835404 58.4266425 1.76661093 -0.015961 113 44 SH13027 13027 MT COX1 COX1ai2 29.78452 106.558113 29.78452 77.773593 53.7790565 1.730613179 0.107806 113 45 SH7287 7287 snR66 5' 29.697145 96.216056 62.9566005 1.799041269 -0.18903 113 46 SH19657 19657 SIR1 2.2 31.503404 81.20782 56.355612 1.75093717 0.15234 113 47 SH19762 19762 Negative Control 27.730393 70.665917 49.198155 1.691948816 0.066723 113 48 SH1459 1459 Leu2 tRNA-intron/exon 66 82 33.022822 95.211291 64.1170565 1.806973576 -0.061091 113 49 SH19687 19687 Negative Control 36.016854 90.00017 63.008512 1.799399223 0.127389 113 50 SH11586 11586 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4816 4829 17476.03914 10085.57327 13780.8062 4.139274625 0.019873 113 51 SH8654 8654 LSR1 / U2 RNA 5' 27.212588 77.630827 52.4217075 1.719511163 -0.060512 113 52 SH15406 15406 YBL059C-A_2_110500_110086_INTRON_35_119 5' exon 29.922322 115.881897 29.922322 86.959575 58.4409485 1.766717256 -0.022439 113 53 SH18112 18112 YLR367W_12_855877_857316_INTRON_698_1180 intron 30.00979 109.885505 30.00979 80.875715 55.4427525 1.743844783 0.082844 113 54 SH11987 11987 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S/3'ETS 6821 6841 27.79126 71.825535 49.8083975 1.697302569 0.055327 113 55 SH11214 11214 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2956 2969 123.120929 201.211999 162.166464 2.209961047 -0.129143 113 56 SH9058 9058 snR14 / U4 RNA 5' 30.119329 94.881673 62.500501 1.795883499 -0.148532 113 57 SH5508 5508 snR32 3' 27.477509 71.197394 49.3374515 1.693176712 0.041891 113 58 SH4273 4273 telomerase RNA telomerase 401 418 29.26137 65.849014 47.555192 1.677197939 0.23796 113 59 SH20435 20435 YGL076C spliced 42.482481 100.244848 71.3636645 1.853477143 0.044033 113 60 SH14263 14263 MT VAR1 includes 5’ processing site 5' / var1 28.58062 117.501103 28.58062 89.920483 59.2505515 1.772692397 -0.135636 113 61 SH2552 2552 Pro2 5' flank - tRNA10 10 74.331193 136.711947 105.52157 2.023341244 -0.025986 113 62 SH648 648 Gln2 tRNA 26 42 40.836181 92.045749 66.440965 1.822435932 0.187009 113 63 SH715 715 Gln3 3' flank 29.533123 85.822498 57.6778105 1.761008766 -0.0196 113 64 SH18528 18528 YMR225C_13_721402_720959_INTRON_59_205 intron/exon 27.220735 103.40699 27.220735 77.186255 52.203495 1.71769958 -0.054198 113 65 SH6315 6315 snR42 3' 31.614807 70.015868 50.8153375 1.705994814 0.32538 113 66 SH15775 15775 YDL012C_4_431513_431104_INTRON_46_131 exon/intron 29.436842 116.154946 29.436842 87.718104 58.577473 1.767730633 -0.057768 113 67 SH14101 14101 MT COB Cytbi4 27.561507 94.055845 27.561507 67.494338 47.5279225 1.676948831 0.099023 113 68 SH20499 20499 YGR001C spliced 30.087999 91.424638 60.7563185 1.78359145 -0.092508 113 69 SH2821 2821 Pro7 5' flank 27.121018 71.218319 49.1696685 1.69169728 0.01646 113 70 SH5744 5744 snR35 5' 30.747639 78.322073 54.534856 1.736674171 0.160733 113 71 SH3390 3390 Thr4 tRNA 36 52 48.441141 98.682297 73.561719 1.866651869 0.188398 113 72 SH21236 21236 YOR293W spliced 32.480822 77.814473 55.1476475 1.741526991 0.259265 113 73 SH13881 13881 MT COB intronic 25.863305 103.359559 25.863305 78.496254 52.1797795 1.71750224 -0.168353 113 74 SH2177 2177 Met2 tRNA 16 28 35.705076 94.643851 65.1744635 1.814077465 0.017796 113 75 SH3514 3514 Tyr1 3' flank 25.982021 75.619761 50.800891 1.705871329 -0.123709 113 76 SH13892 13892 MT COB intronic 26.399922 101.590495 26.399922 76.190573 51.2952475 1.71007713 -0.100197 113 77 SH8829 8829 LSR1 / U2 RNA U2 786 805 28.556182 70.627711 49.5919465 1.695411155 0.123754 113 78 SH20041 20041 YBR189W spliced 41.749136 110.534814 76.141975 1.881624138 -0.169086 113 79 SH18328 18328 YML094W_13_82275_82849_INTRON_17_99 intron 28.007818 105.571732 28.007818 78.563914 53.285866 1.726612028 -0.018203 113 80 SH8619 8619 snR19 / U1 RNA U1 591 603 37.355275 85.443961 61.399618 1.788165669 0.26407 113 81 SH12873 12873 MT COX1 COX1ai1 26.442969 100.804856 26.442969 75.361887 50.902428 1.706738498 -0.086565 113 82 SH5085 5085 snR11 snR11 26 40 31.605168 90.941114 61.273141 1.787270144 -0.018462 113 83 SH18617 18617 YNL069C_14_494998_493953_INTRON_29_477 3' exon 32.150011 107.845327 32.150011 76.695316 54.4226635 1.735779793 0.265781 113 84 SH11380 11380 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3786 3802 15943.26001 9473.97683 12708.61842 4.10409834 -0.000972 113 85 SH8057 8057 snoRNA cluster 2 intergenic 29.897374 110.528055 29.897374 81.630681 55.7640275 1.746354133 0.06647 113 86 SH1763 1763 Leu7 3' flank 29.234973 77.361835 53.298404 1.726714204 0.078032 113 87 SH18402 18402 YMR125W_13_517538_520445_INTRON_26_347 intron 128.727553 283.541071 128.727553 155.813518 142.2705355 2.153114966 0.358051 113 88 SH181 181 Arg2 21-33 21 33 38.499289 93.445984 65.9726365 1.81936384 0.107383 113 89 SH14840 14840 MT tRNA Asp tRNA Asp 30.909324 105.268868 30.909324 75.359544 53.134434 1.725376059 0.209221 113 90 SH11156 11156 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2666 2679 31.566947 93.909813 62.73838 1.7975333 -0.07168 113 91 SH6275 6275 snR42 snR42 156 180 27.455582 69.719752 48.587667 1.686526046 0.060478 113 92 SH20720 20720 YJL136C spliced 27.467747 69.729548 48.5986475 1.686624183 0.061196 113 93 SH19062 19062 YOR293W_15_867094_867848_INTRON_53_489 5' exon 381.727903 853.616523 381.727903 472.88862 427.3082615 2.630741289 -0.126408 113 94 SH14874 14874 MT tRNA Ala 5' 27.42739 92.316579 27.42739 65.889189 46.6582895 1.668928813 0.112725 113 95 SH18741 18741 YNL162W_14_331319_332151_INTRON_5_516 intron 28.580576 109.364962 28.580576 81.784386 55.182481 1.741801222 -0.020283 113 96 SH17922 17922 YLR078C_12_286560_285737_INTRON_4_92 5' exon 26.201819 97.264326 26.201819 72.062507 49.132163 1.691365884 -0.06125 113 97 SH13178 13178 MT COX1 Exon4 30.437957 105.745976 30.437957 76.308019 53.372988 1.727321517 0.167743 113 98 SH18649 18649 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.763594 122.708953 28.763594 94.945359 61.8544765 1.791371136 -0.211213 113 99 SH18938 18938 YOL121C_15_92849_92025_INTRON_21_410 intron 25.163754 93.849089 25.163754 69.685335 47.4245445 1.676003168 -0.106911 113 100 SH9028 9028 snR17a / U3a U3a 426 444 25.64471 73.969824 49.807267 1.697292712 -0.127706 113 101 SH12405 12405 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.201972 115.170692 30.201972 85.96872 58.085346 1.764066581 0.00774 113 102 SH19575 19575 AEP2/ATP13 0.6 28.065827 89.995059 59.030443 1.771076042 -0.161246 113 103 SH16406 16406 YER056C-A_5_270183_269421_INTRON_38_434 intron 35.16813 111.833878 35.16813 77.665748 56.416939 1.751409519 0.368616 113 104 SH15030 15030 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.108641 103.020808 26.108641 77.912167 52.010404 1.716090227 -0.143004 114 2 SH16307 16307 YDR450W_4_1359912_1360787_INTRON_48_482 intron 26.616839 113.498774 26.616839 87.881935 57.249387 1.757770841 -0.2264 114 3 SH11809 11809 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5931 5949 40.873896 85.067396 62.970646 1.799138149 0.34998 114 4 SH18533 18533 YMR230W_13_732413_733140_INTRON_53_462 exon/intron 25.364838 89.719149 25.364838 65.354311 45.3595745 1.656668972 -0.027259 114 5 SH4405 4405 telomerase RNA telomerase 1061 1076 45.533108 104.579142 75.056125 1.875386139 0.017616 114 6 SH9870 9870 RUF5-1 RUF5-1 156 172 38.411408 93.819242 66.115325 1.820302137 0.097281 114 7 SH2538 2538 Pro2 5' flank 27.373716 76.179646 51.776681 1.714134208 -0.030496 114 8 SH10947 10947 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1621 1638 130.112524 141.248828 135.680676 2.132517999 0.538808 114 9 SH2744 2744 Pro5 101-103 + 3' flank 101 30.125383 71.070152 50.5977675 1.704131355 0.219491 114 10 SH19358 19358 YPL249C-A_16_76239_75699_INTRON_17_254 3' exon 73.600605 194.377904 73.600605 121.777299 97.688952 1.989845451 0.177076 114 11 SH11054 11054 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2156 2169 11313.41039 6583.767911 8948.58915 3.951754569 0.127421 114 12 SH13568 13568 MT COX1 Exon 6 32.8298 124.900773 32.8298 93.070973 62.9503865 1.798998401 -0.019932 114 13 SH20776 20776 YKL006C-A spliced 31.219628 94.436804 62.828216 1.798154728 -0.093239 114 14 SH12659 12659 MT_15S MT_15S 27.361678 92.411194 27.361678 66.049516 46.705597 1.669368928 0.105773 114 15 SH20143 20143 YDL108W spliced 466.753299 502.748675 484.750987 2.685518702 0.032029 114 16 SH16182 16182 YDR367W_4_1212837_1213603_INTRON_31_131 5' exon 26.141662 93.445668 26.141662 68.304006 47.222834 1.674152047 -0.014276 114 17 SH8704 8704 LSR1 / U2 RNA U2 161 178 28.420086 73.885758 51.152922 1.708870447 0.070796 114 18 SH20440 20440 YGL087C spliced 32.587079 101.923123 67.255101 1.827725229 -0.210774 114 19 SH16137 16137 YDR092W_4_629869_630598_INTRON_31_298 5' exon 30.213606 120.812488 30.213606 91.598882 60.906244 1.784661818 -0.089878 114 20 SH4453 4453 telomerase RNA 1301 + 3' 1301 32.825586 103.525416 68.175501 1.833628338 -0.236216 114 21 SH7727 7727 snoRNA cluster1 intergenic 26.65459 109.185744 26.65459 83.531154 55.092872 1.741095413 -0.172893 114 22 SH7920 7920 snoRNA cluster1 snR72 26.937222 100.341538 26.937222 74.404316 50.670769 1.704757495 -0.03863 114 23 SH6755 6755 snR50 5' 26.780094 74.360169 50.5701315 1.703894083 -0.049327 114 24 SH80 80 Ala2 36-51 36 51 480.457086 679.72581 580.091448 2.763496463 -0.414292 114 25 SH7185 7185 snR64 5' - 7 -9 7 36.81921 85.91578 61.367495 1.787938396 0.240533 114 26 SH17489 17489 YJL024C_10_396288_395627_INTRON_23_99 3' exon 29.862462 120.401232 29.862462 91.53877 60.700616 1.783193098 -0.104508 114 27 SH109 109 Arg1 5' flank 27.994248 68.387703 48.1909755 1.682965718 0.116407 114 28 SH17933 17933 YLR093C_12_327416_326514_INTRON_17_157 intron 28.238265 114.767944 28.238265 87.529679 57.883972 1.762558325 -0.11096 114 29 SH5057 5057 snR10 3' 28.163985 77.105179 52.634582 1.721271178 0.011039 114 30 SH9645 9645 RUF4 RUF4 1 15 28.07716 82.126189 55.1016745 1.741164797 -0.057942 114 31 SH6397 6397 snR43 3' 25.725572 77.239651 51.4826115 1.711660569 -0.16315 114 32 SH9158 9158 snR7 U5 RNA U5 61 80 25.217888 71.037723 48.1278055 1.682396059 -0.121217 114 33 SH6088 6088 snR37 snR37 356 372 31.052743 76.80141 53.9270765 1.731806877 0.198968 114 34 SH16872 16872 YGL187C_7_150529_149708_INTRON_1_342 intron 26.959065 101.172042 26.959065 75.212977 51.086021 1.708302078 -0.047442 114 35 SH20779 20779 YKL006W spliced 29.784309 92.429821 61.107065 1.786091425 -0.123001 114 36 SH14111 14111 MT COB intronic 25.484895 103.217508 25.484895 78.732613 52.108754 1.716910689 -0.199623 114 37 SH11288 11288 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3326 3343 63.467435 122.604707 93.036071 1.968651361 0.014485 114 38 SH16533 16533 YER131W_5_423587_424307_INTRON_1_361 intron 49.132857 155.36641 49.132857 107.233553 78.183205 1.89311347 0.033853 114 39 SH18731 18731 YNL147W_14_350937_351380_INTRON_19_138 intron/exon 94.7178 219.409311 94.7178 125.691511 110.2046555 2.042199941 0.386081 114 40 SH20225 20225 YDR129C spliced 29.068729 95.175097 62.121913 1.793244821 -0.200828 114 41 SH4159 4159 SRP RNA 3' 30.200426 81.696719 55.9485725 1.74778901 0.084663 114 42 SH21495 21495 copy of SH2288 30.300932 86.69568 58.498306 1.76714329 -0.000908 114 43 SH11672 11672 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5246 5264 1439.662008 1260.144854 1349.903431 3.130302701 0.048769 114 44 SH5404 5404 snR31 snR31 86 98 30.85336 86.845172 58.849266 1.76974105 0.020608 114 45 SH10163 10163 RUF6 RUF6 661 675 29.102829 89.821203 59.462016 1.774239629 -0.109693 114 46 SH19502 19502 YPT1 54.287506 94.024603 74.1560545 1.870146615 0.384845 114 47 SH4324 4324 telomerase RNA telomerase 656 672 27.593283 75.629926 51.6116045 1.712747361 -0.008192 114 48 SH14691 14691 MT 21S rRNA 3' 104.351703 275.846095 104.351703 172.494392 138.4230475 2.141208406 -0.062164 114 49 SH6463 6463 snR45 161-172 + 3' 161 26.229689 73.593995 49.911842 1.698203598 -0.079382 114 50 SH87 87 Ala2 tRNA + 3' flank 71 3' flank 29.345417 73.942492 51.6439545 1.71301949 0.130397 114 51 SH9491 9491 RUF2 3' 27.629351 85.068478 56.3489145 1.750885554 -0.123478 114 52 SH15928 15928 YDL108W_4_267697_268698_INTRON_29_109 intron 27.840406 108.028433 27.840406 81.188027 54.5142165 1.736509775 -0.062394 114 53 SH17915 17915 YLR061W_12_263195_263949_INTRON_13_401 intron 27.917815 106.09547 27.917815 79.177655 53.547735 1.728741105 -0.032059 114 54 SH20140 20140 YDL108W spliced 887.436776 1022.081547 954.7591615 2.979893834 -0.260269 114 55 SH9396 9396 RUF1 3' 30.304013 79.210384 54.7571985 1.738441221 0.122059 114 56 SH2246 2246 Phe1 3' flank 30.021682 82.612717 56.3171995 1.75064105 0.061327 114 57 SH4134 4134 SRP RNA SRP RNA 561 573 36.815061 94.02935 65.4222055 1.815725181 0.057191 114 58 SH6288 6288 snR42 snR42 221 237 27.186338 81.115419 54.1508785 1.733605507 -0.106293 114 59 SH12854 12854 MT COX1 COX1ai1 29.326703 122.672497 29.326703 94.345794 61.8362485 1.791243134 -0.175464 114 60 SH10775 10775 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 761 779 27.083094 64.280099 45.6815965 1.659741273 0.112122 114 61 SH9316 9316 RUF1 RUF1 156 175 27.21706 72.339706 49.778383 1.697040785 0.008276 114 62 SH12271 12271 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.698584 123.861643 29.698584 95.163059 62.4308215 1.79539905 -0.171941 114 63 SH3943 3943 RNase MRP RNaseMRP 131 153 27.503349 71.239602 49.3714755 1.693476107 0.043132 114 64 SH1708 1708 Leu6 3' flank 29.721016 88.557918 59.139467 1.771877406 -0.059649 114 65 SH12939 12939 MT COX1 COX1ai2 270.707678 586.834945 270.707678 317.127267 293.9174725 2.468225404 0.081733 114 66 SH8877 8877 LSR1 / U2 RNA U2 1026 1038 29.875164 89.919707 59.8974355 1.777408229 -0.076333 114 67 SH19924 19924 YAL030W spliced 30.337021 90.87017 60.6035955 1.782498391 -0.072066 114 68 SH7246 7246 snR65 snR65 6 27 27.806313 67.821464 47.8138885 1.679554064 0.111413 114 69 SH11570 11570 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4736 4752 5607.708982 4022.989094 4815.349038 3.682627772 -0.006767 114 70 SH13545 13545 MT COX1 intronic 25.838143 101.831529 25.838143 76.993386 51.4157645 1.711096298 -0.151677 114 71 SH16425 16425 YER074W_5_306319_307192_INTRON_4_469 intron 29.665708 119.712453 29.665708 91.046745 60.3562265 1.78072208 -0.105018 114 72 SH8480 8480 snoRNA cluster 5 3' 25.561687 105.959091 25.561687 81.397404 53.4795455 1.728187708 -0.22587 114 73 SH3039 3039 Ser2 3' flank 26.03669 79.646828 52.841759 1.722977266 -0.169449 114 74 SH11367 11367 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3721 3736 5790.919226 4001.581376 4896.250301 3.689863611 0.043529 114 75 SH1896 1896 Lys1 5' flank 31.087264 81.858234 56.472749 1.751838929 0.122202 114 76 SH18124 18124 YLR388W_12_898158_898821_INTRON_1_488 intron 31.227738 112.88698 31.227738 82.659242 56.94349 1.755444081 0.113172 114 77 SH9168 9168 snR7 U5 RNA U5 111 123 33.180627 83.119587 58.150107 1.764550518 0.185768 114 78 SH7756 7756 snoRNA cluster1 snR76 702.07448 1835.515116 702.07448 1134.440636 918.257558 2.962964512 -0.731744 114 79 SH13951 13951 MT COB Cytbi3 25.940687 91.154734 25.940687 66.214047 46.077367 1.663487654 0.001421 114 80 SH8563 8563 snR19 / U1 RNA U1 311 327 28.498836 77.613088 53.055962 1.724734193 0.026734 114 81 SH10951 10951 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1641 1661 1473.542916 1545.523923 1509.53342 3.178842732 -0.240208 114 82 SH7167 7167 snR64 5' 29.318134 86.692651 58.0053925 1.76346837 -0.044985 114 83 SH3718 3718 Val3 71-73 + 3' flank 71 27.2518 78.717258 52.984529 1.724149078 -0.071714 114 84 SH10735 10735 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 561 579 30.807213 85.10264 57.9549265 1.763090359 0.04996 114 85 SH13313 13313 MT COX1 COX1-ai5a 27.095665 109.76657 27.095665 83.670905 55.383285 1.743378712 -0.143643 114 86 SH18186 18186 YML024W_13_225889_226697_INTRON_4_401 5' exon 31.293456 130.898776 31.293456 100.60532 65.949388 1.81921077 -0.21897 114 87 SH16220 16220 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 35.460024 131.648267 35.460024 97.188243 66.3241335 1.821671585 -0.041961 114 88 SH6715 6715 snR49 snR49 101 122 28.557438 91.496909 60.0271735 1.778347894 -0.163608 114 89 SH20558 20558 YHL001W spliced 28.844807 76.84518 52.8449935 1.723003849 0.059426 114 90 SH817 817 Glu1 3' flank 29.223874 75.473818 52.348846 1.718907112 0.102054 114 91 SH14162 14162 MT COB intronic 27.168246 105.321233 27.168246 79.152987 53.1606165 1.725590009 -0.083027 114 92 SH21423 21423 Trp1 spliced 75.264526 149.067369 112.1659475 2.049861029 -0.169609 114 93 SH14887 14887 MT tRNA Ala 3' 25.899338 84.826235 25.899338 59.926897 42.9131175 1.632590066 0.099825 114 94 SH4715 4715 snR4 snR4 111 123 40.121021 141.225842 90.6734315 1.957480052 -0.695691 114 95 SH6167 6167 snR39B 3' 30.778885 111.628593 71.203739 1.8525028 -0.444273 114 96 SH7511 7511 snR71 3' 28.457785 98.064414 63.2610995 1.801136736 -0.275521 114 97 SH3147 3147 Ser4 3' flank 26.138448 73.810773 49.9746105 1.698749418 -0.088915 114 98 SH11069 11069 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2231 2249 49.563517 95.288066 72.4257915 1.85989325 0.279022 114 99 SH21882 21882 copy of SH18402 132.828459 182.44304 157.6357495 2.197654716 0.127146 114 100 SH2319 2319 Phe3 5' flank 34.359115 86.627408 60.4932615 1.781707 0.164676 114 101 SH6001 6001 snR37 5' 30.431402 92.301388 61.366395 1.787930611 -0.092083 114 102 SH3543 3543 Tyr2 5' flank - tRNA1 1 32.913238 97.18878 65.051009 1.813254037 -0.105676 114 103 SH19374 19374 YPR043W_16_654161_654842_INTRON_3_405 intron 30.862244 110.664544 30.862244 80.8023 55.832272 1.746885301 0.132563 114 104 SH20875 20875 YLR185W spliced 117.873967 189.194072 153.5340195 2.18620462 -0.076384 115 2 SH1520 1520 Leu3 tRNA 71 87 100.676491 204.757093 152.716792 2.183886793 -0.397875 115 3 SH8572 8572 snR19 / U1 RNA U1 356 371 28.614794 74.442694 51.528744 1.712049557 0.076142 115 4 SH15029 15029 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.691573 107.564175 25.691573 82.872602 54.2820875 1.734656541 -0.234303 115 5 SH15311 15311 YAL003W_1_142172_143158_INTRON_81_446 5'exon 27.303658 108.870911 27.303658 82.567253 54.9354555 1.73985273 -0.115941 115 6 SH20062 20062 YBR255C-A spliced 25.935083 73.635802 49.7854425 1.697102372 -0.10168 115 7 SH19809 19809 Negative Control 32.887139 94.6908 63.7889695 1.804745586 -0.053479 115 8 SH687 687 Gln3 5' flank 26.278829 74.038653 50.158741 1.700346627 -0.081558 115 9 SH19814 19814 Negative Control 28.468587 93.409432 60.9390095 1.784895391 -0.199781 115 10 SH7857 7857 snoRNA cluster1 intergenic 27.655422 105.714517 27.655422 79.059095 53.3572585 1.727193507 -0.048351 115 11 SH11124 11124 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2506 2519 60.33182 95.968983 78.1504015 1.892931214 0.43835 115 12 SH2945 2945 Ser1 5' flank 26.630543 94.435108 60.5328255 1.781990946 -0.306004 115 13 SH8290 8290 snoRNA cluster4 intergenic 30.99685 130.93257 30.99685 100.93572 65.966285 1.819322027 -0.233768 115 14 SH20404 20404 YFR031C-A spliced 70.552819 138.736696 104.6447575 2.019717476 -0.107592 115 15 SH18270 18270 YML056C_13_164176_162194_INTRON_461_868 intron 36.894797 180.265407 36.894797 144.37061 90.6327035 1.957284935 -0.814438 115 16 SH15062 15062 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.228552 98.616717 26.228552 73.388165 49.8083585 1.697302229 -0.076778 115 17 SH7603 7603 snR189 snR189 86 103 35.245272 100.966171 68.1057215 1.833183598 -0.124925 115 18 SH18757 18757 YNL162W_14_331319_332151_INTRON_5_516 intron 28.278161 100.90125 28.278161 73.623089 50.950625 1.707149516 0.064929 115 19 SH5944 5944 snR36 snR36 176 192 30.673202 90.820025 60.7466135 1.783522072 -0.056461 115 20 SH7664 7664 snoRNA cluster1 snR78 26.668977 90.994402 26.668977 65.325425 45.997201 1.662731405 0.066969 115 21 SH14356 14356 MT ORF9 and ORF10 (hypothetical) ORF9 29.256701 115.89098 29.256701 87.634279 58.44549 1.766751004 -0.064504 115 22 SH9388 9388 RUF1 RUF1 516 537 31.505188 73.138171 52.3216795 1.718681676 0.275154 115 23 SH15299 15299 MT 9S rRNA 3' 29.032601 101.759936 29.032601 73.727335 51.379968 1.710793829 0.113122 115 24 SH13044 13044 MT COX1 COX1ai2 26.527005 101.154937 26.527005 75.627932 51.0774685 1.708229365 -0.083836 115 25 SH12862 12862 MT COX1 COX1ai1 26.190401 99.705052 26.190401 74.514651 50.352526 1.702021262 -0.094199 115 26 SH7395 7395 snR68 3' 39.619477 96.900753 68.260115 1.834167016 0.0561 115 27 SH19558 19558 CBP1 2.2 26.324056 62.148227 44.2361415 1.645777239 0.093241 115 28 SH1251 1251 Ile2 5' flank 28.59503 90.056857 59.3259435 1.773244654 -0.137306 115 29 SH6759 6759 snR50 5' 34.848537 90.154386 62.5014615 1.795890173 0.095727 115 30 SH21093 21093 YNL012W spliced 29.822239 86.492831 58.157535 1.764605991 -0.018597 115 31 SH3217 3217 Thr1 5' flank 27.271651 83.059973 55.165812 1.741670015 -0.124108 115 32 SH16508 16508 YER117W_5_396765_397649_INTRON_43_513 intron 24.796056 95.590431 24.796056 71.794375 48.2952155 1.683904108 -0.16387 115 33 SH12337 12337 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.073888 116.17485 33.073888 84.100962 58.587425 1.767804411 0.163298 115 34 SH18383 18383 YMR116C_13_500687_499455_INTRON_538_810 intron 27.145652 107.811697 27.145652 81.666045 54.4058485 1.735645588 -0.115888 115 35 SH15524 15524 YBR048W_2_332790_333771_INTRON_46_556 intron 32.064038 123.918752 32.064038 92.854714 62.459376 1.795597641 -0.035381 115 36 SH15521 15521 YBR048W_2_332790_333771_INTRON_46_556 intron 29.442372 107.850347 29.442372 79.407975 54.4251735 1.735799822 0.065215 115 37 SH10841 10841 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1091 1114 36.905348 83.673627 60.2894875 1.780241592 0.296228 115 38 SH14166 14166 MT COB intronic 38.849976 133.259114 38.849976 95.409138 67.129557 1.826913781 0.07196 115 39 SH9863 9863 RUF5-1 RUF5-1 121 142 25.185501 69.573087 47.379294 1.675588585 -0.1037 115 40 SH19842 19842 Negative Control 28.629601 87.98737 58.3084855 1.765731761 -0.099725 115 41 SH21903 21903 copy of SH19203 26.422688 72.493966 49.458327 1.694239422 -0.050812 115 42 SH11547 11547 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4621 4638 696.390383 545.921748 621.1560655 2.79320073 0.414337 115 43 SH11863 11863 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6201 6216 32.270882 77.021688 54.646285 1.737560643 0.266428 115 44 SH19228 19228 YPL090C_16_378390_377286_INTRON_7_400 intron 42.702013 138.44278 42.702013 96.740767 69.72139 1.843366037 0.121153 115 45 SH3401 3401 Thr4 3' flank 26.601122 67.873725 47.2374235 1.674286202 0.025342 115 46 SH12848 12848 MT COX1 COX1ai1 29.737894 116.926122 29.737894 88.188228 58.963061 1.770580021 -0.052418 115 47 SH17436 17436 YIL133C_9_99416_98527_INTRON_32_321 intron 30.517802 124.274204 30.517802 94.756402 62.637102 1.796831656 -0.128897 115 48 SH17444 17444 YIL133C_9_99416_98527_INTRON_32_321 3' exon 28.83484 106.700578 28.83484 78.865738 53.850289 1.731188038 0.032789 115 49 SH17908 17908 YLR061W_12_263195_263949_INTRON_13_401 intron 29.359094 116.210302 29.359094 87.851208 58.605151 1.767935789 -0.063653 115 50 SH19665 19665 SIR1 2.4 29.779679 69.11804 49.4488595 1.694156279 0.225281 115 51 SH1019 1019 Gly2 3' flank 30.01425 90.318199 60.1662245 1.77935276 -0.076957 115 52 SH14568 14568 MT 21S rRNA 21S rRNA3 37.313505 138.418931 37.313505 102.105426 69.7094655 1.843291753 -0.101151 115 53 SH3587 3587 Val1 5' flank 29.072689 79.195751 54.13422 1.733471884 0.044086 115 54 SH11430 11430 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4036 4051 4518.446799 3662.802886 4090.624843 3.611789652 -0.139311 115 55 SH8615 8615 snR19 / U1 RNA U1 571 587 30.342112 80.830106 55.586109 1.744966275 0.104159 115 56 SH4491 4491 U3b (snR17b) U3b 11 30 27.730833 72.855339 50.293086 1.701508285 0.037475 115 57 SH16085 16085 YDR025W_4_491510_492319_INTRON_46_384 intron 32.159269 120.322241 32.159269 89.162972 60.6611205 1.782910428 0.035347 115 58 SH7019 7019 snR60 3' 27.281334 80.471399 53.8763665 1.731398299 -0.091739 115 59 SH14458 14458 MT 21S rRNA 21S rRNA3 29.538853 117.257816 29.538853 88.718963 59.128908 1.771799858 -0.070688 115 60 SH19321 19321 YPL198W_16_173151_174701_INTRON_12_420 3' exon 29.678119 126.306628 29.678119 97.628509 63.653314 1.803821019 -0.212432 115 61 SH3369 3369 Thr4 5' flank 29.827855 91.523748 60.6758015 1.783015522 -0.105806 115 62 SH9697 9697 RUF4 RUF4 261 278 29.869051 78.37537 54.1222105 1.733375526 0.105429 115 63 SH723 723 Gln3 3' flank 27.424596 85.212532 56.318564 1.750651573 -0.139187 115 64 SH9197 9197 snR7 U5 RNA 3' 27.140022 97.270003 62.2050125 1.793825382 -0.326396 115 65 SH7419 7419 snR69 5' - 15 -4 15 34.027731 74.482843 54.255287 1.734442065 0.38923 115 66 SH3269 3269 Thr2 5' flank 27.501408 81.160227 54.3308175 1.73504624 -0.085135 115 67 SH13836 13836 MT COB Cytbi2 27.937857 108.661297 27.937857 81.72344 54.8306485 1.739023382 -0.062392 115 68 SH14464 14464 MT 21S rRNA 21S rRNA3 27.637075 103.727481 27.637075 77.090406 52.3637405 1.719030662 -0.024354 115 69 SH20067 20067 YBR230C spliced 38.309196 86.757109 62.5331525 1.796110323 0.254652 115 70 SH16257 16257 YDR424C_4_1319830_1319376_INTRON_26_121 5' exon 29.964592 117.364833 29.964592 88.400241 59.1824165 1.772192694 -0.045968 115 71 SH10574 10574 RUF8 RUF8 796 810 31.463801 81.377661 56.420731 1.751438709 0.147424 115 72 SH3424 3424 Trp1 5' flank 41.661151 101.434662 71.5479065 1.854596931 0.003368 115 73 SH21774 21774 copy of SH14038 25.931625 66.171426 46.0515255 1.663244021 0.001422 115 74 SH15405 15405 YBL059C-A_2_110500_110086_INTRON_35_119 5' exon 31.063099 112.386008 31.063099 82.322909 56.693004 1.75352947 0.112404 115 75 SH4863 4863 snR8 snR8 96 111 29.241368 87.152903 58.1971355 1.764901609 -0.056685 115 76 SH17133 17133 YHR010W_8_126513_127484_INTRON_32_592 intron 29.434992 118.719405 29.434992 90.284413 59.8597025 1.777134554 -0.102461 115 77 SH3743 3743 Val4 5' flank 28.02427 83.924835 55.9745525 1.74799063 -0.083186 115 78 SH4070 4070 SRP RNA SRP RNA 241 257 33.264945 87.404822 60.3348835 1.780568478 0.111398 115 79 SH1273 1273 Ile2 tRNA-intron 61 75 37.687983 100.568548 69.1282655 1.83965566 -0.061653 115 80 SH1775 1775 Leu8 5' flank 26.462735 73.091044 49.7768895 1.697027755 -0.055767 115 81 SH18418 18418 YMR133W_13_536206_537608_INTRON_1243_1358 intron 33.598636 120.152371 33.598636 87.553735 60.5761855 1.782301922 0.122124 115 82 SH17293 17293 YHR141C_8_382752_381991_INTRON_5_445 intron 31.477827 117.037678 31.477827 86.559851 59.018839 1.770990662 0.052518 115 83 SH5586 5586 snR33 3' 29.214414 73.341323 51.2778685 1.709929964 0.130141 115 84 SH13867 13867 MT COB intronic 26.834217 114.981237 26.834217 89.14702 57.9906185 1.763357741 -0.225385 115 85 SH19604 19604 AEP2/ATP13 2.1 38.318967 93.050407 65.684687 1.817464135 0.112271 115 86 SH16394 16394 YER044C-A_5_239773_238459_INTRON_64_151 intron/exon 26.63974 107.027604 26.63974 81.387864 54.013802 1.732504748 -0.147918 115 87 SH315 315 Arg5 5' flank 26.591215 76.800308 51.6957615 1.713454937 -0.093941 115 88 SH15358 15358 YBL026W_2_170585_171000_INTRON_55_182 intron 28.796484 100.991672 28.796484 73.195188 50.995836 1.707534716 0.104989 115 89 SH5111 5111 snR11 snR11 156 178 26.450355 75.478467 50.964411 1.707267009 -0.08751 115 90 SH13747 13747 MT COB Exon1 27.440724 111.223799 27.440724 84.783075 56.1118995 1.749054971 -0.133021 115 91 SH3750 3750 Val4 5' flank 28.407355 100.205188 64.3062715 1.80825333 -0.311303 115 92 SH5580 5580 snR33 3' 27.985069 65.987623 46.986346 1.671971672 0.150057 115 93 SH19577 19577 AEP2/ATP13 0.6 29.429658 98.267699 63.8486785 1.805151913 -0.233779 115 94 SH5927 5927 snR36 snR36 91 108 33.051606 77.750531 55.4010685 1.743518141 0.283853 115 95 SH14296 14296 MT VAR1 includes 5’ processing site VAR1 26.443851 95.471214 26.443851 70.027363 48.235607 1.683367748 -0.016052 115 96 SH5741 5741 snR34 3' 26.260925 79.109904 52.6854145 1.721690401 -0.146481 115 97 SH19096 19096 YOR312C_15_901173_900242_INTRON_2_427 intron 28.058192 104.95422 28.058192 77.896028 52.97711 1.724088263 -0.006269 115 98 SH11886 11886 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6316 6331 34.335301 73.994793 54.165047 1.733719124 0.411443 115 99 SH18054 18054 YLR333C_12_796335_795573_INTRON_1_423 intron 26.633199 98.255878 26.633199 72.622679 49.627939 1.69572624 -0.037232 115 100 SH15876 15876 YDL082W_4_308423_309387_INTRON_5_369 intron 25.329974 94.610032 25.329974 70.280058 47.805016 1.679473468 -0.102386 115 101 SH21136 21136 YNL147W spliced 28.201005 92.728603 60.464804 1.781502649 -0.201104 115 102 SH6398 6398 snR43 3' 28.671806 73.111876 50.891841 1.706648162 0.097953 115 103 SH9449 9449 RUF2 RUF2 86 102 28.87836 74.63878 51.75857 1.713982269 0.090784 115 104 SH17936 17936 YLR093C_12_327416_326514_INTRON_17_157 intron 28.850222 105.988951 28.850222 78.138729 53.4944755 1.728308934 0.043066 116 2 SH15898 15898 YDL083C_4_307788_306925_INTRON_25_456 exon/intron 28.026876 102.757437 28.026876 75.730561 51.8787185 1.71498924 0.019854 116 3 SH7009 7009 snR60 3' 25.097984 66.681078 45.889531 1.661713619 -0.067451 116 4 SH21347 21347 YPR132W spliced 43.360919 110.005616 76.6832675 1.88470061 -0.126886 116 5 SH10432 10432 RUF8 RUF8 86 101 33.903587 94.877316 64.3904515 1.80882147 -0.031458 116 6 SH3549 3549 Tyr2 tRNA 16 32 339.80986 645.999267 492.9045635 2.692762839 -0.77664 116 7 SH20860 20860 YLR078C spliced 27.410841 81.448696 54.4297685 1.735836487 -0.094902 116 8 SH12495 12495 MT_tRNA Pro 5' / tRNA 26.256947 102.728503 26.256947 77.471556 51.8642515 1.714868115 -0.126654 116 9 SH6040 6040 snR37 snR37 116 133 28.522888 72.750987 50.6369375 1.704467432 0.093085 116 10 SH4971 4971 snR9 3' 33.403476 104.662175 69.0328255 1.839055649 -0.243475 116 11 SH10773 10773 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 751 770 26.922517 89.330725 58.126621 1.764375077 -0.221256 116 12 SH18441 18441 YMR142C_13_551206_550205_INTRON_5_406 intron 28.314022 115.671225 28.314022 88.357203 58.3356125 1.765933762 -0.121049 116 13 SH17576 17576 YJL191W_10_73786_74610_INTRON_11_418 exon/intron 30.26513 124.793264 30.26513 95.528134 62.896632 1.79862739 -0.152573 116 14 SH9212 9212 snR6 / U6 RNA 5' 30.955946 107.0491 69.002523 1.838864971 -0.354307 116 15 SH4979 4979 snR10 5' 27.729068 94.651657 61.1903625 1.786683026 -0.255445 116 16 SH20153 20153 YDL125C spliced 26.236505 74.922457 50.579481 1.703974369 -0.096049 116 17 SH8302 8302 snoRNA cluster4 intergenic 33.077291 116.114005 33.077291 84.036714 58.5570025 1.767578837 0.164618 116 18 SH16887 16887 YGL189C_7_148970_148233_INTRON_1_368 intron 28.523405 100.799032 28.523405 73.275627 50.899516 1.706713653 0.085936 116 19 SH9152 9152 snR7 U5 RNA U5 31 47 38.03758 101.26189 69.649735 1.842919468 -0.068227 116 20 SH5556 5556 snR33 snR33 66 83 27.077282 81.24041 54.158846 1.733669402 -0.115408 116 21 SH5989 5989 snR36 3' 27.02056 76.371328 51.695944 1.71345647 -0.05772 116 22 SH7095 7095 snR63 5' 38.008881 100.005139 69.00701 1.83889321 -0.043089 116 23 SH258 258 Arg3 3' flank 30.900838 90.534453 60.7176455 1.783314922 -0.041693 116 24 SH19698 19698 Negative Control 33.321247 87.889664 60.6054555 1.78251172 0.105104 116 25 SH14559 14559 MT 21S rRNA 21S rRNA3 28.760814 110.584337 28.760814 82.823523 55.7921685 1.746573242 -0.021079 116 26 SH18572 18572 YNL012W_14_609682_611661_INTRON_106_189 3' exon 28.767156 114.827989 28.767156 87.060833 57.9139945 1.762783521 -0.076933 116 27 SH21681 21681 copy of SH10031 28.914446 84.175304 56.544875 1.752393248 -0.02725 116 28 SH1479 1479 Leu2 3' flank 31.107773 92.159487 61.63363 1.789817747 -0.060281 116 29 SH7630 7630 snR189 3' 25.997858 74.964008 50.480933 1.703127373 -0.114178 116 30 SH9879 9879 RUF5-1 RUF5-1 201 213 38.125879 86.113616 62.1197475 1.793229682 0.26567 116 31 SH9236 9236 snR6 / U6 RNA U6 51 67 45.993176 113.158875 79.5760255 1.900782244 -0.132276 116 32 SH15164 15164 MT tRNA Val tRNA 30.687512 119.56534 30.687512 89.877828 60.28267 1.78019248 -0.039705 116 33 SH19089 19089 YOR312C_15_901173_900242_INTRON_2_427 5' exon 48.267999 152.333044 48.267999 105.065045 76.666522 1.884605762 0.058693 116 34 SH7114 7114 snR63 snR63 76 95 25.24823 73.229292 49.238761 1.692307116 -0.148057 116 35 SH13854 13854 MT COB Cytbi2 25.730565 97.487859 25.730565 72.757294 49.2439295 1.692352701 -0.105409 116 36 SH21503 21503 copy of SH2553 219.436131 339.037483 279.236807 2.445972663 -0.291138 116 37 SH4360 4360 telomerase RNA telomerase 836 848 28.830335 87.928089 58.379212 1.766258229 -0.089331 116 38 SH11611 11611 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4941 4956 33.092995 85.039846 59.0664205 1.771340653 0.146896 116 39 SH14900 14900 MT tRNA Ile tRNA 32.076979 116.922099 32.076979 85.84512 58.9610495 1.770565205 0.09058 116 40 SH644 644 Gln2 tRNA 6 23 34.37306 86.542994 60.458027 1.78145397 0.167003 116 41 SH9835 9835 RUF5-1 5' 26.284397 75.962192 51.1232945 1.708618833 -0.105762 116 42 SH17589 17589 YJL191W_10_73786_74610_INTRON_11_418 intron 35.845614 127.692914 35.845614 92.8473 64.346457 1.808524639 0.060071 116 43 SH900 900 Glu3 tRNA 11 27 1535.212525 1306.924406 1421.068466 3.152615002 0.076571 116 44 SH10637 10637 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 71 87 31.959398 98.141696 65.050547 1.813250953 -0.150626 116 45 SH16912 16912 YGL251C_7_31636_27921_INTRON_59_210 5' exon 28.738067 112.090344 28.738067 84.352277 56.545172 1.752395529 -0.040882 116 46 SH6707 6707 snR49 snR49 61 78 29.743196 78.269436 54.006316 1.732444553 0.098827 116 47 SH4547 4547 U3b (snR17b) U3b 291 307 30.646107 73.613218 52.1296625 1.717084913 0.216581 116 48 SH5021 5021 snR10 snR10 136 152 29.141681 70.95524 50.0484605 1.699390723 0.158401 116 49 SH1167 1167 His1 tRNA 56 71 3554.284626 5729.266232 4641.775429 3.666684125 -1.160249 116 50 SH5139 5139 snR11 3' 34.683545 97.813056 66.2483005 1.821174742 -0.073898 116 51 SH2196 2196 Met2 3' flank 27.529362 79.277425 53.4033935 1.727568855 -0.05972 116 52 SH10342 10342 RUF7 RUF7 321 340 29.768232 85.269273 57.5187525 1.759809458 0.001017 116 53 SH307 307 Arg4 3' flank 27.504914 83.44206 55.473487 1.744085466 -0.112655 116 54 SH9042 9042 snR17a / U3a 3' 27.742043 68.643588 48.1928155 1.682982299 0.095394 116 55 SH18437 18437 YMR142C_13_551206_550205_INTRON_5_406 intron 30.257611 106.194986 30.257611 76.937375 53.597493 1.729144476 0.148322 116 56 SH301 301 Arg4 3' flank 30.081438 91.828927 60.9551825 1.785010636 -0.099626 116 57 SH14035 14035 MT COB Cytbi4 27.299758 98.339078 27.299758 72.03932 49.669539 1.696090129 0.018112 116 58 SH16945 16945 YGR027C_7_534779_534126_INTRON_1_312 intron 31.396707 121.577133 31.396707 91.180426 61.2885665 1.787379464 -0.031385 116 59 SH5901 5901 snR36 5' 26.711676 71.112564 48.91212 1.689416487 -0.011402 116 60 SH12398 12398 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.290714 105.045738 29.290714 76.755024 53.022869 1.724463223 0.089505 116 61 SH12161 12161 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7691 7709 31.951521 89.938038 60.9447795 1.78493651 0.013283 116 62 SH13339 13339 MT COX1 COX1-ai5a 27.322692 98.976091 27.322692 72.653399 49.9880455 1.698866156 0.011584 116 63 SH17148 17148 YHR012W_8_129473_130440_INTRON_49_167 5' exon 31.725882 121.754481 31.725882 91.028599 61.3772405 1.788007359 -0.014847 116 64 SH20767 20767 YKL002W spliced 33.702267 83.429895 58.566081 1.767646164 0.200881 116 65 SH16404 16404 YER056C-A_5_270183_269421_INTRON_38_434 intron 38.41521 134.826729 38.41521 97.411519 67.9133645 1.831955246 0.01986 116 66 SH17321 17321 YIL004C_9_348502_347943_INTRON_12_142 exon/intron 29.633063 111.889306 29.633063 83.256243 56.444653 1.751622808 0.029997 116 67 SH10583 10583 RUF8 RUF8 841 860 27.666219 67.306626 47.4864225 1.676569452 0.108998 116 68 SH4486 4486 U3b (snR17b) 5' - 6 6 29.685376 102.63979 66.162583 1.820612452 -0.304716 116 69 SH10647 10647 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 121 138 238.220448 331.018638 284.619543 2.454264717 -0.149015 116 70 SH4389 4389 telomerase RNA telomerase 981 1000 25.205892 67.197626 46.201759 1.66465851 -0.067274 116 71 SH5249 5249 snR30 snR30 96 111 28.782674 87.697168 58.239921 1.765220777 -0.087477 116 72 SH1179 1179 His1 3' flank 31.151596 85.863001 58.5072985 1.767210046 0.051079 116 73 SH6031 6031 snR37 snR37 71 88 25.581904 70.621947 48.1019255 1.682162461 -0.087984 116 74 SH14664 14664 MT 21S rRNA 21S rRNA4 30.914779 123.584737 30.914779 93.669958 62.2923685 1.794434844 -0.09376 116 75 SH926 926 Glu3 3' flank 29.431487 90.409014 59.9202505 1.77757362 -0.104754 116 76 SH13777 13777 MT COB intronic 27.589636 108.997676 27.589636 82.40804 54.998838 1.740353514 -0.094376 116 77 SH5916 5916 snR36 snR36 36 55 29.864687 77.690661 53.777674 1.730602014 0.113939 116 78 SH8084 8084 snoRNA cluster 2 3' 27.092589 96.638839 27.092589 70.54625 48.8194195 1.688592611 0.023538 116 79 SH673 673 Gln2 3' flank 29.022876 94.323317 61.6730965 1.790095754 -0.189034 116 80 SH6379 6379 snR43 snR43 136 152 31.236109 80.040564 55.6383365 1.745374137 0.163332 116 81 SH15068 15068 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.015188 100.69116 29.015188 72.675972 50.84558 1.706253206 0.126372 116 82 SH4977 4977 snR10 5' 26.727989 81.01926 53.8736245 1.731376195 -0.137142 116 83 SH21267 21267 YPL081W spliced 38.14772 95.391036 66.769378 1.824577331 0.057343 116 84 SH1742 1742 Leu7 tRNA 6 18 29081.18332 24492.67085 26786.92709 4.427922896 -0.716731 116 85 SH1202 1202 Ile1 5' flank 28.72132 80.480911 54.6011155 1.737201515 0.005059 116 86 SH4766 4766 snR5 snR5 1 20 34.520661 88.805522 61.6630915 1.790025294 0.118259 116 87 SH8941 8941 snR17a / U3a 5' - 7 -9 7 28.749857 77.613942 53.1818995 1.725763845 0.043247 116 88 SH21195 21195 YOL121C spliced 33.040116 78.043827 55.5419715 1.744621291 0.277563 116 89 SH19176 19176 YPL079W_16_406631_407534_INTRON_12_432 intron 28.110382 121.318028 28.110382 94.207646 61.159014 1.786460475 -0.229891 116 90 SH466 466 Asp1 3' flank 45.433403 184.233402 114.8334025 2.060068233 -1.088118 116 91 SH13233 13233 MT COX1 COX1-ai4 29.481702 200.693501 29.481702 172.211799 100.8467505 2.003661909 -1.366086 116 92 SH6918 6918 snR58 5' 31.292601 144.507224 87.8999125 1.943988443 -0.959765 116 93 SH9309 9309 RUF1 RUF1 121 137 33.004279 173.863034 103.4336565 2.014661878 -1.284292 116 94 SH17553 17553 YJL189W_10_75932_76473_INTRON_7_392 intron 26.33167 133.592119 26.33167 108.260449 67.2960595 1.827989635 -0.532468 116 95 SH79 79 Ala2 31-45 31 45 30.12003 86.796152 58.458091 1.766844629 -0.010714 116 96 SH20344 20344 YER093C-A spliced 36.122241 95.838676 65.9804585 1.819415329 0.002249 116 97 SH1545 1545 Leu3 3' flank 32.120496 96.180684 64.15059 1.807200655 -0.105342 116 98 SH15497 15497 YBL092W_2_45639_46364_INTRON_1_333 intron 30.487591 110.505473 30.487591 81.017882 55.7527365 1.746266189 0.110848 116 99 SH12566 12566 MT_15S MT_15S 26.8238 108.607692 26.8238 82.783892 54.803846 1.738811037 -0.151973 116 100 SH6244 6244 snR42 snR42 1 20 45.175313 97.652945 71.414129 1.853784144 0.149842 116 101 SH18317 18317 YML085C_13_99400_97941_INTRON_26_141 exon/intron 28.105108 106.686607 28.105108 79.581499 53.8433035 1.731131698 -0.024554 116 102 SH6338 6338 snR43 5' 28.676286 85.141453 56.9088695 1.755179958 -0.05426 116 103 SH3221 3221 Thr1 5' flank 26.502687 83.793888 55.1482875 1.741532031 -0.186806 116 104 SH18413 18413 YMR125W_13_517538_520445_INTRON_26_347 3' exon 33.277081 113.862004 33.277081 81.584923 57.431002 1.759146393 0.218482 117 2 SH14538 14538 MT 21S rRNA 21S rRNA3 28.161807 108.424429 28.161807 81.262622 54.7122145 1.738084293 -0.041687 117 3 SH15261 15261 MT 9S rRNA 5' / 9S 27.688055 100.711516 27.688055 74.023461 50.855758 1.706340132 0.019238 117 4 SH3301 3301 Thr2 3' flank 26.898014 83.281554 55.089784 1.74107107 -0.152768 117 5 SH16889 16889 YGL189C_7_148970_148233_INTRON_1_368 intron/exon 26.199156 99.064599 26.199156 73.865443 50.0322995 1.699250464 -0.085158 117 6 SH10759 10759 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 681 694 52.073845 120.715171 86.394508 1.936486136 -0.147228 117 7 SH16314 16314 YDR471W_4_1401759_1402553_INTRON_32_415 exon/intron 29.449948 114.588759 29.449948 86.138811 57.7943795 1.761885605 -0.029066 117 8 SH19258 19258 YPL143W_16_282121_282969_INTRON_20_544 exon/intron 28.187873 103.741388 28.187873 76.553515 52.370694 1.719088329 0.019825 117 9 SH6299 6299 snR42 snR42 276 288 32.66346 75.965673 54.3145665 1.734916318 0.303968 117 10 SH3557 3557 Tyr2 tRNA 56 68 31.806136 87.260322 59.533229 1.774759439 0.053937 117 11 SH7369 7369 snR68 snR68 66 90 25.284021 64.533599 44.90881 1.652331547 -0.020381 117 12 SH4407 4407 telomerase RNA telomerase 1071 1083 47.10824 94.178876 70.643558 1.849072565 0.259225 117 13 SH13716 13716 MT tRNAGlu (and 5' processing site for COB) 3' 25.172395 78.037338 25.172395 53.864943 39.518669 1.596802309 0.160295 117 14 SH9104 9104 snR14 / U4 RNA U4 136 153 32.099709 78.986196 55.5429525 1.744628962 0.220347 117 15 SH20561 20561 YHR001W-A spliced 27.161636 83.088094 55.124865 1.741347539 -0.132063 117 16 SH14687 14687 MT 21S rRNA 21S rRNA4 28.211501 98.937937 28.211501 71.726436 49.9689685 1.698700384 0.085555 117 17 SH17605 17605 YJL205C-A_10_50443_50139_INTRON_33_175 intron 28.619456 108.918475 28.619456 81.299019 54.9592375 1.740040699 -0.011762 117 18 SH11283 11283 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3301 3316 33.293024 86.824795 60.0589095 1.778577442 0.122828 117 19 SH13208 13208 MT COX1 COX1-ai4 29.14314 108.104783 29.14314 79.961643 54.5523915 1.736813794 0.03901 117 20 SH15171 15171 MT tRNA Val 3' 27.151763 106.475213 27.151763 80.32345 53.7376065 1.730278319 -0.098867 117 21 SH164 164 Arg2 5' flank 26.716093 75.004116 50.8601045 1.706377248 -0.062209 117 22 SH1021 1021 Gly2 3' flank 28.239409 65.526002 46.8827055 1.671012666 0.174217 117 23 SH16456 16456 YER074W-A_0_5_307649_INTRON_95_196 intron 28.12421 105.703971 28.12421 78.579761 53.3519855 1.727150586 -0.010591 117 24 SH18396 18396 YMR125W_13_517538_520445_INTRON_26_347 intron 28.504161 114.255867 28.504161 86.751706 57.6279335 1.760633046 -0.084363 117 25 SH7517 7517 snR79 5' 95.140844 145.175833 120.1583385 2.079753914 0.133829 117 26 SH4281 4281 telomerase RNA telomerase 441 459 28.992161 74.983914 51.9880375 1.715903424 0.093575 117 27 SH4593 4593 U3b (snR17b) 3' 31.452936 88.356385 59.9046605 1.777460611 0.019681 117 28 SH5329 5329 snR30 snR30 496 512 29.1004 78.683001 53.8917005 1.731521888 0.052385 117 29 SH4255 4255 telomerase RNA telomerase 311 332 26.271555 72.385015 49.328285 1.693096017 -0.060416 117 30 SH6171 6171 snR40 5' 26.486998 79.769578 53.128288 1.725325821 -0.138644 117 31 SH7307 7307 snR66 snR66 26 40 27.047636 80.850938 53.949287 1.731985709 -0.11266 117 32 SH15885 15885 YDL082W_4_308423_309387_INTRON_5_369 intron 29.214817 113.144024 29.214817 84.929207 57.072012 1.756423183 -0.017918 117 33 SH18236 18236 YML026C_13_223828_222987_INTRON_48_448 intron 31.760855 109.952979 31.760855 79.192124 55.4764895 1.744108972 0.202116 117 34 SH21588 21588 copy of SH6045 32.436863 90.941065 61.688964 1.790207477 0.016304 117 35 SH4688 4688 snR4 5' 28.398697 68.479873 48.439285 1.685197724 0.142738 117 36 SH11924 11924 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6506 6522 30.507782 86.761703 58.6347425 1.768155022 0.00702 117 37 SH12105 12105 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7411 7426 58.169064 111.81035 84.989707 1.929366332 0.106198 117 38 SH1780 1780 Leu8 5' flank 32.408364 80.759393 56.5838785 1.752692713 0.198811 117 39 SH8883 8883 LSR1 / U2 RNA U2 1056 1070 30.87391 78.922826 54.898368 1.739559434 0.160805 117 40 SH812 812 Glu1 3' flank 24.671315 69.91631 47.2938125 1.674804325 -0.147647 117 41 SH10182 10182 RUF6 RUF6 756 770 28.889154 94.021105 61.4551295 1.788558138 -0.19025 117 42 SH3689 3689 Val3 5' flank 29.768678 83.793106 56.780892 1.754202211 0.028052 117 43 SH12811 12811 MT COX1 COX1ai1 41.503826 129.573719 41.503826 89.069893 65.2868595 1.814825778 0.268139 117 44 SH7723 7723 snoRNA cluster1 snR77/intergenic 30.689597 124.342258 30.689597 94.652661 62.671129 1.797067518 -0.119689 117 45 SH13224 13224 MT COX1 COX1-ai4 26.95727 93.665108 26.95727 67.707838 47.332554 1.675159939 0.053302 117 46 SH1238 1238 Ile1 3' flank 1124.954461 987.055531 1056.004996 3.023665973 0.106222 117 47 SH3064 3064 Ser3 tRNA 16 30 286.779011 397.590264 342.1846375 2.534260508 -0.21142 117 48 SH4631 4631 snR3 snR3 71 88 28.991179 83.441606 56.2163925 1.749862973 -0.013492 117 49 SH5786 5786 snR35 snR35 116 135 27.390564 80.195067 53.7928155 1.730724276 -0.080766 117 50 SH18417 18417 YMR133W_13_536206_537608_INTRON_1243_1358 intron 29.935037 119.240472 29.935037 90.305435 60.120236 1.779020677 -0.080275 117 51 SH7607 7607 snR189 snR189 106 124 27.276368 77.04571 52.161039 1.717346234 -0.048527 117 52 SH4010 4010 SRP RNA 5' 26.929016 69.904451 48.4167335 1.684995486 0.020646 117 53 SH21263 21263 YPL079W spliced 33.944339 86.873596 60.4089675 1.781101413 0.147889 117 54 SH550 550 Cys1 tRNA 51 66 57.493514 139.268856 98.381185 1.992912049 -0.32485 117 55 SH16378 16378 YER007C-A_5_166884_166236_INTRON_12_114 5' exon 34.894268 130.676404 34.894268 96.782136 65.838202 1.818477962 -0.047205 117 56 SH14243 14243 MT tRNA Ser tRNA 27.475632 111.392457 27.475632 84.916825 56.1962285 1.74970717 -0.132203 117 57 SH323 323 Arg5 5' flank 26.728578 72.140499 49.4345385 1.694030484 -0.023956 117 58 SH7917 7917 snoRNA cluster1 snR72 28.235299 96.246227 28.235299 69.010928 48.6231135 1.686842765 0.124213 117 59 SH17320 17320 YIL004C_9_348502_347943_INTRON_12_142 5' exon 44.130962 137.267043 44.130962 94.136081 69.1335215 1.839688679 0.204531 117 60 SH11107 11107 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2421 2434 9765.69782 6474.748949 8120.223385 3.909567977 -0.037846 117 61 SH6981 6981 snR60 5' - 5 -14 5 29.474729 73.684399 51.579564 1.712477667 0.142183 117 62 SH1262 1262 Ile2 tRNA 6 22 34.239956 89.154649 61.6973025 1.790266176 0.103312 117 63 SH13387 13387 MT COX1 Exon 5b 31.631917 111.261538 31.631917 80.629621 56.130769 1.749200992 0.168842 117 64 SH4045 4045 SRP RNA SRP RNA 116 134 26.837374 73.820844 50.329109 1.701819242 -0.038227 117 65 SH11647 11647 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5121 5141 28.074694 72.574494 50.324594 1.70178028 0.064914 117 66 SH20837 20837 YKR095W-A spliced 29.568348 94.146844 61.857596 1.791393038 -0.161215 117 67 SH6076 6076 snR37 snR37 296 312 120.092377 152.67907 136.3857235 2.134768912 0.31156 117 68 SH16301 16301 YDR450W_4_1359912_1360787_INTRON_48_482 intron 67.235156 194.232632 67.235156 127.997476 97.616316 1.989522414 -0.008895 117 69 SH14097 14097 MT COB Cytbi4 28.403232 101.815824 28.403232 74.412592 51.407912 1.711029965 0.062565 117 70 SH2608 2608 Pro3 5' flank - tRNA5 5 29.283963 83.44296 56.3634615 1.750997657 0.005425 117 71 SH10597 10597 RUF8 RUF8 911 923 41.208071 88.983013 65.095542 1.813551247 0.264268 117 72 SH17191 17191 YHR021C_8_148660_147862_INTRON_4_553 intron 28.646279 110.984361 28.646279 83.338082 55.9921805 1.748127381 -0.034799 117 73 SH15942 15942 YDL125C_4_239605_239018_INTRON_98_208 5' exon 29.718779 104.128306 29.718779 75.409527 52.564153 1.720689671 0.134549 117 74 SH9175 9175 snR7 U5 RNA U5 146 160 39.993069 96.501901 68.247485 1.834086652 0.072329 117 75 SH16609 16609 YFL034C-B_6_63992_63015_INTRON_21_134 intron 27.201596 110.425291 27.201596 84.223695 55.7126455 1.745953781 -0.142884 117 76 SH12235 12235 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.198337 118.128387 30.198337 88.93005 59.5641935 1.774985266 -0.044812 117 77 SH9426 9426 RUF2 5' 27.960728 69.511023 48.7358755 1.687848772 0.098466 117 78 SH21208 21208 YOR096W spliced 34.713136 94.428149 64.5706425 1.810035108 -0.001652 117 79 SH20150 20150 YDL115C spliced 67.302593 129.853176 98.5778845 1.993779494 -0.034428 117 80 SH10598 10598 RUF8 RUF8 916 932 28.94797 79.234709 54.0913395 1.733127736 0.035493 117 81 SH5801 5801 snR35 snR35 191 213 31.033842 98.373523 64.7036825 1.810928999 -0.180536 117 82 SH7497 7497 snR71 3' 26.369943 73.74525 50.0575965 1.699469993 -0.071082 117 83 SH2381 2381 Phe4 5' flank 26.080719 73.869321 49.97502 1.698752977 -0.093934 117 84 SH11128 11128 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2526 2539 105.403737 171.426695 138.415216 2.141183835 -0.039772 117 85 SH10227 10227 RUF6 RUF6 981 998 28.324092 70.352866 49.338479 1.693185757 0.11178 117 86 SH16935 16935 YGR027C_7_534779_534126_INTRON_1_312 intron 26.142288 102.088128 26.142288 76.94584 51.544064 1.712178658 -0.128548 117 87 SH9337 9337 RUF1 RUF1 261 277 28.242086 79.391131 53.8166085 1.730916325 -0.012995 117 88 SH10199 10199 RUF6 RUF6 841 858 25.78524 68.170428 46.977834 1.671892989 -0.038835 117 89 SH16046 16046 YDL191W_4_117665_118518_INTRON_4_494 intron 29.783249 99.214096 29.783249 70.430847 50.107048 1.699898818 0.207017 117 90 SH3337 3337 Thr3 tRNA 31 47 29.391266 89.957496 59.674381 1.775787923 -0.098839 117 91 SH16963 16963 YGR034W_7_555923_556666_INTRON_20_496 exon/intron 29.160964 117.606731 29.160964 89.445767 59.3033655 1.773079341 -0.100543 117 92 SH17594 17594 YJL191W_10_73786_74610_INTRON_11_418 intron 37.564555 176.134223 37.564555 139.569668 88.5671115 1.947272481 -0.730992 117 93 SH17414 17414 YIL106W_9_166412_167441_INTRON_21_105 intron/exon 32.939289 116.167316 32.939289 84.228027 58.583658 1.767776486 0.155504 117 94 SH20030 20030 YBR181C spliced 30.332843 125.601842 77.9673425 1.891912732 -0.698758 117 95 SH7083 7083 snR63 5' 27.719454 109.121045 68.4202495 1.835184654 -0.487623 117 96 SH2229 2229 Phe1 tRNA 21 33 33.686436 96.606842 65.146639 1.813892015 -0.073633 117 97 SH4428 4428 telomerase RNA telomerase 1176 1197 28.11131 67.087689 47.5994995 1.677602386 0.14286 117 98 SH14104 14104 MT COB Cytbi4 31.011693 117.128918 31.011693 87.117225 59.064459 1.77132623 0.022621 117 99 SH4603 4603 snR3 5' 27.279435 68.919232 48.0993335 1.682139059 0.059165 117 100 SH18483 18483 YMR194W_13_651144_651909_INTRON_17_479 5' exon 636.586829 1258.215292 636.586829 622.628463 629.607646 2.799069993 0.088983 117 101 SH16115 16115 YDR064W_4_579453_580447_INTRON_22_560 intron 30.269908 107.137008 30.269908 77.8671 54.068504 1.732944353 0.137062 117 102 SH8802 8802 LSR1 / U2 RNA U2 651 667 30.597782 92.365764 61.481773 1.788746383 -0.085864 117 103 SH20781 20781 YKL006W spliced 28.137436 75.403459 51.7704475 1.714081919 0.031606 117 104 SH9813 9813 RUF4 3' 27.432568 80.777836 54.105202 1.733239023 -0.085129 118 2 SH19011 19011 YOR182C_15_678792_678190_INTRON_4_414 intron 32.315328 131.419827 32.315328 100.104499 66.2099135 1.82092302 -0.181371 118 3 SH13745 13745 MT COB Exon1 27.558381 94.580513 27.558381 68.022132 47.7902565 1.679339361 0.091329 118 4 SH16530 16530 YER131W_5_423587_424307_INTRON_1_361 intron 27.218662 107.401273 27.218662 81.182611 54.2006365 1.734004387 -0.104883 118 5 SH19146 19146 YPL075W_16_412249_415357_INTRON_9_759 intron 31.026678 119.699447 31.026678 89.672769 60.3497235 1.780675285 -0.02146 118 6 SH18453 18453 YMR143W_13_551927_552902_INTRON_25_568 intron 26.731887 114.539308 26.731887 88.807421 57.769654 1.761699766 -0.228762 118 7 SH17259 17259 YHR101C_8_315970_314876_INTRON_111_197 intron 27.298592 113.853404 27.298592 87.554812 57.426702 1.759113876 -0.175013 118 8 SH9784 9784 RUF4 RUF4 696 717 25.683797 68.826217 47.255007 1.674447832 -0.055613 118 9 SH21651 21651 copy of SH8771 29.976319 80.607755 55.292037 1.74266259 0.084064 118 10 SH2184 2184 Met2 tRNA 51 65 77.73188 128.280349 103.0061145 2.012863005 0.137776 118 11 SH13485 13485 MT COX1 intronic 25.617391 96.21272 25.617391 71.595329 48.60636 1.686693099 -0.09845 118 12 SH8617 8617 snR19 / U1 RNA U1 581 597 24.524568 68.006832 46.2657 1.665259137 -0.130658 118 13 SH16856 16856 YGL183C_7_157071_156547_INTRON_4_86 3' exon 46.028305 141.127034 46.028305 96.098729 71.063517 1.851646697 0.198416 118 14 SH3153 3153 Ser4 3' flank 24.913329 62.41556 43.6644445 1.640127939 -0.014075 118 15 SH7126 7126 snR63 snR63 136 150 32.486673 93.806487 63.14658 1.800349834 -0.044897 118 16 SH10035 10035 RUF6 RUF6 21 40 27.533229 73.791676 50.6624525 1.70468621 0.011449 118 17 SH14388 14388 MT 21S rRNA 5' 28.30256 97.883115 28.30256 70.580555 49.4415575 1.694092143 0.107215 118 18 SH17460 17460 YIL148W_9_68708_69528_INTRON_9_442 intron 26.31665 108.568468 26.31665 83.251818 54.784234 1.738655594 -0.193581 118 19 SH787 787 Glu1 5' flank 26.586584 72.464911 49.5257475 1.694831039 -0.038519 118 20 SH13468 13468 MT COX1 intronic 26.648957 105.380799 26.648957 79.731842 53.1903995 1.725833252 -0.126684 118 21 SH11808 11808 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5926 5945 65.00038 117.031978 91.016179 1.959118599 0.126217 118 22 SH17301 17301 YHR203C_8_505526_504472_INTRON_15_283 5' exon 45.569653 139.373036 45.569653 94.803383 70.186518 1.846253697 0.217359 118 23 SH8118 8118 snoRNA cluster 3; 5'/snR41 29.841684 109.50418 29.841684 80.662496 55.25209 1.742348711 0.074903 118 24 SH4916 4916 snR9 5' - 2 2 28.190532 86.436089 57.3133105 1.758255495 -0.10156 118 25 SH4387 4387 telomerase RNA telomerase 971 988 28.72779 83.626063 56.1769265 1.749557975 -0.032899 118 26 SH11242 11242 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3096 3109 159.793279 256.275768 208.0345235 2.318135412 -0.222341 118 27 SH9724 9724 RUF4 RUF4 396 408 34.156541 86.649306 60.4029235 1.781057959 0.159109 118 28 SH159 159 Arg2 5' flank 29.499131 89.361928 59.4305295 1.7740096 -0.08366 118 29 SH16474 16474 YER102W_5_362729_363698_INTRON_1_360 intron 26.80521 111.312511 26.80521 85.507301 56.1562555 1.749398141 -0.185687 118 30 SH8214 8214 snoRNA cluster 3; snR51 49.059264 169.294462 49.059264 121.235198 85.147231 1.930170529 -0.211983 118 31 SH6753 6753 snR50 5' 29.243317 84.960404 57.1018605 1.756650259 -0.017181 118 32 SH12901 12901 MT COX1 intronic/exon2 26.122704 105.291096 26.122704 80.168392 53.145548 1.72546689 -0.169732 118 33 SH9494 9494 RUF2 3' 26.391611 71.256785 48.824198 1.688635118 -0.036561 118 34 SH19556 19556 CBP1 2.2 28.844911 71.538322 50.1916165 1.700631183 0.130835 118 35 SH11032 11032 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2046 2059 912.265051 604.766123 758.515587 2.87996451 0.603045 118 36 SH4869 4869 snR8 snR8 126 140 33.396355 90.513346 61.9548505 1.792075313 0.051277 118 37 SH14895 14895 MT tRNA Ile 5' / tRNA 26.475463 107.01856 26.475463 81.543097 54.00928 1.732468388 -0.161481 118 38 SH12627 12627 MT_15S MT_15S 26.672169 97.892518 26.672169 72.220349 49.446259 1.694133439 -0.029086 118 39 SH14952 14952 MT tRNA Met tRNA 29.376194 116.021193 29.376194 87.644999 58.5105965 1.767234526 -0.059238 118 40 SH18548 18548 YMR230W_13_732413_733140_INTRON_53_462 intron 27.431705 108.089076 27.431705 81.657371 54.544538 1.736751268 -0.096031 118 41 SH6011 6011 snR37 5' 29.500225 83.55236 56.5262925 1.752250501 0.017977 118 42 SH14857 14857 MT tRNA Ser2; tRNA Arg2 tRNA Ser 28.561745 111.892191 28.561745 84.330446 56.4460955 1.751633906 -0.052219 118 43 SH1995 1995 Lys3 5' flank 36.575186 96.971674 66.77343 1.824603686 -0.01119 118 44 SH15241 15241 MT tRNA fMet 5' 25.357436 96.83967 25.357436 72.482234 48.919835 1.689484984 -0.129906 118 45 SH8262 8262 snoRNA cluster4 5'/snR67 29.589394 114.42928 29.589394 85.839886 57.71464 1.761285991 -0.017366 118 46 SH17870 17870 YLL050C_12_40413_39803_INTRON_15_193 intron 37.214482 138.523632 37.214482 102.30915 69.761816 1.843617777 -0.107449 118 47 SH8423 8423 snoRNA cluster 5 snR190/intergenic 29.851213 105.041606 29.851213 76.190393 53.020803 1.724446301 0.132612 118 48 SH4209 4209 telomerase RNA telomerase 81 97 29.76981 74.385201 52.0775055 1.716650173 0.151475 118 49 SH5078 5078 snR11 5' - 9 -9 9 56.148565 124.225275 90.18692 1.955143555 -0.131247 118 50 SH21661 21661 copy of SH9191 27.485795 64.472743 45.979269 1.662562062 0.137675 118 51 SH12284 12284 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.305787 121.499272 29.305787 93.193485 61.249636 1.787103512 -0.157408 118 52 SH20346 20346 YER102W spliced 42.670173 107.282498 74.9763355 1.87492421 -0.089808 118 53 SH19499 19499 YPT1 33.646634 89.750129 61.6983815 1.790273772 0.074854 118 54 SH2709 2709 Pro5 5' flank 27.402412 87.629109 57.5157605 1.759786867 -0.16871 118 55 SH11292 11292 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3346 3364 27.66053 81.343689 54.5021095 1.736413312 -0.076525 118 56 SH17261 17261 YHR101C_8_315970_314876_INTRON_111_197 intron 27.160137 114.754152 27.160137 88.594015 57.877076 1.762506582 -0.196408 118 57 SH1971 1971 Lys2 tRNA 56 68 32.996878 93.740247 63.3685625 1.801873855 -0.030144 118 58 SH14567 14567 MT 21S rRNA 21S rRNA3 50.509126 166.996597 50.509126 117.487471 83.9982985 1.924270489 -0.123412 118 59 SH9487 9487 RUF2 3' 25.956884 67.212035 46.5844595 1.668241061 -0.012472 118 60 SH7162 7162 snR63 3' 29.07217 88.357312 58.714741 1.768747149 -0.085684 118 61 SH13588 13588 MT COX1 3' 27.37871 109.026584 27.37871 82.647874 55.013292 1.740467634 -0.111746 118 62 SH20251 20251 YDR381C-A spliced 27.431613 82.125602 54.7786075 1.738610988 -0.101762 118 63 SH10988 10988 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1826 1841 714.959711 633.858618 674.4091645 2.828923463 0.211186 118 64 SH17390 17390 YIL069C_9_232366_231550_INTRON_4_412 intron 34.109928 125.638625 34.109928 92.528697 63.3193125 1.801536191 0.024629 118 65 SH8479 8479 snoRNA cluster 5 3' 29.506553 110.579514 29.506553 82.072961 55.789757 1.74655447 0.036268 118 66 SH19414 19414 YPR132W_16_794960_795762_INTRON_66_430 5' exon 29.640778 113.886202 29.640778 85.245424 57.443101 1.759237877 -0.004293 118 67 SH2524 2524 Pro1 3' flank 29.567191 74.33801 51.9526005 1.715607291 0.139242 118 68 SH3604 3604 Val1 tRNA 16 31 38.748189 90.616013 64.682101 1.810784118 0.176019 118 69 SH19475 19475 ADH1 27.519757 74.778369 51.149063 1.708837682 -0.00224 118 70 SH7948 7948 snoRNA cluster1 3' 57.626672 171.432479 57.626672 114.805807 86.2162395 1.935589076 0.046112 118 71 SH17179 17179 YHR021C_8_148660_147862_INTRON_4_553 intron 42.062159 142.877149 42.062159 101.81499 71.9385745 1.856961828 0.003988 118 72 SH20847 20847 YLR048W spliced 33.593076 89.870733 61.7319045 1.790509676 0.070765 118 73 SH16097 16097 YDR059C_4_569765_569229_INTRON_48_137 exon/intron 80.674764 206.957059 80.674764 127.282295 103.9785295 2.016943671 0.191395 118 74 SH12694 12694 MT ORF 8 (hypothetical) 5' / ORF8 26.644102 95.219246 26.644102 69.575144 48.109623 1.682231954 0.004693 118 75 SH19870 19870 Negative Control 31.957849 102.495526 67.2266875 1.827541713 -0.238812 118 76 SH21564 21564 copy of SH5224 27.818564 71.550398 49.684481 1.696220758 0.060901 118 77 SH14891 14891 MT tRNA Ile 5' 27.980514 99.917943 27.980514 72.937429 50.4589715 1.702938394 0.053656 118 78 SH7447 7447 snR69 3' 27.670161 74.628964 51.1495625 1.708841923 0.010176 118 79 SH14825 14825 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly 26.977485 111.638363 26.977485 85.660878 56.3191815 1.750656334 -0.175413 118 80 SH2592 2592 Pro3 5' flank 28.492716 87.152158 57.822437 1.762096392 -0.091385 118 81 SH20755 20755 YJR094W-A spliced 32.457875 105.678492 69.0681835 1.839278034 -0.287644 118 82 SH18093 18093 YLR367W_12_855877_857316_INTRON_698_1180 intron 25.603362 88.74573 25.603362 64.142368 44.872865 1.651983799 0.009258 118 83 SH5183 5183 snR13 snR13 71 87 38.720826 107.754056 73.237441 1.864733161 -0.181754 118 84 SH17230 17230 YHR077C_8_255757_252375_INTRON_7_119 intron 31.982398 111.27187 31.982398 80.289472 56.135935 1.749240961 0.19013 118 85 SH11545 11545 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4611 4626 3237.101111 2396.019453 2816.560282 3.449719051 0.098551 118 86 SH17704 17704 YKL081W_11_282533_284097_INTRON_206_531 intron 27.822559 98.926375 27.822559 72.103816 49.9631875 1.698650137 0.053784 118 87 SH12287 12287 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 41.264662 138.254927 41.264662 97.990265 69.6274635 1.842780574 0.066512 118 88 SH21572 21572 copy of SH5387 34.24405 90.512192 62.378121 1.795032288 0.072727 118 89 SH1133 1133 Gly4 3' flank 31.86787 95.859422 63.863646 1.805253709 -0.105297 118 90 SH11152 11152 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2646 2663 3232.886893 2597.146384 2915.016639 3.464641038 -0.030725 118 91 SH12488 12488 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 27.367659 93.054972 27.367659 66.687313 47.027486 1.672351763 0.096973 118 92 SH16294 16294 YDR450W_4_1359912_1360787_INTRON_48_482 intron 28.38057 165.342199 28.38057 137.961629 83.1710995 1.919972443 -0.947089 118 93 SH13950 13950 MT COB Cytbi3 24.959606 103.836049 24.959606 79.876443 52.4180245 1.719480649 -0.253573 118 94 SH20417 20417 YGL030W spliced 30.754674 101.313829 66.0342515 1.819769259 -0.248065 118 95 SH2733 2733 Pro5 tRNA-intron 46 61 42.587949 100.231983 71.409966 1.853758826 0.046419 118 96 SH17882 17882 YLR048W_12_242233_243350_INTRON_91_449 intron 35.982706 131.262583 35.982706 96.279877 66.1312915 1.820407004 -0.010386 118 97 SH15021 15021 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.185886 96.15009 24.185886 72.964204 48.575045 1.686413212 -0.227362 118 98 SH4686 4686 snR4 5' 27.067131 69.65826 48.3626955 1.684510498 0.033883 118 99 SH6935 6935 snR58 snR58 36 52 29.947808 97.673085 63.8104465 1.804891784 -0.201031 118 100 SH17554 17554 YJL189W_10_75932_76473_INTRON_7_392 intron 30.327755 129.975659 30.327755 100.647904 65.4878295 1.816160597 -0.246621 118 101 SH12331 12331 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.435757 118.370331 30.435757 88.934574 59.6851655 1.775866402 -0.034409 118 102 SH3770 3770 Val4 3' flank 27.992478 69.65671 48.824594 1.688638641 0.098642 118 103 SH7362 7362 snR68 snR68 31 45 111.837012 145.229982 128.533497 2.109016324 0.315658 118 104 SH904 904 Glu3 tRNA 31 43 45.527055 118.406341 81.966698 1.91363744 -0.231681 119 2 SH20007 20007 YBR082C spliced 29.374654 80.547016 54.960835 1.740053322 0.046616 119 3 SH5256 5256 snR30 snR30 131 145 40.828705 105.084767 72.956736 1.863065396 -0.085637 119 4 SH10906 10906 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1416 1434 47111.20153 20940.10856 34025.65504 4.531806495 0.161139 119 5 SH5962 5962 snR36 snR36 266 285 31.532884 68.955605 50.2442445 1.70108632 0.335769 119 6 SH5985 5985 snR36 3' 29.275619 79.249291 54.262455 1.734499439 0.056516 119 7 SH20568 20568 YHR010W spliced 36.138122 76.203725 56.1709235 1.749511564 0.43443 119 8 SH406 406 Asn1 3' flank 32.160286 82.284533 57.2224095 1.757566141 0.159584 119 9 SH6520 6520 snR46 snR46 91 108 59.568117 114.547608 87.0578625 1.939808 0.081913 119 10 SH12983 12983 MT COX1 COX1ai2 33.113832 104.051759 33.113832 71.937927 52.5258795 1.720373333 0.385551 119 11 SH12479 12479 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 117.965701 263.643663 117.965701 146.677962 132.3218315 2.121631503 0.35937 119 12 SH9473 9473 RUF2 RUF2 206 224 42.129852 78.143255 60.1365535 1.779138535 0.548251 119 13 SH9629 9629 RUF4 5' 29.745725 79.362418 54.5540715 1.736827169 0.085103 119 14 SH10604 10604 RUF8 946-951 + 3' 946 59.001897 104.099264 81.5505805 1.911427057 0.258069 119 15 SH13834 13834 MT COB Cytbi2 46.807247 135.447299 46.807247 89.640052 68.2236495 1.833934947 0.353916 119 16 SH6589 6589 snR47 snR47 51 70 452.962884 474.859436 463.91116 2.66643482 0.085418 119 17 SH15113 15113 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF3 exon3 25.608845 98.875594 25.608845 74.266749 49.937797 1.69842938 -0.134245 119 18 SH3606 3606 Val1 tRNA 26 41 43.918265 103.071204 73.4947345 1.866256225 0.016126 119 19 SH16495 16495 YER117W_5_396765_397649_INTRON_43_513 intron 32.568506 120.827821 32.568506 89.259315 60.9139105 1.784716481 0.0506 119 20 SH2511 2511 Pro1 tRNA 46 58 299.917903 416.101824 358.0098635 2.553894992 -0.227807 119 21 SH8054 8054 snoRNA cluster 2 intergenic 27.479367 96.593321 27.479367 70.113954 48.7966605 1.688390101 0.056735 119 22 SH10324 10324 RUF7 RUF7 231 247 29.366816 83.738713 56.5527645 1.75245384 0.007206 119 23 SH10813 10813 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 951 972 61.356096 112.848337 87.1022165 1.940029207 0.138918 119 24 SH2900 2900 Pro8 tRNA 21 36 33.641478 74.062601 53.8520395 1.731202156 0.382703 119 25 SH18346 18346 YML124C_13_23684_22049_INTRON_26_323 intron 33.326646 114.192143 33.326646 81.865497 57.5960715 1.760392862 0.215163 119 26 SH10937 10937 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1571 1584 301.632649 328.715006 315.1738275 2.498550146 0.160201 119 27 SH275 275 Arg4 5' flank 28.807483 76.682041 52.744762 1.722179337 0.059114 119 28 SH18303 18303 YML073C_13_124172_123227_INTRON_16_430 intron 30.15359 111.882696 30.15359 82.729106 56.441348 1.751597378 0.065017 119 29 SH7007 7007 snR60 3' 29.996314 96.145168 63.070741 1.799827933 -0.174474 119 30 SH13711 13711 MT tRNAGlu (and 5' processing site for COB) 3' 27.323753 103.120855 27.323753 76.797102 52.0604275 1.71650773 -0.04202 119 31 SH2907 2907 Pro8 tRNA 56 71 97.02589 168.358915 132.6924025 2.122846057 -0.10425 119 32 SH20516 20516 YGR029W spliced 31.873594 87.2448 59.559197 1.774948834 0.057048 119 33 SH10365 10365 RUF7 RUF7 436 452 31.926531 89.911157 60.918844 1.784751654 0.012699 119 34 SH14752 14752 MT ORF11; tRNA Leu; tRNA Gln ORF11 27.129679 111.709276 27.129679 85.579597 56.354638 1.750929664 -0.163862 119 35 SH12826 12826 MT COX1 COX1ai1 31.369783 118.566492 31.369783 88.196709 59.783246 1.776579492 0.018936 119 36 SH14979 14979 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 26.45065 105.614102 26.45065 80.163452 53.307051 1.726784658 -0.146163 119 37 SH3759 3759 Val4 tRNA 21 33 33.435306 83.388328 58.411817 1.766500716 0.191008 119 38 SH19199 19199 YPL081W_16_404945_406039_INTRON_8_508 intron 29.151329 97.05378 29.151329 68.902451 49.02689 1.690434345 0.187209 119 39 SH7066 7066 snR62 3' 34.280306 90.718376 62.499341 1.795875438 0.069011 119 40 SH16041 16041 YDL191W_4_117665_118518_INTRON_4_494 intron 29.983954 105.529149 29.983954 76.545195 53.2645745 1.726438462 0.13632 119 41 SH1200 1200 Ile1 5' flank 30.000749 71.160478 50.5806135 1.703984093 0.210408 119 42 SH5222 5222 snR30 5' 27.197399 74.012778 50.6050885 1.704194189 -0.015056 119 43 SH10684 10684 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 306 322 28.870816 81.107531 54.9891735 1.740277192 0.007075 119 44 SH15742 15742 YCR028C-A_3_173432_172942_INTRON_243_325 intron 26.134281 94.26219 26.134281 69.127909 47.631095 1.677890566 -0.026325 119 45 SH14634 14634 MT 21S rRNA Sce1 endonuc 27.764156 97.673481 27.764156 70.909325 49.3367405 1.693170454 0.065767 119 46 SH2029 2029 Lys3 91-96 + 3' flank 91 108 31.62734 78.985798 55.306569 1.742776717 0.200513 119 47 SH478 478 Asp2 5' flank 27.457385 79.263913 53.360649 1.727221103 -0.064482 119 48 SH6234 6234 snR42 5' 40.108279 90.634409 65.371344 1.815387414 0.204082 119 49 SH15042 15042 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.212015 103.7708 27.212015 77.558785 52.3854 1.719210264 -0.059623 119 50 SH712 712 Gln3 3' flank 27.501904 68.572221 48.0370625 1.681576442 0.07965 119 51 SH2856 2856 Pro7 tRNA 86 100 36.433002 86.679156 61.556079 1.789270948 0.213557 119 52 SH13171 13171 MT COX1 intronic 26.812008 101.351207 26.812008 75.539199 51.1756035 1.709062973 -0.062129 119 53 SH19540 19540 CBP1 1.2 34.083067 84.793303 59.438185 1.774065539 0.190843 119 54 SH3132 3132 Ser4 tRNA 66 80 26.492965 76.517795 51.50538 1.711852596 -0.097534 119 55 SH15935 15935 YDL115C_4_255042_253994_INTRON_1_88 intron 27.653996 94.417398 27.653996 67.763402 47.708699 1.678597574 0.101656 119 56 SH2967 2967 Ser1 tRNA 66 78 32.835947 84.472752 58.6543495 1.768300223 0.14681 119 57 SH11422 11422 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3996 4013 274.542222 267.434355 270.9882885 2.432950522 0.376821 119 58 SH4585 4585 U3b (snR17b) 3' 26.100342 78.340844 52.220593 1.717841799 -0.148882 119 59 SH3881 3881 RNaseP 3' 28.862203 80.864948 54.8635755 1.739284107 0.009512 119 60 SH10732 10732 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 546 559 31.915726 83.357308 57.636517 1.760697728 0.129329 119 61 SH4409 4409 telomerase RNA telomerase 1081 1100 27.609011 70.392427 49.000719 1.690202453 0.061996 119 62 SH6052 6052 snR37 snR37 176 194 32.272685 83.959724 58.1162045 1.764297243 0.133076 119 63 SH20551 20551 YGR225W spliced 27.42439 76.086385 51.7553875 1.713955565 -0.025785 119 64 SH839 839 Glu2 5' flank 27.358199 77.624516 52.4913575 1.720087804 -0.050376 119 65 SH19987 19987 YBL092W spliced 34.344561 93.318941 63.831751 1.805036758 0.013219 119 66 SH3791 3791 RNaseP 5' flank 27.263598 82.039717 54.6516575 1.737603338 -0.11229 119 67 SH4229 4229 telomerase RNA telomerase 181 198 27.057643 75.047711 51.052677 1.70801852 -0.038303 119 68 SH1169 1169 His1 66-72 + 3' flank 66 26.902282 71.981849 49.4420655 1.694096606 -0.009368 119 69 SH3780 3780 Val4 3' flank 26.78167 77.107729 51.9446995 1.715541238 -0.084031 119 70 SH13169 13169 MT COX1 intronic 28.629887 106.88724 28.629887 79.257353 53.94362 1.731940087 0.014389 119 71 SH19670 19670 SIR1 2.4 93.384285 149.070428 121.2273565 2.083600635 0.066089 119 72 SH1876 1876 Leu9 3' flank 28.571735 66.793326 47.6825305 1.678359295 0.178366 119 73 SH7118 7118 snR63 snR63 96 117 26.919384 79.585349 53.2523665 1.726338912 -0.105819 119 74 SH4023 4023 SRP RNA SRP RNA 6 22 36.644685 89.166834 62.9057595 1.79869041 0.16105 119 75 SH8130 8130 snoRNA cluster 3; snR41 27.387751 112.231779 27.387751 85.844028 56.6158895 1.752938335 -0.149113 119 76 SH12483 12483 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 32.198065 113.057546 32.198065 81.859481 57.028773 1.756094028 0.169167 119 77 SH9455 9455 RUF2 RUF2 116 133 29.838306 74.486877 52.1625915 1.71735916 0.154437 119 78 SH9713 9713 RUF4 RUF4 341 359 29.534309 76.300409 52.917359 1.723598161 0.111058 119 79 SH10538 10538 RUF8 RUF8 616 633 28.792012 79.97321 54.382611 1.735460055 0.016026 119 80 SH19780 19780 Negative Control 36.808346 86.393334 61.60084 1.789586634 0.229025 119 81 SH21926 21926 copy of SH20401 31.603966 76.616361 54.1101635 1.733278846 0.234536 119 82 SH21463 21463 copy of SH809 29.124556 79.501204 54.31288 1.734902832 0.04359 119 83 SH4797 4797 snR5 snR5 156 177 26.942986 84.661625 55.8023055 1.746652142 -0.166076 119 84 SH11352 11352 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3646 3661 16480.20494 12204.20593 14342.20544 4.156615939 -0.358069 119 85 SH728 728 Gln4 5' flank 34.335903 100.873858 67.6048805 1.829978049 -0.145079 119 86 SH21504 21504 copy of SH2796 80.085086 153.330839 116.7079625 2.067100487 -0.153596 119 87 SH11676 11676 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5266 5279 84.312507 119.176213 101.74436 2.007510344 0.358133 119 88 SH13346 13346 MT COX1 COX1-ai5a 25.713719 92.984959 25.713719 68.27124 46.9924795 1.672028361 -0.045602 119 89 SH10611 10611 RUF8 3' 32.234447 87.885396 60.0599215 1.77858476 0.060798 119 90 SH7386 7386 snR68 3' 29.851141 93.04678 61.4489605 1.788514541 -0.130293 119 91 SH10494 10494 RUF8 RUF8 396 414 29.781473 90.48141 60.1314415 1.779101615 -0.09017 119 92 SH9409 9409 RUF1 3' 27.547003 62.659216 45.1031095 1.654206484 0.169799 119 93 SH18944 18944 YOL127W_15_80347_81189_INTRON_14_427 intron 26.34242 101.685055 26.34242 76.342635 51.3425275 1.710477244 -0.106309 119 94 SH16311 16311 YDR450W_4_1359912_1360787_INTRON_48_482 3' exon 27.163867 98.448315 27.163867 72.284448 49.7241575 1.696567433 0.005242 119 95 SH18185 18185 YML024W_13_225889_226697_INTRON_4_401 5' exon 24.613966 88.068136 24.613966 64.45417 44.534068 1.648692368 -0.069333 119 96 SH19580 19580 AEP2/ATP13 0.6 30.427319 92.29758 61.3624495 1.787902688 -0.092199 119 97 SH17467 17467 YIL148W_9_68708_69528_INTRON_9_442 intron 38.966026 126.540209 38.966026 88.574183 63.7701045 1.804617129 0.227091 119 98 SH1067 1067 Gly3 71 + 3' flank 71 28.069787 64.598974 46.3343805 1.665903361 0.176287 119 99 SH11503 11503 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4401 4417 14592.18506 8826.857944 11709.5215 4.068539148 -0.004592 119 100 SH9517 9517 RUF3 5' 30.856578 72.676173 51.7663755 1.714047758 0.242304 119 101 SH9562 9562 RUF3 RUF3 196 212 28.573703 80.815878 54.6947905 1.737945963 -0.008809 119 102 SH2799 2799 Pro6 tRNA 86 100 36.071176 89.120766 62.595971 1.796546381 0.148616 119 103 SH16237 16237 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 95.987312 261.614235 95.987312 166.626923 131.3071175 2.118288268 -0.098389 119 104 SH18376 18376 YMR116C_13_500687_499455_INTRON_538_810 5' exon 29.037986 114.156833 29.037986 86.118847 57.5784165 1.760259717 -0.047562 120 2 SH11090 11090 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2336 2349 233.538923 239.075739 236.307331 2.373477195 0.358888 120 3 SH1832 1832 Leu9 5' flank 27.204788 89.039466 58.122127 1.764341499 -0.198334 120 4 SH15738 15738 YCR028C-A_3_173432_172942_INTRON_243_325 5' exon 27.470207 104.716284 27.470207 78.246077 52.858142 1.723111893 -0.050663 120 5 SH17122 17122 YHR010W_8_126513_127484_INTRON_32_592 intron 27.474074 106.1962 27.474074 79.722126 53.5981 1.729149395 -0.069109 120 6 SH20017 20017 YBR089C-A spliced 29.57283 98.637442 64.105136 1.806892826 -0.233094 120 7 SH6345 6345 snR43 5' 29.750876 84.154981 56.9529285 1.75551606 0.020585 120 8 SH3633 3633 Val2 5' flank 27.84146 88.26614 58.0538 1.763830652 -0.146013 120 9 SH7502 7502 snR71 3' 25.531908 85.369265 55.4505865 1.743906144 -0.275767 120 10 SH18445 18445 YMR142C_13_551206_550205_INTRON_5_406 intron 33.553236 173.209134 33.553236 140.655898 87.104567 1.940040926 -0.845191 120 11 SH19041 19041 YOR234C_15_779404_778554_INTRON_20_546 intron 30.130971 175.937531 30.130971 146.80656 88.4687655 1.946789967 -1.024207 120 12 SH21499 21499 copy of SH2549 27.044772 119.04477 73.044771 1.863589132 -0.685437 120 13 SH2441 2441 Phe5 5' flank 36.831433 189.220831 113.026132 2.053178865 -1.34626 120 14 SH680 680 Gln3 5' flank 27.422722 83.459238 55.44098 1.743830898 -0.1185 120 15 SH4865 4865 snR8 snR8 106 121 30.598358 82.455981 56.5271695 1.752257239 0.08973 120 16 SH11022 11022 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1996 2009 36293.44233 19606.64256 27950.04245 4.446382472 -0.07597 120 17 SH12945 12945 MT COX1 COX1ai2 30.053315 113.362625 30.053315 84.30931 57.1813125 1.75725412 0.031288 120 18 SH13112 13112 MT COX1 COX1ai3 27.729756 99.946174 27.729756 73.216418 50.473087 1.703059868 0.032656 120 19 SH11452 11452 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4146 4164 14155.01078 11261.72172 12708.36625 4.104089722 -0.429451 120 20 SH140 140 Arg1 3' flank 27.262971 68.398167 47.830569 1.679705547 0.065284 120 21 SH19938 19938 YBL027W spliced 42.488685 100.540301 71.514493 1.854394064 0.038189 120 22 SH18916 18916 YOL120C_15_94401_93394_INTRON_113_559 3' exon 28.264659 109.424717 28.264659 82.160058 55.2123585 1.742036299 -0.045814 120 23 SH15690 15690 YBR191W_2_606228_607098_INTRON_12_399 3' exon 29.660244 108.873519 29.660244 80.213275 54.9367595 1.739863039 0.069004 120 24 SH11278 11278 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3276 3296 25.661701 67.53949 46.6005955 1.668391466 -0.038932 120 25 SH18816 18816 YNL302C_14_62942_61957_INTRON_21_571 intron 28.611918 111.954954 28.611918 84.343036 56.477477 1.751875287 -0.049061 120 26 SH10003 10003 RUF5-1 3' 27.318781 86.922457 57.120619 1.756792905 -0.166363 120 27 SH9934 9934 RUF5-1 RUF5-1 476 495 28.022075 71.327668 49.6748715 1.696136752 0.07793 120 28 SH5906 5906 snR36 5' - 3 -14 3 30.744037 89.424222 60.0841295 1.778759773 -0.029414 120 29 SH4279 4279 telomerase RNA telomerase 431 448 28.48767 78.224585 53.3561275 1.727184302 0.018139 120 30 SH13622 13622 MT ATP6 ATP6 28.457005 114.370836 28.457005 86.913831 57.685418 1.761066044 -0.089352 120 31 SH18749 18749 YNL162W_14_331319_332151_INTRON_5_516 intron 28.201814 102.735133 28.201814 75.533319 51.8675665 1.714895872 0.034189 120 32 SH2421 2421 Phe4 3' flank 30.32477 87.573172 58.948971 1.770476229 -0.015435 120 33 SH17602 17602 YJL205C-A_10_50443_50139_INTRON_33_175 intron 30.099219 102.079725 30.099219 72.980506 51.5398625 1.712143256 0.191297 120 34 SH15594 15594 YBR089C-A_2_426588_426148_INTRON_1_114 exon/intron 29.676689 110.828889 29.676689 82.1522 55.9144445 1.747524015 0.046134 120 35 SH16124 16124 YDR064W_4_579453_580447_INTRON_22_560 intron 31.133114 120.389078 31.133114 90.255964 60.694539 1.783149617 -0.026904 120 36 SH1215 1215 Ile1 tRNA 36 50 94.888685 151.345846 123.1172655 2.090318961 0.05679 120 37 SH9486 9486 RUF2 3' 26.917917 73.919967 50.418942 1.702593728 -0.033744 120 38 SH18527 18527 YMR225C_13_721402_720959_INTRON_59_205 intron 28.595112 115.526708 28.595112 87.931596 58.263354 1.765395482 -0.100357 120 39 SH14008 14008 MT COB intronic 29.329917 117.294622 29.329917 88.964705 59.147311 1.771935005 -0.084468 120 40 SH7219 7219 snR64 3' 29.96409 85.507445 57.7357675 1.761444943 0.005479 120 41 SH16870 16870 YGL187C_7_150529_149708_INTRON_1_342 intron 27.871561 114.399875 27.871561 87.528314 57.6999375 1.761175343 -0.135573 120 42 SH6618 6618 snR48 5' 30.09463 73.301993 51.6983115 1.713476359 0.186609 120 43 SH21319 21319 YPL249C-A spliced 29.582168 86.562526 58.072347 1.763969378 -0.030661 120 44 SH20535 20535 YGR148C spliced 35.76171 104.11366 69.937685 1.844711253 -0.176275 120 45 SH13290 13290 MT COX1 COX1-ai5a 30.297717 132.167658 30.297717 102.869941 66.583829 1.823368766 -0.291812 120 46 SH755 755 Gln4 tRNA 46 58 36.437806 96.291237 66.3645215 1.821935967 0.000117 120 47 SH7136 7136 snR63 snR63 186 202 459.680781 758.365646 609.0232135 2.784633846 -0.645938 120 48 SH7686 7686 snoRNA cluster1 intergenic 28.776013 115.984701 28.776013 88.208688 58.4923505 1.767099074 -0.096784 120 49 SH17692 17692 YKL006W_11_431544_432358_INTRON_130_527 intron 27.409488 111.348658 27.409488 84.93917 56.174329 1.749537893 -0.137008 120 50 SH11840 11840 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6086 6101 173.149084 382.709791 277.9294375 2.443934548 -0.785727 120 51 SH7292 7292 snR66 5' 27.541202 70.636239 49.0887205 1.690981712 0.053943 120 52 SH312 312 Arg4 3' flank 32.135596 87.884377 60.0099865 1.778223529 0.056705 120 53 SH7807 7807 snoRNA cluster1 intergenic 27.719068 104.93722 27.719068 78.218152 52.96861 1.724018576 -0.033313 120 54 SH17140 17140 YHR010W_8_126513_127484_INTRON_32_592 intron 27.961428 113.436175 27.961428 86.474747 57.2180875 1.757533338 -0.117383 120 55 SH3087 3087 Ser3 3' flank 32.456284 90.200632 61.328458 1.787662045 0.029752 120 56 SH11999 11999 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6881 6899 34.232888 86.131582 60.182235 1.779468312 0.172489 120 57 SH11867 11867 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6221 6238 310.316762 394.376952 352.346857 2.546970402 -0.097952 120 58 SH10825 10825 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1011 1030 33.901248 75.977644 54.939446 1.739884276 0.353507 120 59 SH18632 18632 YNL096C_14_444312_443395_INTRON_145_489 intron 27.260473 116.001313 27.260473 89.74084 58.5006565 1.76716074 -0.202337 120 60 SH8585 8585 snR19 / U1 RNA U1 421 438 29.930722 82.809347 56.3700345 1.751048301 0.053588 120 61 SH9615 9615 RUF3 3' 27.657074 88.536112 58.096593 1.764150664 -0.161591 120 62 SH16461 16461 YER093C-A_5_348396_347908_INTRON_125_199 5' exon 34.577272 113.205857 34.577272 79.628585 57.1029285 1.756658381 0.307328 120 63 SH5352 5352 snR30 3' 29.726334 76.851988 53.289161 1.726638883 0.116057 120 64 SH9978 9978 RUF5-1 RUF5-1 696 715 29.717429 93.920385 61.818907 1.791121322 -0.150758 120 65 SH10243 10243 RUF6 3' 27.317715 76.031419 51.674567 1.713276846 -0.032404 120 66 SH9429 9429 RUF2 5' - 8 -14 8 31.616102 91.841962 61.729032 1.790489467 -0.033248 120 67 SH19393 19393 YPR043W_16_654161_654842_INTRON_3_405 intron/exon 28.884907 110.047292 28.884907 82.162385 55.523646 1.744477977 -0.004943 120 68 SH4105 4105 SRP RNA SRP RNA 416 428 35.680993 92.905852 64.2934225 1.808166545 0.054857 120 69 SH14398 14398 MT 21S rRNA 21S rRNA3 26.751779 101.837912 26.751779 76.086133 51.418956 1.711123255 -0.073383 120 70 SH18133 18133 YLR406C_12_931752_931062_INTRON_58_406 exon/intron 29.268968 114.560308 29.268968 86.29134 57.780154 1.761778695 -0.040053 120 71 SH21938 21938 copy of SH19621 27.101337 77.48722 52.2942785 1.718454175 -0.066377 120 72 SH6487 6487 snR46 5' 27.455484 73.604935 50.5302095 1.703551099 0.008435 120 73 SH645 645 Gln2 tRNA 11 28 27.787561 88.362395 58.074978 1.763989054 -0.150756 120 74 SH4792 4792 snR5 snR5 131 150 27.713341 67.881346 47.7973435 1.67940376 0.104116 120 75 SH10285 10285 RUF7 RUF7 36 53 29.620825 100.961721 65.291273 1.814855136 -0.273102 120 76 SH17754 17754 YKL157W_11_154993_158183_INTRON_282_664 intron 29.135027 113.819456 29.135027 85.684429 57.409728 1.758985489 -0.035274 120 77 SH6133 6133 snR39B snR39B 6 20 74.616982 131.057059 102.8370205 2.012149485 0.055741 120 78 SH950 950 Gly1 tRNA 1 15 697.136464 1627.166885 1162.151675 3.065262812 -1.308002 120 79 SH17685 17685 YKL006W_11_431544_432358_INTRON_130_527 intron 28.431372 122.764214 28.431372 95.332842 61.882107 1.791565092 -0.233062 120 80 SH6439 6439 snR45 snR45 41 57 32.262649 91.297258 61.7799535 1.790847577 0.003049 120 81 SH10778 10778 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 776 793 29.4749 90.878048 60.176474 1.779426737 -0.110786 120 82 SH10983 10983 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1801 1821 47.748487 83.374789 65.561638 1.816649796 0.519747 120 83 SH10168 10168 RUF6 RUF6 686 700 33.547639 103.606661 68.57715 1.836179432 -0.219211 120 84 SH12386 12386 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.534706 98.505201 28.534706 70.970495 49.7526005 1.696815786 0.117659 120 85 SH5920 5920 snR36 snR36 56 73 25.756975 71.611786 48.6843805 1.687389648 -0.088206 120 86 SH21309 21309 YPL241C spliced 33.102875 92.111565 62.60722 1.79662442 0.008189 120 87 SH18909 18909 YOL120C_15_94401_93394_INTRON_113_559 intron 33.355751 121.284084 33.355751 88.928333 61.142042 1.786339939 0.086112 120 88 SH14141 14141 MT COB intronic 26.430059 97.399268 26.430059 71.969209 49.199634 1.691961872 -0.043304 120 89 SH7138 7138 snR63 snR63 196 213 30.580301 80.708552 55.6444265 1.745421671 0.120399 120 90 SH3238 3238 Thr1 tRNA 46 62 30.114498 78.197807 54.1561525 1.733647803 0.12312 120 91 SH4384 4384 telomerase RNA telomerase 956 973 32.017686 89.677829 60.8477575 1.784244577 0.020534 120 92 SH390 390 Asn1 31-47 31 47 31.880858 88.569263 60.2250605 1.779777245 0.034045 120 93 SH719 719 Gln3 3' flank 45.350234 140.228295 92.7892645 1.967497732 -0.568571 120 94 SH21708 21708 copy of SH11083 17999.42881 12334.01153 15166.72017 4.180891674 -0.259729 120 95 SH8537 8537 snR19 / U1 RNA U1 181 202 27.405334 74.041697 50.7235155 1.705209346 -0.000763 120 96 SH9290 9290 RUF1 RUF1 26 42 26.679141 80.275887 53.477514 1.72817121 -0.13136 120 97 SH20648 20648 YIL004C spliced 30.312438 90.454283 60.3833605 1.780917279 -0.066054 120 98 SH1429 1429 Leu2 5' flank 30.78871 85.156703 57.9727065 1.763223576 0.048174 120 99 SH1958 1958 Lys2 5' flank - tRNA9 9 29.911677 74.805605 52.358641 1.718988366 0.15479 120 100 SH14387 14387 MT 21S rRNA 5' 26.453019 104.222308 26.453019 78.769289 52.611154 1.721077828 -0.128429 120 101 SH5251 5251 snR30 snR30 106 122 26.576729 73.340976 49.9588525 1.698612455 -0.050764 120 102 SH798 798 Glu1 tRNA 6 22 773.807022 652.621282 713.214152 2.853219952 0.268015 120 103 SH586 586 Gln1 5' flank 27.848592 73.940546 50.894569 1.706671441 0.031448 120 104 SH3191 3191 Ser5 76-82 + 3' flank 76 27.642969 69.837091 48.74003 1.687885792 0.071964 121 2 SH7523 7523 snR79 5' 26.160438 75.181082 50.67076 1.704757418 -0.104947 121 3 SH13240 13240 MT COX1 COX1-ai4 27.006872 97.794053 27.006872 71.787181 49.3970265 1.693700807 0.000703 121 4 SH10749 10749 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 631 646 34.168882 86.573476 60.371179 1.780829657 0.161195 121 5 SH12680 12680 MT tRNA Trp tRNA 27.695731 115.260796 27.695731 88.565065 58.130398 1.764403296 -0.159286 121 6 SH2295 2295 Phe2 tRNA 71 87 41.103966 100.349717 70.7268415 1.849584264 0.014226 121 7 SH1407 1407 Leu1 106-115 + 3' flank 106 27.91937 78.675545 53.2974575 1.726706492 -0.025584 121 8 SH11902 11902 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6396 6411 145.771009 173.980627 159.875818 2.20378278 0.318387 121 9 SH18280 18280 YML056C_13_164176_162194_INTRON_461_868 3' exon 30.425773 121.740785 30.425773 92.315012 61.3703925 1.787958901 -0.092559 121 10 SH17813 17813 YKR057W_11_551293_551878_INTRON_25_346 intron 30.050035 140.935936 30.050035 111.885901 70.967968 1.85106237 -0.469432 121 11 SH14313 14313 MT VAR1 includes 5’ processing site VAR1 27.179184 117.11993 27.179184 90.940746 59.059965 1.771293185 -0.221262 121 12 SH2551 2551 Pro2 5' flank - tRNA7 7 37.000043 115.351946 76.1759945 1.881818133 -0.35911 121 13 SH3149 3149 Ser4 3' flank 32.51274 143.562107 88.0374235 1.944667324 -0.913672 121 14 SH9260 9260 snR6 / U6 RNA 3' 26.821456 71.482401 49.1519285 1.691540562 -0.008481 121 15 SH16190 16190 YDR367W_4_1212837_1213603_INTRON_31_131 3' exon 27.652808 109.152958 27.652808 82.50015 55.076479 1.740966168 -0.091185 121 16 SH7748 7748 snoRNA cluster1 intergenic/snR76 28.236131 97.322804 28.236131 70.086673 49.161402 1.69162426 0.109427 121 17 SH7839 7839 snoRNA cluster1 snR74 30.548532 124.333835 30.548532 94.785303 62.6669175 1.797038333 -0.128022 121 18 SH4262 4262 telomerase RNA telomerase 346 363 30.15189 79.626823 54.8893565 1.739488139 0.107327 121 19 SH8134 8134 snoRNA cluster 3; snR41 33.971671 113.101456 33.971671 80.129785 57.050728 1.756261191 0.273972 121 20 SH17689 17689 YKL006W_11_431544_432358_INTRON_130_527 intron 26.939423 109.607909 26.939423 83.668486 55.3039545 1.742756187 -0.15451 121 21 SH14278 14278 MT VAR1 includes 5’ processing site VAR1 24.718294 100.347535 24.718294 76.629241 50.6737675 1.704783194 -0.232457 121 22 SH4606 4606 snR3 5' 27.095907 71.445105 49.270506 1.692587022 0.011625 121 23 SH9578 9578 RUF3 RUF3 276 293 27.319939 86.393066 56.8565025 1.754780141 -0.160167 121 24 SH16339 16339 YDR500C_4_1450856_1450201_INTRON_8_396 intron 38.535313 132.538649 38.535313 95.003336 66.7693245 1.824576983 0.074061 121 25 SH5621 5621 snR34 snR34 26 42 30.36117 84.314069 57.3376195 1.758439658 0.044841 121 26 SH13623 13623 MT ATP6 ATP6 27.023505 105.742146 27.023505 79.718641 53.371073 1.727305934 -0.100221 121 27 SH2558 2558 Pro2 tRNA-exon/intron 26 38 30.279114 75.628126 52.95362 1.723895655 0.166845 121 28 SH21629 21629 copy of SH7929 30.80178 88.455267 59.6285235 1.775454056 -0.010049 121 29 SH16362 16362 YEL012W_5_131772_132551_INTRON_6_128 intron 28.778946 113.191582 28.778946 85.412636 57.095791 1.756604094 -0.050711 121 30 SH13478 13478 MT COX1 intronic 28.939088 103.746963 28.939088 75.807875 52.3734815 1.719111444 0.079181 121 31 SH1745 1745 Leu7 tRNA 21 33 109.483975 183.168165 146.32607 2.165321709 -0.108851 121 32 SH14875 14875 MT tRNA Ala 5' 28.164719 102.845037 28.164719 75.680318 51.9225185 1.71535575 0.029763 121 33 SH12886 12886 MT COX1 COX1ai1 27.942127 105.708173 27.942127 78.766046 53.3540865 1.727167689 -0.0252 121 34 SH21532 21532 copy of SH3752 29.83099 78.809965 54.3204775 1.734963579 0.09749 121 35 SH15446 15446 YBL087C_2_60732_59815_INTRON_43_546 intron 26.325748 98.47423 26.325748 73.148482 49.737115 1.69668059 -0.066516 121 36 SH1091 1091 Gly4 5' flank 47.678187 111.583514 79.6308505 1.901081354 -0.072209 121 37 SH14421 14421 MT 21S rRNA 21S rRNA3 29.003295 107.227895 29.003295 79.2246 54.1139475 1.733309216 0.039219 121 38 SH10902 10902 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1396 1414 17511.10135 11444.05888 14477.58012 4.160695977 -0.177253 121 39 SH11775 11775 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5761 5777 128.391777 172.584457 150.488117 2.177502208 0.181126 121 40 SH10560 10560 RUF8 RUF8 726 744 27.276305 81.330797 54.303551 1.73482823 -0.102723 121 41 SH15331 15331 YAL003W_1_142172_143158_INTRON_81_446 3' exon 32.61891 109.158809 32.61891 77.539899 55.0794045 1.740989236 0.270411 121 42 SH17508 17508 YJL136C_10_156971_156248_INTRON_25_484 intron 60.572772 173.203792 60.572772 113.63102 87.101896 1.940027609 0.113341 121 43 SH6729 6729 snR49 3' 27.598456 73.338292 50.468374 1.703019313 0.02192 121 44 SH12656 12656 MT_15S MT_15S 29.245756 103.322251 29.245756 75.076495 52.1611255 1.717346954 0.108749 121 45 SH14917 14917 MT tRNA Tyr tRNA 28.465504 103.743831 28.465504 76.278327 52.3719155 1.719098458 0.041898 121 46 SH3826 3826 RNaseP RNaseP 96 110 54.478838 119.172373 86.8256055 1.938647821 -0.079478 121 47 SH1567 1567 Leu4 tRNA 6 18 34444.58589 36565.38716 35504.98653 4.550289352 -1.127926 121 48 SH3616 3616 Val1 3' flank 31.753789 73.064654 52.4092215 1.719407709 0.29097 121 49 SH2969 2969 Ser1 76-83 + 3' flank 76 28.90959 73.704874 51.307232 1.710178585 0.105427 121 50 SH14037 14037 MT COB Cytbi4 30.427722 104.074779 30.427722 74.647057 52.5373895 1.72046849 0.189143 121 51 SH18943 18943 YOL127W_15_80347_81189_INTRON_14_427 exon/intron 30.399888 120.762394 30.399888 91.362506 60.881197 1.784483183 -0.077654 121 52 SH733 733 Gln4 5' flank 30.372285 84.243888 57.3080865 1.758215908 0.04662 121 53 SH1834 1834 Leu9 5' flank 30.471738 77.157731 53.8147345 1.730901202 0.158746 121 54 SH365 365 Asn1 5' flank 28.076323 81.335888 54.7061055 1.738035799 -0.048317 121 55 SH20116 20116 YDL075W spliced 30.195758 83.665244 56.930501 1.755345006 0.04948 121 56 SH3075 3075 Ser3 tRNA 71 83 32.247607 85.232794 58.7402005 1.768935425 0.108755 121 57 SH213 213 Arg3 5' flank 27.434319 80.800215 54.117267 1.733335856 -0.085286 121 58 SH7475 7475 snR71 5' - 11 -9 11 27.494314 70.492084 48.993199 1.690135798 0.052622 121 59 SH16768 16768 YGL103W_7_310965_311925_INTRON_50_560 exon/intron 32.346123 132.705548 32.346123 101.359425 66.852774 1.825119433 -0.205855 121 60 SH10074 10074 RUF6 RUF6 216 230 30.097333 80.268582 55.1829575 1.741804973 0.095877 121 61 SH7952 7952 snoRNA cluster1 3' 28.876078 118.565005 28.876078 90.688927 59.7825025 1.776574091 -0.135035 121 62 SH4083 4083 SRP RNA SRP RNA 306 318 32.237786 82.724984 57.481385 1.759527224 0.154547 121 63 SH14566 14566 MT 21S rRNA 21S rRNA3 29.720916 107.559506 29.720916 78.83859 54.279753 1.734637863 0.090161 121 64 SH7694 7694 snoRNA cluster1 intergenic 34.440011 132.324898 34.440011 98.884887 66.662449 1.823881264 -0.102052 121 65 SH2423 2423 Phe4 3' flank 29.651223 85.979097 57.81516 1.762041732 -0.017079 121 66 SH18018 18018 YLR306W_12_744151_744851_INTRON_4_137 5' exon 29.189509 113.231804 29.189509 85.042295 57.115902 1.75675704 -0.021136 121 67 SH21387 21387 Phe1_5 spliced 38.825638 87.785232 63.305435 1.801440997 0.242174 121 68 SH20199 20199 YDR025W spliced 32.8566 86.934032 59.895316 1.777392861 0.103222 121 69 SH11404 11404 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3906 3919 2388.26848 1959.446029 2173.857255 3.337231023 0.019891 121 70 SH12413 12413 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.026522 116.96655 34.026522 83.940028 58.983275 1.770728883 0.204267 121 71 SH19284 19284 YPL143W_16_282121_282969_INTRON_20_544 intron/exon 29.798751 104.144097 29.798751 75.345346 52.5720485 1.7207549 0.140465 121 72 SH9771 9771 RUF4 RUF4 631 648 37.421287 101.309188 69.3652375 1.841141878 -0.08263 121 73 SH373 373 Asn1 5' flank 28.069781 78.03572 53.0527505 1.724707905 -0.007285 121 74 SH15527 15527 YBR048W_2_332790_333771_INTRON_46_556 intron 27.77375 97.893368 27.77375 71.119618 49.446684 1.694137172 0.063591 121 75 SH14659 14659 MT 21S rRNA 21S rRNA4 31.625227 120.792096 31.625227 90.166869 60.896048 1.784589109 -0.004386 121 76 SH1881 1881 Leu9 3' flank 134.896241 190.890679 162.89346 2.211903648 0.068892 121 77 SH17062 17062 YGR214W_7_920570_921783_INTRON_91_545 intron 39.815592 135.640239 39.815592 96.824647 68.3201195 1.834548617 0.061783 121 78 SH13531 13531 MT COX1 intronic 28.474759 95.633149 28.474759 68.15839 48.3165745 1.684096137 0.152405 121 79 SH4127 4127 SRP RNA SRP RNA 526 540 33.063308 78.889744 55.976526 1.748005942 0.261824 121 80 SH10700 10700 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 386 403 28.327577 82.86718 55.5973785 1.745054314 -0.050205 121 81 SH6105 6105 snR37 3' 25.885986 74.478162 50.182074 1.700548607 -0.116244 121 82 SH15980 15980 YDL136W_4_217600_218367_INTRON_4_408 intron 27.899293 111.770788 27.899293 84.871495 56.385394 1.751166619 -0.102837 121 83 SH2466 2466 Phe5 3' flank 23.532481 69.367278 46.4498795 1.666984592 -0.227971 121 84 SH4152 4152 SRP RNA SRP RNA 651 667 37.379531 91.963748 64.6716395 1.810713871 0.115303 121 85 SH19046 19046 YOR234C_15_779404_778554_INTRON_20_546 intron 811.228323 1749.958932 811.228323 939.730609 875.479466 2.942245964 -0.245833 121 86 SH20074 20074 YCR028C-A spliced 27.005503 70.720231 48.862867 1.688978945 0.014975 121 87 SH13265 13265 MT COX1 COX1-ai4 27.247275 94.904873 27.247275 68.657598 47.9524365 1.680810679 0.060543 121 88 SH7656 7656 snoRNA cluster1 5' 30.598678 113.883392 30.598678 84.284714 57.441696 1.759227254 0.055809 121 89 SH391 391 Asn1 36-52 36 52 31.186722 90.166603 60.6766625 1.783021685 -0.023069 121 90 SH629 629 Gln2 5' flank 30.540665 70.753742 50.6472035 1.704555471 0.249754 121 91 SH3444 3444 Trp1 tRNA 51 68 32.358558 97.013565 64.6860615 1.810810709 -0.116539 121 92 SH16050 16050 YDL191W_4_117665_118518_INTRON_4_494 intron 25.644102 92.857049 25.644102 68.212947 46.9285245 1.6714369 -0.050003 121 93 SH5708 5708 snR34 snR34 461 481 27.827158 92.814885 60.3210215 1.780468687 -0.220404 121 94 SH10455 10455 RUF8 RUF8 201 217 30.124476 85.951072 58.037774 1.763710747 0.004619 121 95 SH14766 14766 MT ORF11; tRNA Leu; tRNA Gln ORF11 25.388736 91.688815 25.388736 67.300079 46.3444075 1.665997334 -0.055312 121 96 SH4189 4189 telomerase RNA 5' 26.596803 76.780099 51.688451 1.713393517 -0.093284 121 97 SH177 177 Arg2 1-13 1 13 42.42247 89.06715 65.74481 1.817861475 0.286214 121 98 SH15756 15756 YCR031C_3_178212_177492_INTRON_8_314 intron 24.841906 91.951186 24.841906 68.10928 46.475593 1.66722494 -0.108157 121 99 SH10343 10343 RUF7 RUF7 326 345 27.016041 77.05432 52.0351805 1.716297065 -0.066708 121 100 SH2187 2187 Met2 66-72 + 3' flank 66 26.021519 70.633138 48.3273285 1.684192788 -0.055323 121 101 SH16849 16849 YGL183C_7_157071_156547_INTRON_4_86 5' exon 26.394176 101.706452 26.394176 76.312276 51.353226 1.710567731 -0.102147 121 102 SH2741 2741 Pro5 tRNA 86 100 35.110623 87.371596 61.2411095 1.78704305 0.165799 121 103 SH9237 9237 snR6 / U6 RNA U6 56 70 32.519599 92.628849 62.574224 1.796395473 -0.018377 121 104 SH8198 8198 snoRNA cluster 3; intergenic 27.96397 115.601 27.96397 88.63703 58.3005 1.765672279 -0.14259 122 2 SH16333 16333 YDR471W_4_1401759_1402553_INTRON_32_415 intron/exon 50.476679 218.647201 50.476679 169.170522 109.8236005 2.040695678 -0.821714 122 3 SH17430 17430 YIL133C_9_99416_98527_INTRON_32_321 intron 28.839849 110.578322 28.839849 82.738473 55.789161 1.74654983 -0.01488 122 4 SH2448 2448 Phe5 tRNA 11 25 107.019532 190.336674 148.678103 2.172247011 -0.201323 122 5 SH19047 19047 YOR234C_15_779404_778554_INTRON_20_546 intron 30.128237 114.284754 30.128237 85.156517 57.642377 1.760741882 0.019153 122 6 SH8409 8409 snoRNA cluster 5 snR190 25.942479 99.880049 25.942479 74.93757 50.4400245 1.702775289 -0.117946 122 7 SH17167 17167 YHR016C_8_138446_136872_INTRON_48_215 intron 28.407217 98.263673 28.407217 70.856456 49.6318365 1.695760345 0.110579 122 8 SH11525 11525 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4511 4531 35.464521 79.664316 57.5644185 1.760154122 0.340544 122 9 SH3482 3482 Tyr1 5' flank 29.851298 81.888434 55.869866 1.74717763 0.060408 122 10 SH3162 3162 Ser5 5' flank 30.904807 72.507318 51.7060625 1.713541467 0.247575 122 11 SH12709 12709 MT ORF 8 (hypothetical) ORF8 26.109073 89.889123 26.109073 64.78005 45.4445615 1.657481917 0.035765 122 12 SH9357 9357 RUF1 RUF1 361 382 25.628054 77.443333 51.5356935 1.712108125 -0.172991 122 13 SH3869 3869 RNaseP RNaseP 311 325 34.036508 92.4538 63.245154 1.801027254 0.024431 122 14 SH12564 12564 MT_15S MT_15S 27.795122 111.234205 27.795122 84.439083 56.1171025 1.749095239 -0.104772 122 15 SH5114 5114 snR11 snR11 171 193 28.35799 71.869183 50.1135865 1.699955485 0.093621 122 16 SH10097 10097 RUF6 RUF6 331 347 28.71905 80.655726 54.687388 1.737887181 0.002737 122 17 SH15619 15619 YBR181C_2_592732_591670_INTRON_7_358 intron 28.6666 115.614762 28.6666 87.948162 58.307381 1.765723535 -0.097307 122 18 SH12255 12255 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.220076 107.062229 28.220076 79.842153 54.0311145 1.732643926 -0.020136 122 19 SH2548 2548 Pro2 5' flank 29.637588 75.003698 52.320643 1.718673073 0.134797 122 20 SH10706 10706 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 416 433 28.863898 89.322147 59.0930225 1.771536204 -0.112108 122 21 SH3236 3236 Thr1 tRNA 36 52 50.271402 112.212779 81.2420905 1.90978109 -0.036111 122 22 SH1590 1590 Leu4 3' flank 26.984589 78.590602 52.7875955 1.72253188 -0.088668 122 23 SH19158 19158 YPL075W_16_412249_415357_INTRON_9_759 intron 31.570929 113.782359 31.570929 83.21143 57.3911795 1.75884515 0.117501 122 24 SH1628 1628 Leu5 tRNA 6 18 33508.77048 33357.10455 33432.93751 4.524174537 -1.019031 122 25 SH10485 10485 RUF8 RUF8 351 370 38.704942 85.619072 62.162007 1.793525028 0.29025 122 26 SH990 990 Gly2 5' flank 27.543505 78.596254 53.0698795 1.724848102 -0.050113 122 27 SH12530 12530 MT_ORF6 + ORF7 (hypothetical) ORF6/7 27.344303 100.268121 27.344303 73.923818 50.6340605 1.704442756 -0.003528 122 28 SH6998 6998 snR60 snR60 71 88 30.266342 81.041295 55.6538185 1.745494967 0.096836 122 29 SH7904 7904 snoRNA cluster1 intergenic 28.355127 99.46442 28.355127 72.109293 50.23221 1.700982286 0.090226 122 30 SH14511 14511 MT 21S rRNA 21S rRNA3 26.102465 114.522452 26.102465 89.419987 57.761226 1.761636403 -0.280539 122 31 SH4080 4080 SRP RNA SRP RNA 291 303 74.316506 136.641012 105.478759 2.023165012 -0.025256 122 32 SH4639 4639 snR3 snR3 111 127 32.783251 86.564251 59.673751 1.775783338 0.106825 122 33 SH15381 15381 YBL027W_2_168385_169338_INTRON_3_386 intron 32.809322 129.06239 32.809322 97.253068 65.031195 1.813121735 -0.109722 122 34 SH8486 8486 snR19 / U1 RNA 5' 27.741573 86.254641 56.998107 1.755860432 -0.129704 122 35 SH11866 11866 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6216 6233 182.05073 232.43257 207.24165 2.316477041 0.099503 122 36 SH1967 1967 Lys2 tRNA 36 53 7602.656416 11969.14166 9785.89904 3.990600731 -1.336286 122 37 SH18035 18035 YLR316C_12_766358_765266_INTRON_230_285 3' exon 30.514091 116.28666 30.514091 86.772569 58.64333 1.768218623 0.007103 122 38 SH6809 6809 snR52 5' 37.598722 83.084547 60.3416345 1.78061707 0.326485 122 39 SH11513 11513 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4451 4464 204.18549 273.479654 238.832572 2.378093556 -0.028887 122 40 SH16718 16718 YGL031C_7_438393_437938_INTRON_1_456 intron/exon 31.384528 120.896087 31.384528 90.511559 60.9480435 1.784959769 -0.020514 122 41 SH5431 5431 snR31 221-225+3' 221 27.429931 70.353658 48.8917945 1.689235978 0.049993 122 42 SH16498 16498 YER117W_5_396765_397649_INTRON_43_513 intron 28.902602 115.524151 28.902602 87.621549 58.2620755 1.765385952 -0.080577 122 43 SH21889 21889 copy of SH18799 27.537011 71.83951 49.6882605 1.696253793 0.037441 122 44 SH15516 15516 YBR048W_2_332790_333771_INTRON_46_556 intron 28.136587 108.539892 28.136587 81.403305 54.769946 1.738542313 -0.045107 122 45 SH5423 5423 snR31 snR31 181 198 30.986081 92.926809 61.956445 1.79208649 -0.078354 122 46 SH19869 19869 Negative Control 30.880953 86.47381 58.6773815 1.768470725 0.028434 122 47 SH11304 11304 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3406 3423 164.817207 231.727193 198.2722 2.297261825 -0.01657 122 48 SH8785 8785 LSR1 / U2 RNA U2 566 585 29.80766 78.897709 54.3526845 1.735220999 0.094902 122 49 SH11904 11904 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6406 6424 82.22764 130.829255 106.5284475 2.027465598 0.161944 122 50 SH3848 3848 RNaseP RNaseP 206 222 30.647457 88.746605 59.697031 1.775952732 -0.021859 122 51 SH2120 2120 Met1 5' flank - tRNA3 3 30.746967 95.356662 63.0518145 1.799697589 -0.128653 122 52 SH9703 9703 RUF4 RUF4 291 308 28.224051 80.923163 54.573607 1.736982659 -0.033336 122 53 SH10771 10771 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 741 758 54.250958 113.20366 83.727309 1.922867133 0.016048 122 54 SH19589 19589 AEP2/ATP13 2.1 27.787983 78.528128 53.1580555 1.725569086 -0.032594 122 55 SH8516 8516 snR19 / U1 RNA U1 76 98 27.620055 72.00651 49.8132825 1.697345161 0.041012 122 56 SH3899 3899 RNase MRP 5' 27.480505 78.316659 52.898582 1.72344403 -0.050859 122 57 SH5787 5787 snR35 snR35 121 140 27.439895 78.158569 52.799232 1.722627605 -0.051623 122 58 SH12301 12301 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.277918 121.279465 32.277918 90.001547 61.1397325 1.786323534 0.025794 122 59 SH4220 4220 telomerase RNA telomerase 136 152 30.120599 85.136812 57.6287055 1.760638864 0.019172 122 60 SH2097 2097 Lys4 3' flank 30.268821 65.699453 47.984137 1.681097688 0.305331 122 61 SH21426 21426 Trp1 spliced 168.440881 214.94942 191.6951505 2.282611126 0.135425 122 62 SH4439 4439 telomerase RNA telomerase 1231 1250 27.674368 81.335364 54.504866 1.736435276 -0.07548 122 63 SH2457 2457 Phe5 tRNA 56 70 192.024443 300.290062 246.1572525 2.391212636 -0.259045 122 64 SH2659 2659 Pro4 5' flank 27.511993 74.583088 51.0475405 1.707974822 -0.000274 122 65 SH688 688 Gln3 5' flank 27.540172 85.561575 56.5508735 1.752439318 -0.135356 122 66 SH18886 18886 YOL047C_15_242745_241612_INTRON_244_306 intron 29.450502 102.31477 29.450502 73.864268 51.657385 1.713132418 0.138192 122 67 SH19794 19794 Negative Control 28.677129 88.360179 58.518654 1.767294328 -0.104045 122 68 SH8841 8841 LSR1 / U2 RNA U2 846 861 1702.526194 1732.437883 1717.482039 3.234892204 -0.229336 122 69 SH5343 5343 snR30 snR30 566 582 28.622263 90.084488 59.3533755 1.773445423 -0.136506 122 70 SH1214 1214 Ile1 tRNA 31 45 31.687628 89.871439 60.7795335 1.783757362 0.003329 122 71 SH4485 4485 U3b (snR17b) 5' - 3 3 27.570506 85.037263 56.3038845 1.750538359 -0.127128 122 72 SH8772 8772 LSR1 / U2 RNA U2 501 518 30.293562 80.5735 55.433531 1.743772543 0.104326 122 73 SH627 627 Gln2 5' flank 27.989333 73.657868 50.8236005 1.706065429 0.044831 122 74 SH15137 15137 MT tRNA Phe 3' 27.568341 125.010572 27.568341 98.442231 63.005286 1.799376987 -0.32397 122 75 SH10599 10599 RUF8 RUF8 921 935 38.293948 97.209289 67.7516185 1.830919674 0.021545 122 76 SH1990 1990 Lys2 3' flank 154.955598 181.472354 168.213976 2.225862076 0.319796 122 77 SH18009 18009 YLR287C-A_12_713158_712537_INTRON_4_433 intron 30.42509 120.7468 30.42509 91.32171 60.8734 1.784427559 -0.075854 122 78 SH15047 15047 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.368589 93.526228 26.368589 68.157639 47.263114 1.674522332 0.004428 122 79 SH13018 13018 MT COX1 COX1ai2 31.066928 115.412429 31.066928 85.345501 58.2062145 1.764969355 0.056788 122 80 SH20796 20796 YKL157W spliced 28.709132 95.370242 62.039687 1.792669598 -0.220657 122 81 SH15771 15771 YCR097W_3_293828_294314_INTRON_106_159 intron/exon 28.718299 108.788603 28.718299 81.070304 54.8943015 1.739527263 -0.002445 122 82 SH6632 6632 snR48 5' - 2 -14 2 28.893946 82.823409 55.8586775 1.747090649 -0.012376 122 83 SH11942 11942 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6596 6614 36.073883 90.166598 63.1202405 1.800168645 0.12499 122 84 SH19087 19087 YOR293W_15_867094_867848_INTRON_53_489 3' exon 111.369243 293.386271 111.369243 183.017028 147.1931355 2.167887557 -0.08743 122 85 SH16651 16651 YFR031C-A_6_221405_220494_INTRON_5_151 intron 29.692738 117.623101 29.692738 88.930363 59.3115505 1.773139277 -0.067416 122 86 SH17490 17490 YJL024C_10_396288_395627_INTRON_23_99 3' exon 34.804254 131.431185 34.804254 97.626931 66.2155925 1.820960269 -0.067061 122 87 SH13372 13372 MT COX1 intronic 27.756266 98.111256 27.756266 71.35499 49.555628 1.695092984 0.059208 122 88 SH19423 19423 YPR132W_16_794960_795762_INTRON_66_430 intron 67.34788 178.880001 67.34788 112.532121 89.9400005 1.953952886 0.235646 122 89 SH8713 8713 LSR1 / U2 RNA U2 206 222 27.107342 77.827605 52.4674735 1.719890152 -0.070348 122 90 SH4016 4016 SRP RNA 5' 28.892066 76.111439 52.5017525 1.7201738 0.072116 122 91 SH21064 21064 YMR201C spliced 35.364038 90.517442 62.94074 1.798931845 0.100117 122 92 SH15543 15543 YBR078W_2_393082_394818_INTRON_59_388 intron 29.597355 110.27234 29.597355 81.674985 55.63617 1.745357225 0.046924 122 93 SH10500 10500 RUF8 RUF8 426 445 30.635251 141.603084 86.1191675 1.935099823 -0.936784 122 94 SH11756 11756 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5666 5681 215.264676 242.70716 228.985918 2.359808775 0.233483 122 95 SH5726 5726 snR34 3' 29.67615 123.782016 76.729083 1.884960008 -0.686663 122 96 SH9807 9807 RUF4 3' 35.026539 101.583614 68.3050765 1.834452982 -0.142622 122 97 SH4622 4622 snR3 snR3 26 42 215.108068 362.101935 288.6050015 2.460303853 -0.423428 122 98 SH10655 10655 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 161 178 46.4691 106.269171 76.3691355 1.882917874 0.00254 122 99 SH21419 21419 Ser4 spliced 41.493775 103.449865 72.47182 1.860169168 -0.039983 122 100 SH3947 3947 RNase MRP RNaseMRP 151 167 32.108128 95.112069 63.6100985 1.803526068 -0.082983 122 101 SH5346 5346 snR30 snR30 581 598 30.521181 85.152289 57.836735 1.762203768 0.036573 122 102 SH7338 7338 snR68 5' 30.335268 89.535918 59.935593 1.777684807 -0.04926 122 103 SH14493 14493 MT 21S rRNA 21S rRNA3 27.821583 100.185901 27.821583 73.364318 50.5929505 1.704090008 0.037086 122 104 SH9496 9496 RUF2 3' 30.048308 85.412927 57.7306175 1.761406203 0.010947 123 2 SH21645 21645 copy of SH8560 25.347691 72.122007 48.734849 1.687839625 -0.125865 123 3 SH8590 8590 snR19 / U1 RNA U1 446 464 26.517838 71.26782 48.892829 1.689245167 -0.027521 123 4 SH8041 8041 snoRNA cluster 2 intergenic 27.391523 105.129802 27.391523 78.738279 53.064901 1.724807358 -0.062346 123 5 SH6794 6794 snR50 3' 27.893954 72.095523 49.9947385 1.698924301 0.05883 123 6 SH2801 2801 Pro6 96-102 + 3' flank 96 30.554396 82.042998 56.298697 1.750498343 0.095573 123 7 SH6205 6205 snR40 86-97 + 3' 86 28.723743 81.44588 55.0848115 1.741031868 -0.006716 123 8 SH14698 14698 MT tRNA thr2 5' 28.992199 99.551103 28.992199 71.558904 50.2755515 1.701356843 0.140368 123 9 SH14644 14644 MT 21S rRNA intronic 26.837664 101.823679 26.837664 75.986015 51.4118395 1.711063143 -0.065946 123 10 SH2149 2149 Met1 3' flank 29.137185 107.631897 68.384541 1.834957936 -0.417086 123 11 SH10742 10742 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 596 614 33.557932 110.369423 71.9636775 1.857113349 -0.34896 123 12 SH8114 8114 snoRNA cluster 3; 5' 28.630303 100.728113 28.630303 73.09781 50.8640565 1.706410993 0.095417 123 13 SH18388 18388 YMR116C_13_500687_499455_INTRON_538_810 intron 28.235438 102.724848 28.235438 75.48941 51.862424 1.714852811 0.037016 123 14 SH11929 11929 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6531 6544 32.601093 172.756465 102.678779 2.011480696 -1.282549 123 15 SH6677 6677 snR49 5' 30.697933 158.495671 94.596802 1.975876455 -1.16362 123 16 SH11155 11155 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2661 2676 31.052513 91.164159 61.108336 1.786100458 -0.045863 123 17 SH18774 18774 YNL265C_14_145280_144279_INTRON_28_132 5' exon 31.121209 114.073211 31.121209 83.952002 57.5366055 1.759944236 0.084591 123 18 SH5029 5029 snR10 snR10 176 193 30.736167 80.466932 55.6015495 1.745086895 0.13298 123 19 SH9668 9668 RUF4 RUF4 116 133 29.830256 78.773181 54.3017185 1.734813574 0.097911 123 20 SH6728 6728 snR49 3' 31.033709 97.822868 64.4282885 1.809076595 -0.169141 123 21 SH17287 17287 YHR141C_8_382752_381991_INTRON_5_445 intron 28.791447 109.101311 28.791447 81.309864 55.0506555 1.740762495 -0.000606 123 22 SH15561 15561 YBR082C_2_407127_406586_INTRON_48_142 3' exon 31.595722 116.037809 31.595722 85.442087 58.5189045 1.767296187 0.077628 123 23 SH3894 3894 RNaseP 3' 27.658301 82.996983 55.327642 1.742942161 -0.096822 123 24 SH16664 16664 YFR032C-A_6_223758_223245_INTRON_1_331 intron 51.411536 161.544001 51.411536 111.132465 81.2720005 1.90994095 0.003192 123 25 SH18202 18202 YML024W_13_225889_226697_INTRON_4_401 intron 36.376628 127.742067 36.376628 92.365439 64.3710335 1.808690482 0.083206 123 26 SH10481 10481 RUF8 RUF8 331 347 70.091151 133.275809 101.68348 2.007250401 -0.040274 123 27 SH3982 3982 RNase MRP RNaseMRP 326 340 31.382226 81.757548 56.569887 1.752585311 0.136745 123 28 SH21590 21590 copy of SH6251 34.291442 83.97116 59.131301 1.771817434 0.214073 123 29 SH7288 7288 snR66 5' 31.232702 88.094089 59.6633955 1.775707966 0.014875 123 30 SH19890 19890 Positive Control 6 81.997346 123.354356 102.675851 2.011468311 0.265685 123 31 SH15193 15193 MT COX3 cox3 30.04063 114.287029 30.04063 85.246399 57.6435145 1.760750452 0.013624 123 32 SH12170 12170 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7736 7759 32.490327 74.270993 53.38066 1.727383939 0.31778 123 33 SH8678 8678 LSR1 / U2 RNA U2 31 49 28.105137 86.90865 57.5068935 1.759719908 -0.112735 123 34 SH4254 4254 telomerase RNA telomerase 306 323 28.096603 78.002687 53.049645 1.724682482 -0.005062 123 35 SH152 152 Arg1 3' flank 29.42867 79.315342 54.372006 1.735375356 0.065506 123 36 SH19857 19857 Negative Control 32.247013 84.953417 58.600215 1.767899209 0.113809 123 37 SH11121 11121 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2491 2507 31.063429 82.059287 56.561358 1.752519828 0.11738 123 38 SH19585 19585 AEP2/ATP13 2.1 73.657915 121.343415 97.500665 1.989007578 0.184475 123 39 SH15597 15597 YBR089C-A_2_426588_426148_INTRON_1_114 intron 32.157989 112.364377 32.157989 81.206388 56.6821885 1.75344661 0.179892 123 40 SH19795 19795 Negative Control 28.634428 80.489461 54.5619445 1.736889839 -0.000757 123 41 SH16367 16367 YEL012W_5_131772_132551_INTRON_6_128 3' exon 81.77717 219.156859 81.77717 138.379689 110.0784295 2.041702225 0.054257 123 42 SH9098 9098 snR14 / U4 RNA U4 106 120 29.576034 76.671939 53.1239865 1.725290658 0.108855 123 43 SH21030 21030 YMR116C spliced 29.42917 83.61815 56.52366 1.752230275 0.012645 123 44 SH8982 8982 snR17a / U3a U3a 196 212 31.223118 78.266076 54.744597 1.738341263 0.190363 123 45 SH6131 6131 snR39B 5' - 17 -4 17 30.82224 72.363822 51.593031 1.712591043 0.244518 123 46 SH17502 17502 YJL136C_10_156971_156248_INTRON_25_484 5' exon 33.316457 127.384 33.316457 95.067543 64.192 1.807480907 -0.050456 123 47 SH7873 7873 snoRNA cluster1 snR73 26.900345 95.040298 26.900345 69.139953 48.020149 1.681423503 0.029147 123 48 SH9021 9021 snR17a / U3a U3a 391 409 27.298817 79.438977 53.368897 1.727288227 -0.077604 123 49 SH1399 1399 Leu1 tRNA-intron/exon 66 82 237.163248 333.86306 285.513154 2.455626122 -0.168545 123 50 SH13249 13249 MT COX1 COX1-ai4 28.100998 104.931521 28.100998 77.830523 52.9657605 1.723995212 -0.002555 123 51 SH17231 17231 YHR077C_8_255757_252375_INTRON_7_119 intron 28.401354 99.516373 28.401354 72.115019 50.2581865 1.701206814 0.093287 123 52 SH5247 5247 snR30 snR30 86 103 30.675494 83.265054 56.970274 1.755648308 0.077994 123 53 SH11354 11354 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3656 3669 66.682791 104.77318 85.7279855 1.933122618 0.361695 123 54 SH7722 7722 snoRNA cluster1 snR77/intergenic 39.101912 123.939292 39.101912 85.83738 62.469646 1.795669045 0.2938 123 55 SH3562 3562 Tyr2 81-89 + 3' flank 81 27.018987 74.120656 50.5698215 1.703891421 -0.029128 123 56 SH20294 20294 YDR500C spliced 31.416826 82.164343 56.7905845 1.754276339 0.130542 123 57 SH9315 9315 RUF1 RUF1 151 167 30.237076 72.844591 51.5408335 1.712151438 0.201773 123 58 SH15244 15244 MT tRNA fMet 5' / tRNA 27.138933 111.99758 27.138933 85.858647 56.49879 1.752039147 -0.166479 123 59 SH16077 16077 YDR025W_4_491510_492319_INTRON_46_384 intron 27.667648 108.658866 27.667648 81.991218 54.829433 1.739013755 -0.083979 123 60 SH10901 10901 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1391 1410 12304.29585 7751.911985 10028.10392 4.001218826 -0.021559 123 61 SH12387 12387 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.725334 112.557275 31.725334 81.831941 56.7786375 1.754184967 0.149892 123 62 SH18743 18743 YNL162W_14_331319_332151_INTRON_5_516 intron 30.270712 123.260848 30.270712 93.990136 62.130424 1.793304317 -0.127217 123 63 SH628 628 Gln2 5' flank 27.666065 69.930486 48.7982755 1.688404475 0.07229 123 64 SH20756 20756 YJR094W-A spliced 39.659867 108.693177 74.176522 1.870266466 -0.17901 123 65 SH20816 20816 YKL190W spliced 27.84229 73.117563 50.4799265 1.703118714 0.041752 123 66 SH18039 18039 YLR333C_12_796335_795573_INTRON_1_423 intron 29.797454 119.9375 29.797454 91.140046 60.46875 1.781530991 -0.100672 123 67 SH17120 17120 YHR010W_8_126513_127484_INTRON_32_592 intron 28.882899 99.715057 28.882899 71.832158 50.3575285 1.702064407 0.129436 123 68 SH17705 17705 YKL081W_11_282533_284097_INTRON_206_531 intron 30.532775 103.750101 30.532775 74.217326 52.3750505 1.719124455 0.201417 123 69 SH17082 17082 YHL001W_8_104270_105084_INTRON_130_527 5' exon 28.539216 105.690533 28.539216 78.151317 53.3452665 1.727095889 0.022483 123 70 SH7012 7012 snR60 3' 443.3294 526.805412 485.067406 2.685802093 -0.108912 123 71 SH13617 13617 MT ATP6 5' 27.462155 98.685364 27.462155 72.223209 49.842682 1.697601403 0.027087 123 72 SH10047 10047 RUF6 RUF6 81 100 27.675492 82.397762 55.036627 1.74065181 -0.088397 123 73 SH19032 19032 YOR234C_15_779404_778554_INTRON_20_546 5' exon 29.978215 110.279604 29.978215 81.301389 55.639802 1.745385576 0.075605 123 74 SH1293 1293 Ile2 3' flank 27.250656 74.789692 51.020174 1.707741935 -0.021309 123 75 SH16705 16705 YGL031C_7_438393_437938_INTRON_1_456 intron 27.655643 103.634506 27.655643 76.978863 52.317253 1.718644933 -0.021639 123 76 SH3846 3846 RNaseP RNaseP 196 213 30.359954 82.924317 56.6421355 1.753139619 0.070499 123 77 SH14011 14011 MT COB intronic 25.964685 90.141234 25.964685 65.176549 45.570617 1.658684909 0.019198 123 78 SH12883 12883 MT COX1 COX1ai1 27.567019 116.665535 27.567019 90.098516 58.8327675 1.769619278 -0.187025 123 79 SH6 6 Ala1 5' flank 26.67394 67.914248 47.294094 1.67480691 0.030033 123 80 SH3973 3973 RNase MRP RNaseMRP 281 293 35.676231 85.506676 60.5914535 1.782411371 0.223272 123 81 SH16600 16600 YFL034C-A_6_64931_64242_INTRON_13_333 intron/exon 33.54303 120.884447 33.54303 88.341417 60.9422235 1.784918296 0.104344 123 82 SH6726 6726 snR49 156-165 + 3' 156 27.213916 76.594031 51.9039735 1.715200606 -0.046959 123 83 SH16040 16040 YDL191W_4_117665_118518_INTRON_4_494 intron 27.706362 108.906618 27.706362 82.200256 54.953309 1.739993848 -0.083894 123 84 SH5475 5475 snR32 snR32 36 56 27.923845 76.954055 52.43895 1.719653987 -0.003132 123 85 SH9041 9041 snR17a / U3a 3' 27.975833 68.825992 48.4009125 1.684853549 0.109009 123 86 SH14524 14524 MT 21S rRNA 21S rRNA3 28.008048 104.352747 28.008048 77.344699 52.6763735 1.721615868 -0.002528 123 87 SH12357 12357 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.523349 117.099598 31.523349 86.576249 59.049799 1.771218424 0.054159 123 88 SH13089 13089 MT COX1 COX1ai3 27.676107 104.332272 27.676107 77.656165 52.666136 1.721531456 -0.029016 123 89 SH3565 3565 Tyr2 3' flank 32.005907 88.512873 60.25939 1.780024731 0.040269 123 90 SH21659 21659 copy of SH9189 29.407908 67.479419 48.4436635 1.685236979 0.224111 123 91 SH8700 8700 LSR1 / U2 RNA U2 141 158 29.261625 85.377915 57.31977 1.758304439 -0.023927 123 92 SH15041 15041 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.132963 138.22565 29.132963 110.092687 69.612825 1.842689258 -0.463114 123 93 SH15165 15165 MT tRNA Val tRNA 28.87757 144.682227 28.87757 116.804657 72.8411135 1.862376576 -0.590815 123 94 SH21696 21696 copy of SH10661 73.389974 150.62891 112.009442 2.049254634 -0.215529 123 95 SH6557 6557 snR46 3' 34.329831 117.37132 75.8505755 1.87995888 -0.457121 123 96 SH8557 8557 snR19 / U1 RNA U1 281 298 26.803083 86.213105 56.508094 1.752110659 -0.194067 123 97 SH11085 11085 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2311 2329 199.930921 205.402384 202.6666525 2.306782294 0.419583 123 98 SH2035 2035 Lys3 3' flank 26.152928 60.223855 43.1883915 1.63536703 0.113014 123 99 SH6934 6934 snR58 snR58 31 47 28.974402 81.458527 55.2164645 1.742068595 0.0095 123 100 SH12608 12608 MT_15S MT_15S 27.7686 107.406845 27.7686 80.638245 54.2034225 1.73402671 -0.060457 123 101 SH5833 5833 snR35 snR35 351 368 28.252081 70.148044 49.2000625 1.691965654 0.109675 123 102 SH5578 5578 snR33 176-183 + 3' 176 28.070734 80.327678 54.199206 1.733992924 -0.036204 123 103 SH17623 17623 YJR094W-A_10_608000_608553_INTRON_3_277 intron 36.68402 136.912807 36.68402 101.228787 68.9564035 1.838574602 -0.097364 123 104 SH5874 5874 snR35 3' 29.801423 73.341821 51.571622 1.712410791 0.167617 124 2 SH10354 10354 RUF7 RUF7 381 395 38.79682 110.147107 74.4719635 1.871992804 -0.224819 124 3 SH11015 11015 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1961 1974 35.28306 98.668385 66.9757225 1.825917407 -0.07693 124 4 SH18410 18410 YMR125W_13_517538_520445_INTRON_26_347 intron 27.309244 102.554826 27.309244 76.245582 51.777413 1.714140348 -0.035805 124 5 SH19625 19625 RNA14 2.2 38.769427 95.994258 67.3818425 1.828542882 0.057642 124 6 SH9656 9656 RUF4 RUF4 56 68 82.532204 124.71567 103.623937 2.015460088 0.252735 124 7 SH15830 15830 YDL075W_4_322225_322987_INTRON_58_478 exon/intron 28.525189 117.071464 28.525189 89.546275 59.035732 1.771114953 -0.131783 124 8 SH17263 17263 YHR101C_8_315970_314876_INTRON_111_197 3' exon 28.950928 104.513051 28.950928 76.562123 52.7565255 1.722276186 0.07004 124 9 SH16193 16193 YDR381C-A_4_1238839_1238301_INTRON_27_220 exon/intron 31.446396 115.417535 31.446396 84.971139 58.2087675 1.764988404 0.079838 124 10 SH556 556 Cys1 3' flank 29.203263 61.755124 45.4791935 1.657812755 0.295725 124 11 SH8541 8541 snR19 / U1 RNA U1 201 219 26.886075 68.177752 47.5319135 1.676985298 0.041573 124 12 SH4418 4418 telomerase RNA telomerase 1126 1142 28.929589 88.509248 58.7194185 1.768781746 -0.094922 124 13 SH19397 19397 YPR063C_16_678315_677807_INTRON_42_127 5' exon 30.763831 114.90869 30.763831 85.144859 57.954345 1.763086002 0.047307 124 14 SH3396 3396 Thr4 66-72 + 3' flank 66 32.715305 74.825947 53.770626 1.730545093 0.323328 124 15 SH21123 21123 YNL112W spliced 28.401355 85.085987 56.743671 1.753917429 -0.071759 124 16 SH20998 20998 YML085C spliced 27.664494 74.630973 51.1477335 1.708826394 0.009756 124 17 SH17221 17221 YHR041C_8_189855_189122_INTRON_15_115 intron 31.342711 110.652388 31.342711 80.309677 55.826194 1.74683802 0.1627 124 18 SH19040 19040 YOR234C_15_779404_778554_INTRON_20_546 intron 26.584468 104.660301 26.584468 79.075833 52.8301505 1.722881848 -0.122978 124 19 SH8755 8755 LSR1 / U2 RNA U2 416 433 27.977255 81.209694 54.5934745 1.737140735 -0.053422 124 20 SH7035 7035 snR62 5' 37.875914 89.963361 63.9196375 1.805634303 0.171237 124 21 SH2865 2865 Pro7 3' flank 29.202628 86.608815 57.9057215 1.762721477 -0.048771 124 22 SH13512 13512 MT COX1 intronic 25.695261 95.530532 25.695261 70.835271 48.265266 1.683634704 -0.082363 124 23 SH52 52 Ala1 3' flank 28.401272 80.661133 54.5312025 1.736645075 -0.018295 124 24 SH6263 6263 snR42 snR42 96 112 30.384406 91.868004 61.126205 1.786227434 -0.086871 124 25 SH15859 15859 YDL079C_4_314747_312950_INTRON_413_704 intron 27.960728 102.914396 27.960728 75.953668 51.957198 1.715645722 0.012456 124 26 SH1123 1123 Gly4 3' flank 28.405424 72.806753 50.6060885 1.704202771 0.084402 124 27 SH16659 16659 YFR032C-A_6_223758_223245_INTRON_1_331 intron 28.969806 114.475358 28.969806 86.505552 57.737679 1.761459322 -0.057639 124 28 SH6177 6177 snR40 5' 31.710014 91.661351 61.6856825 1.790184374 -0.026233 124 29 SH16452 16452 YER074W-A_0_5_307649_INTRON_95_196 exon/intron 29.768958 110.795731 29.768958 82.026773 55.8978655 1.747395224 0.053513 124 30 SH20509 20509 YGR027C spliced 29.945054 82.165358 56.055206 1.748615953 0.062936 124 31 SH16863 16863 YGL187C_7_150529_149708_INTRON_1_342 intron 34.68255 125.581637 34.68255 91.899087 63.2908185 1.801340712 0.052723 124 32 SH2572 2572 Pro2 96-103 + 3' flank 96 32.543659 89.589156 61.0664075 1.785802371 0.043873 124 33 SH7096 7096 snR63 5' - 7 -14 7 28.268988 73.512975 50.8909815 1.706640827 0.065817 124 34 SH17524 17524 YJL136C_10_156971_156248_INTRON_25_484 intron 28.362211 105.258062 28.362211 77.895851 53.129031 1.725331895 0.014039 124 35 SH7549 7549 snR79 3' 27.610713 76.115219 51.862966 1.71485735 -0.013406 124 36 SH12313 12313 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.219751 126.312473 33.219751 94.092722 63.6562365 1.803840959 -0.032011 124 37 SH2340 2340 Phe3 tRNA-exon/intron 26 42 32.199566 87.339601 59.7695835 1.776480229 0.068986 124 38 SH929 929 Glu3 3' flank 32.196176 89.132121 60.6641485 1.782932106 0.037417 124 39 SH19016 19016 YOR182C_15_678792_678190_INTRON_4_414 intron 30.572017 120.623147 30.572017 91.05113 60.8115735 1.783986241 -0.064815 124 40 SH17595 17595 YJL191W_10_73786_74610_INTRON_11_418 intron 26.586463 99.133447 26.586463 73.546984 50.0667235 1.699549171 -0.052751 124 41 SH5174 5174 snR13 snR13 26 43 43.474167 105.268405 74.371286 1.871405291 -0.035369 124 42 SH12866 12866 MT COX1 COX1ai1 27.071816 111.873228 27.071816 85.801412 56.436614 1.75156095 -0.170477 124 43 SH10600 10600 RUF8 RUF8 926 940 36.126436 100.024858 68.075647 1.832991778 -0.085288 124 44 SH13158 13158 MT COX1 intronic 5187.11562 9004.990934 5187.11562 3818.875314 4502.995467 3.65350151 -0.025777 124 45 SH19853 19853 Negative Control 32.667609 91.15586 61.9117345 1.791772971 0.018055 124 46 SH9693 9693 RUF4 RUF4 241 262 26.103791 70.820054 48.4619225 1.685400639 -0.05178 124 47 SH1992 1992 Lys3 5' flank 28.779819 86.80056 57.7901895 1.761854119 -0.071712 124 48 SH12069 12069 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7231 7249 28.970635 78.680141 53.825388 1.730987169 0.044 124 49 SH9959 9959 RUF5-1 RUF5-1 601 618 31.561096 91.968837 61.7649665 1.79074221 -0.037714 124 50 SH11753 11753 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5651 5669 958.702845 896.965595 927.83422 2.967470386 0.046479 124 51 SH6269 6269 snR42 snR42 126 146 28.167727 65.352286 46.7600065 1.669874563 0.17187 124 52 SH1101 1101 Gly4 5' flank 29.318495 88.957179 59.137837 1.771865436 -0.084858 124 53 SH1954 1954 Lys2 5' flank 27.58317 72.897685 50.2404275 1.701053326 0.026635 124 54 SH16529 16529 YER131W_5_423587_424307_INTRON_1_361 intron 29.260136 107.843936 29.260136 79.5838 54.421968 1.735774243 0.051302 124 55 SH8995 8995 snR17a / U3a U3a 261 273 39.036992 91.564644 65.300818 1.814918622 0.160746 124 56 SH13138 13138 MT COX1 cox1ai3/intronic 23.984379 101.014313 23.984379 78.029934 51.0071565 1.707631114 -0.307884 124 57 SH5301 5301 snR30 snR30 356 370 51.357776 118.270479 84.8141275 1.928468199 -0.120747 124 58 SH18313 18313 YML073C_13_124172_123227_INTRON_16_430 intron/exon 28.884156 111.986253 28.884156 84.102097 56.4931265 1.751995611 -0.028354 124 59 SH21384 21384 Lys3_4 spliced 329.877521 389.036667 359.457094 2.555647059 0.001836 124 60 SH10838 10838 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1076 1091 112.600236 157.658929 135.1295825 2.130750435 0.181096 124 61 SH17422 17422 YIL111W_9_155219_155762_INTRON_2_89 intron 28.072204 109.194716 28.072204 82.122512 55.097358 1.741130774 -0.05823 124 62 SH21832 21832 copy of SH16332 28.028102 77.543202 52.785652 1.72251589 -0.003746 124 63 SH21144 21144 YNL162W spliced 37.548012 90.801016 64.174514 1.807362588 0.144985 124 64 SH16680 16680 YGL030W_7_439087_439634_INTRON_4_233 intron 28.047249 103.547358 28.047249 76.500109 52.273679 1.718283067 0.0111 124 65 SH16108 16108 YDR064W_4_579453_580447_INTRON_22_560 intron 28.107046 117.087737 28.107046 89.980691 59.0438685 1.771174804 -0.159035 124 66 SH3599 3599 Val1 5' flank - tRNA8 8 27.606841 71.216267 49.411554 1.693828513 0.05068 124 67 SH18732 18732 YNL147W_14_350937_351380_INTRON_19_138 3' exon 28.907198 113.139188 28.907198 85.23199 57.069594 1.756404783 -0.040213 124 68 SH13162 13162 MT COX1 intronic 46.565109 154.072357 46.565109 108.507248 77.5361785 1.889504392 -0.037611 124 69 SH19051 19051 YOR234C_15_779404_778554_INTRON_20_546 intron 26.150946 108.149741 26.150946 82.998795 54.5748705 1.736992714 -0.202435 124 70 SH17951 17951 YLR185W_12_522665_523290_INTRON_8_366 5' exon 31.247302 123.98169 31.247302 93.734388 62.490845 1.795816397 -0.080504 124 71 SH6098 6098 snR37 3' 29.240674 76.969301 53.1049875 1.725135311 0.083492 124 72 SH11039 11039 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2081 2096 43459.74572 20324.51648 31892.1311 4.503683541 0.102781 124 73 SH19495 19495 YPT1 36.36996 91.564922 63.967441 1.805958977 0.100726 124 74 SH13577 13577 MT COX1 Exon 6 29.221532 104.030575 29.221532 75.809043 52.5152875 1.720285747 0.097466 124 75 SH3936 3936 RNase MRP RNaseMRP 96 112 33.343636 92.563332 62.953484 1.79901977 0.004448 124 76 SH21377 21377 Leu8_9 spliced 30.511631 75.152289 52.83196 1.722896723 0.187578 124 77 SH4142 4142 SRP RNA SRP RNA 601 615 51.242419 114.390457 82.816438 1.918116547 -0.057317 124 78 SH12734 12734 MT COX1 Exon1 28.808472 114.026021 28.808472 86.217549 57.5130105 1.759766101 -0.059955 124 79 SH16758 16758 YGL087C_7_346902_346404_INTRON_12_96 5' exon 31.459466 112.926447 31.459466 82.466981 56.9632235 1.755594558 0.126669 124 80 SH2976 2976 Ser1 3' flank 26.892743 92.447366 59.6700545 1.775756435 -0.259981 124 81 SH17699 17699 YKL006W_11_431544_432358_INTRON_130_527 3' exon 41.007375 135.940553 41.007375 95.933178 68.4702765 1.835502082 0.105128 124 82 SH9936 9936 RUF5-1 RUF5-1 486 503 27.565205 84.591715 56.07846 1.748796079 -0.12223 124 83 SH7333 7333 snR66 3' 28.086733 75.067473 51.577103 1.712456945 0.032679 124 84 SH13440 13440 MT COX1 intronic 28.203047 106.877711 28.203047 79.674664 53.9388555 1.731901727 -0.019171 124 85 SH4921 4921 snR9 snR9 11 32 32.945278 84.884025 58.9146515 1.770223313 0.143746 124 86 SH16839 16839 YGL178W_7_167356_170575_INTRON_4_643 intron 30.415224 107.448907 30.415224 78.033683 54.2244535 1.734195184 0.143946 124 87 SH17720 17720 YKL081W_11_282533_284097_INTRON_206_531 3' exon 27.850197 110.839206 27.850197 83.989009 55.919603 1.747564079 -0.095691 124 88 SH16018 16018 YDL189W_4_122079_123590_INTRON_1_99 5' exon 32.180091 116.129522 32.180091 84.949431 58.564761 1.767636375 0.111101 124 89 SH19122 19122 YPL031C_16_493033_492014_INTRON_18_119 3' exon 29.53879 118.940014 29.53879 90.401224 59.970007 1.7779341 -0.09975 124 90 SH11193 11193 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2851 2868 29.557817 69.923453 49.740635 1.696711325 0.199762 124 91 SH13434 13434 MT COX1 intronic 27.312109 92.938576 27.312109 66.626467 46.969288 1.671813977 0.093936 124 92 SH16817 16817 YGL178W_7_167356_170575_INTRON_4_643 intron 29.512373 105.101839 29.512373 76.589466 53.0509195 1.724692916 0.105872 124 93 SH18967 18967 YOR096W_15_505793_506766_INTRON_145_545 5' exon 31.494833 140.314578 31.494833 109.819745 70.657289 1.84915697 -0.391445 124 94 SH4300 4300 telomerase RNA telomerase 536 557 28.675762 72.925141 50.8004515 1.705867572 0.100774 124 95 SH4783 4783 snR5 snR5 86 105 28.008102 96.433035 62.2205685 1.793933975 -0.270888 124 96 SH10795 10795 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 861 878 29.466199 97.656267 63.561233 1.803192313 -0.222463 124 97 SH19114 19114 YPL031C_16_493033_492014_INTRON_18_119 5' exon 33.29078 122.35103 33.29078 90.06025 61.675515 1.790112785 0.058761 124 98 SH7483 7483 snR71 snR71 31 50 26.854906 73.11887 49.986888 1.6988561 -0.027801 124 99 SH7847 7847 snoRNA cluster1 snR74 27.313315 96.03098 27.313315 69.717665 48.51549 1.685880422 0.050502 124 100 SH16623 16623 YFL039C_6_54695_53260_INTRON_11_318 intron 71.483939 184.429477 71.483939 113.945538 92.7147385 1.967148778 0.271199 124 101 SH6462 6462 snR45 156-172 + 3' 156 28.391696 71.06897 49.730333 1.696621367 0.106653 124 102 SH209 209 Arg3 5' flank 32.721109 94.95674 63.8389245 1.805085562 -0.0635 124 103 SH5767 5767 snR35 snR35 21 33 30.104911 84.948189 57.52655 1.759868329 0.021906 124 104 SH6374 6374 snR43 snR43 111 123 29.900014 88.33612 59.118067 1.771720225 -0.047733 125 2 SH16628 16628 YFL039C_6_54695_53260_INTRON_11_318 intron 28.355106 111.124307 28.355106 83.769201 56.0621535 1.748669776 -0.059214 125 3 SH2734 2734 Pro5 tRNA-intron 51 67 76.214916 189.092633 132.6537745 2.122719612 -0.581696 125 4 SH9932 9932 RUF5-1 RUF5-1 466 486 27.476579 73.08899 50.2827845 1.70141932 0.016664 125 5 SH329 329 Arg5 5' flank 31.770417 92.012892 61.8916545 1.791632092 -0.029607 125 6 SH19882 19882 Negative Control 27.375337 77.901276 52.6383065 1.721301909 -0.052759 125 7 SH6563 6563 snR47 5' 27.806346 85.139802 56.473074 1.751841428 -0.112285 125 8 SH10857 10857 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1171 1184 110.266953 156.493143 133.380048 2.125090869 0.169293 125 9 SH1058 1058 Gly3 tRNA 26 40 31.13042 99.103728 65.117074 1.813694878 -0.192897 125 10 SH8737 8737 LSR1 / U2 RNA U2 326 345 29.03174 69.240173 49.1359565 1.691399415 0.174601 125 11 SH20935 20935 YLR406C spliced 35.996446 113.430853 74.7136495 1.873399951 -0.34768 125 12 SH17094 17094 YHL001W_8_104270_105084_INTRON_130_527 intron 28.954897 136.14206 28.954897 108.187163 68.57103 1.836140673 -0.432899 125 13 SH15008 15008 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.636527 118.261012 28.636527 90.624485 59.630506 1.775468495 -0.145085 125 14 SH14274 14274 MT VAR1 includes 5’ processing site VAR1 30.602842 155.65143 30.602842 126.048588 78.325715 1.893904368 -0.698791 125 15 SH3489 3489 Tyr1 5' flank - tRNA3 3 35.287792 162.393757 98.8407745 1.99493614 -1.088582 125 16 SH7241 7241 snR65 5' 28.888051 76.431008 52.6595295 1.721476974 0.067659 125 17 SH12960 12960 MT COX1 COX1ai2 31.616132 114.319671 31.616132 83.703539 57.6598355 1.760873399 0.110294 125 18 SH16057 16057 YDL219W_4_65243_65766_INTRON_66_136 5' exon 29.171674 110.282759 29.171674 82.111085 55.6413795 1.745397889 0.014296 125 19 SH12041 12041 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7091 7108 58.891883 140.709252 99.8005675 1.999133011 -0.320464 125 20 SH3509 3509 Tyr1 86-89 + 3' flank 86 24.117268 68.406013 46.2616405 1.665221029 -0.167909 125 21 SH20205 20205 YDR059C spliced 45.097281 86.598124 65.8477025 1.818540627 0.394507 125 22 SH7150 7150 snR63 3' 28.401851 73.09881 50.7503305 1.705438875 0.080308 125 23 SH1225 1225 Ile1 3' flank 27.868164 72.25748 50.062822 1.699515327 0.054895 125 24 SH19643 19643 RNA14 2.2 28.790696 81.773875 55.2822855 1.742585989 -0.006353 125 25 SH2905 2905 Pro8 tRNA 46 62 40.006186 100.08206 70.044123 1.845371702 -0.002538 125 26 SH21325 21325 YPR028W spliced 28.893342 89.175188 59.034265 1.77110416 -0.108196 125 27 SH16142 16142 YDR092W_4_629869_630598_INTRON_31_298 intron 31.648881 102.687406 31.648881 72.038525 51.843703 1.714696014 0.298896 125 28 SH13797 13797 MT COB intronic 29.710696 125.157722 29.710696 96.447026 63.078861 1.799883843 -0.192128 125 29 SH12622 12622 MT_15S MT_15S 128.94965 335.534043 128.94965 207.584393 168.2670215 2.225999007 -0.126829 125 30 SH14583 14583 MT 21S rRNA intronic 27.857068 100.121349 27.857068 73.264281 50.5606745 1.703812859 0.04085 125 31 SH6419 6419 snR45 5' 30.201318 85.374427 57.7878725 1.761836706 0.018442 125 32 SH8680 8680 LSR1 / U2 RNA U2 41 58 30.349751 84.244758 57.2972545 1.758133812 0.04561 125 33 SH890 890 Glu3 5' flank 28.291088 88.066629 58.1788585 1.764765196 -0.117037 125 34 SH17064 17064 YGR214W_7_920570_921783_INTRON_91_545 intron 30.778265 121.362852 30.778265 91.584587 61.181426 1.786619595 -0.064853 125 35 SH13436 13436 MT COX1 intronic 27.857966 101.552305 27.857966 74.694339 51.2761525 1.70991543 0.022258 125 36 SH11897 11897 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6371 6388 6513.048373 4858.072544 5685.560459 3.754773282 -0.11064 125 37 SH15016 15016 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " cox2 / ORF1exon1 26.397601 98.720199 26.397601 73.322598 49.8600995 1.697753141 -0.063548 125 38 SH15990 15990 YDL136W_4_217600_218367_INTRON_4_408 intron 30.995847 116.603164 30.995847 86.607317 58.801582 1.769389011 0.031018 125 39 SH9500 9500 RUF2 3' 29.208334 86.829786 58.01906 1.763570688 -0.052452 125 40 SH11458 11458 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4176 4192 235.220939 204.345539 219.783239 2.341994569 0.627062 125 41 SH21874 21874 copy of SH18249 27.434194 75.098762 51.266478 1.709833482 -0.012339 125 42 SH13940 13940 MT COB Cytbi3 27.406437 97.416471 27.406437 71.010034 49.2082355 1.692037792 0.039432 125 43 SH18454 18454 YMR143W_13_551927_552902_INTRON_25_568 intron 26.999783 106.833415 26.999783 80.833632 53.9167075 1.731723364 -0.115782 125 44 SH21672 21672 copy of SH9622 30.692713 71.065866 50.8792895 1.706541038 0.254705 125 45 SH14439 14439 MT 21S rRNA 21S rRNA3 27.769993 105.105961 27.769993 78.335968 53.0529805 1.724709787 -0.031361 125 46 SH3076 3076 Ser3 tRNA 76 90 977.837626 1085.058567 1031.448097 3.013447379 -0.226773 125 47 SH1786 1786 Leu8 5' flank 34.997812 88.82392 61.910866 1.791766879 0.129571 125 48 SH1614 1614 Leu5 5' flank 28.347086 79.835983 54.0915345 1.733129302 -0.011598 125 49 SH4078 4078 SRP RNA SRP RNA 281 296 37.868299 89.146213 63.507256 1.802823348 0.189594 125 50 SH11704 11704 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5406 5419 66.282618 103.436144 84.859381 1.92869986 0.380854 125 51 SH9721 9721 RUF4 RUF4 381 400 27.833853 78.900772 53.3673125 1.727275333 -0.034226 125 52 SH12346 12346 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.7271 107.052788 32.7271 75.325688 54.026394 1.732605981 0.317343 125 53 SH20729 20729 YJL177W spliced 32.149966 90.95894 61.554453 1.789259476 0.004109 125 54 SH8701 8701 LSR1 / U2 RNA U2 146 163 24.483856 77.588468 51.036162 1.707878007 -0.262747 125 55 SH3501 3501 Tyr1 tRNA-intron/exon 46 63 28.281839 79.730808 54.0063235 1.732444614 -0.01462 125 56 SH18069 18069 YLR344W_12_819312_820142_INTRON_20_466 intron 25.755683 95.692028 25.755683 70.936345 48.346014 1.684360673 -0.079208 125 57 SH8370 8370 snoRNA cluster 5 5' 30.217443 105.278925 30.217443 76.061482 53.1394625 1.725417157 0.157283 125 58 SH16009 16009 YDL137W_4_216158_217074_INTRON_1_332 intron 28.508666 118.026211 28.508666 90.517545 59.5131055 1.774612613 -0.149248 125 59 SH2923 2923 Pro8 3' flank 26.889632 67.872752 47.381192 1.675605982 0.04613 125 60 SH1724 1724 Leu7 5' flank 27.325136 78.150285 52.7377105 1.722121272 -0.059413 125 61 SH18922 18922 YOL121C_15_92849_92025_INTRON_21_410 intron 27.671262 115.120717 27.671262 88.449455 58.0603585 1.763879713 -0.159644 125 62 SH18216 18216 YML025C_13_225365_224406_INTRON_28_126 intron 30.396409 117.039666 30.396409 87.643257 59.019833 1.770997976 -0.013514 125 63 SH13771 13771 MT COB intronic 28.232372 106.585509 28.232372 79.353137 53.7927545 1.730723783 -0.013164 125 64 SH13964 13964 MT COB Cytbi3 29.502742 113.76164 29.502742 85.258898 57.38082 1.75876675 -0.010785 125 65 SH8236 8236 snoRNA cluster 3; 3' 28.14348 99.973077 28.14348 72.829597 50.4865385 1.703175595 0.06626 125 66 SH826 826 Glu1 3' flank 27.535541 72.642355 50.088948 1.69974191 0.026674 125 67 SH5975 5975 snR36 snR36 331 351 31.257687 89.239023 60.248355 1.779945194 -0.004031 125 68 SH7345 7345 snR68 5' 30.754881 67.585666 49.1702735 1.691702624 0.308789 125 69 SH4560 4560 U3b (snR17b) U3b 356 375 28.554338 72.860345 50.7073415 1.705070842 0.093669 125 70 SH20275 20275 YDR447C spliced 61.67855 131.446596 96.562573 1.984808829 -0.145689 125 71 SH16225 16225 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 33.105308 113.997868 33.105308 81.89256 57.498934 1.759659793 0.205733 125 72 SH17449 17449 YIL148W_9_68708_69528_INTRON_9_442 intron 28.475531 101.946705 28.475531 74.471174 51.4733525 1.711582455 0.066567 125 73 SH10197 10197 RUF6 RUF6 831 848 28.636084 81.71535 55.175717 1.741747985 -0.015782 125 74 SH13348 13348 MT COX1 COX1-ai5a 26.606709 108.466064 26.606709 82.859355 54.733032 1.738249507 -0.168196 125 75 SH17051 17051 YGR214W_7_920570_921783_INTRON_91_545 intron 28.915263 110.481468 28.915263 82.566205 55.740734 1.746172683 -0.007873 125 76 SH14720 14720 MT tRNA cys; tRNA his tRNA Cys 28.815942 110.533496 28.815942 82.717554 55.766748 1.74637532 -0.016189 125 77 SH10099 10099 RUF6 RUF6 341 360 26.692443 75.019374 50.8559085 1.706341417 -0.06411 125 78 SH6750 6750 snR50 5' 29.39046 81.77172 55.58109 1.744927059 0.032521 125 79 SH20632 20632 YHR123W spliced 32.104967 84.12587 58.1154185 1.76429137 0.123044 125 80 SH6947 6947 snR58 96 + 3' 96 27.53434 77.997458 52.765899 1.722353342 -0.043083 125 81 SH17683 17683 YKL006W_11_431544_432358_INTRON_130_527 intron 29.925429 118.861318 29.925429 89.935889 59.930659 1.777649053 -0.074361 125 82 SH17131 17131 YHR010W_8_126513_127484_INTRON_32_592 intron 27.789738 96.776053 27.789738 69.986315 48.8880265 1.689202506 0.080113 125 83 SH6536 6536 snR46 snR46 171 190 30.348772 78.845379 54.5970755 1.73716938 0.129464 125 84 SH7757 7757 snoRNA cluster1 snR76 69.032479 195.848645 69.032479 127.816166 98.4243225 1.993102434 0.021135 125 85 SH1744 1744 Leu7 tRNA 16 28 230.753515 267.093999 248.923757 2.396066347 0.161854 125 86 SH4394 4394 telomerase RNA telomerase 1006 1027 27.667071 71.54389 49.6054805 1.695529661 0.050472 125 87 SH2981 2981 Ser1 3' flank 27.534043 68.63454 48.0842915 1.682003221 0.081027 125 88 SH17612 17612 YJR021C_10_469271_468247_INTRON_317_396 5' exon 31.786328 114.987918 31.786328 84.20159 57.993959 1.763382757 0.108302 125 89 SH20422 20422 YGL031C spliced 33.80337 92.848573 63.3259715 1.801581861 0.009904 125 90 SH9765 9765 RUF4 RUF4 601 622 26.989359 78.776828 52.8830935 1.723316852 -0.090704 125 91 SH14936 14936 MT tRNA Asn tRNA / 3' 29.572136 166.8838 29.572136 138.311664 83.9419 1.923978795 -0.918478 125 92 SH683 683 Gln3 5' flank 30.727854 96.856197 63.7920255 1.804766392 -0.15744 125 93 SH223 223 Arg3 5' flank 29.242116 84.317775 56.7799455 1.754194971 -0.007711 125 94 SH20839 20839 YLL050C spliced 31.04988 102.121608 66.585744 1.823381257 -0.256026 125 95 SH16381 16381 YER007C-A_5_166884_166236_INTRON_12_114 intron 28.178376 111.377902 28.178376 84.199526 56.188951 1.749650924 -0.076125 125 96 SH4131 4131 SRP RNA SRP RNA 546 560 31.865451 77.022784 54.4441175 1.735950963 0.244764 125 97 SH1284 1284 Ile2 tRNA 116 128 33.481957 87.656191 60.569074 1.782250934 0.115659 125 98 SH14081 14081 MT COB Cytbi4 26.870128 99.78176 26.870128 73.911632 50.39088 1.702351943 -0.037058 125 99 SH15719 15719 YBR255C-A_2_727032_726576_INTRON_64_157 5' exon 31.514676 120.504159 31.514676 89.989483 60.7520795 1.783561148 -0.006027 125 100 SH15635 15635 YBR186W_2_600511_602318_INTRON_1552_1664 exon/intron 30.025708 111.845598 30.025708 82.81989 56.422799 1.751454627 0.057632 125 101 SH21751 21751 copy of SH12972 26.098806 67.833016 46.965911 1.671782751 -0.010796 125 102 SH15159 15159 MT tRNA Val 5' 30.609838 108.064722 30.609838 78.454884 54.532361 1.736654301 0.150574 125 103 SH18444 18444 YMR142C_13_551206_550205_INTRON_5_406 intron 28.089586 109.990012 28.089586 82.900426 55.495006 1.744253903 -0.066503 125 104 SH11900 11900 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6386 6401 98.415678 156.281357 127.3485175 2.104993894 0.042121 126 2 SH6364 6364 snR43 snR43 61 77 33.799188 102.802781 68.3009845 1.834426964 -0.197009 126 3 SH14799 14799 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys / intergenic 27.546525 99.889817 27.546525 73.343292 50.4449085 1.702817339 0.018227 126 4 SH244 244 Arg3 3' flank 27.603794 74.742257 51.1730255 1.709041095 0.004096 126 5 SH10348 10348 RUF7 RUF7 351 368 24.991826 72.049123 48.5204745 1.685925039 -0.152124 126 6 SH5033 5033 snR10 snR10 196 210 37.451863 90.42168 63.9367715 1.805750703 0.151294 126 7 SH6004 6004 snR37 5' 35.644833 76.39401 56.0194215 1.74833862 0.412177 126 8 SH7317 7317 snR66 76-86 + 3' 76 27.709189 73.547436 50.6283125 1.704393452 0.026899 126 9 SH8105 8105 snoRNA cluster 3; 5' 30.678916 121.298149 30.678916 91.619233 61.1490745 1.786389888 -0.069766 126 10 SH18430 18430 YMR142C_13_551206_550205_INTRON_5_406 intron 31.083497 122.275192 31.083497 92.191695 61.637596 1.789845692 -0.061867 126 11 SH6611 6611 snR47 3' 26.648272 67.323022 46.985647 1.671965212 0.03657 126 12 SH3276 3276 Thr2 5' flank 28.852912 81.644339 55.2486255 1.742321478 -0.000698 126 13 SH21470 21470 copy of SH1240 30.968693 92.03415 61.5014215 1.788885154 -0.064173 126 14 SH18473 18473 YMR143W_13_551927_552902_INTRON_25_568 intron 28.570023 120.979365 28.570023 93.409342 60.9896825 1.785256373 -0.195019 126 15 SH2499 2499 Pro1 5' flank - tRNA2 2 67.986662 139.183556 103.585109 2.015297327 -0.15203 126 16 SH18871 18871 YNR053C_14_723108_721117_INTRON_811_1341 intron 29.053773 100.838612 29.053773 72.784839 50.919306 1.706882476 0.127377 126 17 SH13144 13144 MT COX1 intronic 29.363895 102.258559 29.363895 73.894664 51.6292795 1.712896064 0.132231 126 18 SH5847 5847 snR35 snR35 421 440 26.822266 93.778837 60.3005515 1.780321284 -0.285615 126 19 SH19576 19576 AEP2/ATP13 0.6 25.956583 75.564369 50.760476 1.705525686 -0.124892 126 20 SH4158 4158 SRP RNA 3' 38.336998 86.927631 62.6323145 1.796798461 0.251284 126 21 SH17937 17937 YLR093C_12_327416_326514_INTRON_17_157 intron 27.625409 124.909249 27.625409 98.28384 62.9546245 1.799027638 -0.318711 126 22 SH10037 10037 RUF6 RUF6 31 48 26.427419 78.124632 52.2760255 1.718302561 -0.122246 126 23 SH2018 2018 Lys3 tRNA-exon/intron 36 53 27.098627 78.395031 52.746829 1.722196356 -0.078227 126 24 SH20891 20891 YLR287C-A spliced 34.040378 96.39333 65.216854 1.814359845 -0.060207 126 25 SH8230 8230 snoRNA cluster 3; 3' 30.475571 114.127936 30.475571 84.652365 57.563968 1.760150723 0.043681 126 26 SH14740 14740 MT tRNA cys; tRNA his 3' 27.223737 97.520543 27.223737 71.296806 49.2602715 1.692496801 0.022683 126 27 SH11163 11163 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2701 2724 29.814699 75.42562 52.6201595 1.72115216 0.140407 126 28 SH10463 10463 RUF8 RUF8 241 258 30.132135 90.669594 60.4008645 1.781043155 -0.077717 126 29 SH9054 9054 snR17a / U3a 3' 28.067446 80.931745 54.4995955 1.736393279 -0.043926 126 30 SH17957 17957 YLR185W_12_522665_523290_INTRON_8_366 intron 30.505004 122.03825 30.505004 92.533246 61.519125 1.78901015 -0.092731 126 31 SH19026 19026 YOR182C_15_678792_678190_INTRON_4_414 intron 29.009813 111.141618 29.009813 83.131805 56.070809 1.748736822 -0.008557 126 32 SH5900 5900 snR36 5' 27.689965 72.472825 50.081395 1.699676417 0.039686 126 33 SH3581 3581 Val1 5' flank 27.824479 73.619752 50.7221155 1.705197359 0.033952 126 34 SH4818 4818 snR5 3' 30.348348 90.287883 60.3181155 1.780447765 -0.061621 126 35 SH2962 2962 Ser1 tRNA 41 55 30.08133 72.666466 51.373898 1.710742519 0.194494 126 36 SH18432 18432 YMR142C_13_551206_550205_INTRON_5_406 intron 29.43056 122.251349 29.43056 93.820789 61.6256745 1.789761686 -0.1621 126 37 SH8545 8545 snR19 / U1 RNA U1 221 236 33.621907 80.651127 57.136517 1.756913763 0.250088 126 38 SH1333 1333 Ile3 tRNA-intron 46 61 29.237476 77.712798 53.475137 1.728151906 0.073661 126 39 SH9193 9193 snR7 U5 RNA 3' 27.496088 73.084868 50.290478 1.701485764 0.018085 126 40 SH19188 19188 YPL079W_16_406631_407534_INTRON_12_432 intron 27.867671 107.195277 27.867671 80.327606 54.0976385 1.733178307 -0.049883 126 41 SH1243 1243 Ile2 5' flank 32.625041 95.735453 64.180247 1.807401384 -0.082598 126 42 SH16292 16292 YDR450W_4_1359912_1360787_INTRON_48_482 intron 30.031645 116.514856 30.031645 87.483211 58.757428 1.769062777 -0.026845 126 43 SH12323 12323 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.37568 103.190031 28.37568 75.814351 52.0950155 1.716796172 0.042051 126 44 SH17477 17477 YJL001W_10_434855_435618_INTRON_66_181 intron 28.637686 109.699294 28.637686 82.061608 55.349647 1.743114855 -0.01991 126 45 SH3716 3716 Val3 61-73 + 3' flank 61 48.286337 106.429694 77.3580155 1.88850532 0.033322 126 46 SH795 795 Glu1 5' flank - tRNA7 7 32.22859 97.520547 64.8745685 1.812074482 -0.130563 126 47 SH3063 3063 Ser3 tRNA 11 25 1031.28954 1832.864936 1432.077238 3.155966442 -0.978045 126 48 SH5350 5350 snR30 601 + 3' 601 28.458689 78.700772 53.5797305 1.729000525 0.010144 126 49 SH8414 8414 snoRNA cluster 5 snR190 38.097795 138.646074 38.097795 101.548279 69.823037 1.843998735 -0.072751 126 50 SH6099 6099 snR37 3' 29.501477 85.830966 57.6662215 1.760921496 -0.021188 126 51 SH21922 21922 copy of SH20202 130.141507 165.689846 147.9156765 2.170014204 0.266422 126 52 SH17557 17557 YJL189W_10_75932_76473_INTRON_7_392 intron 27.716895 109.327243 27.716895 82.610348 55.1636215 1.74165277 -0.08816 126 53 SH6845 6845 snR52 3' 31.81214 94.891843 63.3519915 1.801760272 -0.086191 126 54 SH19676 19676 SIR1 2.4 26.279538 67.686674 46.983106 1.671941724 0.004567 126 55 SH12259 12259 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 38.721635 139.988991 38.721635 102.267356 70.4944955 1.848155207 -0.073942 126 56 SH2301 2301 Phe2 3' flank 31.895574 84.023739 57.9596565 1.763125803 0.116165 126 57 SH15666 15666 YBR189W_2_604466_605466_INTRON_8_420 intron/exon 27.822427 103.76542 27.822427 76.942993 52.38271 1.719187963 -0.009843 126 58 SH11643 11643 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5101 5114 66.977751 104.673558 85.8256545 1.933617124 0.367725 126 59 SH8773 8773 LSR1 / U2 RNA U2 506 524 28.672767 69.775221 49.223994 1.692176849 0.143253 126 60 SH3864 3864 RNaseP RNaseP 286 298 38.260895 98.933144 68.5970195 1.836305246 -0.015422 126 61 SH14518 14518 MT 21S rRNA 21S rRNA3 34.103851 123.256272 34.103851 90.152421 62.128136 1.793288324 0.077308 126 62 SH20351 20351 YER102W spliced 27.766217 77.947974 52.8570955 1.723103295 -0.026646 126 63 SH19425 19425 YPR132W_16_794960_795762_INTRON_66_430 intron 28.177492 107.034929 28.177492 79.857437 54.0174645 1.732534195 -0.023173 126 64 SH7960 7960 snoRNA cluster 2 5' 28.159075 98.376568 28.159075 71.217493 49.688284 1.696253999 0.088806 126 65 SH16233 16233 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 30.206118 124.205998 30.206118 94.99988 62.602999 1.796595139 -0.146607 126 66 SH19637 19637 RNA14 2.2 32.016689 95.086867 63.551778 1.803127705 -0.084882 126 67 SH18027 18027 YLR306W_12_744151_744851_INTRON_4_137 3' exon 34.96531 121.00225 34.96531 87.03694 61.001125 1.785337844 0.170047 126 68 SH14736 14736 MT tRNA cys; tRNA his 3' 26.721984 101.070699 26.721984 75.348715 51.0353495 1.707871093 -0.066183 126 69 SH1081 1081 Gly3 3' flank 60.14458 118.33026 89.23742 1.950547006 0.028251 126 70 SH18583 18583 YNL050C_14_534978_534075_INTRON_18_108 5' exon 30.812456 119.746626 30.812456 89.93417 60.373313 1.780845009 -0.035236 126 71 SH21228 21228 YOR234C spliced 32.46235 95.821665 64.1420075 1.807142548 -0.088699 126 72 SH19835 19835 Negative Control 27.704098 81.980185 54.8421415 1.739114405 -0.081364 126 73 SH16721 16721 YGL033W_7_435621_436347_INTRON_56_125 5' exon 32.253024 117.865307 32.253024 86.612283 59.4326535 1.774025121 0.084143 126 74 SH8310 8310 snoRNA cluster4 intergenic 28.326303 104.025317 28.326303 76.699014 52.5126585 1.720264005 0.027154 126 75 SH11572 11572 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4746 4759 60.077855 115.465819 87.771837 1.943355188 0.074537 126 76 SH11469 11469 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4231 4246 1014.872142 892.524881 953.6985115 2.979411105 0.129034 126 77 SH3367 3367 Thr4 5' flank 27.417389 82.624183 55.020786 1.74052679 -0.108799 126 78 SH14351 14351 MT ORF9 and ORF10 (hypothetical) 5' 30.03666 107.616549 30.03666 78.579889 54.3082745 1.734866004 0.113363 126 79 SH10711 10711 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 441 458 27.927775 86.895004 57.4113895 1.758998058 -0.124506 126 80 SH3017 3017 Ser2 tRNA 46 58 28.079714 85.75082 56.915267 1.755228778 -0.101012 126 81 SH11315 11315 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3461 3474 661.108178 572.835467 616.9718225 2.79026533 0.270489 126 82 SH18614 18614 YNL069C_14_494998_493953_INTRON_29_477 intron 30.244096 116.663255 30.244096 87.419159 58.8316275 1.769610863 -0.016277 126 83 SH3903 3903 RNase MRP 5' 29.929835 89.956552 59.9431935 1.777739876 -0.074519 126 84 SH13184 13184 MT COX1 Exon4 31.941565 132.135999 31.941565 101.194434 66.5679995 1.823265506 -0.213305 126 85 SH1897 1897 Lys1 5' flank 29.429337 93.470528 61.4499325 1.78852141 -0.156369 126 86 SH21227 21227 YOR234C spliced 36.579463 106.237153 71.408308 1.853748743 -0.199319 126 87 SH9450 9450 RUF2 RUF2 91 107 27.143202 80.829975 53.9865885 1.732285885 -0.105755 126 88 SH1737 1737 Leu7 5' flank 29.103046 81.65329 55.378168 1.743338584 0.015456 126 89 SH2078 2078 Lys4 tRNA-intron/exon 56 72 86.811686 207.457125 147.1344055 2.167714239 -0.594065 126 90 SH4534 4534 U3b (snR17b) U3b 226 240 36.026322 86.171924 61.099123 1.786034977 0.215881 126 91 SH11504 11504 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4406 4423 284.106342 279.890877 281.9986095 2.450246967 0.345597 126 92 SH20885 20885 YLR275W spliced 29.484071 93.314988 61.3995295 1.788165043 -0.151306 126 93 SH4814 4814 snR5 3' 29.110897 97.438712 63.2748045 1.801230812 -0.23525 126 94 SH3294 3294 Thr2 71-72 + 3' flank 71 28.550219 57.786297 43.168258 1.635164524 0.318934 126 95 SH6942 6942 snR58 snR58 71 88 27.978203 97.882543 62.930373 1.798860306 -0.295398 126 96 SH18324 18324 YML085C_13_99400_97941_INTRON_26_141 3' exon 29.581701 119.928981 29.581701 91.34728 60.4644905 1.781500398 -0.113912 126 97 SH10927 10927 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1521 1536 31.268347 65.753915 48.511131 1.6858414 0.367102 126 98 SH20859 20859 YLR078C spliced 126.638473 153.534228 140.0863505 2.146395821 0.364148 126 99 SH5300 5300 snR30 snR30 351 367 44.688287 111.193195 77.940741 1.89176453 -0.122822 126 100 SH6472 6472 snR45 3' 29.789293 77.124313 53.456803 1.728002982 0.116502 126 101 SH8851 8851 LSR1 / U2 RNA U2 896 913 69.837681 158.373299 114.10549 2.05730654 -0.359631 126 102 SH13911 13911 MT COB Cytbi3 28.245529 100.69714 28.245529 73.451611 50.84857 1.706278744 0.065069 126 103 SH7655 7655 snoRNA cluster1 5' 30.298938 113.947387 30.298938 84.648449 57.4736935 1.759469108 0.035972 126 104 SH3057 3057 Ser3 5' flank 30.054013 91.587881 60.820947 1.784053178 -0.09678 127 2 SH18972 18972 YOR096W_15_505793_506766_INTRON_145_545 intron 31.972707 108.717676 31.972707 77.744969 54.858838 1.739246604 0.239544 127 3 SH4337 4337 telomerase RNA telomerase 721 741 27.630542 75.783292 51.706917 1.713548644 -0.007678 127 4 SH9748 9748 RUF4 RUF4 516 532 29.504398 95.052526 62.278462 1.794337879 -0.178923 127 5 SH12932 12932 MT COX1 COX1ai2 30.90366 111.942651 30.90366 82.038991 56.4713255 1.751827982 0.110861 127 6 SH17104 17104 YHL001W_8_104270_105084_INTRON_130_527 3' exon 32.417601 126.351736 32.417601 94.934135 63.675868 1.803974874 -0.070982 127 7 SH9554 9554 RUF3 RUF3 156 170 823.641165 692.265752 757.9534585 2.879642539 0.256146 127 8 SH1094 1094 Gly4 5' flank 26.836506 73.822588 50.329547 1.701823021 -0.038312 127 9 SH750 750 Gln4 tRNA 21 38 27.652546 75.850317 51.7514315 1.713922367 -0.007063 127 10 SH11743 11743 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5601 5618 795.882755 709.543892 752.7133235 2.876629603 0.17244 127 11 SH5445 5445 snR31 3' 26.273856 75.252921 50.7633885 1.705550604 -0.097532 127 12 SH3699 3699 Val3 5' flank 33.189231 88.397773 60.793502 1.783857162 0.090873 127 13 SH15746 15746 YCR031C_3_178212_177492_INTRON_8_314 5' exon 31.016035 120.778724 31.016035 90.762689 60.889362 1.784541424 -0.040608 127 14 SH7432 7432 snR69 snR69 61 78 83.960929 147.946718 115.9538235 2.064285074 -0.037753 127 15 SH8532 8532 snR19 / U1 RNA U1 156 172 31.432943 138.502461 84.967702 1.929253873 -0.869846 127 16 SH9235 9235 snR6 / U6 RNA U6 46 62 108.439254 307.274501 207.8568775 2.317764399 -0.996161 127 17 SH11603 11603 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4901 4920 13315.61677 8122.553969 10719.08537 4.03015773 0.007545 127 18 SH4634 4634 snR3 snR3 86 102 276.819277 527.091973 401.955625 2.604178111 -0.71097 127 19 SH4342 4342 telomerase RNA telomerase 746 764 27.710758 75.234195 51.4724765 1.711575064 0.005065 127 20 SH4527 4527 U3b (snR17b) U3b 191 205 40.186695 94.907363 67.547029 1.829606252 0.110669 127 21 SH17688 17688 YKL006W_11_431544_432358_INTRON_130_527 intron 25.299092 94.637534 25.299092 70.338442 47.818767 1.679598374 -0.105533 127 22 SH10000 10000 RUF5-1 3' 28.50752 88.018923 58.2632215 1.765394494 -0.105999 127 23 SH8226 8226 snoRNA cluster 3; snR51/3' 27.202399 103.116876 27.202399 76.914477 52.058438 1.716491133 -0.051936 127 24 SH16236 16236 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.972363 113.716628 29.972363 84.744265 57.358314 1.758596377 0.019718 127 25 SH14926 14926 MT tRNA Asn 5' 30.066855 108.943509 30.066855 79.876654 54.9717545 1.740139598 0.098869 127 26 SH11221 11221 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2991 3013 27.65379 70.888516 49.271153 1.692592725 0.058378 127 27 SH12598 12598 MT_15S MT_15S 29.973459 117.484545 29.973459 88.511086 59.2422725 1.772631709 -0.047511 127 28 SH20951 20951 YLR448W spliced 32.592879 89.025496 60.8091875 1.783969201 0.055659 127 29 SH7045 7045 snR62 snR62 16 35 28.050554 70.152512 49.101533 1.691095051 0.095828 127 30 SH15826 15826 YDL064W_4_337486_338069_INTRON_39_148 intron/exon 71.077411 200.973416 71.077411 130.896005 100.986708 2.004264215 0.007511 127 31 SH8338 8338 snoRNA cluster4 snR53 27.05695 107.945806 27.05695 81.888856 54.472903 1.736180521 -0.124783 127 32 SH17361 17361 YIL052C_9_257061_256224_INTRON_38_509 intron 28.958497 110.235908 28.958497 82.277411 55.617954 1.745215009 -0.001549 127 33 SH4951 4951 snR9 snR9 161 178 31.440665 77.907522 54.6740935 1.737781591 0.208043 127 34 SH11587 11587 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4821 4834 775.038999 465.608622 620.3238105 2.792618451 0.806217 127 35 SH5853 5853 snR35 snR35 451 470 27.229587 81.780226 54.5049065 1.736435599 -0.11147 127 36 SH2358 2358 Phe3 3' flank 30.200449 74.380995 52.290722 1.718424638 0.178592 127 37 SH6029 6029 snR37 snR37 61 80 26.508871 80.846866 53.6778685 1.729795262 -0.15052 127 38 SH7033 7033 snR62 5' 31.505784 97.157221 64.3315025 1.808423695 -0.142371 127 39 SH19151 19151 YPL075W_16_412249_415357_INTRON_9_759 intron 32.331143 126.108238 32.331143 94.777095 63.554119 1.803143703 -0.069902 127 40 SH13807 13807 MT COB Exon2/cytbi2 27.962013 104.973736 27.962013 78.011723 52.986868 1.72416825 -0.014225 127 41 SH1489 1489 Leu3 5' flank 27.787682 72.712531 50.2501065 1.701136987 0.043302 127 42 SH4812 4812 snR5 3' 27.518271 79.296293 53.407282 1.727600476 -0.060718 127 43 SH18992 18992 YOR122C_15_552886_552297_INTRON_14_222 5' exon 29.563554 117.590716 29.563554 89.027162 59.295358 1.773020695 -0.074934 127 44 SH1787 1787 Leu8 5' flank 29.036876 84.41247 56.724673 1.753772001 -0.022106 127 45 SH15227 15227 MT COX3 cox3 27.376832 107.768253 27.376832 81.391421 54.3841265 1.735472157 -0.096537 127 46 SH16161 16161 YDR129C_4_715372_713333_INTRON_22_132 intron 28.349456 108.28783 28.349456 80.938374 54.643915 1.737541807 -0.025171 127 47 SH19497 19497 YPT1 28.541119 81.455422 54.9982705 1.740349033 -0.018851 127 48 SH16534 16534 YER131W_5_423587_424307_INTRON_1_361 intron 26.612646 94.056254 26.612646 68.443608 47.528127 1.6769507 0.018152 127 49 SH16847 16847 YGL178W_7_167356_170575_INTRON_4_643 3' exon 27.060777 102.133055 27.060777 76.072278 51.5665275 1.712367887 -0.051091 127 50 SH10537 10537 RUF8 RUF8 611 630 27.54018 91.063598 59.301889 1.773068528 -0.20481 127 51 SH14209 14209 MT ATP9 5' 27.732137 101.846551 27.732137 75.114414 51.4232755 1.711159736 0.008114 127 52 SH1895 1895 Lys1 5' flank 29.8272 80.389491 55.1083455 1.741217373 0.077383 127 53 SH14366 14366 MT ORF9 and ORF10 (hypothetical) ORF9 / intergenic 26.802139 100.950088 26.802139 75.147949 50.975044 1.707357609 -0.057855 127 54 SH8779 8779 LSR1 / U2 RNA U2 536 548 28.068254 72.795082 50.431668 1.702703332 0.06156 127 55 SH1890 1890 Lys1 5' flank 47.332919 111.873859 79.603389 1.900931558 -0.083878 127 56 SH3097 3097 Ser3 3' flank 29.61667 84.61605 57.11636 1.756760522 0.006082 127 57 SH2929 2929 Pro8 3' flank 25.686211 75.934807 50.810509 1.705953546 -0.14975 127 58 SH730 730 Gln4 5' flank 46.606723 100.338455 73.472589 1.866125344 0.121552 127 59 SH7688 7688 snoRNA cluster1 intergenic 26.393846 100.051362 26.393846 74.657516 50.525681 1.703512176 -0.081135 127 60 SH8676 8676 LSR1 / U2 RNA U2 21 38 28.929616 77.313604 53.12161 1.725271229 0.058873 127 61 SH10282 10282 RUF7 RUF7 21 36 38.614388 104.038095 71.3262415 1.85324934 -0.111633 127 62 SH15536 15536 YBR078W_2_393082_394818_INTRON_59_388 intron 27.510103 94.702596 27.510103 68.192493 47.851298 1.679893723 0.085553 127 63 SH11812 11812 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5946 5967 27.75684 75.342083 51.5494615 1.712224133 0.006761 127 64 SH12456 12456 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank / 5S 29.986251 111.396344 29.986251 82.410093 56.198172 1.749722189 0.062549 127 65 SH2059 2059 Lys4 5' flank 34.483382 93.872531 64.1779565 1.807385885 0.004656 127 66 SH14628 14628 MT 21S rRNA Sce1 endonuc 24.978299 93.918803 24.978299 69.940504 47.4594015 1.676322257 -0.124664 127 67 SH3044 3044 Ser3 5' flank 34.052298 80.600476 57.326387 1.758354571 0.268084 127 68 SH15599 15599 YBR089C-A_2_426588_426148_INTRON_1_114 intron 29.265016 119.909523 29.265016 91.644507 60.4547615 1.781430512 -0.133343 127 69 SH13288 13288 MT COX1 Exon 5a / COX1 ai5 26.687304 97.2598 26.687304 71.572496 49.1299 1.69134588 -0.019346 127 70 SH14539 14539 MT 21S rRNA 21S rRNA3 26.115552 92.368558 26.115552 67.253006 46.684279 1.669170656 -0.00132 127 71 SH9846 9846 RUF5-1 RUF5-1 36 57 25.495235 82.280027 53.887631 1.731489092 -0.241573 127 72 SH2596 2596 Pro3 5' flank 33.692252 87.85056 60.771406 1.783699284 0.119452 127 73 SH15644 15644 YBR189W_2_604466_605466_INTRON_8_420 5' exon 35.963906 125.01394 35.963906 90.050034 63.00697 1.799388595 0.125007 127 74 SH16214 16214 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 28.924048 118.760479 28.924048 90.836431 59.8802395 1.777283529 -0.135327 127 75 SH14733 14733 MT tRNA cys; tRNA his tRNA his 30.867961 109.435721 30.867961 79.56776 55.2178605 1.742079575 0.152293 127 76 SH9095 9095 snR14 / U4 RNA U4 91 107 29.392498 72.047737 50.7201175 1.705180251 0.159408 127 77 SH18893 18893 YOL120C_15_94401_93394_INTRON_113_559 intron 29.883931 108.392463 29.883931 79.508532 54.6962315 1.737957405 0.091995 127 78 SH6870 6870 snR56 5' 28.823137 79.974723 54.39893 1.735590357 0.018043 127 79 SH20090 20090 YDL012C spliced 30.123222 85.559269 57.8412455 1.762237636 0.011631 127 80 SH16713 16713 YGL031C_7_438393_437938_INTRON_1_456 intron 28.029649 98.943903 28.029649 71.914254 49.9719515 1.69872631 0.070591 127 81 SH1471 1471 Leu2 3' flank 30.521363 76.87747 53.6994165 1.729969567 0.165455 127 82 SH18717 18717 YNL130C_14_381156_379555_INTRON_30_470 intron 30.207436 98.75437 30.207436 69.546934 49.877185 1.697901935 0.246308 127 83 SH11797 11797 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5871 5889 515.337567 528.441748 521.8896575 2.71757869 0.078741 127 84 SH19277 19277 YPL143W_16_282121_282969_INTRON_20_544 intron 31.535124 110.18839 31.535124 79.653266 55.594195 1.745029446 0.183587 127 85 SH7454 7454 snR69 3' 29.084453 79.569397 54.326925 1.735015124 0.040136 127 86 SH11207 11207 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2921 2941 26.915005 74.959651 50.937328 1.70703616 -0.047355 127 87 SH8179 8179 snoRNA cluster 3; snR70 31.533887 104.715985 31.533887 74.182098 52.8579925 1.723110665 0.26268 127 88 SH10167 10167 RUF6 RUF6 681 695 33.64749 89.283427 61.4654585 1.788631126 0.085462 127 89 SH19773 19773 Negative Control 31.131225 85.572982 58.3521035 1.766056516 0.055437 127 90 SH19145 19145 YPL075W_16_412249_415357_INTRON_9_759 intron 29.024146 110.769888 29.024146 82.745742 55.884944 1.74729482 -0.002966 127 91 SH10200 10200 RUF6 RUF6 846 863 29.47389 70.937554 50.205722 1.700753217 0.180166 127 92 SH4764 4764 snR5 5' - 10 10 29.527738 81.167014 55.347376 1.743097036 0.048733 127 93 SH21703 21703 copy of SH10878 1275.663629 958.126574 1116.895102 3.048012386 0.318333 127 94 SH2721 2721 Pro5 5' flank - tRNA2 2 37.161618 81.858695 59.5101565 1.774591092 0.346674 127 95 SH6483 6483 snR46 5' 27.423008 62.790799 45.1069035 1.654243015 0.159235 127 96 SH8799 8799 LSR1 / U2 RNA U2 636 650 29.182253 101.871742 65.5269975 1.816420269 -0.304074 127 97 SH13726 13726 MT COB 5'/Exon1 26.917259 91.847236 26.917259 65.929977 46.423618 1.666738984 0.075975 127 98 SH19468 19468 ADH1 58.511179 118.172082 88.3416305 1.946165411 0.004601 127 99 SH12516 12516 MT_ORF6 + ORF7 (hypothetical) ORF6/7 27.308206 94.478821 27.308206 68.170615 47.7394105 1.678877052 0.071675 127 100 SH1297 1297 Ile2 3' flank 27.820809 69.702561 48.761685 1.688078705 0.086164 127 101 SH18738 18738 YNL162W_14_331319_332151_INTRON_5_516 intron 30.396229 125.555077 30.396229 96.158848 63.2775385 1.801249577 -0.156968 127 102 SH2083 2083 Lys4 tRNA 81 93 34.835594 88.672311 61.7539525 1.790664759 0.129069 127 103 SH15150 15150 MT tRNA Thr1 reverse complement 3' 27.801345 103.391588 27.801345 76.590243 52.195794 1.717635508 -0.006671 127 104 SH4507 4507 U3b (snR17b) U3b 91 108 32.00439 83.209822 57.607106 1.760476058 0.135782 128 2 SH1257 1257 Ile2 5' flank 27.494681 73.394761 50.444721 1.702815724 0.013926 128 3 SH15287 15287 MT 9S rRNA 9S 29.642983 118.166159 29.642983 89.523176 59.5830795 1.775122946 -0.079938 128 4 SH8544 8544 snR19 / U1 RNA U1 216 233 27.008075 71.675274 49.3416745 1.693213884 0.002286 128 5 SH21294 21294 YPL175W spliced 39.100499 94.989488 67.0449935 1.826366353 0.086341 128 6 SH7728 7728 snoRNA cluster1 intergenic 27.99511 111.290662 27.99511 84.295552 56.145331 1.749313647 -0.08956 128 7 SH17141 17141 YHR010W_8_126513_127484_INTRON_32_592 intron 29.742955 116.660063 29.742955 87.917108 58.8300315 1.769599081 -0.047427 128 8 SH6416 6416 snR45 5' 31.991802 92.146704 62.069253 1.792876519 -0.022561 128 9 SH10819 10819 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 981 999 105.152054 163.463796 134.307925 2.128101639 0.038962 128 10 SH4548 4548 U3b (snR17b) U3b 296 315 27.198446 79.295861 53.2471535 1.726296396 -0.082739 128 11 SH11102 11102 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2396 2413 36.810889 76.661703 56.736296 1.75386098 0.449849 128 12 SH15360 15360 YBL026W_2_170585_171000_INTRON_55_182 intron/exon 30.594288 124.332022 30.594288 94.737734 62.666011 1.797032051 -0.125242 128 13 SH12518 12518 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.715831 112.223482 28.715831 84.507651 56.611741 1.752906511 -0.044183 128 14 SH20176 20176 YDL189W spliced 150.128314 197.636208 173.882261 2.240255279 0.137851 128 15 SH13425 13425 MT COX1 intronic 26.798616 105.820976 26.798616 80.02236 53.410488 1.727626546 -0.119774 128 16 SH7439 7439 snR69 96-101 + 3' 96 28.74413 78.165862 53.454996 1.727988301 0.035777 128 17 SH2223 2223 Phe1 5' flank - tRNA7 7 30.491862 86.198763 58.3453125 1.76600597 0.016391 128 18 SH12125 12125 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7511 7528 29.94728 92.232528 61.089904 1.785969443 -0.112392 128 19 SH3926 3926 RNase MRP RNaseMRP 46 67 25.052283 74.027168 49.5397255 1.694953596 -0.17346 128 20 SH2116 2116 Met1 5' flank 29.022404 84.526436 56.77442 1.754152706 -0.024396 128 21 SH12917 12917 MT COX1 COX1ai2 35.948845 130.810307 35.948845 95.861462 65.9051535 1.818919376 -0.002346 128 22 SH20665 20665 YIL052C spliced 39.627924 100.830713 70.2293185 1.846518454 -0.025726 128 23 SH5189 5189 snR13 snR13 101 121 29.538371 72.967751 51.253061 1.709719808 0.156032 128 24 SH14109 14109 MT COB intronic 27.994933 106.071439 27.994933 79.076506 53.5357195 1.728643644 -0.025581 128 25 SH4787 4787 snR5 snR5 106 125 28.070306 78.095046 53.082676 1.724952808 -0.008011 128 26 SH21391 21391 Phe1_5 spliced 71.630933 124.482963 98.056948 1.991478372 0.108317 128 27 SH10409 10409 RUF8 5' 29.501427 90.570235 60.035831 1.778410526 -0.104333 128 28 SH17658 17658 YKL002W_11_437416_438182_INTRON_61_128 intron 27.382919 107.61137 27.382919 81.228451 54.305685 1.734845296 -0.094112 128 29 SH2632 2632 Pro3 3' flank 27.622441 69.684649 48.653545 1.687114489 0.07263 128 30 SH12163 12163 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7701 7717 90.510419 139.714467 115.112443 2.061122271 0.147141 128 31 SH15596 15596 YBR089C-A_2_426588_426148_INTRON_1_114 intron 28.312213 121.595368 28.312213 94.283155 61.297684 1.787444066 -0.221555 128 32 SH3271 3271 Thr2 5' flank 47.231515 105.846591 76.539053 1.883883084 0.02457 128 33 SH132 132 Arg1 36-50 36 50 35.023169 94.546695 64.784932 1.811474007 0.0034 128 34 SH14229 14229 MT ATP9 ATP9/3 26.535293 99.906736 26.535293 74.371443 50.453368 1.702890163 -0.067158 128 35 SH12250 12250 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.152228 112.740187 31.152228 82.587959 56.8700935 1.754883942 0.111266 128 36 SH14050 14050 MT COB Cytbi4 28.415903 114.761222 28.415903 87.345319 57.880611 1.762533107 -0.098423 128 37 SH2067 2067 Lys4 tRNA 1 17 46.612139 84.501432 65.5567855 1.81661765 0.472244 128 38 SH15079 15079 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.616937 92.522376 26.616937 66.905439 46.761188 1.669885536 0.040274 128 39 SH12808 12808 MT COX1 COX1ai1 27.446338 101.47829 27.446338 75.031952 51.239145 1.709601874 -0.010633 128 40 SH4702 4702 snR4 snR4 46 65 27.736949 76.885062 52.3110055 1.718593068 -0.014887 128 41 SH19784 19784 Negative Control 32.098868 84.959717 58.5292925 1.767373274 0.107532 128 42 SH14496 14496 MT 21S rRNA 21S rRNA3 38.828688 136.128514 38.828688 98.299826 68.564257 1.836097774 0.009944 128 43 SH19261 19261 YPL143W_16_282121_282969_INTRON_20_544 intron 27.175652 99.132973 27.175652 72.957321 50.0664865 1.699547115 -0.002814 128 44 SH16784 16784 YGL103W_7_310965_311925_INTRON_50_560 intron 31.672938 110.679896 31.672938 80.006958 55.839948 1.746945005 0.18257 128 45 SH14809 14809 "MT tRNAs (Lys, Arg1, Gly)" intergenic 26.676436 97.701813 26.676436 72.025377 49.3509065 1.693295134 -0.026184 128 46 SH8672 8672 LSR1 / U2 RNA U2 1 17 28.622845 79.619258 54.1210515 1.733366226 0.009364 128 47 SH14015 14015 MT COB Exon4 30.830224 118.674927 30.830224 88.844703 59.8374635 1.776973176 -0.01561 128 48 SH19986 19986 YBL092W spliced 35.751479 104.684653 70.218066 1.846448864 -0.187791 128 49 SH15142 15142 MT tRNA Thr1 reverse complement 5' 27.166445 93.45482 27.166445 67.288375 47.22741 1.674194129 0.074151 128 50 SH21685 21685 copy of SH10240 27.628465 81.891457 54.759961 1.73846313 -0.08543 128 51 SH4098 4098 SRP RNA SRP RNA 381 393 37.24733 99.659367 68.4533485 1.835394697 -0.052597 128 52 SH4721 4721 snR4 snR4 141 157 29.599011 82.264981 55.931996 1.747660318 0.039823 128 53 SH5422 5422 snR31 snR31 176 192 33.503558 95.309716 64.406637 1.808930623 -0.050836 128 54 SH9881 9881 RUF5-1 RUF5-1 211 225 30.29868 79.946261 55.1224705 1.741328674 0.112469 128 55 SH5647 5647 snR34 snR34 156 175 27.667302 69.673313 48.6703075 1.68726409 0.075911 128 56 SH8425 8425 snoRNA cluster 5 intergenic 25.665382 94.849901 25.665382 70.184519 47.9249505 1.680561673 -0.075748 128 57 SH4966 4966 snR9 3' 30.546319 78.453322 54.4998205 1.736395072 0.14668 128 58 SH15573 15573 YBR084C-A_2_415219_414144_INTRON_3_508 intron 26.484439 100.361843 26.484439 74.877404 50.6809215 1.704844503 -0.077358 128 59 SH2836 2836 Pro7 5' flank - tRNA3 3 31.474278 89.119312 60.296795 1.780294228 0.007288 128 60 SH17826 17826 YKR057W_11_551293_551878_INTRON_25_346 3' exon 28.313774 118.347383 28.313774 91.033609 59.6736915 1.775782905 -0.167223 128 61 SH17382 17382 YIL052C_9_257061_256224_INTRON_38_509 3' exon 29.666696 123.236634 29.666696 94.569938 62.118317 1.793219681 -0.163707 128 62 SH15044 15044 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.459003 99.679415 27.459003 73.220412 50.3397075 1.701910688 0.013708 128 63 SH8471 8471 snoRNA cluster 5 3' 36.80625 139.021542 36.80625 103.215292 70.010771 1.84516486 -0.134712 128 64 SH1640 1640 Leu5 tRNA-intron/exon 66 82 232.214196 348.8589 290.536548 2.463200772 -0.266638 128 65 SH5912 5912 snR36 snR36 16 35 34.275876 103.874419 69.0751475 1.839321821 -0.206444 128 66 SH9323 9323 RUF1 RUF1 191 212 28.469788 75.596524 52.033156 1.716280168 0.051171 128 67 SH3577 3577 Tyr2 3' flank 27.140795 72.731139 49.935967 1.698413464 -0.002306 128 68 SH14685 14685 MT 21S rRNA 21S rRNA4 26.809535 96.028816 26.809535 70.219281 48.514408 1.685870736 0.00777 128 69 SH16218 16218 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 26.406035 109.33311 26.406035 83.927075 55.166555 1.741675864 -0.19528 128 70 SH1388 1388 Leu1 tRNA 11 23 48.582037 119.999487 84.290762 1.92577998 -0.200302 128 71 SH501 501 Asp2 66-72 + 3'flank 66 82 27.743531 68.74477 48.2441505 1.683444664 0.094084 128 72 SH8667 8667 LSR1 / U2 RNA 5' 45.082979 89.92917 67.5060745 1.829342854 0.316393 128 73 SH21409 21409 Ser3 spliced 27.518258 81.928701 54.7234795 1.738173703 -0.093416 128 74 SH8454 8454 snoRNA cluster 5 snR128 34.495 120.037623 34.495 86.542623 60.5188115 1.781890391 0.170038 128 75 SH15684 15684 YBR191W_2_606228_607098_INTRON_12_399 intron 31.74589 118.316469 31.74589 87.570579 59.6582345 1.775670397 0.045909 128 76 SH12796 12796 MT COX1 COX1ai1 28.996669 124.226345 28.996669 96.229676 62.6131725 1.796665709 -0.221197 128 77 SH17468 17468 YIL148W_9_68708_69528_INTRON_9_442 intron/exon 27.091349 95.3195 27.091349 69.228151 48.15975 1.682684224 0.041549 128 78 SH18017 18017 YLR306W_12_744151_744851_INTRON_4_137 5' exon 31.633336 118.633285 31.633336 87.999949 59.8166425 1.776822032 0.033588 128 79 SH2472 2472 Phe5 3' flank 31.638074 91.82372 61.730897 1.790502588 -0.032011 128 80 SH14182 14182 MT COB Exon6 27.474684 102.841964 27.474684 76.36728 51.920982 1.715342898 -0.026022 128 81 SH14589 14589 MT 21S rRNA Sce1 endonuc 27.911223 130.507647 27.911223 103.596424 65.7538235 1.817921012 -0.386372 128 82 SH15673 15673 YBR191W_2_606228_607098_INTRON_12_399 intron 32.72537 128.702874 32.72537 96.977504 64.851437 1.811919604 -0.10615 128 83 SH21637 21637 copy of SH8142 1060.976276 1207.230446 1134.103361 3.054652638 -0.286781 128 84 SH4248 4248 telomerase RNA telomerase 276 295 29.304569 69.279541 49.292055 1.692776924 0.192069 128 85 SH21089 21089 YNL012W spliced 36.137594 89.022285 62.5799395 1.796435139 0.152434 128 86 SH2662 2662 Pro4 5' flank 29.223011 74.997843 52.110427 1.716924632 0.108333 128 87 SH15200 15200 MT COX3 cox3 29.297743 105.786313 29.297743 77.48857 53.3931565 1.727485596 0.080434 128 88 SH19463 19463 CYC1 29.180567 83.248831 56.214699 1.74984989 0.001093 128 89 SH1059 1059 Gly3 tRNA 31 45 145.707262 233.603735 189.6554985 2.277965438 -0.179653 128 90 SH7424 7424 snR69 snR69 21 38 29.190199 82.892476 56.0413375 1.748508492 0.00601 128 91 SH1063 1063 Gly3 tRNA 51 63 3471.89563 2524.209561 2998.052596 3.476839248 0.10727 128 92 SH2467 2467 Phe5 3' flank 27.184118 69.065256 48.124687 1.682367918 0.050393 128 93 SH21519 21519 copy of SH3380 28.817739 69.40633 49.1120345 1.691187925 0.158052 128 94 SH21821 21821 copy of SH16001 29.906764 104.381023 67.1438935 1.827006521 -0.332525 128 95 SH11526 11526 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4516 4534 1113.73526 945.905557 1029.820409 3.012761494 0.159875 128 96 SH16723 16723 YGL033W_7_435621_436347_INTRON_56_125 exon/intron 41.649174 157.768121 41.649174 117.118947 79.3840605 1.899733309 -0.288498 128 97 SH13219 13219 MT COX1 COX1-ai4 29.023422 103.314643 29.023422 75.291221 52.1573215 1.71731528 0.091511 128 98 SH17012 17012 YGR148C_7_788173_787307_INTRON_1_392 intron 34.022076 115.942463 34.022076 82.920387 58.4712315 1.766942241 0.222998 128 99 SH5538 5538 snR33 5' 27.857683 67.932865 47.895274 1.680292662 0.113392 128 100 SH903 903 Glu3 tRNA 26 40 81.127595 141.024194 111.0758945 2.045619819 0.011369 128 101 SH9618 9618 RUF3 3' 28.278192 72.302272 50.290232 1.701483639 0.082429 128 102 SH6420 6420 snR45 5' 28.055023 83.583533 55.819278 1.746784215 -0.077039 128 103 SH10318 10318 RUF7 RUF7 201 216 32.03815 85.303731 58.6709405 1.76842305 0.098746 128 104 SH6863 6863 snR56 5' 29.285917 80.764527 55.025222 1.740561803 0.038216 129 2 SH5339 5339 snR30 snR30 546 563 35.735817 102.819134 69.2774755 1.840592053 -0.151063 129 3 SH21845 21845 copy of SH17380 27.424732 71.378621 49.4016765 1.693741687 0.035749 129 4 SH5309 5309 snR30 snR30 396 412 40.005566 106.771467 73.3885165 1.865628109 -0.13539 129 5 SH14745 14745 MT ORF11; tRNA Leu; tRNA Gln 5' 26.591825 99.853668 26.591825 74.261843 50.426834 1.702661702 -0.061644 129 6 SH17178 17178 YHR021C_8_148660_147862_INTRON_4_553 intron 30.286563 133.489107 30.286563 104.202544 67.2445535 1.827657114 -0.318264 129 7 SH18631 18631 YNL096C_14_444312_443395_INTRON_145_489 intron 28.498563 96.142129 28.498563 68.643566 48.5710645 1.686377622 0.147208 129 8 SH1188 1188 Ile1 5' flank 43.421363 104.274462 73.8479125 1.868338223 -0.017168 129 9 SH8759 8759 LSR1 / U2 RNA U2 436 453 25.337608 75.818855 50.5782315 1.70396364 -0.174599 129 10 SH21098 21098 YNL044W spliced 32.428246 82.666558 57.547402 1.760025722 0.163524 129 11 SH21871 21871 copy of SH18601 24.991567 65.364987 45.178277 1.654929664 -0.055136 129 12 SH7824 7824 snoRNA cluster1 intergenic 25.76312 87.386747 25.76312 62.623627 44.1933735 1.645357155 0.045237 129 13 SH1854 1854 Leu9 tRNA 11 25 1019.564925 1399.461568 1209.513247 3.082610629 -0.57083 129 14 SH538 538 Cys1 5' flank - tRNA8 5' flank 8 28.821352 74.010043 51.4156975 1.711095732 0.09553 129 15 SH13907 13907 MT COB Cytbi3 26.49742 99.837546 26.49742 74.340126 50.418773 1.702592272 -0.069504 129 16 SH15435 15435 YBL072C_2_89435_88518_INTRON_1_308 intron 32.759169 126.572486 32.759169 94.813317 63.786243 1.804727023 -0.059437 129 17 SH21186 21186 YOL047C spliced 29.839017 80.156209 54.997613 1.740343841 0.081039 129 18 SH1930 1930 Lys1 3' flank 27.292079 71.733103 49.512591 1.694715654 0.021657 129 19 SH2449 2449 Phe5 tRNA 16 28 44.61572 104.032401 74.3240605 1.871129428 0.010803 129 20 SH7592 7592 snR189 snR189 31 48 33.655815 70.915597 52.285706 1.718382977 0.430471 129 21 SH3847 3847 RNaseP RNaseP 201 218 27.684571 87.070603 57.377587 1.75874228 -0.143007 129 22 SH14215 14215 MT ATP9 ATP9 604.992324 1426.703801 604.992324 822.711477 713.8519005 2.85360812 -0.41915 129 23 SH8560 8560 snR19 / U1 RNA U1 296 313 29.903558 71.203106 50.553332 1.703749785 0.203694 129 24 SH10992 10992 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1846 1866 571.256527 509.356734 540.3066305 2.732640297 0.269935 129 25 SH4986 4986 snR10 5' 28.089582 77.335648 52.712615 1.721914561 0.003066 129 26 SH15936 15936 YDL115C_4_255042_253994_INTRON_1_88 intron 27.140296 117.212331 27.140296 91.072035 59.1061655 1.771632786 -0.225404 129 27 SH11750 11750 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5636 5649 42.845574 93.856175 68.3508745 1.834744075 0.186354 129 28 SH7430 7430 snR69 snR69 51 70 29.174449 79.948827 54.561638 1.7368874 0.041194 129 29 SH18019 18019 YLR306W_12_744151_744851_INTRON_4_137 exon/intron 29.592699 112.665965 29.592699 84.073266 56.8329825 1.754600448 0.014953 129 30 SH11493 11493 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4351 4368 901.377384 791.23466 846.306022 2.927527431 0.163178 129 31 SH8593 8593 snR19 / U1 RNA U1 461 473 39.479248 81.440873 60.4600605 1.781468577 0.408776 129 32 SH5092 5092 snR11 snR11 61 79 26.735104 69.933554 48.334329 1.684255694 0.006329 129 33 SH15623 15623 YBR181C_2_592732_591670_INTRON_7_358 intron 25.869498 110.998372 25.869498 86.128874 55.999186 1.748181714 -0.259886 129 34 SH10493 10493 RUF8 RUF8 391 408 28.227687 84.372446 56.3000665 1.750508908 -0.074884 129 35 SH17939 17939 YLR093C_12_327416_326514_INTRON_17_157 intron/exon 25.857408 98.402483 25.857408 73.545075 49.7012415 1.696367237 -0.106273 129 36 SH7364 7364 snR68 snR68 41 53 75.961142 123.193992 99.577567 1.998161511 0.188526 129 37 SH16340 16340 YDR500C_4_1450856_1450201_INTRON_8_396 intron 27.879805 118.738186 27.879805 91.858381 59.869093 1.777202679 -0.201849 129 38 SH16848 16848 YGL183C_7_157071_156547_INTRON_4_86 5' exon 96.624888 237.860995 96.624888 142.236107 119.4304975 2.077115241 0.187364 129 39 SH18193 18193 YML024W_13_225889_226697_INTRON_4_401 intron 31.86941 120.238531 31.86941 89.369121 60.6192655 1.78261067 0.019656 129 40 SH20310 20310 YER007C-A spliced 27.507948 82.194268 54.851108 1.739185405 -0.097362 129 41 SH7797 7797 snoRNA cluster1 snR75 31.869208 120.159921 31.869208 89.290713 60.5799605 1.782328986 0.021005 129 42 SH21036 21036 YMR125W spliced 35.140398 99.236554 67.188476 1.82729479 -0.092053 129 43 SH18425 18425 YMR142C_13_551206_550205_INTRON_5_406 5' exon 27.213974 103.94965 27.213974 77.735676 52.474825 1.719950999 -0.061768 129 44 SH20112 20112 YDL064W spliced 62.271982 125.823 94.047491 1.973347214 -0.053432 129 45 SH20283 20283 YDR471W spliced 33.496766 84.329046 58.912906 1.770210446 0.176112 129 46 SH6959 6959 snR58 3' 26.084769 73.156036 49.6204025 1.695660283 -0.084324 129 47 SH14506 14506 MT 21S rRNA 21S rRNA3 30.462659 109.633821 30.462659 80.171162 55.3169105 1.742857916 0.119826 129 48 SH21293 21293 YPL175W spliced 33.143372 89.087269 61.1153205 1.786150094 0.077003 129 49 SH2444 2444 Phe5 5' flank - tRNA8 8 31.527198 85.998859 58.7630285 1.76910417 0.064674 129 50 SH2103 2103 Met1 5' flank 27.442486 68.433121 47.9378035 1.680678131 0.077433 129 51 SH15917 15917 YDL083C_4_307788_306925_INTRON_25_456 intron 27.580289 95.243888 27.580289 68.663599 48.121944 1.682343163 0.083853 129 52 SH21701 21701 copy of SH10876 216.943162 276.01459 246.478876 2.391779705 0.031132 129 53 SH11644 11644 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5106 5119 8759.291983 5541.293484 7150.292734 3.854323822 0.066872 129 54 SH11512 11512 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4446 4461 161.832379 239.872498 200.8524385 2.302877109 -0.096491 129 55 SH3438 3438 Trp1 tRNA 21 35 51.062635 112.067391 81.565013 1.91150391 -0.01958 129 56 SH16284 16284 YDR447C_4_1355542_1354818_INTRON_4_317 intron/exon 35.378641 134.034047 35.378641 99.655406 67.5170235 1.829413288 -0.094864 129 57 SH438 438 Asp1 tRNA 11 27 166.801085 258.156993 212.479039 2.327316093 -0.181975 129 58 SH1380 1380 Leu1 5' flank 29.193504 87.020023 58.1067635 1.764226686 -0.056517 129 59 SH1621 1621 Leu5 5' flank 29.701726 74.265369 51.9835475 1.715865914 0.148775 129 60 SH2703 2703 Pro4 3' flank 27.610994 71.622774 49.616884 1.695629487 0.045507 129 61 SH15814 15814 YDL061C_4_341182_340627_INTRON_1_408 intron 27.647259 95.176829 27.647259 68.52957 48.0884145 1.682040458 0.090399 129 62 SH4395 4395 telomerase RNA telomerase 1011 1031 27.509269 75.827348 51.6683085 1.713224244 -0.016548 129 63 SH20659 20659 YIL018W spliced 30.724309 88.493183 59.608746 1.775309986 -0.014083 129 64 SH11655 11655 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5161 5177 12821.02611 8771.31659 10796.17135 4.033269769 -0.163342 129 65 SH9840 9840 RUF5-1 RUF5-1 6 27 29.767023 80.059806 54.9134145 1.739678449 0.077692 129 66 SH7271 7271 snR65 3' 29.845242 83.643552 56.744397 1.753922985 0.034254 129 67 SH3403 3403 Thr4 3' flank 29.454154 76.767375 53.1107645 1.725182553 0.099829 129 68 SH11293 11293 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3351 3367 47.492661 105.836408 76.6645345 1.884594503 0.029657 129 69 SH389 389 Asn1 26-41 26 41 28.480416 81.650232 55.065324 1.740878199 -0.025254 129 70 SH20740 20740 YJL191W spliced 28.278017 82.320879 55.299448 1.742720796 -0.046882 129 71 SH3016 3016 Ser2 tRNA 41 55 26.085606 73.87945 49.982528 1.698818218 -0.093705 129 72 SH15549 15549 YBR078W_2_393082_394818_INTRON_59_388 intron 26.130926 110.069422 26.130926 84.938496 55.534711 1.744564516 -0.227007 129 73 SH8035 8035 snoRNA cluster 2 snR55 28.335035 106.84724 28.335035 79.512205 53.92362 1.73177904 -0.00833 129 74 SH13860 13860 MT COB Cytbi2 26.066959 94.996782 26.066959 69.929823 47.998391 1.681226679 -0.04236 129 75 SH4377 4377 telomerase RNA telomerase 921 937 28.231067 74.633669 51.432368 1.71123652 0.048139 129 76 SH8756 8756 LSR1 / U2 RNA U2 421 438 30.685936 85.24805 57.966993 1.763180772 0.04204 129 77 SH15140 15140 MT tRNA Thr1 reverse complement 5' 26.473236 96.808367 26.473236 71.335131 48.9041835 1.689346012 -0.031669 129 78 SH16226 16226 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 26.363821 98.27701 26.363821 72.913189 49.638505 1.695818693 -0.060641 129 79 SH2785 2785 Pro6 tRNA 16 32 49.112893 88.671801 68.892347 1.83817098 0.417156 129 80 SH3647 3647 Val2 5' flank 29.08581 76.66904 52.877425 1.723270298 0.0774 129 81 SH1196 1196 Ile1 5' flank 27.623249 78.31303 52.9681395 1.724014719 -0.041051 129 82 SH2227 2227 Phe1 tRNA 11 25 95.621098 166.508612 131.064855 2.117486251 -0.10149 129 83 SH14914 14914 MT tRNA Tyr tRNA 30.330596 104.634485 30.330596 75.303889 52.8172425 1.722775724 0.174348 129 84 SH11412 11412 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3946 3961 87.540708 123.474639 105.5076735 2.023284047 0.333977 129 85 SH16424 16424 YER074W_5_306319_307192_INTRON_4_469 exon/intron 29.553652 110.456376 29.553652 81.902724 55.728188 1.746074922 0.041352 129 86 SH5716 5716 snR34 snR34 501 518 31.848361 92.377477 62.112919 1.793181939 -0.032445 129 87 SH10592 10592 RUF8 RUF8 886 902 31.878615 83.56376 57.7211875 1.761335257 0.123945 129 88 SH13822 13822 MT COB Cytbi2 26.965957 99.10521 26.965957 73.139253 50.052605 1.699426685 -0.020122 129 89 SH11838 11838 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6076 6093 810.719256 734.379554 772.549405 2.887926262 0.142207 129 90 SH14433 14433 MT 21S rRNA 21S rRNA3 506.437035 1053.448269 506.437035 548.011234 527.2241345 2.721995283 -0.001867 129 91 SH12667 12667 MT_15S 3' 29.053248 95.337723 29.053248 67.284475 48.1688615 1.682766382 0.203521 129 92 SH3901 3901 RNase MRP 5' 29.051409 66.608787 47.830098 1.679701271 0.213084 129 93 SH8826 8826 LSR1 / U2 RNA U2 771 791 27.278692 64.58476 45.931726 1.662112765 0.121443 129 94 SH16696 16696 YGL031C_7_438393_437938_INTRON_1_456 intron 27.220559 111.873999 27.220559 85.65344 56.4369995 1.751563916 -0.158425 129 95 SH4738 4738 snR4 3' 34.605868 83.757447 59.1816575 1.772187124 0.230232 129 96 SH6797 6797 snR50 3' 26.037922 64.276003 45.1569625 1.654724721 0.038602 129 97 SH21039 21039 YMR133W spliced 26.699969 83.856505 55.278237 1.742554184 -0.17358 129 98 SH8308 8308 snoRNA cluster4 intergenic 29.673707 107.06015 29.673707 78.386443 54.030075 1.73263557 0.092925 129 99 SH2633 2633 Pro3 3' flank 27.9817 69.494636 48.738168 1.687869201 0.100136 129 100 SH5259 5259 snR30 snR30 146 158 30.463091 87.963549 59.21332 1.772419412 -0.016224 129 101 SH9566 9566 RUF3 RUF3 216 232 30.446338 76.596595 53.5214665 1.728528005 0.164483 129 102 SH5554 5554 snR33 snR33 56 74 27.963223 75.20514 51.5841815 1.712516544 0.022541 129 103 SH16231 16231 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.584934 113.533487 29.584934 84.948553 57.2667435 1.757902487 -0.00142 129 104 SH17452 17452 YIL148W_9_68708_69528_INTRON_9_442 intron 33.302158 131.297972 33.302158 98.995814 66.148986 1.820523191 -0.133045 130 2 SH21514 21514 copy of SH3109 27.698438 85.272248 56.485343 1.75193577 -0.121168 130 3 SH19080 19080 YOR293W_15_867094_867848_INTRON_53_489 intron 27.464621 95.556467 27.464621 69.091846 48.2782335 1.683751371 0.069793 130 4 SH14085 14085 MT COB Cytbi4 27.122859 94.647741 27.122859 68.524882 47.8238705 1.679644722 0.053586 130 5 SH8385 8385 snoRNA cluster 5 5'/snR190 31.209305 103.577539 31.209305 73.368234 52.2887695 1.718408422 0.254231 130 6 SH15291 15291 MT 9S rRNA 9S 24.494485 91.670709 24.494485 68.176224 46.3353545 1.66591249 -0.13548 130 7 SH158 158 Arg2 5' flank 29.948987 96.08654 63.0177635 1.799462986 -0.175643 130 8 SH19404 19404 YPR063C_16_678315_677807_INTRON_42_127 3' exon 43.618203 131.451399 43.618203 88.833196 66.2256995 1.821026554 0.314509 130 9 SH1844 1844 Leu9 5' flank 23.129349 64.441922 43.7856355 1.641331657 -0.185423 130 10 SH2857 2857 Pro7 tRNA 91 103 48.925594 97.376743 73.1511685 1.864221268 0.22394 130 11 SH8394 8394 snoRNA cluster 5 snR190 33.156762 119.04294 33.156762 86.886178 60.02147 1.778306628 0.116245 130 12 SH18367 18367 YMR079W_13_424988_426058_INTRON_10_165 intron 25.441661 81.808584 25.441661 57.366923 41.404292 1.617045363 0.110865 130 13 SH12446 12446 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.546608 129.13675 39.546608 90.590142 65.068375 1.813369961 0.193487 130 14 SH19445 19445 CYC1 28.308183 72.283163 50.295673 1.701530624 0.084724 130 15 SH21658 21658 copy of SH8993 32.853537 79.133679 55.993608 1.748138453 0.24853 130 16 SH1714 1714 Leu6 3' flank 25.761268 61.330366 43.545817 1.638946443 0.066308 130 17 SH16104 16104 YDR064W_4_579453_580447_INTRON_22_560 5' exon 45.399185 156.423534 45.399185 112.024349 78.711767 1.896039662 -0.12381 130 18 SH8517 8517 snR19 / U1 RNA U1 81 102 27.508417 65.232288 46.3703525 1.666240397 0.128021 130 19 SH10414 10414 RUF8 5' - 15 -4 15 27.685703 90.793998 59.2398505 1.772613954 -0.19317 130 20 SH3813 3813 RNaseP RNaseP 31 47 30.218889 90.303462 60.2611755 1.780037599 -0.06761 130 21 SH8969 8969 snR17a / U3a U3a 131 147 26.363043 83.871927 55.117485 1.741289393 -0.197692 130 22 SH16671 16671 YFR032C-A_6_223758_223245_INTRON_1_331 intron 31.845951 124.261767 31.845951 93.415816 62.6308835 1.796788538 -0.053449 130 23 SH3895 3895 RNaseP 3' 28.044344 76.283099 52.1637215 1.717368568 0.013749 130 24 SH3650 3650 Val2 5' flank - tRNA8 8 28.458265 83.668575 56.06342 1.748679587 -0.051168 130 25 SH9475 9475 RUF2 RUF2 216 233 30.495228 91.375586 60.935407 1.784869716 -0.073684 130 26 SH3507 3507 Tyr1 tRNA 76 88 67.484077 156.26082 111.8724485 2.048723143 -0.371982 130 27 SH12061 12061 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7191 7206 42.913187 92.012073 67.46263 1.829063268 0.228581 130 28 SH6885 6885 snR56 snR56 56 73 29.26621 79.676875 54.4715425 1.736169674 0.050522 130 29 SH12678 12678 MT tRNA Trp 5' / tRNA 27.348278 104.484991 27.348278 78.136713 52.7424955 1.722160674 -0.057644 130 30 SH241 241 Arg3 61-72 + 3' flank 61 3' flank 62.934313 117.650952 90.2926325 1.955652315 0.084163 130 31 SH9453 9453 RUF2 RUF2 106 121 28.582388 71.476731 50.0295595 1.699226679 0.114054 130 32 SH14136 14136 MT COB intronic 26.141929 95.990816 26.141929 70.848887 48.495408 1.685700617 -0.049359 130 33 SH793 793 Glu1 5' flank 33.817533 86.553653 60.185593 1.779492544 0.148588 130 34 SH3560 3560 Tyr2 tRNA 71 83 32.20167 92.29045 62.24606 1.794111867 -0.019343 130 35 SH8459 8459 snoRNA cluster 5 snR128 38.32162 127.1261 38.32162 89.80448 64.06305 1.806607611 0.184825 130 36 SH9007 9007 snR17a / U3a U3a 321 338 29.483053 77.682212 53.5826325 1.729024047 0.089815 130 37 SH19636 19636 RNA14 2.2 36.756955 88.209159 62.483057 1.795762269 0.185592 130 38 SH12944 12944 MT COX1 COX1ai2 28.712602 115.936613 28.712602 88.224011 58.4683065 1.766920515 -0.100005 130 39 SH20595 20595 YHR039C-A spliced 34.166462 97.477548 65.822005 1.818371107 -0.07976 130 40 SH4432 4432 telomerase RNA telomerase 1196 1210 27.441103 79.423059 53.432081 1.727802089 -0.067608 130 41 SH1907 1907 Lys1 5' flank - tRNA9 9 27.209951 76.851657 52.030804 1.716260537 -0.050595 130 42 SH14342 14342 MT VAR1 includes 5’ processing site VAR1 27.061605 102.564685 27.061605 76.50308 51.7823425 1.714181693 -0.056451 130 43 SH13381 13381 MT COX1 Exon 5b 27.344771 110.480338 27.344771 84.135567 55.740169 1.746168281 -0.131945 130 44 SH18166 18166 YLR448W_12_1028848_1029762_INTRON_16_399 intron 29.688266 121.038446 29.688266 92.35018 61.019223 1.785466673 -0.125991 130 45 SH10489 10489 RUF8 RUF8 371 389 26.584727 71.229745 48.907236 1.689373119 -0.022156 130 46 SH2175 2175 Met2 tRNA 6 18 51.007755 115.011239 83.009497 1.919127782 -0.072199 130 47 SH3967 3967 RNase MRP RNaseMRP 251 270 28.011005 87.821669 57.916337 1.762801086 -0.12952 130 48 SH15278 15278 MT 9S rRNA 9S 26.275013 101.432078 26.275013 76.157065 51.216039 1.709405988 -0.108908 130 49 SH3124 3124 Ser4 tRNA 26 41 33.616268 88.093567 60.8549175 1.784295678 0.111913 130 50 SH20637 20637 YHR141C spliced 31.798384 83.830911 57.8146475 1.762037882 0.115635 130 51 SH14707 14707 MT tRNA thr2 3' 27.39697 104.560256 27.39697 78.163286 52.780128 1.722470439 -0.054633 130 52 SH14261 14261 MT VAR1 includes 5’ processing site 5' 27.269067 102.918789 27.269067 76.649722 51.9593945 1.715664081 -0.043872 130 53 SH16153 16153 YDR092W_4_629869_630598_INTRON_31_298 3' exon 34.065059 121.346515 34.065059 88.281456 61.1732575 1.786561607 0.118922 130 54 SH1124 1124 Gly4 3' flank 31.546463 72.805284 52.1758735 1.717469729 0.282189 130 55 SH4253 4253 telomerase RNA telomerase 301 319 26.798153 76.87131 51.8347315 1.714620853 -0.079899 130 56 SH16602 16602 YFL034C-A_6_64931_64242_INTRON_13_333 3' exon 26.567894 98.2935 26.567894 72.725606 49.64675 1.695890824 -0.043319 130 57 SH16972 16972 YGR034W_7_555923_556666_INTRON_20_496 intron 31.05309 115.392886 31.05309 85.339796 58.196443 1.764896441 0.056295 130 58 SH583 583 Gln1 5' flank 29.266152 82.571542 55.918847 1.747558208 0.01479 130 59 SH7780 7780 snoRNA cluster1 intergenic 27.563952 103.975837 27.563952 77.411885 52.4879185 1.72005935 -0.033512 130 60 SH9005 9005 snR17a / U3a U3a 311 323 32.533593 87.185389 59.859491 1.77713302 0.085533 130 61 SH18165 18165 YLR448W_12_1028848_1029762_INTRON_16_399 intron 37.279582 132.75585 37.279582 96.476268 66.877925 1.82528279 0.01507 130 62 SH18694 18694 YNL112W_14_413636_416278_INTRON_1274_2275 3' exon 27.585899 99.248157 27.585899 72.662258 50.1240785 1.700046401 0.02993 130 63 SH4216 4216 telomerase RNA telomerase 116 131 34.373854 84.19877 59.286312 1.772954435 0.213098 130 64 SH9200 9200 snR7 U5 RNA 3' 29.748505 85.942828 57.8456665 1.762270829 -0.012042 130 65 SH20457 20457 YGL178W spliced 27.784335 76.559215 52.171775 1.717435613 -0.007418 130 66 SH697 697 Gln3 tRNA 16 32 27.854059 80.799144 54.3266015 1.735012538 -0.056663 130 67 SH4197 4197 telomerase RNA telomerase 21 38 29.752696 88.104231 58.9284635 1.770325117 -0.050278 130 68 SH13944 13944 MT COB Cytbi3 26.827281 96.904996 26.827281 71.077715 48.952498 1.689774858 -0.002615 130 69 SH17063 17063 YGR214W_7_920570_921783_INTRON_91_545 intron 26.372308 95.296282 26.372308 69.923974 48.148141 1.682579524 -0.019852 130 70 SH5076 5076 snR11 5' 35.214284 85.76825 60.491267 1.781692681 0.205929 130 71 SH19058 19058 YOR234C_15_779404_778554_INTRON_20_546 intron 26.419889 104.767057 26.419889 79.347168 52.8835285 1.723320424 -0.138108 130 72 SH13107 13107 MT COX1 COX1ai3 26.743059 106.561607 26.743059 80.818548 53.7808035 1.730627286 -0.133597 130 73 SH517 517 Asp2 3' flank 35.901509 91.142445 63.521977 1.802924006 0.099036 130 74 SH9089 9089 snR14 / U4 RNA U4 61 82 26.380922 76.311576 51.346249 1.710508723 -0.103106 130 75 SH15610 15610 YBR119W_2_479296_480281_INTRON_9_97 3' exon 38.18348 133.324672 38.18348 96.141192 67.162336 1.827125793 0.041957 130 76 SH16064 16064 YDR005C_4_458099_456832_INTRON_7_86 5' exon 32.521202 120.917778 32.521202 89.396576 60.958889 1.785037043 0.046278 130 77 SH18991 18991 YOR122C_15_552886_552297_INTRON_14_222 5' exon 37.259169 137.465741 37.259169 101.206572 69.2328705 1.840312338 -0.084112 130 78 SH12094 12094 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7356 7383 28.141411 77.06997 52.6056905 1.721032726 0.009985 130 79 SH20863 20863 YLR093C spliced 25.746692 82.664646 54.205669 1.734044709 -0.22775 130 80 SH3336 3336 Thr3 tRNA 26 43 27.32446 93.556081 60.4402705 1.781326399 -0.257108 130 81 SH21308 21308 YPL241C spliced 27.262846 83.202575 55.2327105 1.742196356 -0.126434 130 82 SH6376 6376 snR43 snR43 121 136 30.517324 85.477717 57.9975205 1.763409427 0.030503 130 83 SH14868 14868 MT tRNA Ser2; tRNA Arg2 3' 28.290775 98.275861 28.290775 70.985086 49.6379305 1.695813667 0.100928 130 84 SH14724 14724 MT tRNA cys; tRNA his intergenic 27.977672 101.761834 27.977672 74.784162 51.380917 1.710801851 0.029134 130 85 SH1829 1829 Leu8 3' flank 29.99543 80.566181 55.2808055 1.742574363 0.085782 130 86 SH325 325 Arg5 5' flank 27.485758 79.682469 53.5841135 1.72903605 -0.067809 130 87 SH14006 14006 MT COB intronic 27.331261 95.013458 27.331261 68.682197 48.006729 1.681302116 0.066126 130 88 SH19394 19394 YPR043W_16_654161_654842_INTRON_3_405 3' exon 59.55904 177.194346 59.55904 118.635306 89.097173 1.949863924 0.013868 130 89 SH18361 18361 YMR033W_13_337787_339276_INTRON_31_116 3' exon 31.806658 116.621623 31.806658 85.814965 58.8108115 1.769457172 0.079797 130 90 SH19752 19752 Negative Control 30.15665 88.2749 59.215775 1.772437418 -0.035222 130 91 SH4196 4196 telomerase RNA telomerase 16 32 27.995213 81.202121 54.598667 1.73718204 -0.05212 130 92 SH18217 18217 YML025C_13_225365_224406_INTRON_28_126 intron/exon 28.051342 105.552644 28.051342 78.501302 53.276322 1.726534235 -0.014479 130 93 SH19296 19296 YPL175W_16_218629_220087_INTRON_18_117 3' exon 31.918024 116.595669 31.918024 85.677645 58.7978345 1.769361331 0.086952 130 94 SH8469 8469 snoRNA cluster 5 3' 28.567594 92.928855 28.567594 65.361261 46.9644275 1.671769033 0.198884 130 95 SH20077 20077 YCR031C spliced 33.573341 121.788544 77.6809425 1.890314486 -0.551655 130 96 SH8021 8021 snoRNA cluster 2 snR55 79.906488 226.850247 79.906488 147.943759 113.9251235 2.056619508 -0.091785 130 97 SH16987 16987 YGR118W_7_726968_727725_INTRON_66_385 intron 30.258724 130.592353 30.258724 101.333629 65.7961765 1.818200657 -0.262357 130 98 SH17055 17055 YGR214W_7_920570_921783_INTRON_91_545 intron 26.990428 109.048753 26.990428 83.058325 55.0243765 1.74055513 -0.143618 130 99 SH2490 2490 Pro1 5' flank 57.52991 114.870592 86.200251 1.93550853 0.043425 130 100 SH694 694 Gln3 tRNA 1 17 224.151944 358.91981 291.535877 2.464692008 -0.357341 130 101 SH3572 3572 Tyr2 3' flank 32.161091 94.993302 63.5771965 1.803301373 -0.079037 130 102 SH14121 14121 MT COB intronic 27.569455 107.677919 27.569455 81.108464 54.3389595 1.735111318 -0.07984 130 103 SH6324 6324 snR42 3' 29.091284 79.299161 54.1952225 1.733961004 0.043984 130 104 SH21927 21927 copy of SH20402 30.296446 83.332482 56.814464 1.754458914 0.060101 131 2 SH13922 13922 MT COB Cytbi3 25.054715 95.971575 25.054715 71.91686 48.4857875 1.685614454 -0.145521 131 3 SH684 684 Gln3 5' flank 29.284482 88.052592 58.668537 1.768405258 -0.070601 131 4 SH8524 8524 snR19 / U1 RNA U1 116 132 67.940135 123.081993 95.511064 1.980053683 0.074745 131 5 SH16043 16043 YDL191W_4_117665_118518_INTRON_4_494 intron 29.069157 111.891304 29.069157 83.822147 56.445652 1.751630494 -0.012986 131 6 SH19048 19048 YOR234C_15_779404_778554_INTRON_20_546 intron 68.228431 195.555792 68.228431 128.327361 98.277896 1.99245585 0.001592 131 7 SH10717 10717 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 471 488 29.814772 76.142703 52.9787375 1.724101605 0.130938 131 8 SH19805 19805 Negative Control 28.117568 92.056812 60.08719 1.778781895 -0.193821 131 9 SH19486 19486 YPT1 302.238644 263.113255 282.6759495 2.45128886 0.524025 131 10 SH4242 4242 telomerase RNA telomerase 246 262 32.49025 111.132103 71.8111765 1.856192042 -0.389767 131 11 SH2387 2387 Phe4 5' flank - tRNA2 2 26.98636 84.400598 55.693479 1.745804348 -0.159953 131 12 SH1458 1458 Leu2 tRNA-intron/exon 61 76 53.777232 112.186739 82.9819855 1.918983822 0.0252 131 13 SH13377 13377 MT COX1 intronic 27.799784 119.235367 27.799784 92.435583 60.1176835 1.779002238 -0.215386 131 14 SH20580 20580 YHR016C spliced 134.784841 158.953198 146.8690195 2.166930196 0.378528 131 15 SH6141 6141 snR39B snR39B 46 62 30.355669 113.35062 71.8531445 1.856445779 -0.487194 131 16 SH15121 15121 MT tRNA Phe 5' 28.074992 124.319798 28.074992 97.244806 62.659899 1.796989691 -0.280663 131 17 SH9071 9071 snR14 / U4 RNA 5' 30.270373 67.437421 48.853897 1.688899212 0.280375 131 18 SH13402 13402 MT COX1 intronic 142.079114 304.531891 142.079114 163.452777 152.7659455 2.184026552 0.393717 131 19 SH15966 15966 YDL130W_4_229906_230527_INTRON_115_415 intron 28.507397 111.894649 28.507397 84.387252 56.4473245 1.751643362 -0.056482 131 20 SH3942 3942 RNase MRP RNaseMRP 126 150 26.538927 65.673714 46.1063205 1.663760465 0.052452 131 21 SH3393 3393 Thr4 tRNA 51 67 36.24817 97.873225 67.0606975 1.826468066 -0.037667 131 22 SH3928 3928 RNase MRP RNaseMRP 56 75 27.628918 67.612809 47.6208635 1.677797266 0.102044 131 23 SH15555 15555 YBR082C_2_407127_406586_INTRON_48_142 exon/intron 28.17236 110.385433 28.17236 83.213073 55.6927165 1.745798402 -0.064728 131 24 SH4732 4732 snR4 3' 29.539886 73.20364 51.371763 1.71072447 0.152897 131 25 SH18577 18577 YNL044W_14_545264_545873_INTRON_25_103 intron 28.057952 115.733335 28.057952 88.675383 58.3666675 1.766164898 -0.138769 131 26 SH5602 5602 snR34 5' 29.920754 72.937266 51.42901 1.711208164 0.180685 131 27 SH15264 15264 MT 9S rRNA 9S 27.322424 98.418528 27.322424 72.096104 49.709264 1.696437333 0.018954 131 28 SH8797 8797 LSR1 / U2 RNA U2 626 643 29.875587 81.330009 55.602798 1.745096646 0.068791 131 29 SH10204 10204 RUF6 RUF6 866 890 27.719372 83.721513 55.7204425 1.746014557 -0.101369 131 30 SH6945 6945 snR58 86-96 + 3' 86 27.449519 79.02088 53.2351995 1.726198886 -0.061948 131 31 SH5953 5953 snR36 snR36 221 237 41.25105 98.546472 69.898761 1.844469478 0.054566 131 32 SH842 842 Glu2 5' flank 29.077373 83.767932 56.4226525 1.751453499 -0.011806 131 33 SH11865 11865 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6211 6226 27.438543 73.111447 50.274995 1.701352036 0.013701 131 34 SH997 997 Gly2 5' flank 29.914666 83.696261 56.8054635 1.754390108 0.036389 131 35 SH4849 4849 snR8 snR8 26 42 31.373943 78.397237 54.88559 1.739458337 0.197766 131 36 SH4181 4181 telomerase RNA 5' 27.135493 80.040083 53.587788 1.729065831 -0.096458 131 37 SH6486 6486 snR46 5' 27.898227 76.648796 52.2735115 1.718281675 -0.000881 131 38 SH14260 14260 MT VAR1 includes 5’ processing site 5' 26.640413 96.134377 26.640413 70.493964 48.5671885 1.686342963 -0.008163 131 39 SH2663 2663 Pro4 5' flank 31.988729 88.906247 60.447488 1.781378258 0.032691 131 40 SH3055 3055 Ser3 5' flank 29.847534 75.464214 52.655874 1.721446826 0.141968 131 41 SH8030 8030 snoRNA cluster 2 snR55 29.519162 114.939664 29.519162 86.420502 57.969832 1.763202042 -0.030975 131 42 SH18201 18201 YML024W_13_225889_226697_INTRON_4_401 intron 48.412148 142.305757 48.412148 94.893609 71.6528785 1.855233642 0.267291 131 43 SH21866 21866 copy of SH19501 27.408703 84.198013 55.803358 1.746660334 -0.128288 131 44 SH11219 11219 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2981 3004 27.585093 71.455639 49.520366 1.694783846 0.045942 131 45 SH3304 3304 Thr2 3' flank 29.209434 85.889776 57.549605 1.760042347 -0.035563 131 46 SH9330 9330 RUF1 RUF1 226 242 270.453099 438.291703 354.372401 2.549459891 -0.443208 131 47 SH12042 12042 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7096 7112 625.882102 733.542944 679.712523 2.832325271 -0.193347 131 48 SH12080 12080 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7286 7304 28.655224 66.939682 47.797453 1.679404755 0.181885 131 49 SH1139 1139 His1 5' flank 28.908875 92.241536 60.5752055 1.782294896 -0.159776 131 50 SH11799 11799 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5881 5896 13944.74188 11565.54463 12755.14326 4.105685341 -0.491058 131 51 SH15878 15878 YDL082W_4_308423_309387_INTRON_5_369 intron 29.390358 115.710187 29.390358 87.319829 58.3550935 1.766078769 -0.052843 131 52 SH943 943 Gly1 5' flank 31.930014 78.06498 54.997497 1.740342925 0.231402 131 53 SH3321 3321 Thr3 5' flank 29.654737 88.173458 58.9140975 1.770219229 -0.055907 131 54 SH21435 21435 telomeric; WTP_217 59.512456 105.419451 82.4659535 1.916274685 0.24184 131 55 SH19995 19995 YBR048W spliced 31.879449 90.820699 61.350074 1.787815091 -0.004847 131 56 SH12063 12063 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7201 7219 26.685813 77.281691 51.983752 1.715867622 -0.093098 131 57 SH3281 3281 Thr2 tRNA 6 22 47.283679 106.476051 76.879865 1.885812612 0.013714 131 58 SH17726 17726 YKL156W_11_158616_159214_INTRON_4_353 intron 29.183718 122.805001 29.183718 94.621283 61.9025005 1.791708192 -0.186516 131 59 SH4403 4403 telomerase RNA telomerase 1051 1068 27.667413 75.595633 51.631523 1.712914936 -0.002683 131 60 SH1250 1250 Ile2 5' flank 31.637295 88.54221 60.0897525 1.778800415 0.024253 131 61 SH13486 13486 MT COX1 intronic 28.053993 107.351335 28.053993 80.297342 54.1756675 1.733804271 -0.03695 131 62 SH17740 17740 YKL156W_11_158616_159214_INTRON_4_353 intron 27.807041 105.739138 27.807041 78.932097 53.369569 1.727293696 -0.03644 131 63 SH15492 15492 YBL092W_2_45639_46364_INTRON_1_333 intron 32.266538 132.041604 32.266538 100.775066 66.520802 1.822957477 -0.19622 131 64 SH16183 16183 YDR367W_4_1212837_1213603_INTRON_31_131 exon/intron 30.064198 104.670369 30.064198 75.606171 52.8351845 1.722923228 0.153715 131 65 SH16694 16694 YGL031C_7_438393_437938_INTRON_1_456 5' exon 148.167802 348.862265 148.167802 201.694463 174.9311325 2.242867108 0.087828 131 66 SH16467 16467 YER093C-A_5_348396_347908_INTRON_125_199 3' exon 30.675601 114.458601 30.675601 84.783 57.7293005 1.761396295 0.050051 131 67 SH4154 4154 SRP RNA 661-675 + 3' 661 32.610338 83.003005 57.8066715 1.761977963 0.164735 131 68 SH1968 1968 Lys2 tRNA 41 57 4974.582138 8545.276708 6759.929423 3.829942162 -1.355659 131 69 SH8081 8081 snoRNA cluster 2 3' 28.795775 103.264706 28.795775 75.468931 52.132353 1.717107327 0.074314 131 70 SH21288 21288 YPL143W spliced 35.118369 89.975927 62.547148 1.796207512 0.106343 131 71 SH11082 11082 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2296 2313 6425.780712 5693.423491 6059.602102 3.782444108 -0.379441 131 72 SH9960 9960 RUF5-1 RUF5-1 606 623 29.077967 83.063102 56.0705345 1.748734696 -0.003308 131 73 SH18127 18127 YLR388W_12_898158_898821_INTRON_1_488 intron 29.253962 113.05416 29.253962 84.800198 57.02708 1.756081135 -0.013774 131 74 SH19305 19305 YPL198W_16_173151_174701_INTRON_12_420 intron 26.565747 105.037254 26.565747 79.471507 53.018627 1.724428477 -0.129302 131 75 SH18314 18314 YML073C_13_124172_123227_INTRON_16_430 3' exon 34.983964 115.516101 34.983964 81.532137 58.2580505 1.765355948 0.286432 131 76 SH9280 9280 RUF1 5' 30.442874 89.307487 59.8751805 1.777246836 -0.040569 131 77 SH3772 3772 Val4 3' flank 26.147056 73.884594 50.015825 1.699107437 -0.08924 131 78 SH15409 15409 YBL059C-A_2_110500_110086_INTRON_35_119 intron 28.060215 91.458696 28.060215 64.398481 46.229348 1.664917768 0.178613 131 79 SH4385 4385 telomerase RNA telomerase 961 977 32.038072 86.592664 59.315368 1.773167229 0.075543 131 80 SH10143 10143 RUF6 RUF6 561 578 50.718256 104.871787 77.7950215 1.890951805 0.106586 131 81 SH5320 5320 snR30 snR30 451 468 26.999933 80.594213 53.797073 1.730758647 -0.112802 131 82 SH18508 18508 YMR194W_13_651144_651909_INTRON_17_479 3' exon 28.003953 100.030067 28.003953 73.026114 50.5150335 1.703420645 0.054103 131 83 SH6943 6943 snR58 snR58 76 93 28.331853 71.546903 49.939378 1.698443129 0.096158 131 84 SH2493 2493 Pro1 5' flank 32.918858 88.681648 60.800253 1.783905386 0.074966 131 85 SH8476 8476 snoRNA cluster 5 3' 30.138436 102.441856 30.138436 73.30342 51.720928 1.713666309 0.18933 131 86 SH11726 11726 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5516 5529 34.68678 81.954057 58.3204185 1.765820632 0.267029 131 87 SH7448 7448 snR69 3' 29.707778 77.80959 53.758684 1.730448629 0.102482 131 88 SH15361 15361 YBL026W_2_170585_171000_INTRON_55_182 3' exon 31.410864 113.111301 31.410864 82.700437 57.0556505 1.756298661 0.120227 131 89 SH14560 14560 MT 21S rRNA 21S rRNA3 30.367904 108.267758 30.367904 78.899854 54.633879 1.737462036 0.12996 131 90 SH21858 21858 copy of SH17803 36.069792 88.421548 62.24567 1.794109146 0.164578 131 91 SH9509 9509 RUF3 5' 29.13237 101.496006 65.314188 1.815007532 -0.298032 131 92 SH12362 12362 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.067791 147.927548 29.067791 119.859757 74.463774 1.871945044 -0.637634 131 93 SH10779 10779 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 781 801 28.669818 107.450681 68.0602495 1.832893537 -0.427485 131 94 SH2879 2879 Pro8 5' flank 27.659321 91.859512 59.7594165 1.776406348 -0.212495 131 95 SH6979 6979 snR60 5' 32.534995 96.303513 64.419254 1.809015691 -0.096974 131 96 SH10864 10864 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1206 1223 38.420643 98.031328 68.2259855 1.833949818 0.006894 131 97 SH20624 20624 YHR101C spliced 29.338196 73.271247 51.3047215 1.710157334 0.139064 131 98 SH15551 15551 YBR078W_2_393082_394818_INTRON_59_388 intron/exon 28.332617 91.473618 28.332617 64.141001 46.236809 1.664987854 0.201063 131 99 SH4195 4195 telomerase RNA telomerase 11 27 88.854333 122.283472 105.5689025 2.023536007 0.367518 131 100 SH4226 4226 telomerase RNA telomerase 166 182 28.937601 68.698781 48.818191 1.688581682 0.175878 131 101 SH2775 2775 Pro6 5' flank 29.039404 77.789949 53.4146765 1.727660602 0.05986 131 102 SH13398 13398 MT COX1 intronic 26.77254 92.283452 26.77254 66.510912 46.641726 1.668774613 0.057175 131 103 SH948 948 Gly1 5' flank - tRNA7 7 28.209118 91.087891 59.6485045 1.77559956 -0.173102 131 104 SH5367 5367 snR31 5' 35.668294 89.507651 62.5879725 1.796490883 0.13022 132 2 SH4564 4564 U3b (snR17b) U3b 376 388 38.392899 97.648626 68.0207625 1.832641496 0.014367 132 3 SH4383 4383 telomerase RNA telomerase 951 968 33.191356 97.798128 65.494742 1.816206436 -0.111176 132 4 SH3203 3203 Ser5 3' flank 37.268613 104.318373 70.793493 1.849993341 -0.146368 132 5 SH18265 18265 YML056C_13_164176_162194_INTRON_461_868 intron 30.987728 105.526687 30.987728 75.538959 53.2633435 1.726428425 0.211613 132 6 SH8529 8529 snR19 / U1 RNA U1 141 156 29.344479 96.774909 63.059694 1.799751859 -0.213978 132 7 SH7101 7101 snR63 snR63 11 30 27.291809 75.158395 51.225102 1.709482832 -0.023122 132 8 SH519 519 Asp2 3' flank 26.925973 84.320852 55.6234125 1.745257629 -0.163228 132 9 SH17580 17580 YJL191W_10_73786_74610_INTRON_11_418 intron 30.985936 118.97958 30.985936 88.993644 59.98979 1.778077342 -0.011458 132 10 SH15609 15609 YBR119W_2_479296_480281_INTRON_9_97 intron/exon 27.090857 102.843864 27.090857 76.753007 51.921932 1.715350844 -0.057574 132 11 SH19372 19372 YPR043W_16_654161_654842_INTRON_3_405 5' exon 523.700682 944.485498 523.700682 421.784816 472.742749 2.674624876 0.461371 132 12 SH18174 18174 YLR448W_12_1028848_1029762_INTRON_16_399 intron 28.003359 123.357434 28.003359 96.354075 62.178717 1.793641757 -0.269848 132 13 SH18904 18904 YOL120C_15_94401_93394_INTRON_113_559 intron 34.644507 124.131703 34.644507 90.487196 62.5658515 1.79633736 0.083225 132 14 SH308 308 Arg4 3' flank 32.448178 104.576948 68.512563 1.835770214 -0.266622 132 15 SH12120 12120 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7486 7506 26.018609 68.736613 47.377611 1.675573158 -0.029421 132 16 SH20394 20394 YFL039C spliced 37.609675 78.18885 57.8992625 1.762673032 0.448068 132 17 SH13931 13931 MT COB Cytbi3 26.45617 105.123105 26.45617 79.666935 53.0615525 1.724779953 -0.139549 132 18 SH13701 13701 MT tRNAGlu (and 5' processing site for COB) 5' 26.623004 91.550381 26.623004 65.927377 46.2751905 1.665348215 0.054844 132 19 SH19981 19981 YBL091C-A spliced 33.556401 89.826155 61.691278 1.790223767 0.070839 132 20 SH498 498 Asp2 tRNA 51 65 29.057862 76.170399 52.6141305 1.721102398 0.082122 132 21 SH10729 10729 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 531 547 31.745176 85.130432 58.437804 1.766693887 0.089597 132 22 SH14963 14963 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 27.525598 102.84912 27.525598 76.323522 51.92456 1.715372825 -0.02196 132 23 SH4175 4175 telomerase RNA 5' 30.094522 87.11361 58.604066 1.767927749 -0.017496 132 24 SH3867 3867 RNaseP RNaseP 301 317 30.101807 99.138342 64.6200745 1.810367454 -0.222326 132 25 SH13991 13991 MT COB intronic 30.10254 99.390482 30.10254 70.287942 50.195241 1.700662544 0.229142 132 26 SH18625 18625 YNL096C_14_444312_443395_INTRON_145_489 intron 30.146037 121.652476 30.146037 92.506439 61.326238 1.787646324 -0.108126 132 27 SH12793 12793 MT COX1 COX1ai1 27.763512 112.453971 27.763512 85.690459 56.7269855 1.753789706 -0.121645 132 28 SH20137 20137 YDL083C spliced 28.891667 80.112997 54.502332 1.736415085 0.020788 132 29 SH21376 21376 Leu8_9 spliced 30.04922 72.933142 51.491181 1.711732853 0.188814 132 30 SH5295 5295 snR30 snR30 326 338 64.377953 113.52566 88.9518065 1.949154772 0.174232 132 31 SH20587 20587 YHR021C spliced 27.618077 78.776061 53.197069 1.725887705 -0.047306 132 32 SH8312 8312 snoRNA cluster4 intergenic 27.403939 94.440719 27.403939 68.03678 47.7203595 1.678703707 0.0803 132 33 SH73 73 Ala2 1-13 1 13 713.259945 792.198697 752.729321 2.876638833 -0.144738 132 34 SH21297 21297 YPL198W spliced 30.394307 100.502924 65.4486155 1.815900464 -0.24182 132 35 SH11948 11948 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6626 6641 31.703206 93.470178 62.586692 1.796481998 -0.05847 132 36 SH7682 7682 snoRNA cluster1 intergenic 40.252652 143.053968 40.252652 103.801316 72.026984 1.85749523 -0.072747 132 37 SH15475 15475 YBL091C-A_2_46858_46559_INTRON_35_122 intron 27.845373 110.276687 27.845373 83.431314 55.6383435 1.745374191 -0.089347 132 38 SH6259 6259 snR42 snR42 76 94 26.58601 73.016561 49.8012855 1.697240553 -0.045838 132 39 SH12834 12834 MT COX1 COX1ai1 27.306179 112.464318 27.306179 86.158139 56.732159 1.753829311 -0.15839 132 40 SH6682 6682 snR49 5' 27.471384 82.761009 55.1161965 1.74127924 -0.106748 132 41 SH19432 19432 YPR132W_16_794960_795762_INTRON_66_430 intron 27.109842 94.113508 27.109842 68.003666 47.556754 1.677212204 0.059988 132 42 SH12165 12165 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7711 7728 83.808843 145.587081 114.697962 2.059555701 -0.011096 132 43 SH20793 20793 YKL156W spliced 28.557731 83.165939 55.861835 1.747115198 -0.038561 132 44 SH14802 14802 "MT tRNAs (Lys, Arg1, Gly)" intergenic 27.684509 108.166005 27.684509 81.481496 54.5830025 1.737057422 -0.076587 132 45 SH9508 9508 RUF3 5' 27.225411 87.224934 57.2251725 1.75758711 -0.176292 132 46 SH8747 8747 LSR1 / U2 RNA U2 376 390 35.714223 93.653332 64.6837775 1.810795375 0.03938 132 47 SH2719 2719 Pro5 5' flank 30.900623 93.936058 62.4183405 1.795312218 -0.098761 132 48 SH18310 18310 YML073C_13_124172_123227_INTRON_16_430 intron 28.877886 107.159403 28.877886 79.281517 54.0797015 1.733034286 0.030335 132 49 SH19290 19290 YPL175W_16_218629_220087_INTRON_18_117 intron 31.258275 118.673143 31.258275 88.414868 59.8365715 1.776966701 0.010348 132 50 SH17863 17863 YLL050C_12_40413_39803_INTRON_15_193 intron 33.556008 114.871238 33.556008 82.31523 57.935619 1.762945651 0.215868 132 51 SH6773 6773 snR50 snR50 41 58 30.308389 89.904971 60.10668 1.77892274 -0.05681 132 52 SH7762 7762 snoRNA cluster1 snR76 29.520159 111.014018 29.520159 82.493859 56.007009 1.74824238 0.032015 132 53 SH12646 12646 MT_15S MT_15S 29.877831 102.041436 29.877831 73.163605 51.520718 1.711981907 0.174878 132 54 SH9598 9598 RUF3 RUF3 376 393 27.592884 78.070978 52.831931 1.722896484 -0.040024 132 55 SH13874 13874 MT COB intronic 27.176078 105.158716 27.176078 78.982638 53.079358 1.724925661 -0.080326 132 56 SH1047 1047 Gly3 5' flank 26.520713 73.555067 50.03789 1.699298988 -0.057625 132 57 SH13458 13458 MT COX1 intronic 26.244058 92.60003 26.244058 67.355972 46.800015 1.670245992 0.006665 132 58 SH11391 11391 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3841 3859 3590.186848 3386.258034 3488.222441 3.542604172 -0.314297 132 59 SH7934 7934 snoRNA cluster1 snR72/3' 30.160697 118.151798 30.160697 88.991101 59.575899 1.775070605 -0.047543 132 60 SH21775 21775 copy of SH14039 28.392231 89.090455 58.741343 1.768943872 -0.130142 132 61 SH12961 12961 MT COX1 COX1ai2 28.4068 111.42828 28.4068 84.02148 56.21414 1.749845571 -0.058793 132 62 SH6109 6109 snR37 3' 30.505205 86.289217 58.397211 1.766392106 0.015354 132 63 SH5856 5856 snR35 snR35 466 485 30.302726 83.67541 56.989068 1.755791555 0.054025 132 64 SH9433 9433 RUF2 RUF2 6 22 35.345983 91.363692 63.3548375 1.801779781 0.080784 132 65 SH3082 3082 Ser3 3' flank 28.473886 77.10471 52.789298 1.722545887 0.031664 132 66 SH19409 19409 YPR098C_16_729525_728944_INTRON_48_143 intron 26.080759 104.036498 26.080759 78.955739 52.518249 1.720310238 -0.157829 132 67 SH16724 16724 YGL033W_7_435621_436347_INTRON_56_125 intron 28.053209 100.668708 28.053209 73.615499 50.834354 1.706157309 0.049773 132 68 SH16983 16983 YGR118W_7_726968_727725_INTRON_66_385 5' exon 29.722663 115.297694 29.722663 86.575031 58.148847 1.764541108 -0.024543 132 69 SH15839 15839 YDL075W_4_322225_322987_INTRON_58_478 intron 28.899481 115.842135 28.899481 87.942654 58.4210675 1.766569488 -0.086381 132 70 SH4877 4877 snR8 snR8 166 178 28.25984 86.392831 57.3263355 1.758354181 -0.096432 132 71 SH8167 8167 snoRNA cluster 3; snR70 44.306467 140.350309 44.306467 97.043842 70.6751545 1.849266767 0.145888 132 72 SH6217 6217 snR40 3' 28.827246 75.73722 52.282233 1.718354128 0.072819 132 73 SH575 575 Gln1 5' flank 26.747077 87.822475 57.284776 1.758039219 -0.216525 132 74 SH6674 6674 snR48 3' 28.659377 86.903913 57.781645 1.761789902 -0.079166 132 75 SH10093 10093 RUF6 RUF6 311 330 28.328885 71.757703 50.043294 1.699345889 0.093133 132 76 SH16660 16660 YFR032C-A_6_223758_223245_INTRON_1_331 intron 28.435211 119.39316 28.435211 91.957949 60.19658 1.779571818 -0.177124 132 77 SH15076 15076 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.371338 106.608802 26.371338 81.237464 53.804401 1.730817801 -0.165146 132 78 SH7329 7329 snR66 3' 30.599742 86.188321 58.3940315 1.76636846 0.021306 132 79 SH5488 5488 snR32 snR32 101 117 43.842271 114.121168 78.9817195 1.897526584 -0.191922 132 80 SH13572 13572 MT COX1 Exon 6 26.258141 92.768391 26.258141 67.51025 46.8841955 1.671026468 0.005502 132 81 SH15674 15674 YBR191W_2_606228_607098_INTRON_12_399 intron 29.44459 118.747873 29.44459 90.303283 59.8739365 1.777237812 -0.102348 132 82 SH17256 17256 YHR101C_8_315970_314876_INTRON_111_197 5' exon 32.715922 127.755306 32.715922 96.039384 64.377653 1.80873514 -0.086657 132 83 SH15778 15778 YDL012C_4_431513_431104_INTRON_46_131 intron 28.188829 103.93424 28.188829 76.745411 52.46712 1.719887226 0.017382 132 84 SH2957 2957 Ser1 tRNA 16 32 67.061125 127.136244 97.0986845 1.987213346 0.000876 132 85 SH3990 3990 RNase MRP 3' 27.618724 84.502448 56.060586 1.748657633 -0.117519 132 86 SH14822 14822 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly 27.506874 113.388444 27.506874 86.88157 57.194222 1.757352157 -0.152964 132 87 SH3004 3004 Ser2 5' flank - tRNA2 2 27.403358 75.113963 51.2586605 1.709767253 -0.014699 132 88 SH12914 12914 MT COX1 COX1ai2 31.640569 120.959595 31.640569 90.319026 60.9797975 1.785185978 -0.006345 132 89 SH17968 17968 YLR185W_12_522665_523290_INTRON_8_366 intron 28.416543 109.345472 28.416543 81.928929 55.172736 1.741724521 -0.032896 132 90 SH13542 13542 MT COX1 intronic 27.303487 99.591334 27.303487 73.287847 50.295667 1.701530572 0.001886 132 91 SH20466 20466 YGL183C spliced 47.968548 94.962475 71.4655115 1.854096506 0.25793 132 92 SH14527 14527 MT 21S rRNA 21S rRNA3 26.156662 86.843019 26.156662 61.686357 43.9215095 1.642677258 0.088897 132 93 SH6665 6665 snR48 3' 38.118115 128.425684 83.2718995 1.920498471 -0.551358 132 94 SH9585 9585 RUF3 RUF3 311 332 24.866774 64.725467 44.7961205 1.651240404 -0.054501 132 95 SH21315 21315 YPL249C-A spliced 39.871541 95.503857 67.687699 1.830509751 0.091268 132 96 SH837 837 Glu2 5' flank 26.009149 107.648931 66.82904 1.824965223 -0.5402 132 97 SH3655 3655 Val2 tRNA 16 31 37.137071 99.4753 68.3061855 1.834460033 -0.051223 132 98 SH21464 21464 copy of SH1000 30.064831 92.321993 61.193412 1.786704669 -0.108649 132 99 SH8355 8355 snoRNA cluster4 3' 28.403 106.033792 28.403 78.630792 53.516896 1.728490916 0.007344 132 100 SH7127 7127 snR63 snR63 141 153 41.186002 94.438614 67.812308 1.831308526 0.141091 132 101 SH15257 15257 MT 9S rRNA 5' 25.010314 94.964796 25.010314 70.954482 47.982398 1.681081949 -0.136009 132 102 SH5349 5349 snR30 596-601+3' 596 31.900581 103.044594 67.4725875 1.829127365 -0.251194 132 103 SH21231 21231 YOR234C spliced 27.124302 84.273966 55.699134 1.745848443 -0.148843 132 104 SH1419 1419 Leu1 3' flank 34.400172 83.120934 58.760553 1.769085874 0.234054 133 2 SH12545 12545 MT_ORF6 + ORF7 (hypothetical) 3' 26.840843 92.131493 26.840843 66.29065 46.5657465 1.66806657 0.065265 133 3 SH2866 2866 Pro7 3' flank 26.798595 70.653135 48.725865 1.687759558 0.001074 133 4 SH20760 20760 YJR094W-A spliced 82.844274 150.164421 116.5043475 2.066342132 -0.079041 133 5 SH2995 2995 Ser2 5' flank 31.062769 81.029195 56.045982 1.748544483 0.136894 133 6 SH2656 2656 Pro4 5' flank 29.457727 79.555273 54.5065 1.736448296 0.064342 133 7 SH5506 5506 snR32 3' 27.575607 67.852393 47.714 1.678645826 0.09493 133 8 SH3178 3178 Ser5 tRNA 11 25 1109.506417 1653.118262 1381.31234 3.140291891 -0.719982 133 9 SH20410 20410 YFR032C-A spliced 40.397536 102.814901 71.6062185 1.854950739 -0.050096 133 10 SH14820 14820 "MT tRNAs (Lys, Arg1, Gly)" intergenic 25.507054 89.683332 25.507054 65.176278 45.341666 1.656497473 -0.014036 133 11 SH1680 1680 Leu6 5' flank 28.346471 71.120184 49.7333275 1.696647517 0.102891 133 12 SH3814 3814 RNaseP RNaseP 36 52 30.801615 80.240121 55.520868 1.744456247 0.139814 133 13 SH16634 16634 YFR024C-A_6_203420_201947_INTRON_48_165 5' exon 30.636625 117.124809 30.636625 87.488184 59.0624045 1.771311124 -0.000239 133 14 SH17418 17418 YIL111W_9_155219_155762_INTRON_2_89 5' exon 33.014946 126.200349 33.014946 94.185403 63.6001745 1.803458307 -0.039296 133 15 SH13376 13376 MT COX1 intronic 28.740958 116.095851 28.740958 88.354893 58.5479255 1.767511512 -0.100977 133 16 SH17494 17494 YJL041W_10_365480_368069_INTRON_2_119 intron 31.35858 101.806455 31.35858 71.447875 51.4032275 1.710990388 0.289776 133 17 SH13629 13629 MT ATP6 ATP6 29.259861 96.67922 29.259861 68.419359 48.83961 1.688772187 0.201117 133 18 SH18763 18763 YNL162W_14_331319_332151_INTRON_5_516 3' exon 119.144046 300.203771 119.144046 182.059725 150.6018855 2.177830409 0.001608 133 19 SH12057 12057 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7171 7188 28.867398 88.700431 58.7839145 1.769258503 -0.10114 133 20 SH2014 2014 Lys3 tRNA 16 30 31.095715 86.310316 58.7030155 1.768660411 0.040637 133 21 SH10368 10368 RUF7 RUF7 451 467 26.776244 88.689106 57.732675 1.761421681 -0.224303 133 22 SH6450 6450 snR45 snR45 96 108 29.245678 84.054314 56.649996 1.753199884 -0.004349 133 23 SH16213 16213 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.133 99.702621 29.133 71.569621 50.3513105 1.702010778 0.149366 133 24 SH13986 13986 MT COB intronic 10505.66817 17153.39385 10505.66817 6648.72568 8577.196925 3.933345381 0.015359 133 25 SH5314 5314 snR30 snR30 421 438 31.769911 71.041492 51.4057015 1.71101129 0.320042 133 26 SH11089 11089 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2331 2346 55.527162 112.320169 83.9236655 1.923884444 0.053283 133 27 SH17516 17516 YJL136C_10_156971_156248_INTRON_25_484 intron 28.652958 103.532386 28.652958 75.879428 52.266193 1.718220868 0.059514 133 28 SH18777 18777 YNL265C_14_145280_144279_INTRON_28_132 intron 27.048735 108.639574 27.048735 82.590839 54.819787 1.738937344 -0.133901 133 29 SH8991 8991 snR17a / U3a U3a 241 257 31.483628 80.264067 55.8738475 1.747208578 0.169583 133 30 SH4981 4981 snR10 5' 27.243026 71.291299 49.2671625 1.69255755 0.024121 133 31 SH16927 16927 YGR001C_7_498029_497128_INTRON_36_97 intron 27.686838 108.185461 27.686838 81.498623 54.5927305 1.737134816 -0.076639 133 32 SH3992 3992 RNase MRP 3' 27.704312 80.836248 54.27028 1.734562062 -0.06728 133 33 SH16862 16862 YGL187C_7_150529_149708_INTRON_1_342 intron 32.003371 119.492306 32.003371 88.488935 60.246153 1.77992932 0.040582 133 34 SH9434 9434 RUF2 RUF2 11 29 31.290409 81.329152 56.3097805 1.750583834 0.14095 133 35 SH15213 15213 MT COX3 cox3 26.02494 94.406205 26.02494 69.381265 47.7031025 1.678546625 -0.03791 133 36 SH4737 4737 snR4 3' 41.042571 98.597978 69.8202745 1.843981552 0.04932 133 37 SH15314 15314 YAL003W_1_142172_143158_INTRON_81_446 intron 27.934274 102.362279 27.934274 75.428005 51.6811395 1.713332081 0.017626 133 38 SH8964 8964 snR17a / U3a U3a 106 118 40.177131 110.86048 75.5188055 1.878055112 -0.207949 133 39 SH643 643 Gln2 tRNA 1 18 79.721233 174.45685 127.0890415 2.104108104 -0.388688 133 40 SH8659 8659 LSR1 / U2 RNA 5' 29.384527 80.318429 54.851478 1.739188334 0.050095 133 41 SH19193 19193 YPL081W_16_404945_406039_INTRON_8_508 5' exon 29.008655 114.431555 29.008655 86.4229 57.7157775 1.76129455 -0.054367 133 42 SH4077 4077 SRP RNA SRP RNA 276 293 64.372497 107.67656 86.0245285 1.934622301 0.275304 133 43 SH21576 21576 copy of SH5622 31.936937 87.072243 59.50459 1.774550467 0.062768 133 44 SH15315 15315 YAL003W_1_142172_143158_INTRON_81_446 intron 29.858507 98.59452 29.858507 69.736013 49.79726 1.697205447 0.221698 133 45 SH9720 9720 RUF4 RUF4 376 391 29.466464 79.614283 54.5403735 1.736718108 0.064158 133 46 SH6145 6145 snR39B snR39B 66 85 28.900565 82.960155 55.93036 1.747647615 -0.013596 133 47 SH16023 16023 YDL189W_4_122079_123590_INTRON_1_99 intron 28.799535 116.340408 28.799535 88.540873 58.670204 1.768417598 -0.101505 133 48 SH9431 9431 RUF2 5' - 13 -4 13 31.385345 80.204375 55.79486 1.746594192 0.166549 133 49 SH6019 6019 snR37 snR37 11 30 26.982011 71.076066 49.0290385 1.690453376 0.008483 133 50 SH15203 15203 MT COX3 cox3 33.852444 128.296411 33.852444 95.443967 64.6482055 1.810556474 -0.04484 133 51 SH4566 4566 U3b (snR17b) U3b 386 402 31.562941 80.952034 56.2574875 1.750180332 0.159747 133 52 SH17464 17464 YIL148W_9_68708_69528_INTRON_9_442 intron 29.496343 109.080987 29.496343 80.584644 55.0404935 1.740682319 0.053938 133 53 SH6817 6817 snR52 5' - 10 -9 10 27.493507 91.775886 59.6346965 1.775499013 -0.219134 133 54 SH3177 3177 Ser5 tRNA 6 18 562.587052 1141.555451 852.0712515 2.930475913 -1.03161 133 55 SH8246 8246 snoRNA cluster4 5' 29.232741 102.607307 29.232741 74.374566 51.8036535 1.71436039 0.117315 133 56 SH20497 20497 YGR001C spliced 42.109495 110.328447 76.218971 1.882063081 -0.15793 133 57 SH14361 14361 MT ORF9 and ORF10 (hypothetical) ORF9 25.948243 97.497593 25.948243 72.54935 49.2487965 1.692395622 -0.086439 133 58 SH6616 6616 snR48 5' 33.50592 78.64861 56.077265 1.748786824 0.284358 133 59 SH1710 1710 Leu6 3' flank 28.999367 77.522079 53.260723 1.726407058 0.060714 133 60 SH4540 4540 U3b (snR17b) U3b 256 274 28.559913 85.885528 57.2227205 1.757568501 -0.070634 133 61 SH2654 2654 Pro4 5' flank 28.595133 75.2133 51.9042165 1.71520264 0.064536 133 62 SH9969 9969 RUF5-1 RUF5-1 651 667 34.415539 92.341623 63.378581 1.801942511 0.036362 133 63 SH1973 1973 Lys2 66-73 + 3' flank 66 83 28.317946 72.474032 50.395989 1.702395972 0.082858 133 64 SH10297 10297 RUF7 RUF7 96 117 28.517852 86.737096 57.627474 1.760629583 -0.083289 133 65 SH1620 1620 Leu5 5' flank 28.688555 78.631894 53.6602245 1.729652485 0.026179 133 66 SH11095 11095 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2361 2374 72.757154 107.001347 89.8792505 1.953659442 0.407728 133 67 SH1905 1905 Lys1 5' flank 32.860098 87.422998 60.141548 1.779174602 0.094688 133 68 SH17916 17916 YLR061W_12_263195_263949_INTRON_13_401 intron 29.784415 107.51342 29.784415 78.729005 54.25671 1.734453456 0.095575 133 69 SH3418 3418 Trp1 5' flank 33.573078 95.510484 64.541781 1.809840945 -0.053338 133 70 SH529 529 Cys1 5' flank 26.073006 77.740674 51.90684 1.715224591 -0.14352 133 71 SH8787 8787 LSR1 / U2 RNA U2 576 593 28.195404 77.257447 52.7264255 1.72202833 0.011164 133 72 SH13888 13888 MT COB intronic 23.953058 91.096541 23.953058 68.143483 46.0482705 1.663213323 -0.176772 133 73 SH15982 15982 YDL136W_4_217600_218367_INTRON_4_408 intron 26.109192 101.031299 26.109192 75.922107 51.0156495 1.70770342 -0.118135 133 74 SH1630 1630 Leu5 tRNA 16 28 30.298945 84.275172 57.2870585 1.758056523 0.042809 133 75 SH3843 3843 RNaseP RNaseP 181 196 36.980206 92.142822 64.561514 1.809973706 0.102172 133 76 SH1589 1589 Leu4 3' flank 26.100065 67.711601 46.905833 1.671226853 -0.008984 133 77 SH17299 17299 YHR141C_8_382752_381991_INTRON_5_445 3' exon 659.289445 1421.451305 659.289445 763.16186 711.2256525 2.852007412 -0.188273 133 78 SH1181 1181 His1 3' flank 28.86027 78.660598 53.760434 1.730462766 0.037057 133 79 SH6931 6931 snR58 snR58 16 33 26.738218 76.941723 51.8399705 1.714664746 -0.08509 133 80 SH18594 18594 YNL069C_14_494998_493953_INTRON_29_477 exon/intron 27.048153 106.900104 27.048153 80.851951 53.950052 1.731991868 -0.112637 133 81 SH2128 2128 Met1 tRNA 26 42 32.222641 88.285694 60.2541675 1.77998709 0.053278 133 82 SH10582 10582 RUF8 RUF8 836 853 27.956621 77.716782 52.8367015 1.722935698 -0.010796 133 83 SH1295 1295 Ile2 3' flank 28.012728 81.66908 54.840904 1.739104605 -0.056683 133 84 SH18730 18730 YNL147W_14_350937_351380_INTRON_19_138 intron 34.788748 124.968465 34.788748 91.179717 62.9842325 1.799231842 0.071295 133 85 SH21483 21483 copy of SH1656 28.406628 67.239979 47.8233035 1.679639573 0.16081 133 86 SH9648 9648 RUF4 RUF4 16 28 34.15276 103.774801 68.9637805 1.838621061 -0.207426 133 87 SH865 865 Glu2 3' flank 29.58954 73.960085 51.7748125 1.714118535 0.145769 133 88 SH13504 13504 MT COX1 intronic 27.216142 97.818017 27.216142 71.601875 49.4090085 1.693806139 0.018049 133 89 SH4135 4135 SRP RNA SRP RNA 566 578 51.838024 114.26492 83.051472 1.919347334 -0.044808 133 90 SH17695 17695 YKL006W_11_431544_432358_INTRON_130_527 intron 25.525317 94.944253 25.525317 70.418936 47.9721265 1.68098897 -0.089486 133 91 SH17661 17661 YKL002W_11_437416_438182_INTRON_61_128 3' exon 28.626298 99.648426 28.626298 72.022128 50.324213 1.701776992 0.109716 133 92 SH12728 12728 MT COX1 Exon1 27.747017 123.287787 27.747017 96.54077 62.1438935 1.79339846 -0.28515 133 93 SH13250 13250 MT COX1 COX1-ai4 24.981132 99.775563 24.981132 75.794431 50.3877815 1.702325237 -0.201576 133 94 SH11661 11661 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5191 5204 53.017523 89.308808 71.1631655 1.852255258 0.468205 133 95 SH5739 5739 snR34 3' 60.876454 106.668915 83.7726845 1.923102433 0.240526 133 96 SH8813 8813 LSR1 / U2 RNA U2 706 718 793.54934 877.676125 835.6127325 2.922005049 -0.167027 133 97 SH2529 2529 Pro1 3' flank 27.149893 76.717489 51.933691 1.71544919 -0.053009 133 98 SH5776 5776 snR35 snR35 66 87 26.146165 68.561557 47.353861 1.675355395 -0.017556 133 99 SH7183 7183 snR64 5' 57.537923 104.53391 81.0359165 1.908677548 0.226159 133 100 SH18382 18382 YMR116C_13_500687_499455_INTRON_538_810 intron 28.223818 109.17404 28.223818 81.950222 55.08702 1.741049279 -0.045978 133 101 SH7143 7143 snR63 snR63 221 238 33.701377 89.249 61.4751885 1.788699869 0.087613 133 102 SH6110 6110 snR37 3' 36.940567 84.164434 60.5525005 1.782132082 0.285167 133 103 SH5440 5440 snR31 3' 28.198568 90.596037 59.3973025 1.773766722 -0.165227 133 104 SH16211 16211 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 33.664389 119.749605 33.664389 87.085216 60.3748025 1.780855723 0.133041 134 2 SH7191 7191 snR64 snR64 21 37 116.340453 158.35281 137.3466315 2.137818013 0.21184 134 3 SH18754 18754 YNL162W_14_331319_332151_INTRON_5_516 intron 27.269736 101.338849 27.269736 75.069113 51.1694245 1.709010533 -0.023539 134 4 SH2884 2884 Pro8 5' flank 27.201098 77.308025 52.2545615 1.718124208 -0.057136 134 5 SH8448 8448 snoRNA cluster 5 snR128 40.472754 134.189328 40.472754 94.716574 67.594664 1.829912414 0.120656 134 6 SH9964 9964 RUF5-1 RUF5-1 626 642 29.890793 96.53444 63.2126165 1.800803767 -0.185441 134 7 SH981 981 Gly1 3' flank 32.38373 95.46142 63.922575 1.805654261 -0.083123 134 8 SH3674 3674 Val2 3' flank 29.924715 79.911789 54.918252 1.739716706 0.0895 134 9 SH15735 15735 YBR230C_2_680008_679507_INTRON_12_108 3' exon 29.783644 108.729523 29.783644 79.945879 54.8647615 1.739293496 0.08017 134 10 SH2519 2519 Pro1 3' flank 34.741763 85.417666 60.0797145 1.77872786 0.2027 134 11 SH16786 16786 YGL103W_7_310965_311925_INTRON_50_560 intron 28.713329 105.757878 28.713329 78.044549 53.378939 1.727369937 0.035312 134 12 SH6738 6738 snR49 3' 29.070887 73.238896 51.1548915 1.708887168 0.12226 134 13 SH1446 1446 Leu2 tRNA 1 13 171.464234 248.260734 209.862484 2.321934809 -0.083281 134 14 SH4667 4667 snR3 3' 29.360583 77.69581 53.5281965 1.728582611 0.081797 134 15 SH8143 8143 snoRNA cluster 3; intergenic 54.999823 175.045318 54.999823 121.045495 88.022659 1.944594484 -0.100647 134 16 SH15974 15974 YDL136W_4_217600_218367_INTRON_4_408 intron 29.669587 128.125176 29.669587 99.455589 64.562588 1.809980931 -0.2415 134 17 SH13303 13303 MT COX1 COX1-ai5a 29.637802 146.264325 29.637802 117.626523 73.6321625 1.867067555 -0.582843 134 18 SH17046 17046 YGR214W_7_920570_921783_INTRON_91_545 intron 29.255928 146.047219 29.255928 117.791291 73.5236095 1.86642682 -0.59677 134 19 SH4277 4277 telomerase RNA telomerase 421 435 35.538046 78.455783 56.9969145 1.755851346 0.366964 134 20 SH12225 12225 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.562816 104.544719 30.562816 74.981903 52.7723595 1.722406512 0.193009 134 21 SH1593 1593 Leu4 3' flank 51.017139 104.396152 77.7066455 1.890458161 0.12089 134 22 SH21450 21450 copy of SH252 30.742489 82.88919 56.8158395 1.754469428 0.087913 134 23 SH124 124 Arg1 5' flank - tRNA10 5' flank 10 30.534004 75.249657 52.8918305 1.723388598 0.187663 134 24 SH3483 3483 Tyr1 5' flank 37.424108 92.279052 64.85158 1.811920561 0.109371 134 25 SH251 251 Arg3 3' flank 28.984257 78.354154 53.6692055 1.729725166 0.049043 134 26 SH7905 7905 snoRNA cluster1 intergenic 29.580494 112.538328 29.580494 83.957834 56.769164 1.754112499 0.016527 134 27 SH14826 14826 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly / 3' 26.914769 101.260592 26.914769 75.345823 51.130296 1.708678307 -0.052303 134 28 SH19508 19508 ACT1 39.568128 102.362894 70.965511 1.851047334 -0.058076 134 29 SH5734 5734 snR34 3' 30.056116 81.196959 55.6265375 1.745282028 0.081782 134 30 SH20478 20478 YGL189C spliced 30.892761 90.87312 60.8829405 1.78449562 -0.047819 134 31 SH10236 10236 RUF6 RUF6 1026 1042 29.623414 85.025461 57.3244375 1.758339802 -0.001081 134 32 SH15534 15534 YBR078W_2_393082_394818_INTRON_59_388 exon/intron 32.382908 119.364262 32.382908 87.981354 60.182131 1.779467562 0.06526 134 33 SH95 95 Ala2 3' flank 29.970588 79.985495 54.9780415 1.740189265 0.091463 134 34 SH15330 15330 YAL003W_1_142172_143158_INTRON_81_446 intron/exon 27.430699 98.201936 27.430699 71.771237 49.600968 1.695490152 0.030904 134 35 SH376 376 Asn1 5' flank 26.925569 77.948564 52.4370665 1.719638388 -0.08458 134 36 SH15919 15919 YDL083C_4_307788_306925_INTRON_25_456 intron 26.322135 96.513546 26.322135 71.191411 48.756773 1.688034954 -0.040757 134 37 SH8706 8706 LSR1 / U2 RNA U2 171 187 30.614316 79.387471 55.0008935 1.740369745 0.139018 134 38 SH5157 5157 snR13 5' 26.355331 71.761976 49.0586535 1.690715624 -0.04599 134 39 SH16947 16947 YGR027C_7_534779_534126_INTRON_1_312 intron 28.828019 108.623413 28.828019 80.795394 54.8117065 1.738873324 0.008141 134 40 SH2819 2819 Pro7 5' flank 26.35186 61.407418 43.879639 1.642263046 0.1074 134 41 SH464 464 Asp1 3' flank 42.325557 101.878492 72.1020245 1.857947459 0.008073 134 42 SH11345 11345 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3611 3624 180.274282 163.173168 171.723725 2.234830301 0.680375 134 43 SH8388 8388 snoRNA cluster 5 snR190 79.555924 221.589119 79.555924 143.033195 111.2945595 2.046473935 -0.035248 134 44 SH20316 20316 YER044C-A spliced 29.38004 83.601017 56.4905285 1.751975638 0.009702 134 45 SH20675 20675 YIL106W spliced 26.642005 79.144674 52.8933395 1.723400988 -0.119776 134 46 SH6645 6645 snR48 snR48 51 68 30.734677 72.243876 51.4892765 1.711716789 0.240819 134 47 SH17270 17270 YHR123W_8_354817_356083_INTRON_51_141 intron 28.638153 99.429271 28.638153 71.791118 50.2146355 1.700830315 0.113596 134 48 SH94 94 Ala2 3' flank 31.512957 86.005809 58.759383 1.769077227 0.063944 134 49 SH20234 20234 YDR139C spliced 27.350072 84.223236 55.786654 1.746530314 -0.132622 134 50 SH13292 13292 MT COX1 COX1-ai5a 29.718696 122.077947 29.718696 93.359251 61.5389735 1.789150248 -0.141431 134 51 SH5164 5164 snR13 5' 27.220004 63.970055 45.5950295 1.658917501 0.126473 134 52 SH18633 18633 YNL096C_14_444312_443395_INTRON_145_489 intron 34.092102 126.724243 34.092102 93.632141 63.8621215 1.805243342 0.000109 134 53 SH18229 18229 YML026C_13_223828_222987_INTRON_48_448 intron 31.913935 115.550621 31.913935 84.636686 58.2753105 1.765484596 0.105691 134 54 SH14253 14253 MT VAR1 includes 5’ processing site 5' and processing site for var1 27.267998 98.939443 27.267998 72.671445 49.9697215 1.698706929 0.007486 134 55 SH6308 6308 snR42 snR42 321 337 31.453776 94.536817 62.9952965 1.799308124 -0.088263 134 56 SH8519 8519 snR19 / U1 RNA U1 91 109 28.479268 85.298106 56.888687 1.75502591 -0.069091 134 57 SH12156 12156 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7666 7684 46.518685 108.576762 77.5477235 1.889569053 -0.039778 134 58 SH19307 19307 YPL198W_16_173151_174701_INTRON_12_420 intron 31.226989 113.623914 31.226989 83.396925 57.311957 1.758245238 0.099395 134 59 SH1036 1036 Gly3 5' flank 27.775305 67.196988 47.4861465 1.676566928 0.11814 134 60 SH6730 6730 snR49 3' 28.497979 73.935979 51.216979 1.709413958 0.075273 134 61 SH5722 5722 snR34 snR34 531 549 30.991973 85.265763 58.128868 1.764391866 0.055001 134 62 SH11279 11279 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3281 3301 28.413274 70.500001 49.4566375 1.694224586 0.115829 134 63 SH13541 13541 MT COX1 intronic 28.493886 104.367784 28.493886 76.873898 52.683892 1.721677851 0.035988 134 64 SH6776 6776 snR50 snR50 56 74 29.893598 87.402963 58.6482805 1.768255284 -0.031592 134 65 SH13548 13548 MT COX1 intronic 28.624082 103.927493 28.624082 76.303411 52.4637465 1.719859301 0.052036 134 66 SH18022 18022 YLR306W_12_744151_744851_INTRON_4_137 intron 30.766156 121.83715 30.766156 92.070994 61.418575 1.788299736 -0.073574 134 67 SH17244 17244 YHR079C-A_8_262554_262193_INTRON_114_199 3' exon 30.385915 119.473404 30.385915 90.087489 60.236702 1.779861186 -0.056528 134 68 SH10559 10559 RUF8 RUF8 721 738 27.527564 66.623643 47.0756035 1.672795896 0.109109 134 69 SH15103 15103 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 26.765646 93.92764 26.765646 68.161994 47.46382 1.676362688 0.033149 134 70 SH16915 16915 YGL251C_7_31636_27921_INTRON_59_210 intron 42.07114 139.162619 42.07114 98.091479 70.0813095 1.845602208 0.080308 134 71 SH11765 11765 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5711 5727 6381.943386 4863.244354 5622.59387 3.749936715 -0.1388 134 72 SH4913 4913 snR9 5' 30.341121 73.188059 51.76459 1.714032779 0.203535 134 73 SH1448 1448 Leu2 tRNA 11 23 48.399812 119.213164 83.806488 1.923277641 -0.190561 134 74 SH10320 10320 RUF7 RUF7 211 225 36.852272 93.389998 65.121135 1.813721961 0.071909 134 75 SH16244 16244 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 27.070851 113.706147 27.070851 87.635296 57.3530735 1.758556696 -0.191718 134 76 SH9166 9166 snR7 U5 RNA U5 101 115 40.926769 99.440115 70.183442 1.846234663 0.029453 134 77 SH4509 4509 U3b (snR17b) U3b 101 117 30.974415 89.470116 60.2222655 1.779757089 -0.020216 134 78 SH4592 4592 U3b (snR17b) 3' 31.446386 78.504365 54.9753755 1.740168204 0.200745 134 79 SH12491 12491 MT_tRNA Pro 5' 27.218352 97.162072 27.218352 70.94372 49.081036 1.690913721 0.027066 134 80 SH2561 2561 Pro2 tRNA-intron 41 58 27.391859 84.441041 55.91645 1.747539591 -0.132332 134 81 SH12589 12589 MT_15S MT_15S 29.887688 125.078648 29.887688 96.19096 63.039324 1.799611547 -0.180066 134 82 SH13007 13007 MT COX1 COX1ai2 27.763969 104.185536 27.763969 77.421567 52.592768 1.720926029 -0.020014 134 83 SH5695 5695 snR34 snR34 396 415 30.213373 74.501314 52.3573435 1.718977603 0.17778 134 84 SH21779 21779 copy of SH14229 27.334343 82.99998 55.1671615 1.741680639 -0.119058 134 85 SH1055 1055 Gly3 tRNA 11 29 33.788266 89.595297 61.6917815 1.790227312 0.08195 134 86 SH18228 18228 YML026C_13_223828_222987_INTRON_48_448 intron 28.939409 124.241254 28.939409 96.301845 62.620627 1.796717412 -0.225002 134 87 SH5014 5014 snR10 snR10 101 122 29.135099 67.21128 48.1731895 1.682805401 0.209983 134 88 SH19960 19960 YBL059C-A spliced 31.771422 87.388945 59.5801835 1.775101836 0.050197 134 89 SH5733 5733 snR34 3' 29.229162 71.303568 50.266365 1.70127748 0.159304 134 90 SH1773 1773 Leu7 3' flank 28.120495 82.978401 55.549448 1.744679748 -0.065372 134 91 SH12347 12347 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.377684 118.551235 37.377684 82.173551 59.7756175 1.776524071 0.343834 134 92 SH21557 21557 copy of SH4783 25.506395 62.359672 43.9330335 1.642791192 0.03081 134 93 SH9665 9665 RUF4 RUF4 101 113 42.440023 115.664122 79.0520725 1.89791326 -0.247023 134 94 SH18159 18159 YLR426W_12_987057_988108_INTRON_81_151 intron/exon 33.54935 128.290131 33.54935 95.740781 64.6450655 1.81053538 -0.058832 134 95 SH9704 9704 RUF4 RUF4 296 311 31.56273 80.045823 55.8042765 1.746667482 0.177153 134 96 SH983 983 Gly2 5' flank 30.396524 82.225523 56.3110235 1.750593421 0.085202 134 97 SH240 240 Arg3 56-68 56 68 40.084807 102.242627 71.163717 1.852258624 -0.044977 134 98 SH15964 15964 YDL130W_4_229906_230527_INTRON_115_415 intron 28.72011 111.448693 28.72011 83.728583 56.2243465 1.749924416 -0.034629 134 99 SH317 317 Arg5 5' flank 29.0958 79.399644 54.247722 1.734381506 0.043009 134 100 SH2205 2205 Phe1 5' flank 26.397587 66.079738 46.2386625 1.665005263 0.036254 134 101 SH554 554 Cys1 71-72 + 3' flank 71 3' flank 27.39593 74.525965 50.9609475 1.707237494 -0.00768 134 102 SH5173 5173 snR13 snR13 21 38 58.902818 127.765713 93.3342655 1.970041114 -0.137655 134 103 SH6495 6495 snR46 5' 25.93191 72.320787 49.1263485 1.691314485 -0.084624 134 104 SH10458 10458 RUF8 RUF8 216 232 33.880046 91.091364 62.485705 1.795780674 0.050641 135 2 SH18509 18509 YMR194W_13_651144_651909_INTRON_17_479 3' exon 31.981358 138.875455 31.981358 107.894097 69.9377275 1.844711517 -0.342419 135 3 SH414 414 Asn1 3' flank 38.939776 101.95987 70.449823 1.847879906 -0.063109 135 4 SH2233 2233 Phe1 tRNA-intron/exon 41 59 27.788895 82.820398 55.3046465 1.742761621 -0.085814 135 5 SH13383 13383 MT COX1 Exon 5b 28.011864 101.479446 28.011864 74.467582 51.239723 1.709606773 0.035683 135 6 SH1180 1180 His1 3' flank 28.419964 79.122647 53.7713055 1.730550581 0.002226 135 7 SH18644 18644 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.497949 97.835658 27.497949 71.337709 49.417829 1.693883662 0.041433 135 8 SH18126 18126 YLR388W_12_898158_898821_INTRON_1_488 intron 32.86658 121.997903 32.86658 90.131323 61.4989515 1.788867712 0.046198 135 9 SH18255 18255 YML034W_13_209525_212155_INTRON_1921_2046 3' exon 32.649036 117.359077 32.649036 85.710041 59.1795385 1.772171574 0.116675 135 10 SH21451 21451 copy of SH294 28.475833 70.965357 49.720595 1.696536317 0.113751 135 11 SH2332 2332 Phe3 5' flank - tRNA5 5 28.999334 88.399202 58.699268 1.768632685 -0.089774 135 12 SH9115 9115 snR14 / U4 RNA 3' 29.439832 81.794912 55.617372 1.745210464 0.0354 135 13 SH12758 12758 MT COX1 COX1ai1 80.975516 217.711913 80.975516 137.736397 109.3559565 2.038842444 0.052161 135 14 SH14208 14208 MT ATP9 5' 27.667417 97.962221 27.667417 71.294804 49.4811105 1.694439438 0.053843 135 15 SH15190 15190 MT COX3 cox3 27.619042 91.108377 27.619042 64.489335 46.0541885 1.663269134 0.146741 135 16 SH8876 8876 LSR1 / U2 RNA U2 1021 1037 70.257758 125.996806 98.127282 1.99178977 0.065886 135 17 SH4033 4033 SRP RNA SRP RNA 56 75 27.215712 70.161915 48.6888135 1.687429191 0.037513 135 18 SH9968 9968 RUF5-1 RUF5-1 646 663 29.158099 83.308009 56.233054 1.749991671 -0.00107 135 19 SH13077 13077 MT COX1 COX1ai3 28.48451 94.322544 28.48451 66.838034 47.661272 1.678165629 0.171836 135 20 SH541 541 Cys1 tRNA 6 18 154.047388 287.804997 220.9261925 2.344247208 -0.459963 135 21 SH18867 18867 YNR053C_14_723108_721117_INTRON_811_1341 intron 34.824248 130.962377 34.824248 97.138129 65.9811885 1.819420134 -0.056378 135 22 SH7863 7863 snoRNA cluster1 intergenic/snR73 27.173571 95.718235 27.173571 69.544664 48.3591175 1.684478367 0.043008 135 23 SH17462 17462 YIL148W_9_68708_69528_INTRON_9_442 intron 35.004875 123.081369 35.004875 89.076494 62.0406845 1.792676581 0.123978 135 24 SH14856 14856 MT tRNA Ser2; tRNA Arg2 tRNA Ser 32.943195 132.17403 32.943195 100.230835 66.587015 1.823389547 -0.167485 135 25 SH7590 7590 snR189 snR189 21 37 29.109462 74.370125 51.7397935 1.713824691 0.109413 135 26 SH11348 11348 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3626 3643 27.267334 82.525822 54.896578 1.739545273 -0.117947 135 27 SH818 818 Glu1 3' flank 28.935928 76.080741 52.5083345 1.720228243 0.075378 135 28 SH17794 17794 YKL186C_11_93537_92746_INTRON_71_233 intron 57.545205 182.811025 57.545205 126.26582 91.9055125 1.963341561 -0.138458 135 29 SH11727 11727 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5521 5539 49.221816 101.064997 75.1434065 1.875890879 0.153709 135 30 SH3413 3413 Thr4 3' flank 25.738227 79.710963 52.724595 1.722013252 -0.192424 135 31 SH11368 11368 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3726 3742 1465.917744 1093.970899 1279.944322 3.107191078 0.29396 135 32 SH1209 1209 Ile1 tRNA 6 18 29.839521 83.951145 56.895333 1.755076644 0.028319 135 33 SH19073 19073 YOR293W_15_867094_867848_INTRON_53_489 intron 29.928805 113.772494 29.928805 84.843689 57.386247 1.758807823 0.015957 135 34 SH5298 5298 snR30 snR30 341 359 27.60206 89.826572 58.714316 1.768744006 -0.180648 135 35 SH12614 12614 MT_15S MT_15S 29.649249 103.741329 29.649249 75.09208 52.3706645 1.719088084 0.134359 135 36 SH20402 20402 YFR031C-A spliced 33.729393 88.74593 61.2376615 1.787018598 0.099802 135 37 SH21389 21389 Phe1_5 spliced 132.100981 153.131649 142.616315 2.154169211 0.41811 135 38 SH20533 20533 YGR148C spliced 30.920996 90.287909 60.6044525 1.782504532 -0.036602 135 39 SH7192 7192 snR64 snR64 26 43 1528.516595 1764.145035 1646.330815 3.216517107 -0.39955 135 40 SH3001 3001 Ser2 5' flank 26.808879 79.035478 52.9221785 1.723637713 -0.106628 135 41 SH5362 5362 snR30 3' 25.613764 88.464035 57.0388995 1.756171138 -0.305389 135 42 SH12855 12855 MT COX1 COX1ai1 33.00927 109.864945 33.00927 77.855675 55.4324725 1.74376425 0.280046 135 43 SH14017 14017 MT COB Exon4 26.688546 96.1499 26.688546 70.461354 48.57495 1.686412362 -0.004243 135 44 SH5450 5450 snR32 5' 28.857478 78.916554 53.887016 1.731484135 0.033623 135 45 SH4192 4192 telomerase RNA 5' - 15 15 28.237468 95.763714 62.000591 1.792395829 -0.249197 135 46 SH19918 19918 YAL030W spliced 41.401178 101.289463 71.3453205 1.853365493 0.000927 135 47 SH13152 13152 MT COX1 intronic 32.902487 117.445444 32.902487 85.542957 59.222722 1.772488365 0.130044 135 48 SH10379 10379 RUF7 3' 29.255152 91.785842 60.520497 1.781902486 -0.136178 135 49 SH7783 7783 snoRNA cluster1 intergenic 27.593216 96.974203 27.593216 70.380987 48.9871015 1.690081744 0.06105 135 50 SH21300 21300 YPL198W spliced 30.057439 88.07202 59.0647295 1.771328219 -0.036073 135 51 SH19471 19471 ADH1 27.354983 70.273196 48.8140895 1.688545193 0.045822 135 52 SH8911 8911 LSR1 / U2 RNA 3' 29.183445 76.203134 52.6932895 1.721755311 0.089817 135 53 SH8581 8581 snR19 / U1 RNA U1 401 413 83.131389 145.358019 114.244704 2.057836077 -0.017242 135 54 SH13772 13772 MT COB intronic 26.791768 116.056805 26.791768 90.265037 58.5284025 1.76736667 -0.240846 135 55 SH14958 14958 MT tRNA Met 3' 29.150615 106.86884 29.150615 78.718225 53.93442 1.731866013 0.055185 135 56 SH15337 15337 YAL030W_1_87288_87754_INTRON_103_215 intron 26.810245 108.694385 26.810245 82.88414 54.8471925 1.739154402 -0.154137 135 57 SH19606 19606 RNA14 1.1 29.074059 82.963723 56.018891 1.748334507 -0.002362 135 58 SH10921 10921 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1491 1511 288.529208 372.760765 330.6449865 2.519361942 -0.099444 135 59 SH17618 17618 YJR021C_10_469271_468247_INTRON_317_396 3' exon 27.721201 110.027555 27.721201 83.306354 55.5137775 1.74440078 -0.096267 135 60 SH9452 9452 RUF2 RUF2 101 116 28.188962 80.586061 54.3875115 1.735499188 -0.0315 135 61 SH6077 6077 snR37 snR37 301 313 76.655086 122.794342 99.724714 1.998802799 0.203975 135 62 SH4997 4997 snR10 snR10 16 30 35.644745 91.935493 63.790119 1.804753412 0.075309 135 63 SH11847 11847 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6121 6139 3471.699088 2364.847221 2918.273155 3.46512594 0.210417 135 64 SH20619 20619 YHR097C spliced 28.424086 85.831834 57.12796 1.756848716 -0.07899 135 65 SH9780 9780 RUF4 RUF4 676 691 84.307252 123.736554 104.021903 2.017124795 0.289825 135 66 SH9468 9468 RUF2 RUF2 181 200 30.529513 82.329439 56.429476 1.751506017 0.089091 135 67 SH13140 13140 MT COX1 intronic 32.824086 114.754708 32.824086 82.930622 57.877354 1.762508668 0.174829 135 68 SH12513 12513 MT_ORF6 + ORF7 (hypothetical) 5'/ORF6 27.65249 94.594561 27.65249 67.942071 47.7972805 1.679403187 0.099025 135 69 SH1351 1351 Ile3 3' flank 29.174831 68.549991 48.862411 1.688974892 0.193682 135 70 SH1337 1337 Ile3 tRNA-intron 66 82 30.739343 90.472277 60.60581 1.78251426 -0.047644 135 71 SH16778 16778 YGL103W_7_310965_311925_INTRON_50_560 intron 28.399073 113.403109 28.399073 86.004036 57.2015545 1.757407831 -0.082656 135 72 SH6407 6407 snR43 3' 28.500172 84.307667 56.4039195 1.751309284 -0.056014 135 73 SH16025 16025 YDL189W_4_122079_123590_INTRON_1_99 3' exon 53.244071 150.66238 53.244071 98.418309 75.83119 1.879847871 0.276524 135 74 SH18875 18875 YNR053C_14_723108_721117_INTRON_811_1341 intron 26.511071 95.242952 26.511071 69.731881 48.121476 1.68233894 -0.007106 135 75 SH14289 14289 MT VAR1 includes 5’ processing site VAR1 26.794619 100.020382 26.794619 74.225763 50.510191 1.703379011 -0.046547 135 76 SH16955 16955 YGR029W_7_543547_544199_INTRON_87_169 intron 29.03414 115.684222 29.03414 87.650082 58.342111 1.765982139 -0.075004 135 77 SH10965 10965 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1711 1729 31.198952 72.918143 52.0585475 1.716492047 0.259767 135 78 SH5969 5969 snR36 snR36 301 317 29.028293 88.758209 58.893251 1.770065529 -0.094708 135 79 SH20577 20577 YHR012W spliced 26.906447 75.683277 51.294862 1.710073866 -0.057186 135 80 SH11731 11731 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5541 5558 14506.37471 7327.297705 10916.83621 4.038096794 0.282182 135 81 SH9228 9228 snR6 / U6 RNA U6 11 25 36.502904 83.203389 59.8531465 1.777086986 0.298301 135 82 SH9759 9759 RUF4 RUF4 571 585 123.173663 173.498273 148.335968 2.17124647 0.122889 135 83 SH11628 11628 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5026 5041 1020.861337 843.762951 932.312144 2.969561341 0.225105 135 84 SH11133 11133 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2551 2566 86.7438 130.953674 108.848737 2.036823394 0.217482 135 85 SH18132 18132 YLR406C_12_931752_931062_INTRON_58_406 5' exon 32.351774 121.525629 32.351774 90.173855 61.2628145 1.787196945 0.025895 135 86 SH16905 16905 YGL232W_7_62074_63001_INTRON_58_115 5' exon 30.661868 123.549626 30.661868 93.887758 62.274813 1.794312432 -0.108347 135 87 SH19772 19772 Negative Control 28.480961 70.396723 49.438842 1.69406829 0.121818 135 88 SH12501 12501 MT_tRNA Pro tRNA/3' 26.727703 97.827921 26.727703 72.100218 49.4139605 1.693849664 -0.023483 135 89 SH10656 10656 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 166 183 58.723292 124.288327 91.5058095 1.961448667 -0.088463 135 90 SH7524 7524 snR79 5' 26.22773 70.061897 48.1448135 1.682549509 -0.032329 135 91 SH17930 17930 YLR093C_12_327416_326514_INTRON_17_157 5' exon 35.61896 157.783098 35.61896 123.164138 79.391549 1.899774276 -0.524629 135 92 SH12703 12703 MT ORF 8 (hypothetical) ORF8 31.702135 125.803617 31.702135 95.101482 63.4018085 1.802101646 -0.093633 135 93 SH19240 19240 YPL090C_16_378390_377286_INTRON_7_400 intron 30.492245 99.744378 30.492245 70.252133 50.372189 1.702190824 0.253888 135 94 SH19727 19727 Negative Control 30.062202 78.489486 54.275844 1.734606586 0.116117 135 95 SH4980 4980 snR10 5' 32.387169 75.11484 53.7510045 1.730386585 0.300476 135 96 SH12392 12392 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.343774 128.627799 35.343774 94.284025 64.8138995 1.811668151 0.016838 135 97 SH14400 14400 MT 21S rRNA 21S rRNA3 26.166322 97.677073 26.166322 72.510751 49.3385365 1.693186263 -0.069811 135 98 SH7827 7827 snoRNA cluster1 intergenic 26.982147 99.916133 26.982147 73.933986 50.4580665 1.702930605 -0.029336 135 99 SH19242 19242 YPL090C_16_378390_377286_INTRON_7_400 intron 27.238548 95.476662 27.238548 69.238114 48.238331 1.683392273 0.051846 135 100 SH17827 17827 YKR057W_11_551293_551878_INTRON_25_346 3' exon 37.610281 136.694826 37.610281 100.084545 68.847413 1.837887626 -0.0534 135 101 SH21407 21407 Ser3 spliced 105.468658 147.81354 126.641099 2.102574671 0.218202 135 102 SH16412 16412 YER056C-A_5_270183_269421_INTRON_38_434 intron 37.035965 123.901515 37.035965 87.86555 62.4507575 1.795537711 0.199981 135 103 SH8387 8387 snoRNA cluster 5 snR190 47.208076 155.747942 47.208076 109.539866 78.373971 1.894171852 -0.044233 135 104 SH13945 13945 MT COB Cytbi3 24.61654 96.163839 24.61654 72.547299 48.5819195 1.68647467 -0.187874 136 2 SH18911 18911 YOL120C_15_94401_93394_INTRON_113_559 intron 27.224912 101.229716 27.224912 75.004804 51.114858 1.708547159 -0.025885 136 3 SH17367 17367 YIL052C_9_257061_256224_INTRON_38_509 intron 25.543139 100.038193 25.543139 75.495054 50.5190965 1.703455575 -0.154934 136 4 SH3202 3202 Ser5 3' flank 28.1601 78.640126 53.400113 1.727542176 -0.008957 136 5 SH20719 20719 YJL136C spliced 35.371528 91.46561 63.418569 1.802216438 0.079137 136 6 SH14301 14301 MT VAR1 includes 5’ processing site VAR1 26.638715 102.207108 26.638715 76.568393 51.603554 1.712679613 -0.087602 136 7 SH14553 14553 MT 21S rRNA 21S rRNA3 26.737227 92.918117 26.737227 67.18089 46.9590585 1.671719381 0.045015 136 8 SH7041 7041 snR62 5' - 18 -4 18 26.52583 84.545658 55.535744 1.744572594 -0.194104 136 9 SH20356 20356 YER117W spliced 28.63695 84.882908 56.759929 1.754041844 -0.053802 136 10 SH5101 5101 snR11 snR11 106 122 33.327954 118.487226 75.90759 1.880285203 -0.501007 136 11 SH610 610 Gln1 3' flank 29.036773 77.299013 53.167893 1.72564945 0.066028 136 12 SH4703 4703 snR4 snR4 51 72 29.282798 92.542621 60.9127095 1.784707918 -0.147616 136 13 SH4392 4392 telomerase RNA telomerase 996 1015 29.649213 121.776536 75.7128745 1.879169735 -0.653718 136 14 SH9669 9669 RUF4 RUF4 121 139 27.520166 63.716308 45.618237 1.659138497 0.151407 136 15 SH11877 11877 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6271 6284 4408.841464 2658.136156 3533.48881 3.54820372 0.33649 136 16 SH6010 6010 snR37 5' 29.004305 67.705542 48.3549235 1.684440701 0.194287 136 17 SH14183 14183 MT COB Exon6 26.502684 96.024357 26.502684 70.521673 48.5121785 1.685850778 -0.018522 136 18 SH5759 5759 snR35 5' 26.435582 63.470301 44.9529415 1.652758115 0.079752 136 19 SH5226 5226 snR30 5' - 3 -19 3 30.6074 91.395732 61.001566 1.785340984 -0.069111 136 20 SH17981 17981 YLR211C_12_564531_563792_INTRON_19_77 3' exon 34.830114 128.693991 34.830114 94.863877 64.8469955 1.811889859 -0.008125 136 21 SH19807 19807 Negative Control 32.876125 99.529515 66.20282 1.820876489 -0.154968 136 22 SH18393 18393 YMR125W_13_517538_520445_INTRON_26_347 5' exon 26.564653 91.805836 26.564653 66.241183 46.402918 1.666545292 0.046062 136 23 SH9417 9417 RUF2 5' 31.267095 83.907852 57.5874735 1.760328025 0.091664 136 24 SH18107 18107 YLR367W_12_855877_857316_INTRON_698_1180 intron 29.135297 115.468466 29.135297 87.333169 58.234233 1.76517836 -0.064745 136 25 SH12092 12092 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7346 7364 31.898312 74.714514 53.306413 1.72677946 0.27717 136 26 SH9044 9044 snR17a / U3a 3' 27.432065 78.90842 53.1702425 1.725668641 -0.06172 136 27 SH1846 1846 Leu9 5' flank 29.003508 70.565269 49.7843885 1.697093177 0.154536 136 28 SH13767 13767 MT COB intronic 27.72528 114.633973 27.72528 87.908693 57.8169865 1.762055452 -0.149829 136 29 SH20730 20730 YJL189W spliced 36.14604 98.761635 67.4538375 1.829006662 -0.058626 136 30 SH5660 5660 snR34 snR34 221 236 58.947598 127.747833 93.3477155 1.970103694 -0.136635 136 31 SH5463 5463 snR32 5' 29.435305 67.843842 48.6395735 1.686989758 0.220736 136 32 SH14376 14376 MT ORF9 and ORF10 (hypothetical) ORF10 27.374459 106.570546 27.374459 80.196087 53.785273 1.730663377 -0.081887 136 33 SH3341 3341 Thr3 tRNA 51 67 34.213805 91.680306 62.9470555 1.79897542 0.045933 136 34 SH13739 13739 MT COB Exon1 27.238137 103.366674 27.238137 77.128537 52.183337 1.717531848 -0.052245 136 35 SH9411 9411 RUF1 3' 27.194102 79.346098 53.2701 1.726483512 -0.083674 136 36 SH9210 9210 snR6 / U6 RNA 5' 33.843888 94.737469 64.2906785 1.808148009 -0.029969 136 37 SH20016 20016 YBR084C-A spliced 28.92002 84.679219 56.7996195 1.754345426 -0.032863 136 38 SH892 892 Glu3 5' flank 28.570214 80.374088 54.472151 1.736174525 -0.003551 136 39 SH8686 8686 LSR1 / U2 RNA U2 71 87 28.029447 80.690942 54.3601945 1.735281002 -0.043495 136 40 SH6017 6017 snR37 snR37 1 18 50.347704 110.933191 80.6404475 1.906552929 -0.011908 136 41 SH9165 9165 snR7 U5 RNA U5 96 112 32.408417 89.622071 61.015244 1.785438352 0.037731 136 42 SH11944 11944 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6606 6624 1542.480848 1454.128157 1498.304503 3.175600085 -0.084411 136 43 SH383 383 Asn1 5' flank - tRNA12 5' flank 12 179.056455 253.122456 216.0894555 2.334633575 -0.062493 136 44 SH20862 20862 YLR093C spliced 26.370359 86.188338 56.2793485 1.750349061 -0.224446 136 45 SH1052 1052 Gly3 5' flank - tRNA12 12 48.39804 124.255082 86.326561 1.93614444 -0.27266 136 46 SH1291 1291 Ile2 3' flank 25.720397 79.690149 52.705273 1.721854067 -0.193508 136 47 SH1302 1302 Ile2 3' flank 26.178798 71.48516 48.831979 1.688704325 -0.055224 136 48 SH11238 11238 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3076 3091 107.039704 186.94264 146.991172 2.167291253 -0.17026 136 49 SH9256 9256 snR6 / U6 RNA 3' 34.857851 95.167775 65.012813 1.812998958 -0.01394 136 50 SH2377 2377 Phe4 5' flank 27.877574 71.050854 49.464214 1.694291112 0.071705 136 51 SH3049 3049 Ser3 5' flank 32.104983 102.257734 67.1813585 1.827248782 -0.230169 136 52 SH21929 21929 copy of SH21369 38.242845 105.100871 71.671858 1.855348663 -0.140551 136 53 SH21372 21372 Leu8_9 spliced 28.304441 73.485596 50.8950185 1.706675277 0.068551 136 54 SH8788 8788 LSR1 / U2 RNA U2 581 598 30.488999 79.690275 55.089637 1.741069911 0.127478 136 55 SH393 393 Asn1 46-61 46 61 27.691118 84.016029 55.8535735 1.747050964 -0.106806 136 56 SH15469 15469 YBL087C_2_60732_59815_INTRON_43_546 intron/exon 29.591087 106.72695 29.591087 78.135863 53.863475 1.731294368 0.090877 136 57 SH3218 3218 Thr1 5' flank 27.687577 70.967526 49.3275515 1.693089559 0.059661 136 58 SH4203 4203 telomerase RNA telomerase 51 67 30.065881 71.045927 50.555904 1.70377188 0.216107 136 59 SH20182 20182 YDL191W spliced 37.156615 96.870107 67.013361 1.8261614 0.003948 136 60 SH6086 6086 snR37 snR37 346 363 27.729081 82.438218 55.0836495 1.741022706 -0.085243 136 61 SH6313 6313 snR42 346-351 + 3' 346 27.917745 72.939056 50.4284005 1.702675193 0.04931 136 62 SH10509 10509 RUF8 RUF8 471 492 28.075883 66.623439 47.349661 1.675316874 0.147095 136 63 SH20838 20838 YLL050C spliced 29.317178 88.719029 59.0181035 1.77098525 -0.080772 136 64 SH3382 3382 Thr4 5' flank - tRNA12 12 32.837715 81.954442 57.3960785 1.758882221 0.193702 136 65 SH16463 16463 YER093C-A_5_348396_347908_INTRON_125_199 intron 30.231358 112.140686 30.231358 82.909328 56.570343 1.752588812 0.065098 136 66 SH14446 14446 MT 21S rRNA 21S rRNA3 29.066241 114.746892 29.066241 86.680651 57.873446 1.762479343 -0.056319 136 67 SH6516 6516 snR46 snR46 71 88 27.975351 75.72586 51.8506055 1.714753832 0.016449 136 68 SH15963 15963 YDL130W_4_229906_230527_INTRON_115_415 intron 64.563359 176.002363 64.563359 112.439004 88.5011815 1.946949069 0.195289 136 69 SH8523 8523 snR19 / U1 RNA U1 111 128 52.590938 107.891365 80.2411515 1.904397152 0.082416 136 70 SH142 142 Arg1 3' flank 35.838847 94.327724 65.0832855 1.813469469 0.027787 136 71 SH11290 11290 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3336 3353 28.962248 71.902515 50.4323815 1.702709477 0.133644 136 72 SH10014 10014 RUF6 5' 28.208105 66.128227 47.168166 1.67364899 0.163302 136 73 SH14544 14544 MT 21S rRNA 21S rRNA3 150.594652 345.532735 150.594652 195.938083 173.2663675 2.238714271 0.15611 136 74 SH20555 20555 YHL001W spliced 27.473894 75.497342 51.485618 1.71168593 -0.014634 136 75 SH9826 9826 RUF5-1 5' 27.486001 88.963291 58.224646 1.765106857 -0.178101 136 76 SH9873 9873 RUF5-1 RUF5-1 171 187 27.113476 69.769936 48.441706 1.68521943 0.035641 136 77 SH6922 6922 snR58 5' 26.633364 77.571106 52.102235 1.716856353 -0.100474 136 78 SH15006 15006 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 35.533367 127.038236 35.533367 92.504869 64.019118 1.806309687 0.060096 136 79 SH4108 4108 SRP RNA SRP RNA 431 443 112.899995 163.006895 137.953445 2.13973255 0.127027 136 80 SH18008 18008 YLR287C-A_12_713158_712537_INTRON_4_433 intron 33.187684 117.965599 33.187684 85.777915 59.4827995 1.7743914 0.137352 136 81 SH9374 9374 RUF1 RUF1 446 462 28.735013 84.326427 56.53072 1.752284517 -0.040775 136 82 SH11691 11691 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5341 5359 515.075895 463.803874 489.4398845 2.689699357 0.287564 136 83 SH19399 19399 YPR063C_16_678315_677807_INTRON_42_127 intron 29.49249 112.035916 29.49249 83.543426 56.517958 1.752186462 0.01759 136 84 SH16248 16248 YDR397C_4_1266887_1266355_INTRON_38_129 5' exon 26.916227 95.791056 26.916227 69.874829 48.395528 1.684805232 0.020138 136 85 SH18247 18247 YML034W_13_209525_212155_INTRON_1921_2046 exon/intron 53.573358 171.24694 53.573358 118.673582 86.12347 1.93512152 -0.087259 136 86 SH17028 17028 YGR183C_7_859471_859058_INTRON_4_216 5' exon 28.085567 103.650426 28.085567 76.564859 52.325213 1.718711005 0.012826 136 87 SH11184 11184 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2806 2819 50.896235 123.029081 86.962658 1.939332805 -0.205701 136 88 SH8786 8786 LSR1 / U2 RNA U2 571 590 28.546768 70.424354 49.485561 1.694478498 0.125886 136 89 SH5497 5497 snR32 snR32 146 165 26.815449 70.69885 48.7571495 1.688038307 0.001664 136 90 SH8784 8784 LSR1 / U2 RNA U2 561 580 28.657923 64.590573 46.624248 1.66861184 0.216346 136 91 SH6671 6671 snR48 3' 25.101639 71.367614 48.2346265 1.68335892 -0.134561 136 92 SH428 428 Asp1 5' flank 23.801649 71.292552 47.5471005 1.677124038 -0.234534 136 93 SH772 772 Gln4 3' flank 34.935781 124.636787 79.786284 1.901928239 -0.565336 136 94 SH4388 4388 telomerase RNA telomerase 976 995 26.836265 94.740615 60.78844 1.783820998 -0.300701 136 95 SH7005 7005 snR60 3' 28.42599 87.524419 57.9752045 1.763242289 -0.101117 136 96 SH172 172 Arg2 5' flank 28.131659 78.934047 53.532853 1.728620389 -0.014596 136 97 SH4237 4237 telomerase RNA telomerase 221 238 27.685724 74.064336 50.87503 1.706504678 0.018547 136 98 SH15168 15168 MT tRNA Val 3' 29.196544 95.211788 29.196544 67.015244 48.105894 1.68219829 0.216843 136 99 SH6801 6801 snR52 5' 27.252081 84.015744 55.6339125 1.745339603 -0.136916 136 100 SH2954 2954 Ser1 tRNA 1 13 161.090027 247.590478 204.3402525 2.310353926 -0.15499 136 101 SH6152 6152 snR39B 3' 26.389438 82.110397 54.2499175 1.734399082 -0.174555 136 102 SH16427 16427 YER074W_5_306319_307192_INTRON_4_469 intron 27.875026 104.747033 27.875026 77.872007 52.8735165 1.723238195 -0.018301 136 103 SH7859 7859 snoRNA cluster1 intergenic 25.642188 105.570478 25.642188 80.92829 53.285239 1.726606918 -0.214168 136 104 SH2689 2689 Pro4 3' flank 25.789106 84.100378 54.944742 1.739926138 -0.241888 137 2 SH16031 16031 YDL191W_4_117665_118518_INTRON_4_494 intron 33.394669 126.380266 33.394669 93.985597 63.690133 1.804072156 -0.025209 137 3 SH19887 19887 Positive Control 3 29.622281 75.117847 52.370064 1.719083105 0.132301 137 4 SH3859 3859 RNaseP RNaseP 261 277 28.022057 76.103294 52.0626755 1.716526483 0.014614 137 5 SH5487 5487 snR32 snR32 96 112 93.934853 165.454652 129.6947525 2.112922405 -0.110597 137 6 SH16701 16701 YGL031C_7_438393_437938_INTRON_1_456 intron 30.922435 113.327843 30.922435 83.405408 57.1639215 1.757122014 0.08612 137 7 SH21523 21523 copy of SH3384 28.584568 78.962376 53.773472 1.730568079 0.015138 137 8 SH4630 4630 snR3 snR3 66 81 30.683195 77.633687 54.158441 1.733666154 0.165619 137 9 SH10451 10451 RUF8 RUF8 181 199 28.516936 87.167418 57.842177 1.76224463 -0.090518 137 10 SH21935 21935 copy of SH19618 26.449119 75.419646 50.9343825 1.707011045 -0.086852 137 11 SH9869 9869 RUF5-1 RUF5-1 151 167 28.66433 66.770527 47.7174285 1.678677031 0.184925 137 12 SH19630 19630 RNA14 2.2 28.655223 71.770418 50.2128205 1.700814617 0.115021 137 13 SH2436 2436 Phe5 5' flank 31.289039 90.522989 60.906014 1.784660178 -0.024788 137 14 SH966 966 Gly1 3' flank 29.318912 74.533889 51.9264005 1.715388219 0.120719 137 15 SH20158 20158 YDL130W spliced 31.310416 93.955401 62.6329085 1.79680258 -0.081447 137 16 SH7489 7489 snR71 snR71 61 77 35.151545 103.451585 69.301565 1.840743042 -0.177275 137 17 SH4577 4577 U3b (snR17b) U3b 441 457 48.684615 107.511711 78.098163 1.892640819 0.020507 137 18 SH10774 10774 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 756 776 27.146494 76.563926 51.85521 1.714792397 -0.051239 137 19 SH5308 5308 snR30 snR30 391 407 30.627976 86.364324 58.49615 1.767127283 0.019384 137 20 SH2858 2858 Pro7 96-103 + 3' flank 96 30.751134 73.523514 52.137324 1.717148737 0.224248 137 21 SH7132 7132 snR63 snR63 166 182 26.683369 68.784546 47.7339575 1.678827442 0.018495 137 22 SH6538 6538 snR46 181-197 + 3' 181 29.509597 94.504674 62.0071355 1.792441669 -0.169746 137 23 SH13801 13801 MT COB intronic 27.464498 98.040317 27.464498 71.575819 49.5201585 1.694782026 0.035892 137 24 SH16943 16943 YGR027C_7_534779_534126_INTRON_1_312 intron 29.85778 120.94135 29.85778 92.08357 60.970675 1.785121003 -0.113898 137 25 SH6456 6456 snR45 snR45 126 145 29.96959 92.179619 61.0746045 1.785860663 -0.110508 137 26 SH21 21 Ala1 tRNA 1 13 431.126169 728.108788 579.6174785 2.763141473 -0.663575 137 27 SH15266 15266 MT 9S rRNA 9S 24.566595 87.081964 24.566595 63.515369 44.040982 1.643856994 -0.058023 137 28 SH15803 15803 YDL061C_4_341182_340627_INTRON_1_408 intron 41.974789 137.638326 41.974789 96.663537 69.319163 1.84085331 0.108668 137 29 SH14624 14624 MT 21S rRNA Sce1 endonuc 26.101321 100.165598 26.101321 75.064277 50.582799 1.704002857 -0.107812 137 30 SH21731 21731 copy of SH12131 31.520665 93.8717 62.6961825 1.797241098 -0.07211 137 31 SH19489 19489 YPT1 28.704976 91.034125 59.8695505 1.777205997 -0.148866 137 32 SH13657 13657 MT ATP6 ATP6 27.351249 102.829212 27.351249 76.477963 51.914606 1.715289562 -0.035956 137 33 SH7098 7098 snR63 5' - 13 -4 13 33.791396 88.060015 60.9257055 1.784800567 0.117128 137 34 SH21002 21002 YML085C spliced 33.679082 89.087589 61.3833355 1.788050484 0.090724 137 35 SH17027 17027 YGR148C_7_788173_787307_INTRON_1_392 3' exon 29.224341 106.826389 29.224341 78.602048 53.9131945 1.731695066 0.061423 137 36 SH8400 8400 snoRNA cluster 5 snR190 29.15024 96.599408 29.15024 68.449168 48.799704 1.688417188 0.193471 137 37 SH15220 15220 MT COX3 cox3 27.770404 109.342798 27.770404 82.572394 55.171399 1.741713997 -0.084066 137 38 SH13982 13982 MT COB intronic 28.557631 110.560047 28.557631 83.002416 55.7800235 1.746478693 -0.036598 137 39 SH17086 17086 YHL001W_8_104270_105084_INTRON_130_527 intron 33.746733 120.83494 33.746733 88.088207 60.91747 1.784741858 0.115347 137 40 SH934 934 Gly1 5' flank 25.820735 73.658443 49.739589 1.696702192 -0.110484 137 41 SH21529 21529 copy of SH3749 28.408166 85.68599 57.047078 1.756233404 -0.078343 137 42 SH20986 20986 YML067C spliced 28.906239 83.395344 56.1507915 1.749355882 -0.018465 137 43 SH4423 4423 telomerase RNA telomerase 1151 1173 26.717639 77.109839 51.913739 1.715282309 -0.088667 137 44 SH15000 15000 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.64987 109.986097 28.64987 82.336227 55.4930485 1.744238583 -0.022453 137 45 SH6328 6328 snR42 3' 30.494854 88.317995 59.4064245 1.773833414 -0.02105 137 46 SH8197 8197 snoRNA cluster 3; intergenic 25.972929 93.79445 25.972929 68.821521 47.397225 1.675752915 -0.03399 137 47 SH1591 1591 Leu4 3' flank 35.281206 97.481531 66.3813685 1.822046201 -0.052401 137 48 SH6382 6382 snR43 snR43 151 170 27.000165 73.608219 50.304192 1.701604178 -0.023813 137 49 SH7805 7805 snoRNA cluster1 snR75/intergenic 27.761436 106.437089 27.761436 79.675653 53.7185445 1.730124237 -0.04892 137 50 SH1670 1670 Leu6 5' flank 27.987424 84.20124 56.094332 1.748918981 -0.088957 137 51 SH1587 1587 Leu4 106-114 + 3' flank 106 27.601989 80.212558 53.9072735 1.731647367 -0.066497 137 52 SH6999 6999 snR60 snR60 76 92 29.078994 70.853506 49.96625 1.698676757 0.15563 137 53 SH11641 11641 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5091 5104 377.784885 398.547913 388.166399 2.589017939 0.135674 137 54 SH5888 5888 snR35 3' 45.812282 107.089652 76.450967 1.883382983 -0.025261 137 55 SH11257 11257 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3171 3186 39.939095 98.264225 69.10166 1.83948848 0.03389 137 56 SH4557 4557 U3b (snR17b) U3b 341 358 27.470787 75.297512 51.3841495 1.710829173 -0.012308 137 57 SH3925 3925 RNase MRP RNaseMRP 41 62 28.20737 78.576128 53.391749 1.727474148 -0.004982 137 58 SH15419 15419 YBL059W_2_110555_111205_INTRON_287_355 intron/exon 28.135343 102.588728 28.135343 75.453385 51.794364 1.714282505 0.030803 137 59 SH12383 12383 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.0314 118.106688 30.0314 89.075288 59.553344 1.774906153 -0.054756 137 60 SH2369 2369 Phe3 3' flank 34.504788 94.786857 64.6458225 1.810540465 -0.014497 137 61 SH8745 8745 LSR1 / U2 RNA U2 366 382 32.31576 79.415177 55.8654685 1.747143445 0.220947 137 62 SH19400 19400 YPR063C_16_678315_677807_INTRON_42_127 intron 27.793147 103.804444 27.793147 77.011297 52.402222 1.719349703 -0.012716 137 63 SH12739 12739 MT COX1 COX1ai1 27.733291 109.415286 27.733291 82.681995 55.207643 1.741999206 -0.087914 137 64 SH19102 19102 YOR312C_15_901173_900242_INTRON_2_427 intron 27.470191 101.348107 27.470191 74.877916 51.1740535 1.709049819 -0.006988 137 65 SH11131 11131 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2541 2558 150.981386 176.199643 163.5905145 2.213758118 0.338773 137 66 SH2504 2504 Pro1 tRNA 11 28 34.826202 83.380018 59.10311 1.771610334 0.245713 137 67 SH15465 15465 YBL087C_2_60732_59815_INTRON_43_546 intron 27.885413 98.715777 27.885413 71.830364 49.8578885 1.697733882 0.061776 137 68 SH8222 8222 snoRNA cluster 3; snR51 27.739249 107.18283 27.739249 80.443581 54.091415 1.733128342 -0.06003 137 69 SH8206 8206 snoRNA cluster 3; intergenic/snR51 29.624597 98.172012 29.624597 69.547415 49.586006 1.695359129 0.209283 137 70 SH5886 5886 snR35 3' 62.862266 106.841102 84.851684 1.928660466 0.267861 137 71 SH16465 16465 YER093C-A_5_348396_347908_INTRON_125_199 intron 31.850724 119.137579 31.850724 88.286855 60.0687895 1.77864888 0.037719 137 72 SH7147 7147 snR63 241-255 + 3' 241 27.603424 73.013953 50.3086885 1.701642996 0.02652 137 73 SH12295 12295 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.292473 96.69586 30.292473 67.403387 48.84793 1.688846165 0.282265 137 74 SH7499 7499 snR71 3' 32.61207 79.041722 55.826896 1.746843482 0.240455 137 75 SH18211 18211 YML025C_13_225365_224406_INTRON_28_126 5' exon 29.73373 120.941051 29.73373 92.207321 60.9705255 1.785119938 -0.121548 137 76 SH20369 20369 YER133W spliced 28.972986 79.32712 54.150053 1.733598886 0.035954 137 77 SH4338 4338 telomerase RNA telomerase 726 745 30.59517 77.118461 53.8568155 1.73124067 0.166872 137 78 SH18668 18668 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.242433 97.300761 28.242433 70.058328 49.1503805 1.691526884 0.110245 137 79 SH7100 7100 snR63 snR63 6 26 30.64713 70.397182 50.522156 1.703481876 0.26137 137 80 SH7924 7924 snoRNA cluster1 snR72 35.412201 123.696516 35.412201 89.284315 62.348258 1.794824324 0.129134 137 81 SH10124 10124 RUF6 RUF6 466 482 28.640117 80.11037 54.3752435 1.735401215 0.004344 137 82 SH8852 8852 LSR1 / U2 RNA U2 901 917 285.765535 350.957091 318.361313 2.502920287 -0.014207 137 83 SH16435 16435 YER074W_5_306319_307192_INTRON_4_469 intron 28.561453 100.059165 28.561453 72.497712 50.5295825 1.70354571 0.099033 137 84 SH17651 17651 YJR145C_10_702761_701720_INTRON_15_270 intron 26.022314 95.596423 26.022314 70.574109 48.2982115 1.683931049 -0.054462 137 85 SH2380 2380 Phe4 5' flank 25.790147 74.984086 50.3871165 1.702319506 -0.129883 137 86 SH6875 6875 snR56 snR56 6 28 90.024785 209.851097 149.937941 2.175911543 -0.571167 137 87 SH19681 19681 SIR1 2.4 27.725264 77.843372 52.784318 1.722504915 -0.028083 137 88 SH17453 17453 YIL148W_9_68708_69528_INTRON_9_442 intron 28.152662 108.595327 28.152662 81.442665 54.7976635 1.738762041 -0.044514 137 89 SH2048 2048 Lys4 5' flank 28.723972 76.617912 52.670942 1.721571086 0.054481 137 90 SH10890 10890 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1336 1353 5053.670085 3920.92073 4487.295408 3.651984661 -0.101466 137 91 SH17725 17725 YKL156W_11_158616_159214_INTRON_4_353 intron 29.398473 125.258528 29.398473 96.860055 63.129264 1.800230726 -0.212878 137 92 SH4051 4051 SRP RNA SRP RNA 146 158 42.686353 76.924388 59.8053705 1.776740185 0.591391 137 93 SH9738 9738 RUF4 RUF4 466 483 29.079586 114.075846 71.577716 1.854777836 -0.536853 137 94 SH17808 17808 YKR057W_11_551293_551878_INTRON_25_346 5' exon 53.066087 159.593127 53.066087 107.52704 80.2965635 1.904696959 0.097188 137 95 SH9404 9404 RUF1 3' 28.020033 95.384366 61.7021995 1.790300646 -0.253403 137 96 SH4586 4586 U3b (snR17b) 3' 28.770919 75.461896 52.1164075 1.716974471 0.07278 137 97 SH1886 1886 Leu9 3' flank 31.191725 75.558196 53.3749605 1.727337567 0.223721 137 98 SH17799 17799 YKL190W_11_82949_83552_INTRON_53_128 5' exon 42.194457 124.448191 42.194457 83.253734 62.7240955 1.797434407 0.42092 137 99 SH13137 13137 MT COX1 cox1ai3/intronic 27.129179 108.757834 27.129179 82.628655 54.878917 1.739405532 -0.128764 137 100 SH18344 18344 YML124C_13_23684_22049_INTRON_26_323 intron 29.37701 99.423787 29.37701 71.046777 50.2118935 1.700806599 0.172422 137 101 SH10591 10591 RUF8 RUF8 881 898 31.332913 72.400549 51.866731 1.714888877 0.274972 137 102 SH11490 11490 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4336 4353 24033.77807 16275.20487 20154.49147 4.304371845 -0.320369 137 103 SH3157 3157 Ser5 5' flank 30.815285 79.198829 55.007057 1.74041841 0.153728 137 104 SH18004 18004 YLR287C-A_12_713158_712537_INTRON_4_433 intron 31.065664 125.044374 31.065664 94.97871 63.022187 1.79949347 -0.108708 138 2 SH20553 20553 YHL001W spliced 32.536135 98.441669 65.488902 1.816167709 -0.141536 138 3 SH9422 9422 RUF2 5' 31.164971 78.404501 54.784736 1.738659573 0.185082 138 4 SH11790 11790 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5836 5851 3996.511274 1779.246672 2887.878973 3.460578989 0.844077 138 5 SH16279 16279 YDR447C_4_1355542_1354818_INTRON_4_317 intron 25.446604 102.287499 25.446604 77.840895 51.6437495 1.713017766 -0.191588 138 6 SH14829 14829 "MT tRNAs (Lys, Arg1, Gly)" 3' 26.621537 99.909454 26.621537 74.287917 50.454727 1.702901861 -0.05983 138 7 SH14410 14410 MT 21S rRNA 21S rRNA3 138.756173 331.394188 138.756173 193.638015 166.197094 2.220623426 0.07831 138 8 SH7170 7170 snR64 5' 45.934551 103.520977 74.727764 1.873481988 0.045767 138 9 SH13752 13752 MT COB Exon1 28.132905 98.906934 28.132905 71.774029 49.953467 1.698565636 0.079546 138 10 SH9760 9760 RUF4 RUF4 576 592 32.845401 83.619211 58.232306 1.765163989 0.162906 138 11 SH18740 18740 YNL162W_14_331319_332151_INTRON_5_516 intron 26.006307 98.581067 26.006307 73.57476 49.7905335 1.69714678 -0.095602 138 12 SH806 806 Glu1 tRNA 46 58 48.376368 89.433583 68.9049755 1.838250583 0.386854 138 13 SH1678 1678 Leu6 5' flank 27.319198 59.354821 43.3370095 1.636858939 0.209334 138 14 SH16265 16265 YDR424C_4_1319830_1319376_INTRON_26_121 3' exon 26.625736 99.150745 26.625736 73.525009 50.0753725 1.699624189 -0.049621 138 15 SH13213 13213 MT COX1 COX1-ai4 28.830135 103.22007 28.830135 75.389935 52.110035 1.716921365 0.077609 138 16 SH19155 19155 YPL075W_16_412249_415357_INTRON_9_759 intron 28.397371 111.558503 28.397371 84.161132 56.2792515 1.750348313 -0.061081 138 17 SH2081 2081 Lys4 tRNA 71 83 56.764038 99.797029 78.2805335 1.893653777 0.305984 138 18 SH16338 16338 YDR500C_4_1450856_1450201_INTRON_8_396 exon/intron 30.719411 116.232858 30.719411 86.513447 58.616429 1.768019357 0.020705 138 19 SH2876 2876 Pro8 5' flank 31.071744 74.083417 52.5775805 1.720800597 0.236195 138 20 SH19793 19793 Negative Control 31.338445 89.581564 60.4600045 1.781468175 -0.006504 138 21 SH17375 17375 YIL052C_9_257061_256224_INTRON_38_509 intron 34.034958 123.674728 34.034958 90.63977 62.337364 1.794748434 0.064632 138 22 SH6271 6271 snR42 snR42 136 152 27.514955 72.100705 49.80783 1.697297621 0.032415 138 23 SH1625 1625 Leu5 5' flank - tRNA9 9 30.091134 80.846245 55.4686895 1.744047905 0.088309 138 24 SH2324 2324 Phe3 5' flank 30.081499 91.615106 60.8483025 1.784248467 -0.096017 138 25 SH21872 21872 copy of SH18602 30.00589 74.441643 52.2237665 1.717868191 0.165598 138 26 SH17333 17333 YIL018W_9_316766_317930_INTRON_5_404 intron 27.424155 105.690709 27.424155 79.266554 53.3453545 1.727096606 -0.066797 138 27 SH6929 6929 snR58 snR58 6 25 33.844948 90.036345 61.9406465 1.791975734 0.073411 138 28 SH8323 8323 snoRNA cluster4 intergenic 28.818509 108.2511 28.818509 80.432591 54.62555 1.737395823 0.012025 138 29 SH16143 16143 YDR092W_4_629869_630598_INTRON_31_298 intron 29.13767 108.482729 29.13767 80.345059 54.7413645 1.738315619 0.033867 138 30 SH20713 20713 YJL041W spliced 27.606704 74.864647 51.2356755 1.709572466 0.002729 138 31 SH7161 7161 snR63 3' 27.931547 84.740982 56.3362645 1.750788047 -0.09912 138 32 SH5165 5165 snR13 5' 31.029556 75.588445 53.3090005 1.72680054 0.213499 138 33 SH5229 5229 snR30 5' - 13 -4 13 32.761657 92.374249 62.567953 1.796351947 -0.00645 138 34 SH11409 11409 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3931 3944 36.078671 90.862256 63.4704635 1.80257167 0.109496 138 35 SH12798 12798 MT COX1 COX1ai1 26.97052 110.349728 26.97052 84.379208 55.674864 1.745659165 -0.160806 138 36 SH6620 6620 snR48 5' 29.152989 66.445953 47.799471 1.67942309 0.222154 138 37 SH2038 2038 Lys3 3' flank 38.082894 97.534898 67.808896 1.831286674 0.010101 138 38 SH19566 19566 AEP2/ATP13 0.6 28.584054 72.831637 50.7078455 1.705075158 0.096023 138 39 SH3460 3460 Trp1 3' flank 30.521716 88.984305 59.7530105 1.776359791 -0.031499 138 40 SH16569 16569 YER133W_5_432491_433954_INTRON_178_702 intron 28.278267 102.417776 28.278267 75.139509 51.708888 1.713565198 0.044524 138 41 SH16365 16365 YEL012W_5_131772_132551_INTRON_6_128 intron 26.366809 111.028701 26.366809 85.661892 56.0143505 1.748299305 -0.218566 138 42 SH8288 8288 snoRNA cluster4 intergenic 28.842742 112.750077 28.842742 84.907335 56.8750385 1.754921704 -0.040598 138 43 SH2061 2061 Lys4 5' flank 31.019833 83.214712 57.1172725 1.756767461 0.09387 138 44 SH7691 7691 snoRNA cluster1 intergenic 30.813206 104.335164 30.813206 74.521958 52.667582 1.72154338 0.214543 138 45 SH1636 1636 Leu5 tRNA-intron 46 62 26.24975 79.926793 53.0882715 1.724998585 -0.157568 138 46 SH7852 7852 snoRNA cluster1 intergenic 28.410301 112.865558 28.410301 85.455257 56.932779 1.755362383 -0.075502 138 47 SH9093 9093 snR14 / U4 RNA U4 81 93 42.232201 97.853928 70.0430645 1.845365139 0.088453 138 48 SH17411 17411 YIL106W_9_166412_167441_INTRON_21_105 intron 29.168195 99.314164 29.168195 71.145969 50.157082 1.700332263 0.157576 138 49 SH3774 3774 Val4 3' flank 27.569446 79.955676 53.762561 1.730479948 -0.065508 138 50 SH16920 16920 YGL251C_7_31636_27921_INTRON_59_210 intron 30.196234 111.353962 30.196234 82.157728 56.176981 1.749558396 0.077629 138 51 SH707 707 Gln3 66-72 + 3' flank 66 3' flank 29.973472 82.167196 56.070334 1.748733143 0.064701 138 52 SH3083 3083 Ser3 3' flank 27.051613 79.002065 53.026839 1.724495739 -0.089222 138 53 SH1000 1000 Gly2 5' flank - tRNA 7 7 30.752444 88.143051 59.4477475 1.774135404 -0.006725 138 54 SH14143 14143 MT COB intronic 28.066216 120.444174 28.066216 93.377958 60.722087 1.78334669 -0.218311 138 55 SH18616 18616 YNL069C_14_494998_493953_INTRON_29_477 intron/exon 26.468027 102.123318 26.468027 76.655291 51.561659 1.712326882 -0.10107 138 56 SH8933 8933 snR17a / U3a 5' 27.588379 81.024811 54.306595 1.734852574 -0.077514 138 57 SH13337 13337 MT COX1 COX1-ai5a 28.331696 96.148417 28.331696 68.816721 48.5742085 1.686405733 0.133481 138 58 SH18125 18125 YLR388W_12_898158_898821_INTRON_1_488 intron 28.323025 108.786176 28.323025 81.463151 54.893088 1.739517663 -0.033399 138 59 SH17253 17253 YHR097C_8_298611_297387_INTRON_126_249 intron/exon 30.25729 114.874393 30.25729 85.617103 57.9371965 1.762957476 0.016529 138 60 SH13926 13926 MT COB Cytbi3 32.3209 114.250862 32.3209 82.929962 57.625431 1.760614187 0.154165 138 61 SH12212 12212 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.354006 122.066728 32.354006 90.712722 61.533364 1.789110658 0.01677 138 62 SH3332 3332 Thr3 tRNA 6 22 29.996543 86.623774 58.3101585 1.765744222 -0.013138 138 63 SH3972 3972 RNase MRP RNaseMRP 276 288 36.856017 84.651834 60.7539255 1.783574344 0.271483 138 64 SH11872 11872 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6246 6263 11365.92538 8691.016851 10028.47112 4.001234728 -0.305847 138 65 SH14913 14913 MT tRNA Tyr 5' / tRNA 36.510015 134.469737 36.510015 98.959722 67.7348685 1.830812292 -0.054516 138 66 SH9188 9188 snR7 U5 RNA 211-215 + 3' 211 27.550869 73.840233 50.695551 1.704969848 0.012051 138 67 SH17646 17646 YJR145C_10_702761_701720_INTRON_15_270 intron 27.890268 97.302826 27.890268 70.412558 49.151413 1.691536007 0.081241 138 68 SH5559 5559 snR33 snR33 81 97 39.936315 96.889227 68.412771 1.835137182 0.062899 138 69 SH18985 18985 YOR096W_15_505793_506766_INTRON_145_545 intron 27.445828 114.00337 27.445828 87.557542 57.501685 1.759680571 -0.16491 138 70 SH3998 3998 RNase MRP 3' 29.53264 81.022349 55.2774945 1.74254835 0.050832 138 71 SH11203 11203 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2901 2918 55.187315 120.337661 87.762488 1.943308927 -0.086061 138 72 SH13248 13248 MT COX1 COX1-ai4 27.793038 106.907555 27.793038 80.114517 53.9537775 1.732021857 -0.052276 138 73 SH17264 17264 YHR101C_8_315970_314876_INTRON_111_197 3' exon 54.360211 167.736753 54.360211 114.376542 84.3683765 1.926179692 -0.002004 138 74 SH8020 8020 snoRNA cluster 2 snR55 68.911139 204.993628 68.911139 137.082489 102.996814 2.012823791 -0.109912 138 75 SH3520 3520 Tyr1 3' flank 31.699935 89.067394 60.3836645 1.780919465 0.017751 138 76 SH20857 20857 YLR078C spliced 569.918456 567.223158 568.570807 2.754784557 0.094657 138 77 SH13143 13143 MT COX1 intronic 43.535151 144.63548 43.535151 102.100329 72.81774 1.862237196 0.027812 138 78 SH16409 16409 YER056C-A_5_270183_269421_INTRON_38_434 intron 28.052259 119.910959 28.052259 92.8587 60.4554795 1.78143567 -0.210351 138 79 SH12955 12955 MT COX1 COX1ai2 26.288837 107.720463 26.288837 82.431626 54.3602315 1.735281298 -0.18566 138 80 SH17005 17005 YGR148C_7_788173_787307_INTRON_1_392 5' exon 59.69594 171.037397 59.69594 112.341457 86.0186985 1.934592867 0.121608 138 81 SH3779 3779 Val4 3' flank 26.278892 74.431301 50.3550965 1.702043433 -0.086629 138 82 SH16083 16083 YDR025W_4_491510_492319_INTRON_46_384 intron 25.910828 110.813696 25.910828 85.902868 55.906848 1.747465008 -0.254248 138 83 SH17983 17983 YLR275W_12_694378_694800_INTRON_6_95 5' exon 27.526136 119.652035 27.526136 93.125899 60.3260175 1.780504656 -0.240136 138 84 SH9625 9625 RUF4 5' 46.805366 89.405363 68.1053645 1.833181322 0.35929 138 85 SH15691 15691 YBR191W_2_606228_607098_INTRON_12_399 3' exon 26.807997 106.499501 26.807997 80.691504 53.7497505 1.730376453 -0.127452 138 86 SH14013 14013 MT COB intron/exon4 24.844664 95.478795 24.844664 71.634131 48.2393975 1.683401875 -0.157954 138 87 SH12856 12856 MT COX1 COX1ai1 25.108551 106.102555 25.108551 81.994004 53.5512775 1.728769836 -0.267222 138 88 SH16941 16941 YGR027C_7_534779_534126_INTRON_1_312 intron 43.699574 141.184789 43.699574 98.485215 71.0923945 1.851823142 0.104163 138 89 SH15252 15252 MT tRNA fMet 3' 25.925745 108.708629 25.925745 83.782884 54.8543145 1.739210792 -0.228145 138 90 SH21466 21466 copy of SH1002 58.743071 122.399658 90.5713645 1.956990911 -0.059149 138 91 SH3074 3074 Ser3 tRNA 66 78 29.435621 73.935525 51.685573 1.713369335 0.136275 138 92 SH21899 21899 copy of SH19199 26.113634 60.828402 43.471018 1.638199811 0.100053 138 93 SH9909 9909 RUF5-1 RUF5-1 351 370 35.476382 69.670959 52.5736705 1.720768299 0.54746 138 94 SH233 233 Arg3 21-36 21 36 33.437156 102.405025 67.9210905 1.83200465 -0.198342 138 95 SH4623 4623 snR3 snR3 31 48 32.465582 111.692425 72.0790035 1.857808774 -0.400765 138 96 SH5054 5054 snR10 3' 27.000407 89.338054 58.1692305 1.764693319 -0.215895 138 97 SH15263 15263 MT 9S rRNA 9S 29.4172 133.900647 29.4172 105.483447 67.4503235 1.828984037 -0.367967 138 98 SH7687 7687 snoRNA cluster1 intergenic 27.170013 115.35672 27.170013 89.186707 58.17836 1.764761475 -0.202398 138 99 SH10492 10492 RUF8 RUF8 386 403 33.613477 96.863423 65.23845 1.814503634 -0.080873 138 100 SH21024 21024 YMR079W spliced 74.549203 151.188439 112.868821 2.052573989 -0.205472 138 101 SH6668 6668 snR48 3' 27.075993 92.250079 59.663036 1.775705349 -0.247587 138 102 SH9352 9352 RUF1 RUF1 336 354 31.071709 80.961344 56.0165265 1.748316175 0.138575 138 103 SH8435 8435 snoRNA cluster 5 intergenic/snR128 27.595193 101.774702 27.595193 75.179509 51.387351 1.710856231 -0.002102 138 104 SH19074 19074 YOR293W_15_867094_867848_INTRON_53_489 intron 57.737505 190.67566 57.737505 133.938155 95.83783 1.981536972 -0.246784 139 2 SH7778 7778 snoRNA cluster1 intergenic 41.67779 139.572505 41.67779 98.894715 70.2862525 1.846870388 0.055758 139 3 SH14265 14265 MT VAR1 includes 5’ processing site VAR1 26.656849 104.578883 26.656849 78.922034 52.7894415 1.722547067 -0.115906 139 4 SH18349 18349 YML124C_13_23684_22049_INTRON_26_323 intron 31.23239 113.385678 31.23239 83.153288 57.192839 1.757341655 0.104153 139 5 SH10558 10558 RUF8 RUF8 716 732 34.483357 78.582424 56.5328905 1.752301191 0.324146 139 6 SH5387 5387 snR31 snR31 1 18 37.937224 104.094473 71.0158485 1.85135528 -0.127306 139 7 SH13524 13524 MT COX1 intronic 29.444917 116.770941 29.444917 88.326024 58.8854705 1.770008149 -0.068085 139 8 SH3671 3671 Val2 3' flank 25.425705 66.407469 45.916587 1.661969599 -0.039024 139 9 SH7576 7576 snR189 5' 30.3154 88.4747 59.39505 1.773750252 -0.031692 139 10 SH16788 16788 YGL103W_7_310965_311925_INTRON_50_560 intron 30.538958 127.73005 30.538958 98.191092 64.365025 1.808649942 -0.190506 139 11 SH860 860 Glu2 66-72 + 3' flank 66 30.373041 84.793679 57.58336 1.760297002 0.03659 139 12 SH21453 21453 copy of SH379 32.394141 89.28519 60.8396655 1.784186818 0.042967 139 13 SH21625 21625 copy of SH7730 28.158508 89.29278 58.725644 1.768827788 -0.144714 139 14 SH7818 7818 snoRNA cluster1 intergenic 31.866236 194.765078 31.866236 163.898842 97.882539 1.990705226 -1.198052 139 15 SH18197 18197 YML024W_13_225889_226697_INTRON_4_401 intron 30.848002 172.644608 30.848002 142.796606 86.822304 1.938631307 -0.947877 139 16 SH13036 13036 MT COX1 COX1ai2 26.241374 98.171325 26.241374 72.929951 49.5856625 1.69535612 -0.069827 139 17 SH417 417 Asp1 5' flank 26.335655 69.691338 48.0134965 1.681363334 -0.019332 139 18 SH20861 20861 YLR078C spliced 31.351021 95.178112 63.2645665 1.801160537 -0.104788 139 19 SH9159 9159 snR7 U5 RNA U5 66 85 29.452105 84.161568 56.8068365 1.754400605 0.006955 139 20 SH3638 3638 Val2 5' flank 27.28965 80.540853 53.9152515 1.731711635 -0.092029 139 21 SH15649 15649 YBR189W_2_604466_605466_INTRON_8_420 intron 27.311655 100.205681 27.311655 73.894026 50.6028405 1.704174896 -0.005442 139 22 SH5977 5977 snR36 341-355 + 3' 341 360 32.041647 90.572231 61.306939 1.787509633 0.006183 139 23 SH10415 10415 RUF8 RUF8 1 18 27.364642 82.574713 54.9696775 1.740123189 -0.111827 139 24 SH11308 11308 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2/25S 3426 3446 27.21974 81.273166 54.246453 1.734371346 -0.105924 139 25 SH427 427 Asp1 5' flank 29.520424 90.892057 60.2062405 1.779641509 -0.108959 139 26 SH8489 8489 snR19 / U1 RNA 5' 29.518237 78.146878 53.8325575 1.731045013 0.086092 139 27 SH5270 5270 snR30 snR30 201 217 31.606827 94.223905 62.915366 1.798756727 -0.077381 139 28 SH2170 2170 Met2 5' flank 28.020903 80.864513 54.442708 1.735939719 -0.04622 139 29 SH19886 19886 Positive Control 2 38.933612 105.659145 72.2963785 1.859116543 -0.136749 139 30 SH15167 15167 MT tRNA Val 3' 25.591671 101.06874 25.591671 76.477069 51.03437 1.707862758 -0.163679 139 31 SH13366 13366 MT COX1 intronic 28.205757 101.563394 28.205757 74.357637 51.281697 1.709962388 0.050159 139 32 SH5932 5932 snR36 snR36 116 132 33.820092 79.865649 56.8428705 1.754676001 0.273094 139 33 SH3358 3358 Thr3 3' flank 27.547354 79.788163 53.6677585 1.729713457 -0.064919 139 34 SH13521 13521 MT COX1 intronic 27.44038 110.865319 27.44038 84.424939 55.9326595 1.74766547 -0.128806 139 35 SH7619 7619 snR189 snR189 166 181 31.966379 91.563105 61.764742 1.790740632 -0.013797 139 36 SH2020 2020 Lys3 tRNA-intron/exon 46 62 29.367608 90.580918 59.974263 1.77796492 -0.110601 139 37 SH7616 7616 snR189 snR189 151 169 29.053355 83.60828 56.3308175 1.750746054 -0.011453 139 38 SH4344 4344 telomerase RNA telomerase 756 777 28.660142 80.413192 54.536667 1.736688593 0.001884 139 39 SH21434 21434 oligo-dT; WTP_216 24015.09535 16562.69024 20288.8928 4.307258347 -0.34904 139 40 SH11005 11005 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1911 1928 17419.88721 9970.367983 13695.1276 4.136566083 0.033836 139 41 SH16324 16324 YDR471W_4_1401759_1402553_INTRON_32_415 intron 32.923701 117.814462 32.923701 85.890761 59.407231 1.77383931 0.12463 139 42 SH9471 9471 RUF2 RUF2 196 212 33.202166 74.294431 53.7482985 1.73036472 0.358299 139 43 SH18767 18767 YNL246W_14_185459_186348_INTRON_33_127 intron 30.866515 114.509869 30.866515 84.643354 57.7549345 1.761589096 0.060905 139 44 SH11361 11361 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3691 3708 39.893825 93.785847 66.839836 1.825035376 0.12917 139 45 SH18439 18439 YMR142C_13_551206_550205_INTRON_5_406 intron 28.585828 118.063852 28.585828 90.478024 59.531926 1.774749933 -0.144954 139 46 SH6337 6337 snR43 5' 28.59186 92.845606 60.718733 1.783322701 -0.184632 139 47 SH150 150 Arg1 3' flank 28.691133 82.750241 55.720687 1.746016462 -0.024763 139 48 SH8689 8689 LSR1 / U2 RNA U2 86 107 29.10233 78.085592 53.593961 1.729115856 0.06014 139 49 SH2807 2807 Pro6 3' flank 31.885009 86.782587 59.333798 1.773302149 0.065744 139 50 SH18921 18921 YOL121C_15_92849_92025_INTRON_21_410 intron 27.406728 98.091973 27.406728 71.685245 49.5459865 1.69500848 0.030371 139 51 SH11578 11578 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4776 4789 34.261098 93.561191 63.9111445 1.805576595 0.005875 139 52 SH8029 8029 snoRNA cluster 2 snR55 26.975622 108.407124 26.975622 82.431502 54.703562 1.738015606 -0.137067 139 53 SH10010 10010 RUF5-1 3' 31.056912 87.758911 59.4079115 1.773844285 0.013218 139 54 SH13984 13984 MT COB intronic 6432.115141 11333.35259 6432.115141 4902.237453 5667.176297 3.753366723 -0.14125 139 55 SH12380 12380 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.988807 121.697359 35.988807 86.708552 61.3486795 1.787805219 0.202383 139 56 SH21184 21184 YOL047C spliced 28.785741 92.529942 60.6578415 1.782886952 -0.170318 139 57 SH18977 18977 YOR096W_15_505793_506766_INTRON_145_545 intron 31.793301 116.164107 31.793301 85.370806 58.5820535 1.767764591 0.087262 139 58 SH5127 5127 snR11 snR11 236 252 28.293479 84.987566 56.6405225 1.753127251 -0.077771 139 59 SH18885 18885 YOL047C_15_242745_241612_INTRON_244_306 intron 30.48083 121.428866 30.48083 91.948036 61.214433 1.786853831 -0.083978 139 60 SH9459 9459 RUF2 RUF2 136 155 27.998598 79.497092 53.747845 1.730361056 -0.030646 139 61 SH15755 15755 YCR031C_3_178212_177492_INTRON_8_314 intron 27.971563 118.742962 27.971563 91.771399 59.871481 1.777220001 -0.195986 139 62 SH9358 9358 RUF1 RUF1 366 385 27.737533 75.353576 51.5455545 1.712191216 0.005298 139 63 SH14042 14042 MT COB Cytbi4 28.423936 116.866051 28.423936 89.442115 58.9330255 1.770358737 -0.134742 139 64 SH10791 10791 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 841 861 29.155759 75.511147 52.333453 1.718779391 0.097162 139 65 SH7022 7022 snR62 5' 29.292565 82.378822 55.8356935 1.746911915 0.018829 139 66 SH13824 13824 MT COB Cytbi2 27.605097 98.4833 27.605097 71.878203 49.74165 1.696720187 0.04168 139 67 SH21100 21100 YNL050C spliced 28.028077 76.719919 52.373998 1.719115727 0.006939 139 68 SH4511 4511 U3b (snR17b) U3b 111 127 30.280354 86.854417 58.5673855 1.767655837 -0.004647 139 69 SH7376 7376 snR68 snR68 101 117 55.478872 127.759123 91.6189975 1.961985535 -0.196951 139 70 SH17615 17615 YJR021C_10_469271_468247_INTRON_317_396 intron 27.168264 95.236693 27.168264 69.068429 48.1183465 1.682310695 0.049225 139 71 SH9770 9770 RUF4 RUF4 626 638 41.683313 86.804915 64.244114 1.807833344 0.324819 139 72 SH4647 4647 snR3 snR3 151 168 27.765276 76.062433 51.9138545 1.715283276 -0.002193 139 73 SH12603 12603 MT_15S MT_15S 28.083071 94.812735 28.083071 67.729664 47.9063675 1.680393242 0.131785 139 74 SH2050 2050 Lys4 5' flank 30.239467 70.707734 50.4736005 1.703064286 0.231731 139 75 SH8203 8203 snoRNA cluster 3; intergenic 27.045537 106.316988 27.045537 80.271451 53.658494 1.729638479 -0.105605 139 76 SH16640 16640 YFR024C-A_6_203420_201947_INTRON_48_165 intron 56.915698 165.729731 56.915698 109.814033 83.3648655 1.920983054 0.120417 139 77 SH769 769 Gln4 3' flank 34.517247 87.801373 61.15931 1.786462577 0.141266 139 78 SH14748 14748 MT ORF11; tRNA Leu; tRNA Gln ORF11 30.480286 109.712708 30.480286 80.232422 55.356354 1.743167478 0.120151 139 79 SH1756 1756 Leu7 76-84 + 3' flank 76 26.474618 71.707149 49.0908835 1.691000848 -0.036559 139 80 SH10260 10260 RUF7 5' 31.041862 83.16777 57.104816 1.756672737 0.095693 139 81 SH9757 9757 RUF4 RUF4 561 577 28.461418 84.284754 56.373086 1.75107181 -0.058306 139 82 SH9544 9544 RUF3 RUF3 106 122 43.689233 88.491028 66.0901305 1.820136609 0.323808 139 83 SH12761 12761 MT COX1 COX1ai1 34.819544 126.16967 34.819544 92.350126 63.584835 1.803353549 0.046151 139 84 SH11074 11074 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2256 2274 24.419144 68.522902 46.471023 1.667182233 -0.146393 139 85 SH2670 2670 Pro4 tRNA 16 32 48.693188 94.707484 71.700336 1.855521191 0.276234 139 86 SH884 884 Glu3 5' flank 37.087856 93.889591 65.4887235 1.816166525 0.066521 139 87 SH5416 5416 snR31 snR31 146 160 902.03898 825.499148 863.769064 2.936397646 0.097323 139 88 SH8149 8149 snoRNA cluster 3; intergenic 27.280543 94.536441 27.280543 68.255898 47.7682205 1.679139063 0.068523 139 89 SH18844 18844 YNL312W_14_48286_49215_INTRON_8_115 intron 110.190403 292.226632 110.190403 183.036229 146.613316 2.166173416 -0.100083 139 90 SH7321 7321 snR66 3' 27.967454 65.842083 46.9047685 1.671216997 0.150963 139 91 SH1345 1345 Ile3 tRNA 106 120 31.960305 85.432846 58.6965755 1.768612764 0.093151 139 92 SH1354 1354 Ile3 3' flank 26.68608 76.101737 51.3939085 1.710911647 -0.078315 139 93 SH3686 3686 Val3 5' flank 34.158953 102.641981 68.400467 1.835059067 -0.184781 139 94 SH15339 15339 YAL030W_1_87288_87754_INTRON_103_215 intron 80.773732 245.840344 80.773732 166.066612 123.420172 2.091386147 -0.28637 139 95 SH6479 6479 snR45 3' 78.860504 228.477405 153.6689545 2.186586137 -0.872013 139 96 SH773 773 Gln4 3' flank 29.262247 89.360335 59.311291 1.773137377 -0.094424 139 97 SH18697 18697 YNL130C_14_381156_379555_INTRON_30_470 5' exon 29.628555 104.611546 29.628555 75.982991 52.805773 1.722681404 0.121235 139 98 SH18734 18734 YNL162W_14_331319_332151_INTRON_5_516 5' exon 27.331795 104.265412 27.331795 77.933617 52.632706 1.721255699 -0.056174 139 99 SH3225 3225 Thr1 5' flank 31.416743 83.69408 57.5554115 1.760086163 0.102001 139 100 SH6614 6614 snR47 3' 27.072462 69.275064 48.173763 1.682810572 0.039556 139 101 SH20735 20735 YJL189W spliced 29.053219 80.747343 54.900281 1.739574567 0.023398 139 102 SH3860 3860 RNaseP RNaseP 266 280 34.979429 79.772149 57.375789 1.758728671 0.320018 139 103 SH20800 20800 YKL157W spliced 30.073452 101.699375 65.8864135 1.818795868 -0.274923 139 104 SH4238 4238 telomerase RNA telomerase 226 243 26.3924 79.480484 52.936442 1.723754748 -0.14175 140 2 SH17801 17801 YKL190W_11_82949_83552_INTRON_53_128 exon/intron 26.724187 112.28484 26.724187 86.560653 56.64242 1.7531418 -0.203649 140 3 SH7941 7941 snoRNA cluster1 3' 26.971951 94.978709 26.971951 69.006758 47.9893545 1.681144908 0.036116 140 4 SH21531 21531 copy of SH3751 26.879307 85.063853 55.97158 1.747967567 -0.17528 140 5 SH10373 10373 RUF7 RUF7 476 488 37.527666 105.332849 71.4302575 1.853882216 -0.160631 140 6 SH16288 16288 YDR450W_4_1359912_1360787_INTRON_48_482 exon/intron 26.803976 97.89815 26.803976 72.094174 49.449075 1.694158172 -0.017914 140 7 SH2612 2612 Pro3 tRNA 11 28 29.463953 80.843298 55.1536255 1.741574066 0.04866 140 8 SH21344 21344 YPR098C spliced 139.25329 175.40842 157.330855 2.196813903 0.250034 140 9 SH1918 1918 Lys1 tRNA 46 60 247.725253 291.200398 269.4628255 2.430498859 0.109013 140 10 SH3366 3366 Thr4 5' flank 28.422312 84.949565 56.6859385 1.753475341 -0.068763 140 11 SH4001 4001 RNase MRP 3' 28.345816 92.319031 60.3324235 1.780550771 -0.187401 140 12 SH6478 6478 snR45 3' 27.02119 79.447539 53.2343645 1.726192074 -0.096972 140 13 SH3957 3957 RNase MRP RNaseMRP 201 216 32.391387 108.04906 70.2202235 1.846462207 -0.334445 140 14 SH4833 4833 snR8 5' 27.942858 94.922774 61.432816 1.788400423 -0.24959 140 15 SH13720 13720 MT tRNAGlu (and 5' processing site for COB) 3' 25.664513 91.508033 25.664513 66.84352 46.2540165 1.665149451 -0.028201 140 16 SH2153 2153 Met1 3' flank 34.612208 84.77492 59.693564 1.775927509 0.211798 140 17 SH4483 4483 U3b (snR17b) 5' 28.330325 70.671384 49.5008545 1.694612696 0.107869 140 18 SH10950 10950 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1636 1656 304.192244 375.802281 339.9972625 2.53147542 -0.045518 140 19 SH14352 14352 MT ORF9 and ORF10 (hypothetical) 5' 27.459744 103.053234 27.459744 76.59349 52.026617 1.716225587 -0.030008 140 20 SH14314 14314 MT VAR1 includes 5’ processing site VAR1 27.552844 104.860255 27.552844 78.307411 52.9301275 1.72370294 -0.045788 140 21 SH14237 14237 MT tRNA Ser 5' 39.023106 142.61859 39.023106 104.595484 71.809295 1.856180663 -0.113991 140 22 SH17060 17060 YGR214W_7_920570_921783_INTRON_91_545 intron 29.213566 108.783125 29.213566 80.569559 54.8915625 1.739505593 0.035975 140 23 SH13155 13155 MT COX1 intronic 26.484653 95.50944 26.484653 70.024787 48.25472 1.6835398 -0.013048 140 24 SH12373 12373 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.322431 127.04522 35.322431 92.722789 64.02261 1.806333375 0.050229 140 25 SH11690 11690 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5336 5349 32033.00005 15769.73331 23901.36668 4.378422735 0.104712 140 26 SH14882 14882 MT tRNA Ala tRNA 29.282763 110.827357 29.282763 82.544594 55.9136785 1.747518065 0.016186 140 27 SH14100 14100 MT COB Cytbi4 29.451324 99.600769 29.451324 71.149445 50.3003845 1.701571305 0.175737 140 28 SH17078 17078 YGR225W_7_945138_946919_INTRON_1184_1276 intron/exon 29.463036 112.064502 29.463036 83.601466 56.532251 1.752296279 0.015012 140 29 SH18465 18465 YMR143W_13_551927_552902_INTRON_25_568 intron 32.13494 124.116191 32.13494 92.981251 62.5580955 1.796283519 -0.036259 140 30 SH1298 1298 Ile2 3' flank 28.049348 77.670625 52.8599865 1.723127048 -0.003962 140 31 SH8932 8932 snR17a / U3a 5' 28.352547 81.67626 55.0144035 1.740476408 -0.034052 140 32 SH12233 12233 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.02175 113.395762 33.02175 81.374012 57.197881 1.75737994 0.212177 140 33 SH14206 14206 MT COB 3' 28.034849 111.245017 28.034849 84.210168 56.1225085 1.749137074 -0.085873 140 34 SH6799 6799 snR52 5' 27.958957 82.606235 55.282596 1.742588429 -0.071726 140 35 SH12872 12872 MT COX1 COX1ai1 30.09971 122.520605 30.09971 93.420895 61.7603025 1.790709414 -0.125402 140 36 SH17787 17787 YKL186C_11_93537_92746_INTRON_71_233 5' exon 32.074181 116.771156 32.074181 85.696975 58.885578 1.770008942 0.093136 140 37 SH21086 21086 YMR292W spliced 30.536679 76.415674 53.4761765 1.728160348 0.172433 140 38 SH14230 14230 MT ATP9 3' 26.605721 105.740242 26.605721 80.134521 53.370121 1.727298187 -0.134788 140 39 SH19485 19485 YPT1 36.049812 99.45339 67.751601 1.830919562 -0.075217 140 40 SH21442 21442 TH294 - control cDNA - flipped; WTP_224 41.379012 92.225663 66.8023375 1.824791659 0.193846 140 41 SH13929 13929 MT COB Cytbi3 26.116036 95.856515 26.116036 70.740479 48.4282575 1.685098843 -0.049798 140 42 SH15663 15663 YBR189W_2_604466_605466_INTRON_8_420 intron 28.801001 104.926206 28.801001 77.125205 52.963103 1.723973422 0.05292 140 43 SH272 272 Arg4 5' flank 26.638682 76.757344 51.698013 1.713473851 -0.08997 140 44 SH5790 5790 snR35 snR35 136 150 26.642941 82.489985 54.566463 1.736925804 -0.161159 140 45 SH3279 3279 Thr2 5' flank - tRNA10 10 34.637556 91.13846 62.888008 1.798567839 0.068491 140 46 SH19123 19123 YPL031C_16_493033_492014_INTRON_18_119 3' exon 31.107154 116.468581 31.107154 86.361427 58.7342905 1.768891727 0.040214 140 47 SH6577 6577 snR47 5' - 8 -9 8 31.142873 70.812196 50.9775345 1.707378827 0.285719 140 48 SH2166 2166 Met2 5' flank 26.818943 77.482633 52.150788 1.717260875 -0.086054 140 49 SH10443 10443 RUF8 RUF8 141 156 38.610766 103.19407 70.902418 1.850661046 -0.094908 140 50 SH15035 15035 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.787081 97.864318 25.787081 73.077237 49.432159 1.694009579 -0.105394 140 51 SH9123 9123 snR14 / U4 RNA 3' 31.241932 86.52112 58.881526 1.769979057 0.043142 140 52 SH13809 13809 MT COB Cytbi2 26.495648 93.406417 26.495648 67.910769 47.2032085 1.67397152 0.017167 140 53 SH16163 16163 YDR129C_4_715372_713333_INTRON_22_132 3' exon 28.524533 94.458882 28.524533 66.934349 47.729441 1.678786348 0.173158 140 54 SH3311 3311 Thr3 5' flank 28.530975 82.073145 55.30206 1.742741309 -0.027085 140 55 SH20045 20045 YBR189W spliced 29.101073 89.383952 59.2425125 1.772633469 -0.102225 140 56 SH15175 15175 MT COX3 5' 28.752291 98.785278 28.752291 71.032987 49.892639 1.698036476 0.131444 140 57 SH16482 16482 YER102W_5_362729_363698_INTRON_1_360 intron 32.882903 124.431326 32.882903 92.548423 62.715663 1.797376018 -0.007118 140 58 SH4809 4809 snR5 3' 28.235999 71.29353 49.7647645 1.696921953 0.093035 140 59 SH13688 13688 MT ORF 5 (hypothetical) ORF5 35.414799 113.709508 35.414799 79.294709 57.354754 1.758569421 0.34586 140 60 SH14880 14880 MT tRNA Ala tRNA 28.191754 105.791677 28.191754 78.599923 53.3958385 1.727507411 -0.006328 140 61 SH2463 2463 Phe5 86-91 + 3' flank 86 28.159172 72.703011 50.4310915 1.702698368 0.069003 140 62 SH12897 12897 MT COX1 intronic 30.229854 114.248391 30.229854 85.018537 57.6241955 1.760604875 0.026168 140 63 SH16123 16123 YDR064W_4_579453_580447_INTRON_22_560 intron 32.054121 121.277913 32.054121 90.223792 61.1389565 1.786318022 0.012667 140 64 SH942 942 Gly1 5' flank 29.294105 75.974766 52.6344355 1.72126997 0.099953 140 65 SH4537 4537 U3b (snR17b) U3b 241 257 41.399215 109.530938 75.4650765 1.877746017 -0.157795 140 66 SH1485 1485 Leu2 3' flank 28.956876 92.721552 60.839214 1.784183595 -0.165585 140 67 SH21365 21365 Ile2_3 spliced 69.602787 123.2382 96.4204935 1.98416935 0.097025 140 68 SH14107 14107 MT COB cytbi4/intronic 25.358835 99.652886 25.358835 75.294051 50.326443 1.701796236 -0.166321 140 69 SH6413 6413 snR45 5' 27.139091 85.058585 56.098838 1.748953866 -0.157095 140 70 SH3168 3168 Ser5 5' flank 29.147358 76.756781 52.9520695 1.723882938 0.080238 140 71 SH13380 13380 MT COX1 Exon 5b 29.353247 103.964135 29.353247 75.610888 52.4820675 1.720010935 0.10856 140 72 SH9512 9512 RUF3 5' 27.568114 74.068787 50.8184505 1.706021419 0.010291 140 73 SH9793 9793 RUF4 RUF4 741 759 27.959358 88.740954 58.350156 1.766042021 -0.144624 140 74 SH1136 1136 His1 5' flank 30.320896 89.257834 59.789365 1.776623941 -0.045082 140 75 SH14276 14276 MT VAR1 includes 5’ processing site VAR1 29.813673 127.552166 29.813673 98.738493 64.276083 1.808049403 -0.223822 140 76 SH20937 20937 YLR406C spliced 33.664333 86.808226 60.2362795 1.77985814 0.137967 140 77 SH9401 9401 RUF1 3' 30.880267 86.049038 58.4646525 1.766893373 0.036022 140 78 SH19859 19859 Negative Control 28.79112 79.385336 54.088228 1.733102754 0.023355 140 79 SH16670 16670 YFR032C-A_6_223758_223245_INTRON_1_331 intron 29.025015 109.962635 29.025015 81.93762 55.4813175 1.744146766 0.006917 140 80 SH7710 7710 snoRNA cluster1 snR77 38.231482 138.578751 38.231482 101.347269 69.7893755 1.843789312 -0.065782 140 81 SH3850 3850 RNaseP RNaseP 216 228 28.834579 79.207312 54.0209455 1.732562181 0.028445 140 82 SH19285 19285 YPL143W_16_282121_282969_INTRON_20_544 3' exon 28.519416 110.453664 28.519416 82.934248 55.726832 1.746064355 -0.038298 140 83 SH15379 15379 YBL027W_2_168385_169338_INTRON_3_386 intron 25.770404 94.567316 25.770404 69.796912 47.783658 1.679279393 -0.062569 140 84 SH16959 16959 YGR029W_7_543547_544199_INTRON_87_169 3' exon 33.831395 122.17193 33.831395 89.340535 61.585965 1.789481751 0.088823 140 85 SH2620 2620 Pro3 tRNA-intron 51 67 60.155821 161.759855 110.957838 2.045157986 -0.55672 140 86 SH8774 8774 LSR1 / U2 RNA U2 511 527 26.893183 75.202633 51.047908 1.707977949 -0.052022 140 87 SH21619 21619 copy of SH7514 38.187014 93.421203 65.8041085 1.81825301 0.10123 140 88 SH11436 11436 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4066 4081 59.173363 100.131024 79.6521935 1.90119774 0.336453 140 89 SH12109 12109 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7431 7448 34.36576 89.568565 61.9671625 1.79216161 0.097041 140 90 SH8183 8183 snoRNA cluster 3; snR70 60.06575 318.403661 60.06575 259.337911 159.7018305 2.203309894 -1.404809 140 91 SH13427 13427 MT COX1 intronic 27.712307 114.087046 27.712307 87.374739 57.543523 1.759996447 -0.144611 140 92 SH20317 20317 YER044C-A spliced 29.388811 86.71791 58.0533605 1.763827365 -0.042213 140 93 SH17927 17927 YLR078C_12_286560_285737_INTRON_4_92 intron 32.89593 157.151876 32.89593 125.255946 79.075938 1.898044352 -0.62633 140 94 SH21303 21303 YPL218W spliced 29.159676 126.773786 77.966731 1.891909325 -0.750368 140 95 SH5926 5926 snR36 snR36 86 104 166.927334 210.816072 188.871703 2.276166896 0.156907 140 96 SH14180 14180 MT COB Exon6 28.860979 101.361092 28.860979 73.500113 51.180546 1.709104915 0.105042 140 97 SH8436 8436 snoRNA cluster 5 intergenic/snR128 27.097412 98.911766 27.097412 72.814354 49.955883 1.69858664 -0.006484 140 98 SH13343 13343 MT COX1 COX1-ai5a 27.079481 97.953025 27.079481 71.873544 49.4765125 1.694399079 0.00472 140 99 SH16657 16657 YFR032C-A_6_223758_223245_INTRON_1_331 5' exon 35.50811 127.355281 35.50811 92.847171 64.1776405 1.807383746 0.051988 140 100 SH8867 8867 LSR1 / U2 RNA U2 976 992 31.19767 84.685634 57.941652 1.762990873 0.074416 140 101 SH16408 16408 YER056C-A_5_270183_269421_INTRON_38_434 intron 28.845586 107.77834 28.845586 79.932754 54.38917 1.735512431 0.020036 140 102 SH9588 9588 RUF3 RUF3 326 347 27.977116 71.144297 49.5607065 1.695137489 0.077308 140 103 SH10908 10908 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1426 1442 24720.88624 17750.84546 21235.86585 4.327069973 -0.420633 140 104 SH5494 5494 snR32 snR32 131 143 29.981945 81.689172 55.8355585 1.746910865 0.071075 141 2 SH16772 16772 YGL103W_7_310965_311925_INTRON_50_560 intron 29.730086 107.757742 29.730086 79.027656 54.378871 1.735430187 0.088344 141 3 SH4920 4920 snR9 snR9 6 27 33.956644 84.659628 59.308136 1.773114275 0.18831 141 4 SH11889 11889 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6331 6348 429.907129 309.952994 369.9300615 2.568119625 0.7054 141 5 SH18203 18203 YML024W_13_225889_226697_INTRON_4_401 intron 26.732592 92.918912 26.732592 67.18632 46.959456 1.671723057 0.044604 141 6 SH5500 5500 snR32 snR32 161 177 120.024329 226.302508 173.1634185 2.238456151 -0.358531 141 7 SH13511 13511 MT COX1 intronic 29.276421 114.61992 29.276421 86.343499 57.80996 1.762002669 -0.040647 141 8 SH15305 15305 YAL001C_1_151163_147591_INTRON_71_160 intron 27.5402 101.095687 27.5402 74.555487 51.0478435 1.7079774 0.002055 141 9 SH11546 11546 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4616 4629 86.64433 111.522818 99.083574 1.996001663 0.509025 141 10 SH4568 4568 U3b (snR17b) U3b 396 412 30.473004 76.505032 53.489018 1.728264625 0.16733 141 11 SH7942 7942 snoRNA cluster1 3' 28.196516 102.405059 28.196516 75.208543 51.7025295 1.713511791 0.038149 141 12 SH13477 13477 MT COX1 intronic 28.002724 99.838245 28.002724 72.835521 50.4191225 1.702595283 0.056526 141 13 SH11927 11927 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6521 6534 29.930476 90.273723 60.1020995 1.778889643 -0.079936 141 14 SH13905 13905 MT COB Exon3 36.293494 150.526382 36.293494 115.232888 75.763191 1.879458258 -0.373429 141 15 SH2896 2896 Pro8 tRNA 1 13 219.640018 313.533671 266.5868445 2.425838714 -0.162493 141 16 SH4618 4618 snR3 snR3 6 24 42.664818 100.687558 71.676188 1.8553749 0.038766 141 17 SH12559 12559 MT_15S MT_15S 136.460246 363.325819 136.460246 227.865573 182.1629095 2.260459954 -0.216521 141 18 SH8913 8913 LSR1 / U2 RNA 3' 28.740493 77.887926 53.3142095 1.726842974 0.039105 141 19 SH19099 19099 YOR312C_15_901173_900242_INTRON_2_427 intron 29.594753 107.93456 29.594753 79.339807 54.46728 1.736135688 0.075801 141 20 SH6396 6396 snR43 3' 27.436943 73.100392 50.2686675 1.701297373 0.013734 141 21 SH14049 14049 MT COB Cytbi4 27.046049 108.773487 27.046049 82.727438 54.8867435 1.739467464 -0.135743 141 22 SH9743 9743 RUF4 RUF4 491 507 27.509757 70.780849 49.145303 1.691482017 0.04978 141 23 SH11507 11507 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4421 4441 293.897056 329.093386 311.495221 2.493451388 0.125388 141 24 SH18825 18825 YNL302C_14_62942_61957_INTRON_21_571 intron 48.502897 150.109916 48.502897 102.607019 75.554958 1.878262968 0.110384 141 25 SH8160 8160 snoRNA cluster 3; snR70 30.839316 114.646965 30.839316 84.807649 57.8234825 1.762104244 0.056726 141 26 SH17558 17558 YJL189W_10_75932_76473_INTRON_7_392 intron 29.372307 115.045881 29.372307 86.673574 58.0229405 1.763599734 -0.042173 141 27 SH13268 13268 MT COX1 intronic 29.729479 116.77165 29.729479 88.042171 58.885825 1.770010764 -0.050232 141 28 SH15787 15787 YDL029W_4_399336_400634_INTRON_23_145 intron 32.133285 108.01151 32.133285 76.878225 54.505755 1.73644236 0.262415 141 29 SH3951 3951 RNase MRP RNaseMRP 171 187 29.963831 74.945127 52.454479 1.719782578 0.156206 141 30 SH6459 6459 snR45 snR45 141 158 30.409293 87.182176 58.7957345 1.76934582 -0.004787 141 31 SH18818 18818 YNL302C_14_62942_61957_INTRON_21_571 intron 28.319047 106.663396 28.319047 79.344349 53.831698 1.731038079 -0.007278 141 32 SH1445 1445 Leu2 5' flank - tRNA12 12 76.518513 153.871284 115.1948985 2.061433246 -0.209462 141 33 SH21342 21342 YPR098C spliced 30.496549 74.398814 52.4476815 1.719726295 0.196735 141 34 SH16836 16836 YGL178W_7_167356_170575_INTRON_4_643 intron 29.25818 105.367704 29.25818 77.109524 53.183852 1.725779789 0.082798 141 35 SH5223 5223 snR30 5' 27.975371 74.926951 51.451161 1.711395179 0.027069 141 36 SH15066 15066 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.732922 104.032713 27.732922 77.299791 52.5163565 1.720294588 -0.020547 141 37 SH20850 20850 YLR061W spliced 34.563015 88.923805 61.74341 1.790590611 0.116604 141 38 SH18805 18805 YNL301C_14_64561_63569_INTRON_113_544 intron 26.961031 104.783877 26.961031 78.822846 52.8919385 1.723389484 -0.093268 141 39 SH5864 5864 snR35 snR35 506 522 28.475282 86.447853 57.4615675 1.759377469 -0.08276 141 40 SH12847 12847 MT COX1 COX1ai1 28.154592 116.114738 28.154592 88.960146 58.557369 1.767581556 -0.139127 141 41 SH18709 18709 YNL130C_14_381156_379555_INTRON_30_470 intron 28.627768 109.906512 28.627768 82.278744 55.453256 1.743927051 -0.023208 141 42 SH3478 3478 Tyr1 5' flank 29.09853 88.78578 58.942155 1.77042601 -0.091954 141 43 SH16466 16466 YER093C-A_5_348396_347908_INTRON_125_199 intron/exon 36.156858 123.685743 36.156858 88.528885 62.3428715 1.794786802 0.164176 141 44 SH7139 7139 snR63 snR63 201 218 29.29265 80.801174 55.046912 1.740732961 0.038195 141 45 SH1017 1017 Gly2 3' flank 24.638786 78.393325 51.5160555 1.711942602 -0.260502 141 46 SH12256 12256 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.162277 116.412094 31.162277 86.249817 58.706047 1.768682838 0.044584 141 47 SH11893 11893 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6351 6368 227.01172 260.339875 243.6757975 2.386812396 0.183521 141 48 SH15720 15720 YBR255C-A_2_727032_726576_INTRON_64_157 exon/intron 28.813235 116.717945 28.813235 88.90471 58.8589725 1.769812676 -0.107212 141 49 SH12976 12976 MT COX1 COX1ai2 26.694557 103.760324 26.694557 78.065767 52.380162 1.719166837 -0.10232 141 50 SH13619 13619 MT ATP6 5' / ATP6 26.541863 99.963317 26.541863 74.421454 50.4816585 1.703133615 -0.067326 141 51 SH5808 5808 snR35 snR35 226 244 39.903523 104.525699 72.214611 1.858625076 -0.094258 141 52 SH17353 17353 YIL018W_9_316766_317930_INTRON_5_404 3' exon 32.764321 122.817018 32.764321 91.052697 61.908509 1.791750345 0.022881 141 53 SH17625 17625 YJR094W-A_10_608000_608553_INTRON_3_277 intron 32.53795 117.820163 32.53795 86.282213 59.4100815 1.773860148 0.101821 141 54 SH10708 10708 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 426 441 39.415261 101.328747 70.372004 1.847399919 -0.040316 141 55 SH17174 17174 YHR021C_8_148660_147862_INTRON_4_553 intron 26.581195 109.857626 26.581195 84.276431 55.428813 1.743735578 -0.186982 141 56 SH8261 8261 snoRNA cluster4 5'/snR67 29.824077 110.797332 29.824077 81.973255 55.898666 1.747401444 0.057652 141 57 SH18621 18621 YNL096C_14_444312_443395_INTRON_145_489 exon/intron 28.100725 117.428796 28.100725 90.328071 59.214398 1.772427318 -0.165296 141 58 SH4471 4471 U3b (snR17b) 5' 28.269459 79.520021 53.89474 1.731546381 -0.012794 141 59 SH10501 10501 RUF8 RUF8 431 450 30.581832 79.880897 55.2313645 1.742185773 0.130814 141 60 SH11053 11053 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2151 2164 4704.648564 3510.348995 4107.49878 3.613577443 -0.019416 141 61 SH21777 21777 copy of SH14041 28.099071 84.721594 56.4103325 1.75135866 -0.087624 141 62 SH4531 4531 U3b (snR17b) U3b 211 226 35.218654 87.539122 61.378888 1.788019016 0.164535 141 63 SH2364 2364 Phe3 3' flank 216.056315 245.517795 230.787055 2.363211445 0.21899 141 64 SH16672 16672 YFR032C-A_6_223758_223245_INTRON_1_331 intron 29.869947 102.829205 29.869947 73.959258 51.9146025 1.715289533 0.163551 141 65 SH12458 12458 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank / 5S 529.868662 1124.799358 529.868662 595.930696 562.899679 2.750431001 -0.077975 141 66 SH10196 10196 RUF6 RUF6 826 845 28.02281 82.539089 55.2809495 1.742575494 -0.066614 141 67 SH2241 2241 Phe1 81-92 + 3' flank 81 98 27.955733 73.808435 50.882084 1.706564891 0.040559 141 68 SH19782 19782 Negative Control 33.1797 89.446887 61.3132935 1.787554645 0.069782 141 69 SH3556 3556 Tyr2 tRNA-intron/exon 51 67 42.910535 102.54897 72.7297525 1.86171211 0.006533 141 70 SH17407 17407 YIL069C_9_232366_231550_INTRON_4_412 3' exon 28.652848 106.859364 28.652848 79.206516 53.929682 1.731827859 0.016542 141 71 SH2738 2738 Pro5 tRNA 71 83 187.71938 261.589445 224.6544125 2.351514953 -0.059166 141 72 SH2973 2973 Ser1 3' flank 27.242006 70.858832 49.050419 1.690642722 0.029888 141 73 SH21268 21268 YPL081W spliced 39.834991 91.435674 65.6353325 1.81713769 0.180302 141 74 SH14681 14681 MT 21S rRNA 21S rRNA4 28.071962 105.706197 28.071962 78.634235 53.3530985 1.727159646 -0.014789 141 75 SH6314 6314 snR42 351 + 3' 351 30.358295 75.766464 53.0623795 1.724786721 0.169936 141 76 SH1359 1359 Ile3 3' flank 29.937277 69.859799 49.898538 1.698087821 0.224887 141 77 SH13768 13768 MT COB intronic 29.569257 107.741653 29.569257 79.172396 54.3708265 1.735365935 0.076292 141 78 SH9185 9185 snR7 U5 RNA U5 196 212 80.183162 156.664413 118.4237875 2.073438947 -0.190582 141 79 SH19295 19295 YPL175W_16_218629_220087_INTRON_18_117 3' exon 29.50759 109.48038 29.50759 80.97279 55.24019 1.742255164 0.049846 141 80 SH14512 14512 MT 21S rRNA 21S rRNA3 30.680857 116.342279 30.680857 86.661422 58.6711395 1.768424523 0.016381 141 81 SH14904 14904 MT tRNA Ile 3' 27.250841 100.124662 27.250841 73.873821 50.562331 1.703827087 -0.009472 141 82 SH7316 7316 snR66 71-86 + 3' 71 27.162824 70.669023 48.9159235 1.689450257 0.026856 141 83 SH6283 6283 snR42 snR42 196 213 31.438633 85.155308 58.2969705 1.765645987 0.076158 141 84 SH21780 21780 copy of SH14230 26.415232 71.527648 48.97144 1.689942875 -0.038479 141 85 SH13423 13423 MT COX1 intronic 32.806392 122.973846 32.806392 91.167454 61.986923 1.792300079 0.02142 141 86 SH2192 2192 Met2 3' flank 25.817073 83.755884 54.7864785 1.738673386 -0.235736 141 87 SH16426 16426 YER074W_5_306319_307192_INTRON_4_469 intron 27.742595 102.301452 27.742595 75.558857 51.650726 1.71307643 0.002918 141 88 SH10550 10550 RUF8 RUF8 676 695 25.301292 69.672678 47.486985 1.676574597 -0.096239 141 89 SH748 748 Gln4 tRNA 11 28 27.387373 71.582604 49.4849885 1.694473474 0.030385 141 90 SH4211 4211 telomerase RNA telomerase 91 110 27.455956 64.282436 45.869196 1.661521128 0.13842 141 91 SH8458 8458 snoRNA cluster 5 snR128 27.555984 100.187115 27.555984 73.631131 50.5935575 1.704095218 0.01513 141 92 SH18543 18543 YMR230W_13_732413_733140_INTRON_53_462 intron 27.414659 93.118505 27.414659 66.703846 47.0592525 1.672645024 0.100039 141 93 SH1821 1821 Leu8 3' flank 26.91989 63.900187 45.4100385 1.65715187 0.106826 141 94 SH18 18 Ala1 5' flank - tRNA 3 5' flank 3 30.468094 94.789843 62.6289685 1.796775259 -0.131625 141 95 SH16141 16141 YDR092W_4_629869_630598_INTRON_31_298 intron 34.288935 134.848737 34.288935 101.559802 67.9243685 1.832025609 -0.160011 141 96 SH17545 17545 YJL177W_10_90783_91654_INTRON_310_626 intron 31.251581 134.529524 31.251581 104.277943 67.764762 1.831003917 -0.292923 141 97 SH6089 6089 snR37 snR37 361 377 28.39745 80.639893 54.5186715 1.736545264 -0.018284 141 98 SH15832 15832 YDL075W_4_322225_322987_INTRON_58_478 intron 32.820844 122.850685 32.820844 91.029841 61.9253425 1.791868417 0.024864 141 99 SH7851 7851 snoRNA cluster1 intergenic 26.66315 103.713853 26.66315 78.050703 52.3569265 1.718974144 -0.104345 141 100 SH17276 17276 YHR141C_8_382752_381991_INTRON_5_445 exon/intron 33.237743 115.221018 33.237743 82.983275 58.110509 1.76425468 0.190609 141 101 SH8967 8967 snR17a / U3a U3a 121 142 26.597108 71.047989 48.8225485 1.688620446 -0.018808 141 102 SH5688 5688 snR34 snR34 361 377 406.611001 649.410894 528.0109475 2.722642927 -0.555494 141 103 SH4166 4166 SRP RNA 3' 38.286363 89.617896 63.9521295 1.80585501 0.188262 141 104 SH2842 2842 Pro7 tRNA 16 32 39.299644 80.483905 59.8917745 1.777367181 0.428881 142 2 SH4493 4493 U3b (snR17b) U3b 21 42 27.764997 86.302972 57.0339845 1.756133713 -0.128675 142 3 SH1949 1949 Lys2 5' flank 27.37438 72.588354 49.981367 1.69880813 0.016083 142 4 SH15882 15882 YDL082W_4_308423_309387_INTRON_5_369 intron 33.464845 115.743226 33.464845 83.278381 58.371613 1.766201694 0.194231 142 5 SH4047 4047 SRP RNA SRP RNA 126 145 26.533105 75.333808 50.9334565 1.70700315 -0.079654 142 6 SH16952 16952 YGR029W_7_543547_544199_INTRON_87_169 5' exon 32.670071 120.923139 32.670071 89.253068 60.9615695 1.78505614 0.054876 142 7 SH2500 2500 Pro1 5' flank - tRNA5 5 224.575753 241.674789 233.125271 2.367589354 0.292754 142 8 SH8174 8174 snoRNA cluster 3; snR70 31.00168 113.974334 31.00168 83.972654 57.487167 1.759570907 0.07906 142 9 SH18114 18114 YLR367W_12_855877_857316_INTRON_698_1180 intron 29.440958 101.802931 29.440958 73.361973 51.4014655 1.710975501 0.144413 142 10 SH3865 3865 RNaseP RNaseP 291 303 53.717229 107.422545 80.569887 1.906172755 0.110017 142 11 SH15605 15605 YBR119W_2_479296_480281_INTRON_9_97 intron 32.110604 102.758396 32.110604 71.647792 51.879198 1.714993254 0.331631 142 12 SH18278 18278 YML056C_13_164176_162194_INTRON_461_868 intron 32.067095 121.790043 32.067095 90.722948 61.3950215 1.788133156 0.004674 142 13 SH20151 20151 YDL125C spliced 32.007701 77.876235 54.941968 1.739904212 0.238399 142 14 SH12700 12700 MT ORF 8 (hypothetical) ORF8 29.664942 101.447968 29.664942 72.783026 51.223984 1.709473353 0.166626 142 15 SH2517 2517 Pro1 3' flank 29.321048 66.51572 47.918384 1.680502163 0.232217 142 16 SH11770 11770 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5736 5753 3469.346433 2782.873145 3126.109789 3.495004226 -0.048134 142 17 SH19226 19226 YPL090C_16_378390_377286_INTRON_7_400 intron 28.453072 115.658765 28.453072 88.205693 58.3293825 1.765887379 -0.111837 142 18 SH20222 20222 YDR092W spliced 32.874544 103.085331 67.9799375 1.832380761 -0.226291 142 19 SH19837 19837 Negative Control 31.495329 90.196415 60.845872 1.784231119 -0.010402 142 20 SH16256 16256 YDR397C_4_1266887_1266355_INTRON_38_129 3' exon 31.749323 123.000155 31.749323 92.250832 62.0000775 1.792392232 -0.034492 142 21 SH5551 5551 snR33 snR33 41 62 26.71039 82.057332 54.383861 1.735470037 -0.15113 142 22 SH11749 11749 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5631 5644 42.263257 94.31353 68.2883935 1.834346896 0.165068 142 23 SH20954 20954 YML024W spliced 62.702681 125.66804 94.1853605 1.973983404 -0.044256 142 24 SH19716 19716 Negative Control 28.481116 87.776473 58.1287945 1.764391316 -0.102972 142 25 SH3486 3486 Tyr1 5' flank 26.916344 85.459151 56.1877475 1.749641622 -0.177327 142 26 SH10619 10619 RUF8 3' 29.801179 86.968368 58.3847735 1.7662996 -0.028025 142 27 SH9106 9106 snR14 / U4 RNA 146-160 + 3' 146 30.038915 71.999245 51.01908 1.707732623 0.201071 142 28 SH19663 19663 SIR1 2.2 27.678816 92.175307 59.9270615 1.777622983 -0.216861 142 29 SH16561 16561 YER133W_5_432491_433954_INTRON_178_702 intron 30.005186 101.262749 30.005186 72.257563 51.1313745 1.708687467 0.195368 142 30 SH4899 4899 snR9 5' 411.678205 457.614218 434.6462115 2.638135899 0.022824 142 31 SH880 880 Glu3 5' flank 30.440493 85.899747 58.17012 1.76469996 0.01951 142 32 SH14787 14787 MT ORF11; tRNA Leu; tRNA Gln 3' 25.614436 103.275709 25.614436 78.661273 52.1378545 1.717153156 -0.188989 142 33 SH7434 7434 snR69 snR69 71 88 32.616721 79.409876 56.0132985 1.748291148 0.233457 142 34 SH7038 7038 snR62 5' 30.294655 89.204891 59.749773 1.77633626 -0.045323 142 35 SH16252 16252 YDR397C_4_1266887_1266355_INTRON_38_129 intron 32.905864 124.076557 32.905864 92.170693 62.5382785 1.796145922 0.001784 142 36 SH9072 9072 snR14 / U4 RNA 5' 65.146178 103.150696 84.148437 1.925046054 0.369796 142 37 SH7187 7187 snR64 snR64 1 17 5039.057887 6152.550986 5595.804437 3.747862528 -0.818753 142 38 SH13415 13415 MT COX1 intronic 27.351476 102.766511 27.351476 76.415035 51.8832555 1.715027219 -0.035116 142 39 SH14941 14941 MT tRNA Asn 3' 26.730225 100.82894 26.730225 75.098715 50.91447 1.706841227 -0.0624 142 40 SH128 128 Arg1 16-28 16 28 49.728069 119.906818 84.8174435 1.928485178 -0.177939 142 41 SH813 813 Glu1 3' flank 26.841337 75.939661 51.390499 1.710882835 -0.065097 142 42 SH7605 7605 snR189 snR189 96 113 27.020527 71.565769 49.293148 1.692786554 0.004641 142 43 SH11524 11524 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4506 4525 26.892832 72.91722 49.905026 1.698144286 -0.022434 142 44 SH10364 10364 RUF7 RUF7 431 450 29.156094 78.416786 53.78644 1.7306728 0.05938 142 45 SH20590 20590 YHR021C spliced 26.657325 66.21933 46.4383275 1.66687657 0.053085 142 46 SH18521 18521 YMR225C_13_721402_720959_INTRON_59_205 exon/intron 71.039632 208.430251 71.039632 138.390619 104.7151255 2.020009418 -0.095836 142 47 SH11158 11158 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S/ITS1 2676 2693 1170.901557 1140.929965 1155.915761 3.062926185 -0.068304 142 48 SH15313 15313 YAL003W_1_142172_143158_INTRON_81_446 intron 27.955367 96.601778 27.955367 69.646411 48.800889 1.688427734 0.096229 142 49 SH14978 14978 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 26.149018 100.479213 26.149018 75.330195 50.7396065 1.705347095 -0.107689 142 50 SH1919 1919 Lys1 tRNA 51 63 35.389804 96.094111 65.7419575 1.817842631 -0.020665 142 51 SH11328 11328 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3526 3541 33967.99365 19892.36898 26930.18132 4.430239277 -0.185338 142 52 SH3792 3792 RNaseP 5' flank 28.30289 77.740591 53.0217405 1.72445398 0.012091 142 53 SH737 737 Gln4 5' flank 25.67475 68.994186 47.334468 1.6751775 -0.058631 142 54 SH13034 13034 MT COX1 COX1ai2 27.722336 108.037937 27.722336 81.315601 54.5189685 1.73654763 -0.071974 142 55 SH9951 9951 RUF5-1 RUF5-1 561 578 28.40517 83.681025 56.0430975 1.748522131 -0.054836 142 56 SH2401 2401 Phe4 tRNA 56 70 175.642672 296.31592 235.979296 2.372873901 -0.3471 142 57 SH15648 15648 YBR189W_2_604466_605466_INTRON_8_420 intron 30.442179 101.894281 30.442179 72.452102 51.4471405 1.711361241 0.21992 142 58 SH17910 17910 YLR061W_12_263195_263949_INTRON_13_401 intron 30.658845 114.108756 30.658845 84.449911 57.554378 1.760078365 0.05541 142 59 SH2718 2718 Pro5 5' flank 28.047272 77.803208 52.92524 1.723662836 -0.005809 142 60 SH7281 7281 snR65 3' 32.562448 91.066953 61.8147005 1.791091769 0.017281 142 61 SH16266 16266 YDR447C_4_1355542_1354818_INTRON_4_317 5' exon 32.663288 122.888216 32.663288 91.224928 61.944108 1.792000003 0.016404 142 62 SH12979 12979 MT COX1 COX1ai2 25.786583 104.616875 25.786583 79.830292 52.8084375 1.722703318 -0.190245 142 63 SH3537 3537 Tyr2 5' flank 28.243574 83.903234 56.073404 1.748756921 -0.068241 142 64 SH8039 8039 snoRNA cluster 2 intergenic 32.924112 121.098425 32.924112 89.174313 61.0492125 1.785680066 0.066609 142 65 SH613 613 Gln1 3' flank 28.05125 69.293539 48.6723945 1.687282712 0.107697 142 66 SH20817 20817 YKL190W spliced 28.017456 83.049572 55.533514 1.744555155 -0.073147 142 67 SH16262 16262 YDR424C_4_1319830_1319376_INTRON_26_121 intron 27.662277 116.674347 27.662277 90.01207 58.8371735 1.769651801 -0.180923 142 68 SH9915 9915 RUF5-1 RUF5-1 381 402 27.09341 72.053036 49.573223 1.695247155 0.003317 142 69 SH12607 12607 MT_15S MT_15S 28.901466 110.347215 28.901466 82.445749 55.6736075 1.745649363 -0.00731 142 70 SH10395 10395 RUF8 5' 30.951613 86.115249 58.533431 1.767403981 0.037921 142 71 SH4598 4598 snR3 5' 40.429372 101.239701 70.8345365 1.850245056 -0.017602 142 72 SH11962 11962 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6696 6709 95.40149 134.694211 115.0478505 2.060878509 0.270416 142 73 SH3158 3158 Ser5 5' flank 27.563307 86.210732 56.8870195 1.75501318 -0.141341 142 74 SH18108 18108 YLR367W_12_855877_857316_INTRON_698_1180 intron 28.073615 98.395027 28.073615 71.321412 49.6975135 1.69633466 0.081553 142 75 SH14795 14795 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys 28.27881 101.868202 28.27881 74.589392 51.434101 1.711251153 0.051917 142 76 SH9570 9570 RUF3 RUF3 236 257 28.125215 71.667013 49.896114 1.698066723 0.080451 142 77 SH12746 12746 MT COX1 COX1ai1 30.169793 124.899412 30.169793 95.729619 62.949706 1.798993706 -0.160055 142 78 SH12610 12610 MT_15S MT_15S 29.920994 111.168866 29.920994 82.247872 56.084433 1.748842334 0.060417 142 79 SH11309 11309 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2/25S 3431 3450 27.524918 81.747352 54.636135 1.737479969 -0.090742 142 80 SH3223 3223 Thr1 5' flank 27.637292 80.607466 54.122379 1.733376878 -0.069006 142 81 SH21379 21379 Lys3_4 spliced 32.565324 82.164199 57.3647615 1.758645192 0.178599 142 82 SH21518 21518 copy of SH3113 30.224497 74.574328 52.3994125 1.719326418 0.177492 142 83 SH21725 21725 copy of SH11920 83.66605 124.310164 103.988107 2.016983672 0.273257 142 84 SH10294 10294 RUF7 RUF7 81 98 29.712762 85.534836 57.623799 1.760601887 -0.00629 142 85 SH3095 3095 Ser3 3' flank 29.254841 93.424007 61.339424 1.787739693 -0.163559 142 86 SH537 537 Cys1 5' flank - tRNA3 5' flank 3 28.604654 89.35736 58.981007 1.770712183 -0.124793 142 87 SH2213 2213 Phe1 5' flank 25.734665 87.183044 56.4588545 1.751732062 -0.281912 142 88 SH11883 11883 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6301 6319 40.945888 79.247735 60.0968115 1.778851431 0.495387 142 89 SH8770 8770 LSR1 / U2 RNA U2 491 503 92.952483 154.912615 123.932549 2.093185382 -0.007379 142 90 SH334 334 Arg5 tRNA 6 18 44.145904 117.915632 81.030768 1.908649955 -0.250922 142 91 SH7971 7971 snoRNA cluster 2 5'/snR57 31.866759 118.257482 31.866759 87.390723 59.628741 1.77545564 0.054175 142 92 SH15726 15726 YBR255C-A_2_727032_726576_INTRON_64_157 3' exon 36.128641 140.541902 36.128641 105.413261 70.770951 1.849855032 -0.193463 142 93 SH174 174 Arg2 5' flank - tRNA3 5' flank 3 26.94079 67.519656 47.230223 1.674219996 0.054795 142 94 SH12275 12275 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.406382 119.359995 32.406382 87.953613 60.1799975 1.779452165 0.066718 142 95 SH6561 6561 snR47 5' 27.652094 67.123506 47.3878 1.675666547 0.110628 142 96 SH14708 14708 MT tRNA thr2 3' 27.502274 94.39005 27.502274 67.887776 47.695025 1.678473081 0.089302 142 97 SH5287 5287 snR30 snR30 286 298 42.211149 93.316608 67.7638785 1.830998255 0.185972 142 98 SH14818 14818 "MT tRNAs (Lys, Arg1, Gly)" intergenic 26.011729 99.306221 26.011729 74.294492 50.1531105 1.700297873 -0.104542 142 99 SH10949 10949 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1631 1653 34.910295 72.688803 53.799549 1.730778635 0.461219 142 100 SH19276 19276 YPL143W_16_282121_282969_INTRON_20_544 intron 26.695607 113.025498 26.695607 87.329891 57.012749 1.755971982 -0.214523 142 101 SH572 572 Gln1 5' flank 26.412747 76.673491 51.543119 1.712170695 -0.105324 142 102 SH4658 4658 snR3 3' 29.517668 77.242815 53.3802415 1.727380534 0.097706 142 103 SH19060 19060 YOR234C_15_779404_778554_INTRON_20_546 3' exon 32.208391 134.36223 32.208391 103.153839 67.681115 1.830467505 -0.245138 142 104 SH3762 3762 Val4 tRNA 36 50 58.510788 129.629941 94.0703645 1.973452827 -0.171699 143 2 SH4552 4552 U3b (snR17b) U3b 316 333 27.766603 80.449807 54.108205 1.733263127 -0.05825 143 3 SH21484 21484 copy of SH1850 33.988775 88.70706 61.3479175 1.787799825 0.10724 143 4 SH1852 1852 Leu9 tRNA 1 13 28499.34934 15202.81425 21851.0818 4.339472943 0.009851 143 5 SH16902 16902 YGL226C-A_7_73156_72747_INTRON_22_170 3' exon 32.541502 112.638144 32.541502 81.096642 56.819072 1.754494136 0.197851 143 6 SH8521 8521 snR19 / U1 RNA U1 101 120 29.725614 83.337384 56.531499 1.752290501 0.034551 143 7 SH11479 11479 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4281 4296 60.641344 98.487428 79.564386 1.900718716 0.391389 143 8 SH11665 11665 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5211 5224 27.728632 72.618159 50.1733955 1.700473493 0.040451 143 9 SH3611 3611 Val1 tRNA 51 65 28.636422 76.877678 52.75705 1.722280503 0.045341 143 10 SH6393 6393 snR43 206-209 + 3' 206 29.247069 66.460124 47.8535965 1.679914583 0.228155 143 11 SH10315 10315 RUF7 RUF7 186 204 29.465744 67.637525 48.5516345 1.686203855 0.225649 143 12 SH18190 18190 YML024W_13_225889_226697_INTRON_4_401 intron 29.630735 107.216523 29.630735 78.585788 54.1082615 1.73326358 0.087651 143 13 SH5698 5698 snR34 snR34 411 426 27.60678 73.837221 50.7220005 1.705196374 0.015994 143 14 SH14059 14059 MT COB Cytbi4 25.402702 93.316677 25.402702 68.913975 47.1583385 1.673558495 -0.078029 143 15 SH14247 14247 MT tRNA Ser tRNA/3' 27.334245 101.212001 27.334245 74.877756 51.1060005 1.708471895 -0.01654 143 16 SH10149 10149 RUF6 RUF6 591 614 26.161314 78.863992 52.512653 1.72026396 -0.150775 143 17 SH8604 8604 snR19 / U1 RNA U1 516 531 41.030573 98.808063 69.919318 1.844597183 0.044689 143 18 SH15842 15842 YDL075W_4_322225_322987_INTRON_58_478 intron 28.317884 112.016575 28.317884 84.698691 56.5082875 1.752112146 -0.072737 143 19 SH13714 13714 MT tRNAGlu (and 5' processing site for COB) 3' 26.559312 99.329942 26.559312 73.77063 50.164971 1.700400566 -0.057632 143 20 SH5829 5829 snR35 snR35 331 347 66.455821 128.288026 97.3719235 1.988433749 -0.025196 143 21 SH9265 9265 RUF1 5' 28.752066 79.709338 54.230702 1.734245226 0.01672 143 22 SH2085 2085 Lys4 91-96 + 3' flank 91 108 28.66251 70.085648 49.374079 1.693499008 0.138305 143 23 SH17445 17445 YIL148W_9_68708_69528_INTRON_9_442 5' exon 31.286534 105.936727 31.286534 75.650193 53.4683635 1.728096892 0.228221 143 24 SH8282 8282 snoRNA cluster4 intergenic 29.561399 122.805099 29.561399 94.2437 61.9025495 1.791708536 -0.16312 143 25 SH16980 16980 YGR034W_7_555923_556666_INTRON_20_496 intron 27.64387 97.909458 27.64387 71.265588 49.454729 1.694207826 0.052597 143 26 SH4489 4489 U3b (snR17b) U3b 1 15 30.135501 88.22352 59.1795105 1.772171369 -0.03526 143 27 SH1226 1226 Ile1 3' flank 30.124552 63.271768 46.69816 1.669299769 0.332259 143 28 SH12879 12879 MT COX1 COX1ai1 27.681753 109.746598 27.681753 83.064845 55.373299 1.743300398 -0.096044 143 29 SH21254 21254 YPL075W spliced 32.291851 93.048859 62.670355 1.797062155 -0.033571 143 30 SH5991 5991 snR36 3' 32.29341 77.54389 54.91865 1.739719853 0.256909 143 31 SH13109 13109 MT COX1 COX1ai3 27.715087 100.470779 27.715087 73.755692 50.7353895 1.705310999 0.024595 143 32 SH1570 1570 Leu4 tRNA 21 35 30.117019 84.448996 57.2830075 1.758025811 0.031561 143 33 SH16094 16094 YDR025W_4_491510_492319_INTRON_46_384 3' exon 37.287294 118.658065 37.287294 82.370771 59.8290325 1.77691198 0.336896 143 34 SH10911 10911 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1441 1454 1161.567288 1197.939654 1179.753471 3.071791264 -0.15527 143 35 SH13908 13908 MT COB Cytbi3 28.099385 96.62413 28.099385 69.524745 48.812065 1.688527181 0.107803 143 36 SH19092 19092 YOR312C_15_901173_900242_INTRON_2_427 intron 28.05621 112.88408 28.05621 85.82787 56.94204 1.755433022 -0.103489 143 37 SH13851 13851 MT COB Cytbi2 27.852319 100.421291 27.852319 73.568972 50.7106455 1.705099139 0.03654 143 38 SH4542 4542 U3b (snR17b) U3b 266 280 32.352128 81.011264 56.681696 1.753442837 0.191669 143 39 SH11730 11730 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5536 5553 166.607507 187.287483 176.947495 2.247844419 0.353535 143 40 SH7382 7382 snR68 131-136 + 3' 131 29.685642 74.955375 52.3205085 1.718671956 0.138495 143 41 SH18359 18359 YMR033W_13_337787_339276_INTRON_31_116 intron 27.533571 100.091984 27.533571 73.558413 50.545992 1.703686724 0.014511 143 42 SH1393 1393 Leu1 tRNA-exon/intron 36 53 29.616065 81.428109 55.522087 1.744465782 0.051145 143 43 SH14479 14479 MT 21S rRNA 21S rRNA3 45.372229 152.208622 45.372229 107.836393 76.604311 1.884253211 -0.047628 143 44 SH12114 12114 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7456 7473 51.323409 114.020564 82.6719865 1.917358373 -0.049454 143 45 SH9707 9707 RUF4 RUF4 311 323 28.17242 78.173438 53.172929 1.725690584 -0.002173 143 46 SH3660 3660 Val2 tRNA 41 53 31.864891 79.912477 55.888684 1.747323883 0.192485 143 47 SH19365 19365 YPR028W_16_623522_624197_INTRON_52_184 intron 42.420756 134.504917 42.420756 93.084161 67.7524585 1.830925059 0.195191 143 48 SH18501 18501 YMR194W_13_651144_651909_INTRON_17_479 intron 35.962597 133.544968 35.962597 98.582371 67.272484 1.827837464 -0.059065 143 49 SH13180 13180 MT COX1 Exon4 32.238097 129.178458 32.238097 97.940361 65.089229 1.813509127 -0.139034 143 50 SH15633 15633 YBR186W_2_600511_602318_INTRON_1552_1664 5' exon 28.492469 103.938099 28.492469 76.44563 52.4690495 1.719903197 0.041488 143 51 SH13091 13091 MT COX1 COX1ai3 26.617513 99.240036 26.617513 73.622523 50.120018 1.700011218 -0.051488 143 52 SH13085 13085 MT COX1 COX1ai3 26.345858 101.207602 26.345858 75.861744 51.103801 1.708453203 -0.099994 143 53 SH7709 7709 snoRNA cluster1 snR77 32.238088 116.82278 32.238088 85.584692 58.91139 1.77019927 0.101986 143 54 SH856 856 Glu2 tRNA 46 58 42.993102 93.782757 68.3879295 1.834979455 0.190796 143 55 SH4050 4050 SRP RNA SRP RNA 141 155 34.964882 86.720623 60.8427525 1.784208853 0.17743 143 56 SH1615 1615 Leu5 5' flank 29.471759 85.983772 57.7277655 1.761384747 -0.025288 143 57 SH14234 14234 MT ATP9 3' 27.975064 106.152114 27.975064 79.17705 53.576057 1.728970748 -0.028191 143 58 SH19441 19441 YPR187W_16_911252_911795_INTRON_21_96 intron 30.490819 108.626685 30.490819 79.135866 54.8133425 1.738886286 0.13458 143 59 SH16181 16181 YDR367W_4_1212837_1213603_INTRON_31_131 5' exon 27.69751 101.475404 27.69751 74.777894 51.237702 1.709589643 0.010166 143 60 SH2411 2411 Phe4 3' flank 27.292191 74.238533 50.765362 1.705567487 -0.011278 143 61 SH16090 16090 YDR025W_4_491510_492319_INTRON_46_384 intron 27.503459 108.430425 27.503459 81.926966 54.7152125 1.73810809 -0.094409 143 62 SH14935 14935 MT tRNA Asn tRNA 30.53738 106.436707 30.53738 76.899327 53.7183535 1.730122693 0.166159 143 63 SH18891 18891 YOL120C_15_94401_93394_INTRON_113_559 5' exon 28.482218 99.077224 28.482218 71.595006 50.038612 1.699305254 0.105707 143 64 SH3722 3722 Val3 3' flank 28.253302 75.825571 52.0394365 1.716332585 0.03376 143 65 SH18737 18737 YNL162W_14_331319_332151_INTRON_5_516 intron 27.893825 111.034909 27.893825 84.141084 56.0174545 1.74832337 -0.094553 143 66 SH21111 21111 YNL069C spliced 27.606382 79.68194 53.644161 1.729522457 -0.059552 143 67 SH11460 11460 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4186 4201 34.300163 83.351889 58.826026 1.769569511 0.225864 143 68 SH333 333 Arg5 tRNA 1 13 36.459695 89.892475 63.176085 1.800552709 0.140265 143 69 SH2708 2708 Pro5 5' flank 29.478008 83.682585 56.5802965 1.752665219 0.014998 143 70 SH16686 16686 YGL030W_7_439087_439634_INTRON_4_233 intron 31.683341 119.682194 31.683341 88.998853 60.341097 1.780613201 0.018241 143 71 SH19224 19224 YPL090C_16_378390_377286_INTRON_7_400 exon/intron 26.806524 106.276076 26.806524 80.469552 53.638038 1.729472884 -0.124798 143 72 SH15909 15909 YDL083C_4_307788_306925_INTRON_25_456 intron 26.634669 100.511981 26.634669 74.877312 50.7559905 1.705487307 -0.066464 143 73 SH5062 5062 snR11 5' 26.88954 78.730425 52.8099825 1.722716024 -0.097096 143 74 SH1316 1316 Ile3 5' flank 27.49921 87.655793 57.5775015 1.760252815 -0.162371 143 75 SH1141 1141 His1 5' flank 27.991097 92.547813 60.269455 1.780097264 -0.208084 143 76 SH19958 19958 YBL059C-A spliced 28.090221 70.311887 49.201054 1.691974406 0.096371 143 77 SH15253 15253 MT tRNA fMet 3' 29.054389 101.79644 29.054389 73.742051 51.39822 1.710948079 0.114336 143 78 SH1080 1080 Gly3 3' flank 32.359639 86.612085 59.485862 1.774413759 0.088563 143 79 SH9344 9344 RUF1 RUF1 296 312 32.316073 94.189929 63.253001 1.801081135 -0.057681 143 80 SH21333 21333 YPR063C spliced 34.9674 93.74559 64.356495 1.808592383 0.019318 143 81 SH13173 13173 MT COX1 Exon4 25.732316 102.72774 25.732316 77.995424 51.86387 1.71486492 -0.171989 143 82 SH21644 21644 copy of SH8559 30.680204 82.883896 56.78205 1.754211068 0.085298 143 83 SH18422 18422 YMR133W_13_536206_537608_INTRON_1243_1358 intron/exon 32.966903 117.160092 32.966903 85.193189 59.080046 1.771440825 0.139 143 84 SH8637 8637 snR19 / U1 RNA 3' 27.862588 65.874505 46.8685465 1.670881485 0.143256 143 85 SH17391 17391 YIL069C_9_232366_231550_INTRON_4_412 intron 29.657038 110.838316 29.657038 82.181278 55.919158 1.747560623 0.044532 143 86 SH18498 18498 YMR194W_13_651144_651909_INTRON_17_479 intron 28.791491 107.757002 28.791491 79.965511 54.378501 1.735427232 0.016089 143 87 SH19167 19167 YPL079W_16_406631_407534_INTRON_12_432 5' exon 47.413124 146.141006 47.413124 99.727882 73.570503 1.866703725 0.148635 143 88 SH16610 16610 YFL034C-B_6_63992_63015_INTRON_21_134 intron 25.703029 99.171403 25.703029 74.468374 50.0857015 1.699713761 -0.129777 143 89 SH3736 3736 Val4 5' flank 28.099482 76.313971 52.2067265 1.717726463 0.017045 143 90 SH15562 15562 YBR084C-A_2_415219_414144_INTRON_3_508 5' exon 28.191988 107.059526 28.191988 79.867538 54.029763 1.732633063 -0.022331 143 91 SH4172 4172 SRP RNA 3' 28.042123 73.260488 50.6513055 1.704590643 0.053651 143 92 SH6992 6992 snR60 snR60 41 58 29.730995 79.114293 54.422644 1.735779637 0.087305 143 93 SH6061 6061 snR37 snR37 221 240 24.595335 66.990657 45.792996 1.660799058 -0.109973 143 94 SH17913 17913 YLR061W_12_263195_263949_INTRON_13_401 intron 31.773268 148.856188 31.773268 118.08292 74.928094 1.874644685 -0.533261 143 95 SH10928 10928 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1526 1539 31.101131 101.381069 66.2411 1.821127536 -0.239837 143 96 SH21224 21224 YOR182C spliced 29.051564 95.094511 62.0730375 1.792902998 -0.200308 143 97 SH15532 15532 YBR078W_2_393082_394818_INTRON_59_388 5' exon 27.354706 107.546589 27.354706 81.191883 54.2732945 1.734586185 -0.095603 143 98 SH10808 10808 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 926 944 4140.70888 2683.668902 3412.188891 3.533033065 0.239668 143 99 SH18055 18055 YLR333C_12_796335_795573_INTRON_1_423 intron 30.551731 108.077115 30.551731 78.525384 54.5385575 1.736703647 0.146094 143 100 SH11149 11149 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2631 2650 24448.83679 13822.52178 19135.67929 4.281843884 -0.039996 143 101 SH2485 2485 Pro1 5' flank 30.223318 91.536801 60.8800595 1.784475068 -0.088399 143 102 SH13081 13081 MT COX1 COX1ai3 29.280546 108.568498 29.280546 80.287952 54.784249 1.738655713 0.043796 143 103 SH5409 5409 snR31 snR31 111 132 26.373264 75.784465 51.0788645 1.708241234 -0.097014 143 104 SH89 89 Ala2 3' flank 23.548631 66.926766 45.2376985 1.655500502 -0.190292 144 2 SH13386 13386 MT COX1 Exon 5b 29.764796 122.181278 29.764796 93.416482 61.590639 1.78951471 -0.140304 144 3 SH11307 11307 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3421 3438 26.977953 83.749092 55.3635225 1.743223714 -0.152782 144 4 SH17748 17748 YKL157W_11_154993_158183_INTRON_282_664 intron 28.564433 101.588648 28.564433 74.024215 51.294324 1.710069311 0.078468 144 5 SH10028 10028 RUF6 5' - 1 -14 1 30.132429 72.790064 51.4612465 1.711480302 0.19599 144 6 SH13142 13142 MT COX1 intronic 25.464875 96.445134 25.464875 71.980259 48.722567 1.687730161 -0.115095 144 7 SH7531 7531 snR79 5' - 17 -4 17 51.853074 96.032625 73.9428495 1.868896183 0.301941 144 8 SH5369 5369 snR31 5' 35.4838 95.723657 65.6037285 1.816928523 -0.010554 144 9 SH13088 13088 MT COX1 COX1ai3 30.256451 138.45096 30.256451 109.194509 69.72548 1.843391513 -0.414137 144 10 SH12596 12596 MT_15S MT_15S 26.772206 113.342505 26.772206 87.570299 57.1712525 1.757177707 -0.211877 144 11 SH12919 12919 MT COX1 COX1ai2 37.915475 167.653097 37.915475 130.737622 84.3265485 1.925964325 -0.592115 144 12 SH7052 7052 snR62 snR62 51 70 29.526358 119.819004 74.672681 1.873161744 -0.623708 144 13 SH2482 2482 Pro1 5' flank 31.809237 125.080345 78.444791 1.89456411 -0.651074 144 14 SH13274 13274 MT COX1 Exon 5a 29.528239 113.729842 29.528239 85.201603 57.364921 1.7586464 -0.008589 144 15 SH14732 14732 MT tRNA cys; tRNA his tRNA his 35.996195 228.037896 35.996195 193.041701 114.518948 2.05887735 -1.406739 144 16 SH15786 15786 YDL029W_4_399336_400634_INTRON_23_145 intron 36.344201 233.305576 36.344201 197.961375 117.152788 2.068752628 -1.445751 144 17 SH18534 18534 YMR230W_13_732413_733140_INTRON_53_462 intron 25.902596 92.844657 25.902596 67.942061 46.9223285 1.671379556 -0.02687 144 18 SH13272 13272 MT COX1 Exon 5a 28.55678 96.287385 28.55678 68.730605 48.6436925 1.687026534 0.149922 144 19 SH11871 11871 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6241 6258 14407.59499 10162.86639 12285.23069 4.089383316 -0.244052 144 20 SH11688 11688 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5326 5344 16474.1292 11369.487 13921.8081 4.143695643 -0.246574 144 21 SH9376 9376 RUF1 RUF1 456 472 33.277904 94.235094 63.756499 1.804524461 -0.033587 144 22 SH10145 10145 RUF6 RUF6 571 588 31.506124 91.131162 61.318643 1.787592535 -0.025893 144 23 SH9136 9136 snR7 U5 RNA 5' 29.82575 78.584783 54.2052665 1.734041484 0.100024 144 24 SH3363 3363 Thr4 5' flank 27.933387 80.475619 54.204503 1.734035367 -0.047288 144 25 SH17716 17716 YKL081W_11_282533_284097_INTRON_206_531 intron 30.374787 110.420983 30.374787 81.046196 55.7104915 1.74593699 0.103514 144 26 SH18769 18769 YNL246W_14_185459_186348_INTRON_33_127 intron 30.125464 117.096565 30.125464 87.971101 59.0482825 1.77120727 -0.031274 144 27 SH2796 2796 Pro6 tRNA 71 83 97.251621 179.160993 138.206307 2.140527862 -0.209695 144 28 SH18295 18295 YML073C_13_124172_123227_INTRON_16_430 intron 29.896327 113.998739 29.896327 85.102412 57.4993695 1.759663083 0.009794 144 29 SH9525 9525 RUF3 RUF3 11 27 29.898176 88.695711 59.2969435 1.773032308 -0.0541 144 30 SH1727 1727 Leu7 5' flank 32.312059 89.066725 60.689392 1.783112787 0.043361 144 31 SH7856 7856 snoRNA cluster1 intergenic 32.483317 124.887147 32.483317 93.40383 62.9435735 1.798951396 -0.03625 144 32 SH7577 7577 snR189 5' 30.242714 84.490946 57.36683 1.758660852 0.036367 144 33 SH18711 18711 YNL130C_14_381156_379555_INTRON_30_470 intron 29.133643 122.69997 29.133643 94.566327 61.849985 1.791339599 -0.187915 144 34 SH17290 17290 YHR141C_8_382752_381991_INTRON_5_445 intron 28.018474 108.525233 28.018474 81.506759 54.7626165 1.73848419 -0.054304 144 35 SH15267 15267 MT 9S rRNA 9S 27.911079 99.3173 27.911079 72.406221 50.15865 1.700345839 0.055885 144 36 SH16833 16833 YGL178W_7_167356_170575_INTRON_4_643 intron 30.006379 107.716133 30.006379 78.709754 54.3580665 1.735264001 0.10981 144 37 SH12371 12371 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.232355 119.351617 32.232355 88.119262 60.1758085 1.779421934 0.0566 144 38 SH3328 3328 Thr3 5' flank - tRNA3 3 27.586411 73.8038 50.6951055 1.704966031 0.015007 144 39 SH6705 6705 snR49 snR49 51 67 31.351549 81.20055 56.2760495 1.750323603 0.146011 144 40 SH1146 1146 His1 5' flank 28.116949 77.340052 52.7285005 1.722045421 0.004844 144 41 SH14723 14723 MT tRNA cys; tRNA his tRNA Cys / intergenic 28.262303 112.301867 28.262303 85.039564 56.6509335 1.753207071 -0.08046 144 42 SH6991 6991 snR60 snR60 36 53 27.798258 82.814262 55.30626 1.742774291 -0.085105 144 43 SH5868 5868 snR35 526-540 + 3' 526 31.463982 92.598806 62.031394 1.792611541 -0.052399 144 44 SH16754 16754 YGL076C_7_365994_364333_INTRON_565_1032 intron/exon 26.03808 102.785684 26.03808 77.747604 51.892842 1.715107456 -0.146187 144 45 SH15544 15544 YBR078W_2_393082_394818_INTRON_59_388 intron 27.615279 100.543017 27.615279 73.927738 50.7715085 1.705620067 0.015412 144 46 SH10669 10669 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 231 248 33.682677 103.984195 68.833436 1.837799449 -0.223164 144 47 SH3268 3268 Thr2 5' flank 24.870536 83.658659 54.2645975 1.734516586 -0.304952 144 48 SH17360 17360 YIL052C_9_257061_256224_INTRON_38_509 intron 24.976127 94.161594 24.976127 70.185467 47.580797 1.677431712 -0.128186 144 49 SH21282 21282 YPL143W spliced 34.200805 93.733633 63.967219 1.80595747 0.00063 144 50 SH10822 10822 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 996 1016 30.750992 81.182168 55.96658 1.747928769 0.120474 144 51 SH12573 12573 MT_15S MT_15S 26.809115 97.041668 26.809115 71.232553 49.020834 1.690380696 -0.006008 144 52 SH14934 14934 MT tRNA Asn tRNA 33.329023 119.311462 33.329023 86.982439 60.155731 1.779277009 0.121468 144 53 SH12077 12077 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7271 7293 30.278812 90.446366 60.362589 1.780767859 -0.067404 144 54 SH17324 17324 YIL004C_9_348502_347943_INTRON_12_142 intron 34.516285 126.622762 34.516285 93.106477 63.811381 1.804898144 0.02211 144 55 SH14863 14863 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 26.392766 111.563399 26.392766 86.170633 56.2816995 1.750367203 -0.22264 144 56 SH1960 1960 Lys2 tRNA 1 13 29.68386 85.930088 57.806974 1.761980236 -0.014724 144 57 SH4368 4368 telomerase RNA telomerase 876 894 30.342218 83.26024 56.801229 1.754357733 0.063463 144 58 SH9219 9219 snR6 / U6 RNA 5' 27.958375 80.165018 54.0616965 1.73288967 -0.041731 144 59 SH21176 21176 YNR053C spliced 29.712663 96.945083 63.328873 1.801601759 -0.200008 144 60 SH5400 5400 snR31 snR31 66 80 45.47019 110.861654 78.165922 1.893017455 -0.101629 144 61 SH20599 20599 YHR041C spliced 36.436557 95.819023 66.12779 1.820384009 0.010071 144 62 SH13287 13287 MT COX1 Exon 5a 28.017415 108.159144 28.017415 81.141729 54.579572 1.737030126 -0.049882 144 63 SH14643 14643 MT 21S rRNA intronic 28.488704 101.60276 28.488704 74.114056 51.30138 1.710129048 0.072251 144 64 SH2454 2454 Phe5 tRNA-intron/exon 41 57 30.542992 95.484972 63.013982 1.799436925 -0.139642 144 65 SH17171 17171 YHR021C_8_148660_147862_INTRON_4_553 5' exon 43.006243 136.582961 43.006243 94.576718 68.7914805 1.837534656 0.173658 144 66 SH6454 6454 snR45 snR45 116 135 27.237133 69.368102 48.3026175 1.683970666 0.049946 144 67 SH13069 13069 MT COX1 intronic / exon3 36.471244 132.127008 36.471244 96.655764 66.563504 1.823236176 -0.006801 144 68 SH20588 20588 YHR021C spliced 27.473328 78.694797 53.0840625 1.724964152 -0.056174 144 69 SH17126 17126 YHR010W_8_126513_127484_INTRON_32_592 intron 25.492371 100.568002 25.492371 76.075631 50.784001 1.705726914 -0.166116 144 70 SH13095 13095 MT COX1 COX1ai3 27.741291 110.556668 27.741291 83.815377 55.778334 1.746465539 -0.101001 144 71 SH7006 7006 snR60 3' 29.346673 90.463644 59.9051585 1.777464222 -0.109551 144 72 SH7425 7425 snR69 snR69 26 43 32.925174 93.691977 63.3085755 1.801462542 -0.030957 144 73 SH20851 20851 YLR061W spliced 44.127984 94.550775 69.3393795 1.840979951 0.195409 144 74 SH5742 5742 snR34 3' 26.714587 72.179027 49.446807 1.694138253 -0.025476 144 75 SH12497 12497 MT_tRNA Pro tRNA 41.684702 142.42938 41.684702 101.744678 71.71469 1.855608125 -0.002337 144 76 SH424 424 Asp1 5' flank 27.754226 83.338592 55.546409 1.744655988 -0.094411 144 77 SH15308 15308 YAL001C_1_151163_147591_INTRON_71_160 intron/exon 32.442459 117.386733 32.442459 85.944274 59.1933665 1.77227304 0.103958 144 78 SH7107 7107 snR63 snR63 41 59 29.87188 91.50735 60.689615 1.783114382 -0.103555 144 79 SH19179 19179 YPL079W_16_406631_407534_INTRON_12_432 intron 27.489923 94.1638 27.489923 67.673877 47.5819 1.67744178 0.091465 144 80 SH19957 19957 YBL059C-A spliced 27.727484 71.921494 49.824489 1.697442853 0.049621 144 81 SH14498 14498 MT 21S rRNA 21S rRNA3 212.396933 535.682046 212.396933 324.285113 268.341023 2.428687071 -0.259548 144 82 SH14036 14036 MT COB Cytbi4 27.156813 99.934855 27.156813 73.778042 50.4674275 1.703011168 -0.014884 144 83 SH5297 5297 snR30 snR30 336 353 28.225296 78.148748 53.187022 1.725805674 0.001676 144 84 SH15249 15249 MT tRNA fMet tRNA / 3' 27.927446 105.271566 27.927446 78.34412 53.135783 1.725387085 -0.020813 144 85 SH18308 18308 YML073C_13_124172_123227_INTRON_16_430 intron 29.812435 119.353083 29.812435 90.540648 60.1765415 1.779427224 -0.089792 144 86 SH9386 9386 RUF1 RUF1 506 523 31.437473 89.690494 60.5639835 1.782214432 -0.004161 144 87 SH8761 8761 LSR1 / U2 RNA U2 446 461 123.346712 154.505642 138.926177 2.142784085 0.32249 144 88 SH9672 9672 RUF4 RUF4 136 153 28.734493 82.946447 55.84047 1.746949065 -0.024289 144 89 SH8869 8869 LSR1 / U2 RNA U2 986 1002 31.397239 96.54499 63.9711145 1.805983917 -0.132485 144 90 SH18627 18627 YNL096C_14_444312_443395_INTRON_145_489 intron 26.947748 93.3172 26.947748 67.369452 47.1586 1.673560904 0.05743 144 91 SH10192 10192 RUF6 RUF6 806 822 28.810615 86.493916 57.6522655 1.760816378 -0.064806 144 92 SH15808 15808 YDL061C_4_341182_340627_INTRON_1_408 intron 32.082336 117.654237 32.082336 86.571901 59.3271185 1.773253255 0.077762 144 93 SH7070 7070 snR62 3' 28.224848 120.626049 74.4254485 1.87172146 -0.675728 144 94 SH19779 19779 Negative Control 34.834754 91.706451 63.2706025 1.80120197 0.060727 144 95 SH10462 10462 RUF8 RUF8 236 252 26.515652 89.928779 58.2222155 1.765088727 -0.256628 144 96 SH6879 6879 snR56 snR56 26 40 36.85678 98.183879 67.5203295 1.829434553 -0.030504 144 97 SH2211 2211 Phe1 5' flank 31.499452 82.903924 57.201688 1.757408845 0.120195 144 98 SH7800 7800 snoRNA cluster1 snR75 30.154508 112.99068 30.154508 83.836172 56.99534 1.755839349 0.044493 144 99 SH20483 20483 YGL226C-A spliced 28.528042 89.425017 58.9765295 1.770679213 -0.129553 144 100 SH9423 9423 RUF2 5' 30.586699 72.843063 51.714881 1.71361553 0.223455 144 101 SH19985 19985 YBL091C-A spliced 27.871891 84.791229 56.33156 1.750751778 -0.103742 144 102 SH12205 12205 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7911 7928 43.361148 115.785591 79.5733695 1.900767748 -0.230624 144 103 SH4402 4402 telomerase RNA telomerase 1046 1065 26.29955 68.10793 47.20374 1.67397641 0.000079 144 104 SH9945 9945 RUF5-1 RUF5-1 531 545 48.939217 113.024304 80.9817605 1.908387214 -0.074454 145 2 SH11064 11064 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2206 2221 28634.05487 12165.56402 20399.80945 4.309626111 0.368033 145 3 SH10123 10123 RUF6 RUF6 461 479 28.593654 75.332025 51.9628395 1.715692875 0.06286 145 4 SH766 766 Gln4 3' flank 28.092955 73.706365 50.89966 1.706714881 0.051316 145 5 SH8354 8354 snoRNA cluster4 3' 28.969679 122.935407 28.969679 94.965728 61.9677035 1.792165402 -0.201989 145 6 SH4295 4295 telomerase RNA telomerase 511 527 27.923784 86.850944 57.387364 1.758816277 -0.124267 145 7 SH21277 21277 YPL129W spliced 26.771907 80.153824 53.4628655 1.728052232 -0.123296 145 8 SH18495 18495 YMR194W_13_651144_651909_INTRON_17_479 intron 33.94766 120.140312 33.94766 87.192652 60.570156 1.782258692 0.141172 145 9 SH2060 2060 Lys4 5' flank 28.081658 86.869897 57.4757775 1.759484855 -0.113863 145 10 SH15871 15871 YDL079C_4_314747_312950_INTRON_413_704 intron/exon 24.360785 94.302653 24.360785 70.941868 47.6513265 1.678074995 -0.186121 145 11 SH1278 1278 Ile2 tRNA-intron/exon 86 102 28.975019 83.086758 56.0308885 1.748427509 -0.010275 145 12 SH7357 7357 snR68 snR68 6 25 27.259633 77.603689 52.431661 1.719593616 -0.056908 145 13 SH4664 4664 snR3 3' 27.337532 82.554954 54.946243 1.739938002 -0.113455 145 14 SH19166 19166 YPL079W_16_406631_407534_INTRON_12_432 5' exon 40.245369 147.33163 40.245369 108.086261 74.165815 1.870203774 -0.155092 145 15 SH19764 19764 Negative Control 27.391431 111.859995 69.625713 1.842769656 -0.548139 145 16 SH14238 14238 MT tRNA Ser 5' 27.960069 98.910982 27.960069 71.950913 49.955491 1.698583232 0.065316 145 17 SH11506 11506 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4416 4434 30.827187 76.111819 53.469503 1.728106147 0.194262 145 18 SH3441 3441 Trp1 tRNA 36 55 26.422273 80.858647 53.64046 1.729492494 -0.156831 145 19 SH9215 9215 snR6 / U6 RNA 5' 30.434909 68.984269 49.709589 1.696440172 0.268576 145 20 SH12314 12314 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.48929 120.119129 32.48929 88.629839 60.5595645 1.782182743 0.058289 145 21 SH18712 18712 YNL130C_14_381156_379555_INTRON_30_470 intron 27.493307 106.852475 27.493307 80.359168 53.9262375 1.73180012 -0.075759 145 22 SH12463 12463 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 57.073661 161.499087 57.073661 105.425426 81.2495435 1.90982093 0.202026 145 23 SH2861 2861 Pro7 3' flank 27.840912 79.701747 53.7713295 1.730550775 -0.043861 145 24 SH14866 14866 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 / 3' 28.115922 100.651822 28.115922 73.5359 50.825911 1.706085172 0.055112 145 25 SH4207 4207 telomerase RNA telomerase 71 90 30.365495 76.036632 53.2010635 1.725920314 0.166819 145 26 SH2997 2997 Ser2 5' flank 29.947177 80.5238 55.2354885 1.742218199 0.083275 145 27 SH21313 21313 YPL241C spliced 36.82404 91.667488 64.245764 1.807844498 0.109058 145 28 SH4912 4912 snR9 5' 63.735396 91.537899 77.6366475 1.890066773 0.581543 145 29 SH14335 14335 MT VAR1 includes 5’ processing site VAR1 27.600192 109.300084 27.600192 82.699892 55.150042 1.741545848 -0.097195 145 30 SH3713 3713 Val3 tRNA 46 58 79.863809 130.500107 105.181958 2.021941251 0.135275 145 31 SH5884 5884 snR35 3' 30.474443 85.0884 57.7814215 1.761788222 0.035683 145 32 SH13974 13974 MT COB Cytbi3 28.264857 96.183346 28.264857 68.918489 48.591673 1.686561852 0.127514 145 33 SH21209 21209 YOR096W spliced 33.138562 92.978093 63.0583275 1.799742448 -0.009904 145 34 SH4678 4678 snR4 5' 28.047978 75.360976 51.704477 1.71352815 0.02617 145 35 SH7442 7442 snR69 3' 29.825098 85.925421 57.8752595 1.762492951 -0.008287 145 36 SH9736 9736 RUF4 RUF4 456 471 31.673773 83.134467 57.40412 1.758943064 0.123285 145 37 SH20548 20548 YGR225W spliced 29.405972 86.664354 58.035163 1.763691209 -0.040476 145 38 SH21828 21828 copy of SH16123 34.426163 91.973586 63.1998745 1.800716216 0.044736 145 39 SH7731 7731 snoRNA cluster1 intergenic 27.716076 111.514358 27.716076 84.798282 56.257179 1.750177951 -0.114388 145 40 SH17226 17226 YHR077C_8_255757_252375_INTRON_7_119 5' exon 28.146943 108.299271 28.146943 81.152328 54.6496355 1.73758727 -0.041322 145 41 SH14905 14905 MT tRNA Ile 3' 28.444026 109.678877 28.444026 82.234851 55.3394385 1.743034748 -0.034806 145 42 SH12179 12179 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7781 7801 28.124051 71.844377 49.984214 1.698832867 0.077999 145 43 SH9541 9541 RUF3 RUF3 91 107 29.45867 81.6913 55.574985 1.744879354 0.037874 145 44 SH3105 3105 Ser4 5' flank 32.7486 86.060569 59.4045845 1.773819963 0.114437 145 45 SH10747 10747 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 621 634 45.157671 103.69027 74.4239705 1.871712836 0.027833 145 46 SH15494 15494 YBL092W_2_45639_46364_INTRON_1_333 intron 25.034931 89.663723 25.034931 65.628792 45.3318615 1.656403553 -0.055988 145 47 SH13785 13785 MT COB intronic 27.032838 101.60021 27.032838 75.567372 51.300105 1.710118254 -0.04669 145 48 SH7947 7947 snoRNA cluster1 3' 33.492622 118.418705 33.492622 85.926083 59.7093525 1.776042362 0.146924 145 49 SH17860 17860 YLL050C_12_40413_39803_INTRON_15_193 5' exon 31.916915 115.991034 31.916915 85.074119 58.495517 1.767122584 0.097842 145 50 SH1941 1941 Lys2 5' flank 28.499267 82.533524 55.5163955 1.744421261 -0.03478 145 51 SH17232 17232 YHR077C_8_255757_252375_INTRON_7_119 intron 29.072335 103.006066 29.072335 74.933731 52.003033 1.716028674 0.099449 145 52 SH14106 14106 MT COB Cytbi4 26.568455 103.083134 26.568455 77.514679 52.041567 1.716350365 -0.104475 145 53 SH8366 8366 snoRNA cluster4 3' 28.310107 103.757843 28.310107 76.447736 52.3789215 1.719156552 0.029362 145 54 SH17455 17455 YIL148W_9_68708_69528_INTRON_9_442 intron 28.368415 111.573704 28.368415 84.205289 56.286852 1.75040696 -0.063529 145 55 SH5594 5594 snR33 3' 26.815593 80.957283 53.886438 1.731479477 -0.13021 145 56 SH8348 8348 snoRNA cluster4 snR53/3' 27.563813 109.934451 27.563813 83.370638 55.4672255 1.744036443 -0.107768 145 57 SH20003 20003 YBR078W spliced 32.718892 80.883859 56.8013755 1.754358853 0.209192 145 58 SH19000 19000 YOR122C_15_552886_552297_INTRON_14_222 intron 29.101984 109.356194 29.101984 81.25421 55.178097 1.741766718 0.020293 145 59 SH12304 12304 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.773225 119.481637 29.773225 90.708412 60.2408185 1.779890864 -0.094417 145 60 SH8022 8022 snoRNA cluster 2 snR55 29.282606 97.997105 29.282606 69.714499 49.4985525 1.694592499 0.184619 145 61 SH21375 21375 Leu8_9 spliced 29.525883 75.568339 52.547111 1.720548844 0.120173 145 62 SH19386 19386 YPR043W_16_654161_654842_INTRON_3_405 intron 28.007744 102.876084 28.007744 75.86834 51.938042 1.715485573 0.016747 145 63 SH9284 9284 RUF1 5' - 12 -4 14 28.469562 78.911091 53.6903265 1.729896045 0.008192 145 64 SH13884 13884 MT COB intronic 28.142047 103.148089 28.142047 76.006042 52.0740445 1.71662131 0.023945 145 65 SH15801 15801 YDL061C_4_341182_340627_INTRON_1_408 intron 29.839988 121.341934 29.839988 92.501946 61.170967 1.786545346 -0.121708 145 66 SH12927 12927 MT COX1 COX1ai2 27.181404 117.395154 27.181404 91.21375 59.197577 1.772303931 -0.22491 145 67 SH10411 10411 RUF8 5' 29.569203 83.907331 56.738267 1.753876067 0.016946 145 68 SH12537 12537 MT_ORF6 + ORF7 (hypothetical) ORF6/7 29.998435 111.090472 29.998435 82.092037 56.045236 1.748538702 0.067186 145 69 SH7429 7429 snR69 snR69 46 63 28.056904 62.66069 45.358797 1.656661528 0.204636 145 70 SH18869 18869 YNR053C_14_723108_721117_INTRON_811_1341 intron 30.337767 111.482067 30.337767 82.1443 56.2410335 1.750053293 0.084141 145 71 SH8374 8374 snoRNA cluster 5 5' 27.149217 106.116842 27.149217 79.967625 53.558421 1.728827765 -0.094599 145 72 SH15977 15977 YDL136W_4_217600_218367_INTRON_4_408 intron 28.286743 116.844909 28.286743 89.558166 58.9224545 1.77028083 -0.143224 145 73 SH3836 3836 RNaseP RNaseP 146 158 46.183646 89.95408 68.068863 1.832948496 0.335668 145 74 SH16840 16840 YGL178W_7_167356_170575_INTRON_4_643 intron 26.602478 107.085387 26.602478 81.482909 54.0426935 1.732736986 -0.151724 145 75 SH21772 21772 copy of SH13812 27.334002 78.853589 53.0937955 1.725043773 -0.067772 145 76 SH21380 21380 Lys3_4 spliced 27.460338 80.253086 53.856712 1.731239836 -0.076697 145 77 SH11464 11464 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4206 4223 697.44427 719.057685 708.2509775 2.850187183 -0.020767 145 78 SH20689 20689 YIL133C spliced 53.048128 107.062472 80.0553 1.903390089 0.105512 145 79 SH11741 11741 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5591 5606 81.872158 137.373894 109.623026 2.039901786 0.068736 145 80 SH4525 4525 U3b (snR17b) U3b 181 197 37.133318 86.018159 61.5757385 1.789409629 0.245375 145 81 SH21276 21276 YPL129W spliced 30.22854 82.016367 56.1224535 1.749136649 0.081725 145 82 SH19653 19653 SIR1 2.2 28.027588 74.400989 51.2142885 1.709391144 0.037636 145 83 SH19798 19798 Negative Control 32.588402 96.064127 64.3262645 1.808388332 -0.090518 145 84 SH17404 17404 YIL069C_9_232366_231550_INTRON_4_412 intron 29.925235 119.457318 29.925235 90.532083 60.228659 1.779803194 -0.084591 145 85 SH13554 13554 MT COX1 intronic / exon6 28.534798 102.566881 28.534798 75.032083 51.7834405 1.714190902 0.062972 145 86 SH13600 13600 MT ATP8/AAP1 ATP8 27.13087 100.949186 27.13087 74.818316 50.974593 1.707353767 -0.03016 145 87 SH2831 2831 Pro7 5' flank 29.326195 76.489029 52.907612 1.72351816 0.095262 145 88 SH5131 5131 snR11 256-258 + 3' 256 29.543627 72.55359 51.0486085 1.707983908 0.162066 145 89 SH16149 16149 YDR092W_4_629869_630598_INTRON_31_298 intron 33.429998 130.319521 33.429998 97.889523 65.6597605 1.817299294 -0.106949 145 90 SH14711 14711 MT tRNA thr2 3' 27.619314 104.301181 27.619314 77.681867 52.6505905 1.721403246 -0.033218 145 91 SH3810 3810 RNaseP RNaseP 16 33 29.305921 89.433073 59.369497 1.773563369 -0.093686 145 92 SH13340 13340 MT COX1 COX1-ai5a 25.570937 99.095947 25.570937 74.52501 50.0479735 1.699386497 -0.140429 145 93 SH8189 8189 snoRNA cluster 3; snR70/intergenic 27.762916 154.684302 27.762916 127.921386 77.842151 1.891214828 -0.809341 145 94 SH3179 3179 Ser5 tRNA 16 30 48.273185 141.771806 95.0224955 1.977826432 -0.530502 145 95 SH16773 16773 YGL103W_7_310965_311925_INTRON_50_560 intron 32.186076 113.011178 32.186076 81.825102 57.005589 1.755917437 0.169319 145 96 SH19373 19373 YPR043W_16_654161_654842_INTRON_3_405 exon/intron 27.11462 112.34989 27.11462 86.23527 56.674945 1.753391107 -0.17255 145 97 SH4993 4993 snR10 5' - 14 -4 14 31.998945 84.503088 58.2510165 1.765303508 0.111696 145 98 SH7145 7145 snR63 snR63 231 248 30.54191 82.439423 56.4906665 1.751976699 0.087569 145 99 SH5361 5361 snR30 3' 26.627936 75.982386 51.305161 1.710161055 -0.081009 145 100 SH1702 1702 Leu6 76-84 + 3' flank 76 30.682102 75.557465 53.1197835 1.725256296 0.192692 145 101 SH3857 3857 RNaseP RNaseP 251 265 27.947129 85.289415 56.618272 1.75295661 -0.104528 145 102 SH861 861 Glu2 71-72 + 3' flank 71 25.111126 63.347482 44.229304 1.645710105 -0.014355 145 103 SH8882 8882 LSR1 / U2 RNA U2 1051 1065 32.569396 83.708898 58.139147 1.764468656 0.149953 145 104 SH3673 3673 Val2 3' flank 26.113779 75.806546 50.9601625 1.707230804 -0.116335 146 2 SH3727 3727 Val3 3' flank 29.327188 84.421923 56.8745555 1.754918015 -0.003512 146 3 SH18156 18156 YLR426W_12_987057_988108_INTRON_81_151 intron 35.082902 136.70635 35.082902 102.623448 68.853175 1.837923972 -0.162305 146 4 SH10853 10853 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1151 1166 43.994503 89.804696 66.8995995 1.825423518 0.299142 146 5 SH16846 16846 YGL178W_7_167356_170575_INTRON_4_643 3' exon 38.770752 140.842784 38.770752 103.072032 70.921392 1.850777251 -0.089065 146 6 SH20919 20919 YLR344W spliced 30.867174 74.836269 52.8517215 1.723059138 0.213626 146 7 SH6925 6925 snR58 5' - 7 -14 7 26.846501 68.507494 47.6769975 1.678308898 0.034106 146 8 SH17986 17986 YLR275W_12_694378_694800_INTRON_6_95 intron 24.527251 86.579261 24.527251 63.05201 43.7896305 1.641371281 -0.053578 146 9 SH8546 8546 snR19 / U1 RNA U1 226 240 36.624209 91.606204 64.1152065 1.806961045 0.105765 146 10 SH4112 4112 SRP RNA SRP RNA 451 465 36.455994 85.498539 60.9772665 1.785167952 0.241945 146 11 SH4765 4765 snR5 5' - 15 15 30.615957 86.268708 58.4423325 1.766727541 0.020573 146 12 SH15884 15884 YDL082W_4_308423_309387_INTRON_5_369 intron 26.914645 93.406595 26.914645 67.49195 47.2032975 1.673972338 0.053319 146 13 SH4867 4867 snR8 snR8 116 128 29.143456 81.119434 55.131445 1.741399376 0.024638 146 14 SH4638 4638 snR3 snR3 106 123 24.908288 63.623056 44.265672 1.646067062 -0.033926 146 15 SH18764 18764 YNL246W_14_185459_186348_INTRON_33_127 5' exon 31.75056 113.228813 31.75056 82.478253 57.1144065 1.756745668 0.138785 146 16 SH10264 10264 RUF7 5' 30.386986 83.205336 56.796161 1.754318982 0.066457 146 17 SH19121 19121 YPL031C_16_493033_492014_INTRON_18_119 intron/exon 28.700618 124.973147 28.700618 97.272529 62.9865735 1.799247983 -0.251606 146 18 SH13002 13002 MT COX1 COX1ai2 26.324937 95.082588 26.324937 69.757651 48.041294 1.681614697 -0.021029 146 19 SH3584 3584 Val1 5' flank 34.70857 87.716526 61.212548 1.786840458 0.147954 146 20 SH20047 20047 YBR191W spliced 46.137036 103.347208 74.742122 1.873565424 0.052944 146 21 SH19037 19037 YOR234C_15_779404_778554_INTRON_20_546 intron 24.184419 103.383601 24.184419 80.199182 52.1918005 1.717602279 -0.318202 146 22 SH5771 5771 snR35 snR35 41 59 28.296793 75.267363 51.782078 1.714179475 0.044056 146 23 SH13195 13195 MT COX1 Exon4 29.879467 103.04892 29.879467 74.169453 52.02446 1.716207581 0.16131 146 24 SH12237 12237 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.711354 105.948251 27.711354 79.236897 53.4741255 1.728143691 -0.046793 146 25 SH3983 3983 RNase MRP 331-340 + 3' 331 30.010888 83.868847 56.9398675 1.755416452 0.037501 146 26 SH9763 9763 RUF4 RUF4 591 613 28.487792 81.020558 54.754175 1.73841724 -0.017015 146 27 SH12876 12876 MT COX1 COX1ai1 26.934618 99.705193 26.934618 73.770575 50.3525965 1.70202187 -0.030608 146 28 SH21749 21749 copy of SH12970 29.299866 79.36683 54.333348 1.735066467 0.056592 146 29 SH5133 5133 snR11 3' 27.403725 66.859278 47.1315015 1.673311276 0.097038 146 30 SH5255 5255 snR30 snR30 126 138 58.399135 113.63693 86.0180325 1.934589505 0.078564 146 31 SH2940 2940 Ser1 5' flank 28.219923 88.428661 58.324292 1.765849476 -0.126755 146 32 SH14909 14909 MT tRNA Tyr 5' 26.041594 99.100531 26.041594 74.058937 50.0502655 1.699406386 -0.099285 146 33 SH19453 19453 CYC1 29.687806 73.889282 51.788544 1.714233701 0.152975 146 34 SH1935 1935 Lys1 3' flank 28.015021 73.163863 50.589442 1.704059889 0.053055 146 35 SH17280 17280 YHR141C_8_382752_381991_INTRON_5_445 intron 31.86396 131.999912 31.86396 101.135952 66.499956 1.822821358 -0.21421 146 36 SH21554 21554 copy of SH4780 45.399915 108.842568 77.1212415 1.887174012 -0.065943 146 37 SH12544 12544 MT_ORF6 + ORF7 (hypothetical) ORF6/7 / 3' 26.849301 107.249327 26.849301 81.400026 54.1246635 1.733395209 -0.133304 146 38 SH4538 4538 U3b (snR17b) U3b 246 267 27.01048 80.113303 53.5618915 1.728855905 -0.106074 146 39 SH21411 21411 Ser3 spliced 31.651205 76.752863 54.202034 1.734015584 0.235568 146 40 SH15590 15590 YBR084C-A_2_415219_414144_INTRON_3_508 3' exon 27.308801 105.002467 27.308801 78.693666 53.0012335 1.724285977 -0.067477 146 41 SH5336 5336 snR30 snR30 531 547 30.216636 86.524085 58.3703605 1.766192376 -0.001572 146 42 SH21546 21546 copy of SH4255 25.538816 79.923728 52.731272 1.722068248 -0.209961 146 43 SH14422 14422 MT 21S rRNA 21S rRNA3 27.148764 101.902638 27.148764 75.753874 51.451319 1.711396513 -0.040815 146 44 SH1040 1040 Gly3 5' flank 28.401087 84.254574 56.3278305 1.750723024 -0.061946 146 45 SH16157 16157 YDR129C_4_715372_713333_INTRON_22_132 intron 29.800934 111.939701 29.800934 83.138767 56.4698505 1.751816638 0.04163 146 46 SH2367 2367 Phe3 3' flank 29.336795 87.636863 58.486829 1.767058076 -0.060891 146 47 SH19641 19641 RNA14 2.2 35.529527 82.305664 58.9175955 1.770245014 0.292536 146 48 SH10671 10671 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 241 257 31.143891 80.174862 55.6593765 1.745538337 0.156782 146 49 SH21440 21440 TH302 - control oligo; WTP_222 29.574162 88.85504 59.214601 1.772428807 -0.07146 146 50 SH12727 12727 MT COX1 Exon1 26.146352 106.009775 26.146352 80.863423 53.5048875 1.728393455 -0.176669 146 51 SH9722 9722 RUF4 RUF4 386 403 28.878765 87.712584 58.2956745 1.765636332 -0.083288 146 52 SH20734 20734 YJL189W spliced 33.151258 91.179702 62.16548 1.793549291 0.030086 146 53 SH19198 19198 YPL081W_16_404945_406039_INTRON_8_508 intron 35.047598 115.796874 35.047598 81.749276 58.398437 1.766401224 0.28475 146 54 SH20117 20117 YDL075W spliced 30.81955 73.823797 52.3216735 1.718681626 0.224355 146 55 SH16693 16693 YGL031C_7_438393_437938_INTRON_1_456 5' exon 33.849434 117.308182 33.849434 84.458748 59.154091 1.771984785 0.187753 146 56 SH6813 6813 snR52 5' 29.865659 81.31023 55.5879445 1.744980615 0.068408 146 57 SH14674 14674 MT 21S rRNA 21S rRNA4 27.803726 116.138104 27.803726 89.334378 58.569052 1.767668195 -0.162405 146 58 SH21247 21247 YPL031C spliced 27.808569 77.033781 52.421175 1.719506751 -0.011963 146 59 SH8710 8710 LSR1 / U2 RNA U2 191 210 27.627373 73.054048 50.3407105 1.701919341 0.027663 146 60 SH7077 7077 snR62 3' 29.742377 94.561859 62.152118 1.793455933 -0.160165 146 61 SH2219 2219 Phe1 5' flank 36.969199 104.383294 70.6762465 1.849273477 -0.154288 146 62 SH18460 18460 YMR143W_13_551927_552902_INTRON_25_568 intron 27.99584 99.931427 27.99584 72.935587 50.4657135 1.702996418 0.054735 146 63 SH8373 8373 snoRNA cluster 5 5' 28.283337 110.825663 28.283337 83.542326 55.9128315 1.747511486 -0.061274 146 64 SH14775 14775 MT ORF11; tRNA Leu; tRNA Gln intergenic 28.013608 107.41018 28.013608 80.396572 54.20509 1.73404007 -0.040901 146 65 SH8500 8500 snR19 / U1 RNA 5' - 13 -4 13 29.823004 86.882978 58.352991 1.766063122 -0.025525 146 66 SH161 161 Arg2 5' flank 36.502291 103.289572 69.8959315 1.844451897 -0.143019 146 67 SH7152 7152 snR63 3' 29.564008 70.519869 50.0419385 1.699334125 0.191831 146 68 SH8677 8677 LSR1 / U2 RNA U2 26 43 29.812511 84.77215 57.2923305 1.758096489 0.012052 146 69 SH2847 2847 Pro7 tRNA-intron 41 57 30.090205 99.817651 64.953928 1.81260542 -0.236522 146 70 SH296 296 Arg4 3' flank 27.760132 71.771124 49.765628 1.696929489 0.053896 146 71 SH12050 12050 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7136 7151 31.915654 86.359604 59.137629 1.771863908 0.074589 146 72 SH19854 19854 Negative Control 33.402954 86.743124 60.073039 1.778679603 0.128696 146 73 SH846 846 Glu2 5' flank - tRNA15 15 97.152912 129.058978 113.105945 2.053485433 0.366656 146 74 SH10345 10345 RUF7 RUF7 336 353 27.214427 70.72951 48.9719685 1.689947561 0.02969 146 75 SH14099 14099 MT COB Cytbi4 27.441806 112.68786 27.441806 86.246054 56.84393 1.754684096 -0.150075 146 76 SH1476 1476 Leu2 3' flank 31.739115 94.149632 62.9443735 1.798956915 -0.07221 146 77 SH11182 11182 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2796 2811 31.487159 82.342167 56.914663 1.755224169 0.13019 146 78 SH4122 4122 SRP RNA SRP RNA 501 513 448.817893 552.287208 500.5525505 2.699449679 -0.169004 146 79 SH10626 10626 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 16 33 27.222599 70.859949 49.041274 1.690561744 0.0285 146 80 SH21431 21431 Tyr1_2 spliced 29.639756 95.030955 62.3353555 1.794734441 -0.172446 146 81 SH13803 13803 MT COB intronic 27.438981 118.756254 27.438981 92.317273 59.878127 1.777268207 -0.23089 146 82 SH8715 8715 LSR1 / U2 RNA U2 216 233 27.530946 84.172436 55.851691 1.747036327 -0.119599 146 83 SH15191 15191 MT COX3 cox3 27.383819 92.543288 27.383819 66.159469 46.771644 1.669982635 0.105735 146 84 SH14440 14440 MT 21S rRNA 21S rRNA3 38.861578 133.124663 38.861578 95.263085 67.0623315 1.826478648 0.075366 146 85 SH14096 14096 MT COB Cytbi4 27.134054 99.517377 27.134054 73.383323 50.2586885 1.701211151 -0.011351 146 86 SH21063 21063 YMR201C spliced 34.015954 103.118287 68.5671205 1.836115912 -0.197768 146 87 SH19737 19737 Negative Control 30.681352 86.26056 58.470956 1.766940195 0.023574 146 88 SH14861 14861 MT tRNA Ser2; tRNA Arg2 tRNA Ser / tRNA Arg2 27.555951 98.889189 27.555951 72.333238 49.9445945 1.698488491 0.032193 146 89 SH4043 4043 SRP RNA SRP RNA 106 125 29.081636 75.466154 52.273895 1.718284861 0.092963 146 90 SH2776 2776 Pro6 5' flank 27.909813 84.3142 56.1120065 1.749055799 -0.095531 146 91 SH16215 16215 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.519171 115.414978 29.519171 86.895807 58.207489 1.764978865 -0.039459 146 92 SH15556 15556 YBR082C_2_407127_406586_INTRON_48_142 intron 30.041336 112.454045 30.041336 83.412709 56.7270225 1.753789989 0.047294 146 93 SH1263 1263 Ile2 tRNA 11 25 40.425331 128.04104 84.2331855 1.925483225 -0.493682 146 94 SH11798 11798 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5876 5893 21321.05643 13487.85244 17404.45444 4.240660414 -0.179991 146 95 SH579 579 Gln1 5' flank 28.780916 87.367867 58.0743915 1.763984668 -0.081739 146 96 SH13083 13083 MT COX1 COX1ai3 25.63765 101.11386 25.63765 76.47621 51.05693 1.708054698 -0.160212 146 97 SH16496 16496 YER117W_5_396765_397649_INTRON_43_513 intron 28.419626 107.253439 28.419626 79.833813 54.1267195 1.733411706 -0.006755 146 98 SH19916 19916 YAL003W spliced 28.891829 68.327451 48.60964 1.686722405 0.178031 146 99 SH2964 2964 Ser1 tRNA 51 63 33.358233 89.432536 61.3953845 1.788135724 0.074694 146 100 SH3893 3893 RNaseP 3' 33.164905 95.198993 64.181949 1.807412901 -0.057159 146 101 SH834 834 Glu2 5' flank 26.259594 78.415281 52.3374375 1.718812455 -0.138078 146 102 SH4599 4599 snR3 5' 44.58577 111.029395 77.8075825 1.891021922 -0.1218 146 103 SH1644 1644 Leu5 tRNA 86 102 246.815836 374.841225 310.8285305 2.492520875 -0.306265 146 104 SH3630 3630 Val1 3' flank 27.278558 93.570174 60.424366 1.781212102 -0.259591 147 2 SH14653 14653 MT 21S rRNA 21S rRNA4 27.858941 111.420197 27.858941 84.561256 56.2100985 1.749814346 -0.101898 147 3 SH5441 5441 snR31 3' 27.380836 91.758106 59.569471 1.775023743 -0.22433 147 4 SH6757 6757 snR50 5' 29.14654 81.082286 55.114413 1.741265186 0.025296 147 5 SH18057 18057 YLR333C_12_796335_795573_INTRON_1_423 intron 27.144682 98.541263 27.144682 72.396581 49.7706315 1.696973151 0.002394 147 6 SH14837 14837 MT tRNA Asp 5' / tRNA Asp 27.619868 116.195332 27.619868 89.575464 58.597666 1.767880318 -0.175812 147 7 SH8498 8498 snR19 / U1 RNA 5' - 2 -14 2 30.018211 96.917765 63.467988 1.802554731 -0.185878 147 8 SH16148 16148 YDR092W_4_629869_630598_INTRON_31_298 intron 34.013884 128.639096 34.013884 95.625212 64.819548 1.811705998 -0.044626 147 9 SH21479 21479 copy of SH1652 24.756042 79.197696 51.976869 1.715810115 -0.261155 147 10 SH951 951 Gly1 tRNA 6 22 47.569681 117.690292 82.6299865 1.917137682 -0.180399 147 11 SH5748 5748 snR35 5' 28.435984 77.083149 52.7595665 1.722301218 0.029434 147 12 SH16440 16440 YER074W_5_306319_307192_INTRON_4_469 intron 30.728656 127.708115 30.728656 97.979459 64.3540575 1.808575934 -0.180832 147 13 SH16612 16612 YFL034C-B_6_63992_63015_INTRON_21_134 3' exon 32.71511 132.89714 32.71511 101.18203 66.94857 1.825741305 -0.192603 147 14 SH14814 14814 "MT tRNAs (Lys, Arg1, Gly)" tRNA Arg1 28.454958 150.720887 28.454958 123.265929 75.8604435 1.880015377 -0.712749 147 15 SH2773 2773 Pro6 5' flank 29.022345 87.173436 58.0978905 1.764160364 -0.067112 147 16 SH16549 16549 YER133W_5_432491_433954_INTRON_178_702 intron 27.725186 97.115082 27.725186 70.389896 49.057541 1.690705775 0.070117 147 17 SH14233 14233 MT ATP9 3' 26.000845 101.601129 26.000845 76.600284 51.3005645 1.710122144 -0.134677 147 18 SH9090 9090 snR14 / U4 RNA U4 66 87 30.436284 85.996835 58.2165595 1.765046536 0.017578 147 19 SH16931 16931 YGR001C_7_498029_497128_INTRON_36_97 3' exon 28.069004 105.659177 28.069004 78.590173 53.3295885 1.726968233 -0.014426 147 20 SH2985 2985 Ser1 3' flank 28.306941 85.525253 56.916097 1.755235111 -0.083189 147 21 SH3305 3305 Thr2 3' flank 28.833192 78.992156 53.912674 1.731690873 0.031078 147 22 SH6016 6016 snR37 5' - 12 -4 12 31.367473 85.788652 58.5780625 1.767735003 0.061662 147 23 SH4510 4510 U3b (snR17b) U3b 106 122 31.38369 81.35251 56.3681 1.751033396 0.14449 147 24 SH16809 16809 YGL137W_7_249872_252741_INTRON_19_218 3' exon 29.226301 116.337629 29.226301 88.111328 58.6688145 1.768407313 -0.074294 147 25 SH8383 8383 snoRNA cluster 5 5' 31.716564 114.350764 31.716564 83.6342 57.675382 1.76099048 0.115821 147 26 SH11474 11474 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4256 4273 204.012672 215.567388 209.79003 2.321784845 0.364046 147 27 SH4572 4572 U3b (snR17b) U3b 416 431 64.011273 123.521249 93.766261 1.972046599 0.008861 147 28 SH7172 7172 snR64 5' 35.65675 82.602431 59.1295905 1.771804871 0.291752 147 29 SH12767 12767 MT COX1 COX1ai1 29.173732 103.346475 29.173732 75.172743 52.1732375 1.717447787 0.102821 147 30 SH18852 18852 YNR053C_14_723108_721117_INTRON_811_1341 5' exon 27.468466 99.536839 27.468466 73.068373 50.2684195 1.701295231 0.016366 147 31 SH18974 18974 YOR096W_15_505793_506766_INTRON_145_545 intron 35.117873 123.913959 35.117873 89.796086 62.4569795 1.795580977 0.110394 147 32 SH6908 6908 snR58 5' 30.545029 91.131569 60.838299 1.784177063 -0.067364 147 33 SH3080 3080 Ser3 96-101 + 3' flank 96 28.301301 74.101544 51.2014225 1.709282027 0.059985 147 34 SH11913 11913 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6451 6470 223.608234 225.48759 224.547912 2.351309021 0.401954 147 35 SH3288 3288 Thr2 tRNA 41 53 429.660978 381.264768 405.462873 2.607951093 0.371114 147 36 SH13930 13930 MT COB Cytbi3 26.694863 100.100457 26.694863 74.405594 50.5502285 1.703723123 -0.056052 147 37 SH20997 20997 YML085C spliced 26.591751 66.067529 46.32964 1.665858926 0.050545 147 38 SH18996 18996 YOR122C_15_552886_552297_INTRON_14_222 intron 28.605166 97.24765 28.605166 69.642484 49.123825 1.691292176 0.140535 147 39 SH11979 11979 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6781 6798 54.680321 96.425121 75.552721 1.87825011 0.341059 147 40 SH2393 2393 Phe4 tRNA 16 28 47.077655 106.232397 76.655026 1.884540635 0.014393 147 41 SH17206 17206 YHR039C-A_8_187670_187164_INTRON_4_165 intron 29.342133 109.416294 29.342133 81.074161 55.208147 1.742003171 0.037998 147 42 SH18155 18155 YLR426W_12_987057_988108_INTRON_81_151 exon/intron 27.306142 101.55286 27.306142 75.246718 51.27643 1.709917781 -0.023238 147 43 SH2209 2209 Phe1 5' flank 40.567787 96.209398 68.3885925 1.834983666 0.09033 147 44 SH2314 2314 Phe2 3' flank 25.988183 70.206661 48.097422 1.682121799 -0.05198 147 45 SH9912 9912 RUF5-1 RUF5-1 366 385 25.450225 68.16157 46.8058975 1.670300577 -0.063717 147 46 SH1176 1176 His1 3' flank 34.823113 98.600114 66.7116135 1.824201445 -0.08674 147 47 SH9322 9322 RUF1 RUF1 186 206 26.936355 69.272948 48.1046515 1.682187073 0.029879 147 48 SH11687 11687 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5321 5341 11076.89213 8054.682155 9565.787144 3.980720713 -0.219142 147 49 SH2486 2486 Pro1 5' flank 40.631804 101.280496 70.95615 1.850990043 -0.014324 147 50 SH19644 19644 SIR1 2.2 30.438832 82.272447 56.3556395 1.750937382 0.086181 147 51 SH19516 19516 ACT1 26.396352 78.359538 52.377945 1.719148455 -0.127392 147 52 SH13170 13170 MT COX1 intronic 26.27281 106.464406 26.27281 81.191596 53.732203 1.730234647 -0.171634 147 53 SH9746 9746 RUF4 RUF4 506 520 32.944956 100.299595 66.6222755 1.823619462 -0.168832 147 54 SH19304 19304 YPL198W_16_173151_174701_INTRON_12_420 intron 31.141976 118.262288 31.141976 88.120312 59.631144 1.775473141 0.010521 147 55 SH16253 16253 YDR397C_4_1266887_1266355_INTRON_38_129 intron 29.446902 116.418104 29.446902 87.971202 58.709052 1.768705068 -0.061767 147 56 SH17568 17568 YJL189W_10_75932_76473_INTRON_7_392 intron 29.817161 105.331696 29.817161 76.514535 53.165848 1.725632745 0.126211 147 57 SH10121 10121 RUF6 RUF6 451 467 29.871397 87.545017 58.708207 1.768698817 -0.035098 147 58 SH17195 17195 YHR021C_8_148660_147862_INTRON_4_553 intron 34.559278 113.650561 34.559278 80.091283 57.3252805 1.758346188 0.297668 147 59 SH11470 11470 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4236 4249 80.056569 142.796096 111.4263325 2.046987836 -0.025519 147 60 SH218 218 Arg3 5' flank 27.518803 87.818778 57.6687905 1.760940843 -0.162889 147 61 SH8743 8743 LSR1 / U2 RNA U2 356 372 27.523523 78.227059 52.875291 1.723252771 -0.046766 147 62 SH7418 7418 snR69 5' - 12 -9 12 30.036429 74.574572 52.3055005 1.718547362 0.165729 147 63 SH8096 8096 snoRNA cluster 2 3' 32.507947 108.42956 32.507947 76.921613 54.71478 1.738104657 0.278235 147 64 SH21085 21085 YMR292W spliced 27.586952 74.375998 50.981475 1.707412396 0.007634 147 65 SH12078 12078 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7276 7296 31.951182 91.711585 61.8313835 1.791208964 -0.01694 147 66 SH2996 2996 Ser2 5' flank 27.146706 71.924096 49.535401 1.694915683 0.00882 147 67 SH13635 13635 MT ATP6 ATP6 27.115783 106.803282 27.115783 80.687499 53.901641 1.731601987 -0.105893 147 68 SH21323 21323 YPR028W spliced 30.561776 89.792659 60.1772175 1.779432103 -0.043733 147 69 SH20944 20944 YLR426W spliced 34.11552 77.574968 55.845244 1.746986193 0.329754 147 70 SH17528 17528 YJL136C_10_156971_156248_INTRON_25_484 3' exon 27.24313 101.418811 27.24313 75.175681 51.2094055 1.709349734 -0.026781 147 71 SH6574 6574 snR47 5' 27.171472 86.572833 56.8721525 1.754899666 -0.172515 147 72 SH5831 5831 snR35 snR35 341 355 131.733234 178.78361 155.258422 2.191055168 0.151717 147 73 SH6594 6594 snR47 snR47 76 92 29.830586 71.385766 50.608176 1.704220685 0.196526 147 74 SH17546 17546 YJL177W_10_90783_91654_INTRON_310_626 intron 27.783817 108.039198 27.783817 81.255381 54.519599 1.736552653 -0.067058 147 75 SH10723 10723 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 501 521 27.349929 81.663206 54.5065675 1.736448834 -0.101727 147 76 SH9462 9462 RUF2 RUF2 151 167 33.453088 89.30869 61.380889 1.788033174 0.079935 147 77 SH13790 13790 MT COB intronic 28.687244 99.020888 28.687244 71.333644 50.010444 1.69906071 0.123029 147 78 SH3548 3548 Tyr2 tRNA 11 27 31.514112 88.418814 59.966463 1.777908434 0.021189 147 79 SH6484 6484 snR46 5' 29.52799 78.453299 53.9906445 1.732318512 0.082796 147 80 SH361 361 Arg5 3' flank 29.493898 73.546082 51.51999 1.71197577 0.145289 147 81 SH10714 10714 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 456 469 38.851532 100.359468 69.6055 1.842643558 -0.032343 147 82 SH20893 20893 YLR287C-A spliced 29.601393 91.074524 60.3379585 1.780590612 -0.108395 147 83 SH4024 4024 SRP RNA SRP RNA 11 23 40.195744 86.185333 63.1905385 1.800652056 0.309167 147 84 SH18387 18387 YMR116C_13_500687_499455_INTRON_538_810 intron 27.22147 98.151115 27.22147 71.929645 49.5755575 1.695267607 0.014043 147 85 SH18652 18652 YNL112W_14_413636_416278_INTRON_1274_2275 intron 31.623332 111.543958 31.623332 80.920626 56.271979 1.750292189 0.162906 147 86 SH18823 18823 YNL302C_14_62942_61957_INTRON_21_571 intron 29.13361 118.343286 29.13361 90.209676 59.671643 1.775767996 -0.114954 147 87 SH7804 7804 snoRNA cluster1 snR75/intergenic 29.288519 97.110143 29.288519 68.821624 49.0550715 1.690683913 0.197377 147 88 SH20958 20958 YML025C spliced 29.763025 79.981082 54.8720535 1.739351213 0.078424 147 89 SH8395 8395 snoRNA cluster 5 snR190 64.62505 172.557319 64.62505 108.932269 86.7786595 1.938412937 0.256567 147 90 SH10323 10323 RUF7 RUF7 226 243 30.206341 73.603205 51.904773 1.715207296 0.189484 147 91 SH7157 7157 snR63 3' 27.275723 70.209016 48.7423695 1.687906638 0.04111 147 92 SH16447 16447 YER074W_5_306319_307192_INTRON_4_469 intron/exon 28.200857 93.718835 28.200857 66.517978 47.3594175 1.675406352 0.157168 147 93 SH10043 10043 RUF6 RUF6 61 77 30.783121 137.562627 84.172874 1.925172156 -0.87394 147 94 SH6242 6242 snR42 5' - 11 -9 11 29.684035 99.491541 64.587788 1.810150411 -0.241493 147 95 SH12252 12252 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 38.01131 134.563736 38.01131 97.552426 67.781868 1.831113533 0.008182 147 96 SH9940 9940 RUF5-1 RUF5-1 506 523 28.232136 59.116846 43.674491 1.640227852 0.274858 147 97 SH8162 8162 snoRNA cluster 3; snR70 54.063569 169.517409 54.063569 116.45384 85.2587045 1.930738729 -0.042051 147 98 SH789 789 Glu1 5' flank 29.396995 64.958216 47.1776055 1.673735894 0.259935 147 99 SH380 380 Asn1 5' flank 29.652213 91.130349 60.391281 1.780974242 -0.107047 147 100 SH14331 14331 MT VAR1 includes 5’ processing site VAR1 29.465109 106.538469 29.465109 78.07336 53.7692345 1.730533854 0.08364 147 101 SH13919 13919 MT COB Cytbi3 26.797402 101.9053 26.797402 76.107898 51.45265 1.711407747 -0.070376 147 102 SH1522 1522 Leu3 tRNA 81 97 3715.891129 4206.860703 3961.375916 3.597846057 -0.61317 147 103 SH14270 14270 MT VAR1 includes 5’ processing site VAR1 27.222246 103.065118 27.222246 76.842872 52.032559 1.716275185 -0.04963 147 104 SH19952 19952 YBL050W spliced 592.508414 481.354318 536.931366 2.729918775 0.407376 148 2 SH7119 7119 snR63 snR63 101 120 28.493538 83.987456 56.240497 1.75004915 -0.052643 148 3 SH1953 1953 Lys2 5' flank 28.255025 77.520007 52.887516 1.72335317 0.011747 148 4 SH6388 6388 snR43 snR43 181 197 27.985628 67.399289 47.6924585 1.67844971 0.129784 148 5 SH20014 20014 YBR084C-A spliced 30.199493 94.029491 62.114492 1.793192938 -0.131017 148 6 SH13694 13694 MT ORF 5 (hypothetical) 3' 28.290749 99.36209 28.290749 72.071341 50.181045 1.700539701 0.086354 148 7 SH19362 19362 YPR028W_16_623522_624197_INTRON_52_184 exon/intron 28.436395 109.562364 28.436395 82.125969 55.281182 1.74257732 -0.033985 148 8 SH4528 4528 U3b (snR17b) U3b 196 212 30.468225 83.859285 57.163755 1.757120749 0.057919 148 9 SH18866 18866 YNR053C_14_723108_721117_INTRON_811_1341 intron 27.841186 110.326547 27.841186 83.485361 55.6632735 1.745568743 -0.090279 148 10 SH14768 14768 MT ORF11; tRNA Leu; tRNA Gln orf11 / tRNA Leu 25.218984 101.614216 25.218984 77.395232 51.307108 1.710177536 -0.203383 148 11 SH14522 14522 MT 21S rRNA 21S rRNA3 34.50936 122.641844 34.50936 89.132484 61.820922 1.791135478 0.110516 148 12 SH16593 16593 YFL034C-A_6_64931_64242_INTRON_13_333 intron 28.760191 112.380019 28.760191 84.619828 56.6900095 1.75350653 -0.042603 148 13 SH20178 20178 YDL189W spliced 28.187228 94.156419 61.1718235 1.786551427 -0.225396 148 14 SH6202 6202 snR40 snR40 71 88 51.066699 120.002451 85.534575 1.932141702 -0.154293 148 15 SH20653 20653 YIL004C spliced 5212.580448 2811.807239 4012.193844 3.603381907 0.465459 148 16 SH15513 15513 YBR048W_2_332790_333771_INTRON_46_556 intron 26.736415 101.303508 26.736415 75.567093 51.151754 1.70886053 -0.067921 148 17 SH7855 7855 snoRNA cluster1 intergenic 29.422717 106.034499 29.422717 77.611782 53.5172495 1.728493785 0.086864 148 18 SH21264 21264 YPL081W spliced 36.582835 96.526834 66.5548345 1.823179608 -0.001534 148 19 SH18580 18580 YNL044W_14_545264_545873_INTRON_25_103 intron/exon 28.192532 105.807952 28.192532 78.61542 53.403976 1.727573592 -0.006474 148 20 SH21354 21354 YPR187W spliced 251.73973 262.614076 257.176903 2.410231962 0.297963 148 21 SH7776 7776 snoRNA cluster1 intergenic 29.021152 114.647545 29.021152 86.626393 57.8237725 1.762106422 -0.057429 148 22 SH6771 6771 snR50 snR50 31 48 28.825189 80.162597 54.493893 1.736347835 0.015828 148 23 SH1162 1162 His1 tRNA 31 43 40.022567 95.11943 67.5709985 1.829760337 0.102698 148 24 SH11559 11559 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4681 4697 30098.29473 13844.0113 21971.15302 4.341852849 0.229019 148 25 SH18428 18428 YMR142C_13_551206_550205_INTRON_5_406 intron 31.0669 114.232591 31.0669 84.165691 57.6162955 1.760545331 0.078321 148 26 SH18261 18261 YML056C_13_164176_162194_INTRON_461_868 intron 28.752103 107.953705 28.752103 80.201602 54.4768525 1.736212007 0.010558 148 27 SH5650 5650 snR34 snR34 171 191 29.61 64.300444 46.955222 1.671683898 0.283605 148 28 SH11515 11515 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4461 4477 39.966526 97.178255 68.5723905 1.83614929 0.057377 148 29 SH20110 20110 YDL064W spliced 70.128937 144.380006 107.2544715 2.030415407 -0.187329 148 30 SH32 32 Ala1 tRNA 56 68 29.311951 93.010665 61.161308 1.786476765 -0.154089 148 31 SH17985 17985 YLR275W_12_694378_694800_INTRON_6_95 intron 29.550337 111.7036 29.550337 83.153263 56.3518 1.750907793 0.025969 148 32 SH20607 20607 YHR077C spliced 181.008272 212.341832 196.675052 2.293749274 0.24321 148 33 SH18641 18641 YNL112W_14_413636_416278_INTRON_1274_2275 5' exon 32.651979 115.364029 32.651979 83.71205 58.1820145 1.764788754 0.153285 148 34 SH580 580 Gln1 5' flank 27.928003 73.922014 50.9250085 1.70693111 0.037172 148 35 SH17664 17664 YKL006C-A_11_430270_429836_INTRON_37_177 5' exon 27.344129 110.504922 27.344129 84.160793 55.752461 1.746264043 -0.132289 148 36 SH16431 16431 YER074W_5_306319_307192_INTRON_4_469 intron 33.523079 127.765924 33.523079 95.242845 64.382962 1.808770953 -0.048913 148 37 SH2164 2164 Met2 5' flank 27.233156 75.785798 51.509477 1.71188714 -0.035242 148 38 SH9497 9497 RUF2 3' 54.084036 97.163724 75.62388 1.878658956 0.316064 148 39 SH15998 15998 YDL137W_4_216158_217074_INTRON_1_332 exon/intron 34.146217 119.997607 34.146217 86.85139 60.4988035 1.781746786 0.15412 148 40 SH13216 13216 MT COX1 COX1-ai4 95.839882 327.630537 95.839882 232.790655 164.3152685 2.215677921 -0.674207 148 41 SH93 93 Ala2 3' flank 29.071956 85.081719 57.0768375 1.756459902 -0.027738 148 42 SH2516 2516 Pro1 71-72 + 3' flank 71 26.968243 78.931318 52.9497805 1.723864164 -0.094141 148 43 SH17960 17960 YLR185W_12_522665_523290_INTRON_8_366 intron 28.499415 110.43835 28.499415 82.938935 55.719175 1.746004677 -0.039676 148 44 SH3805 3805 RNaseP 5' - 3 3 34.275104 96.227262 65.251183 1.81458839 -0.050832 148 45 SH10511 10511 RUF8 RUF8 481 502 27.228981 82.603442 54.9162115 1.739700569 -0.12154 148 46 SH1657 1657 Leu5 3' flank 29.252435 72.201599 50.727017 1.705239324 0.148272 148 47 SH4444 4444 telomerase RNA telomerase 1256 1270 66.552058 129.524913 98.0384855 1.991396594 -0.041408 148 48 SH9296 9296 RUF1 RUF1 56 73 29.472082 70.799047 50.1355645 1.700145909 0.182007 148 49 SH16586 16586 YFL034C-A_6_64931_64242_INTRON_13_333 intron 29.937569 126.394145 29.937569 97.456576 63.6970725 1.804119473 -0.198055 148 50 SH16737 16737 YGL076C_7_365994_364333_INTRON_565_1032 intron 30.52684 114.696659 30.52684 85.169819 57.8483295 1.762290822 0.036503 148 51 SH8380 8380 snoRNA cluster 5 5' 26.335787 107.563065 26.335787 82.227278 54.2815325 1.7346521 -0.179813 148 52 SH17738 17738 YKL156W_11_158616_159214_INTRON_4_353 intron 49.301944 172.690567 49.301944 124.388623 86.8452835 1.938746237 -0.257182 148 53 SH4280 4280 telomerase RNA telomerase 436 455 26.687202 74.507141 50.5971715 1.704126239 -0.057914 148 54 SH8791 8791 LSR1 / U2 RNA U2 596 612 29.453158 82.718625 56.0858915 1.748853627 0.025009 148 55 SH11160 11160 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S/ITS1 2686 2710 27.512738 74.255664 50.884201 1.706582959 0.004 148 56 SH11205 11205 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2911 2929 32.309431 74.643884 53.4766575 1.728164254 0.302246 148 57 SH15554 15554 YBR082C_2_407127_406586_INTRON_48_142 5' exon 27.442211 108.746428 27.442211 82.304217 54.873214 1.739360398 -0.103209 148 58 SH9383 9383 RUF1 RUF1 491 508 36.656698 92.674646 64.665672 1.810673795 0.082975 148 59 SH12674 12674 MT tRNA Trp 5' 27.177923 98.883907 27.177923 72.705984 49.9419535 1.698465526 0.000658 148 60 SH2880 2880 Pro8 5' flank 29.41728 73.660164 51.538722 1.712133645 0.138836 148 61 SH20572 20572 YHR012W spliced 26.931284 92.911112 59.921198 1.777580488 -0.265805 148 62 SH21239 21239 YOR312C spliced 92.232386 163.763124 127.997755 2.107202352 -0.113402 148 63 SH13998 13998 MT COB intronic 27.053395 108.500656 27.053395 82.447261 54.750328 1.738386725 -0.131834 148 64 SH19791 19791 Negative Control 34.085136 90.56337 62.324253 1.794657082 0.067604 148 65 SH10377 10377 RUF7 496-500 + 3' 496 31.740614 90.336737 61.0386755 1.785605101 -0.002423 148 66 SH11228 11228 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3026 3046 29.403205 88.259954 58.8315795 1.769610508 -0.068824 148 67 SH21733 21733 copy of SH12133 36.287862 88.434207 62.3610345 1.794913311 0.16944 148 68 SH6013 6013 snR37 5' 26.899822 71.985535 49.4426785 1.69410199 -0.009593 148 69 SH8497 8497 snR19 / U1 RNA 5' 35.815227 79.249969 57.532598 1.759913986 0.361782 148 70 SH20235 20235 YDR305C spliced 26.551975 82.320185 54.43608 1.735886844 -0.16554 148 71 SH11002 11002 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1896 1912 5866.32511 4292.842946 5079.584028 3.705828149 -0.050906 148 72 SH10159 10159 RUF6 RUF6 641 660 31.934014 91.838419 61.8862165 1.791593932 -0.019797 148 73 SH7888 7888 snoRNA cluster1 intergenic 27.832504 107.724535 27.832504 80.892031 54.3622675 1.735297563 -0.059272 148 74 SH4791 4791 snR5 snR5 126 144 27.952836 86.029137 56.9909865 1.755806175 -0.112789 148 75 SH14755 14755 MT ORF11; tRNA Leu; tRNA Gln ORF11 27.235531 93.495752 27.235531 67.260221 47.247876 1.67438229 0.079444 148 76 SH180 180 Arg2 16-28 16 28 49.66725 112.385811 81.0265305 1.908627243 -0.049979 148 77 SH9075 9075 snR14 / U4 RNA 5' - 9 -9 9 28.717495 74.446955 51.582225 1.712500072 0.082835 148 78 SH9680 9680 RUF4 RUF4 176 197 29.365249 73.774209 51.569729 1.712394849 0.133952 148 79 SH17137 17137 YHR010W_8_126513_127484_INTRON_32_592 intron 29.678531 99.088233 29.678531 70.409702 50.0441165 1.699353026 0.200681 148 80 SH17308 17308 YHR203C_8_505526_504472_INTRON_15_283 intron 29.553198 115.234922 29.553198 86.681724 58.117461 1.764306633 -0.034101 148 81 SH6513 6513 snR46 snR46 56 72 29.4834 95.354553 62.4189765 1.795316643 -0.184784 148 82 SH15152 15152 MT tRNA Thr1 reverse complement 3' 25.068256 91.259245 25.068256 67.190989 46.1296225 1.663979901 -0.077408 148 83 SH2758 2758 Pro5 3' flank 27.537675 88.556728 58.0472015 1.763781287 -0.169976 148 84 SH14484 14484 MT 21S rRNA 21S rRNA3 27.400476 97.626363 27.400476 71.225887 49.3131815 1.692963022 0.0361 148 85 SH1645 1645 Leu5 tRNA 91 108 26.956659 77.339111 52.147885 1.717236699 -0.074547 148 86 SH8501 8501 snR19 / U1 RNA U1 1 18 33.377339 96.615709 64.996524 1.812890131 -0.081699 148 87 SH3708 3708 Val3 tRNA 21 36 35.808093 90.858768 63.3334305 1.801633013 0.10314 148 88 SH14807 14807 "MT tRNAs (Lys, Arg1, Gly)" intergenic 27.061407 93.81901 27.061407 67.757603 47.409505 1.675865421 0.060022 148 89 SH15506 15506 YBR048W_2_332790_333771_INTRON_46_556 intron 27.363106 115.647466 27.363106 89.28436 58.323733 1.765845313 -0.190151 148 90 SH13384 13384 MT COX1 Exon 5b 29.816781 108.240281 29.816781 79.4235 54.6201405 1.737352813 0.088828 148 91 SH2044 2044 Lys3 3' flank 28.382143 95.286661 61.834402 1.791230165 -0.234632 148 92 SH8331 8331 snoRNA cluster4 intergenic/snR53 28.622044 117.927531 28.622044 90.305487 59.4637655 1.774252407 -0.140307 148 93 SH10576 10576 RUF8 RUF8 806 822 33.930797 117.875149 75.902973 1.880258787 -0.475575 148 94 SH12547 12547 MT_ORF6 + ORF7 (hypothetical) 3' 27.688341 105.779836 27.688341 79.091495 53.389918 1.727459254 -0.04652 148 95 SH18486 18486 YMR194W_13_651144_651909_INTRON_17_479 intron 28.611556 125.488314 28.611556 97.876758 63.244157 1.801020408 -0.265346 148 96 SH19381 19381 YPR043W_16_654161_654842_INTRON_3_405 intron 28.885408 125.792567 28.885408 97.907159 63.3962835 1.802063799 -0.253077 148 97 SH9481 9481 RUF2 RUF2 246 262 42.564765 101.163165 71.863965 1.856511175 0.027196 148 98 SH8047 8047 snoRNA cluster 2 intergenic 27.80966 114.126668 27.80966 87.317008 57.563334 1.76014594 -0.137342 148 99 SH13933 13933 MT COB Cytbi3 28.096451 95.274932 28.096451 68.178481 48.137466 1.682483225 0.126365 148 100 SH1129 1129 Gly4 3' flank 28.891612 88.118279 58.5049455 1.767192579 -0.089832 148 101 SH4868 4868 snR8 snR8 121 133 33.629348 95.449476 64.539412 1.809825004 -0.050609 148 102 SH5788 5788 snR35 snR35 126 145 28.761413 82.825255 55.793334 1.746582314 -0.021061 148 103 SH4153 4153 SRP RNA SRP RNA 656 673 28.631399 77.708544 53.1699715 1.725666428 0.034248 148 104 SH15089 15089 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.635231 106.441905 28.635231 78.806674 53.7209525 1.730143704 0.02045 149 2 SH18726 18726 YNL147W_14_350937_351380_INTRON_19_138 intron 30.782158 111.46022 30.782158 81.678062 56.23011 1.749968933 0.112409 149 3 SH7233 7233 snR65 5' 28.37591 69.942906 49.159408 1.691606644 0.120908 149 4 SH13347 13347 MT COX1 COX1-ai5a 28.191896 108.123644 28.191896 80.931748 54.561822 1.736888864 -0.03559 149 5 SH411 411 Asn1 3' flank 34.823638 89.443418 62.133528 1.793326014 0.111193 149 6 SH18562 18562 YMR292W_13_854795_855293_INTRON_23_104 intron/exon 27.157486 109.890316 27.157486 83.73283 55.445158 1.743863625 -0.14009 149 7 SH8399 8399 snoRNA cluster 5 snR190 28.395865 98.298822 28.395865 70.902957 49.649411 1.695914101 0.10918 149 8 SH12706 12706 MT ORF 8 (hypothetical) ORF8 27.343356 98.852914 27.343356 72.509558 49.926457 1.698330748 0.014941 149 9 SH3623 3623 Val1 3' flank 28.495153 81.745438 55.1202955 1.741311537 -0.025446 149 10 SH15767 15767 YCR097W_3_293828_294314_INTRON_106_159 5' exon 28.33681 104.324183 28.33681 76.987373 52.6620915 1.721498103 0.024096 149 11 SH18115 18115 YLR367W_12_855877_857316_INTRON_698_1180 intron/exon 27.939921 102.9453 27.939921 76.005379 51.97265 1.715774861 0.010372 149 12 SH351 351 Arg5 3' flank 139.035016 183.476905 161.2559605 2.207515776 0.171996 149 13 SH1424 1424 Leu1 3' flank 28.721788 76.107604 52.414696 1.719453071 0.061029 149 14 SH2904 2904 Pro8 tRNA 41 55 30.128039 84.796756 57.4623975 1.759383742 0.025694 149 15 SH1150 1150 His1 5' flank 27.916681 85.107042 56.5118615 1.752139613 -0.104438 149 16 SH15797 15797 YDL061C_4_341182_340627_INTRON_1_408 intron 36.700716 126.029209 36.700716 90.328493 63.5146045 1.802873598 0.136071 149 17 SH21343 21343 YPR098C spliced 37.517552 87.156541 62.3370465 1.794746222 0.227476 149 18 SH11994 11994 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6856 6869 53.527573 116.301363 84.914468 1.928981693 -0.048969 149 19 SH8154 8154 snoRNA cluster 3; intergenic/snR70 28.316204 88.935024 28.316204 61.61882 44.967512 1.652898859 0.238442 149 20 SH6636 6636 snR48 snR48 6 25 55.920353 103.254298 79.5873255 1.900843911 0.22476 149 21 SH7444 7444 snR69 3' 26.736503 77.79119 52.2638465 1.71820137 -0.095834 149 22 SH8058 8058 snoRNA cluster 2 intergenic 31.171961 113.43194 31.171961 83.259979 57.21597 1.757517265 0.099577 149 23 SH18779 18779 YNL265C_14_145280_144279_INTRON_28_132 intron 28.620973 106.496328 28.620973 78.875355 53.748164 1.730363634 0.01864 149 24 SH15640 15640 YBR186W_2_600511_602318_INTRON_1552_1664 intron 30.658615 116.757881 30.658615 87.099266 58.8789405 1.769959986 0.007614 149 25 SH13267 13267 MT COX1 cox1ai4/intronic 26.036393 109.533976 26.036393 84.497583 55.266988 1.742465797 -0.228625 149 26 SH836 836 Glu2 5' flank 28.324928 74.126202 51.225565 1.709486757 0.061224 149 27 SH14646 14646 MT 21S rRNA intronic 26.182119 105.865109 26.182119 80.68299 53.4325545 1.727805937 -0.171857 149 28 SH14883 14883 MT tRNA Ala tRNA 28.565485 105.289094 28.565485 77.723609 53.144547 1.72545871 0.029711 149 29 SH238 238 Arg3 46-58 46 58 62.088346 131.069299 96.5788225 1.984881906 -0.133674 149 30 SH20286 20286 YDR471W spliced 31.355834 78.464463 54.9101485 1.739652618 0.19582 149 31 SH5162 5162 snR13 5' 26.523564 76.433528 51.478546 1.711626272 -0.094253 149 32 SH20093 20093 YDL012C spliced 31.250378 87.416161 59.3332695 1.77329828 0.027583 149 33 SH5503 5503 snR32 176-188+3' 176 27.24803 74.757208 51.002619 1.707592478 -0.021078 149 34 SH5711 5711 snR34 snR34 476 493 27.731806 75.639994 51.6859 1.713372083 0.00111 149 35 SH16230 16230 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.775596 105.589215 29.775596 76.813619 53.2946075 1.726683268 0.119677 149 36 SH16722 16722 YGL033W_7_435621_436347_INTRON_56_125 5' exon 35.889086 126.698914 35.889086 91.809828 63.849457 1.805157208 0.083925 149 37 SH8063 8063 snoRNA cluster 2 snR61 37.288606 128.138963 37.288606 91.850357 64.5694815 1.810027299 0.115726 149 38 SH5466 5466 snR32 5' - 8 -9 8 29.937853 87.171441 58.554647 1.767561367 -0.025509 149 39 SH7734 7734 snoRNA cluster1 intergenic 39.183257 125.438892 39.183257 87.255635 63.219446 1.800850686 0.262299 149 40 SH2134 2134 Met1 tRNA 56 68 30.919392 84.658595 57.7889935 1.761845131 0.062918 149 41 SH19211 19211 YPL081W_16_404945_406039_INTRON_8_508 intron 27.134262 105.144285 27.134262 79.010023 53.0721425 1.72486662 -0.083575 149 42 SH19288 19288 YPL175W_16_218629_220087_INTRON_18_117 5' exon 27.082742 105.273903 27.082742 79.191161 53.1369515 1.725396635 -0.089449 149 43 SH15429 15429 YBL072C_2_89435_88518_INTRON_1_308 intron 39.978096 136.012853 39.978096 97.034757 68.5064265 1.835731314 0.060663 149 44 SH12111 12111 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7441 7454 479.038566 444.505731 461.7721485 2.664427735 0.26313 149 45 SH18659 18659 YNL112W_14_413636_416278_INTRON_1274_2275 intron 44.744415 156.93578 44.744415 113.191365 78.96789 1.897450534 -0.157432 149 46 SH5627 5627 snR34 snR34 56 73 29.273622 89.793069 59.5333455 1.774760289 -0.101377 149 47 SH8099 8099 snoRNA cluster 3; 5' 31.652228 117.520076 31.652228 86.867848 59.260038 1.772761926 0.054418 149 48 SH17070 17070 YGR214W_7_920570_921783_INTRON_91_545 3' exon 27.605168 114.459468 27.605168 87.8543 57.729734 1.761399556 -0.15739 149 49 SH20678 20678 YIL106W spliced 30.243042 83.351261 56.7971515 1.754326555 0.057391 149 50 SH14599 14599 MT 21S rRNA Sce1 endonuc 26.179855 96.973129 26.179855 71.793274 48.9865645 1.690076983 -0.059273 149 51 SH7153 7153 snR63 3' 30.869999 82.259264 56.5646315 1.752544962 0.105254 149 52 SH18238 18238 YML026C_13_223828_222987_INTRON_48_448 intron 26.701344 108.057515 26.701344 82.356171 54.5287575 1.736625602 -0.155408 149 53 SH15296 15296 MT 9S rRNA 3' 27.21327 101.557108 27.21327 75.343838 51.278554 1.70993577 -0.031037 149 54 SH346 346 Arg5 66-72 + 3' flank 66 3' flank 29.968418 74.536356 52.252387 1.718106135 0.161971 149 55 SH7149 7149 snR63 251-255 + 3' 251 27.801898 71.917997 49.8599475 1.697751817 0.05483 149 56 SH691 691 Gln3 5' flank - tRNA2 5' flank 2 30.162305 92.329341 61.245823 1.787076475 -0.10444 149 57 SH15989 15989 YDL136W_4_217600_218367_INTRON_4_408 intron 27.602504 117.061973 27.602504 90.459469 59.0309865 1.771080041 -0.191488 149 58 SH21917 21917 copy of SH20000 33.252369 86.544668 59.8985185 1.777416081 0.126192 149 59 SH6154 6154 snR39B 3' 29.425274 73.00513 51.215202 1.70939889 0.148291 149 60 SH11711 11711 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5441 5454 1247.140253 888.861162 1068.000708 3.02857154 0.406365 149 61 SH21090 21090 YNL012W spliced 47.438322 101.721598 74.57996 1.872622146 0.108941 149 62 SH12720 12720 MT COX1 5' 26.406212 90.169572 26.406212 64.76336 45.584786 1.65881992 0.057179 149 63 SH18223 18223 YML026C_13_223828_222987_INTRON_48_448 intron 35.872621 125.531115 35.872621 90.658494 63.2655575 1.801167339 0.109159 149 64 SH11442 11442 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4096 4112 17219.54655 11213.31874 14216.43265 4.152790632 -0.166968 149 65 SH19531 19531 CBP1 1.2 27.161297 84.56007 55.8606835 1.747106245 -0.149668 149 66 SH5066 5066 snR11 5' 29.596689 72.865561 51.231125 1.709533893 0.161151 149 67 SH2395 2395 Phe4 tRNA-exon/intron 26 42 33.079291 88.792639 60.935965 1.784873693 0.079538 149 68 SH15388 15388 YBL040C_2_142830_142074_INTRON_23_119 exon/intron 27.084702 111.663954 27.084702 85.579252 56.331977 1.750754993 -0.166985 149 69 SH4523 4523 U3b (snR17b) U3b 171 188 28.848394 78.125046 53.48672 1.728245966 0.043122 149 70 SH9886 9886 RUF5-1 RUF5-1 236 248 39.772966 91.28018 65.526573 1.816417455 0.182531 149 71 SH104 104 Ala2 3' flank 30.799549 88.894273 59.846911 1.777041739 -0.017805 149 72 SH16187 16187 YDR367W_4_1212837_1213603_INTRON_31_131 intron 29.371483 109.386011 29.371483 81.014528 55.1930055 1.741884044 0.040619 149 73 SH8031 8031 snoRNA cluster 2 snR55 32.62482 119.493246 32.62482 87.868426 60.246623 1.779932708 0.077208 149 74 SH1783 1783 Leu8 5' flank 28.026841 84.781259 56.40405 1.751310289 -0.093178 149 75 SH12012 12012 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6946 6964 29.786904 76.607221 53.1970625 1.725887652 0.123086 149 76 SH15907 15907 YDL083C_4_307788_306925_INTRON_25_456 intron 29.135806 116.334461 29.135806 88.198655 58.6672305 1.768395587 -0.079977 149 77 SH8548 8548 snR19 / U1 RNA U1 236 250 54.628049 110.441974 82.5350115 1.916638216 0.070449 149 78 SH113 113 Arg1 5' flank 29.918618 85.152887 57.5357525 1.759937798 0.009874 149 79 SH1822 1822 Leu8 3' flank 30.073097 87.398677 58.735887 1.768903532 -0.023503 149 80 SH12297 12297 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.841273 101.408467 29.841273 72.567194 51.2042335 1.709305869 0.180766 149 81 SH9022 9022 snR17a / U3a U3a 396 413 36.748337 89.100746 62.9245415 1.79882006 0.16497 149 82 SH1706 1706 Leu6 3' flank 29.824785 81.910852 55.8678185 1.747161714 0.058459 149 83 SH18411 18411 YMR125W_13_517538_520445_INTRON_26_347 intron/exon 29.911738 102.508672 29.911738 73.596934 51.754336 1.713946741 0.171103 149 84 SH21480 21480 copy of SH1653 27.206096 86.145438 56.675767 1.753397406 -0.165161 149 85 SH19955 19955 YBL059C-A spliced 26.578827 84.714951 55.646889 1.74544089 -0.192346 149 86 SH15332 15332 YAL003W_1_142172_143158_INTRON_81_446 3' exon 32.944099 121.865953 32.944099 89.921854 61.4329765 1.788401558 0.052936 149 87 SH1487 1487 Leu3 5' flank 28.626699 77.581572 53.1041355 1.725128343 0.035576 149 88 SH759 759 Gln4 66-72 + 3' flank 66 26.715538 65.317242 46.01639 1.662912545 0.070448 149 89 SH5850 5850 snR35 snR35 436 453 43.229213 107.761423 75.495318 1.877920019 -0.087687 149 90 SH7413 7413 snR69 5' 29.429809 75.732243 52.581026 1.720829056 0.111863 149 91 SH5465 5465 snR32 5' - 3 -14 3 31.785866 94.909479 63.3476725 1.801730663 -0.087275 149 92 SH895 895 Glu3 5' flank - tRNA5 5 28.984537 78.812032 53.8982845 1.731574942 0.043227 149 93 SH5484 5484 snR32 snR32 81 98 28.103631 60.78812 44.4458755 1.647831465 0.238 149 94 SH18170 18170 YLR448W_12_1028848_1029762_INTRON_16_399 intron 36.10792 141.209455 36.10792 106.101535 71.1047275 1.851898476 -0.207359 149 95 SH14836 14836 MT tRNA Asp 5' 27.252078 98.279752 27.252078 72.027674 49.639876 1.695830688 0.0149 149 96 SH8614 8614 snR19 / U1 RNA U1 566 582 29.607921 74.474542 52.0412315 1.716347565 0.139999 149 97 SH13886 13886 MT COB intronic 27.859071 92.774351 27.859071 65.91528 46.8871755 1.671054071 0.142419 149 98 SH17173 17173 YHR021C_8_148660_147862_INTRON_4_553 exon/intron 28.343742 111.877302 28.343742 84.53356 56.438651 1.751576625 -0.069064 149 99 SH21890 21890 copy of SH18800 28.474118 71.998406 50.236262 1.701017317 0.099767 149 100 SH19325 19325 YPL218W_16_138697_139408_INTRON_29_167 intron 27.988348 97.267943 27.988348 70.279595 49.1339715 1.69138187 0.089815 149 101 SH17810 17810 YKR057W_11_551293_551878_INTRON_25_346 intron 27.206603 98.936314 27.206603 72.729711 49.968157 1.698693331 0.002376 149 102 SH20412 20412 YFR032C-A spliced 37.261787 105.450783 71.356285 1.853432231 -0.168789 149 103 SH4632 4632 snR3 snR3 76 93 28.356828 83.690612 56.02372 1.748371943 -0.05816 149 104 SH10233 10233 RUF6 RUF6 1011 1031 28.012368 82.338734 55.175551 1.741746679 -0.064883 150 2 SH16393 16393 YER044C-A_5_239773_238459_INTRON_64_151 intron 32.744665 116.458624 32.744665 84.713959 58.729312 1.768854913 0.138673 150 3 SH16068 16068 YDR005C_4_458099_456832_INTRON_7_86 intron 30.282313 124.662522 30.282313 95.380209 62.831261 1.798175776 -0.149416 150 4 SH8264 8264 snoRNA cluster4 snR67 32.289028 118.07853 32.289028 86.789502 59.539265 1.774803469 0.082474 150 5 SH6856 6856 snR56 5' 29.898258 75.529414 52.713836 1.721924621 0.144303 150 6 SH1916 1916 Lys1 tRNA 36 53 8086.391314 9974.911257 9030.651286 3.955719073 -0.967555 150 7 SH12242 12242 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.051396 94.997942 30.051396 65.946546 47.998971 1.681231927 0.287845 150 8 SH3806 3806 RNaseP 5' - 10 10 39.29082 93.973602 66.632211 1.823684224 0.112514 150 9 SH1666 1666 Leu5 3' flank 28.410311 84.696407 56.553359 1.752458405 -0.066571 150 10 SH7537 7537 snR79 snR79 26 42 28.560169 80.218395 54.389282 1.735513326 -0.002272 150 11 SH843 843 Glu2 5' flank - tRNA2 2 30.69605 95.79394 63.244995 1.801026163 -0.137949 150 12 SH2299 2299 Phe2 91-92 + 3' flank 91 30.285653 67.648797 48.967225 1.689905493 0.278344 150 13 SH16278 16278 YDR447C_4_1355542_1354818_INTRON_4_317 intron 29.598613 117.961238 29.598613 89.362625 59.480619 1.774375479 -0.079166 150 14 SH13379 13379 MT COX1 intronic / exon 5b 28.868081 110.457608 28.868081 82.589527 55.728804 1.746079723 -0.011232 150 15 SH3545 3545 Tyr2 5' flank - tRNA10 10 32.727022 114.383536 73.555279 1.866613847 -0.443274 150 16 SH20749 20749 YJR021C spliced 35.14803 110.607356 72.877693 1.862594616 -0.315312 150 17 SH18025 18025 YLR306W_12_744151_744851_INTRON_4_137 intron 25.131585 84.923315 25.131585 60.79173 42.9616575 1.633081028 0.029017 150 18 SH480 480 Asp2 5' flank 32.432229 85.020885 58.726557 1.76883454 0.120247 150 19 SH13808 13808 MT COB Cytbi2 28.388263 102.580941 28.388263 75.192678 51.7904705 1.714249856 0.05113 150 20 SH15904 15904 YDL083C_4_307788_306925_INTRON_25_456 intron 28.464644 108.509205 28.464644 81.044561 54.7546025 1.73842063 -0.018843 150 21 SH11071 11071 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2241 2256 30.851919 76.747388 53.7996535 1.730779479 0.187447 150 22 SH2121 2121 Met1 5' flank - tRNA3 8 28.84365 84.931645 56.8876475 1.755017975 -0.040825 150 23 SH7385 7385 snR68 3' 28.871885 96.28952 62.5807025 1.796440434 -0.22793 150 24 SH5628 5628 snR34 snR34 61 77 30.674689 83.926533 57.300611 1.758159253 0.065718 150 25 SH11147 11147 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2621 2639 33617.47698 17539.08971 25578.28335 4.407871394 -0.000119 150 26 SH3466 3466 Trp1 3' flank 43.802217 100.272844 72.0375305 1.857558816 0.069687 150 27 SH18876 18876 YNR053C_14_723108_721117_INTRON_811_1341 intron 28.422819 117.398109 28.422819 89.97529 59.1990545 1.77231477 -0.143989 150 28 SH5513 5513 snR32 3' 29.011953 86.799315 57.905634 1.762720821 -0.060938 150 29 SH11744 11744 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5606 5623 8864.292332 5886.218007 7375.25517 3.867777051 -0.013186 150 30 SH5187 5187 snR13 snR13 91 108 29.030741 77.05429 53.0425155 1.724624112 0.068811 150 31 SH21487 21487 copy of SH1853 2084.337635 3535.545593 2809.941614 3.448697296 -1.09072 150 32 SH14409 14409 MT 21S rRNA 21S rRNA3 49.590977 155.288998 49.590977 106.698021 78.144499 1.892898411 0.052117 150 33 SH2763 2763 Pro6 5' flank 26.910603 83.328175 55.119389 1.741304395 -0.152447 150 34 SH345 345 Arg5 61-72 + 3' flank 61 3' flank 582.570275 713.547763 648.059019 2.811614559 -0.242517 150 35 SH19934 19934 YBL026W spliced 30.0361 99.435628 64.735864 1.811144949 -0.230274 150 36 SH20697 20697 YIL148W spliced 27.103995 69.732167 48.418081 1.685007573 0.035487 150 37 SH11804 11804 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5906 5919 22222.71076 11793.97973 17008.34525 4.230662063 0.086112 150 38 SH891 891 Glu3 5' flank 28.357341 64.40572 46.3815305 1.666345075 0.19879 150 39 SH1707 1707 Leu6 3' flank 26.444185 79.902874 53.1735295 1.725695488 -0.143364 150 40 SH1652 1652 Leu5 3' flank 27.11696 74.510139 50.8135495 1.705979533 -0.027187 150 41 SH5426 5426 snR31 snR31 196 212 29.884209 89.760857 59.822533 1.776864798 -0.073192 150 42 SH14112 14112 MT COB intronic 27.360881 104.34179 27.360881 77.980909 52.670895 1.721570698 -0.054778 150 43 SH10681 10681 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 291 306 323.249721 580.701017 451.975369 2.655114768 -0.669107 150 44 SH4269 4269 telomerase RNA telomerase 381 399 28.259414 70.041183 49.1502985 1.69152616 0.111638 150 45 SH16908 16908 YGL232W_7_62074_63001_INTRON_58_115 intron 25.61447 100.273879 25.61447 75.659409 50.6369395 1.704467449 -0.15165 150 46 SH12782 12782 MT COX1 COX1ai1 31.940431 126.982595 31.940431 96.042164 63.9912975 1.806120916 -0.10722 150 47 SH785 785 Glu1 5' flank 27.473489 73.249188 50.3613385 1.702097264 0.014346 150 48 SH2843 2843 Pro7 tRNA 21 36 34.116566 83.142681 58.6296235 1.768117105 0.222569 150 49 SH17800 17800 YKL190W_11_82949_83552_INTRON_53_128 5' exon 27.852955 93.842496 27.852955 66.989541 47.421248 1.675972979 0.126484 150 50 SH18210 18210 YML025C_13_225365_224406_INTRON_28_126 5' exon 28.155259 111.834583 28.155259 84.679324 56.4172915 1.751412233 -0.08336 150 51 SH20486 20486 YGL232W spliced 32.981954 96.139274 64.560614 1.809967652 -0.081846 150 52 SH6899 6899 snR56 3' 29.085496 92.942328 61.013912 1.785428871 -0.163332 150 53 SH13341 13341 MT COX1 COX1-ai5a 27.464107 109.063088 27.464107 82.598981 55.031544 1.740611698 -0.105285 150 54 SH20214 20214 YDR064W spliced 31.393029 92.332139 61.862584 1.791428057 -0.050959 150 55 SH9559 9559 RUF3 RUF3 181 197 35.144198 92.112085 63.6281415 1.803649238 0.059324 150 56 SH19181 19181 YPL079W_16_406631_407534_INTRON_12_432 intron 137.249849 328.768191 137.249849 192.518342 164.8840955 2.217178766 0.075124 150 57 SH9435 9435 RUF2 RUF2 16 33 30.138986 85.922461 58.0307235 1.763657985 0.005778 150 58 SH21007 21007 YML094W spliced 27.590267 81.670882 54.6305745 1.737435768 -0.085337 150 59 SH2024 2024 Lys3 tRNA 66 80 70.330041 141.572013 105.951027 2.025105171 -0.14823 150 60 SH7026 7026 snR62 5' 31.800076 98.690473 65.2452745 1.814549063 -0.166221 150 61 SH3666 3666 Val2 71-74 + 3' flank 71 29.013078 70.620654 49.816866 1.697376402 0.154419 150 62 SH19419 19419 YPR132W_16_794960_795762_INTRON_66_430 intron 33.487448 129.277091 33.487448 96.789643 65.1385455 1.813838057 -0.082536 150 63 SH16698 16698 YGL031C_7_438393_437938_INTRON_1_456 intron 26.792519 113.437353 26.792519 87.644834 57.2186765 1.757537808 -0.2113 150 64 SH19168 19168 YPL079W_16_406631_407534_INTRON_12_432 exon/intron 31.747918 114.776328 31.747918 84.02841 57.888164 1.762589776 0.109869 150 65 SH9908 9908 RUF5-1 RUF5-1 346 365 29.703197 80.564408 55.1338025 1.741417946 0.067357 150 66 SH3033 3033 Ser2 3' flank 29.870982 88.530612 59.200797 1.772327554 -0.052436 150 67 SH5898 5898 snR36 5' 27.641558 79.320727 53.4811425 1.728200676 -0.052604 150 68 SH309 309 Arg4 3' flank 32.210887 87.129543 59.670215 1.775757603 0.073182 150 69 SH21188 21188 YOL120C spliced 26.979423 74.0637 50.5215615 1.703476765 -0.031213 150 70 SH8034 8034 snoRNA cluster 2 snR55 35.407168 133.359176 35.407168 98.952008 67.179588 1.827237336 -0.079758 150 71 SH11251 11251 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3141 3159 284.107343 483.100174 383.6037585 2.583882854 -0.537468 150 72 SH12047 12047 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7121 7134 31.763317 93.156394 62.4598555 1.795600975 -0.050022 150 73 SH13269 13269 MT COX1 intronic 27.923391 96.773057 27.923391 69.849666 48.8865285 1.689189199 0.091229 150 74 SH6065 6065 snR37 snR37 241 257 30.618525 76.554682 53.5866035 1.729056231 0.175656 150 75 SH7883 7883 snoRNA cluster1 snR73 100.285409 256.955713 100.285409 157.670304 128.9778565 2.110515155 0.048026 150 76 SH18237 18237 YML026C_13_223828_222987_INTRON_48_448 intron 32.171112 122.624212 32.171112 91.4531 61.812106 1.791073541 -0.003392 150 77 SH17254 17254 YHR097C_8_298611_297387_INTRON_126_249 3' exon 27.591276 107.938268 27.591276 81.346992 54.469134 1.736150471 -0.081289 150 78 SH15028 15028 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.969712 95.357138 27.969712 68.387426 48.178569 1.682853896 0.114722 150 79 SH19993 19993 YBR048W spliced 30.429387 92.308308 61.3688475 1.787947967 -0.092288 150 80 SH21459 21459 copy of SH635 27.845466 80.343941 54.0947035 1.733154745 -0.051588 150 81 SH15559 15559 YBR082C_2_407127_406586_INTRON_48_142 intron 30.041873 111.415786 30.041873 82.373913 56.207893 1.749797306 0.06648 150 82 SH3498 3498 Tyr1 tRNA-exon/intron 31 48 32.393427 94.081994 63.2377105 1.800976138 -0.053309 150 83 SH9381 9381 RUF1 RUF1 481 495 136.41519 235.789137 186.1021635 2.269751422 -0.274489 150 84 SH14470 14470 MT 21S rRNA 21S rRNA3 29.172602 111.85393 29.172602 83.681328 56.426965 1.751486692 -0.00461 150 85 SH21713 21713 copy of SH11293 49.138502 104.011875 76.5751885 1.884088075 0.094728 150 86 SH196 196 Arg2 3' flank 27.079708 69.214533 48.1471205 1.682570319 0.04091 150 87 SH20115 20115 YDL075W spliced 30.622894 85.50478 58.063837 1.763905732 0.034636 150 88 SH15987 15987 YDL136W_4_217600_218367_INTRON_4_408 intron 26.372422 98.259477 26.372422 72.887055 49.6297385 1.695741987 -0.059669 150 89 SH6688 6688 snR49 5' 26.542689 73.102091 49.82239 1.697424557 -0.050102 150 90 SH7401 7401 snR69 5' 26.840569 82.144976 54.4927725 1.736338905 -0.143038 150 91 SH10475 10475 RUF8 RUF8 301 320 29.385275 76.383827 52.884551 1.723328821 0.100432 150 92 SH10645 10645 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 111 133 29.191173 71.092334 50.1417535 1.700199518 0.159816 150 93 SH6530 6530 snR46 snR46 141 162 28.53826 73.246224 50.892242 1.706651584 0.087319 150 94 SH1679 1679 Leu6 5' flank 32.311821 188.587569 110.449695 2.043164521 -1.463995 150 95 SH2859 2859 Pro7 101-103 + 3' flank 101 29.894257 105.213968 67.5541125 1.829651793 -0.349023 150 96 SH5889 5889 snR36 5' 30.109369 95.508256 62.8088125 1.798020582 -0.159157 150 97 SH12952 12952 MT COX1 COX1ai2 28.288442 108.67234 28.288442 81.383898 54.83617 1.739067114 -0.034726 150 98 SH12931 12931 MT COX1 COX1ai2 30.829816 116.331632 30.829816 86.501816 58.665816 1.768385116 0.025715 150 99 SH8540 8540 snR19 / U1 RNA U1 196 215 28.514059 76.588702 52.5513805 1.720584129 0.041043 150 100 SH18191 18191 YML024W_13_225889_226697_INTRON_4_401 intron 30.181714 111.727344 30.181714 82.54563 56.363672 1.750999279 0.069699 150 101 SH2705 2705 Pro5 5' flank 37.050068 90.516736 63.783402 1.804707679 0.139941 150 102 SH16606 16606 YFL034C-B_6_63992_63015_INTRON_21_134 intron 28.820138 106.264538 28.820138 78.4444 53.632269 1.729426171 0.037191 150 103 SH1015 1015 Gly2 66-72 + 3' flank 66 82 28.254875 73.998024 51.1264495 1.708645634 0.058291 150 104 SH21746 21746 copy of SH12761 43.026999 106.891582 74.9592905 1.874825467 -0.075267 151 2 SH12035 12035 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7061 7086 27.753418 69.729293 48.7413555 1.687897603 0.081125 151 3 SH4654 4654 snR3 186-195 + 3' 186 29.822079 81.378261 55.60017 1.745076119 0.06482 151 4 SH10213 10213 RUF6 RUF6 911 928 27.341861 78.140824 52.7413425 1.72215118 -0.058139 151 5 SH2216 2216 Phe1 5' flank 31.429293 95.143886 63.2865895 1.801311692 -0.101927 151 6 SH19279 19279 YPL143W_16_282121_282969_INTRON_20_544 intron 29.274798 111.856059 29.274798 83.581261 56.4280295 1.751494885 0.003177 151 7 SH5769 5769 snR35 snR35 31 45 33.881242 95.253365 64.5673035 1.81001265 -0.040054 151 8 SH13980 13980 MT COB intronic 26.545844 94.76041 26.545844 69.214566 47.880205 1.680156001 0.002564 151 9 SH5986 5986 snR36 3' 27.825595 69.22097 48.5232825 1.685950172 0.093148 151 10 SH3138 3138 Ser4 96-101 + 3' flank 96 27.925508 64.945245 46.4353765 1.666848971 0.161233 151 11 SH3008 3008 Ser2 tRNA 1 13 188.562584 262.847599 225.7050915 2.353541356 -0.061564 151 12 SH9220 9220 snR6 / U6 RNA 5' 26.885669 74.81037 50.8480195 1.706274042 -0.047542 151 13 SH17201 17201 YHR021C_8_148660_147862_INTRON_4_553 3' exon 27.615844 93.931913 27.615844 67.316069 47.4659565 1.676382237 0.105353 151 14 SH10580 10580 RUF8 RUF8 826 843 27.128773 68.915536 48.0221545 1.681441641 0.04855 151 15 SH2990 2990 Ser2 5' flank 29.132962 82.958805 56.0458835 1.74854372 0.001511 151 16 SH21788 21788 copy of SH14443 27.440343 99.595862 63.5181025 1.802897516 -0.348222 151 17 SH18412 18412 YMR125W_13_517538_520445_INTRON_26_347 3' exon 30.317496 110.951449 30.317496 81.633953 55.9757245 1.747999723 0.092722 151 18 SH10427 10427 RUF8 RUF8 61 82 28.479821 73.276605 50.878213 1.706531849 0.083041 151 19 SH15207 15207 MT COX3 cox3 26.071336 87.141669 26.071336 62.070333 44.0708345 1.644151274 0.076484 151 20 SH21735 21735 copy of SH12340 34.539045 91.785268 63.1621565 1.800456949 0.051696 151 21 SH2027 2027 Lys3 tRNA 81 93 32.307505 95.360366 63.8339355 1.80505162 -0.082986 151 22 SH10516 10516 RUF8 RUF8 506 528 26.231369 81.086005 53.658687 1.729640042 -0.173305 151 23 SH12525 12525 MT_ORF6 + ORF7 (hypothetical) ORF6/7 26.621382 92.800702 26.621382 67.17932 46.900351 1.671176093 0.036676 151 24 SH14960 14960 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 27.351884 93.860449 27.351884 67.508565 47.4302245 1.67605518 0.084117 151 25 SH20717 20717 YJL136C spliced 43.640037 102.535465 73.087751 1.863844598 0.021249 151 26 SH8717 8717 LSR1 / U2 RNA U2 226 243 25.499085 78.414093 51.956589 1.715640631 -0.194661 151 27 SH16775 16775 YGL103W_7_310965_311925_INTRON_50_560 intron 28.482755 96.760089 28.482755 69.277334 48.8800445 1.689131593 0.13732 151 28 SH6448 6448 snR45 snR45 86 102 370.280125 622.211304 496.2457145 2.695696769 -0.606594 151 29 SH6573 6573 snR47 5' 29.78957 90.039463 59.9145165 1.777532059 -0.082232 151 30 SH11321 11321 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3491 3508 29511.90213 19825.27177 24668.58695 4.392144273 -0.363748 151 31 SH6386 6386 snR43 snR43 171 188 31.279953 81.541711 56.410832 1.751362505 0.136465 151 32 SH4550 4550 U3b (snR17b) U3b 306 328 28.910405 77.817335 53.36387 1.727247318 0.051119 151 33 SH19100 19100 YOR312C_15_901173_900242_INTRON_2_427 intron 31.738404 116.525057 31.738404 85.786653 58.7625285 1.769100475 0.077432 151 34 SH13164 13164 MT COX1 intronic 30.022562 108.301647 30.022562 79.279085 54.6508235 1.73759671 0.103609 151 35 SH13277 13277 MT COX1 Exon 5a 27.899989 104.185237 27.899989 77.285248 52.5926185 1.720924794 -0.009042 151 36 SH16689 16689 YGL030W_7_439087_439634_INTRON_4_233 intron 27.55654 108.001621 27.55654 81.445081 54.5008105 1.736402961 -0.084869 151 37 SH20332 20332 YER074W spliced 31.50221 73.836807 52.6695085 1.721559266 0.265458 151 38 SH11581 11581 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4791 4807 97.173441 113.982815 105.578128 2.023573957 0.590912 151 39 SH5016 5016 snR10 snR10 111 127 56.580525 122.198026 89.3892755 1.951285417 -0.092112 151 40 SH8664 8664 LSR1 / U2 RNA 5' 29.846338 68.524699 49.1855185 1.691837254 0.23786 151 41 SH18695 18695 YNL112W_14_413636_416278_INTRON_1274_2275 3' exon 32.383478 118.671501 32.383478 87.288023 59.8357505 1.776960743 0.077523 151 42 SH2902 2902 Pro8 tRNA 31 43 29.762137 82.250934 56.0065355 1.748238709 0.050349 151 43 SH14000 14000 MT COB intronic 27.082468 104.59803 27.082468 78.515562 52.799015 1.722625821 -0.080889 151 44 SH10289 10289 RUF7 RUF7 56 77 29.067903 85.923962 57.4959325 1.759637122 -0.042679 151 45 SH17599 17599 YJL205C-A_10_50443_50139_INTRON_33_175 5' exon 30.943787 113.862818 30.943787 83.919031 57.431409 1.759149471 0.077547 151 46 SH3141 3141 Ser4 3' flank 30.415038 72.210739 51.3128885 1.710226463 0.22158 151 47 SH8543 8543 snR19 / U1 RNA U1 211 228 29.845634 83.365794 56.605714 1.752860273 0.039417 151 48 SH3609 3609 Val1 tRNA 41 53 33.853106 90.70718 62.280143 1.794349601 0.058543 151 49 SH1071 1071 Gly3 3' flank 27.42161 84.846476 56.134043 1.749226323 -0.135082 151 50 SH10907 10907 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1421 1439 15633.4565 10977.65224 13305.55437 4.124032974 -0.259463 151 51 SH6661 6661 snR48 3' 41.948189 106.003262 73.9757255 1.869089233 -0.080104 151 52 SH13297 13297 MT COX1 COX1-ai5a 26.718251 92.71345 26.718251 66.995199 46.856725 1.670771931 0.046304 151 53 SH10556 10556 RUF8 RUF8 706 723 32.098498 79.622332 55.860415 1.747104158 0.207888 151 54 SH1562 1562 Leu4 5' flank 27.823229 72.15213 49.9876795 1.698862977 0.053188 151 55 SH17668 17668 YKL006C-A_11_430270_429836_INTRON_37_177 intron 27.924734 107.637477 27.924734 80.712743 54.3187385 1.734949675 -0.050817 151 56 SH1789 1789 Leu8 5' flank 27.784665 71.429993 49.607329 1.695545844 0.060169 151 57 SH8221 8221 snoRNA cluster 3; snR51 27.581995 104.261096 27.581995 77.679101 52.630548 1.721237892 -0.035729 151 58 SH2792 2792 Pro6 tRNA-intron 51 67 62.092151 171.428623 116.760387 2.067295526 -0.629252 151 59 SH15758 15758 YCR031C_3_178212_177492_INTRON_8_314 intron 27.815592 107.159141 27.815592 80.343549 54.0795705 1.733033234 -0.053606 151 60 SH5670 5670 snR34 snR34 271 290 27.837788 86.305064 57.071426 1.756418724 -0.123766 151 61 SH21796 21796 copy of SH14861 27.488609 77.670621 52.579615 1.720817402 -0.04201 151 62 SH16559 16559 YER133W_5_432491_433954_INTRON_178_702 intron 29.480993 116.957609 29.480993 88.476616 58.9788045 1.770695965 -0.069081 151 63 SH229 229 Arg3 1-13 1 13 31.861641 79.485947 55.673794 1.745650818 0.200627 151 64 SH18806 18806 YNL301C_14_64561_63569_INTRON_113_544 intron 29.784422 105.059245 29.784422 76.274823 53.0296225 1.724518536 0.127283 151 65 SH18102 18102 YLR367W_12_855877_857316_INTRON_698_1180 intron 29.914347 111.720833 29.914347 82.806486 56.3604165 1.750974194 0.052909 151 66 SH17268 17268 YHR123W_8_354817_356083_INTRON_51_141 intron 32.305942 120.449781 32.305942 89.143839 60.7248905 1.78336674 0.041769 151 67 SH13773 13773 MT COB intronic 25.41392 101.523664 25.41392 77.109744 51.261832 1.709794123 -0.185008 151 68 SH7875 7875 snoRNA cluster1 snR73 27.83509 94.175959 27.83509 67.340869 47.5879795 1.677497266 0.120229 151 69 SH19376 19376 YPR043W_16_654161_654842_INTRON_3_405 intron 27.481001 112.184144 27.481001 85.703143 56.592072 1.752755595 -0.141064 151 70 SH16384 16384 YER007C-A_5_166884_166236_INTRON_12_114 intron 29.191431 115.683386 29.191431 87.491955 58.341693 1.765979028 -0.064979 151 71 SH1199 1199 Ile1 5' flank 33.745412 79.873953 56.8096825 1.754422362 0.269975 151 72 SH18980 18980 YOR096W_15_505793_506766_INTRON_145_545 intron 29.698432 122.73917 29.698432 94.040738 61.869585 1.791477203 -0.153595 151 73 SH4119 4119 SRP RNA SRP RNA 486 498 27.941584 80.81379 54.377687 1.735420731 -0.050933 151 74 SH568 568 Cys1 3' flank 28.084425 81.146373 54.615399 1.737315111 -0.045438 151 75 SH6227 6227 snR42 5' 27.705116 77.262284 52.4837 1.720024444 -0.021951 151 76 SH15443 15443 YBL087C_2_60732_59815_INTRON_43_546 5' exon 110.434644 333.049139 110.434644 223.614495 167.0245695 2.222780361 -0.437525 151 77 SH10293 10293 RUF7 RUF7 76 93 27.410042 82.526665 54.9683535 1.740112728 -0.108121 151 78 SH3427 3427 Trp1 5' flank 27.715153 83.299526 55.5073395 1.744350412 -0.096596 151 79 SH17839 17839 YKR094C_11_618384_617630_INTRON_9_376 intron 27.875826 104.381736 27.875826 77.50591 52.690868 1.721735353 -0.013529 151 80 SH20652 20652 YIL004C spliced 215.143851 225.948938 220.5463945 2.343499962 0.350981 151 81 SH13311 13311 MT COX1 COX1-ai5a 27.961944 102.4592 27.961944 75.497256 51.7296 1.71373912 0.018573 151 82 SH19233 19233 YPL090C_16_378390_377286_INTRON_7_400 intron 27.954294 106.257522 27.954294 79.303228 53.628761 1.729397763 -0.031185 151 83 SH1624 1624 Leu5 5' flank - tRNA5 5 30.015974 84.858343 57.4371585 1.759192947 0.019583 151 84 SH19496 19496 YPT1 30.502145 85.59359 58.0478675 1.76378627 0.027742 151 85 SH20700 20700 YJL001W spliced 26.45643 87.206175 56.8313025 1.75458761 -0.230061 151 86 SH8972 8972 snR17a / U3a U3a 146 162 34.103357 90.995688 62.5495225 1.796223999 0.05839 151 87 SH17965 17965 YLR185W_12_522665_523290_INTRON_8_366 intron 57.079219 169.086068 57.079219 113.006849 85.043034 1.929638746 0.067639 151 88 SH21865 21865 copy of SH19500 37.322259 88.267115 62.794687 1.7979229 0.197304 151 89 SH9941 9941 RUF5-1 RUF5-1 511 527 28.311859 64.939431 46.625645 1.668624853 0.18778 151 90 SH1661 1661 Leu5 3' flank 35.47326 101.108631 68.2909455 1.834363126 -0.122528 151 91 SH15003 15003 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 26.783232 96.947986 26.783232 71.164754 48.973993 1.689965515 -0.006954 151 92 SH9245 9245 snR6 / U6 RNA 96-112 + 3' 96 26.734727 71.355328 49.0450275 1.690594982 -0.013011 151 93 SH6181 6181 snR40 5' 30.812994 145.077236 87.945115 1.944211721 -0.980988 151 94 SH7315 7315 snR66 snR66 66 85 25.941058 63.258576 44.599817 1.649333077 0.04785 151 95 SH4348 4348 telomerase RNA telomerase 776 793 34.634332 85.120122 59.877227 1.777261679 0.206367 151 96 SH12193 12193 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7851 7866 30.372172 95.095112 62.733642 1.797500501 -0.140819 151 97 SH1899 1899 Lys1 5' flank 31.763394 90.285762 61.024578 1.785504785 -0.00059 151 98 SH14992 14992 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.499326 111.104022 28.499326 83.604696 56.052011 1.748591199 -0.047687 151 99 SH7215 7215 snR64 3' 28.31953 69.925455 49.1224925 1.691280395 0.117317 151 100 SH10586 10586 RUF8 RUF8 856 868 32.352111 90.190738 61.2714245 1.787257977 0.025619 151 101 SH15251 15251 MT tRNA fMet 3' 27.56826 110.831445 27.56826 84.263185 55.9157225 1.747533941 -0.118125 151 102 SH3676 3676 Val2 3' flank 28.19308 80.172691 54.1828855 1.73386213 -0.026076 151 103 SH5282 5282 snR30 snR30 261 276 32.899235 92.553942 62.7265885 1.797451668 -0.006814 151 104 SH2163 2163 Met2 5' flank 27.916902 75.963084 51.939993 1.715501887 0.009377 152 2 SH535 535 Cys1 5' flank 29.62945 82.517909 56.0736795 1.748759055 0.038686 152 3 SH8002 8002 snoRNA cluster 2 intergenic 29.152575 112.273638 29.152575 84.121063 56.636819 1.753098853 -0.011151 152 4 SH3293 3293 Thr2 66-72 + 3' flank 66 28.688519 77.016483 52.852501 1.723065543 0.04696 152 5 SH4445 4445 telomerase RNA telomerase 1261 1273 157.477911 184.165965 170.821938 2.232543645 0.314151 152 6 SH1439 1439 Leu2 5' flank 30.90959 96.425231 63.6674105 1.803917186 -0.143344 152 7 SH13593 13593 MT ATP8/AAP1 5' 27.147661 95.791961 27.147661 69.6443 48.3959805 1.684809293 0.039797 152 8 SH2013 2013 Lys3 tRNA 11 25 33.872503 92.224431 63.048467 1.799674531 0.025347 152 9 SH1607 1607 Leu5 5' flank 29.284306 118.33785 73.811078 1.868121548 -0.605342 152 10 SH7764 7764 snoRNA cluster1 snR76 35.479028 152.462105 35.479028 117.983077 76.7310525 1.884971155 -0.440753 152 11 SH17543 17543 YJL177W_10_90783_91654_INTRON_310_626 intron 26.953796 119.932352 26.953796 93.978556 60.466176 1.781512504 -0.282358 152 12 SH14813 14813 "MT tRNAs (Lys, Arg1, Gly)" tRNA Arg1 27.123746 116.225952 27.123746 90.102206 58.612976 1.767993773 -0.215835 152 13 SH21311 21311 YPL241C spliced 29.106107 104.883244 66.9946755 1.826040288 -0.365466 152 14 SH19996 19996 YBR048W spliced 92.912973 145.676171 119.294572 2.076620683 0.101561 152 15 SH13271 13271 MT COX1 intronic/exon5 40.139848 167.549951 40.139848 128.410103 84.2749755 1.925698635 -0.505745 152 16 SH15031 15031 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.463796 97.807483 24.463796 74.343687 49.4037415 1.693759841 -0.223332 152 17 SH21340 21340 YPR098C spliced 26.133981 72.938265 49.536123 1.694922013 -0.077834 152 18 SH17258 17258 YHR101C_8_315970_314876_INTRON_111_197 exon/intron 28.566122 105.525925 28.566122 77.959803 53.2629625 1.726425318 0.026715 152 19 SH8803 8803 LSR1 / U2 RNA U2 656 670 57.82256 106.389419 82.1059895 1.914374839 0.19677 152 20 SH3861 3861 RNaseP RNaseP 271 283 36.536036 86.521416 61.528726 1.789077923 0.21967 152 21 SH2913 2913 Pro8 tRNA 86 101 36.406791 89.773145 63.089968 1.799960307 0.141722 152 22 SH8186 8186 snoRNA cluster 3; snR70 34.935864 124.796383 34.935864 90.860519 62.8981915 1.798638158 0.082023 152 23 SH2077 2077 Lys4 tRNA-intron/exon 51 67 59.945653 153.928751 106.937202 2.029128817 -0.46874 152 24 SH5126 5126 snR11 snR11 231 250 26.343876 75.559652 50.951764 1.707159224 -0.09631 152 25 SH7858 7858 snoRNA cluster1 intergenic 27.98774 104.293066 27.98774 77.305326 52.646533 1.721369776 -0.003385 152 26 SH2933 2933 Pro8 3' flank 106.695857 154.208524 130.4521905 2.115451376 0.157259 152 27 SH17649 17649 YJR145C_10_702761_701720_INTRON_15_270 intron 33.373684 125.863582 33.373684 93.489898 63.431791 1.802306974 -0.015008 152 28 SH8259 8259 snoRNA cluster4 5' 29.649082 108.079685 29.649082 79.430603 54.5398425 1.736713879 0.078112 152 29 SH14211 14211 MT ATP9 5' 27.701724 102.987341 27.701724 76.285617 51.9936705 1.715950478 -0.009444 152 30 SH371 371 Asn1 5' flank 27.557716 79.051543 53.3046295 1.726764929 -0.054924 152 31 SH9574 9574 RUF3 RUF3 256 270 31.978144 89.954542 60.966343 1.785090145 0.014114 152 32 SH3909 3909 RNase MRP 5' 27.28422 80.112641 53.6984305 1.729961592 -0.087066 152 33 SH21018 21018 YMR033W spliced 27.491214 86.473518 56.982366 1.755740478 -0.149323 152 34 SH3786 3786 Val4 3' flank 31.29299 85.616419 58.4547045 1.766819469 0.061589 152 35 SH9311 9311 RUF1 RUF1 131 147 30.271301 87.30524 58.7882705 1.769290684 -0.013056 152 36 SH18522 18522 YMR225C_13_721402_720959_INTRON_59_205 intron 27.519935 103.123373 27.519935 76.603438 52.0616865 1.716518233 -0.026012 152 37 SH510 510 Asp2 3' flank 28.952986 80.834007 54.8934965 1.739520895 0.015812 152 38 SH17061 17061 YGR214W_7_920570_921783_INTRON_91_545 intron 30.777249 106.723723 30.777249 76.946474 53.8618615 1.731281359 0.180288 152 39 SH17647 17647 YJR145C_10_702761_701720_INTRON_15_270 intron 29.051584 111.306527 29.051584 83.254943 56.1532635 1.749375002 -0.007328 152 40 SH9116 9116 snR14 / U4 RNA 3' 27.466462 67.007377 47.2369195 1.674281568 0.099318 152 41 SH12676 12676 MT tRNA Trp 5' 27.630255 101.40146 27.630255 74.771205 51.20073 1.709276153 0.00557 152 42 SH388 388 Asn1 21-33 21 33 34.415359 97.901125 66.158242 1.820583956 -0.082361 152 43 SH18438 18438 YMR142C_13_551206_550205_INTRON_5_406 intron 31.799647 104.231634 31.799647 73.431987 52.615817 1.721116318 0.288669 152 44 SH13710 13710 MT tRNAGlu (and 5' processing site for COB) 3' 29.426223 116.57294 29.426223 88.146717 58.78647 1.769277383 -0.065791 152 45 SH4155 4155 SRP RNA 666-675 + 3' 666 29.201429 78.411371 53.8064 1.730833936 0.062377 152 46 SH12455 12455 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.63625 105.156515 28.63625 77.520265 53.0782575 1.724916657 0.036996 152 47 SH10517 10517 RUF8 RUF8 511 532 27.879748 73.928967 50.9043575 1.70675496 0.033751 152 48 SH20409 20409 YFR032C-A spliced 33.834509 100.703395 67.268952 1.827814662 -0.154218 152 49 SH3875 3875 RNaseP RNaseP 341 356 31.651928 87.844554 59.748241 1.776325124 0.037109 152 50 SH6731 6731 snR49 3' 30.005096 71.472876 50.738986 1.705341784 0.206295 152 51 SH16581 16581 YER179W_5_548416_549512_INTRON_133_224 3' exon 28.40262 110.957449 28.40262 83.554829 55.9787245 1.748022999 -0.053494 152 52 SH17149 17149 YHR012W_8_129473_130440_INTRON_49_167 exon/intron 28.946097 112.016867 28.946097 84.07077 56.5084335 1.752113268 -0.023945 152 53 SH8528 8528 snR19 / U1 RNA U1 136 153 31.77886 90.198365 60.9886125 1.785248753 0.00156 152 54 SH17759 17759 YKL157W_11_154993_158183_INTRON_282_664 intron 27.464587 106.328553 27.464587 79.863966 53.6642765 1.729685279 -0.071539 152 55 SH4858 4858 snR8 snR8 71 87 74.999862 159.171175 117.0855185 2.068503184 -0.292374 152 56 SH12606 12606 MT_15S MT_15S 29.885017 124.452135 29.885017 95.567118 62.7260675 1.797448061 -0.17012 152 57 SH20315 20315 YER044C-A spliced 36.865217 89.984896 63.4250565 1.802260863 0.147633 152 58 SH8891 8891 LSR1 / U2 RNA U2 1096 1108 37.037571 100.695438 68.8665045 1.83800804 -0.078577 152 59 SH4053 4053 SRP RNA SRP RNA 156 173 30.327748 89.064636 59.696192 1.775946629 -0.041428 152 60 SH8942 8942 snR17a / U3a 5' - 10 -4 10 28.153385 85.084194 56.6187895 1.75296058 -0.088261 152 61 SH5581 5581 snR33 3' 27.821852 68.593655 48.2077535 1.683116894 0.101625 152 62 SH11892 11892 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6346 6361 246.515158 282.530136 264.522647 2.42246286 0.152138 152 63 SH19823 19823 Negative Control 29.758106 83.791397 56.7747515 1.754155242 0.027609 152 64 SH3783 3783 Val4 3' flank 27.687268 88.209367 57.9483175 1.763040831 -0.155833 152 65 SH16579 16579 YER179W_5_548416_549512_INTRON_133_224 intron 30.047678 103.654157 30.047678 74.606479 52.3270785 1.718726488 0.166006 152 66 SH18172 18172 YLR448W_12_1028848_1029762_INTRON_16_399 intron 29.89352 118.441988 29.89352 89.548468 59.720994 1.776127028 -0.069111 152 67 SH3183 3183 Ser5 tRNA 36 52 41.975429 97.416268 69.6958485 1.84320691 0.092681 152 68 SH17784 17784 YKL180W_11_109271_110131_INTRON_310_615 intron/exon 27.852213 106.601592 27.852213 79.749379 53.800796 1.730788701 -0.043695 152 69 SH7099 7099 snR63 snR63 1 23 30.144983 78.626292 54.3856375 1.735484224 0.119555 152 70 SH5046 5046 snR10 3' 32.147721 86.249534 59.1986275 1.772311638 0.086258 152 71 SH6558 6558 snR46 3' 30.84374 87.279856 59.061798 1.771306664 0.012467 152 72 SH13627 13627 MT ATP6 ATP6 27.454451 96.764279 27.454451 70.309828 48.8821395 1.689150206 0.052312 152 73 SH2461 2461 Phe5 tRNA 76 90 130.999915 197.066043 164.032979 2.214931172 -0.01996 152 74 SH1148 1148 His1 5' flank 27.127043 81.532365 54.329704 1.735037339 -0.11554 152 75 SH11742 11742 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5596 5611 246.886183 313.425686 280.1559345 2.447399826 -0.015139 152 76 SH3123 3123 Ser4 tRNA 21 33 31.162497 88.677684 59.9200905 1.777572461 0.001649 152 77 SH9664 9664 RUF4 RUF4 96 108 38.350594 95.756526 67.05356 1.82642184 0.053819 152 78 SH5664 5664 snR34 snR34 241 257 31.668893 81.147331 56.408112 1.751341564 0.160505 152 79 SH4965 4965 snR9 3' 29.634651 79.82301 54.7288305 1.738216168 0.07226 152 80 SH3152 3152 Ser4 3' flank 32.339221 90.707174 61.5231975 1.789038899 0.016253 152 81 SH8878 8878 LSR1 / U2 RNA U2 1031 1043 30.360838 81.876162 56.1185 1.749106054 0.090216 152 82 SH21305 21305 YPL218W spliced 30.516369 84.255885 57.386127 1.758806915 0.052734 152 83 SH16382 16382 YER007C-A_5_166884_166236_INTRON_12_114 intron 27.893621 102.104566 27.893621 75.210945 51.552283 1.712247903 0.017768 152 84 SH17314 17314 YHR203C_8_505526_504472_INTRON_15_283 intron 29.764959 114.943964 29.764959 86.179005 57.971982 1.763218149 -0.015547 152 85 SH15607 15607 YBR119W_2_479296_480281_INTRON_9_97 intron 29.36886 100.364578 29.36886 71.995718 50.682289 1.704856221 0.158615 152 86 SH3984 3984 RNase MRP 336-340 + 3' 336 29.163747 72.252663 50.708205 1.705078237 0.141843 152 87 SH6811 6811 snR52 5' 28.863518 80.042781 54.4531495 1.736023004 0.019829 152 88 SH8955 8955 snR17a / U3a U3a 61 80 28.367035 88.373169 58.370102 1.766190452 -0.118824 152 89 SH16669 16669 YFR032C-A_6_223758_223245_INTRON_1_331 intron 37.110756 136.225039 37.110756 100.114283 68.6125195 1.836403367 -0.065014 152 90 SH8253 8253 snoRNA cluster4 5' 30.614415 125.063802 30.614415 95.449387 63.031901 1.799560405 -0.135939 152 91 SH1041 1041 Gly3 5' flank 28.603112 72.954058 50.778585 1.705680595 0.095597 152 92 SH947 947 Gly1 5' flank - tRNA2 2 30.717044 153.187569 91.9523065 1.963562627 -1.093994 152 93 SH9425 9425 RUF2 5' 30.486887 140.469297 85.478092 1.931854819 -0.924639 152 94 SH9039 9039 snR17a / U3a 481-490 + 3' 481 32.599336 99.174494 65.886915 1.818799173 -0.154938 152 95 SH10077 10077 RUF6 RUF6 231 247 29.276871 103.72276 66.4998155 1.82282044 -0.337873 152 96 SH15749 15749 YCR031C_3_178212_177492_INTRON_8_314 intron 28.327041 117.903669 28.327041 90.576628 59.4518345 1.77416526 -0.158811 152 97 SH13420 13420 MT COX1 intronic 28.416779 96.19374 28.416779 68.776961 48.59687 1.686608298 0.13981 152 98 SH19537 19537 CBP1 1.2 30.494049 93.089853 61.791951 1.790931908 -0.102489 152 99 SH18340 18340 YML124C_13_23684_22049_INTRON_26_323 intron 30.196261 109.807304 30.196261 80.611043 55.403652 1.743538393 0.097798 152 100 SH10730 10730 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 536 551 29.967885 81.50639 55.7371375 1.746144661 0.072434 152 101 SH15099 15099 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 27.691011 101.645072 27.691011 74.954061 51.322536 1.710308108 0.007456 152 102 SH18014 18014 YLR287C-A_12_713158_712537_INTRON_4_433 intron/exon 27.460336 96.973778 27.460336 70.513442 48.986889 1.69007986 0.049949 152 103 SH9083 9083 snR14 / U4 RNA U4 31 45 30.149057 91.92555 61.0373035 1.785595339 -0.098247 152 104 SH16894 16894 YGL226C-A_7_73156_72747_INTRON_22_170 exon/intron 28.392982 107.510904 28.392982 80.117922 54.255452 1.734443386 -0.012079 153 2 SH4212 4212 telomerase RNA telomerase 96 113 26.948019 69.94372 48.4458695 1.685256755 0.021466 153 3 SH6278 6278 snR42 snR42 171 188 37.216012 82.331252 59.773632 1.776509645 0.336235 153 4 SH4467 4467 telomerase RNA 3' 27.940448 77.645557 52.7930025 1.722576362 -0.010968 153 5 SH8693 8693 LSR1 / U2 RNA U2 106 122 38.331127 94.139061 66.235094 1.821088157 0.08854 153 6 SH13275 13275 MT COX1 Exon 5a 28.483213 106.08926 28.483213 78.606047 53.54463 1.728715922 0.012973 153 7 SH2864 2864 Pro7 3' flank 31.439876 91.948294 61.694085 1.790243527 -0.042519 153 8 SH14185 14185 MT COB Exon6 27.311547 96.180495 27.311547 69.868948 48.5902475 1.686549111 0.048297 153 9 SH4323 4323 telomerase RNA telomerase 651 669 26.718805 82.578791 54.648798 1.737580614 -0.156879 153 10 SH16644 16644 YFR031C-A_6_221405_220494_INTRON_5_151 5' exon 47.461637 167.669936 47.461637 121.208299 84.334968 1.926007684 -0.24111 153 11 SH11509 11509 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4431 4448 24948.96295 13118.09878 19033.53086 4.279519361 0.069072 153 12 SH11206 11206 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2916 2936 30.619884 99.32394 64.971912 1.812725647 -0.211538 153 13 SH6987 6987 snR60 snR60 16 32 50.201417 155.850282 103.0258495 2.012946204 -0.6724 153 14 SH6438 6438 snR45 snR45 36 54 24.264498 66.908014 45.586256 1.658833925 -0.134032 153 15 SH5424 5424 snR31 snR31 186 202 31.010411 83.835215 57.422813 1.759084464 0.081971 153 16 SH10848 10848 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1126 1146 31.727005 73.771927 52.749466 1.722218067 0.279735 153 17 SH5662 5662 snR34 snR34 231 246 30.160727 88.230666 59.1956965 1.772290135 -0.034266 153 18 SH4282 4282 telomerase RNA telomerase 446 461 35.081883 96.663379 65.872631 1.81870501 -0.040128 153 19 SH4431 4431 telomerase RNA telomerase 1191 1207 28.353038 83.386606 55.869822 1.747177288 -0.054768 153 20 SH14060 14060 MT COB Cytbi4 25.882422 98.167553 25.882422 73.285131 49.5837765 1.695339601 -0.101013 153 21 SH12293 12293 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.197286 103.768584 30.197286 74.571298 52.384292 1.719201079 0.175836 153 22 SH8117 8117 snoRNA cluster 3; 5'/snR41 30.60712 109.293034 30.60712 79.685914 55.146517 1.741518088 0.134818 153 23 SH6158 6158 snR39B 3' 26.533796 79.655372 53.094584 1.725050222 -0.133884 153 24 SH11656 11656 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5166 5179 10017.99117 6038.827004 8028.409086 3.904629494 0.105689 153 25 SH21737 21737 copy of SH12342 37.521085 92.461412 64.9912485 1.81285488 0.107574 153 26 SH15991 15991 YDL136W_4_217600_218367_INTRON_4_408 intron 30.661213 118.784953 30.661213 89.12374 59.8924765 1.777372271 -0.027818 153 27 SH11397 11397 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3871 3888 1411.812072 1001.841315 1206.826694 3.081644908 0.382072 153 28 SH14001 14001 MT COB intronic 27.502675 106.685036 27.502675 80.182361 53.842518 1.731125362 -0.072912 153 29 SH6685 6685 snR49 5' 32.663202 82.072589 57.3678955 1.758668918 0.184342 153 30 SH1870 1870 Leu9 91-101 + 3' flank 91 30.151524 84.391695 57.2716095 1.757939388 0.034144 153 31 SH17162 17162 YHR016C_8_138446_136872_INTRON_48_215 intron 32.320218 117.387852 32.320218 86.067634 59.193926 1.772277145 0.096687 153 32 SH4788 4788 snR5 snR5 111 132 27.604212 68.900307 48.2522595 1.683517655 0.082221 153 33 SH12036 12036 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7066 7089 28.872987 71.438039 50.155513 1.700318677 0.134055 153 34 SH1550 1550 Leu4 5' flank 37.341953 83.886948 60.6144505 1.782576172 0.30111 153 35 SH18902 18902 YOL120C_15_94401_93394_INTRON_113_559 intron 27.872473 103.99447 27.872473 77.121997 52.497235 1.72013643 -0.008784 153 36 SH15317 15317 YAL003W_1_142172_143158_INTRON_81_446 intron 27.350653 100.350078 27.350653 73.999425 50.675039 1.704794092 -0.004062 153 37 SH20853 20853 YLR061W spliced 37.729765 92.806783 65.268274 1.814702128 0.104744 153 38 SH4781 4781 snR5 snR5 76 90 37.12209 97.376987 67.2495385 1.827689308 -0.007581 153 39 SH7963 7963 snoRNA cluster 2 5' 31.060629 109.642223 31.060629 79.581594 55.3211115 1.742890897 0.163843 153 40 SH5999 5999 snR37 5' 32.161463 86.737525 59.449494 1.774148163 0.078102 153 41 SH3991 3991 RNase MRP 3' 27.770223 87.379847 57.575035 1.760234211 -0.140736 153 42 SH4075 4075 SRP RNA SRP RNA 266 280 6706.61645 8089.278918 7397.947684 3.869111256 -0.879739 153 43 SH19719 19719 Negative Control 36.67996 100.538567 68.6092635 1.836382757 -0.083343 153 44 SH5364 5364 snR30 3' 27.264391 85.044613 56.154502 1.74938458 -0.148251 153 45 SH407 407 Asn1 3' flank 29.30969 85.633733 57.4717115 1.759454131 -0.026358 153 46 SH4590 4590 U3b (snR17b) 3' 28.666969 73.873288 51.2701285 1.709864406 0.087262 153 47 SH15934 15934 YDL115C_4_255042_253994_INTRON_1_88 exon/intron 30.186992 111.64386 30.186992 82.456868 56.32193 1.750677528 0.071597 153 48 SH21591 21591 copy of SH6252 82.494785 166.065416 124.2801005 2.094401596 -0.263102 153 49 SH18451 18451 YMR143W_13_551927_552902_INTRON_25_568 5' exon 41.181698 137.305809 41.181698 97.124111 69.1529045 1.839810426 0.08317 153 50 SH21210 21210 YOR096W spliced 28.250261 79.279966 53.7651135 1.730500567 -0.011047 153 51 SH9903 9903 RUF5-1 RUF5-1 321 340 26.450838 75.02858 50.739709 1.705347972 -0.081739 153 52 SH10867 10867 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1221 1237 122.056876 142.730924 132.3939 2.121867976 0.44606 153 53 SH11472 11472 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4246 4264 1442.664122 1586.445204 1514.554663 3.180284952 -0.309078 153 54 SH19357 19357 YPL249C-A_16_76239_75699_INTRON_17_254 intron/exon 29.044629 100.357567 29.044629 72.312938 50.6787835 1.704826181 0.133297 153 55 SH765 765 Gln4 3' flank 27.078377 67.261498 47.1699375 1.673665301 0.068281 153 56 SH18060 18060 YLR333C_12_796335_795573_INTRON_1_423 3' exon 32.024847 133.015766 32.024847 101.990919 67.007883 1.826125897 -0.227 153 57 SH21769 21769 copy of SH13809 27.533365 70.726298 49.1298315 1.691345275 0.052172 153 58 SH6912 6912 snR58 5' 30.076277 79.329012 54.7026445 1.738008322 0.106347 153 59 SH1410 1410 Leu1 3' flank 27.978471 70.039545 49.009008 1.690275912 0.092419 153 60 SH15058 15058 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.408738 110.158584 30.408738 80.749846 55.579292 1.74491301 0.109287 153 61 SH14977 14977 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.60459 107.027227 27.60459 80.422637 54.0136135 1.732503232 -0.068938 153 62 SH20408 20408 YFR032C-A spliced 43.592296 115.338453 79.4653745 1.900177934 -0.218167 153 63 SH3307 3307 Thr2 3' flank 27.200035 72.479523 49.839779 1.697576108 0.005218 153 64 SH7994 7994 snoRNA cluster 2 intergenic 28.724036 116.767577 28.724036 89.043541 58.8837885 1.769995744 -0.113776 153 65 SH8190 8190 snoRNA cluster 3; snR70/intergenic 27.637024 97.152764 27.637024 70.51574 49.076382 1.690872538 0.06227 153 66 SH1221 1221 Ile1 66-74 + 3' flank 66 27.504677 71.694854 49.5997655 1.695479623 0.037113 153 67 SH8768 8768 LSR1 / U2 RNA U2 481 493 68.347257 122.793971 95.570614 1.980324376 0.085111 153 68 SH3513 3513 Tyr1 3' flank 27.740365 89.513261 58.626813 1.768096286 -0.168553 153 69 SH3216 3216 Thr1 5' flank 27.819279 72.39327 50.1062745 1.699892113 0.049713 153 70 SH10308 10308 RUF7 RUF7 151 163 88.238585 146.604345 117.421465 2.069747495 0.033304 153 71 SH16953 16953 YGR029W_7_543547_544199_INTRON_87_169 5' exon 30.018662 119.53415 30.018662 90.515488 60.267075 1.780080114 -0.080135 153 72 SH15163 15163 MT tRNA Val tRNA 27.290507 99.916207 27.290507 73.6257 50.4581035 1.702930923 -0.003443 153 73 SH10461 10461 RUF8 RUF8 231 245 31.143132 82.814228 56.97868 1.755712384 0.106643 153 74 SH20448 20448 YGL103W spliced 32.550582 93.299018 62.9248 1.798821844 -0.032202 153 75 SH4074 4074 SRP RNA SRP RNA 261 275 451.054652 658.649016 554.851834 2.744177026 -0.445025 153 76 SH13887 13887 MT COB intronic 26.836007 96.41303 26.836007 70.577023 48.706515 1.687587056 0.004795 153 77 SH3415 3415 Trp1 5' flank 29.54316 80.532381 55.0377705 1.740660833 0.057576 153 78 SH7156 7156 snR63 3' 26.57171 81.324402 53.948056 1.7319758 -0.151955 153 79 SH442 442 Asp1 tRNA 31 43 34.95873 89.179575 62.0691525 1.792875816 0.120502 153 80 SH13114 13114 MT COX1 COX1ai3 29.688103 98.714129 29.688103 70.026026 49.8570645 1.697726704 0.206759 153 81 SH21878 21878 copy of SH18253 27.884264 72.523982 50.204123 1.700739385 0.052475 153 82 SH19007 19007 YOR182C_15_678792_678190_INTRON_4_414 5' exon 30.4366 114.208097 30.4366 84.771497 57.6040485 1.760453007 0.039792 153 83 SH3724 3724 Val3 3' flank 27.826833 89.036147 58.43149 1.766646961 -0.15612 153 84 SH15811 15811 YDL061C_4_341182_340627_INTRON_1_408 intron 32.229592 118.722033 32.229592 87.492441 59.8610165 1.777144087 0.067529 153 85 SH14041 14041 MT COB Cytbi4 29.811145 106.563786 29.811145 77.752641 53.781893 1.730636084 0.10976 153 86 SH19745 19745 Negative Control 53.358417 107.213141 80.285779 1.904638626 0.107919 153 87 SH7403 7403 snR69 5' 27.228291 77.322273 52.275282 1.718296384 -0.055438 153 88 SH3079 3079 Ser3 91-101 + 3' flank 91 28.963764 65.838308 47.401036 1.675787834 0.218429 153 89 SH5266 5266 snR30 snR30 181 193 36.61886 90.814725 63.7167925 1.804253905 0.123261 153 90 SH17512 17512 YJL136C_10_156971_156248_INTRON_25_484 intron 26.412884 99.936468 26.412884 74.523584 50.468234 1.703018108 -0.078023 153 91 SH15951 15951 YDL130W_4_229906_230527_INTRON_115_415 5' exon 30.814837 168.025767 30.814837 138.21093 84.5128835 1.92692292 -0.882594 153 92 SH12637 12637 MT_15S MT_15S 39.462096 166.08426 39.462096 127.622164 83.54213 1.921905544 -0.508692 153 93 SH13780 13780 MT COB intronic 30.280592 133.082526 30.280592 103.801934 67.041263 1.826342187 -0.31061 153 94 SH13334 13334 MT COX1 COX1-ai5a 28.098143 101.502883 28.098143 74.40474 51.2514415 1.709706085 0.042323 153 95 SH11729 11729 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5531 5550 206.703834 168.301528 187.502681 2.273007482 0.792813 153 96 SH17760 17760 YKL157W_11_154993_158183_INTRON_282_664 intron 30.634844 103.513987 30.634844 73.879143 52.2569935 1.71814442 0.212278 153 97 SH3787 3787 RNaseP 5' flank 28.441422 72.405791 50.4236065 1.702633905 0.09214 153 98 SH18130 18130 YLR388W_12_898158_898821_INTRON_1_488 3' exon 34.841536 113.789438 34.841536 79.947902 57.394719 1.758871934 0.311327 153 99 SH21310 21310 YPL241C spliced 29.934563 89.155625 59.545094 1.774845985 -0.060473 153 100 SH18610 18610 YNL069C_14_494998_493953_INTRON_29_477 intron 29.689427 114.230281 29.689427 85.540854 57.6151405 1.760536625 -0.00745 153 101 SH1406 1406 Leu1 101-115 + 3' flank 101 31.903907 98.325205 65.114556 1.813678084 -0.155905 153 102 SH8256 8256 snoRNA cluster4 5' 29.683773 121.505685 29.683773 92.821912 61.2528425 1.787126247 -0.134075 153 103 SH662 662 Gln2 3' flank 29.262245 80.395864 54.8290545 1.739010757 0.041273 153 104 SH16327 16327 YDR471W_4_1401759_1402553_INTRON_32_415 intron 35.310685 124.399534 35.310685 90.088849 62.699767 1.797265927 0.108464 154 2 SH3658 3658 Val2 tRNA 31 46 60.909926 119.576951 90.2434385 1.955415635 0.020971 154 3 SH1300 1300 Ile2 3' flank 28.552969 76.372878 52.4629235 1.719852488 0.046438 154 4 SH6435 6435 snR45 snR45 21 42 38.453202 95.370823 66.9120125 1.825504092 0.064343 154 5 SH12076 12076 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7266 7289 29.888932 86.937942 58.413437 1.766512761 -0.023548 154 6 SH20651 20651 YIL004C spliced 32.777923 89.558227 61.168075 1.786524813 0.054007 154 7 SH16136 16136 YDR092W_4_629869_630598_INTRON_31_298 5' exon 27.15755 105.225367 27.15755 79.067817 53.1126835 1.725198245 -0.082691 154 8 SH9141 9141 snR7 U5 RNA 5' 27.2445 67.17536 47.20993 1.674033356 0.08129 154 9 SH14626 14626 MT 21S rRNA Sce1 endonuc 26.573362 100.362791 26.573362 74.789429 50.6813955 1.704848565 -0.069775 154 10 SH21356 21356 YPR187W spliced 211.355406 217.810577 214.5829915 2.331595295 0.39011 154 11 SH1608 1608 Leu5 5' flank 28.176748 88.77764 58.477194 1.766986525 -0.134897 154 12 SH9162 9162 snR7 U5 RNA U5 81 96 28.631079 77.473857 53.052468 1.724705592 0.037255 154 13 SH13474 13474 MT COX1 intronic 26.502909 111.429535 26.502909 85.926626 56.2147675 1.749850419 -0.211954 154 14 SH20918 20918 YLR344W spliced 33.738802 78.475855 56.1073285 1.749019591 0.29703 154 15 SH12470 12470 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 19145.27639 28316.36904 19145.27639 9172.092647 14158.68452 4.151022905 0.288966 154 16 SH21793 21793 copy of SH14653 28.626366 89.930221 59.2782935 1.772895693 -0.133663 154 17 SH10944 10944 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1606 1621 31.430479 82.210998 56.8207385 1.754506874 0.130245 154 18 SH13048 13048 MT COX1 COX1ai2 27.862082 96.951511 27.862082 70.089429 48.9757555 1.689981144 0.083708 154 19 SH16478 16478 YER102W_5_362729_363698_INTRON_1_360 intron 28.318808 114.948691 28.318808 87.629883 57.9743455 1.763235854 -0.108036 154 20 SH20223 20223 YDR092W spliced 30.559005 94.337361 62.448183 1.795519807 -0.120235 154 21 SH10777 10777 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 771 789 26.107243 82.88892 54.4980815 1.736381214 -0.20426 154 22 SH18678 18678 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.81953 121.255144 30.81953 91.435614 61.127572 1.786237146 -0.060542 154 23 SH12245 12245 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.728758 99.089325 28.728758 71.360567 50.0446625 1.699357765 0.125452 154 24 SH17475 17475 YJL001W_10_434855_435618_INTRON_66_181 intron 28.543854 102.564155 28.543854 75.020301 51.7820775 1.71417947 0.063727 154 25 SH15664 15664 YBR189W_2_604466_605466_INTRON_8_420 intron 27.253363 104.049453 27.253363 77.79609 52.5247265 1.7203638 -0.059821 154 26 SH7286 7286 snR66 5' 28.638787 96.504011 62.571399 1.796375865 -0.242222 154 27 SH1395 1395 Leu1 tRNA-intron 46 58 33.961255 87.204999 60.583127 1.782351686 0.141226 154 28 SH15039 15039 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.021836 119.911785 30.021836 90.889949 60.4558925 1.781438637 -0.08638 154 29 SH3310 3310 Thr2 3' flank 27.988787 77.772397 52.880592 1.723296308 -0.009345 154 30 SH9406 9406 RUF1 3' 30.250357 79.299949 54.775153 1.738583599 0.117588 154 31 SH5138 5138 snR11 3' 77.196526 120.346422 98.771474 1.994631535 0.248466 154 32 SH18293 18293 YML073C_13_124172_123227_INTRON_16_430 intron 32.343003 124.998732 32.343003 93.655729 62.999366 1.799336179 -0.04542 154 33 SH3173 3173 Ser5 5' flank - tRNA5 5 30.059005 93.834614 61.9468095 1.792018943 -0.134049 154 34 SH6418 6418 snR45 5' 27.876034 87.50181 57.688922 1.761092424 -0.134967 154 35 SH12565 12565 MT_15S MT_15S 27.922596 113.23979 27.922596 86.317194 57.119895 1.7567874 -0.118175 154 36 SH18812 18812 YNL302C_14_62942_61957_INTRON_21_571 intron 29.678721 109.968028 29.678721 81.289307 55.484014 1.744167873 0.056835 154 37 SH2484 2484 Pro1 5' flank 30.862986 86.369059 58.6160225 1.768016345 0.02953 154 38 SH8950 8950 snR17a / U3a U3a 36 53 30.357225 89.177571 59.767398 1.776464349 -0.042088 154 39 SH11678 11678 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5276 5291 366.113012 331.544397 348.8287045 2.542612215 0.392362 154 40 SH16841 16841 YGL178W_7_167356_170575_INTRON_4_643 intron 27.611933 106.778406 27.611933 80.166473 53.889203 1.731501761 -0.065243 154 41 SH3980 3980 RNase MRP RNaseMRP 316 332 30.397732 78.277327 54.3375295 1.735099889 0.13974 154 42 SH9742 9742 RUF4 RUF4 486 503 27.760271 74.732917 51.246594 1.709665006 0.015102 154 43 SH5625 5625 snR34 snR34 46 65 27.466898 75.804482 51.63569 1.712949985 -0.01915 154 44 SH825 825 Glu1 3' flank 29.597055 77.553581 53.575318 1.728964758 0.098746 154 45 SH9866 9866 RUF5-1 RUF5-1 136 157 29.110842 82.969626 56.040234 1.74849994 -0.000051 154 46 SH7600 7600 snR189 snR189 71 86 30.551638 86.951647 58.7516425 1.769020013 0.00556 154 47 SH21493 21493 copy of SH2041 30.023935 90.362384 60.1931595 1.77954714 -0.077281 154 48 SH21759 21759 copy of SH13391 25.722715 75.120518 50.4216165 1.702616765 -0.136669 154 49 SH14147 14147 MT COB intronic 26.012638 101.28342 26.012638 76.270782 51.14171 1.708775245 -0.129667 154 50 SH16118 16118 YDR064W_4_579453_580447_INTRON_22_560 intron 26.314119 99.525932 26.314119 74.211813 50.262966 1.701248113 -0.081215 154 51 SH11048 11048 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2126 2143 243.957437 288.876895 266.417166 2.425562204 0.102833 154 52 SH18121 18121 YLR388W_12_898158_898821_INTRON_1_488 intron 27.508409 114.955929 27.508409 88.44752 57.9779645 1.763262964 -0.170744 154 53 SH11401 11401 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3891 3904 42.216707 90.456983 66.336845 1.821754813 0.250277 154 54 SH20231 20231 YDR139C spliced 28.497053 94.829622 61.6633375 1.790027027 -0.221786 154 55 SH21744 21744 copy of SH12759 40.587587 102.491362 71.5394745 1.854545746 -0.039733 154 56 SH3870 3870 RNaseP RNaseP 316 332 27.262282 83.804165 55.5332235 1.744552883 -0.133686 154 57 SH14327 14327 MT VAR1 includes 5’ processing site VAR1 27.665586 99.963214 27.665586 73.297628 50.481607 1.703133172 0.027131 154 58 SH21436 21436 TH296 - bright yellow; WTP_218 27.804015 74.491386 51.1477005 1.708826113 0.02124 154 59 SH8275 8275 snoRNA cluster4 snR67 32.505755 124.228163 32.505755 92.722408 62.6140815 1.796672014 -0.020791 154 60 SH15481 15481 YBL092W_2_45639_46364_INTRON_1_333 5' exon 27.622295 105.532406 27.622295 78.910111 53.266203 1.72645174 -0.048721 154 61 SH3381 3381 Thr4 5' flank - tRNA8 8 29.418017 73.599512 51.5087645 1.711881133 0.139708 154 62 SH5793 5793 snR35 snR35 151 172 26.583584 73.908477 50.2460305 1.701101758 -0.057664 154 63 SH13759 13759 MT COB intronic 26.611491 98.69569 26.611491 73.084199 49.847845 1.697646388 -0.044882 154 64 SH14951 14951 MT tRNA Met tRNA 27.068678 108.731318 27.068678 82.66264 54.865659 1.7393006 -0.133382 154 65 SH18045 18045 YLR333C_12_796335_795573_INTRON_1_423 intron 36.782883 133.749422 36.782883 97.966539 67.374711 1.828496915 -0.027584 154 66 SH6235 6235 snR42 5' 32.163735 91.017612 61.5906735 1.789514953 0.003685 154 67 SH9169 9169 snR7 U5 RNA U5 116 132 31.006651 83.813698 57.4101745 1.758988867 0.082206 154 68 SH17527 17527 YJL136C_10_156971_156248_INTRON_25_484 intron/exon 27.517196 97.792217 27.517196 71.275021 49.3961085 1.693692736 0.043625 154 69 SH8682 8682 LSR1 / U2 RNA U2 51 68 34.752478 98.825933 66.7892055 1.824706277 -0.093121 154 70 SH12993 12993 MT COX1 COX1ai2 27.836777 105.772408 27.836777 78.935631 53.386204 1.727429042 -0.034471 154 71 SH3964 3964 RNase MRP RNaseMRP 236 253 27.792486 83.510801 55.6516435 1.745477994 -0.093883 154 72 SH1020 1020 Gly2 3' flank 31.802629 88.735985 60.269307 1.780096198 0.027847 154 73 SH18455 18455 YMR143W_13_551927_552902_INTRON_25_568 intron 30.609246 116.14437 30.609246 86.535124 58.572185 1.767691425 0.015509 154 74 SH11448 11448 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4126 4143 40.711607 92.124893 66.41825 1.822287429 0.182722 154 75 SH17084 17084 YHL001W_8_104270_105084_INTRON_130_527 intron 33.629727 127.808167 33.629727 95.17844 64.4040835 1.808913404 -0.044825 154 76 SH4873 4873 snR8 snR8 146 160 36.299043 87.877297 62.08817 1.79300886 0.182531 154 77 SH14858 14858 MT tRNA Ser2; tRNA Arg2 tRNA Ser 25.826947 94.187666 25.826947 69.360719 47.593833 1.677550682 -0.052333 154 78 SH7567 7567 snR189 5' 29.623579 76.164672 52.8941255 1.723407441 0.118527 154 79 SH4498 4498 U3b (snR17b) U3b 46 63 31.302357 90.969347 61.135852 1.786295969 -0.031828 154 80 SH19157 19157 YPL075W_16_412249_415357_INTRON_9_759 intron 32.008159 126.878192 32.008159 95.870033 63.939096 1.805766492 -0.101767 154 81 SH13197 13197 MT COX1 Exon4 30.191966 114.975386 30.191966 85.78342 57.987693 1.763335831 0.010635 154 82 SH16921 16921 YGL251C_7_31636_27921_INTRON_59_210 intron 27.829257 104.476528 27.829257 77.647271 52.738264 1.72212583 -0.018503 154 83 SH10413 10413 RUF8 5' - 11 -9 11 29.839894 83.692514 56.766204 1.754089854 0.033109 154 84 SH8403 8403 snoRNA cluster 5 snR190 32.032091 133.257011 32.032091 102.22492 67.1285055 1.826906978 -0.23146 154 85 SH1948 1948 Lys2 5' flank 29.89558 71.358657 50.6271185 1.70438321 0.201007 154 86 SH12864 12864 MT COX1 COX1ai1 27.741569 101.826139 27.741569 75.08457 51.4130695 1.711073533 0.009152 154 87 SH19661 19661 SIR1 2.2 30.032538 90.289119 60.1608285 1.779313808 -0.075643 154 88 SH17330 17330 YIL018W_9_316766_317930_INTRON_5_404 5' exon 29.614491 103.344639 29.614491 74.730148 52.1723195 1.717440145 0.136986 154 89 SH11062 11062 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2196 2214 180.929009 233.684487 207.306748 2.316613439 0.083014 154 90 SH9914 9914 RUF5-1 RUF5-1 376 398 27.031403 71.237078 49.1342405 1.691384247 0.009833 154 91 SH16785 16785 YGL103W_7_310965_311925_INTRON_50_560 intron 26.748656 108.345694 26.748656 82.597038 54.672847 1.73777169 -0.154996 154 92 SH21361 21361 Ile2_3 spliced 30.746099 131.798346 81.2722225 1.909942136 -0.786953 154 93 SH12276 12276 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.387991 152.445787 30.387991 123.057796 76.7228935 1.884924973 -0.655057 154 94 SH16882 16882 YGL189C_7_148970_148233_INTRON_1_368 intron 27.991581 92.566632 27.991581 65.575051 46.783316 1.670091001 0.156523 154 95 SH7939 7939 snoRNA cluster1 3' 30.184877 116.174715 30.184877 86.989838 58.5873575 1.76780391 -0.011284 154 96 SH18789 18789 YNL301C_14_64561_63569_INTRON_113_544 intron 30.477528 107.351773 30.477528 77.874245 54.1758865 1.733806027 0.149849 154 97 SH3243 3243 Thr1 71-73 + 3' flank 71 28.464125 77.678053 53.071089 1.724857999 0.0236 154 98 SH9143 9143 snR7 U5 RNA 5' - 4 -14 4 28.264975 68.413062 48.3390185 1.684297828 0.134586 154 99 SH5073 5073 snR11 5' 29.997409 73.35162 51.6745145 1.713276405 0.179834 154 100 SH1965 1965 Lys2 tRNA 26 45 39.557406 91.494983 65.5261945 1.816414947 0.173211 154 101 SH20520 20520 YGR034W spliced 29.724249 80.608591 55.16642 1.741674802 0.068143 154 102 SH1259 1259 Ile2 5' flank - tRNA7 7 29.746874 79.626542 54.686708 1.737881781 0.081849 154 103 SH14549 14549 MT 21S rRNA 21S rRNA3 29.370774 111.370062 29.370774 82.999288 56.185031 1.749620625 0.01634 154 104 SH10201 10201 RUF6 RUF6 851 873 30.925911 87.000695 58.963303 1.770581804 0.020984 155 2 SH14679 14679 MT 21S rRNA 21S rRNA4 27.332646 97.716031 27.332646 71.383385 49.3580155 1.69335769 0.029207 155 3 SH17832 17832 YKR094C_11_618384_617630_INTRON_9_376 intron 26.804019 107.933047 26.804019 82.129028 54.4665235 1.736129656 -0.145411 155 4 SH17068 17068 YGR214W_7_920570_921783_INTRON_91_545 intron/exon 28.382598 115.095155 28.382598 87.712557 58.0475775 1.7637841 -0.106483 155 5 SH11884 11884 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6306 6321 74.041342 103.090568 88.565955 1.94726681 0.495565 155 6 SH2610 2610 Pro3 tRNA 1 13 223.800491 301.619588 262.7100395 2.41947667 -0.075666 155 7 SH10331 10331 RUF7 RUF7 266 283 29.271059 85.487529 57.379294 1.7587552 -0.02548 155 8 SH1784 1784 Leu8 5' flank 29.20417 85.617001 57.4105855 1.758991976 -0.030883 155 9 SH15708 15708 YBR220C_2_663261_662457_INTRON_302_722 intron 30.798305 112.960785 30.798305 83.16248 56.9803925 1.755725436 0.085249 155 10 SH9094 9094 snR14 / U4 RNA U4 86 98 43.241427 100.772482 72.0069545 1.857374443 0.048562 155 11 SH827 827 Glu2 5' flank 28.67117 71.757933 50.2145515 1.700829588 0.116259 155 12 SH12071 12071 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7241 7259 26.974694 72.244781 49.6097375 1.695566929 -0.00769 155 13 SH5891 5891 snR36 5' 26.790253 70.532359 48.661306 1.687183761 0.002116 155 14 SH4579 4579 U3b (snR17b) 451-462 + 3' 451 28.134809 87.745911 57.94036 1.762981189 -0.120346 155 15 SH10139 10139 RUF6 RUF6 541 553 88.055583 153.899612 120.9775975 2.082704956 -0.055544 155 16 SH18798 18798 YNL301C_14_64561_63569_INTRON_113_544 intron 24.988788 99.342323 24.988788 75.353535 50.1711615 1.700454155 -0.195388 155 17 SH10709 10709 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 431 446 29.867368 81.636411 55.7518895 1.746259591 0.064508 155 18 SH14280 14280 MT VAR1 includes 5’ processing site VAR1 26.951324 93.603124 26.951324 67.6518 47.301562 1.674875482 0.053672 155 19 SH8939 8939 snR17a / U3a 5' 26.666495 63.89341 45.2799525 1.655905963 0.089256 155 20 SH13214 13214 MT COX1 COX1-ai4 30.146256 122.687917 30.146256 93.541661 61.8439585 1.79129728 -0.125332 155 21 SH20395 20395 YFL039C spliced 32.550162 85.994306 59.272234 1.772851296 0.107494 155 22 SH13450 13450 MT COX1 intronic 28.371856 103.478946 28.371856 76.10709 52.239473 1.717998787 0.037939 155 23 SH11376 11376 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3766 3782 23297.97279 12197.6299 17747.80135 4.249144559 0.094624 155 24 SH12040 12040 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7086 7103 32.480275 94.156599 63.318437 1.801530186 -0.052631 155 25 SH8824 8824 LSR1 / U2 RNA U2 761 782 27.949587 68.606812 48.2781995 1.683751065 0.110262 155 26 SH21852 21852 copy of SH17602 26.211564 72.132775 49.1721695 1.69171937 -0.061469 155 27 SH19482 19482 ADH1 29.214356 80.525836 54.870096 1.73933572 0.03657 155 28 SH7417 7417 snR69 5' - 7 -14 7 27.600009 69.456332 48.5281705 1.685993919 0.074215 155 29 SH1488 1488 Leu3 5' flank 27.920592 70.757786 49.339189 1.693192007 0.078641 155 30 SH13703 13703 MT tRNAGlu (and 5' processing site for COB) 5' / tRNA 27.839683 110.94032 27.839683 84.100637 55.97016 1.747956548 -0.097732 155 31 SH18489 18489 YMR194W_13_651144_651909_INTRON_17_479 intron 32.360789 129.890685 32.360789 98.529896 65.4453425 1.815878745 -0.147974 155 32 SH7113 7113 snR63 snR63 71 88 29.869215 82.64656 56.2578875 1.75018342 0.052312 155 33 SH7063 7063 snR62 3' 27.550707 75.695349 51.623028 1.712843475 -0.011967 155 34 SH10375 10375 RUF7 RUF7 486 500 32.453056 88.668375 60.5607155 1.782190998 0.056123 155 35 SH8823 8823 LSR1 / U2 RNA U2 756 777 27.825713 75.71662 51.7711665 1.714087951 0.006466 155 36 SH15240 15240 MT tRNA fMet 5' 27.340382 99.909133 27.340382 73.568751 50.4545665 1.702900479 0.000816 155 37 SH21608 21608 copy of SH6884 26.473468 67.690436 47.081952 1.67285446 0.018673 155 38 SH17752 17752 YKL157W_11_154993_158183_INTRON_282_664 intron 35.081257 123.026471 35.081257 88.945214 62.0132355 1.792484391 0.128836 155 39 SH20828 20828 YKR094C spliced 29.001 84.789118 56.895059 1.755074552 -0.028893 155 40 SH3242 3242 Thr1 66-73 + 3' flank 66 27.664052 78.008569 52.8363105 1.722932484 -0.03437 155 41 SH6319 6319 snR42 3' 27.982877 80.726161 54.354519 1.735235657 -0.047065 155 42 SH21087 21087 YMR292W spliced 32.385995 86.530407 59.458201 1.774211765 0.091112 155 43 SH20931 20931 YLR388W spliced 31.955371 89.574101 60.764736 1.783651615 0.019717 155 44 SH13179 13179 MT COX1 Exon4 27.066259 107.793316 27.066259 81.727057 54.396658 1.735572219 -0.122154 155 45 SH20501 20501 YGR001C spliced 28.859954 81.178611 55.0192825 1.740514923 0.005489 155 46 SH19263 19263 YPL143W_16_282121_282969_INTRON_20_544 intron 32.551746 120.0625 32.551746 88.510754 60.53125 1.781979642 0.06294 155 47 SH17852 17852 YKR095W-A_11_625432_625839_INTRON_39_113 5' exon 50.188018 156.632496 50.188018 107.444478 78.816248 1.896615757 0.048916 155 48 SH17032 17032 YGR183C_7_859471_859058_INTRON_4_216 intron 25.820386 97.512324 25.820386 72.691938 49.256162 1.692460569 -0.097836 155 49 SH15595 15595 YBR089C-A_2_426588_426148_INTRON_1_114 intron 28.296301 100.817551 28.296301 73.52125 50.9087755 1.706792651 0.067523 155 50 SH21204 21204 YOL127W spliced 35.252176 92.393414 63.822795 1.804975819 0.055754 155 51 SH2675 2675 Pro4 tRNA-intron 41 57 30.93636 99.547966 65.242163 1.814528351 -0.207324 155 52 SH7252 7252 snR65 snR65 36 53 28.664403 85.710908 57.1876555 1.757302292 -0.061715 155 53 SH3752 3752 Val4 5' flank - tRNA1 1 30.715307 76.948854 53.8320805 1.731041165 0.176461 155 54 SH17439 17439 YIL133C_9_99416_98527_INTRON_32_321 intron 26.29273 97.934857 26.29273 72.642127 49.4674285 1.694319335 -0.062267 155 55 SH10360 10360 RUF7 RUF7 411 428 31.2624 81.248315 56.2553575 1.750163889 0.14129 155 56 SH21368 21368 Leu1_5 spliced 29.466255 85.511843 57.489049 1.759585124 -0.017024 155 57 SH14804 14804 "MT tRNAs (Lys, Arg1, Gly)" intergenic 27.405466 103.408566 27.405466 77.0031 52.204283 1.717706135 -0.039076 155 58 SH467 467 Asp1 3' flank 27.382409 80.690595 54.036502 1.732687228 -0.087495 155 59 SH18870 18870 YNR053C_14_723108_721117_INTRON_811_1341 intron 28.370605 116.288846 28.370605 88.918241 58.644423 1.768226718 -0.128168 155 60 SH18440 18440 YMR142C_13_551206_550205_INTRON_5_406 intron 29.297045 122.475928 29.297045 94.178883 61.737964 1.790552303 -0.174079 155 61 SH1934 1934 Lys1 3' flank 26.597364 76.268846 51.433105 1.711242743 -0.086833 155 62 SH11934 11934 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6556 6571 35.056941 87.990245 61.523593 1.78904169 0.150163 155 63 SH5839 5839 snR35 snR35 381 393 46.52127 103.003222 74.762246 1.87368234 0.066815 155 64 SH16762 16762 YGL087C_7_346902_346404_INTRON_12_96 intron 28.92591 109.17839 28.92591 81.25248 55.089195 1.741066426 0.00888 155 65 SH15794 15794 YDL061C_4_341182_340627_INTRON_1_408 5' exon 27.215639 107.682392 27.215639 81.466753 54.341196 1.735129193 -0.10859 155 66 SH17198 17198 YHR021C_8_148660_147862_INTRON_4_553 intron 27.41055 102.459331 27.41055 76.048781 51.7296655 1.71373967 -0.026241 155 67 SH9800 9800 RUF4 776-788 + 3' 776 29.611124 77.728376 53.66975 1.729729572 0.097388 155 68 SH1258 1258 Ile2 5' flank - tRNA2 2 29.438543 85.409393 57.423968 1.759093199 -0.016429 155 69 SH5865 5865 snR35 snR35 511 528 34.33992 87.031863 60.6858915 1.783087736 0.15474 155 70 SH8157 8157 snoRNA cluster 3; intergenic/snR70 30.118128 102.258854 30.118128 73.140726 51.629427 1.712897305 0.190284 155 71 SH6657 6657 snR48 111-113 + 3' 111 27.842597 80.147507 53.995052 1.732353964 -0.049331 155 72 SH17266 17266 YHR123W_8_354817_356083_INTRON_51_141 5' exon 29.557645 105.29912 29.557645 76.741475 53.14956 1.725499674 0.106775 155 73 SH18321 18321 YML085C_13_99400_97941_INTRON_26_141 intron 30.808934 114.244486 30.808934 84.435552 57.622243 1.76059016 0.062209 155 74 SH5724 5724 snR34 541-550 + 3' 541 25.455208 76.379751 50.9174795 1.706866897 -0.172754 155 75 SH17924 17924 YLR078C_12_286560_285737_INTRON_4_92 intron 31.639223 109.294099 31.639223 78.654876 55.1470495 1.741522282 0.207511 155 76 SH15585 15585 YBR084C-A_2_415219_414144_INTRON_3_508 intron 25.222059 101.500371 25.222059 77.278312 51.2501855 1.709695442 -0.201697 155 77 SH2349 2349 Phe3 tRNA 71 87 36.390256 98.037982 67.214119 1.827460511 -0.037917 155 78 SH19884 19884 Negative Control 30.196471 87.639107 58.917789 1.770246441 -0.022273 155 79 SH8783 8783 LSR1 / U2 RNA U2 556 573 26.463258 73.642122 50.05269 1.699427423 -0.062936 155 80 SH21133 21133 YNL147W spliced 78.325641 123.111268 100.7184545 2.003109053 0.221619 155 81 SH19001 19001 YOR122C_15_552886_552297_INTRON_14_222 intron 27.720663 111.088969 27.720663 84.368306 56.0444845 1.748532879 -0.108986 155 82 SH816 816 Glu1 3' flank 27.560187 74.28774 50.9239635 1.706922198 0.006904 155 83 SH6635 6635 snR48 snR48 1 20 38.902384 88.342549 63.6224665 1.803610502 0.231011 155 84 SH16654 16654 YFR031C-A_6_221405_220494_INTRON_5_151 3' exon 29.514977 115.705545 29.514977 87.190568 58.3527725 1.766061495 -0.044888 155 85 SH21671 21671 copy of SH9621 29.760479 75.773578 52.7670285 1.722362638 0.132369 155 86 SH10917 10917 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1471 1487 97.245784 140.371011 118.8083975 2.074847138 0.217955 155 87 SH20144 20144 YDL108W spliced 138.626963 171.222203 154.924583 2.190120336 0.285661 155 88 SH15345 15345 YBL018C_2_186436_185960_INTRON_48_122 exon/intron 27.323269 106.655745 27.323269 80.332476 53.8278725 1.731007215 -0.087115 155 89 SH8655 8655 LSR1 / U2 RNA 5' 29.755949 70.166428 49.9611885 1.698632761 0.209055 155 90 SH13766 13766 MT COB intronic 29.780735 115.337725 29.780735 86.55699 58.1688625 1.764690571 -0.021608 155 91 SH3182 3182 Ser5 tRNA 31 47 31.748062 76.819776 54.283919 1.734671194 0.240452 155 92 SH3196 3196 Ser5 3' flank 31.067701 68.938229 50.002965 1.698995757 0.308018 155 93 SH4313 4313 telomerase RNA telomerase 601 620 26.002533 47.115621 36.559077 1.562995223 0.364303 155 94 SH5665 5665 snR34 snR34 246 263 29.901789 109.633601 69.767695 1.843654375 -0.432365 155 95 SH17639 17639 YJR145C_10_702761_701720_INTRON_15_270 5' exon 36.347383 124.013078 36.347383 88.665695 62.506539 1.795925453 0.165532 155 96 SH12655 12655 MT_15S MT_15S 27.898091 119.195922 27.898091 92.297831 60.097961 1.778859738 -0.208355 155 97 SH4314 4314 telomerase RNA telomerase 606 624 28.268709 87.274742 57.7717255 1.761715339 -0.106009 155 98 SH17433 17433 YIL133C_9_99416_98527_INTRON_32_321 intron 28.236712 108.443072 28.236712 81.20636 54.721536 1.738158279 -0.035988 155 99 SH14677 14677 MT 21S rRNA 21S rRNA4 27.915609 91.241854 27.915609 64.326245 46.120927 1.663898028 0.16974 155 100 SH17925 17925 YLR078C_12_286560_285737_INTRON_4_92 intron 27.660506 100.574257 27.660506 73.913751 50.7871285 1.705753659 0.018745 155 101 SH12941 12941 MT COX1 COX1ai2 29.823599 128.107588 29.823599 99.283989 64.553794 1.809921772 -0.233243 155 102 SH18672 18672 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.59879 116.23891 27.59879 89.64012 58.619455 1.768041776 -0.177973 155 103 SH17337 17337 YIL018W_9_316766_317930_INTRON_5_404 intron 29.28937 114.224645 29.28937 85.935275 57.6123225 1.760515383 -0.032724 155 104 SH242 242 Arg3 66-72 + 3' flank 66 3' flank 30.699461 91.313335 61.006398 1.785375384 -0.063696 156 2 SH10827 10827 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1021 1040 439.633025 389.403032 414.5180285 2.617543424 0.366409 156 3 SH17421 17421 YIL111W_9_155219_155762_INTRON_2_89 intron 26.81315 94.627391 26.81315 68.814241 47.8136955 1.679552311 0.027425 156 4 SH20963 20963 YML025C spliced 28.594388 72.342959 50.4686735 1.70302189 0.103303 156 5 SH2147 2147 Met1 3' flank 30.80839 75.762979 53.2856845 1.726610549 0.197712 156 6 SH7341 7341 snR68 5' 26.936388 70.687143 48.8117655 1.688524516 0.010489 156 7 SH20617 20617 YHR097C spliced 31.529685 97.82127 64.6754775 1.810739644 -0.155555 156 8 SH12853 12853 MT COX1 COX1ai1 38.010098 131.390321 38.010098 94.380223 66.1951605 1.82082624 0.076343 156 9 SH20744 20744 YJL205C-A spliced 26.978978 77.927715 52.4533465 1.719773201 -0.080579 156 10 SH14988 14988 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.022382 106.797633 29.022382 78.775251 53.8988165 1.731579229 0.046153 156 11 SH7881 7881 snoRNA cluster1 snR73 31.445349 129.858768 31.445349 99.413419 65.429384 1.815772832 -0.19063 156 12 SH17603 17603 YJL205C-A_10_50443_50139_INTRON_33_175 intron 27.263239 96.010895 27.263239 69.747656 48.5054475 1.685790516 0.046555 156 13 SH408 408 Asn1 3' flank 33.127819 113.228961 73.17839 1.86438285 -0.412333 156 14 SH20641 20641 YHR203C spliced 224.636678 297.494985 261.0658315 2.416750035 -0.048435 156 15 SH21392 21392 Pro2_7 spliced 50.975974 162.240639 106.6083065 2.027791045 -0.73325 156 16 SH17829 17829 YKR094C_11_618384_617630_INTRON_9_376 5' exon 47.264393 199.031678 47.264393 152.767285 100.015839 2.000068782 -0.694443 156 17 SH12619 12619 MT_15S MT_15S 38.404845 197.408534 38.404845 160.003689 99.204267 1.996530353 -0.981779 156 18 SH8140 8140 snoRNA cluster 3; intergenic 58.286041 171.63254 58.286041 114.346499 86.31627 1.936092665 0.06467 156 19 SH12920 12920 MT COX1 COX1ai2 24.924725 95.682436 24.924725 71.757711 48.341218 1.684317589 -0.153412 156 20 SH15428 15428 YBL072C_2_89435_88518_INTRON_1_308 intron 42.890107 147.066169 42.890107 105.176062 74.0330845 1.869425844 -0.045181 156 21 SH10596 10596 RUF8 RUF8 906 918 30.006201 86.516468 58.2613345 1.765380428 -0.010789 156 22 SH19829 19829 Negative Control 29.225318 91.527243 60.3762805 1.780866355 -0.133179 156 23 SH6686 6686 snR49 5' 27.985819 69.612562 48.7991905 1.688412618 0.098792 156 24 SH3037 3037 Ser2 3' flank 29.744544 111.833815 70.7891795 1.849966879 -0.477221 156 25 SH21178 21178 YNR053C spliced 47.605275 97.216801 72.411038 1.859804773 0.203827 156 26 SH2063 2063 Lys4 5' flank 30.290305 92.905332 61.5978185 1.789565332 -0.108392 156 27 SH20165 20165 YDL136W spliced 31.137839 94.110263 62.624051 1.796741158 -0.091392 156 28 SH4452 4452 telomerase RNA 1296-1301 + 3' 1296 29.572061 81.234115 55.403088 1.743533972 0.050732 156 29 SH5693 5693 snR34 snR34 386 405 29.948531 85.543024 57.7457775 1.761520233 0.00414 156 30 SH3948 3948 RNase MRP RNaseMRP 156 170 34.67893 91.805502 63.242216 1.801007079 0.054703 156 31 SH12771 12771 MT COX1 COX1ai1 27.451488 108.460994 27.451488 82.009506 54.730497 1.738229392 -0.098981 156 32 SH13489 13489 MT COX1 intronic 27.289557 106.51925 27.289557 80.229693 53.759625 1.730456231 -0.08816 156 33 SH4948 4948 snR9 snR9 146 160 34.235501 89.079262 61.6573815 1.789985077 0.104919 156 34 SH3135 3135 Ser4 tRNA 81 96 32.033032 84.931213 58.4821225 1.767023126 0.105303 156 35 SH7896 7896 snoRNA cluster1 intergenic 27.464191 100.380887 27.464191 73.916696 50.6904435 1.704926091 0.00499 156 36 SH10083 10083 RUF6 RUF6 261 282 29.41633 87.011911 58.2141205 1.765028341 -0.046196 156 37 SH16835 16835 YGL178W_7_167356_170575_INTRON_4_643 intron 37.863846 124.658091 37.863846 87.794245 62.8290455 1.798160462 0.220526 156 38 SH19056 19056 YOR234C_15_779404_778554_INTRON_20_546 intron 30.708712 110.131199 30.708712 80.422487 55.5655995 1.744806004 0.13185 156 39 SH8723 8723 LSR1 / U2 RNA U2 256 273 33.550122 91.706214 62.628168 1.796769708 0.028616 156 40 SH13319 13319 MT COX1 COX1-ai5a 26.216768 95.411999 26.216768 70.195231 48.2059995 1.683101092 -0.034959 156 41 SH3729 3729 Val3 3' flank 27.555685 82.267864 54.9117745 1.739665478 -0.094992 156 42 SH9259 9259 snR6 / U6 RNA 3' 29.522752 80.973993 55.2483725 1.742319489 0.050799 156 43 SH8023 8023 snoRNA cluster 2 snR55 26.854334 105.479396 26.854334 79.625062 53.239698 1.726235583 -0.110877 156 44 SH11332 11332 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3546 3566 33.522605 94.533211 64.027908 1.806369312 -0.033738 156 45 SH19232 19232 YPL090C_16_378390_377286_INTRON_7_400 intron 28.767551 107.438849 28.767551 79.671298 54.2194245 1.734154904 0.018212 156 46 SH20473 20473 YGL189C spliced 28.378592 89.097027 58.7378095 1.768917746 -0.130899 156 47 SH21615 21615 copy of SH7316 30.346632 78.560515 54.4535735 1.736026385 0.132955 156 48 SH2257 2257 Phe1 3' flank 27.069698 89.311895 58.1907965 1.764854302 -0.210772 156 49 SH21278 21278 YPL129W spliced 30.387523 90.583262 60.4853925 1.781650503 -0.064947 156 50 SH11261 11261 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3191 3204 39.403863 89.52925 64.4665565 1.809334473 0.214809 156 51 SH1491 1491 Leu3 5' flank 26.089758 78.165999 52.1278785 1.71707005 -0.147519 156 52 SH9324 9324 RUF1 RUF1 196 215 26.33206 65.90281 46.117435 1.663865144 0.034199 156 53 SH7931 7931 snoRNA cluster1 snR72 32.047499 117.862597 32.047499 86.815098 59.4312985 1.774015219 0.071968 156 54 SH19919 19919 YAL030W spliced 33.34476 87.346021 60.3453905 1.780644102 0.115647 156 55 SH5882 5882 snR35 3' 26.86226 77.859484 52.360872 1.719006871 -0.087871 156 56 SH21337 21337 YPR063C spliced 27.124955 77.981013 52.552984 1.720597381 -0.071096 156 57 SH16936 16936 YGR027C_7_534779_534126_INTRON_1_312 intron 46.057896 159.005419 46.057896 113.947523 80.0027095 1.903104696 -0.144856 156 58 SH21843 21843 copy of SH17173 26.950074 90.583437 58.7667555 1.769131714 -0.233271 156 59 SH19194 19194 YPL081W_16_404945_406039_INTRON_8_508 exon/intron 45.368844 169.265224 45.368844 124.89638 85.132612 1.930095958 -0.341102 156 60 SH8249 8249 snoRNA cluster4 5' 28.915788 99.263149 28.915788 71.347361 50.1315745 1.700111345 0.138126 156 61 SH3804 3804 RNaseP 5' flank 35.5331 104.914012 70.223556 1.846482818 -0.197346 156 62 SH11092 11092 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2346 2359 30.700533 75.305987 53.00326 1.724302582 0.197162 156 63 SH3024 3024 Ser2 81-82 + 3' flank 81 28.522472 81.368578 54.945525 1.739932327 -0.019014 156 64 SH7763 7763 snoRNA cluster1 snR76 31.295211 116.173324 31.295211 85.878113 58.586662 1.767798755 0.056963 156 65 SH19904 19904 snR17B spliced 29.522081 77.189286 53.3556835 1.727180688 0.098681 156 66 SH21515 21515 copy of SH3110 29.578755 85.096799 57.337777 1.758440851 -0.004397 156 67 SH9207 9207 snR6 / U6 RNA 5' 102.221737 139.813149 121.017443 2.082847972 0.280096 156 68 SH13704 13704 MT tRNAGlu (and 5' processing site for COB) 5' / tRNA 28.783293 114.995316 28.783293 87.212023 57.997658 1.763410457 -0.078867 156 69 SH6267 6267 snR42 snR42 116 137 29.181187 72.420059 50.800623 1.705869038 0.140653 156 70 SH17793 17793 YKL186C_11_93537_92746_INTRON_71_233 intron 27.582234 102.073662 27.582234 75.491428 51.536831 1.71211771 -0.007111 156 71 SH18928 18928 YOL121C_15_92849_92025_INTRON_21_410 intron 27.814067 120.748336 27.814067 93.934269 60.874168 1.784433039 -0.239579 156 72 SH21492 21492 copy of SH2040 32.051262 93.923601 62.9874315 1.799253899 -0.058964 156 73 SH19685 19685 Negative Control 28.959476 82.769208 55.864342 1.747134688 -0.007452 156 74 SH2681 2681 Pro4 tRNA 71 83 83.148341 154.503034 118.8256875 2.074910336 -0.125767 156 75 SH12162 12162 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7696 7711 505.246011 584.602999 544.924505 2.736336338 -0.108371 156 76 SH19883 19883 Negative Control 27.371048 91.774441 59.5727445 1.775047608 -0.225084 156 77 SH21893 21893 copy of SH18803 31.415344 83.917453 57.6663985 1.760922829 0.097818 156 78 SH10311 10311 RUF7 RUF7 166 185 27.226799 78.967082 53.0969405 1.725069497 -0.076616 156 79 SH4272 4272 telomerase RNA telomerase 396 413 28.014907 76.544029 52.279468 1.71833116 0.008352 156 80 SH19522 19522 ACT1 26.850522 84.400803 55.6256625 1.745275196 -0.169464 156 81 SH6808 6808 snR52 5' 29.771862 93.528873 61.6503675 1.78993567 -0.141847 156 82 SH6511 6511 snR46 snR46 46 63 29.673282 82.970322 56.321802 1.750676541 0.035997 156 83 SH12011 12011 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6941 6958 31.745616 85.596586 58.671101 1.768424238 0.081168 156 84 SH625 625 Gln2 5' flank 27.155171 76.242552 51.6988615 1.713480979 -0.046531 156 85 SH14113 14113 MT COB intronic 27.134107 97.812193 27.134107 71.678086 49.4060965 1.693780542 0.011214 156 86 SH16767 16767 YGL103W_7_310965_311925_INTRON_50_560 5' exon 159.121487 435.8916 159.121487 277.770113 218.4458 2.339343699 -0.361333 156 87 SH8000 8000 snoRNA cluster 2 intergenic 29.041902 119.960277 29.041902 91.918375 60.4801385 1.781612777 -0.148202 156 88 SH14432 14432 MT 21S rRNA 21S rRNA3 33.86245 131.162716 33.86245 98.300266 66.081358 1.820078959 -0.104466 156 89 SH3282 3282 Thr2 tRNA 11 25 107.271315 185.593504 146.4324095 2.165637209 -0.155312 156 90 SH21750 21750 copy of SH12971 27.235402 79.561228 53.398315 1.727527553 -0.083526 156 91 SH6116 6116 snR39B 5' 27.013347 71.53029 49.2718185 1.692598591 0.004605 156 92 SH16946 16946 YGR027C_7_534779_534126_INTRON_1_312 intron 28.626497 130.08397 28.626497 102.457473 65.541985 1.81651959 -0.335403 156 93 SH18240 18240 YML026C_13_223828_222987_INTRON_48_448 intron 30.068922 145.298003 30.068922 116.229081 73.1490015 1.864208402 -0.54623 156 94 SH16695 16695 YGL031C_7_438393_437938_INTRON_1_456 exon/intron 31.669393 126.473251 31.669393 95.803858 63.7366255 1.804389066 -0.109459 156 95 SH2374 2374 Phe4 5' flank 33.68249 93.132497 63.4074935 1.802140586 0.000642 156 96 SH16242 16242 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.610882 116.821673 29.610882 88.210791 58.9108365 1.77019519 -0.058542 156 97 SH14375 14375 MT ORF9 and ORF10 (hypothetical) ORF10 27.740762 103.462493 27.740762 76.721731 52.2312465 1.71793039 -0.012499 156 98 SH15713 15713 YBR220C_2_663261_662457_INTRON_302_722 intron 32.165972 127.191012 32.165972 96.02504 64.095506 1.80682758 -0.100844 156 99 SH6055 6055 snR37 snR37 191 208 29.716868 80.409877 55.0633725 1.740862807 0.070146 156 100 SH5042 5042 snR10 241-245 + 3' 241 27.306078 77.636839 52.4714585 1.719923136 -0.054128 156 101 SH13879 13879 MT COB intronic 27.262819 104.951647 27.262819 78.688828 52.9758235 1.724077716 -0.070591 156 102 SH6461 6461 snR45 151-172 + 3' 151 27.168921 66.395211 46.782066 1.670079397 0.087149 156 103 SH5428 5428 snR31 snR31 206 225 28.717961 77.872877 53.295419 1.726689881 0.037821 156 104 SH2320 2320 Phe3 5' flank 27.731586 80.530116 54.130851 1.733444855 -0.061627 157 2 SH916 916 Glu3 3' flank 31.541512 77.289233 54.4153725 1.735721606 0.222054 157 3 SH6101 6101 snR37 3' 33.302131 93.988724 63.6454275 1.803767208 -0.027649 157 4 SH18113 18113 YLR367W_12_855877_857316_INTRON_698_1180 intron 41.796366 134.565876 41.796366 93.76951 67.782938 1.831120389 0.16786 157 5 SH11876 11876 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6266 6281 3862.176138 2510.472611 3186.324375 3.503289986 0.254634 157 6 SH6982 6982 snR60 5' - 10 -9 10 29.329767 77.68575 53.5077585 1.728416758 0.079948 157 7 SH3771 3771 Val4 3' flank 29.697564 82.806528 56.252046 1.750138323 0.039516 157 8 SH17257 17257 YHR101C_8_315970_314876_INTRON_111_197 5' exon 27.68981 103.447554 27.68981 76.757744 52.223777 1.717868278 -0.016432 157 9 SH8735 8735 LSR1 / U2 RNA U2 316 337 29.920923 70.333768 50.1273455 1.700074707 0.217087 157 10 SH1413 1413 Leu1 3' flank 34.37394 87.868012 61.120976 1.786190281 0.13617 157 11 SH9366 9366 RUF1 RUF1 406 421 30.079562 106.793435 68.4364985 1.835287781 -0.373998 157 12 SH15174 15174 MT COX3 5' 27.667242 85.960283 27.667242 59.293041 43.4801415 1.638290949 0.234055 157 13 SH796 796 Glu1 5' flank - tRNA12 12 39.707498 134.585708 87.146603 1.940250463 -0.608998 157 14 SH13555 13555 MT COX1 Exon 6 25.227928 85.72845 25.227928 61.500522 43.364225 1.637131589 0.024389 157 15 SH21550 21550 copy of SH4563 39.491985 96.352818 67.9224015 1.832013033 0.065144 157 16 SH6581 6581 snR47 snR47 11 30 23.541647 65.22285 44.3822485 1.647209301 -0.164639 157 17 SH4331 4331 telomerase RNA telomerase 691 705 42.29075 92.874283 67.5825165 1.829834359 0.197322 157 18 SH630 630 Gln2 5' flank 25.844624 66.622848 46.233736 1.664958989 -0.011769 157 19 SH341 341 Arg5 tRNA 41 57 39.948303 91.417325 65.682814 1.817451751 0.183053 157 20 SH15067 15067 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.533857 107.697143 27.533857 81.163286 54.3485715 1.735188134 -0.082951 157 21 SH5813 5813 snR35 snR35 251 268 27.904177 69.579479 48.741828 1.687901813 0.093622 157 22 SH815 815 Glu1 3' flank 30.315364 84.788714 57.552039 1.760060715 0.034136 157 23 SH3629 3629 Val1 3' flank 30.169748 80.175537 55.1726425 1.741723785 0.101566 157 24 SH3231 3231 Thr1 tRNA 11 25 59.805618 125.478709 92.6421635 1.966808689 -0.08837 157 25 SH170 170 Arg2 5' flank 29.936439 76.955328 53.4458835 1.727914261 0.127982 157 26 SH17978 17978 YLR211C_12_564531_563792_INTRON_19_77 intron 28.14346 97.239467 28.14346 70.096007 49.1197335 1.691256002 0.102969 157 27 SH13413 13413 MT COX1 intronic 33.164562 136.271621 33.164562 104.107059 68.6358105 1.836550767 -0.238812 157 28 SH7614 7614 snR189 snR189 141 162 29.1504 71.940237 50.5453185 1.703680937 0.145319 157 29 SH2917 2917 Pro8 3' flank 29.508157 72.424231 50.966194 1.707282203 0.161589 157 30 SH19045 19045 YOR234C_15_779404_778554_INTRON_20_546 intron 29.548435 100.420075 29.548435 71.87164 50.7100375 1.705093932 0.171828 157 31 SH932 932 Gly1 5' flank 27.079107 67.828917 47.454012 1.676272936 0.060272 157 32 SH10441 10441 RUF8 RUF8 131 147 31.520052 88.527844 60.023948 1.778324557 0.019534 157 33 SH11137 11137 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2571 2588 12251.18202 8546.76512 10398.97357 4.016990474 -0.181593 157 34 SH19609 19609 RNA14 1.1 29.186016 80.9509 55.068458 1.740902916 0.02947 157 35 SH4178 4178 telomerase RNA 5' 29.23951 84.168132 56.703821 1.753612325 -0.006101 157 36 SH20064 20064 YBR230C spliced 29.104068 88.818229 58.9611485 1.770565935 -0.092265 157 37 SH20372 20372 YER179W spliced 31.072171 93.076536 62.0743535 1.792912205 -0.077131 157 38 SH12066 12066 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7216 7236 28.644039 75.044985 51.844512 1.714702791 0.069999 157 39 SH5388 5388 snR31 snR31 6 24 28.861682 83.580509 56.2210955 1.749899304 -0.023592 157 40 SH20400 20400 YFR024C-A spliced 31.539466 90.119276 60.829371 1.784113326 -0.007204 157 41 SH6005 6005 snR37 5' 31.641841 74.028113 52.834977 1.722921523 0.2712 157 42 SH18781 18781 YNL265C_14_145280_144279_INTRON_28_132 3' exon 31.362332 122.910794 31.362332 92.548462 61.955397 1.792079144 -0.055889 157 43 SH14972 14972 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 40.225781 140.438444 40.225781 101.212663 70.719222 1.849537474 -0.021205 157 44 SH6723 6723 snR49 snR49 141 158 30.939764 77.706663 54.3232135 1.734985453 0.180368 157 45 SH2383 2383 Phe4 5' flank 28.709196 76.232041 52.4706185 1.719916183 0.058567 157 46 SH5169 5169 snR13 snR13 1 20 26.424601 74.589245 50.506923 1.703350911 -0.078014 157 47 SH8750 8750 LSR1 / U2 RNA U2 391 406 28.573434 72.029279 50.3013565 1.701579697 0.106061 157 48 SH5520 5520 snR32 3' 31.803376 81.660482 56.731929 1.753827551 0.156425 157 49 SH1090 1090 Gly4 5' flank 111.068688 183.008955 147.0388215 2.167432013 -0.09053 157 50 SH9740 9740 RUF4 RUF4 476 493 25.488834 70.283415 47.8861245 1.68020969 -0.090392 157 51 SH2297 2297 Phe2 81-92 + 3' flank 81 25.383105 73.120236 49.2516705 1.692420965 -0.136367 157 52 SH11861 11861 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6191 6206 55.251646 106.487022 80.869334 1.907783866 0.152598 157 53 SH7402 7402 snR69 5' 26.102389 76.912502 51.5074455 1.711870012 -0.131074 157 54 SH6601 6601 snR47 3' 33.407936 90.174328 61.791132 1.790926151 0.059193 157 55 SH3137 3137 Ser4 91-101 + 3' flank 91 1200.245556 1691.859388 1446.052472 3.160184052 -0.65244 157 56 SH14272 14272 MT VAR1 includes 5’ processing site VAR1 27.260853 111.733655 27.260853 85.472802 56.3668275 1.751023592 -0.153524 157 57 SH1743 1743 Leu7 tRNA 11 25 4681.74732 10906.63979 7794.193557 3.891771187 -1.820912 157 58 SH8690 8690 LSR1 / U2 RNA U2 91 112 27.055588 74.974089 51.0148385 1.707696516 -0.037507 157 59 SH6796 6796 snR50 3' 29.225452 75.886189 52.5558205 1.720620821 0.0967 157 60 SH8492 8492 snR19 / U1 RNA 5' 28.027901 88.047626 58.0377635 1.763710668 -0.130956 157 61 SH15675 15675 YBR191W_2_606228_607098_INTRON_12_399 intron 29.206248 117.625975 29.206248 89.419727 59.3129875 1.773149799 -0.098015 157 62 SH17628 17628 YJR094W-A_10_608000_608553_INTRON_3_277 intron 29.218385 103.982438 29.218385 75.764053 52.491219 1.720086658 0.097858 157 63 SH21008 21008 YML124C spliced 29.251088 71.159057 50.2050725 1.700747599 0.162748 157 64 SH10606 10606 RUF8 3' 29.41435 80.202574 54.808462 1.738847615 0.053452 157 65 SH18042 18042 YLR333C_12_796335_795573_INTRON_1_423 intron 29.579295 114.740205 29.579295 86.16091 57.8701025 1.762454252 -0.023597 157 66 SH16373 16373 YER003C_5_159117_157735_INTRON_32_124 intron 29.31469 101.192328 29.31469 72.877638 51.096164 1.708388297 0.142947 157 67 SH4139 4139 SRP RNA SRP RNA 586 602 75.944606 122.433218 99.188912 1.996463127 0.199736 157 68 SH9790 9790 RUF4 RUF4 726 745 39.658632 99.963484 69.811058 1.84392422 -0.007272 157 69 SH21807 21807 copy of SH15282 33.317514 89.654868 61.486191 1.78877759 0.068608 157 70 SH7123 7123 snR63 snR63 121 138 27.302752 77.596084 52.449418 1.719740673 -0.053832 157 71 SH17103 17103 YHL001W_8_104270_105084_INTRON_130_527 intron/exon 27.691023 101.551136 27.691023 74.860113 51.275568 1.70991048 0.00866 157 72 SH21522 21522 copy of SH3383 34.553079 86.795596 60.6743375 1.783005043 0.165549 157 73 SH21275 21275 YPL090C spliced 29.318659 82.728028 56.0233435 1.748369024 0.016272 157 74 SH6335 6335 snR43 5' 30.949992 77.724849 54.3374205 1.735099018 0.180756 157 75 SH17020 17020 YGR148C_7_788173_787307_INTRON_1_392 intron 36.960922 117.044326 36.960922 81.083404 59.022163 1.771015121 0.36137 157 76 SH10198 10198 RUF6 RUF6 836 853 26.323456 86.920048 56.621752 1.752983303 -0.236265 157 77 SH21095 21095 YNL044W spliced 28.998381 84.105974 56.5521775 1.752449332 -0.020964 157 78 SH21526 21526 copy of SH3561 53.828734 135.388989 94.6088615 1.975931816 -0.336773 157 79 SH18318 18318 YML085C_13_99400_97941_INTRON_26_141 intron 35.003539 127.404742 35.003539 93.401203 64.202371 1.807551067 0.027674 157 80 SH13422 13422 MT COX1 intronic 30.789958 101.709799 30.789958 71.919841 51.3548995 1.710581884 0.248705 157 81 SH21234 21234 YOR293W spliced 29.340236 90.60786 59.974048 1.777963363 -0.112309 157 82 SH5342 5342 snR30 snR30 561 575 29.483943 89.957616 59.7207795 1.776125468 -0.094627 157 83 SH3785 3785 Val4 3' flank 34.080863 77.747015 55.913939 1.747520088 0.324966 157 84 SH3544 3544 Tyr2 5' flank - tRNA7 7 29.449447 87.781432 58.6154395 1.768012026 -0.058311 157 85 SH9040 9040 snR17a / U3a 486-490 + 3' 486 29.1803 74.724208 51.952254 1.715604395 0.109237 157 86 SH15986 15986 YDL136W_4_217600_218367_INTRON_4_408 intron 40.252264 131.858266 40.252264 92.606002 66.429133 1.822358584 0.162643 157 87 SH19107 19107 YOR312C_15_901173_900242_INTRON_2_427 intron 26.07013 87.979531 26.07013 62.909401 44.4897655 1.648260117 0.062752 157 88 SH11542 11542 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4596 4613 276.07426 281.346875 278.7105675 2.445153436 0.301139 157 89 SH8125 8125 snoRNA cluster 3; snR41 30.897237 103.693198 30.897237 73.795961 52.346599 1.71888847 0.229476 157 90 SH9689 9689 RUF4 RUF4 221 237 28.8559 80.99337 54.924635 1.73976718 0.007512 157 91 SH6933 6933 snR58 snR58 26 43 28.658865 69.863739 49.261302 1.692505886 0.141103 157 92 SH8306 8306 snoRNA cluster4 intergenic 27.985521 104.469871 27.985521 77.48435 52.7349355 1.722098419 -0.00585 157 93 SH8059 8059 snoRNA cluster 2 intergenic 35.973462 160.113869 35.973462 125.140407 80.5569345 1.906102931 -0.548429 157 94 SH2805 2805 Pro6 3' flank 26.953123 59.207256 43.0801895 1.634277605 0.186648 157 95 SH14086 14086 MT COB Cytbi4 29.004493 111.855195 29.004493 83.850702 56.4275975 1.75149156 -0.017523 157 96 SH189 189 Arg2 61-73 61 73 7155.570619 6348.432489 6752.001554 3.829432534 -0.411756 157 97 SH1785 1785 Leu8 5' flank 31.42939 85.325181 58.3772855 1.766243897 0.072681 157 98 SH18098 18098 YLR367W_12_855877_857316_INTRON_698_1180 intron 33.616732 111.174408 33.616732 78.557676 56.087204 1.748863791 0.290567 157 99 SH3554 3554 Tyr2 tRNA-intron/exon 41 59 26.828269 63.880792 45.3545305 1.656620676 0.100762 157 100 SH18480 18480 YMR143W_13_551927_552902_INTRON_25_568 3' exon 34.841274 123.300555 34.841274 89.459281 62.1502775 1.793443072 0.111266 157 101 SH9871 9871 RUF5-1 RUF5-1 161 173 36.857723 81.793599 59.325661 1.773242586 0.341271 157 102 SH5768 5768 snR35 snR35 26 40 28.476621 77.041659 52.75914 1.722297708 0.032664 157 103 SH2193 2193 Met2 3' flank 30.128255 113.038432 71.5833435 1.854811979 -0.488021 157 104 SH4860 4860 snR8 snR8 81 93 51.193114 122.633291 86.9132025 1.939085753 -0.193943 158 2 SH19561 19561 CBP1 2.2 30.820615 91.493493 61.157054 1.786446557 -0.061474 158 3 SH2034 2034 Lys3 3' flank 27.157785 82.494475 54.82613 1.738987592 -0.125151 158 4 SH14469 14469 MT 21S rRNA 21S rRNA3 26.898531 100.623839 26.898531 74.725308 50.8119195 1.705965601 -0.045529 158 5 SH2135 2135 Met1 tRNA 61 73 66.241915 135.585323 100.913619 2.003949781 -0.130687 158 6 SH17988 17988 YLR275W_12_694378_694800_INTRON_6_95 intron 29.580976 100.353955 29.580976 71.772979 50.6769775 1.704810705 0.175277 158 7 SH9365 9365 RUF1 RUF1 401 418 32.244301 85.205918 58.7251095 1.768823835 0.109106 158 8 SH1437 1437 Leu2 5' flank 28.118709 76.560685 52.339697 1.718831204 0.015102 158 9 SH10549 10549 RUF8 RUF8 671 692 26.067674 87.0362 56.551937 1.752447485 -0.256 158 10 SH6059 6059 snR37 snR37 211 228 28.399327 89.732587 59.065957 1.771337245 -0.140917 158 11 SH6276 6276 snR42 snR42 161 182 26.298504 69.569623 47.9340635 1.680644247 -0.020374 158 12 SH2017 2017 Lys3 tRNA-exon/intron 31 47 28.267899 73.619031 50.943465 1.707088481 0.064301 158 13 SH277 277 Arg4 5' flank 29.479936 96.055506 62.767721 1.79773636 -0.196271 158 14 SH8478 8478 snoRNA cluster 5 3' 25.782413 120.244432 25.782413 95.462019 60.622216 1.782631808 -0.369248 158 15 SH9385 9385 RUF1 RUF1 501 517 46.723188 114.038543 80.3808655 1.905152678 -0.133638 158 16 SH19700 19700 Negative Control 24.412724 78.412164 51.412444 1.711068249 -0.278483 158 17 SH7238 7238 snR65 5' 31.317151 85.723763 58.520457 1.767307709 0.060683 158 18 SH17684 17684 YKL006W_11_431544_432358_INTRON_130_527 intron 26.478475 113.359676 26.478475 87.881201 57.179838 1.757242921 -0.236212 158 19 SH8794 8794 LSR1 / U2 RNA U2 611 630 25.254077 68.092186 46.6731315 1.669066941 -0.077143 158 20 SH6923 6923 snR58 5' 27.887559 83.735158 55.8113585 1.746722594 -0.090134 158 21 SH8367 8367 snoRNA cluster 5 5' 30.393959 125.641433 30.393959 96.247474 63.3207165 1.80154582 -0.158493 158 22 SH1664 1664 Leu5 3' flank 28.25509 77.476668 52.865879 1.723175458 0.012311 158 23 SH4878 4878 snR8 snR8 171 183 34.972037 89.614376 62.2932065 1.794440686 0.110951 158 24 SH19777 19777 Negative Control 28.204523 80.768739 54.486631 1.736289956 -0.032727 158 25 SH19025 19025 YOR182C_15_678792_678190_INTRON_4_414 intron 30.622503 119.196522 30.622503 89.574019 60.098261 1.778861905 -0.037305 158 26 SH14004 14004 MT COB intronic 26.284101 104.138288 26.284101 78.854187 52.569144 1.720730905 -0.141638 158 27 SH11854 11854 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6156 6176 33.093622 80.879472 56.986547 1.755772342 0.224518 158 28 SH19600 19600 AEP2/ATP13 2.1 28.707469 76.088607 52.398038 1.719315026 0.060339 158 29 SH10915 10915 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1461 1474 28.926781 83.250221 56.088501 1.748873833 -0.015382 158 30 SH6106 6106 snR37 3' 26.742604 91.277236 59.00992 1.770925026 -0.255471 158 31 SH4136 4136 SRP RNA SRP RNA 571 583 38.213551 95.037741 66.625646 1.823641433 0.066415 158 32 SH21027 21027 YMR116C spliced 33.503097 91.778997 62.641047 1.796859008 0.025806 158 33 SH9802 9802 RUF4 786-788 + 3' 786 28.828145 88.228503 58.528324 1.767366088 -0.094709 158 34 SH3431 3431 Trp1 5' flank - tRNA4 4 28.625208 80.835676 54.730442 1.738228955 -0.005661 158 35 SH1921 1921 Lys1 61-72 + 3' flank 61 73 32.994408 85.300668 59.147538 1.771936672 0.138166 158 36 SH1503 1503 Leu3 5' flank - tRNA5 5 28.544499 91.199707 59.872103 1.777224513 -0.159181 158 37 SH14435 14435 MT 21S rRNA 21S rRNA3 26.396952 98.792872 26.396952 73.39592 49.896436 1.698069526 -0.064554 158 38 SH10970 10970 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1736 1754 205.846099 311.573012 258.7095555 2.41281247 -0.233032 158 39 SH6778 6778 snR50 snR50 66 80 33.34373 88.382017 60.8628735 1.784352453 0.097365 158 40 SH17892 17892 YLR048W_12_242233_243350_INTRON_91_449 intron 31.218633 118.731526 31.218633 88.512893 59.865763 1.777178522 0.006935 158 41 SH19667 19667 SIR1 2.4 29.057986 89.639501 59.3487435 1.773411529 -0.108624 158 42 SH1531 1531 Leu3 3' flank 28.990405 68.035078 48.5127415 1.685855818 0.188705 158 43 SH13066 13066 MT COX1 intronic 26.515828 99.120318 26.515828 73.60449 50.060159 1.699492225 -0.058624 158 44 SH727 727 Gln4 5' flank 26.276388 85.011775 55.6440815 1.745418978 -0.217411 158 45 SH8300 8300 snoRNA cluster4 intergenic 35.208577 119.818937 35.208577 85.61036 60.4094685 1.781105015 0.209533 158 46 SH10785 10785 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 811 826 2929.483495 3760.266804 3344.87515 3.524379912 -0.744961 158 47 SH1951 1951 Lys2 5' flank 28.420588 76.793867 52.6072275 1.721045414 0.032178 158 48 SH16801 16801 YGL137W_7_249872_252741_INTRON_19_218 intron 28.379292 114.927638 28.379292 87.548346 57.963819 1.763156992 -0.10374 158 49 SH14718 14718 MT tRNA cys; tRNA his 5' / tRNA cys 32.532155 124.960988 32.532155 93.428833 62.980494 1.799206063 -0.03551 158 50 SH12950 12950 MT COX1 COX1ai2 29.540943 123.854868 29.540943 95.313925 62.427434 1.795375484 -0.181515 158 51 SH3496 3496 Tyr1 tRNA 21 36 53.325206 123.041213 88.1832095 1.945385901 -0.161655 158 52 SH20424 20424 YGL031C spliced 73.906266 136.756868 105.331567 2.022558545 -0.032722 158 53 SH15468 15468 YBL087C_2_60732_59815_INTRON_43_546 intron 32.242398 118.867716 32.242398 87.625318 59.933858 1.777672235 0.065713 158 54 SH16742 16742 YGL076C_7_365994_364333_INTRON_565_1032 intron 26.354134 96.775231 26.354134 71.421097 48.8876155 1.689198855 -0.041508 158 55 SH228 228 Arg3 5' flank - tRNA 12 5' flank 12 31.595038 90.240225 60.9176315 1.784743009 -0.006922 158 56 SH5338 5338 snR30 snR30 541 560 29.56323 86.229232 57.896231 1.762650292 -0.025551 158 57 SH12004 12004 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6906 6928 27.204155 77.378026 52.2910905 1.718427699 -0.057831 158 58 SH6930 6930 snR58 snR58 11 31 29.492096 76.189068 52.840582 1.722967592 0.109825 158 59 SH10313 10313 RUF7 RUF7 176 197 27.175185 73.923723 50.549454 1.703716469 -0.015474 158 60 SH8594 8594 snR19 / U1 RNA U1 466 482 30.829844 78.466472 54.648158 1.737575528 0.16392 158 61 SH11675 11675 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5261 5276 263.670876 259.003474 261.337175 2.417201192 0.378318 158 62 SH1290 1290 Ile2 3' flank 27.580874 76.27186 51.926367 1.715387938 -0.017502 158 63 SH1576 1576 Leu4 tRNA-intron 51 65 27.442131 82.670284 55.0562075 1.740806292 -0.107658 158 64 SH11582 11582 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4796 4809 70.020881 115.362406 92.6916435 1.967040583 0.22728 158 65 SH21332 21332 YPR043W spliced 56.157675 114.073791 85.115733 1.930009844 0.033997 158 66 SH12783 12783 MT COX1 COX1ai1 29.286314 114.654904 29.286314 86.36859 57.827452 1.762134057 -0.040645 158 67 SH18384 18384 YMR116C_13_500687_499455_INTRON_538_810 intron 30.898632 115.428477 30.898632 85.529845 58.2142385 1.765029221 0.04618 158 68 SH19732 19732 Negative Control 30.508703 81.812351 56.160527 1.749431174 0.097925 158 69 SH11563 11563 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4701 4718 6855.05536 5074.007358 5964.531359 3.775576326 -0.112873 158 70 SH15783 15783 YDL029W_4_399336_400634_INTRON_23_145 5' exon 31.827911 120.18804 31.827911 89.360129 60.59402 1.782429766 0.018068 158 71 SH2237 2237 Phe1 tRNA 61 73 66.294965 137.028835 101.6619 2.007158222 -0.149408 158 72 SH17144 17144 YHR010W_8_126513_127484_INTRON_32_592 intron/exon 27.535192 104.56258 27.535192 78.027388 52.78129 1.72248 -0.043408 158 73 SH9654 9654 RUF4 RUF4 46 60 29.60852 95.933826 62.771173 1.797760244 -0.188485 158 74 SH10452 10452 RUF8 RUF8 186 205 26.793948 94.391352 60.59265 1.782419947 -0.2971 158 75 SH9684 9684 RUF4 RUF4 196 213 30.547968 86.016305 58.2821365 1.765535464 0.02213 158 76 SH15836 15836 YDL075W_4_322225_322987_INTRON_58_478 intron 31.982206 126.039872 31.982206 95.057666 63.519936 1.802910052 -0.08518 158 77 SH20246 20246 YDR367W spliced 27.094719 66.425955 46.760337 1.669877632 0.081438 158 78 SH2195 2195 Met2 3' flank 26.880921 84.825923 55.853422 1.747049786 -0.172362 158 79 SH15274 15274 MT 9S rRNA 9S 25.102145 89.620913 25.102145 65.518768 45.3104565 1.656198438 -0.049272 158 80 SH12489 12489 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 30.247947 103.471148 30.247947 74.223201 52.235574 1.717966371 0.183679 158 81 SH7654 7654 snoRNA cluster1 5' 26.52104 103.429842 26.52104 77.908802 52.214921 1.717794625 -0.112781 158 82 SH12180 12180 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7786 7804 26.854366 83.396555 55.1254605 1.74135223 -0.157209 158 83 SH9457 9457 RUF2 RUF2 126 143 29.3019 86.721237 58.0115685 1.763514608 -0.046236 158 84 SH5205 5205 snR13 3' 27.07118 95.557873 61.3145265 1.787563379 -0.302323 158 85 SH9976 9976 RUF5-1 RUF5-1 686 703 29.046325 94.197421 61.621873 1.789734895 -0.185886 158 86 SH3672 3672 Val2 3' flank 31.822452 77.432346 54.627399 1.737410523 0.23691 158 87 SH15014 15014 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.223648 116.891892 30.223648 87.668244 58.945946 1.770453942 -0.021584 158 88 SH20039 20039 YBR186W spliced 30.086635 89.715537 59.901086 1.777434696 -0.063376 158 89 SH18239 18239 YML026C_13_223828_222987_INTRON_48_448 intron 34.780083 130.819092 34.780083 97.039009 65.909546 1.81894832 -0.055389 158 90 SH16868 16868 YGL187C_7_150529_149708_INTRON_1_342 intron 28.162315 106.82142 28.162315 79.659105 53.91071 1.731675051 -0.021699 158 91 SH12450 12450 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.911059 125.784338 36.911059 89.873279 63.392169 1.802035612 0.151215 158 92 SH20266 20266 YDR424C spliced 27.264276 69.956275 48.6102755 1.686728082 0.043763 158 93 SH8490 8490 snR19 / U1 RNA 5' 37.344624 117.803017 77.5738205 1.889715181 -0.393812 158 94 SH19328 19328 YPL218W_16_138697_139408_INTRON_29_167 intron 26.435105 124.720923 26.435105 99.285818 62.8604615 1.798377565 -0.39335 158 95 SH13571 13571 MT COX1 Exon 6 28.425132 89.044123 28.425132 61.618991 45.0220615 1.653425377 0.245833 158 96 SH14046 14046 MT COB Cytbi4 30.54061 115.446377 30.54061 85.905767 58.2231885 1.765095985 0.023797 158 97 SH15568 15568 YBR084C-A_2_415219_414144_INTRON_3_508 intron 30.801924 130.437527 30.801924 100.635603 65.7187635 1.817689384 -0.233113 158 98 SH2676 2676 Pro4 tRNA-intron 46 60 453.744333 403.023434 428.3838835 2.631833124 0.351406 158 99 SH14730 14730 MT tRNA cys; tRNA his intergenic / tRNA his 26.225783 104.306792 26.225783 79.081009 52.653396 1.721426387 -0.148672 158 100 SH9267 9267 RUF1 5' 37.954227 90.33734 64.1457835 1.807168114 0.164578 158 101 SH7282 7282 snR66 5' 27.545193 85.623903 56.584548 1.752697851 -0.135742 158 102 SH13530 13530 MT COX1 intronic 25.771873 95.536969 25.771873 70.765096 48.2684845 1.683663663 -0.075679 158 103 SH15584 15584 YBR084C-A_2_415219_414144_INTRON_3_508 intron 27.822198 105.054537 27.822198 78.232339 53.0272685 1.724499257 -0.026497 158 104 SH5815 5815 snR35 snR35 261 278 27.430404 104.0677 65.749052 1.817889495 -0.416651 159 2 SH15611 15611 YBR181C_2_592732_591670_INTRON_7_358 5' exon 28.02852 112.043499 28.02852 85.014979 56.5217495 1.752215596 -0.095822 159 3 SH11658 11658 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5176 5191 209.086555 166.480666 187.7836105 2.273657685 0.824909 159 4 SH8345 8345 snoRNA cluster4 snR53 27.580921 92.362136 27.580921 65.781215 46.681068 1.669140784 0.125049 159 5 SH2058 2058 Lys4 5' flank 38.554884 100.159414 69.357149 1.841091233 -0.034534 159 6 SH10245 10245 RUF6 3' 27.546858 77.878028 52.712443 1.721913144 -0.040692 159 7 SH15645 15645 YBR189W_2_604466_605466_INTRON_8_420 exon/intron 30.028583 119.512697 30.028583 90.484114 60.2563485 1.78000281 -0.079157 159 8 SH20157 20157 YDL130W spliced 30.211933 75.094776 52.6533545 1.721426045 0.169746 159 9 SH2188 2188 Met2 71-72 + 3' flank 71 28.089615 75.667279 51.878447 1.714986967 0.024904 159 10 SH5401 5401 snR31 snR31 71 85 32.734475 93.377138 63.0558065 1.799725085 -0.029087 159 11 SH10435 10435 RUF8 RUF8 101 121 28.607141 77.513345 53.060243 1.724769235 0.035169 159 12 SH8095 8095 snoRNA cluster 2 3' 28.621371 108.384001 28.621371 80.76263 54.6920005 1.737923809 -0.005008 159 13 SH1950 1950 Lys2 5' flank 27.927422 63.071502 45.499462 1.658006261 0.189457 159 14 SH10531 10531 RUF8 RUF8 581 602 28.703417 70.671089 49.687253 1.696244987 0.133069 159 15 SH11370 11370 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3736 3753 1011.098122 935.827981 973.4630515 2.988319472 0.049675 159 16 SH16210 16210 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.406473 107.013386 29.406473 78.606913 54.006693 1.732447585 0.073067 159 17 SH3047 3047 Ser3 5' flank 30.170751 86.911729 58.54124 1.767461917 -0.010521 159 18 SH5592 5592 snR33 3' 29.004007 66.518891 47.761449 1.679077494 0.211235 159 19 SH4307 4307 telomerase RNA telomerase 571 587 27.517686 73.514565 50.5161255 1.703430034 0.013972 159 20 SH4232 4232 telomerase RNA telomerase 196 210 36.869173 93.138364 65.0037685 1.812938535 0.07778 159 21 SH20134 20134 YDL083C spliced 28.337664 84.450029 56.3938465 1.751231718 -0.068478 159 22 SH1499 1499 Leu3 5' flank 30.80318 83.98208 57.39263 1.758856127 0.070289 159 23 SH11827 11827 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6021 6036 6941.570408 4219.342819 5580.456614 3.746669736 0.195528 159 24 SH5533 5533 snR33 5' 28.676557 80.240159 54.458358 1.736064543 0.005119 159 25 SH20677 20677 YIL106W spliced 28.732619 83.365859 56.049239 1.74856972 -0.029462 159 26 SH17634 17634 YJR094W-A_10_608000_608553_INTRON_3_277 intron 28.619685 103.903227 28.619685 76.283542 52.4516135 1.719758852 0.052007 159 27 SH10401 10401 RUF8 5' 28.362582 80.977248 54.669915 1.737748399 -0.024779 159 28 SH10180 10180 RUF6 RUF6 746 760 32.575355 89.01832 60.7968375 1.783880989 0.055064 159 29 SH7363 7363 snR68 snR68 36 48 2478.360844 1835.781918 2157.071381 3.333864517 0.171172 159 30 SH14223 14223 MT ATP9 ATP9 28.346688 91.089719 28.346688 63.743031 46.0448595 1.663181152 0.207991 159 31 SH7090 7090 snR63 5' 28.680257 81.57844 55.1293485 1.74138286 -0.011199 159 32 SH13452 13452 MT COX1 intronic 26.595251 92.235539 26.595251 66.640288 46.6177695 1.66855149 0.042515 159 33 SH13585 13585 MT COX1 exon 6 / 3' 26.406399 96.097454 26.406399 70.691055 48.548727 1.686177847 -0.027834 159 34 SH10191 10191 RUF6 RUF6 801 817 34.710357 88.669885 61.690121 1.790215622 0.126047 159 35 SH9917 9917 RUF5-1 RUF5-1 391 408 27.536174 79.822638 53.679406 1.729807701 -0.066116 159 36 SH1109 1109 Gly4 tRNA 21 35 29.621612 81.020207 55.3209095 1.742889311 0.056526 159 37 SH17893 17893 YLR048W_12_242233_243350_INTRON_91_449 intron 27.717609 98.376213 27.717609 71.658604 49.6881065 1.696252447 0.052449 159 38 SH6402 6402 snR43 3' 30.237724 78.424139 54.3309315 1.735047151 0.12792 159 39 SH14389 14389 MT 21S rRNA 5' 26.054157 97.746684 26.054157 72.692527 49.373342 1.693492525 -0.080486 159 40 SH11700 11700 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5386 5399 2702.250524 1441.33978 2071.795152 3.316346812 0.665929 159 41 SH8587 8587 snR19 / U1 RNA U1 431 447 28.918178 83.870191 56.3941845 1.751234321 -0.023371 159 42 SH569 569 Cys1 3' flank 31.259635 85.223024 58.2413295 1.76523128 0.067286 159 43 SH435 435 Asp1 5' flank - tRNA16 5' flank 16 28.663004 79.972257 54.3176305 1.734940816 0.007577 159 44 SH7375 7375 snR68 snR68 96 113 29.216184 77.469272 53.342728 1.727075222 0.075431 159 45 SH11475 11475 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4261 4277 591.271033 516.589817 553.930425 2.74345522 0.291593 159 46 SH17408 17408 YIL106W_9_166412_167441_INTRON_21_105 5' exon 29.698705 112.634532 29.698705 83.935827 56.817266 1.754480332 0.02227 159 47 SH8584 8584 snR19 / U1 RNA U1 416 432 28.741493 77.497293 53.119393 1.725253104 0.044204 159 48 SH8651 8651 snR19 / U1 RNA 3' 27.959292 82.030709 54.9950005 1.74032321 -0.064704 159 49 SH14892 14892 MT tRNA Ile 5' 25.877054 95.810347 25.877054 70.933293 48.4051735 1.684891781 -0.070113 159 50 SH7842 7842 snoRNA cluster1 snR74 27.51208 106.751419 27.51208 80.239339 53.8757095 1.731393003 -0.072979 159 51 SH10767 10767 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 721 736 30.930855 86.467192 58.6990235 1.768630877 0.030713 159 52 SH3954 3954 RNase MRP RNaseMRP 186 200 28.707624 75.803752 52.255688 1.71813357 0.064105 159 53 SH20762 20762 YJR145C spliced 273.15144 359.626208 316.388824 2.500221134 -0.110931 159 54 SH16532 16532 YER131W_5_423587_424307_INTRON_1_361 intron 35.310726 123.714106 35.310726 89.40338 62.357053 1.794885582 0.123975 159 55 SH17059 17059 YGR214W_7_920570_921783_INTRON_91_545 intron 29.030614 100.282724 29.030614 72.25211 50.641362 1.704505378 0.13323 159 56 SH17648 17648 YJR145C_10_702761_701720_INTRON_15_270 intron 26.761696 104.505397 26.761696 78.743701 52.7526985 1.72224468 -0.106244 159 57 SH7371 7371 snR68 snR68 76 100 28.846222 71.220552 50.033387 1.699259903 0.135195 159 58 SH358 358 Arg5 3' flank 165.954753 258.573316 212.2640345 2.326876415 -0.190877 159 59 SH4117 4117 SRP RNA SRP RNA 476 492 31.625123 86.896208 59.2606655 1.772766524 0.052766 159 60 SH11234 11234 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3056 3073 25085.02585 22965.00154 24025.01369 4.380663644 -0.808202 159 61 SH12660 12660 MT_15S MT_15S 30.140675 112.010689 30.140675 82.870014 56.5053445 1.752089527 0.061811 159 62 SH18086 18086 YLR344W_12_819312_820142_INTRON_20_466 intron/exon 27.796758 103.559934 27.796758 76.763176 52.279967 1.718335305 -0.00924 159 63 SH8131 8131 snoRNA cluster 3; snR41 34.684472 119.661877 34.684472 85.977405 60.3309385 1.780540081 0.188026 159 64 SH8534 8534 snR19 / U1 RNA U1 166 182 32.041799 89.843714 60.9427565 1.784922094 0.018683 159 65 SH9536 9536 RUF3 RUF3 66 86 29.703755 68.406703 49.055229 1.690685307 0.230291 159 66 SH1434 1434 Leu2 5' flank 29.533968 81.586252 55.56011 1.744763097 0.043972 159 67 SH5122 5122 snR11 snR11 211 228 31.38126 88.078308 59.729784 1.776190944 0.021503 159 68 SH11577 11577 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4771 4787 33.432922 86.648406 60.040664 1.778445487 0.131586 159 69 SH18879 18879 YNR053C_14_723108_721117_INTRON_811_1341 intron 29.091109 113.184966 29.091109 85.093857 57.092483 1.756578931 -0.02664 159 70 SH19964 19964 YBL059W spliced 29.573601 84.053975 56.813788 1.754453746 0.014444 159 71 SH1551 1551 Leu4 5' flank 29.842529 73.72525 51.7838895 1.714194667 0.164994 159 72 SH3594 3594 Val1 5' flank 29.81958 74.62098 52.22028 1.717839196 0.151453 159 73 SH784 784 Glu1 5' flank 29.672712 70.321018 49.996865 1.698942773 0.201573 159 74 SH13285 13285 MT COX1 Exon 5a 28.174618 94.905507 28.174618 67.730889 47.9527535 1.68081355 0.138036 159 75 SH13117 13117 MT COX1 COX1ai3 29.779636 107.630541 29.779636 78.850905 54.3152705 1.734921947 0.093724 159 76 SH20290 20290 YDR500C spliced 33.481577 93.86112 63.6713485 1.803944048 -0.020296 159 77 SH4267 4267 telomerase RNA telomerase 371 388 29.686161 64.066745 46.876453 1.670954742 0.292046 159 78 SH21226 21226 YOR234C spliced 33.799997 96.759289 65.279643 1.814777771 -0.073959 159 79 SH12054 12054 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7156 7173 33.756062 96.28761 65.021836 1.813059228 -0.065147 159 80 SH866 866 Glu2 3' flank 27.517842 69.358499 48.4381705 1.685187732 0.069825 159 81 SH3237 3237 Thr1 tRNA 41 56 72.790817 142.027448 107.4091325 2.031041209 -0.117623 159 82 SH19563 19563 CBP1 2.2 40.134041 85.987315 63.060678 1.799758636 0.312525 159 83 SH7571 7571 snR189 5' 28.943422 69.453749 49.1985855 1.691952617 0.165778 159 84 SH17037 17037 YGR183C_7_859471_859058_INTRON_4_216 intron 29.07104 120.792515 29.07104 92.721475 60.8962575 1.784590603 -0.160317 159 85 SH12068 12068 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7226 7245 28.887896 79.133379 54.0106375 1.732479303 0.032861 159 86 SH16326 16326 YDR471W_4_1401759_1402553_INTRON_32_415 intron 28.373342 98.967487 28.373342 71.594145 49.9837435 1.698828779 0.098342 159 87 SH928 928 Glu3 3' flank 30.089059 88.183722 59.1363905 1.771854813 -0.036626 159 88 SH20601 20601 YHR041C spliced 29.901783 76.933837 53.41781 1.727686079 0.126079 159 89 SH11466 11466 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4216 4234 2037.547709 1677.251061 1857.399385 3.268905297 0.057312 159 90 SH21214 21214 YOR122C spliced 27.855201 69.203412 48.5293065 1.686004085 0.09544 159 91 SH10832 10832 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1046 1066 521.976533 494.626994 508.3017635 2.706121616 0.201295 159 92 SH9900 9900 RUF5-1 RUF5-1 306 322 26.746977 66.427198 46.5870875 1.66826556 0.056544 159 93 SH2146 2146 Met1 3' flank 30.328772 68.385985 49.3573785 1.693352085 0.270684 159 94 SH16604 16604 YFL034C-B_6_63992_63015_INTRON_21_134 5' exon 32.02984 116.670759 32.02984 85.640919 58.8353795 1.769638559 0.092296 159 95 SH11684 11684 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5306 5323 64.925198 114.507229 89.7162135 1.952870936 0.166343 159 96 SH19133 19133 YPL075W_16_412249_415357_INTRON_9_759 intron 29.598991 107.458146 29.598991 78.859155 54.229073 1.734232181 0.082155 159 97 SH5091 5091 snR11 snR11 56 73 25.960984 64.505211 45.2330975 1.655456329 0.029453 159 98 SH17723 17723 YKL156W_11_158616_159214_INTRON_4_353 exon/intron 28.316072 96.594369 28.316072 69.278297 48.7971845 1.688394765 0.126004 159 99 SH1677 1677 Leu6 5' flank 25.751315 64.357679 45.054497 1.653738145 0.016623 159 100 SH16594 16594 YFL034C-A_6_64931_64242_INTRON_13_333 intron 33.079762 115.419111 33.079762 83.339349 58.2095555 1.764994283 0.177608 159 101 SH91 91 Ala2 3' flank 27.00237 79.447501 53.2249355 1.726115144 -0.098284 159 102 SH3958 3958 RNase MRP RNaseMRP 206 218 44.084945 98.46258 71.2737625 1.852929686 0.112154 159 103 SH18500 18500 YMR194W_13_651144_651909_INTRON_17_479 intron 27.944907 102.587313 27.944907 75.642406 51.7936565 1.714276572 0.015501 159 104 SH10595 10595 RUF8 RUF8 901 913 28.07898 85.451527 56.7652535 1.754082582 -0.097561 160 2 SH3234 3234 Thr1 tRNA 26 42 30.851677 87.405526 59.1286015 1.771797607 0.010586 160 3 SH7733 7733 snoRNA cluster1 intergenic 30.687421 118.289274 30.687421 88.601853 59.644637 1.7755714 -0.017589 160 4 SH1224 1224 Ile1 3' flank 30.339165 87.392675 58.86592 1.769863936 -0.011608 160 5 SH20656 20656 YIL018W spliced 61.785822 117.690076 89.737949 1.952976139 0.065248 160 6 SH13628 13628 MT ATP6 ATP6 27.432967 99.555857 27.432967 73.12289 50.2779285 1.701377376 0.01316 160 7 SH743 743 Gln4 5' flank - tRNA7 7 27.441296 78.61216 53.026728 1.72449483 -0.05732 160 8 SH21686 21686 copy of SH10241 27.496326 78.293644 52.894985 1.723414498 -0.049481 160 9 SH4591 4591 U3b (snR17b) 3' 40.621786 98.804783 69.7132845 1.843315545 0.036519 160 10 SH4758 4758 snR5 5' 27.675112 82.654605 55.1648585 1.741662509 -0.091539 160 11 SH17212 17212 YHR039C-A_8_187670_187164_INTRON_4_165 intron 30.371119 128.177448 30.371119 98.806329 64.588724 1.810156705 -0.2079 160 12 SH8751 8751 LSR1 / U2 RNA U2 396 410 30.690056 83.955437 57.3227465 1.758326991 0.065856 160 13 SH14821 14821 "MT tRNAs (Lys, Arg1, Gly)" intergenic / tRNA Gly 28.053851 110.038101 28.053851 82.98425 55.5190505 1.74444203 -0.069913 160 14 SH21056 21056 YMR194W spliced 168.006613 175.167827 171.58722 2.234484938 0.476255 160 15 SH18169 18169 YLR448W_12_1028848_1029762_INTRON_16_399 intron 32.49697 135.552719 32.49697 104.055749 68.2763595 1.834270356 -0.255192 160 16 SH4567 4567 U3b (snR17b) U3b 391 405 34.362505 100.650056 67.5062805 1.82934418 -0.139907 160 17 SH3522 3522 Tyr1 3' flank 28.405736 76.981446 52.693591 1.721757796 0.028751 160 18 SH18770 18770 YNL246W_14_185459_186348_INTRON_33_127 intron 28.802343 110.144689 28.802343 82.342346 55.5723445 1.744858719 -0.012527 160 19 SH11771 11771 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5741 5754 88.80411 140.126086 114.465098 2.058673084 0.120905 160 20 SH12417 12417 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.605449 120.03368 27.605449 93.428231 60.51684 1.781876242 -0.241299 160 21 SH6369 6369 snR43 snR43 86 103 26.136545 63.727602 44.9320735 1.652556461 0.054376 160 22 SH8386 8386 snoRNA cluster 5 5'/snR190 31.219327 113.207963 31.219327 82.988636 57.1039815 1.75666639 0.106659 160 23 SH14455 14455 MT 21S rRNA 21S rRNA3 31.440319 116.297872 31.440319 85.857553 58.648936 1.768260138 0.063525 160 24 SH10980 10980 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1786 1804 25921.50858 14066.72569 19994.11713 4.300902232 0.008708 160 25 SH14810 14810 "MT tRNAs (Lys, Arg1, Gly)" intergenic / tRNA Arg1 31.056236 120.766576 31.056236 90.71034 60.883288 1.784498098 -0.037982 160 26 SH19744 19744 Negative Control 30.671892 97.612995 64.1424435 1.8071455 -0.174803 160 27 SH17376 17376 YIL052C_9_257061_256224_INTRON_38_509 intron 30.245846 114.387106 30.245846 85.14126 57.693553 1.761127285 0.024645 160 28 SH3691 3691 Val3 5' flank 27.543224 67.907832 47.725528 1.678750742 0.091884 160 29 SH18883 18883 YOL047C_15_242745_241612_INTRON_244_306 5' exon 40.719856 139.662193 40.719856 99.942337 70.3310965 1.847147388 0.014891 160 30 SH9831 9831 RUF5-1 5' 61.915926 110.614375 86.2651505 1.935835384 0.186257 160 31 SH9872 9872 RUF5-1 RUF5-1 166 181 33.000241 96.247465 64.623853 1.810392848 -0.083656 160 32 SH17964 17964 YLR185W_12_522665_523290_INTRON_8_366 intron 28.851352 103.032233 28.851352 75.180881 52.0161165 1.716137925 0.081775 160 33 SH16747 16747 YGL076C_7_365994_364333_INTRON_565_1032 intron 33.100772 111.679232 33.100772 79.57846 56.339616 1.750813883 0.249893 160 34 SH18962 18962 YOL127W_15_80347_81189_INTRON_14_427 intron 27.706362 107.903752 27.706362 81.19739 54.451876 1.736012847 -0.071603 160 35 SH20631 20631 YHR123W spliced 37.397188 91.347211 64.3721995 1.808698349 0.129366 160 36 SH6643 6643 snR48 snR48 41 57 34.589452 95.266023 64.9277375 1.81243027 -0.022642 160 37 SH9729 9729 RUF4 RUF4 421 435 28.309908 86.024619 57.1672635 1.757147404 -0.08882 160 38 SH17310 17310 YHR203C_8_505526_504472_INTRON_15_283 intron 24.493069 95.411637 24.493069 71.918568 48.2058185 1.683099461 -0.189205 160 39 SH17613 17613 YJR021C_10_469271_468247_INTRON_317_396 exon/intron 27.198067 111.745211 27.198067 85.547144 56.3726055 1.751068108 -0.158739 160 40 SH8975 8975 snR17a / U3a U3a 161 178 32.407069 89.023335 60.715202 1.783297444 0.048045 160 41 SH16091 16091 YDR025W_4_491510_492319_INTRON_46_384 intron 28.553702 112.00599 28.553702 84.452288 56.502995 1.752071469 -0.054195 160 42 SH7548 7548 snR79 81-84 + 3' 81 28.682306 67.429933 48.0561195 1.681748699 0.176702 160 43 SH21905 21905 copy of SH19400 28.23778 87.239785 57.7387825 1.761467622 -0.107671 160 44 SH9125 9125 snR14 / U4 RNA 3' 36.246403 105.650805 70.948604 1.850943855 -0.195429 160 45 SH4173 4173 telomerase RNA 5' 28.949697 77.472941 53.211319 1.726004024 0.058119 160 46 SH21741 21741 copy of SH12551 26.682419 76.472161 51.57729 1.712458519 -0.083238 160 47 SH16479 16479 YER102W_5_362729_363698_INTRON_1_360 intron 39.938266 133.271839 39.938266 94.333573 67.1359195 1.826954941 0.118075 160 48 SH7428 7428 snR69 snR69 41 53 38.54332 95.251491 66.8974055 1.825409275 0.068851 160 49 SH566 566 Cys1 3' flank 28.099539 76.219555 52.159547 1.717333811 0.018288 160 50 SH115 115 Arg1 5' flank 25.710021 83.921573 54.815797 1.738905733 -0.245544 160 51 SH7392 7392 snR68 3' 35.78882 87.32101 61.554915 1.789262736 0.183328 160 52 SH21179 21179 YNR053C spliced 31.147276 89.431062 60.289169 1.780239298 -0.012092 160 53 SH19626 19626 RNA14 2.2 31.852586 94.177902 63.015244 1.799445622 -0.06977 160 54 SH1603 1603 Leu4 3' flank 26.068694 67.449742 46.759218 1.669867239 -0.007582 160 55 SH7203 7203 snR64 snR64 81 93 27.508162 83.171136 55.339649 1.7430364 -0.109177 160 56 SH20384 20384 YFL034C-B spliced 28.416234 82.631482 55.523858 1.744479635 -0.041465 160 57 SH9033 9033 snR17a / U3a U3a 451 465 51.039187 106.091237 78.565212 1.895230287 0.089187 160 58 SH560 560 Cys1 3' flank 28.306419 79.512318 53.9093685 1.731664244 -0.010235 160 59 SH512 512 Asp2 3' flank 31.10739 87.112481 59.1099355 1.771660485 0.026829 160 60 SH5967 5967 snR36 snR36 291 308 29.34964 83.701819 56.5257295 1.752246176 0.006545 160 61 SH11816 11816 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5966 5979 58.826248 128.631936 93.729092 1.97187441 -0.151734 160 62 SH6740 6740 snR49 3' 27.720199 71.482122 49.6011605 1.695491838 0.054996 160 63 SH14548 14548 MT 21S rRNA 21S rRNA3 29.859933 103.718994 29.859933 74.859061 52.359497 1.718995466 0.150812 160 64 SH14959 14959 MT tRNA Met 3' 33.237072 120.940753 33.237072 88.703681 60.9703765 1.785118877 0.087457 160 65 SH13049 13049 MT COX1 COX1ai2 27.404704 101.523593 27.404704 75.118889 51.2617965 1.709793822 -0.014667 160 66 SH993 993 Gly2 5' flank 27.323217 76.236433 51.779825 1.714160578 -0.034721 160 67 SH2141 2141 Met1 3' flank 27.012383 72.446485 49.729434 1.696613516 -0.007677 160 68 SH13480 13480 MT COX1 intronic 26.886942 91.292579 26.886942 65.405637 46.1462895 1.664136786 0.081467 160 69 SH16459 16459 YER074W-A_0_5_307649_INTRON_95_196 3' exon 29.391668 106.296055 29.391668 77.904387 53.6480275 1.729553759 0.081107 160 70 SH7702 7702 snoRNA cluster1 intergenic 29.647804 112.550323 29.647804 83.902519 56.7751615 1.754158378 0.020588 160 71 SH4145 4145 SRP RNA SRP RNA 616 628 78.588574 167.143845 122.8662095 2.08943246 -0.328145 160 72 SH9470 9470 RUF2 RUF2 191 205 31.897244 90.498928 61.198086 1.78673784 0.00139 160 73 SH12482 12482 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S/3' flank 31.74996 107.328036 31.74996 76.578076 54.164018 1.733710874 0.24372 160 74 SH2823 2823 Pro7 5' flank 29.255999 81.646669 55.451334 1.743911998 0.025414 160 75 SH21896 21896 copy of SH19001 26.514471 81.636734 54.0756025 1.733001367 -0.159856 160 76 SH16033 16033 YDL191W_4_117665_118518_INTRON_4_494 intron 32.623563 134.447528 32.623563 102.823965 67.723764 1.830741088 -0.227687 160 77 SH14945 14945 MT tRNA Met 5' 27.810603 112.591722 27.810603 85.781119 56.795861 1.754316688 -0.11951 160 78 SH17513 17513 YJL136C_10_156971_156248_INTRON_25_484 intron 27.621893 107.88406 27.621893 81.262167 54.44203 1.735934311 -0.078155 160 79 SH5707 5707 snR34 snR34 456 477 25.133155 82.230813 53.681984 1.729828558 -0.268103 160 80 SH7481 7481 snR71 snR71 21 36 49.711489 124.234063 86.972776 1.939383332 -0.246925 160 81 SH3345 3345 Thr3 71-72 + 3' flank 71 27.809621 76.712354 52.2609875 1.718177612 -0.007705 160 82 SH5452 5452 snR32 5' 26.130454 76.235609 51.1830315 1.709126005 -0.120522 160 83 SH16485 16485 YER102W_5_362729_363698_INTRON_1_360 intron 30.722014 102.761117 30.722014 73.039103 51.8805585 1.715004643 0.229081 160 84 SH3209 3209 Thr1 5' flank 32.973537 94.729808 63.8516725 1.805172277 -0.052073 160 85 SH4354 4354 telomerase RNA telomerase 806 824 28.445137 77.414074 52.9296055 1.723698657 0.025751 160 86 SH7632 7632 snR189 3' 28.197602 73.236003 50.7168025 1.705151865 0.06462 160 87 SH6191 6191 snR40 snR40 16 30 39.019355 95.524168 67.2717615 1.8278328 0.073054 160 88 SH19317 19317 YPL198W_16_173151_174701_INTRON_12_420 intron 27.765509 101.798915 27.765509 75.033406 51.3994575 1.710958535 0.01146 160 89 SH9126 9126 snR7 U5 RNA 5' 33.501737 90.177777 61.839757 1.791267774 0.061512 160 90 SH4333 4333 telomerase RNA telomerase 701 720 27.86753 81.301828 54.584679 1.737070761 -0.061962 160 91 SH11510 11510 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4436 4454 13337.04906 8375.45669 10856.25288 4.035679951 -0.038854 160 92 SH21698 21698 copy of SH10663 30.766863 86.655707 58.711285 1.768721586 0.020229 160 93 SH17906 17906 YLR061W_12_263195_263949_INTRON_13_401 intron 34.241379 242.397014 34.241379 209.155635 121.698507 2.08528525 -1.609027 160 94 SH7440 7440 snR69 101 + 3' 101 27.591786 78.401338 52.996562 1.724247697 -0.044327 160 95 SH13202 13202 MT COX1 Exon4 31.136189 114.692521 31.136189 84.556332 57.8462605 1.762275289 0.074139 160 96 SH1217 1217 Ile1 tRNA 46 58 51.467347 110.303484 80.8854155 1.907870221 0.019078 160 97 SH1726 1726 Leu7 5' flank 27.304914 91.006994 59.155954 1.771998463 -0.215331 160 98 SH8004 8004 snoRNA cluster 2 intergenic 29.661585 116.959257 29.661585 88.297672 58.9796285 1.770702033 -0.057775 160 99 SH4294 4294 telomerase RNA telomerase 506 522 27.187157 72.907003 50.04708 1.699378744 -0.001337 160 100 SH2011 2011 Lys3 tRNA 1 17 40.707924 88.754148 64.731036 1.811112558 0.259532 160 101 SH13333 13333 MT COX1 COX1-ai5a 56.234659 164.128022 56.234659 108.893363 82.564011 1.916790783 0.125298 160 102 SH15194 15194 MT COX3 cox3 27.656109 104.041882 27.656109 77.385773 52.520941 1.720332499 -0.026886 160 103 SH16546 16546 YER133W_5_432491_433954_INTRON_178_702 intron 30.233353 115.646348 30.233353 86.412995 58.323174 1.765841151 0.001156 160 104 SH17715 17715 YKL081W_11_282533_284097_INTRON_206_531 intron 28.255617 111.36004 28.255617 84.104423 56.18002 1.749581889 -0.069835 161 2 SH13946 13946 MT COB Cytbi3 28.522961 106.159527 28.522961 78.636566 53.5797635 1.729000792 0.015212 161 3 SH11272 11272 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3246 3264 28.542795 74.025796 51.2842955 1.709984394 0.077018 161 4 SH8311 8311 snoRNA cluster4 intergenic 28.299258 98.328424 28.299258 71.029166 49.664212 1.696043549 0.10091 161 5 SH9064 9064 snR14 / U4 RNA 5' 27.727601 73.843051 50.785326 1.705738245 0.024329 161 6 SH6938 6938 snR58 snR58 51 67 31.408759 82.686874 57.0478165 1.756239026 0.120391 161 7 SH12192 12192 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7846 7859 39.718835 96.341209 68.030022 1.832700611 0.070106 161 8 SH18932 18932 YOL121C_15_92849_92025_INTRON_21_410 intron 26.901521 92.586408 26.901521 66.684887 46.793204 1.670182783 0.063924 161 9 SH16185 16185 YDR367W_4_1212837_1213603_INTRON_31_131 intron 24.824396 99.320775 24.824396 75.496379 50.1603875 1.700360883 -0.209917 161 10 SH17365 17365 YIL052C_9_257061_256224_INTRON_38_509 intron 37.782898 134.409759 37.782898 97.626861 67.7048795 1.830619969 0.00165 161 11 SH19530 19530 CBP1 1.2 26.365818 79.248728 52.807273 1.722693741 -0.140725 161 12 SH12015 12015 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6961 6986 27.785459 72.967849 50.376654 1.702229318 0.039784 161 13 SH8928 8928 snR17a / U3a 5' 29.729957 91.924588 60.8272725 1.784098343 -0.116967 161 14 SH21182 21182 YOL047C spliced 29.015286 84.289725 56.6525055 1.753219122 -0.022051 161 15 SH2590 2590 Pro3 5' flank 28.490534 91.879197 60.1848655 1.779487294 -0.173197 161 16 SH12668 12668 MT_15S 3' 27.388217 139.211582 27.388217 112.823365 70.105791 1.845753894 -0.565653 161 17 SH16121 16121 YDR064W_4_579453_580447_INTRON_22_560 intron 30.592482 170.741368 30.592482 141.148886 85.870684 1.933844922 -0.931465 161 18 SH18516 18516 YMR201C_13_667043_665844_INTRON_28_111 intron/exon 32.712848 119.748823 32.712848 88.035975 60.3744115 1.78085291 0.077868 161 19 SH21422 21422 Trp1 spliced 28.668042 79.999983 54.3340125 1.735071778 0.007561 161 20 SH17202 17202 YHR021C_8_148660_147862_INTRON_4_553 3' exon 44.800071 141.329454 44.800071 97.529383 71.164727 1.852264788 0.145261 161 21 SH7273 7273 snR65 3' 28.327591 80.039711 54.183651 1.733868265 -0.015446 161 22 SH7643 7643 snoRNA cluster1 5' 28.136742 106.921548 28.136742 79.784806 53.960774 1.73207817 -0.024989 161 23 SH738 738 Gln4 5' flank 29.633083 77.984516 53.8087995 1.730853303 0.09549 161 24 SH17874 17874 YLR048W_12_242233_243350_INTRON_91_449 5' exon 29.42272 103.51528 29.42272 75.09256 52.25764 1.718149793 0.119902 161 25 SH15818 15818 YDL064W_4_337486_338069_INTRON_39_148 5' exon 28.909305 107.571307 28.909305 79.662002 54.2856535 1.73468507 0.02759 161 26 SH5755 5755 snR35 5' 37.450997 95.491801 66.471399 1.822634819 0.04 161 27 SH16919 16919 YGL251C_7_31636_27921_INTRON_59_210 intron 27.939642 113.385568 27.939642 86.445926 57.192784 1.757341237 -0.118518 161 28 SH17566 17566 YJL189W_10_75932_76473_INTRON_7_392 intron 31.795823 110.652133 31.795823 79.85631 55.8260665 1.746837029 0.190668 161 29 SH11567 11567 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4721 4734 107.673584 150.577058 129.125321 2.111011414 0.209308 161 30 SH21582 21582 copy of SH5871 29.692763 94.412343 62.052553 1.792759654 -0.159952 161 31 SH7493 7493 snR71 81-90 + 3' 81 28.247581 79.883601 54.065591 1.732920955 -0.01882 161 32 SH15059 15059 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.514398 106.601852 26.514398 81.087454 53.800926 1.730789751 -0.153102 161 33 SH20154 20154 YDL125C spliced 28.676697 82.156983 55.41684 1.743641758 -0.018508 161 34 SH12083 12083 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7301 7319 30.052173 83.893003 56.972588 1.755665948 0.038895 161 35 SH1898 1898 Lys1 5' flank 30.944566 88.545387 59.7449765 1.776301395 -0.005434 161 36 SH4842 4842 snR8 5' - 7 7 31.878084 84.67175 58.274917 1.765481664 0.103546 161 37 SH15493 15493 YBL092W_2_45639_46364_INTRON_1_333 intron 40.39102 124.905928 40.39102 85.514908 62.952964 1.799016183 0.329167 161 38 SH3626 3626 Val1 3' flank 35.408306 97.307431 66.3578685 1.821892427 -0.045697 161 39 SH7981 7981 snoRNA cluster 2 snR57 40.89844 147.302567 40.89844 107.404127 74.1512835 1.870118673 -0.128454 161 40 SH4782 4782 snR5 snR5 81 98 27.258653 76.120684 51.6896685 1.713403747 -0.037671 161 41 SH10436 10436 RUF8 RUF8 106 125 27.949872 77.794183 52.8720275 1.723225965 -0.012247 161 42 SH13332 13332 MT COX1 COX1-ai5a 30.334272 109.484116 30.334272 80.149844 55.242058 1.74226985 0.112134 161 43 SH3448 3448 Trp1 tRNA 71 85 98.762482 208.235388 153.498935 2.186105367 -0.449269 161 44 SH10130 10130 RUF6 RUF6 496 510 28.007873 73.131708 50.5697905 1.703891154 0.052986 161 45 SH473 473 Asp2 5' flank 39.132346 104.285669 71.7090075 1.855573712 -0.105572 161 46 SH15501 15501 YBL092W_2_45639_46364_INTRON_1_333 3' exon 28.429611 113.196863 28.429611 85.767252 57.0984315 1.756624178 -0.07787 161 47 SH19797 19797 Negative Control 31.052079 81.504069 56.278074 1.750339226 0.127393 161 48 SH4731 4731 snR4 3' 26.458244 62.300664 44.379454 1.647181955 0.100255 161 49 SH13550 13550 MT COX1 intronic 30.393538 120.547269 30.393538 91.153731 60.7736345 1.78371521 -0.074394 161 50 SH6697 6697 snR49 snR49 11 27 28.162501 84.944181 56.553341 1.752458267 -0.086002 161 51 SH59 59 Ala2 5' flank 27.544137 77.224036 52.3840865 1.719199375 -0.032435 161 52 SH19494 19494 YPT1 39.089452 93.439355 66.2644035 1.821280293 0.120046 161 53 SH15141 15141 MT tRNA Thr1 reverse complement 5' 25.263804 90.590055 25.263804 66.326251 45.7950275 1.660818324 -0.049721 161 54 SH10624 10624 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 6 28 26.75954 71.29557 49.027555 1.690440236 -0.010421 161 55 SH15574 15574 YBR084C-A_2_415219_414144_INTRON_3_508 intron 30.294606 104.553078 30.294606 75.258472 52.776539 1.722440906 0.172715 161 56 SH10932 10932 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1546 1563 28.036064 66.821063 47.4285635 1.676039971 0.141519 161 57 SH7322 7322 snR66 3' 30.156153 80.929783 55.542968 1.744629083 0.091342 161 58 SH16170 16170 YDR139C_4_733917_733611_INTRON_150_222 intron/exon 25.88282 107.465268 25.88282 82.582448 54.232634 1.734260698 -0.216818 161 59 SH13000 13000 MT COX1 COX1ai2 28.334439 107.891817 28.334439 80.557378 54.4459085 1.735965249 -0.021445 161 60 SH7840 7840 snoRNA cluster1 snR74 28.648834 102.633162 28.648834 74.984328 51.816581 1.714468754 0.071124 161 61 SH14523 14523 MT 21S rRNA 21S rRNA3 410.023956 897.281836 410.023956 488.25788 449.140918 2.652382622 -0.08656 161 62 SH9312 9312 RUF1 RUF1 136 153 29.817511 84.846574 57.3320425 1.758397414 0.010919 161 63 SH20783 20783 YKL006W spliced 129.961177 168.331862 149.1465195 2.173613123 0.237915 161 64 SH12140 12140 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7586 7604 29.60909 80.144415 54.8767525 1.739388403 0.066611 161 65 SH17479 17479 YJL001W_10_434855_435618_INTRON_66_181 intron/exon 29.549829 115.126284 29.549829 86.576455 58.063142 1.763900533 -0.032374 161 66 SH1386 1386 Leu1 tRNA 1 13 157.952023 266.992935 212.472479 2.327302685 -0.304601 161 67 SH6148 6148 snR39B snR39B 81 93 38.629852 93.551356 66.090604 1.820139721 0.107844 161 68 SH14513 14513 MT 21S rRNA 21S rRNA3 87.390308 239.400399 87.390308 153.010091 120.2001995 2.079905188 -0.053577 161 69 SH20063 20063 YBR230C spliced 29.142326 91.172566 60.157446 1.77928939 -0.130979 161 70 SH9320 9320 RUF1 RUF1 176 193 29.307073 76.318046 52.8125595 1.722737216 0.096274 161 71 SH17409 17409 YIL106W_9_166412_167441_INTRON_21_105 5' exon 26.990026 95.999762 26.990026 70.009736 48.499881 1.685740673 0.02356 161 72 SH2271 2271 Phe2 5' flank 26.765187 73.828256 50.2967215 1.701539677 -0.043511 161 73 SH640 640 Gln2 5' flank - tRNA3 5' flank 3 31.165816 93.609005 62.3874105 1.79509696 -0.081928 161 74 SH3302 3302 Thr2 3' flank 28.760829 90.644157 59.702493 1.775992466 -0.139624 161 75 SH14370 14370 MT ORF9 and ORF10 (hypothetical) intergenic / ORF10 29.548114 111.409859 29.548114 82.861745 56.2049295 1.749774407 0.029343 161 76 SH3654 3654 Val2 tRNA 11 26 188.709639 326.483863 257.596751 2.410940381 -0.417923 161 77 SH18721 18721 YNL130C_14_381156_379555_INTRON_30_470 3' exon 30.981914 112.26775 30.981914 82.285836 56.633875 1.753076278 0.109598 161 78 SH21040 21040 YMR133W spliced 27.642953 70.651092 49.1470225 1.691497212 0.060843 161 79 SH6591 6591 snR47 snR47 61 79 197.652275 236.318994 216.9856345 2.336430982 0.17256 161 80 SH11325 11325 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3511 3524 5650.448244 4454.346621 5052.397433 3.703497506 -0.158199 161 81 SH20097 20097 YDL029W spliced 27.874879 73.91537 50.8951245 1.706676181 0.033591 161 82 SH7725 7725 snoRNA cluster1 intergenic 28.164248 105.879605 28.164248 78.715357 53.4398025 1.727864844 -0.009637 161 83 SH19692 19692 Negative Control 27.840081 84.973453 56.406767 1.751331208 -0.108043 161 84 SH16053 16053 YDL191W_4_117665_118518_INTRON_4_494 intron/exon 27.503002 91.300937 27.503002 64.797935 46.1504685 1.664176114 0.134052 161 85 SH804 804 Glu1 tRNA 36 48 459.059489 478.669435 468.864462 2.671047316 0.08965 161 86 SH20080 20080 YCR031C spliced 27.7634 87.490904 57.627152 1.760627157 -0.142471 161 87 SH5032 5032 snR10 snR10 191 205 29.969332 77.32599 53.647661 1.729550792 0.12524 161 88 SH2578 2578 Pro2 3' flank 27.859834 67.160893 47.5103635 1.676788353 0.124508 161 89 SH12823 12823 MT COX1 COX1ai1 30.293508 142.098912 30.293508 112.805404 71.549456 1.854606336 -0.479155 161 90 SH17702 17702 YKL081W_11_282533_284097_INTRON_206_531 exon/intron 27.977121 121.308419 27.977121 94.331298 61.1542095 1.786426357 -0.238281 161 91 SH9883 9883 RUF5-1 RUF5-1 221 235 34.019413 91.398141 62.708777 1.797328331 0.047322 161 92 SH7468 7468 snR71 5' 26.666353 81.394852 54.0306025 1.73263981 -0.146123 161 93 SH8327 8327 snoRNA cluster4 intergenic 36.574624 122.270742 36.574624 86.696118 61.635371 1.789830014 0.216476 161 94 SH2635 2635 Pro3 3' flank 27.812309 76.865656 52.3389825 1.718825275 -0.009522 161 95 SH19527 19527 CBP1 1.2 25.29358 69.683449 47.4885145 1.676588585 -0.096975 161 96 SH12367 12367 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.780139 110.289974 28.780139 82.509835 55.644987 1.745426045 -0.016014 161 97 SH231 231 Arg3 11-27 11 27 26.759917 68.533497 47.646707 1.678032891 0.027521 161 98 SH15864 15864 YDL079C_4_314747_312950_INTRON_413_704 intron 26.839442 108.536391 26.839442 82.696949 54.7681955 1.738528432 -0.149822 161 99 SH9640 9640 RUF4 5' 28.564396 83.879431 56.2219135 1.749905623 -0.046675 161 100 SH4827 4827 snR8 5' 36.492237 91.157979 63.825108 1.804991558 0.11264 161 101 SH20621 20621 YHR101C spliced 27.255291 77.205776 52.2305335 1.717924462 -0.052061 161 102 SH9301 9301 RUF1 RUF1 81 97 28.080851 74.784269 51.43256 1.711238141 0.036069 161 103 SH19830 19830 Negative Control 30.379449 84.201849 57.290649 1.758083742 0.047707 161 104 SH1014 1014 Gly2 61-72 + 3' flank 61 73 27.9408 70.5731 49.25695 1.692467517 0.082542 162 2 SH8067 8067 snoRNA cluster 2 snR61 33.089455 116.906311 33.089455 84.816856 58.9531555 1.770507056 0.150815 162 3 SH6763 6763 snR50 5' - 8 -9 8 31.859661 96.009787 63.934724 1.805736795 -0.1087 162 4 SH15250 15250 MT tRNA fMet 3' 28.297943 105.0208 28.297943 77.722857 53.0104 1.724361081 0.01199 162 5 SH19422 19422 YPR132W_16_794960_795762_INTRON_66_430 intron 32.139704 124.042066 32.139704 92.902362 62.521033 1.796026145 -0.034408 162 6 SH6375 6375 snR43 snR43 116 128 33.397147 84.439349 58.918248 1.770249824 0.170104 162 7 SH13589 13589 MT COX1 3' 27.536731 105.320792 27.536731 78.784061 53.160396 1.725588207 -0.052966 162 8 SH4735 4735 snR4 3' 30.606797 100.94717 65.7769835 1.818073953 -0.244822 162 9 SH8505 8505 snR19 / U1 RNA U1 21 40 26.460262 77.086788 51.773525 1.714107735 -0.107021 162 10 SH3807 3807 RNaseP RNaseP 1 17 39.113011 100.13965 69.6263305 1.842773507 -0.022302 162 11 SH16580 16580 YER179W_5_548416_549512_INTRON_133_224 intron/exon 26.567251 103.954439 26.567251 78.387188 52.4772195 1.719970816 -0.115441 162 12 SH12471 12471 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 324.853221 578.699785 324.853221 254.846564 289.8498925 2.462173144 0.666761 162 13 SH5761 5761 snR35 5' - 7 -9 7 30.80034 96.021914 63.411127 1.802165472 -0.137859 162 14 SH16875 16875 YGL187C_7_150529_149708_INTRON_1_342 intron 28.181157 104.363157 28.181157 77.182 52.6815785 1.721658779 0.01119 162 15 SH18234 18234 YML026C_13_223828_222987_INTRON_48_448 intron 30.089789 122.495887 30.089789 93.406098 61.7479435 1.790622498 -0.125598 162 16 SH9047 9047 snR17a / U3a 3' 27.317892 91.66571 59.491801 1.774457117 -0.225852 162 17 SH2426 2426 Phe5 5' flank 28.645419 105.175833 66.910626 1.825495093 -0.38476 162 18 SH5574 5574 snR33 snR33 156 174 39.30006 89.680798 64.490429 1.809495266 0.209151 162 19 SH18246 18246 YML034W_13_209525_212155_INTRON_1921_2046 5' exon 28.718974 110.460947 28.718974 82.741973 55.7304735 1.746092733 -0.022836 162 20 SH1260 1260 Ile2 5' flank - tRNA12 12 29.302591 90.278879 59.790735 1.776633892 -0.1084 162 21 SH16295 16295 YDR450W_4_1359912_1360787_INTRON_48_482 intron 26.074721 105.772737 26.074721 80.698016 53.3863685 1.72743038 -0.179788 162 22 SH16480 16480 YER102W_5_362729_363698_INTRON_1_360 intron 29.40235 109.560687 29.40235 81.158337 55.2803435 1.742570733 0.040822 162 23 SH12562 12562 MT_15S MT_15S 27.458798 105.880542 27.458798 79.421744 53.440271 1.727868652 -0.066377 162 24 SH4581 4581 U3b (snR17b) 461-462 + 3' 461 29.601206 85.625961 57.6135835 1.760524889 -0.012972 162 25 SH16911 16911 YGL232W_7_62074_63001_INTRON_58_115 3' exon 29.143731 108.689279 29.143731 80.545548 54.8446395 1.739134186 0.031764 162 26 SH16450 16450 YER074W-A_0_5_307649_INTRON_95_196 5' exon 28.663575 109.693112 28.663575 82.029537 55.346556 1.743090602 -0.017816 162 27 SH3571 3571 Tyr2 3' flank 28.179872 82.155066 55.167469 1.74168306 -0.051414 162 28 SH2471 2471 Phe5 3' flank 29.8675 86.302302 58.084901 1.764063253 -0.013156 162 29 SH18964 18964 YOL127W_15_80347_81189_INTRON_14_427 intron/exon 31.795824 111.156907 31.795824 80.361083 56.0784535 1.748796028 0.18092 162 30 SH4736 4736 snR4 3' 29.844404 80.037579 54.9409915 1.739896493 0.082862 162 31 SH10670 10670 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 236 253 34.983841 93.084087 64.033964 1.806410388 0.034099 162 32 SH3188 3188 Ser5 tRNA 61 76 173.839072 265.882129 219.8606005 2.34214741 -0.180402 162 33 SH17241 17241 YHR079C-A_8_262554_262193_INTRON_114_199 intron 28.827977 111.656885 28.827977 83.828908 56.3284425 1.750727743 -0.028765 162 34 SH17185 17185 YHR021C_8_148660_147862_INTRON_4_553 intron 26.155238 106.939469 26.155238 81.784231 53.9697345 1.732150282 -0.187366 162 35 SH7843 7843 snoRNA cluster1 snR74 33.936158 131.443821 33.936158 98.507663 66.2219105 1.821001706 -0.106888 162 36 SH2113 2113 Met1 5' flank 28.325128 79.315596 53.820362 1.730946615 -0.00651 162 37 SH14318 14318 MT VAR1 includes 5’ processing site VAR1 25.20163 95.392369 25.20163 71.190739 48.1961845 1.683012658 -0.124523 162 38 SH11488 11488 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4326 4343 47.754621 94.735336 71.2449785 1.85275426 0.258956 162 39 SH17251 17251 YHR097C_8_298611_297387_INTRON_126_249 intron 26.012938 89.220626 26.012938 64.207688 45.110313 1.65427584 0.037888 162 40 SH9502 9502 RUF2 3' 26.991161 84.547556 55.7693585 1.746395649 -0.16136 162 41 SH19163 19163 YPL075W_16_412249_415357_INTRON_9_759 intron 31.707688 136.152697 31.707688 105.445009 68.5763485 1.836174356 -0.30314 162 42 SH9096 9096 snR14 / U4 RNA U4 96 112 27.407403 80.784103 54.095753 1.73316317 -0.086936 162 43 SH3146 3146 Ser4 3' flank 29.34536 81.979113 55.6622365 1.745560652 0.027092 162 44 SH3782 3782 Val4 3' flank 26.681576 82.894967 54.7882715 1.738687599 -0.163332 162 45 SH9170 9170 snR7 U5 RNA U5 121 137 33.609454 93.773233 63.6913435 1.80408041 -0.015136 162 46 SH396 396 Asn1 61-73 61 73 102.96087 196.240999 149.6009345 2.174934306 -0.298971 162 47 SH10701 10701 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 391 408 29.086484 78.710023 53.8982535 1.731574693 0.05114 162 48 SH6770 6770 snR50 snR50 26 42 29.828167 78.337054 54.0826105 1.733057646 0.103338 162 49 SH7508 7508 snR71 3' 28.148417 77.753687 52.951052 1.723874593 0.001611 162 50 SH5952 5952 snR36 snR36 216 232 30.399622 85.798713 58.0991675 1.764169909 0.019533 162 51 SH6540 6540 snR46 191-197 + 3' 191 27.669191 85.293767 56.481479 1.75190606 -0.123411 162 52 SH7358 7358 snR68 snR68 11 28 27.215438 90.032989 58.6242135 1.768077029 -0.208707 162 53 SH21117 21117 YNL096C spliced 27.195863 86.399503 56.797683 1.754330619 -0.168818 162 54 SH16000 16000 YDL137W_4_216158_217074_INTRON_1_332 intron 42.732873 148.443092 42.732873 106.710219 74.721546 1.873445849 -0.077701 162 55 SH20991 20991 YML073C spliced 32.071218 101.867996 66.969607 1.82587775 -0.223314 162 56 SH9428 9428 RUF2 5' - 3 -19 3 30.210312 102.164437 66.1873745 1.820775154 -0.280307 162 57 SH11454 11454 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4156 4171 12271.45133 9560.894608 10916.17297 4.038070409 -0.356782 162 58 SH10335 10335 RUF7 RUF7 286 302 30.22019 90.949943 60.5850665 1.782365589 -0.078587 162 59 SH21939 21939 copy of SH2 32.110113 91.184669 61.647391 1.789914701 -0.001385 162 60 SH20342 20342 YER093C-A spliced 29.857439 90.316779 60.087109 1.778781309 -0.083943 162 61 SH6603 6603 snR47 3' 28.332927 84.108316 56.2206215 1.749895642 -0.064733 162 62 SH6441 6441 snR45 snR45 51 68 26.938982 72.380252 49.659617 1.696003366 -0.012039 162 63 SH19721 19721 Negative Control 29.508801 84.566813 57.037807 1.756162819 0.002098 162 64 SH7084 7084 snR63 5' 29.233204 73.215115 51.2241595 1.709474841 0.133076 162 65 SH21069 21069 YMR225C spliced 28.998586 95.095911 62.0472485 1.792722527 -0.202774 162 66 SH4393 4393 telomerase RNA telomerase 1001 1022 26.616918 75.597088 51.107003 1.708480414 -0.076928 162 67 SH3840 3840 RNaseP RNaseP 166 182 159.051787 209.977241 184.514514 2.266030534 0.105189 162 68 SH6626 6626 snR48 5' 28.621456 74.820651 51.7210535 1.713667362 0.07151 162 69 SH14743 14743 MT ORF11; tRNA Leu; tRNA Gln 5' 33.091692 138.725138 33.091692 106.633446 69.862569 1.844244552 -0.289443 162 70 SH9085 9085 snR14 / U4 RNA U4 41 58 28.638624 77.071101 52.8548625 1.723084947 0.04297 162 71 SH18935 18935 YOL121C_15_92849_92025_INTRON_21_410 intron 28.687741 102.671177 28.687741 74.983436 51.8355885 1.714628034 0.073693 162 72 SH11725 11725 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5511 5526 37.62403 91.970307 64.7971685 1.811556029 0.12073 162 73 SH16403 16403 YER056C-A_5_270183_269421_INTRON_38_434 intron 184.404342 440.313572 184.404342 256.90923 220.656786 2.343717288 -0.051157 162 74 SH4529 4529 U3b (snR17b) U3b 201 217 68.478552 128.516005 98.4972785 1.993424231 0.002682 162 75 SH2171 2171 Met2 5' flank - tRNA3 3 27.668807 76.714601 52.191704 1.717601476 -0.017299 162 76 SH16358 16358 YEL012W_5_131772_132551_INTRON_6_128 5' exon 27.263749 112.913832 27.263749 86.650083 56.956916 1.755546466 -0.16702 162 77 SH445 445 Asp1 tRNA 46 60 35.902267 97.42751 66.6648885 1.823897157 -0.03636 162 78 SH15558 15558 YBR082C_2_407127_406586_INTRON_48_142 intron 27.331128 92.189146 27.331128 65.858018 46.594573 1.668335336 0.106408 162 79 SH12290 12290 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.481349 111.962397 29.481349 83.481048 56.4811985 1.751903904 0.017626 162 80 SH17812 17812 YKR057W_11_551293_551878_INTRON_25_346 intron 31.757377 112.942521 31.757377 82.185144 56.9712605 1.755655828 0.14458 162 81 SH16375 16375 YER003C_5_159117_157735_INTRON_32_124 intron 27.796878 111.428902 27.796878 84.632024 56.214451 1.749847974 -0.106938 162 82 SH979 979 Gly1 3' flank 27.845418 85.197528 56.521473 1.752213471 -0.110318 162 83 SH18725 18725 YNL147W_14_350937_351380_INTRON_19_138 exon/intron 31.459 121.322218 31.459 90.863218 61.161109 1.786475352 -0.023341 162 84 SH17085 17085 YHL001W_8_104270_105084_INTRON_130_527 intron 45.81693 155.634211 45.81693 110.817281 78.3171055 1.893856628 -0.094046 162 85 SH1768 1768 Leu7 3' flank 26.580009 87.696917 57.138463 1.756928554 -0.226899 162 86 SH9812 9812 RUF4 3' 29.114674 95.702062 62.408368 1.795242826 -0.207256 162 87 SH15438 15438 YBL072C_2_89435_88518_INTRON_1_308 intron 27.297491 99.073773 27.297491 72.776282 50.0368865 1.699290278 0.008185 162 88 SH1800 1800 Leu8 tRNA-exon/intron 26 41 53.814142 131.543329 92.6787355 1.9669801 -0.282386 162 89 SH7541 7541 snR79 snR79 46 62 30.280825 80.865209 55.573017 1.744863975 0.099915 162 90 SH13168 13168 MT COX1 intronic 28.044088 92.637356 28.044088 65.593268 46.818678 1.670419147 0.159866 162 91 SH13938 13938 MT COB Cytbi3 27.627401 117.302616 27.627401 90.675215 59.151308 1.771964353 -0.193966 162 92 SH11941 11941 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6591 6608 33.527123 102.462898 67.9950105 1.832477045 -0.197192 162 93 SH13304 13304 MT COX1 COX1-ai5a 28.743348 118.242472 28.743348 90.499124 59.621236 1.775400975 -0.13796 162 94 SH10471 10471 RUF8 RUF8 281 298 28.358127 90.480432 59.4192795 1.773927381 -0.1557 162 95 SH2179 2179 Met2 tRNA 26 40 37.117682 107.573414 72.345548 1.859411811 -0.213083 162 96 SH9611 9611 RUF3 3' 27.204056 85.781158 56.492607 1.751991617 -0.161059 162 97 SH11281 11281 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3291 3309 49.013661 102.916887 75.965274 1.880615109 0.113541 162 98 SH9149 9149 snR7 U5 RNA U5 16 30 859.038857 878.702104 868.8704805 2.938955043 -0.065044 162 99 SH15369 15369 YBL027W_2_168385_169338_INTRON_3_386 intron 34.131611 142.972701 34.131611 109.84109 71.9863505 1.857250157 -0.325116 162 100 SH12146 12146 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7616 7634 30.547229 99.308331 64.92778 1.812430554 -0.21325 162 101 SH3233 3233 Thr1 tRNA 21 33 29.619268 86.173956 57.896612 1.76265315 -0.022024 162 102 SH16047 16047 YDL191W_4_117665_118518_INTRON_4_494 intron 26.370787 96.270121 26.370787 70.899334 48.6350605 1.68694946 -0.033256 162 103 SH4521 4521 U3b (snR17b) U3b 161 177 28.473573 83.621944 56.0477585 1.748558249 -0.049597 162 104 SH17769 17769 YKL180W_11_109271_110131_INTRON_310_615 exon/intron 45.607527 151.268409 45.607527 106.660882 76.1342045 1.881579814 -0.020963 163 2 SH13466 13466 MT COX1 intronic 25.545203 88.10142 25.545203 63.556217 44.55071 1.64885463 0.014337 163 3 SH306 306 Arg4 3' flank 28.068864 86.588908 57.328886 1.758373503 -0.111478 163 4 SH403 403 Asn1 3' flank 30.34132 73.485624 51.913472 1.715280076 0.199485 163 5 SH8981 8981 snR17a / U3a U3a 191 207 27.864798 68.554753 48.2097755 1.683135109 0.10514 163 6 SH19196 19196 YPL081W_16_404945_406039_INTRON_8_508 intron 27.266043 101.422229 27.266043 75.156186 51.2111145 1.709364227 -0.024913 163 7 SH18275 18275 YML056C_13_164176_162194_INTRON_461_868 intron 41.536733 138.318879 41.536733 97.782146 69.6594395 1.842979976 0.076305 163 8 SH19314 19314 YPL198W_16_173151_174701_INTRON_12_420 intron 34.62717 134.702741 34.62717 101.075571 67.8513705 1.831558624 -0.141916 163 9 SH8966 8966 snR17a / U3a U3a 116 138 28.105833 74.711765 51.408799 1.711037458 0.038715 163 10 SH15410 15410 YBL059C-A_2_110500_110086_INTRON_35_119 intron 25.766816 85.649413 25.766816 60.882597 43.3247065 1.636735629 0.074157 163 11 SH20100 20100 YDL029W spliced 33.874111 92.267472 63.0707915 1.799828281 0.02444 163 12 SH4907 4907 snR9 5' 27.676398 59.979267 43.8278325 1.641749993 0.22298 163 13 SH8552 8552 snR19 / U1 RNA U1 256 270 33.829724 104.086558 68.958141 1.838585545 -0.221439 163 14 SH14189 14189 MT COB Exon6 25.304066 78.899959 25.304066 54.595893 39.9499795 1.601516561 0.155002 163 15 SH1578 1578 Leu4 tRNA-intron/exon 61 76 50.179456 91.361461 70.7704585 1.849852009 0.37496 163 16 SH14297 14297 MT VAR1 includes 5’ processing site VAR1 26.042629 95.240878 26.042629 70.198249 48.120439 1.682329581 -0.047835 163 17 SH7568 7568 snR189 5' 26.710678 62.723049 44.7168635 1.650471334 0.111138 163 18 SH3765 3765 Val4 tRNA 51 65 26.996064 78.600212 52.798138 1.722618607 -0.087989 163 19 SH18078 18078 YLR344W_12_819312_820142_INTRON_20_466 intron 24.984564 90.35042 24.984564 66.365856 45.67521 1.659680553 -0.071102 163 20 SH19315 19315 YPL198W_16_173151_174701_INTRON_12_420 intron 43.060437 140.103008 43.060437 98.042571 70.551504 1.848506276 0.100671 163 21 SH20606 20606 YHR077C spliced 54.829058 116.038226 85.433642 1.931628921 -0.021787 163 22 SH13045 13045 MT COX1 COX1ai2 29.02772 103.795569 29.02772 75.767849 52.3977845 1.719312924 0.085472 163 23 SH3915 3915 RNase MRP 5' - 8 8 29.219621 80.834113 55.026867 1.740574787 0.033084 163 24 SH8806 8806 LSR1 / U2 RNA U2 671 689 29.082603 74.917095 51.999849 1.716002083 0.100337 163 25 SH11671 11671 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5241 5258 16473.0492 9210.018757 12841.53398 4.108616905 0.086341 163 26 SH17774 17774 YKL180W_11_109271_110131_INTRON_310_615 intron 28.894147 102.745802 28.894147 74.851655 51.872901 1.714940537 0.088962 163 27 SH17219 17219 YHR041C_8_189855_189122_INTRON_15_115 intron 33.113401 124.418621 33.113401 92.30522 62.7093105 1.797332026 0.004196 163 28 SH4515 4515 U3b (snR17b) U3b 131 148 32.597614 92.128376 62.362995 1.794926964 -0.005328 163 29 SH7323 7323 snR66 3' 30.052799 73.910901 51.98185 1.715851732 0.175705 163 30 SH11451 11451 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4141 4158 3436.878833 2578.927012 3007.902923 3.478263816 0.060122 163 31 SH8053 8053 snoRNA cluster 2 intergenic 25.967855 98.668446 25.967855 73.700591 49.834223 1.697527691 -0.100092 163 32 SH19268 19268 YPL143W_16_282121_282969_INTRON_20_544 intron 37.735282 123.036073 37.735282 86.300791 62.0180365 1.792518012 0.252459 163 33 SH2132 2132 Met1 tRNA 46 60 28.854575 80.368594 54.6115845 1.737284777 0.015178 163 34 SH18283 18283 YML067C_13_140214_139063_INTRON_32_124 exon/intron 28.730049 104.634599 28.730049 76.90455 52.8172995 1.722776192 0.051141 163 35 SH20021 20021 YBR089C-A spliced 28.082761 85.429622 56.7561915 1.754013245 -0.09705 163 36 SH14119 14119 MT COB intronic 27.078688 113.543806 27.078688 87.465118 57.271903 1.757941614 -0.189227 163 37 SH11030 11030 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2036 2049 26884.941 14261.5628 20573.2519 4.313302944 0.03464 163 38 SH10903 10903 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1401 1421 4943.923543 4164.378999 4554.151271 3.658407452 -0.225454 163 39 SH13455 13455 MT COX1 intronic 28.962531 104.951662 28.962531 76.989131 52.975831 1.724077778 0.065226 163 40 SH20772 20772 YKL002W spliced 27.358667 88.123156 57.7409115 1.761483635 -0.17735 163 41 SH706 706 Gln3 61-72 + 3' flank 61 3' flank 44.759757 90.650323 67.70504 1.830620999 0.293999 163 42 SH9744 9744 RUF4 RUF4 496 510 31.146343 79.826476 55.4864095 1.744186623 0.163624 163 43 SH12772 12772 MT COX1 COX1ai1 28.735929 115.441546 28.735929 87.705617 58.220773 1.765077967 -0.089802 163 44 SH8993 8993 snR17a / U3a U3a 251 266 30.507149 78.920746 54.7139475 1.738098049 0.138314 163 45 SH13751 13751 MT COB Exon1 26.139963 94.097161 26.139963 68.957198 47.5485805 1.677137556 -0.023534 163 46 SH2350 2350 Phe3 76-91 + 3' flank 76 32.671459 92.26596 62.4687095 1.795662534 -0.006424 163 47 SH1353 1353 Ile3 3' flank 28.089178 72.280295 50.1847365 1.700571648 0.069805 163 48 SH17387 17387 YIL069C_9_232366_231550_INTRON_4_412 intron 31.973889 127.404622 31.973889 96.430733 64.202311 1.807550661 -0.114524 163 49 SH20136 20136 YDL083C spliced 27.924615 88.674737 58.299676 1.765666141 -0.145133 163 50 SH11793 11793 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5851 5868 462.705381 394.997033 428.851207 2.632306637 0.408735 163 51 SH15166 15166 MT tRNA Val tRNA / 3' 27.611036 103.367392 27.611036 76.756356 52.183696 1.717534836 -0.021782 163 52 SH12317 12317 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 49.11654 141.978751 49.11654 93.862211 71.4893755 1.854241503 0.301838 163 53 SH4834 4834 snR8 5' 27.128369 74.18002 50.6541945 1.704615414 -0.022116 163 54 SH13459 13459 MT COX1 intronic 29.530078 118.455473 29.530078 89.925395 59.7277365 1.776176057 -0.091981 163 55 SH6937 6937 snR58 snR58 46 62 32.233348 90.010563 61.1219555 1.78619724 0.02379 163 56 SH16414 16414 YER056C-A_5_270183_269421_INTRON_38_434 intron 28.335526 97.849001 28.335526 70.513475 49.4245005 1.693942289 0.110369 163 57 SH17247 17247 YHR097C_8_298611_297387_INTRON_126_249 exon/intron 28.463547 112.689365 28.463547 85.225818 56.8446825 1.754689845 -0.069282 163 58 SH20950 20950 YLR448W spliced 32.467677 84.548386 58.5080315 1.767215487 0.13033 163 59 SH14378 14378 MT ORF9 and ORF10 (hypothetical) ORF10 27.293333 98.883062 27.293333 72.589729 49.941531 1.698461852 0.010355 163 60 SH15728 15728 YBR230C_2_680008_679507_INTRON_12_108 5' exon 42.104036 144.736178 42.104036 103.632142 72.868089 1.86253738 -0.03104 163 61 SH509 509 Asp2 3' flank 32.024129 78.073573 55.048851 1.740748259 0.23517 163 62 SH18469 18469 YMR143W_13_551927_552902_INTRON_25_568 intron 28.738758 115.226445 28.738758 87.487687 58.1132225 1.764274959 -0.085821 163 63 SH513 513 Asp2 3' flank 29.086151 82.373484 55.7298175 1.746087621 0.00557 163 64 SH14516 14516 MT 21S rRNA 21S rRNA3 30.961432 101.775646 30.961432 71.814214 51.387823 1.71086022 0.260641 163 65 SH8351 8351 snoRNA cluster4 3' 37.461198 133.193563 37.461198 96.732365 67.0967815 1.826701688 0.0136 163 66 SH5738 5738 snR34 3' 30.773251 82.974039 56.873645 1.754911063 0.087669 163 67 SH17281 17281 YHR141C_8_382752_381991_INTRON_5_445 intron 28.652973 96.669679 28.652973 69.016706 48.8348395 1.688729765 0.152412 163 68 SH15700 15700 YBR220C_2_663261_662457_INTRON_302_722 intron 30.725583 115.654513 30.725583 85.92893 58.3272565 1.765871549 0.031461 163 69 SH5040 5040 snR10 231-245 + 3' 231 28.187516 85.169712 56.678614 1.753419222 -0.086984 163 70 SH2513 2513 Pro1 tRNA 56 68 37.11783 98.775274 67.946552 1.832167423 -0.037083 163 71 SH21587 21587 copy of SH6044 28.279032 84.446877 56.3629545 1.75099375 -0.072343 163 72 SH4470 4470 U3b (snR17b) 5' 28.164283 70.849644 49.5069635 1.69466629 0.094131 163 73 SH3048 3048 Ser3 5' flank 30.116784 98.361074 64.238929 1.807798292 -0.205917 163 74 SH5809 5809 snR35 snR35 231 247 36.547123 97.47626 67.0116915 1.82615058 -0.022526 163 75 SH10248 10248 RUF6 3' 28.368561 83.903671 56.136116 1.749242361 -0.059926 163 76 SH3041 3041 Ser3 5' flank 42.09751 103.786359 72.9419345 1.862977277 -0.034189 163 77 SH2202 2202 Met2 3' flank 26.909952 77.612262 52.261107 1.718178605 -0.081345 163 78 SH3334 3334 Thr3 tRNA 16 30 31.425982 88.783939 60.1049605 1.778910316 0.011065 163 79 SH11459 11459 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4181 4196 1515.164344 1012.338254 1263.751299 3.101661615 0.458968 163 80 SH15899 15899 YDL083C_4_307788_306925_INTRON_25_456 intron 29.275879 121.476841 29.275879 93.200962 61.2384205 1.787023981 -0.158899 163 81 SH9390 9390 RUF1 RUF1 526 545 31.966201 97.145028 64.5556145 1.809934019 -0.129716 163 82 SH13188 13188 MT COX1 Exon4 27.717021 95.396088 27.717021 68.679067 48.198044 1.683029414 0.093161 163 83 SH13445 13445 MT COX1 intronic 33.402225 127.111218 33.402225 94.708993 64.055609 1.806557165 -0.040586 163 84 SH19235 19235 YPL090C_16_378390_377286_INTRON_7_400 intron 28.202827 109.675023 28.202827 82.472196 55.3375115 1.743019625 -0.053737 163 85 SH5010 5010 snR10 snR10 81 97 34.166344 87.698984 60.932664 1.784850166 0.134902 163 86 SH12880 12880 MT COX1 COX1ai1 26.145572 103.212895 26.145572 78.067323 52.1064475 1.716891465 -0.142191 163 87 SH6502 6502 snR46 snR46 1 13 37.39606 82.489966 59.943013 1.777738569 0.33645 163 88 SH13156 13156 MT COX1 intronic 29.440845 105.191082 29.440845 76.750237 53.095541 1.72505805 0.0992 163 89 SH11794 11794 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5856 5873 301.396478 263.798496 282.597487 2.451168296 0.516282 163 90 SH15905 15905 YDL083C_4_307788_306925_INTRON_25_456 intron 175.097742 463.977996 175.097742 289.880254 232.488998 2.366402406 -0.314659 163 91 SH13528 13528 MT COX1 intronic 30.01035 95.256259 30.01035 66.245909 48.1281295 1.682398983 0.280867 163 92 SH7637 7637 snR189 3' 29.699857 80.793375 55.246616 1.742305681 0.064304 163 93 SH1571 1571 Leu4 tRNA-exon/intron 26 42 29.376049 75.593551 52.4848 1.720033547 0.110253 163 94 SH7057 7057 snR62 snR62 76 95 31.134731 100.18638 65.6605555 1.817304553 -0.214842 163 95 SH19509 19509 ACT1 28.563897 86.48985 57.5268735 1.759870771 -0.077391 163 96 SH327 327 Arg5 5' flank 27.976876 69.683566 48.830221 1.68868869 0.097199 163 97 SH8405 8405 snoRNA cluster 5 snR190 27.285782 105.934396 27.285782 79.648614 53.467198 1.728087425 -0.081143 163 98 SH12766 12766 MT COX1 COX1ai1 28.629075 95.378271 28.629075 67.749196 48.1891355 1.682949135 0.168592 163 99 SH1740 1740 Leu7 5' flank - tRNA10 10 76.342768 134.820987 105.5818775 2.023589381 0.027883 163 100 SH10480 10480 RUF8 RUF8 326 342 26.602998 81.040283 53.8216405 1.730956931 -0.146234 163 101 SH19796 19796 Negative Control 31.771418 83.842146 57.806782 1.761978794 0.114292 163 102 SH14623 14623 MT 21S rRNA Sce1 endonuc 28.704498 100.657597 28.704498 72.953099 50.8287985 1.706109844 0.102277 163 103 SH7995 7995 snoRNA cluster 2 intergenic 28.881059 121.111972 28.881059 93.230913 61.055986 1.785728249 -0.177569 163 104 SH5096 5096 snR11 snR11 81 97 28.355102 78.829958 53.59253 1.72910426 0.001632 164 2 SH2230 2230 Phe1 tRNA-exon/intron 26 42 33.469578 91.597757 62.5336675 1.7961139 0.028964 164 3 SH14744 14744 MT ORF11; tRNA Leu; tRNA Gln 5' 31.609143 126.758577 31.609143 96.149434 63.8792885 1.80536007 -0.118398 164 4 SH20188 20188 YDL219W spliced 27.594123 69.504763 48.549443 1.686184252 0.073135 164 5 SH21443 21443 TH299 - control cDNA - flipped; WTP_225 30.98894 95.830865 63.4099025 1.802157085 -0.128596 164 6 SH18010 18010 YLR287C-A_12_713158_712537_INTRON_4_433 intron 25.383456 90.067548 25.383456 65.684092 45.533774 1.658333648 -0.031002 164 7 SH7465 7465 snR71 5' 28.100178 70.69915 49.399664 1.693723995 0.091783 164 8 SH3670 3670 Val2 3' flank 26.401172 82.97669 54.688931 1.737899434 -0.184225 164 9 SH18655 18655 YNL112W_14_413636_416278_INTRON_1274_2275 intron 31.833626 112.207254 31.833626 81.373628 56.603627 1.75284426 0.163141 164 10 SH18855 18855 YNR053C_14_723108_721117_INTRON_811_1341 intron 27.067496 118.740816 27.067496 92.67332 59.870408 1.777212218 -0.255088 164 11 SH1605 1605 Leu4 3' flank 36.91198 89.858866 63.385423 1.801989393 0.151562 164 12 SH12474 12474 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 46615.30014 59357.52373 46615.30014 12743.22358 29679.26186 4.472453096 0.931302 164 13 SH2509 2509 Pro1 tRNA 36 48 170.33019 199.09246 184.711325 2.266493524 0.277131 164 14 SH17152 17152 YHR012W_8_129473_130440_INTRON_49_167 intron 35.411008 118.634724 35.411008 84.223716 59.817362 1.776827256 0.247593 164 15 SH14604 14604 MT 21S rRNA Sce1 endonuc 31.470733 114.186199 31.470733 83.715466 57.5930995 1.760370452 0.103904 164 16 SH15591 15591 YBR084C-A_2_415219_414144_INTRON_3_508 3' exon 34.297722 116.657114 34.297722 83.359392 58.828557 1.769588196 0.22563 164 17 SH681 681 Gln3 5' flank 26.784452 65.042346 45.913399 1.661939445 0.079457 164 18 SH6566 6566 snR47 5' 38.329915 85.729139 62.029527 1.79259847 0.279319 164 19 SH5919 5919 snR36 snR36 51 70 27.655382 62.914364 45.284873 1.655953154 0.173009 164 20 SH871 871 Glu2 3' flank 27.895435 78.768507 53.331971 1.726987634 -0.028382 164 21 SH4770 4770 snR5 snR5 21 35 30.382387 83.596391 56.989389 1.755794001 0.059001 164 22 SH14480 14480 MT 21S rRNA 21S rRNA3 28.163159 99.508629 28.163159 72.34547 50.2543145 1.701173353 0.074006 164 23 SH14207 14207 MT ATP9 5' 25.739451 98.677091 25.739451 73.93764 49.8385455 1.697565359 -0.120187 164 24 SH14867 14867 MT tRNA Ser2; tRNA Arg2 3' 27.870214 103.774869 27.870214 76.904655 52.3874345 1.719227131 -0.006111 164 25 SH9070 9070 snR14 / U4 RNA 5' 30.487046 78.604824 54.545935 1.736762391 0.141088 164 26 SH15183 15183 MT COX3 cox3 26.472186 101.395888 26.472186 75.923702 51.197944 1.709252521 -0.091565 164 27 SH15233 15233 MT COX3 3' 26.557707 96.586072 26.557707 71.028365 48.793036 1.688357842 -0.021398 164 28 SH21849 21849 copy of SH17599 30.778157 87.553875 59.166016 1.772072327 0.004769 164 29 SH1166 1166 His1 tRNA 51 66 318.92941 405.253489 362.0914495 2.558818269 -0.10698 164 30 SH14676 14676 MT 21S rRNA 21S rRNA4 29.995091 112.634875 29.995091 83.639784 56.8174375 1.754481643 0.041027 164 31 SH1649 1649 Leu5 111-115 + 3' flank 111 27.874865 84.283125 56.078995 1.748800222 -0.097523 164 32 SH12802 12802 MT COX1 COX1ai1 26.038451 97.12894 26.038451 72.090489 49.06447 1.690767112 -0.073667 164 33 SH7490 7490 snR71 snR71 66 85 28.609762 92.586518 60.59814 1.782459294 -0.179471 164 34 SH4882 4882 snR8 3' 28.611596 73.993812 51.302704 1.710140256 0.081987 164 35 SH5514 5514 snR32 3' 29.202016 74.138301 51.6701585 1.713239794 0.11852 164 36 SH14426 14426 MT 21S rRNA 21S rRNA3 29.479641 112.667532 29.479641 84.187891 56.833766 1.754606435 0.007722 164 37 SH16503 16503 YER117W_5_396765_397649_INTRON_43_513 intron 56.203795 156.416922 56.203795 101.213127 78.708461 1.896021421 0.269054 164 38 SH2754 2754 Pro5 3' flank 33.674466 86.879912 60.277189 1.780152991 0.137093 164 39 SH2750 2750 Pro5 3' flank 27.831562 87.660785 57.7461735 1.761523211 -0.139793 164 40 SH6894 6894 snR56 3' 25.851056 68.415495 47.1332755 1.673327622 -0.037369 164 41 SH4551 4551 U3b (snR17b) U3b 311 330 27.497699 76.570798 52.0342485 1.716289287 -0.027109 164 42 SH3136 3136 Ser4 tRNA 86 101 5507.192071 7514.59773 6510.894901 3.813640685 -1.019723 164 43 SH7820 7820 snoRNA cluster1 intergenic 28.289698 98.385953 28.289698 71.096255 49.6929765 1.696295011 0.099353 164 44 SH12442 12442 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.324927 121.878978 36.324927 86.554051 61.439489 1.788447595 0.213951 164 45 SH11110 11110 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2436 2454 25.944472 79.625505 52.7849885 1.722510431 -0.176025 164 46 SH21592 21592 copy of SH6253 38.945955 108.144924 73.5454395 1.866555748 -0.184322 164 47 SH18584 18584 YNL050C_14_534978_534075_INTRON_18_108 5' exon 27.058085 102.958601 27.058085 76.900516 51.9793005 1.715830431 -0.061777 164 48 SH8049 8049 snoRNA cluster 2 intergenic 27.624314 116.525618 27.624314 89.901304 58.762809 1.769102548 -0.180856 164 49 SH4693 4693 snR4 snR4 1 18 41.230199 97.000022 69.1151105 1.839573007 0.086775 164 50 SH20965 20965 YML026C spliced 27.874869 76.675273 52.275071 1.718294631 -0.002805 164 51 SH9286 9286 RUF1 RUF1 6 22 27.533406 89.045344 58.289375 1.765589399 -0.175777 164 52 SH13082 13082 MT COX1 COX1ai3 24.967634 104.658403 24.967634 80.690769 52.8292015 1.722874046 -0.262686 164 53 SH17000 17000 YGR118W_7_726968_727725_INTRON_66_385 intron 27.087468 98.359884 27.087468 72.272416 49.679942 1.69618108 -0.000022 164 54 SH2370 2370 Phe4 5' flank 27.565337 69.755236 48.6602865 1.687174662 0.067673 164 55 SH19994 19994 YBR048W spliced 28.267564 93.258669 60.7631165 1.78364004 -0.206766 164 56 SH18599 18599 YNL069C_14_494998_493953_INTRON_29_477 intron 28.847487 115.020025 28.847487 87.172538 58.0100125 1.763502959 -0.075184 164 57 SH10278 10278 RUF7 RUF7 1 18 31.184769 91.938746 61.5617575 1.78931101 -0.053263 164 58 SH18348 18348 YML124C_13_23684_22049_INTRON_26_323 intron 28.350508 109.729011 28.350508 82.378503 55.3645055 1.743231425 -0.042759 164 59 SH565 565 Cys1 3' flank 27.505937 79.217399 53.361668 1.727229396 -0.060566 164 60 SH1211 1211 Ile1 tRNA 16 30 42.290826 104.939881 73.6153535 1.866968402 -0.052682 164 61 SH9687 9687 RUF4 RUF4 211 227 32.06696 79.935632 56.001296 1.748198078 0.200497 164 62 SH18468 18468 YMR143W_13_551927_552902_INTRON_25_568 intron 28.596276 105.748938 28.596276 78.152662 53.374469 1.727333567 0.026229 164 63 SH7166 7166 snR63 3' 26.500105 86.168341 56.334223 1.750772309 -0.214966 164 64 SH7680 7680 snoRNA cluster1 intergenic 30.465887 123.159136 30.465887 93.693249 62.079568 1.792948686 -0.113721 164 65 SH2818 2818 Pro6 3' flank 28.025112 95.388717 61.7069145 1.790333831 -0.253231 164 66 SH2530 2530 Pro1 3' flank 31.698758 101.145125 66.4219415 1.822311566 -0.218837 164 67 SH2584 2584 Pro2 3' flank 28.705992 75.927169 52.3165805 1.71863935 0.062369 164 68 SH18231 18231 YML026C_13_223828_222987_INTRON_48_448 intron 28.636137 101.918684 28.636137 74.282547 51.459342 1.711464229 0.079703 164 69 SH4141 4141 SRP RNA SRP RNA 596 610 37.337064 95.371293 66.3541785 1.821868277 0.040098 164 70 SH15860 15860 YDL079C_4_314747_312950_INTRON_413_704 intron 32.695642 128.326737 32.695642 96.631095 64.6633685 1.810658325 -0.09966 164 71 SH13915 13915 MT COB Cytbi3 26.082755 104.807315 26.082755 79.72456 52.9036575 1.723485698 -0.167057 164 72 SH7000 7000 snR60 snR60 81 97 30.442739 82.896427 56.669583 1.753350017 0.074664 164 73 SH17327 17327 YIL004C_9_348502_347943_INTRON_12_142 intron 30.331421 110.65819 30.331421 81.326769 55.829095 1.746860588 0.097362 164 74 SH5379 5379 snR31 5' 27.960918 68.7881 48.374509 1.68461657 0.108511 164 75 SH12916 12916 MT COX1 COX1ai2 29.752702 117.043269 29.752702 88.290567 59.0216345 1.771011232 -0.053546 164 76 SH8474 8474 snoRNA cluster 5 3' 29.308758 105.781166 29.308758 77.472408 53.390583 1.727464663 0.081351 164 77 SH4651 4651 snR3 snR3 171 186 35.784268 116.872729 76.3284985 1.882686719 -0.414201 164 78 SH15351 15351 YBL026W_2_170585_171000_INTRON_55_182 5' exon 27.305232 89.322049 27.305232 63.016817 45.1610245 1.654763786 0.147539 164 79 SH8089 8089 snoRNA cluster 2 3' 29.331756 111.303982 29.331756 82.972226 56.151991 1.74936516 0.014162 164 80 SH6543 6543 snR46 3' 44.747058 107.06546 75.906259 1.880277588 -0.044967 164 81 SH2137 2137 Met1 71-73 + 3' flank 71 29.894182 81.880519 55.8873505 1.747313521 0.063209 164 82 SH14317 14317 MT VAR1 includes 5’ processing site VAR1 26.95406 95.027781 26.95406 69.073721 48.0138905 1.681366898 0.033908 164 83 SH17359 17359 YIL052C_9_257061_256224_INTRON_38_509 intron 27.443617 122.409088 27.443617 95.965471 61.704544 1.790317147 -0.29062 164 84 SH7391 7391 snR68 3' 39.088584 102.842446 70.965515 1.851047359 -0.077749 164 85 SH1981 1981 Lys2 3' flank 27.78975 86.90299 57.34637 1.758505932 -0.133933 164 86 SH12248 12248 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.245718 127.460161 37.245718 91.214443 64.2300805 1.807738466 0.128851 164 87 SH12046 12046 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7116 7131 32.692463 84.433492 58.5629775 1.767623149 0.141668 164 88 SH19172 19172 YPL079W_16_406631_407534_INTRON_12_432 intron 27.059953 117.616291 27.059953 91.556338 59.3081455 1.773114344 -0.236703 164 89 SH7674 7674 snoRNA cluster1 snR78 29.711762 101.447334 29.711762 72.735572 51.223667 1.709470666 0.170251 164 90 SH1098 1098 Gly4 5' flank 29.860803 88.360933 59.110868 1.771667337 -0.049924 164 91 SH7263 7263 snR65 91-100 + 3' 91 29.909388 108.005037 68.9572125 1.838579697 -0.401756 164 92 SH8754 8754 LSR1 / U2 RNA U2 411 430 29.903082 70.158769 50.0309255 1.699238537 0.218458 164 93 SH15869 15869 YDL079C_4_314747_312950_INTRON_413_704 intron 27.577317 97.95434 27.577317 71.377023 49.47717 1.694404851 0.046455 164 94 SH1208 1208 Ile1 tRNA 1 13 31.576585 79.487233 55.531909 1.744542603 0.188574 164 95 SH14092 14092 MT COB Cytbi4 29.063483 103.36129 29.063483 75.297807 52.180645 1.717509443 0.094022 164 96 SH13576 13576 MT COX1 Exon 6 27.6179 112.281301 27.6179 85.663401 56.6406505 1.753128232 -0.131237 164 97 SH11372 11372 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3746 3766 30.181026 95.59628 62.888653 1.798572293 -0.1574 164 98 SH4637 4637 snR3 snR3 101 117 35.55393 90.941779 63.2478545 1.801045798 0.095197 164 99 SH12414 12414 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.660713 108.28233 28.660713 80.621617 54.641165 1.73751995 -0.00067 164 100 SH21327 21327 YPR043W spliced 46.892848 106.377924 76.635386 1.884429349 0.008245 164 101 SH10842 10842 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1096 1119 29.781056 88.931151 59.3561035 1.773465383 -0.063454 164 102 SH17887 17887 YLR048W_12_242233_243350_INTRON_91_449 intron 26.781502 106.139648 26.781502 80.358146 53.569824 1.72892022 -0.12517 164 103 SH21924 21924 copy of SH20399 29.210815 101.160759 65.185787 1.814152913 -0.289015 164 104 SH8042 8042 snoRNA cluster 2 intergenic 28.79047 99.825978 28.79047 72.035508 50.412989 1.702542448 0.120551 165 2 SH18582 18582 YNL044W_14_545264_545873_INTRON_25_103 3' exon 29.799568 117.964726 29.799568 89.165158 59.482363 1.774388213 -0.066688 165 3 SH585 585 Gln1 5' flank 26.234796 78.91382 52.574308 1.720773565 -0.145979 165 4 SH7791 7791 snoRNA cluster1 snR75 30.949588 103.214164 30.949588 73.264576 52.107082 1.716896753 0.239901 165 5 SH4296 4296 telomerase RNA telomerase 516 530 29.214275 77.559169 53.386722 1.727433256 0.074147 165 6 SH13575 13575 MT COX1 Exon 6 27.246013 110.408882 27.246013 84.162869 55.704441 1.74588982 -0.139087 165 7 SH15346 15346 YBL018C_2_186436_185960_INTRON_48_122 intron 27.089534 96.76113 27.089534 70.671596 48.880565 1.689136217 0.021618 165 8 SH4895 4895 snR8 3' 26.508464 81.980349 54.2444065 1.734354962 -0.164488 165 9 SH188 188 Arg2 56-68 56 68 42.176651 104.470436 73.3235435 1.865243445 -0.045905 165 10 SH3603 3603 Val1 tRNA 11 26 174.326832 272.84407 223.585451 2.34944354 -0.219925 165 11 SH19804 19804 Negative Control 30.484678 89.163024 59.823851 1.776874366 -0.036228 165 12 SH1521 1521 Leu3 tRNA 76 92 830.888774 820.764354 825.826564 2.916888849 -0.00114 165 13 SH8341 8341 snoRNA cluster4 snR53 27.633778 109.410356 27.633778 82.776578 55.205178 1.741979815 -0.095831 165 14 SH5802 5802 snR35 snR35 196 215 30.063984 98.277522 64.170753 1.807337135 -0.205691 165 15 SH15705 15705 YBR220C_2_663261_662457_INTRON_302_722 intron 25.980025 96.473417 25.980025 71.493392 48.7367085 1.687856195 -0.070012 165 16 SH7017 7017 snR60 3' 32.398039 101.466458 66.9322485 1.825635415 -0.206628 165 17 SH17847 17847 YKR094C_11_618384_617630_INTRON_9_376 intron 26.586591 106.633119 26.586591 81.046528 53.8165595 1.73091593 -0.147473 165 18 SH6506 6506 snR46 snR46 21 39 27.176112 71.892106 49.534109 1.694904355 0.011332 165 19 SH1697 1697 Leu6 tRNA 51 63 2250.135937 3127.50018 2688.818059 3.429561416 -0.796947 165 20 SH13615 13615 MT ATP6 5' 25.717054 101.729236 25.717054 77.012182 51.364618 1.710664063 -0.160958 165 21 SH11020 11020 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1986 2001 2421.701596 1573.754567 1997.728082 3.300536374 0.383879 165 22 SH11057 11057 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2171 2188 1634.934619 1269.045837 1451.990228 3.161963694 0.205657 165 23 SH12090 12090 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7336 7351 44.683387 114.32609 79.5047385 1.900393013 -0.178524 165 24 SH18603 18603 YNL069C_14_494998_493953_INTRON_29_477 intron 46.909155 146.418198 46.909155 100.509043 73.709099 1.867521103 0.12365 165 25 SH8602 8602 snR19 / U1 RNA U1 506 525 29.840915 79.696507 54.768711 1.73853252 0.086917 165 26 SH10694 10694 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 356 373 50.944362 115.258517 83.1014395 1.919608547 -0.077589 165 27 SH7627 7627 snR189 3' 28.753954 72.955103 50.8545285 1.706329632 0.105493 165 28 SH2207 2207 Phe1 5' flank 28.568635 68.027783 48.298209 1.683931026 0.160584 165 29 SH14319 14319 MT VAR1 includes 5’ processing site VAR1 26.727722 98.242565 26.727722 72.514843 49.6212825 1.695667985 -0.028984 165 30 SH791 791 Glu1 5' flank 27.013281 78.438505 52.725893 1.722023944 -0.084726 165 31 SH12099 12099 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7381 7398 29.091998 81.556505 55.3242515 1.742915547 0.015928 165 32 SH6491 6491 snR46 5' 29.760349 84.990476 57.3754125 1.758725821 0.005729 165 33 SH75 75 Ala2 11-23 11 23 34.860754 91.588103 63.2244285 1.800884912 0.063987 165 34 SH9711 9711 RUF4 RUF4 331 347 28.27451 66.792878 47.533694 1.677001566 0.158234 165 35 SH5411 5411 snR31 snR31 121 137 29.980924 90.54726 60.264092 1.780058617 -0.082362 165 36 SH3504 3504 Tyr1 tRNA 61 73 36.934702 89.76652 63.350611 1.801750808 0.154176 165 37 SH2194 2194 Met2 3' flank 29.202107 79.01527 54.1086885 1.733267008 0.054739 165 38 SH20228 20228 YDR129C spliced 29.814072 80.236799 55.0254355 1.740563488 0.078457 165 39 SH19545 19545 CBP1 2.2 28.297991 86.774393 57.536192 1.759941115 -0.098302 165 40 SH2086 2086 Lys4 96 + 3' flank 96 117 28.447194 79.579357 54.0132755 1.732500515 -0.001732 165 41 SH6680 6680 snR49 5' 27.802115 72.18362 49.9928675 1.698908048 0.051307 165 42 SH15243 15243 MT tRNA fMet 5' / tRNA 33.233797 122.946057 33.233797 90.71226 61.9730285 1.79220272 0.042648 165 43 SH3683 3683 Val2 3' flank 29.326643 81.810298 55.5684705 1.744828443 0.027953 165 44 SH17459 17459 YIL148W_9_68708_69528_INTRON_9_442 intron 38.510145 134.891974 38.510145 97.381829 67.945987 1.832163812 0.022519 165 45 SH8233 8233 snoRNA cluster 3; 3' 30.186348 106.996034 30.186348 77.809686 53.998017 1.732377811 0.132592 165 46 SH16317 16317 YDR471W_4_1401759_1402553_INTRON_32_415 intron 32.730952 121.271138 32.730952 89.540186 61.135569 1.786293959 0.052399 165 47 SH11079 11079 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2281 2296 27.201782 80.396534 53.799158 1.730775479 -0.09631 165 48 SH18600 18600 YNL069C_14_494998_493953_INTRON_29_477 intron 27.837342 106.49932 27.837342 79.661978 53.74966 1.730375721 -0.043603 165 49 SH12601 12601 MT_15S MT_15S 30.284588 119.283382 30.284588 89.998794 60.141691 1.779175635 -0.059475 165 50 SH9490 9490 RUF2 3' 30.18213 75.736885 52.9595075 1.723943938 0.159362 165 51 SH18581 18581 YNL044W_14_545264_545873_INTRON_25_103 3' exon 27.406394 100.722203 27.406394 74.315809 50.8611015 1.706385761 -0.004235 165 52 SH960 960 Gly1 tRNA 51 63 37.414176 90.390527 63.9023515 1.80551684 0.151134 165 53 SH3201 3201 Ser5 3' flank 28.921684 86.712443 57.8170635 1.76205603 -0.06356 165 54 SH16134 16134 YDR064W_4_579453_580447_INTRON_22_560 3' exon 40.832915 126.056427 40.832915 86.223512 63.5282135 1.802966643 0.32171 165 55 SH12815 12815 MT COX1 COX1ai1 28.570206 108.668551 28.570206 81.098345 54.8342755 1.73905211 -0.012533 165 56 SH17510 17510 YJL136C_10_156971_156248_INTRON_25_484 intron 29.246847 105.130472 29.246847 76.883625 53.065236 1.7248101 0.085005 165 57 SH14139 14139 MT COB intronic 29.289263 108.318424 29.289263 80.029161 54.659212 1.737663366 0.047589 165 58 SH16129 16129 YDR064W_4_579453_580447_INTRON_22_560 intron 28.790689 104.819641 28.790689 77.028952 52.9098205 1.723536288 0.053496 165 59 SH11188 11188 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2826 2844 30.375122 75.308893 52.8420075 1.722979308 0.177045 165 60 SH5284 5284 snR30 snR30 271 288 27.95113 79.724338 53.837734 1.731086772 -0.036701 165 61 SH18287 18287 YML067C_13_140214_139063_INTRON_32_124 intron 27.230745 101.98942 27.230745 75.758675 51.49471 1.711762617 -0.035069 165 62 SH7155 7155 snR63 3' 28.747519 79.08412 53.9158195 1.731716211 0.024306 165 63 SH14316 14316 MT VAR1 includes 5’ processing site VAR1 26.313103 91.235709 26.313103 65.922606 46.1178545 1.663869095 0.032547 165 64 SH958 958 Gly1 tRNA 41 53 41.33685 98.693976 70.015413 1.845193655 0.053191 165 65 SH21755 21755 copy of SH13180 30.014249 84.829015 57.421632 1.759075532 0.020041 165 66 SH10490 10490 RUF8 RUF8 376 393 28.233858 77.75182 52.992839 1.724217187 0.007346 165 67 SH8064 8064 snoRNA cluster 2 snR61 28.691313 110.867425 28.691313 83.176112 55.9337125 1.747673646 -0.029891 165 68 SH6074 6074 snR37 snR37 286 302 28.816287 79.837408 54.3268475 1.735014504 0.019316 165 69 SH21767 21767 copy of SH13602 26.470735 65.659918 46.0653265 1.663374154 0.047769 165 70 SH10107 10107 RUF6 RUF6 381 398 28.658512 81.383801 55.0211565 1.740529715 -0.010236 165 71 SH12649 12649 MT_15S MT_15S 28.592079 104.024752 28.592079 76.432673 52.512376 1.720261669 0.048233 165 72 SH11959 11959 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6681 6694 39.82758 87.074746 63.451163 1.802439587 0.280454 165 73 SH6678 6678 snR49 5' 28.476921 85.437709 56.957315 1.755549508 -0.070883 165 74 SH14515 14515 MT 21S rRNA 21S rRNA3 28.375124 111.677472 28.375124 84.302348 56.338736 1.750807099 -0.064236 165 75 SH13016 13016 MT COX1 COX1ai2 27.92339 92.845227 27.92339 65.921837 46.9226135 1.671382193 0.146765 165 76 SH16361 16361 YEL012W_5_131772_132551_INTRON_6_128 intron 27.458928 102.591743 27.458928 76.132815 51.7958715 1.714295145 -0.024024 165 77 SH6783 6783 snR50 3' 29.617888 83.727197 56.6725425 1.753372697 0.022473 165 78 SH5582 5582 snR33 3' 27.652292 71.073183 49.3627375 1.693399236 0.055777 165 79 SH9586 9586 RUF3 RUF3 316 337 27.573571 73.311333 50.442452 1.702796189 0.020535 165 80 SH17549 17549 YJL177W_10_90783_91654_INTRON_310_626 3' exon 31.959354 121.600863 31.959354 90.641509 61.3004315 1.787463532 0.001558 165 81 SH1654 1654 Leu5 3' flank 25.927617 68.884368 47.4059925 1.675833243 -0.038228 165 82 SH3399 3399 Thr4 3' flank 28.527761 65.355883 46.941822 1.671559942 0.196276 165 83 SH18756 18756 YNL162W_14_331319_332151_INTRON_5_516 intron 27.98279 101.026244 27.98279 74.043454 51.013122 1.707681903 0.039371 165 84 SH4456 4456 telomerase RNA 3' 26.852676 75.464958 51.158817 1.708920493 -0.058267 165 85 SH19264 19264 YPL143W_16_282121_282969_INTRON_20_544 intron 28.04108 104.561599 28.04108 77.520519 52.7807995 1.722475964 -0.002581 165 86 SH9626 9626 RUF4 5' 90.173699 128.078808 109.1262535 2.037929245 0.299289 165 87 SH11780 11780 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5786 5803 1804.771702 1286.254716 1545.513209 3.189072721 0.314863 165 88 SH5216 5216 snR30 5' 26.973136 69.471302 48.222219 1.683247191 0.029763 165 89 SH15959 15959 YDL130W_4_229906_230527_INTRON_115_415 intron 29.219599 102.769515 29.219599 74.549916 51.8847575 1.715039791 0.11411 165 90 SH4975 4975 snR10 5' 29.22625 92.758835 60.9925425 1.785276737 -0.153814 165 91 SH15256 15256 MT 9S rRNA 5' 27.244455 88.900438 27.244455 62.655983 44.950219 1.652731812 0.149209 165 92 SH18399 18399 YMR125W_13_517538_520445_INTRON_26_347 intron 29.576118 102.122139 29.576118 73.546021 51.5610695 1.712321917 0.150535 165 93 SH13209 13209 MT COX1 COX1-ai4 27.369258 103.128287 27.369258 76.759029 52.0641435 1.716538728 -0.038389 165 94 SH12822 12822 MT COX1 COX1ai1 27.047817 109.293921 27.047817 83.246104 55.1469605 1.741521581 -0.141877 165 95 SH4778 4778 snR5 snR5 61 78 28.87314 79.02236 53.94775 1.731973336 0.033303 165 96 SH20592 20592 YHR039C-A spliced 28.780297 82.359318 55.5698075 1.744838892 -0.014176 165 97 SH5629 5629 snR34 snR34 66 80 30.763015 85.199582 57.9812985 1.763287937 0.046277 165 98 SH21097 21097 YNL044W spliced 26.117812 73.415517 49.7666645 1.696938534 -0.085284 165 99 SH5591 5591 snR33 3' 27.394121 70.483963 48.939042 1.689655464 0.045701 165 100 SH507 507 Asp2 3' flank 33.205738 75.556735 54.3812365 1.735449078 0.334356 165 101 SH19355 19355 YPL249C-A_16_76239_75699_INTRON_17_254 intron 25.997142 101.68767 25.997142 76.690528 51.343835 1.710488304 -0.136081 165 102 SH5502 5502 snR32 snR32 171 188 29.104071 64.82867 46.9663705 1.671787 0.242565 165 103 SH4554 4554 U3b (snR17b) U3b 326 342 29.195082 79.264106 54.229594 1.734236353 0.051138 165 104 SH21441 21441 TH213 - control oligo; WTP_223 28.478209 84.877686 56.6779475 1.753414115 -0.064214 166 2 SH20763 20763 YJR145C spliced 48.029224 109.688 78.858612 1.896849129 -0.031524 166 3 SH15656 15656 YBR189W_2_604466_605466_INTRON_8_420 intron 28.868688 122.170435 28.868688 94.301747 61.5852175 1.78947648 -0.195809 166 4 SH21044 21044 YMR142C spliced 36.639791 104.685245 70.662518 1.849189109 -0.16761 166 5 SH21826 21826 copy of SH16121 28.616942 84.460226 56.538584 1.752344927 -0.050121 166 6 SH12344 12344 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 41.783944 135.565126 41.783944 94.781182 68.282563 1.834309814 0.145481 166 7 SH20512 20512 YGR029W spliced 31.092599 82.818087 56.955343 1.755534472 0.104397 166 8 SH8044 8044 snoRNA cluster 2 intergenic 26.646383 98.093971 26.646383 72.447588 49.5469855 1.695017237 -0.033963 166 9 SH18791 18791 YNL301C_14_64561_63569_INTRON_113_544 intron 30.232419 119.090996 30.232419 89.858577 60.045498 1.778480451 -0.05937 166 10 SH15753 15753 YCR031C_3_178212_177492_INTRON_8_314 intron 37.916601 140.71238 37.916601 103.795779 70.85619 1.850377796 -0.121827 166 11 SH12821 12821 MT COX1 COX1ai1 33.536152 123.557601 33.536152 91.021449 62.2788005 1.794340239 0.04348 166 12 SH21164 21164 YNL302C spliced 36.088319 89.236867 62.662593 1.797008362 0.146379 166 13 SH15930 15930 YDL108W_4_267697_268698_INTRON_29_109 3' exon 30.501332 113.091808 30.501332 83.590476 57.045904 1.756224467 0.06434 166 14 SH10429 10429 RUF8 RUF8 71 88 26.593967 68.624668 47.6093175 1.677691956 0.014265 166 15 SH8393 8393 snoRNA cluster 5 snR190 28.409813 112.114502 28.409813 84.704689 56.557251 1.752488292 -0.066701 166 16 SH2991 2991 Ser2 5' flank 27.982399 105.768989 66.875694 1.825268302 -0.416196 166 17 SH17700 17700 YKL081W_11_282533_284097_INTRON_206_531 5' exon 60.077494 178.170572 60.077494 119.093078 89.585286 1.952236685 0.014982 166 18 SH20953 20953 YML024W spliced 51.570267 117.68647 84.6283685 1.927515968 -0.107243 166 19 SH19586 19586 AEP2/ATP13 2.1 29.219363 85.509588 57.3644755 1.758643027 -0.028245 166 20 SH18144 18144 YLR406C_12_931752_931062_INTRON_58_406 intron 27.375353 113.160684 27.375353 86.785331 57.080342 1.756486567 -0.160885 166 21 SH9531 9531 RUF3 RUF3 41 58 31.760219 96.301616 64.0309175 1.806389725 -0.117535 166 22 SH8597 8597 snR19 / U1 RNA U1 481 497 29.543528 73.089759 51.3166435 1.710258242 0.154688 166 23 SH17719 17719 YKL081W_11_282533_284097_INTRON_206_531 3' exon 27.427961 103.247275 27.427961 76.819314 52.1236375 1.717034716 -0.035138 166 24 SH17329 17329 YIL004C_9_348502_347943_INTRON_12_142 3' exon 27.61513 115.297799 27.61513 88.682669 58.1488995 1.7645415 -0.166106 166 25 SH18374 18374 YMR079W_13_424988_426058_INTRON_10_165 3' exon 29.078918 111.228228 29.078918 83.14931 56.114114 1.74907211 -0.004284 166 26 SH16898 16898 YGL226C-A_7_73156_72747_INTRON_22_170 intron 37.472455 117.341442 37.472455 80.868987 59.170721 1.772106861 0.378495 166 27 SH21139 21139 YNL162W spliced 28.708796 87.560167 58.1344815 1.764433803 -0.088498 166 28 SH3029 3029 Ser2 3' flank 33.114687 85.429444 59.2720655 1.772850062 0.140702 166 29 SH19021 19021 YOR182C_15_678792_678190_INTRON_4_414 intron 27.690134 105.762073 27.690134 79.071939 53.3810365 1.727387002 -0.04615 166 30 SH8697 8697 LSR1 / U2 RNA U2 126 143 48.269532 105.353087 76.8113095 1.885425169 0.053267 166 31 SH15752 15752 YCR031C_3_178212_177492_INTRON_8_314 intron 50.0296 150.739904 50.0296 101.710304 75.869952 1.880069809 0.155359 166 32 SH3318 3318 Thr3 5' flank 24.984046 70.136231 47.5601385 1.677243111 -0.126902 166 33 SH878 878 Glu3 5' flank 30.10883 88.505895 59.3073625 1.773108611 -0.041389 166 34 SH21283 21283 YPL143W spliced 30.355322 94.311858 62.33359 1.79472214 -0.128767 166 35 SH13966 13966 MT COB Cytbi3 25.642902 96.235214 25.642902 71.592312 48.617607 1.686793579 -0.096493 166 36 SH11533 11533 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4551 4568 42.768117 93.746191 68.257154 1.834148176 0.187283 166 37 SH15413 15413 YBL059C-A_2_110500_110086_INTRON_35_119 3' exon 29.583113 115.7763 29.583113 87.193187 58.38815 1.766324715 -0.041848 166 38 SH1859 1859 Leu9 tRNA-exon/intron 36 52 30.105362 79.214598 54.65998 1.737669468 0.109613 166 39 SH21180 21180 YNR053C spliced 32.848396 85.699967 59.2741815 1.772865566 0.125005 166 40 SH17074 17074 YGR225W_7_945138_946919_INTRON_1184_1276 intron 28.442005 113.909465 28.442005 86.46746 57.4547325 1.759325807 -0.08519 166 41 SH13473 13473 MT COX1 intronic 27.842129 113.633953 27.842129 86.791824 57.3169765 1.758283273 -0.129103 166 42 SH1970 1970 Lys2 tRNA 51 63 37.671543 91.996821 64.834182 1.811804036 0.121224 166 43 SH7534 7534 snR79 snR79 11 28 28.538045 76.814569 52.676307 1.72161532 0.039679 166 44 SH13453 13453 MT COX1 intronic 25.442088 107.208405 25.442088 82.766317 54.1042025 1.733231 -0.251404 166 45 SH19195 19195 YPL081W_16_404945_406039_INTRON_8_508 intron 26.607955 95.244205 26.607955 69.63625 48.1221025 1.682344594 0.001236 166 46 SH20436 20436 YGL076C spliced 39.72838 94.267871 66.9981255 1.826062652 0.115177 166 47 SH16239 16239 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 27.327673 91.826934 27.327673 65.499261 46.413467 1.666644011 0.111406 166 48 SH16646 16646 YFR031C-A_6_221405_220494_INTRON_5_151 exon/intron 30.102416 113.916513 30.102416 84.814097 57.4582565 1.759352444 0.024239 166 49 SH931 931 Gly1 5' flank 28.210662 79.234613 53.7226375 1.730157326 -0.013117 166 50 SH1473 1473 Leu2 3' flank 28.057772 89.716085 58.8869285 1.770018902 -0.156827 166 51 SH6551 6551 snR46 3' 25.139494 67.594479 46.3669865 1.666208871 -0.078188 166 52 SH525 525 Cys1 5' flank 47.761732 98.97188 73.366806 1.865499613 0.170348 166 53 SH13985 13985 MT COB intronic 29.599279 110.214353 29.599279 81.615074 55.6071765 1.745130844 0.047781 166 54 SH10476 10476 RUF8 RUF8 306 327 25.24359 69.000036 47.121813 1.673221991 -0.091327 166 55 SH4427 4427 telomerase RNA telomerase 1171 1192 28.604313 75.886681 52.245497 1.718048865 0.056217 166 56 SH4336 4336 telomerase RNA telomerase 716 735 27.011112 81.957871 54.4844915 1.736272902 -0.128821 166 57 SH7318 7318 snR66 81-86 + 3' 81 29.398599 83.794914 56.5967565 1.752791543 0.008573 166 58 SH4539 4539 U3b (snR17b) U3b 251 270 29.075424 86.695826 57.885625 1.762570727 -0.056167 166 59 SH20563 20563 YHR001W-A spliced 35.635829 93.870304 64.7530665 1.81126034 0.032802 166 60 SH9758 9758 RUF4 RUF4 566 582 28.793195 89.620791 59.206993 1.772373005 -0.120554 166 61 SH17896 17896 YLR048W_12_242233_243350_INTRON_91_449 3' exon 31.222139 118.862416 31.222139 88.640277 59.931208 1.777653032 0.004861 166 62 SH12857 12857 MT COX1 COX1ai1 28.926685 104.942519 28.926685 77.015834 52.9712595 1.724040299 0.062545 166 63 SH5933 5933 snR36 snR36 121 136 33.027782 83.772403 58.4000925 1.766413535 0.167486 166 64 SH11817 11817 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5971 5988 28.020689 75.312086 51.6663875 1.713208097 0.024986 166 65 SH4937 4937 snR9 snR9 91 108 32.206267 86.727179 59.466723 1.774274007 0.08015 166 66 SH6995 6995 snR60 snR60 56 76 30.225451 87.590044 58.9077475 1.770172417 -0.020123 166 67 SH1998 1998 Lys3 5' flank 29.396527 91.774055 60.585291 1.782367198 -0.129527 166 68 SH477 477 Asp2 5' flank 28.45312 81.053752 54.753436 1.738411378 -0.01972 166 69 SH21206 21206 YOL127W spliced 30.952426 82.955157 56.9537915 1.755522641 0.095791 166 70 SH18968 18968 YOR096W_15_505793_506766_INTRON_145_545 exon/intron 28.880992 116.922213 28.880992 89.041221 58.9611065 1.770565625 -0.106442 166 71 SH5945 5945 snR36 snR36 181 202 31.19826 104.08248 67.64037 1.830205975 -0.290573 166 72 SH14854 14854 MT tRNA Ser2; tRNA Arg2 5' / tRNA Ser 26.5836 98.753172 26.5836 73.169572 49.876586 1.697896719 -0.048021 166 73 SH18913 18913 YOL120C_15_94401_93394_INTRON_113_559 intron 28.738654 102.750356 28.738654 75.011702 51.875178 1.7149596 0.076657 166 74 SH4744 4744 snR4 3' 28.441405 82.500382 55.4708935 1.744065161 -0.038207 166 75 SH10953 10953 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1651 1667 17621.03496 12943.22186 15282.12841 4.184183845 -0.363645 166 76 SH14332 14332 MT VAR1 includes 5’ processing site VAR1 31.613807 133.641301 31.613807 103.027494 67.3206505 1.828148304 -0.258575 166 77 SH18683 18683 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.511683 118.870956 29.511683 90.359273 59.935478 1.777683973 -0.100261 166 78 SH19424 19424 YPR132W_16_794960_795762_INTRON_66_430 intron 27.655037 109.390066 27.655037 82.735029 55.195033 1.741899997 -0.09388 166 79 SH16207 16207 YDR381W_4_1236547_1237993_INTRON_286_1051 exon/intron 27.758035 107.357005 27.758035 80.59897 54.1785025 1.733826997 -0.060686 166 80 SH11719 11719 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5481 5496 212.922755 177.354566 195.1386605 2.29034332 0.741267 166 81 SH7715 7715 snoRNA cluster1 snR77 32.935064 130.13405 32.935064 98.198986 65.567025 1.816685479 -0.126108 166 82 SH8506 8506 snR19 / U1 RNA U1 26 48 26.437138 85.371825 55.9044815 1.747446624 -0.210151 166 83 SH6014 6014 snR37 5' - 5 -14 5 25.935798 68.381476 47.158637 1.673561244 -0.030589 166 84 SH13204 13204 MT COX1 exon4/cox1-ai4 33.610088 127.30449 33.610088 94.694402 64.152245 1.807211859 -0.03497 166 85 SH19815 19815 Negative Control 39.275457 93.164593 66.220025 1.82098934 0.130026 166 86 SH15627 15627 YBR181C_2_592732_591670_INTRON_7_358 intron 61.016219 170.414372 61.016219 110.398153 85.707186 1.933017236 0.176156 166 87 SH3726 3726 Val3 3' flank 28.784314 79.980992 54.382653 1.73546039 0.015425 166 88 SH13769 13769 MT COB intronic 26.681774 109.634756 26.681774 83.952982 55.317378 1.742861587 -0.176016 166 89 SH12759 12759 MT COX1 COX1ai1 37.045067 121.670967 37.045067 85.6259 61.3354835 1.787711793 0.252623 166 90 SH14872 14872 MT tRNA Ser2; tRNA Arg2 3' 30.586142 122.904794 30.586142 93.318652 61.952397 1.792058114 -0.102251 166 91 SH6975 6975 snR60 5' 37.185097 152.87183 95.0284635 1.977853707 -0.921428 166 92 SH20589 20589 YHR021C spliced 27.89863 74.235988 51.067309 1.708142973 0.031078 166 93 SH17058 17058 YGR214W_7_920570_921783_INTRON_91_545 intron 31.04619 145.1519 31.04619 115.10571 73.07595 1.86377447 -0.499636 166 94 SH16019 16019 YDL189W_4_122079_123590_INTRON_1_99 exon/intron 36.993399 149.340493 36.993399 113.347094 75.1702465 1.876045974 -0.32368 166 95 SH10969 10969 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1731 1748 798.017398 622.205843 710.1116205 2.85132662 0.383687 166 96 SH6305 6305 snR42 snR42 306 320 32.641446 89.539791 61.0906185 1.785974522 0.048741 166 97 SH146 146 Arg1 3' flank 26.737611 79.488264 53.1129375 1.725200321 -0.117363 166 98 SH2247 2247 Phe1 3' flank 28.824306 77.395811 53.1100585 1.72517678 0.050937 166 99 SH20916 20916 YLR344W spliced 28.291616 71.515791 49.9037035 1.698132777 0.093838 166 100 SH12280 12280 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 47.180449 152.80839 47.180449 106.627941 76.904195 1.885950031 0.008922 166 101 SH17521 17521 YJL136C_10_156971_156248_INTRON_25_484 intron 28.791175 107.870127 28.791175 80.078952 54.4350635 1.735878734 0.014649 166 102 SH8507 8507 snR19 / U1 RNA U1 31 52 27.365432 81.249293 54.3073625 1.734858711 -0.095572 166 103 SH11424 11424 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4006 4021 2486.094728 1356.952785 1921.523757 3.283645758 0.651777 166 104 SH237 237 Arg3 41-53 41 53 44.171029 104.783046 74.4770375 1.872022393 -0.012365 167 2 SH7079 7079 snR63 5' 26.090266 77.525899 51.8080825 1.714397519 -0.139591 167 3 SH562 562 Cys1 3' flank 28.483365 78.191815 53.33759 1.727033389 0.018273 167 4 SH11517 11517 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4471 4488 39.314715 82.518376 60.9165455 1.784735267 0.378515 167 5 SH15181 15181 MT COX3 cox3 26.677456 94.045684 26.677456 68.368228 47.522842 1.676902405 0.023894 167 6 SH5204 5204 snR13 3' 26.757805 78.136561 52.447183 1.719722167 -0.098769 167 7 SH8108 8108 snoRNA cluster 3; 5' 35.44156 126.797206 35.44156 92.355646 63.898603 1.805491363 0.061163 167 8 SH21657 21657 copy of SH8992 29.08465 80.170667 54.6276585 1.737412586 0.032611 167 9 SH10246 10246 RUF6 3' 26.923129 79.977343 53.450236 1.727949627 -0.110477 167 10 SH8056 8056 snoRNA cluster 2 intergenic 26.779867 110.573148 26.779867 84.793281 55.786574 1.746529691 -0.179073 167 11 SH19064 19064 YOR293W_15_867094_867848_INTRON_53_489 exon/intron 26.65294 102.346473 26.65294 76.693533 51.6732365 1.713265664 -0.088141 167 12 SH4952 4952 snR9 snR9 166 182 30.911093 93.046335 61.978714 1.792242561 -0.083585 167 13 SH12121 12121 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7491 7513 29.00049 81.4468 55.223645 1.742125069 0.01134 167 14 SH13761 13761 MT COB intronic 28.958725 123.435727 28.958725 95.477002 62.2178635 1.793915094 -0.210802 167 15 SH7279 7279 snR65 3' 26.278212 68.702826 47.490519 1.676606916 -0.009829 167 16 SH18970 18970 YOR096W_15_505793_506766_INTRON_145_545 intron 46.451278 176.527659 46.451278 131.076381 88.7638295 1.948236031 -0.415111 167 17 SH7474 7474 snR71 5' - 5 -14 5 27.288688 83.414024 55.351356 1.743128265 -0.12719 167 18 SH8762 8762 LSR1 / U2 RNA U2 451 467 42.611958 97.104207 69.8580825 1.844216661 0.111682 167 19 SH6012 6012 snR37 5' 27.443467 66.615155 47.029311 1.672368616 0.103339 167 20 SH21014 21014 YMR033W spliced 33.286204 95.242149 64.2641765 1.807968947 -0.054959 167 21 SH7853 7853 snoRNA cluster1 intergenic 34.693756 126.452178 34.693756 92.758422 63.726089 1.804317266 0.034099 167 22 SH14611 14611 MT 21S rRNA Sce1 endonuc 27.595421 104.039334 27.595421 77.443913 52.519667 1.720321964 -0.031777 167 23 SH9194 9194 snR7 U5 RNA 3' 27.025772 75.68723 51.356501 1.710595427 -0.048715 167 24 SH6648 6648 snR48 snR48 66 83 28.498392 77.35779 52.928091 1.72368623 0.030004 167 25 SH3317 3317 Thr3 5' flank 26.463146 79.419129 52.9411375 1.723793268 -0.135933 167 26 SH4164 4164 SRP RNA 3' 31.115572 88.579518 59.847545 1.77704634 0.001345 167 27 SH16605 16605 YFL034C-B_6_63992_63015_INTRON_21_134 exon/intron 29.00975 108.494623 29.00975 80.484873 54.7473115 1.738362797 0.023837 167 28 SH6841 6841 snR52 3' 31.245881 88.51602 59.8809505 1.777288685 0.008048 167 29 SH13917 13917 MT COB Cytbi3 26.026329 106.011336 26.026329 80.985007 53.505668 1.72839979 -0.186843 167 30 SH441 441 Asp1 tRNA 26 38 52.843888 99.613255 76.2285715 1.882117781 0.245743 167 31 SH11766 11766 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5716 5731 188.503445 209.375755 198.9396 2.29872124 0.31599 167 32 SH11921 11921 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6491 6507 27.38819 67.034196 47.211193 1.674044975 0.093438 167 33 SH1330 1330 Ile3 tRNA-exon/intron 31 47 30.225311 82.604544 56.4149275 1.751394034 0.070527 167 34 SH4503 4503 U3b (snR17b) U3b 71 85 29.343812 82.858765 56.1012885 1.748972836 0.016306 167 35 SH9283 9283 RUF1 5' - 9 -9 9 28.122305 79.493531 53.807918 1.730846188 -0.022294 167 36 SH2901 2901 Pro8 tRNA 26 38 27.912657 77.564697 52.738677 1.722129231 -0.0118 167 37 SH13957 13957 MT COB Cytbi3 27.933311 109.854643 27.933311 82.921332 55.4273215 1.743723892 -0.077267 167 38 SH18760 18760 YNL162W_14_331319_332151_INTRON_5_516 intron 28.134869 102.4402 28.134869 75.305331 51.7201 1.713659356 0.032738 167 39 SH21412 21412 Ser3 spliced 30.538501 74.39679 52.4676455 1.719891576 0.199353 167 40 SH12117 12117 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7471 7488 30.497409 88.771452 59.6344305 1.775497076 -0.028861 167 41 SH7781 7781 snoRNA cluster1 intergenic 27.731472 107.009804 27.731472 80.278332 54.004902 1.732433182 -0.058499 167 42 SH15206 15206 MT COX3 cox3 29.000004 97.127744 29.000004 69.12774 49.063872 1.690761819 0.174054 167 43 SH20508 20508 YGR027C spliced 26.490858 75.87225 51.181554 1.709113468 -0.089557 167 44 SH4059 4059 SRP RNA SRP RNA 186 205 28.89542 81.895654 55.395537 1.743474777 -0.001002 167 45 SH17304 17304 YHR203C_8_505526_504472_INTRON_15_283 intron 29.28277 113.84237 29.28277 85.5596 57.421185 1.759072151 -0.026248 167 46 SH8126 8126 snoRNA cluster 3; snR41 27.192804 109.355282 27.192804 83.162478 55.177641 1.741763129 -0.130798 167 47 SH11746 11746 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5616 5634 271.15448 279.89073 275.522605 2.440157236 0.287025 167 48 SH2759 2759 Pro5 3' flank 27.555088 71.084746 49.319917 1.693022337 0.04884 167 49 SH18822 18822 YNL302C_14_62942_61957_INTRON_21_571 intron 27.958247 102.475834 27.958247 75.517587 51.737917 1.71380894 0.018054 167 50 SH4419 4419 telomerase RNA telomerase 1131 1147 30.146547 82.2901 56.2183235 1.74987789 0.072935 167 51 SH9718 9718 RUF4 RUF4 366 380 29.306091 95.50505 62.4055705 1.795223358 -0.195297 167 52 SH3166 3166 Ser5 5' flank 26.219979 69.430726 47.8253525 1.67965818 -0.024215 167 53 SH2019 2019 Lys3 tRNA-intron 41 57 26.100978 77.142916 51.621947 1.712834381 -0.134048 167 54 SH11023 11023 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2001 2014 135.70147 201.630131 168.6658005 2.227027032 -0.016719 167 55 SH1053 1053 Gly3 tRNA 1 15 82.309391 155.096543 118.702967 2.074461574 -0.143786 167 56 SH7513 7513 snR79 5' 31.283892 85.096043 58.1899675 1.764848115 0.070631 167 57 SH9557 9557 RUF3 RUF3 171 187 804.902767 762.34742 783.6250935 2.894108335 0.073761 167 58 SH20695 20695 YIL148W spliced 29.001519 83.90232 56.4519195 1.751678714 -0.018333 167 59 SH14350 14350 MT ORF9 and ORF10 (hypothetical) 5' 27.939947 96.826555 27.939947 69.886608 48.9132775 1.689426764 0.091863 167 60 SH3139 3139 Ser4 101 + 3' flank 101 29.203031 76.074288 52.6386595 1.721304821 0.092776 167 61 SH9109 9109 snR14 / U4 RNA 3' 26.896563 67.327084 47.1118235 1.673129914 0.054372 167 62 SH1370 1370 Leu1 5' flank 31.256382 91.98506 61.620721 1.789726776 -0.050972 167 63 SH2174 2174 Met2 tRNA 1 13 28.726017 82.709119 55.717568 1.745992152 -0.021976 167 64 SH2473 2473 Phe5 3' flank 30.60041 84.386751 57.4935805 1.759619356 0.054014 167 65 SH17415 17415 YIL106W_9_166412_167441_INTRON_21_105 3' exon 32.444346 122.071455 32.444346 90.627109 61.5357275 1.789127339 0.021963 167 66 SH10736 10736 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 566 583 29.976702 69.483043 49.7298725 1.696617346 0.232781 167 67 SH10704 10704 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 406 424 29.709205 75.23419 52.4716975 1.719925114 0.136272 167 68 SH16039 16039 YDL191W_4_117665_118518_INTRON_4_494 intron 844.036731 1766.594801 844.036731 923.55807 883.7974005 2.94635272 -0.166525 167 69 SH2335 2335 Phe3 tRNA 1 15 133.338717 200.266924 166.8028205 2.22220339 -0.026161 167 70 SH4640 4640 snR3 snR3 116 134 26.268719 81.460367 53.864543 1.73130298 -0.175236 167 71 SH17427 17427 YIL133C_9_99416_98527_INTRON_32_321 5' exon 31.246481 120.81432 31.246481 90.567839 60.90716 1.78466835 -0.027376 167 72 SH7115 7115 snR63 snR63 81 102 27.896224 65.589227 46.7427255 1.669714032 0.149744 167 73 SH3360 3360 Thr3 3' flank 35.70526 86.600615 61.1529375 1.786417323 0.198152 167 74 SH12065 12065 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7211 7231 28.327016 74.876718 51.601867 1.712665415 0.051277 167 75 SH16132 16132 YDR064W_4_579453_580447_INTRON_22_560 intron 29.771297 111.932746 29.771297 83.161449 56.466373 1.751789893 0.039876 167 76 SH2968 2968 Ser1 tRNA 71 83 42.475035 93.8735 68.1742675 1.83362048 0.178826 167 77 SH1579 1579 Leu4 tRNA-intron/exon 66 82 31.537356 94.441763 62.9895595 1.799268571 -0.083952 167 78 SH20503 20503 YGR001C spliced 30.782452 74.959473 52.8709625 1.723217217 0.2068 167 79 SH1835 1835 Leu9 5' flank 32.152829 85.676561 58.914695 1.770223634 0.096782 167 80 SH1242 1242 Ile2 5' flank 32.555393 85.212786 58.8840895 1.769997964 0.121832 167 81 SH821 821 Glu1 3' flank 30.781008 84.460472 57.62074 1.760578831 0.060539 167 82 SH7116 7116 snR63 snR63 86 108 28.585524 75.757337 52.1714305 1.717432745 0.056687 167 83 SH487 487 Asp2 5' flank - tRNA13 5' flank 13 36.985253 76.611693 56.798473 1.75433666 0.457183 167 84 SH9898 9898 RUF5-1 RUF5-1 296 310 29.454364 80.802348 55.128356 1.741375041 0.048554 167 85 SH11694 11694 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5356 5371 252.867609 260.779203 256.823406 2.409634601 0.31503 167 86 SH2934 2934 Ser1 5' flank 26.748224 82.51081 54.629517 1.737427361 -0.153981 167 87 SH10518 10518 RUF8 RUF8 516 534 28.827517 74.095456 51.4614865 1.711482327 0.094779 167 88 SH563 563 Cys1 3' flank 32.672391 91.053245 61.862818 1.791429699 0.020467 167 89 SH7437 7437 snR69 snR69 86 100 28.094396 81.858321 54.9763585 1.74017597 -0.053515 167 90 SH5663 5663 snR34 snR34 236 251 28.058248 82.9762 55.517224 1.744427742 -0.069521 167 91 SH96 96 Ala2 3' flank 26.250568 73.68399 49.967279 1.6986857 -0.079022 167 92 SH6081 6081 snR37 snR37 321 337 34.882729 120.914006 77.8983675 1.891528356 -0.505132 167 93 SH1602 1602 Leu4 3' flank 26.442048 49.263811 37.8529295 1.578099496 0.345901 167 94 SH17392 17392 YIL069C_9_232366_231550_INTRON_4_412 intron 26.036418 115.030075 26.036418 89.993657 58.0150375 1.763540577 -0.291716 167 95 SH12745 12745 MT COX1 COX1ai1 45.69552 144.177762 45.69552 99.482242 72.588881 1.860870102 0.122011 167 96 SH4704 4704 snR4 snR4 56 74 28.17119 86.806534 57.488862 1.759583712 -0.107135 167 97 SH1939 1939 Lys1 3' flank 33.173761 81.030879 57.10232 1.756653753 0.224862 167 98 SH12269 12269 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.305951 107.26215 29.305951 78.956199 54.131075 1.733446652 0.062176 167 99 SH9943 9943 RUF5-1 RUF5-1 521 535 29.261924 74.16714 51.714532 1.713612599 0.121992 167 100 SH11622 11622 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4996 5014 27.149558 66.766163 46.9578605 1.671708301 0.08043 167 101 SH21398 21398 Pro2_7 spliced 79.680016 159.783154 119.731585 2.078208732 -0.232658 167 102 SH3266 3266 Thr2 5' flank 28.030265 77.543662 52.7869635 1.722526681 -0.003606 167 103 SH6057 6057 snR37 snR37 201 217 27.612997 79.019788 53.3163925 1.726860756 -0.050746 167 104 SH18194 18194 YML024W_13_225889_226697_INTRON_4_401 intron 33.381504 123.095324 33.381504 90.71382 62.047662 1.792725422 0.046404 168 2 SH20901 20901 YLR306W spliced 29.70425 90.924953 60.3146015 1.780422463 -0.10121 168 3 SH15027 15027 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.249847 91.404873 25.249847 67.155026 46.2024365 1.664664879 -0.063373 168 4 SH3874 3874 RNaseP RNaseP 336 348 27.309413 95.357224 61.3333185 1.787696463 -0.287345 168 5 SH476 476 Asp2 5' flank 27.210398 73.281895 50.2461465 1.70110276 -0.004613 168 6 SH21390 21390 Phe1_5 spliced 203.510313 283.821716 243.6660145 2.38679496 -0.094196 168 7 SH19431 19431 YPR132W_16_794960_795762_INTRON_66_430 intron 29.215639 107.51775 29.215639 79.302111 54.258875 1.734470785 0.051984 168 8 SH19917 19917 YAL003W spliced 29.374298 75.58101 52.477654 1.719974412 0.110307 168 9 SH8996 8996 snR17a / U3a U3a 266 282 85.041081 154.79191 119.9164955 2.078878928 -0.10427 168 10 SH1452 1452 Leu2 tRNA-exon/intron 31 50 27.515774 79.25049 53.383132 1.72740405 -0.06031 168 11 SH16088 16088 YDR025W_4_491510_492319_INTRON_46_384 intron 25.23148 85.387135 25.23148 61.155655 43.1935675 1.635419075 0.030367 168 12 SH1569 1569 Leu4 tRNA 16 28 31.452513 91.175251 61.313882 1.787558814 -0.02892 168 13 SH1023 1023 Gly2 3' flank 27.007275 62.332701 44.669988 1.650015836 0.138123 168 14 SH3739 3739 Val4 5' flank 28.923537 90.680724 59.8021305 1.776716656 -0.132697 168 15 SH19602 19602 AEP2/ATP13 2.1 35.833348 97.641281 66.7373145 1.824368727 -0.042453 168 16 SH17888 17888 YLR048W_12_242233_243350_INTRON_91_449 intron 27.886495 109.927623 27.886495 83.041128 55.4638115 1.744009711 -0.081873 168 17 SH5050 5050 snR10 3' 31.786586 72.50354 52.145063 1.717213196 0.300634 168 18 SH11698 11698 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5376 5391 16296.72943 9629.150373 12962.9399 4.112703508 0.001941 168 19 SH18854 18854 YNR053C_14_723108_721117_INTRON_811_1341 intron 28.457679 100.03083 28.457679 72.573151 50.515415 1.703423925 0.091025 168 20 SH1147 1147 His1 5' flank 26.750466 75.609621 51.1800435 1.709100651 -0.067449 168 21 SH8724 8724 LSR1 / U2 RNA U2 261 277 37.862041 98.591448 68.2267445 1.833954649 -0.016908 168 22 SH8296 8296 snoRNA cluster4 intergenic 27.483059 101.278464 27.483059 74.795405 51.139232 1.708754202 -0.005028 168 23 SH1194 1194 Ile1 5' flank 29.108122 88.873383 58.9907525 1.770783936 -0.093039 168 24 SH2397 2397 Phe4 tRNA-exon/intron 36 53 30.707608 83.353623 57.0306155 1.756108059 0.07775 168 25 SH4484 4484 U3b (snR17b) 5' 26.533016 60.424949 43.4789825 1.638279372 0.136596 168 26 SH16970 16970 YGR034W_7_555923_556666_INTRON_20_496 intron 31.271464 113.037986 31.271464 82.766522 57.018993 1.756019543 0.113038 168 27 SH9583 9583 RUF3 RUF3 301 322 26.911204 72.82395 49.867577 1.697818267 -0.01989 168 28 SH21103 21103 YNL050C spliced 29.271388 94.736062 62.003725 1.792417781 -0.184376 168 29 SH13632 13632 MT ATP6 ATP6 26.654315 100.068097 26.654315 74.413782 50.5340485 1.703584093 -0.059085 168 30 SH14846 14846 MT tRNA Asp 3' 28.236747 107.584647 28.236747 80.3479 54.2923235 1.734738428 -0.025345 168 31 SH14587 14587 MT 21S rRNA Sce1 endonuc 32.37994 124.453124 32.37994 93.073184 62.726562 1.797451485 -0.031774 168 32 SH587 587 Gln1 5' flank 30.386043 96.894084 63.6400635 1.803730604 -0.1692 168 33 SH5825 5825 snR35 snR35 311 328 32.87402 74.436066 53.655043 1.729610547 0.337678 168 34 SH6027 6027 snR37 snR37 51 68 33.979685 89.962305 61.970995 1.792188469 0.078478 168 35 SH7986 7986 snoRNA cluster 2 snR57 26.032194 98.586448 26.032194 73.554254 49.793224 1.697170247 -0.093419 168 36 SH3652 3652 Val2 tRNA 1 15 59.729268 124.211396 91.970332 1.963647754 -0.070427 168 37 SH5250 5250 snR30 snR30 101 113 30.312526 95.587592 62.950059 1.798996141 -0.151441 168 38 SH4513 4513 U3b (snR17b) U3b 121 138 30.230817 91.401587 60.816202 1.784019295 -0.08578 168 39 SH15359 15359 YBL026W_2_170585_171000_INTRON_55_182 intron 28.029015 106.022028 28.029015 78.993013 53.511014 1.728443181 -0.022231 168 40 SH13989 13989 MT COB intronic 27.988792 112.659287 27.988792 85.670495 56.8296435 1.754574932 -0.106184 168 41 SH4683 4683 snR4 5' 27.585272 74.398725 50.9919985 1.707502033 0.007224 168 42 SH16707 16707 YGL031C_7_438393_437938_INTRON_1_456 intron 32.205446 134.191094 32.205446 102.985648 67.595547 1.829918087 -0.241902 168 43 SH10846 10846 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1116 1133 52.577317 103.976948 78.2771325 1.893634908 0.15581 168 44 SH18566 18566 YNL012W_14_609682_611661_INTRON_106_189 5' exon 52.528493 157.266822 52.528493 105.738329 79.133411 1.898359886 0.121514 168 45 SH844 844 Glu2 5' flank - tRNA4 4 29.59905 88.811112 59.205081 1.77235898 -0.06957 168 46 SH18407 18407 YMR125W_13_517538_520445_INTRON_26_347 intron 27.39278 104.868167 27.39278 78.475387 52.9340835 1.723735398 -0.058911 168 47 SH21271 21271 YPL090C spliced 33.70049 93.273101 63.4867955 1.802683407 -0.001965 168 48 SH129 129 Arg1 21-33 21 33 40.492861 96.632427 68.562644 1.836087557 0.079759 168 49 SH8432 8432 snoRNA cluster 5 intergenic 34.368583 134.639393 34.368583 101.27081 67.8196965 1.831355842 -0.152241 168 50 SH3580 3580 Tyr2 3' flank 27.921153 81.723596 54.8223745 1.738957842 -0.06352 168 51 SH10127 10127 RUF6 RUF6 481 497 27.252831 74.930359 51.091595 1.708349461 -0.022958 168 52 SH11950 11950 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6636 6649 43.188869 97.919321 70.554095 1.848522226 0.105775 168 53 SH6253 6253 snR42 snR42 46 60 36.511175 102.990554 69.7508645 1.843549595 -0.136839 168 54 SH18956 18956 YOL127W_15_80347_81189_INTRON_14_427 intron 31.183434 114.153619 31.183434 83.970185 57.5768095 1.760247596 0.08693 168 55 SH15918 15918 YDL083C_4_307788_306925_INTRON_25_456 intron 32.495139 129.361775 32.495139 97.866636 65.1808875 1.81412027 -0.130717 168 56 SH16845 16845 YGL178W_7_167356_170575_INTRON_4_643 intron/exon 28.407356 116.102492 28.407356 88.695136 58.551246 1.767536142 -0.122549 168 57 SH162 162 Arg2 5' flank 77.463651 122.553044 100.0083475 2.000036251 0.21851 168 58 SH14407 14407 MT 21S rRNA 21S rRNA3 30.762605 123.78885 30.762605 94.026245 62.394425 1.795145787 -0.106237 168 59 SH7569 7569 snR189 5' 28.84932 80.284014 54.566667 1.736927427 0.01589 168 60 SH5200 5200 snR13 3' 29.034663 79.671569 54.353116 1.735224447 0.035623 168 61 SH9981 9981 RUF5-1 RUF5-1 711 732 28.905815 87.476215 58.191015 1.764855932 -0.077861 168 62 SH12283 12283 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.317843 126.171099 33.317843 93.853256 63.5855495 1.803358429 -0.024316 168 63 SH20709 20709 YJL024C spliced 28.828764 78.282389 53.5555765 1.728804699 0.039825 168 64 SH15007 15007 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 26.474671 104.712321 26.474671 79.23765 52.8561605 1.723095613 -0.132823 168 65 SH4543 4543 U3b (snR17b) U3b 271 285 30.504657 82.025826 56.2652415 1.750240187 0.093716 168 66 SH10106 10106 RUF6 RUF6 376 394 27.721876 78.33495 53.028413 1.72450863 -0.034616 168 67 SH18332 18332 YML094W_13_82275_82849_INTRON_17_99 3' exon 29.229693 118.277902 29.229693 90.048209 59.638951 1.775529996 -0.107776 168 68 SH654 654 Gln2 tRNA 56 70 46.364427 109.042615 77.703521 1.890440699 -0.051274 168 69 SH8240 8240 snoRNA cluster 3; 3' 29.238465 95.059716 29.238465 66.821251 48.029858 1.681511303 0.222388 168 70 SH20328 20328 YER074W spliced 31.257426 94.356841 62.8071335 1.798008973 -0.090309 168 71 SH8431 8431 snoRNA cluster 5 intergenic 80.006216 223.194361 80.006216 144.188145 112.0971805 2.049594689 -0.043795 168 72 SH2526 2526 Pro1 3' flank 26.608459 71.761685 49.185072 1.691833311 -0.027578 168 73 SH17772 17772 YKL180W_11_109271_110131_INTRON_310_615 intron 28.794712 119.948876 28.794712 92.154164 60.474438 1.781571841 -0.163606 168 74 SH19920 19920 YAL030W spliced 30.628084 84.043514 57.335799 1.758425869 0.061529 168 75 SH8495 8495 snR19 / U1 RNA 5' 32.285061 89.109787 60.697424 1.78317026 0.041495 168 76 SH17717 17717 YKL081W_11_282533_284097_INTRON_206_531 intron 27.572616 110.506544 27.572616 83.933928 55.753272 1.74627036 -0.113908 168 77 SH9011 9011 snR17a / U3a U3a 341 359 27.670618 83.438748 55.554683 1.744720674 -0.101299 168 78 SH21700 21700 copy of SH10875 1102.03293 930.143458 1016.088194 3.006931405 0.172382 168 79 SH452 452 Asp1 3' flank 37.024686 86.847418 61.936052 1.791943519 0.223388 168 80 SH13914 13914 MT COB Cytbi3 26.115557 105.260357 26.115557 80.1448 53.1301785 1.725341275 -0.169953 168 81 SH13061 13061 MT COX1 intronic 28.624861 99.03739 28.624861 71.412529 50.018695 1.699132357 0.117776 168 82 SH19433 19433 YPR132W_16_794960_795762_INTRON_66_430 intron 28.477614 111.159162 28.477614 83.681548 56.079581 1.74880476 -0.050043 168 83 SH17518 17518 YJL136C_10_156971_156248_INTRON_25_484 intron 27.928581 109.061717 27.928581 82.133136 55.0308585 1.740606288 -0.068024 168 84 SH17499 17499 YJL041W_10_365480_368069_INTRON_2_119 intron/exon 27.40877 106.421479 27.40877 80.012709 53.7107395 1.730061132 -0.077235 168 85 SH19972 19972 YBL072C spliced 29.3869 80.226024 54.806462 1.738831767 0.0514 168 86 SH2828 2828 Pro7 5' flank 33.713187 96.738312 65.2257495 1.814419078 -0.075717 168 87 SH15323 15323 YAL003W_1_142172_143158_INTRON_81_446 intron 33.379708 118.542365 33.379708 86.162657 59.7711825 1.776491848 0.138151 168 88 SH15090 15090 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.54139 100.301881 27.54139 73.760491 50.6509405 1.704587514 0.012425 168 89 SH12106 12106 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7416 7429 38.666355 79.753887 59.210121 1.772395949 0.433498 168 90 SH13893 13893 MT COB intronic 36.576681 130.589528 36.576681 95.012847 65.794764 1.818191333 0.030509 168 91 SH18479 18479 YMR143W_13_551927_552902_INTRON_25_568 intron/exon 30.574561 177.395706 30.574561 147.821145 89.197853 1.950354401 -1.02565 168 92 SH9153 9153 snR7 U5 RNA U5 36 52 32.827408 126.157222 79.492315 1.900325145 -0.642834 168 93 SH16054 16054 YDL191W_4_117665_118518_INTRON_4_494 3' exon 28.419629 125.435985 28.419629 98.016356 63.2179925 1.800840701 -0.276559 168 94 SH21281 21281 YPL129W spliced 30.037207 75.556343 52.796775 1.722607395 0.152682 168 95 SH7997 7997 snoRNA cluster 2 intergenic 25.664497 93.859621 25.664497 69.195124 47.4298105 1.676051389 -0.062191 168 96 SH15650 15650 YBR189W_2_604466_605466_INTRON_8_420 intron 28.046936 119.192281 28.046936 92.145345 60.0961405 1.778846582 -0.198675 168 97 SH9414 9414 RUF2 5' 28.776444 87.880134 58.328289 1.765879237 -0.090991 168 98 SH14338 14338 MT VAR1 includes 5’ processing site VAR1 27.249485 99.487832 27.249485 73.238347 50.243916 1.701083481 -0.001278 168 99 SH10067 10067 RUF6 RUF6 181 196 77.628302 117.078582 97.353442 1.988351311 0.305088 168 100 SH2055 2055 Lys4 5' flank 27.926245 66.678024 47.3021345 1.674880739 0.136017 168 101 SH4029 4029 SRP RNA SRP RNA 36 55 28.293336 83.480391 55.8868635 1.747309737 -0.059865 168 102 SH6250 6250 snR42 snR42 31 49 28.47754 76.429554 52.453547 1.719774861 0.040711 168 103 SH14594 14594 MT 21S rRNA Sce1 endonuc 28.247604 103.155774 28.247604 75.90817 52.077887 1.716653355 0.032289 168 104 SH19472 19472 ADH1 29.973976 85.103477 57.5387265 1.759960245 0.013246 169 2 SH13033 13033 MT COX1 COX1ai2 28.264281 96.051388 28.264281 68.787107 48.525694 1.685971755 0.129306 169 3 SH5228 5228 snR30 5' - 10 -9 10 34.917074 111.116978 73.017026 1.86342414 -0.330218 169 4 SH3680 3680 Val2 3' flank 30.003144 80.216329 55.1097365 1.741228335 0.090623 169 5 SH11204 11204 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2906 2924 84.09597 132.356755 108.2263625 2.034333062 0.164944 169 6 SH14149 14149 MT COB intronic 26.180378 105.1842 26.180378 80.003822 53.0921 1.725029904 -0.163519 169 7 SH18930 18930 YOL121C_15_92849_92025_INTRON_21_410 intron 33.842126 129.656503 33.842126 96.814377 65.3282515 1.815101035 -0.07405 169 8 SH8396 8396 snoRNA cluster 5 snR190 108.128055 261.710038 108.128055 154.581983 131.355019 2.118446672 0.168177 169 9 SH3412 3412 Thr4 3' flank 29.513859 96.744418 63.1291385 1.800229863 -0.205788 169 10 SH2220 2220 Phe1 5' flank 33.907571 104.243778 69.0756745 1.839325134 -0.222654 169 11 SH18723 18723 YNL147W_14_350937_351380_INTRON_19_138 5' exon 29.220809 118.829212 29.220809 90.608403 59.914606 1.777532708 -0.117777 169 12 SH3751 3751 Val4 5' flank 28.777544 90.531373 59.6544585 1.775642908 -0.13692 169 13 SH14472 14472 MT 21S rRNA 21S rRNA3 28.509355 109.820446 28.509355 82.311091 55.410223 1.743589898 -0.031411 169 14 SH2402 2402 Phe4 tRNA 61 75 1244.024504 1125.689414 1184.856959 3.073665924 0.032625 169 15 SH13100 13100 MT COX1 COX1ai3 26.66407 112.373379 26.66407 86.709309 56.6866895 1.753481095 -0.20961 169 16 SH8144 8144 snoRNA cluster 3; intergenic 28.877883 143.953325 28.877883 116.075442 72.4766625 1.860198186 -0.578089 169 17 SH7388 7388 snR68 3' 35.256868 97.271606 66.264237 1.821279202 -0.048613 169 18 SH15112 15112 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF3 exon3 26.546257 87.781688 26.546257 62.235431 44.390844 1.647293402 0.107527 169 19 SH8178 8178 snoRNA cluster 3; snR70 35.187276 104.497859 35.187276 70.310583 52.7489295 1.72221365 0.522893 169 20 SH16632 16632 YFL039C_6_54695_53260_INTRON_11_318 3' exon 26.789329 97.135013 26.789329 71.345684 49.0675065 1.690793989 -0.008952 169 21 SH18157 18157 YLR426W_12_987057_988108_INTRON_81_151 intron 27.980727 112.743157 27.980727 85.76243 56.8715785 1.754895282 -0.107801 169 22 SH12222 12222 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.922248 107.214766 26.922248 81.292518 54.107383 1.733256529 -0.126869 169 23 SH2199 2199 Met2 3' flank 29.197112 72.235725 50.7164185 1.705148577 0.144232 169 24 SH13126 13126 MT COX1 COX1ai3 27.472172 105.938593 27.472172 79.466421 53.4692965 1.72810447 -0.066023 169 25 SH18302 18302 YML073C_13_124172_123227_INTRON_16_430 intron 27.965538 111.420135 27.965538 84.454597 56.2100675 1.749814107 -0.093439 169 26 SH12898 12898 MT COX1 intronic 30.644323 105.981319 30.644323 76.336996 53.4906595 1.728277952 0.180094 169 27 SH8971 8971 snR17a / U3a U3a 141 156 28.695857 81.911499 55.303678 1.742754015 -0.014253 169 28 SH18843 18843 YNL312W_14_48286_49215_INTRON_8_115 exon/intron 28.831695 111.439606 28.831695 83.607911 56.219803 1.749889319 -0.025879 169 29 SH16305 16305 YDR450W_4_1359912_1360787_INTRON_48_482 intron 31.098851 115.708848 31.098851 85.609997 58.354424 1.766073787 0.053376 169 30 SH11874 11874 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6256 6272 11526.87493 10119.01577 10822.94535 4.034345466 -0.528126 169 31 SH15328 15328 YAL003W_1_142172_143158_INTRON_81_446 intron 28.587628 115.545219 28.587628 87.957591 58.2726095 1.765464467 -0.101165 169 32 SH15081 15081 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.773399 108.3233 28.773399 80.549901 54.66165 1.737682737 0.007614 169 33 SH2918 2918 Pro8 3' flank 26.523514 72.876293 49.6999035 1.696355545 -0.048525 169 34 SH9902 9902 RUF5-1 RUF5-1 316 335 26.219298 73.189432 49.704365 1.69639453 -0.074855 169 35 SH16274 16274 YDR447C_4_1355542_1354818_INTRON_4_317 intron 41.719712 141.678456 41.719712 100.958744 71.339228 1.853328405 0.014111 169 36 SH18815 18815 YNL302C_14_62942_61957_INTRON_21_571 intron 26.796129 106.756406 26.796129 80.960277 53.878203 1.731413102 -0.131616 169 37 SH16086 16086 YDR025W_4_491510_492319_INTRON_46_384 intron 27.714995 105.945489 27.714995 79.230494 53.4727445 1.728132475 -0.046465 169 38 SH14562 14562 MT 21S rRNA 21S rRNA3 29.742576 96.254145 29.742576 67.511569 48.6270725 1.686878124 0.245446 169 39 SH17454 17454 YIL148W_9_68708_69528_INTRON_9_442 intron 31.959767 132.891703 31.959767 101.931936 66.9458515 1.82572367 -0.227564 169 40 SH8970 8970 snR17a / U3a U3a 136 150 34.302231 101.381926 67.8420785 1.831499145 -0.15612 169 41 SH21724 21724 copy of SH11919 29.794237 80.568375 55.181306 1.741791975 0.073074 169 42 SH14153 14153 MT COB intronic 27.311385 93.032562 27.311385 66.721177 47.016281 1.672248273 0.092522 169 43 SH1699 1699 Leu6 tRNA 61 73 29.362059 81.512468 55.4372635 1.743801784 0.033879 169 44 SH4906 4906 snR9 5' 27.469748 67.976625 47.7231865 1.678729434 0.085768 169 45 SH4838 4838 snR8 5' 27.664432 69.072383 48.3684075 1.684561789 0.084024 169 46 SH17081 17081 YHL001W_8_104270_105084_INTRON_130_527 5' exon 29.744232 109.043317 29.744232 80.299085 55.0216585 1.740533677 0.073261 169 47 SH10871 10871 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1241 1254 12391.38254 7298.092518 9844.737528 3.993204142 0.08307 169 48 SH4437 4437 telomerase RNA telomerase 1221 1238 29.816715 79.490731 54.653723 1.737619751 0.087977 169 49 SH3945 3945 RNase MRP RNaseMRP 141 160 28.015889 77.386428 52.7011585 1.721820162 -0.002541 169 50 SH4652 4652 snR3 snR3 176 193 30.334222 89.06089 59.697556 1.775956552 -0.041077 169 51 SH4436 4436 telomerase RNA telomerase 1216 1235 26.531738 73.573345 50.0525415 1.699426134 -0.057063 169 52 SH9122 9122 snR14 / U4 RNA 3' 33.257041 99.462736 66.3598885 1.821905648 -0.143759 169 53 SH5406 5406 snR31 snR31 96 108 35.293168 90.197955 62.7455615 1.79758301 0.105582 169 54 SH5035 5035 snR10 snR10 206 218 53.399417 119.519992 86.4597045 1.936813747 -0.104108 169 55 SH1734 1734 Leu7 5' flank 28.179041 78.745529 53.462285 1.728047517 -0.009031 169 56 SH1301 1301 Ile2 3' flank 27.070284 67.226147 47.1482155 1.67346526 0.06821 169 57 SH17072 17072 YGR225W_7_945138_946919_INTRON_1184_1276 5' exon 32.318205 119.991051 32.318205 88.672846 60.4955255 1.781723254 0.050472 169 58 SH20640 20640 YHR141C spliced 34.627115 91.973244 63.3001795 1.801404942 0.049718 169 59 SH7 7 Ala1 5' flank 28.307038 77.557649 52.9323435 1.723721122 0.014726 169 60 SH7667 7667 snoRNA cluster1 snR78 28.449639 114.505162 28.449639 87.055523 57.752581 1.761571398 -0.091694 169 61 SH16621 16621 YFL039C_6_54695_53260_INTRON_11_318 intron 30.520738 118.104994 30.520738 88.584256 59.552497 1.774899976 -0.024571 169 62 SH1116 1116 Gly4 tRNA 56 70 30.528307 75.933319 53.230813 1.726163099 0.178256 169 63 SH714 714 Gln3 3' flank 26.392728 66.887198 46.639963 1.668758197 0.024245 169 64 SH10505 10505 RUF8 RUF8 451 468 28.753945 86.278573 57.516259 1.759790631 -0.063585 169 65 SH12116 12116 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7466 7484 30.653537 90.948652 60.8010945 1.783911397 -0.059509 169 66 SH6203 6203 snR40 snR40 76 94 32.304686 84.012079 58.1583825 1.764612319 0.133438 169 67 SH20012 20012 YBR084C-A spliced 29.518859 90.941349 60.230104 1.779813613 -0.109868 169 68 SH20210 20210 YDR059C spliced 33.499969 90.178687 61.839328 1.791264762 0.061446 169 69 SH19733 19733 Negative Control 29.356924 85.492749 57.4248365 1.759099767 -0.021654 169 70 SH21921 21921 copy of SH20201 32.143722 90.452662 61.298192 1.787447665 0.012484 169 71 SH11300 11300 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3386 3403 32.648055 91.879534 62.2637945 1.794235584 0.001486 169 72 SH18858 18858 YNR053C_14_723108_721117_INTRON_811_1341 intron 26.195391 88.712988 26.195391 63.517597 44.856494 1.651825326 0.061934 169 73 SH17955 17955 YLR185W_12_522665_523290_INTRON_8_366 intron 28.575307 110.785707 28.575307 83.2104 55.8928535 1.747356282 -0.037937 169 74 SH13652 13652 MT ATP6 ATP6 28.509002 105.135799 28.509002 77.626797 53.0678995 1.724831898 0.02723 169 75 SH1303 1303 Ile2 3' flank 30.591531 79.078781 54.835156 1.739059083 0.141516 169 76 SH496 496 Asp2 tRNA 41 53 4858.666462 6011.788435 5435.227449 3.735217723 -0.829566 169 77 SH9008 9008 snR17a / U3a U3a 326 350 28.540245 76.838038 52.6891415 1.721721122 0.039519 169 78 SH7621 7621 snR189 snR189 176 188 98.540543 189.98598 144.2632615 2.159155746 -0.294838 169 79 SH18692 18692 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.53522 97.218304 28.53522 69.683084 49.109152 1.691162435 0.135261 169 80 SH8866 8866 LSR1 / U2 RNA U2 971 988 30.857434 90.031383 60.4444085 1.781356132 -0.034955 169 81 SH4390 4390 telomerase RNA telomerase 986 1005 28.597896 76.913079 52.7554875 1.722267641 0.042343 169 82 SH18031 18031 YLR316C_12_766358_765266_INTRON_230_285 intron 28.257904 110.822506 28.257904 83.564602 55.911253 1.747499225 -0.063236 169 83 SH18927 18927 YOL121C_15_92849_92025_INTRON_21_410 intron 32.041849 117.710358 32.041849 86.668509 59.355179 1.773458619 0.074347 169 84 SH617 617 Gln1 3' flank 35.940714 97.361551 66.6511325 1.823807533 -0.03407 169 85 SH20626 20626 YHR101C spliced 27.223967 70.549017 48.886492 1.689188874 0.032817 169 86 SH13673 13673 MT ATP6 3' 27.462551 107.240891 27.462551 80.77834 54.1204455 1.733361363 -0.083077 169 87 SH15681 15681 YBR191W_2_606228_607098_INTRON_12_399 intron 27.411727 106.52409 27.411727 80.112363 53.762045 1.73047578 -0.078278 169 88 SH18001 18001 YLR287C-A_12_713158_712537_INTRON_4_433 intron 35.634159 132.086262 35.634159 97.452103 66.543131 1.823103232 -0.04328 169 89 SH6156 6156 snR39B 3' 26.790344 71.405642 49.097993 1.69106374 -0.009686 169 90 SH7004 7004 snR60 101-104 + 3' 101 28.926527 91.966433 60.44648 1.781371016 -0.154338 169 91 SH21301 21301 YPL218W spliced 29.032392 71.304129 50.1682605 1.700429043 0.146458 169 92 SH13145 13145 MT COX1 intronic 26.700962 90.476244 26.700962 64.775282 45.738122 1.660278329 0.07774 169 93 SH6229 6229 snR42 5' 32.339152 72.030328 52.18474 1.717543524 0.339663 169 94 SH11826 11826 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6016 6029 287.584992 256.842175 272.2135835 2.434909793 0.50096 169 95 SH20334 20334 YER074W-A spliced 31.353846 133.355846 82.354846 1.915689159 -0.79508 169 96 SH4890 4890 snR8 3' 31.711 116.063754 73.887377 1.868570249 -0.4993 169 97 SH370 370 Asn1 5' flank 111.556206 147.208454 129.38233 2.111874968 0.289133 169 98 SH19014 19014 YOR182C_15_678792_678190_INTRON_4_414 intron 28.859259 110.750095 28.859259 82.890836 55.8750475 1.747217905 -0.015454 169 99 SH13121 13121 MT COX1 COX1ai3 27.331353 98.225086 27.331353 71.893733 49.612543 1.695591488 0.02228 169 100 SH20871 20871 YLR128W spliced 30.130907 91.280677 60.705792 1.78323013 -0.088163 169 101 SH9851 9851 RUF5-1 RUF5-1 61 78 28.318643 85.797077 57.05786 1.756315479 -0.085587 169 102 SH16419 16419 YER056C-A_5_270183_269421_INTRON_38_434 intron/exon 36.557553 126.212543 36.557553 90.65499 63.6062715 1.803499939 0.125404 169 103 SH8976 8976 snR17a / U3a U3a 166 183 28.574236 90.322131 59.4481835 1.774138589 -0.14283 169 104 SH2998 2998 Ser2 5' flank 29.534864 76.598587 53.0667255 1.72482229 0.107188 170 2 SH17570 17570 YJL189W_10_75932_76473_INTRON_7_392 intron 31.083632 114.201478 31.083632 84.117846 57.600739 1.760428055 0.079921 170 3 SH9605 9605 RUF3 RUF3 411 430 28.561607 77.665158 53.1133825 1.72520396 0.030208 170 4 SH15631 15631 YBR181C_2_592732_591670_INTRON_7_358 3' exon 28.152713 107.665515 28.152713 80.512802 54.3327575 1.735061747 -0.033014 170 5 SH704 704 Gln3 tRNA 51 63 43.353204 99.812057 71.5826305 1.854807654 0.070198 170 6 SH6597 6597 snR47 91-99 + 3' 91 34.075975 79.492599 56.784287 1.754228177 0.290426 170 7 SH6627 6627 snR48 5' 27.385014 75.023333 51.2041735 1.70930536 -0.01483 170 8 SH11028 11028 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2026 2044 32584.65342 17762.91443 25173.78392 4.4009485 -0.060909 170 9 SH21827 21827 copy of SH16122 32.464476 77.038742 54.751609 1.738396886 0.274091 170 10 SH19418 19418 YPR132W_16_794960_795762_INTRON_66_430 intron 26.728101 103.413679 26.728101 77.685578 52.2068395 1.717727403 -0.095066 170 11 SH3528 3528 Tyr2 5' flank 31.445832 71.617588 51.53171 1.712074554 0.292636 170 12 SH6687 6687 snR49 5' 29.687588 68.144983 48.9162855 1.689453471 0.232921 170 13 SH7845 7845 snoRNA cluster1 snR74 37.862077 128.220676 37.862077 91.358599 64.610338 1.810302013 0.139673 170 14 SH21833 21833 copy of SH16333 50.834664 156.30034 103.567502 2.015223501 -0.665412 170 15 SH7975 7975 snoRNA cluster 2 snR57 33.524078 108.364676 33.524078 75.840598 54.682338 1.737847075 0.341325 170 16 SH15184 15184 MT COX3 cox3 27.77121 101.614463 27.77121 74.843253 51.3072315 1.710178581 0.014387 170 17 SH14750 14750 MT ORF11; tRNA Leu; tRNA Gln ORF11 27.813488 105.439132 27.813488 78.625644 53.219566 1.726071329 -0.032108 170 18 SH3641 3641 Val2 5' flank 27.200523 80.469893 53.835208 1.731066395 -0.09731 170 19 SH3550 3550 Tyr2 tRNA 21 36 52.045652 131.318242 91.681947 1.962283828 -0.310776 170 20 SH11434 11434 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4056 4074 28.802745 68.490867 48.646806 1.687054331 0.169791 170 21 SH10639 10639 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 81 96 75.328837 123.002686 99.1657615 1.996361751 0.182709 170 22 SH8062 8062 snoRNA cluster 2 intergenic/snR61 32.75996 117.783006 32.75996 86.023046 59.391503 1.773724316 0.115576 170 23 SH256 256 Arg3 3' flank 50.832415 100.332895 75.582655 1.878422143 0.196742 170 24 SH16888 16888 YGL189C_7_148970_148233_INTRON_1_368 intron 28.674184 115.514425 28.674184 87.840241 58.2572125 1.765349701 -0.095053 170 25 SH3447 3447 Trp1 tRNA 66 82 40.179768 108.144398 74.162083 1.870181919 -0.157581 170 26 SH8263 8263 snoRNA cluster4 snR67 61.430776 172.495258 61.430776 112.064482 86.747629 1.938257613 0.153571 170 27 SH5120 5120 snR11 snR11 201 215 29.816414 73.246066 51.53124 1.712070593 0.169873 170 28 SH4655 4655 snR3 191-195 + 3' 191 29.900921 70.044315 49.972618 1.698732102 0.219956 170 29 SH18640 18640 YNL096C_14_444312_443395_INTRON_145_489 3' exon 28.025787 93.382331 28.025787 66.356544 47.1911655 1.673860703 0.147507 170 30 SH6285 6285 snR42 snR42 206 224 28.416498 81.140516 54.778507 1.738610191 -0.023217 170 31 SH14186 14186 MT COB Exon6 35.633804 137.011541 35.633804 102.377737 69.0057705 1.838885409 -0.144542 170 32 SH922 922 Glu3 3' flank 26.725575 79.12068 52.9231275 1.723645501 -0.113571 170 33 SH7730 7730 snoRNA cluster1 intergenic 28.892601 105.749023 28.892601 77.856422 53.3745115 1.727333913 0.049455 170 34 SH11210 11210 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2936 2952 30.579884 87.470324 59.025104 1.771036761 -0.002404 170 35 SH9362 9362 RUF1 RUF1 386 402 27.773231 76.383742 52.0784865 1.716658354 -0.005874 170 36 SH11463 11463 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4201 4216 174.240767 239.562184 206.9014755 2.315763588 -0.004356 170 37 SH13258 13258 MT COX1 COX1-ai4 31.693283 120.924039 31.693283 90.230756 60.9620195 1.785059346 -0.002605 170 38 SH3763 3763 Val4 tRNA 41 53 40.505788 95.164811 67.8352995 1.831455747 0.111589 170 39 SH9299 9299 RUF1 RUF1 71 89 27.505595 76.117461 51.811528 1.7144264 -0.020623 170 40 SH10403 10403 RUF8 5' 29.947999 77.778078 53.8630385 1.731290849 0.118062 170 41 SH11017 11017 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1971 1989 1754.471541 1547.432935 1650.952238 3.217734509 -0.012419 170 42 SH16448 16448 YER074W_5_306319_307192_INTRON_4_469 3' exon 32.489779 120.116074 32.489779 88.626295 60.558037 1.782171789 0.058371 170 43 SH9528 9528 RUF3 RUF3 26 40 28.114717 81.079506 54.5971115 1.737169667 -0.042581 170 44 SH13866 13866 MT COB intronic 28.136737 111.80866 28.136737 84.671923 56.40433 1.751312445 -0.084512 170 45 SH10762 10762 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 696 713 34.656994 100.154461 67.4057275 1.8286968 -0.122589 170 46 SH4692 4692 snR4 5' - 13 13 34.470287 99.872884 67.1715855 1.827185599 -0.121489 170 47 SH5081 5081 snR11 snR11 6 25 30.093029 76.947714 53.5203715 1.728519119 0.137911 170 48 SH15357 15357 YBL026W_2_170585_171000_INTRON_55_182 intron 25.892107 104.135157 25.892107 79.24305 52.5675785 1.720717972 -0.175296 170 49 SH18230 18230 YML026C_13_223828_222987_INTRON_48_448 intron 28.218249 119.532673 28.218249 92.314424 60.2663365 1.780074792 -0.19336 170 50 SH14885 14885 MT tRNA Ala 3' 25.946143 101.419784 25.946143 76.473641 51.209892 1.70935386 -0.137145 170 51 SH9055 9055 snR17a / U3a 3' 25.700787 70.083094 47.8919405 1.680262434 -0.071705 170 52 SH4041 4041 SRP RNA SRP RNA 96 113 27.650296 70.379865 49.0150805 1.69032972 0.065045 170 53 SH8895 8895 LSR1 / U2 RNA U2 1116 1134 27.747593 77.584711 52.666152 1.721531588 -0.023234 170 54 SH13774 13774 MT COB intronic 25.954177 97.271642 25.954177 72.317465 49.135821 1.691398217 -0.082927 170 55 SH4752 4752 snR5 5' 26.225927 78.208131 52.217029 1.717812158 -0.138011 170 56 SH19120 19120 YPL031C_16_493033_492014_INTRON_18_119 intron 30.483364 118.658955 30.483364 89.175591 59.8294775 1.77691521 -0.036504 170 57 SH16976 16976 YGR034W_7_555923_556666_INTRON_20_496 intron 39.01822 130.557775 39.01822 92.539555 65.7788875 1.818086524 0.138505 170 58 SH18047 18047 YLR333C_12_796335_795573_INTRON_1_423 intron 27.802464 107.177195 27.802464 80.374731 54.0885975 1.73310572 -0.054884 170 59 SH21571 21571 copy of SH5386 30.183913 87.271166 58.7275395 1.768841806 -0.016322 170 60 SH17753 17753 YKL157W_11_154993_158183_INTRON_282_664 intron 32.390491 115.062896 32.390491 83.672405 58.031448 1.763663407 0.143256 170 61 SH11040 11040 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2086 2101 36368.97444 18496.86284 27432.91864 4.438272015 0.018733 170 62 SH18049 18049 YLR333C_12_796335_795573_INTRON_1_423 intron 41.31723 128.137354 41.31723 87.820124 64.568677 1.810021888 0.293578 170 63 SH18542 18542 YMR230W_13_732413_733140_INTRON_53_462 intron 30.598724 122.64485 30.598724 93.046126 61.822425 1.791146036 -0.097176 170 64 SH13192 13192 MT COX1 Exon4 28.660357 106.965075 28.660357 79.304718 53.9825375 1.732253295 0.015795 170 65 SH1185 1185 His1 3' flank 33.042706 89.640866 61.341786 1.787756417 0.061846 170 66 SH4886 4886 snR8 3' 28.205107 72.074188 50.1396475 1.700181276 0.080477 170 67 SH8235 8235 snoRNA cluster 3; 3' 27.956291 99.316198 27.956291 72.359907 50.158099 1.700341068 0.059616 170 68 SH3312 3312 Thr3 5' flank 27.799884 71.292464 49.546174 1.695010124 0.063073 170 69 SH9107 9107 snR14 / U4 RNA 151-160 + 3' 151 27.82975 84.813868 56.321809 1.750676595 -0.10686 170 70 SH10726 10726 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 516 532 392.844832 520.576657 456.7107445 2.659641229 -0.244292 170 71 SH4230 4230 telomerase RNA telomerase 186 203 25.891151 83.432741 54.661946 1.737685089 -0.226467 170 72 SH18942 18942 YOL127W_15_80347_81189_INTRON_14_427 5' exon 46.485065 158.072656 46.485065 112.587591 79.536328 1.900565537 -0.112691 170 73 SH9878 9878 RUF5-1 RUF5-1 196 210 31.794803 86.525997 59.1604 1.772031102 0.066533 170 74 SH11706 11706 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5416 5429 101.344253 104.965113 103.154683 2.013488949 0.785464 170 75 SH18187 18187 YML024W_13_225889_226697_INTRON_4_401 exon/intron 28.467145 101.256853 28.467145 73.789708 51.1284265 1.708662427 0.075216 170 76 SH14897 14897 MT tRNA Ile tRNA 28.55752 105.853574 28.55752 78.296054 53.426787 1.727759057 0.021839 170 77 SH13254 13254 MT COX1 COX1-ai4 28.825022 113.710691 28.825022 85.885669 57.3553455 1.7585739 -0.053226 170 78 SH3038 3038 Ser2 3' flank 28.923103 84.716681 56.819892 1.754500404 -0.033105 170 79 SH13872 13872 MT COB intronic 26.508741 103.247364 26.508741 77.738623 52.123682 1.717035087 -0.111576 170 80 SH5233 5233 snR30 snR30 16 32 30.895105 74.176948 52.5360265 1.720457222 0.22419 170 81 SH8890 8890 LSR1 / U2 RNA U2 1091 1103 30.690825 88.646333 59.668579 1.775745695 -0.018217 170 82 SH6140 6140 snR39B snR39B 41 57 32.450739 97.617315 65.034027 1.813140647 -0.126706 170 83 SH11899 11899 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6381 6394 24746.98346 17392.74301 21069.86324 4.323661717 -0.387069 170 84 SH7961 7961 snoRNA cluster 2 5' 27.700084 102.864026 27.700084 76.163942 51.932013 1.715435157 -0.007958 170 85 SH11249 11249 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3131 3148 10351.13542 10983.51214 10667.32378 4.028055477 -0.798057 170 86 SH5557 5557 snR33 snR33 71 88 27.168825 76.272043 51.720434 1.713662161 -0.045934 170 87 SH430 430 Asp1 5' flank 27.473939 85.196211 56.335075 1.750778877 -0.135608 170 88 SH18021 18021 YLR306W_12_744151_744851_INTRON_4_137 intron 27.275026 102.541484 27.275026 76.266458 51.770742 1.71408439 -0.038441 170 89 SH7649 7649 snoRNA cluster1 5' 27.078699 98.310081 27.078699 72.231382 49.6550405 1.69596334 -0.000101 170 90 SH18372 18372 YMR079W_13_424988_426058_INTRON_10_165 intron 28.188918 97.98016 28.188918 70.791242 49.49008 1.694518156 0.096606 170 91 SH14784 14784 MT ORF11; tRNA Leu; tRNA Gln 3' 27.056169 94.226691 27.056169 68.170522 47.6133455 1.677728698 0.05382 170 92 SH9213 9213 snR6 / U6 RNA 5' 27.50415 89.188453 58.3463015 1.766013332 -0.179388 170 93 SH7677 7677 snoRNA cluster1 snR78/intergenic 25.461593 92.271945 25.461593 67.810352 46.6359725 1.668721038 -0.057632 170 94 SH17088 17088 YHL001W_8_104270_105084_INTRON_130_527 intron 32.601014 175.188882 32.601014 143.587868 88.094441 1.944948504 -0.911712 170 95 SH13738 13738 MT COB Exon1 28.387148 154.841177 28.387148 127.454029 77.9205885 1.891652224 -0.783497 170 96 SH14396 14396 MT 21S rRNA 21S rRNA3 180.462911 443.725147 180.462911 264.262236 222.3625735 2.347061692 -0.124488 170 97 SH9382 9382 RUF1 RUF1 486 502 67.950894 159.893103 113.9219985 2.056607595 -0.406292 170 98 SH15517 15517 YBR048W_2_332790_333771_INTRON_46_556 intron 39.101568 137.572735 39.101568 99.471167 69.2863675 1.840647793 -0.008727 170 99 SH20378 20378 YFL034C-A spliced 83.643254 121.48477 102.564012 2.010995001 0.31468 170 100 SH19042 19042 YOR234C_15_779404_778554_INTRON_20_546 intron 39.107867 128.159241 39.107867 90.051374 64.5796205 1.810095489 0.196609 170 101 SH16652 16652 YFR031C-A_6_221405_220494_INTRON_5_151 intron 29.465758 108.346211 29.465758 79.880453 54.6731055 1.737773743 0.060771 170 102 SH20152 20152 YDL125C spliced 28.646899 86.951349 57.799124 1.761921256 -0.080593 170 103 SH5548 5548 snR33 snR33 26 43 28.731301 81.946866 55.3390835 1.743031962 -0.01236 170 104 SH8835 8835 LSR1 / U2 RNA U2 816 828 31.021199 81.602178 56.3116885 1.75059855 0.124201 171 2 SH6795 6795 snR50 3' 28.893508 78.338206 53.615857 1.729293252 0.043338 171 3 SH4570 4570 U3b (snR17b) U3b 406 422 28.867394 77.555543 53.2114685 1.726005245 0.051688 171 4 SH13889 13889 MT COB intronic 26.37189 96.471876 26.37189 71.099986 48.735938 1.687849329 -0.035887 171 5 SH8482 8482 snR19 / U1 RNA 5' 30.440976 86.061681 58.2513285 1.765305834 0.016618 171 6 SH20745 20745 YJL205C-A spliced 25.710269 75.63727 50.6737695 1.704783212 -0.14418 171 7 SH20538 20538 YGR183C spliced 27.617545 61.917954 44.7677495 1.650965263 0.186673 171 8 SH19401 19401 YPR063C_16_678315_677807_INTRON_42_127 intron 31.600255 112.508241 31.600255 81.907986 56.7541205 1.753997398 0.143167 171 9 SH10423 10423 RUF8 RUF8 41 58 28.962763 67.848452 48.4056075 1.684895675 0.189504 171 10 SH19703 19703 Negative Control 26.243758 70.950899 48.5973285 1.686612396 -0.043252 171 11 SH11118 11118 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2476 2492 58.371968 99.762181 79.0670745 1.89799567 0.331627 171 12 SH9642 9642 RUF4 5' - 1 -14 1 36.193904 80.775801 58.4848525 1.767043399 0.346357 171 13 SH11019 11019 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1981 1998 50.97515 90.83127 70.90321 1.850665897 0.40025 171 14 SH21864 21864 copy of SH19499 32.071875 81.718729 56.895302 1.755076407 0.166574 171 15 SH6656 6656 snR48 106-113 + 3' 106 27.220172 58.99617 43.108171 1.634559597 0.208706 171 16 SH14386 14386 MT 21S rRNA 5' 26.158979 104.187627 26.158979 79.028648 52.5938135 1.720934662 -0.152948 171 17 SH16029 16029 YDL191W_4_117665_118518_INTRON_4_494 exon/intron 28.601712 98.128 28.601712 70.526288 49.564 1.695166348 0.128201 171 18 SH11129 11129 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2531 2544 4544.553868 3617.416775 4080.985322 3.610765033 -0.112064 171 19 SH3600 3600 Val1 5' flank - tRNA12 12 44.576451 102.354769 73.46561 1.866084089 0.043023 171 20 SH2316 2316 Phe3 5' flank 31.102144 92.188989 61.6455665 1.789901848 -0.061018 171 21 SH3910 3910 RNase MRP 5' 26.87363 61.106524 43.990077 1.643354722 0.14904 171 22 SH5800 5800 snR35 snR35 186 208 30.851928 90.861434 60.856681 1.784308263 -0.049391 171 23 SH18665 18665 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.476533 109.352177 28.476533 81.875644 55.1760885 1.74175091 -0.028271 171 24 SH17024 17024 YGR148C_7_788173_787307_INTRON_1_392 intron 26.5983 94.596691 26.5983 68.998391 47.7983455 1.679412864 0.009367 171 25 SH3876 3876 RNaseP RNaseP 346 360 31.275921 87.940551 59.608236 1.77530627 0.019425 171 26 SH1637 1637 Leu5 tRNA-intron 51 67 27.070136 84.437402 55.753769 1.746274231 -0.154549 171 27 SH9556 9556 RUF3 RUF3 166 178 5257.472115 3373.312414 4315.392265 3.635020279 0.188252 171 28 SH8746 8746 LSR1 / U2 RNA U2 371 387 39.615 83.814046 61.714523 1.790387377 0.353382 171 29 SH10135 10135 RUF6 RUF6 521 536 29.537901 88.563996 59.0509485 1.771226878 -0.068027 171 30 SH20108 20108 YDL064W spliced 31.692071 84.552225 58.122148 1.764341656 0.097899 171 31 SH3325 3325 Thr3 5' flank 31.199781 82.516425 56.858103 1.754792366 0.114648 171 32 SH246 246 Arg3 3' flank 31.348994 87.181946 59.26547 1.772801733 0.035951 171 33 SH10892 10892 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1346 1361 32472.99901 21870.57605 27171.78753 4.43411821 -0.393821 171 34 SH13527 13527 MT COX1 intronic 31.062085 104.683712 31.062085 74.621627 52.841856 1.722978063 0.228362 171 35 SH20147 20147 YDL115C spliced 29.367792 84.756485 57.0621385 1.756348044 -0.007778 171 36 SH15931 15931 YDL108W_4_267697_268698_INTRON_29_109 3' exon 29.264848 100.359703 29.264848 72.094855 50.6798515 1.704835334 0.150553 171 37 SH9921 9921 RUF5-1 RUF5-1 411 429 29.488203 83.368021 56.428112 1.75149552 0.01942 171 38 SH20864 20864 YLR093C spliced 27.613724 81.456497 54.5351105 1.736676197 -0.081104 171 39 SH20679 20679 YIL106W spliced 32.300184 87.357215 59.8286995 1.776909563 0.07285 171 40 SH3885 3885 RNaseP 3' 28.071308 71.557173 49.8142405 1.697353513 0.078228 171 41 SH15823 15823 YDL064W_4_337486_338069_INTRON_39_148 intron 30.516086 118.637353 30.516086 89.121267 59.8186765 1.7768368 -0.034125 171 42 SH1530 1530 Leu3 3' flank 28.463481 67.519067 47.991274 1.681162279 0.160685 171 43 SH16513 16513 YER117W_5_396765_397649_INTRON_43_513 intron 28.563696 112.607584 28.563696 85.043888 56.803792 1.754377328 -0.060525 171 44 SH9688 9688 RUF4 RUF4 216 232 30.770361 85.682275 58.226318 1.765119328 0.037857 171 45 SH19473 19473 ADH1 28.326986 81.369821 54.8484035 1.739163991 -0.031987 171 46 SH16997 16997 YGR118W_7_726968_727725_INTRON_66_385 intron 30.342488 104.722275 30.342488 75.379787 52.8611375 1.723136504 0.174078 171 47 SH14204 14204 MT COB 3' 28.124011 101.022198 28.124011 73.898187 51.011099 1.70766468 0.050896 171 48 SH12368 12368 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.380302 112.358997 30.380302 82.978695 56.6794985 1.753425999 0.070382 171 49 SH747 747 Gln4 tRNA 6 23 34.705237 80.897867 57.801552 1.7619395 0.287808 171 50 SH18196 18196 YML024W_13_225889_226697_INTRON_4_401 intron 32.312187 118.212922 32.312187 86.900735 59.606461 1.775293337 0.081452 171 51 SH20873 20873 YLR185W spliced 48.148452 113.602063 80.8752575 1.907815676 -0.099161 171 52 SH10780 10780 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 786 806 28.136487 82.758832 55.4476595 1.743883219 -0.061648 171 53 SH1269 1269 Ile2 tRNA-intron 41 57 28.259977 79.041163 53.65057 1.72957434 -0.007379 171 54 SH11841 11841 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6091 6104 142.438821 192.868716 167.6537685 2.22441332 0.116267 171 55 SH21580 21580 copy of SH5869 35.239946 91.317829 63.2788875 1.801258835 0.079235 171 56 SH10102 10102 RUF6 RUF6 356 374 28.407732 74.024795 51.2162635 1.709407891 0.068095 171 57 SH20696 20696 YIL148W spliced 28.234356 73.83836 51.036358 1.707879675 0.059085 171 58 SH1838 1838 Leu9 5' flank 30.367881 89.257652 59.8127665 1.77679389 -0.043007 171 59 SH5294 5294 snR30 snR30 321 333 7372.551125 6096.329141 6734.440133 3.828301497 -0.308705 171 60 SH343 343 Arg5 tRNA 51 63 32.287526 89.815232 61.051379 1.785695478 0.029398 171 61 SH9911 9911 RUF5-1 RUF5-1 361 378 27.563913 78.522901 53.043407 1.724631411 -0.047782 171 62 SH14630 14630 MT 21S rRNA Sce1 endonuc 27.678808 100.230427 27.678808 73.551619 50.6152135 1.704281073 0.024731 171 63 SH9155 9155 snR7 U5 RNA U5 46 62 28.222403 71.950628 50.0865155 1.699720819 0.083304 171 64 SH21060 21060 YMR194W spliced 30.940576 83.316095 57.1283355 1.756851571 0.088563 171 65 SH11679 11679 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5281 5294 55.55383 99.176915 77.3653725 1.888546621 0.299155 171 66 SH21004 21004 YML094W spliced 30.701303 92.181843 61.441573 1.788462326 -0.07826 171 67 SH8919 8919 LSR1 / U2 RNA 3' 30.523348 82.450245 56.4867965 1.751946946 0.086552 171 68 SH5013 5013 snR10 snR10 96 117 28.223593 72.782058 50.5028255 1.703315676 0.07236 171 69 SH14415 14415 MT 21S rRNA 21S rRNA3 150.345376 382.238128 150.345376 232.892752 191.619064 2.282438714 -0.136565 171 70 SH8237 8237 snoRNA cluster 3; 3' 28.406485 91.877388 28.406485 64.470903 46.438694 1.666879998 0.201154 171 71 SH8456 8456 snoRNA cluster 5 snR128 32.999701 109.903104 32.999701 77.903403 55.451552 1.743913706 0.27871 171 72 SH8283 8283 snoRNA cluster4 intergenic 26.256182 100.980837 26.256182 75.724655 50.9904185 1.707488576 -0.104825 171 73 SH4522 4522 U3b (snR17b) U3b 166 181 28.560292 75.886573 52.2234325 1.717865413 0.053317 171 74 SH6742 6742 snR49 3' 26.226047 72.770421 49.498234 1.694589704 -0.06885 171 75 SH9774 9774 RUF4 RUF4 646 663 32.617223 88.426989 60.522106 1.781914032 0.067094 171 76 SH20521 20521 YGR034W spliced 32.461974 78.047209 55.2545915 1.742368372 0.253868 171 77 SH10523 10523 RUF8 RUF8 541 560 28.244969 78.335533 53.290251 1.726647766 0.000598 171 78 SH6585 6585 snR47 snR47 31 48 28.563361 80.639609 54.601485 1.737204454 -0.007305 171 79 SH18485 18485 YMR194W_13_651144_651909_INTRON_17_479 intron 35.528116 132.945104 35.528116 98.416988 66.972552 1.825896848 -0.065834 171 80 SH685 685 Gln3 5' flank 30.810234 74.145628 52.477931 1.719976704 0.21943 171 81 SH15855 15855 YDL079C_4_314747_312950_INTRON_413_704 5' exon 28.371128 111.774534 28.371128 84.403406 56.387267 1.751181046 -0.065701 171 82 SH11591 11591 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4841 4854 30.157519 77.766863 53.962191 1.732089575 0.131342 171 83 SH10495 10495 RUF8 RUF8 401 417 31.450372 94.589223 63.0197975 1.799477003 -0.089481 171 84 SH7037 7037 snR62 5' 30.342092 86.747777 58.5449345 1.767489324 -0.000021 171 85 SH20787 20787 YKL081W spliced 44.755897 97.128192 70.9420445 1.8509037 0.152776 171 86 SH1552 1552 Leu4 5' flank 28.442042 80.041341 54.2416915 1.734333224 -0.007869 171 87 SH609 609 Gln1 3' flank 26.758852 74.554675 50.6567635 1.704637439 -0.053362 171 88 SH18856 18856 YNR053C_14_723108_721117_INTRON_811_1341 intron 26.564955 95.29231 26.564955 69.727355 48.146155 1.68256161 -0.003133 171 89 SH20578 20578 YHR016C spliced 30.628839 90.638014 60.6334265 1.782712112 -0.055295 171 90 SH18690 18690 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.806784 127.320279 29.806784 98.513495 64.1601395 1.8072653 -0.220602 171 91 SH21322 21322 YPR028W spliced 28.69069 87.087704 57.889197 1.762597525 -0.080973 171 92 SH4939 4939 snR9 snR9 101 120 27.964295 66.926173 47.445234 1.676192593 0.135075 171 93 SH4233 4233 telomerase RNA telomerase 201 213 41.015323 110.497941 75.756632 1.879420658 -0.183609 171 94 SH2328 2328 Phe3 5' flank 38.066747 80.842542 59.4546445 1.774185787 0.392608 171 95 SH10997 10997 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1871 1888 22171.67715 14135.24578 18153.46146 4.258959448 -0.20299 171 96 SH8353 8353 snoRNA cluster4 3' 36.778464 113.934983 36.778464 78.156519 57.4674915 1.75942224 0.418795 171 97 SH16107 16107 YDR064W_4_579453_580447_INTRON_22_560 intron 27.035026 100.725903 27.035026 74.690877 50.8629515 1.706401558 -0.03534 171 98 SH11878 11878 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6276 6292 56.573516 104.074861 80.3241885 1.904846347 0.219362 171 99 SH797 797 Glu1 tRNA 1 17 1205.823341 903.559537 1054.691439 3.023125421 0.336293 171 100 SH10547 10547 RUF8 RUF8 661 682 28.162512 73.158453 50.6604825 1.704669322 0.063238 171 101 SH2715 2715 Pro5 5' flank 28.696152 71.234457 49.9653045 1.698668538 0.124962 171 102 SH11319 11319 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3481 3498 11244.70519 7703.217532 9473.961362 3.976531609 -0.128963 171 103 SH8086 8086 snoRNA cluster 2 3' 28.792562 106.861004 28.792562 79.068442 53.930502 1.731834463 0.027454 171 104 SH14769 14769 MT ORF11; tRNA Leu; tRNA Gln orf11 / tRNA Leu 31.073049 103.009948 31.073049 72.936899 52.004974 1.716044884 0.25189 172 2 SH15997 15997 YDL137W_4_216158_217074_INTRON_1_332 5' exon 31.102558 129.477068 31.102558 99.37451 65.238534 1.814504193 -0.199203 172 3 SH6467 6467 snR45 3' 28.798885 72.155438 50.4771615 1.703094925 0.11947 172 4 SH7256 7256 snR65 snR65 56 75 28.813684 85.009982 56.911833 1.755202573 -0.043707 172 5 SH2542 2542 Pro2 5' flank 28.6463 81.198721 54.9225105 1.739750381 -0.008759 172 6 SH16290 16290 YDR450W_4_1359912_1360787_INTRON_48_482 intron 32.754537 131.333453 32.754537 99.578916 66.1667265 1.820639649 -0.159143 172 7 SH6322 6322 snR42 3' 29.979368 91.749702 60.864535 1.784364308 -0.102839 172 8 SH3130 3130 Ser4 tRNA 56 72 36.086462 106.066777 71.0766195 1.851726764 -0.207172 172 9 SH8359 8359 snoRNA cluster4 3' 24.803026 110.699636 24.803026 86.89661 55.849818 1.747021762 -0.348093 172 10 SH21467 21467 copy of SH1003 49.374721 137.788391 93.581556 1.971190262 -0.453903 172 11 SH1809 1809 Leu8 tRNA 71 85 1402.614281 1966.30389 1684.459086 3.226460467 -0.682948 172 12 SH1325 1325 Ile3 tRNA 6 22 36.086801 111.12158 73.6041905 1.866902541 -0.303192 172 13 SH13746 13746 MT COB Exon1 25.834893 109.991161 25.834893 85.156268 55.4955805 1.744258399 -0.251038 172 14 SH125 125 Arg1 1-13 1 13 48.051019 144.020385 96.035702 1.982432715 -0.565352 172 15 SH15545 15545 YBR078W_2_393082_394818_INTRON_59_388 intron 29.674402 159.104293 29.674402 130.429891 80.0521465 1.903372981 -0.794615 172 16 SH4823 4823 snR5 3' 28.603412 67.929003 48.2662075 1.683643176 0.164321 172 17 SH2378 2378 Phe4 5' flank 26.746483 72.03057 49.3885265 1.693626069 -0.021203 172 18 SH4302 4302 telomerase RNA telomerase 546 565 28.500256 80.124339 54.3122975 1.734898175 -0.005054 172 19 SH18161 18161 YLR448W_12_1028848_1029762_INTRON_16_399 5' exon 36.706434 151.320007 36.706434 115.613573 76.1600035 1.881726955 -0.370534 172 20 SH15064 15064 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.509136 100.588886 27.509136 74.07975 50.794443 1.705816202 0.006024 172 21 SH12580 12580 MT_15S MT_15S 73.135727 211.921418 73.135727 139.785691 106.460709 2.027189354 -0.083693 172 22 SH9045 9045 snR17a / U3a 3' 27.117008 75.419762 51.268385 1.709849637 -0.038827 172 23 SH2820 2820 Pro7 5' flank 26.917805 73.518643 50.218224 1.70086135 -0.028528 172 24 SH9643 9643 RUF4 5' - 5 -9 5 37.877926 91.679907 64.7789165 1.81143368 0.132901 172 25 SH5104 5104 snR11 snR11 121 139 25.182113 77.845619 51.513866 1.711924144 -0.211768 172 26 SH7397 7397 snR68 3' 27.153191 90.655369 58.90428 1.770146852 -0.219918 172 27 SH937 937 Gly1 5' flank 30.791796 75.9865 53.389148 1.72745299 0.193748 172 28 SH11885 11885 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6311 6324 41.439861 92.598755 67.019308 1.826199939 0.186727 172 29 SH11601 11601 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4891 4911 2294.78613 1852.207589 2073.49686 3.316703382 0.056495 172 30 SH19426 19426 YPR132W_16_794960_795762_INTRON_66_430 intron 26.285795 108.221419 26.285795 82.935624 54.6107095 1.737277819 -0.191981 172 31 SH21009 21009 YML124C spliced 29.197902 73.569118 51.38351 1.710823768 0.12597 172 32 SH6545 6545 snR46 3' 27.774548 85.628804 56.701676 1.753595896 -0.120175 172 33 SH614 614 Gln1 3' flank 25.497889 69.339202 47.4185455 1.675948228 -0.076729 172 34 SH15347 15347 YBL018C_2_186436_185960_INTRON_48_122 intron 28.73994 114.209891 28.73994 86.469951 57.6049455 1.76045977 -0.067665 172 35 SH16443 16443 YER074W_5_306319_307192_INTRON_4_469 intron 28.507852 111.518385 28.507852 84.010533 56.2591925 1.750193494 -0.051972 172 36 SH19932 19932 YBL026W spliced 40.102512 104.057281 72.0798965 1.857814154 -0.080901 172 37 SH7181 7181 snR64 5' 291.211093 345.259845 318.235469 2.502748582 0.036201 172 38 SH1758 1758 Leu7 3' flank 25.717381 66.774156 46.2457685 1.665072001 -0.0233 172 39 SH5341 5341 snR30 snR30 556 572 28.121423 85.242777 56.6821 1.753445932 -0.092266 172 40 SH20782 20782 YKL006W spliced 30.379042 91.20305 60.791046 1.783839616 -0.07587 172 41 SH21238 21238 YOR293W spliced 30.420458 79.024668 54.722563 1.73816643 0.131635 172 42 SH10238 10238 RUF6 1036-1051 + 3' 1036 26.06148 77.769221 51.9153505 1.71529579 -0.144724 172 43 SH15845 15845 YDL075W_4_322225_322987_INTRON_58_478 intron 28.367183 114.28179 28.367183 86.914607 57.640895 1.760730716 -0.095317 172 44 SH10205 10205 RUF6 RUF6 871 893 28.457196 83.191969 55.8245825 1.746825484 -0.04552 172 45 SH17991 17991 YLR287C-A_12_713158_712537_INTRON_4_433 5' exon 28.37141 110.189172 28.37141 82.817762 55.594586 1.7450325 -0.046694 172 46 SH4879 4879 snR8 176-190 + 3' 176 28.132753 80.833724 54.4832385 1.736262914 -0.038333 172 47 SH8838 8838 LSR1 / U2 RNA U2 831 848 32.463094 85.832407 59.1477505 1.771938232 0.106824 172 48 SH5857 5857 snR35 snR35 471 488 27.958622 83.370904 55.664763 1.745580364 -0.080974 172 49 SH7935 7935 snoRNA cluster1 snR72/3' 27.857396 104.814852 27.857396 77.957456 52.907426 1.723516633 -0.020591 172 50 SH18212 18212 YML025C_13_225365_224406_INTRON_28_126 exon/intron 27.936917 101.964144 27.936917 75.027227 51.482072 1.711656018 0.023139 172 51 SH17622 17622 YJR094W-A_10_608000_608553_INTRON_3_277 exon/intron 28.265202 120.9069 28.265202 93.641698 60.95345 1.784998292 -0.213219 172 52 SH15270 15270 MT 9S rRNA 9S 26.29399 99.764332 26.29399 74.470342 50.382166 1.702276834 -0.086026 172 53 SH15654 15654 YBR189W_2_604466_605466_INTRON_8_420 intron 32.83007 116.174991 32.83007 84.344921 58.5874955 1.767804933 0.148913 172 54 SH2860 2860 Pro7 3' flank 32.510027 85.843104 59.1765655 1.772149756 0.108565 172 55 SH4386 4386 telomerase RNA telomerase 966 985 28.202827 94.853776 61.5283015 1.789074926 -0.236071 172 56 SH13579 13579 MT COX1 Exon 6 26.267376 103.3487 26.267376 78.081324 52.17435 1.717457047 -0.133412 172 57 SH11575 11575 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4761 4778 30.821806 89.022559 59.9221825 1.777587623 -0.019069 172 58 SH14134 14134 MT COB intronic 28.540608 96.552516 28.540608 69.011908 48.776258 1.688208479 0.144912 172 59 SH16487 16487 YER102W_5_362729_363698_INTRON_1_360 intron 28.409744 110.908169 28.409744 83.498425 55.9540845 1.747831794 -0.052345 172 60 SH12865 12865 MT COX1 COX1ai1 30.184947 119.299811 30.184947 90.114864 60.1499055 1.779234949 -0.06588 172 61 SH21155 21155 YNL265C spliced 29.555567 92.93129 61.2434285 1.787059495 -0.14169 172 62 SH17709 17709 YKL081W_11_282533_284097_INTRON_206_531 intron 29.471744 120.759035 29.471744 92.287291 60.8795175 1.784471202 -0.134734 172 63 SH16585 16585 YFL034C-A_6_64931_64242_INTRON_13_333 intron 25.74812 100.251345 25.74812 75.503225 50.6256725 1.704370805 -0.139645 172 64 SH16536 16536 YER131W_5_423587_424307_INTRON_1_361 intron 28.602705 99.778903 28.602705 72.176198 50.3894515 1.702339631 0.106078 172 65 SH10381 10381 RUF7 3' 26.461276 79.0214 52.741338 1.722151143 -0.13104 172 66 SH11617 11617 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4971 4986 16814.54534 11637.20884 14225.87709 4.153079052 -0.256671 172 67 SH16886 16886 YGL189C_7_148970_148233_INTRON_1_368 intron 30.486634 115.239901 30.486634 85.753267 58.1199505 1.764325236 0.024178 172 68 SH3480 3480 Tyr1 5' flank 28.263652 87.197664 57.730658 1.761406508 -0.105462 172 69 SH15657 15657 YBR189W_2_604466_605466_INTRON_8_420 intron 38.739039 135.956654 38.739039 98.217615 68.478327 1.835553142 0.009768 172 70 SH2649 2649 Pro4 5' flank 30.953969 87.757058 59.3555135 1.773461067 0.008807 172 71 SH6492 6492 snR46 5' 26.516002 73.253636 49.884819 1.697968401 -0.054026 172 72 SH14605 14605 MT 21S rRNA Sce1 endonuc 27.627675 119.951983 27.627675 93.324308 60.4759915 1.781582997 -0.238501 172 73 SH1944 1944 Lys2 5' flank 28.753515 79.084337 53.918926 1.731741233 0.024696 172 74 SH18506 18506 YMR194W_13_651144_651909_INTRON_17_479 intron 35.244894 128.727324 35.244894 94.48243 64.863662 1.812001464 0.010175 172 75 SH3552 3552 Tyr2 tRNA-exon/intron 31 50 29.911677 90.821078 60.3663775 1.780795115 -0.090128 172 76 SH1861 1861 Leu9 tRNA-intron/exon 46 63 29.236525 80.344567 54.790546 1.738705628 0.040255 172 77 SH18099 18099 YLR367W_12_855877_857316_INTRON_698_1180 intron 52.908814 173.626521 52.908814 121.717707 87.3132605 1.941080206 -0.14815 172 78 SH2041 2041 Lys3 3' flank 27.787379 89.713351 58.750365 1.769010569 -0.169741 172 79 SH20691 20691 YIL133C spliced 69.148626 114.306836 91.727731 1.962500651 0.23223 172 80 SH19369 19369 YPR028W_16_623522_624197_INTRON_52_184 intron/exon 28.364888 115.932433 28.364888 88.567545 58.4662165 1.76690499 -0.122325 172 81 SH14219 14219 MT ATP9 ATP9 30.42737 113.960415 30.42737 84.533045 57.4802075 1.759518327 0.043744 172 82 SH6009 6009 snR37 5' 27.853667 71.83991 49.8467885 1.697637183 0.059455 172 83 SH14800 14800 "MT tRNAs (Lys, Arg1, Gly)" intergenic 27.118666 96.934687 27.118666 70.816021 48.9673435 1.689906544 0.021729 172 84 SH13680 13680 MT ORF 5 (hypothetical) 5' 24.022452 96.604068 24.022452 73.581616 48.802034 1.688437923 -0.248505 172 85 SH14294 14294 MT VAR1 includes 5’ processing site VAR1 35.76546 125.291286 35.76546 90.525826 63.145643 1.80034339 0.109576 172 86 SH5598 5598 snR34 5' 31.994109 88.602017 60.298063 1.780303361 0.038219 172 87 SH10344 10344 RUF7 RUF7 331 350 26.001993 72.795137 49.398565 1.693714333 -0.0857 172 88 SH6360 6360 snR43 snR43 41 53 44.494767 104.381972 74.4383695 1.871796852 0.001672 172 89 SH11088 11088 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2326 2342 44.602896 95.36236 69.982628 1.844990247 0.187056 172 90 SH13734 13734 MT COB Exon1 26.328902 94.426146 26.328902 69.097244 47.713073 1.678637389 -0.011611 172 91 SH11099 11099 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2381 2396 36.928463 89.126613 63.027538 1.799530343 0.168559 172 92 SH8749 8749 LSR1 / U2 RNA U2 386 400 32.08208 74.413325 53.2477025 1.726300874 0.292038 172 93 SH18792 18792 YNL301C_14_64561_63569_INTRON_113_544 intron 27.28547 138.558651 27.28547 112.273181 69.7793255 1.843726767 -0.558939 172 94 SH1693 1693 Leu6 tRNA 31 43 37.006342 105.009184 71.007763 1.851305831 -0.165792 172 95 SH12003 12003 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6901 6921 27.021306 91.292123 59.1567145 1.772004046 -0.2361 172 96 SH19598 19598 AEP2/ATP13 2.1 27.219661 85.922519 56.57109 1.752594547 -0.161627 172 97 SH3385 3385 Thr4 tRNA 11 25 31.884803 75.740552 53.8126775 1.730884601 0.262716 172 98 SH13894 13894 MT COB intronic 121.498651 300.826057 121.498651 180.327406 150.9130285 2.178726735 0.04108 172 99 SH484 484 Asp2 5' flank 32.373677 84.210878 58.2922775 1.765611024 0.132637 172 100 SH13863 13863 MT COB cytbi2/intronic 26.407669 103.165449 26.407669 77.75778 52.0827245 1.716693695 -0.119169 172 101 SH12964 12964 MT COX1 COX1ai2 26.748898 101.869712 26.748898 76.120814 51.434856 1.711257528 -0.074027 172 102 SH3102 3102 Ser4 5' flank 33.618096 84.758793 59.1884445 1.772236927 0.173088 172 103 SH15622 15622 YBR181C_2_592732_591670_INTRON_7_358 intron 28.751387 104.862273 28.751387 77.110886 52.9311365 1.723711219 0.049858 172 104 SH11574 11574 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4756 4773 68.876791 99.760056 84.3184235 1.925922478 0.487359 173 2 SH16111 16111 YDR064W_4_579453_580447_INTRON_22_560 intron 28.430975 105.155392 28.430975 77.724417 53.077696 1.724912063 0.020807 173 3 SH16933 16933 YGR027C_7_534779_534126_INTRON_1_312 5' exon 37.679657 128.791632 37.679657 92.111975 64.895816 1.812216698 0.118868 173 4 SH4404 4404 telomerase RNA telomerase 1056 1072 30.894458 89.21276 60.053609 1.778539112 -0.019219 173 5 SH14697 14697 MT tRNA thr2 5' 26.389937 99.901827 26.389937 74.51189 50.4509135 1.702869034 -0.079547 173 6 SH9755 9755 RUF4 RUF4 551 563 30.536594 90.765035 60.6508145 1.782836638 -0.061499 173 7 SH11489 11489 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4331 4348 132.127459 143.875631 138.001545 2.139883949 0.525221 173 8 SH12842 12842 MT COX1 COX1ai1 27.510594 117.521578 27.510594 91.010984 59.260789 1.772767429 -0.205355 173 9 SH4942 4942 snR9 snR9 116 133 29.561954 92.162347 60.8621505 1.784347294 -0.128548 173 10 SH14007 14007 MT COB intronic 25.057437 111.504826 25.057437 87.447389 56.252413 1.750141157 -0.335191 173 11 SH5167 5167 snR13 5' - 7 -9 7 58.544565 128.256892 93.4007285 1.970350264 -0.150974 173 12 SH2312 2312 Phe2 3' flank 29.199542 89.117185 59.1583635 1.772016152 -0.09308 173 13 SH9319 9319 RUF1 RUF1 171 190 27.227331 73.991991 50.609661 1.704233428 -0.012668 173 14 SH5579 5579 snR33 181-183 + 3' 181 25.325953 88.965825 57.145889 1.756984993 -0.332344 173 15 SH18136 18136 YLR406C_12_931752_931062_INTRON_58_406 intron 32.4015 138.673599 32.4015 107.272099 69.8367995 1.844084328 -0.319523 173 16 SH5528 5528 snR33 5' 33.258294 141.987423 87.6228585 1.942617417 -0.871869 173 17 SH9334 9334 RUF1 RUF1 246 263 29.240977 69.095447 49.168212 1.691684415 0.190438 173 18 SH9066 9066 snR14 / U4 RNA 5' 29.180682 75.226001 52.2033415 1.717698303 0.10256 173 19 SH14671 14671 MT 21S rRNA 21S rRNA4 26.521295 97.095463 26.521295 71.574168 49.0477315 1.690618926 -0.031386 173 20 SH6681 6681 snR49 5' 26.129868 91.16118 58.645524 1.768234871 -0.297871 173 21 SH16306 16306 YDR450W_4_1359912_1360787_INTRON_48_482 intron 34.641445 124.446011 34.641445 90.804566 62.7230055 1.79742686 0.07604 173 22 SH21245 21245 YPL031C spliced 55.403676 84.033274 69.718475 1.843347879 0.629435 173 23 SH17903 17903 YLR061W_12_263195_263949_INTRON_13_401 intron 29.386958 113.578233 29.386958 85.191275 57.2891165 1.758072125 -0.014821 173 24 SH5540 5540 snR33 5' - 8 -14 8 29.53886 90.948937 60.2438985 1.779913068 -0.109091 173 25 SH367 367 Asn1 5' flank 27.586591 82.648492 55.1175415 1.741289838 -0.097501 173 26 SH12336 12336 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.841407 121.19345 32.841407 89.352043 61.096725 1.786017931 0.060162 173 27 SH3747 3747 Val4 5' flank 31.248963 89.289931 60.269447 1.780097207 -0.005286 173 28 SH15033 15033 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.901224 110.609359 26.901224 84.708135 55.8046795 1.746670618 -0.169548 173 29 SH14627 14627 MT 21S rRNA Sce1 endonuc 27.586784 107.657572 27.586784 81.070788 54.328786 1.735030001 -0.078191 173 30 SH17402 17402 YIL069C_9_232366_231550_INTRON_4_412 intron 28.628242 95.330646 28.628242 67.702404 48.165323 1.682734477 0.169199 173 31 SH6902 6902 snR56 3' 26.877342 81.742906 54.310124 1.734880794 -0.135546 173 32 SH11943 11943 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6601 6619 235.087203 280.464187 257.775695 2.411241966 0.104883 173 33 SH11311 11311 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2/25S 3441 3459 261.14259 329.728629 295.4356095 2.470462841 -0.026921 173 34 SH4841 4841 snR8 5' 49.525741 103.54505 76.5353955 1.883862331 0.1107 173 35 SH5908 5908 snR36 5' - 11 -4 11 52.58198 120.355148 86.468564 1.936858247 -0.13223 173 36 SH20576 20576 YHR012W spliced 24.58714 83.243769 53.9154545 1.731713271 -0.322151 173 37 SH5102 5102 snR11 snR11 111 127 78.972689 169.410012 124.1913505 2.09409135 -0.346771 173 38 SH21798 21798 copy of SH14863 27.603598 85.173754 56.388676 1.751191898 -0.126473 173 39 SH5112 5112 snR11 snR11 161 183 29.924436 71.013696 50.469066 1.703025268 0.207676 173 40 SH10891 10891 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1341 1358 28379.20559 20518.04704 24448.62631 4.388254463 -0.469111 173 41 SH20694 20694 YIL148W spliced 31.05393 94.820092 62.937011 1.798906114 -0.106628 173 42 SH2474 2474 Phe5 3' flank 30.082848 82.375077 56.2289625 1.74996007 0.068507 173 43 SH16663 16663 YFR032C-A_6_223758_223245_INTRON_1_331 intron 46.025998 153.4093 46.025998 108.383302 77.20465 1.887643458 -0.045627 173 44 SH2581 2581 Pro2 3' flank 28.197582 67.966169 48.0818755 1.6819814 0.136277 173 45 SH5956 5956 snR36 snR36 236 254 28.094925 71.988239 50.041582 1.699331031 0.074084 173 46 SH9947 9947 RUF5-1 RUF5-1 541 556 29.977054 87.718752 58.847903 1.769730992 -0.03344 173 47 SH2282 2282 Phe2 tRNA 6 22 99.65275 178.691494 139.172122 2.143552249 -0.176631 173 48 SH4656 4656 snR3 3' 27.741768 74.00266 50.872214 1.706480639 0.02324 173 49 SH10404 10404 RUF8 5' 41.220957 100.041788 70.6313725 1.848997645 0.022903 173 50 SH19297 19297 YPL198W_16_173151_174701_INTRON_12_420 5' exon 28.21149 103.886801 28.21149 76.675311 52.4434005 1.719690844 0.019811 173 51 SH3758 3758 Val4 tRNA 16 30 28.754128 78.85818 53.806154 1.73083195 0.027603 173 52 SH11648 11648 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5126 5144 28.937405 84.133508 56.5354565 1.752320903 -0.025258 173 53 SH14731 14731 MT tRNA cys; tRNA his tRNA his 26.265321 99.25994 26.265321 73.994619 50.12997 1.700097445 -0.081977 173 54 SH5493 5493 snR32 snR32 126 138 40.297816 101.50449 70.901153 1.850653298 -0.025671 173 55 SH16061 16061 YDL219W_4_65243_65766_INTRON_66_136 intron 28.137341 102.38238 28.137341 75.245039 51.69119 1.71341653 0.033705 173 56 SH6192 6192 snR40 snR40 21 35 33.006717 92.038312 62.5225145 1.796036436 0.007318 173 57 SH9297 9297 RUF1 RUF1 61 79 28.681199 77.965462 53.3233305 1.726917267 0.034217 173 58 SH5281 5281 snR30 snR30 256 270 33.218413 91.700327 62.45937 1.795597599 0.020254 173 59 SH21562 21562 copy of SH4992 30.793701 84.460156 57.6269285 1.760625472 0.061096 173 60 SH13397 13397 MT COX1 intronic 25.788374 88.272543 25.788374 63.484169 44.6362715 1.649687911 0.033199 173 61 SH3131 3131 Ser4 tRNA 61 77 31.424991 88.923596 60.1742935 1.779411 0.008592 173 62 SH6701 6701 snR49 snR49 31 47 53.079641 134.766723 93.923182 1.972772798 -0.341968 173 63 SH21753 21753 copy of SH12974 27.62237 86.136832 56.879601 1.754956541 -0.13645 173 64 SH543 543 Cys1 tRNA 16 28 35.315743 93.539375 64.427559 1.809071677 0.032262 173 65 SH7698 7698 snoRNA cluster1 intergenic 28.730759 101.442477 28.730759 73.711718 51.2212385 1.709450075 0.093643 173 66 SH15464 15464 YBL087C_2_60732_59815_INTRON_43_546 intron 30.728534 123.268712 30.728534 93.540178 62.134356 1.793331801 -0.099702 173 67 SH4223 4223 telomerase RNA telomerase 151 165 37.387641 93.905443 65.646542 1.817211854 0.07306 173 68 SH14525 14525 MT 21S rRNA 21S rRNA3 28.402458 110.81354 28.402458 83.411082 55.90677 1.747464402 -0.051781 173 69 SH20927 20927 YLR367W spliced 28.606843 79.7641 54.1854715 1.733882857 0.006491 173 70 SH18546 18546 YMR230W_13_732413_733140_INTRON_53_462 intron 26.534821 108.003026 26.534821 82.468205 54.501513 1.736408559 -0.168556 173 71 SH3306 3306 Thr2 3' flank 28.796231 76.4808 52.6385155 1.721303633 0.061009 173 72 SH4096 4096 SRP RNA SRP RNA 371 383 42.542355 95.093542 68.8179485 1.837701722 0.153495 173 73 SH6385 6385 snR43 snR43 166 185 26.570336 72.973449 49.7718925 1.696984154 -0.046407 173 74 SH12924 12924 MT COX1 COX1ai2 26.346647 95.334553 26.346647 69.987906 48.1672765 1.682752091 -0.022604 173 75 SH13094 13094 MT COX1 COX1ai3 29.767893 119.08253 29.767893 90.314637 60.041265 1.778449834 -0.087927 173 76 SH5480 5480 snR32 snR32 61 77 37.090751 99.226939 68.158845 1.833522222 -0.047094 173 77 SH21070 21070 YMR225C spliced 36.825034 91.23506 64.030047 1.806383821 0.118683 173 78 SH5518 5518 snR32 3' 29.220157 77.304224 53.2621905 1.726419024 0.077823 173 79 SH5879 5879 snR35 3' 27.884546 75.209721 51.5471335 1.712204519 0.017171 173 80 SH291 291 Arg4 51-63 51 63 1031.100316 1088.551069 1059.825693 3.025234444 -0.162032 173 81 SH16962 16962 YGR034W_7_555923_556666_INTRON_20_496 5' exon 25.463974 93.292432 25.463974 68.828458 47.146216 1.673446842 -0.072198 173 82 SH6633 6633 snR48 5' - 8 -9 8 27.475111 75.53149 51.5033005 1.711835061 -0.014982 173 83 SH20263 20263 YDR397C spliced 31.398143 89.982901 60.690522 1.783120873 -0.010872 173 84 SH21240 21240 YOR312C spliced 36.916947 91.716392 64.3166695 1.808323547 0.110128 173 85 SH15847 15847 YDL075W_4_322225_322987_INTRON_58_478 intron 39.499253 130.644437 39.499253 92.145184 65.8222185 1.818372516 0.157395 173 86 SH16445 16445 YER074W_5_306319_307192_INTRON_4_469 intron 23.986758 91.808129 23.986758 68.821371 46.4040645 1.666556022 -0.184203 173 87 SH12915 12915 MT COX1 COX1ai2 119.029163 293.513453 119.029163 175.48429 147.2567265 2.168075142 0.062921 173 88 SH16818 16818 YGL178W_7_167356_170575_INTRON_4_643 intron 34.193048 127.494914 34.193048 94.301866 64.247457 1.807855942 -0.011837 173 89 SH10824 10824 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1006 1027 26.250742 67.288659 46.7697005 1.669964589 0.008114 173 90 SH5004 5004 snR10 snR10 51 63 28.046697 92.711684 60.3791905 1.780887286 -0.208165 173 91 SH6118 6118 snR39B 5' 29.336925 76.478688 52.9078065 1.723519757 0.096087 173 92 SH13676 13676 MT ATP6 3' 33.238317 119.177659 33.238317 86.939342 60.0888295 1.778793744 0.118587 173 93 SH8129 8129 snoRNA cluster 3; snR41 28.592721 166.790522 28.592721 139.197801 83.895261 1.923737429 -0.959361 173 94 SH13401 13401 MT COX1 intronic 30.5052 139.897819 30.5052 110.392619 70.4489095 1.847874275 -0.429298 173 95 SH20824 20824 YKR057W spliced 26.20092 80.247226 53.224073 1.726108106 -0.165083 173 96 SH10362 10362 RUF7 RUF7 421 437 34.292549 102.261983 68.277266 1.834276123 -0.173912 173 97 SH9416 9416 RUF2 5' 36.72412 100.065838 68.394979 1.835024221 -0.072632 173 98 SH14283 14283 MT VAR1 includes 5’ processing site VAR1 24.901392 93.909458 24.901392 70.008066 47.454729 1.676279498 -0.131529 173 99 SH13526 13526 MT COX1 intronic 28.110994 92.872615 28.110994 65.761621 46.9363075 1.67150892 0.161995 173 100 SH2491 2491 Pro1 5' flank 35.858106 94.889509 65.3738075 1.81540378 0.016188 173 101 SH5443 5443 snR31 3' 29.264089 84.349303 56.806696 1.754399531 -0.00667 173 102 SH8427 8427 snoRNA cluster 5 intergenic 29.161322 110.31106 29.161322 82.149738 55.65553 1.745508323 0.013156 173 103 SH11201 11201 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2891 2909 35.881526 95.391026 65.636276 1.817143933 0.006042 173 104 SH18544 18544 YMR230W_13_732413_733140_INTRON_53_462 intron 28.604752 99.313893 28.604752 71.709141 50.1569465 1.700331089 0.112445 174 2 SH1613 1613 Leu5 5' flank 28.299094 88.583585 58.4413395 1.766720162 -0.125713 174 3 SH975 975 Gly1 3' flank 28.295222 80.678737 54.4869795 1.736292733 -0.025562 174 4 SH7987 7987 snoRNA cluster 2 snR57 30.508587 105.474674 30.508587 75.966087 53.237337 1.726216323 0.176607 174 5 SH12859 12859 MT COX1 COX1ai1 28.169004 100.797938 28.169004 73.628934 50.898969 1.706708985 0.057531 174 6 SH8371 8371 snoRNA cluster 5 5' 27.920147 107.720639 27.920147 80.800492 54.3603195 1.735282001 -0.052215 174 7 SH21528 21528 copy of SH3563 27.715603 66.451311 47.083457 1.672868342 0.124704 174 8 SH9173 9173 snR7 U5 RNA U5 136 150 36.562043 88.582314 62.5721785 1.796381276 0.172476 174 9 SH21265 21265 YPL081W spliced 30.058333 87.785237 58.921785 1.770275895 -0.030988 174 10 SH6965 6965 snR60 5' 27.90437 76.11567 52.01002 1.716087021 0.006522 174 11 SH7043 7043 snR62 snR62 6 27 27.842662 63.371478 45.60707 1.659032172 0.17905 174 12 SH5946 5946 snR36 snR36 186 208 27.900673 82.332001 55.116337 1.741280347 -0.072329 174 13 SH15078 15078 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.045517 88.757416 28.045517 61.711899 44.878708 1.652040346 0.218804 174 14 SH12828 12828 MT COX1 COX1ai1 28.125409 105.177276 28.125409 78.051867 53.088638 1.725001584 -0.003762 174 15 SH2982 2982 Ser1 3' flank 27.19368 68.686323 47.9400015 1.680698043 0.056349 174 16 SH2274 2274 Phe2 5' flank 28.750323 83.729202 56.2397625 1.750043478 -0.032655 174 17 SH13125 13125 MT COX1 COX1ai3 29.274482 96.06232 29.274482 67.787838 48.53116 1.686020672 0.210978 174 18 SH13978 13978 MT COB intronic 29.497114 120.754378 29.497114 92.257264 60.877189 1.784454591 -0.133079 174 19 SH17837 17837 YKR094C_11_618384_617630_INTRON_9_376 intron 29.331895 106.429534 29.331895 78.097639 53.714767 1.730093696 0.07479 174 20 SH17899 17899 YLR061W_12_263195_263949_INTRON_13_401 exon/intron 31.19322 113.086386 31.19322 82.893166 57.043193 1.756203827 0.10732 174 21 SH11374 11374 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3756 3774 32.880819 98.752082 65.8164505 1.818334457 -0.138922 174 22 SH1126 1126 Gly4 3' flank 27.870586 83.984689 55.9276375 1.747626474 -0.094261 174 23 SH4518 4518 U3b (snR17b) U3b 146 163 43.291411 105.632876 74.4621435 1.871935534 -0.04599 174 24 SH14986 14986 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.762102 99.628488 27.762102 72.866386 50.314244 1.701690952 0.0395 174 25 SH9418 9418 RUF2 5' 32.377634 79.44828 55.912957 1.747512461 0.222862 174 26 SH4708 4708 snR4 snR4 76 92 30.050895 92.696606 61.3737505 1.787982663 -0.115534 174 27 SH18351 18351 YML124C_13_23684_22049_INTRON_26_323 intron/exon 31.984572 114.562442 31.984572 83.57787 57.781221 1.761786715 0.128125 174 28 SH8988 8988 snR17a / U3a U3a 226 242 29.694092 81.134953 55.4145225 1.743623595 0.059714 174 29 SH19435 19435 YPR132W_16_794960_795762_INTRON_66_430 3' exon 38.926354 129.48819 38.926354 91.561836 65.244095 1.814541211 0.158474 174 30 SH15352 15352 YBL026W_2_170585_171000_INTRON_55_182 5' exon 28.381189 123.90419 28.381189 96.523001 62.452095 1.795547012 -0.25462 174 31 SH8123 8123 snoRNA cluster 3; snR41 28.791414 105.831102 28.791414 78.039688 53.415551 1.727667713 0.040491 174 32 SH17274 17274 YHR141C_8_382752_381991_INTRON_5_445 5' exon 30.575384 110.952699 30.575384 81.377315 55.9763495 1.748004573 0.109095 174 33 SH20111 20111 YDL064W spliced 56.359749 130.347086 93.3534175 1.970130221 -0.219329 174 34 SH15739 15739 YCR028C-A_3_173432_172942_INTRON_243_325 exon/intron 41.058049 132.387882 41.058049 92.329833 66.693941 1.824086381 0.185111 174 35 SH255 255 Arg3 3' flank 53.212906 121.868053 87.5404795 1.942208921 -0.145103 174 36 SH21768 21768 copy of SH13603 26.816506 67.703783 47.2601445 1.674495045 0.043277 174 37 SH15889 15889 YDL082W_4_308423_309387_INTRON_5_369 intron 24.802921 100.682231 24.802921 76.87931 50.8411155 1.706215071 -0.229002 174 38 SH10267 10267 RUF7 5' 42.28026 97.876704 70.078482 1.845584686 0.088909 174 39 SH5635 5635 snR34 snR34 96 113 27.01139 79.473243 53.2423165 1.726256943 -0.097979 174 40 SH20437 20437 YGL076C spliced 75.499828 139.275393 107.3876105 2.030954179 -0.042986 174 41 SH16397 16397 YER056C-A_5_270183_269421_INTRON_38_434 5' exon 34.108118 134.677938 34.108118 101.56982 67.838969 1.831479239 -0.16473 174 42 SH13910 13910 MT COB Cytbi3 25.752631 94.894223 25.752631 70.141592 47.9471115 1.680762449 -0.068625 174 43 SH1007 1007 Gly2 tRNA 26 42 30.477581 100.729883 65.603732 1.816928546 -0.244062 174 44 SH9368 9368 RUF1 RUF1 416 433 28.351869 74.456377 51.404123 1.710997954 0.058566 174 45 SH20060 20060 YBR255C-A spliced 28.111752 81.851602 54.981677 1.740217982 -0.052269 174 46 SH1972 1972 Lys2 tRNA 61 73 50.188252 117.01287 83.600561 1.922209192 -0.121039 174 47 SH14416 14416 MT 21S rRNA 21S rRNA3 29.839537 115.206582 29.839537 86.367045 58.103291 1.764200732 -0.01557 174 48 SH16764 16764 YGL087C_7_346902_346404_INTRON_12_96 3' exon 25.594181 101.655257 25.594181 77.061076 51.3276285 1.710351199 -0.17079 174 49 SH18637 18637 YNL096C_14_444312_443395_INTRON_145_489 intron 30.255777 114.851015 30.255777 85.595238 57.9255075 1.762869847 0.016858 174 50 SH11275 11275 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3261 3278 30.839107 86.60701 58.7230585 1.768808667 0.024238 174 51 SH17132 17132 YHR010W_8_126513_127484_INTRON_32_592 intron 31.450524 126.978599 31.450524 96.528075 63.9892995 1.806107356 -0.13068 174 52 SH13569 13569 MT COX1 Exon 6 29.256626 104.346833 29.256626 76.090207 52.6734165 1.721591488 0.096021 174 53 SH15850 15850 YDL075W_4_322225_322987_INTRON_58_478 intron 26.534535 96.188297 26.534535 70.653762 48.5941485 1.686583977 -0.018005 174 54 SH7477 7477 snR71 snR71 1 20 39.588976 96.445076 68.017026 1.832617639 0.065189 174 55 SH12835 12835 MT COX1 COX1ai1 26.19612 95.127715 26.19612 69.931595 48.0638575 1.681818623 -0.032866 174 56 SH12058 12058 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7176 7191 33.172915 91.028683 62.100799 1.793097188 0.03401 174 57 SH4611 4611 snR3 5' 28.713015 71.299032 50.0060235 1.699022321 0.125224 174 58 SH9056 9056 snR17a / U3a 3' 28.639369 89.176524 58.9079465 1.770173884 -0.120036 174 59 SH5666 5666 snR34 snR34 251 268 28.374651 84.243261 56.308956 1.750577475 -0.063566 174 60 SH13499 13499 MT COX1 intronic 25.535614 101.60402 25.535614 77.068406 51.30201 1.710134381 -0.175294 174 61 SH9772 9772 RUF4 RUF4 636 653 26.89252 81.576448 54.234484 1.734275513 -0.132441 174 62 SH16647 16647 YFR031C-A_6_221405_220494_INTRON_5_151 intron 33.157476 112.405116 33.157476 80.24764 56.702558 1.753602651 0.23923 174 63 SH460 460 Asp1 3' flank 27.634019 78.973049 53.303534 1.726756004 -0.048719 174 64 SH4675 4675 snR4 5' 26.337608 71.255185 48.7963965 1.688387752 -0.040484 174 65 SH8726 8726 LSR1 / U2 RNA U2 271 285 57.969467 110.320181 84.144824 1.925027406 0.12892 174 66 SH4243 4243 telomerase RNA telomerase 251 267 30.994888 69.689739 50.3423135 1.70193317 0.292742 174 67 SH13247 13247 MT COX1 COX1-ai4 28.648575 104.952809 28.648575 77.304234 52.9764045 1.724082479 0.040601 174 68 SH20135 20135 YDL083C spliced 28.65657 75.465534 52.061052 1.71651294 0.065228 174 69 SH11629 11629 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5031 5046 2595.631038 1892.66957 2244.150304 3.351051941 0.183373 174 70 SH3732 3732 Val3 3' flank 28.660623 101.739618 65.2001205 1.814248398 -0.322932 174 71 SH404 404 Asn1 3' flank 28.680454 77.797345 53.2388995 1.72622907 0.03633 174 72 SH17862 17862 YLL050C_12_40413_39803_INTRON_15_193 exon/intron 30.975343 113.128498 30.975343 83.153155 57.064249 1.756364106 0.093094 174 73 SH18140 18140 YLR406C_12_931752_931062_INTRON_58_406 intron 30.036004 113.584402 30.036004 84.548398 57.292201 1.758095507 0.026136 174 74 SH2277 2277 Phe2 5' flank - tRNA2 2 26.540522 71.111606 48.826064 1.688651716 -0.023769 174 75 SH1462 1462 Leu2 tRNA 81 97 3759.211146 5702.416077 4730.813612 3.674935838 -1.07985 174 76 SH16418 16418 YER056C-A_5_270183_269421_INTRON_38_434 intron 28.564786 110.121287 28.564786 82.556501 55.5606435 1.744767267 -0.030732 174 77 SH12350 12350 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 38.625556 124.434016 38.625556 86.80846 62.717008 1.797385332 0.26048 174 78 SH21673 21673 copy of SH9623 26.789751 75.414592 51.1021715 1.708439355 -0.062144 174 79 SH17001 17001 YGR118W_7_726968_727725_INTRON_66_385 intron/exon 27.617425 104.416772 27.617425 77.799347 52.708386 1.721879718 -0.034859 174 80 SH3882 3882 RNaseP 3' 27.581187 76.899225 52.240206 1.718004881 -0.025682 174 81 SH12107 12107 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7421 7436 53.963471 111.250237 82.606854 1.917016083 0.044713 174 82 SH16725 16725 YGL033W_7_435621_436347_INTRON_56_125 intron 33.76734 118.12351 33.76734 85.35617 59.561755 1.774967486 0.168152 174 83 SH20609 20609 YHR079C-A spliced 29.451104 100.16257 64.806837 1.811620826 -0.26235 174 84 SH21452 21452 copy of SH378 24.777402 66.240106 45.508754 1.658094945 -0.084738 174 85 SH8626 8626 snR19 / U1 RNA U1 626 640 536.551787 589.378565 562.965176 2.750481531 -0.044176 174 86 SH12353 12353 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.001905 122.75232 29.001905 94.750415 61.87616 1.791523354 -0.19699 174 87 SH14084 14084 MT COB Cytbi4 29.011993 106.903916 29.011993 78.891923 53.951958 1.732007211 0.043997 174 88 SH14751 14751 MT ORF11; tRNA Leu; tRNA Gln ORF11 31.116329 119.600692 31.116329 89.484363 60.300346 1.780319804 -0.014344 174 89 SH11961 11961 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6691 6706 133.152747 179.109063 156.130905 2.193488877 0.161356 174 90 SH18868 18868 YNR053C_14_723108_721117_INTRON_811_1341 intron 28.18359 94.846619 28.18359 67.663029 47.9233095 1.680546802 0.139611 174 91 SH15273 15273 MT 9S rRNA 9S 26.246903 99.318995 26.246903 74.072092 50.1594975 1.700353177 -0.084332 174 92 SH16072 16072 YDR005C_4_458099_456832_INTRON_7_86 3' exon 30.431036 142.719076 30.431036 113.28804 71.859538 1.856484421 -0.483953 174 93 SH13357 13357 MT COX1 intronic 30.084533 111.12501 30.084533 82.040477 56.062505 1.748672499 0.073215 174 94 SH12748 12748 MT COX1 COX1ai1 27.644782 91.965314 27.644782 65.320532 46.482657 1.667290945 0.136247 174 95 SH13503 13503 MT COX1 intronic 29.319055 114.364622 29.319055 86.045567 57.682311 1.761042652 -0.033353 174 96 SH19642 19642 RNA14 2.2 32.829695 91.321767 62.075731 1.792921842 0.018593 174 97 SH17841 17841 YKR094C_11_618384_617630_INTRON_9_376 intron 26.290474 87.470351 26.290474 62.179877 44.2351755 1.645767755 0.090337 174 98 SH13421 13421 MT COX1 intronic 26.844535 90.911805 26.844535 65.06727 45.9559025 1.662341299 0.083404 174 99 SH5265 5265 snR30 snR30 176 188 27.917688 87.809568 57.863628 1.76240566 -0.135669 174 100 SH2908 2908 Pro8 tRNA 61 77 115.383207 215.856286 165.6197465 2.219112116 -0.325482 174 101 SH12789 12789 MT COX1 COX1ai1 29.632742 108.368755 29.632742 79.736013 54.6843775 1.737863273 0.073231 174 102 SH8674 8674 LSR1 / U2 RNA U2 11 28 29.595488 87.481562 58.538525 1.767441775 -0.046396 174 103 SH7652 7652 snoRNA cluster1 5' 29.221789 103.411462 29.221789 75.189673 52.205731 1.717718181 0.105696 174 104 SH12801 12801 MT COX1 COX1ai1 31.312269 123.028814 31.312269 92.716545 62.014407 1.792492595 -0.060834 175 2 SH7441 7441 snR69 3' 32.986898 90.846988 61.916943 1.791809506 0.033261 175 3 SH6069 6069 snR37 snR37 261 279 30.405902 84.843003 57.6244525 1.760606812 0.037137 175 4 SH14703 14703 MT tRNA thr2 tRNA 27.890144 96.288777 27.890144 69.398633 48.6443885 1.687032748 0.095151 175 5 SH16937 16937 YGR027C_7_534779_534126_INTRON_1_312 intron 29.746556 121.168691 29.746556 92.422135 61.0843455 1.785929925 -0.12457 175 6 SH19323 19323 YPL218W_16_138697_139408_INTRON_29_167 5' exon 38.387526 132.474198 38.387526 95.086672 66.737099 1.824367324 0.069091 175 7 SH4430 4430 telomerase RNA telomerase 1186 1205 27.63595 68.174019 47.9049845 1.680380704 0.094602 175 8 SH6429 6429 snR45 5' - 8 -9 8 32.39462 91.68773 62.041175 1.792680014 -0.000931 175 9 SH7547 7547 snR79 76-84 + 3' 76 28.164552 71.552104 49.858328 1.69773771 0.084682 175 10 SH21920 21920 copy of SH20200 30.329562 95.367669 62.8486155 1.798295715 -0.147126 175 11 SH20273 20273 YDR447C spliced 34.668594 100.270057 67.4693255 1.829106368 -0.124646 175 12 SH16992 16992 YGR118W_7_726968_727725_INTRON_66_385 intron 93.432682 237.249218 93.432682 144.816536 119.124609 2.076001488 0.118262 175 13 SH20484 20484 YGL226C-A spliced 32.522032 89.377324 60.949678 1.784971416 0.046645 175 14 SH11736 11736 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5566 5586 30.283236 86.936519 58.6098775 1.767970814 -0.005981 175 15 SH17980 17980 YLR211C_12_564531_563792_INTRON_19_77 3' exon 35.985288 130.92461 35.985288 95.939322 65.962305 1.819295823 -0.003129 175 16 SH15827 15827 YDL064W_4_337486_338069_INTRON_39_148 3' exon 28.455108 116.282425 28.455108 88.827317 58.6412125 1.768202941 -0.122605 175 17 SH10019 10019 RUF6 5' 89.339294 140.576401 114.9578475 2.060538623 0.121814 175 18 SH7573 7573 snR189 5' 29.386748 74.478426 51.932587 1.715439957 0.125819 175 19 SH19821 19821 Negative Control 31.774602 90.844766 61.309684 1.787529078 -0.009666 175 20 SH19564 19564 CBP1 2.2 26.906315 70.590187 48.748251 1.687959039 0.009655 175 21 SH1421 1421 Leu1 3' flank 31.142288 82.340899 56.7415935 1.753901528 0.115474 175 22 SH4032 4032 SRP RNA SRP RNA 51 70 28.564622 70.380508 49.472565 1.694364428 0.127688 175 23 SH16235 16235 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 28.435893 118.452066 28.435893 91.016173 59.726033 1.77616367 -0.161167 175 24 SH11760 11760 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5686 5699 20511.64211 13596.8488 17054.24545 4.231832509 -0.243231 175 25 SH14374 14374 MT ORF9 and ORF10 (hypothetical) ORF10 28.60118 103.061021 28.60118 75.459841 52.0305105 1.716258087 0.061658 175 26 SH10273 10273 RUF7 5' 28.468006 82.21869 55.343348 1.743065428 -0.033022 175 27 SH21074 21074 YMR230W spliced 28.275244 74.7477 51.511472 1.711903961 0.049557 175 28 SH6830 6830 snR52 snR52 56 75 28.085915 74.965969 51.525942 1.71202594 0.033979 175 29 SH7387 7387 snR68 3' 27.979976 81.90276 54.941368 1.739899469 -0.061748 175 30 SH8997 8997 snR17a / U3a U3a 271 288 37.188896 100.082145 68.6355205 1.836548932 -0.062621 175 31 SH2535 2535 Pro2 5' flank 26.180178 70.441376 48.310777 1.684044022 -0.041008 175 32 SH13798 13798 MT COB intronic 28.337507 115.309198 28.337507 87.971691 58.154599 1.764584065 -0.113174 175 33 SH5721 5721 snR34 snR34 526 546 30.002616 91.74478 60.873698 1.784429685 -0.101719 175 34 SH15445 15445 YBL087C_2_60732_59815_INTRON_43_546 intron 27.262959 94.552453 27.262959 68.289494 47.7762265 1.679211845 0.066809 175 35 SH20295 20295 YDR500C spliced 27.20083 76.859643 52.0302365 1.7162558 -0.051331 175 36 SH6834 6834 snR52 snR52 76 92 33.725061 82.950456 58.3377585 1.765949738 0.210702 175 37 SH21266 21266 YPL081W spliced 35.561686 85.21941 60.390548 1.780968971 0.227357 175 38 SH21373 21373 Leu8_9 spliced 35.417226 97.510353 66.4637895 1.822585099 -0.049712 175 39 SH4756 4756 snR5 5' 26.945158 75.371476 51.158317 1.708916249 -0.050456 175 40 SH16779 16779 YGL103W_7_310965_311925_INTRON_50_560 intron 30.520521 117.013776 30.520521 87.493255 59.006888 1.770902711 -0.00541 175 41 SH8018 8018 snoRNA cluster 2 snR55 41.320481 125.102704 41.320481 84.782223 63.051352 1.799694404 0.366087 175 42 SH6518 6518 snR46 snR46 81 100 26.259026 72.868236 49.563631 1.695163115 -0.067719 175 43 SH14125 14125 MT COB intron/exon5 28.901165 115.265026 28.901165 87.363861 58.132513 1.764419097 -0.076088 175 44 SH1540 1540 Leu3 3' flank 33.551331 93.953673 63.752502 1.804497234 -0.020519 175 45 SH7788 7788 snoRNA cluster1 intergenic/snR75 28.768279 104.468193 28.768279 76.699914 52.7340965 1.72209151 0.056315 175 46 SH18837 18837 YNL302C_14_62942_61957_INTRON_21_571 intron 28.407377 110.285274 28.407377 82.877897 55.642637 1.745407704 -0.045034 175 47 SH5536 5536 snR33 5' 25.994384 70.151318 48.072851 1.681899879 -0.050764 175 48 SH11289 11289 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3331 3344 39.536325 94.056707 66.796516 1.824753811 0.115816 175 49 SH16769 16769 YGL103W_7_310965_311925_INTRON_50_560 intron 212.919215 480.952013 212.919215 269.032798 240.9760065 2.381973803 0.049857 175 50 SH17127 17127 YHR010W_8_126513_127484_INTRON_32_592 intron 29.072641 118.127776 29.072641 90.055135 59.563888 1.774983038 -0.115106 175 51 SH2774 2774 Pro6 5' flank 29.465277 86.347046 57.9061615 1.762724777 -0.032105 175 52 SH12910 12910 MT COX1 COX1ai2 29.390605 106.371968 29.390605 77.981363 53.685984 1.729860918 0.08005 175 53 SH1659 1659 Leu5 3' flank 28.970928 80.402456 54.686692 1.737881654 0.022339 175 54 SH6073 6073 snR37 snR37 281 299 28.69191 77.532502 53.112206 1.72519434 0.040496 175 55 SH18547 18547 YMR230W_13_732413_733140_INTRON_53_462 intron 26.529092 98.122789 26.529092 72.593697 49.5613945 1.695143518 -0.044392 175 56 SH16374 16374 YER003C_5_159117_157735_INTRON_32_124 intron 28.880557 104.611657 28.880557 76.7311 52.8058285 1.722681861 0.063247 175 57 SH15841 15841 YDL075W_4_322225_322987_INTRON_58_478 intron 28.787128 108.11625 28.787128 80.329122 54.558125 1.736859436 0.011261 175 58 SH6120 6120 snR39B 5' 33.093047 91.372732 62.2328895 1.794019966 0.024289 175 59 SH19034 19034 YOR234C_15_779404_778554_INTRON_20_546 intron 28.15174 108.88556 28.15174 81.73382 54.94278 1.73991063 -0.048149 175 60 SH15318 15318 YAL003W_1_142172_143158_INTRON_81_446 intron 38.203763 129.654062 38.203763 92.450299 65.327031 1.815092921 0.123139 175 61 SH21003 21003 YML094W spliced 32.912865 92.952505 62.932685 1.798876261 -0.015186 175 62 SH12825 12825 MT COX1 COX1ai1 24.538924 97.94051 24.538924 74.401586 49.470255 1.694344149 -0.218174 175 63 SH3564 3564 Tyr2 3' flank 27.585805 71.148652 49.3672285 1.693438746 0.050123 175 64 SH9975 9975 RUF5-1 RUF5-1 681 700 28.6057 78.145999 53.3758495 1.7273448 0.026935 175 65 SH15272 15272 MT 9S rRNA 9S 29.010545 110.792684 29.010545 82.782139 55.896342 1.747383387 -0.004289 175 66 SH17087 17087 YHL001W_8_104270_105084_INTRON_130_527 intron 32.516044 119.4384 32.516044 87.922356 60.2192 1.779734982 0.071789 175 67 SH15703 15703 YBR220C_2_663261_662457_INTRON_302_722 intron 29.035507 113.556907 29.035507 85.5214 57.2784535 1.757991284 -0.036907 175 68 SH14954 14954 MT tRNA Met 3' 26.537159 99.735173 26.537159 74.198014 50.3675865 1.702151141 -0.064782 175 69 SH3122 3122 Ser4 tRNA 16 30 35.231382 89.382628 62.307005 1.794536876 0.122524 175 70 SH13078 13078 MT COX1 COX1ai3 32.91181 125.272449 32.91181 93.360639 63.1362245 1.800278608 -0.02411 175 71 SH8611 8611 snR19 / U1 RNA U1 551 569 28.64669 68.527813 48.5872515 1.686522332 0.158811 175 72 SH8758 8758 LSR1 / U2 RNA U2 431 447 53.778981 118.539512 86.1592465 1.935301892 -0.081435 175 73 SH1647 1647 Leu5 101-115 + 3' flank 101 33.584749 89.75112 61.6679345 1.790059402 0.073258 175 74 SH12397 12397 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.877721 106.434767 28.877721 78.557046 53.7173835 1.730114851 0.039515 175 75 SH17601 17601 YJL205C-A_10_50443_50139_INTRON_33_175 exon/intron 28.105139 101.444835 28.105139 74.339696 51.2224175 1.709460072 0.043667 175 76 SH8363 8363 snoRNA cluster4 3' 26.902299 113.594824 26.902299 87.692525 57.297412 1.758135006 -0.20414 175 77 SH12281 12281 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 41.253782 134.381277 41.253782 94.127495 67.6906385 1.830528611 0.14925 175 78 SH11360 11360 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3686 3704 29.004531 75.489442 52.2469865 1.718061246 0.087652 175 79 SH17791 17791 YKL186C_11_93537_92746_INTRON_71_233 intron 29.746953 122.31568 29.746953 93.568727 61.65784 1.789988306 -0.143626 175 80 SH9192 9192 snR7 U5 RNA 3' 27.565208 70.054861 48.8100345 1.688509115 0.063551 175 81 SH3935 3935 RNase MRP RNaseMRP 91 106 29.445642 91.636789 60.5412155 1.782051136 -0.124977 175 82 SH14932 14932 MT tRNA Asn tRNA 25.225903 99.16861 25.225903 74.942707 50.084305 1.699701652 -0.171955 175 83 SH4312 4312 telomerase RNA telomerase 596 615 25.402906 84.464496 54.933701 1.739838859 -0.274643 175 84 SH8019 8019 snoRNA cluster 2 snR55 75.317403 212.690924 75.317403 138.373521 106.845462 2.028756081 -0.033789 175 85 SH6350 6350 snR43 5' - 7 -9 7 31.849716 95.134853 63.4922845 1.802720954 -0.090376 175 86 SH6214 6214 snR40 3' 29.790418 89.134439 59.4624285 1.774242642 -0.066566 175 87 SH16240 16240 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.784512 107.904171 29.784512 79.119659 54.4520855 1.736014518 0.090626 175 88 SH16321 16321 YDR471W_4_1401759_1402553_INTRON_32_415 intron 31.986264 124.32341 31.986264 93.337146 62.661705 1.797002208 -0.04798 175 89 SH1252 1252 Ile2 5' flank 28.074826 86.697975 57.3864005 1.758808985 -0.112338 175 90 SH13791 13791 MT COB intronic 28.860871 102.744534 28.860871 74.883663 51.872267 1.714935229 0.086363 175 91 SH17492 17492 YJL041W_10_365480_368069_INTRON_2_119 5' exon 29.307794 115.785269 29.307794 87.477475 58.3926345 1.76635807 -0.059398 175 92 SH16556 16556 YER133W_5_432491_433954_INTRON_178_702 intron 29.196802 88.129477 29.196802 59.932675 44.5647385 1.648991362 0.324044 175 93 SH13523 13523 MT COX1 intronic 31.072558 154.203735 31.072558 124.131177 77.6018675 1.889872173 -0.654641 175 94 SH17674 17674 YKL006C-A_11_430270_429836_INTRON_37_177 3' exon 28.32506 112.457541 28.32506 85.132481 56.7287705 1.753803371 -0.077375 175 95 SH15214 15214 MT COX3 cox3 27.56267 75.362599 27.56267 48.799929 38.1812995 1.581850706 0.430788 175 96 SH8241 8241 snoRNA cluster 3; 3' 26.567852 99.531645 26.567852 73.963793 50.2658225 1.701272793 -0.059522 175 97 SH5821 5821 snR35 snR35 291 307 40.412549 88.716358 64.5644535 1.809993479 0.254419 175 98 SH16777 16777 YGL103W_7_310965_311925_INTRON_50_560 intron 32.462928 118.894666 32.462928 87.431738 59.947333 1.777769867 0.078257 175 99 SH13465 13465 MT COX1 intronic 34.098347 122.183378 34.098347 89.085031 61.591689 1.789522114 0.101356 175 100 SH17907 17907 YLR061W_12_263195_263949_INTRON_13_401 intron 29.125775 105.915083 29.125775 77.789308 53.4575415 1.728008982 0.065464 175 101 SH4819 4819 snR5 3' 27.690083 80.802891 54.246487 1.734371619 -0.067835 175 102 SH15100 15100 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 27.679413 110.416395 27.679413 83.736982 55.7081975 1.745919107 -0.104272 175 103 SH9478 9478 RUF2 RUF2 231 247 31.962698 84.461147 58.2119225 1.765011942 0.110947 175 104 SH17487 17487 YJL024C_10_396288_395627_INTRON_23_99 intron 29.124851 103.092735 29.124851 74.967884 52.0463675 1.716390424 0.102393 176 2 SH18061 18061 YLR333C_12_796335_795573_INTRON_1_423 3' exon 28.272223 122.020949 28.272223 94.748726 61.5104745 1.788949077 -0.231067 176 3 SH14489 14489 MT 21S rRNA 21S rRNA3 25.924235 98.583801 25.924235 73.659566 49.7919005 1.697158703 -0.102795 176 4 SH16624 16624 YFL039C_6_54695_53260_INTRON_11_318 intron 38.847507 150.570668 38.847507 112.723161 75.785334 1.879585169 -0.27059 176 5 SH9646 9646 RUF4 RUF4 6 21 29.558038 86.562916 58.060477 1.763880599 -0.03176 176 6 SH5421 5421 snR31 snR31 171 187 33.945104 75.7245 54.834802 1.73905628 0.3604 176 7 SH9877 9877 RUF5-1 RUF5-1 191 206 32.258454 85.388185 58.8233195 1.769549529 0.106387 176 8 SH17262 17262 YHR101C_8_315970_314876_INTRON_111_197 intron/exon 26.036196 94.906687 26.036196 69.870491 47.9533435 1.680818893 -0.04382 176 9 SH16399 16399 YER056C-A_5_270183_269421_INTRON_38_434 exon/intron 28.306123 112.791885 28.306123 85.485762 56.8959425 1.755081296 -0.082781 176 10 SH6583 6583 snR47 snR47 21 36 30.293304 80.186074 55.239689 1.742251225 0.109135 176 11 SH17347 17347 YIL018W_9_316766_317930_INTRON_5_404 intron 32.279615 105.922325 32.279615 74.64271 53.4611625 1.728038398 0.300522 176 12 SH6347 6347 snR43 5' 29.938164 86.222534 58.080349 1.764029217 -0.008563 176 13 SH10018 10018 RUF6 5' 948.058258 858.003789 903.0310235 2.955702671 0.101756 176 14 SH3961 3961 RNase MRP RNaseMRP 221 237 27.5864 68.234744 47.910572 1.680431356 0.090292 176 15 SH18611 18611 YNL069C_14_494998_493953_INTRON_29_477 intron 29.756754 113.07498 29.756754 84.318226 57.03749 1.756160406 0.017852 176 16 SH12201 12201 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7891 7909 27.773499 66.906568 47.3400335 1.675228561 0.122171 176 17 SH16437 16437 YER074W_5_306319_307192_INTRON_4_469 intron 30.518487 125.802701 30.518487 96.284214 63.4013505 1.802098509 -0.153611 176 18 SH13418 13418 MT COX1 intronic 28.816237 101.293666 28.816237 73.477429 51.146833 1.708818747 0.102427 176 19 SH15176 15176 MT COX3 5' 26.853445 98.734249 26.853445 72.880804 49.8671245 1.697814326 -0.024777 176 20 SH10208 10208 RUF6 RUF6 886 902 33.905525 89.585541 61.745533 1.790605544 0.085132 176 21 SH6320 6320 snR42 3' 26.78529 74.510763 50.6480265 1.704562528 -0.050895 176 22 SH8839 8839 LSR1 / U2 RNA U2 836 853 28.956164 81.070737 55.0134505 1.740468885 0.013091 176 23 SH14026 14026 MT COB Exon4 27.899236 88.42885 27.899236 61.529614 44.714425 1.65044765 0.212035 176 24 SH16035 16035 YDL191W_4_117665_118518_INTRON_4_494 intron 31.578452 122.109804 31.578452 91.531352 61.554902 1.789262644 -0.029602 176 25 SH11296 11296 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3366 3387 26.959011 78.335652 52.6473315 1.721376363 -0.087201 176 26 SH21125 21125 YNL130C spliced 35.907112 106.769196 71.338154 1.853321867 -0.224886 176 27 SH4014 4014 SRP RNA 5' 28.679807 77.874929 53.277368 1.726542762 0.035289 176 28 SH18555 18555 YMR230W_13_732413_733140_INTRON_53_462 3' exon 61.193975 188.714885 61.193975 128.52091 94.8574425 1.977071411 -0.110921 176 29 SH16063 16063 YDL219W_4_65243_65766_INTRON_66_136 3' exon 28.110739 95.314345 28.110739 68.203606 48.1571725 1.68266098 0.12699 176 30 SH11697 11697 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5371 5389 10053.66314 7852.062582 8952.862862 3.951961932 -0.305162 176 31 SH16127 16127 YDR064W_4_579453_580447_INTRON_22_560 intron 32.727294 122.698268 32.727294 90.970974 61.849134 1.791333623 0.023738 176 32 SH17950 17950 YLR128W_12_398531_399434_INTRON_4_97 3' exon 33.054136 117.075717 33.054136 85.021581 59.0378585 1.771130596 0.145656 176 33 SH9696 9696 RUF4 RUF4 256 275 28.609192 83.849916 56.229554 1.749964639 -0.04337 176 34 SH6588 6588 snR47 snR47 46 67 112.572146 174.999464 143.785805 2.157716013 0.001931 176 35 SH9405 9405 RUF1 3' 28.220007 81.25087 54.7354385 1.738268602 -0.037652 176 36 SH2176 2176 Met2 tRNA 11 23 52.072446 118.66886 85.370653 1.931308603 -0.114145 176 37 SH14503 14503 MT 21S rRNA 21S rRNA3 30.862845 110.750259 30.862845 80.887414 55.8751295 1.747218543 0.130961 176 38 SH17987 17987 YLR275W_12_694378_694800_INTRON_6_95 intron 25.424028 97.992786 25.424028 73.568758 49.496393 1.694573551 -0.139133 176 39 SH19246 19246 YPL129W_16_305297_306136_INTRON_10_114 5' exon 36.612689 122.079642 36.612689 86.466953 61.539821 1.789156229 0.22274 176 40 SH17463 17463 YIL148W_9_68708_69528_INTRON_9_442 intron 118.811846 299.147976 118.811846 181.33613 150.073988 2.176305423 0.005054 176 41 SH20354 20354 YER117W spliced 26.231866 78.978408 52.605137 1.721028156 -0.146979 176 42 SH1182 1182 His1 3' flank 28.94664 78.592238 53.769439 1.730535505 0.043558 176 43 SH14728 14728 MT tRNA cys; tRNA his intergenic 27.008158 100.015716 27.008158 74.007558 50.507858 1.703358951 -0.028435 176 44 SH16678 16678 YGL030W_7_439087_439634_INTRON_4_233 5' exon 27.227408 104.095934 27.227408 77.868526 52.547967 1.720555919 -0.062548 176 45 SH5606 5606 snR34 5' 27.216184 78.540201 52.8781925 1.723276602 -0.071924 176 46 SH3289 3289 Thr2 tRNA 46 61 31.456752 84.002192 57.729472 1.761397585 0.09802 176 47 SH12682 12682 MT tRNA Trp tRNA 28.765528 103.597517 28.765528 75.831989 52.2987585 1.718491379 0.067529 176 48 SH15362 15362 YBL027W_2_168385_169338_INTRON_3_386 5' exon 28.680574 114.598022 28.680574 86.917448 57.799011 1.761920407 -0.078418 176 49 SH5453 5453 snR32 5' 31.325465 71.697723 51.511594 1.711904989 0.284291 176 50 SH20668 20668 YIL069C spliced 29.469619 95.434642 62.4521305 1.795547259 -0.186708 176 51 SH14490 14490 MT 21S rRNA 21S rRNA3 27.22914 97.04038 27.22914 70.81124 49.02019 1.69037499 0.029623 176 52 SH13875 13875 MT COB intronic 26.946195 98.823575 26.946195 72.87738 49.9117875 1.698203124 -0.018092 176 53 SH16704 16704 YGL031C_7_438393_437938_INTRON_1_456 intron 35.705916 131.966047 35.705916 97.260131 66.4830235 1.822710762 -0.037556 176 54 SH20924 20924 YLR367W spliced 28.768863 88.252681 58.510772 1.767235828 -0.097888 176 55 SH2764 2764 Pro6 5' flank 33.503238 91.57045 62.536844 1.79613596 0.030429 176 56 SH9272 9272 RUF1 5' 26.778801 81.260985 54.019893 1.73255372 -0.136546 176 57 SH6449 6449 snR45 snR45 91 105 35.916639 92.196783 64.056711 1.806564636 0.076041 176 58 SH12687 12687 MT tRNA Trp 3' 31.108283 112.064666 31.108283 81.956383 56.532333 1.752296908 0.121252 176 59 SH15653 15653 YBR189W_2_604466_605466_INTRON_8_420 intron 28.374175 100.389806 28.374175 73.015631 50.694903 1.704964296 0.079533 176 60 SH8568 8568 snR19 / U1 RNA U1 336 352 31.836739 80.141252 55.9889955 1.748102676 0.186879 176 61 SH1764 1764 Leu7 3' flank 35.164874 105.720896 70.442885 1.847837134 -0.22172 176 62 SH11625 11625 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5011 5024 46.039465 92.170589 69.105027 1.839509641 0.283275 176 63 SH15334 15334 YAL030W_1_87288_87754_INTRON_103_215 5' exon 66.886464 171.348161 66.886464 105.461697 86.1740805 1.935376658 0.351904 176 64 SH20082 20082 YCR097W spliced 26.047898 70.604936 48.326417 1.684184597 -0.052988 176 65 SH6224 6224 snR42 5' 31.251246 85.688623 58.4699345 1.766932607 0.058498 176 66 SH15450 15450 YBL087C_2_60732_59815_INTRON_43_546 intron 29.304266 121.2467 29.304266 92.942434 61.12335 1.786207149 -0.153304 176 67 SH21881 21881 copy of SH18401 29.28823 77.738003 53.5131165 1.728460244 0.076605 176 68 SH663 663 Gln2 3' flank 31.10983 92.727069 61.9184495 1.791820073 -0.069691 176 69 SH14213 14213 MT ATP9 5'/ATP9 28.368448 111.232939 28.368448 83.864491 56.1164695 1.74909034 -0.059466 176 70 SH21393 21393 Pro2_7 spliced 35.193836 81.337895 58.2658655 1.765414202 0.298128 176 71 SH5746 5746 snR35 5' 28.864013 78.986213 53.925113 1.731791064 0.033166 176 72 SH16834 16834 YGL178W_7_167356_170575_INTRON_4_643 intron 29.078002 98.85015 29.078002 70.772148 49.925075 1.698318726 0.156667 176 73 SH16743 16743 YGL076C_7_365994_364333_INTRON_565_1032 intron 28.921397 102.411453 28.921397 74.490056 51.7057265 1.713538645 0.095587 176 74 SH9163 9163 snR7 U5 RNA U5 86 102 28.605237 82.828059 55.716648 1.745984981 -0.031354 176 75 SH2853 2853 Pro7 tRNA 71 83 165.268812 223.882666 194.575739 2.289088689 0.044297 176 76 SH17054 17054 YGR214W_7_920570_921783_INTRON_91_545 intron 27.188516 109.029712 27.188516 82.841196 55.014856 1.740479981 -0.12722 176 77 SH3171 3171 Ser5 5' flank 26.728186 63.085041 44.9066135 1.652310305 0.106514 176 78 SH14070 14070 MT COB Cytbi4 29.16866 98.383872 29.16866 70.215212 49.691936 1.696285917 0.170243 176 79 SH5438 5438 snR31 3' 29.674497 99.429715 64.552106 1.809910416 -0.240876 176 80 SH12238 12238 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.459124 89.923108 27.459124 63.463984 45.461554 1.657644277 0.150938 176 81 SH679 679 Gln3 5' flank 27.251956 86.060704 56.65633 1.753248439 -0.161002 176 82 SH11094 11094 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2356 2369 61.333518 137.203174 99.268346 1.996810786 -0.232377 176 83 SH11313 11313 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3451 3468 23375.69441 17506.84058 20441.26749 4.310507821 -0.471845 176 84 SH3235 3235 Thr1 tRNA 31 48 39.029313 91.7205 65.3749065 1.815411081 0.157076 176 85 SH17448 17448 YIL148W_9_68708_69528_INTRON_9_442 intron 27.731053 108.822612 27.731053 82.091559 54.911306 1.739661773 -0.08089 176 86 SH14271 14271 MT VAR1 includes 5’ processing site VAR1 27.883903 103.691554 27.883903 76.807651 52.345777 1.718881651 -0.003922 176 87 SH17286 17286 YHR141C_8_382752_381991_INTRON_5_445 intron 27.894145 91.496495 27.894145 64.60235 46.2482475 1.665095281 0.164149 176 88 SH4803 4803 snR5 snR5 186 203 30.054823 81.909837 55.98233 1.74805097 0.072949 176 89 SH18751 18751 YNL162W_14_331319_332151_INTRON_5_516 intron 32.597145 109.582673 32.597145 77.985528 55.2913365 1.742657088 0.260653 176 90 SH4221 4221 telomerase RNA telomerase 141 155 31.03802 84.202288 57.620154 1.760574415 0.076404 176 91 SH1767 1767 Leu7 3' flank 24.768079 75.774238 50.2711585 1.701318894 -0.217816 176 92 SH18461 18461 YMR143W_13_551927_552902_INTRON_25_568 intron 27.134319 89.292395 27.134319 63.158076 45.1461975 1.654621177 0.133527 176 93 SH21190 21190 YOL120C spliced 31.315782 129.196908 80.256345 1.904479377 -0.730729 176 94 SH15349 15349 YBL018C_2_186436_185960_INTRON_48_122 intron/exon 28.274012 106.22846 28.274012 78.954448 53.61423 1.729280073 -0.005344 176 95 SH12785 12785 MT COX1 COX1ai1 27.218061 118.781116 27.218061 92.563055 59.890558 1.777358359 -0.245822 176 96 SH1172 1172 His1 3' flank 24.047719 77.679514 50.8636165 1.706407236 -0.298486 176 97 SH17654 17654 YJR145C_10_702761_701720_INTRON_15_270 3' exon 29.319506 115.054737 29.319506 86.735231 58.0273685 1.763632876 -0.045682 176 98 SH16794 16794 YGL103W_7_310965_311925_INTRON_50_560 3' exon 35.870282 137.871012 35.870282 103.00073 69.435506 1.841581605 -0.151613 176 99 SH3058 3058 Ser3 5' flank - tRNA3 3 27.271393 82.569762 54.9205775 1.739735095 -0.118199 176 100 SH6889 6889 snR56 76-88 + 3' 76 26.880891 71.250133 49.065512 1.690776335 -0.001096 176 101 SH14886 14886 MT tRNA Ala 3' 27.749693 108.362548 27.749693 81.612855 54.681274 1.737838624 -0.073769 176 102 SH8927 8927 snR17a / U3a 5' 30.002136 74.273159 52.1376475 1.717151431 0.167631 176 103 SH21075 21075 YMR230W spliced 29.498269 87.605723 58.551996 1.767541704 -0.052994 176 104 SH3010 3010 Ser2 tRNA 11 25 970.937645 1588.288251 1279.612948 3.107078626 -0.833496 177 2 SH19250 19250 YPL129W_16_305297_306136_INTRON_10_114 intron 30.637782 95.37766 30.637782 65.739878 48.18883 1.682946382 0.328073 177 3 SH623 623 Gln2 5' flank 30.614882 81.502886 56.058884 1.748644448 0.108438 177 4 SH8936 8936 snR17a / U3a 5' 28.111349 69.091069 48.601209 1.686647073 0.114627 177 5 SH3241 3241 Thr1 61-73 + 3' flank 61 34.505094 83.552398 59.028746 1.771063557 0.23012 177 6 SH10685 10685 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 311 326 27.928705 80.892541 54.410623 1.735683699 -0.052777 177 7 SH8721 8721 LSR1 / U2 RNA U2 246 265 28.253826 69.806573 49.0301995 1.69046366 0.114476 177 8 SH21543 21543 copy of SH4153 28.329501 76.719415 52.524458 1.72036158 0.027101 177 9 SH1582 1582 Leu4 tRNA 81 97 4281.196684 5539.615698 4910.406191 3.691117419 -0.864735 177 10 SH14481 14481 MT 21S rRNA 21S rRNA3 27.72879 108.751428 27.72879 82.022638 54.875714 1.739380184 -0.080203 177 11 SH12959 12959 MT COX1 COX1ai2 27.636977 105.96152 27.636977 79.324543 53.48076 1.72819757 -0.052964 177 12 SH11783 11783 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5801 5814 251.228223 215.732919 233.480571 2.368250747 0.618665 177 13 SH894 894 Glu3 5' flank - tRNA2 2 29.49807 89.16587 59.33197 1.773288768 -0.080311 177 14 SH10470 10470 RUF8 RUF8 276 295 29.163509 89.452217 59.307863 1.773112276 -0.100537 177 15 SH20746 20746 YJL205C-A spliced 28.991816 119.714029 74.3529225 1.871298043 -0.637401 177 16 SH21257 21257 YPL075W spliced 35.663542 124.779982 80.221762 1.904292197 -0.549994 177 17 SH10958 10958 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1676 1694 449.500621 420.716328 435.1084745 2.638597542 0.270277 177 18 SH8242 8242 snoRNA cluster 3; 3' 27.918912 105.154378 27.918912 78.235466 53.077189 1.724907914 -0.019999 177 19 SH5324 5324 snR30 snR30 471 483 102.704533 151.937319 127.320926 2.104899789 0.139896 177 20 SH2563 2563 Pro2 tRNA-intron 51 67 72.617709 166.129373 119.373541 2.076908077 -0.404451 177 21 SH8026 8026 snoRNA cluster 2 snR55 28.781614 114.50983 28.781614 86.728216 57.754915 1.761588949 -0.070339 177 22 SH9987 9987 RUF5-1 RUF5-1 741 760 30.901585 93.314174 62.1078795 1.793146702 -0.088444 177 23 SH3776 3776 Val4 3' flank 28.909792 87.108683 58.0092375 1.763497157 -0.071163 177 24 SH19621 19621 RNA14 1.1 27.123819 69.408622 48.2662205 1.683643293 0.041357 177 25 SH8116 8116 snoRNA cluster 3; 5'/snR41 29.602548 107.449143 29.602548 78.846595 54.2245715 1.734196129 0.082541 177 26 SH14598 14598 MT 21S rRNA Sce1 endonuc 29.220391 115.607452 29.220391 87.387061 58.303726 1.76569631 -0.061796 177 27 SH9294 9294 RUF1 RUF1 46 66 28.666779 68.638976 48.6528775 1.687108531 0.158606 177 28 SH18053 18053 YLR333C_12_796335_795573_INTRON_1_423 intron 30.43929 106.86485 30.43929 77.42556 53.932425 1.731849948 0.153269 177 29 SH1449 1449 Leu2 tRNA 16 28 30.05248 81.248049 55.6502645 1.745467233 0.080924 177 30 SH14786 14786 MT ORF11; tRNA Leu; tRNA Gln 3' 27.679501 95.805667 27.679501 69.126166 48.4028335 1.684870786 0.084325 177 31 SH15950 15950 YDL125C_4_239605_239018_INTRON_98_208 3' exon 27.98752 108.957218 27.98752 81.969698 54.978609 1.740193748 -0.062058 177 32 SH4304 4304 telomerase RNA telomerase 556 574 28.597965 83.106034 55.8519995 1.747038725 -0.035187 177 33 SH4250 4250 telomerase RNA telomerase 286 305 29.022052 66.356731 47.6893915 1.678421781 0.214775 177 34 SH12861 12861 MT COX1 COX1ai1 31.351118 117.222436 31.351118 86.871318 59.111218 1.771669908 0.041563 177 35 SH17187 17187 YHR021C_8_148660_147862_INTRON_4_553 intron 26.572706 109.937736 26.572706 84.36503 55.468868 1.744049303 -0.188636 177 36 SH1869 1869 Leu9 86-101 + 3' flank 86 35.494729 85.421232 60.4579805 1.781453636 0.220942 177 37 SH10675 10675 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 261 279 28.626421 75.344512 51.9854665 1.715881946 0.064852 177 38 SH7689 7689 snoRNA cluster1 intergenic 28.768526 103.868956 28.768526 76.10043 52.434478 1.719616949 0.064187 177 39 SH6932 6932 snR58 snR58 21 38 28.846956 83.349497 56.0982265 1.748949132 -0.021782 177 40 SH2559 2559 Pro2 tRNA-exon/intron 31 45 33.446923 79.331372 56.3891475 1.751195529 0.268628 177 41 SH1100 1100 Gly4 5' flank 26.605262 91.851603 59.2284325 1.772530239 -0.271453 177 42 SH14669 14669 MT 21S rRNA 21S rRNA4 28.905509 100.757568 28.905509 72.852059 50.878784 1.706536723 0.116813 177 43 SH762 762 Gln4 3' flank 33.773276 87.367207 60.5702415 1.782259305 0.132362 177 44 SH8151 8151 snoRNA cluster 3; intergenic 34.292509 123.447321 34.292509 90.154812 62.2236605 1.793955556 0.08197 177 45 SH18171 18171 YLR448W_12_1028848_1029762_INTRON_16_399 intron 27.407071 100.056888 27.407071 73.649817 50.528444 1.703535925 0.004451 177 46 SH8462 8462 snoRNA cluster 5 snR128/3' 28.053982 107.96824 28.053982 80.914258 54.48412 1.736269941 -0.044613 177 47 SH913 913 Glu3 3' flank 26.355158 68.992087 47.6736225 1.678278153 -0.00823 177 48 SH6362 6362 snR43 snR43 51 70 28.564454 74.371245 51.4678495 1.711536022 0.073786 177 49 SH3598 3598 Val1 5' flank - tRNA5 5 26.820014 77.248188 52.034101 1.716288056 -0.083022 177 50 SH16806 16806 YGL137W_7_249872_252741_INTRON_19_218 intron 29.458566 102.513398 29.458566 74.054832 51.756699 1.71396657 0.136128 177 51 SH8210 8210 snoRNA cluster 3; snR51 31.531594 109.046036 31.531594 78.514442 55.023018 1.740544408 0.205715 177 52 SH8705 8705 LSR1 / U2 RNA U2 166 181 31.057103 89.122987 60.090045 1.778802529 -0.010634 177 53 SH2762 2762 Pro6 5' flank 28.602326 78.074537 53.3384315 1.72704024 0.027629 177 54 SH17480 17480 YJL001W_10_434855_435618_INTRON_66_181 3' exon 30.952223 115.020767 30.952223 85.068544 58.0103835 1.763505737 0.056865 177 55 SH10705 10705 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 411 428 31.216264 82.331168 56.773716 1.754147321 0.118832 177 56 SH10886 10886 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1316 1329 276.830294 349.73814 313.284217 2.495938516 -0.048883 177 57 SH20898 20898 YLR306W spliced 29.282596 92.16867 60.725633 1.783372051 -0.141362 177 58 SH18782 18782 YNL265C_14_145280_144279_INTRON_28_132 3' exon 26.949099 103.769526 26.949099 77.820427 52.384763 1.719204983 -0.081287 177 59 SH15005 15005 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 26.654961 92.914531 26.654961 67.25957 46.9572655 1.671702798 0.037958 177 60 SH9965 9965 RUF5-1 RUF5-1 631 648 28.227387 82.519816 55.3736015 1.743302771 -0.052675 177 61 SH8324 8324 snoRNA cluster4 intergenic 27.41632 103.952551 27.41632 77.536231 52.4762755 1.719963003 -0.045238 177 62 SH2602 2602 Pro3 5' flank 27.053627 77.785806 52.4197165 1.719494668 -0.073548 177 63 SH21328 21328 YPR043W spliced 146.223198 202.293831 174.2585145 2.241194007 0.066961 177 64 SH19786 19786 Negative Control 41.850544 94.232757 68.0416505 1.83277484 0.158761 177 65 SH6717 6717 snR49 snR49 111 131 28.912515 80.303334 54.6079245 1.73725567 0.019771 177 66 SH5589 5589 snR33 3' 29.406044 73.073593 51.2398185 1.709607583 0.146121 177 67 SH1289 1289 Ile2 3' flank 27.07085 77.165049 52.1179495 1.716987321 -0.064327 177 68 SH2273 2273 Phe2 5' flank 31.106614 79.550485 55.3285495 1.742949285 0.167022 177 69 SH5717 5717 snR34 snR34 506 522 34.109737 97.323779 65.716758 1.81767613 -0.077974 177 70 SH5942 5942 snR36 snR36 166 182 28.737818 78.007971 53.3728945 1.727320756 0.037387 177 71 SH2109 2109 Met1 5' flank 29.183887 83.118331 56.151109 1.749358338 0.002878 177 72 SH69 69 Ala2 5' flank 26.854664 77.802981 52.3288225 1.718740962 -0.087677 177 73 SH12294 12294 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.87086 101.488739 30.87086 71.617879 51.2443695 1.709646154 0.257862 177 74 SH19734 19734 Negative Control 32.555665 80.052752 56.3042085 1.750540858 0.218476 177 75 SH16066 16066 YDR005C_4_458099_456832_INTRON_7_86 exon/intron 27.689981 116.325281 27.689981 89.6353 58.6626405 1.768361607 -0.173094 177 76 SH1850 1850 Leu9 5' flank - tRNA8 8 31.588196 86.372134 58.980165 1.770705983 0.060561 177 77 SH17248 17248 YHR097C_8_298611_297387_INTRON_126_249 intron 40.048747 136.31026 40.048747 97.261513 68.65513 1.836672994 0.057301 177 78 SH11983 11983 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6801 6818 56.75571 109.875346 83.315528 1.920725951 0.116665 177 79 SH8687 8687 LSR1 / U2 RNA U2 76 93 27.321989 67.539039 47.430514 1.676057831 0.081578 177 80 SH3835 3835 RNaseP RNaseP 141 153 29.275086 82.360286 55.817686 1.746771828 0.01793 177 81 SH18530 18530 YMR225C_13_721402_720959_INTRON_59_205 3' exon 45.563657 144.408641 45.563657 99.844984 72.7043205 1.86156022 0.112152 177 82 SH15262 15262 MT 9S rRNA 9S 27.196509 96.308656 27.196509 70.112147 48.654328 1.687121479 0.036834 177 83 SH12296 12296 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.875646 95.860689 29.875646 66.985043 48.4303445 1.685117558 0.261556 177 84 SH13388 13388 MT COX1 exon 5b / intronic 27.771097 95.572084 27.771097 68.800987 48.286042 1.683821608 0.095212 177 85 SH21170 21170 YNL312W spliced 29.911678 85.503868 57.707773 1.761234315 0.003201 177 86 SH3065 3065 Ser3 tRNA 21 35 482.327293 475.007987 478.66764 2.680034068 0.165164 177 87 SH9735 9735 RUF4 RUF4 451 465 27.816244 82.7261 55.271172 1.742498674 -0.08282 177 88 SH5527 5527 snR33 5' 34.495193 88.584679 61.539936 1.78915704 0.122684 177 89 SH1810 1810 Leu8 tRNA 76 90 27.956283 85.58712 56.7717015 1.754131911 -0.107399 177 90 SH19006 19006 YOR182C_15_678792_678190_INTRON_4_414 5' exon 32.849864 112.497416 32.849864 80.647552 56.748708 1.753955978 0.219065 177 91 SH6919 6919 snR58 5' 33.367618 93.481048 63.424333 1.802255909 -0.014971 177 92 SH1296 1296 Ile2 3' flank 29.030678 67.094162 48.06242 1.681805634 0.204742 177 93 SH18149 18149 YLR406C_12_931752_931062_INTRON_58_406 intron 28.79641 92.283856 28.79641 64.487446 46.641928 1.668776494 0.227163 177 94 SH9133 9133 snR7 U5 RNA 5' 28.0276 55.496887 41.7622435 1.620783821 0.325482 177 95 SH21756 21756 copy of SH13181 46.321131 111.369669 78.8454 1.896776361 -0.094177 177 96 SH1523 1523 Leu3 tRNA 86 102 42.300082 111.584566 76.942324 1.8861653 -0.177022 177 97 SH19036 19036 YOR234C_15_779404_778554_INTRON_20_546 intron 27.109223 110.687842 27.109223 84.578619 55.843921 1.746975904 -0.153504 177 98 SH10820 10820 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 986 1005 41.94751 87.201783 64.5746465 1.810062037 0.320608 177 99 SH14173 14173 MT COB intronic 27.263059 108.534694 27.263059 82.271635 54.767347 1.738521704 -0.115153 177 100 SH12972 12972 MT COX1 COX1ai2 29.046031 104.417564 29.046031 76.371533 52.708782 1.721882981 0.078714 177 101 SH7325 7325 snR66 3' 29.656839 78.801874 54.2293565 1.734234451 0.086561 177 102 SH16957 16957 YGR029W_7_543547_544199_INTRON_87_169 intron 28.140982 102.472736 28.140982 75.331754 51.736368 1.713795937 0.032796 177 103 SH14864 14864 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 28.763468 103.12299 28.763468 75.359522 52.061495 1.716516635 0.073651 177 104 SH6519 6519 snR46 snR46 86 103 33.144371 90.194992 61.6696815 1.790071705 0.051958 178 2 SH7056 7056 snR62 snR62 71 88 35.553205 100.890307 68.221756 1.833922894 -0.116217 178 3 SH19162 19162 YPL075W_16_412249_415357_INTRON_9_759 intron 28.58121 111.25641 28.58121 83.6752 56.128205 1.749181154 -0.043125 178 4 SH5147 5147 snR11 3' 26.269062 75.793105 51.0310835 1.707834789 -0.104747 178 5 SH1722 1722 Leu7 5' flank 28.421392 84.228202 56.324797 1.750699635 -0.060286 178 6 SH8503 8503 snR19 / U1 RNA U1 11 27 63.499809 119.379409 91.439609 1.96113436 0.065443 178 7 SH21797 21797 copy of SH14862 28.569617 86.695018 57.6323175 1.760666084 -0.079642 178 8 SH10918 10918 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1476 1493 324.651052 286.350313 305.5006825 2.485012185 0.47682 178 9 SH20614 20614 YHR079C-A spliced 34.07257 96.114619 65.0935945 1.813538254 -0.053519 178 10 SH2604 2604 Pro3 5' flank 33.704331 90.283037 61.993684 1.792347445 0.064296 178 11 SH7231 7231 snR65 5' 27.288149 95.891178 61.5896635 1.789507831 -0.297025 178 12 SH14371 14371 MT ORF9 and ORF10 (hypothetical) ORF10 29.486276 109.235249 29.486276 80.748973 55.1176245 1.741290492 0.051255 178 13 SH4399 4399 telomerase RNA telomerase 1031 1048 27.028894 94.02515 60.527022 1.781949307 -0.279401 178 14 SH6332 6332 snR43 5' 40.646214 89.274366 64.96029 1.812647955 0.24623 178 15 SH21719 21719 copy of SH11709 51.463769 105.861693 78.662731 1.89576902 0.100901 178 16 SH16515 16515 YER117W_5_396765_397649_INTRON_43_513 intron 30.654092 196.890541 30.654092 167.236449 98.9452705 1.99539504 -1.272851 178 17 SH5737 5737 snR34 3' 28.971676 126.570007 77.7708415 1.890816798 -0.752371 178 18 SH9379 9379 RUF1 RUF1 471 487 43.341055 101.774331 72.557693 1.860683466 0.030469 178 19 SH2456 2456 Phe5 tRNA-intron/exon 51 66 730.276649 1404.918337 1067.597493 3.028407545 -1.016349 178 20 SH9195 9195 snR7 U5 RNA 3' 28.813694 86.056881 57.4352875 1.759178799 -0.056827 178 21 SH17632 17632 YJR094W-A_10_608000_608553_INTRON_3_277 intron 30.752868 115.873772 30.752868 86.120904 58.436886 1.766687065 0.029197 178 22 SH11217 11217 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2971 2992 37.130402 97.315022 67.222712 1.827516029 -0.006084 178 23 SH4060 4060 SRP RNA SRP RNA 191 208 35.243162 88.722071 61.9826165 1.792269905 0.137872 178 24 SH18267 18267 YML056C_13_164176_162194_INTRON_461_868 intron 26.913091 103.534371 26.913091 77.62128 52.2671855 1.718229115 -0.081241 178 25 SH444 444 Asp1 tRNA 41 53 97.461944 177.285663 137.3738035 2.137903923 -0.189128 178 26 SH299 299 Arg4 3' flank 26.922084 71.186418 49.054251 1.690676649 0.002712 178 27 SH8820 8820 LSR1 / U2 RNA U2 741 756 32.975157 94.25991 63.6175335 1.803576827 -0.041933 178 28 SH2650 2650 Pro4 5' flank 29.944343 94.038353 61.991348 1.79233108 -0.142519 178 29 SH7305 7305 snR66 snR66 16 32 70.86061 141.574296 106.217453 2.026195883 -0.14045 178 30 SH5611 5611 snR34 5' 29.356475 89.916132 59.6363035 1.775510716 -0.099713 178 31 SH16583 16583 YFL034C-A_6_64931_64242_INTRON_13_333 5' exon 41.129073 136.740199 41.129073 96.611126 68.8700995 1.83803071 0.093041 178 32 SH13556 13556 MT COX1 Exon 6 26.207503 111.089342 26.207503 85.881839 56.044671 1.748534324 -0.232552 178 33 SH3888 3888 RNaseP 3' 26.679394 71.123468 48.901431 1.689321568 -0.013878 178 34 SH7074 7074 snR62 3' 31.292644 86.389711 58.8411775 1.769681355 0.047664 178 35 SH17703 17703 YKL081W_11_282533_284097_INTRON_206_531 intron 29.05736 101.425827 29.05736 73.368467 51.2129135 1.709379484 0.119614 178 36 SH16344 16344 YDR500C_4_1450856_1450201_INTRON_8_396 intron 29.25865 125.359306 29.25865 97.100656 63.179653 1.800577236 -0.223097 178 37 SH19866 19866 Negative Control 31.833525 86.305097 59.069311 1.771361905 0.072117 178 38 SH21248 21248 YPL031C spliced 29.712922 90.043722 59.878322 1.777269621 -0.085753 178 39 SH12736 12736 MT COX1 Exon1 27.347491 105.518043 27.347491 79.170552 53.2590215 1.726393183 -0.070859 178 40 SH6294 6294 snR42 snR42 251 268 29.312856 79.442847 54.3778515 1.735422044 0.056468 178 41 SH11011 11011 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1941 1959 27.702765 75.608391 51.655578 1.713117225 -0.000446 178 42 SH19551 19551 CBP1 2.2 37.731606 91.206923 64.4692645 1.809352716 0.140096 178 43 SH12053 12053 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7151 7168 31.295946 87.084135 59.1900405 1.772248637 0.03542 178 44 SH3109 3109 Ser4 5' flank 27.251975 87.408378 57.3301765 1.758383279 -0.176558 178 45 SH15050 15050 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.149725 107.885094 27.149725 81.735369 54.442547 1.735938435 -0.116455 178 46 SH14639 14639 MT 21S rRNA Sce1 endonuc 26.366196 104.536654 26.366196 79.170458 52.768327 1.722373325 -0.139709 178 47 SH5370 5370 snR31 5' 43.510315 108.461212 75.9857635 1.880732232 -0.09526 178 48 SH20051 20051 YBR191W spliced 39.167907 98.130318 68.6491125 1.836634927 0.020661 178 49 SH2576 2576 Pro2 3' flank 26.440888 73.13045 49.785669 1.697104347 -0.057874 178 50 SH15851 15851 YDL075W_4_322225_322987_INTRON_58_478 intron/exon 26.722338 105.312254 26.722338 79.589916 53.156127 1.72555333 -0.119719 178 51 SH18271 18271 YML056C_13_164176_162194_INTRON_461_868 intron 26.413917 115.924334 26.413917 90.510417 58.462167 1.766874909 -0.270326 178 52 SH2460 2460 Phe5 tRNA 71 85 39.576657 95.48284 67.5297485 1.829495132 0.085615 178 53 SH8122 8122 snoRNA cluster 3; snR41 28.384169 105.010926 28.384169 77.626757 53.005463 1.724320632 0.018962 178 54 SH5025 5025 snR10 snR10 156 171 30.853438 80.616131 55.7347845 1.746126326 0.13575 178 55 SH19654 19654 SIR1 2.2 26.497579 77.759054 52.1283165 1.717073699 -0.112639 178 56 SH7040 7040 snR62 5' - 10 -9 10 28.876939 81.02308 54.9500095 1.739967772 0.008518 178 57 SH6220 6220 snR40 3' 26.726621 84.45141 55.5890155 1.744988983 -0.178778 178 58 SH17273 17273 YHR123W_8_354817_356083_INTRON_51_141 3' exon 29.101214 119.667123 29.101214 91.565909 60.3335615 1.780558963 -0.139528 178 59 SH21213 21213 YOR096W spliced 33.726967 95.493894 64.6104305 1.810302635 -0.049076 178 60 SH13981 13981 MT COB intronic 26.540715 106.283983 26.540715 80.743268 53.6419915 1.729504893 -0.146974 178 61 SH14419 14419 MT 21S rRNA 21S rRNA3 182.22876 469.232234 182.22876 288.003474 235.116117 2.371282401 -0.254692 178 62 SH19378 19378 YPR043W_16_654161_654842_INTRON_3_405 intron 30.535226 99.933334 30.535226 70.398108 50.466667 1.703004623 0.254464 178 63 SH652 652 Gln2 tRNA 46 58 35.111606 88.066934 61.58927 1.789505057 0.149726 178 64 SH8321 8321 snoRNA cluster4 intergenic 26.25729 107.554599 26.25729 82.297309 54.2772995 1.734618232 -0.18629 178 65 SH21110 21110 YNL069C spliced 28.942168 87.441152 58.19166 1.764860746 -0.075558 178 66 SH12354 12354 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.264901 112.097123 29.264901 83.832222 56.5485615 1.752421562 -0.000462 178 67 SH1075 1075 Gly3 3' flank 26.832694 77.930659 52.3816765 1.719179394 -0.090861 178 68 SH5507 5507 snR32 3' 28.581491 67.921473 48.251482 1.683510657 0.162951 178 69 SH1586 1586 Leu4 101-114 + 3' flank 101 30.690441 82.824615 56.757528 1.754023472 0.086851 178 70 SH10249 10249 RUF6 3' 28.951899 93.348034 61.1499665 1.786396223 -0.176232 178 71 SH1673 1673 Leu6 5' flank 29.277553 92.599881 60.938717 1.784893306 -0.148813 178 72 SH13057 13057 MT COX1 COX1ai2 27.721456 113.610961 27.721456 86.889505 57.3054805 1.758196158 -0.138414 178 73 SH20989 20989 YML067C spliced 30.326995 88.905381 59.616188 1.775364203 -0.038692 178 74 SH10688 10688 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 326 343 29.864132 79.54089 54.702511 1.738007262 0.090339 178 75 SH16679 16679 YGL030W_7_439087_439634_INTRON_4_233 exon/intron 37.434855 129.506379 37.434855 93.071524 65.2531895 1.814601744 0.092252 178 76 SH18362 18362 YMR033W_13_337787_339276_INTRON_31_116 3' exon 27.46096 104.675899 27.46096 78.214939 52.8379495 1.722945955 -0.050899 178 77 SH16854 16854 YGL183C_7_157071_156547_INTRON_4_86 intron/exon 29.517184 111.639853 29.517184 83.122669 56.3199265 1.750662079 0.024222 178 78 SH126 126 Arg1 6-12 6 18 29.533239 86.403083 57.968161 1.763189523 -0.030025 178 79 SH1900 1900 Lys1 5' flank 31.674665 90.697832 61.1862485 1.786653826 -0.011378 178 80 SH5996 5996 snR36 3' 31.309275 87.547374 59.4283245 1.773993486 0.027783 178 81 SH11991 11991 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6841 6860 28.90079 79.124702 54.012746 1.732496257 0.033811 178 82 SH18768 18768 YNL246W_14_185459_186348_INTRON_33_127 intron 31.383023 119.133954 31.383023 88.750931 60.066977 1.778635776 0.00981 178 83 SH6355 6355 snR43 snR43 16 33 27.556109 89.026933 58.291521 1.765605388 -0.174017 178 84 SH21477 21477 copy of SH1444 28.795706 85.784774 57.29024 1.758080642 -0.053967 178 85 SH16502 16502 YER117W_5_396765_397649_INTRON_43_513 intron 27.495032 106.400932 27.495032 79.9059 53.700466 1.729978054 -0.069977 178 86 SH14649 14649 MT 21S rRNA intronic / 21S rRNA4 38.477092 147.722836 38.477092 110.245744 74.361418 1.871347663 -0.233727 178 87 SH16410 16410 YER056C-A_5_270183_269421_INTRON_38_434 intron 27.557604 121.067843 27.557604 94.510239 61.0339215 1.785571275 -0.261434 178 88 SH10936 10936 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1566 1581 7075.014075 5236.386852 6155.700464 3.789277479 -0.121622 178 89 SH4102 4102 SRP RNA SRP RNA 401 417 29.813975 73.861095 51.837535 1.714644342 0.161347 178 90 SH6961 6961 snR58 3' 27.845787 139.441975 83.643881 1.922434175 -0.984755 178 91 SH6451 6451 snR45 snR45 101 113 32.61553 107.239015 69.9272725 1.844646589 -0.313269 178 92 SH1027 1027 Gly2 3' flank 26.146817 76.640289 51.393553 1.710908643 -0.124396 178 93 SH16573 16573 YER179W_5_548416_549512_INTRON_133_224 5' exon 30.695466 120.384798 30.695466 90.689332 60.692399 1.783134304 -0.053263 178 94 SH786 786 Glu1 5' flank 28.147067 80.704953 54.42601 1.735806497 -0.035779 178 95 SH1392 1392 Leu1 tRNA-exon/intron 31 50 27.371925 80.859566 54.1157455 1.733323646 -0.090311 178 96 SH682 682 Gln3 5' flank 26.466731 80.798881 53.632806 1.729430519 -0.152923 178 97 SH12060 12060 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7186 7201 36.183508 76.133014 56.158261 1.749413651 0.437546 178 98 SH14444 14444 MT 21S rRNA 21S rRNA3 43.080658 147.378685 43.080658 105.298027 74.1893425 1.870341522 -0.043733 178 99 SH20468 20468 YGL187C spliced 25.49444 69.728819 47.6116295 1.677713045 -0.082367 178 100 SH10178 10178 RUF6 RUF6 736 754 27.796348 81.396129 54.5962385 1.737162722 -0.067941 178 101 SH13324 13324 MT COX1 COX1-ai5a 26.72533 103.563706 26.72533 77.838376 52.281853 1.718350972 -0.097229 178 102 SH13174 13174 MT COX1 Exon4 35.00858 133.480273 35.00858 99.471693 67.2401365 1.827628586 -0.100071 178 103 SH1432 1432 Leu2 5' flank 27.771752 93.662679 60.7172155 1.783311847 -0.237138 178 104 SH8013 8013 snoRNA cluster 2 intergenic 27.571865 106.319335 27.571865 79.74747 53.6596675 1.729647977 -0.062732 179 2 SH21339 21339 YPR098C spliced 28.333416 76.475275 52.4043455 1.719367301 0.030552 179 3 SH13601 13601 MT ATP8/AAP1 ATP8 26.164061 96.693396 26.164061 71.529335 48.846698 1.688835211 -0.056901 179 4 SH11855 11855 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6161 6179 1820.514224 1410.395145 1615.454685 3.20829478 0.181766 179 5 SH557 557 Cys1 3' flank 30.708763 83.449724 57.0792435 1.756478209 0.076018 179 6 SH17267 17267 YHR123W_8_354817_356083_INTRON_51_141 exon/intron 28.675281 104.105202 28.675281 76.429921 52.552601 1.720594216 0.053744 179 7 SH2872 2872 Pro7 3' flank 30.934028 83.227013 57.0805205 1.756487925 0.089934 179 8 SH21548 21548 copy of SH4257 30.303226 96.203386 63.253306 1.801083229 -0.161785 179 9 SH5780 5780 snR35 snR35 86 103 29.512371 78.667534 54.0899525 1.7331166 0.079069 179 10 SH20121 20121 YDL079C spliced 35.710721 87.577794 61.6442575 1.789892626 0.175498 179 11 SH13643 13643 MT ATP6 ATP6 29.347396 135.88665 29.347396 107.539254 68.443325 1.8353311 -0.409193 179 12 SH20692 20692 YIL148W spliced 35.959524 96.626994 66.293259 1.82146937 -0.018244 179 13 SH3510 3510 Tyr1 3' flank 27.031766 62.014743 44.5232545 1.648586902 0.145014 179 14 SH7769 7769 snoRNA cluster1 snR76 28.738345 109.20063 28.738345 81.462285 55.100315 1.741154082 -0.00596 179 15 SH8800 8800 LSR1 / U2 RNA U2 641 657 30.497924 110.537517 70.5177205 1.848298265 -0.432166 179 16 SH7471 7471 snR71 5' 26.370299 67.67931 47.0248045 1.672326999 0.011311 179 17 SH7578 7578 snR189 5' 27.98389 66.782563 47.3832265 1.67562463 0.138485 179 18 SH1029 1029 Gly2 3' flank 27.795875 76.588615 52.192245 1.717605978 -0.00702 179 19 SH10253 10253 RUF6 3' 28.743796 83.333311 56.0385535 1.748486916 -0.028338 179 20 SH15637 15637 YBR186W_2_600511_602318_INTRON_1552_1664 intron 29.14643 103.441553 29.14643 75.295123 52.2207765 1.717843325 0.099428 179 21 SH3031 3031 Ser2 3' flank 28.675068 81.145107 54.9100875 1.739652136 -0.006207 179 22 SH12175 12175 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7761 7776 78.755054 123.327947 101.0415005 2.004499787 0.224054 179 23 SH4720 4720 snR4 snR4 136 152 32.792409 88.137047 60.464728 1.781502104 0.079344 179 24 SH1548 1548 Leu4 5' flank 29.03427 84.177974 56.606122 1.752863403 -0.01949 179 25 SH17733 17733 YKL156W_11_158616_159214_INTRON_4_353 intron 29.494362 99.353899 29.494362 70.859537 50.1769495 1.700504255 0.182576 179 26 SH2777 2777 Pro6 5' flank 29.178773 86.598565 57.888669 1.762593564 -0.049682 179 27 SH17205 17205 YHR039C-A_8_187670_187164_INTRON_4_165 exon/intron 32.873115 118.456997 32.873115 86.583882 59.7284985 1.776181597 0.110138 179 28 SH5234 5234 snR30 snR30 21 36 36.455556 88.040459 62.2480075 1.794125455 0.182442 179 29 SH10482 10482 RUF8 RUF8 336 350 52.94751 104.501016 78.724263 1.896108604 0.15206 179 30 SH11419 11419 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3981 3998 40.524354 101.364318 70.944336 1.850917728 -0.018209 179 31 SH19523 19523 ACT1 27.47892 78.38024 52.92958 1.723698448 -0.05178 179 32 SH11845 11845 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6111 6128 388.353049 303.23839 345.7957195 2.538819613 0.611334 179 33 SH12531 12531 MT_ORF6 + ORF7 (hypothetical) ORF6/7 26.241763 95.19112 26.241763 69.949357 48.09556 1.682104986 -0.029757 179 34 SH11225 11225 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3011 3032 34.321348 92.187048 63.254198 1.801089354 0.037422 179 35 SH1836 1836 Leu9 5' flank 31.331254 85.426648 58.378951 1.766256287 0.066657 179 36 SH19057 19057 YOR234C_15_779404_778554_INTRON_20_546 intron 27.314207 106.317392 27.314207 80.003185 53.658696 1.729640114 -0.083628 179 37 SH2892 2892 Pro8 5' flank 30.034952 83.939247 56.9870995 1.755776553 0.037275 179 38 SH12555 12555 MT_15S 5' 27.803402 106.096026 27.803402 79.292624 53.548013 1.72874336 -0.041249 179 39 SH4289 4289 telomerase RNA telomerase 481 498 29.892225 92.439275 61.16575 1.786508305 -0.118319 179 40 SH9292 9292 RUF1 RUF1 36 53 29.216854 75.059078 52.137966 1.717154085 0.107119 179 41 SH4674 4674 snR4 5' 26.349604 83.865117 55.1073605 1.74120961 -0.198572 179 42 SH3129 3129 Ser4 tRNA 51 66 37.67002 92.074098 64.872059 1.812057682 0.119484 179 43 SH15061 15061 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.021471 107.872802 28.021471 80.851331 54.436401 1.735889405 -0.046019 179 44 SH5334 5334 snR30 snR30 521 533 29.555519 76.158589 52.857054 1.723102954 0.114273 179 45 SH16759 16759 YGL087C_7_346902_346404_INTRON_12_96 exon/intron 26.810237 109.085349 26.810237 83.275112 55.0426745 1.740699528 -0.158849 179 46 SH1583 1583 Leu4 tRNA 86 102 43.937288 104.908499 74.4228935 1.871706551 -0.01934 179 47 SH10534 10534 RUF8 RUF8 596 615 27.58134 77.651353 52.6163465 1.721120689 -0.035417 179 48 SH10158 10158 RUF6 RUF6 636 657 27.765185 80.239082 54.0021335 1.732410918 -0.055721 179 49 SH8920 8920 LSR1 / U2 RNA 3' 35.006383 82.879344 58.9428635 1.77043123 0.261937 179 50 SH18926 18926 YOL121C_15_92849_92025_INTRON_21_410 intron 27.207631 108.415347 27.207631 82.207716 54.7076735 1.738048246 -0.11821 179 51 SH16428 16428 YER074W_5_306319_307192_INTRON_4_469 intron 32.383938 121.486304 32.383938 90.102366 61.243152 1.787057534 0.028451 179 52 SH6238 6238 snR42 5' 27.838215 90.677298 59.2577565 1.772745205 -0.183828 179 53 SH9927 9927 RUF5-1 RUF5-1 441 458 30.298889 96.143544 63.2212165 1.800862848 -0.161014 179 54 SH864 864 Glu2 3' flank 26.096114 71.91606 49.006087 1.690250027 -0.067083 179 55 SH20380 20380 YFL034C-A spliced 37.254523 95.916076 66.5852995 1.823378358 0.026528 179 56 SH5713 5713 snR34 snR34 486 501 28.011727 76.424096 52.2179115 1.717819498 0.009708 179 57 SH9273 9273 RUF1 5' 27.983082 81.943867 54.9634745 1.740074179 -0.062041 179 58 SH5377 5377 snR31 5' 29.370668 79.320579 54.3456235 1.735164576 0.061723 179 59 SH7586 7586 snR189 snR189 1 22 30.87724 87.631538 59.254389 1.772720524 0.007699 179 60 SH3229 3229 Thr1 tRNA 1 15 82.866451 137.115158 109.9908045 2.041356379 0.085085 179 61 SH11568 11568 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4726 4742 132.754238 176.475689 154.6149635 2.189251522 0.182946 179 62 SH204 204 Arg2 3' flank 29.30937 91.023762 60.166566 1.779355225 -0.120802 179 63 SH20785 20785 YKL081W spliced 26.839584 65.547612 46.193598 1.664581791 0.075991 179 64 SH19005 19005 YOR122C_15_552886_552297_INTRON_14_222 3' exon 31.148636 115.75696 31.148636 85.608324 58.37848 1.766252783 0.055547 179 65 SH5671 5671 snR34 snR34 276 295 28.71672 87.792962 58.254841 1.765332021 -0.092236 179 66 SH5007 5007 snR10 snR10 66 82 31.071062 87.253133 59.1620975 1.772043563 0.022769 179 67 SH10060 10060 RUF6 RUF6 146 166 28.603846 80.715973 54.6599095 1.737668908 -0.005584 179 68 SH235 235 Arg3 31-43 31 43 37.174707 84.949829 61.062268 1.785772931 0.271706 179 69 SH11109 11109 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2431 2449 86.993692 137.895031 112.4443615 2.050937683 0.12685 179 70 SH7503 7503 snR71 3' 26.565014 71.521609 49.0433115 1.690579787 -0.027509 179 71 SH10551 10551 RUF8 RUF8 681 698 26.799616 75.035457 50.9175365 1.706867383 -0.056599 179 72 SH18221 18221 YML026C_13_223828_222987_INTRON_48_448 5' exon 30.665342 112.85818 30.665342 83.192838 56.92909 1.755334242 0.078894 179 73 SH18634 18634 YNL096C_14_444312_443395_INTRON_145_489 intron 38.714853 133.857007 38.714853 96.142154 67.4285035 1.828843521 0.053307 179 74 SH17159 17159 YHR016C_8_138446_136872_INTRON_48_215 5' exon 27.51244 121.965349 27.51244 95.452909 61.4826745 1.788752751 -0.278983 179 75 SH21732 21732 copy of SH12132 27.607094 78.854869 53.2309815 1.726164474 -0.049057 179 76 SH19108 19108 YOR312C_15_901173_900242_INTRON_2_427 intron 27.646278 117.49727 27.646278 90.850992 59.248635 1.772678349 -0.196048 179 77 SH9516 9516 RUF3 5' 27.594855 73.02759 50.3112225 1.70166487 0.025742 179 78 SH20405 20405 YFR031C-A spliced 55.611645 105.503594 80.5576195 1.906106624 0.176883 179 79 SH16910 16910 YGL232W_7_62074_63001_INTRON_58_115 3' exon 28.554282 93.373737 28.554282 65.819455 47.1868685 1.673821157 0.191283 179 80 SH19090 19090 YOR312C_15_901173_900242_INTRON_2_427 5' exon 29.259726 108.140144 29.259726 79.880418 54.570072 1.736954527 0.047551 179 81 SH11857 11857 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6171 6189 8376.985262 5851.945139 7114.465201 3.852142259 -0.077596 179 82 SH13096 13096 MT COX1 COX1ai3 29.01713 97.68044 29.01713 69.66331 49.34022 1.693201082 0.167785 179 83 SH11976 11976 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6766 6782 1050.121499 759.625617 904.873558 2.956587898 0.427532 179 84 SH5390 5390 snR31 snR31 16 33 27.480112 78.625322 53.052717 1.72470763 -0.054824 179 85 SH16008 16008 YDL137W_4_216158_217074_INTRON_1_332 intron 33.91555 131.134368 33.91555 98.218818 66.067184 1.819985796 -0.101444 179 86 SH10666 10666 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 216 234 33.819419 85.587029 59.703224 1.775997784 0.166036 179 87 SH1759 1759 Leu7 3' flank 25.119204 66.697058 45.908131 1.661889612 -0.066115 179 88 SH16820 16820 YGL178W_7_167356_170575_INTRON_4_643 intron 29.261288 103.858951 29.261288 75.597663 52.4294755 1.719575513 0.102823 179 89 SH17305 17305 YHR203C_8_505526_504472_INTRON_15_283 intron 26.9858 111.276007 26.9858 85.290207 56.1380035 1.749256963 -0.17049 179 90 SH2512 2512 Pro1 tRNA 51 63 1017.413882 1148.786668 1083.100275 3.034668666 -0.264153 179 91 SH12172 12172 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7746 7769 26.475704 62.715859 44.5957815 1.649293779 0.094738 179 92 SH20177 20177 YDL189W spliced 39.018729 113.202416 76.1105725 1.881444989 -0.275426 179 93 SH21289 21289 YPL175W spliced 30.476177 103.138909 66.807543 1.8248255 -0.292095 179 94 SH1805 1805 Leu8 tRNA-intron/exon 51 70 28.508139 81.989032 55.2485855 1.742321163 -0.027567 179 95 SH8028 8028 snoRNA cluster 2 snR55 28.244977 102.969057 28.244977 75.72408 51.9845285 1.715874109 0.034545 179 96 SH9589 9589 RUF3 RUF3 331 350 27.673605 69.721092 48.6973485 1.687505315 0.075692 179 97 SH15636 15636 YBR186W_2_600511_602318_INTRON_1552_1664 intron 27.285959 82.469779 27.285959 56.18382 41.7348895 1.620499268 0.262854 179 98 SH8863 8863 LSR1 / U2 RNA U2 956 973 27.540913 74.724168 51.1325405 1.708697371 -0.000064 179 99 SH3784 3784 Val4 3' flank 32.88837 87.384567 60.1364685 1.779137921 0.096519 179 100 SH19800 19800 Negative Control 29.036424 81.677338 55.356881 1.743171612 0.010843 179 101 SH12721 12721 MT COX1 5' 26.415504 93.431106 26.415504 68.015602 47.215553 1.674085081 0.009853 179 102 SH1457 1457 Leu2 tRNA-intron/exon 56 72 47.927772 89.442492 68.685132 1.836862737 0.378667 179 103 SH3540 3540 Tyr2 5' flank 31.626606 86.180712 58.903659 1.770142273 0.06562 179 104 SH6528 6528 snR46 snR46 131 150 34.075843 103.392539 68.734191 1.837172825 -0.201669 180 2 SH21810 21810 copy of SH15490 30.43507 97.150746 63.792908 1.8047724 -0.171789 180 3 SH2514 2514 Pro1 61-72 + 3' flank 61 30.268698 90.011187 60.1399425 1.779163009 -0.06039 180 4 SH2173 2173 Met2 5' flank - tRNA8 8 36.932942 94.956498 65.94472 1.819180029 0.039999 180 5 SH8231 8231 snoRNA cluster 3; 3' 32.455908 120.162707 32.455908 88.706799 60.5813535 1.782338972 0.055571 180 6 SH17476 17476 YJL001W_10_434855_435618_INTRON_66_181 intron 28.296525 98.698144 28.296525 71.401619 49.849072 1.697657078 0.095705 180 7 SH21770 21770 copy of SH13810 26.215431 68.727899 47.471665 1.676434464 -0.014786 180 8 SH14258 14258 MT VAR1 includes 5’ processing site 5' 28.193302 102.309288 28.193302 75.115986 51.654644 1.713109373 0.039168 180 9 SH21919 21919 copy of SH20199 34.399247 91.424426 62.9118365 1.798732363 0.056228 180 10 SH13424 13424 MT COX1 intronic 29.811812 116.379761 29.811812 87.567949 58.6898805 1.768563225 -0.038176 180 11 SH18975 18975 YOR096W_15_505793_506766_INTRON_145_545 intron 32.025761 116.588058 32.025761 85.562297 58.794029 1.769333222 0.093547 180 12 SH19353 19353 YPL249C-A_16_76239_75699_INTRON_17_254 intron 27.583225 85.149513 27.583225 58.566288 43.0747565 1.634222831 0.240903 180 13 SH19466 19466 ADH1 33.963548 91.077445 62.5204965 1.796022418 0.053055 180 14 SH21404 21404 Pro8 spliced 64.664929 119.860192 92.2625605 1.965025503 0.075889 180 15 SH19936 19936 YBL027W spliced 29.021416 86.288434 57.654925 1.760836412 -0.051369 180 16 SH3918 3918 RNase MRP RNaseMRP 6 22 53.124257 128.544444 90.8343505 1.958250115 -0.24997 180 17 SH5302 5302 snR30 snR30 361 373 31.552717 106.21839 68.8855535 1.838128152 -0.322167 180 18 SH12716 12716 MT ORF 8 (hypothetical) 3' 25.779154 89.102263 25.779154 64.323109 45.0511315 1.653705703 0.019189 180 19 SH3005 3005 Ser2 5' flank - tRNA5 5 28.799454 90.469349 59.6344015 1.775496865 -0.134841 180 20 SH13345 13345 MT COX1 COX1-ai5a 26.986788 101.37991 26.986788 75.393122 51.189955 1.709184748 -0.047759 180 21 SH21868 21868 copy of SH19503 26.755733 76.123914 51.4398235 1.71129947 -0.073574 180 22 SH16796 16796 YGL137W_7_249872_252741_INTRON_19_218 5' exon 42.400888 143.398361 42.400888 101.997473 72.1991805 1.858532268 0.00723 180 23 SH8792 8792 LSR1 / U2 RNA U2 601 620 26.265921 68.15904 47.2124805 1.674056818 -0.003105 180 24 SH11462 11462 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4196 4212 63.33045 114.140878 88.735664 1.948098203 0.147716 180 25 SH3303 3303 Thr2 3' flank 30.414622 82.876787 56.6457045 1.753166982 0.073794 180 26 SH3069 3069 Ser3 tRNA 41 59 29.041093 88.998854 59.0199735 1.77099901 -0.098307 180 27 SH7864 7864 snoRNA cluster1 intergenic/snR73 26.077572 99.127549 26.077572 74.049977 50.0637745 1.69952359 -0.09651 180 28 SH18560 18560 YMR292W_13_854795_855293_INTRON_23_104 intron 27.543732 105.106124 27.543732 78.562392 53.053062 1.724710455 -0.049666 180 29 SH12361 12361 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.399359 104.853274 27.399359 78.453915 52.926637 1.723674299 -0.058184 180 30 SH15292 15292 MT 9S rRNA 9S 25.420781 99.637083 25.420781 75.216302 50.3185415 1.701728044 -0.160631 180 31 SH20759 20759 YJR094W-A spliced 130.083251 212.263914 171.1735825 2.23343674 -0.154156 180 32 SH7969 7969 snoRNA cluster 2 5' 34.712508 131.787606 34.712508 98.075098 66.393803 1.822127546 -0.078618 180 33 SH433 433 Asp1 5' flank - tRNA6 5' flank 6 25.850209 78.545141 52.197675 1.717651159 -0.169926 180 34 SH2127 2127 Met1 tRNA 21 35 42.121482 88.994806 65.558144 1.81662665 0.282032 180 35 SH17730 17730 YKL156W_11_158616_159214_INTRON_4_353 intron 26.758579 102.467008 26.758579 76.708429 51.733504 1.713771895 -0.08071 180 36 SH8153 8153 snoRNA cluster 3; intergenic/snR70 29.73852 104.261952 29.73852 75.523432 52.630976 1.721241424 0.134289 180 37 SH4698 4698 snR4 snR4 26 45 27.755075 68.539928 48.1475015 1.682573755 0.097749 180 38 SH4922 4922 snR9 snR9 16 35 32.402378 89.476509 60.9394435 1.784898484 0.039996 180 39 SH12882 12882 MT COX1 COX1ai1 27.18333 99.109987 27.18333 72.926657 50.0549935 1.699447409 -0.001867 180 40 SH8833 8833 LSR1 / U2 RNA U2 806 820 154.413034 215.056085 184.7345595 2.266548149 0.029384 180 41 SH16194 16194 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 43.123652 154.644558 43.123652 112.520906 77.822279 1.891103945 -0.177444 180 42 SH10218 10218 RUF6 RUF6 936 953 26.473903 75.621196 51.0475495 1.707974899 -0.087609 180 43 SH2379 2379 Phe4 5' flank 27.022168 72.336398 49.679283 1.696175319 -0.00552 180 44 SH20685 20685 YIL111W spliced 27.051087 71.089657 49.070372 1.69081935 0.013223 180 45 SH13065 13065 MT COX1 intronic 2172.525234 3739.95007 2172.525234 1568.424836 1870.475035 3.271951916 0.247017 180 46 SH8953 8953 snR17a / U3a U3a 51 68 28.10487 90.182774 59.143822 1.771909386 -0.162609 180 47 SH2260 2260 Phe1 3' flank 30.051124 88.356199 59.2036615 1.772348567 -0.041338 180 48 SH5359 5359 snR30 3' 30.212095 90.564968 60.3885315 1.780954469 -0.072384 180 49 SH7562 7562 snR79 3' 25.982701 75.083348 50.5330245 1.703575292 -0.116828 180 50 SH10882 10882 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1296 1313 9812.077876 5059.243433 7435.660655 3.871319561 0.358765 180 51 SH668 668 Gln2 3' flank 47.55473 105.908677 76.7317035 1.88497484 0.029463 180 52 SH9551 9551 RUF3 RUF3 141 157 25.155961 63.981115 44.568538 1.649028388 -0.021135 180 53 SH7343 7343 snR68 5' 27.511515 67.862511 47.687013 1.67840012 0.090306 180 54 SH14115 14115 MT COB intronic 25.55358 104.423765 25.55358 79.870185 52.7118825 1.721908526 -0.208205 180 55 SH10695 10695 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 361 378 29.798583 88.057614 58.9280985 1.770322427 -0.047396 180 56 SH12466 12466 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 12759.28848 28511.94373 12759.28848 15753.65525 14256.47187 4.154012061 -1.09548 180 57 SH12732 12732 MT COX1 Exon1 54.049421 152.258504 54.049421 99.209083 76.629252 1.884394586 0.273989 180 58 SH7897 7897 snoRNA cluster1 intergenic 27.442658 111.130534 27.442658 84.687876 56.065267 1.748693895 -0.131763 180 59 SH10973 10973 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1751 1766 13521.94769 9885.499161 11703.72343 4.06832405 -0.283045 180 60 SH5382 5382 snR31 5' 30.88053 81.625249 56.2528895 1.750144835 0.11768 180 61 SH9942 9942 RUF5-1 RUF5-1 516 532 31.492595 77.769429 54.631012 1.737439246 0.212928 180 62 SH4400 4400 telomerase RNA telomerase 1036 1054 27.135909 74.439429 50.787669 1.70575828 -0.024931 180 63 SH9277 9277 RUF1 5' 26.912393 80.55707 53.7347315 1.730255083 -0.118459 180 64 SH10847 10847 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1121 1138 145.550544 164.840139 155.1953415 2.190878681 0.408032 180 65 SH28 28 Ala1 tRNA 36 48 133.405987 186.713952 160.0599695 2.20428273 0.093124 180 66 SH16032 16032 YDL191W_4_117665_118518_INTRON_4_494 intron 32.760041 114.936331 32.760041 83.17629 57.9681655 1.763189557 0.167639 180 67 SH8429 8429 snoRNA cluster 5 intergenic 28.364734 108.38858 28.364734 81.023846 54.69429 1.737941989 -0.025212 180 68 SH490 490 Asp2 tRNA 11 28 316.432859 477.793515 397.113187 2.598914309 -0.382321 180 69 SH10356 10356 RUF7 RUF7 391 406 46.523404 104.106788 75.315096 1.876882034 0.045239 180 70 SH4297 4297 telomerase RNA telomerase 521 537 28.740965 80.025745 54.383355 1.735465996 0.012025 180 71 SH17686 17686 YKL006W_11_431544_432358_INTRON_130_527 intron 26.667632 95.98189 26.667632 70.314258 48.490945 1.685660648 -0.003747 180 72 SH9731 9731 RUF4 RUF4 431 443 35.038323 88.868933 61.953628 1.792066744 0.129531 180 73 SH14178 14178 MT COB intron/exon6 32.055039 119.682361 32.055039 88.627322 60.3411805 1.780613802 0.040323 180 74 SH3768 3768 Val4 66-73 + 3' flank 66 27.545509 68.151 47.8482545 1.679866099 0.088614 180 75 SH578 578 Gln1 5' flank 31.892479 73.390332 52.6414055 1.721327476 0.294729 180 76 SH14850 14850 MT tRNA Ser2; tRNA Arg2 5' 27.454607 95.072023 27.454607 68.617416 48.0360115 1.68156694 0.075703 180 77 SH14555 14555 MT 21S rRNA 21S rRNA3 31.718601 118.366368 31.718601 87.647767 59.683184 1.775851984 0.043395 180 78 SH19892 19892 Positive Control 8 29.630413 83.461015 56.545714 1.752399692 0.027369 180 79 SH13031 13031 MT COX1 COX1ai2 29.576734 116.457784 29.576734 87.88105 58.728892 1.768851807 -0.054293 180 80 SH8061 8061 snoRNA cluster 2 intergenic/snR61 26.988179 103.879301 26.988179 77.891122 52.4396505 1.719659789 -0.079466 180 81 SH13788 13788 MT COB intronic 30.810022 131.384998 30.810022 101.574976 66.192499 1.820808778 -0.251755 180 82 SH21353 21353 YPR187W spliced 33.063694 92.728183 62.8959385 1.798622602 -0.006372 180 83 SH13122 13122 MT COX1 COX1ai3 31.453659 113.505363 31.453659 83.051704 57.2526815 1.757795832 0.115492 180 84 SH10621 10621 RUF8 3' 34.096592 86.885945 60.4912685 1.781692692 0.152069 180 85 SH9087 9087 snR14 / U4 RNA U4 51 68 27.485586 64.980678 46.233132 1.664953315 0.13013 180 86 SH6914 6914 snR58 5' 29.497678 88.326197 58.9119375 1.770203306 -0.065691 180 87 SH21604 21604 copy of SH6880 29.168188 74.506021 51.8371045 1.714640735 0.111382 180 88 SH13092 13092 MT COX1 COX1ai3 28.738291 103.584332 28.738291 75.846041 52.292166 1.718436631 0.065558 180 89 SH16925 16925 YGR001C_7_498029_497128_INTRON_36_97 5' exon 52.824532 155.569401 52.824532 103.744869 78.2847005 1.893676894 0.164451 180 90 SH12351 12351 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.197113 111.921485 29.197113 83.724372 56.4607425 1.751746585 -0.003542 180 91 SH12157 12157 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7671 7689 132.734621 196.808862 164.7717415 2.216882732 -0.002071 180 92 SH8564 8564 snR19 / U1 RNA U1 316 332 36.670305 77.120794 56.8955495 1.755078296 0.435491 180 93 SH2305 2305 Phe2 3' flank 28.237454 59.443283 43.8403685 1.641874196 0.269614 180 94 SH14450 14450 MT 21S rRNA 21S rRNA3 82.426712 282.793995 82.426712 201.367283 141.8969975 2.151973206 -0.602691 180 95 SH12505 12505 MT_tRNA Pro 3' 28.686654 140.689188 28.686654 113.002534 70.844594 1.850306716 -0.529285 180 96 SH4681 4681 snR4 5' 30.646194 97.983351 64.3147725 1.808310738 -0.183209 180 97 SH18957 18957 YOL127W_15_80347_81189_INTRON_14_427 intron 28.342369 112.300354 28.342369 84.957985 56.650177 1.753201271 -0.074169 180 98 SH15916 15916 YDL083C_4_307788_306925_INTRON_25_456 intron 28.692315 93.68156 28.692315 65.989245 47.34078 1.675235409 0.198098 180 99 SH15019 15019 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.229205 103.88114 29.229205 75.651935 52.44057 1.719667404 0.100038 180 100 SH10623 10623 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 1 21 29.458868 90.501243 59.9800555 1.778006863 -0.105087 180 101 SH15677 15677 YBR191W_2_606228_607098_INTRON_12_399 intron 28.982303 115.841315 28.982303 87.859012 58.4206575 1.76656644 -0.081079 180 102 SH9811 9811 RUF4 3' 28.103077 71.958867 50.030972 1.69923894 0.075035 180 103 SH18290 18290 YML073C_13_124172_123227_INTRON_16_430 5' exon 31.982276 126.380122 31.982276 95.397846 63.690061 1.804071665 -0.092432 180 104 SH15094 15094 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " intronic / orf2exon2 26.263809 94.918081 26.263809 69.654272 47.9590405 1.680870486 -0.024083 181 2 SH11025 11025 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2011 2026 340.56702 297.557901 319.0624605 2.50387571 0.475216 181 3 SH10895 10895 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1361 1379 240.022173 233.015702 236.5189375 2.373865919 0.435076 181 4 SH15940 15940 YDL115C_4_255042_253994_INTRON_1_88 3' exon 29.780169 106.850212 29.780169 78.070043 53.925106 1.731791007 0.103722 181 5 SH10614 10614 RUF8 3' 27.464649 77.09608 52.2803645 1.718338607 -0.03622 181 6 SH1860 1860 Leu9 tRNA-intron/exon 41 60 27.587472 73.579997 50.5837345 1.704010889 0.017996 181 7 SH9783 9783 RUF4 RUF4 691 713 27.905403 75.244161 51.574782 1.712437401 0.018121 181 8 SH18948 18948 YOL127W_15_80347_81189_INTRON_14_427 intron 30.400286 119.456676 30.400286 90.05639 60.228338 1.779800879 -0.055361 181 9 SH15946 15946 YDL125C_4_239605_239018_INTRON_98_208 intron 28.302111 112.22067 28.302111 84.918559 56.610335 1.752895725 -0.076383 181 10 SH4883 4883 snR8 3' 28.312514 66.814836 47.563675 1.677275403 0.160505 181 11 SH7521 7521 snR79 5' 25.966701 70.171472 48.0690865 1.681865869 -0.053092 181 12 SH1902 1902 Lys1 5' flank 25.711669 72.67383 49.1927495 1.691901097 -0.105723 181 13 SH21400 21400 Pro8 spliced 32.277765 70.390312 51.3340385 1.710405432 0.359142 181 14 SH6240 6240 snR42 5' 28.021189 73.604112 50.8126505 1.705971849 0.047722 181 15 SH13728 13728 MT COB Exon1 28.068281 105.286402 28.068281 78.218121 53.143201 1.72544771 -0.009723 181 16 SH3308 3308 Thr2 3' flank 27.88054 82.966419 55.4234795 1.743693787 -0.081375 181 17 SH21534 21534 copy of SH3940 25.493176 70.556503 48.0248395 1.681465922 -0.093785 181 18 SH17172 17172 YHR021C_8_148660_147862_INTRON_4_553 5' exon 34.147917 109.100863 34.147917 75.952946 55.0504315 1.740760727 0.363713 181 19 SH8051 8051 snoRNA cluster 2 intergenic 27.999097 121.064362 27.999097 94.065265 61.032181 1.78555889 -0.232861 181 20 SH12712 12712 MT ORF 8 (hypothetical) ORF8 26.436158 95.615347 26.436158 70.179189 48.3076735 1.684016122 -0.018691 181 21 SH6216 6216 snR40 3' 31.219965 95.135564 63.1777645 1.800564255 -0.107461 181 22 SH18670 18670 YNL112W_14_413636_416278_INTRON_1274_2275 intron 26.486915 97.002878 26.486915 71.515963 49.001439 1.690208834 -0.033103 181 23 SH15518 15518 YBR048W_2_332790_333771_INTRON_46_556 intron 28.577771 112.615057 28.577771 85.037286 56.8075285 1.754405895 -0.059519 181 24 SH11931 11931 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6541 6558 141.704698 191.738359 166.7215285 2.221991683 0.120065 181 25 SH19806 19806 Negative Control 28.727372 78.014126 53.370749 1.727303298 0.036623 181 26 SH7443 7443 snR69 3' 26.346477 71.337503 48.84199 1.68879335 -0.040944 181 27 SH7565 7565 snR79 3' 25.682203 74.812779 50.247491 1.701114381 -0.135766 181 28 SH9657 9657 RUF4 RUF4 61 73 40.186413 92.150663 66.168538 1.820651539 0.171462 181 29 SH1173 1173 His1 3' flank 27.309193 79.580761 53.444977 1.727906895 -0.078673 181 30 SH11222 11222 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2996 3018 25.748814 68.889526 47.31917 1.675037118 -0.051627 181 31 SH10815 10815 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 961 981 18897.95337 12539.40718 15718.68027 4.19641608 -0.22225 181 32 SH10745 10745 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 611 626 32.727918 84.12743 58.427674 1.766618597 0.148737 181 33 SH16766 16766 YGL103W_7_310965_311925_INTRON_50_560 5' exon 32.783846 124.184399 32.783846 92.400553 62.5921995 1.796520213 -0.006449 181 34 SH11937 11937 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6571 6587 129.135939 172.387102 150.7615205 2.178290509 0.189931 181 35 SH13365 13365 MT COX1 intronic 26.797237 99.130733 26.797237 73.333496 50.0653665 1.6995374 -0.034754 181 36 SH9677 9677 RUF4 RUF4 161 177 34.246873 88.721586 61.4842295 1.788763735 0.113373 181 37 SH18636 18636 YNL096C_14_444312_443395_INTRON_145_489 intron 27.398265 100.968167 27.398265 74.569902 50.9840835 1.707434617 -0.008081 181 38 SH1320 1320 Ile3 5' flank 27.118849 85.771957 56.445403 1.751628578 -0.166863 181 39 SH3977 3977 RNase MRP RNaseMRP 301 316 30.929397 84.518142 57.7237695 1.761354684 0.065919 181 40 SH9398 9398 RUF1 3' 26.8995 69.440637 48.1700685 1.682777264 0.024922 181 41 SH10327 10327 RUF7 RUF7 246 263 28.09282 88.183733 58.1382765 1.764462153 -0.128506 181 42 SH3700 3700 Val3 5' flank 30.992127 95.95627 63.4741985 1.802597226 -0.131164 181 43 SH1152 1152 His1 5' flank - tRNA2 2 26.763793 67.140213 46.952003 1.671654124 0.047509 181 44 SH9261 9261 snR6 / U6 RNA 3' 26.455111 74.070836 50.2629735 1.701248177 -0.069099 181 45 SH1189 1189 Ile1 5' flank 37.393434 101.157152 69.275293 1.840578371 -0.080145 181 46 SH18259 18259 YML056C_13_164176_162194_INTRON_461_868 intron 28.310015 103.139264 28.310015 75.829249 52.069632 1.716584508 0.037489 181 47 SH5961 5961 snR36 snR36 261 279 28.386605 75.711224 52.0489145 1.716411677 0.044139 181 48 SH702 702 Gln3 tRNA 41 53 37.59829 96.284363 66.9413265 1.825694314 0.026181 181 49 SH19908 19908 YAL001C spliced 28.573761 81.021095 54.797428 1.738760175 -0.011344 181 50 SH3974 3974 RNase MRP RNaseMRP 286 298 66.748748 124.958555 95.8536515 1.981608662 0.028544 181 51 SH5447 5447 snR31 3' 25.13813 81.982346 53.560238 1.728842498 -0.264818 181 52 SH17345 17345 YIL018W_9_316766_317930_INTRON_5_404 intron 26.869393 110.556711 26.869393 84.687318 55.7783555 1.746465706 -0.171533 181 53 SH10931 10931 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1541 1554 47.566284 95.068733 71.3175085 1.853196163 0.248443 181 54 SH3612 3612 Val1 tRNA 56 68 35.820143 87.65275 61.7364465 1.790541628 0.176375 181 55 SH2972 2972 Ser1 3' flank 27.241181 80.000094 53.6206375 1.729331973 -0.088633 181 56 SH3453 3453 Trp1 96-106 + 3' flank 96 31.425541 77.527909 54.476725 1.736210991 0.212027 181 57 SH5584 5584 snR33 3' 27.089785 78.26722 52.6785025 1.721633421 -0.077209 181 58 SH11755 11755 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5661 5678 268.442494 338.532109 303.4873015 2.482140524 -0.034876 181 59 SH18787 18787 YNL301C_14_64561_63569_INTRON_113_544 intron 27.830894 104.830427 27.830894 77.999533 52.9152135 1.723580553 -0.022925 181 60 SH17331 17331 YIL018W_9_316766_317930_INTRON_5_404 5' exon 34.964609 126.816702 34.964609 92.852093 63.908351 1.805557612 0.038697 181 61 SH13113 13113 MT COX1 COX1ai3 26.133223 101.001458 26.133223 75.868235 51.000729 1.707576384 -0.115682 181 62 SH915 915 Glu3 3' flank 26.227111 74.781902 50.5045065 1.703330132 -0.094937 181 63 SH6185 6185 snR40 5' - 5 -14 5 28.220189 75.924983 52.072586 1.716609146 0.030238 181 64 SH7996 7996 snoRNA cluster 2 intergenic 27.760024 108.616908 27.760024 81.856884 54.808454 1.738847552 -0.076057 181 65 SH5653 5653 snR34 snR34 186 203 47.81515 118.900247 83.3576985 1.920945715 -0.196179 181 66 SH13490 13490 MT COX1 intronic 25.741561 107.392716 25.741561 82.651155 54.196358 1.733970103 -0.227962 181 67 SH16364 16364 YEL012W_5_131772_132551_INTRON_6_128 intron 28.52492 113.862032 28.52492 86.337112 57.431016 1.759146499 -0.078195 181 68 SH17694 17694 YKL006W_11_431544_432358_INTRON_130_527 intron 28.731489 109.424207 28.731489 81.692718 55.2121035 1.742034293 -0.009237 181 69 SH14302 14302 MT VAR1 includes 5’ processing site VAR1 26.52668 92.853383 26.52668 67.326703 46.9266915 1.671419936 0.02771 181 70 SH17956 17956 YLR185W_12_522665_523290_INTRON_8_366 intron 33.64908 128.534486 33.64908 95.885406 64.767243 1.81135541 -0.05936 181 71 SH19210 19210 YPL081W_16_404945_406039_INTRON_8_508 intron 26.840161 107.657001 26.840161 81.81684 54.3285005 1.735027718 -0.139059 181 72 SH19862 19862 Negative Control 29.760257 93.833307 61.796782 1.79096586 -0.147396 181 73 SH17050 17050 YGR214W_7_920570_921783_INTRON_91_545 intron 34.714097 123.840564 34.714097 90.126467 62.420282 1.795325726 0.093052 181 74 SH5087 5087 snR11 snR11 36 53 27.741682 61.883537 44.8126095 1.651400234 0.195621 181 75 SH3125 3125 Ser4 tRNA 31 46 34.002403 87.987675 60.995039 1.785294513 0.124117 181 76 SH5892 5892 snR36 5' 31.481349 96.938225 64.209787 1.807601229 -0.138452 181 77 SH20094 20094 YDL029W spliced 37.868027 99.153819 68.510923 1.835759819 -0.02851 181 78 SH8085 8085 snoRNA cluster 2 3' 27.189859 92.577005 27.189859 66.387146 46.7885025 1.670139146 0.088749 181 79 SH18874 18874 YNR053C_14_723108_721117_INTRON_811_1341 intron 30.355738 110.165668 30.355738 80.80993 55.582834 1.744940686 0.105255 181 80 SH14305 14305 MT VAR1 includes 5’ processing site VAR1 26.681107 101.803837 26.681107 76.12273 51.4019185 1.710979329 -0.078938 181 81 SH20304 20304 YER003C spliced 39.164151 92.519642 65.8418965 1.818502332 0.14202 181 82 SH12630 12630 MT_15S MT_15S 26.721838 91.389059 26.721838 65.667221 46.1945295 1.664590548 0.065774 181 83 SH12308 12308 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.580398 115.693028 29.580398 87.11263 58.346514 1.766014914 -0.040541 181 84 SH1231 1231 Ile1 3' flank 27.917596 87.928417 57.9230065 1.762851096 -0.137029 181 85 SH8767 8767 LSR1 / U2 RNA U2 476 490 54.320571 115.563439 84.942005 1.929122508 -0.022688 181 86 SH16825 16825 YGL178W_7_167356_170575_INTRON_4_643 intron 95.190502 229.917379 95.190502 135.726877 115.4586895 2.062426624 0.254361 181 87 SH11113 11113 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2451 2466 66.109987 123.371674 94.7408305 1.976537187 0.043184 181 88 SH4636 4636 snR3 snR3 96 112 32.981831 93.324402 63.1531165 1.800394787 -0.021505 181 89 SH20714 20714 YJL041W spliced 26.841103 82.425949 54.633526 1.73745923 -0.146419 181 90 SH20226 20226 YDR129C spliced 27.504906 79.478717 53.4918115 1.728287306 -0.063934 181 91 SH635 635 Gln2 5' flank 26.812472 78.716428 52.76445 1.722341416 -0.102326 181 92 SH13784 13784 MT COB intronic 27.963532 96.758576 27.963532 69.795044 48.879288 1.689124871 0.094746 181 93 SH1223 1223 Ile1 3' flank 26.001365 67.552963 46.777164 1.670033888 -0.01403 181 94 SH5365 5365 snR30 3' 26.35036 63.497348 44.923854 1.652477007 0.073283 181 95 SH9020 9020 snR17a / U3a U3a 386 407 30.904653 119.247771 75.076212 1.875502352 -0.576314 181 96 SH15205 15205 MT COX3 cox3 35.365332 125.510429 35.365332 91.145097 63.2552145 1.801096333 0.086116 181 97 SH1880 1880 Leu9 3' flank 3808.009374 2884.708104 3346.358739 3.524572497 0.016231 181 98 SH2873 2873 Pro7 3' flank 29.323992 100.203277 64.7636345 1.811331213 -0.268768 181 99 SH1999 1999 Lys3 5' flank 29.846079 79.815224 54.8306515 1.739023406 0.085753 181 100 SH2342 2342 Phe3 tRNA-exon/intron 36 53 30.012632 85.37127 57.691951 1.761115226 0.010111 181 101 SH17373 17373 YIL052C_9_257061_256224_INTRON_38_509 intron 29.679889 103.130367 29.679889 74.450478 52.0651835 1.716547403 0.144896 181 102 SH11169 11169 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2731 2746 963.902815 1062.95707 1013.429943 3.005793732 -0.213326 181 103 SH21586 21586 copy of SH6043 28.11417 76.995358 52.554764 1.72061209 0.00913 181 104 SH4810 4810 snR5 3' 27.527047 77.770433 52.64874 1.721387982 -0.040663 182 2 SH2068 2068 Lys4 tRNA 6 22 32.893298 85.866113 59.3797055 1.773638039 0.123837 182 3 SH21394 21394 Pro2_7 spliced 30.189456 73.81632 52.002888 1.716027463 0.185536 182 4 SH5552 5552 snR33 snR33 46 65 28.677778 76.552724 52.615251 1.721111647 0.052301 182 5 SH2123 2123 Met1 tRNA 1 15 58.800415 115.797299 87.298857 1.941008558 0.048592 182 6 SH16662 16662 YFR032C-A_6_223758_223245_INTRON_1_331 intron 46.837872 149.792181 46.837872 103.954309 75.3960905 1.877348827 0.053986 182 7 SH12136 12136 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7566 7579 38.46393 102.579586 70.521758 1.84832313 -0.085724 182 8 SH20004 20004 YBR078W spliced 29.193338 77.173219 53.1832785 1.725775106 0.077791 182 9 SH19054 19054 YOR234C_15_779404_778554_INTRON_20_546 intron 30.683729 126.695513 30.683729 97.011784 63.8477565 1.805145642 -0.161927 182 10 SH17864 17864 YLL050C_12_40413_39803_INTRON_15_193 intron 28.376157 111.74112 28.376157 84.364963 56.37056 1.751052349 -0.064911 182 11 SH17385 17385 YIL069C_9_232366_231550_INTRON_4_412 exon/intron 27.979977 112.467043 27.979977 85.487066 56.7335215 1.753839741 -0.104632 182 12 SH2439 2439 Phe5 5' flank 40.991807 101.159541 71.075674 1.851720987 -0.004601 182 13 SH615 615 Gln1 3' flank 27.842474 69.049504 48.445989 1.685257826 0.096696 182 14 SH354 354 Arg5 3' flank 298.261689 388.839612 343.5506505 2.535990775 -0.12558 182 15 SH4469 4469 U3b (snR17b) 5' 29.177758 92.01679 60.597274 1.782453088 -0.143611 182 16 SH18150 18150 YLR406C_12_931752_931062_INTRON_58_406 intron/exon 26.668759 103.63664 26.668759 77.967881 52.31832 1.71865379 -0.102886 182 17 SH17609 17609 YJL205C-A_10_50443_50139_INTRON_33_175 3' exon 28.030641 109.103508 28.030641 82.072867 55.051754 1.740771161 -0.060416 182 18 SH8844 8844 LSR1 / U2 RNA U2 861 877 37.747549 84.076043 60.911796 1.784701405 0.305772 182 19 SH3286 3286 Thr2 tRNA 31 43 35.269167 88.861024 62.0650955 1.792847428 0.135325 182 20 SH15765 15765 YCR031C_3_178212_177492_INTRON_8_314 3' exon 27.488763 99.214825 27.488763 72.726062 50.1074125 1.699901977 0.022294 182 21 SH1158 1158 His1 tRNA 11 28 28.167272 89.410865 58.7890685 1.769296579 -0.146342 182 22 SH13507 13507 MT COX1 intronic 28.159494 110.517926 28.159494 83.358432 55.758963 1.746314688 -0.067336 182 23 SH19002 19002 YOR122C_15_552886_552297_INTRON_14_222 intron 25.714945 99.534782 25.714945 74.819837 50.267391 1.701286345 -0.133403 182 24 SH19512 19512 ACT1 27.970287 71.596873 49.78358 1.697086124 0.070753 182 25 SH10173 10173 RUF6 RUF6 711 723 44.237237 108.138667 76.187952 1.8818863 -0.075019 182 26 SH20160 20160 YDL130W spliced 30.388834 90.638763 60.5137985 1.781854415 -0.065837 182 27 SH11226 11226 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3016 3034 27.431045 82.17935 54.8051975 1.738821747 -0.102456 182 28 SH17996 17996 YLR287C-A_12_713158_712537_INTRON_4_433 intron 48.370021 152.021326 48.370021 104.651305 76.510663 1.883721965 0.06844 182 29 SH19742 19742 Negative Control 33.565031 92.463478 63.0142545 1.799438803 0.012296 182 30 SH3465 3465 Trp1 3' flank 30.29829 90.006172 60.152231 1.77925174 -0.058996 182 31 SH20811 20811 YKL186C spliced 30.984577 90.727789 60.856183 1.784304709 -0.041371 182 32 SH20710 20710 YJL024C spliced 31.169931 82.046747 56.608339 1.752880412 0.122197 182 33 SH16259 16259 YDR424C_4_1319830_1319376_INTRON_26_121 exon/intron 26.638698 105.832103 26.638698 80.193405 53.4160515 1.727671782 -0.133189 182 34 SH4022 4022 SRP RNA SRP RNA 1 17 31.263728 82.151503 56.7076155 1.753641386 0.124245 182 35 SH19407 19407 YPR098C_16_729525_728944_INTRON_48_143 exon/intron 26.747138 106.068596 26.747138 80.321458 53.534298 1.728632112 -0.127132 182 36 SH11229 11229 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3031 3054 26.865433 83.010399 54.937916 1.739872181 -0.151786 182 37 SH332 332 Arg5 5' flank - tRNA10 5' flank 10 34.93127 90.356464 62.643867 1.796878559 0.093207 182 38 SH21692 21692 copy of SH10452 28.650867 80.780749 54.715808 1.738112817 -0.003292 182 39 SH19833 19833 Negative Control 31.148408 82.2292 56.688804 1.753497294 0.117837 182 40 SH5175 5175 snR13 snR13 31 47 38.440769 93.294456 65.8676125 1.818671922 0.109479 182 41 SH1595 1595 Leu4 3' flank 34.638417 86.68866 60.6635385 1.782927739 0.170161 182 42 SH13308 13308 MT COX1 COX1-ai5a 26.427289 101.647385 26.427289 76.220096 51.3236925 1.710317894 -0.098573 182 43 SH20881 20881 YLR211C spliced 26.345945 76.039586 51.1927655 1.709208591 -0.102235 182 44 SH16473 16473 YER102W_5_362729_363698_INTRON_1_360 intron 46.165798 144.567743 46.165798 99.401945 72.7838715 1.862035153 0.132425 182 45 SH3022 3022 Ser2 71-82 + 3' flank 71 28.133664 76.572072 52.352868 1.718940478 0.015955 182 46 SH3681 3681 Val2 3' flank 27.526979 72.692839 50.109909 1.699923614 0.025408 182 47 SH20932 20932 YLR388W spliced 33.561887 90.254129 61.908008 1.79174683 0.061327 182 48 SH20031 20031 YBR181C spliced 26.837132 73.539414 50.188273 1.700602252 -0.03458 182 49 SH6372 6372 snR43 snR43 101 116 31.393354 85.373393 58.3833735 1.766289186 0.070272 182 50 SH18662 18662 YNL112W_14_413636_416278_INTRON_1274_2275 intron 26.260057 102.068428 26.260057 76.808371 51.534214 1.712095657 -0.118176 182 51 SH20526 20526 YGR118W spliced 31.851782 92.46728 62.159531 1.793507729 -0.033805 182 52 SH18068 18068 YLR344W_12_819312_820142_INTRON_20_466 intron 35.407882 118.219304 35.407882 83.811422 59.609652 1.775316586 0.257482 182 53 SH17984 17984 YLR275W_12_694378_694800_INTRON_6_95 exon/intron 24.739342 94.750622 24.739342 71.01128 47.875311 1.680111608 -0.157756 182 54 SH16781 16781 YGL103W_7_310965_311925_INTRON_50_560 intron 26.947708 92.960489 26.947708 67.012781 46.9802445 1.671915273 0.062521 182 55 SH17053 17053 YGR214W_7_920570_921783_INTRON_91_545 intron 24.846573 106.544079 24.846573 82.697506 53.7720395 1.730556509 -0.295619 182 56 SH21748 21748 copy of SH12763 30.428657 88.885983 59.65732 1.77566374 -0.033876 182 57 SH5132 5132 snR11 3' 27.617925 73.113231 50.365578 1.702133822 0.026227 182 58 SH1349 1349 Ile3 126-133 + 3' flank 126 140 30.231301 82.801984 56.5166425 1.752176354 0.067099 182 59 SH11076 11076 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2266 2283 159.481528 198.952476 179.217002 2.253379208 0.199266 182 60 SH167 167 Arg2 5' flank 27.428875 88.156105 57.79249 1.761871407 -0.172895 182 61 SH1848 1848 Leu9 5' flank 29.176159 88.093511 58.634835 1.768155707 -0.076279 182 62 SH3388 3388 Thr4 tRNA 26 43 26.740932 71.419833 49.0803825 1.690907939 -0.013431 182 63 SH3493 3493 Tyr1 tRNA 6 20 37.459074 97.183719 67.3213965 1.828153116 0.003952 182 64 SH7985 7985 snoRNA cluster 2 snR57 26.981096 104.796865 26.981096 78.815769 52.8984325 1.723442803 -0.091776 182 65 SH21734 21734 copy of SH12339 27.168733 81.954972 54.5618525 1.736889107 -0.117823 182 66 SH10304 10304 RUF7 RUF7 131 147 27.595211 83.18844 55.3918255 1.743445678 -0.103432 182 67 SH10103 10103 RUF6 RUF6 361 378 28.445044 73.843429 51.1442365 1.7087967 0.073024 182 68 SH15302 15302 YAL001C_1_151163_147591_INTRON_71_160 5'exon 29.158411 103.479159 29.158411 75.320748 52.2395795 1.717999672 0.099861 182 69 SH12844 12844 MT COX1 COX1ai1 27.076944 108.98605 27.076944 82.909106 54.993025 1.74030761 -0.135788 182 70 SH8556 8556 snR19 / U1 RNA U1 276 292 31.734534 76.783469 54.2590015 1.734471797 0.240123 182 71 SH12647 12647 MT_15S MT_15S 27.022323 104.867627 27.022323 78.845304 52.9338135 1.723733183 -0.089274 182 72 SH17417 17417 YIL111W_9_155219_155762_INTRON_2_89 5' exon 28.870808 108.327513 28.870808 80.456705 54.6637565 1.737699473 0.015141 182 73 SH6030 6030 snR37 snR37 66 84 26.047543 71.670749 48.859146 1.688945872 -0.067392 182 74 SH20523 20523 YGR118W spliced 29.962421 91.8535 60.9079605 1.784674057 -0.105345 182 75 SH504 504 Asp2 3' flank 27.421824 79.31655 53.369187 1.727290587 -0.067589 182 76 SH17538 17538 YJL177W_10_90783_91654_INTRON_310_626 intron 29.266372 118.279678 29.266372 90.013306 59.639839 1.775536462 -0.105498 182 77 SH20262 20262 YDR397C spliced 31.242246 90.127057 60.6846515 1.783078862 -0.02001 182 78 SH13325 13325 MT COX1 COX1-ai5a 29.138941 112.744601 29.138941 84.60566 56.8723005 1.754900796 -0.017784 182 79 SH1381 1381 Leu1 5' flank 26.944818 90.868196 58.906507 1.770163271 -0.236781 182 80 SH20579 20579 YHR016C spliced 41.786641 89.084671 65.435656 1.815814461 0.273384 182 81 SH11846 11846 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6116 6133 81.121022 129.276198 105.19861 2.022010001 0.1691 182 82 SH14242 14242 MT tRNA Ser tRNA 31.70068 113.811621 31.70068 83.110941 57.4058105 1.758955853 0.12486 182 83 SH16093 16093 YDR025W_4_491510_492319_INTRON_46_384 3' exon 34.858028 131.6075 34.858028 97.749472 66.30375 1.821538092 -0.068289 182 84 SH15118 15118 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 3' 26.337482 94.517282 26.337482 69.1798 47.758641 1.67905196 -0.01213 182 85 SH3962 3962 RNase MRP RNaseMRP 226 240 30.723595 75.97828 53.3509375 1.727142055 0.189678 182 86 SH9314 9314 RUF1 RUF1 146 163 27.739954 74.681656 51.210805 1.709361603 0.01435 182 87 SH695 695 Gln3 tRNA 6 23 33.652 76.280554 54.966277 1.740096322 0.337475 182 88 SH19978 19978 YBL087C spliced 31.23389 87.092738 59.163314 1.772052493 0.032611 182 89 SH17220 17220 YHR041C_8_189855_189122_INTRON_15_115 intron 27.416127 97.425085 27.416127 71.008958 49.2125425 1.692075803 0.040127 182 90 SH21410 21410 Ser3 spliced 30.38154 92.530274 61.455907 1.788563633 -0.098109 182 91 SH12198 12198 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7876 7894 28.471641 88.493548 58.4825945 1.767026631 -0.116004 182 92 SH18850 18850 YNL312W_14_48286_49215_INTRON_8_115 3' exon 39.576394 144.2974 39.576394 105.721006 72.6487 1.861227847 -0.124484 182 93 SH14071 14071 MT COB Cytbi4 34.987098 256.456317 34.987098 222.469219 128.7281585 2.109673557 -1.704424 182 94 SH10843 10843 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1101 1123 96.062016 218.548414 157.305215 2.196743121 -0.564265 182 95 SH2579 2579 Pro2 3' flank 30.825283 140.4145 85.6198915 1.932574673 -0.914387 182 96 SH14131 14131 MT COB intronic 28.583879 141.91559 28.583879 114.331711 71.457795 1.854049611 -0.556099 182 97 SH9375 9375 RUF1 RUF1 451 467 32.402564 98.200961 65.3017625 1.814924903 -0.140081 182 98 SH11359 11359 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3681 3698 1324.469482 753.649461 1039.059472 3.016640406 0.744616 182 99 SH16807 16807 YGL137W_7_249872_252741_INTRON_19_218 intron 30.213528 106.94373 30.213528 77.730202 53.971865 1.732167425 0.135311 182 100 SH5751 5751 snR35 5' 28.041552 84.269721 56.1556365 1.749393354 -0.08613 182 101 SH6749 6749 snR50 5' 30.214177 85.498954 57.8565655 1.762352649 0.016757 182 102 SH7575 7575 snR189 5' 27.178771 69.914172 48.5464715 1.68615767 0.038291 182 103 SH12174 12174 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7756 7773 33.013048 87.698191 60.3556195 1.780717712 0.096041 182 104 SH21563 21563 copy of SH4993 36.6539 110.216497 73.4351985 1.865904273 -0.273495 183 2 SH10689 10689 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 331 349 28.574767 78.38862 53.4816935 1.728205151 0.021793 183 3 SH19022 19022 YOR182C_15_678792_678190_INTRON_4_414 intron 30.444694 114.66665 30.444694 85.221956 57.833325 1.762178162 0.03195 183 4 SH6097 6097 snR37 3' 27.627476 66.261336 46.944406 1.671583848 0.121318 183 5 SH7106 7106 snR63 snR63 36 54 28.24672 76.966068 52.606394 1.721038533 0.018373 183 6 SH13760 13760 MT COB intronic 27.152601 105.348257 27.152601 79.195656 53.1741285 1.725700381 -0.084652 183 7 SH14199 14199 MT COB Exon6 26.457008 84.699723 26.457008 59.242715 42.8498615 1.631949423 0.151314 183 8 SH15908 15908 YDL083C_4_307788_306925_INTRON_25_456 intron 25.77906 92.034484 25.77906 67.255424 46.517242 1.667613958 -0.02612 183 9 SH166 166 Arg2 5' flank 28.075802 64.470219 46.2730105 1.665327755 0.178614 183 10 SH10442 10442 RUF8 RUF8 136 152 27.665933 81.576324 54.6211285 1.737360669 -0.079016 183 11 SH2066 2066 Lys4 5' flank - tRNA12 12 27.055593 68.601384 47.8284885 1.679686656 0.047733 183 12 SH9935 9935 RUF5-1 RUF5-1 481 499 26.74244 69.003909 47.8731745 1.680092227 0.019699 183 13 SH4169 4169 SRP RNA 3' 74.635868 115.258738 94.947303 1.977482633 0.293161 183 14 SH13691 13691 MT ORF 5 (hypothetical) ORF5 / 3' 26.148406 82.607585 26.148406 57.459179 41.8037925 1.621215683 0.160447 183 15 SH9117 9117 snR14 / U4 RNA 3' 26.994708 67.468123 47.2314155 1.674230961 0.059378 183 16 SH9916 9916 RUF5-1 RUF5-1 386 405 29.247529 74.621132 51.9343305 1.715454537 0.114955 183 17 SH1122 1122 Gly4 3' flank 28.217169 73.688195 50.952682 1.707167049 0.059976 183 18 SH11909 11909 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6431 6448 2024.566456 1582.558037 1803.562247 3.256131136 0.140348 183 19 SH18304 18304 YML073C_13_124172_123227_INTRON_16_430 intron 47.186458 156.527845 47.186458 110.341387 78.7639225 1.896327336 -0.059167 183 20 SH7247 7247 snR65 snR65 11 33 26.485858 79.40452 52.945189 1.723826503 -0.134133 183 21 SH857 857 Glu2 tRNA 51 63 29.323965 83.153205 56.238585 1.750034385 0.01148 183 22 SH13312 13312 MT COX1 COX1-ai5a 29.320691 104.989027 29.320691 76.668336 52.9945135 1.72423091 0.092564 183 23 SH14236 14236 MT tRNA Ser 5' 46.822067 134.474551 46.822067 88.652484 67.7372755 1.830827725 0.377027 183 24 SH9244 9244 snR6 / U6 RNA U6 91 110 27.538519 84.354667 55.946593 1.747773644 -0.121246 183 25 SH18587 18587 YNL050C_14_534978_534075_INTRON_18_108 intron 26.006088 93.186515 26.006088 68.180427 47.0932575 1.672958732 -0.022552 183 26 SH3720 3720 Val3 3' flank 26.015409 75.604881 50.810145 1.705950434 -0.121047 183 27 SH17145 17145 YHR010W_8_126513_127484_INTRON_32_592 3' exon 29.668824 104.035748 29.668824 75.366924 52.517874 1.720307137 0.131945 183 28 SH2598 2598 Pro3 5' flank 28.990751 82.298966 55.6448585 1.745425042 0.000286 183 29 SH14300 14300 MT VAR1 includes 5’ processing site VAR1 26.04813 93.973168 26.04813 68.925038 47.486584 1.676570929 -0.029864 183 30 SH13329 13329 MT COX1 COX1-ai5a 25.870393 89.913444 25.870393 65.043051 45.456722 1.657598114 0.014481 183 31 SH20237 20237 YDR305C spliced 29.024854 88.225047 58.6249505 1.768082489 -0.085546 183 32 SH3916 3916 RNase MRP 5' - 12 12 31.874402 97.426191 64.6502965 1.810570521 -0.138043 183 33 SH14912 14912 MT tRNA Tyr 5' / tRNA 27.278973 107.306437 27.278973 81.027464 54.1532185 1.733624273 -0.098797 183 34 SH10805 10805 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 911 929 5494.801699 4356.948112 4925.874906 3.692483379 -0.159542 183 35 SH1865 1865 Leu9 tRNA 66 80 40.731157 104.777194 72.7541755 1.861857923 -0.081741 183 36 SH2040 2040 Lys3 3' flank 31.202219 90.008026 60.6051225 1.782509333 -0.019681 183 37 SH3711 3711 Val3 tRNA 36 48 107.244154 205.641669 156.4429115 2.19435589 -0.330151 183 38 SH21887 21887 copy of SH18602 25.992092 71.800065 48.8960785 1.68927403 -0.073226 183 39 SH8220 8220 snoRNA cluster 3; snR51 31.948405 112.573871 31.948405 81.625466 56.7869355 1.754248433 0.163178 183 40 SH5913 5913 snR36 snR36 21 40 37.412983 99.140501 68.276742 1.834272789 -0.038179 183 41 SH13717 13717 MT tRNAGlu (and 5' processing site for COB) 3' 26.090545 96.624603 26.090545 71.534058 48.8123015 1.688529285 -0.062383 183 42 SH18292 18292 YML073C_13_124172_123227_INTRON_16_430 exon/intron 28.896592 107.851179 28.896592 79.954587 54.4255895 1.735803142 0.023091 183 43 SH19816 19816 Negative Control 30.842526 77.525455 54.1839905 1.733870986 0.176774 183 44 SH4876 4876 snR8 snR8 161 175 37.053209 97.113519 67.083364 1.826614833 -0.003521 183 45 SH12333 12333 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.499697 116.762753 29.499697 88.263056 58.8813765 1.769977954 -0.064494 183 46 SH8050 8050 snoRNA cluster 2 intergenic 29.106399 121.354946 29.106399 93.248547 61.177473 1.786591534 -0.167459 183 47 SH3160 3160 Ser5 5' flank 29.519975 82.075833 55.797904 1.746617885 0.037089 183 48 SH20187 20187 YDL219W spliced 27.267047 74.459715 50.863381 1.706405225 -0.015908 183 49 SH16196 16196 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 29.430601 104.451308 29.430601 76.020707 52.725654 1.722021975 0.108107 183 50 SH6994 6994 snR60 snR60 51 72 28.845322 78.500044 53.672683 1.729753305 0.038127 183 51 SH335 335 Arg5 tRNA 11 25 80.239349 147.958109 114.098729 2.057280807 -0.087509 183 52 SH12394 12394 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 45.005955 158.228885 45.005955 114.22293 79.6144425 1.900991858 -0.170301 183 53 SH21682 21682 copy of SH10032 25.127899 73.694638 49.4112685 1.693826003 -0.163336 183 54 SH1277 1277 Ile2 tRNA-intron 81 97 29.112953 84.300098 56.7065255 1.753633038 -0.015842 183 55 SH21819 21819 copy of SH15999 43.962738 97.907366 70.935052 1.850860891 0.121245 183 56 SH11685 11685 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5311 5331 58.615795 104.557599 81.586697 1.911619351 0.243332 183 57 SH5335 5335 snR30 snR30 526 542 27.976503 73.327074 50.6517885 1.704594785 0.048267 183 58 SH11957 11957 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6671 6684 572.956191 592.574023 582.765107 2.765493541 0.031772 183 59 SH5347 5347 snR30 586-601+3' 586 31.431058 89.216812 60.323935 1.780489663 0.003758 183 60 SH2481 2481 Phe5 3' flank 35.771016 87.097766 61.434391 1.788411557 0.188101 183 61 SH1387 1387 Leu1 tRNA 6 18 29002.97616 32784.53041 30893.75329 4.489870674 -1.180484 183 62 SH20560 20560 YHR001W-A spliced 50.355719 112.203115 81.279417 1.90998058 -0.034443 183 63 SH16643 16643 YFR024C-A_6_203420_201947_INTRON_48_165 3' exon 31.853132 105.335286 31.853132 74.482154 53.167643 1.725647408 0.277618 183 64 SH3738 3738 Val4 5' flank 26.448922 80.351886 53.400404 1.727544543 -0.148637 183 65 SH18952 18952 YOL127W_15_80347_81189_INTRON_14_427 intron 26.79428 106.608712 26.79428 80.814432 53.804356 1.730817438 -0.12994 183 66 SH5399 5399 snR31 snR31 61 77 37.933874 93.18813 65.561002 1.816645582 0.10091 183 67 SH7753 7753 snoRNA cluster1 snR76 261.41249 663.723659 261.41249 403.311169 332.3618295 2.521611141 -0.352008 183 68 SH3402 3402 Thr4 3' flank 29.078182 68.556136 48.817159 1.688572501 0.187206 183 69 SH15204 15204 MT COX3 cox3 29.533488 118.046674 29.533488 89.513186 59.523337 1.774687271 -0.084718 183 70 SH16120 16120 YDR064W_4_579453_580447_INTRON_22_560 intron 31.820633 114.238913 31.820633 83.41828 57.6194565 1.760569157 0.124204 183 71 SH18677 18677 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.174506 104.185589 29.174506 76.011083 52.5927945 1.720926248 0.091767 183 72 SH11659 11659 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5181 5196 2188.471682 1765.86988 1977.170781 3.296044184 0.069762 183 73 SH7915 7915 snoRNA cluster1 intergenic/snR72 27.766345 104.261587 27.766345 77.495242 52.6307935 1.721239918 -0.020805 183 74 SH20015 20015 YBR084C-A spliced 29.37008 90.003259 59.6866695 1.775877346 -0.100591 183 75 SH10242 10242 RUF6 3' 27.000094 85.498139 56.2491165 1.750115705 -0.17193 183 76 SH1229 1229 Ile1 3' flank 26.961565 82.833394 54.8974795 1.739552405 -0.142919 183 77 SH5239 5239 snR30 snR30 46 60 28.984598 76.687537 52.8360675 1.722930486 0.070591 183 78 SH11807 11807 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5921 5938 3506.599474 2278.585429 2892.592452 3.461287249 0.28226 183 79 SH16985 16985 YGR118W_7_726968_727725_INTRON_66_385 exon/intron 25.894431 109.68325 25.894431 84.788819 55.341625 1.743051907 -0.242371 183 80 SH21847 21847 copy of SH17382 29.387893 97.009981 63.198937 1.800709774 -0.215753 183 81 SH5002 5002 snR10 snR10 41 55 32.113722 85.691574 58.902648 1.770134819 0.094882 183 82 SH6323 6323 snR42 3' 28.384178 72.064645 50.2244115 1.700914857 0.092792 183 83 SH8808 8808 LSR1 / U2 RNA U2 681 695 28.944896 82.108928 55.526912 1.744503522 -0.000382 183 84 SH6772 6772 snR50 snR50 36 55 26.823087 72.575602 49.6993445 1.696350661 -0.022928 183 85 SH20120 20120 YDL079C spliced 57.708647 111.16458 84.4366135 1.926530807 0.109875 183 86 SH1246 1246 Ile2 5' flank 34.767231 84.433441 59.600336 1.775248708 0.224023 183 87 SH15237 15237 MT COX3 3' 27.479078 101.337938 27.479078 74.85886 51.168969 1.709006666 -0.006121 183 88 SH8303 8303 snoRNA cluster4 intergenic 29.561751 116.35048 29.561751 87.788729 58.67524 1.768454875 -0.053345 183 89 SH17642 17642 YJR145C_10_702761_701720_INTRON_15_270 intron 39.07227 141.078129 39.07227 103.005859 71.0390645 1.851497234 -0.081367 183 90 SH14349 14349 MT ORF9 and ORF10 (hypothetical) 5' 28.760298 93.564684 28.760298 65.804386 47.282342 1.67469898 0.205348 183 91 SH14476 14476 MT 21S rRNA 21S rRNA3 26.822039 99.118616 26.822039 73.296577 50.059308 1.699484842 -0.032489 183 92 SH6208 6208 snR40 3' 28.819441 72.049482 50.4344615 1.702727388 0.122286 183 93 SH8358 8358 snoRNA cluster4 3' 35.378251 215.415407 35.378251 181.037156 108.2077035 2.03425818 -1.298839 183 94 SH15116 15116 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " orf 3 / 3' 28.620957 145.031143 28.620957 117.410186 73.0155715 1.863415489 -0.608945 183 95 SH12206 12206 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7916 7936 30.961201 87.123718 59.0424595 1.77116444 0.020324 183 96 SH13909 13909 MT COB Cytbi3 28.763967 120.232071 28.763967 92.468104 60.6160355 1.782587529 -0.170297 183 97 SH8825 8825 LSR1 / U2 RNA U2 766 787 29.107025 60.265817 44.686421 1.650175573 0.312794 183 98 SH14614 14614 MT 21S rRNA Sce1 endonuc 29.744018 92.798912 29.744018 64.054894 46.899456 1.671167805 0.295974 183 99 SH11227 11227 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3021 3041 27.929094 72.655078 50.292086 1.70149965 0.053836 183 100 SH16488 16488 YER102W_5_362729_363698_INTRON_1_360 intron/exon 30.53231 113.324798 30.53231 83.792488 57.162399 1.757110447 0.061964 183 101 SH2206 2206 Phe1 5' flank 30.384233 84.873629 57.628931 1.760640564 0.035625 183 102 SH20255 20255 YDR381W spliced 27.418226 79.399466 53.408846 1.727613194 -0.068882 183 103 SH16505 16505 YER117W_5_396765_397649_INTRON_43_513 intron 28.682487 112.158584 28.682487 84.476097 56.579292 1.752657509 -0.045998 183 104 SH16490 16490 YER102W_5_362729_363698_INTRON_1_360 3' exon 36.791384 135.955056 36.791384 100.163672 68.477528 1.835548074 -0.073142 184 2 SH13630 13630 MT ATP6 ATP6 26.481374 101.170802 26.481374 75.689428 51.085401 1.708296807 -0.087931 184 3 SH10271 10271 RUF7 5' 28.274604 99.415621 63.8451125 1.805127657 -0.305335 184 4 SH9103 9103 snR14 / U4 RNA U4 131 148 32.045696 79.636513 55.8411045 1.746954 0.205409 184 5 SH5687 5687 snR34 snR34 356 372 40.425556 101.618093 71.0218245 1.851391825 -0.025374 184 6 SH13024 13024 MT COX1 COX1ai2 25.239787 102.371797 25.239787 78.13201 51.6858985 1.71337207 -0.210886 184 7 SH16851 16851 YGL183C_7_157071_156547_INTRON_4_86 intron 29.75636 114.808828 29.75636 86.052468 57.904414 1.762711671 -0.013661 184 8 SH6499 6499 snR46 5' - 3 -14 3 34.303581 93.496552 63.9000665 1.80550131 0.008337 184 9 SH11241 11241 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3091 3108 35150.07379 18630.51534 26890.29457 4.42959556 -0.037178 184 10 SH16677 16677 YGL030W_7_439087_439634_INTRON_4_233 5' exon 33.310504 118.621336 33.310504 86.310832 59.810668 1.776778653 0.132715 184 11 SH2353 2353 Phe3 91 + 3' flank 91 44.3207 80.075717 62.1982085 1.793777876 0.541731 184 12 SH15852 15852 YDL075W_4_322225_322987_INTRON_58_478 3' exon 32.235429 112.405078 32.235429 81.169649 56.702539 1.753602506 0.183811 184 13 SH10292 10292 RUF7 RUF7 71 86 39.381132 90.741044 65.061088 1.813321322 0.186604 184 14 SH15589 15589 YBR084C-A_2_415219_414144_INTRON_3_508 intron/exon 53.625954 163.656817 53.625954 111.030863 82.3284085 1.91554972 0.042678 184 15 SH17721 17721 YKL156W_11_158616_159214_INTRON_4_353 5' exon 30.756456 112.473436 30.756456 82.71698 56.736718 1.75386421 0.091739 184 16 SH9130 9130 snR7 U5 RNA 5' 26.424305 73.934792 50.1795485 1.700526749 -0.069579 184 17 SH5623 5623 snR34 snR34 36 53 25.876295 75.511985 50.69414 1.70495776 -0.130193 184 18 SH16116 16116 YDR064W_4_579453_580447_INTRON_22_560 intron 28.097618 102.320961 28.097618 75.223343 51.6604805 1.713158441 0.031332 184 19 SH15282 15282 MT 9S rRNA 9S 31.584377 128.126179 31.584377 97.541802 64.5630895 1.809984304 -0.148264 184 20 SH11660 11660 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5186 5199 41.408519 95.709579 68.559049 1.836064785 0.11795 184 21 SH11844 11844 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6106 6124 170.012358 201.059324 185.535841 2.268427817 0.25833 184 22 SH13014 13014 MT COX1 COX1ai2 24.528681 106.239923 24.528681 82.711242 53.6199615 1.729326498 -0.320577 184 23 SH2911 2911 Pro8 tRNA 76 88 46.4478 103.699986 75.073893 1.875488937 0.051786 184 24 SH9043 9043 snR17a / U3a 3' 25.465968 70.562075 48.0140215 1.681368083 -0.095918 184 25 SH3342 3342 Thr3 tRNA 56 71 787.457266 1489.301793 1138.37953 3.056287078 -1.008742 184 26 SH7458 7458 snR71 5' 30.899395 92.653386 61.7763905 1.79082253 -0.077545 184 27 SH9992 9992 RUF5-1 766-775 + 3' 766 30.154551 86.334764 58.2446575 1.765256096 -0.000936 184 28 SH20770 20770 YKL002W spliced 35.997805 94.474513 65.236159 1.814488383 0.028412 184 29 SH19450 19450 CYC1 31.497011 91.527046 61.5120285 1.788960049 -0.032985 184 30 SH10142 10142 RUF6 RUF6 556 573 204.113893 230.922643 217.518268 2.337495737 0.250309 184 31 SH970 970 Gly1 3' flank 26.635172 72.804444 49.719808 1.696529443 -0.039488 184 32 SH14135 14135 MT COB intronic 27.432919 95.390978 27.432919 68.958059 48.195489 1.683006391 0.069429 184 33 SH16470 16470 YER102W_5_362729_363698_INTRON_1_360 exon/intron 29.94368 114.773542 29.94368 85.829862 57.886771 1.762579325 -0.001255 184 34 SH266 266 Arg4 5' flank 29.570558 79.009755 54.2901565 1.734721094 0.078434 184 35 SH13306 13306 MT COX1 COX1-ai5a 26.883018 106.772058 26.883018 80.88904 53.886029 1.73147618 -0.124635 184 36 SH21043 21043 YMR133W spliced 29.051898 85.407676 57.229787 1.75762213 -0.034093 184 37 SH2673 2673 Pro4 tRNA-exon/intron 31 45 33.55118 83.539985 58.5455825 1.767494131 0.192828 184 38 SH20571 20571 YHR010W spliced 53.194228 115.52725 84.360739 1.926140376 -0.041964 184 39 SH21912 21912 copy of SH19565 34.79127 84.514546 59.652908 1.77563162 0.223463 184 40 SH9787 9787 RUF4 RUF4 711 733 30.454411 95.441552 62.9479815 1.798981809 -0.142825 184 41 SH5201 5201 snR13 3' 28.969663 81.995015 55.482339 1.744154762 0.002619 184 42 SH3625 3625 Val1 3' flank 27.162543 86.335694 56.7491185 1.75395912 -0.170388 184 43 SH18198 18198 YML024W_13_225889_226697_INTRON_4_401 intron 31.443516 116.418109 31.443516 85.974593 58.7090545 1.768705086 0.061553 184 44 SH8832 8832 LSR1 / U2 RNA U2 801 817 53.434942 112.362428 82.898685 1.918547642 0.016111 184 45 SH1066 1066 Gly3 66-71 + 3' flank 66 26.557131 65.250394 45.9037625 1.661848284 0.060218 184 46 SH17867 17867 YLL050C_12_40413_39803_INTRON_15_193 intron 29.393952 100.420704 29.393952 72.026752 50.710352 1.705096625 0.159793 184 47 SH3347 3347 Thr3 3' flank 27.410518 76.025779 51.7181485 1.713642969 -0.02594 184 48 SH18939 18939 YOL121C_15_92849_92025_INTRON_21_410 3' exon 34.449812 121.480534 34.449812 88.030722 61.240267 1.787037076 0.134297 184 49 SH21471 21471 copy of SH1241 31.901488 86.47822 59.189854 1.772247269 0.071871 184 50 SH21704 21704 copy of SH11079 26.858212 82.487381 54.6727965 1.737771289 -0.145965 184 51 SH20511 20511 YGR029W spliced 33.128227 81.909457 57.518842 1.759810134 0.20634 184 52 SH3978 3978 RNase MRP RNaseMRP 306 323 26.04914 71.380768 48.714954 1.687662297 -0.063383 184 53 SH401 401 Asn1 3' flank 28.043224 74.679724 51.361474 1.710637479 0.034943 184 54 SH17897 17897 YLR061W_12_263195_263949_INTRON_13_401 5' exon 29.540325 117.203119 29.540325 88.662794 59.1015595 1.771598941 -0.069642 184 55 SH3277 3277 Thr2 5' flank - tRNA4 4 44.086806 105.821345 74.9540755 1.874795252 -0.034001 184 56 SH3259 3259 Thr1 3' flank 27.09452 72.428243 49.7613815 1.696892429 -0.001588 184 57 SH16389 16389 YER044C-A_5_239773_238459_INTRON_64_151 5' exon 31.561556 117.932534 31.561556 87.370978 59.466267 1.774270676 0.041644 184 58 SH4006 4006 SRP RNA 5' 26.518424 77.530351 52.0243875 1.716206976 -0.108299 184 59 SH19079 19079 YOR293W_15_867094_867848_INTRON_53_489 intron 26.178286 103.680773 26.178286 78.502487 52.3403865 1.718836925 -0.145117 184 60 SH12124 12124 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7506 7524 27.323875 80.989129 54.156502 1.733650605 -0.095224 184 61 SH2894 2894 Pro8 5' flank - tRNA7 7 36.601482 100.826048 68.713765 1.837043745 -0.090995 184 62 SH13954 13954 MT COB Cytbi3 24.400328 87.820641 24.400328 64.420313 44.4103205 1.647483907 -0.085093 184 63 SH119 119 Arg1 5' flank 40.116077 99.449516 69.7827965 1.84374837 0.012797 184 64 SH13972 13972 MT COB Cytbi3 26.457715 102.303073 26.457715 76.845358 51.6515365 1.713083245 -0.104197 184 65 SH15853 15853 YDL075W_4_322225_322987_INTRON_58_478 3' exon 31.06824 112.391313 31.06824 82.323073 56.6956565 1.753549789 0.112622 184 66 SH17031 17031 YGR183C_7_859471_859058_INTRON_4_216 intron 46.788615 147.354774 46.788615 101.566159 74.177387 1.870271531 0.100224 184 67 SH11008 11008 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1926 1939 2407.766148 1629.72326 2018.744704 3.3050814 0.321255 184 68 SH16219 16219 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 28.901501 120.899372 28.901501 92.997871 60.949686 1.784971473 -0.17275 184 69 SH8379 8379 snoRNA cluster 5 5' 29.462135 108.853416 29.462135 80.391281 54.926708 1.739783571 0.054157 184 70 SH20026 20026 YBR119W spliced 31.753158 95.282332 63.517745 1.802895071 -0.096117 184 71 SH744 744 Gln4 5' flank - tRNA12 12 26.622809 78.458943 52.540876 1.720497309 -0.112421 184 72 SH20524 20524 YGR118W spliced 39.097317 102.534803 70.81606 1.85013176 -0.071385 184 73 SH4308 4308 telomerase RNA telomerase 576 592 29.096256 87.964877 58.5305665 1.767382728 -0.077689 184 74 SH8391 8391 snoRNA cluster 5 snR190 37.080803 109.016447 37.080803 72.935644 55.0082235 1.74042762 0.536704 184 75 SH6102 6102 snR37 3' 43.601054 104.429584 74.015319 1.869321615 -0.016644 184 76 SH19521 19521 ACT1 28.84555 93.310451 61.0780005 1.785884811 -0.180535 184 77 SH6699 6699 snR49 snR49 21 36 31.018373 77.061089 54.039731 1.732713179 0.193501 184 78 SH19384 19384 YPR043W_16_654161_654842_INTRON_3_405 intron 37.452109 125.29757 37.452109 88.845461 63.148785 1.800364999 0.18701 184 79 SH17426 17426 YIL133C_9_99416_98527_INTRON_32_321 5' exon 35.818137 125.378231 35.818137 90.560094 63.1891155 1.800642276 0.110066 184 80 SH19165 19165 YPL075W_16_412249_415357_INTRON_9_759 3' exon 27.929556 98.731332 27.929556 71.801776 49.865666 1.697801624 0.065204 184 81 SH21249 21249 YPL031C spliced 28.669538 84.473272 56.571405 1.752596965 -0.046815 184 82 SH13331 13331 MT COX1 COX1-ai5a 26.87889 110.560352 26.87889 84.681462 55.780176 1.74647988 -0.170798 184 83 SH4888 4888 snR8 3' 29.31946 73.006 51.16273 1.70895371 0.141491 184 84 SH20433 20433 YGL076C spliced 29.164385 92.632953 60.898669 1.784607801 -0.154549 184 85 SH10094 10094 RUF6 RUF6 316 335 29.868119 73.584502 51.7263105 1.713711502 0.168522 184 86 SH2615 2615 Pro3 tRNA-exon/intron 26 38 28.215101 74.781188 51.4981445 1.711791582 0.045096 184 87 SH5694 5694 snR34 snR34 391 410 27.826254 82.412304 55.119279 1.741303528 -0.078337 184 88 SH7421 7421 snR69 snR69 6 20 36.676734 97.934066 67.3054 1.82804991 -0.029278 184 89 SH6872 6872 snR56 5' - 11 -9 11 26.183916 72.180374 49.182145 1.691807466 -0.064134 184 90 SH13965 13965 MT COB Cytbi3 26.934991 112.917162 26.934991 86.982171 56.958581 1.755559161 -0.193708 184 91 SH10447 10447 RUF8 RUF8 161 178 29.515074 92.643489 61.0792815 1.78589392 -0.138727 184 92 SH19652 19652 SIR1 2.2 26.902521 74.487437 50.694979 1.704964947 -0.042184 184 93 SH9217 9217 snR6 / U6 RNA 5' 26.56119 68.106934 47.334062 1.675173775 0.019157 184 94 SH6025 6025 snR37 snR37 41 60 26.495937 57.90112 42.1985285 1.625297307 0.17734 184 95 SH15712 15712 YBR220C_2_663261_662457_INTRON_302_722 intron 31.043158 139.539136 31.043158 109.495978 70.269568 1.846767284 -0.397796 184 96 SH451 451 Asp1 3' flank 31.103431 82.601061 56.852246 1.754747627 0.108923 184 97 SH6584 6584 snR47 snR47 26 40 33.69958 96.20676 64.95317 1.812600351 -0.064873 184 98 SH20267 20267 YDR424C spliced 27.289481 87.08601 57.1877455 1.757302976 -0.170267 184 99 SH19403 19403 YPR063C_16_678315_677807_INTRON_42_127 3' exon 32.427555 119.88093 32.427555 88.453375 60.440465 1.781327797 0.058827 184 100 SH12770 12770 MT COX1 COX1ai1 27.921035 105.160086 27.921035 78.239051 53.080043 1.724931266 -0.019902 184 101 SH8595 8595 snR19 / U1 RNA U1 471 488 30.201182 78.154225 54.1777035 1.733820592 0.129094 184 102 SH19086 19086 YOR293W_15_867094_867848_INTRON_53_489 intron/exon 29.691941 111.78955 29.691941 83.097609 56.394775 1.751238868 0.035646 184 103 SH7558 7558 snR79 3' 28.813446 72.012131 50.4127885 1.70254072 0.122399 184 104 SH13409 13409 MT COX1 intronic 27.824006 94.152755 27.824006 67.328749 47.5763775 1.677391371 0.119634 185 2 SH13124 13124 MT COX1 COX1ai3 28.832215 105.695376 28.832215 77.863161 53.347688 1.727115603 0.045427 185 3 SH10184 10184 RUF6 RUF6 766 780 32.935908 91.020417 61.9781625 1.792238696 0.028066 185 4 SH18051 18051 YLR333C_12_796335_795573_INTRON_1_423 intron 30.200728 111.449789 30.200728 82.249061 56.2248945 1.749928649 0.07611 185 5 SH9988 9988 RUF5-1 RUF5-1 746 763 32.128104 85.630813 58.8794585 1.769963807 0.096579 185 6 SH19075 19075 YOR293W_15_867094_867848_INTRON_53_489 intron 31.973961 122.702859 31.973961 91.728898 61.8514295 1.791349741 -0.016278 185 7 SH8514 8514 snR19 / U1 RNA U1 66 88 27.440194 66.489296 46.964745 1.671771969 0.104924 185 8 SH17142 17142 YHR010W_8_126513_127484_INTRON_32_592 intron 29.434232 116.389849 29.434232 87.955617 58.6949245 1.768600548 -0.062069 185 9 SH11417 11417 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3971 3986 64.666509 116.699569 90.683039 1.957526066 0.126488 185 10 SH8504 8504 snR19 / U1 RNA U1 16 35 28.970262 98.924688 63.947475 1.805823401 -0.265145 185 11 SH2037 2037 Lys3 3' flank 28.409167 92.773344 60.5912555 1.782409952 -0.192007 185 12 SH19690 19690 Negative Control 28.069732 85.963817 57.0167745 1.756002645 -0.104166 185 13 SH14666 14666 MT 21S rRNA 21S rRNA4 26.231543 106.432975 26.231543 81.201432 53.7164875 1.730107607 -0.174717 185 14 SH7890 7890 snoRNA cluster1 intergenic 30.170903 162.68022 30.170903 133.509317 81.84011 1.912966204 -0.829095 185 15 SH13737 13737 MT COB Exon1 29.849318 138.403405 29.849318 109.554087 69.7017025 1.843243386 -0.432392 185 16 SH15333 15333 YAL030W_1_87288_87754_INTRON_103_215 5' exon 36.817711 185.051481 36.817711 149.23377 93.0257405 1.968603136 -0.88231 185 17 SH6867 6867 snR56 5' 32.152496 165.109204 98.63085 1.994012776 -1.204723 185 18 SH9099 9099 snR14 / U4 RNA U4 111 128 31.800334 72.095588 51.947961 1.715568506 0.307098 185 19 SH13447 13447 MT COX1 intronic 25.069342 93.561959 25.069342 69.492617 47.2809795 1.674686465 -0.111493 185 20 SH10086 10086 RUF6 RUF6 276 294 25.014692 82.846478 53.930585 1.731835131 -0.28436 185 21 SH17011 17011 YGR148C_7_788173_787307_INTRON_1_392 intron 27.156079 104.265949 27.156079 78.10987 52.6329745 1.721257914 -0.070588 185 22 SH5679 5679 snR34 snR34 316 332 48.873885 118.05276 83.4633225 1.921495669 -0.162368 185 23 SH9392 9392 RUF1 536-550 + 3' 536 33.926872 98.167768 66.04732 1.8198552 -0.100103 185 24 SH18071 18071 YLR344W_12_819312_820142_INTRON_20_466 intron 25.963683 102.726252 25.963683 77.762569 51.863126 1.71485869 -0.151882 185 25 SH20256 20256 YDR381W spliced 26.687827 79.021833 52.85483 1.72308468 -0.114983 185 26 SH13062 13062 MT COX1 intronic 31.29093 121.293399 31.29093 91.002469 61.1466995 1.78637302 -0.032879 185 27 SH4100 4100 SRP RNA SRP RNA 391 405 28.499376 72.857548 50.678462 1.704823426 0.090077 185 28 SH20969 20969 YML026C spliced 27.94129 73.894906 50.918098 1.706872173 0.03844 185 29 SH2855 2855 Pro7 tRNA 81 95 31.883483 83.943336 57.9134095 1.762779134 0.117139 185 30 SH2837 2837 Pro7 5' flank - tRNA7 7 50.231476 107.715395 78.9734355 1.897481031 0.044672 185 31 SH17970 17970 YLR185W_12_522665_523290_INTRON_8_366 intron 28.547193 104.334099 28.547193 76.786906 52.6670495 1.721538989 0.040644 185 32 SH20331 20331 YER074W spliced 29.570882 85.526908 57.548895 1.760036989 -0.012553 185 33 SH1276 1276 Ile2 tRNA-intron 76 93 27.505903 70.038974 48.7724385 1.68817447 0.059621 185 34 SH5550 5550 snR33 snR33 36 60 29.466157 76.759193 53.112675 1.725198175 0.100703 185 35 SH3101 3101 Ser4 5' flank 29.146191 78.235678 53.6909345 1.729900963 0.061055 185 36 SH3574 3574 Tyr2 3' flank 26.927042 75.590773 51.2589075 1.709769346 -0.054539 185 37 SH19214 19214 YPL081W_16_404945_406039_INTRON_8_508 intron 29.364742 118.19895 29.364742 89.834208 59.599475 1.775242434 -0.097926 185 38 SH1155 1155 His1 5' flank - tRNA12 12 29.198446 83.783126 56.490786 1.751977617 -0.004158 185 39 SH14154 14154 MT COB intronic 27.841756 96.438313 27.841756 69.596557 48.7191565 1.687699761 0.089074 185 40 SH437 437 Asp1 tRNA 6 23 31.388005 87.653743 59.520874 1.7746693 0.029266 185 41 SH7665 7665 snoRNA cluster1 snR78 27.281432 96.368633 27.281432 70.087201 48.6843165 1.687389077 0.04318 185 42 SH5079 5079 snR11 5' - 15 -4 15 27.611634 78.222488 52.917061 1.723595716 -0.040685 185 43 SH2487 2487 Pro1 5' flank 29.641388 83.960043 56.8007155 1.754353806 0.019238 185 44 SH5080 5080 snR11 snR11 1 22 29.03258 68.406383 48.7194815 1.687702658 0.186282 185 45 SH9171 9171 snR7 U5 RNA U5 126 143 35.804638 91.368305 63.5864715 1.803364726 0.091701 185 46 SH16699 16699 YGL031C_7_438393_437938_INTRON_1_456 intron 29.272286 106.872543 29.272286 78.600257 53.9362715 1.731880921 0.064535 185 47 SH14865 14865 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 / 3' 27.298551 100.035719 27.298551 73.737168 50.5178595 1.703444941 -0.004327 185 48 SH18739 18739 YNL162W_14_331319_332151_INTRON_5_516 intron 27.389588 104.644365 27.389588 78.254777 52.8221825 1.722816341 -0.056312 185 49 SH5415 5415 snR31 snR31 141 157 90.13338 113.8995 102.01644 2.008670164 0.511694 185 50 SH9331 9331 RUF1 RUF1 231 247 29.47917 73.574088 51.526629 1.712031731 0.143967 185 51 SH13924 13924 MT COB Cytbi3 29.275814 114.938446 29.275814 86.662632 57.969223 1.763197479 -0.046382 185 52 SH7972 7972 snoRNA cluster 2 5'/snR57 33.747146 121.509992 33.747146 88.762846 61.254996 1.787141516 0.099865 185 53 SH14033 14033 MT COB Cytbi4 26.568446 93.60911 26.568446 68.040664 47.304555 1.674902961 0.020617 185 54 SH20247 20247 YDR381C-A spliced 27.940726 76.714243 52.3274845 1.718729858 0.001132 185 55 SH4725 4725 snR4 snR4 161 180 24.973177 74.311851 49.642514 1.695853767 -0.183234 185 56 SH20790 20790 YKL081W spliced 27.192212 82.943097 55.0676545 1.740896579 -0.128194 185 57 SH20292 20292 YDR500C spliced 74.809032 125.377418 100.093225 2.000404682 0.140209 185 58 SH11864 11864 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6206 6221 28.862258 73.304202 51.08323 1.70827835 0.107797 185 59 SH11540 11540 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4586 4599 9200.869747 8248.583576 8724.726662 3.94075183 -0.49862 185 60 SH19656 19656 SIR1 2.2 30.235541 75.153079 52.69431 1.721763722 0.170441 185 61 SH15210 15210 MT COX3 cox3 29.156608 109.52398 29.156608 81.367372 55.26199 1.74242652 0.022433 185 62 SH1184 1184 His1 3' flank 30.516345 88.942962 59.7296535 1.776189995 -0.031016 185 63 SH2531 2531 Pro1 3' flank 32.789746 85.940906 59.365326 1.773532857 0.11827 185 64 SH13640 13640 MT ATP6 ATP6 27.143823 96.494293 27.143823 70.35047 48.7471465 1.687949199 0.029844 185 65 SH15472 15472 YBL091C-A_2_46858_46559_INTRON_35_122 5' exon 27.502881 115.725985 27.502881 89.223104 58.3629925 1.766137552 -0.179864 185 66 SH10673 10673 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 251 269 26.43246 74.011086 50.221773 1.700892041 -0.069975 185 67 SH17966 17966 YLR185W_12_522665_523290_INTRON_8_366 intron 27.992419 98.801543 27.992419 71.809124 49.9007715 1.69810726 0.069436 185 68 SH7011 7011 snR60 3' 28.763284 81.43064 55.096962 1.741127653 -0.003936 185 69 SH13902 13902 MT COB Exon3 29.232521 101.885596 29.232521 73.653075 51.442798 1.711324582 0.127061 185 70 SH5313 5313 snR30 snR30 416 433 29.27076 73.082148 51.176454 1.70907019 0.137315 185 71 SH7825 7825 snoRNA cluster1 intergenic 26.405202 104.619597 26.405202 79.214395 52.8097985 1.72271451 -0.137479 185 72 SH5381 5381 snR31 5' 29.622442 70.640014 50.131228 1.700108343 0.193847 185 73 SH9247 9247 snR6 / U6 RNA 106-112 + 3' 106 26.484496 69.763066 48.123781 1.682359742 -0.009466 185 74 SH11061 11061 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2191 2209 28.292096 77.764528 53.028312 1.724507803 0.011064 185 75 SH11239 11239 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3081 3097 2199.328782 3072.22431 2635.776546 3.420908589 -0.798498 185 76 SH18907 18907 YOL120C_15_94401_93394_INTRON_113_559 intron 26.854498 95.475847 26.854498 69.621349 48.2379235 1.683388604 0.019203 185 77 SH19595 19595 AEP2/ATP13 2.1 27.009994 85.655653 56.3328235 1.750761519 -0.173082 185 78 SH17522 17522 YJL136C_10_156971_156248_INTRON_25_484 intron 33.515788 120.318255 33.515788 87.802467 60.6591275 1.782896159 0.114431 185 79 SH777 777 Glu1 5' flank 29.724628 87.340889 58.5327585 1.767398992 -0.038079 185 80 SH2992 2992 Ser2 5' flank 26.214955 67.907431 47.061193 1.672662932 -0.003297 185 81 SH15284 15284 MT 9S rRNA 9S 31.437765 116.661988 31.437765 86.224223 58.830994 1.769606186 0.056823 185 82 SH362 362 Arg5 3' flank 29.337963 80.145838 54.7419005 1.738319871 0.049261 185 83 SH17343 17343 YIL018W_9_316766_317930_INTRON_5_404 intron 29.110059 115.275643 29.110059 87.165584 58.1378215 1.764458754 -0.062934 185 84 SH12097 12097 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7371 7391 28.786984 70.932015 49.8594995 1.697747915 0.135131 185 85 SH10766 10766 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 716 734 33.022487 85.97616 59.4993235 1.774512028 0.127102 185 86 SH2413 2413 Phe4 3' flank 28.27104 74.439362 51.355201 1.710584433 0.053415 185 87 SH10361 10361 RUF7 RUF7 416 432 32.48199 90.651898 61.566944 1.789347597 0.023091 185 88 SH3368 3368 Thr4 5' flank 28.114569 68.184321 48.149445 1.682591286 0.127524 185 89 SH21778 21778 copy of SH14042 28.67645 80.89861 54.78753 1.738681721 -0.00307 185 90 SH19030 19030 YOR182C_15_678792_678190_INTRON_4_414 3' exon 31.643562 137.224005 31.643562 106.580443 69.1120025 1.839553477 -0.326619 185 91 SH9837 9837 RUF5-1 5' - 13 -9 13 28.161829 70.547252 49.3545405 1.693327113 0.098068 185 92 SH1873 1873 Leu9 3' flank 28.759666 75.182654 51.97116 1.71576241 0.075755 185 93 SH590 590 Gln1 5' flank - tRNA8 5' flank 8 30.555169 96.001284 63.2782265 1.801254299 -0.14745 185 94 SH3450 3450 Trp1 tRNA 81 97 30.582039 98.202384 64.3922115 1.808833341 -0.189535 185 95 SH13067 13067 MT COX1 intronic 28.561459 103.829723 28.561459 76.268264 52.4148615 1.719454443 0.04837 185 96 SH1440 1440 Leu2 5' flank 28.697589 92.307681 60.502635 1.781774289 -0.170703 185 97 SH2712 2712 Pro5 5' flank 31.147212 84.174395 57.6608035 1.76088069 0.081617 185 98 SH6672 6672 snR48 3' 26.911737 82.80729 54.8595135 1.739251952 -0.146089 185 99 SH18999 18999 YOR122C_15_552886_552297_INTRON_14_222 intron 29.506549 110.621217 29.506549 82.114668 55.8106085 1.746716758 0.035759 185 100 SH7650 7650 snoRNA cluster1 5' 27.390555 96.865614 27.390555 70.475059 48.932807 1.68960013 0.045572 185 101 SH19457 19457 CYC1 29.707306 80.812955 55.2601305 1.742411906 0.064534 185 102 SH18002 18002 YLR287C-A_12_713158_712537_INTRON_4_433 intron 27.020571 99.53008 27.020571 73.509509 50.26504 1.701266032 -0.021071 185 103 SH11990 11990 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S/3'ETS 6836 6858 30.912265 75.234718 53.0734915 1.724877659 0.21106 185 104 SH14792 14792 "MT tRNAs (Lys, Arg1, Gly)" 5' 32.491227 123.902686 32.491227 92.411459 62.451343 1.795541782 -0.014352 186 2 SH919 919 Glu3 3' flank 28.795163 83.980615 56.387889 1.751185836 -0.032721 186 3 SH1658 1658 Leu5 3' flank 31.057682 86.065602 58.561642 1.767613245 0.043392 186 4 SH19247 19247 YPL129W_16_305297_306136_INTRON_10_114 5' exon 28.774663 108.942139 28.774663 81.167476 54.9710695 1.740134187 0.00005 186 5 SH1600 1600 Leu4 3' flank 28.619951 87.01076 57.8153555 1.7620432 -0.082909 186 6 SH10235 10235 RUF6 RUF6 1021 1038 28.150665 69.64759 48.8991275 1.68930111 0.10962 186 7 SH15923 15923 YDL108W_4_267697_268698_INTRON_29_109 5' exon 38.602636 136.313403 38.602636 98.710767 68.6567015 1.836682935 -0.003465 186 8 SH19135 19135 YPL075W_16_412249_415357_INTRON_9_759 intron 33.860443 114.35384 33.860443 81.493397 57.67692 1.761002061 0.243478 186 9 SH7296 7296 snR66 5' 158.395994 207.696587 183.0462905 2.262560932 0.11862 186 10 SH5058 5058 snR10 3' 27.559528 74.966582 51.263055 1.709804484 -0.001871 186 11 SH21222 21222 YOR182C spliced 27.127984 74.475155 50.8015695 1.70587713 -0.025954 186 12 SH7450 7450 snR69 3' 43.754656 88.241624 65.99814 1.819531696 0.330861 186 13 SH331 331 Arg5 5' flank - tRNA7 5' flank 7 26.419399 77.302057 51.860728 1.714838609 -0.112674 186 14 SH650 650 Gln2 tRNA 36 48 37.581918 81.379767 59.4808425 1.774377111 0.368203 186 15 SH8638 8638 snR19 / U1 RNA 3' 27.362569 62.028035 44.695302 1.650261876 0.167531 186 16 SH5134 5134 snR11 3' 27.60882 84.76361 56.186215 1.749629777 -0.121284 186 17 SH1454 1454 Leu2 tRNA-intron 41 57 31.999838 98.287903 65.1438705 1.813873558 -0.152568 186 18 SH2437 2437 Phe5 5' flank 51.988546 103.39413 77.691338 1.890372601 0.156951 186 19 SH4928 4928 snR9 snR9 46 63 28.073987 78.693234 53.3836105 1.727407943 -0.015404 186 20 SH19788 19788 Negative Control 37.220538 106.761753 71.9911455 1.857279084 -0.195184 186 21 SH12376 12376 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.568837 118.505927 39.568837 79.93709 59.7529635 1.776359449 0.448559 186 22 SH21272 21272 YPL090C spliced 30.454741 86.127409 58.291075 1.765602065 0.016042 186 23 SH11558 11558 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4676 4691 22642.66844 13185.83568 17914.25206 4.253198681 -0.065702 186 24 SH3193 3193 Ser5 3' flank 33.339493 78.624475 55.981984 1.748048286 0.278168 186 25 SH12512 12512 MT_ORF6 + ORF7 (hypothetical) 5'/ORF6 26.731155 109.117692 26.731155 83.386537 55.058846 1.740827105 -0.165754 186 26 SH9079 9079 snR14 / U4 RNA U4 11 27 58.202176 155.224992 106.713584 2.028219706 -0.514893 186 27 SH16391 16391 YER044C-A_5_239773_238459_INTRON_64_151 intron 31.168674 113.832424 31.168674 83.66375 57.416212 1.759034537 0.091952 186 28 SH14336 14336 MT VAR1 includes 5’ processing site VAR1 26.394816 106.061242 26.394816 80.666426 53.530621 1.728602282 -0.156407 186 29 SH18628 18628 YNL096C_14_444312_443395_INTRON_145_489 intron 28.248374 117.767061 28.248374 90.518687 59.3835305 1.773666014 -0.161543 186 30 SH10234 10234 RUF6 RUF6 1016 1035 25.814126 69.051604 47.432865 1.676079357 -0.049003 186 31 SH18462 18462 YMR143W_13_551927_552902_INTRON_25_568 intron 59.379743 175.755342 59.379743 117.375599 88.377671 1.946342552 0.031679 186 32 SH3110 3110 Ser4 5' flank 29.415497 89.329765 59.372631 1.773586294 -0.086903 186 33 SH5137 5137 snR11 3' 29.697574 84.502277 57.0999255 1.756635542 0.011814 186 34 SH4801 4801 snR5 snR5 176 188 33.842251 91.306396 62.5743235 1.796396163 0.044899 186 35 SH4095 4095 SRP RNA SRP RNA 366 378 38.086955 91.339059 64.713007 1.810991581 0.145169 186 36 SH4406 4406 telomerase RNA telomerase 1066 1080 132.663431 181.283007 156.973219 2.195825564 0.1365 186 37 SH6455 6455 snR45 snR45 121 140 27.33064 70.54331 48.936975 1.68963712 0.040426 186 38 SH12378 12378 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.572005 129.689935 34.572005 96.11793 65.3449675 1.815212146 -0.041151 186 39 SH6608 6608 snR47 3' 27.456645 72.648671 50.052658 1.699427145 0.021065 186 40 SH15722 15722 YBR255C-A_2_727032_726576_INTRON_64_157 intron 29.859426 116.409205 29.859426 87.549779 58.7046025 1.768672152 -0.035719 186 41 SH4844 4844 snR8 snR8 1 20 39.674868 104.546974 72.110921 1.858001042 -0.099406 186 42 SH15529 15529 YBR048W_2_332790_333771_INTRON_46_556 intron/exon 27.828969 109.101308 27.828969 82.272339 55.050654 1.740762483 -0.076452 186 43 SH1339 1339 Ile3 tRNA-intron 76 93 27.381442 86.898683 57.1400625 1.756940711 -0.161772 186 44 SH5968 5968 snR36 snR36 296 313 28.916152 84.853056 56.884604 1.754994739 -0.035168 186 45 SH4545 4545 U3b (snR17b) U3b 281 295 28.62512 79.793999 54.2095595 1.734075878 0.007319 186 46 SH19312 19312 YPL198W_16_173151_174701_INTRON_12_420 intron 26.736738 109.17076 26.736738 83.434022 55.08538 1.74103635 -0.16593 186 47 SH6780 6780 snR50 76-90 + 3' 76 41.415417 106.489434 73.9524255 1.868952423 -0.10034 186 48 SH7104 7104 snR63 snR63 26 43 29.911779 89.077416 59.4945975 1.774477531 -0.060134 186 49 SH4148 4148 SRP RNA SRP RNA 631 643 32.338004 89.678786 61.008395 1.7853896 0.033841 186 50 SH19150 19150 YPL075W_16_412249_415357_INTRON_9_759 intron 32.229811 125.477924 32.229811 94.248113 63.238962 1.800984733 -0.06122 186 51 SH18550 18550 YMR230W_13_732413_733140_INTRON_53_462 intron 27.44707 108.996116 27.44707 82.549046 54.998058 1.740347355 -0.105849 186 52 SH2925 2925 Pro8 3' flank 29.655276 93.328367 61.4918215 1.788817358 -0.143778 186 53 SH13942 13942 MT COB Cytbi3 26.960303 105.58827 26.960303 79.627967 53.294135 1.726679418 -0.103494 186 54 SH5747 5747 snR35 5' 30.49143 75.295682 52.893556 1.723402765 0.184422 186 55 SH3880 3880 RNaseP 366-369 + 3' 366 42.613367 92.236285 67.424826 1.828819834 0.217793 186 56 SH10421 10421 RUF8 RUF8 31 51 31.424218 84.913097 58.1686575 1.764689041 0.07995 186 57 SH7618 7618 snR189 snR189 161 178 27.910609 79.014961 53.462785 1.728051578 -0.030486 186 58 SH16335 16335 YDR471W_4_1401759_1402553_INTRON_32_415 3' exon 33.309701 114.951183 33.309701 82.641482 57.9755915 1.763245188 0.199888 186 59 SH17227 17227 YHR077C_8_255757_252375_INTRON_7_119 5' exon 28.85438 115.676423 28.85438 87.822043 58.3382115 1.765953111 -0.086348 186 60 SH21112 21112 YNL096C spliced 28.447013 97.384668 62.9158405 1.798760003 -0.265268 186 61 SH14177 14177 MT COB intron/exon6 25.642815 100.703778 25.642815 76.060963 50.851889 1.70630709 -0.154599 186 62 SH2965 2965 Ser1 tRNA 56 68 33.955506 91.754014 62.85476 1.798338172 0.037823 186 63 SH11021 11021 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1991 2004 36988.44695 22427.66816 29708.05755 4.472874257 -0.263372 186 64 SH11919 11919 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6481 6501 32.724528 81.568957 57.1467425 1.75699148 0.196375 186 65 SH261 261 Arg4 5' flank 28.457525 89.020081 58.738803 1.768925092 -0.125845 186 66 SH440 440 Asp1 tRNA 21 33 134.055455 255.077304 194.5663795 2.289067798 -0.427877 186 67 SH11171 11171 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2741 2757 101.11039 155.450545 128.2804675 2.108160534 0.082136 186 68 SH15914 15914 YDL083C_4_307788_306925_INTRON_25_456 intron 32.785604 117.973905 32.785604 86.188301 59.4869525 1.774421721 0.113654 186 69 SH18620 18620 YNL096C_14_444312_443395_INTRON_145_489 5' exon 28.519389 114.336319 28.519389 86.81693 57.6681595 1.760936091 -0.084171 186 70 SH20461 20461 YGL183C spliced 28.648371 92.840008 60.7441895 1.783504742 -0.181896 186 71 SH20495 20495 YGL251C spliced 28.231689 78.586478 53.4090835 1.727615126 -0.00349 186 72 SH10888 10888 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1326 1346 152.110493 187.716639 169.913566 2.230228055 0.240413 186 73 SH9035 9035 snR17a / U3a U3a 461 476 51.538067 100.915743 76.226905 1.882108287 0.197515 186 74 SH12320 12320 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.395626 103.407986 24.395626 80.01236 52.203993 1.717703723 -0.299218 186 75 SH9717 9717 RUF4 RUF4 361 377 31.130003 91.791078 61.4605405 1.788596375 -0.053129 186 76 SH3593 3593 Val1 5' flank 29.383532 77.202062 53.292797 1.726668514 0.089652 186 77 SH8329 8329 snoRNA cluster4 intergenic/snR53 29.590715 99.154674 29.590715 70.563959 50.077337 1.699641226 0.192907 186 78 SH5214 5214 snR30 5' 29.670605 78.374459 54.022532 1.732574935 0.092881 186 79 SH11768 11768 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5726 5744 30.068256 79.792658 54.930457 1.739813212 0.10001 186 80 SH10496 10496 RUF8 RUF8 406 423 30.863207 87.370802 59.1170045 1.77171242 0.0117 186 81 SH16703 16703 YGL031C_7_438393_437938_INTRON_1_456 intron 28.09526 104.445842 28.09526 77.350582 52.722921 1.721999463 0.003254 186 82 SH13342 13342 MT COX1 COX1-ai5a 29.217959 109.638273 29.217959 81.420314 55.3191365 1.742875392 0.025742 186 83 SH13148 13148 MT COX1 intronic 37.833769 130.617143 37.833769 93.783374 65.8085715 1.818282464 0.085603 186 84 SH9364 9364 RUF1 RUF1 396 413 29.478213 92.376679 60.927446 1.784812973 -0.135938 186 85 SH7379 7379 snR68 snR68 116 133 30.557862 79.425635 54.9917485 1.740297529 0.135059 186 86 SH14878 14878 MT tRNA Ala 5' / tRNA 28.376283 110.83043 28.376283 83.454147 55.915215 1.747529999 -0.054035 186 87 SH5357 5357 snR30 3' 32.804036 86.462417 59.6332265 1.775488308 0.109494 186 88 SH20261 20261 YDR397C spliced 32.909249 87.240142 60.0746955 1.778691578 0.099927 186 89 SH2245 2245 Phe1 3' flank 115.563896 178.712126 147.138011 2.167724881 -0.003111 186 90 SH2346 2346 Phe3 tRNA 56 70 191.432132 292.734162 242.083147 2.383964556 -0.220833 186 91 SH13338 13338 MT COX1 COX1-ai5a 26.391574 96.656437 26.391574 71.264863 48.8282185 1.688670879 -0.036673 186 92 SH4091 4091 SRP RNA SRP RNA 346 362 34.571059 148.385057 91.478058 1.961316936 -0.927181 186 93 SH10788 10788 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 826 847 40.730541 164.901624 102.8160825 2.012061052 -0.98438 186 94 SH7998 7998 snoRNA cluster 2 intergenic 29.87719 122.741653 29.87719 93.864463 61.8708265 1.791485918 -0.142661 186 95 SH16650 16650 YFR031C-A_6_221405_220494_INTRON_5_151 intron 30.287346 105.768655 30.287346 76.481309 53.3843275 1.727413776 0.156126 186 96 SH111 111 Arg1 5' flank 28.337042 74.154858 51.24595 1.709659549 0.061643 186 97 SH8880 8880 LSR1 / U2 RNA U2 1041 1057 30.751569 80.420473 55.586021 1.744965587 0.134503 186 98 SH366 366 Asn1 5' flank 30.979495 79.501123 55.240309 1.742256099 0.159928 186 99 SH11932 11932 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6546 6561 33.543238 82.597798 58.070518 1.7639557 0.210057 186 100 SH15792 15792 YDL029W_4_399336_400634_INTRON_23_145 3' exon 34.971947 125.441258 34.971947 91.469311 63.220629 1.800858812 0.069345 186 101 SH15672 15672 YBR191W_2_606228_607098_INTRON_12_399 intron 29.187065 125.396052 29.187065 97.208987 63.198026 1.800703513 -0.228101 186 102 SH4461 4461 telomerase RNA 3' 33.536988 102.633695 68.0853415 1.83305362 -0.200323 186 103 SH3971 3971 RNase MRP RNaseMRP 271 285 30.690309 81.76397 56.2271395 1.74994599 0.106784 186 104 SH8888 8888 LSR1 / U2 RNA U2 1081 1095 32.446935 97.761909 65.104422 1.813610488 -0.129812 187 2 SH2125 2125 Met1 tRNA 11 25 158.350816 200.139109 179.2449625 2.253446959 0.180704 187 3 SH20892 20892 YLR287C-A spliced 36.479733 95.06721 65.7734715 1.818050764 0.027079 187 4 SH16832 16832 YGL178W_7_167356_170575_INTRON_4_643 intron 27.334349 111.445193 27.334349 85.110844 56.2225965 1.749910899 -0.144202 187 5 SH5053 5053 snR10 3' 27.22443 88.007497 57.6159635 1.760542829 -0.185302 187 6 SH21026 21026 YMR116C spliced 29.963957 79.651826 54.8078915 1.738843095 0.095232 187 7 SH9681 9681 RUF4 RUF4 181 201 28.028975 66.926089 47.477532 1.676488135 0.139525 187 8 SH20056 20056 YBR220C spliced 29.821279 73.447252 51.6342655 1.712938004 0.167434 187 9 SH6403 6403 snR43 3' 32.286324 83.867087 58.0767055 1.764001972 0.135349 187 10 SH14907 14907 MT tRNA Tyr 5' 28.179276 105.173758 28.179276 77.994482 53.086879 1.724987194 0.00058 187 11 SH16537 16537 YER131W_5_423587_424307_INTRON_1_361 intron 27.905159 97.960802 27.905159 71.055643 49.480401 1.694433211 0.073545 187 12 SH15912 15912 YDL083C_4_307788_306925_INTRON_25_456 intron 29.320029 120.718306 29.320029 92.398277 60.859153 1.784325904 -0.143501 187 13 SH14558 14558 MT 21S rRNA 21S rRNA3 2458.248927 3625.882931 2458.248927 1168.634004 1813.441466 3.258503542 0.872037 187 14 SH19519 19519 ACT1 28.971543 116.594976 72.7832595 1.862031501 -0.58439 187 15 SH19337 19337 YPL241C_16_96258_95372_INTRON_26_105 intron 29.487421 140.074455 29.487421 111.587034 70.5372275 1.848418386 -0.480155 187 16 SH13970 13970 MT COB Cytbi3 25.488106 84.744924 25.488106 60.256818 42.872462 1.632178424 0.064329 187 17 SH11483 11483 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4301 4314 36.680412 82.24881 59.464611 1.774258582 0.325879 187 18 SH19909 19909 YAL001C spliced 30.499583 83.91999 57.2097865 1.757470327 0.058177 187 19 SH2470 2470 Phe5 3' flank 31.248704 74.909445 53.0790745 1.724923342 0.235794 187 20 SH3668 3668 Val2 3' flank 27.090347 81.593912 54.3421295 1.735136653 -0.118846 187 21 SH18109 18109 YLR367W_12_855877_857316_INTRON_698_1180 intron 27.175273 106.611906 27.175273 80.436633 53.805953 1.730830328 -0.098646 187 22 SH14713 14713 MT tRNA cys; tRNA his 5' 27.078167 99.877043 27.078167 73.798876 50.4385215 1.702762348 -0.02074 187 23 SH18675 18675 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.228157 102.977613 29.228157 74.749456 51.9888065 1.715909848 0.111986 187 24 SH8170 8170 snoRNA cluster 3; snR70 29.076523 107.925853 29.076523 79.84933 54.4629265 1.736100974 0.036106 187 25 SH14048 14048 MT COB Cytbi4 33.472716 120.930709 33.472716 88.457993 60.9653545 1.785083103 0.099872 187 26 SH5918 5918 snR36 snR36 46 67 28.742876 72.056279 50.3995775 1.702426896 0.117088 187 27 SH8818 8818 LSR1 / U2 RNA U2 731 748 28.844305 81.495582 55.1699435 1.741702539 0.000565 187 28 SH2808 2808 Pro6 3' flank 349.096227 311.02908 330.0626535 2.518596387 0.43501 187 29 SH21073 21073 YMR225C spliced 28.87343 80.810492 54.841961 1.739112976 0.010919 187 30 SH3252 3252 Thr1 3' flank 27.560409 77.497922 52.5291655 1.720400501 -0.034867 187 31 SH6567 6567 snR47 5' 47.734061 99.62587 73.6799655 1.867349414 0.156493 187 32 SH8464 8464 snoRNA cluster 5 3' 27.398363 100.593181 27.398363 74.194818 50.7965905 1.705834563 -0.003236 187 33 SH16315 16315 YDR471W_4_1401759_1402553_INTRON_32_415 intron 29.95135 116.733703 29.95135 87.782353 58.8668515 1.769870808 -0.035709 187 34 SH14805 14805 "MT tRNAs (Lys, Arg1, Gly)" intergenic 26.989546 108.686982 26.989546 82.697436 54.843491 1.739125092 -0.13932 187 35 SH16706 16706 YGL031C_7_438393_437938_INTRON_1_456 intron 30.942649 122.37181 30.942649 92.429161 61.685905 1.790185941 -0.071925 187 36 SH805 805 Glu1 tRNA 41 53 1669.755883 1949.812199 1809.784041 3.257626754 -0.440794 187 37 SH4682 4682 snR4 5' 27.375298 70.86391 49.119604 1.691254857 0.039219 187 38 SH16629 16629 YFL039C_6_54695_53260_INTRON_11_318 intron 30.064616 103.311303 30.064616 74.246687 52.1556515 1.717301375 0.171908 187 39 SH3695 3695 Val3 5' flank 27.888438 74.830447 51.3594425 1.710620301 0.022496 187 40 SH10829 10829 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1031 1049 599.130201 620.036175 609.583188 2.785032981 0.017171 187 41 SH16254 16254 YDR397C_4_1266887_1266355_INTRON_38_129 intron 29.38754 120.310216 29.38754 91.922676 60.655108 1.78286738 -0.132439 187 42 SH4066 4066 SRP RNA SRP RNA 221 240 27.972511 81.792481 54.882496 1.739433854 -0.060901 187 43 SH4862 4862 snR8 snR8 91 105 29.566863 87.217948 58.3924055 1.766356367 -0.043023 187 44 SH17680 17680 YKL006W_11_431544_432358_INTRON_130_527 intron 37.795465 122.540761 37.795465 85.745296 61.7703805 1.790780277 0.266934 187 45 SH16451 16451 YER074W-A_0_5_307649_INTRON_95_196 5' exon 39.807546 144.183872 39.807546 105.376326 72.591936 1.860888379 -0.112957 187 46 SH20581 20581 YHR016C spliced 93.57095 155.714966 124.642958 2.095667747 -0.008881 187 47 SH13608 13608 MT ATP8/AAP1 3' 27.520852 103.032702 27.520852 76.51185 52.016351 1.716139883 -0.024752 187 48 SH7673 7673 snoRNA cluster1 snR78 28.034179 102.69546 28.034179 75.661281 51.84773 1.714729747 0.021261 187 49 SH2322 2322 Phe3 5' flank 28.153047 69.609623 48.881335 1.689143058 0.110306 187 50 SH1694 1694 Leu6 tRNA 36 51 32.801596 84.977696 58.889646 1.770038944 0.13619 187 51 SH19693 19693 Negative Control 30.19911 85.102205 57.6506575 1.760804265 0.023285 187 52 SH19801 19801 Negative Control 32.234481 89.009347 60.621914 1.782629644 0.041141 187 53 SH12579 12579 MT_15S MT_15S 29.328055 116.340425 29.328055 88.01237 58.6702125 1.768417661 -0.067904 187 54 SH9050 9050 snR17a / U3a 3' 26.124944 67.544965 46.8349545 1.670570103 -0.004785 187 55 SH15598 15598 YBR089C-A_2_426588_426148_INTRON_1_114 intron 27.362879 103.81031 27.362879 77.447431 52.405155 1.71937401 -0.047767 187 56 SH5186 5186 snR13 snR13 86 102 42.734862 107.00777 74.871316 1.874315467 -0.083309 187 57 SH6564 6564 snR47 5' 27.975151 78.895534 53.4353425 1.727828597 -0.024619 187 58 SH14642 14642 MT 21S rRNA intronic 26.474141 90.633955 26.474141 65.159814 45.8169775 1.661026436 0.055779 187 59 SH18596 18596 YNL069C_14_494998_493953_INTRON_29_477 intron 31.138294 113.137984 31.138294 82.99969 57.068992 1.756400202 0.102974 187 60 SH20374 20374 YER179W spliced 31.927134 91.412748 61.669941 1.790073533 -0.012899 187 61 SH13753 13753 MT COB Exon1 28.181677 102.99161 28.181677 75.809933 51.995805 1.715968306 0.029183 187 62 SH6045 6045 snR37 snR37 141 159 31.494324 91.663618 61.578971 1.789432427 -0.035406 187 63 SH7658 7658 snoRNA cluster1 5' / snR78 28.64187 106.720856 28.64187 79.078986 53.860428 1.7312698 0.017433 187 64 SH5504 5504 snR32 181-188+3' 181 26.836146 75.697116 51.266631 1.709834779 -0.0624 187 65 SH2640 2640 Pro3 3' flank 29.055616 78.351416 53.703516 1.73000272 0.053711 187 66 SH8274 8274 snoRNA cluster4 snR67 33.085749 134.360186 33.085749 102.274437 67.680093 1.830460947 -0.204781 187 67 SH11887 11887 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6321 6338 30.049585 74.80789 52.4287375 1.7195694 0.163426 187 68 SH2057 2057 Lys4 5' flank 27.365891 81.449948 54.4079195 1.735662119 -0.09801 187 69 SH15616 15616 YBR181C_2_592732_591670_INTRON_7_358 intron 29.4224 112.879873 29.4224 84.457473 56.9399365 1.755416978 0.000175 187 70 SH2442 2442 Phe5 5' flank - tRNA1 1 27.445318 84.46737 55.956344 1.747849331 -0.12897 187 71 SH5156 5156 snR13 5' 25.38099 73.575239 49.4781145 1.694413141 -0.14248 187 72 SH9242 9242 snR6 / U6 RNA U6 81 98 36.039383 99.656819 67.848101 1.831537697 -0.079669 187 73 SH2477 2477 Phe5 3' flank 27.042 81.419507 54.2307535 1.734245639 -0.120069 187 74 SH7284 7284 snR66 5' 27.171691 85.006432 56.0890615 1.748878173 -0.154219 187 75 SH7591 7591 snR189 snR189 26 42 36.255164 102.185051 69.2201075 1.840232269 -0.126433 187 76 SH11365 11365 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3711 3728 805.916236 1092.122446 949.019341 2.977275063 -0.491027 187 77 SH11996 11996 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6866 6879 575.278983 945.51461 760.3967965 2.881040279 -0.704925 187 78 SH2694 2694 Pro4 3' flank 27.527524 84.166754 55.847139 1.747000929 -0.119765 187 79 SH15312 15312 YAL003W_1_142172_143158_INTRON_81_446 exon/intron 27.727045 108.581799 27.727045 81.854754 54.7908995 1.73870843 -0.07827 187 80 SH15396 15396 YBL050W_2_125087_126081_INTRON_31_146 5' exon 32.868181 124.275319 32.868181 92.407138 62.6376595 1.796835522 -0.004398 187 81 SH15275 15275 MT 9S rRNA 9S 26.773617 95.398503 26.773617 69.624886 48.1992515 1.683040294 0.013346 187 82 SH15825 15825 YDL064W_4_337486_338069_INTRON_39_148 intron 26.760981 93.492253 26.760981 67.731272 47.2461265 1.674366208 0.038896 187 83 SH17921 17921 YLR078C_12_286560_285737_INTRON_4_92 5' exon 27.385347 111.849624 27.385347 85.464277 56.424812 1.751470121 -0.144839 187 84 SH13549 13549 MT COX1 intronic 32.672487 126.477797 32.672487 94.80531 63.7388985 1.804404554 -0.06153 187 85 SH19191 19191 YPL079W_16_406631_407534_INTRON_12_432 3' exon 30.660678 120.507873 30.660678 90.847195 60.7539365 1.783574423 -0.057471 187 86 SH5699 5699 snR34 snR34 416 433 31.013582 91.914936 61.464259 1.78862265 -0.060229 187 87 SH12849 12849 MT COX1 COX1ai1 28.857763 107.144037 28.857763 79.286274 54.0720185 1.732972582 0.028962 187 88 SH3968 3968 RNase MRP RNaseMRP 256 273 31.122089 82.783596 56.9528425 1.755515404 0.10631 187 89 SH19865 19865 Negative Control 31.154222 85.861965 58.5080935 1.767215947 0.05121 187 90 SH14471 14471 MT 21S rRNA 21S rRNA3 28.630476 95.576963 28.630476 67.946487 48.2884815 1.683843549 0.165896 187 91 SH15772 15772 YCR097W_3_293828_294314_INTRON_106_159 3' exon 27.943181 101.329865 27.943181 74.386684 51.1649325 1.708972406 0.032145 187 92 SH7657 7657 snoRNA cluster1 5' 31.544969 153.802565 31.544969 123.257596 77.4012825 1.888748157 -0.627659 187 93 SH3989 3989 RNase MRP 3' 26.927405 59.513693 43.220549 1.635690279 0.179617 187 94 SH14798 14798 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys 29.234486 107.177543 29.234486 78.943057 54.0887715 1.733107118 0.057743 187 95 SH19491 19491 YPT1 27.454685 90.635288 59.0449865 1.771183028 -0.201679 187 96 SH689 689 Gln3 5' flank 30.03969 93.970571 62.0051305 1.792427626 -0.137149 187 97 SH13495 13495 MT COX1 intronic 32.668899 122.503098 32.668899 90.834199 61.751549 1.790647856 0.025267 187 98 SH19462 19462 CYC1 30.762554 80.13263 55.447592 1.74388269 0.138765 187 99 SH13236 13236 MT COX1 COX1-ai4 28.748473 101.443744 28.748473 73.695271 51.221872 1.709455447 0.095027 187 100 SH11557 11557 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4671 4684 12823.09836 8524.568617 10673.83349 4.028320423 -0.117998 187 101 SH6765 6765 snR50 snR50 1 18 128.896631 195.38388 162.1402555 2.209890853 -0.024729 187 102 SH7336 7336 snR68 5' 28.852041 78.78576 53.8189005 1.730934821 0.034928 187 103 SH10772 10772 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 746 764 28.539622 79.520832 54.030227 1.732636792 0.005117 187 104 SH10370 10370 RUF7 RUF7 461 476 32.807479 87.014489 59.910984 1.777506453 0.099788 188 2 SH7409 7409 snR69 5' 29.281627 73.143792 51.2127095 1.709377754 0.137171 188 3 SH6241 6241 snR42 5' - 5 -14 5 29.743025 88.402074 59.0725495 1.771385715 -0.055934 188 4 SH14929 14929 MT tRNA Asn 5' 25.372113 89.27216 25.372113 64.900047 45.13608 1.654523839 -0.019634 188 5 SH6886 6886 snR56 snR56 61 82 29.870235 76.146676 53.0084555 1.72434515 0.134387 188 6 SH19270 19270 YPL143W_16_282121_282969_INTRON_20_544 intron 29.100301 116.773578 29.100301 88.673277 58.886789 1.770017874 -0.089911 188 7 SH19446 19446 CYC1 30.435524 88.547253 59.4913885 1.774454105 -0.027667 188 8 SH16576 16576 YER179W_5_548416_549512_INTRON_133_224 intron 27.688268 119.124921 27.688268 92.436653 60.0624605 1.778603119 -0.220784 188 9 SH9205 9205 snR7 U5 RNA 3' 27.770965 81.579568 54.6752665 1.737790909 -0.071917 188 10 SH16045 16045 YDL191W_4_117665_118518_INTRON_4_494 intron 25.953315 98.105035 25.953315 73.15172 49.5525175 1.695065724 -0.093997 188 11 SH8910 8910 LSR1 / U2 RNA 3' 28.072933 83.037893 55.555413 1.74472638 -0.069279 188 12 SH14010 14010 MT COB intronic 27.328466 115.897261 27.328466 89.568795 58.4486305 1.76677434 -0.195722 188 13 SH16984 16984 YGR118W_7_726968_727725_INTRON_66_385 5' exon 33.07875 131.214561 33.07875 99.135811 66.1072805 1.820249292 -0.141668 188 14 SH10568 10568 RUF8 RUF8 766 784 28.853433 79.402224 54.1278285 1.733420604 0.027216 188 15 SH10740 10740 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 586 604 33.724836 80.846334 57.285585 1.758045352 0.25044 188 16 SH18679 18679 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.697182 108.920008 27.697182 82.222826 54.960004 1.740046756 -0.084793 188 17 SH12688 12688 MT tRNA Trp 3' 28.075002 102.8719 28.075002 75.796898 51.93595 1.71546808 0.02221 188 18 SH20565 20565 YHR010W spliced 31.044483 80.592466 55.8184745 1.746777963 0.144466 188 19 SH2989 2989 Ser2 5' flank 27.404632 78.630483 53.0175575 1.724419716 -0.060073 188 20 SH3430 3430 Trp1 5' flank 28.005433 71.399303 49.702368 1.696377081 0.075823 188 21 SH17823 17823 YKR057W_11_551293_551878_INTRON_25_346 intron 27.975887 98.991581 27.975887 72.015694 49.9957905 1.69893344 0.065541 188 22 SH100 100 Ala2 3' flank 29.941398 96.120014 63.030706 1.799552172 -0.176521 188 23 SH10367 10367 RUF7 RUF7 446 462 29.57138 91.758672 60.665026 1.782938388 -0.12133 188 24 SH5072 5072 snR11 5' 29.303656 80.841058 55.072357 1.740933664 0.038409 188 25 SH7645 7645 snoRNA cluster1 5' 28.994039 101.158367 28.994039 73.164328 51.0791835 1.708243946 0.118293 188 26 SH7692 7692 snoRNA cluster1 intergenic 40.254115 126.660856 40.254115 87.406741 63.830428 1.805027756 0.281831 188 27 SH19874 19874 Negative Control 31.066798 85.669908 58.368353 1.766177439 0.050913 188 28 SH5626 5626 snR34 snR34 51 68 28.958111 78.221447 53.589779 1.729081966 0.04904 188 29 SH7509 7509 snR71 3' 31.362555 88.374971 59.868763 1.777200285 0.015504 188 30 SH16392 16392 YER044C-A_5_239773_238459_INTRON_64_151 intron 29.155339 105.320752 29.155339 77.165413 53.160376 1.725588044 0.075438 188 31 SH4730 4730 snR4 186 + 3' 186 27.250984 70.926883 49.0889335 1.690983597 0.029601 188 32 SH14647 14647 MT 21S rRNA intronic 27.885704 94.114508 27.885704 67.228804 47.557254 1.67721677 0.125326 188 33 SH14130 14130 MT COB intronic 25.683545 98.985224 25.683545 74.301679 49.992612 1.698905828 -0.129087 188 34 SH4264 4264 telomerase RNA telomerase 356 373 27.347754 77.162751 52.2552525 1.718129951 -0.045122 188 35 SH5478 5478 snR32 snR32 51 67 50.047016 108.587764 79.31739 1.899368415 0.025316 188 36 SH8566 8566 snR19 / U1 RNA U1 326 345 26.696233 68.236797 47.466515 1.676387347 0.027096 188 37 SH12722 12722 MT COX1 5' 27.239748 99.022921 27.239748 72.783173 50.0114605 1.699069538 0.004016 188 38 SH17662 17662 YKL002W_11_437416_438182_INTRON_61_128 3' exon 34.727821 123.106166 34.727821 89.378345 62.053083 1.792763364 0.110316 188 39 SH13367 13367 MT COX1 intronic 27.893326 95.728754 27.893326 68.835428 48.364377 1.684525598 0.10319 188 40 SH6839 6839 snR52 3' 28.247997 74.096334 51.1721655 1.709033796 0.056503 188 41 SH13952 13952 MT COB Cytbi3 25.950216 94.463045 25.950216 69.512829 47.7315225 1.678805287 -0.045265 188 42 SH1287 1287 Ile2 131-133 + 3' flank 131 150 27.957217 78.95015 53.4536835 1.727977638 -0.02652 188 43 SH4625 4625 snR3 snR3 41 57 31.758935 87.915856 59.8373955 1.776972682 0.040371 188 44 SH9410 9410 RUF1 3' 26.378467 68.203282 47.2908745 1.674777345 0.004507 188 45 SH9986 9986 RUF5-1 RUF5-1 736 756 28.44594 77.647254 53.046597 1.724657529 0.022793 188 46 SH5100 5100 snR11 snR11 101 119 26.773752 79.269967 53.0218595 1.724454955 -0.112065 188 47 SH5277 5277 snR30 snR30 236 252 27.629582 83.616183 55.6228825 1.745253491 -0.106222 188 48 SH15877 15877 YDL082W_4_308423_309387_INTRON_5_369 intron 28.286179 104.356899 28.286179 77.07072 52.6784495 1.721632984 0.019643 188 49 SH12813 12813 MT COX1 COX1ai1 28.557712 99.972216 28.557712 72.414504 50.486108 1.703171892 0.099883 188 50 SH16749 16749 YGL076C_7_365994_364333_INTRON_565_1032 intron 28.525206 109.409205 28.525206 81.883999 55.2046025 1.741975287 -0.025156 188 51 SH14083 14083 MT COB Cytbi4 28.232357 98.695807 28.232357 71.46345 49.8479035 1.697646898 0.090503 188 52 SH4017 4017 SRP RNA 5' 29.972366 74.186397 52.0793815 1.716665818 0.166931 188 53 SH322 322 Arg5 5' flank 31.446331 84.527763 57.987047 1.763330993 0.087928 188 54 SH21388 21388 Phe1_5 spliced 85.523875 113.148743 99.336309 1.997108019 0.468777 188 55 SH17859 17859 YKR095W-A_11_625432_625839_INTRON_39_113 3' exon 90.111614 205.488518 90.111614 116.376904 103.244259 2.013865912 0.472393 188 56 SH5923 5923 snR36 snR36 71 88 30.098922 82.944795 56.5218585 1.752216433 0.05856 188 57 SH10930 10930 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1536 1549 51.147692 104.39278 77.770236 1.890813417 0.123237 188 58 SH21165 21165 YNL302C spliced 29.009942 83.807389 56.4086655 1.751345825 -0.016652 188 59 SH156 156 Arg1 3' flank 31.276311 92.076767 61.676539 1.790119995 -0.05166 188 60 SH3181 3181 Ser5 tRNA 26 42 28.641274 79.785357 54.2133155 1.734105968 0.008491 188 61 SH21867 21867 copy of SH19502 35.122793 85.401612 60.2622025 1.780045 0.212405 188 62 SH7772 7772 snoRNA cluster1 snR76/intergenic 35.35837 115.96721 35.35837 81.60884 58.483605 1.767034135 0.299226 188 63 SH19308 19308 YPL198W_16_173151_174701_INTRON_12_420 intron 26.817715 100.459483 26.817715 74.641768 50.7297415 1.705262649 -0.050251 188 64 SH14834 14834 MT tRNA Asp 5' 27.043957 95.343952 27.043957 69.299995 48.171976 1.682794461 0.037182 188 65 SH14311 14311 MT VAR1 includes 5’ processing site VAR1 26.782708 105.00567 26.782708 79.222962 53.002835 1.7242991 -0.110841 188 66 SH582 582 Gln1 5' flank 30.746495 90.283614 60.5150545 1.781863429 -0.044103 188 67 SH10727 10727 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 521 534 347.354332 500.851874 424.103103 2.62747145 -0.339283 188 68 SH10165 10165 RUF6 RUF6 671 683 37.437713 85.219991 61.328852 1.787664835 0.271284 188 69 SH12599 12599 MT_15S MT_15S 31.311929 115.225173 31.311929 84.913244 58.1125865 1.764270206 0.075156 188 70 SH6599 6599 snR47 3' 45.343509 112.833954 79.0887315 1.89811461 -0.139252 188 71 SH6169 6169 snR40 5' 24.809419 71.584829 48.197124 1.683021124 -0.160028 188 72 SH20036 20036 YBR186W spliced 29.766017 79.318551 54.542284 1.73673332 0.086941 188 73 SH11362 11362 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3696 3711 66.376338 106.422297 86.3993175 1.936510312 0.327081 188 74 SH20323 20323 YER056C-A spliced 32.633635 85.382395 59.008015 1.770911005 0.121969 188 75 SH19465 19465 ADH1 28.062086 83.909688 55.985887 1.748078563 -0.080464 188 76 SH14354 14354 MT ORF9 and ORF10 (hypothetical) 5' 27.820368 99.406081 27.820368 72.585713 50.2030405 1.700730021 0.047241 188 77 SH21062 21062 YMR201C spliced 32.958174 91.798774 62.378474 1.795034746 0.011352 188 78 SH7929 7929 snoRNA cluster1 snR72 27.123009 108.558025 27.123009 82.435016 54.7790125 1.738614199 -0.126844 188 79 SH17215 17215 YHR039C-A_8_187670_187164_INTRON_4_165 3' exon 40.349123 143.756729 40.349123 104.407606 72.3783645 1.859608765 -0.082651 188 80 SH14164 14164 MT COB intronic 27.900545 101.355138 27.900545 74.454593 51.177569 1.709079652 0.028355 188 81 SH455 455 Asp1 3' flank 28.680848 77.41342 53.047134 1.724661925 0.041309 188 82 SH9354 9354 RUF1 RUF1 346 370 27.68905 65.983895 46.8364725 1.670584179 0.129632 188 83 SH4133 4133 SRP RNA SRP RNA 556 568 37.621933 94.975926 66.2989295 1.821506516 0.05492 188 84 SH203 203 Arg2 3' flank 30.697969 82.514792 56.6063805 1.752865386 0.092977 188 85 SH12032 12032 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS/3'flank 7046 7069 31.117625 73.240479 52.179052 1.717496184 0.250433 188 86 SH13438 13438 MT COX1 intronic 26.998112 109.498015 26.998112 83.499903 55.2490075 1.742324481 -0.148391 188 87 SH4459 4459 telomerase RNA 3' 29.394907 84.559838 56.9773725 1.755702418 -0.00295 188 88 SH16732 16732 YGL076C_7_365994_364333_INTRON_565_1032 intron 26.914678 104.122378 26.914678 78.2077 52.561189 1.720665181 -0.088666 188 89 SH10529 10529 RUF8 RUF8 571 592 28.85946 71.096118 49.977789 1.698777039 0.137756 188 90 SH830 830 Glu2 5' flank 25.994088 90.000289 57.9971885 1.763406941 -0.294855 188 91 SH5873 5873 snR35 3' 33.772021 129.959555 81.865788 1.913102446 -0.679196 188 92 SH16907 16907 YGL232W_7_62074_63001_INTRON_58_115 intron 30.80897 128.552896 30.80897 98.743926 64.776448 1.81141713 -0.194383 188 93 SH11936 11936 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6566 6583 78.212577 131.925916 105.0692465 2.021475618 0.093184 188 94 SH5150 5150 snR13 5' 27.462838 78.030465 52.7466515 1.722194895 -0.048405 188 95 SH5254 5254 snR30 snR30 121 133 38.620339 86.266132 62.4432355 1.795485398 0.27309 188 96 SH10615 10615 RUF8 3' 29.462671 98.468395 63.965533 1.805946023 -0.235435 188 97 SH5656 5656 snR34 snR34 201 222 27.946006 69.628582 48.787294 1.688306731 0.09583 188 98 SH20690 20690 YIL133C spliced 114.503243 159.8567 137.1799715 2.137290708 0.176994 188 99 SH18189 18189 YML024W_13_225889_226697_INTRON_4_401 intron 28.702496 106.247633 28.702496 78.545137 53.6238165 1.72935772 0.028199 188 100 SH13361 13361 MT COX1 intronic 27.608704 99.542107 27.608704 72.933403 50.2710535 1.701317987 0.027947 188 101 SH9108 9108 snR14 / U4 RNA 156-160 + 3' 156 28.831045 74.795801 51.813423 1.714442284 0.08559 188 102 SH7895 7895 snoRNA cluster1 intergenic 31.187909 123.86194 31.187909 93.674031 62.43097 1.795400083 -0.082054 188 103 SH9955 9955 RUF5-1 RUF5-1 581 598 28.773698 81.444565 55.1091315 1.741223567 -0.003425 188 104 SH7314 7314 snR66 snR66 61 80 28.527857 80.66879 54.5983235 1.737179307 -0.01001 189 2 SH17931 17931 YLR093C_12_327416_326514_INTRON_17_157 5' exon 31.799169 113.233442 31.799169 82.434273 57.116721 1.756763267 0.141658 189 3 SH4420 4420 telomerase RNA telomerase 1136 1155 29.618691 72.695354 51.1570225 1.708905259 0.164893 189 4 SH12644 12644 MT_15S MT_15S 27.426838 94.673998 27.426838 68.24716 47.836999 1.679763927 0.078946 189 5 SH4451 4451 telomerase RNA 1291-1301 + 3' 1291 29.465421 86.206795 57.836108 1.76219906 -0.029583 189 6 SH17584 17584 YJL191W_10_73786_74610_INTRON_11_418 intron 28.722236 105.438066 28.722236 77.71583 53.219033 1.726066979 0.040122 189 7 SH102 102 Ala2 3' flank 30.081123 74.345749 52.213436 1.717782274 0.171607 189 8 SH7054 7054 snR62 snR62 61 80 29.487315 84.071324 56.7793195 1.754190183 0.010214 189 9 SH20175 20175 YDL189W spliced 47.177335 104.49837 75.8378525 1.879886027 0.049587 189 10 SH16468 16468 YER102W_5_362729_363698_INTRON_1_360 5' exon 27.694787 95.727763 27.694787 69.032976 48.3638815 1.684521148 0.086683 189 11 SH19893 19893 snR17A spliced 29.81635 102.695894 66.256122 1.821226013 -0.302062 189 12 SH11975 11975 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6761 6778 1462.918799 905.81847 1184.368635 3.073486897 0.586851 189 13 SH13139 13139 MT COX1 intronic 30.542281 130.586489 30.542281 101.044208 65.7932445 1.818181304 -0.248577 189 14 SH17935 17935 YLR093C_12_327416_326514_INTRON_17_157 intron 32.849335 148.815397 32.849335 116.966062 74.9076985 1.874526454 -0.486256 189 15 SH17876 17876 YLR048W_12_242233_243350_INTRON_91_449 exon/intron 27.155207 101.592489 27.155207 75.437282 51.2962445 1.710085571 -0.036339 189 16 SH8138 8138 snoRNA cluster 3; intergenic 35.406309 111.812569 35.406309 77.40626 56.4062845 1.751327494 0.382827 189 17 SH7355 7355 snR68 5' - 13 -4 13 32.650957 90.093729 61.372343 1.787972704 0.03959 189 18 SH3760 3760 Val4 tRNA 26 40 28.934961 82.110191 55.522576 1.744469607 -0.001044 189 19 SH6246 6246 snR42 snR42 11 26 55.719093 109.012047 82.36557 1.915745708 0.114449 189 20 SH18716 18716 YNL130C_14_381156_379555_INTRON_30_470 intron 28.216116 103.631309 28.216116 76.415193 52.3156545 1.718631663 0.023523 189 21 SH17620 17620 YJR094W-A_10_608000_608553_INTRON_3_277 5' exon 27.96313 111.086842 27.96313 84.123712 56.043421 1.748524638 -0.089671 189 22 SH12049 12049 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7131 7148 29.720091 93.027312 61.3737015 1.787982317 -0.135858 189 23 SH19476 19476 ADH1 31.76067 75.259932 53.510301 1.728437394 0.26174 189 24 SH9893 9893 RUF5-1 RUF5-1 271 287 29.49015 91.515949 60.5030495 1.781777265 -0.120914 189 25 SH10512 10512 RUF8 RUF8 486 508 29.443103 83.875063 56.659083 1.753269541 0.010465 189 26 SH13604 13604 MT ATP8/AAP1 ATP8 29.220445 114.915134 29.220445 86.694689 57.957567 1.763110146 -0.049488 189 27 SH21688 21688 copy of SH10243 26.722651 71.309268 49.0159595 1.690337508 -0.013262 189 28 SH1482 1482 Leu2 3' flank 33.509675 88.029243 60.769459 1.78368537 0.110197 189 29 SH5827 5827 snR35 snR35 321 335 29.009174 83.282746 56.14596 1.749318512 -0.010414 189 30 SH13873 13873 MT COB intronic 29.299153 110.456039 29.299153 82.156886 55.7280195 1.746073609 0.021954 189 31 SH7164 7164 snR63 3' 30.967085 96.303512 63.6352985 1.803698086 -0.13919 189 32 SH86 86 Ala2 tRNA + 3' flank 66 3' flank 28.025507 75.168011 51.596759 1.712622423 0.027227 189 33 SH12729 12729 MT COX1 Exon1 28.179932 104.589619 28.179932 77.409687 52.7948095 1.722591227 0.008159 189 34 SH17797 17797 YKL186C_11_93537_92746_INTRON_71_233 3' exon 29.97183 114.255114 29.97183 85.283284 57.627557 1.760630209 0.009886 189 35 SH8173 8173 snoRNA cluster 3; snR70 26.917906 106.04732 26.917906 80.129414 53.52366 1.728545803 -0.112744 189 36 SH9829 9829 RUF5-1 5' 29.058132 69.61075 49.334441 1.693150212 0.171229 189 37 SH5237 5237 snR30 snR30 36 50 63.189888 119.015976 91.102932 1.959532354 0.066356 189 38 SH16668 16668 YFR032C-A_6_223758_223245_INTRON_1_331 intron 32.14543 112.827612 32.14543 81.682182 56.913806 1.755217629 0.170332 189 39 SH20728 20728 YJL177W spliced 34.851782 99.388585 67.1201835 1.826853135 -0.102211 189 40 SH14118 14118 MT COB intronic 27.930666 106.707522 27.930666 79.776856 53.853761 1.731216039 -0.03874 189 41 SH2755 2755 Pro5 3' flank 32.759831 93.089564 62.9246975 1.798821136 -0.022162 189 42 SH9590 9590 RUF3 RUF3 336 355 27.575497 78.850416 53.2129565 1.726017389 -0.051158 189 43 SH13223 13223 MT COX1 COX1-ai4 31.536592 100.42515 31.536592 69.888558 50.712575 1.705115663 0.322535 189 44 SH9806 9806 RUF4 3' 33.121655 87.524351 60.323003 1.780482953 0.103507 189 45 SH17378 17378 YIL052C_9_257061_256224_INTRON_38_509 intron 30.633992 116.965685 30.633992 87.331693 58.9828425 1.770725698 0.002416 189 46 SH17048 17048 YGR214W_7_920570_921783_INTRON_91_545 intron 30.995645 117.706035 30.995645 87.71039 59.3530175 1.773442803 0.01143 189 47 SH15702 15702 YBR220C_2_663261_662457_INTRON_302_722 intron 34.117484 116.250121 34.117484 83.132637 58.6250605 1.768083304 0.222792 189 48 SH7976 7976 snoRNA cluster 2 snR57 27.931548 100.803257 27.931548 73.871709 50.9016285 1.706731677 0.038069 189 49 SH4477 4477 U3b (snR17b) 5' 30.933914 79.805981 55.3699475 1.743274112 0.153322 189 50 SH9852 9852 RUF5-1 RUF5-1 66 83 31.209034 90.093156 60.651095 1.782838646 -0.020852 189 51 SH19975 19975 YBL087C spliced 28.493282 78.550686 53.521984 1.728532204 0.014345 189 52 SH2883 2883 Pro8 5' flank 29.939576 83.223386 56.581481 1.752674311 0.046268 189 53 SH13663 13663 MT ATP6 ATP6 26.562344 101.33061 26.562344 75.768266 51.165305 1.708975567 -0.083051 189 54 SH4973 4973 snR9 3' 37.366448 90.960749 64.1635985 1.807288713 0.137272 189 55 SH11209 11209 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2931 2949 28.333838 73.177288 50.755563 1.705483649 0.074672 189 56 SH4318 4318 telomerase RNA telomerase 626 638 28.678953 74.803775 51.741364 1.713837873 0.075518 189 57 SH20771 20771 YKL002W spliced 31.387861 84.185967 57.786914 1.761829502 0.091705 189 58 SH9012 9012 snR17a / U3a U3a 346 362 29.309737 75.169865 52.239801 1.718001514 0.111622 189 59 SH16049 16049 YDL191W_4_117665_118518_INTRON_4_494 intron 29.214673 113.013324 29.214673 84.798651 57.006662 1.755925612 -0.015544 189 60 SH11951 11951 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6641 6654 31.130433 83.595235 57.362834 1.758630599 0.091576 189 61 SH9888 9888 RUF5-1 RUF5-1 246 264 28.542381 71.46653 50.0044555 1.699008703 0.111494 189 62 SH13916 13916 MT COB Cytbi3 26.402721 108.615413 26.402721 83.212692 54.8077065 1.738841629 -0.186958 189 63 SH14884 14884 MT tRNA Ala tRNA / 3' 28.961603 101.960748 28.961603 73.999145 51.480374 1.711641693 0.104824 189 64 SH1823 1823 Leu8 3' flank 28.952793 79.780385 54.366589 1.735332086 0.028936 189 65 SH8765 8765 LSR1 / U2 RNA U2 466 483 37.843938 83.550188 60.697063 1.783167677 0.320692 189 66 SH978 978 Gly1 3' flank 26.183542 86.700279 56.4419105 1.751601706 -0.243771 189 67 SH19289 19289 YPL175W_16_218629_220087_INTRON_18_117 exon/intron 27.803051 97.747406 27.803051 70.944355 49.373703 1.6934957 0.067989 189 68 SH9501 9501 RUF2 3' 27.781922 81.725417 54.7536695 1.73841323 -0.072962 189 69 SH7964 7964 snoRNA cluster 2 5' 29.900481 113.674733 29.900481 84.774252 57.3373665 1.758437742 0.015957 189 70 SH6054 6054 snR37 snR37 186 202 34.025637 90.462649 62.244143 1.794098492 0.06837 189 71 SH16819 16819 YGL178W_7_167356_170575_INTRON_4_643 intron 35.285038 126.509142 35.285038 92.224104 63.754571 1.804511328 0.060275 189 72 SH6580 6580 snR47 snR47 6 26 27.855342 62.828944 45.342143 1.656502042 0.188178 189 73 SH5644 5644 snR34 snR34 141 162 26.299006 66.890281 46.5946435 1.668335993 0.01735 189 74 SH9199 9199 snR7 U5 RNA 3' 26.464622 75.336887 50.9007545 1.70672422 -0.08467 189 75 SH10987 10987 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1821 1838 578.263318 579.883365 579.0733415 2.762733572 0.078197 189 76 SH597 597 Gln1 tRNA 26 41 30.161397 78.030181 54.095789 1.733163459 0.1282 189 77 SH20455 20455 YGL178W spliced 27.19738 69.048608 48.122994 1.682352639 0.051563 189 78 SH14757 14757 MT ORF11; tRNA Leu; tRNA Gln ORF11 28.83021 107.13626 28.83021 79.30605 54.06813 1.732941349 0.026912 189 79 SH13533 13533 MT COX1 intronic 33.337101 122.698813 33.337101 90.361712 61.8494065 1.791335537 0.053164 189 80 SH11329 11329 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3531 3544 2696.241888 2272.006544 2484.124216 3.395173308 -0.055695 189 81 SH11580 11580 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4786 4802 35.430494 97.622961 66.5267275 1.822996161 -0.051736 189 82 SH7833 7833 snoRNA cluster1 snR74 62.068304 190.000447 62.068304 128.932143 95.5002235 1.980004388 -0.102881 189 83 SH9113 9113 snR14 / U4 RNA 3' 31.129558 82.311974 56.720766 1.753742087 0.11547 189 84 SH13270 13270 MT COX1 intronic 28.98828 119.323991 28.98828 91.335711 60.1619955 1.779322233 -0.140838 189 85 SH11259 11259 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3181 3194 134.465257 178.629596 156.5474265 2.194645933 0.177555 189 86 SH14127 14127 MT COB Exon5 29.627276 111.11952 29.627276 82.492244 56.05976 1.748651234 0.038859 189 87 SH4670 4670 snR3 3' 27.241961 78.323109 52.782535 1.722490244 -0.067369 189 88 SH12048 12048 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7126 7139 33.807976 92.428809 63.1183925 1.80015593 0.019222 189 89 SH7792 7792 snoRNA cluster1 snR75 33.246644 130.922812 33.246644 98.676168 65.961406 1.819289904 -0.127903 189 90 SH3788 3788 RNaseP 5' flank 26.790193 68.269544 47.5298685 1.676966613 0.033401 189 91 SH8547 8547 snR19 / U1 RNA U1 231 247 39.594039 94.100678 66.8473585 1.825084251 0.116052 189 92 SH17022 17022 YGR148C_7_788173_787307_INTRON_1_392 intron 25.980032 93.52205 25.980032 68.542018 47.261025 1.674503136 -0.029558 189 93 SH19380 19380 YPR043W_16_654161_654842_INTRON_3_405 intron 29.835707 125.490321 29.835707 96.654614 63.2451605 1.801027299 -0.189834 189 94 SH4106 4106 SRP RNA SRP RNA 421 433 34.003597 99.995622 66.9996095 1.826072271 -0.135635 189 95 SH11245 11245 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3111 3129 3648.733254 3644.939345 3646.8363 3.561916269 -0.409826 189 96 SH12911 12911 MT COX1 COX1ai2 26.612092 110.003822 26.612092 84.39173 55.501911 1.744307937 -0.186162 189 97 SH11250 11250 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3136 3154 1386.858448 1673.469702 1530.164075 3.184738001 -0.44477 189 98 SH13451 13451 MT COX1 intronic 28.055715 102.25895 28.055715 75.203235 51.629475 1.712897709 0.028788 189 99 SH14181 14181 MT COB Exon6 28.075222 96.814763 28.075222 69.739541 48.9073815 1.689374411 0.103186 189 100 SH11920 11920 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6486 6504 65.423618 102.786981 84.1052995 1.924823362 0.380669 189 101 SH2131 2131 Met1 tRNA 41 56 2639.586403 2495.663884 2567.625144 3.40953162 -0.23185 189 102 SH61 61 Ala2 5' flank 28.507103 75.716132 52.1116175 1.716934554 0.052056 189 103 SH13298 13298 MT COX1 COX1-ai5a 28.718665 99.922286 28.718665 72.203621 50.461143 1.702957084 0.113505 189 104 SH7496 7496 snR71 3' 31.090337 87.162946 59.1266415 1.771783211 0.025199 190 2 SH753 753 Gln4 tRNA 36 50 79.342383 134.216491 106.779437 2.028487627 0.077311 190 3 SH19775 19775 Negative Control 31.619695 91.104489 61.362092 1.787900157 -0.020624 190 4 SH19481 19481 ADH1 33.819772 86.505964 60.162868 1.779328531 0.149529 190 5 SH19436 19436 YPR132W_16_794960_795762_INTRON_66_430 3' exon 28.710207 112.353106 28.710207 84.642899 56.676553 1.753403429 -0.046153 190 6 SH10620 10620 RUF8 3' 31.369909 80.752835 56.061372 1.748663722 0.155348 190 7 SH2082 2082 Lys4 tRNA 76 88 31.684224 87.66185 59.673037 1.775778141 0.041695 190 8 SH4508 4508 U3b (snR17b) U3b 96 113 31.217411 86.822034 59.0197225 1.770997163 0.03672 190 9 SH17419 17419 YIL111W_9_155219_155762_INTRON_2_89 exon/intron 26.999956 100.699397 26.999956 74.699441 50.8496985 1.706288382 -0.037949 190 10 SH14175 14175 MT COB intronic 25.103535 98.475131 25.103535 74.371596 49.7375655 1.696684524 -0.173979 190 11 SH18450 18450 YMR143W_13_551927_552902_INTRON_25_568 5' exon 37.878474 131.048458 37.878474 94.169984 66.024229 1.819703338 0.078089 190 12 SH9492 9492 RUF2 3' 26.392062 66.268883 46.3304725 1.665866729 0.033108 190 13 SH20660 20660 YIL052C spliced 38.469311 83.156771 60.813041 1.783996721 0.344286 190 14 SH19787 19787 Negative Control 30.419808 78.664898 54.542353 1.73673387 0.136163 190 15 SH15757 15757 YCR031C_3_178212_177492_INTRON_8_314 intron 26.941131 105.590061 26.941131 79.64893 53.2950305 1.726686715 -0.105097 190 16 SH3696 3696 Val3 5' flank 27.490261 71.868212 49.6792365 1.696174913 0.033785 190 17 SH15503 15503 YBR048W_2_332790_333771_INTRON_46_556 5' exon 27.881035 112.986514 27.881035 86.105479 56.993257 1.755823476 -0.118523 190 18 SH13870 13870 MT COB intronic 26.237155 101.715892 26.237155 76.478737 51.357946 1.710607646 -0.115729 190 19 SH9017 9017 snR17a / U3a U3a 371 388 27.121137 73.869626 50.4953815 1.703251658 -0.018606 190 20 SH3561 3561 Tyr2 tRNA 76 88 62.318926 161.777933 112.0484295 2.049405774 -0.520216 190 21 SH13947 13947 MT COB Cytbi3 27.46393 88.186119 27.46393 61.722189 44.5930595 1.64926727 0.179466 190 22 SH10765 10765 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 711 728 40.927795 115.064218 77.9960065 1.892072367 -0.267573 190 23 SH8115 8115 snoRNA cluster 3; 5' 29.219684 99.913799 29.219684 71.694115 50.4568995 1.70292056 0.153224 190 24 SH2549 2549 Pro2 5' flank 29.572782 85.151291 57.3620365 1.758624562 -0.005658 190 25 SH6172 6172 snR40 5' 27.468404 77.160282 52.314343 1.718620776 -0.036796 190 26 SH8589 8589 snR19 / U1 RNA U1 441 458 29.600746 85.779132 57.689939 1.76110008 -0.015757 190 27 SH3688 3688 Val3 5' flank 29.09453 90.065276 59.579903 1.775099792 -0.114273 190 28 SH6836 6836 snR52 86-92 + 3' 86 31.020574 74.231457 52.6260155 1.721200489 0.231091 190 29 SH11383 11383 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3801 3819 29464.37172 21309.56684 25386.96928 4.404610858 -0.479844 190 30 SH11363 11363 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3701 3716 33.905639 101.185081 67.54536 1.829595521 -0.162113 190 31 SH15793 15793 YDL061C_4_341182_340627_INTRON_1_408 5' exon 29.717792 104.00824 29.717792 75.290448 52.50412 1.720193384 0.136068 190 32 SH14151 14151 MT COB intronic 32.528886 133.45738 32.528886 101.928494 67.22869 1.827554649 -0.212409 190 33 SH6381 6381 snR43 snR43 146 165 30.342535 74.118399 52.230467 1.717923909 0.190976 190 34 SH3484 3484 Tyr1 5' flank 27.628027 85.108231 56.368129 1.75103362 -0.124036 190 35 SH20701 20701 YJL001W spliced 31.642515 98.630271 65.136393 1.813823705 -0.169227 190 36 SH21633 21633 copy of SH7933 31.320784 89.937102 60.628943 1.782679997 -0.013386 190 37 SH20204 20204 YDR025W spliced 65.06836 122.212875 93.6406175 1.971464269 0.045276 190 38 SH4908 4908 snR9 5' 27.401971 75.715376 51.5586735 1.712301735 -0.022449 190 39 SH11668 11668 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5226 5239 29.926987 91.818141 60.872564 1.784421595 -0.106334 190 40 SH6273 6273 snR42 snR42 146 165 29.803984 72.525573 51.1647785 1.708971098 0.178985 190 41 SH7766 7766 snoRNA cluster1 snR76 31.917794 117.920488 31.917794 87.002694 59.460244 1.774226687 0.063201 190 42 SH9601 9601 RUF3 RUF3 391 407 60.713484 110.896799 85.8051415 1.933513312 0.16271 190 43 SH13108 13108 MT COX1 COX1ai3 28.895166 112.00934 28.895166 84.114174 56.50467 1.752084343 -0.02778 190 44 SH4628 4628 snR3 snR3 56 73 26.341632 74.312984 50.327308 1.701803701 -0.08051 190 45 SH4110 4110 SRP RNA SRP RNA 441 453 39.644983 100.323654 69.9843185 1.845000738 -0.014973 190 46 SH6859 6859 snR56 5' 28.2876 70.082344 49.184972 1.691832428 0.112994 190 47 SH16415 16415 YER056C-A_5_270183_269421_INTRON_38_434 intron 28.665997 101.694388 28.665997 74.028391 51.347194 1.710516715 0.085099 190 48 SH14930 14930 MT tRNA Asn 5' / tRNA 27.225159 103.085192 27.225159 76.860033 52.042596 1.716358952 -0.049652 190 49 SH6642 6642 snR48 snR48 36 52 30.539376 90.867748 60.703562 1.783214176 -0.063126 190 50 SH14607 14607 MT 21S rRNA Sce1 endonuc 28.730333 108.160313 28.730333 80.42998 54.5801565 1.737034777 0.006284 190 51 SH7786 7786 snoRNA cluster1 intergenic/snR75 26.134784 97.75932 26.134784 72.624536 49.37966 1.693548095 -0.073638 190 52 SH20055 20055 YBR220C spliced 27.547236 80.350364 53.9488 1.731981789 -0.071957 190 53 SH4194 4194 telomerase RNA telomerase 6 23 44.91025 101.222103 73.0661765 1.863716382 0.071988 190 54 SH21567 21567 copy of SH5227 30.66718 90.885692 60.776436 1.783735229 -0.057842 190 55 SH5661 5661 snR34 snR34 226 240 26.504365 80.619632 53.5619985 1.728856773 -0.148022 190 56 SH11850 11850 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6136 6152 58.447564 112.705458 85.576511 1.932354576 0.095289 190 57 SH7528 7528 snR79 5' 26.938316 77.443378 52.190847 1.717594345 -0.077179 190 58 SH10330 10330 RUF7 RUF7 261 278 27.00417 76.242075 51.6231225 1.71284427 -0.057263 190 59 SH3656 3656 Val2 tRNA 21 37 31.547902 84.516654 58.032278 1.763669619 0.092447 190 60 SH9582 9582 RUF3 RUF3 296 315 26.618564 82.849831 54.7341975 1.738258755 -0.167242 190 61 SH6521 6521 snR46 snR46 96 112 105.93859 249.460122 177.699356 2.249685854 -0.672307 190 62 SH13987 13987 MT COB intronic 34.939825 130.985213 34.939825 97.045388 65.9926065 1.819495282 -0.051606 190 63 SH13461 13461 MT COX1 intronic 26.116592 107.018987 26.116592 81.902395 54.0094935 1.732470104 -0.191597 190 64 SH17214 17214 YHR039C-A_8_187670_187164_INTRON_4_165 3' exon 32.892215 120.707362 32.892215 88.815147 60.853681 1.784286854 0.071555 190 65 SH3350 3350 Thr3 3' flank 35.206024 89.593694 62.399859 1.795183608 0.117119 190 66 SH8195 8195 snoRNA cluster 3; intergenic 28.528765 102.980009 28.528765 75.451244 51.9900045 1.715919855 0.056996 190 67 SH16791 16791 YGL103W_7_310965_311925_INTRON_50_560 intron 30.482936 117.708664 30.482936 88.225728 59.354332 1.773452422 -0.019956 190 68 SH8612 8612 snR19 / U1 RNA U1 556 572 29.521979 83.882656 56.7023175 1.753600809 0.015262 190 69 SH21446 21446 copy of SH84 39.128159 94.756824 66.9424915 1.825701872 0.091981 190 70 SH11521 11521 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4491 4511 527.590855 418.149425 472.87014 2.674741891 0.484744 190 71 SH14420 14420 MT 21S rRNA 21S rRNA3 24.776925 91.8427 24.776925 68.065775 46.42135 1.666717766 -0.112403 190 72 SH6807 6807 snR52 5' 27.887964 86.53002 57.208992 1.757464296 -0.122979 190 73 SH21174 21174 YNL312W spliced 33.002583 86.880366 59.9414745 1.777727422 0.110111 190 74 SH19190 19190 YPL079W_16_406631_407534_INTRON_12_432 3' exon 28.611072 113.515499 28.611072 85.904427 57.2577495 1.757834274 -0.067482 190 75 SH15744 15744 YCR028C-A_3_173432_172942_INTRON_243_325 3' exon 28.460684 119.965856 28.460684 92.505172 60.482928 1.781632807 -0.185104 190 76 SH20391 20391 YFL039C spliced 27.947235 80.666699 54.306967 1.734855548 -0.048728 190 77 SH21280 21280 YPL129W spliced 33.693034 94.233077 63.9630555 1.805929202 -0.022947 190 78 SH21634 21634 copy of SH8139 39.669935 91.229228 65.4495815 1.815906874 0.181548 190 79 SH16988 16988 YGR118W_7_726968_727725_INTRON_66_385 intron 29.287212 106.106713 29.287212 77.819501 53.5533565 1.728786696 0.07549 190 80 SH8225 8225 snoRNA cluster 3; snR51/3' 28.041561 113.087235 28.041561 86.045674 57.0436175 1.756207059 -0.10701 190 81 SH3523 3523 Tyr1 3' flank 26.48324 74.269565 50.3764025 1.70222715 -0.069624 190 82 SH114 114 Arg1 5' flank 29.004101 80.44145 54.7227755 1.738168116 0.02401 190 83 SH19631 19631 RNA14 2.2 29.115797 83.772519 56.444158 1.751618999 -0.009373 190 84 SH18842 18842 YNL312W_14_48286_49215_INTRON_8_115 5' exon 27.016484 107.077503 27.016484 81.061019 54.0387515 1.732705307 -0.11743 190 85 SH5836 5836 snR35 snR35 366 382 29.507842 84.39728 56.952561 1.755513258 0.005159 190 86 SH20454 20454 YGL137W spliced 29.515405 78.516245 54.015825 1.732521014 0.08119 190 87 SH10340 10340 RUF7 RUF7 311 328 29.290612 81.201798 55.246205 1.742302451 0.033112 190 88 SH8244 8244 snoRNA cluster4 5' 28.979861 105.288774 28.979861 77.308913 53.144387 1.725457402 0.062203 190 89 SH16245 16245 YDR381W_4_1236547_1237993_INTRON_286_1051 intron/exon 28.650354 98.280568 28.650354 70.630214 49.640284 1.695834258 0.130061 190 90 SH16521 16521 YER131W_5_423587_424307_INTRON_1_361 exon/intron 27.949455 119.358061 27.949455 92.408606 60.1790305 1.779445187 -0.207748 190 91 SH17868 17868 YLL050C_12_40413_39803_INTRON_15_193 intron 31.015752 108.358398 31.015752 78.342646 54.679199 1.737822144 0.176829 190 92 SH13181 13181 MT COX1 Exon4 42.437234 133.710709 42.437234 92.273475 67.3553545 1.828372126 0.213553 190 93 SH6151 6151 snR39B 96 + 3' 96 25.312847 58.096493 41.70467 1.620184689 0.088534 190 94 SH6590 6590 snR47 snR47 56 75 65.810599 128.353163 97.081881 1.987138182 -0.036236 190 95 SH11551 11551 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4641 4659 31.408635 87.019966 59.2143005 1.772426603 0.041371 190 96 SH10431 10431 RUF8 RUF8 81 97 32.303869 86.99042 59.6471445 1.775589657 0.079512 190 97 SH4561 4561 U3b (snR17b) U3b 361 378 30.097084 79.583657 54.8403705 1.73910038 0.104441 190 98 SH7538 7538 snR79 snR79 31 48 29.4359 80.429686 54.932793 1.739831681 0.052 190 99 SH7337 7337 snR68 5' 29.181077 80.510929 54.846003 1.739144983 0.034607 190 100 SH257 257 Arg3 3' flank 37.787477 93.506875 65.647176 1.817216048 0.090685 190 101 SH2573 2573 Pro2 101-103 + 3' flank 101 29.263842 78.78545 54.024646 1.73259193 0.061635 190 102 SH2691 2691 Pro4 3' flank 32.365041 87.432313 59.898677 1.77741723 0.074205 190 103 SH4146 4146 SRP RNA SRP RNA 621 633 308.020064 313.082584 310.551324 2.492133385 0.265585 190 104 SH17213 17213 YHR039C-A_8_187670_187164_INTRON_4_165 intron/exon 30.933659 117.282217 30.933659 87.348558 59.1411085 1.77188946 0.015146 191 2 SH11528 11528 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4526 4543 275.494575 217.585703 246.540139 2.391887637 0.718787 191 3 SH10984 10984 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1806 1826 85.292602 113.582724 99.437663 1.997550909 0.458895 191 4 SH17002 17002 YGR118W_7_726968_727725_INTRON_66_385 3' exon 55.61773 166.999283 55.61773 112.381553 83.9996415 1.924277433 0.053772 191 5 SH17785 17785 YKL180W_11_109271_110131_INTRON_310_615 3' exon 30.438505 107.172507 30.438505 77.734002 54.0862535 1.733086899 0.14924 191 6 SH16800 16800 YGL137W_7_249872_252741_INTRON_19_218 intron 31.922177 114.93468 31.922177 84.012503 57.96734 1.763183372 0.117488 191 7 SH2126 2126 Met1 tRNA 16 30 418.104583 498.326657 458.21562 2.66106989 -0.094445 191 8 SH10157 10157 RUF6 RUF6 631 653 26.663489 80.420347 53.541918 1.728693925 -0.134266 191 9 SH18301 18301 YML073C_13_124172_123227_INTRON_16_430 intron 37.544994 127.981925 37.544994 91.436931 64.4909625 1.809498859 0.130744 191 10 SH13519 13519 MT COX1 intronic 24.697395 86.800765 24.697395 63.10337 43.9003825 1.642468304 -0.041484 191 11 SH5823 5823 snR35 snR35 301 321 26.523821 63.891576 45.2076985 1.655212398 0.079258 191 12 SH3378 3378 Thr4 5' flank 25.957049 63.922163 44.939606 1.652629261 0.038397 191 13 SH17303 17303 YHR203C_8_505526_504472_INTRON_15_283 exon/intron 31.73487 109.272487 31.73487 78.537617 55.1362435 1.741437174 0.213859 191 14 SH16916 16916 YGL251C_7_31636_27921_INTRON_59_210 intron 25.828217 102.947145 25.828217 78.118928 51.9735725 1.71578257 -0.166344 191 15 SH11862 11862 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6196 6213 28.344984 61.682449 45.0137165 1.653344871 0.239408 191 16 SH20489 20489 YGL232W spliced 24.584833 73.106702 48.8457675 1.688826938 -0.197727 191 17 SH2850 2850 Pro7 tRNA-intron/exon 56 71 66.536416 196.366233 131.4513245 2.118764966 -0.79896 191 18 SH21034 21034 YMR125W spliced 50.594703 98.749044 74.6718735 1.873157048 0.224307 191 19 SH18699 18699 YNL130C_14_381156_379555_INTRON_30_470 intron 28.586655 105.349215 28.586655 77.76256 53.1746075 1.725704293 0.030605 191 20 SH19647 19647 SIR1 2.2 29.298806 86.225371 57.7620885 1.761642888 -0.037506 191 21 SH271 271 Arg4 5' flank 27.027237 83.189148 55.1081925 1.741216167 -0.142626 191 22 SH18363 18363 YMR079W_13_424988_426058_INTRON_10_165 5' exon 33.651618 117.473258 33.651618 84.82164 59.236629 1.772590336 0.173275 191 23 SH13995 13995 MT COB intronic 27.96092 98.337428 27.96092 71.376508 49.668714 1.696082916 0.073066 191 24 SH19389 19389 YPR043W_16_654161_654842_INTRON_3_405 intron 31.688564 120.036653 31.688564 89.348089 60.5183265 1.78188691 0.012404 191 25 SH15230 15230 MT COX3 cox3 27.199867 97.42295 27.199867 71.223083 49.211475 1.692066382 0.021987 191 26 SH18038 18038 YLR333C_12_796335_795573_INTRON_1_423 exon/intron 26.908926 106.491738 26.908926 80.582812 53.745869 1.730345089 -0.119022 191 27 SH11485 11485 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4311 4328 170.843232 202.426312 186.634772 2.270992561 0.252924 191 28 SH16822 16822 YGL178W_7_167356_170575_INTRON_4_643 intron 29.208839 107.137371 29.208839 78.928532 54.0686855 1.732945811 0.056273 191 29 SH16109 16109 YDR064W_4_579453_580447_INTRON_22_560 intron 28.481682 106.501575 28.481682 79.019893 53.7507875 1.730384831 0.007615 191 30 SH6173 6173 snR40 5' 26.89152 73.031097 49.9613085 1.698633804 -0.024025 191 31 SH19834 19834 Negative Control 31.977585 83.019554 57.4985695 1.75965704 0.138202 191 32 SH14163 14163 MT COB intronic 29.90612 97.196134 29.90612 68.290014 49.098067 1.691064394 0.245005 191 33 SH5955 5955 snR36 snR36 231 250 27.661702 89.948934 58.805318 1.769416603 -0.179865 191 34 SH16991 16991 YGR118W_7_726968_727725_INTRON_66_385 intron 32.144137 115.463337 32.144137 84.3192 58.2316685 1.765159234 0.121125 191 35 SH15888 15888 YDL082W_4_308423_309387_INTRON_5_369 intron 26.887743 103.152207 26.887743 77.264464 52.0761035 1.716638481 -0.078404 191 36 SH11400 11400 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3886 3901 40.607425 85.932647 63.270036 1.801198082 0.323839 191 37 SH13730 13730 MT COB Exon1 26.874544 98.628141 26.874544 72.753597 49.8140705 1.697352031 -0.021588 191 38 SH19115 19115 YPL031C_16_493033_492014_INTRON_18_119 5' exon 29.679552 112.058587 29.679552 83.379035 56.5292935 1.752273558 0.031475 191 39 SH7965 7965 snoRNA cluster 2 5' 27.260116 102.141159 27.260116 75.881043 51.5705795 1.712402012 -0.034542 191 40 SH21761 21761 copy of SH13393 141.40682 225.169389 183.2881045 2.26313428 -0.153704 191 41 SH6955 6955 snR58 3' 30.753441 67.357267 49.055354 1.690686414 0.312007 191 42 SH20141 20141 YDL108W spliced 1030.053852 1193.384838 1111.719345 3.045995163 -0.307691 191 43 SH1455 1455 Leu2 tRNA-intron 46 60 35.549584 89.521297 62.5354405 1.796126213 0.127061 191 44 SH13812 13812 MT COB Cytbi2 26.352247 101.300154 26.352247 75.947907 51.150077 1.708846292 -0.100616 191 45 SH313 313 Arg5 5' flank 28.386098 91.800452 60.093275 1.778825873 -0.176786 191 46 SH8055 8055 snoRNA cluster 2 intergenic 25.850337 107.846328 25.850337 82.995991 54.423164 1.735783787 -0.224185 191 47 SH1565 1565 Leu4 5' flank - tRNA12 12 48.748268 104.90786 76.828064 1.885519889 0.070518 191 48 SH20646 20646 YHR203C spliced 31.27661 92.034956 61.655783 1.789973817 -0.050945 191 49 SH1427 1427 Leu2 5' flank 30.172379 80.873174 55.5227765 1.744471176 0.093056 191 50 SH11708 11708 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5426 5441 300.212445 177.350285 238.781365 2.378000431 1.162016 191 51 SH11853 11853 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6151 6170 28.472795 83.871275 56.172035 1.749520158 -0.052629 191 52 SH7415 7415 snR69 5' 29.986032 82.381449 56.1837405 1.74961065 0.062883 191 53 SH12615 12615 MT_15S MT_15S 29.102805 103.570271 29.102805 75.467466 52.2851355 1.718378238 0.094316 191 54 SH17665 17665 YKL006C-A_11_430270_429836_INTRON_37_177 exon/intron 28.923352 115.861746 28.923352 87.938394 58.430873 1.766642375 -0.085201 191 55 SH2415 2415 Phe4 3' flank 31.558308 71.933227 51.7457675 1.713874833 0.294961 191 56 SH9142 9142 snR7 U5 RNA 5' 29.363453 64.172413 46.767933 1.669948176 0.269416 191 57 SH21420 21420 Trp1 spliced 40.822542 103.403649 72.1130955 1.858014138 -0.053055 191 58 SH7081 7081 snR63 5' 29.007298 73.093915 51.0506065 1.708000906 0.120118 191 59 SH10446 10446 RUF8 RUF8 156 174 28.99235 85.800466 57.396408 1.758884714 -0.043937 191 60 SH732 732 Gln4 5' flank 28.647805 76.320965 52.484385 1.720030113 0.053366 191 61 SH10617 10617 RUF8 3' 34.519676 87.496651 61.0081635 1.785387952 0.148386 191 62 SH8660 8660 LSR1 / U2 RNA 5' 25.150096 69.937378 47.543737 1.677093315 -0.111421 191 63 SH10483 10483 RUF8 RUF8 341 358 29.574819 84.732591 57.153705 1.757044389 0.00206 191 64 SH971 971 Gly1 3' flank 25.655795 83.431423 54.543609 1.736743871 -0.243658 191 65 SH12469 12469 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 1387.866042 2707.166139 1387.866042 1320.300097 1354.08307 3.131645308 -0.072591 191 66 SH7451 7451 snR69 3' 28.927187 85.6313 57.2792435 1.757997274 -0.043896 191 67 SH1420 1420 Leu1 3' flank 31.162856 98.022961 64.5929085 1.81018484 -0.16974 191 68 SH2874 2874 Pro7 3' flank 28.231624 70.819254 49.525439 1.694828334 0.099142 191 69 SH2975 2975 Ser1 3' flank 27.366359 64.287544 45.8269515 1.661120968 0.132049 191 70 SH21071 21071 YMR225C spliced 36.774533 90.965621 63.870077 1.80529744 0.123516 191 71 SH9995 9995 RUF5-1 3' 33.931282 86.067349 59.9993155 1.778146296 0.161798 191 72 SH9506 9506 RUF3 5' 64.058093 112.641467 88.34978 1.946205472 0.184084 191 73 SH3117 3117 Ser4 5' flank - tRNA7 7 30.269547 82.200009 56.234778 1.750004985 0.080079 191 74 SH16178 16178 YDR305C_4_1073479_1072737_INTRON_88_176 intron 28.191591 95.325206 28.191591 68.133615 48.162603 1.682709951 0.133507 191 75 SH4150 4150 SRP RNA SRP RNA 641 656 36.237046 107.954949 72.0959975 1.857911155 -0.240142 191 76 SH11989 11989 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S/3'ETS 6831 6853 30.481584 75.266335 52.8739595 1.723241834 0.184203 191 77 SH11096 11096 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2366 2379 212.9494 192.985789 202.9675945 2.307426705 0.600391 191 78 SH19756 19756 Negative Control 34.010008 86.953847 60.4819275 1.781625623 0.148309 191 79 SH1367 1367 Leu1 5' flank 29.929187 84.705739 57.317463 1.758286959 0.018492 191 80 SH8277 8277 snoRNA cluster4 snR67/intergenic 26.115767 92.874713 26.115767 67.758946 46.9373565 1.671518627 -0.008496 191 81 SH18158 18158 YLR426W_12_987057_988108_INTRON_81_151 intron 30.966541 120.504854 30.966541 90.538313 60.752427 1.783563632 -0.038917 191 82 SH13133 13133 MT COX1 COX1ai3 28.685783 116.179948 28.685783 88.494165 58.589974 1.767823305 -0.105986 191 83 SH19280 19280 YPL143W_16_282121_282969_INTRON_20_544 intron 28.757763 105.760715 28.757763 78.002952 53.3803575 1.727381478 0.038759 191 84 SH522 522 Cys1 5' flank 28.990326 81.762165 55.3762455 1.743323507 0.00681 191 85 SH18323 18323 YML085C_13_99400_97941_INTRON_26_141 intron/exon 31.412784 119.367634 31.412784 88.95485 60.183817 1.779479728 0.007528 191 86 SH16949 16949 YGR027C_7_534779_534126_INTRON_1_312 intron 29.026084 101.736224 29.026084 73.71014 51.368112 1.710693604 0.112933 191 87 SH20778 20778 YKL006C-A spliced 31.057673 91.826317 61.441995 1.788465309 -0.056836 191 88 SH18040 18040 YLR333C_12_796335_795573_INTRON_1_423 intron 33.154086 117.852455 33.154086 85.698369 59.4262275 1.773978161 0.137432 191 89 SH17743 17743 YKL157W_11_154993_158183_INTRON_282_664 5' exon 28.655191 112.844439 28.655191 85.189248 56.9222195 1.755281826 -0.056209 191 90 SH18762 18762 YNL162W_14_331319_332151_INTRON_5_516 intron/exon 30.597764 115.388127 30.597764 85.790363 58.1940635 1.764878684 0.028379 191 91 SH49 49 Ala1 3' flank 25.252066 65.891872 45.571969 1.658697793 -0.043912 191 92 SH9552 9552 RUF3 RUF3 146 160 38.678148 114.919601 76.7988745 1.885354855 -0.313477 191 93 SH2264 2264 Phe2 5' flank 27.241079 92.939205 60.090142 1.77880323 -0.250965 191 94 SH9676 9676 RUF4 RUF4 156 173 30.862268 77.43545 54.148859 1.73358931 0.179143 191 95 SH20518 20518 YGR034W spliced 34.188885 77.995744 56.0923145 1.74890336 0.324261 191 96 SH3719 3719 Val3 3' flank 55.005599 87.280976 71.1432875 1.85213393 0.546342 191 97 SH11330 11330 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3536 3552 28188.85728 15565.16698 21877.01213 4.339988008 -0.041656 191 98 SH4448 4448 telomerase RNA telomerase 1276 1288 118.115417 154.258552 136.1869845 2.134135604 0.274477 191 99 SH2829 2829 Pro7 5' flank 30.2755 89.539835 59.9076675 1.777482411 -0.051967 191 100 SH9514 9514 RUF3 5' 29.828489 85.890308 57.8593985 1.762373914 -0.007503 191 101 SH3712 3712 Val3 tRNA 41 53 53.078713 129.050937 91.064825 1.959350657 -0.258399 191 102 SH12506 12506 MT_tRNA Pro 3' 27.110953 98.066577 27.110953 71.955624 49.5332885 1.694897162 0.005862 191 103 SH4535 4535 U3b (snR17b) U3b 231 243 27.827208 89.621589 58.7243985 1.768818577 -0.166241 191 104 SH12715 12715 MT ORF 8 (hypothetical) ORF8 / 3' 28.09317 107.020389 28.09317 79.927219 54.0101945 1.732475741 -0.029695 192 2 SH16999 16999 YGR118W_7_726968_727725_INTRON_66_385 intron 28.873967 100.080739 28.873967 72.206772 50.5403695 1.703638413 0.123664 192 3 SH13371 13371 MT COX1 intronic 26.495916 93.885892 26.495916 68.389976 47.442946 1.676171649 0.010439 192 4 SH18220 18220 YML026C_13_223828_222987_INTRON_48_448 5' exon 28.535606 103.848402 28.535606 76.312796 52.424201 1.71953182 0.04608 192 5 SH12792 12792 MT COX1 COX1ai1 30.29316 115.905564 30.29316 86.612404 58.452782 1.766805186 0.000235 192 6 SH6453 6453 snR45 snR45 111 127 27.454153 71.577851 49.516002 1.694745572 0.035139 192 7 SH15734 15734 YBR230C_2_680008_679507_INTRON_12_108 intron/exon 37.813743 132.946666 37.813743 96.132923 66.973333 1.825901913 0.034129 192 8 SH2112 2112 Met1 5' flank 28.832483 82.800142 55.8163125 1.746761141 -0.016107 192 9 SH11312 11312 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3446 3463 40881.39115 16741.74971 28811.57043 4.459566931 0.328951 192 10 SH17891 17891 YLR048W_12_242233_243350_INTRON_91_449 intron 35.113167 135.879773 35.113167 101.766606 68.4398865 1.835309281 -0.144302 192 11 SH15387 15387 YBL040C_2_142830_142074_INTRON_23_119 5' exon 32.526033 132.793592 32.526033 101.267559 66.896796 1.825405318 -0.199273 192 12 SH17614 17614 YJR021C_10_469271_468247_INTRON_317_396 intron 40.352035 153.730065 40.352035 114.37803 77.3650325 1.888544712 -0.267583 192 13 SH15829 15829 YDL075W_4_322225_322987_INTRON_58_478 5' exon 33.618649 119.254291 33.618649 86.635642 60.1271455 1.779070586 0.139228 192 14 SH18218 18218 YML025C_13_225365_224406_INTRON_28_126 3' exon 31.470278 124.777269 31.470278 94.306991 62.8886345 1.798572165 -0.082872 192 15 SH21916 21916 copy of SH19999 39.918167 97.910821 68.914494 1.838310572 0.04089 192 16 SH7216 7216 snR64 3' 37.377496 126.843543 82.1105195 1.9143988 -0.543032 192 17 SH11740 11740 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5586 5603 97.668333 197.138156 147.4032445 2.168507043 -0.368597 192 18 SH17711 17711 YKL081W_11_282533_284097_INTRON_206_531 intron 24.982175 94.349408 24.982175 70.367233 47.674704 1.678288005 -0.130202 192 19 SH16914 16914 YGL251C_7_31636_27921_INTRON_59_210 exon/intron 27.872833 110.712905 27.872833 83.840072 55.8564525 1.74707335 -0.092383 192 20 SH13648 13648 MT ATP6 ATP6 26.343011 99.334316 26.343011 73.991305 50.167158 1.700419499 -0.076246 192 21 SH8603 8603 snR19 / U1 RNA U1 511 528 31.244747 79.468966 55.3568565 1.74317142 0.17479 192 22 SH19750 19750 Negative Control 31.300436 92.431726 61.866081 1.791452606 -0.05658 192 23 SH18622 18622 YNL096C_14_444312_443395_INTRON_145_489 intron 26.697957 93.118265 26.697957 67.420308 47.0591325 1.672643917 0.038771 192 24 SH19699 19699 Negative Control 31.101037 94.322937 62.711987 1.797350561 -0.096467 192 25 SH76 76 Ala2 16-28 16 28 28.573673 82.533196 55.5534345 1.744710914 -0.029863 192 26 SH12171 12171 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7741 7764 28.133893 77.587892 52.8608925 1.723134491 0.002776 192 27 SH6298 6298 snR42 snR42 271 285 34.083017 92.809541 63.446279 1.802406157 0.0178 192 28 SH9238 9238 snR6 / U6 RNA U6 61 73 31.598286 95.31048 63.454383 1.802461626 -0.100896 192 29 SH18464 18464 YMR143W_13_551927_552902_INTRON_25_568 intron 32.395177 118.626465 32.395177 87.231288 59.8132325 1.776797274 0.079012 192 30 SH15073 15073 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.677644 104.153258 26.677644 78.475614 52.576629 1.720792737 -0.108757 192 31 SH21299 21299 YPL198W spliced 29.452331 87.531096 58.4917135 1.767094344 -0.053762 192 32 SH16300 16300 YDR450W_4_1359912_1360787_INTRON_48_482 intron 29.550201 114.16159 29.550201 85.611389 57.580795 1.760277657 -0.015016 192 33 SH14395 14395 MT 21S rRNA 21S rRNA3 31.875286 110.430133 31.875286 79.554847 55.7150665 1.745972653 0.19986 192 34 SH8177 8177 snoRNA cluster 3; snR70 54.624731 200.944397 54.624731 147.319666 100.9721985 2.004201812 -0.482027 192 35 SH492 492 Asp2 tRNA 21 35 595.286923 1153.476669 874.381796 2.941701107 -0.97408 192 36 SH9480 9480 RUF2 RUF2 241 260 26.503769 79.491356 52.9975625 1.724255896 -0.133953 192 37 SH10486 10486 RUF8 RUF8 356 374 33.764477 93.341024 63.5527505 1.803134351 -0.001821 192 38 SH10030 10030 RUF6 5' - 12 -4 12 29.335348 82.698216 56.016782 1.748318156 0.017705 192 39 SH2787 2787 Pro6 tRNA-exon/intron 26 38 26.553569 78.979599 52.766584 1.72235898 -0.12395 192 40 SH12164 12164 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7706 7721 222.68002 269.58861 246.134315 2.391172165 0.102269 192 41 SH4161 4161 SRP RNA 3' 55.409534 125.554177 90.4818555 1.956561498 -0.164425 192 42 SH17428 17428 YIL133C_9_99416_98527_INTRON_32_321 exon/intron 27.87938 111.839488 27.87938 84.960108 56.419744 1.751431111 -0.105228 192 43 SH11341 11341 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3591 3608 34632.92836 20106.2409 27369.58463 4.437268206 -0.176888 192 44 SH10108 10108 RUF6 RUF6 386 405 30.731813 95.073032 62.9024225 1.798667371 -0.124705 192 45 SH7557 7557 snR79 3' 26.029337 73.07922 49.5542785 1.695081157 -0.087413 192 46 SH12424 12424 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.248503 119.354316 30.248503 90.105813 60.177158 1.779431673 -0.062909 192 47 SH10677 10677 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 271 287 58.703101 131.615967 95.159534 1.978452307 -0.197216 192 48 SH21207 21207 YOR096W spliced 28.974049 85.74984 57.3619445 1.758623865 -0.04387 192 49 SH6067 6067 snR37 snR37 251 268 27.735663 81.247981 54.491822 1.736331329 -0.070235 192 50 SH15692 15692 YBR220C_2_663261_662457_INTRON_302_722 5' exon 30.930387 121.455152 30.930387 91.524765 61.227576 1.786947066 -0.057244 192 51 SH14240 14240 MT tRNA Ser 5' 28.51021 100.356067 28.51021 72.845857 50.6780335 1.704819754 0.090954 192 52 SH17929 17929 YLR078C_12_286560_285737_INTRON_4_92 3' exon 32.690703 118.631564 32.690703 86.940861 59.815782 1.776815785 0.096325 192 53 SH10384 10384 RUF7 3' 32.003112 83.169455 57.5862835 1.760319051 0.136479 192 54 SH4960 4960 snR9 3' 31.850372 85.486392 58.668382 1.768404111 0.08757 192 55 SH19507 19507 ACT1 30.836969 91.562672 61.1998205 1.786750148 -0.061933 192 56 SH12695 12695 MT ORF 8 (hypothetical) 5' / ORF8 24.9093 104.004161 24.9093 80.094861 52.5020805 1.720176514 -0.260078 192 57 SH13400 13400 MT COX1 intronic 26.774839 108.263418 26.774839 82.488579 54.631709 1.737444786 -0.151837 192 58 SH18619 18619 YNL096C_14_444312_443395_INTRON_145_489 5' exon 33.268728 121.635309 33.268728 89.366581 61.3176545 1.787585534 0.073896 192 59 SH20751 20751 YJR021C spliced 33.276077 91.665121 62.470599 1.79567567 0.022516 192 60 SH3563 3563 Tyr2 86-89 + 3' flank 86 26.322014 75.76877 51.045392 1.707956543 -0.100561 192 61 SH593 593 Gln1 tRNA 6 23 32.118112 85.163855 58.6409835 1.768201245 0.104621 192 62 SH11421 11421 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3991 4009 48.734404 90.764325 69.7493645 1.843540255 0.363216 192 63 SH21406 21406 Ser3 spliced 504.095143 548.656039 526.375591 2.721295742 -0.009704 192 64 SH4171 4171 SRP RNA 3' 38.611061 89.407362 64.0092115 1.806242477 0.200256 192 65 SH7436 7436 snR69 snR69 81 98 28.51502 75.220036 51.867528 1.71489555 0.059161 192 66 SH9495 9495 RUF2 3' 26.920382 79.775819 53.3481005 1.727118961 -0.108143 192 67 SH9384 9384 RUF1 RUF1 496 513 31.605042 98.742033 65.1735375 1.814071294 -0.172539 192 68 SH6395 6395 snR43 3' 26.509368 70.916528 48.712948 1.687644413 -0.023394 192 69 SH10057 10057 RUF6 RUF6 131 150 26.86117 92.136593 59.4988815 1.774508802 -0.256518 192 70 SH18408 18408 YMR125W_13_517538_520445_INTRON_26_347 intron 27.594084 100.13455 27.594084 73.540466 50.567275 1.703869551 0.018973 192 71 SH9360 9360 RUF1 RUF1 376 392 25.585686 69.187865 47.3867755 1.675657158 -0.068013 192 72 SH18689 18689 YNL112W_14_413636_416278_INTRON_1274_2275 intron 58.405816 172.935899 58.405816 115.530083 86.9679495 1.939359231 0.046677 192 73 SH7597 7597 snR189 snR189 56 68 36.958728 94.94998 65.954354 1.819243471 0.040735 192 74 SH16004 16004 YDL137W_4_216158_217074_INTRON_1_332 intron 32.472679 121.940022 32.472679 90.467343 61.470011 1.788663291 0.02586 192 75 SH8764 8764 LSR1 / U2 RNA U2 461 480 28.321724 76.84174 52.581732 1.720834887 0.024988 192 76 SH3213 3213 Thr1 5' flank 26.405647 77.435707 51.920677 1.715340347 -0.115334 192 77 SH5098 5098 snR11 snR11 91 112 26.355722 67.24523 46.800476 1.67025027 0.01642 192 78 SH2225 2225 Phe1 tRNA 1 13 30.494869 87.656586 59.0757275 1.771409079 -0.009421 192 79 SH8822 8822 LSR1 / U2 RNA U2 751 765 28.142359 81.532624 54.8374915 1.73907758 -0.046309 192 80 SH21029 21029 YMR116C spliced 32.727494 92.086278 62.406886 1.795232513 -0.001001 192 81 SH10913 10913 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1451 1464 277.138539 309.766091 293.452315 2.46753754 0.149489 192 82 SH20540 20540 YGR183C spliced 27.874967 70.772154 49.3235605 1.693054419 0.075296 192 83 SH20349 20349 YER102W spliced 39.151794 101.937935 70.5448645 1.848465404 -0.058198 192 84 SH8413 8413 snoRNA cluster 5 snR190 28.126239 111.163001 28.126239 84.036762 56.0815005 1.748819625 -0.077677 192 85 SH6950 6950 snR58 3' 28.228918 73.837578 51.033248 1.70785321 0.058733 192 86 SH3632 3632 Val2 5' flank 30.419073 86.413822 58.4164475 1.766535143 0.009338 192 87 SH811 811 Glu1 71-72 + 3' flank 71 92 28.164767 70.931331 49.548049 1.695026558 0.093059 192 88 SH19055 19055 YOR234C_15_779404_778554_INTRON_20_546 intron 30.468696 112.527803 30.468696 83.059107 56.7639015 1.754072238 0.072772 192 89 SH9110 9110 snR14 / U4 RNA 3' 28.584487 77.389695 52.987091 1.724170077 0.035275 192 90 SH19898 19898 snR17A spliced 28.740395 82.531881 55.636138 1.745356976 -0.018886 192 91 SH19974 19974 YBL087C spliced 25.847639 68.464427 47.156033 1.673537263 -0.03831 192 92 SH13670 13670 MT ATP6 ATP6 26.583566 98.018202 26.583566 72.434636 49.509101 1.69468504 -0.038337 192 93 SH5420 5420 snR31 snR31 166 178 32.343096 69.250203 50.7966495 1.705835068 0.379301 192 94 SH16186 16186 YDR367W_4_1212837_1213603_INTRON_31_131 intron 29.776689 119.86221 29.776689 91.085521 60.431105 1.781260536 -0.100679 192 95 SH15588 15588 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.264789 110.968415 29.264789 82.703626 55.9842075 1.748065535 0.013102 192 96 SH8739 8739 LSR1 / U2 RNA U2 336 352 30.166829 88.64485 59.4058395 1.773829138 -0.04124 192 97 SH15489 15489 YBL092W_2_45639_46364_INTRON_1_333 intron 28.628451 111.27899 28.628451 83.650539 56.139495 1.749268502 -0.039718 192 98 SH18355 18355 YMR033W_13_337787_339276_INTRON_31_116 5' exon 32.794285 112.609938 32.794285 80.815653 56.804969 1.754386327 0.213577 192 99 SH11774 11774 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5756 5773 466.108571 436.207058 451.1578145 2.654328484 0.258473 192 100 SH2458 2458 Phe5 tRNA 61 75 1107.252126 1147.241553 1127.24684 3.052019026 -0.150627 192 101 SH11518 11518 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4476 4494 38.094034 88.105527 63.0997805 1.800027849 0.218519 192 102 SH5605 5605 snR34 5' 26.492555 81.352412 53.9224835 1.731769886 -0.157921 192 103 SH3602 3602 Val1 tRNA 6 18 33.909135 89.792748 61.8509415 1.791346315 0.080532 192 104 SH4665 4665 snR3 3' 27.408163 76.807853 52.108008 1.716904471 -0.036349 193 2 SH18873 18873 YNR053C_14_723108_721117_INTRON_811_1341 intron 33.342005 122.541487 33.342005 90.199482 61.7707435 1.790782829 0.056938 193 3 SH810 810 Glu1 66-72 + 3' flank 66 85 28.5115 70.257469 49.3844845 1.693590525 0.125782 193 4 SH3356 3356 Thr3 3' flank 32.818999 81.626024 57.2225115 1.757566915 0.199151 193 5 SH2267 2267 Phe2 5' flank 27.985598 85.785144 56.885371 1.755000595 -0.107738 193 6 SH15484 15484 YBL092W_2_45639_46364_INTRON_1_333 intron 27.643764 111.117145 27.643764 84.473381 56.0585725 1.748642035 -0.115467 193 7 SH9662 9662 RUF4 RUF4 86 102 36.192375 92.151598 64.1719865 1.807345483 0.083573 193 8 SH10302 10302 RUF7 RUF7 121 138 29.448469 85.637465 57.542967 1.759992251 -0.020103 193 9 SH11912 11912 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6446 6467 68.42134 104.933971 86.6776555 1.937907156 0.383648 193 10 SH10968 10968 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1726 1743 408.306974 334.752082 371.529528 2.569993336 0.515679 193 11 SH7770 7770 snoRNA cluster1 snR76/intergenic 26.529596 109.522214 26.529596 83.992618 55.261107 1.742419581 -0.187266 193 12 SH4533 4533 U3b (snR17b) U3b 221 237 30.36367 82.332253 56.3479615 1.750878209 0.081748 193 13 SH3534 3534 Tyr2 5' flank 25.733533 75.719895 50.726714 1.70523673 -0.143486 193 14 SH15837 15837 YDL075W_4_322225_322987_INTRON_58_478 intron 27.38731 117.69692 27.38731 91.30961 59.34846 1.773409454 -0.216434 193 15 SH16357 16357 YDR500C_4_1450856_1450201_INTRON_8_396 intron 29.339069 142.931846 29.339069 114.592777 71.965923 1.8571269 -0.538441 193 16 SH3461 3461 Trp1 3' flank 30.854465 81.527367 56.190916 1.749666112 0.118406 193 17 SH10952 10952 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1646 1664 13704.66892 8452.104397 11078.38666 4.044476519 -0.01781 193 18 SH2653 2653 Pro4 5' flank 29.306146 78.185251 53.7456985 1.730343712 0.072013 193 19 SH4848 4848 snR8 snR8 21 37 41.980682 99.750454 70.865568 1.850435272 0.043944 193 20 SH10653 10653 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 151 168 32.53534 92.421017 62.4781785 1.79572836 -0.013402 193 21 SH9356 9356 RUF1 RUF1 356 378 26.416917 76.677654 51.5472855 1.7122058 -0.105072 193 22 SH12202 12202 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7896 7913 31.188971 84.98318 58.0860755 1.764072035 0.068617 193 23 SH9666 9666 RUF4 RUF4 106 121 28.765336 83.655735 56.2105355 1.749817723 -0.030793 193 24 SH14452 14452 MT 21S rRNA 21S rRNA3 69.032368 197.027567 69.032368 128.995199 99.0137835 1.995695656 0.004181 193 25 SH20976 20976 YML034W spliced 43.616791 100.88141 72.2491005 1.858832445 0.053779 193 26 SH11530 11530 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4536 4555 317.428452 358.64648 338.037466 2.528964837 0.084061 193 27 SH14942 14942 MT tRNA Met 5' 26.995972 92.613746 26.995972 66.617774 46.806873 1.670309628 0.07164 193 28 SH21421 21421 Trp1 spliced 49.100075 112.356503 80.728289 1.907025748 -0.059717 193 29 SH15507 15507 YBR048W_2_332790_333771_INTRON_46_556 intron 32.173258 133.116584 32.173258 101.943326 67.058292 1.826452488 -0.2221 193 30 SH4401 4401 telomerase RNA telomerase 1041 1057 26.348997 74.780017 50.564507 1.703845777 -0.085983 193 31 SH3051 3051 Ser3 5' flank 28.864465 87.937532 58.4009985 1.766420272 -0.087913 193 32 SH19203 19203 YPL081W_16_404945_406039_INTRON_8_508 intron 26.505681 108.187307 26.505681 82.681626 54.5936535 1.737142159 -0.173214 193 33 SH20190 20190 YDL219W spliced 26.413365 77.354492 51.8839285 1.715032852 -0.113764 193 34 SH708 708 Gln3 71-72 + 3' flank 71 3' flank 26.31167 74.665178 50.488424 1.703191814 -0.087239 193 35 SH6683 6683 snR49 5' 26.306303 71.001017 48.65366 1.687115516 -0.039346 193 36 SH19038 19038 YOR234C_15_779404_778554_INTRON_20_546 intron 35.773263 118.065741 35.773263 83.292478 59.5328705 1.774756823 0.27887 193 37 SH15970 15970 YDL130W_4_229906_230527_INTRON_115_415 3' exon 75.044509 205.969784 75.044509 131.925275 103.484892 2.014876951 0.049487 193 38 SH4018 4018 SRP RNA 5' 26.70848 70.439316 48.573898 1.686402957 -0.002505 193 39 SH44 44 Ala1 3' flank 32.775811 98.03233 65.4040705 1.815604778 -0.126802 193 40 SH16861 16861 YGL187C_7_150529_149708_INTRON_1_342 intron 40.774706 144.974723 40.774706 105.200017 72.9873615 1.863247664 -0.088994 193 41 SH15421 15421 YBL059W_2_110555_111205_INTRON_287_355 3' exon 45.425321 143.539142 45.425321 99.113821 72.269571 1.858955477 0.124454 193 42 SH13159 13159 MT COX1 intronic 28.128565 106.25288 28.128565 79.124315 53.62644 1.729378967 -0.017214 193 43 SH10672 10672 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 246 263 30.708076 82.364859 56.5364675 1.75232867 0.096231 193 44 SH4031 4031 SRP RNA SRP RNA 46 66 28.124101 70.033598 49.0788495 1.690894373 0.102498 193 45 SH11418 11418 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3976 3989 36.771637 84.754168 60.7629025 1.783638511 0.26707 193 46 SH3756 3756 Val4 tRNA 6 21 175.183837 329.962045 252.572941 2.402386821 -0.527892 193 47 SH1442 1442 Leu2 5' flank 30.839969 92.65453 61.7472495 1.790617617 -0.080141 193 48 SH18549 18549 YMR230W_13_732413_733140_INTRON_53_462 intron 29.353103 114.855152 29.353103 86.502049 57.927576 1.762885356 -0.039984 193 49 SH2621 2621 Pro3 tRNA-intron/exon 56 71 62.701991 187.140334 124.9211625 2.096636017 -0.777894 193 50 SH20103 20103 YDL061C spliced 31.027222 86.468913 58.7480675 1.768993585 0.034846 193 51 SH20788 20788 YKL081W spliced 28.686 74.984301 51.8351505 1.714624364 0.073567 193 52 SH19024 19024 YOR182C_15_678792_678190_INTRON_4_414 intron 30.596108 119.619509 30.596108 90.023401 60.3097545 1.780387561 -0.046201 193 53 SH5434 5434 snR31 3' 27.580552 80.018891 53.7997215 1.730780028 -0.065541 193 54 SH7609 7609 snR189 snR189 116 133 27.29259 79.916639 53.6046145 1.729202177 -0.084036 193 55 SH18276 18276 YML056C_13_164176_162194_INTRON_461_868 intron 27.230481 100.026355 27.230481 73.795874 50.5131775 1.703404688 -0.009899 193 56 SH10985 10985 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1811 1828 2022.166567 1779.265033 1900.7158 3.278917185 -0.045651 193 57 SH5645 5645 snR34 snR34 146 165 28.9191 70.782189 49.8506445 1.697670778 0.145978 193 58 SH5034 5034 snR10 snR10 201 213 33.098556 84.979262 59.038909 1.771138323 0.148224 193 59 SH3244 3244 Thr1 3' flank 26.417346 81.792311 54.1048285 1.733236025 -0.168677 193 60 SH18601 18601 YNL069C_14_494998_493953_INTRON_29_477 intron 26.534044 107.10849 26.534044 81.574446 54.054245 1.732829806 -0.157701 193 61 SH6653 6653 snR48 snR48 91 110 26.130142 82.434186 54.282164 1.734657153 -0.1971 193 62 SH4454 4454 telomerase RNA 3' 31.901781 94.251479 63.07663 1.799868482 -0.070036 193 63 SH5274 5274 snR30 snR30 221 237 35.89226 80.899405 58.3958325 1.766381854 0.332791 193 64 SH20221 20221 YDR092W spliced 27.611631 88.075492 57.8435615 1.762255025 -0.159467 193 65 SH18682 18682 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.283271 97.760566 28.283271 70.477295 49.380283 1.693553575 0.107306 193 66 SH15476 15476 YBL091C-A_2_46858_46559_INTRON_35_122 intron 26.529411 98.36287 26.529411 72.833459 49.681435 1.696194132 -0.047533 193 67 SH3690 3690 Val3 5' flank 26.661875 75.907448 51.2846615 1.709987493 -0.077609 193 68 SH9931 9931 RUF5-1 RUF5-1 461 477 26.284344 71.107427 48.6958855 1.687492268 -0.042391 193 69 SH8215 8215 snoRNA cluster 3; snR51 41.423157 133.813967 41.423157 93.39081 67.4069835 1.828704893 0.168828 193 70 SH11552 11552 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4646 4664 32.168632 86.184354 59.176493 1.772149224 0.088298 193 71 SH20049 20049 YBR191W spliced 30.401025 93.328472 61.8647485 1.791443252 -0.110539 193 72 SH17363 17363 YIL052C_9_257061_256224_INTRON_38_509 intron 28.407558 108.584004 28.407558 81.176446 54.792002 1.738717169 -0.024254 193 73 SH17815 17815 YKR057W_11_551293_551878_INTRON_25_346 intron 28.268835 107.643924 28.268835 80.375089 54.321962 1.734975447 -0.023544 193 74 SH14702 14702 MT tRNA thr2 tRNA 28.041981 103.208702 28.041981 76.166721 52.104351 1.716873991 0.015119 193 75 SH17193 17193 YHR021C_8_148660_147862_INTRON_4_553 intron 28.121418 100.31605 28.121418 73.194632 50.658025 1.704648254 0.059952 193 76 SH20667 20667 YIL069C spliced 28.57269 95.029762 61.801226 1.790997091 -0.2215 193 77 SH5218 5218 snR30 5' 28.780979 75.60287 52.1919245 1.717603311 0.07157 193 78 SH13529 13529 MT COX1 intronic 26.166337 93.923377 26.166337 68.75704 47.4616885 1.676343185 -0.018803 193 79 SH10034 10034 RUF6 RUF6 16 33 27.990218 78.04983 53.020024 1.72443992 -0.012814 193 80 SH6157 6157 snR39B 3' 27.822681 75.586813 51.704747 1.713530417 0.007978 193 81 SH12869 12869 MT COX1 COX1ai1 27.591511 100.831193 27.591511 74.239682 50.9155965 1.706850836 0.009713 193 82 SH16973 16973 YGR034W_7_555923_556666_INTRON_20_496 intron 38.375285 138.533127 38.375285 101.157842 69.7665635 1.843647331 -0.058835 193 83 SH1627 1627 Leu5 tRNA 1 13 133.361411 234.092572 183.7269915 2.264172964 -0.289521 193 84 SH12698 12698 MT ORF 8 (hypothetical) ORF8 27.139857 113.698479 27.139857 87.558622 57.3492395 1.758527663 -0.186045 193 85 SH19618 19618 RNA14 1.1 27.035873 69.821458 48.4286655 1.685102502 0.029412 193 86 SH4460 4460 telomerase RNA 3' 27.15612 86.368413 56.7622665 1.754059728 -0.171213 193 87 SH13226 13226 MT COX1 COX1-ai4 27.538034 110.027937 27.538034 83.489903 55.5139685 1.744402275 -0.110962 193 88 SH259 259 Arg3 3' flank 39.142692 89.570505 64.3565985 1.808593082 0.208243 193 89 SH16960 16960 YGR029W_7_543547_544199_INTRON_87_169 3' exon 32.977972 125.689852 32.977972 93.71188 63.344926 1.801711833 -0.030019 193 90 SH15135 15135 MT tRNA Phe 3' 26.537935 93.952831 26.537935 68.414896 47.4764155 1.676477922 0.013141 193 91 SH666 666 Gln2 3' flank 30.493517 147.508256 89.0008865 1.949394332 -1.023627 193 92 SH4421 4421 telomerase RNA telomerase 1141 1160 26.841134 84.408264 55.624699 1.745267674 -0.170211 193 93 SH3757 3757 Val4 tRNA 11 26 44.071754 119.265861 81.6688075 1.912056214 -0.275107 193 94 SH12102 12102 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7396 7411 84.755777 148.598334 116.6770555 2.066985461 -0.035193 193 95 SH16073 16073 YDR025W_4_491510_492319_INTRON_46_384 5' exon 34.066875 133.470608 34.066875 100.403733 67.235304 1.827597373 -0.142316 193 96 SH20814 20814 YKL190W spliced 26.59394 79.332349 52.9631445 1.723973762 -0.125549 193 97 SH16095 16095 YDR059C_4_569765_569229_INTRON_48_137 5' exon 31.2931 117.884564 31.2931 87.591464 59.442282 1.774095474 0.026313 193 98 SH5796 5796 snR35 snR35 166 188 27.719747 64.501004 46.1103755 1.663798659 0.153577 193 99 SH7367 7367 snR68 snR68 56 75 25.762885 71.33854 48.5507125 1.686195608 -0.084095 193 100 SH15747 15747 YCR031C_3_178212_177492_INTRON_8_314 5' exon 46.13632 142.939016 46.13632 97.802696 71.969508 1.857148534 0.164776 193 101 SH8113 8113 snoRNA cluster 3; 5' 27.611601 103.792353 27.611601 77.180752 52.3961765 1.719299596 -0.027264 193 102 SH11235 11235 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3061 3077 10364.84659 13150.2229 11757.53475 4.070316271 -1.081046 193 103 SH21246 21246 YPL031C spliced 31.33457 83.161432 57.248001 1.757760326 0.108373 193 104 SH17073 17073 YGR225W_7_945138_946919_INTRON_1184_1276 exon/intron 33.797142 124.302902 33.797142 91.50576 62.651451 1.796931134 0.03933 194 2 SH5264 5264 snR30 snR30 171 185 30.55458 98.066206 64.310393 1.808281164 -0.187485 194 3 SH3428 3428 Trp1 5' flank 25.994424 70.684058 48.339241 1.684299827 -0.058021 194 4 SH16270 16270 YDR447C_4_1355542_1354818_INTRON_4_317 intron 37.071125 138.431516 37.071125 102.360391 69.715758 1.843330954 -0.111657 194 5 SH1749 1749 Leu7 tRNA 41 55 94.174674 133.88408 114.029377 2.057016752 0.266892 194 6 SH12717 12717 MT ORF 8 (hypothetical) 3' 27.757826 99.507047 27.757826 72.749221 50.2535235 1.701166517 0.040747 194 7 SH15393 15393 YBL040C_2_142830_142074_INTRON_23_119 intron/exon 28.973369 105.968364 28.973369 77.994995 53.484182 1.728225358 0.052935 194 8 SH9263 9263 snR6 / U6 RNA 3' 25.740218 70.433736 48.086977 1.682027476 -0.073542 194 9 SH13326 13326 MT COX1 COX1-ai5a 27.681633 89.522718 27.681633 62.841085 45.261359 1.65572759 0.175967 194 10 SH11748 11748 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5626 5641 36.110789 76.764439 56.437614 1.751568645 0.422077 194 11 SH14228 14228 MT ATP9 ATP9/3 27.046091 105.848282 27.046091 79.802191 53.424141 1.727737548 -0.099696 194 12 SH19651 19651 SIR1 2.2 26.667128 69.142149 47.9046385 1.680377567 0.012347 194 13 SH11696 11696 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5366 5382 20086.97185 7431.160753 13759.0663 4.138588963 0.684361 194 14 SH13063 13063 MT COX1 intronic 35.870805 115.345752 35.870805 80.474947 58.172876 1.764720535 0.340128 194 15 SH19849 19849 Negative Control 27.582434 78.614042 53.098238 1.72508011 -0.047678 194 16 SH1390 1390 Leu1 tRNA 21 35 28.158897 87.694971 57.926934 1.762880542 -0.118152 194 17 SH13310 13310 MT COX1 COX1-ai5a 26.989673 92.293471 26.989673 66.303798 46.6467355 1.668821256 0.075724 194 18 SH9231 9231 snR6 / U6 RNA U6 26 45 27.646344 69.215026 48.430685 1.685120612 0.080784 194 19 SH19812 19812 Negative Control 32.320725 91.453367 61.887046 1.791599753 0.002314 194 20 SH20774 20774 YKL006C-A spliced 32.645298 92.395122 62.52021 1.796020428 -0.00995 194 21 SH15093 15093 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " intronic 28.576629 119.738228 28.576629 92.161599 60.369114 1.780814802 -0.173906 194 22 SH16582 16582 YFL034C-A_6_64931_64242_INTRON_13_333 5' exon 31.010309 115.738541 31.010309 85.728232 58.3692705 1.766184266 0.047424 194 23 SH18226 18226 YML026C_13_223828_222987_INTRON_48_448 intron 28.510881 109.216162 28.510881 81.705281 55.108081 1.741215288 -0.023914 194 24 SH5304 5304 snR30 snR30 371 383 32.451833 87.725872 60.0888525 1.77879391 0.072604 194 25 SH14397 14397 MT 21S rRNA 21S rRNA3 27.52102 99.183968 27.52102 72.662948 50.091984 1.699768233 0.025386 194 26 SH16965 16965 YGR034W_7_555923_556666_INTRON_20_496 intron 24548.62966 42182.92735 24548.62966 17635.29769 21091.96368 4.324117015 -0.419453 194 27 SH5624 5624 snR34 snR34 41 60 27.410519 66.101658 46.7560885 1.669838172 0.108451 194 28 SH15509 15509 YBR048W_2_332790_333771_INTRON_46_556 intron 27.684774 98.471193 27.684774 71.786419 49.7355965 1.696667331 0.048457 194 29 SH20467 20467 YGL187C spliced 28.133817 79.186293 53.660055 1.729651113 -0.017646 194 30 SH7539 7539 snR79 snR79 36 52 30.630649 86.772553 58.701601 1.768649946 0.012206 194 31 SH11639 11639 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5081 5098 3153.836258 2630.739363 2892.287811 3.461241507 -0.083313 194 32 SH2488 2488 Pro1 5' flank 50.834405 108.209074 79.5217395 1.900485871 0.046218 194 33 SH8192 8192 snoRNA cluster 3; intergenic 25.798515 91.271178 25.798515 66.472663 46.135589 1.664036069 -0.012813 194 34 SH20379 20379 YFL034C-A spliced 48.437125 105.710157 77.073641 1.886905876 0.049622 194 35 SH12101 12101 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7391 7409 30.573044 82.384007 56.4785255 1.75188335 0.089973 194 36 SH10858 10858 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1176 1194 28.881418 92.632143 60.7567805 1.783594753 -0.167585 194 37 SH11441 11441 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4091 4104 2352.988801 1895.662681 2124.325741 3.327221112 0.052651 194 38 SH18401 18401 YMR125W_13_517538_520445_INTRON_26_347 intron 27.76121 104.921571 27.76121 78.160361 52.9607855 1.723954418 -0.02971 194 39 SH10402 10402 RUF8 5' 28.23995 81.516649 54.8782995 1.739400646 -0.039591 194 40 SH8491 8491 snR19 / U1 RNA 5' 27.846236 66.965003 47.4056195 1.675829826 0.126371 194 41 SH20620 20620 YHR097C spliced 26.006165 82.762927 54.384546 1.735475507 -0.210046 194 42 SH14670 14670 MT 21S rRNA 21S rRNA4 26.577367 96.060778 26.577367 70.483411 48.530389 1.686013772 -0.012582 194 43 SH2376 2376 Phe4 5' flank 28.675894 78.549723 53.6128085 1.729268558 0.026394 194 44 SH7553 7553 snR79 3' 27.866775 84.050913 55.958844 1.747868734 -0.095308 194 45 SH21525 21525 copy of SH3560 31.865713 88.865172 60.3654425 1.780788389 0.028249 194 46 SH14359 14359 MT ORF9 and ORF10 (hypothetical) ORF9 28.06758 107.771409 28.06758 80.703829 54.3857045 1.735484759 -0.041093 194 47 SH8893 8893 LSR1 / U2 RNA U2 1106 1122 28.994638 78.692314 53.843476 1.731133089 0.045406 194 48 SH11848 11848 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6126 6143 1536.339586 1489.906431 1513.123009 3.179874235 -0.127757 194 49 SH18431 18431 YMR142C_13_551206_550205_INTRON_5_406 intron 32.811174 120.384328 32.811174 88.573154 60.692164 1.783132623 0.072474 194 50 SH742 742 Gln4 5' flank 28.557009 82.268628 55.4128185 1.743610241 -0.027748 194 51 SH14214 14214 MT ATP9 ATP9 26.206157 102.503589 26.206157 77.297432 51.7517945 1.713925414 -0.128223 194 52 SH3536 3536 Tyr2 5' flank 27.959327 85.070364 56.5148455 1.752162545 -0.101131 194 53 SH3434 3434 Trp1 tRNA 1 13 128.115458 179.694741 153.9050995 2.18725301 0.110018 194 54 SH18969 18969 YOR096W_15_505793_506766_INTRON_145_545 intron 28.706161 104.636754 28.706161 76.930593 52.818377 1.722785052 0.049235 194 55 SH4891 4891 snR8 3' 28.610293 78.371529 53.490911 1.728279994 0.024352 194 56 SH9600 9600 RUF3 RUF3 386 405 31.045149 85.938986 58.4920675 1.767096972 0.045129 194 57 SH21193 21193 YOL120C spliced 33.358241 81.55806 57.4581505 1.759351643 0.222252 194 58 SH20258 20258 YDR397C spliced 28.661181 75.201966 51.9315735 1.715431482 0.069034 194 59 SH2914 2914 Pro8 tRNA 91 103 42.498165 92.827017 67.662591 1.830348624 0.202397 194 60 SH15791 15791 YDL029W_4_399336_400634_INTRON_23_145 3' exon 31.439764 109.508772 31.439764 79.069008 55.254386 1.742366757 0.190923 194 61 SH3227 3227 Thr1 5' flank - tRNA9 9 29.27858 86.598028 57.938304 1.762965778 -0.045102 194 62 SH14256 14256 MT VAR1 includes 5’ processing site 5' 26.554011 102.467426 26.554011 76.913415 51.733713 1.713773649 -0.09805 194 63 SH7716 7716 snoRNA cluster1 snR77 30.440354 112.387273 30.440354 82.946919 56.6936365 1.753534315 0.073617 194 64 SH15924 15924 YDL108W_4_267697_268698_INTRON_29_109 5' exon 30.148962 117.165339 30.148962 88.016377 59.0826695 1.77146011 -0.031026 194 65 SH7644 7644 snoRNA cluster1 5' 27.835373 103.890131 27.835373 77.054758 52.4450655 1.719704632 -0.01042 194 66 SH6624 6624 snR48 5' 34.437689 104.910237 69.673963 1.843070514 -0.223035 194 67 SH15817 15817 YDL061C_4_341182_340627_INTRON_1_408 3' exon 27.970988 102.941233 27.970988 75.970245 51.9706165 1.715757869 0.012929 194 68 SH18997 18997 YOR122C_15_552886_552297_INTRON_14_222 intron 30.037636 115.020859 30.037636 85.983223 58.0104295 1.763506081 0.000176 194 69 SH11058 11058 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2176 2193 18142.49222 15194.15594 16668.32408 4.221891936 -0.578944 194 70 SH15995 15995 YDL136W_4_217600_218367_INTRON_4_408 3' exon 69.641059 205.939112 69.641059 137.298053 103.469556 2.014812585 -0.101864 194 71 SH17069 17069 YGR214W_7_920570_921783_INTRON_91_545 3' exon 28.257902 109.289928 28.257902 82.032026 55.144964 1.741505858 -0.044703 194 72 SH18629 18629 YNL096C_14_444312_443395_INTRON_145_489 intron 30.877451 118.484936 30.877451 88.607485 59.742468 1.77628316 -0.009425 194 73 SH18350 18350 YML124C_13_23684_22049_INTRON_26_323 intron 28.453459 98.986125 28.453459 71.532666 49.9930625 1.698909742 0.104597 194 74 SH10520 10520 RUF8 RUF8 526 545 27.982531 80.838504 54.4105175 1.735682857 -0.04848 194 75 SH136 136 Arg1 56-68 56 68 48.079963 107.526236 77.8030995 1.890996899 0.009076 194 76 SH9962 9962 RUF5-1 RUF5-1 616 635 28.069353 78.214133 53.141743 1.725435795 -0.0096 194 77 SH11342 11342 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3596 3609 24009.23138 14470.9394 19240.08539 4.284206995 -0.136106 194 78 SH21042 21042 YMR133W spliced 30.2901 75.153349 52.7217245 1.721989607 0.173834 194 79 SH3492 3492 Tyr1 tRNA 1 13 50.102655 102.679446 76.3910505 1.883042482 0.137769 194 80 SH1610 1610 Leu5 5' flank 27.523909 91.267331 59.39562 1.77375442 -0.209059 194 81 SH8104 8104 snoRNA cluster 3; 5' 33.057194 127.027079 33.057194 94.969885 64.0135395 1.806271841 -0.055047 194 82 SH11183 11183 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2801 2814 29.640745 79.631828 54.6362865 1.737481174 0.075049 194 83 SH11858 11858 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6176 6194 6353.76996 4944.587371 5649.178666 3.75198531 -0.170826 194 84 SH6329 6329 snR42 3' 28.927868 77.161171 53.0445195 1.72464052 0.060735 194 85 SH18415 18415 YMR133W_13_536206_537608_INTRON_1243_1358 5' exon 50.007653 168.900604 50.007653 119.892951 84.950302 1.929164927 -0.17241 194 86 SH20874 20874 YLR185W spliced 47.00395 113.256539 80.1302445 1.903796468 -0.114579 194 87 SH3255 3255 Thr1 3' flank 29.461988 85.361838 57.411913 1.759002018 -0.014502 194 88 SH18524 18524 YMR225C_13_721402_720959_INTRON_59_205 intron 25.770851 92.707529 25.770851 67.936678 46.8537645 1.67074449 -0.036614 194 89 SH531 531 Cys1 5' flank 28.352533 72.247733 50.300133 1.701569133 0.088209 194 90 SH15441 15441 YBL072C_2_89435_88518_INTRON_1_308 3' exon 30.721371 122.050418 30.721371 92.329047 61.525209 1.789053098 -0.079854 194 91 SH1584 1584 Leu4 tRNA 91 108 25.860994 71.946474 48.903734 1.689342021 -0.084918 194 92 SH2797 2797 Pro6 tRNA 76 90 29.090879 75.684384 52.3876315 1.719228764 0.090671 194 93 SH10284 10284 RUF7 RUF7 31 45 36.295512 142.087186 89.191349 1.950322733 -0.797302 194 94 SH2326 2326 Phe3 5' flank 50.372363 126.304412 88.3383875 1.946149468 -0.266399 194 95 SH17116 17116 YHR010W_8_126513_127484_INTRON_32_592 exon/intron 28.495942 124.8165 28.495942 97.320558 62.90825 1.798707604 -0.261949 194 96 SH2726 2726 Pro5 tRNA 11 28 29.260812 91.283561 60.2721865 1.780116947 -0.12743 194 97 SH17196 17196 YHR021C_8_148660_147862_INTRON_4_553 intron 29.554221 108.409646 29.554221 79.855425 54.704823 1.738025617 0.066733 194 98 SH15805 15805 YDL061C_4_341182_340627_INTRON_1_408 intron 28.08554 97.085294 28.08554 69.999754 49.042647 1.690573903 0.10032 194 99 SH16028 16028 YDL191W_4_117665_118518_INTRON_4_494 5' exon 36.911994 129.815838 36.911994 93.903844 65.407919 1.815630332 0.062151 194 100 SH15526 15526 YBR048W_2_332790_333771_INTRON_46_556 intron 25.965704 99.483947 25.965704 74.518243 50.2419735 1.70106669 -0.110838 194 101 SH2678 2678 Pro4 tRNA-intron/exon 56 70 37.405693 99.552921 68.479307 1.835559357 -0.046902 194 102 SH17963 17963 YLR185W_12_522665_523290_INTRON_8_366 intron 27.291701 106.72487 27.291701 80.433169 53.862435 1.731285983 -0.090548 194 103 SH2502 2502 Pro1 tRNA 1 13 182.000101 282.006013 232.003057 2.365493707 -0.221477 194 104 SH13677 13677 MT ORF 5 (hypothetical) 5' 29.246287 105.428803 29.246287 77.182516 53.2144015 1.726029182 0.081084 195 2 SH6777 6777 snR50 snR50 61 78 32.988514 96.381918 64.685216 1.810805033 -0.086795 195 3 SH3905 3905 RNase MRP 5' 30.591539 83.00325 56.7973945 1.754328414 0.079198 195 4 SH2878 2878 Pro8 5' flank 28.175082 73.376122 50.775602 1.705655081 0.061247 195 5 SH2455 2455 Phe5 tRNA-intron/exon 46 60 32.24839 85.312571 58.7804805 1.769233132 0.10734 195 6 SH20647 20647 YIL004C spliced 32.063941 86.121282 59.0926115 1.771533183 0.085068 195 7 SH15366 15366 YBL027W_2_168385_169338_INTRON_3_386 intron 27.952312 91.846709 27.952312 64.894397 46.4233545 1.666736519 0.163832 195 8 SH11052 11052 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2146 2162 12259.28083 6675.655476 9467.468155 3.976233853 0.210127 195 9 SH3589 3589 Val1 5' flank 30.247647 79.815284 55.0314655 1.740611078 0.110934 195 10 SH13385 13385 MT COX1 Exon 5b 31.89548 149.052472 31.89548 118.156992 75.026236 1.875213159 -0.531396 195 11 SH1560 1560 Leu4 5' flank 28.217232 71.858088 50.03766 1.699296992 0.084186 195 12 SH16590 16590 YFL034C-A_6_64931_64242_INTRON_13_333 intron 28.795673 116.111259 28.795673 88.315586 58.5556295 1.767568654 -0.097743 195 13 SH21558 21558 copy of SH4784 32.379215 87.83313 60.1061725 1.778919073 0.067716 195 14 SH10905 10905 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1411 1430 8993.398514 4583.428677 6788.413596 3.831768295 0.401652 195 15 SH15129 15129 MT tRNA Phe tRNA 31.299341 135.708115 31.299341 105.408774 68.3540575 1.834764299 -0.313521 195 16 SH12393 12393 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 43.984928 129.944525 43.984928 86.959597 65.4722625 1.816057349 0.365366 195 17 SH12913 12913 MT COX1 COX1ai2 29.831772 113.973897 29.831772 85.142125 57.4869485 1.759569256 0.006179 195 18 SH7374 7374 snR68 snR68 91 108 28.463224 77.692389 53.0778065 1.724912967 0.023356 195 19 SH15840 15840 YDL075W_4_322225_322987_INTRON_58_478 intron 88.841874 213.883579 88.841874 126.041705 107.4417895 2.031173233 0.312444 195 20 SH7726 7726 snoRNA cluster1 intergenic 26.591751 109.029066 26.591751 83.437315 55.014533 1.740477431 -0.176215 195 21 SH955 955 Gly1 tRNA 26 40 37.950683 93.718593 65.834638 1.818454452 0.089566 195 22 SH14179 14179 MT COB Exon6 26.245093 97.704957 26.245093 72.459864 49.3524785 1.693308968 -0.063349 195 23 SH19546 19546 CBP1 2.2 25.761855 80.754702 53.2582785 1.726387124 -0.203236 195 24 SH12002 12002 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6896 6913 27.536451 89.401616 58.4690335 1.766925915 -0.179566 195 25 SH9420 9420 RUF2 5' 25.259097 67.674143 46.46662 1.667141083 -0.070514 195 26 SH17687 17687 YKL006W_11_431544_432358_INTRON_130_527 intron 36.423556 127.767248 36.423556 92.343692 64.383624 1.808775418 0.084786 195 27 SH1683 1683 Leu6 5' flank 32.348513 97.372045 64.860279 1.811978812 -0.124294 195 28 SH14739 14739 MT tRNA cys; tRNA his 3' 26.062496 97.585701 26.062496 72.523205 49.2928505 1.692783933 -0.077632 195 29 SH3809 3809 RNaseP RNaseP 11 28 26.2265 75.950039 51.0882695 1.708321192 -0.109855 195 30 SH5152 5152 snR13 5' 384.810418 496.991166 440.900792 2.644340879 -0.196139 195 31 SH6710 6710 snR49 snR49 76 93 30.184957 87.12598 58.6554685 1.768308508 -0.0137 195 32 SH11267 11267 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3221 3239 28.030107 77.572695 52.801401 1.722645446 -0.003992 195 33 SH7048 7048 snR62 snR62 31 52 25.973872 75.505268 50.73957 1.705346782 -0.122859 195 34 SH2361 2361 Phe3 3' flank 32.636234 93.45696 63.046597 1.79966165 -0.033391 195 35 SH1976 1976 Lys2 3' flank 30.667771 84.39057 57.5291705 1.759888112 0.056887 195 36 SH8223 8223 snoRNA cluster 3; snR51 26.621997 103.988775 26.621997 78.366778 52.4943875 1.720112873 -0.111302 195 37 SH15844 15844 YDL075W_4_322225_322987_INTRON_58_478 intron 26.736219 104.23331 26.736219 78.497091 52.616655 1.721123235 -0.104898 195 38 SH14034 14034 MT COB Cytbi4 33.281725 116.649013 33.281725 84.367288 58.8245065 1.769558292 0.166791 195 39 SH16799 16799 YGL137W_7_249872_252741_INTRON_19_218 intron 30.703382 118.242409 30.703382 88.539027 59.6212045 1.775400746 -0.015796 195 40 SH1730 1730 Leu7 5' flank 37.658735 98.687861 68.173298 1.833614304 -0.023354 195 41 SH9761 9761 RUF4 RUF4 581 598 29.11522 82.017548 55.566384 1.744812136 0.011788 195 42 SH20488 20488 YGL232W spliced 27.164794 87.477544 57.321169 1.758315039 -0.183387 195 43 SH8632 8632 snR19 / U1 RNA 656-668 + 3' 656 26.676372 60.837623 43.7569975 1.641047514 0.139751 195 44 SH11514 11514 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4456 4469 40.187091 90.783212 65.4851515 1.816142837 0.202314 195 45 SH7206 7206 snR64 96-101 + 3' 96 45.455551 97.322802 71.3891765 1.853632372 0.162011 195 46 SH3351 3351 Thr3 3' flank 28.439449 78.281438 53.3604435 1.727219431 0.014219 195 47 SH15449 15449 YBL087C_2_60732_59815_INTRON_43_546 intron 27.081591 114.339936 27.081591 88.258345 57.669968 1.76094971 -0.198064 195 48 SH12595 12595 MT_15S MT_15S 32.267344 106.08578 32.267344 74.818436 53.54289 1.728701809 0.297451 195 49 SH7891 7891 snoRNA cluster1 intergenic 30.225503 108.264217 30.225503 79.038714 54.6321085 1.737447962 0.119343 195 50 SH10328 10328 RUF7 RUF7 251 268 28.142199 86.352214 57.2472065 1.757754299 -0.103821 195 51 SH16570 16570 YER133W_5_432491_433954_INTRON_178_702 intron/exon 27.978144 96.330573 27.978144 69.352429 48.6652865 1.687219284 0.101857 195 52 SH19697 19697 Negative Control 28.174251 76.209215 52.191733 1.717601718 0.023427 195 53 SH9546 9546 RUF3 RUF3 116 133 42.684866 100.537838 71.611352 1.854981873 0.042187 195 54 SH9187 9187 snR7 U5 RNA 206-215 + 3' 206 55.638291 105.661451 80.649871 1.906603677 0.174332 195 55 SH957 957 Gly1 tRNA 36 48 40.553885 103.311417 71.932651 1.856926066 -0.056854 195 56 SH1638 1638 Leu5 tRNA-intron/exon 56 73 28.114957 83.854008 55.9844825 1.748067668 -0.076253 195 57 SH14890 14890 MT tRNA Ile 5' 26.578841 98.831444 26.578841 73.252603 49.915722 1.698237357 -0.049454 195 58 SH18163 18163 YLR448W_12_1028848_1029762_INTRON_16_399 exon/intron 28.970408 119.997291 28.970408 92.026883 60.4986455 1.781745651 -0.153326 195 59 SH13578 13578 MT COX1 Exon 6 26.735223 104.556415 26.735223 78.821192 52.7782075 1.722454636 -0.109094 195 60 SH14299 14299 MT VAR1 includes 5’ processing site VAR1 27.165904 104.757004 27.165904 78.5911 52.878502 1.723279143 -0.076056 195 61 SH16830 16830 YGL178W_7_167356_170575_INTRON_4_643 intron 27.599089 108.430319 27.599089 81.83123 54.7151595 1.73810767 -0.086698 195 62 SH2352 2352 Phe3 86-91 + 3' flank 86 27.41664 72.871047 50.1438435 1.700217619 0.015324 195 63 SH15897 15897 YDL083C_4_307788_306925_INTRON_25_456 5' exon 31.351059 115.67811 31.351059 85.327051 58.339055 1.76595939 0.069307 195 64 SH12285 12285 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.625696 119.682893 30.625696 90.057197 60.3414465 1.780615717 -0.045488 195 65 SH6178 6178 snR40 5' 29.955975 84.502214 57.2290945 1.757616874 0.023411 195 66 SH4911 4911 snR9 5' 51.791359 91.769551 71.780455 1.856006207 0.39302 195 67 SH45 45 Ala1 3' flank 31.822601 91.519142 61.6708715 1.790080086 -0.019087 195 68 SH19291 19291 YPL175W_16_218629_220087_INTRON_18_117 intron 27.47996 106.146312 27.47996 79.666352 53.573156 1.728947231 -0.068004 195 69 SH19207 19207 YPL081W_16_404945_406039_INTRON_8_508 intron 38.489505 115.103531 38.489505 77.614026 58.0517655 1.763815432 0.484808 195 70 SH12091 12091 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7341 7354 136.275552 166.931329 151.6034405 2.180709057 0.308438 195 71 SH13743 13743 MT COB Exon1 28.111371 105.639518 28.111371 78.528147 53.319759 1.726888178 -0.010794 195 72 SH6304 6304 snR42 snR42 301 316 28.362606 74.708494 51.53555 1.712106915 0.055895 195 73 SH8720 8720 LSR1 / U2 RNA U2 241 259 26.068518 68.019339 47.0439285 1.672503581 -0.015664 195 74 SH21350 21350 YPR132W spliced 30.089601 90.031137 60.060369 1.778587996 -0.068676 195 75 SH21931 21931 copy of SH21371 89.224894 209.275208 149.250051 2.173914488 -0.576909 195 76 SH7516 7516 snR79 5' 29.961935 79.031492 54.4967135 1.736370312 0.102932 195 77 SH5590 5590 snR33 3' 28.062589 71.346281 49.704435 1.696395141 0.080462 195 78 SH21161 21161 YNL301C spliced 29.992359 85.154191 57.573275 1.760220935 0.013145 195 79 SH8644 8644 snR19 / U1 RNA 3' 25.172417 74.95741 50.0649135 1.69953347 -0.17623 195 80 SH8286 8286 snoRNA cluster4 intergenic 27.375436 96.629966 27.375436 70.25453 48.814983 1.688553142 0.047516 195 81 SH11426 11426 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4016 4029 747.656857 477.492693 612.574775 2.787159109 0.719601 195 82 SH14232 14232 MT ATP9 3' 30.383097 126.850965 30.383097 97.467868 63.9254825 1.805674015 -0.179867 195 83 SH9925 9925 RUF5-1 RUF5-1 431 452 28.04052 82.888674 55.464597 1.744015862 -0.069655 195 84 SH8571 8571 snR19 / U1 RNA U1 351 367 29.639873 72.160629 50.900251 1.706719924 0.173632 195 85 SH7821 7821 snoRNA cluster1 intergenic 28.951358 106.965663 28.951358 79.014305 53.9828315 1.73225566 0.038503 195 86 SH13314 13314 MT COX1 COX1-ai5a 24.705359 97.618821 24.705359 73.913462 49.3094105 1.692929811 -0.19884 195 87 SH10464 10464 RUF8 RUF8 246 267 25.310483 67.658847 46.484665 1.667309705 -0.066485 195 88 SH6876 6876 snR56 snR56 11 32 100.92711 203.575582 152.251346 2.182561141 -0.385097 195 89 SH14437 14437 MT 21S rRNA 21S rRNA3 60.546227 170.855851 60.546227 111.309624 85.9279255 1.934134327 0.152896 195 90 SH9140 9140 snR7 U5 RNA 5' 30.055407 76.049399 53.052403 1.72470506 0.147311 195 91 SH4817 4817 snR5 3' 28.622143 136.211685 82.416914 1.916016349 -0.913785 195 92 SH17260 17260 YHR101C_8_315970_314876_INTRON_111_197 intron 26.926312 112.385199 26.926312 86.458887 56.6925995 1.753526371 -0.188274 195 93 SH8696 8696 LSR1 / U2 RNA U2 121 140 31.553545 98.212649 64.883097 1.812131571 -0.163017 195 94 SH6741 6741 snR49 3' 26.244994 66.071389 46.1581915 1.664248785 0.025412 195 95 SH20105 20105 YDL061C spliced 28.822609 90.446854 59.6347315 1.775499268 -0.133381 195 96 SH8946 8946 snR17a / U3a U3a 16 34 31.615498 90.984418 61.299958 1.787460177 -0.018761 195 97 SH10078 10078 RUF6 RUF6 236 252 27.511197 82.278641 54.894919 1.739532149 -0.098167 195 98 SH3579 3579 Tyr2 3' flank 27.147695 80.290297 53.718996 1.730127887 -0.098736 195 99 SH13237 13237 MT COX1 COX1-ai4 26.586733 97.895086 26.586733 72.308353 49.447543 1.694144717 -0.036433 195 100 SH11157 11157 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2671 2684 390.733036 363.843044 377.28804 2.576673038 0.325375 195 101 SH14973 14973 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.579959 96.467223 25.579959 71.887264 48.7336115 1.687828597 -0.105171 195 102 SH21877 21877 copy of SH18252 28.417733 73.268622 50.8431775 1.706232684 0.079038 195 103 SH14483 14483 MT 21S rRNA 21S rRNA3 30.471348 116.414956 30.471348 86.943608 58.707478 1.768693424 0.002181 195 104 SH14651 14651 MT 21S rRNA 21S rRNA4 34.461206 133.706101 34.461206 100.244895 67.3530505 1.82835727 -0.129264 196 2 SH13849 13849 MT COB Cytbi2 26.317168 101.438296 26.317168 76.121128 51.219148 1.70943235 -0.105368 196 3 SH2788 2788 Pro6 tRNA-exon/intron 31 45 35.705377 74.795234 55.2503055 1.742334684 0.447167 196 4 SH8347 8347 snoRNA cluster4 snR53 26.382356 101.794563 26.382356 76.412207 51.3972815 1.710940149 -0.104266 196 5 SH1771 1771 Leu7 3' flank 25.88358 80.769785 53.3266825 1.726944567 -0.194541 196 6 SH1135 1135 Gly4 3' flank 43.181977 104.963429 74.072703 1.869658193 -0.035264 196 7 SH21763 21763 copy of SH13395 27.755258 76.284007 52.0196325 1.71616728 -0.005786 196 8 SH7865 7865 snoRNA cluster1 intergenic/snR73 28.144522 129.125844 28.144522 101.981322 65.062922 1.813333564 -0.350924 196 9 SH4214 4214 telomerase RNA telomerase 106 123 28.017226 94.13617 61.076698 1.78587555 -0.23316 196 10 SH8421 8421 snoRNA cluster 5 snR190 31.86253 126.657196 31.86253 95.794666 63.828598 1.805015305 -0.104068 196 11 SH3405 3405 Thr4 3' flank 26.981694 94.367438 60.674566 1.783006679 -0.287362 196 12 SH169 169 Arg2 5' flank 31.801301 88.130318 59.9658095 1.777903701 0.038386 196 13 SH5064 5064 snR11 5' 34.664264 94.966507 64.8153855 1.811678108 -0.014401 196 14 SH16351 16351 YDR500C_4_1450856_1450201_INTRON_8_396 intron 29.604839 120.199015 29.604839 91.594176 60.5995075 1.782469095 -0.117041 196 15 SH5568 5568 snR33 snR33 126 142 28.074183 108.778824 68.4265035 1.835224349 -0.470376 196 16 SH16895 16895 YGL226C-A_7_73156_72747_INTRON_22_170 intron 29.844419 158.044922 29.844419 129.200503 79.522461 1.900489812 -0.770381 196 17 SH19666 19666 SIR1 2.4 29.547922 67.497553 48.5227375 1.685945294 0.233 196 18 SH4938 4938 snR9 snR9 96 113 29.168864 70.992315 50.0805895 1.699669432 0.159695 196 19 SH18901 18901 YOL120C_15_94401_93394_INTRON_113_559 intron 27.245243 107.282819 27.245243 81.037576 54.1414095 1.733529558 -0.101253 196 20 SH15548 15548 YBR078W_2_393082_394818_INTRON_59_388 intron 27.200855 115.301998 27.200855 89.101143 58.150999 1.76455718 -0.1993 196 21 SH15238 15238 MT tRNA fMet 5' 29.04059 98.91215 29.04059 70.87156 49.956075 1.698588309 0.152841 196 22 SH16653 16653 YFR031C-A_6_221405_220494_INTRON_5_151 intron/exon 25.903045 93.460335 25.903045 68.55729 47.2301675 1.674219486 -0.035487 196 23 SH20547 20547 YGR225W spliced 44.635284 100.466459 72.5508715 1.860642634 0.081923 196 24 SH7234 7234 snR65 5' 33.094983 91.637598 62.3662905 1.794949913 0.018461 196 25 SH9764 9764 RUF4 RUF4 596 617 26.952016 88.759572 57.855794 1.762346858 -0.21277 196 26 SH10453 10453 RUF8 RUF8 191 210 29.690553 98.628531 64.159542 1.807261255 -0.227636 196 27 SH18537 18537 YMR230W_13_732413_733140_INTRON_53_462 intron 25.852245 99.566483 25.852245 74.714238 50.2832415 1.701423267 -0.121792 196 28 SH16460 16460 YER093C-A_5_348396_347908_INTRON_125_199 5' exon 36.19345 126.156619 36.19345 90.963169 63.5783095 1.803308976 0.109957 196 29 SH12648 12648 MT_15S MT_15S 26.076431 102.187669 26.076431 77.111238 51.5938345 1.712597806 -0.135466 196 30 SH14254 14254 MT VAR1 includes 5’ processing site 5' 30.29481 117.514156 30.29481 88.219346 59.257078 1.772740232 -0.02813 196 31 SH6920 6920 snR58 5' 34.848615 80.61102 57.7298175 1.761400185 0.298821 196 32 SH3247 3247 Thr1 3' flank 28.596079 95.924131 62.260105 1.794209849 -0.234896 196 33 SH18645 18645 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.867968 102.178887 28.867968 74.310919 51.5894435 1.712560843 0.094513 196 34 SH16673 16673 YFR032C-A_6_223758_223245_INTRON_1_331 intron 28.664615 114.90041 28.664615 87.235795 57.950205 1.763054977 -0.084818 196 35 SH15115 15115 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " orf 3 / 3' 28.432543 97.07215 28.432543 69.639607 49.036075 1.690515701 0.128918 196 36 SH13476 13476 MT COX1 intronic 26.154781 96.796534 26.154781 71.641753 48.898267 1.689293468 -0.059091 196 37 SH6128 6128 snR39B 5' 28.218079 86.663542 57.4408105 1.759220559 -0.102351 196 38 SH5974 5974 snR36 snR36 326 343 28.167084 85.430203 56.7986435 1.754337964 -0.091408 196 39 SH5938 5938 snR36 snR36 146 162 28.573526 76.803561 52.6885435 1.721716193 0.042164 196 40 SH4052 4052 SRP RNA SRP RNA 151 167 29.242562 86.605782 57.924172 1.762859834 -0.046888 196 41 SH97 97 Ala2 3' flank 29.772917 78.824009 54.298463 1.734787536 0.09364 196 42 SH2451 2451 Phe5 tRNA-exon/intron 26 42 32.102113 96.310306 64.2062095 1.807577032 -0.108566 196 43 SH3344 3344 Thr3 66-72 + 3' flank 66 26.75599 83.736392 55.246191 1.742302341 -0.168196 196 44 SH20803 20803 YKL180W spliced 28.184434 84.978488 56.581461 1.752674157 -0.08494 196 45 SH5067 5067 snR11 5' 25.950173 79.395531 52.672852 1.721586834 -0.172826 196 46 SH15992 15992 YDL136W_4_217600_218367_INTRON_4_408 intron 28.88656 106.858241 28.88656 78.971681 53.9291205 1.731823338 0.034821 196 47 SH10110 10110 RUF6 RUF6 396 413 27.245802 81.827135 54.5364685 1.736687012 -0.110922 196 48 SH15408 15408 YBL059C-A_2_110500_110086_INTRON_35_119 intron 29.759788 106.888258 29.759788 78.12847 53.944129 1.731944185 0.101683 196 49 SH3300 3300 Thr2 3' flank 27.425045 78.206184 52.8156145 1.722762337 -0.053252 196 50 SH17354 17354 YIL018W_9_316766_317930_INTRON_5_404 3' exon 32.004648 120.642391 32.004648 89.637743 60.8211955 1.784054952 0.020681 196 51 SH10240 10240 RUF6 1046-1051 + 3' 1046 26.870806 82.713458 54.792132 1.738718199 -0.147822 196 52 SH20396 20396 YFR024C-A spliced 30.077923 93.473696 61.7758095 1.790818445 -0.127245 196 53 SH9059 9059 snR14 / U4 RNA 5' 24.17026 75.883706 50.026983 1.699204312 -0.266254 196 54 SH15768 15768 YCR097W_3_293828_294314_INTRON_106_159 exon/intron 23.317311 88.930409 23.317311 66.613098 44.9652045 1.652876573 -0.203969 196 55 SH137 137 Arg1 61-73 61 73 7737.462757 8936.71298 8337.087869 3.921014379 -0.851134 196 56 SH6718 6718 snR49 snR49 116 135 29.787093 73.126972 51.4570325 1.711444737 0.169649 196 57 SH19588 19588 AEP2/ATP13 2.1 28.889988 85.842898 57.366443 1.758657922 -0.049436 196 58 SH14315 14315 MT VAR1 includes 5’ processing site VAR1 26.931513 100.088959 26.931513 74.157446 50.5444795 1.703673729 -0.03585 196 59 SH3278 3278 Thr2 5' flank - tRNA8 8 38.532909 87.881454 63.2071815 1.800766425 0.233481 196 60 SH21021 21021 YMR079W spliced 31.92764 94.773642 63.350641 1.801751014 -0.080563 196 61 SH19639 19639 RNA14 2.2 30.088632 90.976105 60.5323685 1.781987667 -0.084872 196 62 SH13394 13394 MT COX1 intronic 27.640306 103.097679 27.640306 76.457373 52.0488395 1.716411051 -0.015878 196 63 SH3464 3464 Trp1 3' flank 29.442057 85.977129 57.709593 1.761248011 -0.026518 196 64 SH8741 8741 LSR1 / U2 RNA U2 346 362 28.915787 76.28245 52.5991185 1.720978466 0.071415 196 65 SH19052 19052 YOR234C_15_779404_778554_INTRON_20_546 intron 28.407335 100.802483 28.407335 73.395148 50.9012415 1.706728375 0.076621 196 66 SH10256 10256 RUF6 3' 27.999751 76.680646 52.3401985 1.718835365 0.005547 196 67 SH9691 9691 RUF4 RUF4 231 250 25.685368 76.664935 51.1751515 1.709059137 -0.158996 196 68 SH7951 7951 snoRNA cluster1 3' 27.76135 115.82332 27.76135 89.06197 58.41166 1.766499549 -0.160429 196 69 SH9709 9709 RUF4 RUF4 321 337 32.053241 91.03507 61.5441555 1.789186817 -0.001218 196 70 SH298 298 Arg4 3' flank 25.551523 69.482594 47.5170585 1.676849548 -0.074665 196 71 SH10265 10265 RUF7 5' 68.425123 123.315183 95.870153 1.98168342 0.078225 196 72 SH12218 12218 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.347676 139.042374 39.347676 100.694698 70.021187 1.845229469 -0.028781 196 73 SH2360 2360 Phe3 3' flank 32.51006 86.690122 59.600091 1.775246923 0.093377 196 74 SH4397 4397 telomerase RNA telomerase 1021 1040 27.782411 87.547966 57.6651885 1.760913716 -0.141834 196 75 SH8460 8460 snoRNA cluster 5 snR128 31.788724 111.657141 31.788724 80.868417 56.3285705 1.75072873 0.170886 196 76 SH10393 10393 RUF7 3' 57.379798 115.602908 86.491353 1.936972691 0.028639 196 77 SH936 936 Gly1 5' flank 27.639669 75.338369 51.489019 1.711714617 -0.00116 196 78 SH11814 11814 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5956 5973 591.633214 535.445975 563.5395945 2.750924435 0.234985 196 79 SH2231 2231 Phe1 tRNA-exon/intron 31 49 26.625715 92.958776 59.7922455 1.776644864 -0.282002 196 80 SH6149 6149 snR39B 86-96 + 3' 86 33.297686 80.008861 56.6532735 1.753225009 0.249488 196 81 SH4645 4645 snR3 snR3 141 158 25.676774 74.930886 50.30383 1.701601052 -0.137687 196 82 SH7570 7570 snR189 5' 28.73715 74.567238 51.652194 1.713088774 0.082508 196 83 SH12963 12963 MT COX1 COX1ai2 31.169286 113.470488 31.169286 83.301202 57.235244 1.757663539 0.098696 196 84 SH13165 13165 MT COX1 intronic 28.419534 103.763273 28.419534 76.343739 52.3816365 1.719179062 0.037994 196 85 SH6667 6667 snR48 3' 29.807674 89.750195 59.7789345 1.77654817 -0.076441 196 86 SH11016 11016 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1966 1984 187.923042 256.296044 222.109543 2.346567219 -0.024058 196 87 SH2560 2560 Pro2 tRNA-exon/intron 36 52 31.774972 84.831455 58.3032135 1.765692492 0.096295 196 88 SH4663 4663 snR3 3' 27.802442 85.657675 56.7300585 1.753813231 -0.118621 196 89 SH8542 8542 snR19 / U1 RNA U1 206 223 29.93807 81.433832 55.685951 1.745745641 0.07145 196 90 SH11294 11294 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3356 3369 41.772497 95.580756 68.6766265 1.836808954 0.127929 196 91 SH1667 1667 Leu6 5' flank 27.126855 74.157509 50.642182 1.70451241 -0.021932 196 92 SH16607 16607 YFL034C-B_6_63992_63015_INTRON_21_134 intron 37.477569 113.825392 37.477569 77.347823 57.412696 1.759007941 0.460088 196 93 SH10098 10098 RUF6 RUF6 336 353 26.390475 69.272808 47.8316415 1.679715285 -0.009548 196 94 SH8622 8622 snR19 / U1 RNA U1 606 624 32.504469 165.095154 98.7998115 1.994756116 -1.19483 196 95 SH227 227 Arg3 5' flank - tRNA10 5' flank 10 28.549494 130.511669 79.5305815 1.900534158 -0.827704 196 96 SH4071 4071 SRP RNA SRP RNA 246 262 76.050423 175.748226 125.8993245 2.1000234 -0.453828 196 97 SH11180 11180 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2786 2799 29.614036 107.858626 68.736331 1.837186347 -0.407484 196 98 SH1692 1692 Leu6 tRNA 26 38 227.564042 414.078296 320.821169 2.506263017 -0.570356 196 99 SH2365 2365 Phe3 3' flank 46.843404 100.596894 73.720149 1.867586204 0.120676 196 100 SH10222 10222 RUF6 RUF6 956 970 58.058832 109.267607 83.6632195 1.922534573 0.148946 196 101 SH14255 14255 MT VAR1 includes 5’ processing site 5' 26.143332 95.484213 26.143332 70.340881 48.2421065 1.683426263 -0.04235 196 102 SH4458 4458 telomerase RNA 3' 26.668111 80.586688 53.6273995 1.729386738 -0.136008 196 103 SH12514 12514 MT_ORF6 + ORF7 (hypothetical) ORF6/7 27.45359 98.568579 27.45359 72.114989 49.7842895 1.697092313 0.027925 196 104 SH14684 14684 MT 21S rRNA 21S rRNA4 27.704516 99.217735 27.704516 72.513219 50.1088675 1.699914587 0.040163 197 2 SH5832 5832 snR35 snR35 346 363 31.543393 86.752127 59.14776 1.771938302 0.05187 197 3 SH7930 7930 snoRNA cluster1 snR72 29.269637 115.563841 29.269637 87.294204 58.2819205 1.765533854 -0.057898 197 4 SH12334 12334 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.123854 113.155199 29.123854 85.031345 57.0775995 1.7564657 -0.023951 197 5 SH2637 2637 Pro3 3' flank 30.682127 84.300952 57.4915395 1.759603938 0.059157 197 6 SH5622 5622 snR34 snR34 31 46 32.056389 86.624484 59.3404365 1.773350737 0.07574 197 7 SH12381 12381 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.625613 106.637802 29.625613 78.012189 53.818901 1.730934825 0.09466 197 8 SH12257 12257 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 135.590288 273.851357 135.590288 139.261069 137.4256785 2.13806789 0.611401 197 9 SH4123 4123 SRP RNA SRP RNA 506 518 318.799612 268.862137 293.8308745 2.468097428 0.556128 197 10 SH935 935 Gly1 5' flank 27.394135 64.165958 45.7800465 1.660676229 0.135819 197 11 SH4949 4949 snR9 snR9 151 163 39.892073 84.746134 62.3191035 1.794621197 0.336881 197 12 SH16787 16787 YGL103W_7_310965_311925_INTRON_50_560 intron 27.72576 114.848024 27.72576 88.122264 57.924012 1.762858635 -0.152226 197 13 SH5806 5806 snR35 snR35 216 233 33.026318 80.293273 56.6597955 1.753275003 0.233046 197 14 SH20673 20673 YIL106W spliced 31.411322 67.055552 49.233437 1.692260155 0.356467 197 15 SH3723 3723 Val3 3' flank 25.646162 56.105131 40.8756465 1.611464635 0.149457 197 16 SH4440 4440 telomerase RNA telomerase 1236 1253 26.248523 63.388146 44.8183345 1.651455714 0.067795 197 17 SH13992 13992 MT COB intronic 28.991062 96.904344 28.991062 68.913282 48.952172 1.689771966 0.176441 197 18 SH9421 9421 RUF2 5' 29.427998 70.927262 50.17763 1.700510145 0.177375 197 19 SH16805 16805 YGL137W_7_249872_252741_INTRON_19_218 intron 27.415846 97.815005 27.415846 71.399159 49.4075025 1.693792901 0.034849 197 20 SH1369 1369 Leu1 5' flank 36.866179 100.672421 68.7693 1.837394604 -0.081921 197 21 SH6524 6524 snR46 snR46 111 128 26.933146 69.851014 48.39208 1.684774289 0.021675 197 22 SH4332 4332 telomerase RNA telomerase 696 712 52.312477 109.249272 80.7808745 1.90730855 0.052757 197 23 SH12133 12133 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7551 7564 33.140448 82.788212 57.96433 1.76316082 0.190326 197 24 SH8554 8554 snR19 / U1 RNA U1 266 282 28.402156 68.978439 48.6902975 1.687442428 0.136012 197 25 SH500 500 Asp2 61-72 + 3' flank 61 73 43.948665 98.568422 71.2585435 1.852836941 0.107321 197 26 SH16733 16733 YGL076C_7_365994_364333_INTRON_565_1032 intron 27.564531 101.863974 27.564531 75.299443 51.431987 1.711233303 -0.005772 197 27 SH18311 18311 YML073C_13_124172_123227_INTRON_16_430 intron 28.204297 111.631745 28.204297 84.427448 56.3158725 1.750630817 -0.077099 197 28 SH12449 12449 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.017378 124.769963 35.017378 90.752585 62.8849815 1.798546937 0.086429 197 29 SH7151 7151 snR63 3' 28.103539 70.929083 49.516311 1.694748282 0.088898 197 30 SH9958 9958 RUF5-1 RUF5-1 596 610 39.171208 95.559686 67.365447 1.828437196 0.075483 197 31 SH5522 5522 snR32 3' 28.413678 76.684051 52.5488645 1.720563336 0.033153 197 32 SH5203 5203 snR13 3' 29.140446 84.730158 56.935302 1.755381629 -0.019159 197 33 SH21242 21242 YOR312C spliced 29.408677 82.965043 56.18686 1.749634762 0.019183 197 34 SH1782 1782 Leu8 5' flank 26.652821 83.282919 54.96787 1.740108908 -0.170039 197 35 SH11980 11980 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6786 6803 41.602329 88.335561 64.968945 1.812705815 0.287165 197 36 SH10374 10374 RUF7 RUF7 481 495 31.916691 87.330905 59.623798 1.775419637 0.05733 197 37 SH18705 18705 YNL130C_14_381156_379555_INTRON_30_470 intron 29.358985 109.890213 29.358985 81.531228 55.4451065 1.743863222 0.033451 197 38 SH2722 2722 Pro5 5' flank - tRNA5 5 40.680683 103.368442 72.0245625 1.857480629 -0.055348 197 39 SH14024 14024 MT COB Exon4 28.577267 112.148094 28.577267 84.570827 56.574047 1.752617247 -0.054045 197 40 SH7214 7214 snR64 3' 27.398215 70.061059 48.729637 1.687793176 0.051764 197 41 SH20257 20257 YDR381W spliced 27.813897 80.286383 54.05014 1.732796823 -0.053008 197 42 SH14572 14572 MT 21S rRNA 21S rRNA3 29.729305 122.998001 29.729305 94.268696 61.9990005 1.792384688 -0.15595 197 43 SH12025 12025 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7011 7031 26.470141 78.297522 52.3838315 1.719197261 -0.121257 197 44 SH17619 17619 YJR021C_10_469271_468247_INTRON_317_396 3' exon 30.280553 111.524585 30.280553 82.244032 56.2622925 1.750217424 0.079737 197 45 SH12359 12359 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.530242 118.878442 30.530242 89.3482 59.939221 1.777711094 -0.037439 197 46 SH10720 10720 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 486 504 28.936356 94.051288 61.493822 1.788831486 -0.188561 197 47 SH2802 2802 Pro6 101-102 + 3' flank 101 29.261514 77.012502 53.137008 1.725397097 0.084273 197 48 SH21476 21476 copy of SH1443 31.563629 97.954139 64.758884 1.811299356 -0.157392 197 49 SH12169 12169 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7731 7749 29.109656 70.411838 49.760747 1.696886891 0.16366 197 50 SH1519 1519 Leu3 tRNA-intron/exon 66 82 33.305298 91.668289 62.4867935 1.795788239 0.023196 197 51 SH11722 11722 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5496 5513 31.21888 74.856856 53.037868 1.724586058 0.234698 197 52 SH7485 7485 snR71 snR71 41 62 24.38554 78.625588 51.505564 1.711854147 -0.283237 197 53 SH20472 20472 YGL187C spliced 41.134778 87.739621 64.4371995 1.809136657 0.291828 197 54 SH2711 2711 Pro5 5' flank 42.39992 101.25174 71.82583 1.856280653 0.022095 197 55 SH2780 2780 Pro6 5' flank - tRNA7 7 46.418881 115.583919 81.0014 1.908492525 -0.166291 197 56 SH10239 10239 RUF6 1041-1051 + 3' 1041 27.365603 79.734011 53.549807 1.72875791 -0.076712 197 57 SH4604 4604 snR3 5' 28.838094 80.159804 54.498949 1.736388127 0.016706 197 58 SH1311 1311 Ile3 5' flank 26.926272 78.471292 52.698782 1.721800578 -0.091223 197 59 SH15774 15774 YDL012C_4_431513_431104_INTRON_46_131 5' exon 31.514778 115.641247 31.514778 85.126469 58.3206235 1.765822158 0.079919 197 60 SH10924 10924 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1506 1524 280.501791 371.599723 326.050757 2.513285213 -0.130196 197 61 SH14793 14793 "MT tRNAs (Lys, Arg1, Gly)" 5' 25.149471 101.963351 25.149471 77.81388 51.4816755 1.711652673 -0.213875 197 62 SH19610 19610 RNA14 1.1 29.739596 81.758227 55.7489115 1.746236392 0.054937 197 63 SH5144 5144 snR11 3' 34.108545 79.408378 56.7584615 1.754030615 0.293344 197 64 SH1931 1931 Lys1 3' flank 29.346041 77.746796 53.5464185 1.728730428 0.080207 197 65 SH6256 6256 snR42 snR42 61 81 26.955452 81.417605 54.1865285 1.733891329 -0.126086 197 66 SH11263 11263 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S/ITS2 3201 3217 31.258004 82.129111 56.6935575 1.75353371 0.124422 197 67 SH11003 11003 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1901 1919 1632.121912 1482.041957 1557.081935 3.192311466 -0.039722 197 68 SH20138 20138 YDL108W spliced 29.390968 94.266436 61.828702 1.791190129 -0.171232 197 69 SH11049 11049 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2131 2148 37.036568 79.723532 58.38005 1.766264463 0.397446 197 70 SH1611 1611 Leu5 5' flank 28.060251 85.212758 56.6365045 1.753096442 -0.096016 197 71 SH320 320 Arg5 5' flank 34.827926 87.353582 61.090754 1.785975485 0.159308 197 72 SH10521 10521 RUF8 RUF8 531 551 28.141003 87.621653 57.881328 1.762538487 -0.118512 197 73 SH9938 9938 RUF5-1 RUF5-1 496 512 28.122809 76.650263 52.386536 1.719219682 0.014206 197 74 SH5286 5286 snR30 snR30 281 295 32.117288 89.350496 60.733892 1.783431113 0.030348 197 75 SH8898 8898 LSR1 / U2 RNA U2 1131 1147 27.033577 74.583157 50.808367 1.705935237 -0.034058 197 76 SH11255 11255 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3161 3174 28.91081 75.211614 52.061212 1.716514274 0.085245 197 77 SH7866 7866 snoRNA cluster1 intergenic/snR73 29.0077 97.232778 29.0077 69.225078 49.116389 1.69122643 0.173215 197 78 SH12604 12604 MT_15S MT_15S 24.202252 93.680482 24.202252 70.47823 47.340241 1.675230465 -0.191662 197 79 SH6696 6696 snR49 snR49 6 22 38.030998 95.19895 66.614974 1.823571863 0.05898 197 80 SH7302 7302 snR66 snR66 1 20 40.8785 108.696218 74.787359 1.873828197 -0.153127 197 81 SH21215 21215 YOR122C spliced 27.736731 81.850181 54.793456 1.738728694 -0.077556 197 82 SH8472 8472 snoRNA cluster 5 3' 29.090883 112.475056 29.090883 84.384173 56.737528 1.75387041 -0.018269 197 83 SH2928 2928 Pro8 3' flank 31.744848 92.509807 62.1273275 1.793282672 -0.039017 197 84 SH7729 7729 snoRNA cluster1 intergenic 26.701127 101.171802 26.701127 75.470675 51.085901 1.708301057 -0.069239 197 85 SH16484 16484 YER102W_5_362729_363698_INTRON_1_360 intron 25.691574 94.143167 25.691574 69.451593 47.5715835 1.677347608 -0.06371 197 86 SH10069 10069 RUF6 RUF6 191 208 39.871385 100.309607 70.090496 1.845659133 -0.009999 197 87 SH5074 5074 snR11 5' 26.695604 73.000099 49.8478515 1.697646444 -0.037699 197 88 SH15848 15848 YDL075W_4_322225_322987_INTRON_58_478 intron 27.227235 108.342136 27.227235 82.114901 54.671068 1.737757558 -0.115722 197 89 SH19416 19416 YPR132W_16_794960_795762_INTRON_66_430 exon/intron 28.644264 107.221784 28.644264 79.57752 54.110892 1.733284693 0.011299 197 90 SH1922 1922 Lys1 66-72 + 3' flank 66 82 28.502906 68.587951 48.5454285 1.686148339 0.148279 197 91 SH5020 5020 snR10 snR10 131 149 29.274491 142.565101 85.919796 1.934093237 -0.989276 197 92 SH20658 20658 YIL018W spliced 31.050849 100.232579 65.641714 1.817179913 -0.218085 197 93 SH9208 9208 snR6 / U6 RNA 5' 28.451782 99.561679 64.0067305 1.806225644 -0.299245 197 94 SH20804 20804 YKL180W spliced 36.491715 84.89037 60.6910425 1.783124598 0.257278 197 95 SH5943 5943 snR36 snR36 171 186 30.235442 87.107285 58.6713635 1.768426181 -0.011131 197 96 SH8304 8304 snoRNA cluster4 intergenic 33.166273 116.326193 33.166273 84.15992 58.6630965 1.768364983 0.165947 197 97 SH19517 19517 ACT1 27.359117 64.684859 46.021988 1.662965375 0.125627 197 98 SH18082 18082 YLR344W_12_819312_820142_INTRON_20_466 intron 27.396848 98.04841 27.396848 71.651562 49.524205 1.694817513 0.030127 197 99 SH10053 10053 RUF6 RUF6 111 127 27.157337 72.110831 49.634084 1.695780011 0.007086 197 100 SH168 168 Arg2 5' flank 34.335835 83.350651 58.843243 1.7696966 0.227279 197 101 SH20832 20832 YKR095W-A spliced 35.400102 93.884846 64.642474 1.810517969 0.026815 197 102 SH9009 9009 snR17a / U3a U3a 331 353 28.998513 72.987168 50.9928405 1.707509205 0.121011 197 103 SH17057 17057 YGR214W_7_920570_921783_INTRON_91_545 intron 28.669597 105.154388 28.669597 77.484791 53.077194 1.724907955 0.039647 197 104 SH5652 5652 snR34 snR34 181 198 42.045229 82.057008 62.0511185 1.792749614 0.447293 198 2 SH12947 12947 MT COX1 COX1ai2 29.032972 117.314701 29.032972 89.281729 59.1573505 1.772008715 -0.10359 198 3 SH2600 2600 Pro3 5' flank 29.326254 79.205125 54.2656895 1.734525326 0.06033 198 4 SH10176 10176 RUF6 RUF6 726 745 26.890172 73.574807 50.2324895 1.700984702 -0.031239 198 5 SH8045 8045 snoRNA cluster 2 intergenic 26.155563 99.277599 26.155563 74.122036 50.1387995 1.700173931 -0.091693 198 6 SH19724 19724 Negative Control 29.494089 88.517531 59.00581 1.770894777 -0.069202 198 7 SH8681 8681 LSR1 / U2 RNA U2 46 63 26.740618 86.701575 56.7210965 1.753744618 -0.20412 198 8 SH5485 5485 snR32 snR32 86 103 28.937423 75.374741 52.156082 1.717304959 0.08481 198 9 SH15189 15189 MT COX3 cox3 27.159943 96.133553 27.159943 69.97361 48.5667765 1.686339279 0.036141 198 10 SH7061 7061 snR62 96-100 + 3' 96 27.221413 77.668944 52.4451785 1.719705568 -0.060393 198 11 SH6377 6377 snR43 snR43 126 141 31.333056 86.437162 58.885109 1.770005483 0.048542 198 12 SH1288 1288 Ile2 3' flank 27.001544 66.754786 46.878165 1.670970603 0.070066 198 13 SH16975 16975 YGR034W_7_555923_556666_INTRON_20_496 intron 27.112476 120.253449 27.112476 94.140973 60.6267245 1.782664105 -0.277173 198 14 SH12881 12881 MT COX1 COX1ai1 29.678058 123.492532 29.678058 94.814474 62.246266 1.794113304 -0.16719 198 15 SH10818 10818 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 976 991 10971.14097 5839.864795 8405.502881 3.924563701 0.277117 198 16 SH1132 1132 Gly4 3' flank 33.3999 147.774073 90.5869865 1.957065812 -0.94925 198 17 SH17394 17394 YIL069C_9_232366_231550_INTRON_4_412 intron 29.167845 105.077705 29.167845 76.90986 53.0388525 1.72459412 0.079567 198 18 SH12340 12340 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.101239 127.995908 34.101239 94.894669 64.497954 1.809545938 -0.026861 198 19 SH12143 12143 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7601 7618 32.052541 93.238449 62.645495 1.796889845 -0.044063 198 20 SH3414 3414 Trp1 5' flank 27.527368 72.210868 49.869118 1.697831687 0.031819 198 21 SH14161 14161 MT COB intronic 27.098484 95.469319 27.098484 69.370835 48.2346595 1.683359217 0.04008 198 22 SH3432 3432 Trp1 5' flank - tRNA7 7 32.698731 90.490239 61.594485 1.789541828 0.033751 198 23 SH15941 15941 YDL125C_4_239605_239018_INTRON_98_208 5' exon 33.606606 123.484739 33.606606 90.878133 62.2423695 1.794086117 0.048473 198 24 SH6802 6802 snR52 5' 28.961187 76.053737 52.507462 1.720221027 0.077378 198 25 SH19678 19678 SIR1 2.4 33.861211 89.58663 61.7239205 1.790453503 0.08399 198 26 SH11682 11682 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5296 5311 1974.566406 1339.595796 1657.081101 3.219343764 0.369475 198 27 SH7446 7446 snR69 3' 28.768471 73.169915 50.969193 1.707307757 0.103501 198 28 SH18597 18597 YNL069C_14_494998_493953_INTRON_29_477 intron 30.909362 124.157125 30.909362 94.247763 62.5785625 1.796425583 -0.103507 198 29 SH18257 18257 YML056C_13_164176_162194_INTRON_461_868 5' exon 30.526459 105.607975 30.526459 76.081516 53.3039875 1.726759698 0.17619 198 30 SH5890 5890 snR36 5' 26.020356 89.025345 57.5228505 1.759840399 -0.282047 198 31 SH1849 1849 Leu9 5' flank - tRNA3 3 33.270522 88.70716 60.988841 1.78525038 0.088743 198 32 SH15367 15367 YBL027W_2_168385_169338_INTRON_3_386 intron 27.197253 102.664048 27.197253 76.466795 51.832024 1.714598168 -0.046448 198 33 SH10133 10133 RUF6 RUF6 511 527 29.604808 92.236845 60.9208265 1.784765787 -0.127859 198 34 SH686 686 Gln3 5' flank 26.613512 77.036594 51.825053 1.714539755 -0.095275 198 35 SH14546 14546 MT 21S rRNA 21S rRNA3 27.925309 117.13421 27.925309 90.208901 59.067105 1.771345686 -0.171635 198 36 SH16247 16247 YDR381W_4_1236547_1237993_INTRON_286_1051 3' exon 27.263559 99.016565 27.263559 72.753006 50.0082825 1.699041939 0.006097 198 37 SH20361 20361 YER131W spliced 42.12265 99.360796 70.741723 1.849675633 0.054795 198 38 SH21542 21542 copy of SH4152 37.312839 90.660211 63.986525 1.806088525 0.142766 198 39 SH18729 18729 YNL147W_14_350937_351380_INTRON_19_138 intron 26.486562 96.334195 26.486562 70.847633 48.6670975 1.687235446 -0.024119 198 40 SH5812 5812 snR35 snR35 246 263 27.570871 75.977313 51.774092 1.714112491 -0.014311 198 41 SH16475 16475 YER102W_5_362729_363698_INTRON_1_360 intron 27.875832 108.971772 27.875832 82.09594 54.985886 1.740251227 -0.071133 198 42 SH1134 1134 Gly4 3' flank 312.224174 313.466796 312.845485 2.495329892 0.280776 198 43 SH11986 11986 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6816 6833 35.240547 84.413846 59.8271965 1.776898652 0.23889 198 44 SH4910 4910 snR9 5' 50.523531 96.524526 73.5240285 1.866429295 0.269315 198 45 SH3006 3006 Ser2 5' flank - tRNA9 9 25.858459 73.084336 49.4713975 1.694354179 -0.100164 198 46 SH16597 16597 YFL034C-A_6_64931_64242_INTRON_13_333 intron 28.488905 110.866947 28.488905 83.378042 55.9334735 1.74767179 -0.045658 198 47 SH19503 19503 YPT1 28.516731 71.570916 50.0438235 1.699350484 0.108362 198 48 SH14600 14600 MT 21S rRNA Sce1 endonuc 30.833053 106.671152 30.833053 76.838099 53.835576 1.731069364 0.185112 198 49 SH2931 2931 Pro8 3' flank 96.648841 150.053535 123.351188 2.091143337 0.092673 198 50 SH6251 6251 snR42 snR42 36 52 30.49908 89.320072 59.909576 1.777496246 -0.038318 198 51 SH2916 2916 Pro8 101-105 + 3' flank 101 29.295081 77.512557 53.403819 1.727572315 0.079953 198 52 SH16755 16755 YGL076C_7_365994_364333_INTRON_565_1032 3' exon 31.790131 125.14992 31.790131 94.359789 63.07496 1.799856984 -0.075365 198 53 SH12611 12611 MT_15S MT_15S 42.662864 142.78889 42.662864 101.126026 71.894445 1.856695335 0.029913 198 54 SH14817 14817 "MT tRNAs (Lys, Arg1, Gly)" intergenic 67.475974 213.32014 67.475974 146.844166 107.16007 2.030032989 -0.258784 198 55 SH13406 13406 MT COX1 intronic 28.069076 99.53404 28.069076 72.464964 50.26702 1.70128314 0.065978 198 56 SH13084 13084 MT COX1 COX1ai3 25.464954 103.474988 25.464954 79.010034 52.237494 1.717982334 -0.204506 198 57 SH12600 12600 MT_15S MT_15S 4529.894411 7776.826406 4529.894411 3247.931995 3888.913203 3.58982825 0.054377 198 58 SH15485 15485 YBL092W_2_45639_46364_INTRON_1_333 intron 31.257399 122.062925 31.257399 91.805526 61.5314625 1.789097238 -0.047906 198 59 SH21718 21718 copy of SH11503 11936.7144 8485.90906 10211.31173 4.009081535 -0.204192 198 60 SH17811 17811 YKR057W_11_551293_551878_INTRON_25_346 intron 29.091897 109.077426 29.091897 80.985529 55.038713 1.74066827 0.022956 198 61 SH14221 14221 MT ATP9 ATP9 31.769654 125.427823 31.769654 94.658169 63.2139115 1.800812664 -0.082327 198 62 SH12220 12220 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.825029 117.084599 31.825029 86.25957 59.0422995 1.771163263 0.072576 198 63 SH8127 8127 snoRNA cluster 3; snR41 31.861958 121.434278 31.861958 90.57232 61.217139 1.786873029 -0.001345 198 64 SH1912 1912 Lys1 tRNA 16 28 32.086438 94.3041 63.195269 1.800684567 -0.066237 198 65 SH10136 10136 RUF6 RUF6 526 538 29.877483 86.614499 58.245991 1.765266039 -0.018295 198 66 SH18813 18813 YNL302C_14_62942_61957_INTRON_21_571 intron 29.67793 107.247295 29.67793 78.569365 54.1236475 1.733387057 0.090859 198 67 SH15613 15613 YBR181C_2_592732_591670_INTRON_7_358 exon/intron 31.516706 116.948995 31.516706 86.432289 58.9744975 1.770664249 0.056451 198 68 SH19759 19759 Negative Control 30.98701 92.318907 61.6529585 1.789953922 -0.068161 198 69 SH16823 16823 YGL178W_7_167356_170575_INTRON_4_643 intron 28.408124 103.807876 28.408124 76.399752 52.403938 1.719363924 0.036503 198 70 SH1716 1716 Leu6 3' flank 28.245087 87.167606 57.7063465 1.761223579 -0.106355 198 71 SH7059 7059 snR62 86-100 + 3' 86 25.976988 70.131701 48.0543445 1.681732658 -0.051785 198 72 SH4825 4825 snR8 5' 28.307796 92.443597 60.3756965 1.780862154 -0.191283 198 73 SH8938 8938 snR17a / U3a 5' 28.318529 71.770157 50.044343 1.699354992 0.092262 198 74 SH16575 16575 YER179W_5_548416_549512_INTRON_133_224 exon/intron 27.70225 106.970904 27.70225 80.268654 53.985452 1.732276742 -0.060365 198 75 SH17631 17631 YJR094W-A_10_608000_608553_INTRON_3_277 intron 35.240449 123.406138 35.240449 89.165689 62.203069 1.793811813 0.127678 198 76 SH3228 3228 Thr1 5' flank - tRNA12 12 43.327733 93.692802 68.5102675 1.835755663 0.199154 198 77 SH1414 1414 Leu1 3' flank 55.078181 110.537615 82.807898 1.918071761 0.076559 198 78 SH7144 7144 snR63 snR63 226 244 25.731876 76.562316 51.147096 1.708820981 -0.154227 198 79 SH9745 9745 RUF4 RUF4 501 515 50.179137 105.83155 78.0053435 1.892124354 0.078892 198 80 SH14418 14418 MT 21S rRNA 21S rRNA3 161.871989 392.978075 161.871989 232.106086 196.9890375 2.294442058 -0.041198 198 81 SH12673 12673 MT tRNA Trp 5' 27.839534 106.921138 27.839534 80.081604 53.960569 1.732076521 -0.048715 198 82 SH16614 16614 YFL039C_6_54695_53260_INTRON_11_318 5' exon 27.033768 102.74415 27.033768 76.710382 51.872075 1.714933621 -0.06103 198 83 SH10217 10217 RUF6 RUF6 931 950 29.653101 69.433566 49.5433335 1.694985225 0.212707 198 84 SH16544 16544 YER133W_5_432491_433954_INTRON_178_702 exon/intron 29.124729 118.569523 29.124729 90.444794 59.7847615 1.776590501 -0.119389 198 85 SH12584 12584 MT_15S MT_15S 27.892494 101.203033 27.892494 74.310539 51.1015165 1.708433789 0.029691 198 86 SH11406 11406 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3916 3933 39.505073 89.264534 64.3848035 1.808783375 0.223028 198 87 SH6555 6555 snR46 3' 36.745881 85.826214 61.2860475 1.787361613 0.240947 198 88 SH11143 11143 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2601 2617 303.791627 323.325399 313.558513 2.496318596 0.195977 198 89 SH18552 18552 YMR230W_13_732413_733140_INTRON_53_462 intron 27.358292 112.041588 27.358292 85.683296 56.520794 1.752208254 -0.149264 198 90 SH19143 19143 YPL075W_16_412249_415357_INTRON_9_759 intron 27.525689 111.783157 27.525689 85.257468 56.3915785 1.751214251 -0.132782 198 91 SH8871 8871 LSR1 / U2 RNA U2 996 1012 31.628666 75.357883 53.4932745 1.728299183 0.25259 198 92 SH10151 10151 RUF6 RUF6 601 623 26.885893 64.17351 45.5297015 1.658294803 0.100126 198 93 SH11761 11761 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5691 5708 285.673814 301.194615 293.4342145 2.467510751 0.233324 198 94 SH19447 19447 CYC1 30.234966 78.719107 54.4770365 1.736213474 0.12399 198 95 SH19395 19395 YPR043W_16_654161_654842_INTRON_3_405 3' exon 33.360898 136.500351 33.360898 104.139453 68.7501755 1.837273811 -0.234398 198 96 SH10910 10910 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1436 1451 17915.94114 9582.707609 13749.32437 4.138281358 0.133157 198 97 SH7501 7501 snR71 3' 29.58514 75.564222 52.574681 1.720776646 0.124005 198 98 SH3607 3607 Val1 tRNA 31 46 53.884753 100.313006 77.0988795 1.887048066 0.249218 198 99 SH1505 1505 Leu3 5' flank - tRNA12 12 71.837387 129.227888 100.5326375 2.002307077 0.042242 198 100 SH254 254 Arg3 3' flank 30.368839 86.572554 58.4706965 1.766938267 0.004287 198 101 SH10629 10629 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 31 51 26.559448 87.939001 57.2492245 1.757769608 -0.231117 198 102 SH4325 4325 telomerase RNA telomerase 661 678 31.464036 92.857548 62.160792 1.793516539 -0.056713 198 103 SH1717 1717 Leu6 3' flank 28.964521 88.702416 58.8334685 1.769624453 -0.096679 198 104 SH2642 2642 Pro3 3' flank 30.744793 94.798685 62.771739 1.79776416 -0.119669 199 2 SH11505 11505 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4411 4428 109.090284 128.180052 118.635168 2.07421345 0.506664 199 3 SH4956 4956 snR9 186-187 + 3' 186 26.158694 68.867131 47.5129125 1.676811653 -0.0209 199 4 SH13360 13360 MT COX1 intronic 30.63233 113.745299 30.63233 84.112969 57.3726495 1.758704906 0.060436 199 5 SH21052 21052 YMR143W spliced 27.478257 79.381043 53.42965 1.727782329 -0.064529 199 6 SH19515 19515 ACT1 29.496623 76.528212 53.0124175 1.72437761 0.105667 199 7 SH3868 3868 RNaseP RNaseP 306 322 31.891098 85.950173 58.9206355 1.770267422 0.08091 199 8 SH11612 11612 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4946 4959 42.566428 86.96486 64.765644 1.811344688 0.338271 199 9 SH14436 14436 MT 21S rRNA 21S rRNA3 26.447546 105.600077 26.447546 80.152531 53.3000385 1.726727523 -0.146248 199 10 SH17805 17805 YKL190W_11_82949_83552_INTRON_53_128 intron/exon 33.240643 130.34214 33.240643 98.101497 65.67107 1.817374092 -0.116197 199 11 SH14774 14774 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu / intergenic 27.03097 109.499783 27.03097 83.468813 55.2498915 1.742331429 -0.145726 199 12 SH13669 13669 MT ATP6 ATP6 29.351544 112.178655 29.351544 83.827111 56.5893275 1.752734533 0.00517 199 13 SH21933 21933 copy of SH21373 38.322836 88.917504 63.62017 1.803594825 0.205009 199 14 SH15678 15678 YBR191W_2_606228_607098_INTRON_12_399 intron 29.860963 122.354469 29.860963 93.493506 61.6772345 1.790124892 -0.137262 199 15 SH6949 6949 snR58 3' 30.414315 93.270386 61.8423505 1.791285988 -0.108991 199 16 SH12774 12774 MT COX1 COX1ai1 28.784082 138.512798 28.784082 110.728716 69.756399 1.843584053 -0.48511 199 17 SH9078 9078 snR14 / U4 RNA U4 6 22 77.528867 161.47702 119.5029435 2.077378603 -0.281642 199 18 SH19723 19723 Negative Control 29.505095 79.126614 54.3158545 1.734926616 0.072778 199 19 SH1093 1093 Gly4 5' flank 32.09121 91.906608 61.998909 1.792384047 -0.014373 199 20 SH20912 20912 YLR333C spliced 27.559063 83.514777 55.53692 1.744581791 -0.109822 199 21 SH18354 18354 YMR033W_13_337787_339276_INTRON_31_116 5' exon 29.46804 112.163497 29.46804 83.695457 56.5817485 1.752676364 0.014207 199 22 SH15218 15218 MT COX3 cox3 28.462431 102.595173 28.462431 75.132742 51.7975865 1.714309524 0.056845 199 23 SH17531 17531 YJL177W_10_90783_91654_INTRON_310_626 5' exon 25.541155 105.344508 25.541155 80.803353 53.172254 1.725685071 -0.220288 199 24 SH745 745 Gln4 5' flank - tRNA15 15 32.188909 88.141843 60.165376 1.779346635 0.054398 199 25 SH21851 21851 copy of SH17601 26.247286 73.122214 49.68475 1.696223109 -0.071919 199 26 SH12081 12081 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7291 7309 29.216673 91.420672 60.3186725 1.780451775 -0.131773 199 27 SH13047 13047 MT COX1 COX1ai2 27.152399 97.205735 27.152399 71.053336 49.1028675 1.691106855 0.020912 199 28 SH20297 20297 YEL012W spliced 29.169153 87.370705 58.269929 1.765444489 -0.063856 199 29 SH4714 4714 snR4 snR4 106 120 28.694245 78.637078 53.6656615 1.729696487 0.026486 199 30 SH12343 12343 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.836188 136.763182 39.836188 97.926994 68.881591 1.83810317 0.038858 199 31 SH20054 20054 YBR220C spliced 28.984667 73.19719 51.0909285 1.708343795 0.117234 199 32 SH15689 15689 YBR191W_2_606228_607098_INTRON_12_399 intron/exon 27.290593 99.213788 27.290593 72.923195 50.106894 1.699897483 0.005763 199 33 SH153 153 Arg1 3' flank 27.168742 78.377567 52.7731545 1.722413055 -0.073136 199 34 SH20307 20307 YER003C spliced 33.105679 87.874382 60.4900305 1.781683803 0.096686 199 35 SH1517 1517 Leu3 tRNA-intron/exon 56 73 38.893375 87.677755 63.285565 1.801304662 0.246152 199 36 SH4836 4836 snR8 5' 25.427289 67.59996 46.5136245 1.667580183 -0.056994 199 37 SH1264 1264 Ile2 tRNA 16 31 29.92194 79.928177 54.9250585 1.739770528 0.08912 199 38 SH10981 10981 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1791 1809 78.269761 115.725841 96.997801 1.986761889 0.335095 199 39 SH4723 4723 snR4 snR4 151 168 29.200368 73.731775 51.4660715 1.711521019 0.123918 199 40 SH1326 1326 Ile3 tRNA 11 25 34.637368 98.491133 66.5642505 1.823241046 -0.089066 199 41 SH17056 17056 YGR214W_7_920570_921783_INTRON_91_545 intron 27.761213 101.852312 27.761213 75.091099 51.426156 1.711184063 0.010399 199 42 SH12322 12322 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.696116 96.38882 29.696116 67.692704 48.69441 1.687479108 0.239864 199 43 SH20059 20059 YBR255C-A spliced 26.465643 81.159279 53.812461 1.730882854 -0.157456 199 44 SH18518 18518 YMR201C_13_667043_665844_INTRON_28_111 3' exon 72.679147 202.023294 72.679147 130.344147 101.511647 2.006515874 0.038468 199 45 SH5978 5978 snR36 346-355 + 3' 346 363 27.99453 80.96458 54.479555 1.736233552 -0.049233 199 46 SH11689 11689 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5331 5348 30486.06607 18258.03983 24372.05295 4.386892113 -0.191292 199 47 SH18380 18380 YMR116C_13_500687_499455_INTRON_538_810 intron 37.708403 131.5362 37.708403 94.827797 66.2681 1.821304519 0.060028 199 48 SH21575 21575 copy of SH5621 32.49744 87.642449 60.0699445 1.778657231 0.075956 199 49 SH4946 4946 snR9 snR9 136 153 28.640886 92.841696 60.741291 1.783484018 -0.182274 199 50 SH7990 7990 snoRNA cluster 2 snR57/intergenic 28.347665 94.730381 28.347665 67.382716 47.8651905 1.680019792 0.154773 199 51 SH20091 20091 YDL012C spliced 27.019688 75.57648 51.298084 1.710101144 -0.047743 199 52 SH16056 16056 YDL219W_4_65243_65766_INTRON_66_136 5' exon 30.776686 106.505007 30.776686 76.728321 53.7525035 1.730398696 0.183096 199 53 SH906 906 Glu3 tRNA 41 53 1477.880959 1812.969455 1645.425207 3.216278146 -0.486724 199 54 SH7408 7408 snR69 5' 26.01929 67.344197 46.6817435 1.669147068 -0.009732 199 55 SH21015 21015 YMR033W spliced 29.281128 75.702583 52.4918555 1.720091925 0.102712 199 56 SH11447 11447 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4121 4138 29.27178 87.928565 58.6001725 1.767898894 -0.069001 199 57 SH4026 4026 SRP RNA SRP RNA 21 37 30.928117 86.709657 58.818887 1.769516802 0.026263 199 58 SH17766 17766 YKL157W_11_154993_158183_INTRON_282_664 3' exon 28.365785 100.39833 28.365785 73.032545 50.699165 1.705000807 0.078742 199 59 SH12752 12752 MT COX1 COX1ai1 28.1068 98.944111 28.1068 71.837311 49.9720555 1.698727214 0.076912 199 60 SH276 276 Arg4 5' flank 28.515783 82.507769 55.511776 1.744385122 -0.033376 199 61 SH19813 19813 Negative Control 31.454308 85.543857 58.4990825 1.767149055 0.069782 199 62 SH8627 8627 snR19 / U1 RNA U1 631 643 589.08202 631.744793 610.4134065 2.785624063 -0.034492 199 63 SH2979 2979 Ser1 3' flank 29.809972 79.360972 54.585472 1.73707707 0.089186 199 64 SH13786 13786 MT COB intronic 27.792274 104.597354 27.792274 77.80508 52.798677 1.72262304 -0.023042 199 65 SH8656 8656 LSR1 / U2 RNA 5' 30.286607 79.813294 55.0499505 1.740756933 0.113384 199 66 SH4030 4030 SRP RNA SRP RNA 41 59 28.853962 80.168068 54.511015 1.736484269 0.01764 199 67 SH47 47 Ala1 3' flank 29.445017 85.759636 57.6023265 1.760440024 -0.022465 199 68 SH20035 20035 YBR186W spliced 28.850608 80.091719 54.4711635 1.736166652 0.018375 199 69 SH7848 7848 snoRNA cluster1 snR74/intergenic 28.439748 106.389843 28.439748 78.950095 53.6949215 1.729933212 0.005723 199 70 SH2588 2588 Pro2 3' flank 28.144272 75.514541 51.8294065 1.714576236 0.03059 199 71 SH6430 6430 snR45 5' - 12 -4 12 39.27587 103.089194 71.182532 1.852373432 -0.078759 199 72 SH2806 2806 Pro6 3' flank 28.270455 74.568063 51.419259 1.711125814 0.051647 199 73 SH9788 9788 RUF4 RUF4 716 738 31.799684 99.147843 65.4737635 1.816067305 -0.17562 199 74 SH17560 17560 YJL189W_10_75932_76473_INTRON_7_392 intron 25.574047 99.196558 25.574047 74.622511 50.098279 1.699822807 -0.14145 199 75 SH11013 11013 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1951 1966 1687.556648 1328.682598 1508.119623 3.178435791 0.175471 199 76 SH9526 9526 RUF3 RUF3 16 30 30.125505 82.322381 56.223943 1.7499213 0.071394 199 77 SH7291 7291 snR66 5' 26.050165 71.896236 48.9732005 1.689958487 -0.070212 199 78 SH13839 13839 MT COB Cytbi2 25.843696 95.623101 25.843696 70.779405 48.3115505 1.684050976 -0.070513 199 79 SH3061 3061 Ser3 tRNA 1 13 254.179629 386.578856 320.3792425 2.50566437 -0.319098 199 80 SH6847 6847 snR52 3' 37.231903 101.575763 69.403833 1.841383456 -0.092225 199 81 SH425 425 Asp1 5' flank 27.141225 76.329715 51.73547 1.713788399 -0.048616 199 82 SH432 432 Asp1 5' flank - tRNA2 5' flank 2 27.154272 76.682507 51.9183895 1.715321212 -0.052249 199 83 SH17045 17045 YGR214W_7_920570_921783_INTRON_91_545 exon/intron 29.6494 108.331476 29.6494 79.682076 54.665738 1.737715216 0.074967 199 84 SH6745 6745 snR50 5' 31.470719 90.290767 60.880743 1.784479944 -0.013065 199 85 SH11620 11620 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4986 5003 350.01635 226.291656 288.154003 2.459624657 0.954009 199 86 SH17154 17154 YHR012W_8_129473_130440_INTRON_49_167 intron 26.999335 98.007252 26.999335 72.007917 49.503626 1.694637011 -0.00278 199 87 SH17384 17384 YIL069C_9_232366_231550_INTRON_4_412 5' exon 28.586372 111.38124 28.586372 83.794868 56.19062 1.749663824 -0.044216 199 88 SH7774 7774 snoRNA cluster1 intergenic 43.222503 144.482916 43.222503 102.260413 72.741458 1.861782002 0.018457 199 89 SH10502 10502 RUF8 RUF8 436 452 29.588843 81.040659 55.314751 1.742840962 0.054188 199 90 SH439 439 Asp1 tRNA 16 28 591.193429 877.778216 734.4858225 2.865983417 -0.551755 199 91 SH2124 2124 Met1 tRNA 6 22 166.847151 213.914929 190.38104 2.279623695 0.131941 199 92 SH9466 9466 RUF2 RUF2 171 187 31.186385 116.372499 73.779442 1.867935366 -0.518505 199 93 SH10036 10036 RUF6 RUF6 26 43 26.60176 92.239081 59.4204205 1.773935721 -0.275916 199 94 SH1797 1797 Leu8 tRNA 11 25 812.685704 1108.485093 960.5853985 2.982535981 -0.503413 199 95 SH20654 20654 YIL018W spliced 28.0621 99.435327 63.7487135 1.804471425 -0.315738 199 96 SH4676 4676 snR4 5' 30.628212 112.519617 71.5739145 1.85475477 -0.464612 199 97 SH13253 13253 MT COX1 COX1-ai4 27.096388 100.112782 27.096388 74.016394 50.556391 1.703776064 -0.022269 199 98 SH2618 2618 Pro3 tRNA-intron 41 58 25.367098 75.078751 50.2229245 1.700901998 -0.162946 199 99 SH767 767 Gln4 3' flank 34.537372 83.029981 58.7836765 1.769256745 0.241075 199 100 SH15431 15431 YBL072C_2_89435_88518_INTRON_1_308 intron 28.401914 113.43487 28.401914 86.032956 57.217435 1.757528385 -0.082804 199 101 SH15143 15143 MT tRNA Thr1 reverse complement 5' 26.805968 88.948377 26.805968 63.142409 44.9741885 1.652963336 0.111022 199 102 SH8616 8616 snR19 / U1 RNA U1 576 592 30.619082 78.875246 54.747164 1.738361627 0.145792 199 103 SH20366 20366 YER133W spliced 29.470763 87.765158 58.6179605 1.768030704 -0.057056 199 104 SH12160 12160 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7686 7705 29.218084 80.67848 54.948282 1.739954118 0.034914 200 2 SH16864 16864 YGL187C_7_150529_149708_INTRON_1_342 intron 38.492904 147.82111 38.492904 110.328206 74.410555 1.871634544 -0.234892 200 3 SH14660 14660 MT 21S rRNA 21S rRNA4 29.448311 96.893567 29.448311 68.445256 48.9467835 1.689724158 0.213118 200 4 SH21485 21485 copy of SH1851 437.17097 647.088306 542.129638 2.734103151 -0.456834 200 5 SH18339 18339 YML124C_13_23684_22049_INTRON_26_323 intron 65.026799 175.623782 65.026799 111.596983 88.311891 1.946019184 0.216617 200 6 SH15624 15624 YBR181C_2_592732_591670_INTRON_7_358 intron 40.139725 132.322712 40.139725 93.182987 66.661356 1.823874144 0.147528 200 7 SH2208 2208 Phe1 5' flank 35.369824 90.188319 62.7790715 1.797814888 0.107654 200 8 SH2167 2167 Met2 5' flank 26.421011 79.536027 52.978519 1.724099814 -0.140408 200 9 SH19715 19715 Negative Control 27.927621 83.643487 55.785554 1.74652175 -0.086333 200 10 SH14828 14828 "MT tRNAs (Lys, Arg1, Gly)" 3' 26.383087 97.787467 26.383087 72.40438 49.3937335 1.693671854 -0.052514 200 11 SH1012 1012 Gly2 tRNA 51 63 41.828731 99.214362 70.5215465 1.848321828 0.052076 200 12 SH10590 10590 RUF8 RUF8 876 893 27.227266 70.941058 49.084162 1.690941381 0.027733 200 13 SH14980 14980 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.343873 94.985168 25.343873 70.641295 47.992584 1.681174134 -0.10625 200 14 SH4828 4828 snR8 5' 30.953648 78.374882 54.664265 1.737703513 0.17264 200 15 SH21023 21023 YMR079W spliced 30.249066 84.586706 57.417886 1.759047199 0.034896 200 16 SH11403 11403 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3901 3916 846.446561 579.157481 712.802021 2.852968922 0.573914 200 17 SH558 558 Cys1 3' flank 29.179624 76.666801 52.9232125 1.723646198 0.083497 200 18 SH14038 14038 MT COB Cytbi4 27.118385 94.354618 27.118385 68.236233 47.677309 1.678311735 0.057318 200 19 SH7258 7258 snR65 snR65 66 83 28.427891 81.520083 54.973987 1.740157235 -0.027135 200 20 SH1709 1709 Leu6 3' flank 29.682636 81.633282 55.657959 1.745527277 0.052856 200 21 SH17312 17312 YHR203C_8_505526_504472_INTRON_15_283 intron 27.045376 106.053826 27.045376 80.00845 53.526913 1.728572198 -0.10233 200 22 SH6735 6735 snR49 3' 34.2126 84.943158 59.577879 1.775085038 0.193188 200 23 SH19983 19983 YBL091C-A spliced 37.140429 93.665582 65.4030055 1.815597706 0.072583 200 24 SH13147 13147 MT COX1 intronic 30.847246 114.948424 30.847246 85.101178 57.974212 1.763234854 0.051725 200 25 SH9850 9850 RUF5-1 RUF5-1 56 73 29.339484 89.951314 59.645399 1.775576948 -0.101093 200 26 SH17109 17109 YHR001W-A_8_107819_108115_INTRON_7_69 intron 27.420501 101.77729 27.420501 75.356789 51.388645 1.710867166 -0.016592 200 27 SH13141 13141 MT COX1 intronic 29.68904 114.964045 29.68904 86.275005 57.9820225 1.76329336 -0.020688 200 28 SH1994 1994 Lys3 5' flank 31.689425 87.714926 59.7021755 1.775990157 0.040978 200 29 SH6384 6384 snR43 snR43 161 181 26.693104 72.135088 49.414096 1.693850855 -0.026441 200 30 SH17940 17940 YLR093C_12_327416_326514_INTRON_17_157 3' exon 26.490569 113.58235 26.490569 88.091781 57.291175 1.758087729 -0.237748 200 31 SH410 410 Asn1 3' flank 31.364805 102.411428 66.8881165 1.825348967 -0.253155 200 32 SH14124 14124 MT COB intronic 27.162183 98.687383 27.162183 72.5252 49.8436915 1.697610199 0.001932 200 33 SH4107 4107 SRP RNA SRP RNA 426 438 33.644656 89.867848 61.756252 1.790680931 0.072142 200 34 SH15051 15051 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.862402 106.171099 25.862402 81.308697 53.5855495 1.729047689 -0.202742 200 35 SH15773 15773 YDL012C_4_431513_431104_INTRON_46_131 5' exon 29.739877 119.277575 29.739877 90.537698 60.1387875 1.779154668 -0.093003 200 36 SH12391 12391 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.113978 105.293643 30.113978 76.179665 53.1468215 1.725477296 0.149266 200 37 SH13136 13136 MT COX1 COX1ai3 26.346758 99.632764 26.346758 74.286006 50.316382 1.701709406 -0.079787 200 38 SH13816 13816 MT COB Cytbi2 26.887154 99.787532 26.887154 73.900378 50.393766 1.702376815 -0.035692 200 39 SH10341 10341 RUF7 RUF7 316 337 27.239138 78.932512 53.085825 1.724978571 -0.075324 200 40 SH16241 16241 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.802547 111.355172 29.802547 82.552625 56.177586 1.749563073 0.04924 200 41 SH19299 19299 YPL198W_16_173151_174701_INTRON_12_420 exon/intron 32.399105 119.721711 32.399105 88.322606 60.3608555 1.780755386 0.059941 200 42 SH18720 18720 YNL130C_14_381156_379555_INTRON_30_470 intron/exon 30.013355 107.038944 30.013355 78.025589 54.019472 1.732550335 0.118988 200 43 SH19758 19758 Negative Control 29.497895 87.206121 58.352008 1.766055806 -0.045939 200 44 SH17790 17790 YKL186C_11_93537_92746_INTRON_71_233 intron 35.766585 131.171351 35.766585 96.404766 66.0856755 1.820107334 -0.018167 200 45 SH6114 6114 snR39B 5' 25.891321 75.982079 50.9367 1.707030805 -0.13503 200 46 SH869 869 Glu2 3' flank 27.281647 73.314199 50.297923 1.701550052 0 200 47 SH7751 7751 snoRNA cluster1 snR76 711.046353 1635.852769 711.046353 925.806416 818.4263845 2.912979622 -0.394846 200 48 SH11125 11125 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2511 2527 2166.129404 2019.452552 2092.790978 3.320725854 -0.155351 200 49 SH19209 19209 YPL081W_16_404945_406039_INTRON_8_508 intron 26.524817 112.791549 26.524817 87.266732 56.8957745 1.755080014 -0.225892 200 50 SH10109 10109 RUF6 RUF6 391 408 26.464087 77.002678 51.7333825 1.713770875 -0.105695 200 51 SH20738 20738 YJL191W spliced 31.718833 83.953554 57.8361935 1.762199702 0.110021 200 52 SH10017 10017 RUF6 5' 51.968667 114.755296 83.3619815 1.920968029 -0.051092 200 53 SH1334 1334 Ile3 tRNA-intron 51 66 26.37868 76.45786 51.41827 1.71111746 -0.105107 200 54 SH21902 21902 copy of SH19202 25.024531 72.240935 48.632733 1.686928676 -0.152157 200 55 SH6527 6527 snR46 snR46 126 143 36.842117 110.379899 73.611008 1.866942765 -0.272336 200 56 SH10865 10865 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1211 1227 108.181912 184.154252 146.168082 2.164852548 -0.132067 200 57 SH2043 2043 Lys3 3' flank 28.486204 83.925115 56.2056595 1.749780048 -0.052385 200 58 SH4955 4955 snR9 181-187 + 3' 181 25.664565 80.722957 53.193761 1.725860698 -0.21005 200 59 SH21723 21723 copy of SH11713 49.72524 96.270552 72.997896 1.863310343 0.261008 200 60 SH6849 6849 snR52 3' 25.875308 79.934562 52.904935 1.723496185 -0.184883 200 61 SH20970 20970 YML034W spliced 28.984393 88.877866 58.9311295 1.770344765 -0.098818 200 62 SH1806 1806 Leu8 tRNA-intron/exon 56 72 29.457239 76.026999 52.742119 1.722157574 0.109729 200 63 SH12988 12988 MT COX1 COX1ai2 27.407496 106.638682 27.407496 80.231186 53.819341 1.730938376 -0.080053 200 64 SH6223 6223 snR40 3' 27.70111 73.203695 50.4524025 1.702881852 0.030832 200 65 SH12665 12665 MT_15S MT_15S 27.794874 104.053406 27.794874 77.258532 52.526703 1.720380142 -0.015808 200 66 SH6907 6907 snR56 3' 27.493034 77.37459 52.433812 1.719611433 -0.037884 200 67 SH17824 17824 YKR057W_11_551293_551878_INTRON_25_346 intron 29.143813 117.339142 29.143813 89.195329 59.169571 1.772098421 -0.096993 200 68 SH1142 1142 His1 5' flank 27.395398 70.863466 49.129432 1.691341743 0.040638 200 69 SH12044 12044 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7106 7123 32.632452 90.675699 61.6540755 1.78996179 0.027859 200 70 SH20528 20528 YGR118W spliced 32.50286 89.801343 61.1521015 1.786411386 0.038534 200 71 SH11405 11405 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3911 3926 5065.072449 3474.012336 4269.542393 3.63038133 0.093139 200 72 SH3798 3798 RNaseP 5' flank 37.598167 94.304651 65.951409 1.819224078 0.06903 200 73 SH20057 20057 YBR255C-A spliced 26.373557 81.838169 54.105863 1.733244329 -0.172364 200 74 SH15153 15153 MT tRNA Thr1 reverse complement 3' 28.008908 98.308022 28.008908 71.299114 49.654011 1.695954336 0.077409 200 75 SH4707 4707 snR4 snR4 71 83 42.240567 90.567172 66.4038695 1.822193387 0.24823 200 76 SH11763 11763 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5701 5718 267.951744 306.632541 287.2921425 2.458323748 0.12343 200 77 SH7610 7610 snR189 snR189 121 137 28.26726 79.117749 53.6925045 1.729913662 -0.007863 200 78 SH18279 18279 YML056C_13_164176_162194_INTRON_461_868 3' exon 32.444976 115.04796 32.444976 83.602984 58.02398 1.763607515 0.146789 200 79 SH5469 5469 snR32 snR32 6 24 26.22073 85.607272 55.914001 1.74752057 -0.228395 200 80 SH11583 11583 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4801 4814 98.494233 149.796575 124.145404 2.093930646 0.11716 200 81 SH10562 10562 RUF8 RUF8 736 752 31.063862 74.434817 52.7493395 1.722217026 0.230979 200 82 SH17954 17954 YLR185W_12_522665_523290_INTRON_8_366 intron 31.898988 124.264011 31.898988 93.365023 62.6320055 1.796796318 -0.050922 200 83 SH7515 7515 snR79 5' 31.940836 90.907908 61.424372 1.788340725 -0.003757 200 84 SH2251 2251 Phe1 3' flank 29.217315 84.033243 56.625279 1.753010355 -0.005926 200 85 SH2646 2646 Pro3 3' flank 28.541804 77.197685 52.8697445 1.723207212 0.034946 200 86 SH1416 1416 Leu1 3' flank 32.296241 96.019384 64.1578125 1.807249548 -0.09727 200 87 SH1216 1216 Ile1 tRNA 41 53 1660.252044 1218.536916 1439.39448 3.158179833 0.289549 200 88 SH21739 21739 copy of SH12549 27.723614 69.644545 48.6840795 1.687386963 0.080223 200 89 SH18064 18064 YLR344W_12_819312_820142_INTRON_20_466 exon/intron 28.005681 110.45447 28.005681 83.448789 55.727235 1.746067495 -0.078741 200 90 SH5403 5403 snR31 snR31 81 96 30.117729 74.87326 52.4954945 1.720122031 0.166819 200 91 SH11492 11492 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4346 4361 26726.76123 13453.2479 20090.00456 4.302980035 0.119094 200 92 SH17438 17438 YIL133C_9_99416_98527_INTRON_32_321 intron 40.052755 138.534336 40.052755 99.481581 69.767168 1.843651094 0.010832 200 93 SH2803 2803 Pro6 3' flank 26.551487 60.283532 43.4175095 1.637664908 0.140278 200 94 SH5158 5158 snR13 5' 32.211371 91.248018 61.7296945 1.790494128 0.001754 200 95 SH8905 8905 LSR1 / U2 RNA 1166-1175 + 3' 1166 27.53805 56.345976 41.942013 1.622649271 0.277115 200 96 SH11331 11331 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3541 3556 11385.43174 5884.225865 8634.828803 3.936253731 0.313433 200 97 SH13927 13927 MT COB Cytbi3 34.006017 125.557107 34.006017 92.55109 63.2785535 1.801256543 0.02153 200 98 SH21898 21898 copy of SH19003 27.244849 85.201524 56.2231865 1.749915456 -0.151448 200 99 SH1477 1477 Leu2 3' flank 38.901983 102.699574 70.8007785 1.850038033 -0.078818 200 100 SH10696 10696 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 366 384 28.460072 67.409595 47.9348335 1.680651223 0.162012 200 101 SH12620 12620 MT_15S MT_15S 31.425916 125.4988 31.425916 95.072884 63.2494 1.80105641 -0.100503 200 102 SH5855 5855 snR35 snR35 461 482 29.570771 87.107936 58.3393535 1.765961612 -0.040894 200 103 SH14365 14365 MT ORF9 and ORF10 (hypothetical) ORF9 27.363461 110.230956 27.363461 83.867495 55.615478 1.745195674 -0.127462 200 104 SH17218 17218 YHR041C_8_189855_189122_INTRON_15_115 exon/intron 29.598723 110.182455 29.598723 81.583732 55.5912275 1.745006264 0.04813 201 2 SH17969 17969 YLR185W_12_522665_523290_INTRON_8_366 intron 29.161063 118.408457 29.161063 90.247394 59.7042285 1.776005091 -0.11434 201 3 SH5775 5775 snR35 snR35 61 77 38.11459 93.892906 66.003748 1.819568598 0.089279 201 4 SH1308 1308 Ile3 5' flank 26.87978 65.896507 46.3881435 1.666406992 0.073779 201 5 SH415 415 Asn1 3' flank 39.32156 88.710455 64.0160075 1.806288585 0.231732 201 6 SH21148 21148 YNL246W spliced 28.154338 86.040874 57.097606 1.756617899 -0.099392 201 7 SH8760 8760 LSR1 / U2 RNA U2 441 457 27.880939 78.609761 53.24535 1.726281686 -0.027342 201 8 SH120 120 Arg1 5' flank 35.877623 94.901791 65.389707 1.815509391 0.01639 201 9 SH7982 7982 snoRNA cluster 2 snR57 40.044722 133.264791 40.044722 94.220069 67.1323955 1.826932144 0.122749 201 10 SH3527 3527 Tyr2 5' flank 23.956421 62.987708 43.4720645 1.638210265 -0.096557 201 11 SH15442 15442 YBL087C_2_60732_59815_INTRON_43_546 5' exon 28.61334 121.092365 28.61334 93.479025 61.0461825 1.785658511 -0.194145 201 12 SH18215 18215 YML025C_13_225365_224406_INTRON_28_126 intron 27.050437 106.007414 27.050437 79.956977 53.503707 1.728383873 -0.101333 201 13 SH14474 14474 MT 21S rRNA 21S rRNA3 27.305695 109.383247 27.305695 83.077552 55.1916235 1.741873169 -0.121969 201 14 SH19740 19740 Negative Control 29.581911 88.364452 58.9731815 1.770654558 -0.062545 201 15 SH8775 8775 LSR1 / U2 RNA U2 516 532 27.670341 75.691928 51.6811345 1.713332039 -0.003758 201 16 SH18094 18094 YLR367W_12_855877_857316_INTRON_698_1180 intron 25.938782 95.17528 25.938782 70.236498 48.08764 1.682033464 -0.056052 201 17 SH11339 11339 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3581 3598 142.349619 166.76008 154.5548495 2.189082637 0.361963 201 18 SH7324 7324 snR66 3' 29.045312 87.931735 58.4885235 1.767070658 -0.079452 201 19 SH6748 6748 snR50 5' 36.085957 113.895618 74.9907875 1.875007914 -0.354071 201 20 SH20867 20867 YLR093C spliced 26.996926 77.713082 52.355004 1.718958197 -0.076564 201 21 SH9407 9407 RUF1 3' 26.938595 69.376197 48.157396 1.682662995 0.02861 201 22 SH6663 6663 snR48 3' 35.741589 97.456282 66.5989355 1.823467288 -0.040794 201 23 SH6279 6279 snR42 snR42 176 192 59.886401 120.252818 90.0696095 1.95457828 -0.006522 201 24 SH6464 6464 snR45 166-172 + 3' 166 29.310727 67.41752 48.3641235 1.684523321 0.218617 201 25 SH14835 14835 MT tRNA Asp 5' 27.431881 99.151211 27.431881 72.71933 50.0756055 1.699626209 0.018394 201 26 SH19331 19331 YPL218W_16_138697_139408_INTRON_29_167 intron/exon 29.709506 120.961003 29.709506 92.251497 60.9805015 1.785190992 -0.12338 201 27 SH3566 3566 Tyr2 3' flank 31.742752 83.759938 57.751345 1.761562103 0.114602 201 28 SH14672 14672 MT 21S rRNA 21S rRNA4 29.26005 106.869155 29.26005 78.609105 53.9345775 1.731867281 0.063634 201 29 SH15258 15258 MT 9S rRNA 5' 26.812593 103.565042 26.812593 77.752449 52.282521 1.718356521 -0.089981 201 30 SH1518 1518 Leu3 tRNA-intron/exon 61 76 52.289551 122.250128 87.2698395 1.940864177 -0.167774 201 31 SH12690 12690 MT ORF 8 (hypothetical) 5' 26.933206 100.874554 26.933206 74.941348 50.937277 1.707035725 -0.045819 201 32 SH1541 1541 Leu3 3' flank 29.257225 83.064742 56.1609835 1.749434705 0.008252 201 33 SH15306 15306 YAL001C_1_151163_147591_INTRON_71_160 intron 26.263102 97.604268 26.263102 72.341166 49.302134 1.692865718 -0.060454 201 34 SH11086 11086 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2316 2331 1822.119971 1384.697744 1603.408858 3.205044278 0.211794 201 35 SH6659 6659 snR48 3' 40.425327 96.422679 68.424003 1.835208478 0.082868 201 36 SH9214 9214 snR6 / U6 RNA 5' 27.958698 84.838734 56.398716 1.751269217 -0.098443 201 37 SH21726 21726 copy of SH11921 31.101533 71.691671 51.396602 1.710934407 0.270858 201 38 SH16924 16924 YGR001C_7_498029_497128_INTRON_36_97 5' exon 29.258985 117.03192 29.258985 88.772935 59.01596 1.770969476 -0.084371 201 39 SH18358 18358 YMR033W_13_337787_339276_INTRON_31_116 intron 31.660462 115.170626 31.660462 84.510164 58.085313 1.764066334 0.097333 201 40 SH6051 6051 snR37 snR37 171 190 31.776465 86.033593 58.905029 1.770152374 0.07459 201 41 SH14510 14510 MT 21S rRNA 21S rRNA3 27.461107 109.219623 27.461107 82.758516 55.1098115 1.741228926 -0.107423 201 42 SH17843 17843 YKR094C_11_618384_617630_INTRON_9_376 intron 27.763183 101.225977 27.763183 74.462794 51.1129885 1.708531274 0.018778 201 43 SH2769 2769 Pro6 5' flank 27.632907 79.551188 53.5920475 1.72910035 -0.056098 201 44 SH8842 8842 LSR1 / U2 RNA U2 851 866 953.964357 958.583164 956.2737605 2.980582239 -0.064495 201 45 SH20799 20799 YKL157W spliced 30.614167 85.862497 58.238332 1.765208928 0.027796 201 46 SH18429 18429 YMR142C_13_551206_550205_INTRON_5_406 intron 31.551131 115.530783 31.551131 84.979652 58.2653915 1.765410669 0.084133 201 47 SH6570 6570 snR47 5' 49.654206 117.604342 83.629274 1.922358327 -0.140639 201 48 SH15322 15322 YAL003W_1_142172_143158_INTRON_81_446 intron 28.520843 101.193018 28.520843 73.672175 51.096509 1.708391229 0.080363 201 49 SH7676 7676 snoRNA cluster1 snR78/intergenic 26.536007 98.932595 26.536007 73.396588 49.9662975 1.698677169 -0.054445 201 50 SH4305 4305 telomerase RNA telomerase 561 578 27.929915 81.611331 54.770623 1.738547681 -0.061553 201 51 SH1747 1747 Leu7 tRNA 31 47 25.922708 75.635249 50.7789785 1.70568396 -0.128307 201 52 SH13827 13827 MT COB Cytbi2 40.341196 137.693334 40.341196 98.352138 69.346667 1.841025592 0.040287 201 53 SH10510 10510 RUF8 RUF8 476 497 25.144616 72.138284 48.64145 1.687006513 -0.141573 201 54 SH6405 6405 snR43 3' 29.845457 76.867438 53.3564475 1.727186906 0.123391 201 55 SH5269 5269 snR30 snR30 196 213 30.176318 84.274057 57.2251875 1.757587224 0.037402 201 56 SH17948 17948 YLR128W_12_398531_399434_INTRON_4_97 intron 26.103476 105.556473 26.103476 80.452997 53.2782365 1.726549841 -0.174667 201 57 SH12551 12551 MT_15S 5' 28.361769 104.756584 28.361769 77.394815 52.878292 1.723277419 0.02047 201 58 SH12435 12435 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.600831 93.735521 25.600831 69.13469 47.3677605 1.675482852 -0.066136 201 59 SH11178 11178 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2776 2789 49.651704 104.654798 77.153251 1.887354231 0.091731 201 60 SH19184 19184 YPL079W_16_406631_407534_INTRON_12_432 intron 28.122899 104.295162 28.122899 77.172263 52.647581 1.721378421 0.007417 201 61 SH3590 3590 Val1 5' flank 26.650667 78.983864 52.8172655 1.722775913 -0.117127 201 62 SH8934 8934 snR17a / U3a 5' 29.08391 73.018862 51.051386 1.708007537 0.126117 201 63 SH5261 5261 snR30 snR30 156 170 31.375798 88.771932 60.073865 1.778685574 0.009136 201 64 SH3376 3376 Thr4 5' flank 29.28015 71.335766 50.307958 1.70163669 0.162135 201 65 SH18803 18803 YNL301C_14_64561_63569_INTRON_113_544 intron 31.656889 120.644401 31.656889 89.987512 60.8222005 1.784062129 0.000033 201 66 SH226 226 Arg3 5 'flank - tRNA 5 5' flank 5 26.787406 75.819914 51.30366 1.710148349 -0.067456 201 67 SH14231 14231 MT ATP9 3' 30.73305 119.409662 30.73305 89.676612 60.204831 1.779631342 -0.034253 201 68 SH20604 20604 YHR077C spliced 41.441025 96.811173 69.126099 1.839642049 0.094991 201 69 SH6623 6623 snR48 5' 28.002658 86.884768 57.443713 1.759242504 -0.119342 201 70 SH9443 9443 RUF2 RUF2 56 70 28.274286 84.710752 56.492519 1.75199094 -0.075783 201 71 SH19134 19134 YPL075W_16_412249_415357_INTRON_9_759 intron 30.918486 105.401507 30.918486 75.483021 53.2007535 1.725917783 0.20814 201 72 SH4957 4957 snR9 3' 26.699844 85.272677 55.9862605 1.748081461 -0.190357 201 73 SH2910 2910 Pro8 tRNA 71 83 108.124087 187.923459 148.023773 2.17033147 -0.167424 201 74 SH3622 3622 Val1 3' flank 28.401229 83.471927 55.936578 1.747695894 -0.052592 201 75 SH21382 21382 Lys3_4 spliced 29.696107 80.992863 55.344485 1.743074351 0.061597 201 76 SH7983 7983 snoRNA cluster 2 snR57 33.335981 120.410324 33.335981 88.074343 60.705162 1.783225622 0.102449 201 77 SH1557 1557 Leu4 5' flank 26.58081 69.455921 48.0183655 1.681407373 0.001759 201 78 SH15576 15576 YBR084C-A_2_415219_414144_INTRON_3_508 intron 47.120812 159.663767 47.120812 113.542955 80.3318835 1.90488795 -0.117393 201 79 SH6535 6535 snR46 snR46 166 183 26.73634 73.454529 50.0954345 1.699798148 -0.040718 201 80 SH11803 11803 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5901 5916 137.259723 168.090062 152.6748925 2.183767623 0.305238 201 81 SH16052 16052 YDL191W_4_117665_118518_INTRON_4_494 intron 26.720019 104.783247 26.720019 79.063228 52.8916235 1.723386898 -0.113235 201 82 SH2983 2983 Ser1 3' flank 27.290766 80.873462 54.082114 1.733053659 -0.096078 201 83 SH9537 9537 RUF3 RUF3 71 90 29.561371 74.896806 52.2290885 1.717912447 0.131373 201 84 SH887 887 Glu3 5' flank 29.132474 84.742224 56.937349 1.755397243 -0.019817 201 85 SH10274 10274 RUF7 5' 28.633545 83.941741 56.287643 1.750413063 -0.042862 201 86 SH21808 21808 copy of SH15283 32.899664 89.030789 60.9652265 1.785082192 0.068106 201 87 SH19571 19571 AEP2/ATP13 0.6 28.511115 80.357043 54.434079 1.735870879 -0.00724 201 88 SH207 207 Arg2 3' flank 29.870931 88.369216 59.1200735 1.771734965 -0.049615 201 89 SH13990 13990 MT COB intronic 28.784198 101.853351 28.784198 74.069153 51.4266755 1.71118845 0.092301 201 90 SH8553 8553 snR19 / U1 RNA U1 261 277 30.737121 77.381511 54.059316 1.732870546 0.172185 201 91 SH20462 20462 YGL183C spliced 32.313837 84.48502 58.3994285 1.766408597 0.125133 201 92 SH19161 19161 YPL075W_16_412249_415357_INTRON_9_759 intron 29.384671 119.94149 29.384671 91.556819 60.470745 1.781545319 -0.126401 201 93 SH3996 3996 RNase MRP 3' 26.448279 65.271101 45.85969 1.661431115 0.052218 201 94 SH2533 2533 Pro2 5' flank 25.429518 74.450766 49.940142 1.698449773 -0.150153 201 95 SH16005 16005 YDL137W_4_216158_217074_INTRON_1_332 intron 42.903679 138.242417 42.903679 96.338738 69.6212085 1.842741558 0.13362 201 96 SH2580 2580 Pro2 3' flank 26.146972 78.508968 52.32797 1.718733887 -0.147501 201 97 SH10190 10190 RUF6 RUF6 796 812 36.65318 82.968638 59.810909 1.776780403 0.30755 201 98 SH15004 15004 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.146385 89.805049 27.146385 63.658664 45.4025245 1.657080001 0.126335 201 99 SH8718 8718 LSR1 / U2 RNA U2 231 247 30.092448 74.291549 52.1919985 1.717603927 0.173046 201 100 SH13327 13327 MT COX1 COX1-ai5a 27.476849 101.24731 27.476849 74.770461 51.123655 1.708621895 -0.005143 201 101 SH1639 1639 Leu5 tRNA-intron/exon 61 77 33.770448 91.908434 62.839441 1.798232313 0.029738 201 102 SH18423 18423 YMR133W_13_536206_537608_INTRON_1243_1358 3' exon 29.502484 116.949458 29.502484 88.446974 58.974729 1.770665954 -0.067587 201 103 SH8205 8205 snoRNA cluster 3; intergenic/snR51 29.550916 96.815523 29.550916 68.264607 48.9077615 1.689377786 0.222352 201 104 SH5407 5407 snR31 snR31 101 120 29.323845 78.126248 53.7250465 1.7301768 0.073907 202 2 SH6690 6690 snR49 5' 27.906558 79.517607 53.7120825 1.730071991 -0.037108 202 3 SH12502 12502 MT_tRNA Pro 3' 29.94255 121.073526 29.94255 92.130976 61.036763 1.785591493 -0.110899 202 4 SH12327 12327 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.558731 109.997582 28.558731 82.438851 55.498791 1.744283522 -0.029704 202 5 SH15620 15620 YBR181C_2_592732_591670_INTRON_7_358 intron 29.453097 121.433366 29.453097 92.980269 61.216683 1.786869794 -0.147154 202 6 SH11264 11264 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S/ITS2 3206 3225 27.217988 63.727 45.472494 1.657748774 0.130168 202 7 SH13562 13562 MT COX1 Exon 6 29.110441 105.14979 29.110441 77.039349 53.074895 1.724889144 0.074171 202 8 SH9842 9842 RUF5-1 RUF5-1 16 37 26.470041 80.769502 53.6197715 1.729324959 -0.152323 202 9 SH19671 19671 SIR1 2.4 26.001053 74.777943 50.389498 1.702340032 -0.111557 202 10 SH5356 5356 snR30 3' 44.871946 85.962709 65.4173275 1.815692798 0.405576 202 11 SH9983 9983 RUF5-1 RUF5-1 721 743 30.723476 85.023442 57.873459 1.76247944 0.047758 202 12 SH11233 11233 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3051 3069 19745.55222 15210.43947 17477.99584 4.242491632 -0.470106 202 13 SH7125 7125 snR63 snR63 131 147 42.64241 95.971795 69.3071025 1.840777743 0.136465 202 14 SH16979 16979 YGR034W_7_555923_556666_INTRON_20_496 intron 33.924385 105.683956 33.924385 72.759571 53.341978 1.727069116 0.419745 202 15 SH5762 5762 snR35 5' - 12 -4 12 36.399238 96.669057 66.5341475 1.823044597 -0.00874 202 16 SH135 135 Arg1 51-65 51 65 39.198476 95.325343 67.2619095 1.827769192 0.08112 202 17 SH12384 12384 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.724486 111.313322 30.724486 81.588836 56.156661 1.749401277 0.11159 202 18 SH7554 7554 snR79 3' 31.053711 83.886296 57.4700035 1.759441224 0.082897 202 19 SH19536 19536 CBP1 1.2 28.894659 76.8667 52.8806795 1.723297027 0.062399 202 20 SH10355 10355 RUF7 RUF7 386 400 40.742507 98.050299 69.396403 1.84133696 0.054772 202 21 SH12754 12754 MT COX1 COX1ai1 27.104499 93.203583 27.104499 67.099084 47.1017915 1.673037426 0.072458 202 22 SH4191 4191 telomerase RNA 5' - 8 8 29.493135 85.989649 57.741392 1.761487249 -0.024424 202 23 SH5253 5253 snR30 snR30 116 130 32.028733 86.579751 59.304242 1.773085759 0.075384 202 24 SH147 147 Arg1 3' flank 27.644579 90.145739 58.895159 1.770079599 -0.184075 202 25 SH13522 13522 MT COX1 intronic 31.146776 125.276848 31.146776 95.130072 63.138424 1.800293737 -0.10935 202 26 SH9332 9332 RUF1 RUF1 236 253 29.433093 79.973756 54.7034245 1.738014515 0.057512 202 27 SH11590 11590 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4836 4851 35.886712 95.349709 65.6182105 1.817024382 0.007045 202 28 SH8328 8328 snoRNA cluster4 intergenic 28.999905 102.298224 28.999905 74.298319 51.649112 1.713062859 0.103275 202 29 SH9088 9088 snR14 / U4 RNA U4 56 75 26.900544 72.552116 49.72633 1.696586408 -0.017065 202 30 SH19897 19897 snR17A spliced 27.029653 78.440029 52.734841 1.722097641 -0.083604 202 31 SH18914 18914 YOL120C_15_94401_93394_INTRON_113_559 intron/exon 27.148714 101.673755 27.148714 75.525041 51.3368775 1.71042945 -0.037915 202 32 SH18305 18305 YML073C_13_124172_123227_INTRON_16_430 intron 29.194853 125.576836 29.194853 97.381983 63.288418 1.80132424 -0.230494 202 33 SH2845 2845 Pro7 tRNA-exon/intron 31 45 32.827926 77.273593 55.0507595 1.740763315 0.284283 202 34 SH17883 17883 YLR048W_12_242233_243350_INTRON_91_449 intron 45.430632 153.651022 45.430632 109.22039 77.325511 1.888322799 -0.072392 202 35 SH8978 8978 snR17a / U3a U3a 176 194 29.655763 80.700519 55.178141 1.741767065 0.062656 202 36 SH12204 12204 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7906 7921 30.453797 89.044811 59.749304 1.776332851 -0.035532 202 37 SH8817 8817 LSR1 / U2 RNA U2 726 743 28.741614 87.865733 58.3036735 1.765695919 -0.092358 202 38 SH12472 12472 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 4720.554292 7878.075521 4720.554292 3158.521229 3939.537761 3.595445268 0.152249 202 39 SH15156 15156 MT tRNA Val 5' 26.292281 98.743585 26.292281 73.451304 49.8717925 1.697854978 -0.07293 202 40 SH20567 20567 YHR010W spliced 30.883667 88.822955 59.853311 1.77708818 -0.012913 202 41 SH19900 19900 snR17B spliced 29.068758 80.416043 54.7424005 1.738323838 0.028522 202 42 SH21706 21706 copy of SH11081 8775.66899 6513.005266 7644.337128 3.883339832 -0.186434 202 43 SH5531 5531 snR33 5' 27.49083 76.074579 51.7827045 1.714184729 -0.02107 202 44 SH14576 14576 MT 21S rRNA intronic 27.162636 98.9469 27.162636 72.784264 49.97345 1.698739333 -0.001458 202 45 SH20773 20773 YKL006C-A spliced 30.950371 94.986472 62.9684215 1.799122806 -0.113811 202 46 SH13330 13330 MT COX1 COX1-ai5a 25.519419 92.582899 25.519419 68.06348 46.7914495 1.670166499 -0.057178 202 47 SH10594 10594 RUF8 RUF8 896 908 33.691417 93.76052 63.7259685 1.804316445 -0.012779 202 48 SH3383 3383 Thr4 tRNA 1 15 32.127985 90.750393 61.439189 1.788445474 0.006745 202 49 SH21304 21304 YPL218W spliced 33.394944 98.516474 65.955709 1.819252393 -0.12081 202 50 SH2053 2053 Lys4 5' flank 26.985028 79.336176 53.160602 1.72558989 -0.098091 202 51 SH17115 17115 YHR010W_8_126513_127484_INTRON_32_592 5' exon 28.859614 113.900007 28.859614 86.040393 57.4500035 1.759290059 -0.054399 202 52 SH8294 8294 snoRNA cluster4 intergenic 28.275216 105.038672 28.275216 77.763456 53.019336 1.724434284 0.009954 202 53 SH3210 3210 Thr1 5' flank 30.161964 94.09247 62.127217 1.7932819 -0.133717 202 54 SH1428 1428 Leu2 5' flank 29.864066 85.815506 57.839786 1.762226677 -0.004559 202 55 SH2839 2839 Pro7 tRNA 1 13 193.821069 314.780241 254.300655 2.405347479 -0.324764 202 56 SH5159 5159 snR13 5' 30.244652 77.624916 53.934784 1.731868944 0.138608 202 57 SH18288 18288 YML067C_13_140214_139063_INTRON_32_124 intron/exon 30.578811 121.764713 30.578811 92.185902 61.3823565 1.788043557 -0.083679 202 58 SH4132 4132 SRP RNA SRP RNA 551 565 32.663987 87.231701 59.947844 1.777773568 0.090065 202 59 SH4562 4562 U3b (snR17b) U3b 366 382 28.181393 84.982313 56.581853 1.752677166 -0.085188 202 60 SH14224 14224 MT ATP9 ATP9 28.644823 109.042934 28.644823 81.398111 55.021467 1.740532166 -0.011312 202 61 SH13741 13741 MT COB Exon1 29.000931 113.277355 29.000931 85.276424 57.1386775 1.756930184 -0.034635 202 62 SH9498 9498 RUF2 3' 33.371176 86.093375 59.7322755 1.77620906 0.139053 202 63 SH3796 3796 RNaseP 5' flank 44.639854 104.430107 74.5349805 1.872360142 0.003527 202 64 SH4991 4991 snR10 5' - 5 -14 5 26.332571 70.777103 48.554837 1.686232501 -0.034393 202 65 SH21415 21415 Ser4 spliced 33.078094 88.843526 60.96081 1.785050729 0.078603 202 66 SH21022 21022 YMR079W spliced 32.848366 90.602712 61.725539 1.790464891 0.035131 202 67 SH3862 3862 RNaseP RNaseP 276 288 28.102247 82.312531 55.207389 1.741997208 -0.058529 202 68 SH9000 9000 snR17a / U3a U3a 286 303 32.269101 76.350467 54.309784 1.734878076 0.277259 202 69 SH7457 7457 snR71 5' 27.993559 77.563276 52.7784175 1.722456364 -0.006328 202 70 SH15319 15319 YAL003W_1_142172_143158_INTRON_81_446 intron 30.740596 111.552794 30.740596 81.812198 56.276397 1.750326285 0.108063 202 71 SH9363 9363 RUF1 RUF1 391 410 29.044145 75.161404 52.1027745 1.71686085 0.094584 202 72 SH21006 21006 YML094W spliced 26.936062 89.9034 58.419731 1.766559553 -0.226706 202 73 SH12708 12708 MT ORF 8 (hypothetical) ORF8 26.714939 97.759043 26.714939 72.044104 49.3795215 1.693546877 -0.023655 202 74 SH21183 21183 YOL047C spliced 26.33118 83.520321 54.9257505 1.739776 -0.195765 202 75 SH16481 16481 YER102W_5_362729_363698_INTRON_1_360 intron 28.156401 115.589627 28.156401 88.433226 58.2948135 1.765629917 -0.129851 202 76 SH1983 1983 Lys2 3' flank 32.163283 83.348361 57.755822 1.761595769 0.139837 202 77 SH2867 2867 Pro7 3' flank 29.592383 80.298545 54.945464 1.739931845 0.063624 202 78 SH15892 15892 YDL082W_4_308423_309387_INTRON_5_369 intron 27.199899 106.111687 27.199899 79.911788 53.5558435 1.728806864 -0.090385 202 79 SH10662 10662 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 196 214 110.403964 188.322731 149.3633475 2.174244038 -0.14629 202 80 SH21643 21643 copy of SH8353 37.134305 104.04054 70.5874225 1.848727324 -0.143838 202 81 SH16904 16904 YGL232W_7_62074_63001_INTRON_58_115 5' exon 28.868715 115.979935 28.868715 88.11122 58.4899675 1.76708138 -0.090769 202 82 SH200 200 Arg2 3' flank 29.372657 78.127041 53.749849 1.730377249 0.07703 202 83 SH6317 6317 snR42 3' 29.278266 78.190051 53.7341585 1.730250452 0.070158 202 84 SH4167 4167 SRP RNA 3' 29.862616 85.235933 57.5492745 1.760039853 0.005859 202 85 SH4339 4339 telomerase RNA telomerase 731 750 28.259332 78.739731 53.4995315 1.728349979 -0.003596 202 86 SH7396 7396 snR68 3' 28.335194 79.870975 54.1030845 1.733222026 -0.012827 202 87 SH6825 6825 snR52 snR52 31 48 28.825991 81.479191 55.152591 1.74156592 -0.00043 202 88 SH6041 6041 snR37 snR37 121 139 29.210603 85.587579 57.399091 1.758905015 -0.030057 202 89 SH2898 2898 Pro8 tRNA 11 28 31.519105 77.695519 54.607312 1.737250799 0.215466 202 90 SH17211 17211 YHR039C-A_8_187670_187164_INTRON_4_165 intron 26.621903 103.643367 26.621903 78.021464 52.3216835 1.718681709 -0.106887 202 91 SH21830 21830 copy of SH16330 28.298804 68.807626 48.553215 1.686217992 0.131371 202 92 SH6826 6826 snR52 snR52 36 55 27.520645 69.97477 48.7477075 1.687954197 0.061533 202 93 SH1979 1979 Lys2 3' flank 28.477218 94.615847 61.5465325 1.78920359 -0.219227 202 94 SH6311 6311 snR42 336-351 + 3' 336 41.268297 104.874152 73.0712245 1.863746385 -0.072388 202 95 SH20018 20018 YBR089C-A spliced 26.457764 96.045659 61.2517115 1.787118228 -0.340876 202 96 SH4472 4472 U3b (snR17b) 5' 39.149339 98.595657 68.872498 1.838045835 0.010512 202 97 SH4396 4396 telomerase RNA telomerase 1016 1037 26.233864 81.270072 53.751968 1.73039437 -0.175396 202 98 SH4893 4893 snR8 3' 27.287048 79.451375 53.3692115 1.727290786 -0.078573 202 99 SH12440 12440 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.524569 116.747131 32.524569 85.222562 58.8735655 1.769920338 0.120387 202 100 SH13041 13041 MT COX1 COX1ai2 26.533428 108.249605 26.533428 82.716177 54.6248025 1.73738988 -0.171661 202 101 SH5285 5285 snR30 snR30 276 292 29.233219 76.213466 52.7233425 1.722002935 0.092892 202 102 SH10459 10459 RUF8 RUF8 221 238 29.379264 80.324207 54.8517355 1.739190373 0.049686 202 103 SH3219 3219 Thr1 5' flank 29.239584 75.586921 52.4132525 1.719441111 0.101568 202 104 SH2593 2593 Pro3 5' flank 37.397081 107.158464 72.2777725 1.85900476 -0.198941 203 2 SH3645 3645 Val2 5' flank 26.27872 71.046748 48.662734 1.687196505 -0.041984 203 3 SH17067 17067 YGR214W_7_920570_921783_INTRON_91_545 intron 28.266794 97.824815 28.266794 70.558021 49.4124075 1.693836014 0.105086 203 4 SH14102 14102 MT COB Cytbi4 27.913164 92.812551 27.913164 65.899387 46.9062755 1.67123095 0.146386 203 5 SH18947 18947 YOL127W_15_80347_81189_INTRON_14_427 intron 30.067613 120.035095 30.067613 90.967482 60.5175475 1.78188132 -0.08566 203 6 SH13046 13046 MT COX1 COX1ai2 25.842177 99.899846 25.842177 75.057669 50.449923 1.702860508 -0.126943 203 7 SH20033 20033 YBR181C spliced 30.201076 86.523264 58.36217 1.766131431 -0.002246 203 8 SH21108 21108 YNL069C spliced 27.508015 80.143902 53.8259585 1.730991772 -0.072065 203 9 SH14694 14694 MT 21S rRNA 3' 42.015733 130.502392 42.015733 89.486659 65.751196 1.817903657 0.268596 203 10 SH21253 21253 YPL075W spliced 28.905303 92.916494 60.9108985 1.784695006 -0.17122 203 11 SH5180 5180 snR13 snR13 56 72 27.141078 73.924707 50.5328925 1.703574158 -0.017906 203 12 SH13262 13262 MT COX1 COX1-ai4 29.741535 118.526719 29.741535 89.785184 59.7633595 1.776435003 -0.080017 203 13 SH5566 5566 snR33 snR33 116 132 27.82747 64.819759 46.3236145 1.665802439 0.156316 203 14 SH3596 3596 Val1 5' flank 25.791644 72.357301 49.0744725 1.69085564 -0.095553 203 15 SH7988 7988 snoRNA cluster 2 snR57/intergenic 28.037713 103.974406 28.037713 76.936693 52.487203 1.72005343 0.004762 203 16 SH17848 17848 YKR094C_11_618384_617630_INTRON_9_376 intron/exon 27.042828 103.901296 27.042828 77.858468 52.450648 1.719750858 -0.075235 203 17 SH5027 5027 snR10 snR10 166 182 28.424135 64.829556 46.6268455 1.668636035 0.197027 203 18 SH6692 6692 snR49 5' - 3 -14 3 28.715935 78.778949 53.747442 1.7303578 0.026105 203 19 SH13390 13390 MT COX1 intronic 28.973367 109.790963 28.973367 81.817596 55.3954815 1.743474342 0.005029 203 20 SH10007 10007 RUF5-1 3' 31.686623 77.149016 54.4178195 1.735741136 0.232521 203 21 SH8684 8684 LSR1 / U2 RNA U2 61 77 27.443275 98.110227 62.776751 1.797798835 -0.324829 203 22 SH15335 15335 YAL030W_1_87288_87754_INTRON_103_215 exon/intron 30.000081 115.358648 30.000081 86.358567 58.179324 1.764768671 -0.008236 203 23 SH9913 9913 RUF5-1 RUF5-1 371 392 27.835454 75.36356 51.599507 1.712645552 0.011805 203 24 SH15255 15255 MT 9S rRNA 5' 27.934035 100.93296 27.934035 73.998925 50.96648 1.70728464 0.03659 203 25 SH18395 18395 YMR125W_13_517538_520445_INTRON_26_347 exon/intron 224.230529 485.924202 224.230529 262.693673 243.462101 2.386431366 0.15341 203 26 SH3230 3230 Thr1 tRNA 6 22 29.003971 78.654716 53.8293435 1.731019083 0.046491 203 27 SH9817 9817 RUF4 3' 26.259654 79.489433 52.8745435 1.723246631 -0.151364 203 28 SH14160 14160 MT COB intronic 35.471464 128.731116 35.471464 94.259652 64.865558 1.812014158 0.020446 203 29 SH13647 13647 MT ATP6 ATP6 26.827846 101.092086 26.827846 75.26424 51.046043 1.707962082 -0.057493 203 30 SH18802 18802 YNL301C_14_64561_63569_INTRON_113_544 intron 31.741779 122.460564 31.741779 91.718785 61.730282 1.790498261 -0.025862 203 31 SH14442 14442 MT 21S rRNA 21S rRNA3 27.197811 100.667125 27.197811 74.469314 50.8335625 1.706150547 -0.020928 203 32 SH10079 10079 RUF6 RUF6 241 257 29.291125 77.761688 53.5264065 1.728568088 0.076486 203 33 SH6880 6880 snR56 snR56 31 48 31.09402 80.231003 55.6625115 1.745562798 0.153554 203 34 SH14898 14898 MT tRNA Ile tRNA 26.170595 101.351377 26.170595 76.180782 51.1756885 1.709063694 -0.116875 203 35 SH11081 11081 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2291 2307 8705.912475 6365.687668 7535.800072 3.877129368 -0.160617 203 36 SH9638 9638 RUF4 5' 28.993787 87.38861 58.1911985 1.764857302 -0.072243 203 37 SH1674 1674 Leu6 5' flank 28.827346 71.869093 50.3482195 1.701984117 0.125235 203 38 SH18882 18882 YOL047C_15_242745_241612_INTRON_244_306 5' exon 32.637869 124.593033 32.637869 92.955164 62.7965165 1.797935553 -0.022416 203 39 SH10687 10687 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 321 338 36.400317 95.109593 65.754955 1.817928485 0.024311 203 40 SH21154 21154 YNL265C spliced 27.565216 80.350012 53.957614 1.732052737 -0.070723 203 41 SH18316 18316 YML085C_13_99400_97941_INTRON_26_141 5' exon 30.24257 126.339589 30.24257 97.097019 63.6697945 1.803933448 -0.178771 203 42 SH17296 17296 YHR141C_8_382752_381991_INTRON_5_445 intron 30.994674 120.95482 30.994674 90.960146 60.97741 1.785168974 -0.044892 203 43 SH20471 20471 YGL187C spliced 98.439879 139.142754 118.7913165 2.074784695 0.247082 203 44 SH12662 12662 MT_15S MT_15S 31.665444 117.785437 31.665444 87.119993 59.3927185 1.773733204 0.050493 203 45 SH1819 1819 Leu8 3' flank 26.668401 75.460971 51.064686 1.708120666 -0.071477 203 46 SH7186 7186 snR64 5' - 12 -4 12 35.047953 86.26745 60.6577015 1.78288595 0.190098 203 47 SH20280 20280 YDR450W spliced 27.956783 74.337822 51.1473025 1.708822734 0.03372 203 48 SH2778 2778 Pro6 5' flank 28.209121 74.843459 51.52629 1.712028873 0.043864 203 49 SH17506 17506 YJL136C_10_156971_156248_INTRON_25_484 intron 1821.999839 3709.611996 1821.999839 1888.612157 1855.305998 3.268415549 -0.276142 203 50 SH13736 13736 MT COB Exon1 29.29436 110.675031 29.29436 82.380671 55.8375155 1.746926086 0.018922 203 51 SH3045 3045 Ser3 5' flank 31.502167 73.09586 52.2990135 1.718493497 0.275553 203 52 SH12677 12677 MT tRNA Trp 5' / tRNA 28.825886 116.028282 28.825886 88.202396 58.514141 1.767260834 -0.094356 203 53 SH4583 4583 U3b (snR17b) 3' 26.039231 67.870878 46.9550545 1.671682349 -0.015732 203 54 SH143 143 Arg1 3' flank 31.941188 82.847842 57.394515 1.75887039 0.13988 203 55 SH3822 3822 RNaseP RNaseP 76 93 42.807358 93.486252 68.146805 1.833445499 0.193765 203 56 SH20195 20195 YDR005C spliced 27.837438 84.440807 56.1391225 1.74926562 -0.101926 203 57 SH1117 1117 Gly4 61-72 + 3' flank 61 30.82864 81.558051 56.1933455 1.749684889 0.116704 203 58 SH1894 1894 Lys1 5' flank 31.213704 87.383711 59.2987075 1.773045227 0.026586 203 59 SH19894 19894 snR17A spliced 26.79213 79.963149 53.3776395 1.727359364 -0.119489 203 60 SH12510 12510 MT_ORF6 + ORF7 (hypothetical) 5' 29.219205 103.749017 29.219205 75.529812 52.3745085 1.71911996 0.101011 203 61 SH7020 7020 snR60 3' 26.938816 76.395585 51.6672005 1.713214931 -0.06386 203 62 SH8539 8539 snR19 / U1 RNA U1 191 210 28.998009 78.427107 53.712558 1.730075836 0.049005 203 63 SH1556 1556 Leu4 5' flank 26.477889 67.562097 47.019993 1.67228256 0.020815 203 64 SH3118 3118 Ser4 5' flank - tRNA10 10 53.290227 111.10604 82.1981335 1.914861956 0.03572 203 65 SH17943 17943 YLR128W_12_398531_399434_INTRON_4_97 5' exon 28.399748 104.293529 28.399748 76.893781 52.6467645 1.721371686 0.029494 203 66 SH8450 8450 snoRNA cluster 5 snR128 39.627277 130.052595 39.627277 91.425318 65.5262975 1.816415629 0.176234 203 67 SH21166 21166 YNL302C spliced 28.208058 71.634054 49.921056 1.698283764 0.086556 203 68 SH9065 9065 snR14 / U4 RNA 5' 27.931126 76.511109 52.2211175 1.717846161 0.003139 203 69 SH11116 11116 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2466 2483 32.211833 89.249635 60.730734 1.78340853 0.03603 203 70 SH13655 13655 MT ATP6 ATP6 28.264573 101.738867 28.264573 74.474294 51.3694335 1.710704776 0.052514 203 71 SH13039 13039 MT COX1 COX1ai2 28.874829 107.789354 28.874829 79.914525 54.394677 1.735556402 0.022173 203 72 SH7013 7013 snR60 3' 5512.424619 5071.525554 5291.975087 3.723617791 -0.395886 203 73 SH11051 11051 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2141 2158 37.944643 83.4277 60.6861715 1.78308974 0.325943 203 74 SH20470 20470 YGL187C spliced 38.893034 87.246368 63.069701 1.799820772 0.25616 203 75 SH9678 9678 RUF4 RUF4 166 185 28.679281 80.440654 54.5599675 1.736874103 0.0028 203 76 SH5471 5471 snR32 snR32 16 32 28.605403 87.623383 58.114393 1.764283706 -0.094444 203 77 SH5086 5086 snR11 snR11 31 46 30.577134 83.031853 56.8044935 1.754382692 0.078035 203 78 SH18015 18015 YLR287C-A_12_713158_712537_INTRON_4_433 3' exon 30.285529 107.038729 30.285529 77.7532 54.0193645 1.732549471 0.139499 203 79 SH15162 15162 MT tRNA Val tRNA 27.893375 108.406647 27.893375 81.513272 54.7033235 1.738013713 -0.062816 203 80 SH20956 20956 YML024W spliced 60.478896 122.622111 91.5505035 1.961660737 -0.033672 203 81 SH13 13 Ala1 5' flank 28.43936 85.247543 56.8434515 1.75468044 -0.071139 203 82 SH2073 2073 Lys4 tRNA-exon/intron 31 48 28.785295 69.985485 49.38539 1.693598488 0.147909 203 83 SH8248 8248 snoRNA cluster4 5' 28.724009 102.19108 28.724009 74.467071 51.59554 1.712612162 0.082992 203 84 SH17447 17447 YIL148W_9_68708_69528_INTRON_9_442 exon/intron 28.23457 112.33381 28.23457 85.09924 56.666905 1.753329493 -0.083013 203 85 SH20661 20661 YIL052C spliced 47.904593 104.151675 76.028134 1.880974331 0.069439 203 86 SH2822 2822 Pro7 5' flank 27.991836 77.399713 52.6957745 1.721775792 -0.004331 203 87 SH14860 14860 MT tRNA Ser2; tRNA Arg2 tRNA Ser 28.620376 97.178821 28.620376 69.558445 49.0894105 1.690987817 0.142717 203 88 SH1046 1046 Gly3 5' flank 26.87816 82.079472 54.478816 1.73622766 -0.139602 203 89 SH6613 6613 snR47 3' 29.244849 75.042734 52.1437915 1.717202607 0.109141 203 90 SH7850 7850 snoRNA cluster1 snR74/intergenic 31.155838 139.255234 31.155838 109.099396 70.127617 1.845889081 -0.387331 203 91 SH13172 13172 MT COX1 intronic/exon4 28.287259 112.951078 28.287259 85.663819 56.975539 1.755688442 -0.08612 203 92 SH9129 9129 snR7 U5 RNA 5' 29.754088 93.331597 61.5428425 1.789177551 -0.13938 203 93 SH1498 1498 Leu3 5' flank 28.71574 80.648238 54.681989 1.737844303 0.002613 203 94 SH7695 7695 snoRNA cluster1 intergenic 32.638652 124.421187 32.638652 92.782535 62.7105935 1.797340911 -0.01862 203 95 SH17437 17437 YIL133C_9_99416_98527_INTRON_32_321 intron 47.389148 144.529314 47.389148 98.140166 72.764657 1.861920486 0.180753 203 96 SH17170 17170 YHR016C_8_138446_136872_INTRON_48_215 3' exon 25.594338 97.668456 25.594338 73.074118 49.334228 1.693148337 -0.119802 203 97 SH12850 12850 MT COX1 COX1ai1 26.665189 102.618571 26.665189 76.953382 51.8092855 1.714407603 -0.090502 203 98 SH1646 1646 Leu5 tRNA 96 113 36.38901 95.225904 65.807457 1.818275109 0.021564 203 99 SH2478 2478 Phe5 3' flank 30.557296 83.627841 57.0925685 1.756579582 0.066102 203 100 SH2690 2690 Pro4 3' flank 31.206927 86.311241 58.759084 1.769075017 0.045399 203 101 SH18269 18269 YML056C_13_164176_162194_INTRON_461_868 intron 29.208058 101.60391 29.208058 73.395852 51.301955 1.710133915 0.128986 203 102 SH17425 17425 YIL111W_9_155219_155762_INTRON_2_89 3' exon 64.686783 185.653535 64.686783 121.966752 93.3267675 1.970006224 0.043252 203 103 SH18519 18519 YMR225C_13_721402_720959_INTRON_59_205 5' exon 26.56233 97.319151 26.56233 71.756821 49.1595755 1.691608124 -0.030854 203 104 SH454 454 Asp1 3' flank 28.519032 80.057104 54.288068 1.734704386 -0.002973 204 2 SH15511 15511 YBR048W_2_332790_333771_INTRON_46_556 intron 30.959694 125.156304 30.959694 95.19661 63.078152 1.799878961 -0.116826 204 3 SH5940 5940 snR36 snR36 156 174 28.253843 89.290469 58.772156 1.769171623 -0.14015 204 4 SH9001 9001 snR17a / U3a U3a 291 306 38.022046 94.257722 66.139884 1.820463429 0.079281 204 5 SH8624 8624 snR19 / U1 RNA U1 616 632 32.423333 79.962974 56.1931535 1.749683405 0.21476 204 6 SH21721 21721 copy of SH11711 1390.694584 747.176253 1068.935419 3.028951467 0.822269 204 7 SH4035 4035 SRP RNA SRP RNA 66 82 33.312504 104.106733 68.7096185 1.837017537 -0.235001 204 8 SH8243 8243 snoRNA cluster4 5' 28.654172 105.199542 28.654172 77.54537 53.099771 1.725092648 0.03785 204 9 SH14712 14712 MT tRNA cys; tRNA his 5' 28.283879 106.440457 28.283879 79.156578 53.7202285 1.730137851 -0.007247 204 10 SH7738 7738 snoRNA cluster1 intergenic 28.002304 118.53984 28.002304 91.537536 59.76992 1.776482675 -0.190568 204 11 SH12279 12279 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.396672 131.590342 32.396672 100.19367 66.295171 1.821481895 -0.18103 204 12 SH6318 6318 snR42 3' 28.089654 90.372645 59.2311495 1.772550161 -0.166587 204 13 SH9439 9439 RUF2 RUF2 36 54 28.261069 102.18747 65.2242695 1.814409224 -0.348517 204 14 SH4785 4785 snR5 snR5 96 115 28.356128 71.61561 49.985869 1.698847247 0.096886 204 15 SH15440 15440 YBL072C_2_89435_88518_INTRON_1_308 3' exon 28.194909 119.394364 28.194909 92.199455 60.197182 1.779576161 -0.19254 204 16 SH6468 6468 snR45 3' 27.943834 63.660884 45.802359 1.660887846 0.181663 204 17 SH17520 17520 YJL136C_10_156971_156248_INTRON_25_484 intron 27.934591 113.35247 27.934591 86.417879 57.176235 1.757215554 -0.118533 204 18 SH6647 6647 snR48 snR48 61 78 25.984987 74.816489 50.400738 1.702436896 -0.113242 204 19 SH11894 11894 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6356 6373 376.375614 303.272411 339.8240125 2.531254064 0.571293 204 20 SH835 835 Glu2 5' flank 27.08985 72.517327 49.8035885 1.697260636 -0.003099 204 21 SH4602 4602 snR3 5' 27.484484 71.424708 49.454596 1.694206658 0.039321 204 22 SH17182 17182 YHR021C_8_148660_147862_INTRON_4_553 intron 32.28331 120.072632 32.28331 88.789322 60.536316 1.782015988 0.046996 204 23 SH1366 1366 Leu1 5' flank 29.968071 93.884239 61.926155 1.791874115 -0.138922 204 24 SH1228 1228 Ile1 3' flank 27.541203 74.127191 50.834197 1.706155968 0.007653 204 25 SH8691 8691 LSR1 / U2 RNA U2 96 115 26.906838 75.998796 51.452817 1.711409157 -0.06115 204 26 SH19914 19914 YAL003W spliced 30.451141 77.656592 54.0538665 1.732826765 0.151019 204 27 SH20434 20434 YGL076C spliced 36.748084 99.235811 67.9919475 1.832457481 -0.054915 204 28 SH6831 6831 snR52 snR52 61 80 28.290889 76.169456 52.2301725 1.71792146 0.031734 204 29 SH18835 18835 YNL302C_14_62942_61957_INTRON_21_571 intron 33.51939 127.143883 33.51939 94.624493 64.0719415 1.806667884 -0.03578 204 30 SH6232 6232 snR42 5' 29.245707 83.87598 56.5608435 1.752515878 -0.00222 204 31 SH11541 11541 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4591 4608 25841.37077 14455.30667 20148.33872 4.304239243 -0.038374 204 32 SH6508 6508 snR46 snR46 31 47 31.716301 87.837087 59.776694 1.776531892 0.03996 204 33 SH11978 11978 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6776 6792 308.698048 257.531908 283.114978 2.451962846 0.585521 204 34 SH3511 3511 Tyr1 3' flank 27.452592 74.636331 51.0444615 1.707948627 -0.005121 204 35 SH14478 14478 MT 21S rRNA 21S rRNA3 227.782872 486.516182 227.782872 259.73331 243.758091 2.38695904 0.19157 204 36 SH9348 9348 RUF1 RUF1 316 335 27.509671 77.872346 52.6910085 1.721736511 -0.043164 204 37 SH6515 6515 snR46 snR46 66 84 29.110376 75.235473 52.1729245 1.717445181 0.097889 204 38 SH7861 7861 snoRNA cluster1 intergenic 30.209468 101.548598 30.209468 72.33913 51.274299 1.709899732 0.207023 204 39 SH16557 16557 YER133W_5_432491_433954_INTRON_178_702 intron 27.151847 104.707191 27.151847 78.555344 52.8535955 1.723074537 -0.076576 204 40 SH8181 8181 snoRNA cluster 3; snR70 39.962827 129.17414 39.962827 90.211313 65.08707 1.813494722 0.210744 204 41 SH3573 3573 Tyr2 3' flank 31.820224 86.642137 59.2311805 1.772550388 0.065528 204 42 SH12836 12836 MT COX1 COX1ai1 28.246117 93.848947 28.246117 66.60283 47.4244735 1.676002518 0.159033 204 43 SH134 134 Arg1 46-61 46 61 33.577432 88.422311 60.9998715 1.78532892 0.103361 204 44 SH7105 7105 snR63 snR63 31 48 31.541017 92.073362 61.8071895 1.791038996 -0.040323 204 45 SH3694 3694 Val3 5' flank 28.943544 86.725598 57.834571 1.762187518 -0.062783 204 46 SH300 300 Arg4 3' flank 28.375344 91.649737 60.0125405 1.778242012 -0.174751 204 47 SH6602 6602 snR47 3' 28.005726 77.452733 52.7292295 1.722051425 -0.004082 204 48 SH7416 7416 snR69 5' - 2 -19 2 25.822163 70.517247 48.169705 1.682773987 -0.068558 204 49 SH761 761 Gln4 3' flank 30.762393 80.238265 55.500329 1.744295558 0.137437 204 50 SH15055 15055 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.665806 97.616996 26.665806 71.95119 49.308498 1.692921774 -0.025962 204 51 SH7494 7494 snR71 86-90 + 3' 86 31.37009 97.139921 64.2550055 1.807906965 -0.145699 204 52 SH10120 10120 RUF6 RUF6 446 462 28.821446 81.963703 55.3925745 1.74345155 -0.006663 204 53 SH10654 10654 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 156 174 68.967263 129.081078 99.0241705 1.995741213 0.001972 204 54 SH20541 20541 YGR214W spliced 27.504245 85.286665 56.395455 1.751244105 -0.134593 204 55 SH4998 4998 snR10 snR10 21 37 31.674492 93.615719 62.6451055 1.796887145 -0.062404 204 56 SH5354 5354 snR30 3' 27.944724 74.112341 51.0285325 1.707813079 0.035857 204 57 SH21680 21680 copy of SH10030 28.962419 78.731081 53.84675 1.731159496 0.042818 204 58 SH13620 13620 MT ATP6 ATP6 27.275621 107.175091 27.275621 80.89947 54.0875455 1.733097274 -0.097446 204 59 SH11486 11486 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4316 4332 103.214462 150.433819 126.8241405 2.103201928 0.162919 204 60 SH17165 17165 YHR016C_8_138446_136872_INTRON_48_215 intron 34.307246 127.192801 34.307246 93.885555 64.0964005 1.806833641 -0.000003 204 61 SH6572 6572 snR47 5' 34.080533 103.846755 68.963644 1.838620201 -0.210597 204 62 SH15733 15733 YBR230C_2_680008_679507_INTRON_12_108 intron 29.334734 105.376291 29.334734 77.041557 53.1881455 1.725814848 0.088604 204 63 SH11337 11337 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3571 3584 29.189562 76.107527 52.6485445 1.721386369 0.091469 204 64 SH4739 4739 snR4 3' 35.788873 86.07156 60.9302165 1.784832721 0.212595 204 65 SH15625 15625 YBR181C_2_592732_591670_INTRON_7_358 intron 26.286727 107.46598 26.286727 82.179253 54.23299 1.734263549 -0.182742 204 66 SH18515 18515 YMR201C_13_667043_665844_INTRON_28_111 intron 28.522959 115.115054 28.522959 87.592095 58.057527 1.763858533 -0.097754 204 67 SH2351 2351 Phe3 81-91 + 3' flank 81 26.179184 77.897873 52.0385285 1.716325007 -0.137632 204 68 SH15617 15617 YBR181C_2_592732_591670_INTRON_7_358 intron 27.82529 109.559928 27.82529 82.734638 55.279964 1.742567752 -0.082311 204 69 SH5184 5184 snR13 snR13 76 92 40.400858 107.603526 74.002192 1.869244584 -0.142708 204 70 SH54 54 Ala2 5' flank 25.44682 72.457515 48.9521675 1.689771926 -0.122802 204 71 SH13794 13794 MT COB intronic 26.113138 99.311206 26.113138 74.198068 50.155603 1.700319456 -0.095803 204 72 SH18141 18141 YLR406C_12_931752_931062_INTRON_58_406 intron 31.017443 118.141961 31.017443 88.124518 59.5709805 1.775034748 0.005084 204 73 SH10170 10170 RUF6 RUF6 696 708 28.77819 89.056792 58.917491 1.770244244 -0.111485 204 74 SH12022 12022 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6996 7014 31.196917 78.134705 54.665811 1.737715796 0.190463 204 75 SH13242 13242 MT COX1 COX1-ai4 26.860278 95.272927 26.860278 69.412649 48.1364635 1.68247418 0.022499 204 76 SH7819 7819 snoRNA cluster1 intergenic 29.113278 111.967212 29.113278 83.853934 56.483606 1.751922415 -0.010508 204 77 SH19283 19283 YPL143W_16_282121_282969_INTRON_20_544 intron 28.828761 105.242282 28.828761 77.413521 53.121141 1.725267395 0.051 204 78 SH5476 5476 snR32 snR32 41 60 28.468199 75.669346 52.0687725 1.716577339 0.050101 204 79 SH14565 14565 MT 21S rRNA 21S rRNA3 32.636595 124.705183 32.636595 93.068588 62.8525915 1.798323189 -0.024925 204 80 SH7268 7268 snR65 3' 28.046469 80.268536 54.1575025 1.733658628 -0.037096 204 81 SH11500 11500 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4386 4401 37.093728 90.185619 63.6396735 1.803727943 0.14839 204 82 SH17450 17450 YIL148W_9_68708_69528_INTRON_9_442 intron 30.413259 117.322341 30.413259 87.909082 59.1611705 1.772036758 -0.017457 204 83 SH1451 1451 Leu2 tRNA-exon/intron 26 42 28.155294 99.018351 63.5868225 1.803367123 -0.3048 204 84 SH5723 5723 snR34 536-550 + 3' 536 25.798273 82.125299 53.961786 1.732086315 -0.217425 204 85 SH9527 9527 RUF3 RUF3 21 37 34.422174 93.564966 63.99357 1.806136339 0.009802 204 86 SH4156 4156 SRP RNA 671-675 + 3' 671 30.136956 80.755616 55.446286 1.743872461 0.092299 204 87 SH10281 10281 RUF7 RUF7 16 33 35.111884 93.020511 64.0661975 1.806628948 0.038609 204 88 SH7862 7862 snoRNA cluster1 intergenic 28.919248 102.095514 28.919248 74.176266 51.547757 1.712209773 0.099673 204 89 SH16112 16112 YDR064W_4_579453_580447_INTRON_22_560 intron 31.435675 108.107564 31.435675 77.671889 54.553782 1.736824864 0.210776 204 90 SH968 968 Gly1 3' flank 28.787531 73.260023 51.023777 1.707772604 0.103516 204 91 SH8344 8344 snoRNA cluster4 snR53 34.895147 140.094467 34.895147 106.19932 70.5472335 1.848479988 -0.237368 204 92 SH2912 2912 Pro8 tRNA 81 95 32.084583 87.166254 59.6254185 1.77543144 0.067272 204 93 SH6818 6818 snR52 5' - 14 -4 14 29.374367 91.849787 60.612077 1.782559166 -0.131812 204 94 SH13301 13301 MT COX1 COX1-ai5a 26.628827 101.986222 26.628827 76.357395 51.493111 1.711749131 -0.085669 204 95 SH15737 15737 YCR028C-A_3_173432_172942_INTRON_243_325 5' exon 28.323116 107.284321 28.323116 79.961205 54.1421605 1.733535582 -0.014761 204 96 SH16763 16763 YGL087C_7_346902_346404_INTRON_12_96 intron/exon 28.621165 114.116859 28.621165 86.495694 57.5584295 1.760108936 -0.073685 204 97 SH2679 2679 Pro4 tRNA-intron/exon 61 75 96.455994 141.097661 118.7768275 2.074731721 0.199758 204 98 SH20806 20806 YKL180W spliced 30.312883 83.517131 56.915007 1.755226794 0.057403 204 99 SH21122 21122 YNL112W spliced 29.829164 91.207657 60.5184105 1.781887513 -0.100396 204 100 SH3777 3777 Val4 3' flank 29.108469 82.883468 55.9959685 1.748156761 0.000835 204 101 SH19174 19174 YPL079W_16_406631_407534_INTRON_12_432 intron 29.115864 95.93795 29.115864 67.822086 48.468975 1.685463836 0.20003 204 102 SH2224 2224 Phe1 5' flank - tRNA11 11 33.349849 87.28369 60.3167695 1.780438073 0.116956 204 103 SH3003 3003 Ser2 5' flank 30.699755 84.757984 57.7288695 1.761393053 0.051561 204 104 SH21058 21058 YMR194W spliced 30.536683 90.125856 60.3312695 1.780542464 -0.050562 205 2 SH19230 19230 YPL090C_16_378390_377286_INTRON_7_400 intron 30.430665 107.584938 30.430665 78.154273 54.292469 1.734739592 0.143356 205 3 SH1651 1651 Leu5 3' flank 27.947994 81.653623 54.8008085 1.738786966 -0.060852 205 4 SH11145 11145 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2611 2629 189.642712 175.233858 182.438285 2.261115981 0.621127 205 5 SH6751 6751 snR50 5' 30.082655 82.547627 56.315141 1.750625176 0.065261 205 6 SH375 375 Asn1 5' flank 28.530682 82.755131 55.6429065 1.745409807 -0.035389 205 7 SH14956 14956 MT tRNA Met 3' 29.279531 105.098629 29.279531 76.819098 53.0493145 1.724679776 0.08795 205 8 SH2047 2047 Lys4 5' flank 27.31009 67.759155 47.5346225 1.677010049 0.077617 205 9 SH3987 3987 RNase MRP 3' 29.473477 76.524773 52.999125 1.7242687 0.104233 205 10 SH15505 15505 YBR048W_2_332790_333771_INTRON_46_556 intron 28.954036 116.860511 28.954036 88.906475 58.9302555 1.770338324 -0.100719 205 11 SH21232 21232 YOR293W spliced 30.589406 74.953717 52.7715615 1.722399945 0.195024 205 12 SH5368 5368 snR31 5' 30.150668 71.386655 50.7686615 1.705595714 0.216623 205 13 SH9112 9112 snR14 / U4 RNA 3' 32.265344 84.574767 58.4200555 1.766561965 0.121481 205 14 SH2483 2483 Pro1 5' flank 27.877659 84.582436 56.2300475 1.74996845 -0.100883 205 15 SH8606 8606 snR19 / U1 RNA U1 526 543 27.590503 72.133101 49.861802 1.69776797 0.037265 205 16 SH6293 6293 snR42 snR42 246 260 42.409625 114.19586 78.3027425 1.893776973 -0.221724 205 17 SH16313 16313 YDR471W_4_1401759_1402553_INTRON_32_415 5' exon 28.965549 130.211665 28.965549 102.246116 65.6058325 1.816942451 -0.317893 205 18 SH11177 11177 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2771 2786 40.286458 115.738037 78.0122475 1.89216279 -0.292953 205 19 SH19774 19774 Negative Control 29.991632 83.307282 56.649457 1.753195751 0.047035 205 20 SH7082 7082 snR63 5' 28.644399 70.36338 49.5038895 1.694639323 0.133292 205 21 SH13446 13446 MT COX1 intronic 29.130323 116.048164 29.130323 87.917841 58.524082 1.76733461 -0.075296 205 22 SH17416 17416 YIL106W_9_166412_167441_INTRON_21_105 3' exon 29.13492 103.957554 29.13492 75.822634 52.478777 1.719983705 0.091694 205 23 SH10982 10982 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1796 1816 29.058595 74.832631 51.945613 1.715548876 0.09991 205 24 SH4435 4435 telomerase RNA telomerase 1211 1228 31.218002 83.926284 57.572143 1.760212395 0.089222 205 25 SH1795 1795 Leu8 tRNA 1 13 26161.28912 15100.40195 20630.84553 4.314517027 -0.091263 205 26 SH20575 20575 YHR012W spliced 29.341056 80.291143 54.8160995 1.73890813 0.047646 205 27 SH11529 11529 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4531 4549 1952.019394 1652.45941 1802.239402 3.25581248 0.024467 205 28 SH249 249 Arg3 3' flank 28.063815 87.093032 57.5784235 1.76025977 -0.117629 205 29 SH14091 14091 MT COB Cytbi4 26.728314 100.485129 26.728314 74.756815 50.7425645 1.705372412 -0.058159 205 30 SH5340 5340 snR30 snR30 551 567 31.572462 99.080725 65.3265935 1.815090012 -0.180374 205 31 SH2616 2616 Pro3 tRNA-exon/intron 31 45 37.314049 79.923378 58.6187135 1.768036283 0.398759 205 32 SH13997 13997 MT COB intronic 26.874163 94.718762 26.874163 68.844599 47.859381 1.679967077 0.031379 205 33 SH18073 18073 YLR344W_12_819312_820142_INTRON_20_466 intron 57.2694 160.945427 57.2694 104.676027 80.9727135 1.908338693 0.21909 205 34 SH16738 16738 YGL076C_7_365994_364333_INTRON_565_1032 intron 27.824484 104.494961 27.824484 77.670477 52.7474805 1.72220172 -0.019126 205 35 SH7211 7211 snR64 3' 28.081733 68.648233 48.364983 1.684531039 0.118767 205 36 SH11416 11416 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3966 3983 62.639471 109.089546 85.8645085 1.933813688 0.224162 205 37 SH20552 20552 YGR225W spliced 27.136977 84.31001 55.7234935 1.746038336 -0.148391 205 38 SH20826 20826 YKR094C spliced 32.848 90.481837 61.6649185 1.790038162 0.037833 205 39 SH15390 15390 YBL040C_2_142830_142074_INTRON_23_119 intron 38.498454 131.578035 38.498454 94.079581 66.2890175 1.821441582 0.093427 205 40 SH6228 6228 snR42 5' 27.355526 77.383161 52.3693435 1.71907713 -0.047442 205 41 SH21510 21510 copy of SH2855 34.539752 85.352078 59.945915 1.777759594 0.198497 205 42 SH8727 8727 LSR1 / U2 RNA U2 276 293 28.661237 71.955193 50.308215 1.701638908 0.112958 205 43 SH447 447 Asp1 tRNA 56 68 31.632435 84.119962 57.8761985 1.762499997 0.103307 205 44 SH6342 6342 snR43 5' 27.044014 83.116823 55.0804185 1.740997231 -0.140586 205 45 SH10545 10545 RUF8 RUF8 651 673 26.448945 70.23075 48.3398475 1.684305276 -0.018464 205 46 SH12409 12409 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.970524 115.527542 29.970524 86.557018 58.263771 1.76539859 -0.013106 205 47 SH3477 3477 Tyr1 5' flank 31.470154 88.692943 60.0815485 1.778741117 0.014532 205 48 SH15343 15343 YBL018C_2_186436_185960_INTRON_48_122 5' exon 103.265787 251.47745 103.265787 149.211663 126.238725 2.1011926 0.177753 205 49 SH11692 11692 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5346 5363 165.233055 200.013853 182.623454 2.261556552 0.232861 205 50 SH18556 18556 YMR292W_13_854795_855293_INTRON_23_104 5' exon 30.509246 113.933235 30.509246 84.423989 57.4666175 1.759415635 0.049338 205 51 SH16626 16626 YFL039C_6_54695_53260_INTRON_11_318 intron 27.578409 101.615424 27.578409 75.037015 51.307712 1.710182648 -0.001453 205 52 SH12001 12001 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6891 6908 35.402949 95.186692 65.2948205 1.814878732 -0.001081 205 53 SH12493 12493 MT_tRNA Pro 5' 28.063506 97.927212 28.063506 70.863706 49.463606 1.694285774 0.087037 205 54 SH3226 3226 Thr1 5' flank - tRNA2 2 34.067664 91.30693 62.687297 1.797179544 0.050561 205 55 SH12221 12221 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.381446 112.56295 28.381446 85.181504 56.781475 1.75420667 -0.074204 205 56 SH20761 20761 YJR145C spliced 218.750734 299.67047 259.210602 2.413652761 -0.09344 205 57 SH11478 11478 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4276 4291 164.323315 165.137623 164.730469 2.216773935 0.549502 205 58 SH16013 16013 YDL137W_4_216158_217074_INTRON_1_332 intron 27.516582 95.563257 27.516582 69.046675 48.2816285 1.68378191 0.074061 205 59 SH20194 20194 YDR005C spliced 30.133199 91.53523 60.8342145 1.784147905 -0.092369 205 60 SH14577 14577 MT 21S rRNA intronic 27.540602 107.323718 27.540602 80.783116 54.161859 1.733693562 -0.077789 205 61 SH12817 12817 MT COX1 COX1ai1 29.589762 114.173587 29.589762 85.583825 57.5867935 1.760322897 -0.012728 205 62 SH11310 11310 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2/25S 3436 3454 29.487704 86.919376 58.20354 1.7649494 -0.041306 205 63 SH3730 3730 Val3 3' flank 27.028885 85.172255 56.10057 1.748967274 -0.166099 205 64 SH4015 4015 SRP RNA 5' 26.439607 69.557701 47.998654 1.681229059 -0.009904 205 65 SH2023 2023 Lys3 tRNA 61 75 50.46198 103.257666 76.859823 1.88569938 0.132964 205 66 SH8658 8658 LSR1 / U2 RNA 5' 25.846122 74.169592 50.007857 1.699038244 -0.115228 205 67 SH3411 3411 Thr4 3' flank 30.317621 75.257765 52.787693 1.722532682 0.174155 205 68 SH6553 6553 snR46 3' 27.423285 77.184994 52.3041395 1.718536062 -0.040214 205 69 SH20530 20530 YGR148C spliced 28.915589 82.916834 55.9162115 1.747537739 -0.012094 205 70 SH18971 18971 YOR096W_15_505793_506766_INTRON_145_545 intron 45.494358 144.776251 45.494358 100.281893 72.8881255 1.862656781 0.101991 205 71 SH17563 17563 YJL189W_10_75932_76473_INTRON_7_392 intron 30.068781 121.552238 30.068781 92.483457 61.276119 1.787291251 -0.111176 205 72 SH6840 6840 snR52 3' 26.310059 76.694874 51.5024665 1.711828028 -0.113093 205 73 SH16526 16526 YER131W_5_423587_424307_INTRON_1_361 intron 28.929954 113.370335 28.929954 85.440381 57.1851675 1.757283398 -0.041175 205 74 SH8744 8744 LSR1 / U2 RNA U2 361 378 29.22685 80.232611 54.7297305 1.73822331 0.041028 205 75 SH14021 14021 MT COB Exon4 27.006933 98.795017 27.006933 72.788084 49.8975085 1.698078861 -0.012579 205 76 SH14574 14574 MT 21S rRNA intronic 31.361478 113.266542 31.361478 82.905064 57.133271 1.756889089 0.114298 205 77 SH3597 3597 Val1 5' flank - tRNA1 1 28.673271 80.959504 54.8163875 1.738910411 -0.004032 205 78 SH15679 15679 YBR191W_2_606228_607098_INTRON_12_399 intron 30.540376 121.035691 30.540376 91.495315 61.0178455 1.785456869 -0.07373 205 79 SH15022 15022 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.113367 107.149551 28.113367 80.036184 54.0747755 1.732994725 -0.029705 205 80 SH2915 2915 Pro8 96-105 + 3' flank 96 32.59628 88.490596 60.543438 1.782067079 0.065122 205 81 SH7758 7758 snoRNA cluster1 snR76 28.186165 107.48989 28.186165 80.303725 54.244945 1.734359273 -0.028173 205 82 SH13318 13318 MT COX1 COX1-ai5a 28.01626 93.855237 28.01626 66.838977 47.4276185 1.676031318 0.139901 205 83 SH11437 11437 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4071 4084 45.794549 103.722538 74.7585435 1.873660832 0.039205 205 84 SH18605 18605 YNL069C_14_494998_493953_INTRON_29_477 intron 25.861463 96.01279 25.861463 71.151327 48.506395 1.685798999 -0.074219 205 85 SH2189 2189 Met2 3' flank 28.291939 72.282199 50.287069 1.701456323 0.083631 205 86 SH15651 15651 YBR189W_2_604466_605466_INTRON_8_420 intron 26.139931 105.096206 26.139931 79.956275 53.048103 1.724669858 -0.165837 205 87 SH7463 7463 snR71 5' 35.235005 94.315589 64.775297 1.811409413 0.013524 205 88 SH10627 10627 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 21 39 31.149561 82.572335 56.860948 1.754814096 0.111444 205 89 SH18452 18452 YMR143W_13_551927_552902_INTRON_25_568 exon/intron 26.940985 106.128969 26.940985 80.187984 53.5644845 1.72887693 -0.111861 205 90 SH3309 3309 Thr2 3' flank 29.014405 67.075277 48.044841 1.68164676 0.203932 205 91 SH1347 1347 Ile3 tRNA 116 128 35.30986 92.910539 64.1101995 1.806927128 0.045817 205 92 SH15461 15461 YBL087C_2_60732_59815_INTRON_43_546 intron 76.781126 199.804995 76.781126 124.023869 100.4024975 2.001744516 0.187288 205 93 SH18420 18420 YMR133W_13_536206_537608_INTRON_1243_1358 intron 28.995462 108.608955 28.995462 80.613493 54.8044775 1.738816042 0.02131 205 94 SH6953 6953 snR58 3' 27.591157 75.811795 51.701476 1.713502942 -0.010742 205 95 SH4786 4786 snR5 snR5 101 118 27.29779 74.25809 50.77794 1.705675078 -0.011136 205 96 SH21331 21331 YPR043W spliced 38.288463 94.493371 66.390917 1.822108667 0.079875 205 97 SH14552 14552 MT 21S rRNA 21S rRNA3 27.91744 98.998502 27.91744 72.081062 49.999251 1.698963499 0.060643 205 98 SH2630 2630 Pro3 101-103 + 3' flank 101 28.572905 85.707159 57.140032 1.756940479 -0.067696 205 99 SH21544 21544 copy of SH4253 29.018412 72.592525 50.8054685 1.705910461 0.127732 205 100 SH20130 20130 YDL082W spliced 26.920972 83.978026 55.449499 1.743897627 -0.159499 205 101 SH14852 14852 MT tRNA Ser2; tRNA Arg2 5' 29.008579 96.681823 29.008579 68.673244 48.8409115 1.68878376 0.180953 205 102 SH20809 20809 YKL186C spliced 28.543406 83.779613 56.1615095 1.749438772 -0.046868 205 103 SH2730 2730 Pro5 tRNA-exon/intron 31 45 34.956321 79.831201 57.393761 1.758864685 0.317989 205 104 SH17781 17781 YKL180W_11_109271_110131_INTRON_310_615 intron 30.326956 103.486045 30.326956 74.159089 52.2430225 1.718028295 0.189459 206 2 SH12958 12958 MT COX1 COX1ai2 32.036095 129.568465 32.036095 98.53237 65.2842325 1.814808303 -0.156644 206 3 SH6064 6064 snR37 snR37 236 252 27.451435 78.883179 53.167307 1.725644663 -0.06007 206 4 SH16296 16296 YDR450W_4_1359912_1360787_INTRON_48_482 intron 29.513804 115.242449 29.513804 86.728645 58.1212245 1.764334755 -0.036724 206 5 SH12971 12971 MT COX1 COX1ai2 27.498083 97.869217 27.498083 71.371134 49.4346085 1.694031099 0.040993 206 6 SH9973 9973 RUF5-1 RUF5-1 671 692 28.269031 85.680937 56.974984 1.755684212 -0.087535 206 7 SH16899 16899 YGL226C-A_7_73156_72747_INTRON_22_170 intron 29.323212 105.991908 29.323212 77.668696 53.495954 1.728320937 0.079747 206 8 SH15499 15499 YBL092W_2_45639_46364_INTRON_1_333 intron 27.641761 89.0888 27.641761 62.447039 45.0444 1.653640806 0.179665 206 9 SH12737 12737 MT COX1 exon1 / coxai1 27.609274 116.357417 27.609274 89.748143 58.6787085 1.768480547 -0.178947 206 10 SH11707 11707 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5421 5434 239.637101 136.926769 188.281935 2.274808653 1.317637 206 11 SH7910 7910 snoRNA cluster1 intergenic 25.877094 109.093318 25.877094 84.216224 55.046659 1.740730965 -0.236849 206 12 SH18394 18394 YMR125W_13_517538_520445_INTRON_26_347 5' exon 27.153064 96.977422 27.153064 70.824358 48.988711 1.690096012 0.024057 206 13 SH6725 6725 snR49 151-165 + 3' 151 28.912432 70.65052 49.781476 1.697067769 0.147321 206 14 SH6556 6556 snR46 3' 31.064602 93.248199 62.1564005 1.793485856 -0.080308 206 15 SH20704 20704 YJL001W spliced 28.758305 75.378232 52.0682685 1.716573136 0.073064 206 16 SH4619 4619 snR3 snR3 11 28 68.153414 133.057105 100.6052595 2.002620686 -0.066375 206 17 SH4679 4679 snR4 5' 27.81978 128.803275 78.3115275 1.893825695 -0.821829 206 18 SH14500 14500 MT 21S rRNA 21S rRNA3 1209.063463 2279.659306 1209.063463 1071.595843 1140.329653 3.057030418 0.072228 206 19 SH995 995 Gly2 5' flank 28.490234 82.199317 55.3447755 1.74307663 -0.031315 206 20 SH1594 1594 Leu4 3' flank 84.402962 114.262306 99.332634 1.997091952 0.436986 206 21 SH21805 21805 copy of SH15280 27.807723 75.595929 51.701826 1.713505882 0.006844 206 22 SH7870 7870 snoRNA cluster1 snR73 70.503776 202.830393 70.503776 133.326617 101.9151965 2.008238946 -0.034878 206 23 SH18456 18456 YMR143W_13_551927_552902_INTRON_25_568 intron 37.155867 129.28455 37.155867 93.128683 65.142275 1.813862922 0.084611 206 24 SH544 544 Cys1 tRNA 21 33 94.825471 184.3981 139.6117855 2.144922081 -0.288674 206 25 SH15943 15943 YDL125C_4_239605_239018_INTRON_98_208 exon/intron 27.475996 113.288395 27.475996 86.812399 57.1441975 1.756972138 -0.154283 206 26 SH20381 20381 YFL034C-A spliced 40.894088 96.811859 68.8529735 1.837922701 0.084045 206 27 SH10676 10676 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 266 283 46.731741 109.332095 78.031918 1.892272282 -0.049508 206 28 SH3439 3439 Trp1 tRNA 26 43 28.173862 81.151896 54.662879 1.737692502 -0.039515 206 29 SH16369 16369 YER003C_5_159117_157735_INTRON_32_124 5' exon 29.295616 116.757988 29.295616 88.462372 58.878994 1.769960381 -0.077274 206 30 SH12756 12756 MT COX1 COX1ai1 27.200184 100.615835 27.200184 74.415651 50.8079175 1.705931395 -0.020068 206 31 SH20209 20209 YDR059C spliced 29.090822 88.164207 58.6275145 1.768101483 -0.081441 206 32 SH6762 6762 snR50 5' - 3 -14 3 28.753597 86.905522 57.8295595 1.762149884 -0.074802 206 33 SH6644 6644 snR48 snR48 46 63 26.664219 77.224151 51.944185 1.715536937 -0.093942 206 34 SH20698 20698 YJL001W spliced 29.540327 84.125735 56.833031 1.754600818 0.011617 206 35 SH15375 15375 YBL027W_2_168385_169338_INTRON_3_386 intron 30.003736 119.404766 30.003736 90.40103 60.202383 1.779613682 -0.078844 206 36 SH18081 18081 YLR344W_12_819312_820142_INTRON_20_466 intron 30.098999 116.496173 30.098999 87.397174 58.7480865 1.768993726 -0.022324 206 37 SH15961 15961 YDL130W_4_229906_230527_INTRON_115_415 intron 29.771528 115.259619 29.771528 86.488091 58.1298095 1.7643989 -0.02079 206 38 SH9920 9920 RUF5-1 RUF5-1 406 425 26.779797 82.438403 54.6091 1.737265019 -0.150879 206 39 SH20557 20557 YHL001W spliced 35.274873 84.251092 59.7629825 1.776432263 0.243641 206 40 SH13626 13626 MT ATP6 ATP6 26.231384 102.165125 26.231384 76.933741 51.5825625 1.712502913 -0.121845 206 41 SH3800 3800 RNaseP 5' flank 274.240391 324.5972 299.4187955 2.476279059 0.060318 206 42 SH9444 9444 RUF2 RUF2 61 73 54.031934 113.398364 83.715149 1.922804055 0.008881 206 43 SH13862 13862 MT COB Cytbi2 27.562864 97.277489 27.562864 70.714625 49.1387445 1.691424056 0.054393 206 44 SH14819 14819 "MT tRNAs (Lys, Arg1, Gly)" intergenic 27.225184 102.393877 27.225184 76.168693 51.6969385 1.713464825 -0.040642 206 45 SH9895 9895 RUF5-1 RUF5-1 281 297 30.74348 82.95055 56.847015 1.754707665 0.086812 206 46 SH18023 18023 YLR306W_12_744151_744851_INTRON_4_137 intron 49.483369 140.045694 49.483369 91.562325 70.522847 1.848329836 0.358533 206 47 SH7585 7585 snR189 5' - 19 -4 19 26.630857 77.105398 51.8681275 1.71490057 -0.094877 206 48 SH8789 8789 LSR1 / U2 RNA U2 586 602 43.588449 100.583904 72.0861765 1.857851991 0.059212 206 49 SH2685 2685 Pro4 91-102 + 3' flank 91 40.878012 94.996249 67.9371305 1.832107199 0.122772 206 50 SH9966 9966 RUF5-1 RUF5-1 636 653 27.593405 96.460843 62.027124 1.792581645 -0.291299 206 51 SH21124 21124 YNL112W spliced 28.187029 83.270613 55.728821 1.746079855 -0.064439 206 52 SH17431 17431 YIL133C_9_99416_98527_INTRON_32_321 intron 28.225624 108.713203 28.225624 81.487579 54.8566015 1.739228899 -0.04019 206 53 SH13282 13282 MT COX1 Exon 5a 25.656704 98.580182 25.656704 73.923478 49.790091 1.69714292 -0.126204 206 54 SH285 285 Arg4 21-33 21 33 38.237431 92.841456 65.5394435 1.816502749 0.115155 206 55 SH9617 9617 RUF3 3' 26.892895 76.660675 51.776785 1.71413508 -0.07047 206 56 SH11115 11115 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2461 2478 534.118139 493.040096 513.5791175 2.710607357 0.235884 206 57 SH3907 3907 RNase MRP 5' 30.499585 92.308652 61.4041185 1.788197501 -0.08921 206 58 SH7086 7086 snR63 5' 29.527879 78.112129 53.820004 1.730943726 0.087152 206 59 SH5603 5603 snR34 5' 30.121478 90.910946 60.516212 1.781871736 -0.082303 206 60 SH20250 20250 YDR381C-A spliced 27.647035 78.354401 53.000718 1.724281753 -0.039958 206 61 SH7810 7810 snoRNA cluster1 intergenic 29.639434 112.873247 29.639434 84.233813 56.9366235 1.755391709 0.014114 206 62 SH21785 21785 copy of SH14440 36.425415 84.002056 60.2137355 1.779695571 0.277085 206 63 SH10408 10408 RUF8 5' 26.880887 81.063304 53.9720955 1.73216928 -0.126939 206 64 SH5063 5063 snR11 5' 28.20544 77.836583 53.0210115 1.724448009 0.004357 206 65 SH20132 20132 YDL083C spliced 47.184553 90.876401 69.030477 1.839040874 0.333013 206 66 SH7420 7420 snR69 snR69 1 17 50.713194 110.043432 80.378313 1.905138887 0.010596 206 67 SH6848 6848 snR52 3' 25.159233 74.693348 49.9262905 1.698329299 -0.173853 206 68 SH11402 11402 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3896 3911 33.508742 80.091033 56.7998875 1.754347476 0.256356 206 69 SH10571 10571 RUF8 RUF8 781 795 33.112371 74.006442 53.5594065 1.728835756 0.357085 206 70 SH2617 2617 Pro3 tRNA-exon/intron 36 52 29.308801 84.291606 56.8002035 1.754349892 -0.003109 206 71 SH1073 1073 Gly3 3' flank 26.799076 90.5806 58.689838 1.768562911 -0.243826 206 72 SH2494 2494 Pro1 5' flank 39.591669 92.732186 66.1619275 1.820608149 0.146219 206 73 SH15117 15117 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 3' 26.335604 103.209313 26.335604 77.873709 52.1046565 1.716876537 -0.125862 206 74 SH16341 16341 YDR500C_4_1450856_1450201_INTRON_8_396 intron 72.523205 196.316011 72.523205 124.792806 98.6580055 1.994132331 0.116591 206 75 SH3703 3703 Val3 5' flank - tRNA15 15 30.023457 84.023656 57.0235565 1.7560543 0.035208 206 76 SH4163 4163 SRP RNA 3' 30.683222 84.490291 57.5867565 1.760322618 0.055734 206 77 SH3365 3365 Thr4 5' flank 30.152449 73.124009 51.638229 1.712971339 0.192659 206 78 SH13971 13971 MT COB Cytbi3 27.713122 106.445651 27.713122 79.732529 53.7228255 1.730158846 -0.052916 206 79 SH1106 1106 Gly4 tRNA 6 23 34.476023 84.23843 59.3572265 1.7734736 0.216342 206 80 SH7974 7974 snoRNA cluster 2 snR57 28.258252 101.947379 28.258252 74.689127 51.4736895 1.711585298 0.049209 206 81 SH7651 7651 snoRNA cluster1 5' 26.228482 104.849204 26.228482 79.620722 52.924602 1.723657601 -0.155254 206 82 SH8433 8433 snoRNA cluster 5 intergenic 30.387698 115.414869 30.387698 86.027171 58.2074345 1.764978458 0.014894 206 83 SH14609 14609 MT 21S rRNA Sce1 endonuc 30.159965 114.666241 30.159965 85.506276 57.8331205 1.762176626 0.014221 206 84 SH4382 4382 telomerase RNA telomerase 946 963 32.806656 93.882187 63.3444215 1.801708374 -0.038158 206 85 SH10716 10716 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 466 481 74.507244 150.211136 112.35919 2.0506086 -0.194308 206 86 SH15647 15647 YBR189W_2_604466_605466_INTRON_8_420 intron 28.914413 109.970189 28.914413 82.055776 55.4850945 1.74417633 -0.001719 206 87 SH3348 3348 Thr3 3' flank 29.855141 74.639602 52.2473715 1.718064447 0.153449 206 88 SH4501 4501 U3b (snR17b) U3b 61 78 28.908885 102.654367 65.781626 1.818104604 -0.327659 206 89 SH12588 12588 MT_15S MT_15S 27.030432 95.645239 27.030432 69.614807 48.3226195 1.684150469 0.031869 206 90 SH6447 6447 snR45 snR45 81 98 269.516954 390.659109 330.0880315 2.518629778 -0.261744 206 91 SH4646 4646 snR3 snR3 146 165 29.041962 72.739844 50.890903 1.706640157 0.12723 206 92 SH16814 16814 YGL178W_7_167356_170575_INTRON_4_643 intron 26.278946 90.922453 26.278946 65.643507 45.9612265 1.66239161 0.034431 206 93 SH17573 17573 YJL189W_10_75932_76473_INTRON_7_392 3' exon 28.111011 102.418217 28.111011 75.307206 51.7091085 1.71356705 0.031114 206 94 SH20923 20923 YLR367W spliced 32.232544 104.298659 68.2656015 1.834201921 -0.26691 206 95 SH4807 4807 snR5 3' 27.71526 69.782197 48.7487285 1.687963293 0.077748 206 96 SH5599 5599 snR34 5' 32.250386 94.707909 63.4791475 1.802631086 -0.070557 206 97 SH14116 14116 MT COB intronic 28.324153 106.78467 28.324153 79.460517 53.892335 1.731527001 -0.008403 206 98 SH9989 9989 RUF5-1 RUF5-1 751 768 31.082444 92.383779 61.7331115 1.790518167 -0.065132 206 99 SH348 348 Arg5 3' flank 31.328272 89.838537 60.5834045 1.782353675 -0.01137 206 100 SH11767 11767 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5721 5738 31.32281 87.779835 59.5513225 1.774891411 0.024259 206 101 SH12631 12631 MT_15S MT_15S 31.054301 114.854989 31.054301 84.800688 57.9274945 1.762884745 0.066151 206 102 SH12980 12980 MT COX1 COX1ai2 30.575958 112.202039 30.575958 82.626081 56.6010195 1.752824254 0.085562 206 103 SH21169 21169 YNL312W spliced 30.224644 96.154711 63.1896775 1.800646139 -0.164478 206 104 SH2258 2258 Phe1 3' flank 27.888175 90.876966 59.3825705 1.773658993 -0.184831 207 2 SH9786 9786 RUF4 RUF4 706 727 26.528401 78.733944 52.6311725 1.721243045 -0.122618 207 3 SH570 570 Cys1 3' flank 33.362184 83.706787 58.5344855 1.767411805 0.182181 207 4 SH15911 15911 YDL083C_4_307788_306925_INTRON_25_456 intron 26.82466 95.608087 26.82466 69.783427 48.3040435 1.683983487 0.014831 207 5 SH7714 7714 snoRNA cluster1 snR77 46.952388 151.240607 46.952388 105.288219 76.1203035 1.881500511 0.030218 207 6 SH10084 10084 RUF6 RUF6 266 285 31.158129 97.305727 64.231928 1.807750958 -0.154957 207 7 SH7433 7433 snR69 snR69 66 83 64.37364 103.958661 84.1661505 1.925137464 0.343367 207 8 SH15425 15425 YBL072C_2_89435_88518_INTRON_1_308 intron 29.746629 105.170032 29.746629 76.423403 53.085016 1.724971953 0.122942 207 9 SH5396 5396 snR31 snR31 46 62 32.142588 86.0067 59.074644 1.771401113 0.090406 207 10 SH4840 4840 snR8 5' 26.760488 77.806894 52.283691 1.718366239 -0.094347 207 11 SH4514 4514 U3b (snR17b) U3b 126 143 34.303461 91.856628 63.0800445 1.799891991 0.044268 207 12 SH10382 10382 RUF7 3' 46.726291 133.754052 90.2401715 1.955399912 -0.448671 207 13 SH1198 1198 Ile1 5' flank 31.806903 111.630153 71.718528 1.855631367 -0.416479 207 14 SH10160 10160 RUF6 RUF6 646 663 27.726491 96.256831 61.991661 1.792333273 -0.281584 207 15 SH4433 4433 telomerase RNA telomerase 1201 1215 27.921528 89.819769 58.8706485 1.76989882 -0.165129 207 16 SH8669 8669 LSR1 / U2 RNA 5' - 3 -14 3 29.755489 124.602762 77.1791255 1.887499853 -0.698097 207 17 SH6843 6843 snR52 3' 39.725577 139.075833 89.400705 1.951340944 -0.673974 207 18 SH20905 20905 YLR316C spliced 25.095642 79.727272 52.411457 1.719426233 -0.241311 207 19 SH10642 10642 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 96 117 31.353693 92.603972 61.9788325 1.792243391 -0.057185 207 20 SH21934 21934 copy of SH19617 32.176105 78.11661 55.1463575 1.741516832 0.240655 207 21 SH6414 6414 snR45 5' 31.020551 89.861327 60.440939 1.781331203 -0.024973 207 22 SH15781 15781 YDL012C_4_431513_431104_INTRON_46_131 3' exon 31.598729 117.549616 31.598729 86.950887 59.274808 1.772870156 0.050676 207 23 SH5292 5292 snR30 snR30 311 327 29.719612 75.74003 52.729821 1.722056297 0.130223 207 24 SH154 154 Arg1 3' flank 27.632633 78.408581 53.020607 1.724444695 -0.041632 207 25 SH15354 15354 YBL026W_2_170585_171000_INTRON_55_182 intron 27.328977 105.451923 27.328977 79.122946 53.2259615 1.726123515 -0.071532 207 26 SH17627 17627 YJR094W-A_10_608000_608553_INTRON_3_277 intron 26.963134 99.519202 26.963134 73.556068 50.259601 1.701219037 -0.025776 207 27 SH8894 8894 LSR1 / U2 RNA U2 1111 1127 27.361445 72.678704 50.0200745 1.699144334 0.013979 207 28 SH16514 16514 YER117W_5_396765_397649_INTRON_43_513 intron 28.584142 103.386681 28.584142 75.802539 52.1933405 1.717615094 0.055999 207 29 SH19615 19615 RNA14 1.1 29.591312 75.57232 52.581816 1.720835581 0.124291 207 30 SH14532 14532 MT 21S rRNA 21S rRNA3 27.339616 96.84465 27.339616 70.505034 48.922325 1.689507088 0.041579 207 31 SH967 967 Gly1 3' flank 28.977631 75.874209 52.42592 1.71954606 0.080813 207 32 SH20765 20765 YJR145C spliced 35.019767 97.809392 66.4145795 1.822263427 -0.065577 207 33 SH5273 5273 snR30 snR30 216 230 44.075143 89.341978 66.7085605 1.824181569 0.311304 207 34 SH1792 1792 Leu8 5' flank - tRNA3 3 28.657123 82.424093 55.540608 1.74461063 -0.023044 207 35 SH877 877 Glu2 3' flank 29.245147 71.304364 50.2747555 1.701349967 0.160323 207 36 SH5872 5872 snR35 3' 34.429408 88.958586 61.693997 1.790242908 0.112499 207 37 SH16011 16011 YDL137W_4_216158_217074_INTRON_1_332 intron 27.45615 96.490297 27.45615 70.034147 48.7451485 1.687931398 0.056201 207 38 SH20628 20628 YHR123W spliced 27.178848 83.616886 55.397867 1.743493043 -0.137221 207 39 SH4298 4298 telomerase RNA telomerase 526 545 29.158935 74.129847 51.644391 1.713023161 0.115852 207 40 SH18961 18961 YOL127W_15_80347_81189_INTRON_14_427 intron 28.106381 116.23137 28.106381 89.124989 58.615685 1.768013845 -0.144284 207 41 SH15289 15289 MT 9S rRNA 9S 27.410407 107.038958 27.410407 80.628551 54.019479 1.732550391 -0.084799 207 42 SH1042 1042 Gly3 5' flank 30.258292 93.677522 61.967907 1.792166828 -0.122612 207 43 SH12973 12973 MT COX1 COX1ai2 27.921763 98.388944 27.921763 71.467181 49.694472 1.696308081 0.069149 207 44 SH2069 2069 Lys4 tRNA 11 25 34.47205 90.301679 62.3868645 1.795093159 0.083128 207 45 SH2201 2201 Met2 3' flank 26.42407 78.719764 52.571917 1.720753814 -0.129862 207 46 SH7121 7121 snR63 snR63 111 130 27.704661 76.910713 52.307687 1.718565516 -0.017415 207 47 SH19520 19520 ACT1 30.440992 88.921069 59.6810305 1.775836313 -0.033944 207 48 SH14226 14226 MT ATP9 ATP9 26.985283 99.305998 26.985283 73.320715 50.152999 1.700296908 -0.02112 207 49 SH9604 9604 RUF3 RUF3 406 422 26.8829 65.194792 46.038846 1.663124429 0.084276 207 50 SH20481 20481 YGL226C-A spliced 27.039985 85.190044 56.1150145 1.749079079 -0.165534 207 51 SH17849 17849 YKR094C_11_618384_617630_INTRON_9_376 3' exon 25.194355 93.94972 25.194355 69.755365 47.47486 1.676463693 -0.105534 207 52 SH20570 20570 YHR010W spliced 31.79172 83.532701 57.6622105 1.760891287 0.120867 207 53 SH5963 5963 snR36 snR36 271 287 29.414349 75.599824 52.5070865 1.720217921 0.112625 207 54 SH5413 5413 snR31 snR31 131 147 26.774458 73.181049 49.9777535 1.698776731 -0.034395 207 55 SH14910 14910 MT tRNA Tyr 5' 26.141778 96.739391 26.141778 71.597613 48.8696955 1.689039633 -0.059457 207 56 SH12018 12018 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6976 6996 37.660351 88.298835 62.979593 1.79919985 0.204282 207 57 SH21488 21488 copy of SH1854 802.267218 1384.945917 1093.606568 3.03886111 -0.870197 207 58 SH8008 8008 snoRNA cluster 2 intergenic 28.772487 106.304369 28.772487 78.531882 53.6521845 1.729587409 0.032957 207 59 SH11759 11759 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5681 5694 21526.48701 14954.49359 18240.4903 4.261036508 -0.33055 207 60 SH1715 1715 Leu6 3' flank 29.864547 79.026607 54.445577 1.735962605 0.09686 207 61 SH12037 12037 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7071 7093 31.857019 75.571994 53.7145065 1.73009159 0.263304 207 62 SH16298 16298 YDR450W_4_1359912_1360787_INTRON_48_482 intron 29.323189 120.298063 29.323189 91.974874 60.6490315 1.78282387 -0.136252 207 63 SH16656 16656 YFR032C-A_6_223758_223245_INTRON_1_331 5' exon 29.058848 105.572186 29.058848 77.513338 53.286093 1.726613878 0.064688 207 64 SH6394 6394 snR43 3' 25.881234 68.949326 47.41528 1.67591832 -0.042581 207 65 SH386 386 Asn1 11-26 11 26 44.421198 108.563015 76.4921065 1.883616621 -0.079405 207 66 SH5869 5869 snR35 531-540 + 3' 531 33.03033 95.998521 64.5144255 1.809656834 -0.077618 207 67 SH5501 5501 snR32 snR32 166 181 376.431938 636.379425 506.4056815 2.70449857 -0.621653 207 68 SH1346 1346 Ile3 tRNA 111 123 29.429796 84.197799 56.8137975 1.754453819 0.005275 207 69 SH18747 18747 YNL162W_14_331319_332151_INTRON_5_516 intron 42.877039 143.50867 42.877039 101.631631 72.254335 1.858863908 0.02409 207 70 SH9532 9532 RUF3 RUF3 46 64 28.027023 81.915996 54.9715095 1.740137663 -0.058744 207 71 SH10250 10250 RUF6 3' 26.121759 74.887408 50.5045835 1.703330794 -0.104041 207 72 SH17158 17158 YHR016C_8_138446_136872_INTRON_48_215 5' exon 30.184661 120.475104 30.184661 91.290443 60.737552 1.783457284 -0.085943 207 73 SH9819 9819 RUF5-1 5' 27.646842 78.46272 53.054781 1.724724526 -0.041354 207 74 SH6732 6732 snR49 3' 25.609185 73.25604 49.4326125 1.694013563 -0.121071 207 75 SH11033 11033 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2051 2064 274.438493 240.676551 257.557522 2.410874238 0.548539 207 76 SH20377 20377 YER179W spliced 31.911973 82.046115 56.979044 1.755715158 0.153699 207 77 SH20293 20293 YDR500C spliced 70.086475 115.75655 92.9215125 1.96811627 0.221754 207 78 SH21689 21689 copy of SH10449 29.101332 81.739218 55.420275 1.743668676 0.014292 207 79 SH2071 2071 Lys4 tRNA 21 33 34.102116 81.654613 57.8783645 1.762516251 0.24994 207 80 SH19368 19368 YPR028W_16_623522_624197_INTRON_52_184 intron 28.243957 103.506206 28.243957 76.262249 52.253103 1.718112086 0.027387 207 81 SH18062 18062 YLR344W_12_819312_820142_INTRON_20_466 5' exon 30.647727 115.458801 30.647727 85.811074 58.2294005 1.765142319 0.030189 207 82 SH532 532 Cys1 5' flank 26.911603 75.848675 51.380139 1.710795275 -0.058912 207 83 SH576 576 Gln1 5' flank 27.766174 78.305935 53.0360545 1.724571208 -0.031237 207 84 SH12412 12412 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.315494 102.414828 28.315494 75.099334 51.707414 1.713552818 0.047538 207 85 SH18988 18988 YOR096W_15_505793_506766_INTRON_145_545 intron/exon 26.824476 102.681411 26.824476 76.856935 51.8407055 1.714670903 -0.077829 207 86 SH67 67 Ala2 5' flank 29.201163 80.381157 54.79116 1.738710495 0.037519 207 87 SH13183 13183 MT COX1 Exon4 33.362893 115.495037 33.362893 83.132144 58.2475185 1.765277428 0.192866 207 88 SH18299 18299 YML073C_13_124172_123227_INTRON_16_430 intron 33.24519 127.712757 33.24519 95.467567 64.3563785 1.808591597 -0.060813 207 89 SH16493 16493 YER117W_5_396765_397649_INTRON_43_513 exon/intron 26.761794 103.189779 26.761794 77.427985 52.0948895 1.716795121 -0.089438 207 90 SH18919 18919 YOL121C_15_92849_92025_INTRON_21_410 exon/intron 29.403933 118.334558 29.403933 89.930625 59.667279 1.775736233 -0.0978 207 91 SH1037 1037 Gly3 5' flank 29.292998 76.295069 52.7940335 1.722584844 0.09567 207 92 SH3011 3011 Ser2 tRNA 16 32 59.604171 106.063993 82.834082 1.918209064 0.231498 207 93 SH4932 4932 snR9 snR9 66 78 36.791184 80.16384 58.477512 1.766988887 0.380028 207 94 SH12753 12753 MT COX1 COX1ai1 27.48804 97.879919 27.48804 71.391879 49.4399595 1.694078106 0.040011 207 95 SH12305 12305 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.7691 109.10385 29.7691 80.33475 55.051925 1.74077251 0.074391 207 96 SH20113 20113 YDL075W spliced 30.195913 88.842709 59.519311 1.774657895 -0.043399 207 97 SH7801 7801 snoRNA cluster1 snR75 30.725724 103.725959 30.725724 74.000235 52.3629795 1.71902435 0.21622 207 98 SH658 658 Gln2 3' flank 26.574981 72.198238 49.3866095 1.693609212 -0.035822 207 99 SH3455 3455 Trp1 106 + 3' flank 106 28.847675 71.075041 49.961358 1.698634234 0.137254 207 100 SH14635 14635 MT 21S rRNA Sce1 endonuc 28.688524 105.934005 28.688524 78.245481 53.4670025 1.728085837 0.031109 207 101 SH8287 8287 snoRNA cluster4 intergenic 28.366955 111.265617 28.366955 83.898662 56.1328085 1.749216772 -0.059973 207 102 SH10150 10150 RUF6 RUF6 596 618 26.773105 69.066012 47.9195585 1.680512808 0.021043 207 103 SH8408 8408 snoRNA cluster 5 snR190 27.490056 102.040734 27.490056 75.550678 51.520367 1.711978948 -0.014204 207 104 SH19339 19339 YPL241C_16_96258_95372_INTRON_26_105 intron 27.390696 99.779133 27.390696 73.388437 50.3895665 1.702340622 0.006712 208 2 SH7545 7545 snR79 snR79 66 82 34.682263 94.844052 64.7631575 1.811328014 -0.011337 208 3 SH11456 11456 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4166 4179 249.132974 255.890314 252.511644 2.402281409 0.327555 208 4 SH13021 13021 MT COX1 COX1ai2 30.943173 105.936092 30.943173 75.992919 53.468046 1.728094313 0.202903 208 5 SH12024 12024 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7006 7024 26.98185 70.287322 48.634586 1.686945223 0.019179 208 6 SH5116 5116 snR11 snR11 181 200 29.950289 80.697066 55.3236775 1.742911041 0.081319 208 7 SH2298 2298 Phe2 86-92 + 3' flank 86 28.660615 85.119728 56.8901715 1.755037243 -0.055035 208 8 SH1653 1653 Leu5 3' flank 29.264019 95.560064 62.4120415 1.795268389 -0.198111 208 9 SH918 918 Glu3 3' flank 29.343824 84.467143 56.9054835 1.755154118 -0.003581 208 10 SH2835 2835 Pro7 5' flank 28.847869 95.214104 62.0309865 1.792608688 -0.21167 208 11 SH8087 8087 snoRNA cluster 2 3' 27.666937 104.379807 27.666937 77.71287 52.6899035 1.721727403 -0.030371 208 12 SH5315 5315 snR30 snR30 426 443 28.179901 88.94447 58.5621855 1.767617276 -0.137652 208 13 SH11314 11314 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3456 3471 15127.81064 7816.15703 11471.98384 4.059638526 0.234723 208 14 SH13201 13201 MT COX1 Exon4 45.842066 154.937624 45.842066 110.095558 77.968812 1.891920917 -0.080539 208 15 SH1957 1957 Lys2 5' flank - tRNA5 5 27.670733 74.490283 51.080508 1.708255208 0.012001 208 16 SH11045 11045 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2111 2129 13715.98304 7642.844076 10679.41356 4.028547405 0.142452 208 17 SH7836 7836 snoRNA cluster1 snR74 33.700071 137.147724 33.700071 104.447653 69.073862 1.839313739 -0.231753 208 18 SH15026 15026 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.114563 103.501302 27.114563 77.386739 52.250651 1.718091706 -0.064159 208 19 SH12769 12769 MT COX1 COX1ai1 47.748831 135.073062 47.748831 88.324231 68.036531 1.832742162 0.40098 208 20 SH11607 11607 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4921 4936 40723.1902 18952.18126 29837.68573 4.474765135 0.128122 208 21 SH1140 1140 His1 5' flank 30.799121 88.530202 59.6646615 1.775717181 -0.011475 208 22 SH2798 2798 Pro6 tRNA 81 95 31.434034 82.255172 56.844603 1.754689238 0.129565 208 23 SH9741 9741 RUF4 RUF4 481 500 26.170501 68.24505 47.2077755 1.674013536 -0.011324 208 24 SH6129 6129 snR39B 5' - 7 -14 7 27.140926 72.732873 49.9368995 1.698421574 -0.00232 208 25 SH1500 1500 Leu3 5' flank 27.942141 86.996852 57.4694965 1.759437392 -0.12471 208 26 SH21553 21553 copy of SH4566 31.181855 91.042332 61.1120935 1.786127161 -0.038231 208 27 SH6660 6660 snR48 3' 139.398108 172.971916 156.185012 2.193639355 0.274985 208 28 SH15248 15248 MT tRNA fMet tRNA 28.880579 115.793464 28.880579 87.912885 58.396732 1.766388544 -0.086733 208 29 SH19371 19371 YPR043W_16_654161_654842_INTRON_3_405 5' exon 29.686442 105.143855 29.686442 76.457413 53.0719275 1.724864861 0.11868 208 30 SH8983 8983 snR17a / U3a U3a 201 218 27.284982 94.404336 60.844659 1.784222461 -0.273006 208 31 SH1060 1060 Gly3 tRNA 36 48 35.684602 94.676914 65.180758 1.814119407 0.016597 208 32 SH8716 8716 LSR1 / U2 RNA U2 221 238 26.924784 72.957539 49.9411615 1.698458639 -0.020677 208 33 SH3997 3997 RNase MRP 3' 27.704584 86.504362 57.104473 1.756670128 -0.135113 208 34 SH963 963 Gly1 66-72 + 3' flank 66 26.788567 69.153962 47.9712645 1.680981166 0.020933 208 35 SH5659 5659 snR34 snR34 216 230 103.777265 213.065201 158.421233 2.199813389 -0.429386 208 36 SH21578 21578 copy of SH5624 26.531344 78.990812 52.761078 1.72231366 -0.12567 208 37 SH15944 15944 YDL125C_4_239605_239018_INTRON_98_208 intron 29.140218 108.586095 29.140218 80.445877 54.7930475 1.738725456 0.032777 208 38 SH11001 11001 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1891 1907 29494.03031 16581.6757 23037.853 4.362442003 -0.082437 208 39 SH6425 6425 snR45 5' 29.905236 74.540391 52.2228135 1.717860266 0.15794 208 40 SH15552 15552 YBR078W_2_393082_394818_INTRON_59_388 3' exon 28.918397 104.899364 28.918397 76.980967 52.949682 1.723863356 0.062459 208 41 SH11050 11050 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2136 2154 30.692598 76.455851 53.5742245 1.728955893 0.181503 208 42 SH17228 17228 YHR077C_8_255757_252375_INTRON_7_119 exon/intron 27.789681 99.649814 27.789681 72.860133 50.324907 1.701782981 0.041494 208 43 SH10332 10332 RUF7 RUF7 271 289 30.287788 88.792179 59.5399835 1.77480871 -0.038453 208 44 SH12937 12937 MT COX1 COX1ai2 27.400992 107.431664 27.400992 81.030672 54.215832 1.734126127 -0.090428 208 45 SH11066 11066 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2216 2233 11680.84505 6481.148813 9080.996931 3.958133529 0.193927 208 46 SH2695 2695 Pro4 3' flank 32.879592 95.009912 63.944752 1.805804907 -0.060507 208 47 SH15821 15821 YDL064W_4_337486_338069_INTRON_39_148 intron 30.39627 103.83581 30.39627 74.43954 52.417905 1.719479659 0.189982 208 48 SH13462 13462 MT COX1 intronic 25.682308 95.8169 25.682308 71.134592 48.40845 1.684921177 -0.087381 208 49 SH15533 15533 YBR078W_2_393082_394818_INTRON_59_388 5' exon 31.498624 114.862641 31.498624 84.364017 57.9313205 1.762913428 0.093151 208 50 SH21641 21641 copy of SH8351 39.346184 115.272388 77.309286 1.888231662 -0.305017 208 51 SH7979 7979 snoRNA cluster 2 snR57 39.027178 129.95228 39.027178 91.925102 65.47614 1.816083069 0.152435 208 52 SH13410 13410 MT COX1 intronic 24.382759 97.105059 24.382759 73.7223 49.0525295 1.690661408 -0.221668 208 53 SH4864 4864 snR8 snR8 101 116 30.549185 84.919482 57.7343335 1.761434157 0.042036 208 54 SH4915 4915 snR9 5' 28.041256 83.188948 55.615102 1.745192738 -0.073226 208 55 SH8714 8714 LSR1 / U2 RNA U2 211 226 29.452186 79.755041 54.6036135 1.737221384 0.061476 208 56 SH16913 16913 YGL251C_7_31636_27921_INTRON_59_210 5' exon 39.705832 147.395962 39.705832 108.69013 74.197981 1.870392088 -0.17796 208 57 SH3764 3764 Val4 tRNA 46 58 28.511144 89.265143 58.8881435 1.770027863 -0.127578 208 58 SH16539 16539 YER131W_5_423587_424307_INTRON_1_361 intron/exon 25.875343 101.47115 25.875343 76.595807 51.235575 1.709571615 -0.143939 208 59 SH13606 13606 MT ATP8/AAP1 ATP8 / 3' 29.237197 104.390472 29.237197 76.153275 52.695236 1.721771354 0.09394 208 60 SH2101 2101 Lys4 3' flank 27.12561 84.069465 55.5975375 1.745055556 -0.14632 208 61 SH338 338 Arg5 tRNA 26 43 29.163706 89.918209 59.5409575 1.774815814 -0.108566 208 62 SH4846 4846 snR8 snR8 11 29 31.338453 76.151934 53.7451935 1.730339631 0.224727 208 63 SH17413 17413 YIL106W_9_166412_167441_INTRON_21_105 intron 29.01741 106.092258 29.01741 78.074848 53.546129 1.72872808 0.054772 208 64 SH7809 7809 snoRNA cluster1 intergenic 26.170032 98.210479 26.170032 73.040447 49.6052395 1.695527551 -0.076522 208 65 SH12400 12400 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.431398 99.242875 27.431398 72.811477 50.1214375 1.700023518 0.017145 208 66 SH11103 11103 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2401 2419 53.984073 96.807486 75.3957795 1.877347036 0.321729 208 67 SH1684 1684 Leu6 5' flank - tRNA2 2 28.813972 80.864694 54.839333 1.739092164 0.006364 208 68 SH1913 1913 Lys1 tRNA 21 35 30.40632 90.519291 60.4628055 1.781488295 -0.063027 208 69 SH13375 13375 MT COX1 intronic 26.408146 91.883356 26.408146 66.47521 46.441678 1.666907903 0.031298 208 70 SH13028 13028 MT COX1 COX1ai2 26.847972 106.195724 26.847972 80.347752 53.597862 1.729147466 -0.12037 208 71 SH1253 1253 Ile2 5' flank 28.850675 85.209651 57.030163 1.756104613 -0.043638 208 72 SH83 83 Ala2 15-63 51 63 27.72046 80.399629 54.0600445 1.732876399 -0.060759 208 73 SH11995 11995 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6861 6874 49.565605 101.321638 75.4436215 1.877622528 0.154665 208 74 SH12260 12260 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.93716 108.29602 28.93716 80.35886 54.64801 1.737574352 0.020685 208 75 SH21055 21055 YMR143W spliced 27.179335 72.763581 49.971458 1.698722021 -0.000001 208 76 SH8675 8675 LSR1 / U2 RNA U2 16 32 29.054381 82.777982 55.9161815 1.747537506 -0.001394 208 77 SH5023 5023 snR10 snR10 146 160 34.828445 88.930924 61.8796845 1.791548091 0.12298 208 78 SH11087 11087 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2321 2336 41.449263 96.263804 68.8565335 1.837945155 0.10685 208 79 SH13727 13727 MT COB 5'/Exon1 25.22439 106.809498 25.22439 82.585108 53.904749 1.731627028 -0.265401 208 80 SH10012 10012 RUF6 5' 30.231982 74.647049 52.4395155 1.71965867 0.176983 208 81 SH7459 7459 snR71 5' 27.831072 95.150518 61.490795 1.788810108 -0.258663 208 82 SH9910 9910 RUF5-1 RUF5-1 356 374 27.116207 74.943505 51.029856 1.707824343 -0.032805 208 83 SH12088 12088 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7326 7343 37.655334 95.4681 66.561717 1.823224516 0.044989 208 84 SH10754 10754 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 656 674 29.921206 83.973982 56.947594 1.75547538 0.031557 208 85 SH15271 15271 MT 9S rRNA 9S 26.473321 104.515475 26.473321 79.042154 52.7577375 1.722286163 -0.130445 208 86 SH7919 7919 snoRNA cluster1 snR72 26.677864 103.618581 26.677864 77.940717 52.3092905 1.718578829 -0.101894 208 87 SH8804 8804 LSR1 / U2 RNA U2 661 680 28.621478 77.461498 53.041488 1.724615699 0.036783 208 88 SH21462 21462 copy of SH808 32.837896 89.477815 61.1578555 1.786452248 0.057843 208 89 SH19616 19616 RNA14 1.1 32.973441 94.939949 63.956695 1.805886013 -0.056575 208 90 SH14447 14447 MT 21S rRNA 21S rRNA3 26.562404 96.685353 26.562404 71.122949 48.8426765 1.688799455 -0.022334 208 91 SH9460 9460 RUF2 RUF2 141 159 29.009082 74.46638 51.737731 1.713807378 0.101609 208 92 SH4978 4978 snR10 5' 28.434104 54.752895 41.5934995 1.619025462 0.366113 208 93 SH14536 14536 MT 21S rRNA 21S rRNA3 27.50569 139.304454 27.50569 112.798764 70.152227 1.846041462 -0.561552 208 94 SH20975 20975 YML034W spliced 39.8839 91.655543 65.7697215 1.818026003 0.176358 208 95 SH14592 14592 MT 21S rRNA Sce1 endonuc 27.122824 112.56604 27.122824 86.443216 56.78302 1.754218487 -0.174392 208 96 SH15540 15540 YBR078W_2_393082_394818_INTRON_59_388 intron 27.771591 95.421065 27.771591 68.649474 48.2105325 1.683141928 0.097362 208 97 SH1791 1791 Leu8 5' flank 29.5118 92.418634 60.965217 1.785082124 -0.135116 208 98 SH18491 18491 YMR194W_13_651144_651909_INTRON_17_479 intron 28.690994 100.872917 28.690994 73.181923 50.9364585 1.707028746 0.098255 208 99 SH14726 14726 MT tRNA cys; tRNA his intergenic 33.128137 122.739023 33.128137 90.610886 61.8695115 1.791476687 0.042197 208 100 SH16506 16506 YER117W_5_396765_397649_INTRON_43_513 intron 35.058382 136.366761 35.058382 102.308379 68.6833805 1.836851662 -0.156538 208 101 SH5024 5024 snR10 snR10 151 167 25.648205 70.055818 47.8520115 1.679900198 -0.075276 208 102 SH15615 15615 YBR181C_2_592732_591670_INTRON_7_358 intron 35.951013 130.818202 35.951013 95.867189 65.909101 1.818945388 -0.002416 208 103 SH3468 3468 Trp1 3' flank 42.155056 102.11714 72.136098 1.858152647 -0.000132 208 104 SH2015 2015 Lys3 tRNA 21 33 31.134293 85.529998 58.3321455 1.76590795 0.056346 209 2 SH17049 17049 YGR214W_7_920570_921783_INTRON_91_545 intron 36.826009 138.245855 36.826009 102.419846 69.6229275 1.842752281 -0.118313 209 3 SH9249 9249 snR6 / U6 RNA 3' 26.305175 69.33322 47.8191975 1.679602284 -0.016619 209 4 SH8979 8979 snR17a / U3a U3a 181 198 161.357197 213.526319 187.441758 2.272866349 0.094346 209 5 SH15643 15643 YBR189W_2_604466_605466_INTRON_8_420 5' exon 75.058843 208.249865 75.058843 134.191022 104.6249325 2.019635191 0.018247 209 6 SH16221 16221 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 32.457863 112.387321 32.457863 80.929458 56.6936605 1.753534499 0.197599 209 7 SH13025 13025 MT COX1 COX1ai2 30.74297 113.782032 30.74297 84.039062 57.391016 1.758843913 0.066621 209 8 SH3900 3900 RNase MRP 5' 27.613704 71.869061 49.7413825 1.696717852 0.042402 209 9 SH6002 6002 snR37 5' 28.780342 75.98454 52.382441 1.719185733 0.066487 209 10 SH8945 8945 snR17a / U3a U3a 11 29 28.579662 75.746101 52.1628815 1.717361574 0.056449 209 11 SH5442 5442 snR31 3' 27.716921 86.175993 56.946457 1.755466709 -0.130466 209 12 SH6641 6641 snR48 snR48 31 47 28.259966 78.470815 53.3653905 1.727259692 -0.000129 209 13 SH21486 21486 copy of SH1852 23337.94596 11380.28001 17359.11299 4.23952753 0.206449 209 14 SH11384 11384 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3806 3826 24513.76364 12121.57983 18317.67173 4.262870272 0.17091 209 15 SH4450 4450 telomerase RNA 1286-1301 + 3' 1286 28.057373 68.221044 48.1392085 1.682498945 0.123086 209 16 SH19591 19591 AEP2/ATP13 2.1 26.319553 77.038102 51.6788275 1.713312652 -0.116683 209 17 SH10703 10703 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 401 419 28.213178 74.842073 51.5276255 1.71204013 0.044153 209 18 SH3375 3375 Thr4 5' flank 25.835691 68.980003 47.407847 1.675850233 -0.046399 209 19 SH7560 7560 snR79 3' 36.219003 73.052478 54.6357405 1.737476834 0.502755 209 20 SH17451 17451 YIL148W_9_68708_69528_INTRON_9_442 intron 26.260541 107.384884 26.260541 82.124343 54.192442 1.733938721 -0.18395 209 21 SH4179 4179 telomerase RNA 5' 27.051608 74.292841 50.6722245 1.70476997 -0.029031 209 22 SH5143 5143 snR11 3' 65.060484 105.98669 85.523587 1.932085908 0.316024 209 23 SH6587 6587 snR47 snR47 41 62 35.819824 83.75117 59.785497 1.776595844 0.26883 209 24 SH19596 19596 AEP2/ATP13 2.1 35.140623 89.83012 62.4853715 1.795778356 0.110178 209 25 SH21490 21490 copy of SH2038 36.679653 94.211832 65.4457425 1.815881399 0.050104 209 26 SH18526 18526 YMR225C_13_721402_720959_INTRON_59_205 intron 28.461226 112.373054 28.461226 84.911828 56.686527 1.75347985 -0.06574 209 27 SH4258 4258 telomerase RNA telomerase 326 343 29.637064 88.902771 59.2699175 1.772834323 -0.069447 209 28 SH20876 20876 YLR185W spliced 83.671052 131.048351 107.3597015 2.030841295 0.177545 209 29 SH1814 1814 Leu8 96-101 + 3' flank 96 31.851479 79.477595 55.664537 1.745578601 0.200363 209 30 SH14950 14950 MT tRNA Met tRNA 27.072275 104.219982 27.072275 78.147707 52.609991 1.721068228 -0.076897 209 31 SH17380 17380 YIL052C_9_257061_256224_INTRON_38_509 intron 28.647034 97.478099 28.647034 69.831065 49.2390495 1.692309661 0.140756 209 32 SH19755 19755 Negative Control 30.040478 87.150057 58.5952675 1.767862541 -0.020549 209 33 SH4362 4362 telomerase RNA telomerase 846 860 31.690195 83.747218 57.7187065 1.76131659 0.112619 209 34 SH11813 11813 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5951 5969 29.301053 81.53517 55.4181115 1.743651722 0.029681 209 35 SH20529 20529 YGR118W spliced 35.914425 89.286042 62.6002335 1.796575953 0.141132 209 36 SH3966 3966 RNase MRP RNaseMRP 246 264 27.402689 84.046441 55.724565 1.746046687 -0.126897 209 37 SH10817 10817 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 971 987 3679.758017 3196.209721 3437.983869 3.536303835 -0.19075 209 38 SH2725 2725 Pro5 tRNA 6 22 79.907381 142.410285 111.158833 2.045943979 -0.022608 209 39 SH21906 21906 copy of SH19401 29.925888 82.673906 56.299897 1.7505076 0.055552 209 40 SH10940 10940 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1586 1601 34.740774 90.364176 62.552475 1.796244498 0.08836 209 41 SH6510 6510 snR46 snR46 41 58 28.85989 75.595992 52.227941 1.717902905 0.07682 209 42 SH18458 18458 YMR143W_13_551927_552902_INTRON_25_568 intron 29.735659 103.537567 29.735659 74.801908 52.2687835 1.718242392 0.143719 209 43 SH17355 17355 YIL052C_9_257061_256224_INTRON_38_509 5' exon 53.465255 164.812075 53.465255 112.34682 82.9060375 1.918586159 0.016918 209 44 SH12270 12270 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.353612 115.238104 29.353612 86.884492 58.119052 1.764318522 -0.046785 209 45 SH3143 3143 Ser4 3' flank 28.729993 72.651964 50.6909785 1.704930675 0.108091 209 46 SH17994 17994 YLR287C-A_12_713158_712537_INTRON_4_433 intron 26.361901 105.722468 26.361901 80.360567 53.361234 1.727225864 -0.154955 209 47 SH10363 10363 RUF7 RUF7 426 443 30.915194 88.05032 59.482757 1.77439109 0.001968 209 48 SH18499 18499 YMR194W_13_651144_651909_INTRON_17_479 intron 26.052971 97.380068 26.052971 72.327097 49.190034 1.691877123 -0.075738 209 49 SH15948 15948 YDL125C_4_239605_239018_INTRON_98_208 intron 27.33915 109.192445 27.33915 82.853295 55.0962225 1.741121824 -0.116956 209 50 SH17114 17114 YHR010W_8_126513_127484_INTRON_32_592 5' exon 57.307613 179.932572 57.307613 123.624959 90.466286 1.956486761 -0.102478 209 51 SH6844 6844 snR52 3' 30.095668 85.662298 57.878983 1.762520891 0.008545 209 52 SH4617 4617 snR3 snR3 1 19 42.556796 112.902871 77.7298335 1.890587737 -0.195659 209 53 SH6018 6018 snR37 snR37 6 23 27.863354 76.129346 51.99635 1.715972858 0.00357 209 54 SH2228 2228 Phe1 tRNA 16 28 42.006779 101.983361 71.99507 1.857302758 -0.000493 209 55 SH4301 4301 telomerase RNA telomerase 541 558 25.31084 74.909627 50.1102335 1.699926426 -0.165058 209 56 SH542 542 Cys1 tRNA 11 23 44.144445 123.843087 83.993766 1.924247054 -0.348664 209 57 SH718 718 Gln3 3' flank 28.595188 78.091524 53.343356 1.727080335 0.026941 209 58 SH15487 15487 YBL092W_2_45639_46364_INTRON_1_333 intron 34.568762 123.846263 34.568762 90.277501 62.4231315 1.795345552 0.086066 209 59 SH5385 5385 snR31 5' - 8 -9 8 31.073013 86.74278 58.9078965 1.770173515 0.031928 209 60 SH9271 9271 RUF1 5' 26.593295 77.857647 52.225471 1.717882365 -0.106911 209 61 SH3096 3096 Ser3 3' flank 30.78414 85.737535 58.2608375 1.765376723 0.037459 209 62 SH6609 6609 snR47 3' 28.517961 84.10651 56.3122355 1.750602768 -0.052447 209 63 SH18173 18173 YLR448W_12_1028848_1029762_INTRON_16_399 intron 31.081143 122.116348 31.081143 92.035205 61.558174 1.789285729 -0.05934 209 64 SH14123 14123 MT COB intronic 26.424772 96.839382 26.424772 71.41461 48.919691 1.689483705 -0.036266 209 65 SH8652 8652 LSR1 / U2 RNA 5' 39.632064 92.420222 66.026143 1.819715928 0.154009 209 66 SH8443 8443 snoRNA cluster 5 snR128 30.36877 108.943945 30.36877 79.575175 54.9719725 1.740141321 0.12148 209 67 SH422 422 Asp1 5' flank 28.582105 71.108593 49.845349 1.697624641 0.11899 209 68 SH12303 12303 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.441037 120.674907 31.441037 90.23387 60.8374535 1.784171027 -0.013353 209 69 SH6646 6646 snR48 snR48 56 73 32.003876 78.908816 55.456346 1.743951251 0.217862 209 70 SH19091 19091 YOR312C_15_901173_900242_INTRON_2_427 exon/intron 27.577091 107.359865 27.577091 80.782774 54.1799325 1.73383846 -0.07529 209 71 SH9243 9243 snR6 / U6 RNA U6 86 107 28.125342 83.012423 55.5688825 1.744831663 -0.065458 209 72 SH18532 18532 YMR230W_13_732413_733140_INTRON_53_462 5' exon 30.037468 119.340643 30.037468 90.303175 60.1703215 1.779382332 -0.075664 209 73 SH19506 19506 ACT1 35.249062 86.95296 61.101011 1.786048396 0.178916 209 74 SH12852 12852 MT COX1 COX1ai1 41.736541 147.271665 41.736541 106.535124 74.1358325 1.870028169 -0.09459 209 75 SH12819 12819 MT COX1 COX1ai1 24.972793 99.670293 24.972793 75.6975 50.3351465 1.701871337 -0.200991 209 76 SH10929 10929 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1531 1544 31.169032 86.467283 58.8181575 1.769511416 0.040978 209 77 SH5828 5828 snR35 snR35 326 343 28.394193 75.096638 51.7454155 1.713871879 0.052804 209 78 SH5472 5472 snR32 snR32 21 40 27.455415 82.038556 54.7469855 1.738360211 -0.099066 209 79 SH17356 17356 YIL052C_9_257061_256224_INTRON_38_509 5' exon 27.183028 110.555979 27.183028 84.372951 55.7779895 1.746462856 -0.145944 209 80 SH3270 3270 Thr2 5' flank 27.50558 78.859421 53.1825005 1.725768753 -0.056056 209 81 SH15486 15486 YBL092W_2_45639_46364_INTRON_1_333 intron 26.833699 109.319773 26.833699 83.486074 55.1598865 1.741623364 -0.159734 209 82 SH21080 21080 YMR230W spliced 30.134052 78.529698 54.331875 1.735054693 0.120102 209 83 SH8990 8990 snR17a / U3a U3a 236 252 51.543074 115.021463 83.2822685 1.920552546 -0.063052 209 84 SH12692 12692 MT ORF 8 (hypothetical) 5' 24.860805 94.889008 24.860805 71.028203 47.944504 1.68073883 -0.148552 209 85 SH11429 11429 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4031 4044 3551.470272 2305.693405 2928.581839 3.466657365 0.280104 209 86 SH20496 20496 YGL251C spliced 30.391032 88.719262 59.555147 1.774919301 -0.032627 209 87 SH17820 17820 YKR057W_11_551293_551878_INTRON_25_346 intron 28.169322 99.198055 28.169322 72.028733 50.0990275 1.699829296 0.078638 209 88 SH20460 20460 YGL178W spliced 28.031706 78.606575 53.3191405 1.72688314 -0.01714 209 89 SH10898 10898 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1376 1389 37.980006 81.601674 59.79084 1.776634655 0.371679 209 90 SH11564 11564 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4706 4723 278.045979 241.910526 259.9782525 2.41493702 0.556406 209 91 SH3175 3175 Ser5 5' flank - tRNA11 11 104.144632 137.376391 120.7605115 2.081924944 0.331991 209 92 SH4037 4037 SRP RNA SRP RNA 76 95 30.343631 105.182125 67.762878 1.830991843 -0.335655 209 93 SH2639 2639 Pro3 3' flank 27.206111 82.152395 54.679253 1.737822573 -0.117641 209 94 SH10668 10668 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 226 243 28.538483 116.122342 72.3304125 1.859320942 -0.589014 209 95 SH9302 9302 RUF1 RUF1 86 102 32.876456 135.548277 84.2123665 1.925375872 -0.787632 209 96 SH8038 8038 snoRNA cluster 2 snR55/intergenic 27.420498 130.660071 27.420498 104.239573 65.8300355 1.818424089 -0.419688 209 97 SH4850 4850 snR8 snR8 31 47 37.324289 84.56437 60.9443295 1.784933303 0.284373 209 98 SH8473 8473 snoRNA cluster 5 3' 28.637917 110.936208 28.637917 83.298291 55.968104 1.747940595 -0.034871 209 99 SH6958 6958 snR58 3' 28.474936 69.969591 49.2222635 1.692161581 0.127251 209 100 SH16939 16939 YGR027C_7_534779_534126_INTRON_1_312 intron 30.257714 110.652889 30.257714 81.395175 55.8264445 1.746839969 0.091936 209 101 SH11150 11150 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2636 2654 21749.02307 13737.37576 17743.19942 4.249031934 -0.18301 209 102 SH3185 3185 Ser5 tRNA 46 58 31.152096 81.682808 56.417452 1.751413468 0.128309 209 103 SH3532 3532 Tyr2 5' flank 26.465201 79.857813 53.161507 1.725597284 -0.141302 209 104 SH3208 3208 Ser5 3' flank 27.403305 74.188582 50.7959435 1.705829031 -0.002808 210 2 SH4610 4610 snR3 5' 28.054855 77.621863 52.838359 1.722949321 -0.002963 210 3 SH2541 2541 Pro2 5' flank 30.890011 87.587578 59.2387945 1.772606212 0.009029 210 4 SH8269 8269 snoRNA cluster4 snR67 31.412311 121.481194 31.412311 91.068883 61.240597 1.787039416 -0.028826 210 5 SH10920 10920 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1486 1505 131.14644 160.941862 146.044151 2.164484168 0.324922 210 6 SH2946 2946 Ser1 5' flank 28.100366 81.375075 54.7377205 1.738286708 -0.047186 210 7 SH20505 20505 YGR027C spliced 30.613196 75.807678 53.210437 1.725996826 0.185146 210 8 SH15571 15571 YBR084C-A_2_415219_414144_INTRON_3_508 intron 28.34746 108.053026 28.34746 80.705566 54.526513 1.736607725 -0.022419 210 9 SH12126 12126 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7516 7531 42.97124 107.278369 75.1248045 1.875783355 -0.083704 210 10 SH18352 18352 YML124C_13_23684_22049_INTRON_26_323 3' exon 28.238066 101.191743 28.238066 73.953677 51.0958715 1.708385811 0.05777 210 11 SH9766 9766 RUF4 RUF4 606 624 27.582936 80.680034 54.131485 1.733449941 -0.073616 210 12 SH7055 7055 snR62 snR62 66 83 34.638001 89.503265 62.070633 1.792886174 0.105267 210 13 SH6199 6199 snR40 snR40 56 71 46.017976 90.450236 68.234106 1.834001506 0.321366 210 14 SH9779 9779 RUF4 RUF4 671 685 27.553073 86.926053 57.239563 1.757696309 -0.150314 210 15 SH17945 17945 YLR128W_12_398531_399434_INTRON_4_97 intron 26.330037 93.345845 26.330037 68.015808 47.1729225 1.673692783 0.003609 210 16 SH10634 10634 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 56 71 33.036091 93.931716 63.4839035 1.802663623 -0.033272 210 17 SH9183 9183 snR7 U5 RNA U5 186 202 39.468677 88.067072 63.7678745 1.804601941 0.249705 210 18 SH13230 13230 MT COX1 COX1-ai4 25.54853 93.892053 25.54853 69.343523 47.4460265 1.676199847 -0.072968 210 19 SH11114 11114 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2456 2473 79.234594 126.997446 103.11602 2.013326142 0.17623 210 20 SH11520 11520 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4486 4508 188.108388 188.739076 188.423732 2.275135601 0.486825 210 21 SH13222 13222 MT COX1 COX1-ai4 29.72344 108.596125 29.72344 79.872685 54.7980625 1.738765203 0.077274 210 22 SH5980 5980 snR36 3' 25.320031 69.387742 47.3538865 1.675355629 -0.090881 210 23 SH13469 13469 MT COX1 intronic 27.199472 116.968311 27.199472 90.768839 58.9841555 1.770735366 -0.217962 210 24 SH16117 16117 YDR064W_4_579453_580447_INTRON_22_560 intron 26.638236 92.297493 26.638236 66.659257 46.6487465 1.668839978 0.045352 210 25 SH20992 20992 YML073C spliced 32.353238 92.022586 62.187912 1.793705975 -0.009427 210 26 SH21638 21638 copy of SH8143 47.699307 106.310423 77.004865 1.886518164 0.024631 210 27 SH267 267 Arg4 5' flank 25.186483 73.274755 49.230619 1.692235296 -0.153368 210 28 SH12416 12416 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.527498 105.117512 28.527498 77.590014 53.058756 1.724757063 0.028926 210 29 SH9949 9949 RUF5-1 RUF5-1 551 567 29.056298 76.69362 52.874959 1.723250044 0.075167 210 30 SH8080 8080 snoRNA cluster 2 snR61/3' 26.629217 96.885369 26.629217 71.256152 48.9426845 1.689687787 -0.019292 210 31 SH10439 10439 RUF8 RUF8 121 137 35.07454 87.493755 61.2841475 1.787348149 0.162083 210 32 SH19895 19895 snR17A spliced 59.787999 117.706622 88.7473105 1.948155201 0.032727 210 33 SH3917 3917 RNase MRP RNaseMRP 1 18 33.692024 94.344091 64.0180575 1.806302492 -0.025363 210 34 SH20301 20301 YEL012W spliced 34.12941 90.77016 62.449785 1.795530948 0.064082 210 35 SH19257 19257 YPL143W_16_282121_282969_INTRON_20_544 5' exon 28.260206 108.071924 28.260206 80.811718 54.535962 1.736682978 -0.029544 210 36 SH5168 5168 snR13 5' - 12 -4 12 30.312773 80.429926 55.3713495 1.743285108 0.107306 210 37 SH18446 18446 YMR142C_13_551206_550205_INTRON_5_406 intron 26.500903 99.679117 26.500903 74.178214 50.3395585 1.701909402 -0.067159 210 38 SH15920 15920 YDL083C_4_307788_306925_INTRON_25_456 intron/exon 40.0625 136.635715 40.0625 97.573215 68.8178575 1.837701148 0.050984 210 39 SH14948 14948 MT tRNA Met 5' / tRNA 25.085358 98.548279 25.085358 74.462921 49.7741395 1.697003761 -0.176551 210 40 SH7422 7422 snR69 snR69 11 25 45.522075 100.455006 72.9885405 1.863254679 0.099015 210 41 SH20693 20693 YIL148W spliced 30.791918 91.338887 61.0654025 1.785795224 -0.060104 210 42 SH13793 13793 MT COB intronic 27.101057 97.812354 27.101057 71.711297 49.406177 1.69378125 0.008423 210 43 SH15810 15810 YDL061C_4_341182_340627_INTRON_1_408 intron 29.458952 115.779933 29.458952 87.320981 58.3899665 1.766338226 -0.049743 210 44 SH7703 7703 snoRNA cluster1 intergenic/snR77 26.503007 92.745652 26.503007 67.242645 46.872826 1.670921138 0.027189 210 45 SH17958 17958 YLR185W_12_522665_523290_INTRON_8_366 intron 44.158312 138.712717 44.158312 95.554405 69.8563585 1.844205943 0.174389 210 46 SH7025 7025 snR62 5' 30.66394 91.469569 61.0667545 1.785804839 -0.06789 210 47 SH18077 18077 YLR344W_12_819312_820142_INTRON_20_466 intron 26.419905 105.286014 26.419905 79.866109 53.143007 1.725446125 -0.144634 210 48 SH8384 8384 snoRNA cluster 5 5'/snR190 30.493506 118.61393 30.493506 89.120424 59.806965 1.776751764 -0.035101 210 49 SH2622 2622 Pro3 tRNA-intron/exon 61 75 38.403703 103.229823 70.816763 1.850136071 -0.100047 210 50 SH6091 6091 snR37 371-386 + 3' 371 26.715675 82.078791 54.397233 1.735576809 -0.151019 210 51 SH6197 6197 snR40 snR40 46 61 30.467811 85.238256 57.8530335 1.762326136 0.03267 210 52 SH930 930 Gly1 5' flank 24.057589 67.920304 45.9889465 1.662653461 -0.165299 210 53 SH4905 4905 snR9 5' 25.973536 77.780828 51.877182 1.714976377 -0.151377 210 54 SH14585 14585 MT 21S rRNA intronic 36.280347 130.28024 36.280347 94.999893 65.64012 1.817169366 0.023833 210 55 SH21401 21401 Pro8 spliced 28.164611 79.189657 53.677134 1.729789319 -0.015627 210 56 SH11888 11888 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6326 6343 103.525922 153.643447 128.5846845 2.109189244 0.129414 210 57 SH17944 17944 YLR128W_12_398531_399434_INTRON_4_97 exon/intron 27.289132 110.494939 27.289132 84.205807 55.7474695 1.746225159 -0.136618 210 58 SH4897 4897 snR8 3' 30.476166 78.74463 54.610398 1.737275342 0.138637 210 59 SH12929 12929 MT COX1 COX1ai2 228.39293 541.223738 228.39293 313.830808 271.111869 2.433148531 -0.114983 210 60 SH7034 7034 snR62 5' 30.931056 86.597693 58.7643745 1.769114118 0.028389 210 61 SH6310 6310 snR42 snR42 331 345 44.044444 109.680984 76.862714 1.885715715 -0.107486 210 62 SH10943 10943 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1601 1616 32.565614 85.889043 59.2273285 1.772522144 0.110024 210 63 SH4576 4576 U3b (snR17b) U3b 436 450 120.789941 163.489468 142.1397045 2.152715408 0.201076 210 64 SH12776 12776 MT COX1 COX1ai1 26.531291 98.053102 26.531291 72.521811 49.526551 1.694838085 -0.043282 210 65 SH11956 11956 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6666 6681 1240.767568 1105.69118 1173.229374 3.069382928 0.057261 210 66 SH10044 10044 RUF6 RUF6 66 85 28.858563 84.134696 56.4966295 1.752022539 -0.030412 210 67 SH3264 3264 Thr2 5' flank 29.252423 77.949004 53.6007135 1.729170571 0.071586 210 68 SH1650 1650 Leu5 3' flank 29.758365 82.198611 55.978488 1.748021164 0.050747 210 69 SH16719 16719 YGL031C_7_438393_437938_INTRON_1_456 3' exon 27.812057 107.36848 27.812057 80.556423 54.18424 1.733872986 -0.056494 210 70 SH1069 1069 Gly3 3' flank 27.861639 74.803114 51.3323765 1.710391371 0.02105 210 71 SH10259 10259 RUF7 5' 29.547264 78.861955 54.2046095 1.73403622 0.078824 210 72 SH21757 21757 copy of SH13182 30.563688 80.921042 55.742365 1.746185391 0.116743 210 73 SH20936 20936 YLR406C spliced 27.449158 77.616536 52.532847 1.720430938 -0.044019 210 74 SH16119 16119 YDR064W_4_579453_580447_INTRON_22_560 intron 27.401269 103.185791 27.401269 76.784522 52.0928955 1.716778498 -0.036519 210 75 SH10183 10183 RUF6 RUF6 761 776 29.814119 90.533241 60.17368 1.779406572 -0.08959 210 76 SH491 491 Asp2 tRNA 16 30 701.656907 1020.012746 860.8348265 2.934919829 -0.565067 210 77 SH10277 10277 RUF7 5' - 12 -4 12 28.786101 84.065685 56.425893 1.751478441 -0.034328 210 78 SH10115 10115 RUF6 RUF6 421 442 52.653434 143.143251 97.8983425 1.990775339 -0.464093 210 79 SH5960 5960 snR36 snR36 256 275 25.899988 82.138485 54.0192365 1.732548442 -0.210171 210 80 SH15546 15546 YBR078W_2_393082_394818_INTRON_59_388 intron 26.748788 104.963271 26.748788 79.214483 52.9816355 1.72412536 -0.113121 210 81 SH9977 9977 RUF5-1 RUF5-1 691 708 32.029369 91.446037 61.737703 1.790550467 -0.009183 210 82 SH9440 9440 RUF2 RUF2 41 57 43.876227 102.96242 73.4193235 1.865810379 0.017447 210 83 SH9349 9349 RUF1 RUF1 321 340 25.901799 70.866181 48.38399 1.68470168 -0.067364 210 84 SH15225 15225 MT COX3 cox3 25.665919 99.985397 25.665919 75.319478 50.4926985 1.703228581 -0.143464 210 85 SH6821 6821 snR52 snR52 11 28 6473.484385 4734.155456 5603.819921 3.748484171 -0.077659 210 86 SH6600 6600 snR47 3' 49.779258 122.9718 86.375529 1.93639072 -0.225856 210 87 SH9974 9974 RUF5-1 RUF5-1 676 697 25.376798 84.289046 54.832922 1.73904139 -0.274499 210 88 SH5794 5794 snR35 snR35 156 177 27.619179 72.506136 50.0626575 1.6995139 0.034316 210 89 SH8809 8809 LSR1 / U2 RNA U2 686 700 27.458778 79.645689 53.5522335 1.728777589 -0.069198 210 90 SH14758 14758 MT ORF11; tRNA Leu; tRNA Gln ORF11 31.939239 112.11076 31.939239 81.171521 56.55538 1.752473925 0.171421 210 91 SH4210 4210 telomerase RNA telomerase 86 103 26.753925 56.572452 41.6631885 1.619752504 0.219043 210 92 SH15217 15217 MT COX3 cox3 29.9431 129.933334 29.9431 100.990234 65.466667 1.816020231 -0.264426 210 93 SH3669 3669 Val2 3' flank 27.026577 80.803803 53.91519 1.73171114 -0.113544 210 94 SH19568 19568 AEP2/ATP13 0.6 42.21712 98.379484 70.298302 1.846944835 0.077111 210 95 SH692 692 Gln3 5' flank - tRNA5 5' flank 5 39.229774 114.875877 77.0528255 1.886788569 -0.300568 210 96 SH10307 10307 RUF7 RUF7 146 158 729.563966 546.731801 638.1478835 2.804921333 0.472276 210 97 SH991 991 Gly2 5' flank 26.21307 81.942561 54.0778155 1.73301914 -0.185141 210 98 SH1558 1558 Leu4 5' flank 28.709898 83.959774 56.334836 1.750777034 -0.03806 210 99 SH11781 11781 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5791 5806 292.294989 262.446736 277.3708625 2.443060837 0.486165 210 100 SH9608 9608 RUF3 426-431 + 3' 426 27.759408 78.328292 53.04385 1.724635038 -0.031982 210 101 SH16098 16098 YDR059C_4_569765_569229_INTRON_48_137 intron 29.364381 103.676486 29.364381 75.312105 52.338243 1.718819139 0.113239 210 102 SH19185 19185 YPL079W_16_406631_407534_INTRON_12_432 intron 28.905558 112.974374 28.905558 85.068816 56.987187 1.75577722 -0.038401 210 103 SH10802 10802 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 896 909 358.561058 392.04593 375.303494 2.574382608 0.095598 210 104 SH17818 17818 YKR057W_11_551293_551878_INTRON_25_346 intron 35.521561 142.758077 35.521561 108.236516 71.8790385 1.856602259 -0.261922 211 2 SH11873 11873 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6251 6266 2724.89736 1844.469307 2284.683334 3.358826014 0.28758 211 3 SH13624 13624 MT ATP6 ATP6 26.229376 98.674926 26.229376 73.44555 49.837463 1.697555926 -0.077467 211 4 SH6113 6113 snR39B 5' 24.427219 70.399319 47.413269 1.6758999 -0.173229 211 5 SH553 553 Cys1 66-72 + 3' flank 66 3' flank 27.129887 66.47839 46.8041385 1.670284256 0.083179 211 6 SH999 999 Gly2 5' flank - tRNA3 3 30.097402 93.972568 62.034985 1.792636682 -0.134613 211 7 SH13570 13570 MT COX1 Exon 6 28.282255 107.1139 28.282255 79.831645 54.05695 1.732851538 -0.015857 211 8 SH17577 17577 YJL191W_10_73786_74610_INTRON_11_418 intron 32.725545 115.20313 32.725545 83.477585 58.101565 1.764187831 0.160636 211 9 SH7816 7816 snoRNA cluster1 intergenic 30.366885 115.950626 30.366885 86.583741 58.475313 1.766972555 0.004001 211 10 SH10543 10543 RUF8 RUF8 641 662 25.843739 70.435042 48.1393905 1.682500587 -0.06583 211 11 SH16224 16224 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 25.324062 88.799925 25.324062 64.475863 44.8999625 1.652245978 -0.016514 211 12 SH4317 4317 telomerase RNA telomerase 621 635 32.709823 74.27502 53.4924215 1.728292258 0.330412 211 13 SH20682 20682 YIL111W spliced 25.60618 56.5864 41.09629 1.613802617 0.137357 211 14 SH9887 9887 RUF5-1 RUF5-1 241 258 33.960508 61.517133 47.7388205 1.678871685 0.589799 211 15 SH17821 17821 YKR057W_11_551293_551878_INTRON_25_346 intron 24.178009 80.757663 24.178009 57.579654 40.8788315 1.611498473 0.015286 211 16 SH925 925 Glu3 3' flank 26.511253 70.601219 48.556236 1.686245014 -0.018981 211 17 SH17297 17297 YHR141C_8_382752_381991_INTRON_5_445 intron 26.533709 93.932543 26.533709 68.398834 47.4662715 1.676385119 0.01306 211 18 SH12039 12039 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7081 7098 26.535952 73.377973 49.9569625 1.698596024 -0.054205 211 19 SH15085 15085 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.695807 100.344548 26.695807 74.648741 50.672274 1.704770394 -0.059115 211 20 SH19178 19178 YPL079W_16_406631_407534_INTRON_12_432 intron 27.002028 94.721297 27.002028 68.719269 47.8606485 1.679978579 0.042269 211 21 SH21782 21782 copy of SH14232 31.642825 94.918997 63.280911 1.801272723 -0.091334 211 22 SH16042 16042 YDL191W_4_117665_118518_INTRON_4_494 intron 31.66187 105.490003 31.66187 74.828133 53.2450015 1.726278844 0.26163 211 23 SH9777 9777 RUF4 RUF4 661 673 33.890226 77.84877 55.869498 1.747174769 0.315435 211 24 SH7849 7849 snoRNA cluster1 snR74/intergenic 24.968686 103.058391 24.968686 79.089705 52.0291955 1.716247111 -0.243374 211 25 SH4854 4854 snR8 snR8 51 65 557.104411 508.184047 532.644229 2.726437226 0.241403 211 26 SH20827 20827 YKR094C spliced 31.256087 94.10594 62.6810135 1.79713601 -0.086248 211 27 SH10241 10241 RUF6 1051 + 3' 1051 29.7841 82.047144 55.915622 1.74753316 0.054223 211 28 SH6302 6302 snR42 snR42 291 308 28.21643 77.401301 52.8088655 1.722706838 0.010706 211 29 SH7346 7346 snR68 5' 28.326205 77.241328 52.7837665 1.722500377 0.020094 211 30 SH4278 4278 telomerase RNA telomerase 426 440 30.301583 82.087012 56.1942975 1.749692246 0.083623 211 31 SH9484 9484 RUF2 261-268 + 3' 261 27.813311 72.127986 49.9706485 1.698714986 0.052822 211 32 SH11199 11199 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2881 2901 29.827937 79.163884 54.4959105 1.736363913 0.092811 211 33 SH1415 1415 Leu1 3' flank 27.376981 82.014365 54.695673 1.73795297 -0.104161 211 34 SH14380 14380 MT ORF9 and ORF10 (hypothetical) ORF10 / 3' 24.580909 100.038405 24.580909 76.457496 50.5192025 1.703456486 -0.241038 211 35 SH6985 6985 snR60 snR60 6 24 194.908823 235.144997 215.02691 2.332492814 0.163732 211 36 SH8217 8217 snoRNA cluster 3; snR51 50.986892 162.468902 50.986892 112.48201 81.734451 1.91240515 -0.028263 211 37 SH2261 2261 Phe2 5' flank 28.291935 71.111529 49.701732 1.696371523 0.0993 211 38 SH13244 13244 MT COX1 COX1-ai4 31.129049 116.617795 31.129049 86.488746 58.8088975 1.769443038 0.038877 211 39 SH8040 8040 snoRNA cluster 2 intergenic 25.207572 96.512167 25.207572 72.304595 48.7560835 1.688028812 -0.138967 211 40 SH6752 6752 snR50 5' 30.043319 86.905381 58.47435 1.766965403 -0.016073 211 41 SH21016 21016 YMR033W spliced 26.353086 75.660583 51.0068345 1.707628372 -0.096918 211 42 SH6213 6213 snR40 3' 29.230347 83.313236 56.2717915 1.750290742 0.00353 211 43 SH13227 13227 MT COX1 COX1-ai4 29.054199 110.271488 29.054199 82.217289 55.635744 1.7453539 0.005399 211 44 SH10080 10080 RUF6 RUF6 246 263 28.344348 85.481504 56.912926 1.755210914 -0.080188 211 45 SH17959 17959 YLR185W_12_522665_523290_INTRON_8_366 intron 32.417158 121.202605 32.417158 89.785447 61.1013025 1.786050468 0.035274 211 46 SH14184 14184 MT COB Exon6 28.307988 99.187159 28.307988 71.879171 50.0935795 1.699782066 0.090089 211 47 SH20676 20676 YIL106W spliced 28.668896 76.239885 52.4543905 1.719781845 0.055817 211 48 SH5129 5129 snR11 246-258 + 3' 246 30.671886 76.520131 53.5960085 1.729132447 0.179389 211 49 SH17406 17406 YIL069C_9_232366_231550_INTRON_4_412 3' exon 34.427579 113.406193 34.427579 79.978614 57.2030965 1.757419539 0.294736 211 50 SH9463 9463 RUF2 RUF2 156 173 29.425237 83.698143 56.56169 1.752522377 0.011436 211 51 SH21800 21800 copy of SH15070 26.910748 80.041157 53.4759525 1.728158529 -0.112142 211 52 SH20820 20820 YKR057W spliced 41.50061 98.768119 70.1343645 1.845930866 0.054895 211 53 SH364 364 Asn1 5' flank 28.537528 80.278484 54.408006 1.73566281 -0.004516 211 54 SH2547 2547 Pro2 5' flank 26.662944 72.887223 49.7750835 1.697011997 -0.038572 211 55 SH4914 4914 snR9 5' 29.34055 71.430794 50.385672 1.702307055 0.164685 211 56 SH18463 18463 YMR143W_13_551927_552902_INTRON_25_568 intron 27.719759 113.145018 27.719759 86.425259 57.072509 1.756426965 -0.133165 211 57 SH9702 9702 RUF4 RUF4 286 303 30.433558 83.144103 56.7888305 1.754262925 0.069645 211 58 SH20699 20699 YJL001W spliced 28.788564 88.814748 58.801656 1.769389557 -0.106793 211 59 SH15338 15338 YAL030W_1_87288_87754_INTRON_103_215 intron 26.918154 102.281853 26.918154 76.363699 51.6409265 1.712994025 -0.064937 211 60 SH16122 16122 YDR064W_4_579453_580447_INTRON_22_560 intron 26.746656 104.231763 26.746656 78.485107 52.6158815 1.721116851 -0.10401 211 61 SH20897 20897 YLR306W spliced 28.456836 83.495857 55.9763465 1.748004549 -0.049194 211 62 SH17325 17325 YIL004C_9_348502_347943_INTRON_12_142 intron 28.176856 95.669098 28.176856 68.492242 48.334549 1.684257671 0.127462 211 63 SH3837 3837 RNaseP RNaseP 151 163 30.682481 87.012603 58.847542 1.769728328 0.010195 211 64 SH8350 8350 snoRNA cluster4 snR53/3' 31.150823 132.828364 31.150823 102.677541 66.914182 1.825518173 -0.264276 211 65 SH2586 2586 Pro2 3' flank 29.131159 77.099007 53.115083 1.725217864 0.074737 211 66 SH12843 12843 MT COX1 COX1ai1 31.678425 123.194861 31.678425 92.516436 62.0974305 1.79307363 -0.041931 211 67 SH4328 4328 telomerase RNA telomerase 676 695 539.170992 671.436882 605.303937 2.781973499 -0.245929 211 68 SH4933 4933 snR9 snR9 71 83 133.718355 209.651215 171.684785 2.234731809 -0.100335 211 69 SH4303 4303 telomerase RNA telomerase 551 570 30.159427 77.546341 53.852884 1.731208966 0.134305 211 70 SH3340 3340 Thr3 tRNA 46 63 30.11782 72.990733 51.5542765 1.712264696 0.19232 211 71 SH15013 15013 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.623376 118.860764 29.623376 90.237388 59.930382 1.777647046 -0.093116 211 72 SH420 420 Asp1 5' flank 28.730566 72.425159 50.5778625 1.703960471 0.111259 211 73 SH6993 6993 snR60 snR60 46 65 37.004403 92.112797 64.5586 1.809954104 0.103393 211 74 SH4334 4334 telomerase RNA telomerase 706 725 25.874515 74.496587 50.185551 1.700578697 -0.117335 211 75 SH8325 8325 snoRNA cluster4 intergenic 28.236566 102.432368 28.236566 75.195802 51.716184 1.713626472 0.040993 211 76 SH6473 6473 snR45 3' 32.364458 82.383544 57.374001 1.758715137 0.166194 211 77 SH5490 5490 snR32 snR32 111 127 29.525894 83.325425 56.4256595 1.751476644 0.022339 211 78 SH14303 14303 MT VAR1 includes 5’ processing site VAR1 27.076144 111.278503 27.076144 85.202359 56.1392515 1.749266618 -0.163161 211 79 SH14293 14293 MT VAR1 includes 5’ processing site VAR1 26.901692 101.02517 26.901692 75.123478 51.012585 1.707677331 -0.050403 211 80 SH1969 1969 Lys2 tRNA 46 60 200.065819 265.189195 232.627507 2.366661067 -0.003175 211 81 SH11134 11134 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2556 2571 41.831997 94.790228 68.3111125 1.834491358 0.14623 211 82 SH19382 19382 YPR043W_16_654161_654842_INTRON_3_405 intron 25.362213 96.118581 25.362213 71.756368 48.5592905 1.686272333 -0.119885 211 83 SH9451 9451 RUF2 RUF2 96 110 25.983032 86.445599 56.2143155 1.749846927 -0.25531 211 84 SH7968 7968 snoRNA cluster 2 5' 26.575984 102.35153 26.575984 76.775546 51.675765 1.713286915 -0.094735 211 85 SH20972 20972 YML034W spliced 28.87581 70.170846 49.523328 1.694809822 0.151417 211 86 SH20203 20203 YDR025W spliced 71.55775 125.088025 98.3228875 1.992654624 0.098303 211 87 SH3746 3746 Val4 5' flank 26.886527 69.183135 48.034831 1.681556267 0.027558 211 88 SH12578 12578 MT_15S MT_15S 26.926273 90.948676 26.926273 65.022403 45.974338 1.662515484 0.089921 211 89 SH962 962 Gly1 61-72 + 3' flank 61 29.081693 74.778189 51.929941 1.715417829 0.102136 211 90 SH15886 15886 YDL082W_4_308423_309387_INTRON_5_369 intron 38.07398 115.296449 38.07398 78.222469 58.1482245 1.764536459 0.459674 211 91 SH16126 16126 YDR064W_4_579453_580447_INTRON_22_560 intron 27.505259 85.527843 27.505259 59.022584 43.2639215 1.636125882 0.227725 211 92 SH13280 13280 MT COX1 Exon 5a 29.650327 132.162795 29.650327 103.512468 66.5813975 1.823352906 -0.322918 211 93 SH15701 15701 YBR220C_2_663261_662457_INTRON_302_722 intron 29.202148 139.811044 29.202148 111.608896 70.405522 1.847606723 -0.488862 211 94 SH13349 13349 MT COX1 COX1-ai5a / intronic 28.845741 128.328597 28.845741 100.482856 64.6642985 1.810664571 -0.295087 211 95 SH18251 18251 YML034W_13_209525_212155_INTRON_1921_2046 intron 29.223182 87.744951 29.223182 59.521769 44.3724755 1.647113658 0.33241 211 96 SH12672 12672 MT tRNA Trp 5' 28.025564 102.552247 28.025564 75.526683 51.7761235 1.714129532 0.022465 211 97 SH17222 17222 YHR041C_8_189855_189122_INTRON_15_115 intron 28.718786 94.34629 28.718786 66.627504 47.673145 1.678273803 0.190637 211 98 SH20376 20376 YER179W spliced 30.934385 96.899693 63.917039 1.805616648 -0.152626 211 99 SH270 270 Arg4 5' flank 28.07336 75.988693 52.0310265 1.716262394 0.019569 211 100 SH20639 20639 YHR141C spliced 33.970464 89.131196 61.55083 1.789233914 0.097093 211 101 SH20911 20911 YLR333C spliced 29.106195 80.226007 54.666101 1.737718099 0.033316 211 102 SH7306 7306 snR66 snR66 21 36 35.295496 94.226632 64.761064 1.811313975 0.016907 211 103 SH387 387 Asn1 16-30 16 30 30.928626 76.973516 53.951071 1.73200007 0.18918 211 104 SH18910 18910 YOL120C_15_94401_93394_INTRON_113_559 intron 26.634817 99.384089 26.634817 73.749272 50.1920445 1.700634886 -0.051887 212 2 SH3803 3803 RNaseP 5' flank 38.890536 91.468552 65.179544 1.814111318 0.159819 212 3 SH13281 13281 MT COX1 Exon 5a 25.667401 102.853101 25.667401 78.1857 51.9265505 1.715389473 -0.179192 212 4 SH1629 1629 Leu5 tRNA 11 23 49.391607 120.361447 84.876527 1.928787601 -0.191542 212 5 SH10026 10026 RUF6 5' 34.897587 91.672304 63.2849455 1.80130041 0.063024 212 6 SH9984 9984 RUF5-1 RUF5-1 726 747 27.295063 77.285122 52.2900925 1.71841941 -0.050342 212 7 SH9190 9190 snR7 U5 RNA 3' 27.995905 70.996513 49.496209 1.694571937 0.080596 212 8 SH3364 3364 Thr4 5' flank 28.235612 88.048283 58.1419475 1.764489575 -0.119342 212 9 SH14269 14269 MT VAR1 includes 5’ processing site VAR1 25.937822 101.508386 25.937822 76.570564 51.254193 1.7097294 -0.138978 212 10 SH8293 8293 snoRNA cluster4 intergenic 39.085881 148.398633 39.085881 110.312752 74.6993165 1.873316628 -0.221505 212 11 SH7777 7777 snoRNA cluster1 intergenic 31.836444 113.557364 31.836444 82.72092 57.278682 1.757993016 0.137856 212 12 SH2793 2793 Pro6 tRNA-intron/exon 56 72 83.851932 192.704968 138.27845 2.140754503 -0.5063 212 13 SH21334 21334 YPR063C spliced 32.224406 113.035651 72.6300285 1.861116215 -0.431558 212 14 SH8956 8956 snR17a / U3a U3a 66 83 27.828989 93.011893 60.420441 1.781183891 -0.223596 212 15 SH11280 11280 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3286 3305 40.480469 97.088478 68.7844735 1.837490417 0.069796 212 16 SH14485 14485 MT 21S rRNA 21S rRNA3 30.146588 145.25713 30.146588 116.110542 73.128565 1.864087051 -0.541953 212 17 SH20870 20870 YLR128W spliced 30.005633 147.11551 88.5605715 1.94724041 -1.032044 212 18 SH11334 11334 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3556 3574 38.033298 80.443927 59.2386125 1.772604878 0.401894 212 19 SH8815 8815 LSR1 / U2 RNA U2 716 733 27.698341 76.547091 52.122716 1.717027038 -0.0131 212 20 SH4847 4847 snR8 snR8 16 32 28.109902 64.241929 46.1759155 1.664415515 0.184356 212 21 SH539 539 Cys1 5' flank - tRNA11 5' flank 11 72.777023 129.924086 101.3505545 2.005826129 0.045826 212 22 SH1506 1506 Leu3 tRNA 1 13 145.169036 225.826819 185.4979275 2.268339062 -0.127074 212 23 SH6444 6444 snR45 snR45 66 78 31.624432 76.33226 53.978346 1.732219573 0.239475 212 24 SH1915 1915 Lys1 tRNA 31 50 87.817849 147.455688 117.6367685 2.070543086 0.017712 212 25 SH12226 12226 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.117255 101.492131 30.117255 72.374876 51.2460655 1.709660527 0.200769 212 26 SH11649 11649 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5131 5149 26.786054 68.348537 47.5672955 1.67730846 0.031994 212 27 SH16139 16139 YDR092W_4_629869_630598_INTRON_31_298 intron 34.699309 130.228955 34.699309 96.529646 65.6144775 1.816999675 -0.046689 212 28 SH8330 8330 snoRNA cluster4 intergenic/snR53 27.985647 96.110637 27.985647 69.12499 48.5553185 1.686236807 0.105525 212 29 SH11338 11338 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3576 3589 38.595833 96.037556 67.3166945 1.828122782 0.053019 212 30 SH12563 12563 MT_15S MT_15S 27.160704 113.838511 27.160704 87.677807 57.4192555 1.759057557 -0.18596 212 31 SH5957 5957 snR36 snR36 241 257 29.360636 84.048172 56.704404 1.75361679 0.003116 212 32 SH10746 10746 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 616 629 36.411175 98.673397 67.542286 1.829575755 -0.05077 212 33 SH8908 8908 LSR1 / U2 RNA 3' 25.546066 67.102307 46.3241865 1.665807801 -0.040774 212 34 SH8267 8267 snoRNA cluster4 snR67 33.641693 122.310286 33.641693 89.668593 61.655143 1.789969309 0.076574 212 35 SH5756 5756 snR35 5' 41.231218 86.724561 63.9778895 1.806029909 0.317756 212 36 SH17816 17816 YKR057W_11_551293_551878_INTRON_25_346 intron 26.05325 110.47869 26.05325 85.42544 55.739345 1.746161861 -0.23834 212 37 SH13573 13573 MT COX1 Exon 6 24.234616 93.78328 24.234616 70.548664 47.39164 1.675701738 -0.190179 212 38 SH3056 3056 Ser3 5' flank 28.790369 79.063834 53.9271015 1.731807078 0.027369 212 39 SH3457 3457 Trp1 3' flank 27.158985 88.560229 57.859607 1.762375479 -0.196106 212 40 SH7178 7178 snR64 5' 29.979738 80.838085 55.4089115 1.743579619 0.081422 212 41 SH11831 11831 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6041 6054 32222.90445 19312.07157 25767.48801 4.411072083 -0.207516 212 42 SH15348 15348 YBL018C_2_186436_185960_INTRON_48_122 intron 29.047643 107.096886 29.047643 79.049243 54.048443 1.732783188 0.044316 212 43 SH21545 21545 copy of SH4254 28.878196 78.405788 53.641992 1.729504897 0.041476 212 44 SH10172 10172 RUF6 RUF6 706 718 41.974218 96.010531 68.9923745 1.838801092 0.122638 212 45 SH10299 10299 RUF7 RUF7 106 127 28.049571 83.348868 55.6992195 1.74584911 -0.07459 212 46 SH12520 12520 MT_ORF6 + ORF7 (hypothetical) ORF6/7 30.611259 117.510277 30.611259 87.899018 59.2551385 1.772726018 -0.008595 212 47 SH10407 10407 RUF8 5' 28.839618 82.215968 55.527793 1.744510412 -0.008552 212 48 SH2594 2594 Pro3 5' flank 127.465546 157.140146 142.302846 2.153213586 0.331979 212 49 SH15578 15578 YBR084C-A_2_415219_414144_INTRON_3_508 intron 26.296502 105.943979 26.296502 80.647477 53.4719895 1.728126343 -0.163203 212 50 SH11925 11925 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6511 6526 32.571157 88.265349 60.418253 1.781168163 0.068033 212 51 SH17095 17095 YHL001W_8_104270_105084_INTRON_130_527 intron 36.609582 131.66115 36.609582 96.051568 66.330575 1.821713762 0.009198 212 52 SH20830 20830 YKR094C spliced 25.245036 81.972913 53.6089745 1.7292375 -0.256535 212 53 SH1577 1577 Leu4 tRNA-intron/exon 56 73 37.783865 85.801739 61.792802 1.790937889 0.265336 212 54 SH2084 2084 Lys4 86-96 + 3' flank 86 102 33.61336 77.707118 55.660239 1.745545067 0.307274 212 55 SH3529 3529 Tyr2 5' flank 25.64155 81.204947 53.4232485 1.727730293 -0.217622 212 56 SH13668 13668 MT ATP6 ATP6 30.609454 105.685711 30.609454 76.076257 53.3428555 1.72707626 0.181375 212 57 SH1685 1685 Leu6 5' flank - tRNA7 7 33.163715 91.536323 62.350019 1.79483659 0.02248 212 58 SH8695 8695 LSR1 / U2 RNA U2 116 135 65.380383 137.371751 101.376067 2.005935438 -0.168458 212 59 SH3085 3085 Ser3 3' flank 29.368064 89.610078 59.489071 1.774437187 -0.09391 212 60 SH9644 9644 RUF4 5' - 8 -4 8 29.354763 81.661929 55.508346 1.744358287 0.031577 212 61 SH14003 14003 MT COB intronic 26.610282 96.64038 26.610282 71.030098 48.82019 1.688599465 -0.017613 212 62 SH21642 21642 copy of SH8352 37.511359 105.949482 71.7304205 1.855703377 -0.173028 212 63 SH12429 12429 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.461572 103.506334 28.461572 76.044762 52.253167 1.718112618 0.044708 212 64 SH7634 7634 snR189 3' 31.131411 76.232892 53.6821515 1.729829913 0.211174 212 65 SH20906 20906 YLR316C spliced 29.223835 77.877334 53.5505845 1.728764215 0.070665 212 66 SH2162 2162 Met2 5' flank 27.100991 85.286597 56.193794 1.749688355 -0.162422 212 67 SH6443 6443 snR45 snR45 61 73 31.89161 83.397107 57.6443585 1.76075681 0.127579 212 68 SH6117 6117 snR39B 5' 27.281436 76.303394 51.792415 1.714266162 -0.038483 212 69 SH8536 8536 snR19 / U1 RNA U1 176 195 27.363156 80.63406 53.998608 1.732382565 -0.088119 212 70 SH12151 12151 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7641 7659 32.081344 97.006039 64.5436915 1.809853801 -0.123736 212 71 SH9262 9262 snR6 / U6 RNA 3' 27.155805 81.433353 54.294579 1.73475647 -0.112327 212 72 SH2641 2641 Pro3 3' flank 28.733721 77.929355 53.331538 1.726984108 0.038128 212 73 SH5951 5951 snR36 snR36 211 228 30.336119 85.86158 58.0988495 1.764167532 0.015601 212 74 SH1811 1811 Leu8 tRNA 81 96 30.385489 87.250735 58.818112 1.76951108 -0.007051 212 75 SH1526 1526 Leu3 101-114 + 3' flank 101 28.413367 84.727721 56.570544 1.752590355 -0.066738 212 76 SH18474 18474 YMR143W_13_551927_552902_INTRON_25_568 intron 28.280799 104.238526 28.280799 76.957727 52.619263 1.721144761 0.020754 212 77 SH4843 4843 snR8 5' - 15 15 30.098585 94.279165 62.188875 1.7937127 -0.139599 212 78 SH6989 6989 snR60 snR60 26 44 29.711322 89.711617 59.7114695 1.776057759 -0.080109 212 79 SH11735 11735 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5561 5576 4907.518793 2651.02896 3779.273877 3.577408366 0.480218 212 80 SH5752 5752 snR35 5' 26.105968 72.998656 49.552312 1.695063923 -0.080693 212 81 SH17928 17928 YLR078C_12_286560_285737_INTRON_4_92 3' exon 37.912402 294.341046 37.912402 257.428644 147.670523 2.169293813 -1.894272 212 82 SH3330 3330 Thr3 5' flank - tRNA12 12 29.517035 157.437978 93.4775065 1.970707119 -1.183661 212 83 SH16588 16588 YFL034C-A_6_64931_64242_INTRON_13_333 intron 27.739141 164.135386 27.739141 137.396245 82.567693 1.91681015 -0.957428 212 84 SH186 186 Arg2 46-62 46 62 34.326946 133.122949 83.7249475 1.922854884 -0.714008 212 85 SH3165 3165 Ser5 5' flank 28.377481 68.356505 48.366993 1.684549088 0.14303 212 86 SH4137 4137 SRP RNA SRP RNA 576 588 30.616119 93.710289 62.163204 1.793533391 -0.107418 212 87 SH4416 4416 telomerase RNA telomerase 1116 1132 28.36598 67.623363 47.9946715 1.681193023 0.152596 212 88 SH12445 12445 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 49.661848 142.164305 49.661848 93.502457 71.5821525 1.854804754 0.31909 212 89 SH7921 7921 snoRNA cluster1 snR72 28.574328 156.328094 28.574328 128.753766 78.664047 1.895776286 -0.799017 212 90 SH18998 18998 YOR122C_15_552886_552297_INTRON_14_222 intron 27.009206 117.854845 27.009206 91.845639 59.4274225 1.773986894 -0.244095 212 91 SH17999 17999 YLR287C-A_12_713158_712537_INTRON_4_433 intron 31.682147 138.144882 31.682147 107.462735 69.572441 1.842437241 -0.342319 212 92 SH3931 3931 RNase MRP RNaseMRP 71 87 31.671257 87.534485 59.602871 1.77526718 0.043396 212 93 SH20308 20308 YER003C spliced 33.695953 84.481815 59.088884 1.771505788 0.181248 212 94 SH13748 13748 MT COB Exon1 27.240459 112.876526 27.240459 86.636067 56.938263 1.755404214 -0.168468 212 95 SH21385 21385 Phe1_5 spliced 99.941933 157.635742 128.7888375 2.109878223 0.044512 212 96 SH9313 9313 RUF1 RUF1 141 158 28.441793 89.754738 59.0982655 1.771574735 -0.139299 212 97 SH15557 15557 YBR082C_2_407127_406586_INTRON_48_142 intron 28.753612 106.878816 28.753612 79.125204 53.939408 1.731906176 0.024185 212 98 SH18074 18074 YLR344W_12_819312_820142_INTRON_20_466 intron 28.467146 122.476498 28.467146 95.009352 61.738249 1.790554308 -0.226121 212 99 SH20752 20752 YJR021C spliced 32.20703 81.395915 56.8014725 1.754359594 0.178325 212 100 SH21119 21119 YNL112W spliced 31.482455 96.317793 63.900124 1.805501701 -0.125384 212 101 SH13130 13130 MT COX1 COX1ai3 31.055903 123.337855 31.055903 93.281952 62.1689275 1.793573375 -0.081242 212 102 SH13129 13129 MT COX1 COX1ai3 26.501323 92.944018 26.501323 67.442695 46.972009 1.671839135 0.024216 212 103 SH17972 17972 YLR185W_12_522665_523290_INTRON_8_366 3' exon 27.332335 112.644942 27.332335 86.312607 56.822471 1.754520116 -0.158379 212 104 SH972 972 Gly1 3' flank 26.235904 82.553072 54.394488 1.735554893 -0.190932 213 2 SH13840 13840 MT COB Cytbi2 25.387594 100.903638 25.387594 76.516044 50.951819 1.707159693 -0.179587 213 3 SH20514 20514 YGR029W spliced 31.768154 80.562497 56.1653255 1.74946828 0.175883 213 4 SH18976 18976 YOR096W_15_505793_506766_INTRON_145_545 intron 27.374132 110.563663 27.374132 84.189531 55.7818315 1.746492769 -0.130565 213 5 SH17091 17091 YHL001W_8_104270_105084_INTRON_130_527 intron 183.680701 355.297683 183.680701 172.616982 178.1488415 2.250783002 0.6081 213 6 SH19640 19640 RNA14 2.2 26.43407 80.294625 53.3643475 1.727251204 -0.148981 213 7 SH21167 21167 YNL302C spliced 31.73163 87.469219 59.6004245 1.775249353 0.047099 213 8 SH18653 18653 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.102932 105.002876 30.102932 75.899944 53.001438 1.724287653 0.152258 213 9 SH4205 4205 telomerase RNA telomerase 61 83 27.869213 66.704578 47.2868955 1.674740802 0.131698 213 10 SH5791 5791 snR35 snR35 141 157 27.601664 92.34481 59.973237 1.77795749 -0.223439 213 11 SH14753 14753 MT ORF11; tRNA Leu; tRNA Gln ORF11 25.124849 109.05464 25.124849 84.929791 55.02732 1.740578362 -0.300881 213 12 SH16337 16337 YDR500C_4_1450856_1450201_INTRON_8_396 5' exon 29.011143 114.806344 29.011143 86.795201 57.903172 1.762702356 -0.060902 213 13 SH5 5 Ala1 5' flank 30.503749 90.170102 60.3369255 1.780583177 -0.052766 213 14 SH321 321 Arg5 5' flank 30.067469 97.496695 63.782082 1.804698692 -0.192897 213 15 SH1713 1713 Leu6 3' flank 29.930484 117.672148 73.801316 1.868064106 -0.575232 213 16 SH7693 7693 snoRNA cluster1 intergenic 33.987399 176.23263 33.987399 143.245231 88.616315 1.947513686 -0.871172 213 17 SH18899 18899 YOL120C_15_94401_93394_INTRON_113_559 intron 25.189463 118.743365 25.189463 94.553902 59.8716825 1.777221463 -0.403517 213 18 SH4413 4413 telomerase RNA telomerase 1101 1118 28.58165 143.456018 86.018834 1.934593551 -1.021832 213 19 SH4170 4170 SRP RNA 3' 45.037016 162.798534 103.917775 2.016689839 -0.862732 213 20 SH20854 20854 YLR061W spliced 31.313767 98.452987 64.883377 1.812133446 -0.1745 213 21 SH5293 5293 snR30 snR30 316 330 56.491447 149.630218 103.0608325 2.013093646 -0.478117 213 22 SH3863 3863 RNaseP RNaseP 281 293 35.481154 97.571348 66.526251 1.82299305 -0.049441 213 23 SH16714 16714 YGL031C_7_438393_437938_INTRON_1_456 intron 29.490082 112.871492 29.490082 84.38141 56.935746 1.755385015 0.004644 213 24 SH10811 10811 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 941 960 146.123201 209.338043 177.730622 2.249762261 0.00849 213 25 SH12686 12686 MT tRNA Trp 3' 26.045333 107.972454 26.045333 82.927121 54.486227 1.736286735 -0.209194 213 26 SH6346 6346 snR43 5' 28.344177 77.612593 52.978385 1.724098715 0.016488 213 27 SH5437 5437 snR31 3' 28.259151 64.477448 46.3682995 1.666221169 0.191042 213 28 SH8066 8066 snoRNA cluster 2 snR61 27.914931 101.50365 27.914931 74.588719 51.251825 1.709709335 0.027524 213 29 SH1322 1322 Ile3 5' flank - tRNA7 7 24.951428 77.385632 51.16853 1.70900294 -0.223804 213 30 SH8072 8072 snoRNA cluster 2 snR61 48.354526 167.767351 48.354526 120.412825 84.3836755 1.926258438 -0.211345 213 31 SH9994 9994 RUF5-1 3' 28.801603 84.655591 56.728597 1.753802043 -0.040314 213 32 SH15462 15462 YBL087C_2_60732_59815_INTRON_43_546 intron 27.48743 101.243985 27.48743 74.756555 51.1219925 1.708607772 -0.004223 213 33 SH21676 21676 copy of SH9839 25.80247 72.877798 49.340134 1.693200325 -0.101623 213 34 SH14462 14462 MT 21S rRNA 21S rRNA3 30.02841 112.083101 30.02841 83.054691 56.5415505 1.752367714 0.053372 213 35 SH1204 1204 Ile1 5' flank 29.355481 94.077247 61.716364 1.790400332 -0.169741 213 36 SH19455 19455 CYC1 26.606354 71.956015 49.2811845 1.692681138 -0.030325 213 37 SH20957 20957 YML024W spliced 34.545376 88.106578 61.325977 1.787644476 0.134916 213 38 SH5907 5907 snR36 5' - 8 -9 8 30.057085 89.434967 59.746026 1.776309024 -0.059845 213 39 SH5419 5419 snR31 snR31 161 177 32.621188 77.811101 55.2161445 1.742066078 0.265104 213 40 SH5959 5959 snR36 snR36 251 265 27.152288 79.09077 53.121529 1.725270567 -0.083346 213 41 SH20023 20023 YBR119W spliced 32.741371 93.163005 62.952188 1.799010829 -0.024245 213 42 SH4999 4999 snR10 snR10 26 42 30.12477 84.964561 57.5446655 1.76000507 0.02249 213 43 SH14424 14424 MT 21S rRNA 21S rRNA3 66.748679 196.2974 66.748679 130.548721 98.6487 1.994091366 -0.052879 213 44 SH4004 4004 SRP RNA 5' 26.376264 78.829305 52.6027845 1.721008734 -0.134666 213 45 SH21321 21321 YPR028W spliced 30.574001 87.11941 58.8467055 1.769722154 0.003557 213 46 SH11450 11450 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4136 4153 33.02863 85.049898 59.039264 1.771140935 0.144108 213 47 SH292 292 Arg4 56-68 56 68 28.930205 81.790459 55.360332 1.743198686 0.002552 213 48 SH16151 16151 YDR092W_4_629869_630598_INTRON_31_298 intron/exon 26.92268 101.300691 26.92268 75.378011 51.1503455 1.708848572 -0.052146 213 49 SH13799 13799 MT COB intronic 26.894892 105.563389 26.894892 79.668497 53.2816945 1.726578028 -0.10858 213 50 SH19696 19696 Negative Control 31.331103 81.127917 56.22951 1.749964299 0.146522 213 51 SH10214 10214 RUF6 RUF6 916 935 26.535043 81.241618 53.8883305 1.731494729 -0.153537 213 52 SH1171 1171 His1 3' flank 26.096767 74.600091 50.348429 1.701985924 -0.102196 213 53 SH8119 8119 snoRNA cluster 3; snR41 27.567727 110.383739 27.567727 83.816012 55.6918695 1.745791797 -0.112834 213 54 SH4087 4087 SRP RNA SRP RNA 326 338 35.010284 93.099377 64.0548305 1.806551886 0.034411 213 55 SH896 896 Glu3 5' flank - tRNA10 10 25.712262 77.245405 51.4788335 1.711628697 -0.164218 213 56 SH19649 19649 SIR1 2.2 28.483627 80.664524 54.5740755 1.736986387 -0.012881 213 57 SH2028 2028 Lys3 86-96 + 3' flank 86 102 29.703884 83.715562 56.709723 1.753657526 0.026568 213 58 SH6249 6249 snR42 snR42 26 42 28.663884 68.469414 48.566649 1.686338139 0.160785 213 59 SH7003 7003 snR60 96-104 + 3' 96 29.054909 88.227576 58.6412425 1.768203164 -0.084206 213 60 SH18569 18569 YNL012W_14_609682_611661_INTRON_106_189 intron 31.677371 122.990222 31.677371 92.312851 61.995111 1.792357442 -0.038568 213 61 SH7239 7239 snR65 5' 29.056608 77.322058 53.189333 1.725824544 0.067016 213 62 SH4668 4668 snR3 3' 30.844593 79.993289 55.418941 1.743658223 0.145526 213 63 SH12372 12372 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.421998 108.837596 28.421998 81.415598 54.918798 1.739721023 -0.026241 213 64 SH6708 6708 snR49 snR49 66 82 28.748109 74.014384 51.3812465 1.710804636 0.090677 213 65 SH15822 15822 YDL064W_4_337486_338069_INTRON_39_148 intron 31.419024 108.333903 31.419024 77.914879 54.6669515 1.737724856 0.206651 213 66 SH7584 7584 snR189 5' - 15 -9 15 29.158532 87.553522 58.356027 1.766085717 -0.067577 213 67 SH191 191 Arg2 71-73 + 3' flank 71 3' flank 27.922372 75.257895 51.5901335 1.712566652 0.019084 213 68 SH14072 14072 MT COB Cytbi4 29.061533 110.914359 29.061533 82.852826 55.9571795 1.747855816 -0.001835 213 69 SH495 495 Asp2 tRNA 36 48 38.559509 90.224367 64.391938 1.808831496 0.180643 213 70 SH19802 19802 Negative Control 29.285134 94.975331 62.1302325 1.793302979 -0.18765 213 71 SH16860 16860 YGL187C_7_150529_149708_INTRON_1_342 intron 26.821318 96.086046 26.821318 70.264728 48.543023 1.686126818 0.007996 213 72 SH20172 20172 YDL137W spliced 32.949604 85.350222 59.149913 1.77195411 0.135449 213 73 SH10488 10488 RUF8 RUF8 366 382 51.671986 87.428685 69.5503355 1.842299229 0.489328 213 74 SH16370 16370 YER003C_5_159117_157735_INTRON_32_124 5' exon 32.079053 116.382636 32.079053 85.303583 58.691318 1.768573862 0.100457 213 75 SH1635 1635 Leu5 tRNA-intron 41 58 27.96661 86.96981 57.46821 1.75942767 -0.122749 213 76 SH14734 14734 MT tRNA cys; tRNA his tRNA his 25.750456 99.455881 25.750456 74.705425 50.2279405 1.700945371 -0.129277 213 77 SH15563 15563 YBR084C-A_2_415219_414144_INTRON_3_508 5' exon 29.992167 107.266701 29.992167 78.274534 54.1333505 1.733464908 0.114468 213 78 SH20355 20355 YER117W spliced 27.424788 80.37026 53.897524 1.731568815 -0.080599 213 79 SH14144 14144 MT COB intronic 29.122739 117.208987 29.122739 89.086248 59.1044935 1.7716205 -0.096068 213 80 SH21352 21352 YPR132W spliced 37.313986 96.290169 66.8020775 1.824789969 0.019811 213 81 SH4902 4902 snR9 5' 25.994869 74.580119 50.287494 1.701459994 -0.109473 213 82 SH15706 15706 YBR220C_2_663261_662457_INTRON_302_722 intron 25.647174 106.589145 25.647174 81.941971 53.7945725 1.730738461 -0.226255 213 83 SH206 206 Arg2 3' flank 43.910184 91.976419 67.9433015 1.832146646 0.248277 213 84 SH9447 9447 RUF2 RUF2 76 88 31.330008 86.93939 59.134699 1.771842391 0.03945 213 85 SH11159 11159 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S/ITS1 2681 2703 25.552437 65.377349 45.464893 1.657676173 -0.013843 213 86 SH9520 9520 RUF3 5' - 4 -14 4 25.784059 99.360255 62.572157 1.796381126 -0.427885 213 87 SH13479 13479 MT COX1 intronic 25.671679 99.046139 25.671679 74.37446 50.0230695 1.699170337 -0.130917 213 88 SH20037 20037 YBR186W spliced 29.726072 107.678778 68.702425 1.836972067 -0.400868 213 89 SH6160 6160 snR39B 3' 28.156308 82.771247 55.4637775 1.744009445 -0.060471 213 90 SH674 674 Gln3 5' flank 26.762035 74.082939 50.422487 1.702624263 -0.047042 213 91 SH5252 5252 snR30 snR30 111 126 27.122504 69.296894 48.209699 1.68313442 0.04281 213 92 SH19763 19763 Negative Control 27.104476 62.014094 44.559285 1.648938214 0.150045 213 93 SH2595 2595 Pro3 5' flank 101.658397 126.24881 113.9536035 2.056728063 0.455897 213 94 SH19963 19963 YBL059W spliced 29.494657 85.379926 57.4372915 1.759193952 -0.013346 213 95 SH17403 17403 YIL069C_9_232366_231550_INTRON_4_412 intron 27.828112 116.179381 27.828112 89.351269 58.5896905 1.767821204 -0.161524 213 96 SH1529 1529 Leu3 3' flank 29.533399 68.051991 48.792695 1.688354806 0.224203 213 97 SH12447 12447 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.234771 115.394375 33.234771 83.159604 58.1971875 1.764901997 0.187206 213 98 SH5607 5607 snR34 5' 30.559015 77.511672 54.0353435 1.732677917 0.159552 213 99 SH7498 7498 snR71 3' 27.600044 74.612099 51.1060715 1.708472498 0.005507 213 100 SH10934 10934 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1556 1573 31.358424 71.915288 51.636856 1.712959792 0.283239 213 101 SH9227 9227 snR6 / U6 RNA U6 6 20 28.712321 82.699489 55.705905 1.745901234 -0.022758 213 102 SH3314 3314 Thr3 5' flank 25.975439 70.394359 48.184899 1.682910953 -0.055487 213 103 SH2854 2854 Pro7 tRNA 76 88 42.444789 97.526566 69.9856775 1.845009171 0.099496 213 104 SH7470 7470 snR71 5' 27.180157 73.611601 50.395879 1.702395025 -0.011062 214 2 SH5197 5197 snR13 3' 30.108921 86.209426 58.1591735 1.764618226 -0.000715 214 3 SH938 938 Gly1 5' flank 29.776118 81.918212 55.847165 1.747001132 0.055292 214 4 SH21707 21707 copy of SH11082 7825.254954 4960.032297 6392.643626 3.805680494 0.095459 214 5 SH9222 9222 snR6 / U6 RNA 5' 26.97234 67.222991 47.0976655 1.672999381 0.061275 214 6 SH18482 18482 YMR194W_13_651144_651909_INTRON_17_479 5' exon 47.912311 159.209203 47.912311 112.296892 80.1046015 1.903657464 -0.080531 214 7 SH15947 15947 YDL125C_4_239605_239018_INTRON_98_208 intron 28.627216 114.932399 28.627216 87.305183 57.9661995 1.763174827 -0.087795 214 8 SH19212 19212 YPL081W_16_404945_406039_INTRON_8_508 intron 27.221528 99.00365 27.221528 72.782122 50.001825 1.698985856 0.002741 214 9 SH19175 19175 YPL079W_16_406631_407534_INTRON_12_432 intron 31.840282 128.483309 31.840282 97.643027 64.7416545 1.811183794 -0.143473 214 10 SH182 182 Arg2 26-40 26 40 38.634407 90.603381 64.618894 1.81035952 0.173789 214 11 SH20534 20534 YGR148C spliced 67.400852 117.902365 92.6516085 1.966852963 0.1482 214 12 SH17383 17383 YIL069C_9_232366_231550_INTRON_4_412 5' exon 30.138205 102.059437 30.138205 72.921232 51.5297185 1.71205777 0.194549 214 13 SH16932 16932 YGR027C_7_534779_534126_INTRON_1_312 5' exon 28.552998 105.623654 28.552998 78.070656 53.311827 1.726823566 0.024427 214 14 SH2268 2268 Phe2 5' flank 32.636007 89.278141 60.957074 1.785024112 0.053045 214 15 SH2090 2090 Lys4 3' flank 25.897174 72.947741 49.4224575 1.693924337 -0.095488 214 16 SH18889 18889 YOL047C_15_242745_241612_INTRON_244_306 3' exon 27.659499 90.272771 27.659499 63.613272 45.6363855 1.65931124 0.162685 214 17 SH18864 18864 YNR053C_14_723108_721117_INTRON_811_1341 intron 82.345918 202.017979 82.345918 120.672061 101.5089895 2.006504504 0.310579 214 18 SH4909 4909 snR9 5' 40.443861 96.012708 68.2282845 1.833964452 0.092034 214 19 SH16486 16486 YER102W_5_362729_363698_INTRON_1_360 intron 25.898086 142.379078 25.898086 117.480992 71.689539 1.855455788 -0.695616 214 20 SH15418 15418 YBL059W_2_110555_111205_INTRON_287_355 intron 26.849956 107.536786 26.849956 81.68683 54.268393 1.734546961 -0.13678 214 21 SH1341 1341 Ile3 tRNA-intron/exon 86 102 30.282972 88.876349 59.5796605 1.775098024 -0.040132 214 22 SH17550 17550 YJL189W_10_75932_76473_INTRON_7_392 5' exon 26.716972 101.165418 26.716972 75.448446 51.082709 1.708273921 -0.067814 214 23 SH20883 20883 YLR211C spliced 27.418795 93.498402 60.4585985 1.781458076 -0.251541 214 24 SH19785 19785 Negative Control 32.780528 106.462614 69.621571 1.842743819 -0.294201 214 25 SH13131 13131 MT COX1 COX1ai3 28.182069 130.769128 28.182069 103.587059 65.884564 1.818783676 -0.373307 214 26 SH5658 5658 snR34 snR34 211 227 37.792907 127.478255 82.635581 1.917167085 -0.543683 214 27 SH3398 3398 Thr4 3' flank 28.185917 112.616338 70.4011275 1.847579615 -0.537384 214 28 SH21614 21614 copy of SH7315 30.184273 127.734233 78.959253 1.897403031 -0.737522 214 29 SH19363 19363 YPR028W_16_623522_624197_INTRON_52_184 intron 29.146818 155.18779 29.146818 127.040972 78.093895 1.892617084 -0.755073 214 30 SH1917 1917 Lys1 tRNA 41 57 4701.44547 6974.113312 5837.779391 3.766247679 -1.10751 214 31 SH741 741 Gln4 5' flank 32.920161 212.945734 122.9329475 2.089668295 -1.681533 214 32 SH8148 8148 snoRNA cluster 3; intergenic 29.559253 206.830336 29.559253 178.271083 103.915168 2.016678944 -1.432632 214 33 SH17556 17556 YJL189W_10_75932_76473_INTRON_7_392 intron 32.866317 120.211213 32.866317 88.344896 60.6056065 1.782512802 0.078713 214 34 SH13472 13472 MT COX1 intronic 26.036255 100.319254 26.036255 75.282999 50.659627 1.704661988 -0.115411 214 35 SH665 665 Gln2 3' flank 27.899121 87.067164 57.4831425 1.759540502 -0.128422 214 36 SH18319 18319 YML085C_13_99400_97941_INTRON_26_141 intron 26.882865 100.151855 26.882865 74.26899 50.5759275 1.703943856 -0.040774 214 37 SH19850 19850 Negative Control 32.021384 82.175865 57.0986245 1.756625646 0.155835 214 38 SH12762 12762 MT COX1 COX1ai1 37.420054 130.498214 37.420054 94.07816 65.749107 1.817889859 0.070069 214 39 SH5561 5561 snR33 snR33 91 107 37.926864 101.278932 69.602898 1.842627322 -0.070973 214 40 SH8068 8068 snoRNA cluster 2 snR61 28.536097 109.802885 28.536097 82.266788 55.4014425 1.743521073 -0.029106 214 41 SH3833 3833 RNaseP RNaseP 131 146 30.139673 76.672541 53.406107 1.727590922 0.144416 214 42 SH17042 17042 YGR183C_7_859471_859058_INTRON_4_216 intron 29.016193 109.664272 29.016193 81.648079 55.332136 1.742977436 0.009889 214 43 SH4822 4822 snR5 3' 27.076874 77.424275 52.2505745 1.71809107 -0.067265 214 44 SH7636 7636 snR189 3' 26.746465 72.393029 49.569747 1.695216702 -0.02602 214 45 SH20750 20750 YJR021C spliced 33.357499 88.022822 60.6901605 1.783118286 0.104218 214 46 SH6357 6357 snR43 snR43 26 42 30.83352 87.434983 59.1342515 1.771839104 0.009276 214 47 SH16504 16504 YER117W_5_396765_397649_INTRON_43_513 intron 26.431233 106.676612 26.431233 81.245379 53.838306 1.731091387 -0.160969 214 48 SH82 82 Ala2 46-61 46 61 39.085621 86.422371 62.753996 1.797641386 0.279652 214 49 SH15224 15224 MT COX3 cox3 27.014088 107.462708 27.014088 81.44862 54.231354 1.734250448 -0.122373 214 50 SH18651 18651 YNL112W_14_413636_416278_INTRON_1274_2275 intron 32.050982 116.300145 32.050982 85.249163 58.6500725 1.768268553 0.100272 214 51 SH13725 13725 MT COB 5' 27.187947 108.46736 27.187947 82.279413 54.73368 1.738254649 -0.120446 214 52 SH8147 8147 snoRNA cluster 3; intergenic 29.060536 99.160503 29.060536 71.099967 50.0802515 1.699666501 0.151076 214 53 SH5461 5461 snR32 5' 25.589231 71.63007 48.6096505 1.686722499 -0.101033 214 54 SH7871 7871 snoRNA cluster1 snR73 44.630248 158.095092 44.630248 114.464844 79.547546 1.900626786 -0.182003 214 55 SH3766 3766 Val4 tRNA 56 70 27.683655 86.353131 57.018393 1.756014973 -0.134785 214 56 SH21885 21885 copy of SH18600 28.303503 79.882002 54.0927525 1.733139081 -0.015074 214 57 SH10609 10609 RUF8 3' 30.643278 73.67734 52.160309 1.717340156 0.215536 214 58 SH1511 1511 Leu3 tRNA-exon/intron 26 40 35.36527 92.906022 64.135646 1.807099473 0.047256 214 59 SH21806 21806 copy of SH15281 30.956451 90.363938 60.6601945 1.782903798 -0.03637 214 60 SH11522 11522 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4496 4514 72.042064 120.766773 96.4044185 1.984096939 0.17022 214 61 SH13943 13943 MT COB Cytbi3 26.648481 110.308249 26.648481 84.659768 55.6541245 1.745497355 -0.186762 214 62 SH7381 7381 snR68 126-136 + 3' 126 28.517587 74.814898 51.6662425 1.713206878 0.064737 214 63 SH4144 4144 SRP RNA SRP RNA 611 623 38.963041 99.144087 69.053564 1.839186098 -0.004854 214 64 SH21127 21127 YNL130C spliced 28.523269 81.906659 55.214964 1.742056793 -0.025561 214 65 SH8342 8342 snoRNA cluster4 snR53 27.640414 111.203113 27.640414 84.562699 56.1015565 1.748974911 -0.116753 214 66 SH3027 3027 Ser2 3' flank 31.078815 90.618554 60.8486845 1.784251194 -0.035443 214 67 SH11769 11769 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5731 5748 38.089068 89.821812 63.95544 1.805877491 0.179231 214 68 SH5190 5190 snR13 106-124 + 3' 106 28.505195 77.077102 52.7911485 1.72256111 0.034093 214 69 SH20926 20926 YLR367W spliced 28.70965 74.523484 51.616567 1.712789116 0.081292 214 70 SH4371 4371 telomerase RNA telomerase 891 907 31.339059 92.010272 61.6746655 1.790106803 -0.04786 214 71 SH20213 20213 YDR064W spliced 28.751434 82.55207 55.651752 1.745478841 -0.018407 214 72 SH21028 21028 YMR116C spliced 27.753927 85.826139 56.790033 1.754272121 -0.123879 214 73 SH14082 14082 MT COB Cytbi4 40.93989 481.328363 40.93989 441.388473 241.1641815 2.382312805 -2.768597 214 74 SH20028 20028 YBR181C spliced 55.919714 391.863814 223.891764 2.350038118 -2.198204 214 75 SH11709 11709 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5431 5446 52.875198 213.352671 133.1139345 2.12422352 -1.198299 214 76 SH19578 19578 AEP2/ATP13 0.6 36.546335 183.268232 109.9072835 2.041026474 -1.291735 214 77 SH2008 2008 Lys3 5' flank - tRNA2 2 33.956311 151.978495 92.967403 1.968330699 -0.990877 214 78 SH5236 5236 snR30 snR30 31 45 689.195342 709.249277 699.2223095 2.844615277 -0.014524 214 79 SH2232 2232 Phe1 tRNA-exon/intron 36 54 31.318869 175.676745 103.497807 2.014931148 -1.351782 214 80 SH1892 1892 Lys1 5' flank 75.568686 165.73587 120.652278 2.081535526 -0.356288 214 81 SH13256 13256 MT COX1 COX1-ai4 24.234069 93.327834 24.234069 70.093765 47.163917 1.673609866 -0.183647 214 82 SH17901 17901 YLR061W_12_263195_263949_INTRON_13_401 intron 30.158777 267.758275 30.158777 238.599498 134.3791375 2.128331849 -1.98434 214 83 SH739 739 Gln4 5' flank 29.117036 190.145142 109.631089 2.039933728 -1.57456 214 84 SH20343 20343 YER093C-A spliced 28.591139 140.494224 84.5426815 1.927076019 -0.978528 214 85 SH21820 21820 copy of SH16000 39.278194 121.338826 80.30851 1.904761568 -0.410529 214 86 SH20630 20630 YHR123W spliced 33.169114 142.825232 87.997173 1.94446872 -0.886104 214 87 SH8316 8316 snoRNA cluster4 intergenic 33.248369 290.2744 33.248369 258.026031 145.6372 2.163272321 -2.034961 214 88 SH9579 9579 RUF3 RUF3 281 296 33.408564 207.420577 120.4145705 2.080679041 -1.61665 214 89 SH11734 11734 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5556 5571 31096.26596 11336.07265 21216.16931 4.326666972 0.587298 214 90 SH219 219 Arg3 5' flank 35.149549 136.240773 85.695161 1.932956299 -0.740667 214 91 SH10964 10964 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1706 1724 31.057648 146.369773 88.7137105 1.947990744 -0.992201 214 92 SH6225 6225 snR42 5' 32.26391 112.916311 72.5901105 1.860877458 -0.428371 214 93 SH10897 10897 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1371 1386 31.11848 93.175587 62.1470335 1.793420403 -0.076783 214 94 SH12895 12895 MT COX1 intronic 31.396579 107.448239 31.396579 77.05166 54.2241195 1.734192509 0.216459 214 95 SH10810 10810 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 936 953 34.398537 90.260795 62.329666 1.7946948 0.082222 214 96 SH16140 16140 YDR092W_4_629869_630598_INTRON_31_298 intron 30.43838 117.58376 30.43838 88.14538 59.29188 1.772995221 -0.020505 214 97 SH14922 14922 MT tRNA Tyr 3' 26.066279 93.26871 26.066279 68.202431 47.134355 1.673337568 -0.018409 214 98 SH11619 11619 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4981 4994 14063.38142 7824.804935 10944.09318 4.039179782 0.137845 214 99 SH19220 19220 YPL081W_16_404945_406039_INTRON_8_508 3' exon 29.698946 120.677661 29.698946 91.978715 60.8388305 1.784180857 -0.119274 214 100 SH20822 20822 YKR057W spliced 33.577862 95.306469 64.4421655 1.809170126 -0.048873 214 101 SH5211 5211 snR30 5' 28.356606 83.516833 55.9367195 1.747696993 -0.056094 214 102 SH11947 11947 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6621 6636 212.215558 257.273073 234.7443155 2.370595084 0.119607 214 103 SH11963 11963 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6701 6714 36.956664 100.794357 68.8755105 1.838064831 -0.082401 214 104 SH9030 9030 snR17a / U3a U3a 436 453 32.213353 86.425996 59.3196745 1.773198759 0.085826