Column Row SH # numerical values ncRNA oligo covers start of coverage end of coverage Cy5 Cy3 average log I Ratio 2 2 SH4517 4517 U3b (snR17b) U3b 141 158 36.843817 177.481711 107.162764 2.030043907 0.159944 2 3 SH16978 16978 YGR034W_7_555923_556666_INTRON_20_496 intron 32.643163 199.06812 32.643163 167.424957 100.03406 2.000147896 0.080289 2 4 SH3333 3333 Thr3 tRNA 11 25 55.852331 223.781346 139.8168385 2.145559478 -0.069648 2 5 SH8340 8340 snoRNA cluster4 snR53 43.140666 228.575926 43.140666 186.43526 114.787963 2.059896349 0.162221 2 6 SH21200 21200 YOL127W spliced 30.581542 177.872816 104.227179 2.017980983 -0.10317 2 7 SH1798 1798 Leu8 tRNA 16 31 66.295897 203.423566 134.8597315 2.129882291 0.264473 2 8 SH18206 18206 YML024W_13_225889_226697_INTRON_4_401 intron 27.508539 153.144801 27.508539 126.636262 77.0724005 1.886898886 -0.032963 2 9 SH4186 4186 telomerase RNA 5' 26.530069 131.837568 79.1838185 1.898636441 -0.140809 2 10 SH10076 10076 RUF6 RUF6 226 242 30.812863 184.57489 107.6938765 2.03219101 -0.126661 2 11 SH19634 19634 RNA14 2.2 28.880145 147.915867 88.398006 1.946442469 -0.055631 2 12 SH18535 18535 YMR230W_13_732413_733140_INTRON_53_462 intron 30.151643 215.332245 30.151643 186.180602 108.1661225 2.034091262 -0.176014 2 13 SH15542 15542 YBR078W_2_393082_394818_INTRON_59_388 intron 36.84335 252.480137 36.84335 216.636787 126.7400685 2.102913938 -0.275579 2 14 SH10388 10388 RUF7 3' 33.95266 191.528995 112.7408275 2.052081218 -0.066488 2 15 SH7133 7133 snR63 snR63 171 188 29.924915 131.199129 80.562022 1.906130358 0.112673 2 16 SH11320 11320 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3486 3503 33460.35295 33526.38738 33493.37016 4.524958849 -0.481891 2 17 SH7668 7668 snoRNA cluster1 snR78 32.686483 187.601558 32.686483 155.915075 94.300779 1.97451528 0.155132 2 18 SH14460 14460 MT 21S rRNA 21S rRNA3 366.78409 988.174303 366.78409 622.390213 494.5871515 2.69424283 0.038064 2 19 SH7249 7249 snR65 snR65 21 40 35.40459 184.278634 109.841612 2.040766898 0.048794 2 20 SH5392 5392 snR31 snR31 26 42 35.609258 161.688279 98.6487685 1.994091668 0.276382 2 21 SH9592 9592 RUF3 RUF3 346 360 47.211959 171.734386 109.4731725 2.039307704 0.404042 2 22 SH863 863 Glu2 3' flank 29.10786 139.98444 84.54615 1.927093836 0.003859 2 23 SH18333 18333 YML094W_13_82275_82849_INTRON_17_99 3' exon 29.23405 219.779594 29.23405 191.545544 110.389797 2.042928935 -0.262651 2 24 SH13596 13596 MT ATP8/AAP1 5' / ATP8 31.651146 200.45486 31.651146 169.803714 100.72743 2.003147753 0.008264 2 25 SH17637 17637 YJR094W-A_10_608000_608553_INTRON_3_277 3' exon 59.654557 300.750566 59.654557 242.096009 150.875283 2.178618098 -0.18187 2 26 SH16884 16884 YGL189C_7_148970_148233_INTRON_1_368 intron 31.87316 194.05899 31.87316 163.18583 97.529495 1.989135975 0.061721 2 27 SH1355 1355 Ile3 3' flank 31.965523 167.600098 99.7828105 1.999055732 0.040012 2 28 SH12096 12096 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7366 7388 29.714658 134.561477 82.1380675 1.914544481 0.078103 2 29 SH21077 21077 YMR230W spliced 39.120538 185.459441 112.2899895 2.050341041 0.110845 2 30 SH107 107 Arg1 5' flank 29.817414 155.236113 92.5267635 1.966267371 -0.02793 2 31 SH9250 9250 snR6 / U6 RNA 3' 32.195548 197.345496 114.770522 2.059830357 -0.180628 2 32 SH1368 1368 Leu1 5' flank 43.994373 218.958 131.4761865 2.118847099 -0.1899 2 33 SH18746 18746 YNL162W_14_331319_332151_INTRON_5_516 intron 33.464944 220.602132 33.464944 188.137188 110.801066 2.044543939 -0.05367 2 34 SH19969 19969 YBL072C spliced 46.530322 210.239035 128.3846785 2.108513198 -0.062862 2 35 SH11097 11097 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2371 2386 49.036897 192.750833 120.893865 2.082404262 0.165878 2 36 SH21114 21114 YNL096C spliced 32.55539 167.182008 99.868699 1.999429392 0.076731 2 37 SH9847 9847 RUF5-1 RUF5-1 41 60 32.672118 196.715674 114.693896 2.059540305 -0.157632 2 38 SH13509 13509 MT COX1 intronic 30.403878 180.940157 30.403878 151.536279 90.9700785 1.958898569 0.032033 2 39 SH21639 21639 copy of SH8349 30.498863 168.945036 99.7219495 1.99879076 -0.055911 2 40 SH9821 9821 RUF5-1 5' 30.571713 157.15602 93.8638665 1.97249844 0.013959 2 41 SH10219 10219 RUF6 RUF6 941 958 30.615158 128.883022 79.74909 1.901725736 0.17458 2 42 SH606 606 Gln1 71-72 + 3' flank 71 3' flank 36.635365 150.394657 93.515011 1.970881329 0.404966 2 43 SH17399 17399 YIL069C_9_232366_231550_INTRON_4_412 intron 32.999479 220.128441 32.999479 188.128962 110.5642205 2.043614608 -0.070375 2 44 SH5618 5618 snR34 snR34 11 27 32.934442 144.315591 88.6250165 1.947556329 0.237501 2 45 SH7623 7623 snR189 186-189 + 3' 186 32.833347 146.187976 89.5106615 1.951874767 0.220678 2 46 SH11953 11953 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6651 6666 1310.909396 1086.831267 1198.870332 3.078772213 0.737112 2 47 SH15172 15172 MT COX3 5' 32.538093 185.60708 32.538093 154.068987 93.30354 1.969898121 0.158728 2 48 SH946 946 Gly1 5' flank 30.002444 141.323716 85.66308 1.932793685 0.060191 2 49 SH21355 21355 YPR187W spliced 894.322288 1177.375797 1035.849043 3.015296469 0.117262 2 50 SH20129 20129 YDL082W spliced 31.962314 161.008141 96.4852275 1.984460825 0.080592 2 51 SH7739 7739 snoRNA cluster1 intergenic 31.762788 169.332418 31.762788 138.56963 85.166209 1.930267316 0.19524 2 52 SH20318 20318 YER044C-A spliced 31.564971 139.928288 85.7466295 1.933217058 0.174371 2 53 SH13740 13740 MT COB Exon1 29.086908 156.490398 29.086908 128.40349 78.745199 1.896224085 0.070295 2 54 SH5523 5523 snR33 5' 28.901243 195.201544 112.0513935 2.049417262 -0.303264 2 55 SH14167 14167 MT COB intronic 33.212406 220.010495 33.212406 187.798089 110.5052475 2.043382902 -0.0597 2 56 SH17335 17335 YIL018W_9_316766_317930_INTRON_5_404 intron 28.507848 164.19441 28.507848 136.686562 82.597205 1.916965352 -0.021429 2 57 SH2428 2428 Phe5 5' flank 30.513752 129.39398 79.953866 1.902839468 0.164509 2 58 SH13198 13198 MT COX1 Exon4 28.075672 166.45931 28.075672 139.383638 83.729655 1.922879302 -0.068829 2 59 SH13106 13106 MT COX1 COX1ai3 27.847974 169.853507 27.847974 143.005533 85.4267535 1.931593902 -0.105971 2 60 SH4046 4046 SRP RNA SRP RNA 121 140 29.781301 154.120437 91.950869 1.963555838 -0.024602 2 61 SH8251 8251 snoRNA cluster4 5' 31.68508 196.656108 31.68508 165.971028 98.828054 1.994880244 0.033463 2 62 SH20442 20442 YGL087C spliced 29.303805 205.349547 117.326676 2.069396767 -0.360456 2 63 SH7991 7991 snoRNA cluster 2 intergenic 28.039234 162.845783 28.039234 135.806549 81.9228915 1.913405272 -0.051303 2 64 SH12123 12123 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7501 7520 28.930486 162.166408 95.548447 1.980223633 -0.125979 2 65 SH14399 14399 MT 21S rRNA 21S rRNA3 28.820019 179.699338 28.820019 151.879319 90.349669 1.955926566 -0.080827 2 66 SH19159 19159 YPL075W_16_412249_415357_INTRON_9_759 intron 30.87179 192.258381 30.87179 162.386591 96.6291905 1.985108341 0.007036 2 67 SH9482 9482 RUF2 RUF2 251 265 83.903454 274.641761 179.2726075 2.253513935 -0.133877 2 68 SH12084 12084 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7306 7324 39.444217 194.625732 117.0349745 2.068315665 0.010208 2 69 SH337 337 Arg5 tRNA 21 35 29.046653 162.209505 95.628079 1.980585432 -0.117877 2 70 SH6760 6760 snR50 5' 73.19377 239.836229 156.5149995 2.194555964 0.010166 2 71 SH19973 19973 YBL087C spliced 29.381999 135.217559 82.299779 1.915398669 0.050602 2 72 SH15102 15102 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 27.373374 154.758417 27.373374 128.385043 77.8792085 1.891421529 -0.05446 2 73 SH17209 17209 YHR039C-A_8_187670_187164_INTRON_4_165 intron 29.608201 161.949831 29.608201 133.34163 81.4749155 1.911023919 0.077641 2 74 SH6383 6383 snR43 snR43 156 175 27.487049 140.475338 83.9811935 1.924182042 -0.119533 2 75 SH7696 7696 snoRNA cluster1 intergenic 36.095593 201.651403 36.095593 166.55581 101.3257015 2.005719619 0.242582 2 76 SH8048 8048 snoRNA cluster 2 intergenic 31.707182 200.41209 31.707182 169.704908 100.706045 2.00305554 0.012162 2 77 SH29 29 Ala1 tRNA 41 53 892.22222 1109.257541 1000.739881 3.000321207 0.210007 2 78 SH1056 1056 Gly3 tRNA 16 33 31.488882 165.820338 98.65461 1.994117384 0.022774 2 79 SH18475 18475 YMR143W_13_551927_552902_INTRON_25_568 intron 31.368097 213.367908 31.368097 182.999811 107.183954 2.030129774 -0.084568 2 80 SH20519 20519 YGR034W spliced 33.375861 199.772078 116.5739695 2.066601585 -0.163421 2 81 SH15188 15188 MT COX3 cox3 29.036682 207.342546 29.036682 179.305864 104.171273 2.017747971 -0.208225 2 82 SH12572 12572 MT_15S MT_15S 28.956982 175.739127 28.956982 147.782145 88.3695635 1.94630271 -0.04933 2 83 SH18987 18987 YOR096W_15_505793_506766_INTRON_145_545 intron 26.797515 144.562446 26.797515 118.764931 72.781223 1.862019349 -0.033418 2 84 SH18375 18375 YMR116C_13_500687_499455_INTRON_538_810 5' exon 30.968779 178.375684 30.968779 148.406905 89.687842 1.952733574 0.087142 2 85 SH15482 15482 YBL092W_2_45639_46364_INTRON_1_333 5' exon 292.55264 766.208643 292.55264 474.656003 383.6043215 2.583883491 0.217961 2 86 SH2958 2958 Ser1 tRNA 21 38 76.721956 252.495138 164.608547 2.216452381 -0.050953 2 87 SH11 11 Ala1 5' flank 28.951801 181.59932 105.2755605 2.022327562 -0.226611 2 88 SH12806 12806 MT COX1 COX1ai1 31.143194 223.667264 31.143194 193.52407 112.333632 2.050509801 -0.187442 2 89 SH16105 16105 YDR064W_4_579453_580447_INTRON_22_560 5' exon 48.28865 258.412442 48.28865 211.123792 129.706221 2.112960806 -0.047731 2 90 SH10993 10993 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1851 1871 9640.127015 3688.999521 6664.563268 3.823771695 1.41577 2 91 SH16027 16027 YDL191W_4_117665_118518_INTRON_4_494 5' exon 33.525554 206.921884 33.525554 174.39633 103.960942 2.016870206 0.076476 2 92 SH9621 9621 RUF3 3' 31.44029 164.192014 97.816152 1.990410574 0.029913 2 93 SH1929 1929 Lys1 3' flank 35.74748 154.919037 95.3332585 1.979244438 0.328987 2 94 SH11340 11340 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3586 3603 24954.46574 13023.88077 18989.17325 4.278506057 0.639856 2 95 SH6282 6282 snR42 snR42 191 209 37.89032 239.97105 138.930685 2.142798177 -0.490998 2 96 SH239 239 Arg3 51-63 51 63 1506.165649 1335.224285 1420.694967 3.152500842 0.590503 2 97 SH4589 4589 U3b (snR17b) 3' 31.434404 170.823063 101.1287335 2.004874568 -0.010662 2 98 SH11949 11949 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6631 6644 35.704156 151.007185 93.3556705 1.970140702 0.352705 2 99 SH11609 11609 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4931 4947 75.742787 242.243917 158.993352 2.201378966 0.020529 2 100 SH15539 15539 YBR078W_2_393082_394818_INTRON_59_388 intron 29.284427 160.489818 29.284427 132.205391 80.744909 1.907115149 0.061152 2 101 SH5604 5604 snR34 5' 31.440788 164.832833 98.1368105 1.991831939 0.025985 2 102 SH3775 3775 Val4 3' flank 31.464052 174.163022 102.813537 2.0120503 -0.028573 2 103 SH11029 11029 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2031 2046 51978.65937 44580.46972 48279.56454 4.683763344 -0.361901 2 104 SH11555 11555 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4661 4674 998.472296 614.791738 806.632017 2.906675456 1.306555 3 2 SH11895 11895 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6361 6379 199.989781 384.991186 292.4904835 2.46611174 0.138211 3 3 SH20327 20327 YER074W spliced 38.089893 184.7509 111.4203965 2.0469647 0.100293 3 4 SH21612 21612 copy of SH7093 38.084192 184.269535 111.1768635 2.046014418 0.105869 3 5 SH11535 11535 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4561 4579 3917.526537 3375.043245 3646.284891 3.561850598 0.388466 3 6 SH7690 7690 snoRNA cluster1 intergenic 30.73203 169.690102 30.73203 139.958072 85.345051 1.931178342 0.118361 3 7 SH10526 10526 RUF8 RUF8 556 570 30.728323 158.708467 94.718395 1.97643433 0.0166 3 8 SH17961 17961 YLR185W_12_522665_523290_INTRON_8_366 intron 45.38176 254.530383 45.38176 210.148623 127.7651915 2.10641255 -0.077777 3 9 SH1752 1752 Leu7 tRNA 56 68 30.786868 178.934514 104.860691 2.020612715 -0.096707 3 10 SH2534 2534 Pro2 5' flank 35.069748 166.380612 100.72518 2.003138052 0.209819 3 11 SH9351 9351 RUF1 RUF1 331 348 43.684627 151.509057 97.596842 1.989435765 0.629267 3 12 SH8558 8558 snR19 / U1 RNA U1 286 305 29.126569 130.732823 79.929696 1.902708161 0.058498 3 13 SH11789 11789 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5831 5846 31473.35522 32771.32665 32122.34093 4.506807187 -0.525198 3 14 SH21621 21621 copy of SH7516 33.962463 185.858946 109.9107045 2.041039992 -0.015432 3 15 SH7103 7103 snR63 snR63 21 38 29.945906 139.629983 84.7879445 1.928334107 0.065615 3 16 SH19216 19216 YPL081W_16_404945_406039_INTRON_8_508 intron 32.430469 198.856059 32.430469 167.42559 99.9280295 1.999687324 0.068065 3 17 SH5206 5206 snR13 3' 29.39727 160.262813 94.8300415 1.976945941 -0.083196 3 18 SH6469 6469 snR45 3' 39.690972 165.336969 102.5139705 2.010783055 0.368724 3 19 SH10358 10358 RUF7 RUF7 401 420 51.269068 231.150377 141.2097225 2.1498646 -0.20352 3 20 SH21573 21573 copy of SH5388 33.415539 170.026398 101.7209685 2.007410487 0.108341 3 21 SH21197 21197 YOL121C spliced 31.326141 164.299983 97.813062 1.990396855 0.022446 3 22 SH19638 19638 RNA14 2.2 31.483012 169.279207 100.3811095 2.001651992 0.001451 3 23 SH12033 12033 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7051 7074 29.334572 127.595524 78.465048 1.894676245 0.092963 3 24 SH2339 2339 Phe3 tRNA 21 33 36.371035 186.655825 111.51343 2.047327174 0.045283 3 25 SH7977 7977 snoRNA cluster 2 snR57 36.507677 195.160293 36.507677 159.652616 98.0801465 1.991581106 0.327611 3 26 SH16400 16400 YER056C-A_5_270183_269421_INTRON_38_434 intron 34.304358 230.633338 34.304358 197.32898 115.816669 2.06377107 -0.11721 3 27 SH6343 6343 snR43 5' 32.071098 147.814536 89.942817 1.953966486 0.162967 3 28 SH10474 10474 RUF8 RUF8 296 315 29.810154 156.861326 93.33574 1.970047975 -0.036872 3 29 SH1961 1961 Lys2 tRNA 6 18 43.891364 209.275286 126.583325 2.102376499 -0.089628 3 30 SH12707 12707 MT ORF 8 (hypothetical) ORF8 29.888834 204.12988 29.888834 175.241046 102.56494 2.01099893 -0.130855 3 31 SH10555 10555 RUF8 RUF8 701 718 32.25101 131.934956 82.092983 1.914306037 0.265972 3 32 SH4763 4763 snR5 5' - 3 3 32.277559 190.43745 111.3575045 2.04671949 -0.117453 3 33 SH12401 12401 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.356302 194.613119 39.356302 156.256817 97.8065595 1.990367982 0.453895 3 34 SH6709 6709 snR49 snR49 71 88 30.018763 133.39229 81.7055265 1.912251433 0.106348 3 35 SH13203 13203 MT COX1 Exon4 30.084122 161.859354 30.084122 132.775232 81.429677 1.910782712 0.114542 3 36 SH20610 20610 YHR079C-A spliced 34.883684 205.487808 120.185746 2.079852964 -0.193598 3 37 SH6306 6306 snR42 snR42 311 325 39.729825 188.276991 114.003408 2.056917834 0.088941 3 38 SH5560 5560 snR33 snR33 86 100 278.15939 529.895295 404.0273425 2.606410757 -0.028082 3 39 SH10113 10113 RUF6 RUF6 411 432 32.794438 197.384216 115.089327 2.06103505 -0.158881 3 40 SH21218 21218 YOR122C spliced 35.240645 186.361667 110.801156 2.044544291 0.024266 3 41 SH1794 1794 Leu8 5' flank - tRNA11 11 922.305416 1728.534511 1325.419964 3.122353508 -0.456292 3 42 SH1430 1430 Leu2 5' flank 30.504129 172.107642 101.3058855 2.005634677 -0.074432 3 43 SH19239 19239 YPL090C_16_378390_377286_INTRON_7_400 intron 30.475315 173.040237 30.475315 143.564922 87.0201185 1.93961967 0.080678 3 44 SH3170 3170 Ser5 5' flank 30.416121 141.34589 85.8810055 1.933897121 0.08891 3 45 SH18122 18122 YLR388W_12_898158_898821_INTRON_1_488 intron 32.699261 207.771803 32.699261 176.072542 104.3859015 2.018641846 0.03044 3 46 SH19219 19219 YPL081W_16_404945_406039_INTRON_8_508 intron/exon 37.307588 224.924076 37.307588 188.616488 112.962038 2.052932519 0.040512 3 47 SH5398 5398 snR31 snR31 56 70 37.133533 149.753203 93.443368 1.970548483 0.434557 3 48 SH9670 9670 RUF4 RUF4 126 147 29.90852 134.742993 82.3257565 1.91553573 0.090748 3 49 SH21403 21403 Pro8 spliced 2738.435983 3222.00462 2980.220302 3.474248369 -0.005871 3 50 SH6673 6673 snR48 3' 31.862182 203.852566 117.857374 2.07135676 -0.24784 3 51 SH17401 17401 YIL069C_9_232366_231550_INTRON_4_412 intron 33.95942 188.048851 33.95942 155.089431 94.5244255 1.975544046 0.231946 3 52 SH14137 14137 MT COB intronic 29.174243 183.094993 29.174243 154.92075 92.0474965 1.964011981 -0.071538 3 53 SH12787 12787 MT COX1 COX1ai1 33.516356 213.322764 33.516356 180.806408 107.161382 2.030038306 0.015236 3 54 SH19860 19860 Negative Control 33.287299 171.976831 102.632065 2.011283067 0.089564 3 55 SH11408 11408 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3926 3941 33.050331 156.005171 94.527751 1.975559325 0.175239 3 56 SH711 711 Gln3 3' flank 28.367559 124.312212 76.3398855 1.882751504 0.045628 3 57 SH19266 19266 YPL143W_16_282121_282969_INTRON_20_544 intron 30.348331 196.991893 30.348331 167.643562 98.9959465 1.995617412 -0.057303 3 58 SH14944 14944 MT tRNA Met 5' 27.924576 159.604651 27.924576 132.680075 80.3023255 1.904728122 -0.04073 3 59 SH1453 1453 Leu2 tRNA-exon/intron 36 53 34.200525 221.936697 128.068611 2.107442699 -0.375485 3 60 SH3838 3838 RNaseP RNaseP 156 173 39.315749 210.929267 125.122508 2.097335441 -0.175585 3 61 SH20819 20819 YKL190W spliced 29.397584 159.000847 94.1992155 1.974047286 -0.07677 3 62 SH4719 4719 snR4 snR4 131 145 31.307022 131.801077 81.5540495 1.91144553 0.204198 3 63 SH18978 18978 YOR096W_15_505793_506766_INTRON_145_545 intron 29.010624 204.881644 29.010624 176.87102 102.940822 2.012587632 -0.196012 3 64 SH13506 13506 MT COX1 intronic 67.914606 311.156358 67.914606 244.241752 156.078179 2.193342189 -0.090979 3 65 SH6344 6344 snR43 5' 28.796348 138.768281 83.7823145 1.923152354 -0.012002 3 66 SH11903 11903 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6401 6414 164.845621 309.405563 237.125592 2.374978428 0.318855 3 67 SH21429 21429 Tyr1_2 spliced 30.922382 156.944877 93.9336295 1.972821103 0.038717 3 68 SH16217 16217 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 28.934617 178.651154 28.934617 150.716537 89.825577 1.953400016 -0.066366 3 69 SH12757 12757 MT COX1 COX1ai1 91.583189 352.379306 91.583189 261.796117 176.689653 2.247211118 0.042105 3 70 SH19768 19768 Negative Control 46.260023 196.64882 121.4544215 2.08441333 0.083787 3 71 SH6727 6727 snR49 161-165 + 3' 161 29.374247 145.645732 87.5099895 1.942057632 -0.00785 3 72 SH20983 20983 YML056C spliced 35.905691 183.815535 109.860613 2.040842018 0.069568 3 73 SH18076 18076 YLR344W_12_819312_820142_INTRON_20_466 intron 29.536812 190.362157 29.536812 161.825345 95.6810785 1.980826062 -0.081228 3 74 SH10812 10812 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 946 966 181.802531 330.442598 256.1225645 2.408447842 0.304633 3 75 SH1107 1107 Gly4 tRNA 11 27 31.633645 136.818647 84.226146 1.925446929 0.19694 3 76 SH4988 4988 snR10 5' 27.280262 130.809903 79.0450825 1.897874857 -0.076975 3 77 SH13392 13392 MT COX1 intronic 29.312483 190.483669 29.312483 162.171186 95.7418345 1.981101745 -0.09878 3 78 SH6890 6890 snR56 81-88 + 3' 81 31.327753 150.065621 90.696687 1.957591423 0.102056 3 79 SH17041 17041 YGR183C_7_859471_859058_INTRON_4_216 intron 31.222844 189.519938 31.222844 159.297094 95.259969 1.978910436 0.046733 3 80 SH21834 21834 copy of SH16599 31.132475 200.1057 115.6190875 2.063029537 -0.244289 3 81 SH6366 6366 snR43 snR43 71 87 38.433855 197.785488 118.1096715 2.072285462 -0.042168 3 82 SH2613 2613 Pro3 tRNA 16 32 69.07282 162.087716 115.580268 2.062883697 0.779289 3 83 SH13871 13871 MT COB intronic 33.082878 207.306778 33.082878 175.2239 104.153389 2.017673406 0.052565 3 84 SH6539 6539 snR46 186-197 + 3' 186 30.982276 142.051025 86.5166505 1.937099697 0.123505 3 85 SH5837 5837 snR35 snR35 371 385 37.318756 194.832724 116.07574 2.064741461 -0.029896 3 86 SH725 725 Gln3 3' flank 33.163785 162.785403 97.974594 1.991113472 0.138421 3 87 SH14578 14578 MT 21S rRNA intronic 31.129603 187.715958 31.129603 157.586355 94.357979 1.97477863 0.049273 3 88 SH1342 1342 Ile3 tRNA-intron/exon 91 105 52.458737 219.93234 136.1955385 2.134162881 -0.08032 3 89 SH21932 21932 copy of SH21372 31.297302 160.575603 95.9364525 1.981983655 0.04402 3 90 SH20282 20282 YDR450W spliced 31.373309 150.728652 91.0509805 1.959284627 0.1015 3 91 SH15569 15569 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.304627 184.185315 29.304627 155.880688 92.5926575 1.966576549 -0.067288 3 92 SH13309 13309 MT COX1 COX1-ai5a 31.473984 177.891683 31.473984 147.417699 89.4458415 1.951560154 0.126142 3 93 SH2936 2936 Ser1 5' flank 32.56366 209.154599 120.8591295 2.082279462 -0.280809 3 94 SH14919 14919 MT tRNA Tyr tRNA / 3' 34.709023 195.852673 34.709023 162.14365 98.4263365 1.993111321 0.227568 3 95 SH20302 20302 YER003C spliced 33.640633 159.368551 96.504592 1.984547979 0.186661 3 96 SH3256 3256 Thr1 3' flank 31.502564 163.678563 97.5905635 1.989407826 0.036795 3 97 SH8484 8484 snR19 / U1 RNA 5' 31.50251 158.324213 94.9133615 1.977327355 0.070202 3 98 SH8929 8929 snR17a / U3a 5' 29.372399 156.031726 92.7020625 1.967089397 -0.063278 3 99 SH11779 11779 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5781 5799 42.246345 181.163895 111.70512 2.048073079 0.215194 3 100 SH19848 19848 Negative Control 31.540495 174.149382 102.8449385 2.012182923 -0.023957 3 101 SH1911 1911 Lys1 tRNA 11 23 42.34459 200.479197 121.4118935 2.084261232 -0.014926 3 102 SH8875 8875 LSR1 / U2 RNA U2 1016 1032 149.768624 381.307094 265.537859 2.424126449 -0.163 3 103 SH5859 5859 snR35 snR35 481 497 31.633379 153.063323 92.348351 1.965429145 0.106181 3 104 SH5371 5371 snR31 5' 31.668395 163.088261 97.378328 1.988462313 0.05028 4 2 SH15802 15802 YDL061C_4_341182_340627_INTRON_1_408 intron 35.05776 197.08081 35.05776 163.02305 99.040405 1.995812408 0.240762 4 3 SH19137 19137 YPL075W_16_412249_415357_INTRON_9_759 intron 30.869348 218.849656 30.869348 188.980308 109.924828 2.041095795 -0.15793 4 4 SH19173 19173 YPL079W_16_406631_407534_INTRON_12_432 intron 28.78639 197.728801 28.78639 169.942411 99.3644005 1.997230817 -0.174283 4 5 SH15762 15762 YCR031C_3_178212_177492_INTRON_8_314 intron 28.786523 187.238698 28.786523 159.452175 94.119349 1.973678915 -0.122658 4 6 SH6268 6268 snR42 snR42 121 143 28.774762 124.436688 76.605725 1.884261227 0.074111 4 7 SH17096 17096 YHL001W_8_104270_105084_INTRON_130_527 intron 30.848345 218.454943 30.848345 188.606598 109.7274715 2.040315372 -0.155405 4 8 SH3391 3391 Thr4 tRNA 41 57 43.401637 199.359938 121.3807875 2.084149951 0.012666 4 9 SH11386 11386 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3816 3834 27959.95105 15156.63699 21558.29402 4.333614391 0.54614 4 10 SH4769 4769 snR5 snR5 16 31 37.233596 152.733716 94.983656 1.977648882 0.419565 4 11 SH1855 1855 Leu9 tRNA 16 31 67.032865 219.952478 143.4926715 2.156829721 0.111774 4 12 SH1385 1385 Leu1 5' flank - tRNA12 12 279.655045 507.975832 393.8154385 2.595292738 0.049528 4 13 SH15796 15796 YDL061C_4_341182_340627_INTRON_1_408 intron 54.0073 281.35856 54.0073 228.35126 141.17928 2.149770963 -0.138128 4 14 SH21099 21099 YNL044W spliced 29.669138 165.675083 97.6721105 1.989770572 -0.090998 4 15 SH18000 18000 YLR287C-A_12_713158_712537_INTRON_4_433 intron 31.047814 198.893282 31.047814 168.845468 99.946641 1.999768203 -0.021964 4 16 SH3133 3133 Ser4 tRNA 71 83 30.254622 180.714581 105.4846015 2.023189067 -0.139365 4 17 SH14920 14920 MT tRNA Tyr 3' 30.531567 185.942112 30.531567 156.410545 93.471056 1.970677149 0.015084 4 18 SH13382 13382 MT COX1 Exon 5b 33.015377 179.229749 33.015377 147.214372 90.1148745 1.954796482 0.226485 4 19 SH6496 6496 snR46 5' 33.258218 169.26372 101.260969 2.005442079 0.104087 4 20 SH13885 13885 MT COB intronic 33.475419 242.28171 33.475419 209.806291 121.640855 2.085079464 -0.268048 4 21 SH10125 10125 RUF6 RUF6 471 487 31.396702 173.819413 102.6080575 2.011181466 -0.030572 4 22 SH13460 13460 MT COX1 intronic 31.563303 188.685104 31.563303 158.121801 94.842552 1.977003231 0.075239 4 23 SH14509 14509 MT 21S rRNA 21S rRNA3 29.420496 183.912492 29.420496 155.491996 92.456246 1.965936256 -0.057076 4 24 SH17505 17505 YJL136C_10_156971_156248_INTRON_25_484 intron 31.853681 233.214122 31.853681 202.360441 117.107061 2.068583082 -0.235762 4 25 SH4372 4372 telomerase RNA telomerase 896 910 76.252417 254.33647 165.2944435 2.218258255 -0.07092 4 26 SH5706 5706 snR34 snR34 451 473 29.757471 187.286941 108.522206 2.035518613 -0.206633 4 27 SH9361 9361 RUF1 RUF1 381 397 29.832849 146.624546 88.2286975 1.945609868 0.019377 4 28 SH10939 10939 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1581 1596 60.337199 182.069327 121.203263 2.083514312 0.430826 4 29 SH7615 7615 snR189 snR189 146 166 29.919779 147.86219 88.8909845 1.948857716 0.018606 4 30 SH8646 8646 snR19 / U1 RNA 3' 29.936616 148.749178 89.342897 1.951060031 0.014929 4 31 SH21096 21096 YNL044W spliced 32.280333 158.171576 95.2259545 1.978755335 0.117159 4 32 SH9907 9907 RUF5-1 RUF5-1 341 361 29.951898 142.251888 86.101893 1.9350127 0.051539 4 33 SH19346 19346 YPL249C-A_16_76239_75699_INTRON_17_254 intron 32.30607 214.58669 32.30607 183.28062 107.793345 2.032591949 -0.051757 4 34 SH14016 14016 MT COB Exon4 29.998795 168.400631 29.998795 139.401836 84.7003155 1.927885028 0.070606 4 35 SH19008 19008 YOR182C_15_678792_678190_INTRON_4_414 exon/intron 30.046288 221.158653 30.046288 192.112365 111.0793265 2.045633238 -0.218041 4 36 SH14925 14925 MT tRNA Asn 5' 30.107764 156.266375 30.107764 127.158611 78.6331875 1.895605881 0.14988 4 37 SH20411 20411 YFR032C-A spliced 34.888736 197.805761 116.3472485 2.065756117 -0.110515 4 38 SH8830 8830 LSR1 / U2 RNA U2 791 808 30.24385 138.402965 84.3234075 1.925948148 0.093344 4 39 SH13961 13961 MT COB Cytbi3 32.665626 189.780977 32.665626 158.115351 95.3904885 1.979505073 0.139701 4 40 SH18012 18012 YLR287C-A_12_713158_712537_INTRON_4_433 intron 32.708373 196.260056 32.708373 164.551683 98.630028 1.994009156 0.101607 4 41 SH4992 4992 snR10 5' - 10 -9 10 35.099308 175.716235 105.4077715 2.022872632 0.118706 4 42 SH10091 10091 RUF6 RUF6 301 322 30.351878 162.442024 96.396951 1.984063298 -0.027818 4 43 SH2 2 Ala1 5' flank 35.056254 202.227847 118.6420505 2.074238644 -0.155278 4 44 SH15488 15488 YBL092W_2_45639_46364_INTRON_1_333 intron 32.626894 248.712457 32.626894 217.085563 124.8562285 2.096410212 -0.360494 4 45 SH1016 1016 Gly2 71-72 + 3' flank 71 88 30.183539 185.737595 107.960567 2.033265157 -0.171617 4 46 SH9415 9415 RUF2 5' 30.077929 186.489904 108.2839165 2.034563955 -0.182276 4 47 SH5243 5243 snR30 snR30 66 83 32.287319 145.816085 89.051702 1.949642224 0.187939 4 48 SH12113 12113 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7451 7469 4105.535701 6176.024706 5140.780204 3.711029036 -0.509352 4 49 SH19480 19480 ADH1 44.712763 209.890141 127.301452 2.104833357 -0.084446 4 50 SH10237 10237 RUF6 RUF6 1031 1045 34.061731 199.130146 116.5959385 2.066683422 -0.142021 4 51 SH19570 19570 AEP2/ATP13 0.6 31.559815 203.155101 117.357458 2.069510694 -0.253479 4 52 SH9805 9805 RUF4 3' 33.624004 205.868587 119.7462955 2.078262087 -0.223651 4 53 SH15036 15036 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 31.135965 191.8522 31.135965 161.716235 96.4261 1.984194602 0.027167 4 54 SH5305 5305 snR30 snR30 376 393 33.151225 169.131018 101.1411215 2.004927765 0.09886 4 55 SH15887 15887 YDL082W_4_308423_309387_INTRON_5_369 intron 32.900871 175.434839 32.900871 143.533968 88.2174195 1.94555435 0.239784 4 56 SH2012 2012 Lys3 tRNA 6 22 37.058453 152.582242 94.8203475 1.976901543 0.411759 4 57 SH16966 16966 YGR034W_7_555923_556666_INTRON_20_496 intron 30.192135 199.180975 30.192135 169.98884 100.0904875 2.000392805 -0.081065 4 58 SH17698 17698 YKL006W_11_431544_432358_INTRON_130_527 3' exon 34.286649 198.491421 34.286649 165.204772 99.7457105 1.998894228 0.185678 4 59 SH4536 4536 U3b (snR17b) U3b 236 251 51.297228 216.000408 133.648818 2.125965122 -0.056367 4 60 SH6239 6239 snR42 5' 28.408227 134.864169 81.636198 1.91188277 -0.018341 4 61 SH18589 18589 YNL050C_14_534978_534075_INTRON_18_108 intron/exon 29.261656 170.99653 29.261656 142.734874 85.998265 1.93448969 -0.000206 4 62 SH11336 11336 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3566 3579 33.287525 163.116152 98.2018385 1.992119619 0.143321 4 63 SH14520 14520 MT 21S rRNA 21S rRNA3 33.112691 206.313476 33.112691 174.200785 103.656738 2.015597538 0.063525 4 64 SH2410 2410 Phe4 3' flank 28.813671 139.949276 84.3814735 1.926247105 -0.017339 4 65 SH12635 12635 MT_15S MT_15S 28.761402 168.420059 28.761402 140.658657 84.7100295 1.927934833 -0.025103 4 66 SH11415 11415 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3961 3980 87.617554 257.075068 172.346311 2.236401992 0.035615 4 67 SH5881 5881 snR35 3' 28.834004 150.052162 89.443083 1.95154676 -0.070173 4 68 SH15219 15219 MT COX3 cox3 31.041924 170.316813 31.041924 140.274889 85.6584065 1.932769991 0.13769 4 69 SH16798 16798 YGL137W_7_249872_252741_INTRON_19_218 exon/intron 29.082883 205.95785 29.082883 177.874967 103.478925 2.014851908 -0.197113 4 70 SH1847 1847 Leu9 5' flank 29.223031 149.58421 89.4036205 1.951355106 -0.039673 4 71 SH13012 13012 MT COX1 COX1ai2 29.341185 209.578676 29.341185 181.237491 105.289338 2.022384395 -0.19961 4 72 SH13936 13936 MT COB Cytbi3 31.548836 219.674518 31.548836 189.125682 110.337259 2.042722191 -0.133145 4 73 SH21714 21714 copy of SH11499 35.84657 174.880367 105.3634685 2.022690059 0.151989 4 74 SH18946 18946 YOL127W_15_80347_81189_INTRON_14_427 intron 31.546948 198.485104 31.546948 167.938156 99.742552 1.998880476 0.013324 4 75 SH14638 14638 MT 21S rRNA Sce1 endonuc 29.347367 172.578761 29.347367 144.231394 86.7893805 1.938466588 -0.002174 4 76 SH13869 13869 MT COB intronic 37.737984 227.945113 37.737984 191.207129 114.4725565 2.058701382 0.018917 4 77 SH16044 16044 YDL191W_4_117665_118518_INTRON_4_494 intron 33.371277 210.135996 33.371277 177.764719 105.567998 2.023532286 0.038669 4 78 SH7109 7109 snR63 snR63 51 70 30.099429 159.91489 95.0071595 1.977756334 -0.032449 4 79 SH17456 17456 YIL148W_9_68708_69528_INTRON_9_442 intron 33.161977 194.577992 33.161977 162.416015 97.788996 1.990289987 0.140627 4 80 SH2939 2939 Ser1 5' flank 30.995306 172.49212 101.743713 2.007507583 -0.046838 4 81 SH13043 13043 MT COX1 COX1ai2 30.953226 170.218123 30.953226 140.264897 85.6090615 1.932519736 0.131759 4 82 SH14729 14729 MT tRNA cys; tRNA his intergenic / tRNA his 28.845832 189.060896 28.845832 161.215064 95.030448 1.977862777 -0.127294 4 83 SH11438 11438 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4076 4091 39.322311 201.692567 120.507439 2.081013857 -0.073155 4 84 SH17472 17472 YJL001W_10_434855_435618_INTRON_66_181 5' exon 182.926584 520.111487 182.926584 338.184903 260.5557435 2.415900651 0.270004 4 85 SH6222 6222 snR40 3' 31.020468 191.892823 111.4566455 2.047105968 -0.177888 4 86 SH3824 3824 RNaseP RNaseP 86 100 101.659323 267.288925 184.474124 2.265935457 0.102026 4 87 SH16180 16180 YDR305C_4_1073479_1072737_INTRON_88_176 3' exon 31.165792 210.254681 31.165792 180.088889 105.6273405 2.023776345 -0.080372 4 88 SH17564 17564 YJL189W_10_75932_76473_INTRON_7_392 intron 31.247722 173.023925 31.247722 142.776203 87.0119625 1.939578964 0.137085 4 89 SH14688 14688 MT 21S rRNA 21S rRNA4 / 3' 31.324756 173.30257 31.324756 142.977814 87.151285 1.940273795 0.141052 4 90 SH19753 19753 Negative Control 33.513606 184.984635 109.2491205 2.038417949 -0.023413 4 91 SH9298 9298 RUF1 RUF1 66 83 29.313629 137.938117 83.625873 1.922340665 0.030171 4 92 SH11162 11162 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2696 2719 29.34399 149.825393 89.5846915 1.952233802 -0.032406 4 93 SH19872 19872 Negative Control 35.752746 199.485943 117.6193445 2.070478755 -0.111629 4 94 SH18696 18696 YNL130C_14_381156_379555_INTRON_30_470 5' exon 40.036166 255.193323 40.036166 216.157157 128.0966615 2.107537811 -0.220637 4 95 SH21084 21084 YMR292W spliced 33.641082 160.028839 96.8349605 1.98603218 0.182485 4 96 SH18529 18529 YMR225C_13_721402_720959_INTRON_59_205 3' exon 31.520031 198.771462 31.520031 168.251431 99.885731 1.999503452 0.009835 4 97 SH5069 5069 snR11 5' 30.469818 152.504362 91.48709 1.961359814 0.03137 4 98 SH19237 19237 YPL090C_16_378390_377286_INTRON_7_400 intron 33.69619 222.702091 33.69619 190.005901 111.8510455 2.048640048 -0.062099 4 99 SH13537 13537 MT COX1 intronic 31.589696 214.81522 31.589696 184.225524 107.90761 2.033052074 -0.087297 4 100 SH11395 11395 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3861 3877 34766.82028 30340.93065 32553.87546 4.512602698 -0.273703 4 101 SH6596 6596 snR47 86-99 + 3' 86 33.817495 149.133686 91.4755905 1.961305222 0.263902 4 102 SH20212 20212 YDR064W spliced 46.872044 201.816763 124.3444035 2.094626243 0.033775 4 103 SH12925 12925 MT COX1 COX1ai2 530.908435 1371.426643 530.908435 841.518208 686.2133215 2.836459145 0.001324 4 104 SH3502 3502 Tyr1 tRNA-intron/exon 51 67 134.778181 265.636055 200.207118 2.301479514 0.392838 5 2 SH14157 14157 MT COB intronic 28.83048 218.307433 28.83048 190.476953 109.6537165 2.040023356 -0.282953 5 3 SH10498 10498 RUF8 RUF8 416 435 28.876043 158.446503 93.661273 1.971560056 -0.111089 5 4 SH6237 6237 snR42 5' 26.798787 145.773688 86.2862375 1.935941532 -0.201793 5 5 SH19511 19511 ACT1 28.897932 146.754677 87.8263045 1.943624609 -0.048192 5 6 SH21270 21270 YPL090C spliced 37.27336 209.358015 123.3156875 2.091018329 -0.190513 5 7 SH14893 14893 MT tRNA Ile 5' 26.77276 161.13898 26.77276 135.36622 81.06949 1.908857441 -0.143971 5 8 SH369 369 Asn1 5' flank 35.124894 165.385393 100.2551435 2.001106663 0.221826 5 9 SH14392 14392 MT 21S rRNA 5' / 21S rRNA3 37.233912 219.498295 37.233912 183.264383 110.2491475 2.04237524 0.101807 5 10 SH17302 17302 YHR203C_8_505526_504472_INTRON_15_283 5' exon 39.403267 234.553185 39.403267 196.149918 117.7765925 2.071058985 -0.008242 5 11 SH7250 7250 snR65 snR65 26 45 31.12744 140.190794 85.659117 1.932773593 0.143885 5 12 SH11621 11621 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4991 5006 35.541205 166.090396 100.8158005 2.003528603 0.228762 5 13 SH16550 16550 YER133W_5_432491_433954_INTRON_178_702 intron 27.291254 167.653083 27.291254 141.361829 84.3265415 1.925964289 -0.139492 5 14 SH1718 1718 Leu6 3' flank 31.834711 174.254567 103.044639 2.013025402 -0.007214 5 15 SH4929 4929 snR9 snR9 51 67 29.975469 182.839375 106.407422 2.026971921 -0.16857 5 16 SH6401 6401 snR43 3' 28.080016 132.345104 80.21256 1.904242377 -0.027218 5 17 SH10229 10229 RUF6 RUF6 991 1010 28.341313 127.174991 77.758152 1.890745931 0.024856 5 18 SH6716 6716 snR49 snR49 106 125 30.810409 200.554142 115.6822755 2.063266823 -0.260524 5 19 SH7867 7867 snoRNA cluster1 snR73 44.551823 198.802799 44.551823 155.250976 99.9013995 1.999571572 0.590039 5 20 SH4000 4000 RNase MRP 3' 31.257413 183.906873 107.582143 2.031740191 -0.097043 5 21 SH14927 14927 MT tRNA Asn 5' 31.44925 218.715786 31.44925 188.266536 109.857893 2.040831265 -0.129249 5 22 SH18095 18095 YLR367W_12_855877_857316_INTRON_698_1180 intron 31.624167 194.091559 31.624167 163.467392 97.5457795 1.989208484 0.045308 5 23 SH17396 17396 YIL069C_9_232366_231550_INTRON_4_412 intron 29.486106 167.677708 29.486106 139.191602 84.338854 1.926027696 0.035477 5 24 SH12723 12723 MT COX1 5' 29.618661 186.496956 29.618661 157.878295 93.748478 1.971964226 -0.055482 5 25 SH17278 17278 YHR141C_8_382752_381991_INTRON_5_445 intron 29.733209 165.438919 29.733209 136.70571 83.2194595 1.920224891 0.067097 5 26 SH13811 13811 MT COB Cytbi2 29.826198 167.968778 29.826198 139.14258 84.484389 1.926776468 0.059904 5 27 SH7740 7740 snoRNA cluster1 intergenic 29.894501 162.543567 29.894501 133.649066 81.7717835 1.91260347 0.096113 5 28 SH17869 17869 YLL050C_12_40413_39803_INTRON_15_193 intron 34.603588 249.539106 34.603588 215.935518 125.269553 2.097845528 -0.307311 5 29 SH13781 13781 MT COB intronic 32.288964 188.380823 32.288964 157.091859 94.6904115 1.976306004 0.124618 5 30 SH20644 20644 YHR203C spliced 1025.627239 1518.924199 1272.275719 3.104581239 -0.11324 5 31 SH426 426 Asp1 5' flank 32.277491 190.961219 111.619355 2.047739509 -0.12209 5 32 SH11240 11240 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3086 3101 25252.92871 20622.97243 22937.95057 4.360554612 -0.075262 5 33 SH13932 13932 MT COB Cytbi3 29.931938 193.280454 29.931938 164.348516 97.140227 1.987399114 -0.066184 5 34 SH2287 2287 Phe2 tRNA-exon/intron 31 48 29.944969 185.670177 107.807573 2.032649269 -0.186082 5 35 SH17755 17755 YKL157W_11_154993_158183_INTRON_282_664 intron 32.310232 214.609409 32.310232 183.299177 107.8047045 2.032637713 -0.051773 5 36 SH21894 21894 copy of SH18999 30.017194 188.329348 109.173271 2.038116323 -0.196027 5 37 SH10169 10169 RUF6 RUF6 691 703 32.409833 164.704113 98.556973 1.993687356 0.083526 5 38 SH17125 17125 YHR010W_8_126513_127484_INTRON_32_592 intron 30.114359 168.94108 30.114359 139.826721 84.97054 1.929268378 0.076332 5 39 SH472 472 Asp2 5' flank 32.502885 175.833965 104.168425 2.017736098 0.022449 5 40 SH17076 17076 YGR225W_7_945138_946919_INTRON_1184_1276 intron 30.176257 180.199328 30.176257 151.023071 90.599664 1.957126587 0.019186 5 41 SH15433 15433 YBL072C_2_89435_88518_INTRON_1_308 intron 34.888899 223.599492 34.888899 189.710593 112.299746 2.050378774 -0.019506 5 42 SH10263 10263 RUF7 5' 30.168596 183.816224 106.99241 2.02935297 -0.161978 5 43 SH1328 1328 Ile3 tRNA 21 37 32.485333 152.044482 92.2649075 1.965036551 0.166744 5 44 SH18119 18119 YLR388W_12_898158_898821_INTRON_1_488 5' exon 33.603347 227.069488 33.603347 194.466141 114.034744 2.057037192 -0.104558 5 45 SH12890 12890 MT COX1 COX1ai1 32.353511 208.996886 32.353511 177.643375 104.998443 2.021182859 0.002718 5 46 SH265 265 Arg4 5' flank 32.255009 152.776013 92.515511 1.966214552 0.148089 5 47 SH2944 2944 Ser1 5' flank 29.810594 146.0422 87.926397 1.944119277 0.021052 5 48 SH21622 21622 copy of SH7517 349.838913 670.655873 510.247393 2.707780794 -0.143972 5 49 SH9923 9923 RUF5-1 RUF5-1 421 442 34.135695 199.889759 117.012727 2.068233101 -0.148778 5 50 SH2280 2280 Phe2 5' flank - tRNA12 12 41.978747 172.566516 107.2726315 2.030488934 0.31766 5 51 SH16752 16752 YGL076C_7_365994_364333_INTRON_565_1032 intron 31.460671 184.68908 31.460671 154.228409 92.84454 1.967756369 0.088677 5 52 SH15523 15523 YBR048W_2_332790_333771_INTRON_46_556 intron 32.384481 212.286996 32.384481 180.902515 106.643498 2.027934382 -0.026814 5 53 SH11014 11014 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1956 1969 76.223648 232.439279 154.3314635 2.188454475 0.108739 5 54 SH18941 18941 YOL127W_15_80347_81189_INTRON_14_427 5' exon 33.02907 232.916608 33.02907 200.887538 116.958304 2.068031062 -0.182938 5 55 SH20274 20274 YDR447C spliced 36.087257 197.385307 116.736282 2.067205857 -0.081985 5 56 SH1425 1425 Leu1 3' flank 33.594597 184.264565 108.929581 2.037145833 -0.01394 5 57 SH15592 15592 YBR089C-A_2_426588_426148_INTRON_1_114 5' exon 32.225378 232.588127 32.225378 201.362749 116.7940635 2.067420769 -0.213525 5 58 SH20600 20600 YHR041C spliced 34.114917 177.273642 105.6942795 2.024051483 0.069739 5 59 SH601 601 Gln1 tRNA 46 60 35.982011 207.025928 121.5039695 2.084590466 -0.187907 5 60 SH13051 13051 MT COX1 COX1ai2 29.337732 188.008846 29.337732 159.671114 94.504423 1.975452135 -0.084407 5 61 SH11965 11965 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6711 6728 65.154648 195.925906 130.540277 2.11574453 0.329941 5 62 SH6150 6150 snR39B 91-96 + 3' 91 28.96747 117.373472 73.170471 1.864335851 0.136268 5 63 SH7913 7913 snoRNA cluster1 intergenic/snR72 28.836409 185.326102 28.836409 157.489693 93.163051 1.969243703 -0.109033 5 64 SH10909 10909 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1431 1448 36332.17499 40246.80043 38289.48771 4.583079556 -0.664921 5 65 SH7031 7031 snR62 5' 30.80051 145.886632 88.343571 1.94617495 0.08971 5 66 SH2607 2607 Pro3 5' flank - tRNA2 2 30.828034 171.314838 101.071436 2.004628436 -0.049996 5 67 SH3816 3816 RNaseP RNaseP 46 58 30.909734 163.69111 97.300422 1.988114724 0.001202 5 68 SH17101 17101 YHL001W_8_104270_105084_INTRON_130_527 intron 27.891813 165.592592 27.891813 138.700779 83.296296 1.92062569 -0.078839 5 69 SH6193 6193 snR40 snR40 26 41 35.381904 178.439298 106.910601 2.029020771 0.102363 5 70 SH667 667 Gln2 3' flank 29.19197 175.399547 102.2957585 2.009857627 -0.175875 5 71 SH18336 18336 YML124C_13_23684_22049_INTRON_26_323 exon/intron 29.286375 180.6472 29.286375 152.360825 90.8236 1.958198712 -0.050079 5 72 SH20777 20777 YKL006C-A spliced 31.457037 182.247884 106.8524605 2.028784527 -0.075092 5 73 SH17420 17420 YIL111W_9_155219_155762_INTRON_2_89 intron 29.331093 176.85044 29.331093 148.519347 88.92522 1.949024948 -0.026226 5 74 SH4291 4291 telomerase RNA telomerase 491 510 29.278058 152.412918 90.845488 1.958303362 -0.050945 5 75 SH20079 20079 YCR031C spliced 31.299808 145.690947 88.4953775 1.946920586 0.12417 5 76 SH13470 13470 MT COX1 intronic 31.183558 202.989214 31.183558 172.805656 101.994607 2.008577209 -0.037363 5 77 SH13353 13353 MT COX1 intronic 34.213282 232.992143 34.213282 199.778861 116.9960715 2.068171279 -0.145963 5 78 SH14830 14830 "MT tRNAs (Lys, Arg1, Gly)" 3' 30.965329 212.686453 30.965329 182.721124 106.8432265 2.028746995 -0.107178 5 79 SH4356 4356 telomerase RNA telomerase 816 835 30.889692 157.164285 94.0269885 1.973252527 0.03539 5 80 SH3207 3207 Ser5 3' flank 28.763414 138.565009 83.6642115 1.922539722 -0.013269 5 81 SH1379 1379 Leu1 5' flank 30.828652 184.922839 107.8757455 2.03292381 -0.127617 5 82 SH6721 6721 snR49 snR49 131 152 28.75961 111.645591 70.2026005 1.8463532 0.163084 5 83 SH7277 7277 snR65 3' 28.792392 149.487154 89.139773 1.950071524 -0.070275 5 84 SH6312 6312 snR42 341-351 + 3' 341 30.930765 146.813882 88.8723235 1.948766535 0.093336 5 85 SH7141 7141 snR63 snR63 211 223 45.69198 204.981677 125.3368285 2.098078701 -0.017438 5 86 SH21120 21120 YNL112W spliced 47.920806 211.205893 129.5633495 2.112482167 -0.053842 5 87 SH6971 6971 snR60 5' 29.059015 132.766235 80.912625 1.908016291 0.041579 5 88 SH8289 8289 snoRNA cluster4 intergenic 29.132113 185.008608 29.132113 156.876495 93.004304 1.968503047 -0.084699 5 89 SH10956 10956 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1666 1683 2735.685445 801.19379 1768.439618 3.247590236 2.176561 5 90 SH13618 13618 MT ATP6 5' / ATP6 29.245562 168.912797 29.245562 140.667235 84.9563985 1.929196093 0.010007 5 91 SH3858 3858 RNaseP RNaseP 256 271 33.522211 139.879747 86.700979 1.938024001 0.299502 5 92 SH19153 19153 YPL075W_16_412249_415357_INTRON_9_759 intron 33.5484 168.601657 33.5484 136.053257 84.8008285 1.928400095 0.323592 5 93 SH17757 17757 YKL157W_11_154993_158183_INTRON_282_664 intron 33.565571 200.03853 33.565571 167.472959 100.519265 2.002249304 0.132089 5 94 SH165 165 Arg2 5' flank 31.455163 145.807088 88.6311255 1.947586264 0.1338 5 95 SH12000 12000 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6886 6903 39.986123 198.491606 119.2388645 2.076417832 -0.02655 5 96 SH677 677 Gln3 5' flank 29.369381 153.667386 91.5183835 1.961508341 -0.051122 5 97 SH1501 1501 Leu3 5' flank 31.528163 169.451964 100.4900635 2.002123121 0.003093 5 98 SH14756 14756 MT ORF11; tRNA Leu; tRNA Gln ORF11 31.569967 178.671168 31.569967 148.101201 89.835584 1.953448395 0.128714 5 99 SH1261 1261 Ile2 tRNA 1 13 31.619384 154.681221 93.1503025 1.96918427 0.096745 5 100 SH3407 3407 Thr4 3' flank 29.531647 153.425175 91.478411 1.961318612 -0.03841 5 101 SH12240 12240 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.730894 186.730052 31.730894 155.999158 93.865026 1.972503805 0.097178 5 102 SH4927 4927 snR9 snR9 41 57 38.271995 151.29816 94.7850775 1.97673997 0.474846 5 103 SH8992 8992 snR17a / U3a U3a 246 262 34.009454 158.516099 96.2627765 1.983458384 0.212494 5 104 SH1121 1121 Gly4 3' flank 31.88886 137.222504 84.555682 1.927142797 0.211375 6 2 SH2565 2565 Pro2 tRNA-intron/exon 61 75 52.253499 213.953291 133.103395 2.124189133 -0.022739 6 3 SH16144 16144 YDR092W_4_629869_630598_INTRON_31_298 intron 31.059263 203.594304 31.059263 173.535041 102.297152 2.009863543 -0.049109 6 4 SH21900 21900 copy of SH19200 26.877658 118.141078 72.509368 1.86039412 -0.022897 6 5 SH12621 12621 MT_15S MT_15S 35.297073 230.689167 35.297073 196.392094 115.8445835 2.063875732 -0.086662 6 6 SH10690 10690 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 336 354 35.273845 177.130371 106.202108 2.026133137 0.111123 6 7 SH13076 13076 MT COX1 COX1ai3 26.855235 177.670846 26.855235 151.815611 89.335423 1.951023698 -0.22901 6 8 SH15881 15881 YDL082W_4_308423_309387_INTRON_5_369 intron 31.025624 223.308378 31.025624 193.282754 112.154189 2.049815499 -0.189867 6 9 SH4680 4680 snR4 5' 28.936582 134.003529 81.4700555 1.910998012 0.025458 6 10 SH17106 17106 YHR001W-A_8_107819_108115_INTRON_7_69 5' exon 31.077037 213.986615 31.077037 183.909578 107.4933075 2.031381426 -0.107033 6 11 SH16858 16858 YGL187C_7_150529_149708_INTRON_1_342 5' exon 35.39269 230.155365 35.39269 195.762675 115.5776825 2.062873982 -0.077757 6 12 SH9186 9186 snR7 U5 RNA U5 201 213 9842.057155 8860.225309 9351.141232 3.970864616 0.04827 6 13 SH18915 18915 YOL120C_15_94401_93394_INTRON_113_559 3' exon 35.842376 198.343727 35.842376 163.501351 99.6718635 1.998572578 0.265382 6 14 SH9308 9308 RUF1 RUF1 116 133 29.705136 144.4711 87.088118 1.939958905 0.022052 6 15 SH6284 6284 snR42 snR42 201 220 32.157636 192.127178 112.142407 2.049769873 -0.136819 6 16 SH2118 2118 Met1 5' flank 30.279543 168.558529 99.419036 1.997469548 -0.067075 6 17 SH18918 18918 YOL121C_15_92849_92025_INTRON_21_410 5' exon 41.627383 253.652481 41.627383 213.025098 127.3262405 2.104917916 -0.16324 6 18 SH7803 7803 snoRNA cluster1 snR75 33.052673 170.138906 33.052673 138.086233 85.569453 1.932318756 0.280683 6 19 SH9240 9240 snR6 / U6 RNA U6 71 86 95.493454 291.038916 193.266185 2.286155874 -0.121644 6 20 SH626 626 Gln2 5' flank 29.021199 140.862262 84.9417305 1.929121105 -0.007292 6 21 SH14597 14597 MT 21S rRNA Sce1 endonuc 31.478336 216.933624 31.478336 186.455288 108.966812 2.037294245 -0.111829 6 22 SH6552 6552 snR46 3' 31.658781 148.7973 90.2280405 1.955341526 0.130745 6 23 SH5107 5107 snR11 snR11 136 151 31.822706 149.355457 90.5890815 1.957075856 0.13843 6 24 SH7933 7933 snoRNA cluster1 snR72/3' 34.278987 213.807217 34.278987 180.52823 107.4036085 2.031018873 0.044787 6 25 SH16617 16617 YFL039C_6_54695_53260_INTRON_11_318 intron 29.7736 217.783043 29.7736 189.009443 109.3915215 2.038983663 -0.214922 6 26 SH11299 11299 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3381 3398 784.344571 1169.485933 976.915252 2.98985689 -0.039568 6 27 SH9730 9730 RUF4 RUF4 426 442 31.086931 195.327535 113.207233 2.053874176 -0.205261 6 28 SH2749 2749 Pro5 3' flank 29.952527 188.043641 108.998084 2.037418864 -0.198516 6 29 SH18578 18578 YNL044W_14_545264_545873_INTRON_25_103 intron 32.286983 221.907368 32.286983 190.620385 111.453684 2.047094428 -0.118724 6 30 SH10440 10440 RUF8 RUF8 126 142 32.267626 189.528161 110.8978935 2.044923297 -0.109745 6 31 SH5221 5221 snR30 5' 32.23658 129.371188 80.803884 1.907432237 0.280322 6 32 SH21217 21217 YOR122C spliced 35.698173 203.297671 119.497922 2.077360353 -0.153932 6 33 SH1527 1527 Leu3 106-114 + 3' flank 106 29.859999 146.18524 88.0226195 1.944594289 0.023696 6 34 SH5824 5824 snR35 snR35 306 323 29.85579 141.98526 85.920525 1.934096922 0.046232 6 35 SH2783 2783 Pro6 tRNA 6 22 241.561395 470.169547 355.865471 2.551285851 0.007005 6 36 SH12264 12264 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.220345 225.717291 32.220345 194.496946 113.3586455 2.054454648 -0.155171 6 37 SH851 851 Glu2 tRNA 21 37 149.816153 381.190049 265.503101 2.424069598 -0.162103 6 38 SH13960 13960 MT COB Cytbi3 29.953083 181.454225 29.953083 152.501142 91.2271125 1.960123929 -0.00411 6 39 SH108 108 Arg1 5' flank 29.973957 144.844567 87.409262 1.941557453 0.039014 6 40 SH3435 3435 Trp1 tRNA 6 18 267.882965 474.18665 371.0348075 2.569414654 0.114669 6 41 SH19300 19300 YPL198W_16_173151_174701_INTRON_12_420 intron 32.31111 212.381704 32.31111 181.070594 106.690852 2.028127183 -0.031099 6 42 SH15955 15955 YDL130W_4_229906_230527_INTRON_115_415 intron 32.290443 213.912667 32.290443 182.622224 107.4563335 2.031232018 -0.046264 6 43 SH18006 18006 YLR287C-A_12_713158_712537_INTRON_4_433 intron 31.090397 214.999261 31.090397 184.908864 107.9996305 2.03342227 -0.11263 6 44 SH10349 10349 RUF7 RUF7 356 375 29.880373 130.209643 80.045008 1.903334252 0.115435 6 45 SH18334 18334 YML124C_13_23684_22049_INTRON_26_323 5' exon 32.143463 216.333047 32.143463 185.189584 108.6665235 2.036095773 -0.075286 6 46 SH1365 1365 Ile3 3' flank 29.746217 138.99483 84.3705235 1.926190744 0.055077 6 47 SH15662 15662 YBR189W_2_604466_605466_INTRON_8_420 intron 34.274395 220.20077 34.274395 186.926375 110.600385 2.043756639 -0.014144 6 48 SH17635 17635 YJR094W-A_10_608000_608553_INTRON_3_277 intron 29.542576 155.91099 29.542576 127.368414 78.455495 1.894623367 0.108971 6 49 SH19398 19398 YPR063C_16_678315_677807_INTRON_42_127 exon/intron 29.412392 153.662682 29.412392 125.25029 77.331341 1.888355541 0.113786 6 50 SH20164 20164 YDL136W spliced 38.390544 219.135744 128.763144 2.109791572 -0.277101 6 51 SH19010 19010 YOR182C_15_678792_678190_INTRON_4_414 intron 31.36115 177.71364 31.36115 147.35249 89.35682 1.951127705 0.119047 6 52 SH6835 6835 snR52 81-92 + 3' 81 31.159994 143.217478 87.188736 1.940460382 0.12875 6 53 SH6928 6928 snR58 snR58 1 21 32.057874 151.974279 92.0160765 1.963863711 0.139629 6 54 SH1270 1270 Ile2 tRNA-intron 46 61 32.921534 150.906392 91.913963 1.963381492 0.200512 6 55 SH2766 2766 Pro6 5' flank 39.266239 225.650513 132.458376 2.122079426 -0.329892 6 56 SH6333 6333 snR43 5' 114.432544 287.753084 201.092814 2.303396551 0.078096 6 57 SH1197 1197 Ile1 5' flank 36.427298 147.830754 92.129026 1.96439648 0.411788 6 58 SH15550 15550 YBR078W_2_393082_394818_INTRON_59_388 intron 31.823904 190.101184 31.823904 159.27728 95.550592 1.980233382 0.083461 6 59 SH19776 19776 Negative Control 33.69813 187.314785 110.5064575 2.043387657 -0.037959 6 60 SH12946 12946 MT COX1 COX1ai2 31.336171 212.745551 31.336171 182.40938 106.8727755 2.028867088 -0.083188 6 61 SH16297 16297 YDR450W_4_1359912_1360787_INTRON_48_482 intron 31.133893 203.324247 31.133893 173.190354 102.1621235 2.009289911 -0.042602 6 62 SH16203 16203 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron/exon 28.881148 194.176412 28.881148 166.295264 97.588206 1.989397334 -0.149888 6 63 SH17129 17129 YHR010W_8_126513_127484_INTRON_32_592 intron 26.690709 160.293682 26.690709 134.602973 80.646841 1.90658736 -0.145597 6 64 SH9575 9575 RUF3 RUF3 261 277 30.778032 178.581599 104.6798155 2.019862949 -0.095238 6 65 SH15430 15430 YBL072C_2_89435_88518_INTRON_1_308 intron 30.763762 230.644454 30.763762 200.880692 115.822227 2.063791911 -0.265084 6 66 SH2804 2804 Pro6 3' flank 28.727903 132.657424 80.6926635 1.906834051 0.018083 6 67 SH10894 10894 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1356 1376 113.375001 284.849919 199.11246 2.299098438 0.088024 6 68 SH5905 5905 snR36 5' 33.102779 197.794786 115.4487825 2.062389357 -0.151176 6 69 SH19077 19077 YOR293W_15_867094_867848_INTRON_53_489 intron 29.040299 193.378188 29.040299 165.337889 97.189094 1.987617534 -0.133806 6 70 SH18079 18079 YLR344W_12_819312_820142_INTRON_20_466 intron 29.145756 168.537057 29.145756 140.391301 84.7685285 1.928234644 0.004338 6 71 SH8255 8255 snoRNA cluster4 5' 31.327877 212.999246 31.327877 182.671369 106.999623 2.029382248 -0.085141 6 72 SH5781 5781 snR35 snR35 91 105 35.582251 130.623618 83.1029345 1.91961636 0.478732 6 73 SH7173 7173 snR64 5' 31.318934 126.977494 79.148214 1.898441119 0.234054 6 74 SH12153 12153 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7651 7666 386.59988 508.748106 447.673993 2.650961865 0.438052 6 75 SH9019 9019 snR17a / U3a U3a 381 402 31.121556 167.41499 99.268273 1.996810466 -0.008885 6 76 SH4367 4367 telomerase RNA telomerase 871 888 35.175616 216.346752 125.761184 2.099546617 -0.300317 6 77 SH14505 14505 MT 21S rRNA 21S rRNA3 70.629929 323.685541 70.629929 254.055612 162.3427705 2.210432953 -0.136582 6 78 SH11414 11414 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3956 3973 3436.797401 2240.817576 2838.807489 3.453135942 0.863613 6 79 SH3541 3541 Tyr2 5' flank 34.856039 187.396786 111.1264125 2.045817294 0.001774 6 80 SH6586 6586 snR47 snR47 36 55 32.753504 196.064121 114.4088125 2.058459478 -0.149053 6 81 SH6408 6408 snR43 3' 30.690288 169.24389 99.967089 1.999857046 -0.04601 6 82 SH18520 18520 YMR225C_13_721402_720959_INTRON_59_205 5' exon 30.726178 160.620545 30.726178 130.894367 80.8102725 1.907466571 0.170136 6 83 SH15858 15858 YDL079C_4_314747_312950_INTRON_413_704 intron 30.785117 174.558399 30.785117 144.773282 87.7791995 1.943391616 0.094879 6 84 SH19488 19488 YPT1 31.901397 188.45287 110.1771335 2.042091469 -0.113818 6 85 SH6525 6525 snR46 snR46 116 133 33.033453 192.177093 112.605273 2.051558728 -0.105068 6 86 SH8665 8665 LSR1 / U2 RNA 5' 28.939324 133.945432 81.442378 1.910850446 0.025996 6 87 SH13291 13291 MT COX1 COX1-ai5a 29.016408 227.074213 29.016408 199.057805 114.0371065 2.057046189 -0.319752 6 88 SH6576 6576 snR47 5' - 2 -14 2 31.187425 204.184638 117.6860315 2.070724918 -0.276228 6 89 SH9204 9204 snR7 U5 RNA 3' 29.137913 147.52281 88.3303615 1.946110008 -0.034843 6 90 SH14326 14326 MT VAR1 includes 5’ processing site VAR1 31.287214 184.847808 31.287214 154.560594 92.923904 1.968127447 0.07546 6 91 SH5417 5417 snR31 snR31 151 163 270.567835 352.402411 311.485123 2.493437309 0.635962 6 92 SH21482 21482 copy of SH1655 33.446997 194.278532 113.8627645 2.056381724 -0.108516 6 93 SH1480 1480 Leu2 3' flank 35.578723 215.030474 125.3045985 2.097967009 -0.279533 6 94 SH19825 19825 Negative Control 33.479137 174.305647 103.892392 2.016583746 0.075694 6 95 SH15630 15630 YBR181C_2_592732_591670_INTRON_7_358 intron/exon 30.328637 184.531453 30.328637 155.202816 92.7657265 1.96738755 0.007523 6 96 SH9752 9752 RUF4 RUF4 536 548 35.666848 196.970965 116.3189065 2.065650311 -0.085699 6 97 SH16329 16329 YDR471W_4_1401759_1402553_INTRON_32_415 intron 31.472327 216.663209 31.472327 186.190882 108.8316045 2.036755032 -0.109663 6 98 SH1267 1267 Ile2 tRNA exon/intron 31 47 35.793434 191.169017 113.4812255 2.054924017 -0.018076 6 99 SH4476 4476 U3b (snR17b) 5' 31.602172 167.808219 99.7051955 1.998717789 0.01738 6 100 SH21360 21360 Ile2_3 spliced 31.676509 176.658223 104.167366 2.017731683 -0.030445 6 101 SH18250 18250 YML034W_13_209525_212155_INTRON_1921_2046 intron 29.604326 176.94791 29.604326 148.343584 88.973955 1.949262896 -0.006023 6 102 SH2949 2949 Ser1 5' flank 32.903457 202.493092 117.6982745 2.070770096 -0.202971 6 103 SH1235 1235 Ile1 3' flank 34.059839 166.724859 100.392349 2.001700616 0.163965 6 104 SH7334 7334 snR66 3' 31.950485 181.02469 106.4875875 2.027298988 -0.044116 7 2 SH15012 15012 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 31.048115 223.980153 31.048115 193.932038 112.4900765 2.051114212 -0.194658 7 3 SH13868 13868 MT COB intronic 29.001005 201.513694 29.001005 173.512689 101.256847 2.0054244 -0.177156 7 4 SH7097 7097 snR63 5' - 10 -9 10 26.933271 144.320121 85.626696 1.932609187 -0.183441 7 5 SH6622 6622 snR48 5' 26.947736 143.55886 85.253298 1.930711189 -0.178188 7 6 SH8461 8461 snoRNA cluster 5 snR128/3' 45.911241 248.380007 45.911241 203.468766 124.6900035 2.095831637 0.002272 7 7 SH3553 3553 Tyr2 tRNA-exon/intron 36 55 31.124447 156.226801 93.675624 1.971626595 0.055949 7 8 SH8336 8336 snoRNA cluster4 snR53 33.205194 215.215541 33.205194 183.010347 108.1077705 2.033856911 -0.016382 7 9 SH12981 12981 MT COX1 COX1ai2 29.00981 185.141661 29.00981 157.131851 93.0708305 1.968813589 -0.094748 7 10 SH19221 19221 YPL081W_16_404945_406039_INTRON_8_508 3' exon 37.457641 219.82305 37.457641 183.365409 110.411525 2.043014408 0.104845 7 11 SH20829 20829 YKR094C spliced 31.243359 151.394286 91.3188225 1.960560303 0.089317 7 12 SH6078 6078 snR37 snR37 306 322 39.882466 138.44896 89.165713 1.950197887 0.647805 7 13 SH2433 2433 Phe5 5' flank 31.616724 188.712771 110.1647475 2.042042643 -0.126882 7 14 SH14002 14002 MT COB intronic 27.584756 179.769583 27.584756 153.184827 90.3847915 1.956095361 -0.179558 7 15 SH5482 5482 snR32 snR32 71 86 36.516408 175.740221 106.1283145 2.025831267 0.165891 7 16 SH14408 14408 MT 21S rRNA 21S rRNA3 293.483916 841.498498 293.483916 549.014582 421.249249 2.62453914 -0.023174 7 17 SH19944 19944 YBL040C spliced 30.565161 141.446976 86.0060685 1.934529096 0.098647 7 18 SH8769 8769 LSR1 / U2 RNA U2 486 498 41.977245 204.279286 123.1282655 2.090357762 -0.063067 7 19 SH8390 8390 snoRNA cluster 5 snR190 37.801271 176.940559 37.801271 140.139288 88.9702795 1.949244955 0.535287 7 20 SH17023 17023 YGR148C_7_788173_787307_INTRON_1_392 intron 31.280148 187.048673 31.280148 156.768525 94.0243365 1.973240277 0.063501 7 21 SH385 385 Asn1 6-20 6 20 31.47854 195.363933 113.4212365 2.054694378 -0.190579 7 22 SH15709 15709 YBR220C_2_663261_662457_INTRON_302_722 intron 38.527135 325.445863 38.527135 287.918728 163.2229315 2.212781174 -0.88485 7 23 SH3753 3753 Val4 5' flank - tRNA3 3 104.625934 1627.740421 866.1831775 2.937609745 -3.092177 7 24 SH175 175 Arg2 5' flank - tRNA7 5' flank 7 34.27944 165.85291 100.066175 2.000287299 0.181306 7 25 SH19824 19824 Negative Control 32.090006 176.301039 104.1955225 2.017849057 -0.004145 7 26 SH5710 5710 snR34 snR34 471 490 29.85671 137.402875 83.6297925 1.922361019 0.071863 7 27 SH13217 13217 MT COX1 COX1-ai4 29.907381 198.648475 29.907381 169.741094 99.8242375 1.999236002 -0.097297 7 28 SH6791 6791 snR50 3' 29.924665 136.631821 83.278243 1.920531554 0.081036 7 29 SH9901 9901 RUF5-1 RUF5-1 311 332 29.912049 145.699309 87.805679 1.943522606 0.030007 7 30 SH4519 4519 U3b (snR17b) U3b 151 168 34.528203 165.84962 100.1889115 2.000819658 0.194844 7 31 SH9533 9533 RUF3 RUF3 51 69 32.152565 145.133285 88.642925 1.947644078 0.183062 7 32 SH9369 9369 RUF1 RUF1 421 438 29.78629 150.533011 90.1596505 1.95501222 -0.005175 7 33 SH17579 17579 YJL191W_10_73786_74610_INTRON_11_418 intron 32.065865 217.705148 32.065865 186.639283 109.352574 2.03882901 -0.09134 7 34 SH5840 5840 snR35 snR35 386 398 73.919531 239.502467 156.710999 2.195099479 0.021693 7 35 SH9860 9860 RUF5-1 RUF5-1 106 127 32.041455 193.792889 112.917172 2.052759993 -0.155721 7 36 SH3370 3370 Thr4 5' flank 29.737266 143.472567 86.6049165 1.937542547 0.029734 7 37 SH2629 2629 Pro3 96-103 + 3' flank 96 34.383941 177.185804 105.7848725 2.024423567 0.079985 7 38 SH20324 20324 YER056C-A spliced 41.363003 189.454158 115.4085805 2.062238099 0.100259 7 39 SH6790 6790 snR50 3' 34.404895 172.773875 103.589385 2.015315255 0.123264 7 40 SH17667 17667 YKL006C-A_11_430270_429836_INTRON_37_177 intron 32.081135 206.760059 32.081135 175.678924 103.8800295 2.016532064 -0.00107 7 41 SH8137 8137 snoRNA cluster 3; snR41/intergenic 32.064993 186.448461 32.064993 155.383468 93.7242305 1.971851883 0.122118 7 42 SH13323 13323 MT COX1 COX1-ai5a 29.726177 183.112911 29.726177 154.386734 92.0564555 1.964054249 -0.029845 7 43 SH1280 1280 Ile2 tRNA-intron/exon 96 108 36.633546 161.513696 99.073621 1.995958036 0.312177 7 44 SH6426 6426 snR45 5' 29.657351 151.81942 90.7383855 1.957791048 -0.021072 7 45 SH10625 10625 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 11 31 29.610923 167.460227 98.535575 1.993593055 -0.103756 7 46 SH217 217 Arg3 5' flank 31.853384 208.392991 120.1231875 2.079626848 -0.288467 7 47 SH16517 16517 YER117W_5_396765_397649_INTRON_43_513 3' exon 31.77616 183.418001 31.77616 152.641841 92.2090005 1.964773315 0.117761 7 48 SH8679 8679 LSR1 / U2 RNA U2 36 53 29.392885 135.322217 82.357551 1.915703424 0.050779 7 49 SH17243 17243 YHR079C-A_8_262554_262193_INTRON_114_199 3' exon 33.84479 224.416281 33.84479 191.571491 112.7081405 2.051955285 -0.070674 7 50 SH6734 6734 snR49 3' 42.794701 195.058199 118.92645 2.075278455 0.054064 7 51 SH19659 19659 SIR1 2.2 33.51773 191.399351 112.4585405 2.050992443 -0.08079 7 52 SH7195 7195 snR64 snR64 41 55 6537.589554 10276.48229 8407.035922 3.924642903 -0.717041 7 53 SH1170 1170 His1 71-72 + 3' flank 71 30.852597 132.408603 81.6306 1.911852989 0.16982 7 54 SH17004 17004 YGR148C_7_788173_787307_INTRON_1_392 5' exon 30.615157 186.921109 30.615157 157.305952 93.9605545 1.972945571 0.016133 7 55 SH9137 9137 snR7 U5 RNA 5' 30.361312 152.535502 91.448407 1.961176145 0.023801 7 56 SH11954 11954 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6656 6671 2962.853585 2700.161611 2831.507598 3.452017731 0.375542 7 57 SH9111 9111 snR14 / U4 RNA 3' 31.992635 161.63121 96.8119225 1.985928844 0.078441 7 58 SH8836 8836 LSR1 / U2 RNA U2 821 837 31.72232 166.233648 98.977984 1.995538604 0.034052 7 59 SH1991 1991 Lys3 5' flank 31.471676 174.868912 103.170294 2.013554668 -0.03223 7 60 SH3490 3490 Tyr1 5' flank - tRNA7 7 35.463425 189.702557 112.582991 2.051472782 -0.007858 7 61 SH225 225 Arg3 5' flank - tRNA2 5' flank 2 31.058919 166.804593 98.931756 1.995335718 -0.00894 7 62 SH10540 10540 RUF8 RUF8 626 642 32.993115 177.433836 105.2134755 2.022071367 0.028161 7 63 SH1940 1940 Lys2 5' flank 30.804843 179.41052 105.1076815 2.021634456 -0.098315 7 64 SH12863 12863 MT COX1 COX1ai1 26.608724 154.718112 26.608724 129.109388 77.859056 1.891309134 -0.117391 7 65 SH16228 16228 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 39.048204 219.01563 39.048204 180.967426 110.007815 2.041423539 0.162936 7 66 SH5784 5784 snR35 snR35 106 125 45.354874 206.107943 125.7314085 2.099443781 -0.034472 7 67 SH4541 4541 U3b (snR17b) U3b 261 278 41.304696 155.379499 98.3420975 1.992739467 0.521281 7 68 SH14537 14537 MT 21S rRNA 21S rRNA3 30.992235 197.740043 30.992235 167.747808 99.3700215 1.997255384 -0.018687 7 69 SH17530 17530 YJL177W_10_90783_91654_INTRON_310_626 5' exon 31.104585 172.366324 31.104585 142.261739 86.683162 1.937934745 0.130481 7 70 SH3093 3093 Ser3 3' flank 31.195728 183.123933 107.1598305 2.030032018 -0.095558 7 71 SH4259 4259 telomerase RNA telomerase 331 348 31.245739 153.675571 92.460655 1.965956966 0.077359 7 72 SH16500 16500 YER117W_5_396765_397649_INTRON_43_513 intron 29.13804 188.942544 29.13804 160.804504 94.971272 1.977592255 -0.104311 7 73 SH20622 20622 YHR101C spliced 31.184153 146.158068 88.6711105 1.947782148 0.113894 7 74 SH21285 21285 YPL143W spliced 33.175109 170.399248 101.7871785 2.007693076 0.092616 7 75 SH7264 7264 snR65 96-100 + 3' 96 33.034207 166.04081 99.5375085 1.997986766 0.110985 7 76 SH7398 7398 snR68 3' 30.809759 171.086633 100.948196 2.004098562 -0.04975 7 77 SH5677 5677 snR34 snR34 306 325 53.50238 200.117103 126.8097415 2.103152617 0.140438 7 78 SH1022 1022 Gly2 3' flank 31.62205 153.163662 92.392856 1.965638392 0.104907 7 79 SH18973 18973 YOR096W_15_505793_506766_INTRON_145_545 intron 40.840574 253.991352 40.840574 214.150778 127.495676 2.105495456 -0.187224 7 80 SH1319 1319 Ile3 5' flank 30.521075 131.820654 81.1708645 1.909400171 0.150535 7 81 SH14596 14596 MT 21S rRNA Sce1 endonuc 30.54381 188.186432 30.54381 158.642622 94.593216 1.975859991 0.004437 7 82 SH9340 9340 RUF1 RUF1 276 290 47.13636 193.890031 120.5131955 2.081034602 0.127501 7 83 SH4480 4480 U3b (snR17b) 5' 29.638777 131.880916 80.7598465 1.907195485 0.088399 7 84 SH5045 5045 snR10 3' 30.760614 162.41088 96.585747 1.984913043 0.000098 7 85 SH17143 17143 YHR010W_8_126513_127484_INTRON_32_592 intron 37.100274 185.011224 37.100274 148.91095 93.005612 1.968509155 0.438612 7 86 SH18840 18840 YNL302C_14_62942_61957_INTRON_21_571 3' exon 30.942177 196.340918 30.942177 166.398741 98.670459 1.994187148 -0.013505 7 87 SH20238 20238 YDR305C spliced 28.929942 164.992093 96.9610175 1.986597164 -0.140011 7 88 SH13030 13030 MT COX1 COX1ai2 31.084596 184.70474 31.084596 154.620144 92.85237 1.967792993 0.061664 7 89 SH14843 14843 MT tRNA Asp tRNA / 3' 29.032805 171.618931 29.032805 143.586126 86.3094655 1.936058427 -0.021376 7 90 SH9798 9798 RUF4 RUF4 766 782 37.472109 190.037088 113.7545985 2.055968962 0.027283 7 91 SH10923 10923 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1501 1519 23869.62741 14620.64578 19245.1366 4.284320998 0.398414 7 92 SH2521 2521 Pro1 3' flank 31.191026 180.647864 105.919445 2.024975696 -0.082008 7 93 SH10223 10223 RUF6 RUF6 961 973 405.959739 601.31184 503.6357895 2.702116584 0.219669 7 94 SH12642 12642 MT_15S MT_15S 29.117921 194.602668 29.117921 166.484747 97.801334 1.990344779 -0.133866 7 95 SH43 43 Ala1 3' flank 31.253813 182.756889 107.005351 2.029405496 -0.090042 7 96 SH5987 5987 snR36 3' 31.301435 176.944871 104.123153 2.017547311 -0.05436 7 97 SH18088 18088 YLR344W_12_819312_820142_INTRON_20_466 3' exon 29.251139 173.081785 29.251139 144.830646 87.0408925 1.939723336 -0.012322 7 98 SH16507 16507 YER117W_5_396765_397649_INTRON_43_513 intron 29.323702 161.163191 29.323702 132.839489 81.0815955 1.908922286 0.060246 7 99 SH13850 13850 MT COB Cytbi2 29.405742 177.373001 29.405742 148.967259 89.1865005 1.950299123 -0.02339 7 100 SH9577 9577 RUF3 RUF3 271 290 29.492475 176.398267 102.945371 2.012606823 -0.162499 7 101 SH8944 8944 snR17a / U3a U3a 6 23 29.578867 162.151958 95.8654125 1.981661945 -0.079909 7 102 SH7366 7366 snR68 snR68 51 70 29.660277 149.255347 89.457812 1.951618272 -0.007069 7 103 SH12902 12902 MT COX1 Exon2 29.7328 183.712955 29.7328 154.980155 92.3564775 1.96546736 -0.032491 7 104 SH19029 19029 YOR182C_15_678792_678190_INTRON_4_414 intron/exon 46.172546 248.457414 46.172546 203.284868 124.728707 2.09596642 0.007913 8 2 SH21118 21118 YNL096C spliced 28.960464 184.279021 106.6197425 2.027837629 -0.240934 8 3 SH9230 9230 snR6 / U6 RNA U6 21 38 29.034149 146.135782 87.5849655 1.942429563 -0.034995 8 4 SH13087 13087 MT COX1 COX1ai3 46.011311 263.082428 46.011311 218.071117 132.041214 2.120709509 -0.152104 8 5 SH18960 18960 YOL127W_15_80347_81189_INTRON_14_427 intron 31.212203 167.388439 31.212203 137.176236 84.1942195 1.925282275 0.166658 8 6 SH13207 13207 MT COX1 COX1-ai4 27.000913 165.197724 27.000913 139.196811 83.098862 1.919595076 -0.149645 8 7 SH9660 9660 RUF4 RUF4 76 94 29.094063 174.849113 101.971588 2.008479183 -0.178962 8 8 SH12369 12369 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.289383 202.081663 33.289383 169.79228 101.5408315 2.006640715 0.10267 8 9 SH11739 11739 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5581 5599 39.613993 167.256993 103.435493 2.014669589 0.344701 8 10 SH19988 19988 YBL092W spliced 46.001813 195.667802 120.8348075 2.082192055 0.091482 8 11 SH20612 20612 YHR079C-A spliced 35.545331 203.824129 119.68473 2.078038744 -0.1626 8 12 SH16200 16200 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 35.712862 219.857743 35.712862 185.144881 110.4288715 2.043082634 0.050064 8 13 SH11673 11673 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5251 5269 16361.04916 9063.969678 12712.50942 4.104231288 0.66977 8 14 SH12382 12382 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.921254 215.288056 31.921254 184.366802 108.144028 2.034002542 -0.076083 8 15 SH1813 1813 Leu8 91-101 + 3' flank 91 30.030327 132.503055 81.266691 1.909912577 0.112372 8 16 SH10851 10851 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1141 1161 688.983409 1153.883983 921.433696 2.96446409 -0.182835 8 17 SH18370 18370 YMR079W_13_424988_426058_INTRON_10_165 intron 28.357999 192.97672 28.357999 165.618721 96.98836 1.986719616 -0.184522 8 18 SH12685 12685 MT tRNA Trp 3' 30.813086 169.442043 30.813086 139.628957 85.2210215 1.930546736 0.125743 8 19 SH3898 3898 RNase MRP 5' 31.042737 185.087059 108.064898 2.033684648 -0.116093 8 20 SH5634 5634 snR34 snR34 91 108 33.510062 166.597598 100.05383 2.000233718 0.13432 8 21 SH14249 14249 MT tRNA Ser 3' 31.4455 193.075088 31.4455 162.629588 97.037544 1.986939796 0.039938 8 22 SH16055 16055 YDL191W_4_117665_118518_INTRON_4_494 3' exon 40.766722 246.541287 40.766722 206.774565 123.7706435 2.092617649 -0.108373 8 23 SH3923 3923 RNase MRP RNaseMRP 31 48 47.880824 1245.876329 646.8785765 2.810822768 -3.532342 8 24 SH17317 17317 YHR203C_8_505526_504472_INTRON_15_283 3' exon 34.227697 243.633622 34.227697 210.405925 122.316811 2.08748615 -0.258541 8 25 SH20268 20268 YDR424C spliced 29.724255 168.114314 98.9192845 1.995280966 -0.098995 8 26 SH4983 4983 snR10 5' 29.799538 136.320753 83.0601455 1.919392688 0.073988 8 27 SH14996 14996 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.840095 181.590301 29.840095 152.750206 91.2951505 1.960447709 -0.013275 8 28 SH18020 18020 YLR306W_12_744151_744851_INTRON_4_137 intron 32.166445 202.160247 32.166445 170.993802 101.5801235 2.006808737 0.031358 8 29 SH3224 3224 Thr1 5' flank 39.105964 181.123686 110.114825 2.041845793 0.162102 8 30 SH8634 8634 snR19 / U1 RNA 666-668 + 3' 666 30.928085 179.072762 105.0004235 2.021191051 -0.088936 8 31 SH4660 4660 snR3 3' 29.711332 127.555482 78.633407 1.895607093 0.119536 8 32 SH14982 14982 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 31.959575 215.540585 31.959575 184.58101 108.2702925 2.03450931 -0.076605 8 33 SH3767 3767 Val4 tRNA 61 73 31.9087 157.402316 94.655508 1.976145891 0.100466 8 34 SH10738 10738 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 576 593 43.400723 180.979183 112.189953 2.049953966 0.233704 8 35 SH2315 2315 Phe3 5' flank 34.15941 182.898369 108.5288895 2.035545359 0.018591 8 36 SH19899 19899 snR17B spliced 29.55551 155.681778 92.618644 1.966698418 -0.048562 8 37 SH10082 10082 RUF6 RUF6 256 278 36.45897 198.628257 117.5436135 2.070199038 -0.088406 8 38 SH18579 18579 YNL044W_14_545264_545873_INTRON_25_103 intron 29.555668 155.587792 29.555668 127.032124 78.293896 1.893727905 0.112074 8 39 SH17386 17386 YIL069C_9_232366_231550_INTRON_4_412 intron 36.449284 218.681809 36.449284 183.232525 109.8409045 2.040764101 0.087117 8 40 SH4231 4231 telomerase RNA telomerase 191 207 34.12984 167.055839 100.5928395 2.002567067 0.165788 8 41 SH14065 14065 MT COB Cytbi4 29.511469 206.806087 29.511469 178.294618 103.9030435 2.016628269 -0.172159 8 42 SH2554 2554 Pro2 tRNA 6 22 245.291146 503.060974 374.17606 2.573075998 -0.09035 8 43 SH10710 10710 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 436 449 68.596812 240.110974 154.353893 2.188517587 -0.047789 8 44 SH13428 13428 MT COX1 intronic 29.426532 183.144222 29.426532 154.71769 92.072111 1.964128101 -0.052606 8 45 SH15764 15764 YCR031C_3_178212_177492_INTRON_8_314 3' exon 31.678957 193.030296 31.678957 162.351339 97.015148 1.986839551 0.055505 8 46 SH20733 20733 YJL189W spliced 36.206816 198.697363 117.4520895 2.069860747 -0.094074 8 47 SH1528 1528 Leu3 111-114 + 3' flank 111 29.299916 129.974376 79.637146 1.901115688 0.075529 8 48 SH12292 12292 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.060778 200.108798 36.060778 165.04802 100.554399 2.002401075 0.256772 8 49 SH13956 13956 MT COB Cytbi3 31.41421 234.910716 31.41421 204.496506 117.955358 2.071717673 -0.270124 8 50 SH18898 18898 YOL120C_15_94401_93394_INTRON_113_559 intron 31.296313 175.623118 31.296313 145.326805 88.311559 1.946017552 0.125966 8 51 SH14547 14547 MT 21S rRNA 21S rRNA3 31.150198 232.265078 31.150198 202.11488 116.632539 2.06681973 -0.260466 8 52 SH13419 13419 MT COX1 intronic 30.974063 174.589911 30.974063 144.615848 87.7949555 1.943469563 0.108459 8 53 SH6634 6634 snR48 5' - 16 -4 16 30.768489 151.444588 91.1065385 1.959549546 0.057263 8 54 SH18377 18377 YMR116C_13_500687_499455_INTRON_538_810 exon/intron 30.537167 195.762335 30.537167 166.225168 98.3811675 1.992911972 -0.037075 8 55 SH12207 12207 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7921 7946 4307.571925 4684.703791 4496.137858 3.652839619 -0.00805 8 56 SH8082 8082 snoRNA cluster 2 3' 32.196415 187.547389 32.196415 156.350974 94.2736945 1.974390527 0.124056 8 57 SH7943 7943 snoRNA cluster1 3' 31.919861 186.974209 31.919861 156.054348 93.9871045 1.97306827 0.109214 8 58 SH20193 20193 YDR005C spliced 33.789962 199.711859 116.7509105 2.067260276 -0.154041 8 59 SH10966 10966 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1716 1736 86.791235 239.540691 163.165963 2.212629568 0.165225 8 60 SH13193 13193 MT COX1 Exon4 31.204846 173.257005 31.204846 143.052159 87.1285025 1.94016025 0.132671 8 61 SH9198 9198 snR7 U5 RNA 3' 32.075749 194.466414 113.2710815 2.054119047 -0.160294 8 62 SH2863 2863 Pro7 3' flank 68.539923 233.910464 151.2251935 2.179624149 0.004665 8 63 SH11216 11216 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2966 2984 57.885052 244.812459 151.3487555 2.179978854 -0.22952 8 64 SH10679 10679 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 281 296 1251.13126 1754.157252 1502.644256 3.176856176 -0.082842 8 65 SH12744 12744 MT COX1 COX1ai1 61.984434 271.935337 61.984434 210.950903 136.4676685 2.135029772 0.134961 8 66 SH15097 15097 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 32.890432 209.156338 32.890432 177.265906 105.078169 2.021512497 0.026024 8 67 SH230 230 Arg3 6-22 6 22 28.812859 147.593801 88.20333 1.945484982 -0.058845 8 68 SH13245 13245 MT COX1 COX1-ai4 28.902229 185.466616 28.902229 157.564387 93.233308 1.969571094 -0.104685 8 69 SH3104 3104 Ser4 5' flank 33.174944 152.487065 92.8310045 1.96769305 0.205449 8 70 SH7912 7912 snoRNA cluster1 intergenic/snR72 29.050043 175.182601 29.050043 147.132558 88.0913005 1.944933022 -0.03914 8 71 SH18224 18224 YML026C_13_223828_222987_INTRON_48_448 intron 31.170874 210.149399 31.170874 179.978525 105.5746995 2.023559854 -0.079445 8 72 SH21928 21928 copy of SH20403 43.749633 225.710604 134.7301185 2.129464692 -0.261784 8 73 SH7860 7860 snoRNA cluster1 intergenic 31.060138 189.360254 31.060138 159.300116 95.180127 1.97854628 0.035875 8 74 SH5997 5997 snR37 5' 33.021387 183.206429 108.113908 2.033881566 -0.024838 8 75 SH11186 11186 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2816 2834 34.941265 166.047632 100.4944485 2.002142071 0.208803 8 76 SH3610 3610 Val1 tRNA 46 58 38.909755 190.105866 114.5078105 2.058835111 0.053131 8 77 SH1391 1391 Leu1 tRNA-exon/intron 26 42 36.687737 207.295515 121.991626 2.08633002 -0.177393 8 78 SH15096 15096 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 30.42253 181.535706 30.42253 152.113176 91.267853 1.960317834 0.030227 8 79 SH15136 15136 MT tRNA Phe 3' 30.371972 175.579597 30.371972 146.207625 88.2897985 1.945910526 0.058853 8 80 SH3127 3127 Ser4 tRNA 41 58 32.411276 202.682325 117.5468005 2.070210813 -0.217656 8 81 SH14704 14704 MT tRNA thr2 tRNA 48.876205 246.18948 48.876205 198.313275 123.59474 2.091999988 0.099783 8 82 SH17118 17118 YHR010W_8_126513_127484_INTRON_32_592 intron 36.622968 241.986303 36.622968 206.363335 121.4931515 2.084551798 -0.168434 8 83 SH1356 1356 Ile3 3' flank 32.602268 187.99537 110.298819 2.042570862 -0.083683 8 84 SH4422 4422 telomerase RNA telomerase 1146 1167 30.636493 159.087369 94.861931 1.977091961 0.008457 8 85 SH19085 19085 YOR293W_15_867094_867848_INTRON_53_489 intron 28.659099 173.115976 28.659099 145.456877 87.057988 1.939808626 -0.058749 8 86 SH9607 9607 RUF3 421-431 + 3' 421 28.737588 146.922952 87.83027 1.943644218 -0.060804 8 87 SH14965 14965 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 30.883482 201.450801 30.883482 171.567319 101.2254005 2.005289504 -0.048132 8 88 SH9948 9948 RUF5-1 RUF5-1 546 562 30.935747 141.8691 86.4024235 1.936525924 0.121424 8 89 SH13900 13900 MT COB intronic/exon3 28.883545 164.162241 28.883545 136.278696 82.5811205 1.916880771 0.008474 8 90 SH6542 6542 snR46 3' 28.901729 156.823107 92.862418 1.967839988 -0.100901 8 91 SH21593 21593 copy of SH6254 33.089113 154.573318 93.8312155 1.972347342 0.1868 8 92 SH9999 9999 RUF5-1 3' 31.005393 167.483466 99.2444295 1.99670614 -0.016291 8 93 SH19083 19083 YOR293W_15_867094_867848_INTRON_53_489 intron 35.198877 218.558912 35.198877 184.360035 109.779456 2.040521074 0.041068 8 94 SH8356 8356 snoRNA cluster4 3' 35.222872 206.439185 35.222872 172.216313 103.7195925 2.015860802 0.156866 8 95 SH16821 16821 YGL178W_7_167356_170575_INTRON_4_643 intron 35.265594 187.059128 35.265594 152.793534 94.029564 1.973264422 0.317652 8 96 SH1883 1883 Leu9 3' flank 35.330723 165.725995 100.528359 2.002288593 0.225353 8 97 SH4177 4177 telomerase RNA 5' 33.313005 196.512094 114.9125495 2.06036746 -0.132614 8 98 SH11569 11569 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4731 4748 23296.83568 21985.88781 22641.36175 4.354902544 -0.281472 8 99 SH18502 18502 YMR194W_13_651144_651909_INTRON_17_479 intron 33.530015 215.660559 33.530015 183.130544 108.3302795 2.034749864 -0.005828 8 100 SH8101 8101 snoRNA cluster 3; 5' 42.183996 254.301308 42.183996 213.117312 127.650654 2.106023044 -0.155773 8 101 SH15890 15890 YDL082W_4_308423_309387_INTRON_5_369 intron 31.639106 202.009323 31.639106 171.370217 101.5046615 2.006485987 -0.001777 8 102 SH12306 12306 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.748416 214.617237 31.748416 183.868821 107.8086185 2.032653481 -0.078022 8 103 SH10230 10230 RUF6 RUF6 996 1015 29.689767 145.058755 87.374261 1.941383516 0.017798 8 104 SH20229 20229 YDR129C spliced 29.764275 169.672394 99.7183345 1.998775016 -0.105853 9 2 SH20337 20337 YER074W-A spliced 65.189401 201.635091 133.412246 2.125195696 0.269264 9 3 SH295 295 Arg4 71-72 + 3' flank 71 3' flank 26.956581 127.805312 77.3809465 1.888634038 -0.082265 9 4 SH8653 8653 LSR1 / U2 RNA 5' 31.234947 172.077787 101.656367 2.007134585 -0.029997 9 5 SH3651 3651 Val2 5' flank - tRNA12 12 54.597914 191.043732 122.820823 2.089272003 0.256356 9 6 SH12912 12912 MT COX1 COX1ai2 31.277986 195.815888 31.277986 165.537902 98.407944 1.993030158 0.011944 9 7 SH15863 15863 YDL079C_4_314747_312950_INTRON_413_704 intron 1669.388097 4565.395321 1669.388097 2897.007224 2283.197661 3.358543511 -0.490828 9 8 SH9202 9202 snR7 U5 RNA 3' 29.164756 134.017208 81.590982 1.91164216 0.041921 9 9 SH982 982 Gly2 5' flank 31.28436 152.624939 91.9546495 1.963573693 0.08548 9 10 SH20202 20202 YDR025W spliced 778.532844 898.394431 838.4636375 2.923484233 0.376956 9 11 SH19529 19529 CBP1 1.2 29.29903 137.624358 83.461694 1.921487195 0.030897 9 12 SH17350 17350 YIL018W_9_316766_317930_INTRON_5_404 intron 29.429956 200.168603 29.429956 171.738647 100.5843015 2.002530204 -0.139267 9 13 SH16563 16563 YER133W_5_432491_433954_INTRON_178_702 intron 89.880998 364.247637 89.880998 275.366639 182.6238185 2.261557419 -0.073471 9 14 SH11394 11394 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3856 3869 39041.89636 32503.38169 35772.63903 4.55355098 -0.232425 9 15 SH1163 1163 His1 tRNA 36 48 34.409746 178.807873 106.6088095 2.027793094 0.065506 9 16 SH18084 18084 YLR344W_12_819312_820142_INTRON_20_466 intron 54.468212 248.990899 54.468212 195.522687 124.9954495 2.096894203 0.203787 9 17 SH1307 1307 Ile3 5' flank 30.559769 129.963217 80.261493 1.904507234 0.164262 9 18 SH13508 13508 MT COX1 intronic 30.79039 218.490172 30.79039 188.699782 109.745086 2.040385083 -0.158491 9 19 SH5668 5668 snR34 snR34 261 280 31.00313 146.899421 88.9512755 1.94915218 0.097714 9 20 SH10087 10087 RUF6 RUF6 281 298 31.198045 148.014567 89.606306 1.952338574 0.104594 9 21 SH3174 3174 Ser5 5' flank - tRNA8 8 31.377044 185.565282 108.471163 2.035314297 -0.107616 9 22 SH92 92 Ala2 3' flank 31.541493 189.160031 110.350762 2.042775336 -0.13373 9 23 SH14367 14367 MT ORF9 and ORF10 (hypothetical) ORF9 / intergenic 29.403889 171.430403 29.403889 143.026514 86.2152015 1.935583848 0.008416 9 24 SH8821 8821 LSR1 / U2 RNA U2 746 758 36.416278 198.462186 117.439232 2.069813202 -0.087413 9 25 SH14652 14652 MT 21S rRNA 21S rRNA4 31.922669 177.29071 31.922669 146.368041 89.145355 1.950098719 0.161307 9 26 SH14645 14645 MT 21S rRNA intronic 31.992708 220.375953 31.992708 189.383245 110.6879765 2.044100448 -0.118705 9 27 SH14423 14423 MT 21S rRNA 21S rRNA3 32.024911 184.924718 32.024911 153.899807 92.962359 1.968307136 0.127295 9 28 SH4457 4457 telomerase RNA 3' 32.018854 146.383108 89.200981 1.950369631 0.167467 9 29 SH5262 5262 snR30 snR30 161 178 31.979604 183.344893 107.6622485 2.032063446 -0.064516 9 30 SH10553 10553 RUF8 RUF8 691 708 31.917189 135.626779 83.771984 1.923098801 0.222552 9 31 SH19265 19265 YPL143W_16_282121_282969_INTRON_20_544 intron 31.844503 233.226517 31.844503 202.382014 117.1132585 2.068606065 -0.236288 9 32 SH14346 14346 MT VAR1 includes 5’ processing site 3' 50.167981 233.435039 50.167981 184.267058 117.2175195 2.068992527 0.281643 9 33 SH17830 17830 YKR094C_11_618384_617630_INTRON_9_376 exon/intron 31.716406 224.745565 31.716406 194.029159 112.8727825 2.052589231 -0.169992 9 34 SH18878 18878 YNR053C_14_723108_721117_INTRON_811_1341 intron 29.390096 168.055014 29.390096 139.664918 84.527507 1.92699806 0.025963 9 35 SH1130 1130 Gly4 3' flank 31.650977 166.832554 99.2417655 1.996694482 0.026189 9 36 SH7580 7580 snR189 5' 29.355056 125.096363 77.2257095 1.887761907 0.110792 9 37 SH7023 7023 snR62 5' 31.629139 179.166159 105.397649 2.022830924 -0.047565 9 38 SH7882 7882 snoRNA cluster1 snR73 31.618401 203.540538 31.618401 172.922137 102.270269 2.009749398 -0.01216 9 39 SH12845 12845 MT COX1 COX1ai1 31.601811 211.827412 31.601811 181.225601 106.413706 2.026997568 -0.060793 9 40 SH11237 11237 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3071 3087 28299.80707 28917.54047 28608.67377 4.456497725 -0.464495 9 41 SH1205 1205 Ile1 5' flank - tRNA3 3 33.830228 198.256338 116.043283 2.064620007 -0.137267 9 42 SH17763 17763 YKL157W_11_154993_158183_INTRON_282_664 intron 31.523743 215.455315 31.523743 184.931572 108.2276575 2.034338259 -0.096255 9 43 SH4488 4488 U3b (snR17b) 5' - 13 13 33.7715 164.724409 99.2479545 1.996721565 0.160336 9 44 SH449 449 Asp1 66-71 + 3' flank 66 3' flank 31.472132 145.348846 88.410489 1.946503793 0.137469 9 45 SH12159 12159 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7681 7699 33.717925 194.367239 114.042582 2.057067041 -0.099622 9 46 SH7745 7745 snoRNA cluster1 intergenic 29.150995 172.723949 29.150995 144.572954 86.8619745 1.938829697 -0.018157 9 47 SH20994 20994 YML073C spliced 33.646448 193.357304 113.501876 2.05500304 -0.093373 9 48 SH21784 21784 copy of SH14439 31.328258 141.327635 86.3279465 1.93615141 0.150688 9 49 SH11967 11967 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6721 6738 30250.40101 33735.85293 31993.12697 4.50505669 -0.622684 9 50 SH5571 5571 snR33 snR33 141 158 31.159157 133.273019 82.216088 1.914956808 0.185572 9 51 SH883 883 Glu3 5' flank 33.273329 193.265062 113.2691955 2.054111816 -0.105926 9 52 SH13026 13026 MT COX1 COX1ai2 28.644866 177.767603 28.644866 150.122737 89.3838015 1.951258821 -0.0844 9 53 SH4039 4039 SRP RNA SRP RNA 86 102 32.896942 181.300842 107.098892 2.029784978 -0.011718 9 54 SH3698 3698 Val3 5' flank 32.661499 158.066152 95.3638255 1.979383664 0.139781 9 55 SH12074 12074 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7256 7273 32.40457 174.612372 103.508471 2.014975893 0.023869 9 56 SH6598 6598 snR47 96-99 + 3' 96 47.326057 212.48225 129.9041535 2.113623037 -0.075671 9 57 SH18065 18065 YLR344W_12_819312_820142_INTRON_20_466 intron 34.021794 253.948923 34.021794 220.927129 127.4744615 2.105423186 -0.369079 9 58 SH7461 7461 snR71 5' 31.624975 162.045238 96.8351065 1.986032835 0.054234 9 59 SH4794 4794 snR5 snR5 141 162 29.286593 146.319089 87.802841 1.943508568 -0.017739 9 60 SH4062 4062 SRP RNA SRP RNA 201 218 37.521686 203.123747 120.3227165 2.080347628 -0.117445 9 61 SH19427 19427 YPR132W_16_794960_795762_INTRON_66_430 intron 31.053425 196.689231 31.053425 166.635806 98.8446155 1.994953016 -0.008242 9 62 SH8526 8526 snR19 / U1 RNA U1 126 142 35.107194 160.296999 97.7020965 1.989903883 0.260529 9 63 SH21517 21517 copy of SH3112 30.861319 148.264975 89.563147 1.952129345 0.080704 9 64 SH11457 11457 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4171 4184 42.265537 202.40993 122.3377335 2.08756043 -0.03795 9 65 SH18648 18648 YNL112W_14_413636_416278_INTRON_1274_2275 intron 37.068183 218.866331 37.068183 182.798148 109.9331655 2.041128734 0.104198 9 66 SH13231 13231 MT COX1 COX1-ai4 35.034042 249.303852 35.034042 215.26981 125.151926 2.097437537 -0.29184 9 67 SH6786 6786 snR50 3' 28.855452 137.937009 83.3962305 1.921146421 -0.003001 9 68 SH20643 20643 YHR203C spliced 58.2588 223.897508 141.078154 2.149459768 -0.038742 9 69 SH15696 15696 YBR220C_2_663261_662457_INTRON_302_722 intron 33.173672 238.370709 33.173672 206.197037 119.6853545 2.07804101 -0.236662 9 70 SH7466 7466 snR71 5' 31.119149 157.829641 94.474395 1.975314119 0.047327 9 71 SH13783 13783 MT COB intronic 29.020962 184.351589 29.020962 156.330627 92.6757945 1.966966318 -0.089809 9 72 SH2921 2921 Pro8 3' flank 26.881067 138.381252 82.6311595 1.917143847 -0.153924 9 73 SH4321 4321 telomerase RNA telomerase 641 660 28.874418 129.117018 78.995718 1.897603551 0.050623 9 74 SH17066 17066 YGR214W_7_920570_921783_INTRON_91_545 intron 30.818424 174.134416 30.818424 144.315992 87.567208 1.942341503 0.099686 9 75 SH6655 6655 snR48 101-113 + 3' 101 32.725515 188.380835 110.553175 2.04357122 -0.082619 9 76 SH12954 12954 MT COX1 COX1ai2 30.505614 178.825366 30.505614 149.319752 89.912683 1.953820957 0.050902 9 77 SH16199 16199 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 34.467067 201.499225 34.467067 168.032158 101.2496125 2.00539337 0.172386 9 78 SH7838 7838 snoRNA cluster1 snR74 34.360417 229.062548 34.360417 195.702131 115.031274 2.06081593 -0.098025 9 79 SH6261 6261 snR42 snR42 86 103 32.267041 162.629622 97.4483315 1.988774408 0.08815 9 80 SH1082 1082 Gly3 3' flank 34.300087 176.226728 105.2634075 2.022277425 0.086218 9 81 SH11716 11716 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5466 5481 44.557374 166.121746 105.33956 2.0225915 0.442731 9 82 SH20254 20254 YDR381W spliced 30.325692 145.745457 88.0355745 1.944658203 0.058253 9 83 SH21559 21559 copy of SH4989 30.408138 136.635757 83.5219475 1.921800612 0.114768 9 84 SH17819 17819 YKR057W_11_551293_551878_INTRON_25_346 intron 32.552192 229.860994 32.552192 198.308802 115.430497 2.062320566 -0.175648 9 85 SH9164 9164 snR7 U5 RNA U5 91 107 34.70551 172.953205 103.8293575 2.016320167 0.131935 9 86 SH11323 11323 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3501 3518 53334.40063 34777.94091 44056.17077 4.644006747 0.065396 9 87 SH10893 10893 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1351 1370 24731.0952 17789.11996 21260.10758 4.327565458 0.132571 9 88 SH19660 19660 SIR1 2.2 369.330935 462.79928 416.0651075 2.619161296 0.541053 9 89 SH11714 11714 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5456 5469 247.417985 311.284955 279.35147 2.446150961 0.751726 9 90 SH4597 4597 snR3 5' 43.247422 226.719037 134.9832295 2.130279815 -0.27915 9 91 SH12486 12486 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 30.782128 167.496507 30.782128 137.714379 84.2482535 1.925560907 0.134385 9 92 SH21712 21712 copy of SH11292 32.85873 163.230631 98.0446805 1.991424036 0.118371 9 93 SH15173 15173 MT COX3 5' 30.792846 170.693058 30.792846 140.900212 85.846529 1.93372274 0.117296 9 94 SH15239 15239 MT tRNA fMet 5' 30.815301 170.32963 30.815301 140.514329 85.664815 1.932802481 0.120968 9 95 SH11166 11166 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2716 2736 32.936367 123.314649 78.125508 1.892792854 0.362916 9 96 SH1195 1195 Ile1 5' flank 33.004854 168.498813 100.7518335 2.003252958 0.094393 9 97 SH10872 10872 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1246 1262 35045.04258 34798.09615 34921.56937 4.543093753 -0.480915 9 98 SH13552 13552 MT COX1 intronic 37.413711 225.819781 37.413711 189.40607 113.4098905 2.054650931 0.033424 9 99 SH14055 14055 MT COB Cytbi4 31.238328 169.127644 31.238328 138.889316 85.063822 1.929744892 0.158749 9 100 SH6471 6471 snR45 3' 31.369645 151.490449 91.430047 1.961088943 0.097174 9 101 SH3844 3844 RNaseP RNaseP 186 201 31.502057 160.195833 95.848945 1.981587337 0.058616 9 102 SH18260 18260 YML056C_13_164176_162194_INTRON_461_868 intron 29.490814 162.102968 29.490814 133.612154 81.551484 1.911431868 0.067695 9 103 SH14176 14176 MT COB intronic 29.594755 175.616838 29.594755 147.022083 88.308419 1.94600211 0.000555 9 104 SH10809 10809 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 931 948 172.135365 344.359591 258.247478 2.412036089 0.17118 10 2 SH9572 9572 RUF3 RUF3 246 262 46.019678 197.003225 121.5114515 2.084617209 0.076426 10 3 SH20727 20727 YJL177W spliced 43.967454 201.256872 122.612163 2.088533554 -0.000627 10 4 SH14477 14477 MT 21S rRNA 21S rRNA3 27.064357 183.064413 27.064357 157.000056 92.0322065 1.963939834 -0.238842 10 5 SH7505 7505 snR71 3' 27.105561 127.117526 77.1115435 1.887119396 -0.066458 10 6 SH15843 15843 YDL075W_4_322225_322987_INTRON_58_478 intron 29.242251 223.506885 29.242251 195.264634 112.2534425 2.050199668 -0.281664 10 7 SH4293 4293 telomerase RNA telomerase 501 519 29.253083 157.191768 93.2224255 1.969520398 -0.077726 10 8 SH20348 20348 YER102W spliced 35.610944 195.564002 115.587473 2.062910769 -0.071196 10 9 SH9719 9719 RUF4 RUF4 371 387 29.282923 153.308143 91.295533 1.960449528 -0.055344 10 10 SH11018 11018 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1976 1994 146.853011 293.386556 220.1197835 2.342659077 0.295685 10 11 SH3339 3339 Thr3 tRNA 41 58 63.540088 195.729103 129.6345955 2.112720917 0.313037 10 12 SH21221 21221 YOR182C spliced 35.937711 191.968257 113.952984 2.056725702 -0.024317 10 13 SH6964 6964 snR60 5' 31.843915 185.2133 108.5286075 2.035544231 -0.086718 10 14 SH15101 15101 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 32.055105 172.730284 32.055105 141.675179 86.865142 1.938845534 0.196297 10 15 SH631 631 Gln2 5' flank 27.940885 142.157067 85.048976 1.929669089 -0.094318 10 16 SH8628 8628 snR19 / U1 RNA U1 636 652 45.697275 199.384228 122.5407515 2.088280539 0.044929 10 17 SH13616 13616 MT ATP6 5' 30.5542 178.933473 30.5542 149.379273 89.9667365 1.954081967 0.053882 10 18 SH14169 14169 MT COB intronic 30.758319 213.033224 30.758319 183.274905 107.016612 2.029451198 -0.122792 10 19 SH13762 13762 MT COB intronic 28.713385 163.73539 28.713385 136.022005 82.367695 1.915756913 -0.002501 10 20 SH103 103 Ala2 3' flank 31.117093 147.255309 89.186201 1.950297665 0.103368 10 21 SH5006 5006 snR10 snR10 61 73 169.893625 276.978777 223.436201 2.349153539 0.553545 10 22 SH4116 4116 SRP RNA SRP RNA 471 490 31.41827 177.257053 104.3376615 2.018441099 -0.049186 10 23 SH16780 16780 YGL103W_7_310965_311925_INTRON_50_560 intron 36.10537 219.389799 36.10537 184.284429 110.1948995 2.042161493 0.067943 10 24 SH15420 15420 YBL059W_2_110555_111205_INTRON_287_355 3' exon 31.66037 195.654541 31.66037 164.994171 98.3272705 1.992673984 0.038002 10 25 SH8897 8897 LSR1 / U2 RNA U2 1126 1142 31.747743 138.931175 85.339459 1.931149885 0.192146 10 26 SH9653 9653 RUF4 RUF4 41 57 30.656334 200.314731 115.4855325 2.062527581 -0.264514 10 27 SH14057 14057 MT COB Cytbi4 31.824101 208.083342 31.824101 177.259241 104.541671 2.019289438 -0.025206 10 28 SH2988 2988 Ser2 5' flank 30.66101 142.820053 86.7405315 1.938222079 0.0975 10 29 SH8562 8562 snR19 / U1 RNA U1 306 321 31.762821 147.203118 89.4829695 1.951740388 0.14628 10 30 SH17742 17742 YKL156W_11_158616_159214_INTRON_4_353 3' exon 43.153599 237.341044 43.153599 195.187445 119.170522 2.076168842 0.057562 10 31 SH18253 18253 YML034W_13_209525_212155_INTRON_1921_2046 intron/exon 29.341255 165.209516 29.341255 136.868261 83.104758 1.919625889 0.038223 10 32 SH9894 9894 RUF5-1 RUF5-1 276 291 33.830453 179.789135 106.809794 2.028611077 0.035932 10 33 SH2269 2269 Phe2 5' flank 31.49497 147.027305 89.2611375 1.950662417 0.129673 10 34 SH13441 13441 MT COX1 intronic 31.453731 193.590762 31.453731 163.137031 97.295381 1.988092223 0.037262 10 35 SH21589 21589 copy of SH6250 31.427463 135.831595 83.629529 1.922359651 0.18881 10 36 SH19156 19156 YPL075W_16_412249_415357_INTRON_9_759 intron 31.411146 221.987493 31.411146 191.576347 111.4937465 2.047250509 -0.16011 10 37 SH4352 4352 telomerase RNA telomerase 796 817 31.398321 193.657427 112.527874 2.051260114 -0.178831 10 38 SH6948 6948 snR58 3' 31.383506 166.39657 98.890038 1.995152544 0.012983 10 39 SH1665 1665 Leu5 3' flank 31.363908 125.296271 78.3300895 1.893928623 0.247464 10 40 SH6546 6546 snR46 3' 31.339845 149.421864 90.3808545 1.956076443 0.106339 10 41 SH3818 3818 RNaseP RNaseP 56 68 13397.13409 5948.601667 9672.867877 3.985555256 1.081357 10 42 SH4996 4996 snR10 snR10 11 27 40.33442 190.76271 115.548565 2.062764556 0.069417 10 43 SH15800 15800 YDL061C_4_341182_340627_INTRON_1_408 intron 31.267651 191.356646 31.267651 161.088995 96.178323 1.9830772 0.039005 10 44 SH11038 11038 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2076 2091 142.958065 286.289261 214.623663 2.331677603 0.313228 10 45 SH3547 3547 Tyr2 tRNA 6 20 51.578033 207.514945 129.546489 2.112425647 0.03547 10 46 SH16277 16277 YDR447C_4_1355542_1354818_INTRON_4_317 intron 31.214129 201.004906 31.214129 170.790777 101.002453 2.004331921 -0.023616 10 47 SH4475 4475 U3b (snR17b) 5' 31.188155 178.664978 104.9265665 2.020885462 -0.070966 10 48 SH616 616 Gln1 3' flank 31.149658 193.171182 112.16042 2.049839627 -0.184114 10 49 SH21187 21187 YOL047C spliced 33.337922 171.693396 102.515659 2.010790208 0.094081 10 50 SH2313 2313 Phe2 3' flank 31.011734 191.828832 111.420283 2.046964257 -0.177662 10 51 SH10830 10830 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1036 1054 250.732774 481.466712 366.099743 2.563599424 0.010175 10 52 SH2737 2737 Pro5 tRNA-intron/exon 66 78 145.133447 311.047388 228.0904175 2.35810704 0.175283 10 53 SH5397 5397 snR31 snR31 51 66 30.583346 175.958473 103.2709095 2.013978002 -0.092065 10 54 SH12626 12626 MT_15S MT_15S 31.476897 189.870105 31.476897 159.393208 95.4350525 1.979707917 0.062226 10 55 SH17555 17555 YJL189W_10_75932_76473_INTRON_7_392 intron 36.694677 239.441997 36.694677 203.74732 120.2209985 2.079980331 -0.139265 10 56 SH18623 18623 YNL096C_14_444312_443395_INTRON_145_489 intron 32.088294 183.834236 32.088294 152.745942 92.417118 1.965752421 0.137494 10 57 SH657 657 Gln2 71-72 + 3' flank 71 3' flank 29.701874 130.876353 80.2891135 1.904656663 0.098836 10 58 SH13901 13901 MT COB intronic/exon3 31.621306 189.656257 31.621306 159.034951 95.3281285 1.979221067 0.073069 10 59 SH15177 15177 MT COX3 5' / cox3 29.307324 167.986024 29.307324 139.6787 84.493012 1.926820792 0.019946 10 60 SH7308 7308 snR66 snR66 31 47 32.309799 164.105761 98.20778 1.992145894 0.081445 10 61 SH18905 18905 YOL120C_15_94401_93394_INTRON_113_559 intron 31.126204 195.824659 31.126204 165.698455 98.4123295 1.993049512 0.001865 10 62 SH20086 20086 YCR097W spliced 28.941904 159.493893 94.2178985 1.974133413 -0.111698 10 63 SH3855 3855 RNaseP RNaseP 241 253 821.367266 985.450151 903.4087085 2.955884273 0.295295 10 64 SH224 224 Arg3 5' flank 30.943785 148.367444 89.6556145 1.952577492 0.085682 10 65 SH10497 10497 RUF8 RUF8 411 427 33.0324 162.230462 97.631431 1.989589655 0.13447 10 66 SH16873 16873 YGL187C_7_150529_149708_INTRON_1_342 intron 30.977337 207.734885 30.977337 177.757548 104.3674425 2.018565041 -0.078472 10 67 SH19844 19844 Negative Control 31.023488 175.542551 103.2830195 2.014028926 -0.062949 10 68 SH12430 12430 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.260209 186.565957 35.260209 152.305748 93.7829785 1.972124022 0.320616 10 69 SH17342 17342 YIL018W_9_316766_317930_INTRON_5_404 intron 33.205987 224.52279 33.205987 192.316803 112.761395 2.05216044 -0.100053 10 70 SH13697 13697 MT ORF 5 (hypothetical) 3' 31.119804 234.406531 31.119804 204.286727 117.7032655 2.070788512 -0.279672 10 71 SH8445 8445 snoRNA cluster 5 snR128 37.372759 224.550817 37.372759 188.178058 112.7754085 2.052214409 0.046815 10 72 SH2430 2430 Phe5 5' flank 31.009222 155.306529 93.1578755 1.969219576 0.053038 10 73 SH4118 4118 SRP RNA SRP RNA 481 493 37.130849 171.975453 104.553151 2.019337126 0.222422 10 74 SH14171 14171 MT COB intronic 30.732532 170.237019 30.732532 140.504487 85.6185095 1.932567663 0.115358 10 75 SH19741 19741 Negative Control 59.476792 232.228035 145.8524135 2.16391362 -0.09816 10 76 SH12527 12527 MT_ORF6 + ORF7 (hypothetical) ORF6/7 32.451324 195.762921 32.451324 164.311597 98.3814605 1.992913265 0.088342 10 77 SH15201 15201 MT COX3 cox3 35.367068 229.981941 35.367068 195.614873 115.4909705 2.062548031 -0.076624 10 78 SH20429 20429 YGL033W spliced 36.272154 188.629883 112.4510185 2.050963393 0.020444 10 79 SH15520 15520 YBR048W_2_332790_333771_INTRON_46_556 intron 30.121348 180.867013 30.121348 151.745665 90.9335065 1.958723938 0.011539 10 80 SH2643 2643 Pro3 3' flank 36.203675 208.452971 122.328323 2.087527022 -0.198523 10 81 SH9063 9063 snR14 / U4 RNA 5' 30.146001 162.455655 96.300828 1.983630021 -0.04201 10 82 SH15132 15132 MT tRNA Phe tRNA / 3' 30.204377 211.890781 30.204377 182.686404 106.4453905 2.02712686 -0.153498 10 83 SH1398 1398 Leu1 tRNA-intron/exon 61 76 40.489534 174.501009 107.4952715 2.031389361 0.267826 10 84 SH18492 18492 YMR194W_13_651144_651909_INTRON_17_479 intron 34.445758 219.982475 34.445758 186.536717 110.4912375 2.043327838 -0.004648 10 85 SH16982 16982 YGR034W_7_555923_556666_INTRON_20_496 3' exon 227.38672 681.850922 227.38672 455.464202 341.425461 2.533295904 -0.009255 10 86 SH7736 7736 snoRNA cluster1 intergenic 32.532792 214.894098 32.532792 183.361306 107.947049 2.033210774 -0.044122 10 87 SH15376 15376 YBL027W_2_168385_169338_INTRON_3_386 intron 36.691291 206.587882 36.691291 170.896591 103.793941 2.016172002 0.218775 10 88 SH1472 1472 Leu2 3' flank 34.656804 172.065612 103.361208 2.014357576 0.138935 10 89 SH17039 17039 YGR183C_7_859471_859058_INTRON_4_216 intron 34.665731 201.686868 34.665731 168.021137 101.343434 2.005795616 0.179382 10 90 SH20834 20834 YKR095W-A spliced 34.664137 194.209445 114.436791 2.058565671 -0.075123 10 91 SH10603 10603 RUF8 941-951 + 3' 941 34.658498 158.813934 96.736216 1.985589095 0.245926 10 92 SH6781 6781 snR50 81-90 + 3' 81 30.539006 173.888905 102.2139555 2.009510195 -0.082757 10 93 SH10770 10770 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 736 749 61.531817 214.677157 138.104487 2.140207789 0.092208 10 94 SH9876 9876 RUF5-1 RUF5-1 186 203 30.568485 129.808541 80.188513 1.90411216 0.165791 10 95 SH16531 16531 YER131W_5_423587_424307_INTRON_1_361 intron 32.674476 225.942008 32.674476 194.267532 113.471004 2.054884898 -0.136413 10 96 SH1879 1879 Leu9 3' flank 30.67987 169.062494 99.871182 1.99944019 -0.045555 10 97 SH16792 16792 YGL103W_7_310965_311925_INTRON_50_560 intron 30.773426 175.948874 30.773426 146.175448 88.474437 1.946817808 0.086283 10 98 SH3316 3316 Thr3 5' flank 30.890181 142.310469 86.600325 1.937519522 0.115849 10 99 SH20427 20427 YGL033W spliced 47.800436 205.46633 126.633383 2.102548209 0.005916 10 100 SH21786 21786 copy of SH14441 31.169597 171.95007 101.5598335 2.00672198 -0.033158 10 101 SH10721 10721 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 491 512 31.316603 181.175776 106.2461895 2.026313363 -0.077462 10 102 SH855 855 Glu2 tRNA 41 53 2600.728453 2819.101113 2709.914783 3.432955634 0.136592 10 103 SH15320 15320 YAL003W_1_142172_143158_INTRON_81_446 intron 35.872335 239.815031 35.872335 204.942696 120.4075155 2.080653595 -0.168041 10 104 SH9389 9389 RUF1 RUF1 521 542 31.702786 189.118971 110.4108785 2.043011865 -0.127254 11 2 SH448 448 Asp1 61-71 + 3' flank 61 3' flank 33.353386 178.198391 105.7758885 2.024386682 0.033915 11 3 SH4903 4903 snR9 5' 29.194665 133.186613 81.190639 1.909505959 0.048924 11 4 SH21033 21033 YMR125W spliced 1860.663632 2510.281869 2185.472751 3.339545396 -0.123427 11 5 SH11946 11946 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6616 6633 6285.153124 5303.325808 5794.239466 3.76299644 0.284567 11 6 SH19274 19274 YPL143W_16_282121_282969_INTRON_20_544 intron 29.340412 191.417891 29.340412 163.077479 96.2089455 1.983215455 -0.101318 11 7 SH1083 1083 Gly3 3' flank 35.734845 171.440213 103.587529 2.015307473 0.181775 11 8 SH13354 13354 MT COX1 intronic 29.382365 217.338916 29.382365 188.956551 109.169458 2.038101154 -0.239364 11 9 SH21326 21326 YPR028W spliced 29.412496 183.487396 106.449946 2.027145445 -0.207607 11 10 SH10748 10748 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 626 642 158.057048 313.125707 235.5913775 2.372159391 0.252695 11 11 SH8234 8234 snoRNA cluster 3; 3' 31.678696 170.179849 31.678696 139.501153 85.5899245 1.932422643 0.184311 11 12 SH6921 6921 snR58 5' 31.8027 150.141702 90.972201 1.958908702 0.132872 11 13 SH984 984 Gly2 5' flank 31.961853 169.715355 100.838604 2.003626825 0.027055 11 14 SH10457 10457 RUF8 RUF8 211 230 29.98369 134.479578 82.231634 1.91503892 0.09756 11 15 SH19147 19147 YPL075W_16_412249_415357_INTRON_9_759 intron 32.350391 218.136724 32.350391 186.786333 109.568362 2.039685169 -0.082087 11 16 SH13321 13321 MT COX1 COX1-ai5a 30.363616 213.545538 30.363616 184.181922 107.272769 2.030489491 -0.151952 11 17 SH17817 17817 YKR057W_11_551293_551878_INTRON_25_346 intron 32.752967 220.800242 32.752967 189.047275 110.900121 2.04493202 -0.087574 11 18 SH17657 17657 YKL002W_11_437416_438182_INTRON_61_128 exon/intron 30.718645 195.843561 30.718645 166.124916 98.4217805 1.993091217 -0.025385 11 19 SH12249 12249 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.332488 224.374432 35.332488 190.041944 112.687216 2.05187465 -0.014368 11 20 SH8596 8596 snR19 / U1 RNA U1 476 493 31.013828 139.534008 85.273918 1.930816218 0.139949 11 21 SH13958 13958 MT COB Cytbi3 30.01781 175.172372 30.01781 146.154562 88.086186 1.944907806 0.034805 11 22 SH17410 17410 YIL106W_9_166412_167441_INTRON_21_105 exon/intron 31.257329 177.971586 31.257329 147.714257 89.485793 1.951754091 0.110179 11 23 SH2262 2262 Phe2 5' flank 29.098908 150.744457 89.9216825 1.953864424 -0.054766 11 24 SH17423 17423 YIL111W_9_155219_155762_INTRON_2_89 intron 139.366374 422.371095 139.366374 284.004721 211.6855475 2.325691208 0.301807 11 25 SH15344 15344 YBL018C_2_186436_185960_INTRON_48_122 5' exon 31.516007 203.283009 31.516007 172.767002 102.1415045 2.009202251 -0.017312 11 26 SH3773 3773 Val4 3' flank 29.278652 149.752062 89.515357 1.951897548 -0.036635 11 27 SH10430 10430 RUF8 RUF8 76 93 31.563292 175.625603 103.5944475 2.015336479 -0.031183 11 28 SH9952 9952 RUF5-1 RUF5-1 566 582 33.818186 196.291436 115.054811 2.060904783 -0.115827 11 29 SH4889 4889 snR8 3' 29.221709 129.743251 79.48248 1.900271409 0.071287 11 30 SH6176 6176 snR40 5' 31.430943 177.239497 104.33522 2.018430936 -0.048332 11 31 SH12539 12539 MT_ORF6 + ORF7 (hypothetical) ORF6/7 31.363679 222.02003 31.363679 191.656351 111.510015 2.047313874 -0.162626 11 32 SH664 664 Gln2 3' flank 31.302113 180.363729 105.832921 2.024620783 -0.073763 11 33 SH3920 3920 RNase MRP RNaseMRP 16 33 62.955956 230.158284 146.55712 2.166006922 -0.033276 11 34 SH21259 21259 YPL079W spliced 37.98495 203.525878 120.755414 2.081906611 -0.1146 11 35 SH3416 3416 Trp1 5' flank 31.197732 178.730387 104.9640595 2.021040619 -0.070764 11 36 SH11168 11168 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2726 2743 46.97386 197.382714 122.178287 2.086994032 0.085137 11 37 SH18588 18588 YNL050C_14_534978_534075_INTRON_18_108 intron 31.173926 187.282158 31.173926 157.108232 94.141079 1.973779172 0.054688 11 38 SH4115 4115 SRP RNA SRP RNA 466 483 31.161354 192.340369 111.7508615 2.04825088 -0.176391 11 39 SH4251 4251 telomerase RNA telomerase 291 309 31.145049 128.852152 79.9986005 1.903082389 0.210907 11 40 SH6640 6640 snR48 snR48 26 45 31.125764 136.707079 83.9164215 1.923846956 0.163488 11 41 SH20650 20650 YIL004C spliced 36.722825 184.300508 110.5116665 2.043408128 0.07975 11 42 SH21860 21860 copy of SH18010 28.845037 131.751663 80.29835 1.904706621 0.031992 11 43 SH9393 9393 RUF1 541-550 + 3' 541 85.214692 279.136624 182.175658 2.260490347 -0.150507 11 44 SH12358 12358 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.060034 195.057423 31.060034 164.997389 98.0287115 1.991353294 0.002195 11 45 SH5212 5212 snR30 5' 31.04784 147.325757 89.1867985 1.950300575 0.098357 11 46 SH14197 14197 MT COB Exon6 31.032681 164.091627 31.032681 134.058946 82.5458135 1.916695052 0.172424 11 47 SH15833 15833 YDL075W_4_322225_322987_INTRON_58_478 intron 28.773304 173.176422 28.773304 145.403118 87.088211 1.939959369 -0.050085 11 48 SH18435 18435 YMR142C_13_551206_550205_INTRON_5_406 intron 30.976768 217.637591 30.976768 187.660823 109.3187955 2.038694838 -0.141945 11 49 SH12933 12933 MT COX1 COX1ai2 84.82222 327.651084 84.82222 243.828864 164.325542 2.215705073 0.109207 11 50 SH13953 13953 MT COB Cytbi3 28.627974 165.583925 28.627974 137.955951 83.2919625 1.920603095 -0.019777 11 51 SH17547 17547 YJL177W_10_90783_91654_INTRON_310_626 intron 28.535897 158.476739 28.535897 130.940842 79.7383695 1.901667351 0.014744 11 52 SH4090 4090 SRP RNA SRP RNA 341 355 179.545172 349.471829 264.5085005 2.422439634 0.190836 11 53 SH10070 10070 RUF6 RUF6 196 215 32.666565 176.552097 104.609331 2.019570425 0.024652 11 54 SH634 634 Gln2 5' flank 32.469362 169.109963 100.7896625 2.003415991 0.060135 11 55 SH20732 20732 YJL189W spliced 43.134721 215.720924 129.4278225 2.112027645 -0.16893 11 56 SH3999 3999 RNase MRP 3' 36.353138 201.64269 118.997914 2.075539348 -0.123267 11 57 SH11065 11065 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2211 2228 32334.52857 20070.93456 26202.73156 4.418346568 0.288376 11 58 SH19109 19109 YOR312C_15_901173_900242_INTRON_2_427 intron 33.762795 234.431806 33.762795 201.669011 117.715903 2.070835138 -0.175849 11 59 SH12436 12436 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.468123 201.409528 31.468123 170.941405 101.204764 2.005200956 -0.009361 11 60 SH11138 11138 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2576 2591 40845.36721 32870.33942 36857.85331 4.566530037 -0.191607 11 61 SH1525 1525 Leu3 tRNA 96 112 52.331626 192.062545 122.1970855 2.087060848 0.215519 11 62 SH1191 1191 Ile1 5' flank 31.167634 167.573522 99.370578 1.997257816 -0.007081 11 63 SH3291 3291 Thr2 tRNA 56 70 33.22147 157.978789 95.6001295 1.980458481 0.172121 11 64 SH17761 17761 YKL157W_11_154993_158183_INTRON_282_664 intron 31.105818 164.386985 31.105818 134.281167 82.6934925 1.917471334 0.176091 11 65 SH16281 16281 YDR447C_4_1355542_1354818_INTRON_4_317 intron 271.862433 754.341221 271.862433 483.478788 377.6706105 2.57711319 0.099268 11 66 SH13582 13582 MT COX1 Exon 6 54.240209 249.350267 54.240209 196.110058 125.1751335 2.097518063 0.194311 11 67 SH21745 21745 copy of SH12760 37.442316 184.580212 111.011264 2.045367048 0.090174 11 68 SH4741 4741 snR4 3' 46.937019 175.097547 111.017283 2.045390594 0.356216 11 69 SH9732 9732 RUF4 RUF4 436 452 39.576748 156.317023 97.9468855 1.990990631 0.459937 11 70 SH10261 10261 RUF7 5' 31.150034 170.687514 100.918774 2.003971966 -0.026844 11 71 SH1408 1408 Leu1 111-115 + 3' flank 111 28.997663 145.949616 87.4736395 1.941877197 -0.03665 11 72 SH14693 14693 MT 21S rRNA 3' 70.804641 299.278687 70.804641 229.474046 150.1393435 2.176494513 0.071317 11 73 SH12147 12147 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7621 7637 35.0043 207.11048 121.05739 2.082991306 -0.208287 11 74 SH18937 18937 YOL121C_15_92849_92025_INTRON_21_410 intron 32.748483 196.592004 32.748483 164.843521 98.796002 1.99473937 0.102098 11 75 SH4366 4366 telomerase RNA telomerase 866 883 36.674026 226.827255 131.7506405 2.119752735 -0.383388 11 76 SH2698 2698 Pro4 3' flank 32.385463 160.753602 96.5695325 1.984840129 0.106786 11 77 SH2198 2198 Met2 3' flank 28.171695 110.274758 69.2232265 1.840251838 0.131055 11 78 SH20611 20611 YHR079C-A spliced 44.321263 218.043297 131.18228 2.117875175 -0.175777 11 79 SH2142 2142 Met1 3' flank 30.051035 150.336782 90.1939085 1.955177207 0.014245 11 80 SH4434 4434 telomerase RNA telomerase 1206 1220 30.0387 162.754222 96.396461 1.98406109 -0.050898 11 81 SH14321 14321 MT VAR1 includes 5’ processing site VAR1 30.061074 196.042806 30.061074 166.981732 98.521403 1.993530588 -0.071063 11 82 SH17650 17650 YJR145C_10_702761_701720_INTRON_15_270 intron 32.134977 207.21195 32.134977 176.076973 104.105975 2.017475656 -0.000235 11 83 SH969 969 Gly1 3' flank 32.195952 157.638514 94.917233 1.977345069 0.115696 11 84 SH12475 12475 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 23539.05517 36469.48202 23539.05517 12931.42684 18235.24101 4.260911508 0.575543 11 85 SH8166 8166 snoRNA cluster 3; snR70 40.476573 202.53489 40.476573 163.058317 101.767445 2.007608871 0.415311 11 86 SH20502 20502 YGR001C spliced 32.341693 183.03892 107.6903065 2.032176613 -0.04821 11 87 SH14847 14847 MT tRNA Asp 3' 30.316915 167.616158 30.316915 138.299243 84.308079 1.925869194 0.09901 11 88 SH19841 19841 Negative Control 34.407439 191.058561 112.733 2.052051064 -0.046399 11 89 SH17744 17744 YKL157W_11_154993_158183_INTRON_282_664 5' exon 34.399683 229.853899 34.399683 196.454216 115.4269495 2.062307218 -0.10557 11 90 SH6824 6824 snR52 snR52 26 45 34.386192 189.30495 111.845571 2.048618791 -0.031579 11 91 SH9229 9229 snR6 / U6 RNA U6 16 31 36.416145 161.523829 98.969987 1.995503513 0.304941 11 92 SH2422 2422 Phe4 3' flank 32.323795 170.600659 101.462227 2.00630439 0.042819 11 93 SH19711 19711 Negative Control 32.328511 156.338285 94.333398 1.974665479 0.131792 11 94 SH2924 2924 Pro8 3' flank 30.309022 158.132252 94.220637 1.974146036 -0.008967 11 95 SH18360 18360 YMR033W_13_337787_339276_INTRON_31_116 intron/exon 32.396926 223.182904 32.396926 191.785978 112.091452 2.049572495 -0.124938 11 96 SH9580 9580 RUF3 RUF3 286 298 36.57402 191.522396 114.048208 2.057088466 -0.006835 11 97 SH10633 10633 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 51 68 30.517493 161.240386 95.8789395 1.981723222 -0.01051 11 98 SH15216 15216 MT COX3 cox3 30.639235 191.312458 30.639235 161.673223 96.156229 1.982977423 -0.004419 11 99 SH17272 17272 YHR123W_8_354817_356083_INTRON_51_141 intron/exon 37.012031 236.316211 37.012031 200.30418 118.6581055 2.07429741 -0.096053 11 100 SH1711 1711 Leu6 3' flank 28.848991 148.677004 88.7629975 1.94823196 -0.061904 11 101 SH8155 8155 snoRNA cluster 3; intergenic/snR70 28.993712 179.85411 28.993712 151.860398 90.427055 1.956298387 -0.068257 11 102 SH1283 1283 Ile2 tRNA 111 123 33.357023 176.796106 105.0765645 2.021505865 0.047377 11 103 SH18306 18306 YML073C_13_124172_123227_INTRON_16_430 intron 31.384878 181.25859 31.384878 150.873712 91.129295 1.95965801 0.101486 11 104 SH10584 10584 RUF8 RUF8 846 863 31.509574 159.716142 95.612858 1.9805163 0.062109 12 2 SH5931 5931 snR36 snR36 111 123 53.873916 192.028612 122.951264 2.089732998 0.235877 12 3 SH14699 14699 MT tRNA thr2 5' 27.188281 172.405077 27.188281 146.216796 86.7025385 1.938031813 -0.173768 12 4 SH9053 9053 snR17a / U3a 3' 31.511501 142.113886 86.8126935 1.938583231 0.158297 12 5 SH4687 4687 snR4 5' 31.562242 129.19521 80.378726 1.905141118 0.236859 12 6 SH9641 9641 RUF4 5' 50.853997 205.188844 128.0214205 2.107282642 0.050527 12 7 SH20413 20413 YFR032C-A spliced 35.900821 190.886281 113.393551 2.054588356 -0.012733 12 8 SH6257 6257 snR42 snR42 66 85 31.661578 148.021626 89.841602 1.953477487 0.135163 12 9 SH12286 12286 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 46.689342 236.455315 46.689342 190.765973 118.7276575 2.074551899 0.157992 12 10 SH10514 10514 RUF8 RUF8 496 519 29.620438 154.51483 92.067634 1.964106983 -0.037913 12 11 SH1154 1154 His1 5' flank - tRNA8 8 31.843443 159.271709 95.557576 1.980265125 0.084644 12 12 SH20843 20843 YLL050C spliced 53.543413 171.575004 112.5592085 2.051381031 0.483589 12 13 SH18829 18829 YNL302C_14_62942_61957_INTRON_21_571 intron 33.175777 221.01542 33.175777 188.839643 111.00771 2.045353144 -0.070355 12 14 SH5637 5637 snR34 snR34 106 122 31.166972 203.406417 117.2866945 2.069248747 -0.27057 12 15 SH9147 9147 snR7 U5 RNA U5 6 23 35.697209 192.532027 114.114618 2.057341281 -0.035454 12 16 SH20362 20362 YER131W spliced 47.980924 219.393885 133.6874045 2.126090492 -0.136577 12 17 SH5880 5880 snR35 3' 30.539958 168.490863 99.5154105 1.997890339 -0.050659 12 18 SH3220 3220 Thr1 5' flank 30.672772 152.83409 91.753431 1.962622313 0.043398 12 19 SH6712 6712 snR49 snR49 86 103 44.146072 198.688318 121.417195 2.084280196 0.030849 12 20 SH3195 3195 Ser5 3' flank 37.58836 197.359891 117.4741255 2.069942221 -0.052871 12 21 SH19828 19828 Negative Control 30.98575 178.293664 104.639707 2.019696515 -0.081024 12 22 SH18037 18037 YLR333C_12_796335_795573_INTRON_1_423 5' exon 88.832821 345.677225 88.832821 257.844404 173.3386125 2.238895316 0.042523 12 23 SH15483 15483 YBL092W_2_45639_46364_INTRON_1_333 exon/intron 31.139305 213.638968 31.139305 183.499663 107.319484 2.030678576 -0.101024 12 24 SH15873 15873 YDL082W_4_308423_309387_INTRON_5_369 5' exon 40.216155 243.84611 40.216155 204.629955 122.423055 2.087863213 -0.092708 12 25 SH21662 21662 copy of SH9192 28.98569 143.079833 86.0327615 1.934663863 -0.022043 12 26 SH5227 5227 snR30 5' - 7 -14 7 31.259172 216.259744 123.759458 2.092578399 -0.382491 12 27 SH5778 5778 snR35 snR35 76 98 31.255181 128.630979 79.94308 1.902780876 0.21968 12 28 SH15743 15743 YCR028C-A_3_173432_172942_INTRON_243_325 intron/exon 28.975777 183.131003 28.975777 155.155226 92.0655015 1.964096923 -0.086929 12 29 SH8859 8859 LSR1 / U2 RNA U2 936 952 240.748839 471.013535 355.881187 2.55130503 -0.000014 12 30 SH14078 14078 MT COB Cytbi4 31.13257 183.060859 31.13257 152.928289 92.0304295 1.963931449 0.073778 12 31 SH3878 3878 RNaseP RNaseP 356 368 37.815991 170.361799 104.088895 2.017404398 0.260233 12 32 SH10990 10990 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1836 1853 15715.96713 6706.924175 11211.44565 4.049661616 1.096955 12 33 SH9845 9845 RUF5-1 RUF5-1 31 52 31.001935 178.695477 104.848706 2.020563075 -0.082335 12 34 SH12904 12904 MT COX1 COX1ai2 30.981797 173.161432 30.981797 143.179635 87.080716 1.939921991 0.117062 12 35 SH6816 6816 snR52 5' - 5 -14 5 30.971921 197.969261 114.470591 2.058693925 -0.23237 12 36 SH8291 8291 snoRNA cluster4 intergenic 37.679495 225.94064 37.679495 189.261145 113.47032 2.05488228 0.040099 12 37 SH11047 11047 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2121 2138 32872.81375 24155.14342 28513.97858 4.455057819 0.015608 12 38 SH13941 13941 MT COB Cytbi3 30.960742 157.515841 30.960742 127.555099 79.2579205 1.899042674 0.206291 12 39 SH9967 9967 RUF5-1 RUF5-1 641 657 33.188193 192.347157 112.767675 2.052184626 -0.100962 12 40 SH5758 5758 snR35 5' 69.084212 172.550475 120.8173435 2.082129282 0.644553 12 41 SH814 814 Glu1 3' flank 30.935111 169.262876 100.0989935 2.000429711 -0.031271 12 42 SH10116 10116 RUF6 RUF6 426 447 35.393138 191.447324 113.420231 2.054690527 -0.029201 12 43 SH4482 4482 U3b (snR17b) 5' 30.918448 125.710537 78.3144925 1.893842138 0.214764 12 44 SH21859 21859 copy of SH18009 30.909526 184.830384 107.869955 2.032900498 -0.122211 12 45 SH3684 3684 Val3 5' flank 33.127783 184.745446 108.9366145 2.037173874 -0.035101 12 46 SH11907 11907 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6421 6439 30101.19595 27861.02603 28981.11099 4.46211503 -0.325324 12 47 SH318 318 Arg5 5' flank 84.610472 251.508721 168.0595965 2.225463316 0.046143 12 48 SH5895 5895 snR36 5' 30.81301 170.465276 100.639143 2.00276693 -0.045856 12 49 SH12799 12799 MT COX1 COX1ai1 32.979752 236.483389 32.979752 204.503637 118.7416945 2.074603242 -0.22285 12 50 SH7102 7102 snR63 snR63 16 33 30.686138 125.270167 77.9781525 1.891972941 0.201615 12 51 SH14789 14789 "MT tRNAs (Lys, Arg1, Gly)" 5' 30.590479 186.814841 30.590479 157.224362 93.9074205 1.972699911 0.01488 12 52 SH7353 7353 snR68 5' - 7 -14 7 30.469765 127.186512 78.8281385 1.896681271 0.174881 12 53 SH12704 12704 MT ORF 8 (hypothetical) ORF8 28.13699 165.97 28.13699 138.83301 83.485 1.921608452 -0.061149 12 54 SH9295 9295 RUF1 RUF1 51 68 30.160027 158.095742 94.1278845 1.973718298 -0.019007 12 55 SH2669 2669 Pro4 tRNA 11 28 34.315453 158.218109 96.266781 1.98347645 0.23115 12 56 SH18181 18181 YLR448W_12_1028848_1029762_INTRON_16_399 intron 31.961818 209.861077 31.961818 178.899259 105.4305385 2.022966425 -0.026491 12 57 SH16804 16804 YGL137W_7_249872_252741_INTRON_19_218 intron 33.929414 220.455247 33.929414 187.525833 110.7276235 2.044255979 -0.031665 12 58 SH2032 2032 Lys3 3' flank 31.637344 155.69145 93.664397 1.971574542 0.09265 12 59 SH21329 21329 YPR043W spliced 37.890418 203.857151 120.8737845 2.08233212 -0.119812 12 60 SH1348 1348 Ile3 tRNA 121 133 67.561328 200.82763 134.194479 2.127734649 0.306476 12 61 SH15572 15572 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.25406 192.288651 29.25406 164.034591 96.6443255 1.985176359 -0.112175 12 62 SH4358 4358 telomerase RNA telomerase 826 844 29.217789 164.954514 97.0861515 1.987157286 -0.11928 12 63 SH3508 3508 Tyr1 81-89 + 3' flank 81 29.197182 137.334733 83.2659575 1.92046748 0.025205 12 64 SH15108 15108 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 32.347389 202.509451 32.347389 171.162062 101.7547255 2.007554587 0.040845 12 65 SH13713 13713 MT tRNAGlu (and 5' processing site for COB) 3' 31.290844 200.598799 31.290844 170.307955 100.7993995 2.003457945 -0.016151 12 66 SH20848 20848 YLR048W spliced 35.507478 186.106822 110.80715 2.044567785 0.034697 12 67 SH20952 20952 YML024W spliced 65.129996 230.766852 147.948424 2.170110343 -0.011061 12 68 SH8635 8635 snR19 / U1 RNA 3' 29.176177 182.065335 105.620756 2.023749272 -0.214783 12 69 SH21370 21370 Leu1_5 spliced 35.465146 193.005335 114.2352405 2.0578001 -0.045416 12 70 SH5386 5386 snR31 5' - 15 -4 15 31.201118 195.483626 113.342372 2.054392297 -0.202217 12 71 SH13300 13300 MT COX1 COX1-ai5a 31.114294 222.512326 31.114294 192.398032 111.756163 2.048271482 -0.178707 12 72 SH18564 18564 YMR292W_13_854795_855293_INTRON_23_104 3' exon 30.991873 157.879319 30.991873 127.887446 79.4396595 1.900037374 0.20638 12 73 SH13817 13817 MT COB Cytbi2 30.838214 203.999946 30.838214 174.161732 102.499973 2.010723751 -0.066123 12 74 SH18664 18664 YNL112W_14_413636_416278_INTRON_1274_2275 intron 32.72916 216.08145 32.72916 184.35229 108.540725 2.035592718 -0.046008 12 75 SH19359 19359 YPL249C-A_16_76239_75699_INTRON_17_254 3' exon 36.648002 241.887799 36.648002 206.239797 121.4438995 2.084375704 -0.166646 12 76 SH4424 4424 telomerase RNA telomerase 1156 1177 32.361378 146.692619 89.5269985 1.951954024 0.187839 12 77 SH12277 12277 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.247576 224.905534 34.247576 191.657958 112.952767 2.052896874 -0.057264 12 78 SH13464 13464 MT COX1 intronic 34.13396 197.839666 34.13396 164.705706 99.419833 1.997473029 0.180408 12 79 SH4329 4329 telomerase RNA telomerase 681 698 44.199315 207.481518 125.8404165 2.099820147 -0.065817 12 80 SH18118 18118 YLR388W_12_898158_898821_INTRON_1_488 5' exon 38.092122 252.616328 38.092122 215.524206 126.808164 2.103147215 -0.243808 12 81 SH18686 18686 YNL112W_14_413636_416278_INTRON_1274_2275 intron 38.105525 228.590158 38.105525 191.484633 114.795079 2.059923271 0.022616 12 82 SH7533 7533 snR79 snR79 6 24 50.325893 197.532879 123.929386 2.093174298 0.127229 12 83 SH11988 11988 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S/3'ETS 6826 6848 30.076552 132.113456 81.095004 1.9089941 0.117906 12 84 SH3108 3108 Ser4 5' flank 36.196068 196.29462 116.245344 2.065375567 -0.067787 12 85 SH15707 15707 YBR220C_2_663261_662457_INTRON_302_722 intron 34.187799 204.789621 34.187799 171.601822 102.8948105 2.012393472 0.127168 12 86 SH567 567 Cys1 3' flank 30.13233 119.416232 74.774281 1.873752246 0.203052 12 87 SH38 38 Ala1 3' flank 30.124213 147.541037 88.832625 1.948572496 0.0345 12 88 SH273 273 Arg4 5' flank 32.134775 169.259033 100.696904 2.003016118 0.039877 12 89 SH19033 19033 YOR234C_15_779404_778554_INTRON_20_546 exon/intron 32.110232 208.239591 32.110232 177.129359 104.6197955 2.019613867 -0.007729 12 90 SH20414 20414 YGL030W spliced 36.139601 210.113396 123.1264985 2.090351529 -0.217282 12 91 SH6610 6610 snR47 3' 32.064468 153.578423 92.8214455 1.967648327 0.13155 12 92 SH14138 14138 MT COB intronic 30.029078 176.973578 30.029078 147.9445 88.986789 1.949325536 0.025723 12 93 SH21359 21359 Ile2_3 spliced 34.077139 163.467316 98.7722275 1.994634848 0.184962 12 94 SH16971 16971 YGR034W_7_555923_556666_INTRON_20_496 intron 30.047954 195.241485 30.047954 166.193531 98.1207425 1.991760826 -0.067199 12 95 SH953 953 Gly1 tRNA 16 33 30.088619 156.136479 93.112549 1.969008216 -0.013824 12 96 SH14279 14279 MT VAR1 includes 5’ processing site VAR1 32.187754 217.103037 32.187754 185.915283 109.0515185 2.037631717 -0.080237 12 97 SH11713 11713 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5451 5466 87.678559 197.46291 142.5707345 2.154030387 0.559019 12 98 SH8419 8419 snoRNA cluster 5 snR190 30.374603 213.578308 30.374603 184.203705 107.289154 2.030555821 -0.151396 12 99 SH15587 15587 YBR084C-A_2_415219_414144_INTRON_3_508 intron 30.518738 191.546455 30.518738 162.027717 96.2732275 1.983505532 -0.014371 12 100 SH8719 8719 LSR1 / U2 RNA U2 236 255 28.608314 130.611339 79.6098265 1.900966677 0.022044 12 101 SH8193 8193 snoRNA cluster 3; intergenic 30.838664 180.492286 30.838664 150.653622 90.746143 1.957828175 0.066232 12 102 SH698 698 Gln3 tRNA 21 38 35.190701 157.869718 96.5302095 1.984663249 0.280473 12 103 SH8912 8912 LSR1 / U2 RNA 3' 33.254056 179.038367 106.1462115 2.025904498 0.022407 12 104 SH15054 15054 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 31.275274 208.587036 31.275274 178.311762 104.793518 2.02033442 -0.063741 13 2 SH9714 9714 RUF4 RUF4 346 365 143.174601 334.237823 238.706212 2.377863721 0.029028 13 3 SH3067 3067 Ser3 tRNA 31 49 44.514244 221.890678 133.202461 2.124512249 -0.21237 13 4 SH7681 7681 snoRNA cluster1 intergenic 107.795506 417.338907 107.795506 310.543401 209.1694535 2.320498262 -0.125439 13 5 SH8398 8398 snoRNA cluster 5 snR190 31.728606 174.920155 31.728606 144.191549 87.9600775 1.944285603 0.160788 13 6 SH20768 20768 YKL002W spliced 38.20875 198.779463 118.4941065 2.073696751 -0.057149 13 7 SH12934 12934 MT COX1 COX1ai2 36.09832 238.138675 36.09832 203.040355 119.5693375 2.077619823 -0.143287 13 8 SH3128 3128 Ser4 tRNA 46 63 29.696053 178.385746 104.0408995 2.017204098 -0.161022 13 9 SH21177 21177 YNR053C spliced 36.18614 172.78167 104.483905 2.019049396 0.183657 13 10 SH10444 10444 RUF8 RUF8 146 162 57.85842 194.565592 126.212006 2.101100669 0.256086 13 11 SH3678 3678 Val2 3' flank 32.0209 169.013567 100.5172335 2.002240527 0.034715 13 12 SH14257 14257 MT VAR1 includes 5’ processing site 5' 29.955712 213.256785 29.955712 184.301073 107.1283925 2.029904588 -0.177892 13 13 SH15828 15828 YDL075W_4_322225_322987_INTRON_58_478 5' exon 30.063318 190.139225 30.063318 161.075907 95.5696125 1.980319825 -0.040801 13 14 SH12503 12503 MT_tRNA Pro 3' 28.004906 182.536043 28.004906 155.531137 91.7680215 1.962691369 -0.159616 13 15 SH17998 17998 YLR287C-A_12_713158_712537_INTRON_4_433 intron 30.30384 165.250395 30.30384 135.946555 83.1251975 1.91973269 0.111473 13 16 SH4256 4256 telomerase RNA telomerase 316 333 30.421502 171.434238 100.92787 2.004011108 -0.075519 13 17 SH18490 18490 YMR194W_13_651144_651909_INTRON_17_479 intron 30.528617 221.095478 30.528617 191.566861 111.047739 2.04550972 -0.194165 13 18 SH19020 19020 YOR182C_15_678792_678190_INTRON_4_414 intron 974.202825 2449.254555 974.202825 1476.05173 1225.127278 3.08818121 -0.134168 13 19 SH9400 9400 RUF1 3' 30.699413 156.738348 93.7188805 1.971827092 0.024765 13 20 SH19861 19861 Negative Control 38.542002 175.168863 106.8554325 2.028796606 0.224632 13 21 SH4845 4845 snR8 snR8 6 24 53.120491 195.310872 124.2156815 2.094176426 0.188944 13 22 SH20985 20985 YML067C spliced 33.088787 150.629923 91.859355 1.963123392 0.212514 13 23 SH899 899 Glu3 tRNA 6 23 11249.00624 10118.65666 10683.83145 4.028727028 0.009799 13 24 SH17389 17389 YIL069C_9_232366_231550_INTRON_4_412 intron 37.623951 191.082373 37.623951 154.458422 96.0411865 1.982457517 0.419504 13 25 SH6684 6684 snR49 5' 30.935821 131.576197 81.256009 1.909855488 0.180408 13 26 SH5532 5532 snR33 5' 30.935055 148.667821 89.801438 1.953283291 0.083458 13 27 SH12473 12473 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 4251.647298 8018.764601 4251.647298 3768.117303 4009.882301 3.603131625 0.320422 13 28 SH11915 11915 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6461 6478 19737.57105 21135.83865 20436.70485 4.310410873 -0.433716 13 29 SH4069 4069 SRP RNA SRP RNA 236 250 30.856288 181.153785 106.0050365 2.0253265 -0.10502 13 30 SH21425 21425 Trp1 spliced 147.620672 381.452685 264.5366785 2.422485896 -0.179234 13 31 SH14348 14348 MT VAR1 includes 5’ processing site 3' 30.787908 219.683997 30.787908 189.896089 110.3419985 2.042740846 -0.169252 13 32 SH19117 19117 YPL031C_16_493033_492014_INTRON_18_119 intron 30.765638 164.954294 30.765638 135.188656 82.977147 1.918958498 0.147682 13 33 SH5703 5703 snR34 snR34 436 455 30.754539 153.146206 91.9503725 1.963553493 0.04727 13 34 SH16328 16328 YDR471W_4_1401759_1402553_INTRON_32_415 intron 30.753564 184.222569 30.753564 154.469005 92.6112845 1.966663908 0.040237 13 35 SH11792 11792 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5846 5861 10874.26752 12128.6139 11501.44071 4.060752245 -0.322369 13 36 SH17807 17807 YKR057W_11_551293_551878_INTRON_25_346 5' exon 41.890333 241.803064 41.890333 200.912731 121.401532 2.084224167 -0.026335 13 37 SH19275 19275 YPL143W_16_282121_282969_INTRON_20_544 intron 33.000723 198.918359 33.000723 166.917636 99.9591795 1.999822683 0.103738 13 38 SH6356 6356 snR43 snR43 21 38 31.89785 153.933108 92.915479 1.96808807 0.118869 13 39 SH9549 9549 RUF3 RUF3 131 148 30.793068 141.708819 86.2509435 1.935763855 0.112746 13 40 SH5246 5246 snR30 snR30 81 97 30.798208 148.576788 89.687498 1.952731909 0.074753 13 41 SH16070 16070 YDR005C_4_458099_456832_INTRON_7_86 intron/exon 30.802506 168.099402 30.802506 138.296896 84.549701 1.927112076 0.13249 13 42 SH4473 4473 U3b (snR17b) 5' 30.805219 153.292816 92.0490175 1.964019157 0.049912 13 43 SH5322 5322 snR30 snR30 461 475 44.167601 221.771423 132.969512 2.123752075 -0.216128 13 44 SH15040 15040 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.797008 226.542636 30.797008 196.745628 113.771318 2.056032789 -0.228692 13 45 SH15971 15971 YDL136W_4_217600_218367_INTRON_4_408 5' exon 35.226003 201.907496 35.226003 167.681493 101.453748 2.006268096 0.202003 13 46 SH660 660 Gln2 3' flank 34.083261 134.00544 84.0443505 1.924508525 0.368703 13 47 SH17488 17488 YJL024C_10_396288_395627_INTRON_23_99 intron/exon 32.929545 207.552039 32.929545 175.622494 104.2760195 2.018184445 0.043165 13 48 SH7830 7830 snoRNA cluster1 intergenic/snR74 30.659025 212.721369 30.659025 183.062344 106.8606845 2.028817952 -0.127657 13 49 SH7743 7743 snoRNA cluster1 intergenic 28.38476 161.992849 28.38476 134.608089 81.4964245 1.911138555 -0.018601 13 50 SH5089 5089 snR11 snR11 46 64 28.3077 126.314978 77.311339 1.888243195 0.028039 13 51 SH2215 2215 Phe1 5' flank 29.310911 179.701231 104.506071 2.01914152 -0.192891 13 52 SH15105 15105 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 28.103591 216.643901 28.103591 189.54031 108.8219505 2.036716506 -0.325681 13 53 SH7744 7744 snoRNA cluster1 intergenic 30.152262 162.702575 30.152262 133.550313 81.8512875 1.913025515 0.114771 13 54 SH12253 12253 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.004052 166.443868 30.004052 137.439816 83.721934 1.922839252 0.082021 13 55 SH7232 7232 snR65 5' 29.852921 145.431253 87.642087 1.942712711 0.027342 13 56 SH2138 2138 Met1 3' flank 34.001056 189.226811 111.6139335 2.047718414 -0.044376 13 57 SH4040 4040 SRP RNA SRP RNA 91 106 31.721829 178.588127 105.154978 2.021829837 -0.038812 13 58 SH15956 15956 YDL130W_4_229906_230527_INTRON_115_415 intron 29.488997 216.129265 29.488997 187.640268 108.5646325 2.035688367 -0.22549 13 59 SH12307 12307 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.545654 200.205472 31.545654 169.659818 100.602736 2.002609792 0.002885 13 60 SH17496 17496 YJL041W_10_365480_368069_INTRON_2_119 intron 29.382619 167.061933 29.382619 138.679314 84.0309665 1.924439359 0.030946 13 61 SH12389 12389 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 50.613566 233.841964 50.613566 184.228398 117.420982 2.069745708 0.287735 13 62 SH6532 6532 snR46 snR46 151 167 29.360207 128.068914 78.7145605 1.896055075 0.091691 13 63 SH8343 8343 snoRNA cluster4 snR53 29.360758 187.675334 29.360758 159.314576 94.337667 1.974685132 -0.080968 13 64 SH12878 12878 MT COX1 COX1ai1 29.360244 182.700049 29.360244 154.339805 91.8500245 1.963079276 -0.055305 13 65 SH4532 4532 U3b (snR17b) U3b 216 231 39.958446 195.749446 117.853946 2.071344128 0.004825 13 66 SH14771 14771 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu 31.458591 224.516003 31.458591 194.057412 112.7580015 2.05214737 -0.180015 13 67 SH4644 4644 snR3 snR3 136 153 29.318403 134.122206 81.7203045 1.912329976 0.052377 13 68 SH15926 15926 YDL108W_4_267697_268698_INTRON_29_109 intron 29.282202 160.674815 29.282202 132.392613 80.8374075 1.907612377 0.05989 13 69 SH6788 6788 snR50 3' 31.337273 140.732804 86.0350385 1.934675357 0.154702 13 70 SH9485 9485 RUF2 266-268 + 3' 266 29.152076 134.805061 81.9785685 1.91370033 0.036437 13 71 SH15280 15280 MT 9S rRNA 9S 31.145558 215.7777 31.145558 185.632142 108.38885 2.034984608 -0.117094 13 72 SH11910 11910 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6436 6454 5976.457592 2114.927809 4045.692701 3.606992892 1.678409 13 73 SH10013 10013 RUF6 5' 29.806714 121.929769 75.8682415 1.880060018 0.163444 13 74 SH6474 6474 snR45 3' 34.800122 195.827539 115.3138305 2.061881399 -0.090424 13 75 SH14461 14461 MT 21S rRNA 21S rRNA3 32.544926 216.241379 32.544926 184.696453 108.6206895 2.035912555 -0.055918 13 76 SH18397 18397 YMR125W_13_517538_520445_INTRON_26_347 intron 34.415527 201.834292 34.415527 168.418765 101.417146 2.006111385 0.166715 13 77 SH18248 18248 YML034W_13_209525_212155_INTRON_1921_2046 intron 30.194755 182.860763 30.194755 153.666008 91.9303815 1.963459062 0.006403 13 78 SH21433 21433 Tyr1_2 spliced 46.340884 197.405923 121.8734035 2.08590894 0.076252 13 79 SH14088 14088 MT COB Cytbi4 32.057066 194.362561 32.057066 163.305495 97.6812805 1.989811344 0.071731 13 80 SH17871 17871 YLL050C_12_40413_39803_INTRON_15_193 intron/exon 42.148852 185.42273 42.148852 144.273878 93.211365 1.969468868 0.670653 13 81 SH2748 2748 Pro5 3' flank 30.002669 116.419009 73.210839 1.864575384 0.215249 13 82 SH8142 8142 snoRNA cluster 3; intergenic 1746.568842 3843.90824 1746.568842 2098.339398 1922.45412 3.283855984 0.073293 13 83 SH16918 16918 YGL251C_7_31636_27921_INTRON_59_210 intron 30.021304 167.786026 30.021304 138.764722 84.393013 1.926306492 0.075755 13 84 SH20537 20537 YGR183C spliced 34.06924 194.111945 114.0905925 2.057249836 -0.086277 13 85 SH1691 1691 Leu6 tRNA 21 35 102.15237 272.282271 187.2173205 2.272346025 0.071343 13 86 SH21010 21010 YML124C spliced 29.986291 150.84409 90.4151905 1.956241402 0.00704 13 87 SH485 485 Asp2 5' flank - tRNA2 5' flank 2 31.968413 128.671144 80.3197785 1.904822502 0.266957 13 88 SH6897 6897 snR56 3' 31.924517 177.225673 104.575095 2.019428268 -0.019125 13 89 SH15806 15806 YDL061C_4_341182_340627_INTRON_1_408 intron 59.14917 258.214032 59.14917 200.064862 129.607016 2.112628512 0.212106 13 90 SH14466 14466 MT 21S rRNA 21S rRNA3 31.841302 213.80628 31.841302 182.964978 107.40314 2.031016978 -0.066207 13 91 SH13128 13128 MT COX1 COX1ai3 29.802537 185.53401 29.802537 156.731473 93.267005 1.969728031 -0.036732 13 92 SH20980 20980 YML056C spliced 33.798203 194.62723 114.2127165 2.057714461 -0.099029 13 93 SH2682 2682 Pro4 tRNA 76 90 35.801485 164.955436 100.3784605 2.001640531 0.249074 13 94 SH17435 17435 YIL133C_9_99416_98527_INTRON_32_321 intron 35.817814 231.135054 35.817814 196.31724 116.067527 2.064710731 -0.07547 13 95 SH5299 5299 snR30 snR30 346 363 35.861963 198.835614 117.3487885 2.06947861 -0.102359 13 96 SH15913 15913 YDL083C_4_307788_306925_INTRON_25_456 intron 33.922518 223.165466 33.922518 190.242948 112.082733 2.049538712 -0.056183 13 97 SH183 183 Arg2 31-45 31 45 72.624611 225.786928 149.2057695 2.173785617 0.12589 13 98 SH7785 7785 snoRNA cluster1 intergenic/snR75 30.106051 182.258576 30.106051 153.152525 91.629288 1.962034312 0.003009 13 99 SH6428 6428 snR45 5' - 5 -14 5 32.288152 194.343148 113.31565 2.054289894 -0.151318 13 100 SH21497 21497 copy of SH2290 38.619912 170.160766 104.390339 2.018660308 0.287425 13 101 SH14188 14188 MT COB Exon6 28.505751 172.98891 28.505751 145.483159 86.994455 1.939491572 -0.070189 13 102 SH20244 20244 YDR367W spliced 30.727762 150.582595 90.6551785 1.957392617 0.059138 13 103 SH19330 19330 YPL218W_16_138697_139408_INTRON_29_167 intron 30.877032 182.939074 30.877032 153.062042 91.969537 1.963644 0.055965 13 104 SH607 607 Gln1 3' flank 31.010917 143.354292 87.1826045 1.940429839 0.118024 14 2 SH4213 4213 telomerase RNA telomerase 101 119 29.602471 139.844838 84.7236545 1.928004681 0.040124 14 3 SH1812 1812 Leu8 86-101 + 3' flank 86 38.300536 180.688307 109.4944215 2.039391993 0.15262 14 4 SH5549 5549 snR33 snR33 31 50 34.030515 163.821707 98.926111 1.995310936 0.180202 14 5 SH11645 11645 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5111 5124 24862.78137 18174.11681 21518.44909 4.332810967 0.105426 14 6 SH17322 17322 YIL004C_9_348502_347943_INTRON_12_142 intron 31.959649 178.637393 31.959649 147.677744 89.8186965 1.953366748 0.156493 14 7 SH10979 10979 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1781 1799 23252.81504 14327.20211 18790.00858 4.273926978 0.396726 14 8 SH5242 5242 snR30 snR30 61 77 32.03567 140.158265 86.0969675 1.934987855 0.203759 14 9 SH13328 13328 MT COX1 COX1-ai5a 29.918784 177.692199 29.918784 148.773415 89.3460995 1.951075598 0.01356 14 10 SH2838 2838 Pro7 5' flank - tRNA10 10 959.064182 1307.140959 1133.102571 3.054269225 0.039553 14 11 SH5028 5028 snR10 snR10 171 188 30.031326 151.590593 90.8109595 1.958138264 0.006156 14 12 SH17332 17332 YIL018W_9_316766_317930_INTRON_5_404 exon/intron 32.278271 191.915807 32.278271 160.637536 96.4579035 1.984337818 0.101322 14 13 SH9493 9493 RUF2 3' 30.188182 152.919493 91.5538375 1.961676553 0.009897 14 14 SH20889 20889 YLR275W spliced 30.276183 141.197498 85.7368405 1.933167475 0.080016 14 15 SH12211 12211 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.747529 175.658328 34.747529 141.910799 88.329164 1.94610412 0.362328 14 16 SH1672 1672 Leu6 5' flank 30.443162 181.464197 105.9536795 2.025116043 -0.131957 14 17 SH1633 1633 Leu5 tRNA-exon/intron 31 50 30.511441 180.155279 105.33336 2.022565938 -0.120414 14 18 SH1875 1875 Leu9 3' flank 31.668076 126.540681 79.1043785 1.898200523 0.260088 14 19 SH3635 3635 Val2 5' flank 37.235225 175.897574 106.5663995 2.027620293 0.187732 14 20 SH34 34 Ala1 tRNA + 3' flank 66 3' flank 32.840423 150.032365 91.436394 1.96111909 0.200098 14 21 SH909 909 Glu3 tRNA 56 68 39.500558 177.433414 108.466986 2.035297572 0.214037 14 22 SH1612 1612 Leu5 5' flank 30.649948 163.016469 96.8332085 1.986024322 -0.010396 14 23 SH3258 3258 Thr1 3' flank 32.861247 144.576012 88.7186295 1.948014824 0.231423 14 24 SH11068 11068 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2226 2244 48.37532 201.143515 124.7594175 2.096073338 0.061355 14 25 SH7405 7405 snR69 5' 32.837664 184.42481 108.631237 2.035954725 -0.042707 14 26 SH3749 3749 Val4 5' flank 32.815645 188.561681 110.688663 2.044103142 -0.080944 14 27 SH7148 7148 snR63 246-255 + 3' 246 34.998137 158.616389 96.807263 1.985907942 0.265421 14 28 SH20841 20841 YLL050C spliced 41.598709 181.560817 111.579763 2.047585435 0.200571 14 29 SH5569 5569 snR33 snR33 131 143 32.734712 141.18916 86.961936 1.9393292 0.24262 14 30 SH19903 19903 snR17B spliced 30.513614 149.876936 90.195275 1.955183787 0.048429 14 31 SH571 571 Cys1 3' flank 30.506769 176.742945 103.624857 2.015463944 -0.101272 14 32 SH10664 10664 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 206 224 32.713639 200.709567 116.711603 2.067114034 -0.190028 14 33 SH133 133 Arg1 41-56 41 56 45.98016 206.258703 126.1194315 2.100782004 -0.027416 14 34 SH9919 9919 RUF5-1 RUF5-1 401 420 30.545229 139.478731 85.01198 1.929480131 0.108194 14 35 SH17788 17788 YKL186C_11_93537_92746_INTRON_71_233 5' exon 32.776364 218.999033 32.776364 187.222669 109.9995165 2.041390776 -0.070353 14 36 SH10756 10756 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 666 683 1294.902481 2423.239514 1859.070998 3.269295976 -0.546645 14 37 SH8025 8025 snoRNA cluster 2 snR55 32.828472 202.710359 32.828472 170.881887 101.8551795 2.007983118 0.070107 14 38 SH17300 17300 YHR141C_8_382752_381991_INTRON_5_445 3' exon 184.01177 605.669107 184.01177 422.657337 303.3345535 2.481921885 -0.119876 14 39 SH11560 11560 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4686 4699 49.520969 197.808374 123.6646715 2.092245648 0.113847 14 40 SH14896 14896 MT tRNA Ile 5' / tRNA 31.790823 214.545414 31.790823 183.754591 107.772707 2.032508791 -0.075375 14 41 SH14533 14533 MT 21S rRNA 21S rRNA3 30.702676 177.742835 30.702676 148.040159 89.3714175 1.951198646 0.071237 14 42 SH17884 17884 YLR048W_12_242233_243350_INTRON_91_449 intron 30.717075 170.949865 30.717075 141.23279 85.9749325 1.934371844 0.11027 14 43 SH6080 6080 snR37 snR37 316 335 31.831223 147.248909 89.540066 1.95201741 0.150493 14 44 SH7226 7226 snR65 5' 32.931906 196.08024 114.506073 2.058828521 -0.142685 14 45 SH7903 7903 snoRNA cluster1 intergenic 28.476389 173.691083 28.476389 146.214694 87.3455415 1.941240742 -0.076268 14 46 SH17879 17879 YLR048W_12_242233_243350_INTRON_91_449 intron 35.074308 218.74794 35.074308 184.673632 109.87397 2.040894817 0.033953 14 47 SH16711 16711 YGL031C_7_438393_437938_INTRON_1_456 intron 127.933595 363.501933 127.933595 236.568338 182.2509665 2.26066984 0.559313 14 48 SH6977 6977 snR60 5' 30.513026 142.54986 86.531443 1.937173946 0.088993 14 49 SH7984 7984 snoRNA cluster 2 snR57 30.424224 178.473221 30.424224 149.048997 89.7366105 1.952969661 0.046828 14 50 SH1203 1203 Ile1 5' flank 39.087813 181.881797 110.484805 2.043302554 0.152677 14 51 SH3500 3500 Tyr1 tRNA-intron/exon 41 58 38.941094 164.72104 101.831067 2.007880294 0.352173 14 52 SH8017 8017 snoRNA cluster 2 snR55 30.083487 177.973868 30.083487 148.890381 89.486934 1.951759629 0.024317 14 53 SH12888 12888 MT COX1 COX1ai1 34.275013 229.660224 34.275013 196.385211 115.330112 2.061942714 -0.107374 14 54 SH20341 20341 YER093C-A spliced 29.812319 212.804742 121.3085305 2.083891342 -0.400024 14 55 SH9241 9241 snR6 / U6 RNA U6 76 92 66.266684 238.634337 152.4505105 2.183128883 -0.064748 14 56 SH17993 17993 YLR287C-A_12_713158_712537_INTRON_4_433 exon/intron 29.568952 204.253803 29.568952 175.684851 102.6269015 2.011261217 -0.15354 14 57 SH12526 12526 MT_ORF6 + ORF7 (hypothetical) ORF6/7 30.547093 171.98225 30.547093 142.435157 86.491125 1.936971546 0.091961 14 58 SH19467 19467 ADH1 31.554587 195.232548 113.3935675 2.054588419 -0.186553 14 59 SH13019 13019 MT COX1 COX1ai2 27.288597 171.228563 27.288597 144.939966 86.1142815 1.935075182 -0.159177 14 60 SH6354 6354 snR43 snR43 11 27 31.539926 134.05123 82.795578 1.918007142 0.206615 14 61 SH18536 18536 YMR230W_13_732413_733140_INTRON_53_462 intron 29.440004 218.315469 29.440004 189.875465 109.6577345 2.040039269 -0.24063 14 62 SH3667 3667 Val2 3' flank 29.468145 132.839967 81.154056 1.90931023 0.070592 14 63 SH11170 11170 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2736 2753 31.618657 162.439091 97.028874 1.986900992 0.051394 14 64 SH16562 16562 YER133W_5_432491_433954_INTRON_178_702 intron 46.564077 244.419168 46.564077 198.855091 122.709584 2.088878484 0.062849 14 65 SH2875 2875 Pro7 3' flank 29.49181 142.549639 86.0207245 1.934603096 0.017307 14 66 SH790 790 Glu1 5' flank 27.341297 147.611767 87.476532 1.941891557 -0.169348 14 67 SH18654 18654 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.422317 195.853368 29.422317 167.431051 98.426684 1.993112854 -0.116875 14 68 SH2407 2407 Phe4 86-91 + 3' flank 86 31.479916 140.640044 86.05998 1.934801241 0.164661 14 69 SH21811 21811 copy of SH15491 31.395381 147.529259 89.46232 1.951640156 0.12034 14 70 SH10390 10390 RUF7 3' 33.397305 212.055453 122.726379 2.088937921 -0.292924 14 71 SH13482 13482 MT COX1 intronic 31.163189 202.879663 31.163189 172.716474 101.9398315 2.008343911 -0.03806 14 72 SH13546 13546 MT COX1 intronic 31.015518 184.75405 31.015518 154.738532 92.877025 1.967908296 0.056427 14 73 SH4187 4187 telomerase RNA 5' 32.929386 144.106499 88.5179425 1.947031311 0.238357 14 74 SH18877 18877 YNR053C_14_723108_721117_INTRON_811_1341 intron 30.680083 178.671798 30.680083 148.991715 89.835899 1.953449918 0.064519 14 75 SH15932 15932 YDL115C_4_255042_253994_INTRON_1_88 5' exon 34.623219 238.371074 34.623219 204.747855 119.685537 2.078041673 -0.191044 14 76 SH13322 13322 MT COX1 COX1-ai5a 34.450797 227.944233 34.450797 194.493436 114.4721165 2.058699713 -0.082673 14 77 SH1028 1028 Gly2 3' flank 32.270732 167.408724 99.839728 1.999303389 0.058937 14 78 SH16133 16133 YDR064W_4_579453_580447_INTRON_22_560 intron/exon 56.610753 258.676966 56.610753 203.066213 129.838483 2.113403433 0.147155 14 79 SH12681 12681 MT tRNA Trp tRNA 36.160841 218.080191 36.160841 182.91935 109.5400955 2.039573115 0.085222 14 80 SH21113 21113 YNL096C spliced 32.068914 209.638843 120.8538785 2.082260593 -0.296677 14 81 SH5268 5268 snR30 snR30 191 207 36.099088 223.024759 129.5619235 2.112477387 -0.354237 14 82 SH21646 21646 copy of SH8561 32.038026 134.01616 83.027093 1.919219832 0.23982 14 83 SH6694 6694 snR49 5' - 12 -4 12 32.020157 149.975998 90.9980775 1.959032217 0.147908 14 84 SH21255 21255 YPL075W spliced 34.00923 192.623959 113.3165945 2.054293514 -0.074113 14 85 SH12871 12871 MT COX1 COX1ai1 31.941844 205.632967 31.941844 174.691123 103.3164835 2.014169616 -0.003475 14 86 SH4727 4727 snR4 171-186 + 3' 171 33.89413 170.923309 102.4087195 2.010336936 0.123518 14 87 SH624 624 Gln2 5' flank 29.803186 163.530897 96.6670415 1.985278427 -0.07109 14 88 SH11461 11461 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4191 4206 63.931966 207.581991 135.7569785 2.132762163 0.19298 14 89 SH18116 18116 YLR367W_12_855877_857316_INTRON_698_1180 3' exon 30.674578 230.090436 30.674578 200.415858 115.545218 2.062751976 -0.264653 14 90 SH10372 10372 RUF7 RUF7 471 485 113.69368 286.164224 199.928952 2.300875689 0.082116 14 91 SH19309 19309 YPL198W_16_173151_174701_INTRON_12_420 intron 33.568074 203.980743 33.568074 171.412669 102.4903715 2.010683067 0.107114 14 92 SH608 608 Gln1 3' flank 31.544281 150.311734 90.9280075 1.958697675 0.115023 14 93 SH11139 11139 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2581 2594 23923.19677 16506.18046 20214.68861 4.305667056 0.208498 14 94 SH2525 2525 Pro1 3' flank 31.539067 147.971539 89.755303 1.953060117 0.127391 14 95 SH1656 1656 Leu5 3' flank 31.571978 153.926547 92.7492625 1.967310465 0.097593 14 96 SH18369 18369 YMR079W_13_424988_426058_INTRON_10_165 intron 31.634246 212.388739 31.634246 181.754493 106.6943695 2.028141501 -0.062821 14 97 SH7332 7332 snR66 3' 31.727817 150.438359 91.083088 1.959437746 0.12638 14 98 SH845 845 Glu2 5' flank - tRNA10 10 43.944381 206.71251 125.3284455 2.098049653 -0.061139 14 99 SH12683 12683 MT tRNA Trp tRNA / 3' 31.999078 209.560716 31.999078 178.561638 105.280358 2.022347353 -0.022394 14 100 SH3725 3725 Val3 3' flank 34.197894 182.401983 108.2999385 2.03462821 0.024525 14 101 SH178 178 Arg2 6-12 6 18 34.382345 197.830308 116.1063265 2.064855885 -0.121129 14 102 SH5258 5258 snR30 snR30 141 155 30.446872 187.362937 108.9049045 2.037047439 -0.164231 14 103 SH10724 10724 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 506 525 32.667237 186.364263 109.51575 2.039476582 -0.066593 14 104 SH21630 21630 copy of SH7930 32.815291 183.890498 108.3528945 2.034840517 -0.038627 15 2 SH21381 21381 Lys3_4 spliced 36.331878 184.191377 110.2616275 2.042424399 0.073467 15 3 SH5196 5196 snR13 3' 29.85983 159.570718 94.715274 1.97642002 -0.04729 15 4 SH20833 20833 YKR095W-A spliced 32.074548 206.168281 119.1214145 2.075989842 -0.260196 15 5 SH6868 6868 snR56 5' 53.888383 223.260449 138.574416 2.141683057 -0.091856 15 6 SH1402 1402 Leu1 tRNA 81 97 3629.845661 4409.209378 4019.52752 3.604175006 -0.134226 15 7 SH8219 8219 snoRNA cluster 3; snR51 36.535728 237.11499 36.535728 201.579262 119.057495 2.075756741 -0.119037 15 8 SH3709 3709 Val3 tRNA 26 40 44.198029 184.533657 114.365843 2.058296336 0.200182 15 9 SH9006 9006 snR17a / U3a U3a 316 328 32.268864 178.68986 105.479362 2.023167494 -0.010332 15 10 SH18647 18647 YNL112W_14_413636_416278_INTRON_1274_2275 intron 32.314528 179.085184 32.314528 147.770656 90.042592 1.954447988 0.1789 15 11 SH11444 11444 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4106 4122 3658.702477 1876.166844 2767.434661 3.442077376 1.224854 15 12 SH21129 21129 YNL130C spliced 30.241301 145.188183 87.714742 1.94307259 0.055573 15 13 SH18063 18063 YLR344W_12_819312_820142_INTRON_20_466 5' exon 45.635934 249.881278 45.635934 205.245344 125.440639 2.098438258 -0.02111 15 14 SH1524 1524 Leu3 tRNA 91 108 30.356462 170.412532 100.384497 2.001666647 -0.073447 15 15 SH4835 4835 snR8 5' 30.409695 134.476146 82.4429205 1.916153368 0.127292 15 16 SH17442 17442 YIL133C_9_99416_98527_INTRON_32_321 intron 32.652159 223.795765 32.652159 192.143606 112.3978825 2.050758129 -0.118681 15 17 SH3575 3575 Tyr2 3' flank 32.686687 151.916792 92.3017395 1.965209886 0.180248 15 18 SH3098 3098 Ser3 3' flank 32.70576 180.806241 106.7560005 2.028392295 -0.01409 15 19 SH18427 18427 YMR142C_13_551206_550205_INTRON_5_406 exon/intron 31.607894 193.705463 31.607894 163.097569 97.3527315 1.988348141 0.046647 15 20 SH12241 12241 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.496702 196.16544 30.496702 166.668738 98.58272 1.993800797 -0.042261 15 21 SH19933 19933 YBL026W spliced 34.876215 197.713709 116.294962 2.065560901 -0.109755 15 22 SH19620 19620 RNA14 1.1 32.643277 190.301746 111.4725115 2.047167786 -0.102753 15 23 SH19093 19093 YOR312C_15_901173_900242_INTRON_2_427 intron 28.216721 169.231574 28.216721 142.014853 85.115787 1.930010119 -0.072849 15 24 SH4322 4322 telomerase RNA telomerase 646 665 30.371839 139.392679 84.882259 1.928816929 0.096685 15 25 SH7980 7980 snoRNA cluster 2 snR57 300.379734 929.637741 300.379734 630.258007 465.3188705 2.667750665 -0.226275 15 26 SH16676 16676 YFR032C-A_6_223758_223245_INTRON_1_331 3' exon 1209.804409 3393.370028 1209.804409 2184.565619 1697.185014 3.229729188 -0.472893 15 27 SH1332 1332 Ile3 tRNA-intron 41 57 32.448126 168.67492 100.561523 2.002431842 0.061529 15 28 SH19769 19769 Negative Control 34.608991 196.114953 115.361972 2.062062671 -0.097514 15 29 SH10877 10877 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1271 1284 38152.18646 32167.66005 35159.92325 4.546047918 -0.245879 15 30 SH4768 4768 snR5 snR5 11 27 38.977017 176.544969 107.760993 2.032461585 0.21553 15 31 SH20241 20241 YDR367W spliced 56.551984 176.397344 116.474664 2.066231466 0.455965 15 32 SH17292 17292 YHR141C_8_382752_381991_INTRON_5_445 intron 34.661056 196.449188 34.661056 162.788132 98.724594 1.994425356 0.220953 15 33 SH16309 16309 YDR450W_4_1359912_1360787_INTRON_48_482 intron 30.324758 181.341852 30.324758 152.017094 91.170926 1.959856366 0.024059 15 34 SH4443 4443 telomerase RNA telomerase 1251 1267 39.144622 191.112628 115.128625 2.061183318 0.045885 15 35 SH1467 1467 Leu2 106-114 + 3' flank 106 30.407687 157.756381 94.082034 1.973506698 -0.000295 15 36 SH12029 12029 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS/3'flank 7031 7053 30.446935 147.71171 89.0793225 1.949776905 0.055678 15 37 SH11653 11653 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5151 5168 117.695885 244.106512 180.9011985 2.257441444 0.418066 15 38 SH21171 21171 YNL312W spliced 34.928959 191.175199 113.052079 2.053278553 -0.035444 15 39 SH1294 1294 Ile2 3' flank 30.557079 143.596885 87.076982 1.939903368 0.086059 15 40 SH19294 19294 YPL175W_16_218629_220087_INTRON_18_117 intron/exon 32.801841 224.118832 32.801841 192.316991 112.559416 2.051381831 -0.114724 15 41 SH10760 10760 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 686 699 37.263441 196.047246 116.6553435 2.066904637 -0.044479 15 42 SH15976 15976 YDL136W_4_217600_218367_INTRON_4_408 intron 30.650949 213.108762 30.650949 183.457813 107.054381 2.029604445 -0.130342 15 43 SH13912 13912 MT COB Cytbi3 30.66104 179.756183 30.66104 150.095143 90.3780915 1.956063166 0.057253 15 44 SH10527 10527 RUF8 RUF8 561 578 30.650605 127.60599 79.1282975 1.898331822 0.184777 15 45 SH8954 8954 snR17a / U3a U3a 56 75 30.615819 168.646102 99.6309605 1.998394317 -0.046957 15 46 SH10804 10804 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 906 922 8611.749725 5760.077503 7185.913614 3.856481992 0.560813 15 47 SH4776 4776 snR5 snR5 51 70 33.773722 163.448986 98.611354 1.993926922 0.168356 15 48 SH17006 17006 YGR148C_7_788173_787307_INTRON_1_392 exon/intron 32.564768 211.687957 32.564768 180.123189 106.3439785 2.026712904 -0.012879 15 49 SH10926 10926 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1516 1533 216.346204 399.48747 307.916837 2.488433437 0.162013 15 50 SH17008 17008 YGR148C_7_788173_787307_INTRON_1_392 intron 56.316787 285.997586 56.316787 230.680799 143.498793 2.156848248 -0.127938 15 51 SH7221 7221 snR64 3' 34.330808 154.239665 94.2852365 1.974443695 0.257861 15 52 SH4724 4724 snR4 snR4 156 172 29.859738 143.682797 86.7712675 1.938375941 0.037249 15 53 SH19747 19747 Negative Control 40.462759 173.797718 107.1302385 2.029912072 0.276154 15 54 SH12982 12982 MT COX1 COX1ai2 29.588454 191.326172 29.588454 162.737718 96.163086 1.983008392 -0.082158 15 55 SH4299 4299 telomerase RNA telomerase 531 551 29.4728 121.416018 75.444409 1.877627061 0.143773 15 56 SH304 304 Arg4 3' flank 29.384632 181.099233 105.2419325 2.022188814 -0.196069 15 57 SH163 163 Arg2 5' flank 31.450243 168.06943 99.7598365 1.998955729 0.006791 15 58 SH2100 2100 Lys4 3' flank 31.437049 158.968955 95.203002 1.978650643 0.062566 15 59 SH19255 19255 YPL129W_16_305297_306136_INTRON_10_114 3' exon 117.535744 391.874109 117.535744 275.338365 196.4370545 2.293223413 0.188087 15 60 SH14557 14557 MT 21S rRNA 21S rRNA3 46.404653 212.607695 46.404653 167.203042 106.8038475 2.028586898 0.454798 15 61 SH1102 1102 Gly4 5' flank - tRNA2 2 31.58348 163.316021 97.4497505 1.988780732 0.043843 15 62 SH13086 13086 MT COX1 COX1ai3 27.387932 168.806257 27.387932 142.418325 84.9031285 1.928923693 -0.137847 15 63 SH5754 5754 snR35 5' 33.827105 150.120338 91.9737215 1.96366376 0.257734 15 64 SH10467 10467 RUF8 RUF8 261 283 29.577825 143.119602 86.3487135 1.936255871 0.020331 15 65 SH9051 9051 snR17a / U3a 3' 29.56816 199.807735 114.6879475 2.059517781 -0.303532 15 66 SH12010 12010 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6936 6953 31.66208 175.572696 103.617388 2.01543264 -0.025035 15 67 SH6028 6028 snR37 snR37 56 73 31.596756 176.165536 103.881146 2.016536732 -0.03232 15 68 SH12239 12239 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.389209 161.252373 29.389209 132.863164 81.1261865 1.909161062 0.064807 15 69 SH8169 8169 snoRNA cluster 3; snR70 31.404428 187.335725 31.404428 156.931297 94.1678625 1.973902713 0.070889 15 70 SH5971 5971 snR36 snR36 311 328 33.389648 182.15439 107.772019 2.032506019 -0.001835 15 71 SH14976 14976 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 31.146744 194.439307 31.146744 164.292563 97.7196535 1.989981918 0.011756 15 72 SH19187 19187 YPL079W_16_406631_407534_INTRON_12_432 intron 34.130307 208.56327 34.130307 175.432963 104.781635 2.020285171 0.087892 15 73 SH5810 5810 snR35 snR35 236 253 34.997303 157.061891 96.029597 1.982405106 0.275383 15 74 SH13679 13679 MT ORF 5 (hypothetical) 5' 30.68353 170.166913 30.68353 140.483383 85.5834565 1.932389823 0.112115 15 75 SH9692 9692 RUF4 RUF4 236 255 30.532789 163.681934 97.1073615 1.987252154 -0.021678 15 76 SH20399 20399 YFR024C-A spliced 30.398627 178.011255 104.204941 2.017888312 -0.115175 15 77 SH7028 7028 snR62 5' 34.369662 172.035172 103.202417 2.013689869 0.129267 15 78 SH19043 19043 YOR234C_15_779404_778554_INTRON_20_546 intron 32.240166 214.753307 32.240166 183.513141 107.8766535 2.032927466 -0.056342 15 79 SH15126 15126 MT tRNA Phe 5' / tRNA 32.179427 226.100205 32.179427 194.920778 113.5501025 2.055187531 -0.160367 15 80 SH12570 12570 MT_15S MT_15S 32.139073 207.735899 32.139073 176.596826 104.3679495 2.018567151 -0.002991 15 81 SH4292 4292 telomerase RNA telomerase 496 517 30.082102 151.533592 90.807847 1.958123379 0.009966 15 82 SH16010 16010 YDL137W_4_216158_217074_INTRON_1_332 intron 34.100509 230.865001 34.100509 197.764492 115.9325005 2.064205203 -0.126228 15 83 SH10187 10187 RUF6 RUF6 781 800 34.052194 190.659869 112.3560315 2.050596391 -0.055307 15 84 SH20425 20425 YGL031C spliced 38.0256 196.391105 117.2083525 2.068958561 -0.033972 15 85 SH10287 10287 RUF7 RUF7 46 68 29.871438 163.082438 96.476938 1.984423511 -0.064118 15 86 SH3953 3953 RNase MRP RNaseMRP 181 195 33.795491 153.281538 93.5385145 1.970990469 0.234813 15 87 SH20913 20913 YLR333C spliced 31.685898 186.98307 109.334484 2.03875716 -0.108725 15 88 SH4350 4350 telomerase RNA telomerase 786 808 37.574713 201.01497 119.2948415 2.076621664 -0.093093 15 89 SH15297 15297 MT 9S rRNA 3' 27.521569 155.142506 27.521569 128.620937 78.071253 1.89249115 -0.044877 15 90 SH12654 12654 MT_15S MT_15S 33.404052 205.163145 33.404052 172.759093 103.0815725 2.013181035 0.088044 15 91 SH5807 5807 snR35 snR35 221 240 31.359295 169.336792 100.3480435 2.001508909 -0.006255 15 92 SH21260 21260 YPL079W spliced 37.252991 201.650424 119.4517075 2.077192362 -0.106051 15 93 SH13649 13649 MT ATP6 ATP6 37.224636 191.917937 37.224636 155.693301 96.4589685 1.984342613 0.393285 15 94 SH15921 15921 YDL083C_4_307788_306925_INTRON_25_456 3' exon 31.290978 207.561613 31.290978 177.270635 104.2808065 2.018204381 -0.056853 15 95 SH5990 5990 snR36 3' 29.339257 147.830554 88.5849055 1.947359726 -0.021964 15 96 SH6895 6895 snR56 3' 31.370608 145.620657 88.4956325 1.946921838 0.12925 15 97 SH11491 11491 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4341 4354 29840.56649 23138.13352 26489.35 4.423071302 -0.041615 15 98 SH1411 1411 Leu1 3' flank 33.568112 142.843419 88.2057655 1.945496973 0.285358 15 99 SH19559 19559 CBP1 2.2 29.710411 123.562738 76.6365745 1.884436084 0.145762 15 100 SH8332 8332 snoRNA cluster4 intergenic/snR53 35.904665 189.705308 35.904665 154.800643 95.352654 1.979332785 0.337966 15 101 SH16535 16535 YER131W_5_423587_424307_INTRON_1_361 intron 32.036903 198.468464 32.036903 167.431561 99.734232 1.998844248 0.045204 15 102 SH1327 1327 Ile3 tRNA 16 31 32.201868 156.718715 94.4602915 1.975249281 0.121985 15 103 SH10174 10174 RUF6 RUF6 716 728 36.471491 172.168675 104.320083 2.018367924 0.199063 15 104 SH1719 1719 Leu6 3' flank 34.574356 167.67543 101.124893 2.004858075 0.179695 16 2 SH10051 10051 RUF6 RUF6 101 118 31.084784 201.905798 116.495291 2.066308371 -0.261238 16 3 SH8909 8909 LSR1 / U2 RNA 3' 30.036848 132.214942 81.125895 1.909159501 0.114525 16 4 SH17932 17932 YLR093C_12_327416_326514_INTRON_17_157 exon/intron 30.077629 174.569423 30.077629 145.491794 87.7847115 1.943418886 0.042618 16 5 SH15456 15456 YBL087C_2_60732_59815_INTRON_43_546 intron 30.115668 169.796302 30.115668 140.680634 85.398151 1.931448468 0.071679 16 6 SH12028 12028 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7026 7046 30.151613 144.668828 87.4102205 1.941562216 0.052312 16 7 SH1131 1131 Gly4 3' flank 30.186069 177.128971 103.65752 2.015600814 -0.123244 16 8 SH16024 16024 YDL189W_4_122079_123590_INTRON_1_99 intron/exon 32.402907 219.878512 32.402907 188.475605 110.439256 2.043123472 -0.095336 16 9 SH3470 3470 Trp1 3' flank 32.438063 151.1498 91.7939315 1.962813971 0.168503 16 10 SH20476 20476 YGL189C spliced 32.473832 188.972846 110.723339 2.044239174 -0.097163 16 11 SH19306 19306 YPL198W_16_173151_174701_INTRON_12_420 intron 32.510264 207.056301 32.510264 175.546037 104.0281505 2.017150877 0.024539 16 12 SH6330 6330 snR42 3' 32.546708 185.248115 108.8974115 2.037017557 -0.060885 16 13 SH19338 19338 YPL241C_16_96258_95372_INTRON_26_105 intron 32.581624 216.363984 32.581624 184.78236 108.681992 2.03615759 -0.055352 16 14 SH17307 17307 YHR203C_8_505526_504472_INTRON_15_283 intron 30.417212 196.088819 30.417212 166.671607 98.5444095 1.993631991 -0.047158 16 15 SH6629 6629 snR48 5' 32.636487 136.160918 84.3987025 1.92633577 0.26576 16 16 SH18330 18330 YML094W_13_82275_82849_INTRON_17_99 intron 30.452222 177.914708 30.452222 148.462486 89.457354 1.951616048 0.051931 16 17 SH3476 3476 Tyr1 5' flank 54.697767 195.910572 125.3041695 2.097965522 0.202323 16 18 SH20252 20252 YDR381W spliced 30.438613 187.37081 108.9047115 2.037046669 -0.16478 16 19 SH14700 14700 MT tRNA thr2 5' / tRNA 30.410295 200.449248 30.410295 171.038953 100.724624 2.003135655 -0.073863 16 20 SH15120 15120 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 3' 30.368716 174.375464 30.368716 145.006748 87.687732 1.942938837 0.065311 16 21 SH6260 6260 snR42 snR42 81 98 32.504561 167.417658 99.9611095 1.999831068 0.072379 16 22 SH12302 12302 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.62584 206.931877 34.62584 173.306037 103.9659385 2.016891078 0.125743 16 23 SH19728 19728 Negative Control 36.735365 178.790576 107.7629705 2.032469554 0.144014 16 24 SH18243 18243 YML026C_13_223828_222987_INTRON_48_448 3' exon 36.658347 247.755783 36.658347 212.097436 124.3778915 2.09474319 -0.230207 16 25 SH20664 20664 YIL052C spliced 40.938306 207.983454 124.46088 2.095032867 -0.119174 16 26 SH13602 13602 MT ATP8/AAP1 ATP8 30.021453 178.577166 30.021453 149.555713 89.788583 1.953221118 0.016421 16 27 SH19946 19946 YBL040C spliced 32.152146 162.891624 97.521885 1.989102087 0.079846 16 28 SH4596 4596 U3b (snR17b) 3' 29.972107 148.756993 89.36455 1.951165273 0.017345 16 29 SH3911 3911 RNase MRP 5' 32.142615 140.843713 86.493164 1.936981784 0.206723 16 30 SH247 247 Arg3 3' flank 30.005245 164.809609 97.407427 1.988592072 -0.063377 16 31 SH21891 21891 copy of SH18801 30.049355 140.876599 85.462977 1.931778017 0.065951 16 32 SH15389 15389 YBL040C_2_142830_142074_INTRON_23_119 intron 32.278247 215.280968 32.278247 184.002721 108.140484 2.033988309 -0.059424 16 33 SH7967 7967 snoRNA cluster 2 5' 36.702799 190.970494 36.702799 155.267695 95.985247 1.982204487 0.376005 16 34 SH1867 1867 Leu9 tRNA 76 90 30.224083 187.162914 108.6934985 2.036203568 -0.176874 16 35 SH1671 1671 Leu6 5' flank 30.279057 141.900839 86.089948 1.934952445 0.076344 16 36 SH8793 8793 LSR1 / U2 RNA U2 606 625 32.519024 147.181461 89.8502425 1.953519254 0.195229 16 37 SH13104 13104 MT COX1 COX1ai3 32.569695 202.005637 32.569695 170.435942 101.5028185 2.006478102 0.057968 16 38 SH20532 20532 YGR148C spliced 32.619889 177.311786 104.9658375 2.021047975 0.015693 16 39 SH18264 18264 YML056C_13_164176_162194_INTRON_461_868 intron 30.471339 180.662731 30.471339 151.191392 90.8313655 1.958235843 0.038478 16 40 SH577 577 Gln1 5' flank 54.826617 208.598239 131.712428 2.119626756 0.06602 16 41 SH10948 10948 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1626 1644 37.186419 159.656302 98.4213605 1.993089364 0.349639 16 42 SH2156 2156 Met2 5' flank 30.594837 184.395143 107.49499 2.031388224 -0.138946 16 43 SH13161 13161 MT COX1 intronic 30.607067 222.912364 30.607067 193.305297 111.956182 2.049048079 -0.206335 16 44 SH16156 16156 YDR129C_4_715372_713333_INTRON_22_132 exon/intron 30.592196 227.831543 30.592196 198.239347 114.4157715 2.058485893 -0.249449 16 45 SH16 16 Ala1 5' flank 34.957551 175.69923 105.3283905 2.022545448 0.114022 16 46 SH13828 13828 MT COB Cytbi2 30.467967 202.514059 30.467967 173.046092 101.7570295 2.007564421 -0.082174 16 47 SH4429 4429 telomerase RNA telomerase 1181 1203 28.171861 141.579868 84.8758645 1.928784211 -0.073809 16 48 SH16363 16363 YEL012W_5_131772_132551_INTRON_6_128 intron 32.416961 229.076363 32.416961 197.659402 115.0381815 2.060842008 -0.1751 16 49 SH649 649 Gln2 tRNA 31 47 279.727663 800.939777 540.33372 2.732662071 -0.712584 16 50 SH21666 21666 copy of SH9401 34.263816 189.453791 111.8588035 2.04867017 -0.037177 16 51 SH20869 20869 YLR128W spliced 31.933363 180.428113 106.180738 2.02604574 -0.039188 16 52 SH2732 2732 Pro5 tRNA-intron 41 56 31.765987 173.551902 102.6589445 2.011396795 -0.007148 16 53 SH6619 6619 snR48 5' 29.47749 131.164777 80.3211335 1.904829829 0.08115 16 54 SH1444 1444 Leu2 5' flank - tRNA9 9 35.702374 178.284603 106.9934885 2.029357348 0.114628 16 55 SH10787 10787 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 821 840 1034.056529 1822.965432 1428.510981 3.154883583 -0.392136 16 56 SH12922 12922 MT COX1 COX1ai2 31.269433 172.112453 31.269433 141.84302 86.5562265 1.937298315 0.143838 16 57 SH8592 8592 snR19 / U1 RNA U1 456 472 30.190058 148.0524 89.121229 1.949981167 0.036228 16 58 SH11680 11680 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5286 5299 16378.63624 16608.62161 16493.62892 4.217316219 -0.292178 16 59 SH3518 3518 Tyr1 3' flank 31.330503 181.171655 106.251079 2.026333349 -0.076609 16 60 SH10416 10416 RUF8 RUF8 6 23 31.424334 173.791882 102.608108 2.01118168 -0.028767 16 61 SH9278 9278 RUF1 5' 29.404505 179.724301 104.564403 2.019383862 -0.187062 16 62 SH4712 4712 snR4 snR4 96 112 31.618048 153.205386 92.411717 1.965727039 0.104423 16 63 SH21046 21046 YMR142C spliced 31.682299 178.79428 105.2382895 2.022173781 -0.042315 16 64 SH293 293 Arg4 61-72 + 3' flank 61 3' flank 28.509137 152.73829 90.6237135 1.957241854 -0.107904 16 65 SH8973 8973 snR17a / U3a U3a 151 169 29.564424 157.947941 93.7561825 1.971999916 -0.059643 16 66 SH872 872 Glu2 3' flank 31.648697 190.670983 111.15984 2.045947913 -0.143091 16 67 SH2631 2631 Pro3 3' flank 29.444524 131.380718 80.412621 1.905324218 0.077511 16 68 SH12710 12710 MT ORF 8 (hypothetical) ORF8 29.348763 203.364323 29.348763 175.01556 102.1821615 2.009375085 -0.163635 16 69 SH20671 20671 YIL069C spliced 33.458854 179.429262 106.444058 2.027121423 0.026082 16 70 SH16152 16152 YDR092W_4_629869_630598_INTRON_31_298 3' exon 29.116973 226.250424 29.116973 198.133451 113.625212 2.055474707 -0.307753 16 71 SH18595 18595 YNL069C_14_494998_493953_INTRON_29_477 intron 28.989543 180.34639 28.989543 152.356847 90.673195 1.957478919 -0.071199 16 72 SH9232 9232 snR6 / U6 RNA U6 31 50 92.896649 288.36559 190.6311195 2.280193798 -0.130833 16 73 SH6211 6211 snR40 3' 30.800769 134.06393 82.4323495 1.916097678 0.156597 16 74 SH14747 14747 MT ORF11; tRNA Leu; tRNA Gln 5' / orf11 30.664945 165.486112 30.664945 135.821167 83.243056 1.920348016 0.13714 16 75 SH7922 7922 snoRNA cluster1 snR72 30.539697 178.365337 30.539697 148.82564 89.6826685 1.952708522 0.055905 16 76 SH1739 1739 Leu7 5' flank - tRNA6 6 292.417252 367.880705 330.1489785 2.518709958 0.651378 16 77 SH173 173 Arg2 5' flank 30.343336 170.675574 100.509455 2.002206918 -0.075822 16 78 SH4065 4065 SRP RNA SRP RNA 216 237 32.316868 176.313954 104.315411 2.018348474 0.00895 16 79 SH1441 1441 Leu2 5' flank 34.30352 191.308568 112.806044 2.052332369 -0.052229 16 80 SH3442 3442 Trp1 tRNA 41 57 32.22648 168.478115 100.3522975 2.00152732 0.049902 16 81 SH14076 14076 MT COB Cytbi4 30.155797 198.512687 30.155797 169.35689 99.7563435 1.998940522 -0.079532 16 82 SH13792 13792 MT COB intronic 30.10838 187.341898 30.10838 158.233518 94.170949 1.973916947 -0.02327 16 83 SH18032 18032 YLR316C_12_766358_765266_INTRON_230_285 intron 32.066285 207.42369 32.066285 176.357405 104.211845 2.017917085 -0.005852 16 84 SH1183 1183 His1 3' flank 31.972794 172.980962 102.476878 2.010625886 0.008331 16 85 SH15641 15641 YBR186W_2_600511_602318_INTRON_1552_1664 intron/exon 31.858037 218.607599 31.858037 187.749562 109.8037995 2.040617368 -0.109138 16 86 SH17340 17340 YIL018W_9_316766_317930_INTRON_5_404 intron 31.728897 223.2569 31.728897 192.528003 112.12845 2.049715819 -0.156414 16 87 SH20703 20703 YJL001W spliced 31.594961 166.442999 99.01898 1.995718448 0.025253 16 88 SH15283 15283 MT 9S rRNA 9S 37.431473 258.592285 37.431473 222.160812 129.7961425 2.113261786 -0.323615 16 89 SH11666 11666 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5216 5229 35.310331 176.557137 105.933734 2.025034281 0.117831 16 90 SH5012 5012 snR10 snR10 91 110 29.27717 144.550852 86.914011 1.939089793 -0.008942 16 91 SH15741 15741 YCR028C-A_3_173432_172942_INTRON_243_325 intron 29.201841 181.176319 29.201841 152.974478 91.0881595 1.959461927 -0.059334 16 92 SH10118 10118 RUF6 RUF6 436 452 33.073683 192.064753 112.569218 2.051419649 -0.102623 16 93 SH13008 13008 MT COX1 COX1ai2 33.032999 214.104556 33.032999 182.071557 107.552278 2.031619613 -0.013932 16 94 SH3384 3384 Thr4 tRNA 6 22 33.018459 178.418116 105.7182875 2.02415012 0.019746 16 95 SH21597 21597 copy of SH6473 34.997412 177.370503 106.1839575 2.026058908 0.099412 16 96 SH10991 10991 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1841 1860 14719.61447 8890.250945 11804.93271 4.072063516 0.563735 16 97 SH4068 4068 SRP RNA SRP RNA 231 248 33.165056 168.080403 100.6227295 2.002696094 0.105971 16 98 SH10319 10319 RUF7 RUF7 206 222 36.249323 207.734621 121.991972 2.086331252 -0.190114 16 99 SH20345 20345 YER093C-A spliced 37.399746 195.705997 116.5528715 2.066522978 -0.038102 16 100 SH6592 6592 snR47 snR47 66 85 578.775244 783.039284 680.907264 2.833087967 0.227065 16 101 SH15856 15856 YDL079C_4_314747_312950_INTRON_413_704 exon/intron 31.741967 225.796223 31.741967 195.054256 113.3981115 2.054605822 -0.177919 16 102 SH12377 12377 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.946629 188.591526 35.946629 153.644897 94.795763 1.976788927 0.347764 16 103 SH7879 7879 snoRNA cluster1 snR73 32.052474 173.380528 32.052474 142.328054 87.190264 1.940467993 0.192402 16 104 SH18300 18300 YML073C_13_124172_123227_INTRON_16_430 intron 32.193406 219.095757 32.193406 187.902351 110.0478785 2.041581675 -0.097966 17 2 SH10437 10437 RUF8 RUF8 111 130 30.136273 180.753964 105.4451185 2.023026479 -0.146913 17 3 SH9864 9864 RUF5-1 RUF5-1 126 147 27.986368 174.057345 101.0218565 2.004415345 -0.252157 17 4 SH19603 19603 AEP2/ATP13 2.1 30.214118 161.644437 95.9292775 1.981951174 -0.033271 17 5 SH13890 13890 MT COB intronic 30.250998 184.841726 30.250998 155.590728 92.920863 1.968113235 0.000182 17 6 SH13356 13356 MT COX1 intronic 30.286622 213.094042 30.286622 183.80742 107.047021 2.029574586 -0.15463 17 7 SH13259 13259 MT COX1 COX1-ai4 28.130871 185.165109 28.130871 158.034238 93.0825545 1.968868293 -0.163236 17 8 SH18797 18797 YNL301C_14_64561_63569_INTRON_113_544 intron 30.352111 214.425659 30.352111 185.073548 107.7128295 2.032267434 -0.157567 17 9 SH874 874 Glu2 3' flank 32.574664 196.253189 114.4139265 2.05847889 -0.157239 17 10 SH17112 17112 YHR001W-A_8_107819_108115_INTRON_7_69 3' exon 34.79766 223.28207 34.79766 189.48441 112.141035 2.04976456 -0.018929 17 11 SH3986 3986 RNase MRP 3' 30.426039 146.020673 88.223356 1.945583574 0.06358 17 12 SH3111 3111 Ser4 5' flank 30.441873 160.1974 95.3196365 1.979182378 -0.010401 17 13 SH1236 1236 Ile1 3' flank 32.650217 185.740242 109.1952295 2.038203665 -0.061558 17 14 SH15148 15148 MT tRNA Thr1 reverse complement tRNA 31.554845 174.190066 31.554845 143.635221 87.595033 1.942479481 0.152523 17 15 SH17486 17486 YJL024C_10_396288_395627_INTRON_23_99 intron 32.649257 218.862449 32.649257 187.213192 109.9312245 2.041121066 -0.074922 17 16 SH14328 14328 MT VAR1 includes 5’ processing site VAR1 28.24159 174.385828 28.24159 147.144238 87.692914 1.942964502 -0.098644 17 17 SH9890 9890 RUF5-1 RUF5-1 256 275 28.2166 119.793484 74.005042 1.869261309 0.065341 17 18 SH15034 15034 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 301.819546 850.010081 301.819546 549.190535 425.5050405 2.628904709 0.010116 17 19 SH16167 16167 YDR139C_4_733917_733611_INTRON_150_222 intron 30.314904 177.970019 30.314904 148.655115 89.4850095 1.951750289 0.041501 17 20 SH2527 2527 Pro1 3' flank 32.431066 183.469077 107.9500715 2.033222934 -0.048865 17 21 SH21848 21848 copy of SH17383 32.348476 174.93485 103.641663 2.015534373 0.018756 17 22 SH15952 15952 YDL130W_4_229906_230527_INTRON_115_415 5' exon 43.138268 240.065392 43.138268 197.927124 120.532696 2.081104871 0.025496 17 23 SH19116 19116 YPL031C_16_493033_492014_INTRON_18_119 exon/intron 30.002837 181.799884 30.002837 152.797047 91.399942 1.96094592 -0.002235 17 24 SH13075 13075 MT COX1 COX1ai3 29.92217 184.771501 29.92217 155.849331 92.8857505 1.967949094 -0.023846 17 25 SH6792 6792 snR50 3' 27.698397 137.707124 82.7027605 1.917520006 -0.087891 17 26 SH12072 12072 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7246 7264 29.797733 186.847025 108.322379 2.03471819 -0.201716 17 27 SH8963 8963 snR17a / U3a U3a 101 115 56.714168 230.70357 143.708869 2.157483571 -0.122812 17 28 SH10783 10783 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 801 816 72.941822 234.615594 153.778708 2.186896208 0.05167 17 29 SH10257 10257 RUF6 3' 34.0862 177.218392 105.652296 2.023878939 0.069256 17 30 SH19170 19170 YPL079W_16_406631_407534_INTRON_12_432 intron 30.908599 214.082059 30.908599 184.17346 107.5410295 2.03157419 -0.11865 17 31 SH20764 20764 YJR145C spliced 1011.301564 1481.498639 1246.400102 3.095657476 -0.09174 17 32 SH1418 1418 Leu1 3' flank 45.14988 185.887541 115.5187105 2.062652332 0.196264 17 33 SH7765 7765 snoRNA cluster1 snR76 32.220027 223.853228 32.220027 192.633201 112.426614 2.050869131 -0.138935 17 34 SH11198 11198 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2876 2894 32.296807 182.200765 107.248786 2.030392385 -0.042129 17 35 SH9341 9341 RUF1 RUF1 281 298 30.185509 151.320437 90.752973 1.957860861 0.018228 17 36 SH4408 4408 telomerase RNA telomerase 1076 1092 30.241632 142.150096 86.195864 1.935486427 0.072371 17 37 SH14953 14953 MT tRNA Met tRNA / 3' 30.293833 199.14265 30.293833 169.848817 100.071325 2.00030965 -0.073941 17 38 SH17123 17123 YHR010W_8_126513_127484_INTRON_32_592 intron 180.091755 586.114448 180.091755 407.022693 293.557224 2.467692772 -0.07719 17 39 SH16128 16128 YDR064W_4_579453_580447_INTRON_22_560 intron 32.594843 217.087233 32.594843 185.49239 109.0436165 2.037600247 -0.061338 17 40 SH2424 2424 Phe4 3' flank 32.653161 159.274098 95.9636295 1.982106665 0.131569 17 41 SH21448 21448 copy of SH168 32.705846 186.183409 109.4446275 2.039194447 -0.06354 17 42 SH6032 6032 snR37 snR37 76 95 30.538862 124.898701 77.7187815 1.890525983 0.193797 17 43 SH19366 19366 YPR028W_16_623522_624197_INTRON_52_184 intron 32.755684 201.941748 32.755684 170.186064 101.470874 2.006341401 0.070103 17 44 SH11108 11108 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2426 2439 15708.08394 14651.82595 15179.95495 4.181270483 -0.146954 17 45 SH12145 12145 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7611 7628 30.471805 161.815691 96.143748 1.982921048 -0.016504 17 46 SH16812 16812 YGL178W_7_167356_170575_INTRON_4_643 5' exon 30.377393 194.563699 30.377393 165.186306 97.7818495 1.990258247 -0.040512 17 47 SH10386 10386 RUF7 3' 33.526972 170.366162 101.946567 2.008372606 0.112536 17 48 SH15766 15766 YCR097W_3_293828_294314_INTRON_106_159 5' exon 30.09943 179.476458 30.09943 150.377028 90.238229 1.955390563 0.017368 17 49 SH6803 6803 snR52 5' 32.092206 173.679177 102.8856915 2.012354981 0.011207 17 50 SH10946 10946 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1616 1629 46.974416 192.955391 119.9649035 2.079054209 0.136185 17 51 SH9810 9810 RUF4 3' 31.709796 172.507169 102.1084825 2.009061822 -0.004323 17 52 SH11009 11009 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1931 1944 18498.61584 19136.02033 18817.31809 4.274557726 -0.359721 17 53 SH514 514 Asp2 3' flank 31.345023 185.047776 108.1963995 2.034212809 -0.104126 17 54 SH4349 4349 telomerase RNA telomerase 781 798 33.294246 185.880704 109.587475 2.03976092 -0.039434 17 55 SH5521 5521 snR32 3' 30.0305 148.030402 89.030451 1.949538573 0.025351 17 56 SH15109 15109 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " intronic 443.802646 994.634459 443.802646 551.831813 497.8172295 2.697069924 0.471443 17 57 SH11890 11890 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6336 6353 242.003173 400.862311 321.432742 2.507090113 0.284046 17 58 SH16542 16542 YER133W_5_432491_433954_INTRON_178_702 5' exon 60.437548 274.917103 60.437548 215.479555 137.9585515 2.139748626 0.070614 17 59 SH9928 9928 RUF5-1 RUF5-1 446 463 31.143663 194.958609 113.051136 2.053274931 -0.199886 17 60 SH11078 11078 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2276 2293 2100.485286 1943.576593 2022.03094 3.305787797 0.436851 17 61 SH5090 5090 snR11 snR11 51 67 28.225341 143.370358 85.7978495 1.933476403 -0.079608 17 62 SH8015 8015 snoRNA cluster 2 intergenic 27.266308 157.291529 27.266308 131.025221 79.1457645 1.898427678 -0.07939 17 63 SH6940 6940 snR58 snR58 61 77 35.83885 179.929813 107.8843315 2.032958375 0.103698 17 64 SH6957 6957 snR58 3' 31.615781 140.090986 85.8533835 1.933757415 0.176767 17 65 SH15426 15426 YBL072C_2_89435_88518_INTRON_1_308 intron 29.475037 182.591731 29.475037 154.116694 91.7958655 1.962823121 -0.046035 17 66 SH15457 15457 YBL087C_2_60732_59815_INTRON_43_546 intron 29.422997 205.47219 29.422997 177.049193 103.236095 2.013831569 -0.17065 17 67 SH9062 9062 snR14 / U4 RNA 5' 27.224402 149.748948 88.486675 1.946877876 -0.189574 17 68 SH18701 18701 YNL130C_14_381156_379555_INTRON_30_470 intron 29.235857 197.389278 29.235857 169.153421 99.194639 1.996488201 -0.13836 17 69 SH7887 7887 snoRNA cluster1 snR73/intergenic 29.119691 186.742196 29.119691 158.622505 93.871098 1.972531898 -0.094551 17 70 SH10366 10366 RUF7 RUF7 441 457 35.281144 193.179879 114.2305115 2.057782121 -0.051065 17 71 SH20217 20217 YDR064W spliced 29.92071 141.306008 85.613359 1.932541537 0.054544 17 72 SH6411 6411 snR45 5' 28.762957 132.424094 80.5935255 1.906300154 0.022023 17 73 SH16641 16641 YFR024C-A_6_203420_201947_INTRON_48_165 intron/exon 28.654084 179.31546 28.654084 151.661376 90.15773 1.955002968 -0.091669 17 74 SH1842 1842 Leu9 5' flank 30.615901 188.128268 109.3720845 2.038906489 -0.16018 17 75 SH14043 14043 MT COB Cytbi4 32.579278 244.051317 32.579278 212.472039 122.5256585 2.088227045 -0.314743 17 76 SH9789 9789 RUF4 RUF4 721 742 59.258131 248.583935 153.921033 2.187297969 -0.242051 17 77 SH841 841 Glu2 5' flank 32.43455 177.036872 104.735711 2.020094785 0.011486 17 78 SH15779 15779 YDL012C_4_431513_431104_INTRON_46_131 intron/exon 30.344218 194.487831 30.344218 165.143613 97.7439155 1.990089732 -0.042292 17 79 SH19822 19822 Negative Control 34.396263 177.28967 105.8429665 2.024662003 0.079425 17 80 SH1701 1701 Leu6 tRNA 71 83 30.279908 165.132827 97.7063675 1.989922868 -0.046191 17 81 SH10707 10707 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 421 437 30.23967 178.79479 104.51723 2.019187891 -0.129438 17 82 SH5572 5572 snR33 snR33 146 165 30.180768 136.929252 83.55501 1.921972496 0.097289 17 83 SH2614 2614 Pro3 tRNA 21 36 46.348742 162.879061 104.6139015 2.019589399 0.51355 17 84 SH7635 7635 snR189 3' 36.049551 141.621912 88.8357315 1.948587683 0.435895 17 85 SH18591 18591 YNL050C_14_534978_534075_INTRON_18_108 3' exon 43674.8885 74693.89881 43674.8885 31020.01031 37347.44941 4.572260948 -0.012693 17 86 SH14915 14915 MT tRNA Tyr tRNA 39.720138 204.984245 39.720138 166.264107 102.9921225 2.012804008 0.359561 17 87 SH286 286 Arg4 26-40 26 40 38.517042 144.130761 91.3239015 1.960584457 0.54182 17 88 SH21861 21861 copy of SH18011 31.381471 160.38655 95.8840105 1.981746191 0.050238 17 89 SH16881 16881 YGL189C_7_148970_148233_INTRON_1_368 exon/intron 35.184158 219.249971 35.184158 185.065813 110.1249855 2.041885864 0.034119 17 90 SH10156 10156 RUF6 RUF6 626 647 31.111622 171.503818 101.30772 2.005642541 -0.033998 17 91 SH8007 8007 snoRNA cluster 2 intergenic 31.007548 181.474949 31.007548 151.467401 91.2374745 1.960173255 0.073203 17 92 SH5070 5070 snR11 5' 28.974313 133.270721 81.122517 1.909141417 0.032476 17 93 SH21341 21341 YPR098C spliced 28.921109 125.175564 77.0483365 1.886763267 0.079638 17 94 SH10305 10305 RUF7 RUF7 136 151 30.8398 178.369706 104.604753 2.019551418 -0.090283 17 95 SH923 923 Glu3 3' flank 28.893837 143.847621 86.370729 1.936366585 -0.032899 17 96 SH13664 13664 MT ATP6 ATP6 30.874043 188.084254 30.874043 158.210211 94.542127 1.975625369 0.028965 17 97 SH8502 8502 snR19 / U1 RNA U1 6 24 127.736988 307.433156 217.585072 2.337629096 0.065103 17 98 SH16079 16079 YDR025W_4_491510_492319_INTRON_46_384 intron 31.038804 197.860447 31.038804 167.821643 99.4302235 1.997518416 -0.016327 17 99 SH6121 6121 snR39B 5' 33.132018 186.879389 110.0057035 2.041415203 -0.054328 17 100 SH1937 1937 Lys1 3' flank 33.28307 147.77245 90.52776 1.956781774 0.240178 17 101 SH18568 18568 YNL012W_14_609682_611661_INTRON_106_189 intron 33.444602 191.197121 33.444602 158.752519 96.0985605 1.982716882 0.179671 17 102 SH14064 14064 MT COB Cytbi4 29.602848 183.090132 29.602848 154.487284 92.045066 1.964000513 -0.039001 17 103 SH5718 5718 snR34 snR34 511 530 35.786575 198.138222 116.9623985 2.068046266 -0.096196 17 104 SH4462 4462 telomerase RNA 3' 32.902891 204.702356 118.8026235 2.074826031 -0.226616 18 2 SH6883 6883 snR56 snR56 46 63 30.227983 173.036241 101.632112 2.007030951 -0.096899 18 3 SH12730 12730 MT COX1 Exon1 30.266401 160.328835 30.266401 131.062434 80.6644175 1.906682002 0.137383 18 4 SH9773 9773 RUF4 RUF4 641 658 30.304565 187.395424 108.8499945 2.036828411 -0.173165 18 5 SH7129 7129 snR63 snR63 151 167 39.140312 191.100574 115.120443 2.061152452 0.045945 18 6 SH4496 4496 U3b (snR17b) U3b 36 56 30.379683 165.607199 97.993441 1.991197008 -0.042956 18 7 SH16995 16995 YGR118W_7_726968_727725_INTRON_66_385 intron 37.014034 206.742288 37.014034 170.728254 103.871144 2.016494915 0.23093 18 8 SH5462 5462 snR32 5' 28.247686 137.039427 82.6435565 1.917208998 -0.042746 18 9 SH7404 7404 snR69 5' 32.670802 184.941289 108.8060455 2.036653026 -0.053529 18 10 SH15670 15670 YBR191W_2_606228_607098_INTRON_12_399 exon/intron 30.488002 173.55716 30.488002 144.069158 87.27858 1.940907672 0.078702 18 11 SH7168 7168 snR64 5' 32.699007 152.66487 92.6819385 1.966995109 0.177051 18 12 SH2266 2266 Phe2 5' flank 30.498066 158.585642 94.541854 1.975624115 0.001617 18 13 SH17919 17919 YLR061W_12_263195_263949_INTRON_13_401 3' exon 30.489933 224.180127 30.489933 194.690194 112.5900635 2.051500064 -0.222975 18 14 SH421 421 Asp1 5' flank 32.672234 189.595221 111.1337275 2.045845881 -0.095415 18 15 SH4851 4851 snR8 snR8 36 52 66.85262 227.800606 147.326613 2.168281205 0.037174 18 16 SH4563 4563 U3b (snR17b) U3b 371 387 56.827352 207.973696 132.400524 2.121889704 0.099272 18 17 SH9275 9275 RUF1 5' 30.359346 174.741821 102.5505835 2.010938136 -0.098758 18 18 SH4027 4027 SRP RNA SRP RNA 26 42 32.483683 193.729332 113.1065075 2.053487592 -0.138747 18 19 SH21837 21837 copy of SH16602 30.221655 138.467908 84.3447815 1.926058218 0.091433 18 20 SH20494 20494 YGL251C spliced 30.13492 142.55543 86.345175 1.936238074 0.062708 18 21 SH10001 10001 RUF5-1 3' 30.039858 187.151415 108.5956365 2.035812375 -0.188241 18 22 SH15130 15130 MT tRNA Phe tRNA 34.264526 190.429459 34.264526 157.164933 95.7147295 1.980978776 0.23516 18 23 SH21850 21850 copy of SH17600 31.997782 157.340128 94.668955 1.976207583 0.106079 18 24 SH20392 20392 YFL039C spliced 31.902293 171.251914 101.5771035 2.006795825 0.014411 18 25 SH12969 12969 MT COX1 COX1ai2 29.680725 162.011797 29.680725 133.331072 81.5058985 1.911189039 0.082855 18 26 SH18286 18286 YML067C_13_140214_139063_INTRON_32_124 intron 29.629027 160.306234 29.629027 131.677207 80.653117 1.906621156 0.08891 18 27 SH15724 15724 YBR255C-A_2_727032_726576_INTRON_64_157 intron 31.742587 178.637328 31.742587 147.894741 89.818664 1.953366591 0.14116 18 28 SH194 194 Arg2 3' flank 29.613842 135.032376 82.323109 1.915521764 0.068223 18 29 SH1660 1660 Leu5 3' flank 31.794074 185.400956 108.597515 2.035819888 -0.090304 18 30 SH7313 7313 snR66 snR66 56 70 91.392881 296.938632 194.1657565 2.288172639 -0.202734 18 31 SH8901 8901 LSR1 / U2 RNA U2 1146 1161 89.341022 194.026546 141.683784 2.151320147 0.610722 18 32 SH6862 6862 snR56 5' 27.737632 120.356125 74.0468785 1.869506755 0.026247 18 33 SH316 316 Arg5 5' flank 29.982077 182.975666 106.4788715 2.02726344 -0.168915 18 34 SH12062 12062 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7196 7213 30.060251 170.287607 100.173929 2.000754708 -0.091032 18 35 SH9082 9082 snR14 / U4 RNA U4 26 42 47.564857 207.942465 127.753661 2.106373354 -0.024175 18 36 SH6231 6231 snR42 5' 30.182855 163.543175 96.863015 1.986157983 -0.04488 18 37 SH155 155 Arg1 3' flank 32.417214 182.754754 107.585984 2.031755696 -0.042794 18 38 SH16510 16510 YER117W_5_396765_397649_INTRON_43_513 intron 32.472383 207.437251 32.472383 175.964868 104.2186255 2.017945341 0.019938 18 39 SH14195 14195 MT COB Exon6 32.53023 176.272002 32.53023 144.741772 88.636001 1.947610154 0.209484 18 40 SH17582 17582 YJL191W_10_73786_74610_INTRON_11_418 intron 32.588833 203.968014 32.588833 172.379181 102.484007 2.010656097 0.047547 18 41 SH2952 2952 Ser1 5' flank - tRNA9 9 31.542188 167.143123 99.3426555 1.997135765 0.017863 18 42 SH20102 20102 YDL061C spliced 32.677288 190.074528 111.375908 2.046791258 -0.09949 18 43 SH6901 6901 snR56 3' 30.484434 174.537012 102.510723 2.010769297 -0.08988 18 44 SH9993 9993 RUF5-1 771-775 + 3' 771 35.956232 186.996071 111.4761515 2.047181967 0.033201 18 45 SH9754 9754 RUF4 RUF4 546 558 32.582687 171.198047 101.890367 2.008133127 0.05418 18 46 SH19738 19738 Negative Control 32.46728 171.092331 101.7798055 2.007661617 0.048175 18 47 SH21839 21839 copy of SH17169 32.314434 180.586515 106.4504745 2.027147602 -0.026458 18 48 SH771 771 Gln4 3' flank 387.897649 682.263748 535.0806985 2.728419285 -0.045389 18 49 SH939 939 Gly1 5' flank 29.781553 140.708169 85.244861 1.930668207 0.04803 18 50 SH16584 16584 YFL034C-A_6_64931_64242_INTRON_13_333 exon/intron 33.856352 192.264444 33.856352 159.408092 96.632222 1.985121966 0.198358 18 51 SH1336 1336 Ile3 tRNA-intron 61 75 37.876393 178.569146 108.2227695 2.034318644 0.170436 18 52 SH2919 2919 Pro8 3' flank 31.295996 151.784761 91.5403785 1.961612704 0.090723 18 53 SH8033 8033 snoRNA cluster 2 snR55 41.593464 235.109894 41.593464 194.51643 118.054947 2.072084191 0.043333 18 54 SH6390 6390 snR43 191-209 + 3' 191 28.855627 140.924491 84.890059 1.928856835 -0.019686 18 55 SH1187 1187 His1 3' flank 32.893938 175.744235 104.3190865 2.018363775 0.0407 18 56 SH16564 16564 YER133W_5_432491_433954_INTRON_178_702 intron 49.443606 249.769188 49.443606 201.325582 125.384594 2.098244178 0.0732 18 57 SH12632 12632 MT_15S MT_15S 28.68034 164.295679 28.68034 136.615339 82.6478395 1.917231505 -0.008318 18 58 SH9080 9080 snR14 / U4 RNA U4 16 33 43.285315 201.161953 122.223634 2.087155192 -0.009502 18 59 SH20174 20174 YDL137W spliced 30.921044 197.785041 114.3530425 2.058247724 -0.232769 18 60 SH10276 10276 RUF7 5' - 7 -9 7 31.05961 182.29421 106.67691 2.028070427 -0.099118 18 61 SH992 992 Gly2 5' flank 29.101324 143.616082 86.358703 1.936306111 -0.016574 18 62 SH2093 2093 Lys4 3' flank 31.323276 150.985219 91.1542475 1.95977691 0.09681 18 63 SH1597 1597 Leu4 3' flank 29.29226 180.586474 104.939367 2.02093844 -0.199074 18 64 SH3479 3479 Tyr1 5' flank 35.676454 192.171737 113.9240955 2.056615589 -0.031786 18 65 SH17656 17656 YKL002W_11_437416_438182_INTRON_61_128 5' exon 33.540705 187.944248 33.540705 155.403543 94.472124 1.97530368 0.206698 18 66 SH4206 4206 telomerase RNA telomerase 66 87 29.253575 122.02607 75.6398225 1.878750501 0.124264 18 67 SH21202 21202 YOL127W spliced 37.593243 176.180906 106.8870745 2.028925191 0.194451 18 68 SH21284 21284 YPL143W spliced 33.255621 194.86469 114.0601555 2.057133959 -0.120473 18 69 SH9628 9628 RUF4 5' 34.170083 154.125805 94.147944 1.97381084 0.249839 18 70 SH2956 2956 Ser1 tRNA 11 25 1959.329317 2422.364101 2190.846709 3.340611992 0.000621 18 71 SH3469 3469 Trp1 3' flank 59.938424 190.709674 125.324049 2.098034418 0.324363 18 72 SH605 605 Gln1 66-72 + 3' flank 66 3' flank 47.270107 168.233845 107.751976 2.032425243 0.451843 18 73 SH6389 6389 snR43 snR43 186 202 36.796945 172.427151 104.612048 2.019581704 0.207174 18 74 SH11484 11484 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4306 4321 148.742544 247.50304 198.122792 2.29693444 0.625163 18 75 SH18785 18785 YNL301C_14_64561_63569_INTRON_113_544 exon/intron 32.532094 170.511588 32.532094 138.979494 85.755794 1.933263472 0.242513 18 76 SH10884 10884 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1306 1321 48591.49958 35047.26408 41819.38183 4.621377609 -0.067823 18 77 SH2306 2306 Phe2 3' flank 39.64255 180.14807 109.89531 2.040979158 0.183507 18 78 SH13878 13878 MT COB intronic 32.444298 209.087384 32.444298 177.643086 105.043692 2.021369978 0.006077 18 79 SH21199 21199 YOL121C spliced 38.578311 180.739662 109.6589865 2.040044228 0.157114 18 80 SH13653 13653 MT ATP6 ATP6 30.362921 171.863299 30.362921 142.500378 86.4316495 1.936672801 0.078883 18 81 SH7342 7342 snR68 5' 30.325232 127.880698 79.102965 1.898192762 0.160625 18 82 SH16639 16639 YFR024C-A_6_203420_201947_INTRON_48_165 intron 30.261041 221.486274 30.261041 192.225233 111.243137 2.046273227 -0.210501 18 83 SH2309 2309 Phe2 3' flank 30.165022 152.009504 91.087263 1.959457653 0.013139 18 84 SH15816 15816 YDL061C_4_341182_340627_INTRON_1_408 3' exon 34.085582 229.080498 34.085582 195.994916 115.040249 2.060849813 -0.106962 18 85 SH19674 19674 SIR1 2.4 33.910159 180.741287 107.325723 2.030703823 0.029838 18 86 SH17175 17175 YHR021C_8_148660_147862_INTRON_4_553 intron 584.025124 1361.176559 584.025124 778.151435 681.0882795 2.833203407 0.248601 18 87 SH3930 3930 RNase MRP RNaseMRP 66 83 33.512789 165.907452 99.7101205 1.998739241 0.138689 18 88 SH3050 3050 Ser3 5' flank 32.325707 193.945285 113.135496 2.053598885 -0.146467 18 89 SH11997 11997 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6871 6884 50.894757 205.531344 128.2130505 2.107932233 0.047412 18 90 SH1474 1474 Leu2 3' flank 31.010993 179.354985 105.182989 2.021945508 -0.085532 18 91 SH2668 2668 Pro4 tRNA 6 22 243.382134 397.579753 320.4809435 2.505802211 0.304851 18 92 SH14632 14632 MT 21S rRNA Sce1 endonuc 28.831415 183.639227 28.831415 155.807812 92.3196135 1.965293978 -0.100694 18 93 SH19704 19704 Negative Control 52.073515 214.921392 133.4974535 2.125472981 -0.035034 18 94 SH8074 8074 snoRNA cluster 2 snR61 42.272994 238.27979 42.272994 197.006796 119.639895 2.077876023 0.023987 18 95 SH8551 8551 snR19 / U1 RNA U1 251 263 46.132297 208.848406 127.4903515 2.105477319 -0.05339 18 96 SH17519 17519 YJL136C_10_156971_156248_INTRON_25_484 intron 32.581367 232.846836 32.581367 201.265469 116.923418 2.067901503 -0.199548 18 97 SH13645 13645 MT ATP6 ATP6 30.699277 175.481781 30.699277 145.782504 88.2408905 1.945669882 0.083457 18 98 SH8645 8645 snR19 / U1 RNA 3' 28.84124 147.306234 88.073737 1.944846424 -0.055252 18 99 SH50 50 Ala1 3' flank 29.921928 164.092234 97.007081 1.986803437 -0.065614 18 100 SH8014 8014 snoRNA cluster 2 intergenic 32.992642 210.450981 32.992642 178.458339 105.7254905 2.024179709 0.018428 18 101 SH600 600 Gln1 tRNA 41 55 46.99867 219.878619 133.4386445 2.125281622 -0.155649 18 102 SH6153 6153 snR39B 3' 33.301877 144.792374 89.0471255 1.949619905 0.257854 18 103 SH18378 18378 YMR116C_13_500687_499455_INTRON_538_810 intron 29.460873 166.897749 29.460873 138.436876 83.9488745 1.924014878 0.037911 18 104 SH5115 5115 snR11 snR11 176 196 29.579216 149.670765 89.6249905 1.952429123 -0.015 19 2 SH11322 11322 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3496 3513 28215.27035 26362.35991 27288.81513 4.435984679 -0.321458 19 3 SH13132 13132 MT COX1 COX1ai3 30.308229 197.495129 30.308229 168.1869 99.2475645 1.996719858 -0.063063 19 4 SH19999 19999 YBR078W spliced 39.160862 188.021486 113.591174 2.055344588 0.081693 19 5 SH6966 6966 snR60 5' 45.824739 182.666487 114.245613 2.057839532 0.245114 19 6 SH19567 19567 AEP2/ATP13 0.6 30.428333 123.705402 77.0668675 1.886867707 0.193912 19 7 SH10881 10881 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1291 1306 2349.430178 2351.587324 2350.508751 3.371161872 0.28695 19 8 SH19254 19254 YPL129W_16_305297_306136_INTRON_10_114 3' exon 34.904457 227.496139 34.904457 193.591682 114.2480695 2.05784887 -0.063297 19 9 SH17495 17495 YJL041W_10_365480_368069_INTRON_2_119 intron 32.724216 202.886233 32.724216 171.162017 101.9431165 2.008357906 0.062497 19 10 SH726 726 Gln4 5' flank 32.737881 174.050839 103.39436 2.014496849 0.046272 19 11 SH7684 7684 snoRNA cluster1 intergenic 37.1524 243.968494 37.1524 207.816094 122.484247 2.088080237 -0.175571 19 12 SH1165 1165 His1 tRNA 46 60 1856.116676 2058.485197 1957.300937 3.291657604 0.183602 19 13 SH10111 10111 RUF6 RUF6 401 417 30.502644 157.003832 93.753238 1.971986276 0.01005 19 14 SH12725 12725 MT COX1 5' / exon1 30.469456 212.257602 30.469456 182.788146 106.628801 2.027874526 -0.137729 19 15 SH12079 12079 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7281 7299 32.621227 179.470894 106.0460605 2.02549454 -0.004681 19 16 SH18750 18750 YNL162W_14_331319_332151_INTRON_5_516 intron 34.755049 215.806833 34.755049 182.051784 108.4034165 2.03504297 0.047128 19 17 SH2136 2136 Met1 66-73 + 3' flank 66 32.489089 147.949263 90.219176 1.955298856 0.189102 19 18 SH12149 12149 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7631 7648 166.392656 371.237854 268.815255 2.429453911 -0.000689 19 19 SH19839 19839 Negative Control 34.481303 180.405037 107.44317 2.031178813 0.052988 19 20 SH9114 9114 snR14 / U4 RNA 3' 34.365695 167.036431 100.701063 2.003034055 0.17878 19 21 SH11543 11543 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4601 4617 21535.62377 17648.77918 19592.20147 4.292083238 -0.034139 19 22 SH6446 6446 snR45 snR45 76 92 70.890988 213.28147 142.086229 2.152551988 0.221156 19 23 SH10412 10412 RUF8 5' - 5 -14 5 31.859124 195.953504 113.906314 2.056547798 -0.181267 19 24 SH2414 2414 Phe4 3' flank 29.625677 148.358994 88.9923355 1.949352604 -0.004611 19 25 SH3866 3866 RNaseP RNaseP 296 312 38.097661 165.216954 101.6573075 2.007138603 0.320869 19 26 SH13255 13255 MT COX1 COX1-ai4 29.51376 192.972372 29.51376 164.458612 96.986186 1.986709881 -0.095924 19 27 SH6300 6300 snR42 snR42 281 297 33.763196 151.373711 92.5684535 1.966463008 0.245751 19 28 SH11060 11060 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2186 2204 46.611889 177.058078 111.8349835 2.048577678 0.326599 19 29 SH15286 15286 MT 9S rRNA 9S 31.717462 176.261999 31.717462 145.544537 88.6309995 1.947585647 0.152494 19 30 SH15721 15721 YBR255C-A_2_727032_726576_INTRON_64_157 intron 29.663922 193.61902 29.663922 164.955098 97.30951 1.988155286 -0.087834 19 31 SH17252 17252 YHR097C_8_298611_297387_INTRON_126_249 intron 29.761149 220.907784 29.761149 192.146635 110.953892 2.045142541 -0.232429 19 32 SH11593 11593 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4851 4864 2336.225729 2183.014606 2259.620168 3.354035442 0.395881 19 33 SH6316 6316 snR42 3' 29.95531 137.225077 83.5901935 1.922155331 0.079815 19 34 SH18685 18685 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.034791 204.562667 30.034791 175.527876 102.7813335 2.011914248 -0.12341 19 35 SH5740 5740 snR34 3' 49.704066 210.861245 130.2826555 2.114886602 -0.025133 19 36 SH824 824 Glu1 3' flank 30.150396 161.422926 95.786661 1.981305035 -0.036542 19 37 SH3802 3802 RNaseP 5' flank 56.44212 222.326243 139.3841815 2.144213489 -0.047804 19 38 SH1403 1403 Leu1 tRNA 86 102 391.385591 743.107343 567.246467 2.7537718 -0.175236 19 39 SH3944 3944 RNase MRP RNaseMRP 136 157 32.475398 151.304116 91.889757 1.963267103 0.170064 19 40 SH16087 16087 YDR025W_4_491510_492319_INTRON_46_384 intron 30.337088 175.137586 30.337088 145.800498 88.068793 1.944822044 0.058727 19 41 SH988 988 Gly2 5' flank 500.689482 803.027819 651.8586505 2.814153433 0.004293 19 42 SH20808 20808 YKL186C spliced 30.407195 179.148983 104.778089 2.020270473 -0.121121 19 43 SH14824 14824 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly 32.602968 196.471355 32.602968 164.868387 98.7356775 1.994474111 0.09362 19 44 SH16432 16432 YER074W_5_306319_307192_INTRON_4_469 intron 30.37248 167.546997 30.37248 138.174517 84.2734985 1.925691023 0.10357 19 45 SH16036 16036 YDL191W_4_117665_118518_INTRON_4_494 intron 30.296528 202.483004 30.296528 173.186476 101.741502 2.007498145 -0.093546 19 46 SH13948 13948 MT COB Cytbi3 30.179973 171.546722 30.179973 142.366749 86.273361 1.935876717 0.066886 19 47 SH14488 14488 MT 21S rRNA 21S rRNA3 30.027509 178.75987 30.027509 149.732361 89.879935 1.95366275 0.015884 19 48 SH13494 13494 MT COX1 Exon 5g / intronic 40.632871 200.665923 40.632871 161.033052 100.8329615 2.003602523 0.441328 19 49 SH16655 16655 YFR031C-A_6_221405_220494_INTRON_5_151 3' exon 57.559415 263.017077 57.559415 206.457662 132.0085385 2.120602023 0.124543 19 50 SH12587 12587 MT_15S MT_15S 29.434614 203.550328 29.434614 175.115714 102.275164 2.009770185 -0.158756 19 51 SH14706 14706 MT tRNA thr2 tRNA / 3' 29.219512 200.209051 29.219512 171.989539 100.6045255 2.002617517 -0.154165 19 52 SH3963 3963 RNase MRP RNaseMRP 231 247 29.009713 140.968566 84.9891395 1.929363432 -0.008714 19 53 SH20941 20941 YLR426W spliced 28.815871 140.870218 84.8430445 1.928616244 -0.02229 19 54 SH14889 14889 MT tRNA Ala 3' 28.651087 180.599723 28.651087 152.948636 90.7998615 1.958085186 -0.098711 19 55 SH7202 7202 snR64 snR64 76 90 34.71258 177.408996 106.060788 2.025554849 0.089256 19 56 SH10469 10469 RUF8 RUF8 271 292 90.522235 253.339952 171.9310935 2.235354425 0.094501 19 57 SH11381 11381 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3791 3808 48553.68953 39983.59877 44268.64415 4.646096221 -0.277865 19 58 SH8698 8698 LSR1 / U2 RNA U2 131 146 308.08778 444.019715 376.0537475 2.575249921 0.39249 19 59 SH3265 3265 Thr2 5' flank 32.755364 164.279817 98.5175905 1.993513782 0.105971 19 60 SH14201 14201 MT COB exon6/3' 30.828205 199.015496 30.828205 169.187291 100.007748 2.000033648 -0.037288 19 61 SH20340 20340 YER093C-A spliced 28.886417 174.547144 101.7167805 2.007392606 -0.190596 19 62 SH19889 19889 Positive Control 5 39.477273 166.970068 103.2236705 2.013779298 0.34567 19 63 SH15448 15448 YBL087C_2_60732_59815_INTRON_43_546 intron 29.075954 176.234324 29.075954 148.15837 88.617162 1.947517837 -0.042676 19 64 SH4249 4249 telomerase RNA telomerase 281 302 29.105972 123.257039 76.1815055 1.881849551 0.105543 19 65 SH2010 2010 Lys3 5' flank - tRNA12 12 29.089276 131.987346 80.538311 1.906002518 0.048357 19 66 SH21132 21132 YNL147W spliced 351.991149 500.226852 426.1090005 2.629520708 0.352512 19 67 SH8725 8725 LSR1 / U2 RNA U2 266 278 95.244092 264.737518 179.990805 2.255250319 0.057807 19 68 SH19875 19875 Negative Control 33.006701 172.615758 102.8112295 2.012040553 0.069972 19 69 SH10383 10383 RUF7 3' 32.883469 181.562615 107.223042 2.030288124 -0.014643 19 70 SH10565 10565 RUF8 RUF8 751 763 54.54495 184.463834 119.504392 2.077383867 0.332722 19 71 SH8918 8918 LSR1 / U2 RNA 3' 30.602338 187.583489 109.0929135 2.03779654 -0.155905 19 72 SH15133 15133 MT tRNA Phe 3' 28.469131 190.338664 28.469131 162.869533 95.669332 1.980772742 -0.162845 19 73 SH15655 15655 YBR189W_2_604466_605466_INTRON_8_420 intron 33.544874 212.698604 33.544874 180.15373 106.849302 2.028771689 0.022358 19 74 SH20192 20192 YDL219W spliced 32.477481 181.612772 107.0451265 2.0295669 -0.029991 19 75 SH279 279 Arg4 5' flank - tRNA6 5' flank 6 28.360789 166.549926 97.4553575 1.988805719 -0.18886 19 76 SH10577 10577 RUF8 RUF8 811 828 32.4537 133.044482 82.749091 1.917763232 0.27264 19 77 SH20741 20741 YJL191W spliced 28.366085 132.534188 80.4501365 1.905526785 -0.007555 19 78 SH11132 11132 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2546 2563 656.8759 419.911067 538.3934835 2.731099795 1.406161 19 79 SH21609 21609 copy of SH7090 32.48926 164.936917 98.7130885 1.99437474 0.086667 19 80 SH5529 5529 snR33 5' 30.434567 183.375068 106.9048175 2.028997276 -0.143128 19 81 SH15945 15945 YDL125C_4_239605_239018_INTRON_98_208 intron 33.479105 222.090851 33.479105 189.611746 111.5454255 2.047451764 -0.066337 19 82 SH12657 12657 MT_15S MT_15S 28.300549 160.045306 28.300549 132.744757 80.522653 1.905918075 -0.013628 19 83 SH5732 5732 snR34 3' 30.243357 143.321351 86.782354 1.938431426 0.066097 19 84 SH201 201 Arg2 3' flank 36.195256 193.650551 114.9229035 2.06040659 -0.038267 19 85 SH9160 9160 snR7 U5 RNA U5 71 88 31.955481 183.962514 107.9589975 2.033258843 -0.071094 19 86 SH18309 18309 YML073C_13_124172_123227_INTRON_16_430 intron 33.759746 192.711616 33.759746 159.95187 96.855808 1.986125668 0.189557 19 87 SH10164 10164 RUF6 RUF6 666 680 39.519144 193.955678 116.737411 2.067210057 0.019228 19 88 SH21857 21857 copy of SH17802 204.78357 384.74892 294.766245 2.469477749 0.165751 19 89 SH6582 6582 snR47 snR47 16 32 31.134331 150.183146 90.6587385 1.957409672 0.088569 19 90 SH6954 6954 snR58 3' 29.97592 147.332669 88.6542945 1.947699778 0.025403 19 91 SH19765 19765 Negative Control 67.902702 198.133125 133.0179135 2.123910131 0.338547 19 92 SH20550 20550 YGR225W spliced 30.658252 140.982542 85.820397 1.933590519 0.107615 19 93 SH2051 2051 Lys4 5' flank 28.623192 132.328012 80.475602 1.905664234 0.01233 19 94 SH3897 3897 RNase MRP 5' 40.112216 211.033795 125.5730055 2.098896289 -0.164681 19 95 SH19152 19152 YPL075W_16_412249_415357_INTRON_9_759 intron 607.446362 1274.506418 607.446362 668.060056 637.753209 2.804652653 0.546851 19 96 SH15325 15325 YAL003W_1_142172_143158_INTRON_81_446 intron 28.515516 155.547658 28.515516 128.032142 78.273829 1.893616579 0.031892 19 97 SH14308 14308 MT VAR1 includes 5’ processing site VAR1 28.549731 163.073006 28.549731 135.523275 82.036503 1.914007139 -0.011676 19 98 SH18959 18959 YOL127W_15_80347_81189_INTRON_14_427 intron 29.580487 165.582155 29.580487 137.001668 83.2910775 1.92059848 0.054566 19 99 SH8202 8202 snoRNA cluster 3; intergenic 63.719609 292.936589 63.719609 230.21698 146.9682945 2.167223654 -0.023973 19 100 SH11818 11818 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5976 5994 32.711895 159.946779 96.329337 1.983758571 0.130647 19 101 SH4327 4327 telomerase RNA telomerase 671 690 578.963051 961.771819 770.367435 2.886697916 -0.107452 19 102 SH16829 16829 YGL178W_7_167356_170575_INTRON_4_643 intron 31.034833 186.572659 31.034833 156.537826 93.7863295 1.972139539 0.048354 19 103 SH11752 11752 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5646 5664 9985.302142 3854.611496 6919.956819 3.840103384 1.391457 19 104 SH4412 4412 telomerase RNA telomerase 1096 1113 31.295275 150.473358 90.8843165 1.958488945 0.097705 20 2 SH9573 9573 RUF3 RUF3 251 267 36.896819 175.249795 106.073307 2.025606109 0.183021 20 3 SH12355 12355 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.311843 175.203657 30.311843 145.891814 88.1018285 1.944984922 0.056492 20 4 SH12701 12701 MT ORF 8 (hypothetical) ORF8 28.154978 171.236227 28.154978 144.081249 86.1181135 1.935094508 -0.08872 20 5 SH2701 2701 Pro4 3' flank 32.596012 162.520082 97.558047 1.989263098 0.107797 20 6 SH19827 19827 Negative Control 30.437593 146.197718 88.3176555 1.946047532 0.063387 20 7 SH3015 3015 Ser2 tRNA 36 53 30.476568 148.308678 89.392623 1.951301681 0.054429 20 8 SH12521 12521 MT_ORF6 + ORF7 (hypothetical) ORF6/7 30.50935 184.581934 30.50935 155.072584 92.790967 1.967505701 0.020532 20 9 SH11375 11375 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3761 3778 8160.186105 5635.850078 6898.018092 3.838724329 0.525805 20 10 SH8860 8860 LSR1 / U2 RNA U2 941 955 48.224185 202.58435 125.4042675 2.098312316 0.043307 20 11 SH5331 5331 snR30 snR30 506 522 32.74583 137.122181 84.9340055 1.929081606 0.267002 20 12 SH15170 15170 MT tRNA Val 3' 32.727158 239.594605 32.727158 207.867447 120.2973025 2.080255889 -0.263822 20 13 SH11860 11860 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6186 6202 31271.29858 27957.7609 29614.52974 4.471504841 -0.281344 20 14 SH6143 6143 snR39B snR39B 56 75 32.645376 152.310763 92.4780695 1.966038755 0.175526 20 15 SH20397 20397 YFR024C-A spliced 32.583693 192.23117 112.4074315 2.050795024 -0.121965 20 16 SH15978 15978 YDL136W_4_217600_218367_INTRON_4_408 intron 32.508639 228.608592 32.508639 197.099953 114.804296 2.05995814 -0.166934 20 17 SH20230 20230 YDR139C spliced 34.604327 200.166979 117.385653 2.06961502 -0.14215 20 18 SH7718 7718 snoRNA cluster1 snR77 34.496714 180.545769 34.496714 147.049055 90.7728845 1.957956136 0.315379 20 19 SH7165 7165 snR63 3' 34.377767 197.821904 116.0998355 2.064831604 -0.121131 20 20 SH10957 10957 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1671 1689 387.382089 491.450915 439.416502 2.642876363 0.498311 20 21 SH311 311 Arg4 3' flank 33.0459 191.665216 112.355558 2.050594561 -0.100116 20 22 SH12356 12356 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.853341 191.032149 31.853341 160.178808 96.0160745 1.982343946 0.079455 20 23 SH15994 15994 YDL136W_4_217600_218367_INTRON_4_408 3' exon 29.611439 203.115037 29.611439 174.503598 102.0575185 2.008845004 -0.144001 20 24 SH21413 21413 Ser3 spliced 31.661918 162.130858 96.896388 1.986307588 0.05588 20 25 SH19350 19350 YPL249C-A_16_76239_75699_INTRON_17_254 intron 31.600475 211.652613 31.600475 181.052138 106.3263065 2.026640728 -0.059899 20 26 SH11083 11083 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2301 2319 16358.89992 17043.53925 16701.21959 4.222748186 -0.334845 20 27 SH2671 2671 Pro4 tRNA 21 36 87.184638 184.945352 136.064995 2.13374641 0.687273 20 28 SH3976 3976 RNase MRP RNaseMRP 296 311 40.14594 209.391832 124.768886 2.096106298 -0.146326 20 29 SH6670 6670 snR48 3' 29.561184 186.480014 108.020599 2.033506581 -0.214618 20 30 SH21660 21660 copy of SH9190 27.516492 122.531256 75.023874 1.875199486 -0.005059 20 31 SH5049 5049 snR10 3' 34.059885 181.948456 108.0041705 2.033440526 0.023882 20 32 SH1986 1986 Lys2 3' flank 32.02367 161.085272 96.554471 1.984772389 0.083691 20 33 SH171 171 Arg2 5' flank 29.962098 151.873746 90.917922 1.958649501 -0.000145 20 34 SH14540 14540 MT 21S rRNA 21S rRNA3 27.871758 181.025907 27.871758 154.154149 91.0129535 1.959103208 -0.162675 20 35 SH17537 17537 YJL177W_10_90783_91654_INTRON_310_626 intron 32.269674 163.062575 32.269674 131.792901 82.0312875 1.913979528 0.26803 20 36 SH12641 12641 MT_15S MT_15S 30.140014 181.366033 30.140014 152.226019 91.1830165 1.959913955 0.010265 20 37 SH5876 5876 snR35 3' 60.790277 210.521839 135.656058 2.132439193 0.124529 20 38 SH8965 8965 snR17a / U3a U3a 111 130 30.209236 161.354138 95.781687 1.981282482 -0.03215 20 39 SH8776 8776 LSR1 / U2 RNA U2 521 537 34.614363 134.351607 84.482985 1.92676925 0.398703 20 40 SH801 801 Glu1 tRNA 21 37 43.421742 188.93386 116.177801 2.065123152 0.135695 20 41 SH14657 14657 MT 21S rRNA 21S rRNA4 32.501937 216.744378 32.501937 185.242441 108.872189 2.036916955 -0.062482 20 42 SH16229 16229 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 32.519519 197.384848 32.519519 165.865329 99.192424 1.996478503 0.082704 20 43 SH9937 9937 RUF5-1 RUF5-1 491 507 32.509889 176.758326 104.6341075 2.019673274 0.016922 20 44 SH378 378 Asn1 5' flank 30.277882 142.223526 86.250704 1.935762649 0.074492 20 45 SH19623 19623 RNA14 1.1 30.195933 134.950205 82.573069 1.916838426 0.109693 20 46 SH21855 21855 copy of SH17800 32.245839 140.747403 86.496621 1.936999142 0.213931 20 47 SH6195 6195 snR40 snR40 36 51 39.648087 193.93571 116.7918985 2.067412718 0.021419 20 48 SH7642 7642 snoRNA cluster1 5' 31.880259 199.23758 31.880259 168.357321 100.11879 2.000515592 0.030439 20 49 SH5954 5954 snR36 snR36 226 243 31.660191 170.848059 101.254125 2.005412725 0.002569 20 50 SH10860 10860 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1186 1204 59.036242 185.684373 122.3603075 2.08764056 0.372628 20 51 SH12885 12885 MT COX1 COX1ai1 31.187513 207.179752 31.187513 176.992239 104.089876 2.017408491 -0.061448 20 52 SH19633 19633 RNA14 2.2 28.86927 175.755798 102.312534 2.009928841 -0.198717 20 53 SH18504 18504 YMR194W_13_651144_651909_INTRON_17_479 intron 28.666129 185.787861 28.666129 158.121732 93.3939305 1.970318653 -0.124568 20 54 SH2016 2016 Lys3 tRNA-exon/intron 26 41 28.492184 142.55986 85.526022 1.932098273 -0.055373 20 55 SH62 62 Ala2 5' flank 42.720904 194.654261 118.6875825 2.074405284 0.057766 20 56 SH21579 21579 copy of SH5868 32.373653 195.804872 114.0892625 2.057244773 -0.160795 20 57 SH3902 3902 RNase MRP 5' 32.360228 151.194034 91.777131 1.962734477 0.16328 20 58 SH4391 4391 telomerase RNA telomerase 991 1010 32.414674 147.110317 89.7624955 1.953094918 0.18895 20 59 SH15037 15037 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.469721 179.432971 30.469721 149.96325 90.2164855 1.955285905 0.044975 20 60 SH10691 10691 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 341 359 34.722862 159.330561 97.0267115 1.986891312 0.246095 20 61 SH3576 3576 Tyr2 3' flank 28.66259 148.450746 88.556668 1.947221268 -0.074369 20 62 SH21457 21457 copy of SH553 28.76693 122.967089 75.8670095 1.880052966 0.083397 20 63 SH7068 7068 snR62 3' 32.999179 163.803164 98.4011715 1.993000269 0.122787 20 64 SH3352 3352 Thr3 3' flank 30.944023 164.828184 97.8861035 1.990721041 -0.003758 20 65 SH5911 5911 snR36 snR36 11 32 28.8429 182.418803 105.6308515 2.023790781 -0.23823 20 66 SH10210 10210 RUF6 RUF6 896 908 78.914343 211.405593 145.159968 2.161846864 0.330505 20 67 SH20613 20613 YHR079C-A spliced 33.886419 202.998014 118.4422165 2.073506526 -0.187569 20 68 SH20096 20096 YDL029W spliced 30.674188 160.773387 95.7237875 1.981019874 0.002468 20 69 SH13551 13551 MT COX1 intronic 37.782405 223.23421 37.782405 186.451805 112.117105 2.049671875 0.074599 20 70 SH9077 9077 snR14 / U4 RNA U4 1 15 42.810287 194.028967 118.419627 2.073423689 0.066373 20 71 SH16958 16958 YGR029W_7_543547_544199_INTRON_87_169 intron/exon 32.445772 168.688149 32.445772 137.242377 84.8440745 1.928621517 0.247188 20 72 SH19543 19543 CBP1 1.2 28.299973 159.386379 93.843176 1.972402697 -0.1577 20 73 SH7299 7299 snR66 5' - 7 -14 7 30.31142 180.206716 105.259068 2.02225952 -0.132999 20 74 SH12868 12868 MT COX1 COX1ai1 30.303923 194.435687 30.303923 165.131764 97.7178435 1.989973874 -0.044703 20 75 SH15104 15104 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 30.31791 178.242755 30.31791 148.924845 89.6213775 1.952411615 0.040238 20 76 SH18554 18554 YMR230W_13_732413_733140_INTRON_53_462 3' exon 36.488089 203.666362 36.488089 168.178273 102.333181 2.010016474 0.23918 20 77 SH17166 17166 YHR016C_8_138446_136872_INTRON_48_215 intron 30.391446 216.334494 30.391446 186.943048 108.667247 2.036098665 -0.165357 20 78 SH19820 19820 Negative Control 48.936881 189.548261 119.242571 2.076431331 0.202277 20 79 SH2739 2739 Pro5 tRNA 76 88 55.187698 203.368135 129.2779165 2.111524344 0.126342 20 80 SH13444 13444 MT COX1 intronic 30.490058 236.405933 30.490058 206.915875 118.7029665 2.074461573 -0.325741 20 81 SH3568 3568 Tyr2 3' flank 30.476454 151.640572 91.058513 1.959320554 0.036423 20 82 SH2180 2180 Met2 tRNA 31 47 38.63103 173.495708 106.063369 2.025565418 0.247166 20 83 SH1031 1031 Gly2 3' flank 32.371348 169.620927 100.9961375 2.004304765 0.051419 20 84 SH15065 15065 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.190386 197.882095 30.190386 168.691709 99.4410475 1.99756569 -0.07339 20 85 SH7544 7544 snR79 snR79 61 77 34.063893 191.4606 112.7622465 2.052163719 -0.061967 20 86 SH19484 19484 ADH1 31.82862 141.444204 86.636412 1.937700458 0.182904 20 87 SH3702 3702 Val3 5' flank - tRNA8 8 29.607533 175.250211 102.428872 2.01042239 -0.148586 20 88 SH12043 12043 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7101 7118 309.036695 392.089448 350.5630715 2.544766165 0.607109 20 89 SH11843 11843 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6101 6114 10009.62735 8973.354261 9491.490806 3.977334431 0.049922 20 90 SH18135 18135 YLR406C_12_931752_931062_INTRON_58_406 intron 34.851265 234.807228 34.851265 200.955963 117.903614 2.071527117 -0.145687 20 91 SH2275 2275 Phe2 5' flank 32.693865 178.645396 105.6696305 2.023950189 0.005763 20 92 SH10524 10524 RUF8 RUF8 546 565 33.483782 183.08682 108.285301 2.034569508 -0.007078 20 93 SH18643 18643 YNL112W_14_413636_416278_INTRON_1274_2275 exon/intron 37.184241 222.906893 37.184241 186.722652 111.9534465 2.049037468 0.060147 20 94 SH10945 10945 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1611 1624 39.938735 178.752845 109.34579 2.038802067 0.205706 20 95 SH1372 1372 Leu1 5' flank 36.020401 176.498526 106.2594635 2.026367619 0.142242 20 96 SH4468 4468 telomerase RNA 3' 32.165722 160.271046 96.218384 1.983258059 0.097113 20 97 SH16166 16166 YDR139C_4_733917_733611_INTRON_150_222 exon/intron 32.182568 224.861072 32.182568 193.678504 112.930536 2.052811389 -0.149461 20 98 SH13603 13603 MT ATP8/AAP1 ATP8 30.322786 174.14507 30.322786 144.822284 87.572535 1.942367922 0.063202 20 99 SH15373 15373 YBL027W_2_168385_169338_INTRON_3_386 intron 30.406202 219.668306 30.406202 190.262104 110.334153 2.042709965 -0.187446 20 100 SH8465 8465 snoRNA cluster 5 3' 30.51231 168.772457 30.51231 139.260147 84.8862285 1.928837238 0.107145 20 101 SH1105 1105 Gly4 tRNA 1 13 968.881393 1547.047521 1257.964457 3.099668371 -0.216088 20 102 SH7507 7507 snR71 3' 30.758322 178.879283 104.8188025 2.020439194 -0.098127 20 103 SH9172 9172 snR7 U5 RNA U5 131 147 38.741459 213.050891 125.896175 2.100012535 -0.207287 20 104 SH2683 2683 Pro4 tRNA 81 95 38.913959 183.331672 111.1228155 2.045803237 0.132231 21 2 SH18137 18137 YLR406C_12_931752_931062_INTRON_58_406 intron 36.875941 233.014905 36.875941 197.138964 117.0074525 2.068213524 -0.063969 21 3 SH19954 19954 YBL050W spliced 106.198852 280.060773 193.1298125 2.285849319 0.055295 21 4 SH9690 9690 RUF4 RUF4 226 240 32.532571 182.265936 107.3992535 2.031001263 -0.034019 21 5 SH17328 17328 YIL004C_9_348502_347943_INTRON_12_142 intron/exon 4227.507637 6138.691084 4227.507637 1912.183447 3069.845542 3.487116525 1.384829 21 6 SH15434 15434 YBL072C_2_89435_88518_INTRON_1_308 intron 41.432995 240.710197 41.432995 200.277202 120.8550985 2.082264977 -0.025683 21 7 SH4190 4190 telomerase RNA 5' - 5 5 30.456699 131.344354 80.9005265 1.907951348 0.148909 21 8 SH8889 8889 LSR1 / U2 RNA U2 1086 1098 32.692392 176.784212 104.738302 2.020105529 0.023381 21 9 SH21140 21140 YNL162W spliced 37.128441 189.940386 113.5344135 2.055127521 0.021873 21 10 SH19452 19452 CYC1 30.523897 156.830538 93.6772175 1.971633982 0.01239 21 11 SH8361 8361 snoRNA cluster4 3' 30.51923 176.118305 30.51923 146.599075 88.5591525 1.947233452 0.066725 21 12 SH18364 18364 YMR079W_13_424988_426058_INTRON_10_165 5' exon 41.519918 209.128434 41.519918 168.608516 105.064217 2.021454828 0.360418 21 13 SH4872 4872 snR8 snR8 141 157 41.468875 167.057275 104.263075 2.018130529 0.379678 21 14 SH1143 1143 His1 5' flank 30.408621 159.802654 95.1056375 1.978206261 -0.010671 21 15 SH12487 12487 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 28.152856 151.036207 28.152856 123.883351 76.0181035 1.880917031 0.032867 21 16 SH11055 11055 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2161 2174 397.026544 479.374697 438.2006205 2.641672988 0.569749 21 17 SH4943 4943 snR9 snR9 121 137 32.343083 162.220929 97.282006 1.988032517 0.095106 21 18 SH17523 17523 YJL136C_10_156971_156248_INTRON_25_484 intron 30.060672 162.871497 30.060672 133.810825 81.9357485 1.913473425 0.106845 21 19 SH10251 10251 RUF6 3' 29.947875 155.749777 92.848826 1.967776417 -0.021546 21 20 SH3591 3591 Val1 5' flank 27.680626 132.640984 80.160805 1.90396207 -0.058531 21 21 SH11468 11468 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4226 4241 3998.855849 2888.96868 3443.912265 3.537052079 0.661248 21 22 SH2031 2031 Lys3 3' flank 29.61632 121.368338 75.492329 1.877902824 0.154089 21 23 SH5019 5019 snR10 snR10 126 143 31.659825 189.013749 110.336787 2.042720333 -0.127939 21 24 SH19319 19319 YPL198W_16_173151_174701_INTRON_12_420 intron/exon 27.338046 163.990102 27.338046 137.652056 82.495051 1.916427895 -0.114876 21 25 SH18531 18531 YMR230W_13_732413_733140_INTRON_53_462 5' exon 44.31341 250.613532 44.31341 207.300122 125.806766 2.099703998 -0.062211 21 26 SH16567 16567 YER133W_5_432491_433954_INTRON_178_702 intron 35.786415 226.370617 35.786415 191.584202 113.6853085 2.055704345 -0.02294 21 27 SH10522 10522 RUF8 RUF8 536 558 31.562527 192.847121 112.204824 2.050011529 -0.165507 21 28 SH16323 16323 YDR471W_4_1401759_1402553_INTRON_32_415 intron 33.752844 196.261397 33.752844 163.508553 98.6306985 1.994012109 0.16683 21 29 SH18929 18929 YOL121C_15_92849_92025_INTRON_21_410 intron 29.57838 213.556545 29.57838 184.978165 107.2782725 2.030511771 -0.205315 21 30 SH10006 10006 RUF5-1 3' 30.752893 171.209608 100.9812505 2.004240744 -0.053933 21 31 SH15070 15070 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 31.943821 215.137863 31.943821 184.194042 108.0689315 2.033700858 -0.073654 21 32 SH16154 16154 YDR129C_4_715372_713333_INTRON_22_132 5' exon 29.90025 219.028472 29.90025 190.128222 110.014236 2.041448887 -0.212983 21 33 SH3790 3790 RNaseP 5' flank 29.99227 137.46083 83.72655 1.922863196 0.081075 21 34 SH3778 3778 Val4 3' flank 32.233791 193.306366 112.7700785 2.052193883 -0.14431 21 35 SH2714 2714 Pro5 5' flank 30.113187 130.825998 80.4695925 1.905631802 0.128101 21 36 SH18773 18773 YNL265C_14_145280_144279_INTRON_28_132 5' exon 36.680029 245.877775 36.680029 210.197746 123.4388875 2.091451999 -0.209291 21 37 SH3886 3886 RNaseP 3' 30.16856 131.896397 81.0324785 1.908659123 0.12562 21 38 SH13804 13804 MT COB intronic 418.77134 1006.537874 418.77134 588.766534 503.768937 2.702231385 0.292789 21 39 SH8579 8579 snR19 / U1 RNA U1 391 407 234.363776 373.644488 304.004132 2.482879487 0.36983 21 40 SH17542 17542 YJL177W_10_90783_91654_INTRON_310_626 intron 38.967402 245.013396 38.967402 207.045994 123.006698 2.08992876 -0.138462 21 41 SH17075 17075 YGR225W_7_945138_946919_INTRON_1184_1276 intron 32.427205 189.652066 32.427205 158.224861 95.326033 1.97921152 0.125303 21 42 SH3929 3929 RNase MRP RNaseMRP 61 78 32.429427 152.653897 92.541662 1.966337295 0.159929 21 43 SH20044 20044 YBR189W spliced 41.150318 197.219994 119.185156 2.076222169 0.005361 21 44 SH20022 20022 YBR119W spliced 34.532782 192.037707 113.2852445 2.054173346 -0.053318 21 45 SH19873 19873 Negative Control 34.434214 192.408818 113.421516 2.054695448 -0.059545 21 46 SH1178 1178 His1 3' flank 36.46082 184.529332 110.495076 2.043342925 0.071981 21 47 SH11637 11637 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5071 5088 4454.762022 1317.717825 2886.239924 3.46033243 2.03818 21 48 SH11120 11120 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2486 2501 33.90991 176.861415 105.3856625 2.02278153 0.066447 21 49 SH3675 3675 Val2 3' flank 33.678302 148.310371 90.9943365 1.959014363 0.261734 21 50 SH18298 18298 YML073C_13_124172_123227_INTRON_16_430 intron 37.654842 226.032279 37.654842 189.377437 113.5161395 2.055057613 0.038298 21 51 SH2002 2002 Lys3 5' flank 31.082461 195.816059 113.44926 2.054801667 -0.209648 21 52 SH18612 18612 YNL069C_14_494998_493953_INTRON_29_477 intron 28.77003 178.473294 28.77003 150.703264 89.736647 1.952969838 -0.078225 21 53 SH1662 1662 Leu5 3' flank 32.689082 189.032209 110.8606455 2.044777403 -0.089779 21 54 SH11410 11410 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3936 3952 84.048955 234.742772 159.3958635 2.202477047 0.175621 21 55 SH3092 3092 Ser3 3' flank 30.287499 165.913337 98.100418 1.991670858 -0.050514 21 56 SH18315 18315 YML085C_13_99400_97941_INTRON_26_141 5' exon 34.268333 214.792324 34.268333 181.523991 107.896162 2.033005997 0.035133 21 57 SH11379 11379 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3781 3798 50389.79659 35926.22467 43158.01063 4.635061418 -0.059915 21 58 SH18663 18663 YNL112W_14_413636_416278_INTRON_1274_2275 intron 32.240327 183.157413 32.240327 151.917086 92.0787065 1.96415921 0.151712 21 59 SH18357 18357 YMR033W_13_337787_339276_INTRON_31_116 intron 32.326724 185.379198 32.326724 154.052474 93.189599 1.969367443 0.145958 21 60 SH4202 4202 telomerase RNA telomerase 46 60 38.591896 156.159094 97.375495 1.988449678 0.431455 21 61 SH20603 20603 YHR077C spliced 30.506648 162.057166 96.281907 1.983544684 -0.015341 21 62 SH17283 17283 YHR141C_8_382752_381991_INTRON_5_445 intron 32.662467 224.539066 32.662467 192.876599 112.769533 2.052191782 -0.124728 21 63 SH20469 20469 YGL187C spliced 30.662834 176.533946 103.59839 2.015353006 -0.090531 21 64 SH17644 17644 YJR145C_10_702761_701720_INTRON_15_270 intron 30.683161 208.085477 30.683161 178.402316 104.5427385 2.019293872 -0.099988 21 65 SH15157 15157 MT tRNA Val 5' 30.662217 196.44571 30.662217 166.783493 98.722855 1.994417706 -0.032842 21 66 SH20288 20288 YDR471W spliced 38.859351 144.839511 91.849431 1.96307647 0.553376 21 67 SH20122 20122 YDL079C spliced 32.582852 168.761411 100.6721315 2.002909264 0.068754 21 68 SH6941 6941 snR58 snR58 66 82 32.485709 191.190139 111.837924 2.048589097 -0.116409 21 69 SH21743 21743 copy of SH12553 28.302904 151.886254 90.094579 1.95469866 -0.118795 21 70 SH19253 19253 YPL129W_16_305297_306136_INTRON_10_114 intron/exon 34.345167 218.704611 34.345167 185.359444 109.8523055 2.040809176 0.002532 21 71 SH10713 10713 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 451 467 34.277198 163.833264 99.055231 1.995877415 0.193632 21 72 SH4042 4042 SRP RNA SRP RNA 101 121 30.170187 126.815718 78.4929525 1.894830665 0.156346 21 73 SH11721 11721 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5491 5504 299.913542 536.292076 418.102809 2.621283085 0.042333 21 74 SH8043 8043 snoRNA cluster 2 intergenic 30.17703 153.759586 30.17703 124.582556 77.379793 1.888627564 0.171 21 75 SH6127 6127 snR39B 5' 93.773711 280.179017 186.976364 2.27178671 -0.066616 21 76 SH7117 7117 snR63 snR63 91 112 30.277054 133.720368 81.998711 1.913807025 0.122478 21 77 SH17033 17033 YGR183C_7_859471_859058_INTRON_4_216 intron 30.34842 174.617671 30.34842 145.269251 87.8088355 1.943538218 0.062459 21 78 SH17669 17669 YKL006C-A_11_430270_429836_INTRON_37_177 intron 30.421845 163.765328 30.421845 134.343483 82.382664 1.915835832 0.128902 21 79 SH16354 16354 YDR500C_4_1450856_1450201_INTRON_8_396 intron 30.485556 166.553563 30.485556 137.068007 83.7767815 1.923123672 0.117662 21 80 SH4659 4659 snR3 3' 28.471193 127.410729 77.940961 1.891765756 0.032725 21 81 SH4492 4492 U3b (snR17b) U3b 16 37 31.562649 151.308113 91.435381 1.961114279 0.110879 21 82 SH6200 6200 snR40 snR40 61 78 34.609677 177.7102 106.1599385 2.025960658 0.082837 21 83 SH11392 11392 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3846 3864 12137.52308 6490.201498 9313.86229 3.969129812 0.814921 21 84 SH15427 15427 YBL072C_2_89435_88518_INTRON_1_308 intron 36.411758 184.334722 36.411758 148.922964 92.667361 1.966926795 0.403512 21 85 SH13779 13779 MT COB intronic 30.116517 194.512719 30.116517 165.396202 97.7563595 1.99014502 -0.058573 21 86 SH8494 8494 snR19 / U1 RNA 5' 29.916673 155.873278 92.8949755 1.967992225 -0.024351 21 87 SH12232 12232 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.697692 156.173913 27.697692 129.476221 78.5869565 1.89535047 -0.03725 21 88 SH7835 7835 snoRNA cluster1 snR74 32.447923 226.198054 32.447923 194.750131 113.599027 2.055374612 -0.148935 21 89 SH14412 14412 MT 21S rRNA 21S rRNA3 78.770122 331.129524 78.770122 253.359402 166.064762 2.220277487 -0.034439 21 90 SH13686 13686 MT ORF 5 (hypothetical) ORF5 29.021306 188.93881 29.021306 160.917504 94.969405 1.977583717 -0.113211 21 91 SH2978 2978 Ser1 3' flank 28.815761 138.789903 83.802832 1.923258695 -0.010704 21 92 SH1234 1234 Ile1 3' flank 32.489585 182.912935 107.70126 2.032220784 -0.041582 21 93 SH5917 5917 snR36 snR36 41 60 30.389789 152.109949 91.249869 1.96023225 0.02801 21 94 SH3245 3245 Thr1 3' flank 32.165294 187.612368 109.888831 2.040953553 -0.096406 21 95 SH14667 14667 MT 21S rRNA 21S rRNA4 30.158643 193.077652 30.158643 163.919009 97.038826 1.986945534 -0.048405 21 96 SH7593 7593 snR189 snR189 36 52 83.661192 195.666929 139.6640605 2.145084664 0.537558 21 97 SH10761 10761 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 691 704 35.802235 186.104874 110.9535545 2.04514122 0.040569 21 98 SH18176 18176 YLR448W_12_1028848_1029762_INTRON_16_399 intron 30.123539 163.154359 30.123539 134.03082 82.0771795 1.914222424 0.109965 21 99 SH18606 18606 YNL069C_14_494998_493953_INTRON_29_477 intron 30.185244 203.813919 30.185244 174.628675 102.4069595 2.010329472 -0.108851 21 100 SH8949 8949 snR17a / U3a U3a 31 50 32.186854 177.797981 104.9924175 2.021157936 -0.007102 21 101 SH7487 7487 snR71 snR71 51 70 30.374472 171.711582 101.043027 2.004506348 -0.080054 21 102 SH10048 10048 RUF6 RUF6 86 103 47.932336 230.151553 139.0419445 2.143145833 -0.242485 21 103 SH4490 4490 U3b (snR17b) U3b 6 23 30.596197 146.086984 88.3415905 1.946165214 0.074786 21 104 SH5509 5509 snR32 3' 30.70268 149.050009 89.8763445 1.9536454 0.06573 22 2 SH1947 1947 Lys2 5' flank 30.236109 150.213867 90.224988 1.955326833 0.02765 22 3 SH5172 5172 snR13 snR13 16 37 79.046387 255.254359 167.150373 2.22310735 -0.045836 22 4 SH521 521 Cys1 5' flank 32.500773 165.829904 99.1653385 1.996359899 0.081843 22 5 SH19189 19189 YPL079W_16_406631_407534_INTRON_12_432 intron/exon 36.935905 213.63748 36.935905 177.701575 107.31874 2.030675565 0.160845 22 6 SH14595 14595 MT 21S rRNA Sce1 endonuc 30.379067 221.438697 30.379067 192.05963 111.2193485 2.046180347 -0.204383 22 7 SH5435 5435 snR31 3' 30.415346 158.945288 94.680317 1.976259703 -0.005854 22 8 SH893 893 Glu3 5' flank 30.446569 193.999509 112.223039 2.050082025 -0.218683 22 9 SH17569 17569 YJL189W_10_75932_76473_INTRON_7_392 intron 30.46892 167.735499 30.46892 138.266579 84.3677495 1.926176465 0.109728 22 10 SH13805 13805 MT COB intronic 30.478769 195.820559 30.478769 166.34179 98.4102795 1.993040465 -0.041366 22 11 SH2222 2222 Phe1 5' flank - tRNA2 2 32.673099 142.877217 87.775158 1.94337162 0.229082 22 12 SH20000 20000 YBR078W spliced 34.848198 179.619501 107.2338495 2.030331897 0.073031 22 13 SH6769 6769 snR50 snR50 21 37 32.605232 194.596845 113.6010385 2.055382302 -0.141813 22 14 SH284 284 Arg4 16-30 16 30 32.543019 166.455856 99.4994375 1.997820626 0.080443 22 15 SH17388 17388 YIL069C_9_232366_231550_INTRON_4_412 intron 30.277428 184.258608 30.277428 154.98118 92.629304 1.966748401 0.005174 22 16 SH13101 13101 MT COX1 COX1ai3 32.365983 223.513139 32.365983 192.147156 112.2565695 2.050211766 -0.129258 22 17 SH18890 18890 YOL120C_15_94401_93394_INTRON_113_559 5' exon 30.083399 201.155179 30.083399 172.07178 101.0775895 2.004654876 -0.100183 22 18 SH2577 2577 Pro2 3' flank 29.969651 156.986541 93.478096 1.970709858 -0.026445 22 19 SH20894 20894 YLR287C-A spliced 32.005396 180.165905 106.0856505 2.025656644 -0.034035 22 20 SH14580 14580 MT 21S rRNA intronic 34.026973 256.942071 34.026973 223.915098 128.9710355 2.110492187 -0.398819 22 21 SH2240 2240 Phe1 tRNA 76 90 46.764989 194.980655 120.872822 2.082328662 0.109854 22 22 SH15602 15602 YBR119W_2_479296_480281_INTRON_9_97 5' exon 33.795669 221.811975 33.795669 189.016306 111.4059875 2.046908533 -0.049756 22 23 SH2903 2903 Pro8 tRNA 36 48 33.71332 201.969488 117.841404 2.071297908 -0.180129 22 24 SH10612 10612 RUF8 3' 37.912365 170.996807 104.454586 2.018927512 0.257004 22 25 SH5519 5519 snR32 3' 31.517969 176.498016 104.0079925 2.017066714 -0.038903 22 26 SH17567 17567 YJL189W_10_75932_76473_INTRON_7_392 intron 29.409959 206.389046 29.409959 177.979087 103.694523 2.015755818 -0.176801 22 27 SH5195 5195 snR13 3' 29.45389 157.743398 93.598644 1.971269557 -0.066367 22 28 SH18403 18403 YMR125W_13_517538_520445_INTRON_26_347 intron 31.656929 232.150746 31.656929 201.493817 116.575373 2.066606814 -0.235943 22 29 SH1606 1606 Leu4 3' flank 33.8983 178.54212 106.22021 2.026207156 0.050077 22 30 SH823 823 Glu1 3' flank 31.87674 170.557349 101.2170445 2.005253652 0.017042 22 31 SH20215 20215 YDR064W spliced 34.153396 206.405213 120.2793045 2.080190908 -0.218268 22 32 SH2840 2840 Pro7 tRNA 6 22 239.859372 473.949752 356.904562 2.552552099 -0.015005 22 33 SH18327 18327 YML094W_13_82275_82849_INTRON_17_99 exon/intron 32.203733 222.227055 32.203733 191.023322 111.6135275 2.047716834 -0.12538 22 34 SH8856 8856 LSR1 / U2 RNA U2 921 935 1776.738334 2788.618518 2282.678426 3.358444734 -0.348816 22 35 SH12543 12543 MT_ORF6 + ORF7 (hypothetical) ORF6/7 / 3' 30.140061 200.990116 30.140061 171.850055 100.995058 2.004300123 -0.095355 22 36 SH2704 2704 Pro5 5' flank 32.338995 147.528545 89.93377 1.953922799 0.1818 22 37 SH14876 14876 MT tRNA Ala 5' 30.170026 174.892959 30.170026 145.722933 87.9464795 1.944218459 0.047698 22 38 SH18881 18881 YNR053C_14_723108_721117_INTRON_811_1341 3' exon 34.531565 228.808374 34.531565 195.276809 114.904187 2.060335854 -0.089771 22 39 SH7671 7671 snoRNA cluster1 snR78 34.53302 187.941003 34.53302 154.407983 94.4705015 1.975296221 0.267731 22 40 SH2869 2869 Pro7 3' flank 30.174371 132.086419 81.130395 1.90918359 0.124904 22 41 SH15671 15671 YBR191W_2_606228_607098_INTRON_12_399 intron 32.348626 214.077315 32.348626 182.728689 107.5386575 2.03156461 -0.04509 22 42 SH11955 11955 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6661 6674 134.768144 331.439995 233.1040695 2.367549855 -0.0189 22 43 SH10021 10021 RUF6 5' 36.650316 173.68875 105.169533 2.021889945 0.19009 22 44 SH7708 7708 snoRNA cluster1 snR77 161.230663 527.325493 161.230663 367.09483 264.1627465 2.421871571 -0.01492 22 45 SH20189 20189 YDL219W spliced 32.138491 154.579978 93.3592345 1.970157282 0.131069 22 46 SH20104 20104 YDL061C spliced 32.010602 192.417525 112.2140635 2.050047289 -0.144857 22 47 SH15467 15467 YBL087C_2_60732_59815_INTRON_43_546 intron 31.851844 189.223832 31.851844 158.371988 95.111916 1.97823493 0.090892 22 48 SH7029 7029 snR62 5' 31.666548 171.585898 101.626223 2.007005785 -0.001434 22 49 SH12339 12339 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.460187 219.694419 31.460187 189.234232 110.3472095 2.042761355 -0.137484 22 50 SH17840 17840 YKR094C_11_618384_617630_INTRON_9_376 intron 31.238843 197.173901 31.238843 166.935058 99.0869505 1.996016463 0.001064 22 51 SH20027 20027 YBR119W spliced 31.009514 155.503416 93.256465 1.969678949 0.052031 22 52 SH19327 19327 YPL218W_16_138697_139408_INTRON_29_167 intron 28.708759 186.369742 28.708759 158.660983 93.684871 1.971669463 -0.124242 22 53 SH7599 7599 snR189 snR189 66 80 55.347904 192.91831 124.133107 2.093887626 0.244275 22 54 SH12104 12104 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7406 7422 38.567305 212.556441 125.561873 2.098857785 -0.204681 22 55 SH21378 21378 Lys3_4 spliced 40.417364 200.916232 120.666798 2.081587788 -0.047858 22 56 SH18262 18262 YML056C_13_164176_162194_INTRON_461_868 intron 32.154014 224.752148 32.154014 193.598134 112.876074 2.052601896 -0.149824 22 57 SH18219 18219 YML025C_13_225365_224406_INTRON_28_126 3' exon 50.400191 281.552428 50.400191 232.152237 141.276214 2.150069048 -0.225688 22 58 SH2609 2609 Pro3 5' flank - tRNA8 8 91.300781 268.676144 179.9884625 2.255244667 -0.010993 22 59 SH20009 20009 YBR082C spliced 34.212106 201.516219 117.8641625 2.071381775 -0.164846 22 60 SH11566 11566 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4716 4729 74.220943 224.322632 149.2717875 2.173977733 0.157667 22 61 SH16520 16520 YER131W_5_423587_424307_INTRON_1_361 5' exon 30.314973 240.160171 30.314973 210.845198 120.5800855 2.081275587 -0.364384 22 62 SH9972 9972 RUF5-1 RUF5-1 666 683 30.388002 169.790647 100.0893245 2.000387758 -0.067791 22 63 SH10651 10651 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 141 158 38.641252 185.419219 112.0302355 2.049335249 0.102596 22 64 SH7666 7666 snoRNA cluster1 snR78 30.447474 166.260591 30.447474 136.813117 83.6302955 1.922363631 0.11648 22 65 SH20737 20737 YJL191W spliced 32.475735 177.030631 104.753183 2.020167228 0.013066 22 66 SH2021 2021 Lys3 tRNA-intron/exon 51 67 57.056514 254.171913 155.6142135 2.192049262 -0.318939 22 67 SH3535 3535 Tyr2 5' flank 32.349186 171.762005 102.0555955 2.008836821 0.037394 22 68 SH15053 15053 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.230144 187.730629 30.230144 158.500485 94.3653145 1.974812392 -0.016259 22 69 SH20024 20024 YBR119W spliced 34.217788 200.44185 117.329819 2.069408401 -0.153086 22 70 SH3551 3551 Tyr2 tRNA-exon/intron 26 42 32.116648 162.937261 97.5269545 1.989124663 0.077496 22 71 SH12448 12448 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.092908 224.947445 34.092908 191.854537 112.9737225 2.052977439 -0.064416 22 72 SH13612 13612 MT ATP8/AAP1 3' 29.011156 183.661464 29.011156 155.650308 92.330732 1.965346279 -0.086977 22 73 SH2568 2568 Pro2 tRNA 76 88 52.340711 192.785212 122.5629615 2.088359246 0.207384 22 74 SH18233 18233 YML026C_13_223828_222987_INTRON_48_448 intron 32.084398 214.005271 32.084398 182.920873 107.5026355 2.031419111 -0.056689 22 75 SH5474 5474 snR32 snR32 31 50 30.117233 139.465319 84.791276 1.928351171 0.07855 22 76 SH11253 11253 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3151 3168 183.391431 381.808775 282.600103 2.451172316 0.056242 22 77 SH20888 20888 YLR275W spliced 32.331874 156.230105 94.2809895 1.974424132 0.13269 22 78 SH9775 9775 RUF4 RUF4 651 666 97.341483 257.523634 177.4325585 2.249033315 0.13196 22 79 SH17796 17796 YKL186C_11_93537_92746_INTRON_71_233 intron/exon 28.424892 176.079648 28.424892 148.654756 88.539824 1.947138654 -0.092978 22 80 SH2781 2781 Pro6 5' flank - tRNA10 10 223.18941 432.530864 327.860137 2.515688616 0.059029 22 81 SH7146 7146 snR63 snR63 236 253 34.698948 201.31124 118.005094 2.071900755 -0.152632 22 82 SH7190 7190 snR64 snR64 16 30 3215.291389 4511.363258 3863.327324 3.586961506 -0.328225 22 83 SH18727 18727 YNL147W_14_350937_351380_INTRON_19_138 intron 34.612534 176.781839 34.612534 143.169305 88.8909195 1.948857399 0.347098 22 84 SH19044 19044 YOR234C_15_779404_778554_INTRON_20_546 intron 42.691878 253.934254 42.691878 212.242376 127.467127 2.105398197 -0.138912 22 85 SH13405 13405 MT COX1 intronic 30.229647 191.760645 30.229647 162.530998 96.3803225 1.983988375 -0.036636 22 86 SH10181 10181 RUF6 RUF6 751 763 40.166732 188.19138 114.179056 2.057586448 0.097669 22 87 SH14063 14063 MT COB Cytbi4 67.142852 264.98239 67.142852 198.839538 132.991195 2.123822888 0.322004 22 88 SH20967 20967 YML026C spliced 29.57842 130.362456 79.970438 1.902929475 0.09313 22 89 SH2723 2723 Pro5 5' flank - tRNA10 10 259.482588 498.250917 378.8667525 2.578486495 -0.007196 22 90 SH12504 12504 MT_tRNA Pro 3' 29.094569 169.440915 29.094569 141.346346 85.2204575 1.930543861 -0.004648 22 91 SH15915 15915 YDL083C_4_307788_306925_INTRON_25_456 intron 32.753761 174.808768 32.753761 143.055007 87.904384 1.944010535 0.233192 22 92 SH3249 3249 Thr1 3' flank 29.613952 185.02999 107.321971 2.03068864 -0.203353 22 93 SH4343 4343 telomerase RNA telomerase 751 770 30.37685 155.887165 93.1320075 1.969098964 0.007256 22 94 SH1840 1840 Leu9 5' flank 32.116281 167.516767 99.816524 1.999202442 0.049313 22 95 SH4747 4747 snR5 5' 30.079736 173.475521 101.7776285 2.007652327 -0.108666 22 96 SH15688 15688 YBR191W_2_606228_607098_INTRON_12_399 intron 31.889288 188.058408 31.889288 157.16912 94.529204 1.975566001 0.100835 22 97 SH13821 13821 MT COB Cytbi2 31.845657 189.758256 31.845657 158.912599 95.379128 1.979453348 0.087067 22 98 SH10333 10333 RUF7 RUF7 276 293 31.845458 196.811467 114.3284625 2.058154363 -0.189153 22 99 SH4005 4005 SRP RNA 5' 29.986548 162.547328 96.266938 1.983477158 -0.053473 22 100 SH17405 17405 YIL069C_9_232366_231550_INTRON_4_412 intron/exon 28.147713 154.252151 28.147713 127.104438 77.6260755 1.89000763 0.011219 22 101 SH9609 9609 RUF3 431 + 3' 431 30.125799 150.228164 90.1769815 1.955095694 0.019988 22 102 SH14584 14584 MT 21S rRNA intronic 30.214326 211.995856 30.214326 182.78153 106.497928 2.027341158 -0.153411 22 103 SH9189 9189 snR7 U5 RNA 3' 28.382298 129.295593 78.8389455 1.896740807 0.014123 22 104 SH3830 3830 RNaseP RNaseP 116 128 30.394089 176.740635 103.567362 2.015222914 -0.108176 23 2 SH3845 3845 RNaseP RNaseP 191 206 36.840677 179.157044 107.9988605 2.033419173 0.143662 23 3 SH13634 13634 MT ATP6 ATP6 30.249794 195.018325 30.249794 165.768531 98.0091625 1.991266678 -0.051955 23 4 SH18268 18268 YML056C_13_164176_162194_INTRON_461_868 intron 30.274885 176.430881 30.274885 147.155996 88.7154405 1.947999213 0.046971 23 5 SH12453 12453 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 40.187667 219.884269 40.187667 180.696602 110.4421345 2.043134792 0.186547 23 6 SH10942 10942 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1596 1613 36.917497 150.667358 93.7924275 1.972167776 0.417466 23 7 SH11638 11638 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5076 5094 21070.93434 11917.36965 16494.15199 4.217329992 0.561932 23 8 SH1363 1363 Ile3 3' flank 32.581668 147.410987 89.9963275 1.954224787 0.19796 23 9 SH2536 2536 Pro2 5' flank 32.601162 176.603111 104.6021365 2.019540555 0.021763 23 10 SH20979 20979 YML056C spliced 34.806429 199.674757 117.240593 2.069078006 -0.132668 23 11 SH17544 17544 YJL177W_10_90783_91654_INTRON_310_626 intron 30.406617 162.720373 30.406617 133.313756 81.8601865 1.91307273 0.133844 23 12 SH17768 17768 YKL180W_11_109271_110131_INTRON_310_615 5' exon 30.382695 208.030211 30.382695 178.647516 104.5151055 2.019179063 -0.11978 23 13 SH16051 16051 YDL191W_4_117665_118518_INTRON_4_494 intron 30.339986 218.136536 30.339986 188.79655 109.568268 2.039684797 -0.178549 23 14 SH2959 2959 Ser1 tRNA 26 45 30.278005 181.072097 105.675051 2.023972466 -0.139929 23 15 SH21841 21841 copy of SH17171 54.242146 210.109405 132.1757755 2.121151867 0.042786 23 16 SH21551 21551 copy of SH4564 42.065677 199.18084 120.6232585 2.081431056 -0.004044 23 17 SH6488 6488 snR46 5' 34.318584 181.285746 107.802165 2.032627483 0.039104 23 18 SH11208 11208 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2926 2944 29.867904 130.698409 80.2831565 1.904624439 0.111637 23 19 SH5924 5924 snR36 snR36 76 98 29.745837 174.060795 101.903316 2.008188316 -0.132955 23 20 SH9367 9367 RUF1 RUF1 411 427 29.630172 144.194433 86.9123025 1.939081256 0.018224 23 21 SH15731 15731 YBR230C_2_680008_679507_INTRON_12_108 intron 38.06193 185.131606 38.06193 148.069676 93.065803 1.968790129 0.492206 23 22 SH5248 5248 snR30 snR30 91 107 44.354689 200.333793 122.344241 2.087583531 0.015289 23 23 SH12779 12779 MT COX1 COX1ai1 29.398773 197.367194 29.398773 168.968421 99.183597 1.996439854 -0.125941 23 24 SH4247 4247 telomerase RNA telomerase 271 290 29.376909 144.273774 86.8253415 1.9386465 -0.000284 23 25 SH3741 3741 Val4 5' flank 29.385448 148.863434 89.124441 1.949996819 -0.024258 23 26 SH2977 2977 Ser1 3' flank 29.423335 153.096507 91.259921 1.960280088 -0.044298 23 27 SH1003 1003 Gly2 tRNA 6 22 85.131528 254.787228 169.959378 2.230345133 0.02646 23 28 SH4595 4595 U3b (snR17b) 3' 29.575668 139.472749 84.5242085 1.926981113 0.040292 23 29 SH16837 16837 YGL178W_7_167356_170575_INTRON_4_643 intron 29.679907 171.420279 29.679907 142.740372 86.2101395 1.935558348 0.029655 23 30 SH6327 6327 snR42 3' 35.170512 153.629518 94.400015 1.974972063 0.307062 23 31 SH15417 15417 YBL059W_2_110555_111205_INTRON_287_355 intron 30.982638 216.722698 30.982638 186.74006 108.861349 2.036873712 -0.133418 23 32 SH14340 14340 MT VAR1 includes 5’ processing site VAR1 30.003383 222.446118 30.003383 193.442735 111.723059 2.048142818 -0.231398 23 33 SH13567 13567 MT COX1 Exon 6 30.083457 183.83439 30.083457 154.750933 92.417195 1.965752783 -0.00696 23 34 SH11347 11347 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3621 3638 32.314966 142.368449 87.3417075 1.941221678 0.209099 23 35 SH20291 20291 YDR500C spliced 52.010121 211.788597 131.899359 2.120242685 -0.003598 23 36 SH1175 1175 His1 3' flank 32.358866 183.152209 107.7555375 2.032439598 -0.048618 23 37 SH12203 12203 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7901 7918 34.532967 180.689994 107.6114805 2.031858606 0.052119 23 38 SH10031 10031 RUF6 RUF6 1 17 34.516039 173.268378 103.8922085 2.016582978 0.122305 23 39 SH21115 21115 YNL096C spliced 32.316234 191.434443 111.8753385 2.048734362 -0.12483 23 40 SH16494 16494 YER117W_5_396765_397649_INTRON_43_513 intron 38.825308 242.793209 38.825308 204.967901 121.8966045 2.085991608 -0.117602 23 41 SH11654 11654 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5156 5173 139.869177 300.162103 220.01564 2.342453554 0.203034 23 42 SH18131 18131 YLR406C_12_931752_931062_INTRON_58_406 5' exon 30.058284 180.176011 30.058284 151.117727 90.5880055 1.957070698 0.010549 23 43 SH5745 5745 snR35 5' 32.177076 152.51344 92.345258 1.965414599 0.144462 23 44 SH17905 17905 YLR061W_12_263195_263949_INTRON_13_401 intron 29.943483 229.493064 29.943483 200.549581 115.246532 2.061627865 -0.294676 23 45 SH19817 19817 Negative Control 49.295544 196.397846 122.846695 2.089363477 0.127049 23 46 SH18780 18780 YNL265C_14_145280_144279_INTRON_28_132 intron/exon 29.738804 173.899184 29.738804 145.16038 87.449592 1.941757788 0.020728 23 47 SH14241 14241 MT tRNA Ser 5'/tRNA 31.737192 186.173923 31.737192 155.436731 93.5869615 1.971215347 0.100516 23 48 SH8531 8531 snR19 / U1 RNA U1 151 167 31.566348 178.896405 105.2313765 2.022145251 -0.049749 23 49 SH17783 17783 YKL180W_11_109271_110131_INTRON_310_615 intron 29.264521 176.595062 29.264521 148.330541 88.797531 1.94840089 -0.029967 23 50 SH12860 12860 MT COX1 COX1ai1 31.173228 209.829701 31.173228 179.656473 105.4148505 2.022901797 -0.077484 23 51 SH18894 18894 YOL120C_15_94401_93394_INTRON_113_559 intron 33.046923 223.230349 33.046923 191.183426 112.1151745 2.049664397 -0.095831 23 52 SH16638 16638 YFR024C-A_6_203420_201947_INTRON_48_165 intron 28.677989 176.830453 28.677989 149.152464 88.9152265 1.948976139 -0.076913 23 53 SH12942 12942 MT COX1 COX1ai2 28.48744 170.890677 28.48744 143.403237 85.9453385 1.934222326 -0.06032 23 54 SH16746 16746 YGL076C_7_365994_364333_INTRON_565_1032 intron 28.316301 169.003051 28.316301 141.68675 85.0015255 1.92942672 -0.063627 23 55 SH17608 17608 YJL205C-A_10_50443_50139_INTRON_33_175 intron/exon 30.210126 167.342602 30.210126 138.132476 84.171301 1.92516404 0.092519 23 56 SH8185 8185 snoRNA cluster 3; snR70 40.256382 245.04609 40.256382 205.789708 123.023045 2.089986472 -0.105023 23 57 SH12173 12173 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7751 7771 30.044584 134.861113 82.4528485 1.916205664 0.099625 23 58 SH294 294 Arg4 66-72 + 3' flank 66 3' flank 30.03246 157.675172 93.853816 1.972451935 -0.025646 23 59 SH3404 3404 Thr4 3' flank 28.0345 148.841711 88.4381055 1.946639431 -0.123083 23 60 SH20127 20127 YDL082W spliced 40.259796 209.022011 124.6409035 2.095660588 -0.140587 23 61 SH5041 5041 snR10 236-245 + 3' 236 30.164354 174.066028 102.115191 2.009090354 -0.106867 23 62 SH7841 7841 snoRNA cluster1 snR74 30.214139 178.174105 30.214139 148.959966 89.5870525 1.952245248 0.032932 23 63 SH17708 17708 YKL081W_11_282533_284097_INTRON_206_531 intron 35.340425 211.104456 35.340425 176.764031 106.052228 2.025519797 0.116875 23 64 SH21053 21053 YMR143W spliced 28.21543 142.195726 85.205578 1.930468027 -0.073937 23 65 SH17762 17762 YKL157W_11_154993_158183_INTRON_282_664 intron 30.232029 182.636791 30.232029 153.404762 91.8183955 1.962929699 0.010342 23 66 SH2623 2623 Pro3 tRNA-intron/exon 66 78 122.900056 265.031659 193.9658575 2.287725291 0.304615 23 67 SH11179 11179 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2781 2794 34.193859 134.754418 84.4741385 1.926723771 0.370912 23 68 SH18786 18786 YNL301C_14_64561_63569_INTRON_113_544 intron 34.121677 193.012752 34.121677 159.891075 97.006376 1.98680028 0.209878 23 69 SH260 260 Arg3 3' flank 31.018452 169.394851 100.2066515 2.00089655 -0.027033 23 70 SH3728 3728 Val3 3' flank 31.973887 172.311754 102.1428205 2.009207846 0.012333 23 71 SH1128 1128 Gly4 3' flank 30.928415 197.59179 114.2601025 2.057894609 -0.230834 23 72 SH10715 10715 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 461 474 82.586316 258.324222 170.455269 2.23161043 -0.028668 23 73 SH4128 4128 SRP RNA SRP RNA 531 543 56.208246 213.390236 134.799241 2.129687447 0.036283 23 74 SH8194 8194 snoRNA cluster 3; intergenic 29.959499 166.951893 29.959499 137.992394 83.9759465 1.924154908 0.075765 23 75 SH9474 9474 RUF2 RUF2 211 227 30.026196 176.577622 103.301909 2.014108347 -0.130004 23 76 SH360 360 Arg5 3' flank 34.177122 148.39661 91.286866 1.960408297 0.288711 23 77 SH17124 17124 YHR010W_8_126513_127484_INTRON_32_592 intron 32.261675 200.396682 32.261675 169.135007 100.698341 2.003022316 0.047989 23 78 SH3955 3955 RNase MRP RNaseMRP 191 206 33.408364 151.168563 92.2884635 1.965147416 0.227379 23 79 SH15502 15502 YBR048W_2_332790_333771_INTRON_46_556 5' exon 32.504063 214.274841 32.504063 182.770778 107.6374205 2.031963281 -0.039737 23 80 SH882 882 Glu3 5' flank 32.602277 174.569853 103.586065 2.015301336 0.035488 23 81 SH1468 1468 Leu2 111-114 + 3' flank 111 28.541651 122.241475 75.391563 1.877322747 0.072133 23 82 SH19129 19129 YPL075W_16_412249_415357_INTRON_9_759 intron 30.616923 157.233924 30.616923 127.617001 79.116962 1.898269603 0.182394 23 83 SH14794 14794 "MT tRNAs (Lys, Arg1, Gly)" 5' / tRNA Lys 28.520359 233.465238 28.520359 205.944879 117.232619 2.069048467 -0.397804 23 84 SH2143 2143 Met1 3' flank 30.489185 165.150468 97.8198265 1.990426888 -0.033424 23 85 SH3506 3506 Tyr1 tRNA 71 83 40.586715 162.782614 101.6846645 2.00725546 0.420919 23 86 SH474 474 Asp2 5' flank 32.19912 175.179229 103.6891745 2.015733417 0.008687 23 87 SH7080 7080 snR63 5' 29.950612 149.693543 89.8220775 1.953383096 0.010772 23 88 SH8229 8229 snoRNA cluster 3; 3' 29.711329 187.172841 29.711329 158.461512 94.0864205 1.973526946 -0.051986 23 89 SH20002 20002 YBR078W spliced 29.458187 165.866594 97.6623905 1.98972735 -0.106742 23 90 SH13920 13920 MT COB Cytbi3 29.200356 183.924056 29.200356 155.7237 92.462028 1.965963415 -0.073869 23 91 SH1286 1286 Ile2 126-133 + 3' flank 126 140 30.897102 154.373626 92.635364 1.966776812 0.050401 23 92 SH7834 7834 snoRNA cluster1 snR74 41.298319 237.175941 41.298319 196.877622 119.0879705 2.075867894 0.011486 23 93 SH757 757 Gln4 tRNA 56 70 55.450669 203.053126 129.2518975 2.111436928 0.133017 23 94 SH11651 11651 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5141 5154 32.114635 161.893565 97.0041 1.986790091 0.083908 23 95 SH11024 11024 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2006 2019 651.378866 577.210165 614.2945155 2.788376638 0.873168 23 96 SH17828 17828 YKR094C_11_618384_617630_INTRON_9_376 5' exon 31.816011 188.117604 31.816011 157.301593 94.558802 1.975701961 0.095678 23 97 SH20347 20347 YER102W spliced 46.860167 204.969115 125.914641 2.100076232 -0.001257 23 98 SH20949 20949 YLR448W spliced 79.083535 235.133349 157.108442 2.196199522 0.118338 23 99 SH16692 16692 YGL030W_7_439087_439634_INTRON_4_233 3' exon 29.815156 190.067592 29.815156 161.252436 95.533796 1.980157035 -0.05889 23 100 SH3546 3546 Tyr2 tRNA 1 13 58.274948 190.098869 124.1869085 2.094075816 0.312063 23 101 SH19498 19498 YPT1 29.890392 157.780257 93.8353245 1.97236636 -0.036026 23 102 SH7368 7368 snR68 snR68 61 82 29.94963 137.662591 83.8061105 1.923275685 0.076935 23 103 SH6595 6595 snR47 snR47 81 97 30.013841 148.06916 89.0415005 1.94959247 0.023987 23 104 SH17741 17741 YKL156W_11_158616_159214_INTRON_4_353 3' exon 29.120121 177.531427 29.120121 149.411306 89.2657135 1.950684681 -0.046057 24 2 SH18940 18940 YOL121C_15_92849_92025_INTRON_21_410 3' exon 32.430635 186.870686 32.430635 155.440051 93.935343 1.972829026 0.143542 24 3 SH14827 14827 "MT tRNAs (Lys, Arg1, Gly)" 3' 32.434887 192.879721 32.434887 161.444834 96.9398605 1.98650239 0.105277 24 4 SH848 848 Glu2 tRNA 6 23 14170.85656 10291.23735 12231.04695 4.087463633 0.281714 24 5 SH16282 16282 YDR447C_4_1355542_1354818_INTRON_4_317 intron 30.263709 188.274105 30.263709 159.010396 94.6370525 1.976061206 -0.016558 24 6 SH5958 5958 snR36 snR36 246 263 47.842128 183.553854 115.697991 2.063325818 0.260202 24 7 SH16726 16726 YGL033W_7_435621_436347_INTRON_56_125 intron 32.48783 173.443242 32.48783 141.955412 87.221621 1.940624154 0.222524 24 8 SH5217 5217 snR30 5' 30.315284 148.258134 89.286709 1.950786816 0.043694 24 9 SH15730 15730 YBR230C_2_680008_679507_INTRON_12_108 intron 30.327794 197.352493 30.327794 168.024699 99.1762465 1.996407668 -0.060876 24 10 SH16843 16843 YGL178W_7_167356_170575_INTRON_4_643 intron 30.331579 168.199666 30.331579 138.868087 84.599833 1.927369506 0.09683 24 11 SH9038 9038 snR17a / U3a U3a 476 490 111.656393 282.538243 197.097318 2.294680715 0.088226 24 12 SH921 921 Glu3 3' flank 30.296613 146.707452 88.5020325 1.946953245 0.050933 24 13 SH4798 4798 snR5 snR5 161 180 32.435186 198.451503 115.4433445 2.0623689 -0.181176 24 14 SH1274 1274 Ile2 tRNA-intron 66 82 34.545181 186.991328 110.7682545 2.044415312 -0.005303 24 15 SH19831 19831 Negative Control 30.100204 176.514758 103.307481 2.014131772 -0.12504 24 16 SH15048 15048 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.91431 164.261688 28.91431 136.347378 82.630844 1.917142189 0.010324 24 17 SH11806 11806 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5916 5931 238.235522 420.399738 329.31763 2.517614981 0.183393 24 18 SH13315 13315 MT COX1 COX1-ai5a 29.753915 217.213196 29.753915 188.459281 109.106598 2.037851014 -0.213196 24 19 SH910 910 Glu3 61-72 + 3' flank 61 42.482809 192.800654 117.6417315 2.070561408 0.076277 24 20 SH3891 3891 RNaseP 3' 40.186114 204.106373 122.1462435 2.086880115 -0.087301 24 21 SH5841 5841 snR35 snR35 391 407 54.996134 242.850361 148.9232475 2.172962498 -0.254605 24 22 SH13800 13800 MT COB intronic 27.251406 165.080688 27.251406 138.829282 83.040344 1.91928914 -0.128462 24 23 SH5725 5725 snR34 546-550 + 3' 546 27.225487 156.894128 92.0598075 1.964070062 -0.225814 24 24 SH7893 7893 snoRNA cluster1 intergenic 78.308723 307.510169 78.308723 230.201446 154.2550845 2.188239488 0.151995 24 25 SH5068 5068 snR11 5' 27.26494 135.696733 81.4808365 1.911055479 -0.108526 24 26 SH7435 7435 snR69 snR69 76 94 29.44773 147.561759 88.5047445 1.946966553 -0.012773 24 27 SH17856 17856 YKR095W-A_11_625432_625839_INTRON_39_113 intron 29.533658 194.905396 29.533658 166.371738 97.952698 1.991016403 -0.103895 24 28 SH1601 1601 Leu4 3' flank 29.635591 150.777514 90.2065525 1.955238085 -0.017016 24 29 SH17269 17269 YHR123W_8_354817_356083_INTRON_51_141 intron 42.646553 240.5525 42.646553 198.905947 120.77625 2.081981541 0.007343 24 30 SH10339 10339 RUF7 RUF7 306 323 29.859927 131.827133 80.84353 1.907645269 0.104373 24 31 SH7779 7779 snoRNA cluster1 intergenic 34.293659 173.666701 34.293659 140.373042 87.3333505 1.941180122 0.343868 24 32 SH1120 1120 Gly4 3' flank 30.059026 132.041512 81.050269 1.908754461 0.117103 24 33 SH5328 5328 snR30 snR30 491 507 32.305522 168.38396 100.344741 2.001494616 0.05505 24 34 SH21846 21846 copy of SH17381 41.083804 203.118286 122.101045 2.086719381 -0.062953 24 35 SH8468 8468 snoRNA cluster 5 3' 34.560506 184.390128 34.560506 150.829622 92.695064 1.967056609 0.293041 24 36 SH11699 11699 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5381 5394 49444.29793 37248.38718 43346.34256 4.636952459 -0.141851 24 37 SH8879 8879 LSR1 / U2 RNA U2 1036 1048 245.991716 470.610427 358.3010715 2.554248107 0.026664 24 38 SH14618 14618 MT 21S rRNA Sce1 endonuc 30.144101 180.875979 30.144101 151.731878 90.9379895 1.958745348 0.01318 24 39 SH736 736 Gln4 5' flank 32.276952 184.970818 108.623885 2.035925332 -0.068327 24 40 SH18551 18551 YMR230W_13_732413_733140_INTRON_53_462 intron 30.058273 194.736223 30.058273 165.67795 97.8681115 1.990641208 -0.063969 24 41 SH18273 18273 YML056C_13_164176_162194_INTRON_461_868 intron 32.175918 205.390764 32.175918 174.214846 103.195382 2.013660263 0.012948 24 42 SH1856 1856 Leu9 tRNA 21 37 38.613957 185.346999 111.980478 2.049142317 0.102945 24 43 SH10962 10962 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1696 1714 702.20992 994.231778 848.220849 2.928508943 0.082186 24 44 SH14781 14781 MT ORF11; tRNA Leu; tRNA Gln tRNA / 3' 31.968669 229.127589 31.968669 198.15892 115.0637945 2.060938692 -0.196041 24 45 SH5245 5245 snR30 snR30 76 92 32.943939 136.920652 84.9322955 1.929072862 0.280711 24 46 SH13633 13633 MT ATP6 ATP6 31.753633 205.279364 31.753633 174.525731 103.139682 2.013425788 -0.01356 24 47 SH21549 21549 copy of SH4562 33.748068 189.213745 111.4809065 2.047200491 -0.053206 24 48 SH5310 5310 snR30 snR30 401 415 33.584808 192.242536 112.913672 2.052746531 -0.085813 24 49 SH7488 7488 snR71 snR71 56 74 33.405547 155.374653 94.3901 1.974926446 0.199338 24 50 SH13925 13925 MT COB Cytbi3 31.117106 174.879769 31.117106 144.762663 87.9398845 1.944185891 0.117199 24 51 SH10573 10573 RUF8 RUF8 791 805 33.012457 168.548317 100.780387 2.003376022 0.094525 24 52 SH7042 7042 snR62 snR62 1 23 28.668395 141.662729 85.165562 1.930264017 -0.037468 24 53 SH11928 11928 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6526 6541 7065.095792 6825.321142 6945.208467 3.841685286 0.034608 24 54 SH6621 6621 snR48 5' 30.380533 136.492813 83.436673 1.921356978 0.113671 24 55 SH833 833 Glu2 5' flank 30.234218 153.995665 92.1149415 1.964330081 0.007378 24 56 SH16197 16197 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 30.121584 157.129562 30.121584 128.007978 79.064781 1.897983072 0.145658 24 57 SH14267 14267 MT VAR1 includes 5’ processing site VAR1 30.047474 198.187325 30.047474 169.139851 99.5936625 1.998231704 -0.084956 24 58 SH1982 1982 Lys2 3' flank 32.033265 198.198566 115.1159155 2.061135372 -0.193961 24 59 SH12183 12183 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7801 7817 34.051759 198.315258 116.1835085 2.065144487 -0.133297 24 60 SH12824 12824 MT COX1 COX1ai1 30.025877 196.336979 30.025877 167.311102 98.6684895 1.99417848 -0.075255 24 61 SH5925 5925 snR36 snR36 81 102 30.054603 175.856873 102.955738 2.012650556 -0.12408 24 62 SH11295 11295 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3361 3379 28.057373 131.745081 79.901227 1.902553449 -0.025111 24 63 SH642 642 Gln2 5' flank - tRNA15 5' flank 15 54.497623 216.979972 135.7387975 2.132703997 -0.022645 24 64 SH5288 5288 snR30 snR30 291 303 50.423886 176.46261 113.443248 2.054778652 0.382246 24 65 SH13876 13876 MT COB intronic 32.1106 206.241771 32.1106 175.131171 103.6208855 2.015447299 0.003819 24 66 SH9803 9803 RUF4 3' 32.075896 153.885852 92.980874 1.968393624 0.130669 24 67 SH4944 4944 snR9 snR9 126 140 67.555618 205.598506 136.577062 2.135377766 0.257806 24 68 SH19921 19921 YAL030W spliced 29.957851 170.783929 100.37089 2.001607775 -0.100368 24 69 SH1698 1698 Leu6 tRNA 56 68 93.819807 235.37864 164.5992235 2.216427782 0.271704 24 70 SH13846 13846 MT COB Cytbi2 27.856995 164.059132 27.856995 137.202137 82.529566 1.916609561 -0.073004 24 71 SH20939 20939 YLR406C spliced 31.849324 136.615753 84.2325385 1.925479889 0.21239 24 72 SH16961 16961 YGR034W_7_555923_556666_INTRON_20_496 5' exon 31.839522 233.650058 31.839522 202.810536 117.325029 2.06939067 -0.240044 24 73 SH6823 6823 snR52 snR52 21 36 54.042117 212.981304 133.5117105 2.12551936 0.010541 24 74 SH461 461 Asp1 3' flank 31.897113 171.85653 101.8768215 2.008075387 0.010526 24 75 SH13667 13667 MT ATP6 ATP6 33.988354 206.06593 33.988354 173.077576 103.532965 2.015078652 0.105709 24 76 SH740 740 Gln4 5' flank 32.068247 173.018586 102.5434165 2.010907783 0.013682 24 77 SH17083 17083 YHL001W_8_104270_105084_INTRON_130_527 exon/intron 34.224044 218.790239 34.224044 185.566195 109.8951195 2.040978406 -0.003581 24 78 SH11695 11695 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5361 5378 13847.78876 3757.27751 8802.533136 3.944607669 1.855397 24 79 SH9848 9848 RUF5-1 RUF5-1 46 65 34.51383 202.523545 118.5186875 2.073786833 -0.169493 24 80 SH14192 14192 MT COB Exon6 32.584659 205.988539 32.584659 174.40388 103.4942695 2.014916303 0.035444 24 81 SH2846 2846 Pro7 tRNA-exon/intron 36 48 32.675692 169.071069 100.8733805 2.003776575 0.072211 24 82 SH12480 12480 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S/3' flank 36.857528 170.281168 36.857528 134.42364 85.640584 1.93267962 0.528579 24 83 SH6675 6675 snR49 5' 30.647049 180.724308 105.6856785 2.02401614 -0.115328 24 84 SH13968 13968 MT COB Cytbi3 30.583184 214.15863 30.583184 184.575446 107.579315 2.031728775 -0.140651 24 85 SH20459 20459 YGL178W spliced 30.465379 195.237084 112.8512315 2.052506303 -0.228673 24 86 SH12197 12197 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7871 7889 31.31985 167.985276 99.652563 1.998488473 -0.000467 24 87 SH7261 7261 snR65 snR65 81 100 30.092855 165.100855 97.596855 1.989435823 -0.058756 24 88 SH13432 13432 MT COX1 intronic 97.643575 365.735622 97.643575 269.092047 183.367811 2.263323101 0.049943 24 89 SH11254 11254 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3156 3169 32.589214 179.417713 106.0034635 2.025320055 -0.005358 24 90 SH16179 16179 YDR305C_4_1073479_1072737_INTRON_88_176 intron/exon 30.315845 217.873979 30.315845 188.558134 109.4369895 2.039164138 -0.178753 24 91 SH15084 15084 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.036195 208.818973 30.036195 179.782778 104.9094865 2.020814761 -0.147658 24 92 SH13074 13074 MT COX1 COX1ai3 30.736067 221.276958 30.736067 191.540891 111.138479 2.045864449 -0.185824 24 93 SH20506 20506 YGR027C spliced 30.476913 138.297701 84.387307 1.926277128 0.110105 24 94 SH5803 5803 snR35 snR35 201 219 57.080387 239.120152 148.1002695 2.170555849 -0.192233 24 95 SH12532 12532 MT_ORF6 + ORF7 (hypothetical) ORF6/7 30.053396 183.864848 30.053396 154.811452 92.432424 1.965824342 -0.009351 24 96 SH15902 15902 YDL083C_4_307788_306925_INTRON_25_456 intron 33.67898 212.303658 33.67898 179.624678 106.651829 2.027968308 0.0321 24 97 SH17835 17835 YKR094C_11_618384_617630_INTRON_9_376 intron 33.553699 227.249081 33.553699 194.695382 114.1245405 2.057379042 -0.108317 24 98 SH5505 5505 snR32 186-188 + 3' 186 27.839109 142.496599 85.167854 1.930275704 -0.103863 24 99 SH15111 15111 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF3 exon3 29.677241 207.052129 29.677241 178.374888 104.0260645 2.017142169 -0.162145 24 100 SH14093 14093 MT COB Cytbi4 31.543203 217.019296 31.543203 186.476093 109.009648 2.037464937 -0.109551 24 101 SH6766 6766 snR50 snR50 6 22 10123.8708 7490.953085 8807.411943 3.94484831 0.351979 24 102 SH21702 21702 copy of SH10877 43386.10669 30601.48183 36993.79426 4.568128877 0.000251 24 103 SH8278 8278 snoRNA cluster4 snR67/intergenic 31.618337 197.965565 31.618337 167.347228 99.4827825 1.997747924 0.021131 24 104 SH14152 14152 MT COB intronic 31.657774 200.443118 31.657774 169.785344 100.721559 2.003122439 0.008766 25 2 SH1561 1561 Leu4 5' flank 32.436063 156.650289 94.543176 1.975630188 0.135975 25 3 SH10186 10186 RUF6 RUF6 776 795 32.424635 155.540308 93.9824715 1.973046862 0.142541 25 4 SH11785 11785 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5811 5824 47056.85348 35246.78744 41151.82046 4.614389052 -0.118514 25 5 SH21648 21648 copy of SH8563 35.695459 145.589151 90.642305 1.957330941 0.389373 25 6 SH10309 10309 RUF7 RUF7 156 168 34.597278 195.841948 115.219613 2.061526412 -0.09472 25 7 SH16922 16922 YGL251C_7_31636_27921_INTRON_59_210 intron/exon 32.413267 216.539836 32.413267 185.126569 108.769918 2.036508801 -0.064699 25 8 SH6650 6650 snR48 snR48 76 93 36.791158 197.812582 117.30187 2.069304936 -0.073027 25 9 SH9896 9896 RUF5-1 RUF5-1 286 301 32.422273 172.599331 102.510802 2.010769631 0.036672 25 10 SH511 511 Asp2 3' flank 36.790075 185.442658 111.1163665 2.045778032 0.067589 25 11 SH4103 4103 SRP RNA SRP RNA 406 422 32.405308 168.360671 100.3829895 2.001660125 0.060956 25 12 SH18673 18673 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.016808 154.344264 28.016808 127.327456 77.672132 1.890265226 0.000179 25 13 SH4820 4820 snR5 3' 32.323008 136.557274 84.440141 1.92654895 0.243375 25 14 SH12017 12017 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6971 6992 30.077758 156.144029 93.1108935 1.969000494 -0.014613 25 15 SH4315 4315 telomerase RNA telomerase 611 627 29.987354 183.819375 106.9033645 2.028991374 -0.17326 25 16 SH8164 8164 snoRNA cluster 3; snR70 42.838552 198.023035 42.838552 156.184483 99.5115175 1.997873349 0.549239 25 17 SH19990 19990 YBL092W spliced 31.903935 189.942045 110.92299 2.045021568 -0.127005 25 18 SH5928 5928 snR36 snR36 96 112 36.049267 180.728066 108.3886665 2.034983873 0.103241 25 19 SH7171 7171 snR64 5' 35.901859 177.439391 106.670625 2.02804484 0.129321 25 20 SH1818 1818 Leu8 3' flank 29.404775 127.586485 78.49563 1.894845479 0.097938 25 21 SH252 252 Arg3 3' flank 31.446032 169.213837 100.3299345 2.001430529 -0.000354 25 22 SH8156 8156 snoRNA cluster 3; intergenic/snR70 29.289287 155.97822 29.289287 127.688933 78.48911 1.894809405 0.08918 25 23 SH1475 1475 Leu2 3' flank 29.287637 184.333667 106.810652 2.028614566 -0.220235 25 24 SH13449 13449 MT COX1 intronic 29.3228 208.625019 29.3228 180.302219 104.8125095 2.020413119 -0.195525 25 25 SH16048 16048 YDL191W_4_117665_118518_INTRON_4_494 intron 27.270304 148.115104 27.270304 121.8448 74.557552 1.87249164 -0.018887 25 26 SH10628 10628 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 26 46 27.354607 133.933876 80.6442415 1.906573362 -0.090937 25 27 SH1220 1220 Ile1 tRNA 61 73 35.996295 185.228915 110.612605 2.04380462 0.054669 25 28 SH749 749 Gln4 tRNA 16 32 29.702481 149.615561 89.659021 1.952593992 -0.00607 25 29 SH1920 1920 Lys1 tRNA 56 68 36.278734 193.010662 114.644698 2.059353975 -0.029429 25 30 SH10068 10068 RUF6 RUF6 186 202 64.626815 248.010767 156.318791 2.194011187 -0.164444 25 31 SH11642 11642 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5096 5109 1699.63573 1205.495727 1452.565729 3.162135793 0.909725 25 32 SH20248 20248 YDR381C-A spliced 30.11347 178.659204 104.386337 2.018643658 -0.136485 25 33 SH12992 12992 MT COX1 COX1ai2 30.175155 170.828171 30.175155 141.653016 85.9140855 1.934064372 0.070467 25 34 SH19624 19624 RNA14 1.1 30.212305 145.628112 87.9202085 1.944088709 0.051131 25 35 SH12318 12318 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.223882 218.002806 30.223882 188.778924 109.501403 2.039419684 -0.185622 25 36 SH14938 14938 MT tRNA Asn 3' 30.211072 165.89501 30.211072 136.683938 83.447505 1.921413356 0.1008 25 37 SH15498 15498 YBL092W_2_45639_46364_INTRON_1_333 intron 30.177086 170.996139 30.177086 141.819053 85.9980695 1.934488702 0.069689 25 38 SH18101 18101 YLR367W_12_855877_857316_INTRON_698_1180 intron 32.301644 217.37152 32.301644 186.069876 109.18576 2.038166001 -0.077408 25 39 SH6440 6440 snR45 snR45 46 65 34.40739 176.68052 105.543955 2.023433364 0.085621 25 40 SH16691 16691 YGL030W_7_439087_439634_INTRON_4_233 3' exon 34.328768 246.628347 34.328768 213.299579 123.8141735 2.092770363 -0.286203 25 41 SH2518 2518 Pro1 3' flank 36.409031 148.631312 92.5201715 1.966236429 0.405363 25 42 SH17814 17814 YKR057W_11_551293_551878_INTRON_25_346 intron 32.003472 220.096665 32.003472 189.093193 110.5483325 2.043552196 -0.115715 25 43 SH6410 6410 snR43 3' 29.76982 171.749854 100.759837 2.003287456 -0.117869 25 44 SH14429 14429 MT 21S rRNA 21S rRNA3 29.685002 188.853618 29.685002 160.168616 94.926809 1.977388882 -0.062506 25 45 SH16977 16977 YGR034W_7_555923_556666_INTRON_20_496 intron 31.727913 213.469712 31.727913 182.741799 107.234856 2.030335973 -0.068421 25 46 SH11455 11455 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4161 4174 291.04888 395.657633 343.3532565 2.535741171 0.521037 25 47 SH7926 7926 snoRNA cluster1 snR72 33.617036 223.648905 33.617036 191.031869 112.3244525 2.05047431 -0.074003 25 48 SH16102 16102 YDR059C_4_569765_569229_INTRON_48_137 3' exon 51.481231 223.752299 51.481231 173.271068 112.3761495 2.050674147 0.436499 25 49 SH16744 16744 YGL076C_7_365994_364333_INTRON_565_1032 intron 33.321807 214.705665 33.321807 182.383858 107.8528325 2.032831555 -0.006396 25 50 SH5763 5763 snR35 snR35 1 18 31.065962 153.214048 92.140005 1.964448231 0.06782 25 51 SH10194 10194 RUF6 RUF6 816 834 30.905769 176.110342 103.5080555 2.01497415 -0.073337 25 52 SH5312 5312 snR30 snR30 411 427 30.741223 138.043286 84.3922545 1.926302589 0.129726 25 53 SH10866 10866 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1216 1231 78.206641 244.937549 161.572095 2.208366356 0.026786 25 54 SH9176 9176 snR7 U5 RNA U5 151 165 123.835661 291.365217 207.600439 2.317228268 0.133979 25 55 SH13683 13683 MT ORF 5 (hypothetical) 5' / ORF5 30.281418 183.804463 30.281418 154.523045 92.4022315 1.965682459 0.007846 25 56 SH19931 19931 YBL026W spliced 28.133796 200.027098 114.080447 2.057211214 -0.378386 25 57 SH6861 6861 snR56 5' 28.051603 124.053887 76.052745 1.881114894 0.024317 25 58 SH5965 5965 snR36 snR36 281 300 30.018174 144.797899 87.4080365 1.941551365 0.042369 25 59 SH9833 9833 RUF5-1 5' 224.151971 428.897469 326.52472 2.513916066 0.07862 25 60 SH10448 10448 RUF8 RUF8 166 184 29.976948 179.605475 104.7912115 2.020324861 -0.150346 25 61 SH7361 7361 snR68 snR68 26 42 38.065389 163.667111 100.86625 2.003745875 0.335758 25 62 SH7626 7626 snR189 3' 29.988851 144.959504 87.4741775 1.941879868 0.039442 25 63 SH8974 8974 snR17a / U3a U3a 156 173 29.995079 176.74684 103.3709595 2.014398547 -0.132915 25 64 SH12244 12244 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.993645 179.094475 29.993645 150.10083 90.0472375 1.954470394 0.011551 25 65 SH3922 3922 RNase MRP RNaseMRP 26 44 34.021616 180.814605 107.4181105 2.031077509 0.033084 25 66 SH6973 6973 snR60 5' 29.958888 126.486844 78.222866 1.893333724 0.143568 25 67 SH13296 13296 MT COX1 COX1-ai5a 27.912888 198.300754 27.912888 171.387866 99.650377 1.998478946 -0.245093 25 68 SH15474 15474 YBL091C-A_2_46858_46559_INTRON_35_122 exon/intron 31.903416 172.512761 31.903416 141.609345 86.7563805 1.938301425 0.18683 25 69 SH19544 19544 CBP1 1.2 31.863196 155.045888 93.454542 1.970600413 0.110778 25 70 SH10380 10380 RUF7 3' 29.819218 174.341061 102.0801395 2.008941255 -0.129983 25 71 SH12809 12809 MT COX1 COX1ai1 29.795576 175.26642 29.795576 146.470844 88.13321 1.945139588 0.017632 25 72 SH3530 3530 Tyr2 5' flank 29.786802 144.434288 87.110545 1.940070731 0.028033 25 73 SH12282 12282 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.823613 229.988594 35.823613 195.164981 115.494297 2.06256054 -0.062535 25 74 SH232 232 Arg3 16-32 16 32 29.832451 150.573905 90.203178 1.955221839 -0.002182 25 75 SH21647 21647 copy of SH8562 31.907981 152.91604 92.4120105 1.965728419 0.124898 25 76 SH12670 12670 MT_15S 3' 44.150392 247.6447 44.150392 204.494308 124.32235 2.094549211 -0.033892 25 77 SH10649 10649 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 131 144 23220.57803 9925.347725 16572.96288 4.219400158 0.978628 25 78 SH8318 8318 snoRNA cluster4 intergenic 36.342724 209.464944 36.342724 174.12222 105.232472 2.022149772 0.175787 25 79 SH7049 7049 snR62 snR62 36 57 34.460879 173.272194 103.8665365 2.01647565 0.120352 25 80 SH13535 13535 MT COX1 intronic 30.498351 190.399421 30.498351 160.90107 95.6997105 1.980910624 -0.010105 25 81 SH1352 1352 Ile3 3' flank 30.60734 130.336878 80.472109 1.905645383 0.1653 25 82 SH14090 14090 MT COB Cytbi4 28.611857 191.954798 28.611857 164.342941 96.477399 1.984425587 -0.159762 25 83 SH16092 16092 YDR025W_4_491510_492319_INTRON_46_384 intron/exon 370.764887 817.804319 370.764887 448.039432 409.4021595 2.612150129 0.600105 25 84 SH21773 21773 copy of SH13813 28.59763 167.637709 98.1176695 1.991747224 -0.176875 25 85 SH18841 18841 YNL312W_14_48286_49215_INTRON_8_115 5' exon 30.569115 218.194642 30.569115 188.625527 109.597321 2.039799938 -0.166467 25 86 SH20836 20836 YKR095W-A spliced 34.52342 220.292797 127.4081085 2.105197068 -0.352855 25 87 SH9857 9857 RUF5-1 RUF5-1 91 108 44.512152 144.263098 94.387625 1.974915058 0.736132 25 88 SH17105 17105 YHL001W_8_104270_105084_INTRON_130_527 3' exon 42.144179 227.28892 42.144179 186.144741 114.14446 2.057454838 0.15176 25 89 SH3018 3018 Ser2 tRNA 51 63 37.763255 174.072693 105.917974 2.024969665 0.222199 25 90 SH7269 7269 snR65 3' 29.465472 145.652074 87.558773 1.942299667 -0.001354 25 91 SH12100 12100 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7386 7403 311.740096 455.498786 383.619441 2.583900608 0.36364 25 92 SH3495 3495 Tyr1 tRNA 16 32 361.898687 604.465159 483.181923 2.684110678 0.070286 25 93 SH17015 17015 YGR148C_7_788173_787307_INTRON_1_392 intron 30.577444 213.696056 30.577444 184.118612 107.348028 2.030794071 -0.138484 25 94 SH8418 8418 snoRNA cluster 5 snR190 39.912008 220.204413 39.912008 181.292405 110.6022065 2.043763791 0.174509 25 95 SH19065 19065 YOR293W_15_867094_867848_INTRON_53_489 intron 30.103106 219.234748 30.103106 190.131642 110.117374 2.041855846 -0.200361 25 96 SH2645 2645 Pro3 3' flank 29.9185 142.391455 86.1549775 1.935280373 0.048425 25 97 SH20544 20544 YGR214W spliced 31.652316 167.703152 99.677734 1.998598156 0.02098 25 98 SH1542 1542 Leu3 3' flank 29.659859 153.070876 91.3653675 1.960781605 -0.027546 25 99 SH5194 5194 snR13 3' 33.321907 181.510923 107.416415 2.031070654 0.001704 25 100 SH17782 17782 YKL180W_11_109271_110131_INTRON_310_615 intron 31.395253 201.552698 31.395253 171.157445 101.276349 2.005508037 -0.014979 25 101 SH5585 5585 snR33 3' 31.362591 150.818388 91.0904895 1.959473036 0.100309 25 102 SH20797 20797 YKL157W spliced 33.217116 181.625402 107.421259 2.031090238 -0.003133 25 103 SH2589 2589 Pro2 3' flank 29.468959 143.246287 86.357623 1.93630068 0.011875 25 104 SH19141 19141 YPL075W_16_412249_415357_INTRON_9_759 intron 31.342207 195.924808 31.342207 165.582601 98.462404 1.993270435 0.015504 26 2 SH19552 19552 CBP1 2.2 32.428033 193.090467 112.75925 2.052152179 -0.135227 26 3 SH12568 12568 MT_15S MT_15S 30.208596 202.328035 30.208596 173.119439 101.6640175 2.007167268 -0.098587 26 4 SH564 564 Cys1 3' flank 34.568053 196.684981 115.626517 2.063057444 -0.104673 26 5 SH16280 16280 YDR447C_4_1355542_1354818_INTRON_4_317 intron 32.356488 182.777296 32.356488 151.420808 91.888648 1.963261862 0.161826 26 6 SH14832 14832 MT tRNA Asp 5' 27.980147 166.495141 27.980147 139.514994 83.7475705 1.922972217 -0.076741 26 7 SH2092 2092 Lys4 3' flank 32.328952 182.015454 107.172203 2.030082158 -0.03922 26 8 SH8598 8598 snR19 / U1 RNA U1 486 498 45.41652 203.847221 124.6318705 2.095629113 -0.008794 26 9 SH5030 5030 snR10 snR10 181 197 36.673127 186.539675 111.606401 2.047689104 0.05249 26 10 SH19977 19977 YBL087C spliced 34.482795 175.055933 104.769364 2.020234308 0.103831 26 11 SH5408 5408 snR31 snR31 106 127 32.286543 158.352721 95.319632 1.979182357 0.116356 26 12 SH19803 19803 Negative Control 38.774547 181.469352 110.1219495 2.041873891 0.151928 26 13 SH1397 1397 Leu1 tRNA-intron 56 72 239.427611 408.465864 323.9467375 2.51047361 0.239127 26 14 SH20185 20185 YDL191W spliced 38.614929 187.328582 112.9717555 2.052969877 0.079802 26 15 SH11187 11187 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2821 2839 29.862766 122.690483 76.2766245 1.882391466 0.162153 26 16 SH8790 8790 LSR1 / U2 RNA U2 591 607 195.7361 389.467736 292.601918 2.466277169 0.093767 26 17 SH19271 19271 YPL143W_16_282121_282969_INTRON_20_544 intron 29.625829 206.122121 29.625829 177.496292 103.5610605 2.015196489 -0.16037 26 18 SH13370 13370 MT COX1 intronic 27.371796 160.757243 27.371796 134.385447 80.8786215 1.907833741 -0.092434 26 19 SH4808 4808 snR5 3' 29.383712 131.310393 80.3470525 1.904969949 0.073574 26 20 SH1942 1942 Lys2 5' flank 27.178559 149.481286 88.3299225 1.946107849 -0.191729 26 21 SH6367 6367 snR43 snR43 76 92 31.342762 170.685313 101.0140375 2.00438173 -0.0153 26 22 SH1247 1247 Ile2 5' flank 33.434654 183.914928 108.674791 2.036128814 -0.016452 26 23 SH2569 2569 Pro2 tRNA 81 95 39.807407 168.680474 104.2439405 2.01805082 0.32969 26 24 SH8549 8549 snR19 / U1 RNA U1 241 253 37.776378 183.199147 110.4877625 2.043314179 0.112815 26 25 SH18390 18390 YMR116C_13_500687_499455_INTRON_538_810 intron 29.40531 230.348687 29.40531 201.943377 115.6743435 2.063237043 -0.328089 26 26 SH4126 4126 SRP RNA SRP RNA 521 533 125.625873 258.470553 192.048213 2.28341027 0.373829 26 27 SH8481 8481 snR19 / U1 RNA 5' 29.649333 138.716507 84.18292 1.925223986 0.049768 26 28 SH20149 20149 YDL115C spliced 51.318534 211.029042 131.173788 2.11784706 -0.004905 26 29 SH7445 7445 snR69 3' 29.89635 132.384997 81.1406735 1.909238608 0.103649 26 30 SH9218 9218 snR6 / U6 RNA 5' 30.003993 140.454515 85.229254 1.930588687 0.065108 26 31 SH16741 16741 YGL076C_7_365994_364333_INTRON_565_1032 intron 30.095494 219.402258 30.095494 190.306764 110.201129 2.042186044 -0.201769 26 32 SH4500 4500 U3b (snR17b) U3b 56 73 32.34532 178.73596 105.54064 2.023419723 -0.007932 26 33 SH3451 3451 Trp1 tRNA 86 101 36.766713 179.066648 107.9166805 2.033088578 0.142432 26 34 SH7628 7628 snR189 3' 32.428903 148.718197 90.57355 1.95700139 0.181055 26 35 SH17792 17792 YKL186C_11_93537_92746_INTRON_71_233 intron 32.430958 212.086683 32.430958 180.655725 106.5433415 2.027526313 -0.022793 26 36 SH11378 11378 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3776 3789 29303.79455 20734.5097 25019.15212 4.398272588 0.109071 26 37 SH21816 21816 copy of SH15701 32.355445 157.593964 94.9747045 1.977607951 0.125221 26 38 SH12778 12778 MT COX1 COX1ai1 32.283513 183.488726 32.283513 152.205213 92.244363 1.964939836 0.152955 26 39 SH12027 12027 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7021 7041 30.027865 142.526286 86.2770755 1.935895416 0.055372 26 40 SH5979 5979 snR36 351-355 + 3' 351 368 32.098093 147.928885 90.013489 1.954307596 0.164087 26 41 SH7735 7735 snoRNA cluster1 intergenic 29.842078 181.337127 29.842078 152.495049 91.1685635 1.959845112 -0.011782 26 42 SH17357 17357 YIL052C_9_257061_256224_INTRON_38_509 exon/intron 31.894023 201.748463 31.894023 170.85444 101.3742315 2.005927575 0.016287 26 43 SH19880 19880 Negative Control 32.863305 149.326533 91.094919 1.959494154 0.205363 26 44 SH17315 17315 YHR203C_8_505526_504472_INTRON_15_283 intron 29.55784 189.845484 29.55784 161.287644 95.422742 1.979651892 -0.077055 26 45 SH13475 13475 MT COX1 intronic 29.462443 192.55773 29.462443 164.095287 96.778865 1.985780524 -0.097744 26 46 SH10252 10252 RUF6 3' 31.484093 159.967478 95.7257855 1.981028939 0.058999 26 47 SH1304 1304 Ile3 5' flank 29.263156 172.425424 100.84429 2.003651313 -0.153947 26 48 SH11091 11091 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2341 2354 751.859745 1142.315031 947.087388 2.976390053 -0.055513 26 49 SH19997 19997 YBR048W spliced 151.679194 319.008252 235.343723 2.371702619 0.175236 26 50 SH21574 21574 copy of SH5620 35.200863 163.966109 99.583486 1.998187325 0.238957 26 51 SH13020 13020 MT COX1 COX1ai2 30.889309 227.844308 30.889309 197.954999 114.422154 2.058510119 -0.235448 26 52 SH5075 5075 snR11 5' 28.682137 141.754066 85.2181015 1.930531855 -0.036961 26 53 SH10052 10052 RUF6 RUF6 106 123 30.612203 175.545434 103.0788185 2.013169432 -0.087915 26 54 SH12997 12997 MT COX1 COX1ai2 36.635766 236.673564 36.635766 201.037798 118.836782 2.074950883 -0.111245 26 55 SH6037 6037 snR37 snR37 101 115 174.121965 394.454499 284.288232 2.453758883 -0.059264 26 56 SH11835 11835 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6061 6074 942.839493 1324.524003 1133.681748 3.054491155 -0.003522 26 57 SH19015 19015 YOR182C_15_678792_678190_INTRON_4_414 intron 30.119203 203.585267 30.119203 174.466064 102.2926335 2.00984436 -0.111999 26 58 SH868 868 Glu2 3' flank 32.065107 170.386612 101.2258595 2.005291473 0.029073 26 59 SH21814 21814 copy of SH15699 34.027797 206.495502 120.2616495 2.080127156 -0.221827 26 60 SH2813 2813 Pro6 3' flank 29.952481 132.939331 81.445906 1.910869259 0.104344 26 61 SH5130 5130 snR11 251-258 + 3' 251 29.935144 138.656423 84.2957835 1.925805852 0.070311 26 62 SH16446 16446 YER074W_5_306319_307192_INTRON_4_469 intron 29.928679 166.115028 29.928679 137.186349 83.557514 1.92198551 0.078162 26 63 SH8937 8937 snR17a / U3a 5' 29.927081 128.711371 79.319226 1.899378468 0.127744 26 64 SH11151 11151 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2641 2659 46726.01425 34436.13596 40581.07511 4.608323549 -0.090766 26 65 SH1018 1018 Gly2 3' flank 33.949733 200.456303 117.203018 2.068938795 -0.158807 26 66 SH16968 16968 YGR034W_7_555923_556666_INTRON_20_496 intron 35.95112 214.265058 35.95112 179.313938 107.632529 2.031943545 0.113231 26 67 SH1065 1065 Gly3 61-71 + 3' flank 61 31.89734 181.412383 106.6548615 2.027980656 -0.04972 26 68 SH21605 21605 copy of SH6881 31.869683 159.867 95.8683415 1.981675214 0.082393 26 69 SH19846 19846 Negative Control 33.849571 189.001316 111.4254435 2.046984371 -0.047713 26 70 SH10280 10280 RUF7 RUF7 11 30 33.818645 174.675889 104.247267 2.018064678 0.084201 26 71 SH6062 6062 snR37 snR37 226 245 29.781325 147.716681 88.749003 1.948163483 0.009778 26 72 SH112 112 Arg1 5' flank 35.790384 189.22067 112.505527 2.051173858 0.004174 26 73 SH4824 4824 snR8 5' 31.782043 176.639362 104.2107025 2.017912324 -0.024119 26 74 SH12467 12467 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 657.431073 1485.261751 657.431073 828.830678 743.1308755 2.871065306 0.294522 26 75 SH14675 14675 MT 21S rRNA 21S rRNA4 29.85466 195.607258 29.85466 166.752598 98.303629 1.992569551 -0.083313 26 76 SH4369 4369 telomerase RNA telomerase 881 898 35.98958 224.165538 130.077559 2.114202378 -0.36772 26 77 SH2475 2475 Phe5 3' flank 40.176998 161.234583 100.7057905 2.003054443 0.425701 26 78 SH15699 15699 YBR220C_2_663261_662457_INTRON_302_722 intron 38.314142 243.55309 38.314142 206.238948 122.276545 2.087343159 -0.139683 26 79 SH13599 13599 MT ATP8/AAP1 ATP8 32.360434 191.964228 32.360434 160.603794 96.482114 1.984446811 0.106288 26 80 SH917 917 Glu3 3' flank 30.461806 139.116034 84.78892 1.928339103 0.104463 26 81 SH4806 4806 snR5 201-204 + 3' 201 34.714471 151.232299 92.973385 1.968358643 0.298642 26 82 SH10837 10837 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1071 1087 174.036902 273.286941 223.6619215 2.349592052 0.603497 26 83 SH10105 10105 RUF6 RUF6 371 388 30.731072 155.722168 93.22662 1.969539939 0.032173 26 84 SH9483 9483 RUF2 256-268 + 3' 256 41.085433 174.348492 107.7169625 2.032284098 0.280067 26 85 SH14054 14054 MT COB Cytbi4 28.588264 196.160814 28.588264 168.57255 98.580407 1.993790607 -0.182059 26 86 SH8201 8201 snoRNA cluster 3; intergenic 34.64081 210.655076 34.64081 177.014266 105.827538 2.024598693 0.090535 26 87 SH21561 21561 copy of SH4991 30.347971 157.066207 93.707089 1.971772447 -0.000822 26 88 SH6272 6272 snR42 snR42 141 157 32.157601 152.879929 92.518765 1.966229827 0.141262 26 89 SH8088 8088 snoRNA cluster 2 3' 31.887894 185.941436 31.887894 155.053542 93.470718 1.970675579 0.112346 26 90 SH2003 2003 Lys3 5' flank 31.595446 176.259285 103.9273655 2.016729918 -0.032939 26 91 SH7069 7069 snR62 3' 32.280509 183.059207 107.669858 2.03209414 -0.050665 26 92 SH8301 8301 snoRNA cluster4 intergenic 32.948017 172.02615 32.948017 140.078133 86.513075 1.937081749 0.262499 26 93 SH5845 5845 snR35 snR35 411 430 30.700612 148.194779 89.4476955 1.951569156 0.070252 26 94 SH21101 21101 YNL050C spliced 29.470915 155.469969 92.470442 1.966002934 -0.053407 26 95 SH9785 9785 RUF4 RUF4 701 722 28.28397 134.025584 81.154777 1.909314089 -0.022713 26 96 SH13407 13407 MT COX1 intronic 29.978877 189.658471 29.978877 160.679594 95.3292355 1.97922611 -0.044642 26 97 SH14514 14514 MT 21S rRNA 21S rRNA3 48.675192 258.384957 48.675192 210.709765 129.6924785 2.11291479 -0.037935 26 98 SH18995 18995 YOR122C_15_552886_552297_INTRON_14_222 intron 72.034927 312.920543 72.034927 241.885616 156.9602715 2.195789741 -0.020987 26 99 SH2953 2953 Ser1 5' flank - tRNA12 12 131.233925 296.465595 213.84976 2.330108767 0.160456 26 100 SH9614 9614 RUF3 3' 31.299355 166.277729 98.788542 1.994706576 0.00869 26 101 SH3452 3452 Trp1 91-106 + 3' flank 91 34.94408 163.848373 99.3962265 1.997369897 0.229559 26 102 SH21047 21047 YMR142C spliced 34.881131 174.889638 104.8853845 2.020714975 0.119194 26 103 SH11411 11411 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3941 3957 42.298282 166.110139 104.2042105 2.017885268 0.406072 26 104 SH14625 14625 MT 21S rRNA Sce1 endonuc 31.073215 189.347864 31.073215 159.274649 95.173932 1.978518012 0.036878 27 2 SH17352 17352 YIL018W_9_316766_317930_INTRON_5_404 intron/exon 32.386606 193.666169 32.386606 162.279563 97.3330845 1.988260486 0.097253 27 3 SH9679 9679 RUF4 RUF4 171 190 30.161188 177.952154 104.056671 2.017269928 -0.129496 27 4 SH12535 12535 MT_ORF6 + ORF7 (hypothetical) ORF6/7 30.131735 166.30566 30.131735 137.173925 83.65283 1.922480638 0.092474 27 5 SH2833 2833 Pro7 5' flank 30.103227 167.097702 98.6004645 1.993878961 -0.069149 27 6 SH15761 15761 YCR031C_3_178212_177492_INTRON_8_314 intron 34.429963 222.747399 34.429963 189.317436 111.8736995 2.048728 -0.030167 27 7 SH897 897 Glu3 5' flank - tRNA15 15 270.852439 398.661741 334.75709 2.524729784 0.423908 27 8 SH17610 17610 YJL205C-A_10_50443_50139_INTRON_33_175 3' exon 38.732277 204.649761 38.732277 166.917484 102.8248805 2.012098213 0.323379 27 9 SH1559 1559 Leu4 5' flank 30.029991 144.306059 87.168025 1.940357206 0.04585 27 10 SH14417 14417 MT 21S rRNA 21S rRNA3 27.849701 204.943548 27.849701 178.093847 102.971774 2.012718195 -0.280888 27 11 SH21159 21159 YNL301C spliced 43.00473 150.796793 96.9007615 1.98632719 0.620116 27 12 SH17029 17029 YGR183C_7_859471_859058_INTRON_4_216 5' exon 32.119963 231.6454 32.119963 200.525437 116.3227 2.065664474 -0.210418 27 13 SH2832 2832 Pro7 5' flank 29.903823 152.34642 91.1251215 1.95963812 -0.006703 27 14 SH17107 17107 YHR001W-A_8_107819_108115_INTRON_7_69 5' exon 31.982317 222.385 31.982317 191.402683 111.6925 2.048024012 -0.136992 27 15 SH17872 17872 YLL050C_12_40413_39803_INTRON_15_193 3' exon 34.02735 205.698777 34.02735 172.671427 103.3493885 2.014307911 0.111047 27 16 SH7551 7551 snR79 3' 29.619976 172.652673 101.1363245 2.004907166 -0.132629 27 17 SH12421 12421 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.626237 200.780648 31.626237 170.154411 100.890324 2.003849517 0.004696 27 18 SH18103 18103 YLR367W_12_855877_857316_INTRON_698_1180 intron 27.25655 167.536765 27.25655 141.280215 84.2683825 1.925664658 -0.141721 27 19 SH18607 18607 YNL069C_14_494998_493953_INTRON_29_477 intron 29.26888 205.585995 29.26888 177.317115 103.2929975 2.014070881 -0.182004 27 20 SH10575 10575 RUF8 RUF8 801 815 46.082244 175.747052 110.914648 2.044988905 0.336725 27 21 SH940 940 Gly1 5' flank 29.153033 158.163391 93.658212 1.971545863 -0.089828 27 22 SH4898 4898 snR8 3' 58.730033 224.741974 141.7360035 2.151480183 -0.040634 27 23 SH21269 21269 YPL081W spliced 33.435038 183.563643 108.4993405 2.035427098 -0.013212 27 24 SH20146 20146 YDL115C spliced 29.312395 156.568057 92.940226 1.968203724 -0.070302 27 25 SH18903 18903 YOL120C_15_94401_93394_INTRON_113_559 intron 29.43764 189.847119 29.43764 161.409479 95.4235595 1.979655613 -0.086124 27 26 SH12536 12536 MT_ORF6 + ORF7 (hypothetical) ORF6/7 33.849294 210.356218 33.849294 177.506924 105.678109 2.023985033 0.058156 27 27 SH862 862 Glu2 3' flank 29.723332 155.956464 92.839898 1.967734655 -0.038239 27 28 SH4935 4935 snR9 snR9 81 98 44.970425 219.962299 132.466362 2.122105609 -0.186252 27 29 SH16615 16615 YFL039C_6_54695_53260_INTRON_11_318 exon/intron 32.144727 190.796129 32.144727 159.651402 95.8980645 1.981809842 0.099828 27 30 SH18525 18525 YMR225C_13_721402_720959_INTRON_59_205 intron 36.600855 242.788302 36.600855 207.187447 121.894151 2.085982867 -0.177624 27 31 SH8470 8470 snoRNA cluster 5 3' 34.520524 221.538927 34.520524 188.018403 111.2694635 2.046375994 -0.015401 27 32 SH2545 2545 Pro2 5' flank 28.045331 131.13062 79.5879755 1.900847458 -0.02212 27 33 SH5530 5530 snR33 5' 30.264474 166.525514 98.394994 1.992973004 -0.055677 27 34 SH10743 10743 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 601 617 32.466904 184.34833 108.407617 2.035059798 -0.05561 27 35 SH13022 13022 MT COX1 COX1ai2 30.273387 189.031277 30.273387 159.75789 95.0156385 1.977795091 -0.019694 27 36 SH14494 14494 MT 21S rRNA 21S rRNA3 41.169543 244.260227 41.169543 204.090684 122.6301135 2.08859713 -0.072616 27 37 SH15185 15185 MT COX3 cox3 32.36031 209.784159 32.36031 178.423849 105.3920795 2.022807974 -0.004428 27 38 SH5094 5094 snR11 snR11 71 87 210.928905 424.119334 317.5241195 2.50177672 0.028397 27 39 SH21256 21256 YPL075W spliced 32.165948 176.198379 104.1821635 2.017793372 0.000866 27 40 SH17923 17923 YLR078C_12_286560_285737_INTRON_4_92 exon/intron 2756.222329 4357.091472 2756.222329 1601.869143 2179.045736 3.338266346 1.098321 27 41 SH18865 18865 YNR053C_14_723108_721117_INTRON_811_1341 intron 31.923619 209.145131 31.923619 178.221512 105.0725655 2.021489336 -0.02487 27 42 SH13574 13574 MT COX1 Exon 6 31.801429 211.718538 31.801429 180.917109 106.359269 2.026775344 -0.048715 27 43 SH1736 1736 Leu7 5' flank 31.684126 179.507697 105.5959115 2.023647103 -0.046253 27 44 SH39 39 Ala1 3' flank 33.699887 165.868266 99.7840765 1.999061242 0.149337 27 45 SH15642 15642 YBR186W_2_600511_602318_INTRON_1552_1664 3' exon 31.467668 210.508698 31.467668 180.04103 105.754349 2.024298236 -0.062082 27 46 SH8135 8135 snoRNA cluster 3; snR41/intergenic 31.367201 176.15794 31.367201 145.790739 88.57897 1.947330626 0.128079 27 47 SH18671 18671 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.165258 182.071688 29.165258 153.90643 91.535844 1.96159119 -0.066855 27 48 SH9128 9128 snR7 U5 RNA 5' 31.175766 191.246 111.210883 2.046147289 -0.166208 27 49 SH3161 3161 Ser5 5' flank 33.175227 189.195989 111.185608 2.046048575 -0.073556 27 50 SH10532 10532 RUF8 RUF8 586 607 30.984323 145.074649 88.029486 1.944628166 0.10658 27 51 SH21196 21196 YOL121C spliced 35.044268 165.69435 100.369309 2.001600934 0.215923 27 52 SH1268 1268 Ile2 tRNA exon/intron 36 52 30.771295 152.16637 91.4688325 1.961273136 0.0536 27 53 SH18674 18674 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.588621 167.888313 28.588621 140.299692 84.4441565 1.926569602 -0.035802 27 54 SH18373 18373 YMR079W_13_424988_426058_INTRON_10_165 intron/exon 80.159054 344.318287 80.159054 265.159233 172.6591435 2.237189582 -0.107463 27 55 SH15455 15455 YBL087C_2_60732_59815_INTRON_43_546 intron 33.47366 227.239271 33.47366 194.765611 114.1196355 2.057360376 -0.111787 27 56 SH10959 10959 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1681 1701 18762.78851 10543.37768 14653.08309 4.165929012 0.606544 27 57 SH2064 2064 Lys4 5' flank - tRNA3 3 32.200278 195.524456 113.862367 2.056380208 -0.164809 27 58 SH8152 8152 snoRNA cluster 3; intergenic 30.073848 197.344057 30.073848 168.270209 99.1720285 1.996389197 -0.078079 27 59 SH21049 21049 YMR142C spliced 30.000299 164.218811 97.109555 1.987261964 -0.06081 27 60 SH10564 10564 RUF8 RUF8 746 761 38.024773 163.969932 100.9973525 2.00430999 0.331359 27 61 SH16477 16477 YER102W_5_362729_363698_INTRON_1_360 intron 40.002353 233.129744 40.002353 194.127391 117.064872 2.068426595 0.0245 27 62 SH2735 2735 Pro5 tRNA-intron/exon 56 71 70.356511 282.801155 176.578833 2.246938642 -0.354324 27 63 SH15530 15530 YBR048W_2_332790_333771_INTRON_46_556 3' exon 94.763087 323.675003 94.763087 229.911916 162.3375015 2.210418858 0.327006 27 64 SH16062 16062 YDL219W_4_65243_65766_INTRON_66_136 intron/exon 31.903106 188.158635 31.903106 157.255529 94.5793175 1.975796176 0.101086 27 65 SH2159 2159 Met2 5' flank 29.888308 178.343794 104.116051 2.017517687 -0.14872 27 66 SH15221 15221 MT COX3 cox3 29.88283 150.775862 29.88283 121.893032 75.887931 1.880172712 0.168938 27 67 SH11531 11531 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4541 4558 6219.274189 3671.964278 4945.619234 3.694220677 0.855241 27 68 SH4092 4092 SRP RNA SRP RNA 351 367 29.853904 139.585216 84.71956 1.927983692 0.059384 27 69 SH7394 7394 snR68 3' 60.075521 222.776763 141.426142 2.150529694 -0.003984 27 70 SH12827 12827 MT COX1 COX1ai1 29.80807 183.323459 29.80807 154.515389 92.1617295 1.964550616 -0.024811 27 71 SH10104 10104 RUF6 RUF6 366 385 29.786778 131.686425 80.7366015 1.907070464 0.100039 27 72 SH17572 17572 YJL189W_10_75932_76473_INTRON_7_392 3' exon 31.778182 203.175877 31.778182 172.397695 102.0879385 2.008974434 0.000349 27 73 SH8247 8247 snoRNA cluster4 5' 31.777075 166.231627 31.777075 135.454552 83.6158135 1.922288419 0.214276 27 74 SH21230 21230 YOR234C spliced 33.803815 192.382051 113.092933 2.053435467 -0.07925 27 75 SH13898 13898 MT COB intronic 31.840052 204.921579 31.840052 174.081527 102.9607895 2.012671864 -0.00589 27 76 SH10424 10424 RUF8 RUF8 46 63 35.947418 153.095595 94.5215065 1.975530635 0.351443 27 77 SH881 881 Glu3 5' flank 32.020288 167.227072 99.62368 1.99836258 0.045476 27 78 SH7760 7760 snoRNA cluster1 snR76 34.18664 192.044549 34.18664 158.857909 96.5222745 1.984627547 0.22002 27 79 SH19343 19343 YPL249C-A_16_76239_75699_INTRON_17_254 5' exon 103.029108 400.445143 103.029108 298.416035 200.7225715 2.302596212 -0.095148 27 80 SH11839 11839 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6081 6098 10747.93307 4501.413031 7624.673051 3.882221226 1.239915 27 81 SH5616 5616 snR34 snR34 1 17 35.71577 149.167712 92.441741 1.965868116 0.365765 27 82 SH21416 21416 Ser4 spliced 34.812366 172.552211 103.6822885 2.015704574 0.139535 27 83 SH9675 9675 RUF4 RUF4 151 166 30.744513 177.715376 104.2299445 2.017992507 -0.092334 27 84 SH13561 13561 MT COX1 Exon 6 28.686151 164.951377 28.686151 137.265226 82.9756885 1.918950865 -0.011589 27 85 SH15981 15981 YDL136W_4_217600_218367_INTRON_4_408 intron 30.709719 189.210569 30.709719 159.50085 95.1052845 1.978204649 0.011308 27 86 SH6339 6339 snR43 5' 30.602475 173.555786 102.0791305 2.008936962 -0.076928 27 87 SH3832 3832 RNaseP RNaseP 126 142 30.440951 132.486918 81.4639345 1.910965382 0.14107 27 88 SH9264 9264 snR6 / U6 RNA 3' 30.233643 191.251432 110.7425375 2.04431447 -0.203015 27 89 SH21653 21653 copy of SH8773 29.990933 144.75218 87.3715565 1.941370073 0.040703 27 90 SH8711 8711 LSR1 / U2 RNA U2 196 212 29.72415 127.784779 78.7544645 1.896275183 0.119045 27 91 SH8136 8136 snoRNA cluster 3; snR41/intergenic 30.436596 172.530459 30.436596 143.093863 86.7652295 1.93834572 0.080703 27 92 SH18955 18955 YOL127W_15_80347_81189_INTRON_14_427 intron 72.61208 276.821797 72.61208 205.209717 138.9108985 2.14273632 0.320577 27 93 SH12534 12534 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.890381 173.989203 28.890381 146.098822 87.4946015 1.941981257 -0.045252 27 94 SH20758 20758 YJR094W-A spliced 846.967575 1284.359921 1065.663748 3.027620192 -0.091942 27 95 SH12134 12134 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7556 7569 34.13769 162.452496 98.295093 1.992531838 0.194607 27 96 SH12213 12213 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.68565 193.013995 37.68565 156.328345 97.0069975 1.986803063 0.401161 27 97 SH3379 3379 Thr4 5' flank - tRNA1 1 27.987653 152.051114 90.0193835 1.954336034 -0.143231 27 98 SH12289 12289 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.572159 180.937994 31.572159 150.365835 90.968997 1.958893406 0.116564 27 99 SH21454 21454 copy of SH463 33.277218 177.656446 105.466832 2.023115901 0.036316 27 100 SH1340 1340 Ile3 tRNA-intron 81 97 33.129335 182.033753 107.581544 2.031737773 -0.010093 27 101 SH10632 10632 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 46 62 33.003909 144.562483 88.783196 1.948330775 0.240489 27 102 SH19689 19689 Negative Control 32.897962 171.839137 102.3685495 2.01016655 0.068384 27 103 SH17974 17974 YLR211C_12_564531_563792_INTRON_19_77 5' exon 30.95712 196.051893 30.95712 166.094773 98.5259465 1.993550616 -0.010744 27 104 SH12970 12970 MT COX1 COX1ai2 30.880158 191.647138 30.880158 161.76698 96.323569 1.983732566 0.011366 28 2 SH15865 15865 YDL079C_4_314747_312950_INTRON_413_704 intron 32.294272 192.625126 32.294272 161.330854 96.812563 1.985931718 0.097873 28 3 SH15510 15510 YBR048W_2_332790_333771_INTRON_46_556 intron 32.256591 221.116573 32.256591 189.859982 111.0582865 2.045550969 -0.113107 28 4 SH879 879 Glu3 5' flank 30.039497 168.421454 99.2304755 1.996645072 -0.081128 28 5 SH4751 4751 snR5 5' 698.607355 1046.691873 872.649614 2.940839901 -0.007537 28 6 SH7552 7552 snR79 3' 29.974943 176.114674 103.0448085 2.013026116 -0.13053 28 7 SH1324 1324 Ile3 tRNA 1 13 29.948919 153.798111 91.873515 1.963190332 -0.011258 28 8 SH977 977 Gly1 3' flank 32.089676 156.170308 94.129992 1.973728022 0.119022 28 9 SH5395 5395 snR31 snR31 41 59 29.910151 146.61359 88.2618705 1.945773127 0.024808 28 10 SH15232 15232 MT COX3 cox3 / 3' 36.370328 231.179974 36.370328 195.809646 116.089987 2.064794763 -0.059002 28 11 SH18826 18826 YNL302C_14_62942_61957_INTRON_21_571 intron 51.485631 225.25845 51.485631 174.772819 113.129225 2.053574812 0.417137 28 12 SH18863 18863 YNR053C_14_723108_721117_INTRON_811_1341 intron 31.983171 191.932165 31.983171 160.948994 96.4660825 1.984374642 0.082185 28 13 SH5199 5199 snR13 3' 29.77569 159.268176 94.521933 1.975532594 -0.051609 28 14 SH20191 20191 YDL219W spliced 29.701475 181.317044 105.5092595 2.023290575 -0.177241 28 15 SH11073 11073 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2251 2268 36.02379 145.857358 90.940574 1.958757691 0.404619 28 16 SH17822 17822 YKR057W_11_551293_551878_INTRON_25_346 intron 75.517978 300.29279 75.517978 225.774812 150.646395 2.177958743 0.15934 28 17 SH14384 14384 MT ORF9 and ORF10 (hypothetical) 3' 29.381792 205.324472 29.381792 176.94268 103.162236 2.013520747 -0.172658 28 18 SH5516 5516 snR32 3' 35.613737 147.945986 91.7798615 1.962747398 0.368773 28 19 SH12529 12529 MT_ORF6 + ORF7 (hypothetical) ORF6/7 27.073955 159.140462 27.073955 133.066507 80.070231 1.903471081 -0.106762 28 20 SH6387 6387 snR43 snR43 176 193 29.119816 128.11186 78.615838 1.895510048 0.074505 28 21 SH15459 15459 YBL087C_2_60732_59815_INTRON_43_546 intron 29.104964 180.073062 29.104964 151.968098 90.536531 1.95682385 -0.060883 28 22 SH1663 1663 Leu5 3' flank 33.347192 132.705892 83.026542 1.91921695 0.331288 28 23 SH5643 5643 snR34 snR34 136 153 29.222437 155.194383 92.20841 1.964770533 -0.069542 28 24 SH2736 2736 Pro5 tRNA-intron/exon 61 75 44.196276 208.137761 126.1670185 2.10094584 -0.072966 28 25 SH4805 4805 snR5 196-204 + 3' 196 31.623674 151.955523 91.7895985 1.96279347 0.111428 28 26 SH19926 19926 YBL018C spliced 29.656372 150.707751 90.1820615 1.955120159 -0.015187 28 27 SH14363 14363 MT ORF9 and ORF10 (hypothetical) ORF9 29.813974 194.211165 29.813974 165.397191 97.6055825 1.989474658 -0.079531 28 28 SH20739 20739 YJL191W spliced 32.118098 178.645789 105.3819435 2.022766204 -0.015932 28 29 SH2412 2412 Phe4 3' flank 27.907181 120.404996 74.1560885 1.870146814 0.038444 28 30 SH8816 8816 LSR1 / U2 RNA U2 721 738 30.171005 155.453069 92.812037 1.967604304 -0.004596 28 31 SH10154 10154 RUF6 RUF6 616 637 30.241449 152.401396 91.3214225 1.960572668 0.016304 28 32 SH13859 13859 MT COB Cytbi2 30.289563 182.1188 30.289563 152.829237 91.5594 1.961702938 0.017333 28 33 SH21092 21092 YNL012W spliced 36.886431 195.511617 116.199024 2.06520248 -0.045715 28 34 SH17239 17239 YHR079C-A_8_262554_262193_INTRON_114_199 intron 34.702683 210.763797 34.702683 177.061114 105.8818985 2.02482172 0.092227 28 35 SH21151 21151 YNL265C spliced 32.494815 165.926376 99.2105955 1.996558056 0.080909 28 36 SH21091 21091 YNL012W spliced 34.636659 195.197779 114.917219 2.060385108 -0.08674 28 37 SH16897 16897 YGL226C-A_7_73156_72747_INTRON_22_170 intron 38.925717 243.192358 38.925717 205.266641 122.096179 2.086702073 -0.11938 28 38 SH6828 6828 snR52 snR52 46 64 34.452177 173.27512 103.8636485 2.016463574 0.120021 28 39 SH4361 4361 telomerase RNA telomerase 841 853 32.155812 174.379207 103.2675095 2.013963703 0.010821 28 40 SH21104 21104 YNL050C spliced 36.335558 207.778452 122.057005 2.086562709 -0.188892 28 41 SH18753 18753 YNL162W_14_331319_332151_INTRON_5_516 intron 42.629266 218.310097 42.629266 176.680831 109.6550485 2.040028631 0.277223 28 42 SH1755 1755 Leu7 tRNA 71 83 51.026048 173.579523 112.3027855 2.050390528 0.426853 28 43 SH20887 20887 YLR275W spliced 29.481317 139.27999 84.3806535 1.926242885 0.03464 28 44 SH15077 15077 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.369246 171.976818 29.369246 143.607572 86.488409 1.936957908 0.002774 28 45 SH4588 4588 U3b (snR17b) 3' 29.267967 153.429883 91.348925 1.960703441 -0.057048 28 46 SH197 197 Arg2 3' flank 31.28305 158.414428 94.848739 1.977031561 0.055232 28 47 SH20583 20583 YHR016C spliced 37.504205 189.08368 113.2939425 2.05420669 0.038843 28 48 SH5811 5811 snR35 snR35 241 259 41.610377 193.048889 117.329633 2.069407712 0.060884 28 49 SH16285 16285 YDR447C_4_1355542_1354818_INTRON_4_317 3' exon 35.226369 218.312417 35.226369 184.086048 109.6562085 2.040033226 0.044513 28 50 SH342 342 Arg5 tRNA 46 60 30.968546 145.070366 88.019456 1.94457868 0.105547 28 51 SH17371 17371 YIL052C_9_257061_256224_INTRON_38_509 intron 39.221927 222.908936 39.221927 184.687009 111.954468 2.049041431 0.121766 28 52 SH14955 14955 MT tRNA Met 3' 28.727174 185.276988 28.727174 157.549814 93.138494 1.969129211 -0.117218 28 53 SH7542 7542 snR79 snR79 51 68 30.699768 177.078905 103.8893365 2.016570973 -0.091412 28 54 SH3103 3103 Ser4 5' flank 34.709349 161.452624 98.0809865 1.991584825 0.231925 28 55 SH1495 1495 Leu3 5' flank 32.516878 181.796688 107.156783 2.030019667 -0.030247 28 56 SH10852 10852 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1146 1164 244.99119 502.381871 373.6865305 2.572507444 -0.089512 28 57 SH18820 18820 YNL302C_14_62942_61957_INTRON_21_571 intron 30.221616 191.192314 30.221616 161.970698 96.096157 1.98270602 -0.03439 28 58 SH5842 5842 snR35 snR35 396 413 30.116213 151.292666 90.7044395 1.957628544 0.013607 28 59 SH3284 3284 Thr2 tRNA 21 33 36.102233 182.461128 109.2816805 2.038547365 0.088895 28 60 SH7373 7373 snR68 snR68 86 107 29.964569 144.194814 87.0796915 1.939916882 0.041858 28 61 SH5459 5459 snR32 5' 29.921359 157.092414 93.5068865 1.970843597 -0.030338 28 62 SH19391 19391 YPR043W_16_654161_654842_INTRON_3_405 intron 29.897252 181.201325 29.897252 152.304073 91.1006625 1.959521535 -0.006934 28 63 SH17134 17134 YHR010W_8_126513_127484_INTRON_32_592 intron 29.88755 183.558394 29.88755 154.670844 92.279197 1.965103807 -0.020099 28 64 SH4455 4455 telomerase RNA 3' 37.945471 195.206911 116.576191 2.066609861 -0.022292 28 65 SH4499 4499 U3b (snR17b) U3b 51 68 31.901118 193.234887 112.5680025 2.05141496 -0.156114 28 66 SH21079 21079 YMR230W spliced 35.930085 160.1995 98.0647925 1.991513114 0.302736 28 67 SH10063 10063 RUF6 RUF6 161 180 33.90774 181.148037 107.5278885 2.031521118 0.025959 28 68 SH1946 1946 Lys2 5' flank 29.868505 146.460904 88.1647045 1.945294756 0.022761 28 69 SH2181 2181 Met2 tRNA 36 50 50.001117 179.09092 114.5460185 2.058979998 0.343632 28 70 SH20179 20179 YDL189W spliced 31.834922 162.249194 97.042058 1.986959998 0.065325 28 71 SH20938 20938 YLR406C spliced 31.810107 182.499975 107.155041 2.030012607 -0.063087 28 72 SH4976 4976 snR10 5' 31.790367 191.39097 111.5906685 2.047627879 -0.1441 28 73 SH9529 9529 RUF3 RUF3 31 47 37.805967 214.629762 126.2178645 2.101120828 -0.23883 28 74 SH12691 12691 MT ORF 8 (hypothetical) 5' 29.784761 190.548869 29.784761 161.764108 95.7744345 1.981249596 -0.063573 28 75 SH5149 5149 snR13 5' 31.824929 153.838695 92.831812 1.967696828 0.114616 28 76 SH2400 2400 Phe4 tRNA-intron/exon 51 66 1407.799288 1757.243661 1582.521475 3.199349612 0.068635 28 77 SH6569 6569 snR47 5' 34.006185 213.152344 123.5792645 2.091945606 -0.291378 28 78 SH1826 1826 Leu8 3' flank 32.114346 153.430682 92.772514 1.967419326 0.135555 28 79 SH5333 5333 snR30 snR30 516 532 36.345996 154.790363 95.5681795 1.980313313 0.360871 28 80 SH1882 1882 Leu9 3' flank 105.441132 267.3378 186.389466 2.270421364 0.137226 28 81 SH1088 1088 Gly4 5' flank 38.77189 227.125942 132.948916 2.123684801 -0.352606 28 82 SH17313 17313 YHR203C_8_505526_504472_INTRON_15_283 intron 32.723572 212.558463 32.723572 180.834891 106.7792315 2.028486791 -0.013705 28 83 SH11140 11140 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2586 2599 115.892669 272.867253 194.379961 2.288651491 0.191118 28 84 SH6422 6422 snR45 5' 30.769995 169.22466 99.9973275 1.999988393 -0.041046 28 85 SH19622 19622 RNA14 1.1 32.81074 197.021612 114.916176 2.060381166 -0.155182 28 86 SH14906 14906 MT tRNA Ile 3' 28.585135 174.03263 28.585135 146.447495 87.516315 1.942089023 -0.06948 28 87 SH15621 15621 YBR181C_2_592732_591670_INTRON_7_358 intron 30.502827 195.764826 30.502827 166.261999 98.382413 1.99291747 -0.039403 28 88 SH17381 17381 YIL052C_9_257061_256224_INTRON_38_509 intron/exon 34.395679 207.09481 34.395679 173.699131 104.047405 2.017231253 0.113931 28 89 SH99 99 Ala2 3' flank 32.107443 191.169364 111.6384035 2.047813617 -0.130256 28 90 SH3677 3677 Val2 3' flank 33.847054 194.948104 114.397579 2.058416834 -0.100267 28 91 SH65 65 Ala2 5' flank 35.537238 160.851393 98.1943155 1.992086347 0.279781 28 92 SH15370 15370 YBL027W_2_168385_169338_INTRON_3_386 intron 34.223075 233.166187 34.223075 199.943112 117.0830935 2.068494189 -0.147551 28 93 SH18733 18733 YNL147W_14_350937_351380_INTRON_19_138 3' exon 29.020955 188.091631 29.020955 160.070676 94.5458155 1.975642312 -0.108962 28 94 SH3180 3180 Ser5 tRNA 21 35 52.095965 213.760856 132.9284105 2.123617812 -0.022837 28 95 SH20865 20865 YLR093C spliced 29.486406 150.456078 89.971242 1.954103716 -0.025761 28 96 SH10652 10652 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 146 163 32.117956 193.925786 113.021871 2.053162492 -0.154021 28 97 SH9613 9613 RUF3 3' 28.096104 147.24433 87.670217 1.942852082 -0.110052 28 98 SH3212 3212 Thr1 5' flank 35.441756 170.83214 103.136948 2.013414276 0.177905 28 99 SH1160 1160 His1 tRNA 21 37 96.359502 223.855979 160.1077405 2.204412329 0.394774 28 100 SH20933 20933 YLR388W spliced 33.172018 189.648865 111.4104415 2.046925895 -0.077706 28 101 SH4084 4084 SRP RNA SRP RNA 311 323 33.011061 175.609344 104.3102025 2.018326789 0.046253 28 102 SH21146 21146 YNL246W spliced 36.576431 196.427569 116.502 2.066333381 -0.061866 28 103 SH19206 19206 YPL081W_16_404945_406039_INTRON_8_508 intron 73.714256 316.545103 73.714256 243.830847 158.7725515 2.200775424 -0.016581 28 104 SH14355 14355 MT ORF9 and ORF10 (hypothetical) 5' / ORF9 36.334479 237.949842 36.334479 202.615363 119.474921 2.077276752 -0.13411 29 2 SH9750 9750 RUF4 RUF4 526 541 32.140737 175.896946 104.0188415 2.017112013 0.00114 29 3 SH19722 19722 Negative Control 32.109115 167.539747 99.824431 1.999236843 0.048756 29 4 SH5587 5587 snR33 3' 29.906105 159.035646 94.4708755 1.97529794 -0.041355 29 5 SH8434 8434 snoRNA cluster 5 intergenic 32.037052 197.920224 32.037052 166.883172 99.460112 1.997648944 0.048546 29 6 SH11197 11197 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2871 2891 49.321364 190.684163 120.0027635 2.079191247 0.193808 29 7 SH8580 8580 snR19 / U1 RNA U1 396 410 2917.579132 2258.944675 2588.261904 3.41300822 0.635583 29 8 SH10868 10868 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1226 1239 31.950743 197.002542 114.4766425 2.058716883 -0.186837 29 9 SH6739 6739 snR49 3' 27.631384 127.78496 77.708172 1.890466693 -0.031283 29 10 SH7472 7472 snR71 5' 29.761469 176.334276 103.0478725 2.01303903 -0.145157 29 11 SH3361 3361 Thr3 3' flank 34.032242 198.454993 116.2436175 2.065369117 -0.135237 29 12 SH6215 6215 snR40 3' 31.845966 160.869201 96.3575835 1.9838859 0.074652 29 13 SH21051 21051 YMR143W spliced 31.791143 161.729701 96.760422 1.985697754 0.066011 29 14 SH20527 20527 YGR118W spliced 31.716818 175.782172 103.749495 2.015985991 -0.023017 29 15 SH2248 2248 Phe1 3' flank 27.366976 139.285911 83.3264435 1.920782846 -0.122127 29 16 SH13182 13182 MT COX1 Exon4 31.517648 181.025617 31.517648 150.507969 91.0128085 1.959102516 0.112213 29 17 SH1309 1309 Ile3 5' flank 27.17986 138.438839 82.8093495 1.918079373 -0.131534 29 18 SH8527 8527 snR19 / U1 RNA U1 131 147 46.098423 203.43039 124.7644065 2.096090705 0.005282 29 19 SH14158 14158 MT COB intronic 35.440556 234.17991 35.440556 199.739354 117.589955 2.070370224 -0.120599 29 20 SH5036 5036 snR10 snR10 211 223 164.403329 369.770976 267.0871525 2.426652998 -0.006818 29 21 SH12465 12465 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 34110.28602 57105.1109 34110.28602 22995.82488 28553.05545 4.455652589 0.141657 29 22 SH14080 14080 MT COB Cytbi4 39.70276 209.974578 39.70276 171.271818 105.487289 2.023200131 0.294624 29 23 SH6571 6571 snR47 5' 48.330559 206.45697 127.3937645 2.105148171 0.002104 29 24 SH9034 9034 snR17a / U3a U3a 456 468 597.527499 718.80646 658.1669795 2.81833609 0.406722 29 25 SH12070 12070 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7236 7254 29.585962 142.683497 86.1347295 1.935178294 0.023288 29 26 SH14058 14058 MT COB Cytbi4 29.76036 203.560255 29.76036 174.799895 102.2801275 2.009791261 -0.136347 29 27 SH9138 9138 snR7 U5 RNA 5' 32.084771 145.144281 88.614526 1.947504919 0.17862 29 28 SH12977 12977 MT COX1 COX1ai2 34.409907 232.717356 34.409907 199.307449 116.858678 2.067660969 -0.136764 29 29 SH11623 11623 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5001 5018 36.723024 168.000319 102.3616715 2.010137369 0.248654 29 30 SH7798 7798 snoRNA cluster1 snR75 34.639914 241.821597 34.639914 208.181683 121.4107985 2.084257315 -0.226925 29 31 SH3578 3578 Tyr2 3' flank 30.327617 169.239374 99.7834955 1.999058714 -0.068205 29 32 SH8141 8141 snoRNA cluster 3; intergenic 2337.03758 4290.062447 2337.03758 1954.024867 2145.531224 3.331534839 0.569552 29 33 SH11010 11010 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1936 1954 72.239602 190.733461 131.4865315 2.118881269 0.467818 29 34 SH9345 9345 RUF1 RUF1 301 317 39.156285 148.748319 93.952302 1.972907426 0.530891 29 35 SH3267 3267 Thr2 5' flank 30.352838 188.841622 109.59723 2.039799578 -0.178 29 36 SH3620 3620 Val1 3' flank 30.305154 149.445565 89.8753595 1.953640641 0.036538 29 37 SH13636 13636 MT ATP6 ATP6 30.230911 216.928562 30.230911 187.697651 108.964281 2.037284158 -0.179351 29 38 SH13023 13023 MT COX1 COX1ai2 36.659583 230.586738 36.659583 194.927155 115.793369 2.06368369 -0.043559 29 39 SH8487 8487 snR19 / U1 RNA 5' 32.173975 167.995365 100.08467 2.000367562 0.04977 29 40 SH8907 8907 LSR1 / U2 RNA 3' 29.870858 129.826767 79.8488125 1.902268462 0.11706 29 41 SH7796 7796 snoRNA cluster1 snR75 66.356125 295.405913 66.356125 230.049788 148.2029565 2.170856867 0.010848 29 42 SH9548 9548 RUF3 RUF3 126 145 29.587601 174.093475 101.840538 2.007920685 -0.143116 29 43 SH11136 11136 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2566 2583 66.818377 217.091474 141.9549255 2.152150466 0.136263 29 44 SH5641 5641 snR34 snR34 126 141 33.57349 185.401046 109.487268 2.039363619 -0.025069 29 45 SH17776 17776 YKL180W_11_109271_110131_INTRON_310_615 intron 33.454401 213.924362 33.454401 181.469961 107.462181 2.031255651 0.006838 29 46 SH5896 5896 snR36 5' 29.144116 170.482925 99.8135205 1.999189374 -0.151225 29 47 SH5818 5818 snR35 snR35 276 291 41.677168 189.005779 115.3414735 2.061985495 0.110215 29 48 SH20586 20586 YHR021C spliced 33.194324 158.968883 96.0816035 1.982640242 0.164245 29 49 SH14545 14545 MT 21S rRNA 21S rRNA3 33.131146 190.975544 33.131146 158.844398 95.987772 1.982215911 0.16148 29 50 SH20686 20686 YIL133C spliced 39.340372 159.891183 99.6157775 1.998328129 0.414611 29 51 SH4832 4832 snR8 5' 28.839761 133.563455 81.201608 1.909564629 0.020963 29 52 SH13611 13611 MT ATP8/AAP1 3' 28.77158 186.696703 28.77158 158.925123 93.8483515 1.972426648 -0.121053 29 53 SH5044 5044 snR10 3' 30.75966 183.142341 106.9510005 2.029184852 -0.121975 29 54 SH2080 2080 Lys4 tRNA 66 80 219.887007 401.785139 310.836073 2.492531414 0.170334 29 55 SH56 56 Ala2 5' flank 29.506982 163.080051 96.2935165 1.983597047 -0.089582 29 56 SH20996 20996 YML085C spliced 30.409906 153.073156 91.741531 1.962565983 0.02427 29 57 SH5097 5097 snR11 snR11 86 106 28.247878 148.923295 88.5855865 1.947363065 -0.107541 29 58 SH13831 13831 MT COB Cytbi2 30.175165 177.347432 30.175165 148.172267 89.173716 1.950236865 0.034548 29 59 SH6352 6352 snR43 snR43 1 15 55.489232 190.123123 122.8061775 2.089220214 0.278106 29 60 SH9014 9014 snR17a / U3a U3a 356 371 30.00923 145.125593 87.5674115 1.942342512 0.039935 29 61 SH15038 15038 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.943313 154.845674 27.943313 127.902361 77.922837 1.891664756 -0.008957 29 62 SH11190 11190 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2836 2852 49.128585 212.130703 130.629644 2.116041743 -0.046332 29 63 SH17504 17504 YJL136C_10_156971_156248_INTRON_25_484 exon/intron 29.918849 207.251194 29.918849 178.332345 104.125597 2.017557504 -0.146745 29 64 SH1153 1153 His1 5' flank - tRNA5 5 29.916412 145.130953 87.5236825 1.942125582 0.033427 29 65 SH4666 4666 snR3 3' 29.917847 157.143668 93.5307575 1.970954452 -0.030846 29 66 SH13191 13191 MT COX1 Exon4 30.924946 219.778604 30.924946 189.853658 110.389302 2.042926987 -0.163555 29 67 SH8915 8915 LSR1 / U2 RNA 3' 30.918887 179.759972 105.3394295 2.022590962 -0.093384 29 68 SH9432 9432 RUF2 RUF2 1 17 37.959864 154.583101 96.2714825 1.98349766 0.42879 29 69 SH4114 4114 SRP RNA SRP RNA 461 477 31.889581 152.715421 92.302501 1.965213469 0.124765 29 70 SH17574 17574 YJL191W_10_73786_74610_INTRON_11_418 5' exon 30.856179 218.965669 30.856179 189.10949 109.9828345 2.041324908 -0.159594 29 71 SH16883 16883 YGL189C_7_148970_148233_INTRON_1_368 intron 29.823236 184.759363 29.823236 155.936127 92.8796815 1.967920717 -0.03117 29 72 SH16874 16874 YGL187C_7_150529_149708_INTRON_1_342 intron 29.798742 205.043457 29.798742 176.244715 103.0217285 2.012928832 -0.142301 29 73 SH11287 11287 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3321 3339 70.085279 237.623623 153.854451 2.187110065 -0.00831 29 74 SH6737 6737 snR49 3' 29.784726 149.692428 89.738577 1.952979179 -0.000748 29 75 SH10117 10117 RUF6 RUF6 431 450 33.825772 204.502296 119.164034 2.076145197 -0.204916 29 76 SH12272 12272 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.872306 204.085002 31.872306 173.212696 102.542501 2.010903906 0.001086 29 77 SH1975 1975 Lys2 3' flank 27.928304 128.370116 78.14921 1.892924592 -0.013087 29 78 SH2742 2742 Pro5 tRNA 91 103 74.843339 201.370919 138.107129 2.140216097 0.384345 29 79 SH11252 11252 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3146 3163 3436.320517 2734.949371 3085.634944 3.489344544 0.549649 29 80 SH17279 17279 YHR141C_8_382752_381991_INTRON_5_445 intron 32.397887 214.394209 32.397887 182.996322 107.6971045 2.032204027 -0.045737 29 81 SH12743 12743 MT COX1 COX1ai1 32.558425 224.35564 32.558425 192.797215 112.67782 2.051838436 -0.127855 29 82 SH16320 16320 YDR471W_4_1401759_1402553_INTRON_32_415 intron 30.632013 174.653977 30.632013 145.021964 87.8269885 1.943627991 0.083142 29 83 SH7053 7053 snR62 snR62 56 75 34.864388 201.020451 117.9424195 2.071670033 -0.146119 29 84 SH2812 2812 Pro6 3' flank 30.761803 143.725945 87.243874 1.940734942 0.099188 29 85 SH9953 9953 RUF5-1 RUF5-1 571 587 34.886793 232.981488 133.9341405 2.126891295 -0.474548 29 86 SH2651 2651 Pro4 5' flank 32.73051 175.522505 104.1265075 2.017561302 0.036864 29 87 SH21687 21687 copy of SH10242 30.53183 147.340032 88.935931 1.949077256 0.063497 29 88 SH11773 11773 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5751 5769 2728.467759 1079.782973 1904.125366 3.279695539 1.702875 29 89 SH11650 11650 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5136 5153 36.235271 157.714318 96.9747945 1.986658868 0.336155 29 90 SH7806 7806 snoRNA cluster1 snR75/intergenic 29.901407 145.278047 29.901407 116.37664 73.1390235 1.864149158 0.208598 29 91 SH9682 9682 RUF4 RUF4 186 204 31.648152 176.232948 103.94055 2.016785011 -0.029671 29 92 SH17473 17473 YJL001W_10_434855_435618_INTRON_66_181 exon/intron 31.376198 202.040294 31.376198 171.664096 101.520147 2.006552238 -0.019117 29 93 SH11167 11167 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2721 2739 35.039183 153.670151 94.354667 1.974763386 0.299799 29 94 SH15397 15397 YBL050W_2_125087_126081_INTRON_31_146 exon/intron 36.697723 221.973437 36.697723 186.275714 111.4867185 2.047223133 0.056049 29 95 SH17672 17672 YKL006C-A_11_430270_429836_INTRON_37_177 intron/exon 30.599347 215.481189 30.599347 185.881842 108.2405945 2.034390169 -0.146829 29 96 SH17483 17483 YJL024C_10_396288_395627_INTRON_23_99 5' exon 30.362903 191.779536 30.362903 162.416633 96.389768 1.984030935 -0.026937 29 97 SH13749 13749 MT COB Exon1 30.139171 193.640905 30.139171 164.501734 97.3204525 1.98820412 -0.05262 29 98 SH236 236 Arg3 36-48 36 48 52.698925 189.608565 121.153745 2.083336843 0.248628 29 99 SH13374 13374 MT COX1 intronic 31.612437 193.632978 31.612437 163.020541 97.316489 1.988186432 0.047396 29 100 SH12975 12975 MT COX1 COX1ai2 29.55074 177.918617 29.55074 149.367877 89.4593085 1.951625537 -0.015357 29 101 SH9982 9982 RUF5-1 RUF5-1 716 736 44.309274 208.311484 126.310379 2.101439038 -0.07322 29 102 SH2363 2363 Phe3 3' flank 108.005183 259.918086 183.9616345 2.26472726 0.21443 29 103 SH15222 15222 MT COX3 cox3 30.944625 177.000753 30.944625 147.056128 89.0003765 1.949391844 0.09293 29 104 SH12918 12918 MT COX1 COX1ai2 36.366286 237.040249 36.366286 201.673963 119.0201245 2.0756204 -0.123349 30 2 SH546 546 Cys1 tRNA 31 47 34.095456 154.164928 94.130192 1.973728945 0.245494 30 3 SH12188 12188 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7826 7844 29.749336 175.759906 102.754621 2.011801362 -0.142605 30 4 SH14741 14741 MT ORF11; tRNA Leu; tRNA Gln 5' 27.57962 178.478828 27.57962 151.899208 89.739414 1.952983229 -0.173383 30 5 SH13437 13437 MT COX1 intronic 29.711332 167.735753 29.711332 139.024421 84.3678765 1.926177118 0.05244 30 6 SH7390 7390 snR68 3' 77.205834 256.856861 167.0313475 2.222797985 -0.079624 30 7 SH10885 10885 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1311 1324 35745.43908 31607.09341 33676.26625 4.527323934 -0.302564 30 8 SH7204 7204 snR64 snR64 86 98 31.798119 146.881032 89.3395755 1.951043885 0.15036 30 9 SH11202 11202 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2896 2913 44.654352 210.078291 127.3663215 2.105054606 -0.087293 30 10 SH19204 19204 YPL081W_16_404945_406039_INTRON_8_508 intron 42.48251 216.965871 42.48251 175.483361 108.9829355 2.037358502 0.289594 30 11 SH14619 14619 MT 21S rRNA Sce1 endonuc 29.607463 181.373934 29.607463 152.766471 91.186967 1.959932771 -0.029603 30 12 SH16067 16067 YDR005C_4_458099_456832_INTRON_7_86 intron 31.712695 213.269424 31.712695 182.556729 107.134712 2.029930206 -0.067286 30 13 SH854 854 Glu2 tRNA 36 48 1047.686344 1280.46746 1164.076902 3.065981672 0.186262 30 14 SH14445 14445 MT 21S rRNA 21S rRNA3 35.862601 200.815286 35.862601 165.952685 100.907643 2.003924062 0.240946 30 15 SH12229 12229 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 40.028882 194.297702 40.028882 155.26882 97.648851 1.989667137 0.484898 30 16 SH9441 9441 RUF2 RUF2 46 63 295.706591 417.226603 356.466597 2.55201884 0.449264 30 17 SH17138 17138 YHR010W_8_126513_127484_INTRON_32_592 intron 31.351312 200.606001 31.351312 170.254689 100.8030005 2.00347346 -0.012224 30 18 SH19761 19761 Negative Control 122.069887 280.052516 201.0612015 2.303328273 0.193666 30 19 SH18153 18153 YLR426W_12_987057_988108_INTRON_81_151 5' exon 41.765343 222.967978 41.765343 182.202635 111.983989 2.049155934 0.195257 30 20 SH8586 8586 snR19 / U1 RNA U1 426 441 185.397723 350.734447 268.066085 2.428241872 0.219608 30 21 SH6810 6810 snR52 5' 33.371642 159.31389 96.342766 1.983819111 0.172002 30 22 SH6833 6833 snR52 snR52 71 87 63.153933 183.597748 123.3758405 2.091230124 0.444478 30 23 SH4320 4320 telomerase RNA telomerase 636 652 31.494352 147.432775 89.4635635 1.951646193 0.127402 30 24 SH17150 17150 YHR012W_8_129473_130440_INTRON_49_167 intron 80.972147 261.86053 80.972147 181.888383 131.430265 2.118695384 0.659157 30 25 SH8046 8046 snoRNA cluster 2 intergenic 29.713941 211.850859 29.713941 183.136918 106.4254295 2.027045412 -0.186603 30 26 SH6774 6774 snR50 snR50 46 66 42.857102 221.64465 132.250876 2.121398557 -0.233983 30 27 SH8633 8633 snR19 / U1 RNA 661-668 + 3' 661 30.05808 162.103931 96.0810055 1.982637539 -0.046316 30 28 SH15394 15394 YBL040C_2_142830_142074_INTRON_23_119 3' exon 30.196652 203.409836 30.196652 174.213184 102.204918 2.009471794 -0.105725 30 29 SH2815 2815 Pro6 3' flank 30.30321 147.979678 89.141444 1.950079665 0.04439 30 30 SH8977 8977 snR17a / U3a U3a 171 188 32.570208 170.67152 101.620864 2.006982883 0.056594 30 31 SH14383 14383 MT ORF9 and ORF10 (hypothetical) 3' 28.229382 150.947765 28.229382 123.718383 75.9738825 1.880664321 0.039555 30 32 SH4236 4236 telomerase RNA telomerase 216 234 41.451167 157.157777 99.304472 1.996968807 0.506318 30 33 SH10347 10347 RUF7 RUF7 346 362 32.651807 161.780472 97.2161395 1.987738371 0.115628 30 34 SH17767 17767 YKL180W_11_109271_110131_INTRON_310_615 5' exon 32.64038 193.464514 32.64038 161.824134 97.232257 1.987810367 0.114699 30 35 SH15718 15718 YBR255C-A_2_727032_726576_INTRON_64_157 5' exon 34.806222 188.368861 34.806222 154.562639 94.6844305 1.976278571 0.281445 30 36 SH17478 17478 YJL001W_10_434855_435618_INTRON_66_181 intron 32.554131 210.137864 32.554131 178.583733 105.568932 2.023536128 0.001214 30 37 SH14277 14277 MT VAR1 includes 5’ processing site VAR1 32.471564 191.304272 32.471564 159.832708 96.152136 1.982958936 0.117587 30 38 SH1382 1382 Leu1 5' flank - tRNA2 2 30.18232 189.461249 109.8217845 2.040688496 -0.19186 30 39 SH12948 12948 MT COX1 COX1ai2 30.056528 189.017519 30.056528 159.960991 95.0087595 1.977763648 -0.035643 30 40 SH18728 18728 YNL147W_14_350937_351380_INTRON_19_138 intron 29.915135 188.196104 29.915135 159.280969 94.598052 1.975882193 -0.041977 30 41 SH6851 6851 snR52 3' 29.767114 148.785136 89.276125 1.950735332 0.002949 30 42 SH16429 16429 YER074W_5_306319_307192_INTRON_4_469 intron 68.268629 319.151487 68.268629 251.882858 160.0757435 2.204325528 -0.149138 30 43 SH1532 1532 Leu3 3' flank 31.612419 169.874258 100.7433385 2.003216339 0.005554 30 44 SH8218 8218 snoRNA cluster 3; snR51 31.480812 230.904859 31.480812 200.424047 115.9524295 2.064279853 -0.233643 30 45 SH19059 19059 YOR234C_15_779404_778554_INTRON_20_546 intron/exon 29.255589 166.245143 29.255589 137.989554 83.6225715 1.922323519 0.025707 30 46 SH3839 3839 RNaseP RNaseP 161 178 82.092287 283.16056 182.6264235 2.261563614 -0.213712 30 47 SH11327 11327 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3521 3536 208.115323 428.108688 318.1120055 2.50258006 -0.00322 30 48 SH11343 11343 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3601 3614 35639.19458 30049.35226 32844.27342 4.516459659 -0.226208 30 49 SH4099 4099 SRP RNA SRP RNA 386 400 68.934923 195.097754 132.0163385 2.120627683 0.382807 30 50 SH20882 20882 YLR211C spliced 31.03691 182.179069 106.6079895 2.027789753 -0.099843 30 51 SH5374 5374 snR31 5' 30.985606 182.506469 106.7460375 2.028351763 -0.10476 30 52 SH2152 2152 Met1 3' flank 35.089778 194.390808 114.740293 2.059715955 -0.068522 30 53 SH16489 16489 YER102W_5_362729_363698_INTRON_1_360 3' exon 30.839831 179.438704 30.839831 149.598873 90.219352 1.955299703 0.072002 30 54 SH9865 9865 RUF5-1 RUF5-1 131 152 30.738947 160.545156 95.6420515 1.980648883 0.007996 30 55 SH19754 19754 Negative Control 32.685894 193.136586 112.91124 2.052737177 -0.126142 30 56 SH12138 12138 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7576 7594 31.525476 182.441287 106.9833815 2.029316321 -0.073312 30 57 SH16347 16347 YDR500C_4_1450856_1450201_INTRON_8_396 intron 32.421534 230.30535 32.421534 198.883816 115.652675 2.063155682 -0.185352 30 58 SH2154 2154 Met2 5' flank 38.42472 202.462115 120.4434175 2.08078307 -0.095716 30 59 SH19939 19939 YBL027W spliced 75.095929 259.512655 167.304292 2.223507082 -0.124742 30 60 SH18650 18650 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.092792 179.655163 30.092792 150.562371 90.3275815 1.955820382 0.015912 30 61 SH9355 9355 RUF1 RUF1 351 373 29.02964 154.833115 91.9313775 1.963463768 -0.081391 30 62 SH12423 12423 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 48.240303 224.894685 48.240303 177.654382 112.9473425 2.052876017 0.339524 30 63 SH11284 11284 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3306 3322 34.033521 157.288346 95.6609335 1.980734615 0.221716 30 64 SH19390 19390 YPR043W_16_654161_654842_INTRON_3_405 intron 32.004469 187.495067 32.004469 156.490598 94.2475335 1.974269993 0.111971 30 65 SH14394 14394 MT 21S rRNA 21S rRNA3 29.981117 204.07596 29.981117 175.094843 102.53798 2.010884758 -0.124245 30 66 SH16158 16158 YDR129C_4_715372_713333_INTRON_22_132 intron 31.993982 221.808618 31.993982 190.814636 111.404309 2.046901989 -0.131363 30 67 SH7360 7360 snR68 snR68 21 38 31.981105 147.949778 89.9654415 1.954075716 0.156395 30 68 SH10880 10880 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1286 1301 363.707165 454.481413 409.094289 2.611823417 0.552943 30 69 SH17861 17861 YLL050C_12_40413_39803_INTRON_15_193 5' exon 35.962364 244.440391 35.962364 209.478027 122.7201955 2.088916038 -0.213938 30 70 SH20259 20259 YDR397C spliced 37.9374 152.269116 95.103258 1.978195395 0.453532 30 71 SH15872 15872 YDL079C_4_314747_312950_INTRON_413_704 3' exon 33.866352 212.508949 33.866352 179.642597 106.7544745 2.028386087 0.038578 30 72 SH14295 14295 MT VAR1 includes 5’ processing site VAR1 29.813179 179.575268 29.813179 150.762089 90.287634 1.955628272 -0.004535 30 73 SH12926 12926 MT COX1 COX1ai2 31.797701 216.473263 31.797701 185.675562 108.7366315 2.036375875 -0.092665 30 74 SH7669 7669 snoRNA cluster1 snR78 29.786192 172.05343 29.786192 143.267238 86.526715 1.937150216 0.034312 30 75 SH9568 9568 RUF3 RUF3 226 243 29.804704 145.349478 87.577091 1.942390515 0.024376 30 76 SH13293 13293 MT COX1 COX1-ai5a 31.863232 224.241057 31.863232 193.377825 112.6205285 2.051617561 -0.158785 30 77 SH19646 19646 SIR1 2.2 31.948301 158.98682 95.4675605 1.979855825 0.092608 30 78 SH21602 21602 copy of SH6673 32.066583 185.220776 108.6436795 2.036004466 -0.078439 30 79 SH1265 1265 Ile2 tRNA 21 37 38.319366 171.15455 104.736958 2.020099956 0.26824 30 80 SH4917 4917 snR9 5' - 7 7 34.416259 195.97511 115.1956845 2.06143621 -0.099912 30 81 SH15751 15751 YCR031C_3_178212_177492_INTRON_8_314 intron 36.639856 191.516514 36.639856 155.876658 96.258257 1.983437993 0.36882 30 82 SH19302 19302 YPL198W_16_173151_174701_INTRON_12_420 intron 32.665282 200.151257 32.665282 168.485975 100.5756285 2.002492755 0.075137 30 83 SH3380 3380 Thr4 5' flank - tRNA5 5 30.69438 169.629173 100.1617765 2.000702019 -0.048071 30 84 SH3646 3646 Val2 5' flank 30.736335 149.787649 90.261992 1.955504914 0.064005 30 85 SH705 705 Gln3 tRNA 56 68 102.497976 283.439932 192.968954 2.285487443 -0.002161 30 86 SH14031 14031 MT COB exon4/cytbi4 32.716677 217.049373 32.716677 185.332696 109.0246865 2.037524847 -0.055415 30 87 SH6020 6020 snR37 snR37 16 38 32.585814 158.420781 95.5032975 1.980018367 0.133167 30 88 SH1409 1409 Leu1 3' flank 32.408752 144.123724 88.266238 1.945794617 0.205186 30 89 SH357 357 Arg5 3' flank 2982.433603 3288.943033 3135.688318 3.496332888 0.073445 30 90 SH9854 9854 RUF5-1 RUF5-1 76 93 29.944527 174.902863 102.423695 2.010400439 -0.125413 30 91 SH13497 13497 MT COX1 intronic 29.71339 193.907699 29.71339 165.194309 97.4538495 1.988798999 -0.08555 30 92 SH8439 8439 snoRNA cluster 5 snR128 12737.1046 23308.06511 12737.1046 10571.9605 11654.53255 4.066494859 0.10084 30 93 SH14877 14877 MT tRNA Ala 5' 31.219606 175.086865 31.219606 144.867259 88.0434325 1.944696966 0.123439 30 94 SH20482 20482 YGL226C-A spliced 33.9161 202.533349 118.2247245 2.072708311 -0.181959 30 95 SH20487 20487 YGL232W spliced 42.420434 215.900447 129.1604405 2.111129518 -0.181413 30 96 SH5017 5017 snR10 snR10 116 128 264.48373 510.202198 387.342964 2.588095672 -0.024724 30 97 SH15086 15086 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.394061 187.065723 28.394061 159.671662 94.0328615 1.973279652 -0.152261 30 98 SH7347 7347 snR68 5' 28.198937 113.525834 70.8623855 1.850415768 0.108772 30 99 SH4013 4013 SRP RNA 5' 29.902462 157.762972 93.832717 1.972354292 -0.035099 30 100 SH21205 21205 YOL127W spliced 86.531874 240.415162 163.473518 2.213447409 0.155314 30 101 SH8649 8649 snR19 / U1 RNA 3' 31.414716 142.721053 87.0678845 1.939857992 0.148459 30 102 SH3856 3856 RNaseP RNaseP 246 258 49.022073 223.030829 136.026451 2.133623367 -0.157954 30 103 SH16565 16565 YER133W_5_432491_433954_INTRON_178_702 intron 31.097053 178.902446 31.097053 148.805393 89.951223 1.954007073 0.093548 30 104 SH3066 3066 Ser3 tRNA 26 40 85.387041 253.72045 169.5537455 2.229307388 0.037456 31 2 SH2770 2770 Pro6 5' flank 31.662195 165.589313 98.625754 1.993990336 0.034451 31 3 SH5460 5460 snR32 5' 29.524194 157.54544 93.534817 1.970973301 -0.060402 31 4 SH16852 16852 YGL183C_7_157071_156547_INTRON_4_86 intron 31.665901 230.292403 31.665901 199.626502 115.6462015 2.063131373 -0.219892 31 5 SH14901 14901 MT tRNA Ile tRNA / 3' 27.388459 181.08872 27.388459 154.700261 91.04436 1.959253047 -0.202271 31 6 SH16135 16135 YDR064W_4_579453_580447_INTRON_22_560 3' exon 31.651758 212.152374 31.651758 181.500616 106.576187 2.027660178 -0.0598 31 7 SH12131 12131 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7541 7554 33.778299 174.276021 104.02716 2.017146742 0.086638 31 8 SH9539 9539 RUF3 RUF3 81 97 29.506657 151.753043 90.62985 1.957271261 -0.031289 31 9 SH12265 12265 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.631814 231.842413 31.631814 201.210599 116.4212065 2.066032096 -0.23452 31 10 SH16336 16336 YDR500C_4_1450856_1450201_INTRON_8_396 5' exon 29.494294 197.784888 29.494294 169.290594 99.392444 1.99735337 -0.120752 31 11 SH2532 2532 Pro1 3' flank 31.61018 150.313474 90.961827 1.958859175 0.119344 31 12 SH5060 5060 snR11 5' 31.587609 161.565704 96.5766565 1.984872166 0.055035 31 13 SH305 305 Arg4 3' flank 29.428924 179.641114 104.535019 2.019261803 -0.185039 31 14 SH14448 14448 MT 21S rRNA 21S rRNA3 29.385725 183.312071 29.385725 154.926346 92.1560355 1.964523783 -0.056577 31 15 SH17225 17225 YHR041C_8_189855_189122_INTRON_15_115 3' exon 33.570394 214.77373 33.570394 182.203336 107.886865 2.032968573 0.004179 31 16 SH16208 16208 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 38.800501 225.513768 38.800501 187.713267 113.256884 2.054064609 0.078726 31 17 SH16216 16216 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 31.337658 196.982685 31.337658 166.645027 98.9913425 1.995597214 0.008734 31 18 SH16411 16411 YER056C-A_5_270183_269421_INTRON_38_434 intron 30.246052 203.814799 30.246052 174.568747 102.4073995 2.010331338 -0.104741 31 19 SH2469 2469 Phe5 3' flank 31.290046 187.614154 109.4521 2.039224099 -0.129471 31 20 SH5479 5479 snR32 snR32 56 72 69.455141 242.095744 155.7754425 2.192498994 -0.053904 31 21 SH4286 4286 telomerase RNA telomerase 466 480 67.479631 220.494971 143.987301 2.158324191 0.112091 31 22 SH639 639 Gln2 5' flank 30.443874 184.398177 107.4210255 2.031089294 -0.148209 31 23 SH2243 2243 Phe1 91-92 + 3' flank 91 110 29.527411 133.96413 81.7457705 1.912465292 0.068257 31 24 SH15646 15646 YBR189W_2_604466_605466_INTRON_8_420 intron 57.649485 278.586977 57.649485 221.937492 139.7934885 2.145486943 -0.028022 31 25 SH15447 15447 YBL087C_2_60732_59815_INTRON_43_546 intron 29.876773 213.580354 29.876773 184.703581 107.290177 2.030559962 -0.185041 31 26 SH8796 8796 LSR1 / U2 RNA U2 621 639 30.052483 154.999576 92.5260295 1.966263926 -0.010398 31 27 SH5871 5871 snR35 3' 30.209531 170.869111 100.539321 2.002335948 -0.085236 31 28 SH4373 4373 telomerase RNA telomerase 901 913 36.910792 171.726711 104.3187515 2.018362381 0.217744 31 29 SH9728 9728 RUF4 RUF4 416 431 30.432371 161.248464 95.8404175 1.981548697 -0.016347 31 30 SH2259 2259 Phe1 3' flank 39.307492 199.702625 119.5050585 2.077386289 -0.050723 31 31 SH5822 5822 snR35 snR35 296 315 32.73235 171.813711 102.2730305 2.009761125 0.0591 31 32 SH16155 16155 YDR129C_4_715372_713333_INTRON_22_132 5' exon 34.952856 238.364966 34.952856 204.41211 119.682483 2.078030591 -0.180766 31 33 SH641 641 Gln2 5' flank - tRNA10 5' flank 10 30.539129 190.124206 110.3316675 2.042700182 -0.180997 31 34 SH13154 13154 MT COX1 intronic 28.320689 193.924999 28.320689 166.60431 97.4624995 1.988837545 -0.192061 31 35 SH9753 9753 RUF4 RUF4 541 553 345.522917 614.389898 479.9564075 2.681201794 -0.013391 31 36 SH6482 6482 snR46 5' 28.242276 120.121991 74.1821335 1.87029932 0.064942 31 37 SH18793 18793 YNL301C_14_64561_63569_INTRON_113_544 intron 30.361881 161.695782 30.361881 132.333901 81.347891 1.910346298 0.136492 31 38 SH4287 4287 telomerase RNA telomerase 471 483 121.167289 293.952214 207.5597515 2.317143142 0.095329 31 39 SH12751 12751 MT COX1 COX1ai1 30.137521 190.594744 30.137521 161.457223 95.797372 1.981353595 -0.0376 31 40 SH18900 18900 YOL120C_15_94401_93394_INTRON_113_559 intron 29.998278 183.984582 29.998278 154.986304 92.492291 1.966105537 -0.014075 31 41 SH964 964 Gly1 71-72 + 3' flank 71 29.851598 131.13996 80.495779 1.905773108 0.107858 31 42 SH1043 1043 Gly3 5' flank 31.849844 154.148021 92.9989325 1.968477963 0.114613 31 43 SH17481 17481 YJL001W_10_434855_435618_INTRON_66_181 3' exon 32.770124 198.827158 32.770124 167.057034 99.913579 1.999624516 0.089781 31 44 SH6997 6997 snR60 snR60 66 85 29.444903 166.749262 98.0970825 1.991656091 -0.111977 31 45 SH2760 2760 Pro5 3' flank 29.337604 166.602941 97.9702725 1.991094316 -0.118842 31 46 SH2447 2447 Phe5 tRNA 6 20 33.471627 157.166537 95.319082 1.979179851 0.191382 31 47 SH3637 3637 Val2 5' flank 33.390328 143.339107 88.3647175 1.946278893 0.271531 31 48 SH14266 14266 MT VAR1 includes 5’ processing site VAR1 36.484682 218.724773 36.484682 183.240091 109.8623865 2.040849029 0.087714 31 49 SH3665 3665 Val2 66-74 + 3' flank 66 29.077613 138.800208 83.9389105 1.923963328 0.00829 31 50 SH15968 15968 YDL130W_4_229906_230527_INTRON_115_415 intron/exon 31.133635 189.274915 31.133635 159.14128 95.1374575 1.978351541 0.041588 31 51 SH9134 9134 snR7 U5 RNA 5' 35.276453 152.576041 93.926247 1.97278697 0.319675 31 52 SH1013 1013 Gly2 tRNA 56 68 33.116624 171.53655 102.326587 2.009988489 0.082559 31 53 SH15789 15789 YDL029W_4_399336_400634_INTRON_23_145 intron 30.94786 190.18235 30.94786 160.23449 95.591175 1.9804178 0.023622 31 54 SH19891 19891 Positive Control 7 39.172595 203.413741 121.293168 2.083836339 -0.094863 31 55 SH21106 21106 YNL069C spliced 30.737675 143.816001 87.276838 1.940899004 0.097053 31 56 SH13243 13243 MT COX1 COX1-ai4 28.556032 166.556612 28.556032 139.00058 83.778306 1.923131575 -0.030955 31 57 SH17189 17189 YHR021C_8_148660_147862_INTRON_4_553 intron 32.553754 186.247231 32.553754 154.693477 93.6236155 1.971385408 0.155517 31 58 SH12342 12342 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.511682 220.523159 35.511682 186.011477 110.7615795 2.04438914 0.035897 31 59 SH4544 4544 U3b (snR17b) U3b 276 290 32.340281 187.921384 110.1308325 2.041908922 -0.092684 31 60 SH10678 10678 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 276 289 76.268897 248.870806 162.5698515 2.211040009 -0.027295 31 61 SH5517 5517 snR32 3' 28.14348 179.470948 103.807214 2.016227536 -0.267568 31 62 SH18160 18160 YLR426W_12_987057_988108_INTRON_81_151 3' exon 30.138812 213.230749 30.138812 184.091937 107.1153745 2.029851811 -0.165347 31 63 SH20490 20490 YGL232W spliced 30.115288 163.020521 96.5679045 1.984832807 -0.046938 31 64 SH4263 4263 telomerase RNA telomerase 351 368 32.12575 159.73901 95.93238 1.981965219 0.098167 31 65 SH16574 16574 YER179W_5_548416_549512_INTRON_133_224 5' exon 140.536782 424.259896 140.536782 284.723114 212.629948 2.327624433 0.305722 31 66 SH2599 2599 Pro3 5' flank 32.089271 162.508241 97.298756 1.988107288 0.078581 31 67 SH21054 21054 YMR143W spliced 32.061941 171.083556 101.5727485 2.006777204 0.024742 31 68 SH12341 12341 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.047649 205.29208 34.047649 172.244431 103.14604 2.013452559 0.115939 31 69 SH21601 21601 copy of SH6672 34.000385 196.29482 115.1476025 2.0612549 -0.112063 31 70 SH17971 17971 YLR185W_12_522665_523290_INTRON_8_366 intron/exon 31.931563 199.91115 31.931563 168.979587 100.455575 2.001974044 0.029696 31 71 SH8322 8322 snoRNA cluster4 intergenic 29.869889 203.641378 29.869889 174.771489 102.320689 2.009963456 -0.129315 31 72 SH21287 21287 YPL143W spliced 33.847455 192.850019 113.348737 2.054416685 -0.081805 31 73 SH14851 14851 MT tRNA Ser2; tRNA Arg2 5' 29.799518 171.151662 29.799518 142.352144 86.075831 1.934881224 0.040248 31 74 SH3941 3941 RNase MRP RNaseMRP 121 145 29.789704 148.794696 89.2922 1.950813523 0.004472 31 75 SH9246 9246 snR6 / U6 RNA 101-112 + 3' 101 27.799052 110.188219 68.9936355 1.83880903 0.10441 31 76 SH397 397 Asn1 66-74 + 3' flank 66 3' flank 35.887048 131.051726 83.469387 1.921527224 0.493782 31 77 SH16710 16710 YGL031C_7_438393_437938_INTRON_1_456 intron 31.944763 184.452967 31.944763 153.508204 92.7264835 1.96720379 0.124158 31 78 SH7932 7932 snoRNA cluster1 snR72 34.08485 202.31672 34.08485 169.23187 101.65836 2.007143099 0.147022 31 79 SH8827 8827 LSR1 / U2 RNA U2 776 793 30.167969 114.903598 72.5357835 1.860552306 0.237408 31 80 SH7348 7348 snR68 5' 34.397585 125.710071 80.053828 1.903382104 0.439346 31 81 SH11723 11723 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5501 5517 34.557458 165.251005 99.9042315 1.999583883 0.200101 31 82 SH799 799 Glu1 tRNA 11 27 3737.535002 2538.772664 3138.153833 3.496674229 0.776972 31 83 SH12420 12420 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.724721 180.155049 32.724721 148.430328 90.5775245 1.957020447 0.20147 31 84 SH18092 18092 YLR367W_12_855877_857316_INTRON_698_1180 intron 30.697302 175.29719 30.697302 145.599888 88.148595 1.945215394 0.084339 31 85 SH10635 10635 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 61 79 34.817863 219.718172 127.2680175 2.104719279 -0.341789 31 86 SH6432 6432 snR45 snR45 6 25 34.740101 170.826736 102.7834185 2.011923058 0.154005 31 87 SH20109 20109 YDL064W spliced 44.904606 247.390378 146.147492 2.164791367 -0.446097 31 88 SH9698 9698 RUF4 RUF4 266 285 34.430397 184.220433 109.325415 2.038721135 0.015903 31 89 SH5712 5712 snR34 snR34 481 496 36.254796 185.023362 110.639079 2.043908552 0.062149 31 90 SH10814 10814 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 956 976 226.904102 386.369175 306.6366385 2.486624045 0.274494 31 91 SH16928 16928 YGR001C_7_498029_497128_INTRON_36_97 intron 31.746458 211.915903 31.746458 181.169445 106.4579515 2.027178105 -0.053139 31 92 SH6334 6334 snR43 5' 241.484343 370.503258 305.9938005 2.485712628 0.418513 31 93 SH1125 1125 Gly4 3' flank 29.324496 144.857985 87.0912405 1.939974477 -0.007194 31 94 SH11534 11534 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4556 4573 1426.208831 1138.799326 1282.504079 3.108058755 0.771904 31 95 SH13735 13735 MT COB Exon1 30.87837 184.52546 30.87837 154.64709 92.76273 1.967373521 0.047709 31 96 SH18565 18565 YNL012W_14_609682_611661_INTRON_106_189 5' exon 32.614049 218.337028 32.614049 186.722979 109.668514 2.040081959 -0.07179 31 97 SH6504 6504 snR46 snR46 11 27 29.515387 165.544569 97.529978 1.989138126 -0.101142 31 98 SH9181 9181 snR7 U5 RNA U5 176 192 34.115159 148.677395 91.396277 1.960928505 0.283398 31 99 SH1675 1675 Leu6 5' flank 28.197023 139.989385 84.093204 1.9247609 -0.063125 31 100 SH21220 21220 YOR182C spliced 38.453019 179.810512 109.1317655 2.037951181 0.166037 31 101 SH7594 7594 snR189 snR189 41 57 33.527579 146.769518 90.1485485 1.954958738 0.260885 31 102 SH1874 1874 Leu9 3' flank 25.853322 104.128419 64.9908705 1.812852354 0.003261 31 103 SH17578 17578 YJL191W_10_73786_74610_INTRON_11_418 intron 29.462939 161.756659 29.462939 133.29372 81.3783295 1.910508771 0.067563 31 104 SH11784 11784 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5806 5819 39680.17567 27422.9889 33551.58228 4.525713006 0.058389 32 2 SH756 756 Gln4 tRNA 51 63 44.195237 199.441617 121.818427 2.085712987 0.023042 32 3 SH502 502 Asp2 71-72 + 3' flank 71 88 29.278934 142.712826 85.99588 1.934477645 0.001158 32 4 SH17003 17003 YGR118W_7_726968_727725_INTRON_66_385 3' exon 33.554915 183.677295 33.554915 151.12238 92.3386475 1.965383509 0.235872 32 5 SH5631 5631 snR34 snR34 76 93 31.447372 146.928183 89.1877775 1.950305342 0.127081 32 6 SH7612 7612 snR189 snR189 131 150 29.339699 139.650741 84.49522 1.926832141 0.022427 32 7 SH7647 7647 snoRNA cluster1 5' 29.351013 157.623618 29.351013 129.272605 79.311809 1.899337856 0.083418 32 8 SH7280 7280 snR65 3' 29.359893 147.750401 88.555147 1.947213808 -0.02006 32 9 SH19136 19136 YPL075W_16_412249_415357_INTRON_9_759 intron 27.247243 192.949272 27.247243 166.702029 96.974636 1.986658158 -0.272726 32 10 SH15566 15566 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.368546 193.852072 29.368546 165.483526 97.426036 1.988675033 -0.111193 32 11 SH12443 12443 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 95.566528 305.183534 95.566528 210.617006 153.091767 2.184951836 0.506539 32 12 SH1695 1695 Leu6 tRNA 41 55 54.866023 184.095135 119.480579 2.077297319 0.341155 32 13 SH21338 21338 YPR063C spliced 29.338392 191.585496 110.461944 2.043212682 -0.256202 32 14 SH21307 21307 YPL218W spliced 33.548804 155.695298 94.622051 1.975992357 0.205243 32 15 SH12679 12679 MT tRNA Trp tRNA 29.288405 177.323101 29.288405 149.034696 89.1615505 1.950177612 -0.032054 32 16 SH3189 3189 Ser5 tRNA 66 81 35388.82677 31869.42342 33629.1251 4.526715569 -0.328699 32 17 SH17128 17128 YHR010W_8_126513_127484_INTRON_32_592 intron 63.173106 287.759438 63.173106 225.586332 144.379719 2.159506192 0.011066 32 18 SH8576 8576 snR19 / U1 RNA U1 376 393 31.366326 165.164066 98.265196 1.992399725 0.019513 32 19 SH7091 7091 snR63 5' 37.747795 155.071443 96.409619 1.984120367 0.416757 32 20 SH1450 1450 Leu2 tRNA 21 35 35.703748 183.486071 109.5949095 2.039790382 0.066147 32 21 SH459 459 Asp1 3' flank 29.440088 132.89658 81.168334 1.909386632 0.068254 32 22 SH16765 16765 YGL087C_7_346902_346404_INTRON_12_96 3' exon 95.15652 342.704251 95.15652 248.547731 171.8521255 2.235154908 0.178949 32 23 SH10823 10823 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1001 1021 29.721182 133.224368 81.472775 1.911012509 0.086348 32 24 SH16223 16223 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.891294 159.812886 29.891294 130.921592 80.406443 1.90529085 0.111956 32 25 SH6404 6404 snR43 3' 32.234858 180.455376 106.345117 2.026717553 -0.028186 32 26 SH21909 21909 copy of SH19562 30.229372 138.300381 84.2648765 1.925646589 0.092914 32 27 SH18719 18719 YNL130C_14_381156_379555_INTRON_30_470 intron 30.372218 187.183512 30.372218 157.811294 94.091756 1.973551574 -0.002999 32 28 SH3116 3116 Ser4 5' flank - tRNA3 3 32.685785 194.471092 113.5784385 2.055295894 -0.137766 32 29 SH8441 8441 snoRNA cluster 5 snR128 100.523423 363.411188 100.523423 263.887765 182.205594 2.260561706 0.115576 32 30 SH14110 14110 MT COB intronic 30.615141 196.09543 30.615141 166.480289 98.547715 1.993646559 -0.033866 32 31 SH8121 8121 snoRNA cluster 3; snR41 30.638708 193.956019 30.638708 164.317311 97.4780095 1.988906652 -0.01914 32 32 SH8428 8428 snoRNA cluster 5 intergenic 127.066662 421.685054 127.066662 295.618392 211.342527 2.324986896 0.133037 32 33 SH13435 13435 MT COX1 intronic 52.809498 263.247738 52.809498 211.43824 132.123869 2.120981283 0.010527 32 34 SH19778 19778 Negative Control 32.824323 199.642913 116.233618 2.065331756 -0.17699 32 35 SH3346 3346 Thr3 3' flank 30.580814 130.708733 80.6447735 1.906576226 0.161254 32 36 SH10919 10919 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1481 1501 156.069405 368.99501 262.5322075 2.41918259 -0.059271 32 37 SH16558 16558 YER133W_5_432491_433954_INTRON_178_702 intron 34.857108 250.915581 34.857108 217.058473 125.9577905 2.100225034 -0.313443 32 38 SH10062 10062 RUF6 RUF6 156 177 31.459272 186.978362 109.218817 2.038297468 -0.117282 32 39 SH2186 2186 Met2 tRNA 61 73 32.431016 172.08126 102.256138 2.009689386 0.04023 32 40 SH10836 10836 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1066 1083 45.358991 173.354544 109.3567675 2.038845664 0.358554 32 41 SH9567 9567 RUF3 RUF3 221 238 29.977005 141.714968 85.8459865 1.933719996 0.05625 32 42 SH10428 10428 RUF8 RUF8 66 85 29.837098 162.98968 96.413389 1.984137349 -0.066044 32 43 SH3394 3394 Thr4 tRNA 56 70 44.735605 205.751731 125.243668 2.097755778 -0.039317 32 44 SH10306 10306 RUF7 RUF7 141 155 572.254113 856.13244 714.1932765 2.853815757 0.067352 32 45 SH8163 8163 snoRNA cluster 3; snR70 33.729337 197.929471 33.729337 165.200134 99.4647355 1.997669132 0.155071 32 46 SH1904 1904 Lys1 5' flank 35.749298 177.949493 106.8493955 2.028772069 0.119376 32 47 SH9824 9824 RUF5-1 5' 29.310155 186.019415 107.664785 2.032073677 -0.228048 32 48 SH21082 21082 YMR292W spliced 31.364257 166.08147 98.7228635 1.994417744 0.013762 32 49 SH7228 7228 snR65 5' 69.448906 238.778686 154.113796 2.187841518 -0.025948 32 50 SH21286 21286 YPL143W spliced 31.271514 193.129375 112.2004445 2.049994577 -0.179071 32 51 SH11369 11369 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3731 3746 15120.17926 18940.47092 17030.32509 4.231222938 -0.604645 32 52 SH3781 3781 Val4 3' flank 31.165196 146.028358 88.596777 1.947417923 0.113352 32 53 SH7326 7326 snR66 3' 35.280311 177.801829 106.54107 2.027517054 0.104957 32 54 SH5358 5358 snR30 3' 1390.787491 1892.829452 1641.808472 3.215322492 -0.064438 32 55 SH3648 3648 Val2 5' flank - tRNA1 1 28.810964 150.545747 89.6783555 1.952687636 -0.074416 32 56 SH17551 17551 YJL189W_10_75932_76473_INTRON_7_392 5' exon 57.824487 267.043712 57.824487 210.219225 134.021856 2.127175628 0.089634 32 57 SH12951 12951 MT COX1 COX1ai2 30.671054 194.636281 30.671054 164.965227 97.8181405 1.990419403 -0.021166 32 58 SH16578 16578 YER179W_5_548416_549512_INTRON_133_224 intron 30.572883 160.972344 30.572883 131.399461 80.986172 1.908410872 0.156601 32 59 SH13742 13742 MT COB Exon1 30.489489 178.106873 30.489489 148.617384 89.5534365 1.952082256 0.053624 32 60 SH11353 11353 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3651 3667 8828.905464 8335.881165 8582.393315 3.933608414 0.004803 32 61 SH9929 9929 RUF5-1 RUF5-1 451 468 32.415387 174.16654 103.2909635 2.014062329 0.027091 32 62 SH15424 15424 YBL072C_2_89435_88518_INTRON_1_308 exon/intron 32.371467 221.369244 32.371467 189.997777 111.184622 2.046044724 -0.110072 32 63 SH6134 6134 snR39B snR39B 11 26 40.508544 183.173571 111.8410575 2.048601265 0.162522 32 64 SH19245 19245 YPL090C_16_378390_377286_INTRON_7_400 3' exon 34.340565 221.202292 34.340565 187.861727 111.101146 2.045718539 -0.020256 32 65 SH16006 16006 YDL137W_4_216158_217074_INTRON_1_332 intron 34.30221 221.135843 34.30221 187.833633 111.0679215 2.045588645 -0.021342 32 66 SH11104 11104 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2406 2423 57.725284 192.73037 125.227827 2.097700845 0.275331 32 67 SH15790 15790 YDL029W_4_399336_400634_INTRON_23_145 intron/exon 32.173294 187.824764 32.173294 156.65147 94.412382 1.975028955 0.120762 32 68 SH6814 6814 snR52 5' 34.142238 173.865438 104.003838 2.017049366 0.103456 32 69 SH4733 4733 snR4 3' 32.049269 171.304027 101.676648 2.00722122 0.022694 32 70 SH7229 7229 snR65 5' 30.971709 170.164287 100.567998 2.002459805 -0.034457 32 71 SH15586 15586 YBR084C-A_2_415219_414144_INTRON_3_508 intron 31.914986 183.53246 31.914986 152.617474 92.26623 1.965042776 0.126937 32 72 SH5109 5109 snR11 snR11 146 158 33.870378 172.788268 103.329323 2.014223584 0.104366 32 73 SH8466 8466 snoRNA cluster 5 3' 31.820173 201.256631 31.820173 170.436458 101.1283155 2.004872773 0.014442 32 74 SH11034 11034 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2056 2069 4851.840759 2877.183495 3864.512127 3.587094674 0.919661 32 75 SH7235 7235 snR65 5' 35.840743 169.171527 102.506135 2.010749859 0.207799 32 76 SH21570 21570 copy of SH5385 35.89591 198.509069 117.2024895 2.068936837 -0.09811 32 77 SH1329 1329 Ile3 tRNA-exon/intron 26 42 31.952328 156.865843 94.4090855 1.975013791 0.106489 32 78 SH1868 1868 Leu9 tRNA 81 96 34.090195 170.2221 102.1561475 2.009264507 0.137365 32 79 SH17370 17370 YIL052C_9_257061_256224_INTRON_38_509 intron 32.20028 200.1207 32.20028 168.92042 100.56035 2.002426776 0.045718 32 80 SH1422 1422 Leu1 3' flank 32.345363 193.423859 112.884611 2.052634741 -0.141196 32 81 SH17334 17334 YIL018W_9_316766_317930_INTRON_5_404 intron 32.484832 193.119929 32.484832 161.635097 97.0599645 1.987040128 0.106957 32 82 SH15537 15537 YBR078W_2_393082_394818_INTRON_59_388 intron 32.601958 200.028037 32.601958 168.426079 100.5140185 2.002226636 0.071871 32 83 SH17890 17890 YLR048W_12_242233_243350_INTRON_91_449 intron 30.61874 182.99701 30.61874 153.37827 91.998505 1.96378077 0.03686 32 84 SH2285 2285 Phe2 tRNA 21 33 36.846016 186.888625 111.8673205 2.048703236 0.051748 32 85 SH2102 2102 Lys4 3' flank 32.689779 160.786946 96.7383625 1.985598732 0.124059 32 86 SH12590 12590 MT_15S MT_15S 32.613852 207.883419 32.613852 176.269567 104.4417095 2.018873972 0.02542 32 87 SH15439 15439 YBL072C_2_89435_88518_INTRON_1_308 intron/exon 30.44017 161.954084 30.44017 132.513914 81.477042 1.911035254 0.140857 32 88 SH221 221 Arg3 5' flank 34.372308 209.102991 121.7376495 2.085424912 -0.242029 32 89 SH5207 5207 snR13 3' 32.14411 154.152205 93.1481575 1.969174269 0.133677 32 90 SH3280 3280 Thr2 tRNA 1 13 35.979555 171.184403 103.581979 2.015284204 0.19247 32 91 SH14434 14434 MT 21S rRNA 21S rRNA3 39.763621 232.089218 39.763621 193.325597 116.544609 2.066492189 0.030365 32 92 SH18514 18514 YMR201C_13_667043_665844_INTRON_28_111 intron 33.527939 186.115025 33.527939 153.587086 93.5575125 1.971078666 0.217932 32 93 SH7749 7749 snoRNA cluster1 intergenic/snR76 39.266733 244.334078 39.266733 206.067345 122.667039 2.088727882 -0.123042 32 94 SH2729 2729 Pro5 tRNA-exon/intron 26 38 31.154063 157.434408 94.2942355 1.974485144 0.051685 32 95 SH8631 8631 snR19 / U1 RNA 651-668 + 3' 651 29.018621 152.593473 90.806047 1.95811477 -0.070376 32 96 SH6733 6733 snR49 3' 32.745214 193.655176 113.200195 2.053847175 -0.128495 32 97 SH18335 18335 YML124C_13_23684_22049_INTRON_26_323 5' exon 221.306257 606.817842 221.306257 386.511585 303.908921 2.482743449 0.245571 32 98 SH8884 8884 LSR1 / U2 RNA U2 1061 1073 37.204372 190.031386 113.617879 2.055446678 0.022276 32 99 SH21371 21371 Leu1_5 spliced 159.240907 353.451002 256.3459545 2.408826468 0.040248 32 100 SH12554 12554 MT_15S 5' 28.235409 171.89622 28.235409 144.660811 86.44811 1.936755503 -0.08584 32 101 SH19003 19003 YOR122C_15_552886_552297_INTRON_14_222 intron 31.895075 175.696746 31.895075 144.801671 88.348373 1.946198556 0.168228 32 102 SH8849 8849 LSR1 / U2 RNA U2 886 901 314.043267 511.926319 412.984793 2.61593406 0.175941 32 103 SH14345 14345 MT VAR1 includes 5’ processing site 3' 33.517913 216.909816 33.517913 184.391903 108.954908 2.037246798 -0.017844 32 104 SH18615 18615 YNL069C_14_494998_493953_INTRON_29_477 intron 31.510876 181.748821 31.510876 151.237945 91.3744105 1.960824588 0.107847 33 2 SH15236 15236 MT COX3 3' 28.973176 192.961862 28.973176 164.988686 96.980931 1.986686349 -0.136896 33 3 SH13699 13699 MT tRNAGlu (and 5' processing site for COB) 5' 29.038485 175.640208 29.038485 147.601723 88.320104 1.946059572 -0.042459 33 4 SH10122 10122 RUF6 RUF6 456 472 31.200774 173.185166 102.19297 2.009421021 -0.038561 33 5 SH20531 20531 YGR148C spliced 31.245959 175.717093 103.481526 2.014862824 -0.050601 33 6 SH3472 3472 Tyr1 5' flank 43.971435 148.695413 96.333424 1.983776997 0.670427 33 7 SH20753 20753 YJR021C spliced 41.887534 198.476639 120.1820865 2.07983974 0.001503 33 8 SH19243 19243 YPL090C_16_378390_377286_INTRON_7_400 intron 29.228506 177.737609 29.228506 149.509103 89.3688045 1.951185948 -0.038877 33 9 SH13538 13538 MT COX1 intronic 29.246545 181.324417 29.246545 153.077872 91.1622085 1.959814838 -0.056707 33 10 SH17298 17298 YHR141C_8_382752_381991_INTRON_5_445 intron/exon 30.31452 172.754732 30.31452 143.440212 86.877366 1.938906645 0.070401 33 11 SH12023 12023 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7001 7018 30.32073 155.46515 92.89294 1.967982708 0.005614 33 12 SH19244 19244 YPL090C_16_378390_377286_INTRON_7_400 intron/exon 29.265493 168.264312 29.265493 139.998819 84.632156 1.927535405 0.015154 33 13 SH21399 21399 Pro8 spliced 106.747112 213.987114 160.367113 2.205115311 0.577944 33 14 SH18105 18105 YLR367W_12_855877_857316_INTRON_698_1180 intron 31.372178 193.726645 31.372178 163.354467 97.3633225 1.988395386 0.031055 33 15 SH10734 10734 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 556 574 31.373331 175.684427 103.528879 2.015061512 -0.042808 33 16 SH7064 7064 snR62 3' 33.499033 190.620345 112.059689 2.049449413 -0.074576 33 17 SH849 849 Glu2 tRNA 11 27 4601.727172 4075.874526 4338.800849 3.637369716 0.298693 33 18 SH15052 15052 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.226884 191.901606 27.226884 165.674722 96.450803 1.984305848 -0.269269 33 19 SH12365 12365 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.414155 169.393296 29.414155 140.979141 85.196648 1.930422508 0.020387 33 20 SH9701 9701 RUF4 RUF4 281 301 28.44677 131.170535 79.8086525 1.902049978 0.006858 33 21 SH205 205 Arg2 3' flank 29.633757 158.401564 94.0176605 1.97320944 -0.057105 33 22 SH21794 21794 copy of SH14859 31.927087 148.52813 90.2276085 1.955339446 0.149726 33 23 SH7262 7262 snR65 86-100 + 3' 86 29.937346 167.245784 98.591565 1.99383976 -0.080378 33 24 SH12328 12328 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.102865 181.606798 30.102865 152.503933 91.303399 1.960486946 0.006227 33 25 SH14156 14156 MT COB intronic 30.264343 210.510494 30.264343 181.246151 105.755247 2.024301924 -0.141749 33 26 SH19677 19677 SIR1 2.4 30.411579 161.313425 95.862502 1.98164876 -0.018092 33 27 SH20387 20387 YFL034C-B spliced 32.739756 188.534648 110.637202 2.043901184 -0.083476 33 28 SH21762 21762 copy of SH13394 30.631693 175.492989 103.062341 2.013100003 -0.086421 33 29 SH1546 1546 Leu4 5' flank 30.697216 149.785993 90.2416045 1.955406808 0.061371 33 30 SH11268 11268 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3226 3243 98.87696 260.763366 179.820163 2.254838387 0.122683 33 31 SH2293 2293 Phe2 tRNA 61 73 215.437885 372.308999 293.873442 2.46816034 0.280793 33 32 SH16751 16751 YGL076C_7_365994_364333_INTRON_565_1032 intron 30.748941 215.111819 30.748941 185.362878 108.0559095 2.033648523 -0.134871 33 33 SH8569 8569 snR19 / U1 RNA U1 341 357 30.736764 144.593821 87.6652925 1.942827686 0.092622 33 34 SH14430 14430 MT 21S rRNA 21S rRNA3 30.715357 184.28529 30.715357 154.569933 92.642645 1.966810946 0.037128 33 35 SH2416 2416 Phe4 3' flank 46.217682 152.365349 99.2915155 1.996912139 0.656871 33 36 SH8245 8245 snoRNA cluster4 5' 28.426574 154.666336 28.426574 127.239762 77.833168 1.891164708 0.030612 33 37 SH9255 9255 snR6 / U6 RNA 3' 32.778239 210.838233 121.808236 2.085676654 -0.293624 33 38 SH14290 14290 MT VAR1 includes 5’ processing site VAR1 30.486115 202.728767 30.486115 173.242652 101.8643835 2.008022361 -0.082214 33 39 SH840 840 Glu2 5' flank 32.574486 166.052194 99.31334 1.997007588 0.084717 33 40 SH12008 12008 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6926 6946 30.262467 151.220642 90.7415545 1.957806215 0.024047 33 41 SH7869 7869 snoRNA cluster1 snR73 41.021818 206.321952 41.021818 166.300134 103.660976 2.015615294 0.381903 33 42 SH21675 21675 copy of SH9838 27.840453 124.247533 76.043993 1.881064913 0.007485 33 43 SH14094 14094 MT COB Cytbi4 27.722745 158.641578 27.722745 131.918833 79.820789 1.902116016 -0.05088 33 44 SH19896 19896 snR17A spliced 49.131839 199.800479 124.466159 2.095051288 0.086289 33 45 SH13079 13079 MT COX1 COX1ai3 30.721228 199.074557 30.721228 169.353329 100.0372785 2.000161868 -0.044783 33 46 SH18091 18091 YLR367W_12_855877_857316_INTRON_698_1180 exon/intron 31.69207 210.384576 31.69207 179.692506 105.692288 2.0240433 -0.04683 33 47 SH6704 6704 snR49 snR49 46 62 33.738986 182.903546 108.321266 2.034713727 0.003708 33 48 SH17155 17155 YHR012W_8_129473_130440_INTRON_49_167 intron/exon 31.543611 188.393022 31.543611 157.849411 94.696511 1.976333978 0.075341 33 49 SH14413 14413 MT 21S rRNA 21S rRNA3 45.301913 225.372832 45.301913 181.070919 113.186416 2.053794308 0.258276 33 50 SH15114 15114 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF3 exon3 27.211175 146.32237 27.211175 120.111195 73.661185 1.867238701 -0.011424 33 51 SH693 693 Gln3 5' flank - tRNA10 5' flank 10 33.510506 156.689432 95.099969 1.978180375 0.196641 33 52 SH12310 12310 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.228324 199.184224 29.228324 170.9559 100.092112 2.000399853 -0.147481 33 53 SH19213 19213 YPL081W_16_404945_406039_INTRON_8_508 intron 33.374646 198.059656 33.374646 165.68501 99.529828 1.997953254 0.132331 33 54 SH1111 1111 Gly4 tRNA 31 43 41.701934 205.604485 123.6532095 2.092205393 -0.081793 33 55 SH9161 9161 snR7 U5 RNA U5 76 93 26.905093 138.25336 82.5792265 1.916870811 -0.15132 33 56 SH5394 5394 snR31 snR31 36 52 30.993204 132.594406 81.793805 1.912720412 0.178303 33 57 SH10784 10784 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 806 822 788.601551 1249.630826 1019.116189 3.0082237 -0.139293 33 58 SH20708 20708 YJL024C spliced 30.816628 167.549409 99.1830185 1.996437321 -0.028107 33 59 SH17465 17465 YIL148W_9_68708_69528_INTRON_9_442 intron 30.744581 217.881923 30.744581 188.137342 109.4409615 2.0391799 -0.155237 33 60 SH3297 3297 Thr2 3' flank 28.618069 132.013474 80.3157715 1.904800835 0.013896 33 61 SH20712 20712 YJL041W spliced 28.56876 136.445561 82.5071605 1.916491641 -0.015558 33 62 SH17693 17693 YKL006W_11_431544_432358_INTRON_130_527 intron 51.229528 225.194491 51.229528 174.964963 113.0972455 2.053452028 0.411496 33 63 SH18434 18434 YMR142C_13_551206_550205_INTRON_5_406 intron 32.589162 174.214979 32.589162 142.625817 87.6074895 1.942541235 0.22517 33 64 SH18945 18945 YOL127W_15_80347_81189_INTRON_14_427 intron 61.379872 289.612149 61.379872 229.232277 145.3060745 2.16228377 -0.045603 33 65 SH8959 8959 snR17a / U3a U3a 81 97 30.421455 184.839707 107.630581 2.031935685 -0.152016 33 66 SH6522 6522 snR46 snR46 101 118 34.444298 186.522584 110.483441 2.043297192 -0.004571 33 67 SH19138 19138 YPL075W_16_412249_415357_INTRON_9_759 intron 32.318524 255.104953 32.318524 223.786429 128.0524765 2.107387982 -0.433422 33 68 SH10508 10508 RUF8 RUF8 466 487 30.196979 143.942809 87.069894 1.939868016 0.059493 33 69 SH2664 2664 Pro4 5' flank - tRNA2 2 32.137937 187.085368 109.6116525 2.039856725 -0.092679 33 70 SH21765 21765 copy of SH13600 30.024079 161.152707 95.588393 1.98040516 -0.043897 33 71 SH18120 18120 YLR388W_12_898158_898821_INTRON_1_488 exon/intron 29.944769 196.911362 29.944769 167.966593 98.955681 1.995440732 -0.084285 33 72 SH21445 21445 copy of SH42 31.891705 185.840314 108.8660095 2.036892304 -0.090625 33 73 SH2333 2333 Phe3 5' flank - tRNA10 10 33.855109 189.389058 111.6220835 2.047750125 -0.050975 33 74 SH4972 4972 snR9 3' 37.858108 186.634193 112.2461505 2.050171456 0.073886 33 75 SH5210 5210 snR30 5' 33.851455 179.541825 106.69664 2.028150743 0.038998 33 76 SH15547 15547 YBR078W_2_393082_394818_INTRON_59_388 intron 33.904013 230.746067 33.904013 197.842054 115.8730335 2.063982377 -0.13117 33 77 SH9639 9639 RUF4 5' 31.972516 159.016684 95.4946 1.979978814 0.093834 33 78 SH6139 6139 snR39B snR39B 36 54 34.108252 189.424324 111.766288 2.048310827 -0.042365 33 79 SH12594 12594 MT_15S MT_15S 30.177474 188.93739 30.177474 159.759916 94.968695 1.97758047 -0.02629 33 80 SH10468 10468 RUF8 RUF8 266 287 30.303018 170.755685 100.5293515 2.002292881 -0.078785 33 81 SH3059 3059 Ser3 5' flank - tRNA8 8 34.520283 195.248332 114.8843075 2.060260711 -0.089685 33 82 SH13196 13196 MT COX1 Exon4 30.515058 176.677449 30.515058 147.162391 88.8387245 1.948602315 0.063334 33 83 SH12268 12268 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 40.885854 237.553831 40.885854 197.667977 119.2769155 2.0765564 -0.003693 33 84 SH551 551 Cys1 tRNA 56 68 32.651378 166.070787 99.3610825 1.997216314 0.089011 33 85 SH3262 3262 Thr2 5' flank 30.55884 153.56405 92.061445 1.964077787 0.031815 33 86 SH7175 7175 snR64 5' 30.481029 128.810233 79.645631 1.901161957 0.165773 33 87 SH3205 3205 Ser5 3' flank 36.503218 158.570442 97.53683 1.989168637 0.338942 33 88 SH6544 6544 snR46 3' 30.214775 143.246079 86.730427 1.938171485 0.064515 33 89 SH12574 12574 MT_15S MT_15S 30.046333 185.099417 30.046333 156.053084 93.0497085 1.968715017 -0.01631 33 90 SH21469 21469 copy of SH1239 33.894159 168.782948 101.3385535 2.005774701 0.142384 33 91 SH21216 21216 YOR122C spliced 35.695175 191.284238 113.4897065 2.054956473 -0.021333 33 92 SH14716 14716 MT tRNA cys; tRNA his 5' 30.51353 215.160221 30.51353 185.646691 108.0801105 2.03374578 -0.150793 33 93 SH4058 4058 SRP RNA SRP RNA 181 200 31.335899 166.531869 98.933884 1.995345059 0.00932 33 94 SH3459 3459 Trp1 3' flank 31.174935 162.021886 96.5984105 1.98496998 0.027587 33 95 SH4755 4755 snR5 5' 32.983299 157.249059 95.116179 1.978254396 0.163375 33 96 SH6654 6654 snR48 96-113 + 3' 96 32.829638 160.09497 96.462304 1.984357631 0.136422 33 97 SH3555 3555 Tyr2 tRNA-intron/exon 46 63 34.62461 192.294011 113.4593105 2.05484014 -0.054344 33 98 SH6649 6649 snR48 snR48 71 87 32.536273 176.080794 104.3085335 2.01831984 0.022943 33 99 SH14590 14590 MT 21S rRNA Sce1 endonuc 28.544263 217.099477 28.544263 189.555214 109.0497385 2.037624628 -0.296676 33 100 SH1761 1761 Leu7 3' flank 28.425179 141.39031 84.9077445 1.928947304 -0.053912 33 101 SH5867 5867 snR35 snR35 521 540 34.056719 197.106886 115.5818025 2.062889463 -0.119883 33 102 SH4565 4565 U3b (snR17b) U3b 381 395 33.940314 172.153988 103.047151 2.013035989 0.113043 33 103 SH5353 5353 snR30 3' 28.113917 144.873842 86.4938795 1.936985377 -0.096069 33 104 SH6036 6036 snR37 snR37 96 111 2156.754899 2754.120518 2455.437709 3.390128921 -0.073329 34 2 SH19847 19847 Negative Control 35.020487 185.184786 110.1026365 2.041797719 0.027449 34 3 SH5433 5433 snR31 3' 30.922737 154.48883 92.7057835 1.967106829 0.051518 34 4 SH7480 7480 snR71 snR71 16 30 103.463389 241.549855 172.506622 2.236805771 0.313831 34 5 SH20013 20013 YBR084C-A spliced 33.176881 197.551609 115.364245 2.062071228 -0.146422 34 6 SH20269 20269 YDR424C spliced 31.139005 158.141548 94.6402765 1.976076 0.047051 34 7 SH12210 12210 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 52.280141 240.299813 52.280141 189.019672 120.6499065 2.08152699 0.250556 34 8 SH19980 19980 YBL091C-A spliced 31.229074 163.592807 97.4109405 1.988607736 0.021027 34 9 SH21320 21320 YPL249C-A spliced 33.364846 153.488827 93.4268365 1.970471644 0.209466 34 10 SH20794 20794 YKL156W spliced 31.278302 154.615547 92.9469245 1.968235024 0.074581 34 11 SH11056 11056 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2166 2182 69.399109 201.007756 135.2034325 2.130987717 0.326503 34 12 SH18834 18834 YNL302C_14_62942_61957_INTRON_21_571 intron 31.299783 191.994979 31.299783 161.695196 96.4974895 1.984516015 0.037109 34 13 SH17500 17500 YJL041W_10_365480_368069_INTRON_2_119 3' exon 43.983849 260.07033 43.983849 217.086481 130.535165 2.115727522 -0.170739 34 14 SH10870 10870 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1236 1252 43963.46402 31303.481 37633.47251 4.575574293 -0.018578 34 15 SH15169 15169 MT tRNA Val 3' 31.353663 181.345726 31.353663 150.992063 91.172863 1.959865593 0.098786 34 16 SH2583 2583 Pro2 3' flank 31.400321 138.854687 85.127504 1.9300699 0.169756 34 17 SH19487 19487 YPT1 46.335729 201.53583 123.9357795 2.093196703 0.029596 34 18 SH14012 14012 MT COB intronic 29.439287 196.34163 29.439287 167.902343 98.670815 1.994188715 -0.117956 34 19 SH21787 21787 copy of SH14442 29.550875 145.619472 87.5851735 1.942430595 0.004916 34 20 SH12431 12431 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.11462 196.978798 36.11462 161.864178 98.989399 1.995588688 0.291429 34 21 SH19760 19760 Negative Control 36.295496 206.837452 121.566474 2.08481382 -0.179787 34 22 SH7617 7617 snR189 snR189 156 175 29.991414 149.191965 89.5916895 1.952267726 0.016316 34 23 SH15618 15618 YBR181C_2_592732_591670_INTRON_7_358 intron 30.153653 229.55107 30.153653 200.397417 115.275535 2.061737146 -0.285016 34 24 SH3735 3735 Val4 5' flank 30.311487 151.855981 91.083734 1.959440826 0.02401 34 25 SH18984 18984 YOR096W_15_505793_506766_INTRON_145_545 intron 30.457575 206.560001 30.457575 177.102426 103.7800005 2.016113668 -0.106353 34 26 SH12718 12718 MT ORF 8 (hypothetical) 3' 28.379637 170.921884 28.379637 143.542247 85.960942 1.934301166 -0.06906 34 27 SH14528 14528 MT 21S rRNA 21S rRNA3 30.689766 191.898975 30.689766 162.209209 96.4494875 1.984299924 -0.00368 34 28 SH9700 9700 RUF4 RUF4 276 297 30.767957 153.004167 91.886062 1.963249639 0.048927 34 29 SH14403 14403 MT 21S rRNA 21S rRNA3 30.819888 183.195548 30.819888 153.37566 92.097774 1.964249133 0.050462 34 30 SH16540 16540 YER131W_5_423587_424307_INTRON_1_361 3' exon 98.135837 371.699092 98.135837 274.563255 186.349546 2.270328339 0.01635 34 31 SH10752 10752 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 646 664 42.01111 213.035889 127.5234995 2.105590222 -0.157523 34 32 SH8752 8752 LSR1 / U2 RNA U2 401 413 37.542104 202.655544 120.098824 2.079538755 -0.111844 34 33 SH1099 1099 Gly4 5' flank 30.842709 156.378107 93.610408 1.971324138 0.036294 34 34 SH20303 20303 YER003C spliced 35.274954 190.963113 113.1190335 2.053535686 -0.026052 34 35 SH12045 12045 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7111 7128 30.794267 183.626925 107.210596 2.03023771 -0.122558 34 36 SH3371 3371 Thr4 5' flank 30.75338 153.28264 92.01801 1.963872837 0.046471 34 37 SH6736 6736 snR49 3' 30.696836 139.968664 85.33275 1.931115742 0.115888 34 38 SH21747 21747 copy of SH12762 102.897966 294.365445 198.6317055 2.298048572 -0.070582 34 39 SH15199 15199 MT COX3 cox3 32.735518 182.356236 32.735518 150.620718 91.678118 1.962265689 0.190287 34 40 SH9795 9795 RUF4 RUF4 751 768 30.427126 151.05316 90.740143 1.957799459 0.036206 34 41 SH9252 9252 snR6 / U6 RNA 3' 30.313024 174.060787 102.1869055 2.009395248 -0.097645 34 42 SH11195 11195 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2861 2879 32.373434 143.590557 87.9819955 1.944393808 0.205926 34 43 SH7653 7653 snoRNA cluster1 5' 30.075739 162.002447 30.075739 132.926708 81.5012235 1.911164128 0.113067 34 44 SH5934 5934 snR36 snR36 126 140 51.639334 174.263809 112.9515715 2.052892278 0.425593 34 45 SH21897 21897 copy of SH19002 29.854162 149.117055 89.4856085 1.951753196 0.007204 34 46 SH9102 9102 snR14 / U4 RNA U4 126 142 36.205863 180.711352 108.4586075 2.035264024 0.108589 34 47 SH15202 15202 MT COX3 cox3 29.676455 188.27086 29.676455 159.594405 94.63543 1.97605376 -0.060194 34 48 SH344 344 Arg5 tRNA 56 68 38.166242 189.985308 114.075775 2.057193428 0.040862 34 49 SH6837 6837 snR52 91-92 + 3' 91 28.488937 126.708029 77.598483 1.889853231 0.038589 34 50 SH18778 18778 YNL265C_14_145280_144279_INTRON_28_132 intron 31.639549 206.983973 31.639549 176.344424 103.9919865 2.016999874 -0.030822 34 51 SH12009 12009 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6931 6949 31.593138 185.733804 108.663471 2.036083573 -0.100925 34 52 SH19388 19388 YPR043W_16_654161_654842_INTRON_3_405 intron 29.418751 185.743503 29.418751 157.324752 93.3717515 1.970215506 -0.066691 34 53 SH17443 17443 YIL133C_9_99416_98527_INTRON_32_321 3' exon 94.509227 369.769257 94.509227 276.26003 185.3846285 2.268073721 -0.031943 34 54 SH3155 3155 Ser4 3' flank 29.299348 164.945367 97.1223575 1.987319216 -0.11345 34 55 SH19695 19695 Negative Control 39.793109 179.254333 109.523721 2.03950819 0.19702 34 56 SH2438 2438 Phe5 5' flank 64.032038 264.907816 164.469927 2.2160865 -0.306261 34 57 SH14172 14172 MT COB intronic 31.190409 176.380897 31.190409 146.190488 88.6904485 1.947876851 0.114131 34 58 SH15198 15198 MT COX3 cox3 29.02916 174.670167 29.02916 146.641007 87.8350835 1.943668018 -0.038046 34 59 SH3808 3808 RNaseP RNaseP 6 22 31.065255 168.056678 99.5609665 1.998089104 -0.016157 34 60 SH18232 18232 YML026C_13_223828_222987_INTRON_48_448 intron 28.922714 186.633466 28.922714 158.710752 93.816733 1.972280305 -0.109087 34 61 SH7782 7782 snoRNA cluster1 intergenic 28.871249 160.600316 28.871249 132.729067 80.800158 1.90741221 0.028145 34 62 SH1460 1460 Leu2 tRNA 71 87 101.004006 273.524398 187.264202 2.272454764 0.051637 34 63 SH14268 14268 MT VAR1 includes 5’ processing site VAR1 28.752014 169.068713 28.752014 141.316699 85.0343565 1.92959443 -0.029428 34 64 SH15834 15834 YDL075W_4_322225_322987_INTRON_58_478 intron 32.818953 223.556027 32.818953 191.737074 112.2780135 2.05029472 -0.109003 34 65 SH18735 18735 YNL162W_14_331319_332151_INTRON_5_516 5' exon 34.788843 252.432719 34.788843 218.643876 126.7163595 2.102832687 -0.331089 34 66 SH11646 11646 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5116 5134 42.922122 157.617588 100.269855 2.001170387 0.530725 34 67 SH788 788 Glu1 5' flank 32.498273 162.494416 97.4963445 1.988988333 0.102343 34 68 SH11833 11833 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6051 6064 52958.70354 38429.23523 45693.96938 4.659858886 -0.102146 34 69 SH4700 4700 snR4 snR4 36 53 36.323635 158.217107 97.270371 1.987980572 0.336798 34 70 SH5649 5649 snR34 snR34 166 188 32.131391 142.422419 87.276905 1.940899337 0.196969 34 71 SH15807 15807 YDL061C_4_341182_340627_INTRON_1_408 intron 34.047436 227.134363 34.047436 194.086927 114.0671815 2.057160711 -0.086449 34 72 SH2185 2185 Met2 tRNA 56 68 72.443701 235.647823 154.045762 2.187649755 0.036902 34 73 SH9503 9503 RUF3 5' 35.912473 200.533519 118.222996 2.072701961 -0.119882 34 74 SH17316 17316 YHR203C_8_505526_504472_INTRON_15_283 intron/exon 31.862795 197.932618 31.862795 167.069823 99.466309 1.997676002 0.037214 34 75 SH17204 17204 YHR039C-A_8_187670_187164_INTRON_4_165 5' exon 45.988609 261.646338 45.988609 216.657729 131.323169 2.118341354 -0.137967 34 76 SH16717 16717 YGL031C_7_438393_437938_INTRON_1_456 intron 31.925934 176.750659 31.925934 145.824725 88.8753295 1.948781224 0.164531 34 77 SH8561 8561 snR19 / U1 RNA U1 301 318 33.016884 138.138869 85.5778765 1.932361506 0.278125 34 78 SH21502 21502 copy of SH2552 83.067717 263.833331 173.450524 2.239175616 -0.064621 34 79 SH21279 21279 YPL129W spliced 30.195668 191.074553 110.6351105 2.043892974 -0.20296 34 80 SH11810 11810 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5936 5956 32.349813 156.089575 94.219694 1.974141689 0.134641 34 81 SH9918 9918 RUF5-1 RUF5-1 396 413 32.457721 164.003414 98.2305675 1.992246653 0.090618 34 82 SH14705 14705 MT tRNA thr2 tRNA 34.594851 227.080262 34.594851 193.485411 114.040131 2.057057708 -0.068404 34 83 SH3433 3433 Trp1 5' flank - tRNA10 10 144.6351 350.793723 247.7144115 2.393951274 -0.048917 34 84 SH8828 8828 LSR1 / U2 RNA U2 781 802 30.528225 133.312719 81.920472 1.913392446 0.142257 34 85 SH17591 17591 YJL191W_10_73786_74610_INTRON_11_418 intron 30.483418 199.269638 30.483418 169.78622 100.134819 2.000585117 -0.061904 34 86 SH16421 16421 YER056C-A_5_270183_269421_INTRON_38_434 3' exon 40.645708 257.960945 40.645708 218.315237 129.4804725 2.112204276 -0.233596 34 87 SH7169 7169 snR64 5' 32.31163 179.714655 106.0131425 2.025359708 -0.018395 34 88 SH16385 16385 YER007C-A_5_166884_166236_INTRON_12_114 intron/exon 32.151016 201.53993 32.151016 170.388914 101.269965 2.00548066 0.034062 34 89 SH14526 14526 MT 21S rRNA 21S rRNA3 27.938852 170.830462 27.938852 143.89161 85.915231 1.934070162 -0.103923 34 90 SH21290 21290 YPL175W spliced 31.789259 182.985412 107.3873355 2.030953067 -0.068355 34 91 SH57 57 Ala2 5' flank 31.609176 154.688128 93.148652 1.969176574 0.096038 34 92 SH5609 5609 snR34 5' 31.43997 174.665575 103.0527725 2.01305968 -0.032932 34 93 SH18736 18736 YNL162W_14_331319_332151_INTRON_5_516 exon/intron 33.261477 217.683651 33.261477 185.422174 109.3418255 2.03878632 -0.036446 34 94 SH16012 16012 YDL137W_4_216158_217074_INTRON_1_332 intron 33.113572 191.451611 33.113572 159.338039 96.2258055 1.983291555 0.157336 34 95 SH7878 7878 snoRNA cluster1 snR73 34.940698 198.011742 34.940698 164.071044 99.505871 1.997848706 0.227999 34 96 SH11042 11042 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2096 2109 3568.617439 998.507237 2283.562338 3.358612872 2.178994 34 97 SH9465 9465 RUF2 RUF2 166 183 32.74213 197.351171 115.0466505 2.060873979 -0.16051 34 98 SH14045 14045 MT COB Cytbi4 28.754248 167.392756 28.754248 139.638508 84.196378 1.925293409 -0.019955 34 99 SH12956 12956 MT COX1 COX1ai2 30.595264 193.949708 30.595264 164.354444 97.474854 1.988892593 -0.022023 34 100 SH17834 17834 YKR094C_11_618384_617630_INTRON_9_376 intron 41.135798 253.841561 41.135798 213.705763 127.4207805 2.105240261 -0.177967 34 101 SH20618 20618 YHR097C spliced 32.345804 174.196936 103.27137 2.013979938 0.022896 34 102 SH12494 12494 MT_tRNA Pro 5' 26.499098 150.89861 26.499098 125.399512 75.949305 1.880523804 -0.101719 34 103 SH13733 13733 MT COB Exon1 32.198755 194.628385 32.198755 163.42963 97.8141925 1.990401874 0.079204 34 104 SH10346 10346 RUF7 RUF7 341 357 30.213802 167.632669 98.9232355 1.995298312 -0.065542 35 2 SH1893 1893 Lys1 5' flank 83.212136 274.380901 178.7965185 2.252359058 -0.139802 35 3 SH18656 18656 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.757103 191.274406 30.757103 161.517303 96.137203 1.982891483 0.004331 35 4 SH14695 14695 MT tRNA thr2 5' 30.865831 200.259142 30.865831 170.393311 100.629571 2.002725621 -0.042225 35 5 SH14569 14569 MT 21S rRNA 21S rRNA3 252.069459 739.434892 252.069459 488.365433 370.217446 2.56845688 -0.007645 35 6 SH3190 3190 Ser5 71-82 + 3' flank 71 132.567427 286.046326 209.3068765 2.320783497 0.237622 35 7 SH210 210 Arg3 5' flank 31.109076 185.486632 108.297854 2.034619851 -0.117175 35 8 SH573 573 Gln1 5' flank 29.060656 154.638641 91.8496485 1.963077499 -0.078157 35 9 SH6281 6281 snR42 snR42 186 203 58.612052 231.800311 145.2061815 2.161985105 -0.106286 35 10 SH17177 17177 YHR021C_8_148660_147862_INTRON_4_553 intron 33.320054 226.060079 33.320054 193.740025 113.5300395 2.055110789 -0.108387 35 11 SH16084 16084 YDR025W_4_491510_492319_INTRON_46_384 intron 29.127336 169.270735 29.127336 141.143399 85.1353675 1.930110015 -0.001158 35 12 SH16436 16436 YER074W_5_306319_307192_INTRON_4_469 intron 31.240091 199.276696 31.240091 169.036605 100.138348 2.000600422 -0.011572 35 13 SH6058 6058 snR37 snR37 206 223 31.255187 178.629319 104.942253 2.020950384 -0.06675 35 14 SH17016 17016 YGR148C_7_788173_787307_INTRON_1_392 intron 31.283556 225.418443 31.283556 195.134887 113.2092215 2.053881804 -0.196043 35 15 SH8337 8337 snoRNA cluster4 snR53 29.22374 176.29597 29.22374 148.07223 88.647985 1.947668868 -0.031546 35 16 SH20742 20742 YJL191W spliced 32.467443 177.258516 104.8629795 2.020622193 0.010589 35 17 SH6497 6497 snR46 5' 33.639336 185.01451 109.326923 2.038727125 -0.0192 35 18 SH12127 12127 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7521 7538 39.120308 201.537358 120.328833 2.080369705 -0.074487 35 19 SH18845 18845 YNL312W_14_48286_49215_INTRON_8_115 intron 31.812806 192.186252 31.812806 161.373446 96.593126 1.984946221 0.069525 35 20 SH8232 8232 snoRNA cluster 3; 3' 34.145598 208.33582 34.145598 175.190222 104.66791 2.019813552 0.090765 35 21 SH21475 21475 copy of SH1442 32.177152 187.610862 109.894007 2.040974009 -0.095951 35 22 SH13004 13004 MT COX1 COX1ai2 30.184332 181.529575 30.184332 152.345243 91.2647875 1.960303247 0.01268 35 23 SH3744 3744 Val4 5' flank 30.348811 176.17025 103.2595305 2.013930146 -0.107679 35 24 SH15668 15668 YBR191W_2_606228_607098_INTRON_12_399 5' exon 37.105726 226.485218 37.105726 190.379492 113.742609 2.055923186 0.016411 35 25 SH2065 2065 Lys4 5' flank - tRNA7 7 37.265055 190.98508 114.1250675 2.057381047 0.012526 35 26 SH17587 17587 YJL191W_10_73786_74610_INTRON_11_418 intron 30.73862 228.852175 30.73862 199.113555 114.9260875 2.060418622 -0.251154 35 27 SH12298 12298 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 48.659248 226.571529 48.659248 178.912281 113.7857645 2.056087932 0.32859 35 28 SH17746 17746 YKL157W_11_154993_158183_INTRON_282_664 intron 33.116785 255.005255 33.116785 222.88847 128.0026275 2.107218884 -0.407403 35 29 SH2388 2388 Phe4 5' flank - tRNA8 8 33.161213 154.830594 93.9959035 1.973108927 0.189179 35 30 SH10203 10203 RUF6 RUF6 861 885 30.951514 154.981717 92.9666155 1.968327021 0.050868 35 31 SH7076 7076 snR62 3' 30.95993 167.703988 99.331959 1.997089001 -0.020371 35 32 SH13796 13796 MT COB intronic 30.958151 213.318685 30.958151 183.360534 107.1593425 2.03003004 -0.111161 35 33 SH21508 21508 copy of SH2800 39.895588 164.883706 102.389647 2.010256046 0.379516 35 34 SH11273 11273 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3251 3269 35.401923 185.299612 110.3507675 2.042775358 0.03938 35 35 SH12949 12949 MT COX1 COX1ai2 30.910832 208.331649 30.910832 178.420817 104.6658245 2.019804899 -0.086274 35 36 SH5678 5678 snR34 snR34 311 329 50.986769 178.77308 114.8799245 2.060244141 0.360033 35 37 SH21904 21904 copy of SH19399 30.830335 145.19255 88.0114425 1.944539139 0.095582 35 38 SH14601 14601 MT 21S rRNA Sce1 endonuc 35.211646 174.458403 35.211646 140.246757 87.7292015 1.943144176 0.399419 35 39 SH8416 8416 snoRNA cluster 5 snR190 48.450655 227.784206 48.450655 180.333551 114.392103 2.058396044 0.308057 35 40 SH339 339 Arg5 tRNA 31 50 30.601721 157.064415 93.833068 1.972355916 0.016467 35 41 SH13186 13186 MT COX1 Exon4 30.501808 179.586899 30.501808 150.085091 90.2934495 1.955656245 0.046502 35 42 SH6363 6363 snR43 snR43 56 73 47.980141 236.247453 142.113797 2.152636243 -0.299256 35 43 SH5047 5047 snR10 3' 30.284243 184.177244 107.2307435 2.030319317 -0.156819 35 44 SH9930 9930 RUF5-1 RUF5-1 456 472 30.17314 154.637146 92.405143 1.965696143 -0.000186 35 45 SH7407 7407 snR69 5' 27.897222 136.237178 82.0672 1.914169616 -0.064464 35 46 SH8629 8629 snR19 / U1 RNA U1 641 660 29.965901 142.409228 86.1875645 1.935444609 0.051662 35 47 SH2418 2418 Phe4 3' flank 29.878506 169.227863 99.5531845 1.998055157 -0.096026 35 48 SH5018 5018 snR10 snR10 121 137 415.646927 941.000985 678.323956 2.831437155 -0.487687 35 49 SH9996 9996 RUF5-1 3' 38.347485 185.309067 111.828276 2.04855163 0.098491 35 50 SH6962 6962 snR58 3' 27.562622 142.354798 84.95871 1.92920791 -0.124108 35 51 SH457 457 Asp1 3' flank 29.668742 147.298015 88.4833785 1.946861697 0.004217 35 52 SH19539 19539 CBP1 1.2 29.633817 183.298961 106.466389 2.027212524 -0.192549 35 53 SH1555 1555 Leu4 5' flank 29.596065 149.850694 89.7233795 1.952905623 -0.014791 35 54 SH19705 19705 Negative Control 31.687136 187.121329 109.4042325 2.039034124 -0.109926 35 55 SH4620 4620 snR3 snR3 16 30 33.769355 163.07445 98.4219025 1.993091756 0.170445 35 56 SH699 699 Gln3 tRNA 26 42 82.933856 268.032948 175.483402 2.244236045 -0.097052 35 57 SH13119 13119 MT COX1 COX1ai3 29.415374 161.044317 29.415374 132.628943 81.0221585 1.908603809 0.068056 35 58 SH13559 13559 MT COX1 Exon 6 31.491931 229.587367 31.491931 199.095436 115.2936835 2.061805515 -0.221996 35 59 SH1592 1592 Leu4 3' flank 39.925787 183.242385 111.584086 2.04760226 0.151452 35 60 SH20087 20087 YDL012C spliced 69.616391 194.736642 132.1765165 2.121154302 0.394662 35 61 SH18925 18925 YOL121C_15_92849_92025_INTRON_21_410 intron 31.333951 201.181918 31.333951 170.847967 101.090959 2.004712317 -0.016794 35 62 SH8319 8319 snoRNA cluster4 intergenic 29.155517 160.60857 29.155517 132.453053 80.804285 1.907434392 0.050402 35 63 SH16165 16165 YDR139C_4_733917_733611_INTRON_150_222 5' exon 31.168057 199.027087 31.168057 168.85903 100.0135435 2.000058815 -0.01482 35 64 SH20669 20669 YIL069C spliced 31.05893 171.984679 101.5218045 2.006559329 -0.040011 35 65 SH7484 7484 snR71 snR71 36 57 30.933381 169.456747 100.195064 2.000846327 -0.032538 35 66 SH2062 2062 Lys4 5' flank 32.868046 209.153463 121.0107545 2.082823969 -0.274215 35 67 SH1539 1539 Leu3 3' flank 32.70962 205.833833 119.2717265 2.076537506 -0.242789 35 68 SH6537 6537 snR46 snR46 176 194 32.547048 141.391388 86.969218 1.939365565 0.229529 35 69 SH6212 6212 snR40 3' 30.344033 148.740808 89.5424205 1.95202883 0.043028 35 70 SH5638 5638 snR34 snR34 111 128 38.348386 221.561284 129.954835 2.113792442 -0.302916 35 71 SH19708 19708 Negative Control 34.137794 198.230777 116.1842855 2.065147392 -0.130584 35 72 SH15383 15383 YBL027W_2_168385_169338_INTRON_3_386 intron/exon 40.101103 218.343661 40.101103 179.242558 109.6718305 2.040095092 0.202618 35 73 SH15680 15680 YBR191W_2_606228_607098_INTRON_12_399 intron 49.122473 241.589622 49.122473 193.467149 121.294811 2.083842222 0.158641 35 74 SH4204 4204 telomerase RNA telomerase 56 77 31.918194 150.129814 91.024004 1.959155936 0.140459 35 75 SH7713 7713 snoRNA cluster1 snR77 195.664931 520.122122 195.664931 325.457191 260.561061 2.415909514 0.412486 35 76 SH13335 13335 MT COX1 COX1-ai5a 29.959706 184.22679 29.959706 155.267084 92.613395 1.966673805 -0.018212 35 77 SH19922 19922 YAL030W spliced 32.054201 179.522215 105.788208 2.02443726 -0.02617 35 78 SH6026 6026 snR37 snR37 46 65 34.181155 173.002285 103.59172 2.015325044 0.113219 35 79 SH10090 10090 RUF6 RUF6 296 313 30.221272 191.34946 110.785366 2.044482397 -0.20437 35 80 SH9904 9904 RUF5-1 RUF5-1 326 345 30.318065 160.564816 95.4414405 1.979736986 -0.020715 35 81 SH15535 15535 YBR078W_2_393082_394818_INTRON_59_388 intron 32.448485 174.10123 32.448485 142.652745 87.550615 1.942259201 0.21604 35 82 SH11164 11164 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2706 2728 30.458094 153.173836 91.815965 1.962918203 0.027023 35 83 SH17285 17285 YHR141C_8_382752_381991_INTRON_5_445 intron 30.481263 173.932471 30.481263 144.451208 87.4662355 1.941840435 0.076098 35 84 SH5795 5795 snR35 snR35 161 182 30.464296 128.711763 79.5880295 1.900847752 0.165212 35 85 SH9686 9686 RUF4 RUF4 206 220 425.071163 615.236748 520.1539555 2.716131905 0.238357 35 86 SH12968 12968 MT COX1 COX1ai2 32.348392 193.430428 32.348392 162.082036 97.215214 1.987734237 0.096283 35 87 SH12638 12638 MT_15S MT_15S 32.208011 225.49544 32.208011 194.287429 113.24772 2.054029467 -0.153811 35 88 SH8150 8150 snoRNA cluster 3; intergenic 30.019981 185.323969 30.019981 156.303988 93.1619845 1.969238731 -0.019433 35 89 SH18804 18804 YNL301C_14_64561_63569_INTRON_113_544 intron 33.873607 189.289515 33.873607 156.415908 95.1447575 1.978384864 0.218563 35 90 SH17110 17110 YHR001W-A_8_107819_108115_INTRON_7_69 intron 31.678274 214.369949 31.678274 183.691675 107.6849745 2.03215511 -0.079045 35 91 SH12639 12639 MT_15S MT_15S 45.45005 221.978618 45.45005 177.528568 111.489309 2.047233224 0.305386 35 92 SH6336 6336 snR43 5' 37.280814 172.722059 105.0014365 2.021195241 0.21994 35 93 SH5826 5826 snR35 snR35 316 333 33.166475 151.397619 92.282047 1.965117219 0.212256 35 94 SH912 912 Glu3 71-72 + 3' flank 71 29.111014 123.635266 76.37314 1.882940647 0.10336 35 95 SH6166 6166 snR39B 3' 30.966662 157.793631 94.3801465 1.974880647 0.037317 35 96 SH222 222 Arg3 5' flank 32.826387 189.919992 111.3731895 2.046780657 -0.092664 35 97 SH15122 15122 MT tRNA Phe 5' 28.85121 173.874381 28.85121 146.023171 87.4371905 1.941696195 -0.047706 35 98 SH8781 8781 LSR1 / U2 RNA U2 546 560 103.79367 280.184711 191.9891905 2.283276777 0.032152 35 99 SH6071 6071 snR37 snR37 271 287 30.660476 165.736395 98.1984355 1.992104569 -0.02655 35 100 SH751 751 Gln4 tRNA 26 42 36.416406 159.21574 97.816073 1.990410223 0.329236 35 101 SH13177 13177 MT COX1 Exon4 29.585187 190.359808 29.585187 161.774621 95.679904 1.980820731 -0.077578 35 102 SH11662 11662 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5196 5209 73.361438 208.719941 141.0406895 2.149344422 0.294215 35 103 SH13540 13540 MT COX1 intronic 28.536645 174.855255 28.536645 147.31861 87.9276275 1.944125355 -0.077678 35 104 SH9179 9179 snR7 U5 RNA U5 166 186 28.501481 125.474975 76.988228 1.886424324 0.047599 36 2 SH9281 9281 RUF1 5' 30.523827 168.27525 99.3995385 1.997384368 -0.050346 36 3 SH2920 2920 Pro8 3' flank 28.589292 140.267013 84.4281525 1.926487286 -0.035571 36 4 SH6505 6505 snR46 snR46 16 32 30.793593 153.003062 91.8983275 1.963307608 0.050661 36 5 SH21083 21083 YMR292W spliced 30.90691 184.624492 107.765701 2.032480558 -0.121237 36 6 SH6431 6431 snR45 snR45 1 18 85.753684 225.325029 155.5393565 2.191840298 0.275277 36 7 SH21157 21157 YNL301C spliced 31.079149 167.02924 99.0541945 1.995872871 -0.00909 36 8 SH17014 17014 YGR148C_7_788173_787307_INTRON_1_392 intron 31.134482 204.786251 31.134482 174.651769 102.8931255 2.01238636 -0.051104 36 9 SH5727 5727 snR34 3' 29.070384 158.157742 93.614063 1.971341095 -0.095691 36 10 SH778 778 Glu1 5' flank 37.494151 181.794143 109.644147 2.039985453 0.124277 36 11 SH13317 13317 MT COX1 COX1-ai5a 28.043302 180.779169 28.043302 153.735867 90.8895845 1.958514118 -0.147635 36 12 SH16900 16900 YGL226C-A_7_73156_72747_INTRON_22_170 intron 33.297636 217.101086 33.297636 184.80345 109.050543 2.037627832 -0.029504 36 13 SH770 770 Gln4 3' flank 205.078866 430.270905 317.6748855 2.501982882 -0.028691 36 14 SH14061 14061 MT COB Cytbi4 29.137144 188.168333 29.137144 160.031189 94.5841665 1.975818441 -0.10047 36 15 SH15954 15954 YDL130W_4_229906_230527_INTRON_115_415 intron 33.410408 243.412532 33.410408 211.002124 122.206266 2.087093474 -0.281801 36 16 SH7522 7522 snR79 5' 29.286512 144.233979 86.7602455 1.938320772 -0.006559 36 17 SH8424 8424 snoRNA cluster 5 snR190/intergenic 29.413907 161.358721 29.413907 132.944814 81.1793605 1.909445626 0.066097 36 18 SH7962 7962 snoRNA cluster 2 5' 33.843643 203.443256 33.843643 170.599613 102.221628 2.009542793 0.124931 36 19 SH20095 20095 YDL029W spliced 34.053944 173.259828 103.656886 2.015598158 0.106242 36 20 SH4661 4661 snR3 3' 27.794072 133.211381 80.5027265 1.905810589 -0.053676 36 21 SH20011 20011 YBR084C-A spliced 36.683737 197.491257 117.087497 2.068510522 -0.071555 36 22 SH17100 17100 YHL001W_8_104270_105084_INTRON_130_527 intron 30.338648 182.658205 30.338648 153.319557 91.8291025 1.96298034 0.018098 36 23 SH16195 16195 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 32.708068 225.682531 32.708068 193.974463 113.3412655 2.054388057 -0.132635 36 24 SH4020 4020 SRP RNA 5' - 8 8 32.862526 190.844703 111.8536145 2.048650023 -0.099542 36 25 SH453 453 Asp1 3' flank 32.9897 179.003076 105.996388 2.025291066 0.013178 36 26 SH2030 2030 Lys3 96 + 3' flank 96 115 37.549492 140.148779 88.8491355 1.948653206 0.522726 36 27 SH11270 11270 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3236 3253 42.111494 173.410686 107.76109 2.032461976 0.309265 36 28 SH20353 20353 YER117W spliced 28.75102 144.801954 86.776487 1.938402064 -0.048488 36 29 SH17552 17552 YJL189W_10_75932_76473_INTRON_7_392 exon/intron 31.020449 189.05077 31.020449 159.030321 95.025385 1.977839638 0.034595 36 30 SH7500 7500 snR71 3' 33.282205 170.504749 101.893477 2.008146382 0.098012 36 31 SH17641 17641 YJR145C_10_702761_701720_INTRON_15_270 intron 31.052131 182.073215 31.052131 152.021084 91.5366075 1.961594813 0.073228 36 32 SH16753 16753 YGL076C_7_365994_364333_INTRON_565_1032 intron 31.055355 176.610322 31.055355 146.554967 88.805161 1.948438206 0.103108 36 33 SH11791 11791 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5841 5856 148.725727 330.288619 239.507173 2.379318525 0.090843 36 34 SH9371 9371 RUF1 RUF1 431 449 28.805074 141.273453 85.0392635 1.92961949 -0.025307 36 35 SH11550 11550 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4636 4653 35.511164 180.899947 108.2055555 2.034249559 0.083621 36 36 SH18613 18613 YNL069C_14_494998_493953_INTRON_29_477 intron 31.004558 199.306698 31.004558 169.30214 100.153349 2.000665476 -0.027315 36 37 SH13820 13820 MT COB Cytbi2 33.203353 237.047164 33.203353 204.843811 119.023582 2.075633016 -0.221689 36 38 SH6910 6910 snR58 5' 33.149706 179.488878 106.319292 2.026612076 0.014401 36 39 SH1494 1494 Leu3 5' flank 30.854654 191.771396 111.313025 2.046545985 -0.18324 36 40 SH1436 1436 Leu2 5' flank 33.00033 190.979416 111.989873 2.049178752 -0.09572 36 41 SH6125 6125 snR39B 5' 46.226223 210.5571 128.3916615 2.108536819 -0.07043 36 42 SH973 973 Gly1 3' flank 30.595338 161.456839 96.0260885 1.982389239 -0.006309 36 43 SH5055 5055 snR10 3' 28.292161 193.089802 110.6909815 2.044112238 -0.33203 36 44 SH8707 8707 LSR1 / U2 RNA U2 176 190 34.76928 176.588068 105.678674 2.023987355 0.099038 36 45 SH19694 19694 Negative Control 30.272989 170.795468 100.5342285 2.002313949 -0.080875 36 46 SH14991 14991 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.169046 213.549484 30.169046 184.380438 107.274742 2.030497479 -0.165064 36 47 SH12805 12805 MT COX1 COX1ai1 28.991871 166.696586 28.991871 138.704715 83.848293 1.923494226 0.002607 36 48 SH9239 9239 snR6 / U6 RNA U6 66 78 36.502138 198.3483 117.425219 2.069761379 -0.084497 36 49 SH17764 17764 YKL157W_11_154993_158183_INTRON_282_664 intron/exon 34.269758 230.448508 34.269758 197.17875 115.724254 2.06342439 -0.116265 36 50 SH14062 14062 MT COB Cytbi4 29.907542 172.298313 29.907542 143.390771 86.6491565 1.937764339 0.042203 36 51 SH16551 16551 YER133W_5_432491_433954_INTRON_178_702 intron 29.884047 205.079933 29.884047 176.195886 103.0399665 2.013005709 -0.136676 36 52 SH5615 5615 snR34 5' - 12 -4 12 40.663484 132.015711 86.3395975 1.93621002 0.732401 36 53 SH18188 18188 YML024W_13_225889_226697_INTRON_4_401 intron 315.992276 899.959852 315.992276 584.967576 450.479926 2.653675443 -0.040128 36 54 SH11710 11710 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5436 5449 14848.05049 10725.26685 12786.65867 4.106757072 0.276409 36 55 SH20449 20449 YGL103W spliced 41.684576 206.225526 123.955051 2.093264228 -0.088935 36 56 SH19906 19906 YAL001C spliced 38.421763 187.921531 113.171647 2.053737636 0.069371 36 57 SH15962 15962 YDL130W_4_229906_230527_INTRON_115_415 intron 29.785378 166.388349 29.785378 137.602971 83.6941745 1.92269523 0.065691 36 58 SH8349 8349 snoRNA cluster4 snR53/3' 27.61313 176.428114 27.61313 149.814984 88.714057 1.947992441 -0.160058 36 59 SH11901 11901 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6391 6406 159.436514 324.270094 241.853304 2.383552025 0.19773 36 60 SH1493 1493 Leu3 5' flank 31.821824 190.616049 111.2189365 2.046178738 -0.136069 36 61 SH1376 1376 Leu1 5' flank 29.615712 173.440819 101.5282655 2.006586967 -0.137525 36 62 SH14333 14333 MT VAR1 includes 5’ processing site VAR1 29.529606 171.411319 29.529606 142.881713 86.2056595 1.935535779 0.018191 36 63 SH19688 19688 Negative Control 31.542636 164.198896 97.870766 1.990652987 0.035946 36 64 SH19605 19605 RNA14 1.1 38.806863 150.166437 94.48665 1.975370451 0.504141 36 65 SH9268 9268 RUF1 5' 35.444676 215.259293 125.3519845 2.098131214 -0.284228 36 66 SH13625 13625 MT ATP6 ATP6 28.966515 164.832293 28.966515 136.865778 82.9161465 1.91863911 0.011165 36 67 SH15025 15025 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.86742 238.089073 30.86742 208.221653 119.5445365 2.077529733 -0.321621 36 68 SH10722 10722 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 496 516 28.612269 161.381629 94.996949 1.977709657 -0.145002 36 69 SH21853 21853 copy of SH17603 28.440932 120.432438 74.436685 1.871787024 0.077219 36 70 SH5610 5610 snR34 5' 30.32561 159.294836 94.810223 1.976855168 -0.013766 36 71 SH2106 2106 Met1 5' flank 30.1835 156.70169 93.442595 1.970544891 -0.010218 36 72 SH6170 6170 snR40 5' 32.099927 169.940578 101.0202525 2.00440845 0.033765 36 73 SH781 781 Glu1 5' flank 32.024629 167.886122 99.9553755 1.999806155 0.041733 36 74 SH17026 17026 YGR148C_7_788173_787307_INTRON_1_392 3' exon 38.055844 265.907345 38.055844 228.851501 133.4536725 2.12533053 -0.381481 36 75 SH792 792 Glu1 5' flank 37.054483 204.163796 120.6091395 2.081380219 -0.136809 36 76 SH9328 9328 RUF1 RUF1 216 232 35.079747 212.162814 123.6212805 2.092093238 -0.259254 36 77 SH3618 3618 Val1 3' flank 32.114018 137.126147 84.6200825 1.927473444 0.226546 36 78 SH19871 19871 Negative Control 34.233233 205.793943 120.013588 2.07923042 -0.210157 36 79 SH1061 1061 Gly3 tRNA 41 53 100.945451 267.854959 184.400205 2.2657614 0.091122 36 80 SH14543 14543 MT 21S rRNA 21S rRNA3 32.375159 184.91733 32.375159 153.542171 92.958665 1.968289878 0.151753 36 81 SH21081 21081 YMR292W spliced 169.36228 362.907743 266.1350115 2.425102012 0.059298 36 82 SH5283 5283 snR30 snR30 266 282 32.482258 148.405535 90.4438965 1.956379264 0.186172 36 83 SH4829 4829 snR8 5' 32.487038 163.651651 98.0693445 1.991533272 0.094487 36 84 SH18687 18687 YNL112W_14_413636_416278_INTRON_1274_2275 intron 32.451466 188.71999 32.451466 157.268524 94.859995 1.977083097 0.132861 36 85 SH6960 6960 snR58 3' 32.374039 186.231731 109.302885 2.038631625 -0.076193 36 86 SH3046 3046 Ser3 5' flank 32.257287 179.851478 106.0543825 2.02552862 -0.021696 36 87 SH13880 13880 MT COB intronic 32.107531 185.390877 32.107531 154.283346 93.1954385 1.969394656 0.130625 36 88 SH8208 8208 snoRNA cluster 3; snR51 29.918919 153.362268 29.918919 124.443349 77.181134 1.887511155 0.15426 36 89 SH12540 12540 MT_ORF6 + ORF7 (hypothetical) ORF6/7 33.752503 212.023451 33.752503 179.270948 106.5117255 2.02739742 0.038039 36 90 SH4968 4968 snR9 3' 37.54235 193.971278 115.756814 2.063546565 -0.016019 36 91 SH19965 19965 YBL059W spliced 35.346146 199.642569 117.4943575 2.070017011 -0.12143 36 92 SH8733 8733 LSR1 / U2 RNA U2 306 325 35.164365 145.608083 90.386224 1.956102244 0.361218 36 93 SH3693 3693 Val3 5' flank 33.043498 139.044238 86.043868 1.934719925 0.274506 36 94 SH6142 6142 snR39B snR39B 51 67 30.96516 161.456642 96.210901 1.983224282 0.018516 36 95 SH2655 2655 Pro4 5' flank 34.774315 205.925992 120.3501535 2.080446649 -0.200459 36 96 SH9321 9321 RUF1 RUF1 181 200 28.85548 144.22295 86.539215 1.937212951 -0.037727 36 97 SH20840 20840 YLL050C spliced 32.686042 155.689261 94.1876515 1.973993968 0.156579 36 98 SH18570 18570 YNL012W_14_609682_611661_INTRON_106_189 intron 30.698835 207.864789 30.698835 178.165954 104.4323945 2.018835236 -0.097686 36 99 SH13220 13220 MT COX1 COX1-ai4 29.694816 190.457341 29.694816 161.762525 95.7286705 1.981042027 -0.069842 36 100 SH5681 5681 snR34 snR34 326 342 33.545082 178.827366 106.186224 2.026068177 0.034835 36 101 SH20990 20990 YML073C spliced 36.438052 209.101483 122.7697675 2.089091433 -0.201314 36 102 SH8250 8250 snoRNA cluster4 5' 28.662896 167.621455 28.662896 139.958559 84.3107275 1.925882837 -0.02844 36 103 SH7087 7087 snR63 5' 30.592675 147.681787 89.137231 1.950059139 0.065752 36 104 SH5238 5238 snR30 snR30 41 56 32.536019 200.182491 116.359255 2.065800932 -0.192112 37 2 SH10692 10692 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 346 363 84.952001 214.344376 149.6481885 2.175071464 0.366838 37 3 SH5477 5477 snR32 snR32 46 63 36.887456 177.889532 107.388494 2.030957752 0.157489 37 4 SH7196 7196 snR64 snR64 46 63 55.882716 221.226798 138.554757 2.141621441 -0.04482 37 5 SH5202 5202 snR13 3' 30.91286 162.664834 96.788847 1.985825316 0.007782 37 6 SH12132 12132 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7546 7559 31.01598 167.786674 99.401327 1.997392182 -0.017491 37 7 SH10674 10674 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 256 276 33.192306 137.825516 85.508911 1.932011376 0.290962 37 8 SH7010 7010 snR60 3' 29.050728 151.834154 90.442441 1.956372275 -0.06404 37 9 SH17713 17713 YKL081W_11_282533_284097_INTRON_206_531 intron 67.037161 317.026306 67.037161 250.989145 159.013153 2.201433049 -0.157451 37 10 SH16674 16674 YFR032C-A_6_223758_223245_INTRON_1_331 intron 33.282836 186.906963 33.282836 154.624127 93.9534815 1.972912878 0.197378 37 11 SH9061 9061 snR14 / U4 RNA 5' 30.123975 167.261378 98.6926765 1.994284927 -0.068856 37 12 SH4853 4853 snR8 snR8 46 60 31.162232 192.663471 111.9128515 2.048879962 -0.179189 37 13 SH10334 10334 RUF7 RUF7 281 298 83.922553 264.123589 174.023071 2.240606828 -0.05729 37 14 SH16355 16355 YDR500C_4_1450856_1450201_INTRON_8_396 intron 29.089559 176.804133 29.089559 148.714574 88.9020665 1.948911856 -0.044611 37 15 SH1681 1681 Leu6 5' flank 33.358894 151.216407 92.2876505 1.96514359 0.224287 37 16 SH9565 9565 RUF3 RUF3 211 230 29.253388 127.070093 78.1617405 1.892994222 0.090684 37 17 SH9438 9438 RUF2 RUF2 31 50 29.400719 150.632127 90.016423 1.954321751 -0.032748 37 18 SH16682 16682 YGL030W_7_439087_439634_INTRON_4_233 intron 35.996082 238.648392 35.996082 203.65231 119.824196 2.078544524 -0.151848 37 19 SH20549 20549 YGR225W spliced 31.949354 156.071678 94.010516 1.973176436 0.11104 37 20 SH1030 1030 Gly2 3' flank 30.022996 169.271152 99.647074 1.998464551 -0.087268 37 21 SH16645 16645 YFR031C-A_6_221405_220494_INTRON_5_151 5' exon 34.609159 227.535969 34.609159 193.92681 114.2679845 2.057924567 -0.073074 37 22 SH5410 5410 snR31 snR31 116 134 32.641243 182.800136 107.7206895 2.032299125 -0.034963 37 23 SH4990 4990 snR10 5' - 2 -19 2 28.410069 143.750652 86.0803605 1.934904077 -0.067934 37 24 SH5108 5108 snR11 snR11 141 153 30.760185 158.500496 94.6303405 1.976030403 0.019813 37 25 SH21754 21754 copy of SH13179 30.871263 171.055104 100.9631835 2.004163036 -0.045834 37 26 SH9318 9318 RUF1 RUF1 166 183 48.864523 142.090431 95.477477 1.979900934 0.848327 37 27 SH419 419 Asp1 5' flank 34.375281 171.863826 103.1195535 2.013341024 0.131145 37 28 SH9521 9521 RUF3 5' - 8 -9 8 35.546914 202.1634 118.855157 2.07501803 -0.144751 37 29 SH2567 2567 Pro2 tRNA 71 83 945.732389 1173.328083 1059.530236 3.025113355 0.194427 37 30 SH10398 10398 RUF8 5' 33.362425 188.979279 111.170852 2.045990934 -0.064881 37 31 SH3100 3100 Ser4 5' flank 31.13232 163.908329 97.5203245 1.989095138 0.013269 37 32 SH7978 7978 snoRNA cluster 2 snR57 42.399544 198.489667 42.399544 157.090123 99.7448335 1.99889041 0.529359 37 33 SH16842 16842 YGL178W_7_167356_170575_INTRON_4_643 intron 37.90101 218.763253 37.90101 181.862243 109.8816265 2.040925079 0.131097 37 34 SH10038 10038 RUF6 RUF6 36 53 33.400179 192.509566 112.9548725 2.05290497 -0.094759 37 35 SH17323 17323 YIL004C_9_348502_347943_INTRON_12_142 intron 31.145586 180.446209 31.145586 150.300623 90.7231045 1.957717903 0.088685 37 36 SH1207 1207 Ile1 5' flank - tRNA11 11 33.378192 158.115586 95.746889 1.981124672 0.18004 37 37 SH6182 6182 snR40 5' 31.104939 181.853016 106.4789775 2.027263872 -0.09393 37 38 SH20616 20616 YHR097C spliced 33.30939 185.786843 109.5481165 2.039604915 -0.038037 37 39 SH8120 8120 snoRNA cluster 3; snR41 31.016028 171.238627 31.016028 141.222599 86.1193135 1.935100559 0.130503 37 40 SH19478 19478 ADH1 35.422362 190.378895 112.9006285 2.05269636 -0.016429 37 41 SH4962 4962 snR9 3' 30.876641 166.61559 98.7461155 1.99452002 -0.018792 37 42 SH8961 8961 snR17a / U3a U3a 91 108 30.788456 137.97806 84.383258 1.926256289 0.133328 37 43 SH14306 14306 MT VAR1 includes 5’ processing site VAR1 28.475668 167.21544 28.475668 139.739772 84.10772 1.92483586 -0.041024 37 44 SH16909 16909 YGL232W_7_62074_63001_INTRON_58_115 intron/exon 28.375472 175.792632 28.375472 148.41716 88.396316 1.946434166 -0.095396 37 45 SH832 832 Glu2 5' flank 30.469538 175.080106 102.774822 2.011886733 -0.09395 37 46 SH8102 8102 snoRNA cluster 3; 5' 128.079294 465.983587 128.079294 338.904293 233.4917935 2.368271621 -0.112769 37 47 SH7771 7771 snoRNA cluster1 snR76/intergenic 30.266069 160.065161 30.266069 130.799092 80.5325805 1.905971615 0.138927 37 48 SH5271 5271 snR30 snR30 206 220 32.369402 165.716405 99.0429035 1.995823363 0.074967 37 49 SH12375 12375 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.139011 177.011386 30.139011 147.872375 89.005693 1.949417786 0.033702 37 50 SH14521 14521 MT 21S rRNA 21S rRNA3 38.816259 235.664793 38.816259 197.848534 118.3323965 2.07310366 -0.036954 37 51 SH18545 18545 YMR230W_13_732413_733140_INTRON_53_462 intron 29.022489 168.179269 29.022489 140.15678 84.5896345 1.927317148 -0.003286 37 52 SH20155 20155 YDL125C spliced 32.293496 180.377547 106.3355215 2.026678365 -0.025281 37 53 SH10731 10731 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 541 554 32.313262 165.12605 98.719656 1.994403633 0.075348 37 54 SH5998 5998 snR37 5' 34.51279 161.577306 98.045048 1.991425663 0.220524 37 55 SH13373 13373 MT COX1 intronic 30.173963 213.256146 30.173963 184.082183 107.128073 2.029903293 -0.163114 37 56 SH20432 20432 YGL076C spliced 30.184238 185.829863 108.0070505 2.033452106 -0.172078 37 57 SH12321 12321 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.185841 172.789299 30.185841 143.603458 86.8946495 1.938993036 0.060555 37 58 SH7854 7854 snoRNA cluster1 intergenic 54.201444 277.159614 54.201444 223.95817 139.079807 2.143264079 -0.094095 37 59 SH16379 16379 YER007C-A_5_166884_166236_INTRON_12_114 5' exon 443.008473 1183.408396 443.008473 741.399923 592.204198 2.772471482 -0.017703 37 60 SH14468 14468 MT 21S rRNA 21S rRNA3 27.929834 157.636767 27.929834 130.706933 79.3183835 1.899373855 -0.027925 37 61 SH6331 6331 snR42 3' 34.360497 153.986303 94.1734 1.97392825 0.261147 37 62 SH15570 15570 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.919999 189.655222 29.919999 160.735223 95.327611 1.979218709 -0.049003 37 63 SH14047 14047 MT COB Cytbi4 29.783593 213.64981 29.783593 184.866217 107.324905 2.030700513 -0.191775 37 64 SH20465 20465 YGL183C spliced 51.044835 214.904974 132.9749045 2.123769687 -0.048583 37 65 SH19125 19125 YPL075W_16_412249_415357_INTRON_9_759 5' exon 31.55324 178.008683 31.55324 147.455443 89.5043415 1.951844102 0.131154 37 66 SH8600 8600 snR19 / U1 RNA U1 496 515 31.332867 181.579478 106.4561725 2.027170848 -0.078753 37 67 SH5128 5128 snR11 snR11 241 257 35.293839 165.145768 100.2198035 2.000953547 0.23002 37 68 SH12441 12441 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 49.627924 215.096398 49.627924 166.468474 108.048199 2.033617532 0.505162 37 69 SH20748 20748 YJL205C-A spliced 28.594637 123.633983 76.11431 1.881466315 0.06656 37 70 SH10588 10588 RUF8 RUF8 866 882 30.462666 142.470864 86.466765 1.936849211 0.085952 37 71 SH18563 18563 YMR292W_13_854795_855293_INTRON_23_104 3' exon 32.339694 174.901551 32.339694 143.561857 87.9507755 1.944239673 0.203924 37 72 SH8843 8843 LSR1 / U2 RNA U2 856 868 9960.915714 5811.169988 7886.042851 3.896859133 0.735092 37 73 SH10504 10504 RUF8 RUF8 446 462 30.094433 166.460064 98.2772485 1.992452989 -0.065811 37 74 SH10310 10310 RUF7 RUF7 161 177 30.057684 179.372683 104.7151835 2.020009658 -0.144001 37 75 SH18630 18630 YNL096C_14_444312_443395_INTRON_145_489 intron 32.085302 176.183093 32.085302 145.097791 88.5915465 1.947392283 0.178914 37 76 SH16940 16940 YGR027C_7_534779_534126_INTRON_1_312 intron 34.150868 186.090056 34.150868 152.939188 93.545028 1.971020709 0.25664 37 77 SH3421 3421 Trp1 5' flank 32.183147 191.971072 112.0771095 2.049516922 -0.134497 37 78 SH13841 13841 MT COB Cytbi2 30.220385 194.818311 30.220385 165.597926 97.9091555 1.990823305 -0.052727 37 79 SH5008 5008 snR10 snR10 71 87 36.413985 200.516477 118.465231 2.073590906 -0.109886 37 80 SH2948 2948 Ser1 5' flank 32.394397 170.799409 101.596903 2.006880469 0.045715 37 81 SH9961 9961 RUF5-1 RUF5-1 611 630 32.440587 167.459532 99.9500595 1.999783057 0.068442 37 82 SH20239 20239 YDR305C spliced 32.460294 180.809699 106.6349965 2.027899759 -0.023147 37 83 SH14205 14205 MT COB 3' 30.399431 217.165187 30.399431 187.765756 109.0825935 2.037755455 -0.169328 37 84 SH9844 9844 RUF5-1 RUF5-1 26 47 32.396111 188.620276 110.5081935 2.043394479 -0.096882 37 85 SH12478 12478 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 591.819587 1326.136405 591.819587 735.316818 663.5682025 2.821885567 0.357628 37 86 SH19335 19335 YPL241C_16_96258_95372_INTRON_26_105 5' exon 32.179263 192.622156 32.179263 161.442893 96.811078 1.985925056 0.090498 37 87 SH16853 16853 YGL183C_7_157071_156547_INTRON_4_86 intron 38.089449 223.184739 38.089449 186.09529 112.0923695 2.04957605 0.084494 37 88 SH18990 18990 YOR096W_15_505793_506766_INTRON_145_545 3' exon 31.838993 176.340787 31.838993 145.501794 88.6703935 1.947778636 0.160668 37 89 SH18089 18089 YLR367W_12_855877_857316_INTRON_698_1180 5' exon 31.644867 199.130212 31.644867 168.485345 100.065106 2.00028266 0.015812 37 90 SH18851 18851 YNR053C_14_723108_721117_INTRON_811_1341 5' exon 29.465079 176.873624 29.465079 148.408545 88.936812 1.949081558 -0.016162 37 91 SH14357 14357 MT ORF9 and ORF10 (hypothetical) ORF9 29.291239 182.486596 29.291239 154.195357 91.743298 1.962574348 -0.05943 37 92 SH9359 9359 RUF1 RUF1 371 387 31.097505 157.478331 94.287918 1.974456046 0.047688 37 93 SH187 187 Arg2 51-65 51 65 44.663467 196.789827 120.726647 2.081803139 0.059855 37 94 SH5224 5224 snR30 5' 34.738907 134.947279 84.843093 1.928616493 0.402572 37 95 SH2707 2707 Pro5 5' flank 44.377488 194.153307 119.2653975 2.07651446 0.086486 37 96 SH7260 7260 snR65 snR65 76 95 30.69356 139.177609 84.9355845 1.92908968 0.12008 37 97 SH5467 5467 snR32 5' - 13 -4 13 32.589388 185.494938 109.042163 2.037594458 -0.061562 37 98 SH1799 1799 Leu8 tRNA 21 37 38.378473 190.061128 114.2198005 2.057741397 0.043917 37 99 SH7940 7940 snoRNA cluster1 3' 28.680309 155.531811 28.680309 127.851502 78.2659055 1.893572614 0.044913 37 100 SH2800 2800 Pro6 91-102 + 3' flank 91 36.426699 163.326083 99.876391 1.999462841 0.286564 37 101 SH18322 18322 YML085C_13_99400_97941_INTRON_26_141 intron 26.742359 147.250329 26.742359 121.50797 74.1251645 1.86996567 -0.056711 37 102 SH1241 1241 Ile2 5' flank 30.625099 184.426647 107.525873 2.031512977 -0.137271 37 103 SH515 515 Asp2 3' flank 30.638331 182.803292 106.7208115 2.028249119 -0.127481 37 104 SH1248 1248 Ile2 5' flank 28.702356 155.237285 91.9698205 1.963645339 -0.107033 38 2 SH4218 4218 telomerase RNA telomerase 126 138 32.620204 179.810094 106.215149 2.026186463 -0.007905 38 3 SH1127 1127 Gly4 3' flank 30.699842 156.837152 93.768497 1.972056955 0.024284 38 4 SH10005 10005 RUF5-1 3' 30.842025 160.782055 95.81204 1.981420087 0.013749 38 5 SH16625 16625 YFL039C_6_54695_53260_INTRON_11_318 intron 30.966738 197.102511 30.966738 167.135773 99.0512555 1.995859985 -0.016512 38 6 SH10728 10728 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 526 543 33.165617 160.889041 97.027329 1.986894076 0.150429 38 7 SH21886 21886 copy of SH18601 29.045709 191.560831 110.30327 2.042588388 -0.274814 38 8 SH16923 16923 YGL251C_7_31636_27921_INTRON_59_210 3' exon 31.189272 204.366762 31.189272 174.17749 102.683381 2.01150016 -0.045055 38 9 SH13823 13823 MT COB Cytbi2 29.102536 181.120424 29.102536 153.017888 91.060212 1.959328657 -0.066633 38 10 SH21102 21102 YNL050C spliced 29.091819 158.38661 93.7392145 1.97192131 -0.095332 38 11 SH18272 18272 YML056C_13_164176_162194_INTRON_461_868 intron 29.065092 175.225196 29.065092 147.160104 88.112598 1.945038007 -0.038195 38 12 SH9706 9706 RUF4 RUF4 306 318 31.130965 165.101316 98.1161405 1.991740456 0.005819 38 13 SH1748 1748 Leu7 tRNA 36 51 64.768947 207.39906 136.0840035 2.133807077 0.20541 38 14 SH14606 14606 MT 21S rRNA Sce1 endonuc 31.126891 248.779437 31.126891 218.652546 124.8897185 2.096526687 -0.409456 38 15 SH157 157 Arg2 5' flank 31.186951 171.839081 101.513016 2.006521731 -0.031461 38 16 SH9603 9603 RUF3 RUF3 401 417 106.498816 278.20998 192.354398 2.28410212 0.070718 38 17 SH4121 4121 SRP RNA SRP RNA 496 508 65.51801 225.988824 145.753417 2.163618745 0.037092 38 18 SH17682 17682 YKL006W_11_431544_432358_INTRON_130_527 intron 35.963539 216.938964 35.963539 181.975425 108.969482 2.037304886 0.088782 38 19 SH16189 16189 YDR367W_4_1212837_1213603_INTRON_31_131 3' exon 29.79512 201.714014 29.79512 172.918894 101.357007 2.005853778 -0.123173 38 20 SH13810 13810 MT COB Cytbi2 27.876096 184.501082 27.876096 157.624986 92.750541 1.967316451 -0.180017 38 21 SH3745 3745 Val4 5' flank 32.468332 181.639683 107.0540075 2.029602929 -0.030579 38 22 SH16572 16572 YER133W_5_432491_433954_INTRON_178_702 3' exon 30.499555 195.050393 30.499555 165.550838 98.0251965 1.991337722 -0.035249 38 23 SH800 800 Glu1 tRNA 16 30 1781.108427 1581.787106 1681.447767 3.225683381 0.542569 38 24 SH9144 9144 snR7 U5 RNA 5' - 7 -9 7 31.938831 196.851312 114.3950715 2.058407314 -0.185988 38 25 SH5984 5984 snR36 3' 30.935658 137.951174 84.443416 1.926565794 0.143525 38 26 SH5125 5125 snR11 snR11 226 245 29.89654 148.986774 89.441657 1.951539836 0.010856 38 27 SH17235 17235 YHR077C_8_255757_252375_INTRON_7_119 3' exon 31.072608 210.472081 31.072608 180.399473 105.7360405 2.024223043 -0.087721 38 28 SH8742 8742 LSR1 / U2 RNA U2 351 368 31.114997 139.130218 85.1226075 1.930044919 0.149067 38 29 SH14806 14806 "MT tRNAs (Lys, Arg1, Gly)" intergenic 33.396043 207.888229 33.396043 175.492186 104.4441145 2.018883972 0.061269 38 30 SH8670 8670 LSR1 / U2 RNA 5' - 5 -9 5 36.803404 210.477419 123.6404115 2.092160442 -0.210315 38 31 SH10744 10744 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 606 623 37.958966 194.163533 116.0612495 2.064687242 -0.010368 38 32 SH2955 2955 Ser1 tRNA 6 18 1058.846256 1554.571393 1306.708825 3.116178824 -0.108741 38 33 SH3965 3965 RNase MRP RNaseMRP 241 259 31.235711 154.770989 93.00335 1.968498592 0.070939 38 34 SH2752 2752 Pro5 3' flank 35.761754 166.620915 101.1913345 2.005143323 0.230792 38 35 SH13861 13861 MT COB Cytbi2 31.253885 188.177815 31.253885 157.92393 94.5889075 1.975840209 0.055809 38 36 SH11842 11842 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6096 6109 22120.94301 21393.67498 21757.30899 4.33760518 -0.305226 38 37 SH12830 12830 MT COX1 COX1ai1 33.490993 236.41364 33.490993 203.922647 118.70682 2.074475671 -0.205771 38 38 SH19437 19437 YPR187W_16_911252_911795_INTRON_21_96 5' exon 39.101527 226.774818 39.101527 188.673291 113.887409 2.056475713 0.073083 38 39 SH11640 11640 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5086 5102 14446.93297 12186.30887 13316.62092 4.124394037 0.037777 38 40 SH17675 17675 YKL006W_11_431544_432358_INTRON_130_527 5' exon 33.364184 212.398226 33.364184 180.034042 106.699113 2.028160809 0.017009 38 41 SH10438 10438 RUF8 RUF8 116 132 35.53551 177.026138 106.280824 2.026454913 0.120969 38 42 SH8904 8904 LSR1 / U2 RNA 1161-1175 + 3' 1161 30.969973 122.805861 76.887917 1.885858095 0.236489 38 43 SH21225 21225 YOR182C spliced 30.874204 172.728955 101.8015795 2.007754516 -0.05555 38 44 SH20757 20757 YJR094W-A spliced 55.264602 235.314884 145.289743 2.162234956 -0.184546 38 45 SH19553 19553 CBP1 2.2 37.295658 201.994137 119.6448975 2.077894182 -0.10895 38 46 SH7301 7301 snR66 5' - 17 -4 17 33.851121 195.4132 114.6321605 2.059306478 -0.105372 38 47 SH3707 3707 Val3 tRNA 16 30 30.447309 170.12273 100.2850195 2.001236063 -0.066131 38 48 SH8766 8766 LSR1 / U2 RNA U2 471 486 253.009467 427.205485 340.107476 2.531616178 0.225553 38 49 SH21781 21781 copy of SH14231 30.332232 185.174591 107.7534115 2.032431029 -0.159346 38 50 SH144 144 Arg1 3' flank 30.32214 173.033757 101.6779485 2.007226775 -0.09107 38 51 SH4466 4466 telomerase RNA 3' 30.340977 183.224774 106.7828755 2.028501612 -0.148052 38 52 SH3089 3089 Ser3 3' flank 32.574294 162.374964 97.474629 1.988891591 0.107458 38 53 SH9121 9121 snR14 / U4 RNA 3' 54.667957 238.011637 146.339797 2.165362448 -0.217015 38 54 SH10396 10396 RUF8 5' 34.891131 196.58397 115.7375505 2.063474287 -0.096972 38 55 SH8729 8729 LSR1 / U2 RNA U2 286 307 28.335013 118.228436 73.2817245 1.864995681 0.084852 38 56 SH14347 14347 MT VAR1 includes 5’ processing site 3' 34.991161 232.280522 34.991161 198.289361 116.640261 2.066848483 -0.113759 38 57 SH13235 13235 MT COX1 COX1-ai4 28.391213 204.901796 28.391213 177.510583 102.950898 2.012630139 -0.240026 38 58 SH768 768 Gln4 3' flank 39.442551 168.637505 104.040028 2.01720046 0.32373 38 59 SH6412 6412 snR45 5' 32.783174 161.725214 97.254194 1.987908339 0.123481 38 60 SH16312 16312 YDR471W_4_1401759_1402553_INTRON_32_415 5' exon 32.725182 233.015809 32.725182 201.290627 117.0079045 2.068215202 -0.194483 38 61 SH8175 8175 snoRNA cluster 3; snR70 34.827399 192.31749 34.827399 158.490091 96.658745 1.985241152 0.257088 38 62 SH51 51 Ala1 3' flank 28.121506 145.593831 86.8576685 1.938808168 -0.099364 38 63 SH7527 7527 snR79 5' 30.143601 128.977913 79.560757 1.900698907 0.141315 38 64 SH20218 20218 YDR092W spliced 34.270223 192.659962 113.4650925 2.054862272 -0.065763 38 65 SH13857 13857 MT COB Cytbi2 31.868534 191.259836 31.868534 160.391302 96.129918 1.982858572 0.078999 38 66 SH20029 20029 YBR181C spliced 40.132351 241.551505 140.841928 2.148731962 -0.469235 38 67 SH19792 19792 Negative Control 33.453938 192.235136 112.844537 2.052480539 -0.090425 38 68 SH9652 9652 RUF4 RUF4 36 53 31.079781 170.397652 100.7387165 2.003196413 -0.029338 38 69 SH11820 11820 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5986 6002 45.390563 172.766347 109.078455 2.037738978 0.366739 38 70 SH9518 9518 RUF3 5' 30.610681 161.580478 96.0955795 1.98270341 -0.005889 38 71 SH13689 13689 MT ORF 5 (hypothetical) ORF5 30.42692 181.384586 30.42692 151.957666 91.192293 1.959958136 0.031355 38 72 SH15024 15024 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 34.369086 188.835201 34.369086 155.466115 94.9176005 1.977346751 0.251897 38 73 SH21251 21251 YPL075W spliced 28.164449 150.713751 89.4391 1.95152742 -0.123084 38 74 SH1097 1097 Gly4 5' flank 32.183775 156.873581 94.528678 1.975563584 0.119931 38 75 SH5921 5921 snR36 snR36 61 77 34.211922 175.781508 104.996715 2.021175712 0.087404 38 76 SH10999 10999 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1881 1898 44186.72726 32604.08545 38395.40636 4.584279268 -0.076593 38 77 SH3295 3295 Thr2 3' flank 30.222909 140.166246 85.1945775 1.930411953 0.08202 38 78 SH7949 7949 snoRNA cluster1 3' 40.48701 243.847455 40.48701 204.360445 122.4237275 2.087865599 -0.085667 38 79 SH5344 5344 snR30 snR30 571 587 32.373549 169.255629 100.814589 2.003523384 0.053736 38 80 SH5848 5848 snR35 snR35 426 445 31.395774 191.79361 111.594692 2.047643538 -0.162609 38 81 SH21346 21346 YPR132W spliced 34.494258 186.126572 110.310415 2.042616518 0.000752 38 82 SH8346 8346 snoRNA cluster4 snR53 32.447351 182.792956 32.447351 151.345605 91.896478 1.963298867 0.168048 38 83 SH16739 16739 YGL076C_7_365994_364333_INTRON_565_1032 intron 34.465826 192.360519 34.465826 158.894693 96.6802595 1.985337807 0.234989 38 84 SH5061 5061 snR11 5' 42.582119 194.88626 118.7341895 2.074575792 0.053091 38 85 SH7950 7950 snoRNA cluster1 3' 35.312445 232.193351 35.312445 197.880906 116.5966755 2.066686168 -0.102802 38 86 SH13471 13471 MT COX1 intronic 32.122578 235.090314 32.122578 203.967736 118.045157 2.072048174 -0.239042 38 87 SH5543 5543 snR33 snR33 1 17 35.993662 165.067159 100.5304105 2.002297456 0.254345 38 88 SH1914 1914 Lys1 tRNA 26 45 63.974007 184.714426 124.3442165 2.09462559 0.441374 38 89 SH19550 19550 CBP1 2.2 33.558782 176.337397 104.9480895 2.020974537 0.058985 38 90 SH2318 2318 Phe3 5' flank 33.341546 144.902585 89.1220655 1.949985243 0.259709 38 91 SH7561 7561 snR79 3' 31.166234 157.541212 94.353723 1.974759041 0.051946 38 92 SH17397 17397 YIL069C_9_232366_231550_INTRON_4_412 intron 33.92643 208.265386 33.92643 175.338956 104.632693 2.019667403 0.081619 38 93 SH1643 1643 Leu5 tRNA 81 97 3149.387695 3421.144346 3285.266021 3.516570542 0.082373 38 94 SH11427 11427 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4021 4034 47432.36561 33235.71626 40334.04093 4.605671735 -0.014987 38 95 SH7046 7046 snR62 snR62 21 41 36.444527 169.994325 103.219426 2.01376144 0.219624 38 96 SH17044 17044 YGR214W_7_920570_921783_INTRON_91_545 5' exon 34.442028 214.16362 34.442028 180.721592 107.58181 2.031738847 0.048665 38 97 SH21616 21616 copy of SH7317 32.473865 159.294305 95.884085 1.981746528 0.121147 38 98 SH15593 15593 YBR089C-A_2_426588_426148_INTRON_1_114 5' exon 36.323194 248.121309 36.323194 212.798115 124.5606545 2.095380882 -0.243256 38 99 SH20148 20148 YDL115C spliced 188.157443 375.554506 281.8559745 2.450027245 0.114095 38 100 SH1292 1292 Ile2 3' flank 30.544163 149.11685 89.8305065 1.953423848 0.054625 38 101 SH19267 19267 YPL143W_16_282121_282969_INTRON_20_544 intron 33.468907 227.818004 33.468907 195.349097 114.409002 2.058460197 -0.117004 38 102 SH2392 2392 Phe4 tRNA 11 25 363.726641 543.830633 453.778637 2.656844046 0.252558 38 103 SH7906 7906 snoRNA cluster1 intergenic 28.675607 189.724045 28.675607 162.048438 95.3620225 1.979375453 -0.143754 38 104 SH8740 8740 LSR1 / U2 RNA U2 341 357 38.473836 152.540991 95.5074135 1.980037084 0.467342 39 2 SH10650 10650 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 136 149 4273.077165 2124.890118 3198.983642 3.505012019 1.232791 39 3 SH6517 6517 snR46 snR46 76 93 32.882372 149.06766 90.975016 1.958922141 0.207973 39 4 SH19132 19132 YPL075W_16_412249_415357_INTRON_9_759 intron 28.840702 179.538989 28.840702 151.698287 90.2694945 1.95554101 -0.078372 39 5 SH10887 10887 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1321 1336 120.168561 297.175268 208.6719145 2.319464001 0.066533 39 6 SH18007 18007 YLR287C-A_12_713158_712537_INTRON_4_433 intron 31.142353 192.081574 31.142353 161.939221 96.540787 1.984710835 0.026151 39 7 SH4265 4265 telomerase RNA telomerase 361 378 29.104102 153.386536 91.245319 1.960210594 -0.068471 39 8 SH436 436 Asp1 tRNA 1 18 31.238018 165.403333 98.3206755 1.992644854 0.01038 39 9 SH11801 11801 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5891 5908 19328.60456 19515.08157 19421.84306 4.288290441 -0.334032 39 10 SH14009 14009 MT COB intronic 29.101766 209.840401 29.101766 181.738635 105.4202005 2.022923838 -0.217732 39 11 SH10075 10075 RUF6 RUF6 221 235 31.15063 170.297874 100.724252 2.003134051 -0.024486 39 12 SH6039 6039 snR37 snR37 111 127 29.002545 149.717112 89.3598285 1.951142327 -0.056156 39 13 SH16455 16455 YER074W-A_0_5_307649_INTRON_95_196 intron 28.966534 170.98194 28.966534 143.015406 85.99097 1.934452848 -0.023085 39 14 SH18861 18861 YNR053C_14_723108_721117_INTRON_811_1341 intron 31.054618 157.131032 31.054618 127.076414 79.065516 1.89798711 0.215598 39 15 SH13692 13692 MT ORF 5 (hypothetical) ORF5 / 3' 27.965545 163.034126 27.965545 136.068581 82.017063 1.913904213 -0.058347 39 16 SH3115 3115 Ser4 5' flank 31.219528 185.072057 108.1457925 2.034009628 -0.109153 39 17 SH12552 12552 MT_15S 5' 29.284366 180.222658 29.284366 151.938292 90.611329 1.9571825 -0.047971 39 18 SH2480 2480 Phe5 3' flank 46.56999 197.887448 122.228719 2.08717326 0.073904 39 19 SH10499 10499 RUF8 RUF8 421 442 29.754575 166.881574 98.3180745 1.992633365 -0.090908 39 20 SH3299 3299 Thr2 3' flank 27.855961 148.336859 88.09641 1.944958211 -0.133891 39 21 SH4684 4684 snR4 5' 28.095532 131.598171 79.8468515 1.902257796 -0.021392 39 22 SH5154 5154 snR13 5' 32.712762 180.229894 106.471328 2.027232671 -0.008446 39 23 SH952 952 Gly1 tRNA 11 28 32.919805 163.754806 98.3373055 1.992718304 0.118585 39 24 SH1358 1358 Ile3 3' flank 30.85468 161.706175 96.2804275 1.98353801 0.009958 39 25 SH17533 17533 YJL177W_10_90783_91654_INTRON_310_626 intron 30.966382 234.624002 30.966382 204.65762 117.812001 2.071189532 -0.288653 39 26 SH5588 5588 snR33 3' 31.046498 134.177061 82.6117795 1.917041977 0.172675 39 27 SH35 35 Ala1 tRNA + 3' flank 71 3' flank 28.860754 139.447681 84.1542175 1.925075886 -0.011102 39 28 SH17842 17842 YKR094C_11_618384_617630_INTRON_9_376 intron 31.147529 161.186321 31.147529 131.038792 81.0931605 1.908984227 0.197961 39 29 SH1599 1599 Leu4 3' flank 31.183242 187.494841 109.3390415 2.038775262 -0.132494 39 30 SH21594 21594 copy of SH6470 31.215487 170.910938 101.0632125 2.004593099 -0.024249 39 31 SH16715 16715 YGL031C_7_438393_437938_INTRON_1_456 intron 31.24649 225.479908 31.24649 195.233418 113.239954 2.053999684 -0.198315 39 32 SH21740 21740 copy of SH12550 29.020444 149.670537 89.3454905 1.951072637 -0.054615 39 33 SH10088 10088 RUF6 RUF6 286 303 31.30516 137.722246 84.513703 1.926927131 0.169826 39 34 SH1750 1750 Leu7 tRNA 46 58 89.575082 248.157301 168.8661915 2.227542709 0.125247 39 35 SH19583 19583 AEP2/ATP13 0.6 31.347715 173.006889 102.177302 2.009354431 -0.028731 39 36 SH1504 1504 Leu3 5' flank - tRNA9 9 35.88579 169.075211 102.4805005 2.010641238 0.210265 39 37 SH12713 12713 MT ORF 8 (hypothetical) ORF8 29.09264 154.335531 29.09264 126.242891 77.6677655 1.890240811 0.084764 39 38 SH10295 10295 RUF7 RUF7 86 105 31.34012 193.277507 112.3088135 2.050413839 -0.17774 39 39 SH6976 6976 snR60 5' 35.834699 161.940761 98.88773 1.995142408 0.281309 39 40 SH7016 7016 snR60 3' 118.462829 265.277475 191.870152 2.28300742 0.266268 39 41 SH11185 11185 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2811 2828 33.465221 141.991015 87.728118 1.943138813 0.283835 39 42 SH20419 20419 YGL030W spliced 33.384708 204.77224 119.078474 2.07583326 -0.217074 39 43 SH14961 14961 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 28.806035 204.915129 28.806035 177.109094 102.9575645 2.012658261 -0.210609 39 44 SH15750 15750 YCR031C_3_178212_177492_INTRON_8_314 intron 28.708062 168.92407 28.708062 141.216008 84.962035 1.929224906 -0.032095 39 45 SH10179 10179 RUF6 RUF6 741 757 30.827133 145.470094 88.1486135 1.945215486 0.09382 39 46 SH10899 10899 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1381 1398 35.153963 147.680923 91.417443 1.96102907 0.346304 39 47 SH11681 11681 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5291 5306 163.114059 323.483334 243.2986965 2.386139782 0.226411 39 48 SH7304 7304 snR66 snR66 11 28 65.992189 242.892866 154.4425275 2.1887669 -0.104232 39 49 SH9074 9074 snR14 / U4 RNA 5' - 3 -14 3 48.194444 172.799115 110.4967795 2.04334962 0.402278 39 50 SH1729 1729 Leu7 5' flank 74.833285 222.086926 148.4601055 2.171609765 0.185032 39 51 SH8071 8071 snoRNA cluster 2 snR61 384.79379 1380.134585 384.79379 996.340795 690.5672925 2.839206005 -0.677547 39 52 SH20373 20373 YER179W spliced 30.650543 190.549046 110.5997945 2.04375432 -0.180401 39 53 SH8417 8417 snoRNA cluster 5 snR190 28.518523 144.133358 28.518523 116.614835 72.566679 1.860737248 0.109518 39 54 SH11939 11939 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6581 6596 94.749186 290.646165 192.6976755 2.284876476 -0.126677 39 55 SH3933 3933 RNase MRP RNaseMRP 81 96 35.364065 161.218336 98.2912005 1.992514639 0.268334 39 56 SH12986 12986 MT COX1 COX1ai2 28.730411 183.79823 28.730411 156.067819 92.399115 1.965667812 -0.109328 39 57 SH3400 3400 Thr4 3' flank 28.766076 120.418283 74.5921795 1.872693297 0.100695 39 58 SH33 33 Ala1 tRNA 61 73 35.489351 163.565452 99.5274015 1.997942665 0.252863 39 59 SH18704 18704 YNL130C_14_381156_379555_INTRON_30_470 intron 29.869455 173.372862 29.869455 144.503407 87.186431 1.9404489 0.033496 39 60 SH7093 7093 snR63 5' 28.69399 176.718616 102.706303 2.011597097 -0.215652 39 61 SH12215 12215 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 41.953864 213.879807 41.953864 172.925943 107.4399035 2.03116561 0.312709 39 62 SH21507 21507 copy of SH2799 35.099403 159.84129 97.4703465 1.98887251 0.263006 39 63 SH6827 6827 snR52 snR52 41 60 28.283589 173.005803 100.644696 2.002790892 -0.225324 39 64 SH19223 19223 YPL090C_16_378390_377286_INTRON_7_400 5' exon 337.471094 984.921651 337.471094 648.450557 492.9608255 2.692812408 -0.131953 39 65 SH9739 9739 RUF4 RUF4 471 488 30.001419 130.421973 80.211696 1.904237699 0.12268 39 66 SH13564 13564 MT COX1 Exon 6 31.874102 191.288829 31.874102 160.414727 96.1444145 1.982924059 0.079177 39 67 SH17736 17736 YKL156W_11_158616_159214_INTRON_4_353 intron 29.449807 194.957687 29.449807 166.50788 97.9788435 1.991132309 -0.110458 39 68 SH17775 17775 YKL180W_11_109271_110131_INTRON_310_615 intron 29.176006 177.833739 29.176006 149.657733 89.4168695 1.951419461 -0.043413 39 69 SH349 349 Arg5 3' flank 75.061815 185.674711 130.368263 2.115171879 0.554709 39 70 SH10484 10484 RUF8 RUF8 346 365 30.76309 173.624805 102.1939475 2.009425175 -0.067546 39 71 SH9293 9293 RUF1 RUF1 41 59 28.504339 141.43629 84.9703145 1.929267226 -0.048308 39 72 SH1400 1400 Leu1 tRNA-intron/exon 71 87 84.991115 255.661491 170.326303 2.23128172 0.01822 39 73 SH5675 5675 snR34 snR34 296 313 28.267298 154.313877 91.2905875 1.960426002 -0.133897 39 74 SH18385 18385 YMR116C_13_500687_499455_INTRON_538_810 intron 30.254981 193.232769 30.254981 163.977788 97.1163845 1.987292506 -0.042076 39 75 SH8570 8570 snR19 / U1 RNA U1 346 358 32.280884 150.725754 91.503319 1.961436847 0.160698 39 76 SH2362 2362 Phe3 3' flank 34.340392 186.627363 110.4838775 2.043298908 -0.009138 39 77 SH17838 17838 YKR094C_11_618384_617630_INTRON_9_376 intron 30.297917 193.212931 30.297917 163.915014 97.1064655 1.987248147 -0.038823 39 78 SH20597 20597 YHR041C spliced 32.382818 164.611023 98.4969205 1.993422653 0.082541 39 79 SH13864 13864 MT COB intronic 29.353876 165.565758 29.353876 137.211882 83.282879 1.92055573 0.037175 39 80 SH17581 17581 YJL191W_10_73786_74610_INTRON_11_418 intron 30.402204 160.018592 30.402204 130.616388 80.509296 1.905846029 0.149468 39 81 SH8103 8103 snoRNA cluster 3; 5' 34.509067 226.390213 34.509067 192.881146 113.6951065 2.055741773 -0.063348 39 82 SH10055 10055 RUF6 RUF6 121 138 32.446451 174.441569 103.44401 2.014705348 0.027278 39 83 SH18404 18404 YMR125W_13_517538_520445_INTRON_26_347 intron 34.452507 181.012819 34.452507 147.560312 91.0064095 1.95907198 0.309455 39 84 SH19410 19410 YPR098C_16_729525_728944_INTRON_48_143 intron 34.377113 234.42383 34.377113 201.046717 117.711915 2.070820425 -0.156361 39 85 SH20608 20608 YHR077C spliced 40.377929 219.259859 129.818894 2.113337905 -0.247511 39 86 SH9650 9650 RUF4 RUF4 26 42 32.093048 150.547361 91.3202045 1.960566875 0.149547 39 87 SH15580 15580 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.909652 194.618359 29.909652 165.708707 97.8091795 1.990379616 -0.074406 39 88 SH11399 11399 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3881 3897 114.091408 226.787003 170.4392055 2.231569501 0.528841 39 89 SH8281 8281 snoRNA cluster4 intergenic 31.52129 212.60843 31.52129 182.08714 106.804215 2.028588392 -0.070381 39 90 SH3825 3825 RNaseP RNaseP 91 106 55.096033 212.059418 133.5777255 2.125734044 0.034422 39 91 SH19547 19547 CBP1 2.2 31.102974 194.512915 112.8079445 2.052339686 -0.197591 39 92 SH2111 2111 Met1 5' flank 28.965099 157.990145 93.477622 1.970707656 -0.102362 39 93 SH6974 6974 snR60 5' 34.642739 146.061521 90.35213 1.955938395 0.330121 39 94 SH8364 8364 snoRNA cluster4 3' 39.343863 250.985753 39.343863 212.64189 125.9928765 2.100345991 -0.193636 39 95 SH3938 3938 RNase MRP RNaseMRP 106 122 109.842303 297.957236 203.8997695 2.309416735 -0.028515 39 96 SH2150 2150 Met1 3' flank 36.25372 199.808419 118.0310695 2.071996342 -0.105302 39 97 SH17659 17659 YKL002W_11_437416_438182_INTRON_61_128 intron 28.518389 193.716239 28.518389 166.19785 97.3581195 1.988372177 -0.175645 39 98 SH17845 17845 YKR094C_11_618384_617630_INTRON_9_376 intron 28.507746 165.944042 28.507746 138.436296 83.472021 1.921540929 -0.031349 39 99 SH2263 2263 Phe2 5' flank 30.436489 168.270936 99.3537125 1.9971841 -0.055676 39 100 SH19234 19234 YPL090C_16_378390_377286_INTRON_7_400 intron 42.037809 245.996109 42.037809 204.9583 123.4980545 2.091660116 -0.069785 39 101 SH12763 12763 MT COX1 COX1ai1 35.31351 206.125834 35.31351 171.812324 103.562917 2.015204274 0.163908 39 102 SH11778 11778 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5776 5793 289.345703 410.69647 350.0210865 2.544094209 0.450183 39 103 SH18294 18294 YML073C_13_124172_123227_INTRON_16_430 intron 28.615092 190.40096 28.615092 162.785868 95.70048 1.980914116 -0.151816 39 104 SH7200 7200 snR64 snR64 66 83 32.541268 153.434616 92.987942 1.968426636 0.162941 40 2 SH8987 8987 snR17a / U3a U3a 221 237 38.111639 177.744623 107.928131 2.033134656 0.184896 40 3 SH21585 21585 copy of SH6042 30.91284 182.709396 106.811118 2.028616461 -0.110284 40 4 SH19953 19953 YBL050W spliced 1212.614759 1431.681112 1322.147936 3.121280051 0.197938 40 5 SH5056 5056 snR10 3' 29.03495 156.435431 92.7351905 1.967244568 -0.089352 40 6 SH15868 15868 YDL079C_4_314747_312950_INTRON_413_704 intron 31.215098 190.658352 31.215098 160.443254 95.829176 1.981497754 0.039941 40 7 SH873 873 Glu2 3' flank 31.263791 194.480581 112.872186 2.052586936 -0.191132 40 8 SH908 908 Glu3 tRNA 51 63 35.495278 164.373278 99.934278 1.999714479 0.24475 40 9 SH14894 14894 MT tRNA Ile 5' 29.150851 190.593286 29.150851 162.442435 95.796643 1.98135029 -0.111608 40 10 SH12733 12733 MT COX1 Exon1 29.101474 172.690679 29.101474 144.589205 86.8453395 1.938746517 -0.021825 40 11 SH16173 16173 YDR305C_4_1073479_1072737_INTRON_88_176 5' exon 29.033257 187.9129 29.033257 159.879643 94.45645 1.975231619 -0.107115 40 12 SH8100 8100 snoRNA cluster 3; 5' 56.224347 272.764906 56.224347 217.540559 136.882453 2.136347779 -0.004463 40 13 SH10096 10096 RUF6 RUF6 326 342 33.082503 146.891181 89.986842 1.954179011 0.23248 40 14 SH12541 12541 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.892505 182.257133 28.892505 154.364628 91.6285665 1.962030892 -0.088763 40 15 SH14379 14379 MT ORF9 and ORF10 (hypothetical) ORF10 28.930948 187.981443 28.930948 160.050495 94.4907215 1.975389165 -0.115306 40 16 SH1095 1095 Gly4 5' flank 29.034164 174.643583 101.8388735 2.007913587 -0.18162 40 17 SH16770 16770 YGL103W_7_310965_311925_INTRON_50_560 intron 48.215105 252.644275 48.215105 205.42917 126.8221375 2.103195069 0.011812 40 18 SH10089 10089 RUF6 RUF6 291 307 29.428434 148.181647 88.8050405 1.948437617 -0.017506 40 19 SH17562 17562 YJL189W_10_75932_76473_INTRON_7_392 intron 36.125809 214.646793 36.125809 179.520984 107.8233965 2.032713008 0.11709 40 20 SH3685 3685 Val3 5' flank 29.972856 183.539808 106.756332 2.028393644 -0.172617 40 21 SH7062 7062 snR62 3' 30.24511 137.408309 83.8267095 1.923382419 0.099053 40 22 SH14801 14801 "MT tRNAs (Lys, Arg1, Gly)" intergenic 30.489489 193.629329 30.489489 164.13984 97.3146645 1.98817829 -0.027169 40 23 SH17535 17535 YJL177W_10_90783_91654_INTRON_310_626 intron 1357.173919 3158.37215 1357.173919 1802.198231 1579.686075 3.19857079 -0.019127 40 24 SH2347 2347 Phe3 tRNA 61 75 7244.133179 6381.718239 6812.925709 3.833333653 0.17393 40 25 SH20211 20211 YDR059C spliced 62.375832 191.524524 126.950178 2.103633314 0.345184 40 26 SH19260 19260 YPL143W_16_282121_282969_INTRON_20_544 intron 28.814072 175.107715 28.814072 147.293643 88.0538575 1.944748386 -0.05717 40 27 SH16422 16422 YER074W_5_306319_307192_INTRON_4_469 5' exon 31.114496 217.188637 31.114496 187.074141 109.0943185 2.037802134 -0.131347 40 28 SH123 123 Arg1 5' flank - tRNA8 5' flank 8 33.41009 153.746561 93.5783255 1.97117527 0.210295 40 29 SH2343 2343 Phe3 tRNA-intron/exon 41 58 33.452388 146.624501 90.0384445 1.954427984 0.257027 40 30 SH13731 13731 MT COB Exon1 49.315513 260.159122 49.315513 211.843609 130.579561 2.115875204 -0.040745 40 31 SH6265 6265 snR42 snR42 106 122 31.275356 143.652759 87.4640575 1.941829621 0.133961 40 32 SH13273 13273 MT COX1 Exon 5a 30.184595 167.786554 30.184595 138.601959 84.393277 1.926307851 0.088094 40 33 SH20825 20825 YKR057W spliced 31.353239 159.418267 95.385753 1.979483512 0.054708 40 34 SH12669 12669 MT_15S 3' 47.283295 247.059847 47.283295 200.776552 124.0299235 2.093526476 0.050953 40 35 SH9776 9776 RUF4 RUF4 656 671 167.311375 374.236279 270.773827 2.432606683 -0.009022 40 36 SH21019 21019 YMR033W spliced 33.712362 183.821219 108.7667905 2.036496314 -0.005683 40 37 SH20058 20058 YBR255C-A spliced 29.184172 193.635128 111.40965 2.04692281 -0.276867 40 38 SH16831 16831 YGL178W_7_167356_170575_INTRON_4_643 intron 29.182533 159.01184 29.182533 130.829307 80.00592 1.903122124 0.061966 40 39 SH2740 2740 Pro5 tRNA 81 95 46.211849 180.525837 113.368843 2.054493714 0.277101 40 40 SH14449 14449 MT 21S rRNA 21S rRNA3 33.670957 219.499058 33.670957 186.828101 110.249529 2.042376743 -0.034535 40 41 SH10399 10399 RUF8 5' 31.355041 190.68362 111.0193305 2.045398604 -0.15437 40 42 SH18951 18951 YOL127W_15_80347_81189_INTRON_14_427 intron 31.28741 192.021026 31.28741 161.733616 96.510513 1.984574624 0.036129 40 43 SH1766 1766 Leu7 3' flank 31.201371 182.853713 107.027542 2.029495552 -0.093719 40 44 SH1092 1092 Gly4 5' flank 51.352948 218.536234 134.944591 2.130155481 -0.081273 40 45 SH10896 10896 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1366 1381 270.287376 506.787328 388.537352 2.589432776 0.012566 40 46 SH2507 2507 Pro1 tRNA 26 38 30.888326 159.858209 95.3732675 1.979426662 0.02153 40 47 SH16439 16439 YER074W_5_306319_307192_INTRON_4_469 intron 33.025512 223.634325 33.025512 191.608813 112.3171625 2.050446123 -0.100358 40 48 SH3524 3524 Tyr1 3' flank 30.746826 128.983166 79.864996 1.902356474 0.183013 40 49 SH20430 20430 YGL033W spliced 30.73128 166.104457 98.4178685 1.993073955 -0.024491 40 50 SH14216 14216 MT ATP9 ATP9 32.97886 215.099634 32.97886 183.120774 108.049817 2.033624036 -0.025593 40 51 SH2399 2399 Phe4 tRNA-intron/exon 46 60 33.050549 167.913699 100.482124 2.002088807 0.100513 40 52 SH5065 5065 snR11 5' 30.92221 164.007224 97.464717 1.988847426 -0.000003 40 53 SH2555 2555 Pro2 tRNA 11 28 33.27493 149.87344 91.574185 1.961773062 0.228234 40 54 SH7787 7787 snoRNA cluster1 intergenic/snR75 33.397266 185.711483 33.397266 153.314217 93.3557415 1.970141033 0.212438 40 55 SH7218 7218 snR64 3' 28.997172 152.188738 90.592955 1.957094426 -0.069759 40 56 SH13903 13903 MT COB Exon3 31.330432 210.588808 31.330432 180.258376 105.794404 2.024462696 -0.071479 40 57 SH1825 1825 Leu8 3' flank 31.379027 191.87281 111.6259185 2.047765045 -0.163945 40 58 SH8280 8280 snoRNA cluster4 intergenic 31.391009 184.51566 31.391009 154.124651 92.75783 1.96735058 0.084621 40 59 SH17571 17571 YJL189W_10_75932_76473_INTRON_7_392 intron/exon 33.625088 176.254676 33.625088 143.629588 88.627338 1.947567705 0.284431 40 60 SH2496 2496 Pro1 5' flank 31.287235 157.130889 94.209062 1.97409268 0.0621 40 61 SH8510 8510 snR19 / U1 RNA U1 46 65 28.917753 169.617038 99.2673955 1.996806627 -0.163281 40 62 SH2419 2419 Phe4 3' flank 30.99578 167.439902 99.217841 1.996589772 -0.016606 40 63 SH20133 20133 YDL083C spliced 33.003128 161.540141 97.2716345 1.987986214 0.137145 40 64 SH7747 7747 snoRNA cluster1 intergenic/snR76 30.529728 162.233405 30.529728 132.703677 81.6167025 1.911779044 0.145929 40 65 SH1496 1496 Leu3 5' flank 34.615878 168.944579 101.7802285 2.007663422 0.168409 40 66 SH5973 5973 snR36 snR36 321 338 32.111779 166.932495 99.522137 1.997919693 0.052601 40 67 SH16667 16667 YFR032C-A_6_223758_223245_INTRON_1_331 intron 33.927119 212.995581 33.927119 180.068462 106.9977905 2.02937481 0.03673 40 68 SH77 77 Ala2 21-33 21 33 31.469266 157.072061 94.2706635 1.974376564 0.074443 40 69 SH20510 20510 YGR029W spliced 33.273439 210.177695 121.725567 2.085381806 -0.276182 40 70 SH4188 4188 telomerase RNA 5' 28.832219 126.339935 77.586077 1.889783793 0.065634 40 71 SH6168 6168 snR40 5' 30.696791 164.114057 97.405424 1.988583141 -0.014342 40 72 SH2382 2382 Phe4 5' flank 30.532529 157.563559 94.048044 1.973349768 0.009199 40 73 SH3163 3163 Ser5 5' flank 28.374179 121.026462 74.7003205 1.873322465 0.068308 40 74 SH20161 20161 YDL130W spliced 34.453567 164.03353 99.2435485 1.996702284 0.201985 40 75 SH19925 19925 YBL018C spliced 28.299953 141.041704 84.6708285 1.927733809 -0.061287 40 76 SH7411 7411 snR69 5' 32.396818 133.464416 82.930617 1.918714897 0.26649 40 77 SH2070 2070 Lys4 tRNA 16 30 34.471032 156.540045 95.5055385 1.980028558 0.25044 40 78 SH2357 2357 Phe3 3' flank 30.405639 124.475681 77.44066 1.888969046 0.187233 40 79 SH4157 4157 SRP RNA 3' 34.528764 160.982858 97.755811 1.990142583 0.225134 40 80 SH2906 2906 Pro8 tRNA 51 67 182.808881 371.198201 277.003541 2.442485321 0.102808 40 81 SH19375 19375 YPR043W_16_654161_654842_INTRON_3_405 intron 69.549159 261.371852 69.549159 192.822693 131.185926 2.117887245 0.41432 40 82 SH18459 18459 YMR143W_13_551927_552902_INTRON_25_568 intron 32.459343 208.241855 32.459343 176.782512 104.6209275 2.019618566 0.014477 40 83 SH17780 17780 YKL180W_11_109271_110131_INTRON_310_615 intron 32.411048 194.409038 32.411048 162.99799 97.704519 1.989914651 0.094175 40 84 SH16974 16974 YGR034W_7_555923_556666_INTRON_20_496 intron 30.295492 167.4136 30.295492 138.118108 84.2068 1.925347164 0.098543 40 85 SH15979 15979 YDL136W_4_217600_218367_INTRON_4_408 intron 32.230312 204.774704 32.230312 173.544392 102.887352 2.01236199 0.020023 40 86 SH21669 21669 copy of SH9619 30.067885 149.404871 89.736378 1.952968536 0.020446 40 87 SH11631 11631 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5041 5058 31.924646 172.602678 102.263662 2.00972134 0.007738 40 88 SH8377 8377 snoRNA cluster 5 5' 31.730503 196.887007 31.730503 166.156504 98.9435035 1.995387284 0.035006 40 89 SH21937 21937 copy of SH19620 31.518706 195.57502 113.546863 2.05517514 -0.190874 40 90 SH21150 21150 YNL246W spliced 33.276503 167.403872 100.3401875 2.001474908 0.116339 40 91 SH18512 18512 YMR201C_13_667043_665844_INTRON_28_111 exon/intron 33.049726 213.285204 33.049726 181.235478 107.142602 2.029962189 -0.005559 40 92 SH1119 1119 Gly4 71-72 + 3' flank 71 29.914957 129.769519 79.842238 1.902232702 0.12051 40 93 SH2546 2546 Pro2 5' flank 34.600653 135.232287 84.91647 1.928991932 0.392588 40 94 SH18381 18381 YMR116C_13_500687_499455_INTRON_538_810 intron 32.512267 212.370406 32.512267 180.858139 106.685203 2.028104188 -0.021683 40 95 SH55 55 Ala2 5' flank 34.328518 179.663501 106.9960095 2.029367581 0.054619 40 96 SH21045 21045 YMR142C spliced 39.060355 199.483843 119.272099 2.076538862 -0.052003 40 97 SH4160 4160 SRP RNA 3' 36.126018 170.384444 103.255231 2.013912063 0.205241 40 98 SH19217 19217 YPL081W_16_404945_406039_INTRON_8_508 intron 70.835494 302.555182 70.835494 232.719688 151.777591 2.181207655 0.04315 40 99 SH12348 12348 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 38.037482 202.642785 38.037482 165.605303 101.8213925 2.007839032 0.315013 40 100 SH17019 17019 YGR148C_7_788173_787307_INTRON_1_392 intron 32.290944 187.145387 32.290944 155.854443 94.0726935 1.973463579 0.132768 40 101 SH2603 2603 Pro3 5' flank 32.321279 184.77586 108.5485695 2.035624105 -0.064904 40 102 SH5863 5863 snR35 snR35 501 518 32.359329 200.153925 116.256627 2.065417718 -0.198395 40 103 SH10419 10419 RUF8 RUF8 21 40 28.53234 161.572139 95.0522395 1.977962354 -0.151764 40 104 SH21041 21041 YMR133W spliced 48.067564 212.419128 130.243346 2.114755545 -0.064329 41 2 SH8171 8171 snoRNA cluster 3; snR70 30.922496 180.956448 30.922496 151.033952 90.978224 1.958937455 0.069824 41 3 SH9733 9733 RUF4 RUF4 441 457 31.032582 145.791745 88.4121635 1.946512018 0.105816 41 4 SH12740 12740 MT COX1 COX1ai1 31.13117 195.163811 31.13117 165.032641 98.0819055 1.991588895 0.006254 41 5 SH18807 18807 YNL301C_14_64561_63569_INTRON_113_544 intron/exon 556.082846 1005.65265 556.082846 450.569804 503.326325 2.701849645 1.084452 41 6 SH4497 4497 U3b (snR17b) U3b 41 60 37.60642 205.477368 121.541894 2.084726 -0.142418 41 7 SH18553 18553 YMR230W_13_732413_733140_INTRON_53_462 intron 31.300876 221.203502 31.300876 190.902626 111.101751 2.045720904 -0.158378 41 8 SH21473 21473 copy of SH1243 31.295669 179.044367 105.170018 2.021891948 -0.066688 41 9 SH10572 10572 RUF8 RUF8 786 802 29.150572 151.057207 90.1038895 1.954743539 -0.052763 41 10 SH16871 16871 YGL187C_7_150529_149708_INTRON_1_342 intron 31.184043 212.553638 31.184043 182.369595 106.776819 2.028476979 -0.092064 41 11 SH7298 7298 snR66 5' 29.000817 197.19971 113.1002635 2.053463617 -0.307182 41 12 SH11667 11667 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5221 5234 35.180539 178.838295 107.009417 2.029421998 0.091757 41 13 SH3661 3661 Val2 tRNA 46 58 35.100608 175.639568 105.370088 2.022717343 0.119487 41 14 SH1933 1933 Lys1 3' flank 28.825251 134.301456 81.5633535 1.911495074 0.015609 41 15 SH16160 16160 YDR129C_4_715372_713333_INTRON_22_132 intron 28.858101 186.152274 28.858101 158.294173 93.576137 1.971165113 -0.111599 41 16 SH6529 6529 snR46 snR46 136 156 31.049164 187.452375 109.2507695 2.038424505 -0.137273 41 17 SH3020 3020 Ser2 tRNA 61 73 75.617196 196.054935 135.8360655 2.133015094 0.448113 41 18 SH3126 3126 Ser4 tRNA 36 53 29.358664 180.735166 105.046915 2.021383303 -0.195677 41 19 SH5161 5161 snR13 5' 29.629089 130.938335 80.283712 1.904627444 0.0933 41 20 SH2242 2242 Phe1 86-72 + 3' flank 86 105 29.916835 128.067773 78.992304 1.897584781 0.13093 41 21 SH5657 5657 snR34 snR34 206 224 36.740712 165.774636 101.257674 2.005427947 0.271736 41 22 SH1753 1753 Leu7 tRNA 61 75 30.450339 184.889616 107.6699775 2.032094622 -0.150516 41 23 SH7631 7631 snR189 3' 36.198278 164.03219 100.115234 2.000500167 0.271749 41 24 SH6210 6210 snR40 3' 30.828733 138.004912 84.4168225 1.926429001 0.135929 41 25 SH820 820 Glu1 3' flank 30.952638 152.692288 91.822463 1.962948938 0.063 41 26 SH7193 7193 snR64 snR64 31 47 62.524322 248.457463 155.4908925 2.191704956 -0.196326 41 27 SH2190 2190 Met2 3' flank 31.106759 139.297649 85.202204 1.930450829 0.147572 41 28 SH5001 5001 snR10 snR10 36 51 31.156485 176.189398 103.6729415 2.015665421 -0.058689 41 29 SH16074 16074 YDR025W_4_491510_492319_INTRON_46_384 5' exon 34.577813 229.40149 34.577813 195.823677 115.200745 2.061455288 -0.094915 41 30 SH3582 3582 Val1 5' flank 31.239998 173.375737 102.3078675 2.009909032 -0.037329 41 31 SH1817 1817 Leu8 3' flank 31.282781 139.550982 85.4168815 1.931543712 0.157921 41 32 SH19171 19171 YPL079W_16_406631_407534_INTRON_12_432 intron 31.328491 184.880736 31.328491 154.552245 92.940368 1.968204388 0.07824 41 33 SH8957 8957 snR17a / U3a U3a 71 88 33.64146 185.396655 109.5190575 2.039489698 -0.022606 41 34 SH696 696 Gln3 tRNA 11 28 29.156192 150.623999 89.8900955 1.953711842 -0.050037 41 35 SH13580 13580 MT COX1 Exon 6 33.737926 219.659012 33.737926 186.921086 110.329506 2.042691674 -0.032994 41 36 SH9591 9591 RUF3 RUF3 341 358 40.607657 173.784275 107.195966 2.030178442 0.278851 41 37 SH18892 18892 YOL120C_15_94401_93394_INTRON_113_559 exon/intron 31.525565 167.673706 31.525565 137.148141 84.336853 1.926017391 0.187857 41 38 SH16308 16308 YDR450W_4_1359912_1360787_INTRON_48_482 intron 29.261825 186.80398 29.261825 158.542155 93.90199 1.972674796 -0.084035 41 39 SH3296 3296 Thr2 3' flank 29.258766 123.851532 76.555149 1.883974406 0.112323 41 40 SH20866 20866 YLR093C spliced 46.32695 217.535536 131.931243 2.120347654 -0.141999 41 41 SH8412 8412 snoRNA cluster 5 snR190 29.204918 191.356518 29.204918 163.1516 96.178259 1.983076911 -0.111292 41 42 SH14492 14492 MT 21S rRNA 21S rRNA3 29.151207 164.544448 29.151207 136.393241 82.772224 1.917884624 0.027247 41 43 SH7212 7212 snR64 3' 31.34049 150.03133 90.68591 1.957539815 0.103084 41 44 SH20823 20823 YKR057W spliced 31.248374 173.112137 102.1802555 2.009366984 -0.035282 41 45 SH19470 19470 ADH1 31.149401 161.54951 96.3494555 1.983849265 0.029022 41 46 SH10317 10317 RUF7 RUF7 196 212 33.297293 149.154652 91.2259725 1.960118502 0.233523 41 47 SH12557 12557 MT_15S MT_15S 42.176537 235.668776 42.176537 194.492239 118.334388 2.073110969 0.051972 41 48 SH8024 8024 snoRNA cluster 2 snR55 30.939708 167.0898 30.939708 137.150092 84.0449 1.924511365 0.148339 41 49 SH423 423 Asp1 5' flank 33.173255 193.644458 113.4088565 2.054646971 -0.112844 41 50 SH3608 3608 Val1 tRNA 36 50 61.28103 184.201648 122.741339 2.088990857 0.415906 41 51 SH4961 4961 snR9 3' 28.831575 133.852211 81.341893 1.910314275 0.018682 41 52 SH12561 12561 MT_15S MT_15S 28.940595 169.674561 28.940595 141.733966 85.3372805 1.931138799 -0.017957 41 53 SH48 48 Ala1 3' flank 29.064236 150.783457 89.9238465 1.953874876 -0.057449 41 54 SH15080 15080 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.1873 204.753247 29.1873 176.565947 102.8766235 2.012316702 -0.182908 41 55 SH5051 5051 snR10 3' 227.910396 384.67949 306.294943 2.486139827 0.287188 41 56 SH110 110 Arg1 5' flank 29.378301 145.670113 87.524207 1.942128185 -0.00769 41 57 SH5495 5495 snR32 snR32 136 153 34.002981 127.687858 80.8454195 1.907655419 0.40288 41 58 SH15149 15149 MT tRNA Thr1 reverse complement tRNA / 3' 31.723473 199.456056 31.723473 168.732583 100.228028 2.000989186 0.01896 41 59 SH13707 13707 MT tRNAGlu (and 5' processing site for COB) tRNA 31.685692 202.589192 31.685692 171.9035 101.794596 2.007724723 -0.002183 41 60 SH9734 9734 RUF4 RUF4 446 462 31.597688 152.894295 92.2459915 1.964947503 0.104733 41 61 SH11031 11031 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2041 2054 11588.32362 4786.5141 8187.418862 3.913147009 1.23961 41 62 SH13414 13414 MT COX1 intronic 29.013073 162.579968 29.013073 134.566895 81.789984 1.912700123 0.027749 41 63 SH17349 17349 YIL018W_9_316766_317930_INTRON_5_404 intron 31.031973 197.764008 31.031973 167.732035 99.382004 1.99730775 -0.016196 41 64 SH10587 10587 RUF8 RUF8 861 876 31.867151 155.124244 93.4956975 1.970791626 0.110626 41 65 SH9446 9446 RUF2 RUF2 71 83 30.455143 151.208602 90.8318725 1.958238267 0.037283 41 66 SH20289 20289 YDR471W spliced 32.311782 151.661391 91.9865865 1.963724503 0.157671 41 67 SH16316 16316 YDR471W_4_1401759_1402553_INTRON_32_415 intron 31.967626 250.120892 31.967626 219.153266 125.560446 2.09885285 -0.395582 41 68 SH16599 16599 YFL034C-A_6_64931_64242_INTRON_13_333 intron 33.764971 242.047866 33.764971 209.282895 121.523933 2.084661817 -0.256515 41 69 SH12067 12067 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7221 7239 31.325466 200.912604 116.119035 2.064903418 -0.243677 41 70 SH4989 4989 snR10 5' 31.053257 127.773428 79.4133425 1.899893476 0.211243 41 71 SH949 949 Gly1 5' flank - tRNA12 12 66.269137 230.809373 148.539255 2.171841241 0.003031 41 72 SH6262 6262 snR42 snR42 91 107 30.655886 161.103918 95.879902 1.981727581 -0.000434 41 73 SH18989 18989 YOR096W_15_505793_506766_INTRON_145_545 3' exon 59.437589 283.48628 59.437589 225.048691 142.24314 2.153031331 -0.033693 41 74 SH6103 6103 snR37 3' 120.987349 254.321014 187.6541815 2.273358246 0.366981 41 75 SH15391 15391 YBL040C_2_142830_142074_INTRON_23_119 intron 32.496962 201.554814 32.496962 170.057852 101.277407 2.005512574 0.056045 41 76 SH10608 10608 RUF8 3' 30.447417 144.11473 87.2810735 1.940920079 0.075681 41 77 SH3422 3422 Trp1 5' flank 28.411808 137.338928 82.875368 1.91842547 -0.032247 41 78 SH9991 9991 RUF5-1 761-775 + 3' 761 30.479074 165.833938 98.156506 1.991919091 -0.03824 41 79 SH21620 21620 copy of SH7515 30.488561 185.333495 107.911028 2.03306583 -0.150608 41 80 SH18052 18052 YLR333C_12_796335_795573_INTRON_1_423 intron 34.594112 210.488629 34.594112 176.894517 105.7443145 2.024257026 0.090061 41 81 SH2144 2144 Met1 3' flank 32.521324 179.632742 106.077033 2.025621364 -0.009877 41 82 SH18847 18847 YNL312W_14_48286_49215_INTRON_8_115 intron 32.486279 197.076743 32.486279 165.590464 99.0383715 1.995803491 0.082477 41 83 SH9395 9395 RUF1 3' 34.479823 185.351721 109.915772 2.041060015 0.00729 41 84 SH20038 20038 YBR186W spliced 34.398346 166.785362 100.591854 2.002562813 0.182083 41 85 SH2354 2354 Phe3 3' flank 30.217507 122.850261 76.533884 1.883853754 0.185361 41 86 SH21818 21818 copy of SH15703 32.120329 193.319481 112.719905 2.052000614 -0.148649 41 87 SH17586 17586 YJL191W_10_73786_74610_INTRON_11_418 intron 31.958226 203.75227 31.958226 172.794044 102.376135 2.01019873 0.008577 41 88 SH5232 5232 snR30 snR30 11 25 33.775228 151.894524 92.834876 1.967711162 0.242928 41 89 SH19913 19913 YAL003W spliced 31.560528 170.223643 100.8920855 2.003857099 0.000395 41 90 SH16750 16750 YGL076C_7_365994_364333_INTRON_565_1032 intron 29.363967 183.31595 29.363967 154.951983 92.157975 1.964532923 -0.058249 41 91 SH11371 11371 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3741 3758 84.486248 210.774205 147.6302265 2.169175286 0.395548 41 92 SH400 400 Asn1 3' flank 27.019613 110.868638 68.9441255 1.838497267 0.040961 41 93 SH12267 12267 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.683116 213.009737 32.683116 181.326621 107.0048685 2.029403538 -0.01977 41 94 SH17585 17585 YJL191W_10_73786_74610_INTRON_11_418 intron 30.591709 195.854792 30.591709 166.263083 98.427396 1.993115996 -0.033971 41 95 SH6857 6857 snR56 5' 30.47528 126.215128 78.345204 1.894012416 0.181236 41 96 SH14117 14117 MT COB intronic 30.391664 184.554494 30.391664 155.16283 92.777247 1.967441481 0.01204 41 97 SH139 139 Arg1 71-73 + 3' flank 71 3' flank 32.254781 147.747504 90.0011425 1.954248023 0.175187 41 98 SH15957 15957 YDL130W_4_229906_230527_INTRON_115_415 intron 32.224241 214.347982 32.224241 183.123741 107.673991 2.032110811 -0.05335 41 99 SH4559 4559 U3b (snR17b) U3b 351 367 31.256769 137.739014 84.4978915 1.926845872 0.166473 41 100 SH12460 12460 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 62137.05111 83396.04343 62137.05111 21259.99232 41698.52172 4.620120659 1.044656 41 101 SH15107 15107 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 34.163615 163.535603 34.163615 130.371988 82.2678015 1.915229892 0.395859 41 102 SH19128 19128 YPL075W_16_412249_415357_INTRON_9_759 intron 55.471368 231.305081 55.471368 176.833713 116.1525405 2.065028713 0.438146 41 103 SH10206 10206 RUF6 RUF6 876 896 30.374836 176.837752 103.606294 2.015386139 -0.109919 41 104 SH18884 18884 YOL047C_15_242745_241612_INTRON_244_306 exon/intron 30.405819 176.456855 30.405819 147.051036 88.7284275 1.948062785 0.056505 42 2 SH12515 12515 MT_ORF6 + ORF7 (hypothetical) ORF6/7 31.060964 204.15595 31.060964 174.094986 102.577975 2.011054121 -0.05228 42 3 SH19504 19504 YPT1 33.253416 193.382241 113.3178285 2.054298244 -0.107666 42 4 SH17536 17536 YJL177W_10_90783_91654_INTRON_310_626 intron 29.106058 196.332453 29.106058 168.226395 98.6662265 1.994168519 -0.143142 42 5 SH7892 7892 snoRNA cluster1 intergenic 39.728032 239.592475 39.728032 200.864443 120.2962375 2.080252044 -0.057593 42 6 SH17102 17102 YHL001W_8_104270_105084_INTRON_130_527 intron 29.194919 183.038691 29.194919 154.843772 92.0193455 1.96387914 -0.069665 42 7 SH13949 13949 MT COB Cytbi3 31.312758 203.257101 31.312758 172.944343 102.1285505 2.009147168 -0.030449 42 8 SH5151 5151 snR13 5' 181.603844 315.060246 248.332045 2.395032765 0.38969 42 9 SH17526 17526 YJL136C_10_156971_156248_INTRON_25_484 intron 29.128919 172.786489 29.128919 144.65757 86.8932445 1.938986014 -0.020208 42 10 SH7506 7506 snR71 3' 29.051258 152.237988 90.644623 1.957342047 -0.066153 42 11 SH13544 13544 MT COX1 intronic 33.140678 206.652206 33.140678 174.511528 103.826103 2.016306554 0.06153 42 12 SH5348 5348 snR30 591-601+3' 591 35.123154 190.453225 112.7881895 2.052263625 -0.023281 42 13 SH5597 5597 snR34 5' 28.800146 141.788872 85.294509 1.930921074 -0.028505 42 14 SH14344 14344 MT VAR1 includes 5’ processing site VAR1/3' 28.774376 179.479524 28.774376 151.705148 90.239762 1.955397941 -0.083187 42 15 SH66 66 Ala2 5' flank 32.967584 163.909396 98.43849 1.993164943 0.120337 42 16 SH2562 2562 Pro2 tRNA-intron 46 63 61.37719 236.938269 149.1577295 2.173645764 -0.114081 42 17 SH5412 5412 snR31 snR31 126 142 65.972266 200.342874 133.15757 2.124365861 0.292072 42 18 SH11898 11898 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6376 6391 36138.47442 29518.68637 32828.58039 4.516252103 -0.179866 42 19 SH14142 14142 MT COB intronic 32.787319 235.793157 32.787319 204.005838 118.3965785 2.073339152 -0.221682 42 20 SH9515 9515 RUF3 5' 32.028241 175.484239 103.75624 2.016014225 -0.003028 42 21 SH1049 1049 Gly3 5' flank 34.508198 193.087871 113.7980345 2.056134761 -0.065699 42 22 SH13454 13454 MT COX1 intronic 28.214645 166.692953 28.214645 139.478308 83.8464765 1.923484817 -0.058959 42 23 SH12617 12617 MT_15S MT_15S 30.622898 208.150801 30.622898 178.527903 104.5754005 2.019429537 -0.104378 42 24 SH12884 12884 MT COX1 COX1ai1 30.793159 212.336672 30.793159 182.543513 106.668336 2.02803552 -0.116613 42 25 SH20025 20025 YBR119W spliced 33.153514 168.698704 100.926109 2.00400353 0.101589 42 26 SH19534 19534 CBP1 1.2 42.22371 222.141844 132.182777 2.121174872 -0.248486 42 27 SH14689 14689 MT 21S rRNA 3' 28.84088 187.620839 28.84088 159.779959 94.3104195 1.974559677 -0.120407 42 28 SH5345 5345 snR30 snR30 576 593 31.135298 178.610595 104.8729465 2.02066347 -0.073828 42 29 SH19053 19053 YOR234C_15_779404_778554_INTRON_20_546 intron 35.683013 216.088288 35.683013 181.405275 108.544144 2.035606398 0.084697 42 30 SH19222 19222 YPL090C_16_378390_377286_INTRON_7_400 5' exon 35.732259 224.374795 35.732259 189.642536 112.6873975 2.051875349 -0.001826 42 31 SH9124 9124 snR14 / U4 RNA 3' 33.525575 203.734817 118.630196 2.074195248 -0.203034 42 32 SH16263 16263 YDR424C_4_1319830_1319376_INTRON_26_121 intron 31.318232 181.736106 31.318232 151.417874 91.368053 1.96079437 0.094158 42 33 SH9581 9581 RUF3 RUF3 291 307 31.372404 150.674562 91.023483 1.95915345 0.101731 42 34 SH15740 15740 YCR028C-A_3_173432_172942_INTRON_243_325 intron 29.160763 169.525526 29.160763 141.364763 85.262763 1.930759402 0.000037 42 35 SH5570 5570 snR33 snR33 136 153 31.481899 138.16933 84.8256145 1.928527014 0.179149 42 36 SH13764 13764 MT COB intronic 29.254612 198.493297 29.254612 170.238685 99.7466485 1.998898312 -0.14221 42 37 SH4626 4626 snR3 snR3 46 63 31.5669 158.139333 94.8531165 1.977051605 0.075386 42 38 SH8467 8467 snoRNA cluster 5 3' 31.591764 170.148286 31.591764 139.556522 85.574143 1.932342558 0.178287 42 39 SH20325 20325 YER056C-A spliced 44.168099 203.59771 123.8829045 2.093011379 -0.023751 42 40 SH352 352 Arg5 3' flank 1894.566042 2889.650337 2392.10819 3.378780818 -0.319641 42 41 SH18497 18497 YMR194W_13_651144_651909_INTRON_17_479 intron 31.569158 250.147917 31.569158 219.578759 125.5739585 2.098899585 -0.40868 42 42 SH1581 1581 Leu4 tRNA 76 92 1232.442401 1591.796827 1412.119614 3.149871485 0.051069 42 43 SH19968 19968 YBL072C spliced 109.054606 301.000108 205.027357 2.311811813 -0.054883 42 44 SH8736 8736 LSR1 / U2 RNA U2 321 340 29.117298 130.484556 79.800927 1.902007936 0.059309 42 45 SH14373 14373 MT ORF9 and ORF10 (hypothetical) ORF10 33.555233 191.144062 33.555233 158.588829 96.072031 1.982596972 0.186893 42 46 SH1177 1177 His1 3' flank 35.72575 173.567364 104.646557 2.019724944 0.160662 42 47 SH12575 12575 MT_15S MT_15S 40.163972 229.326422 40.163972 190.16245 115.163211 2.061313765 0.074078 42 48 SH19013 19013 YOR182C_15_678792_678190_INTRON_4_414 intron 31.134001 209.942253 31.134001 179.808252 105.4711265 2.023133585 -0.080696 42 49 SH7377 7377 snR68 snR68 106 123 34.523907 187.914465 111.219186 2.046179712 -0.014351 42 50 SH20971 20971 YML034W spliced 31.212783 173.354055 102.283419 2.009805237 -0.038831 42 51 SH13693 13693 MT ORF 5 (hypothetical) 3' 29.05662 190.573697 29.05662 162.517077 95.7868485 1.981305885 -0.1187 42 52 SH3517 3517 Tyr1 3' flank 31.446692 189.096269 110.2714805 2.042463205 -0.136767 42 53 SH1843 1843 Leu9 5' flank 31.592093 172.150249 101.871171 2.008051298 -0.009171 42 54 SH9632 9632 RUF4 5' 34.024438 183.888231 108.9563345 2.037252484 0.00474 42 55 SH6639 6639 snR48 snR48 21 40 31.856806 139.70382 85.780313 1.933387627 0.19477 42 56 SH4671 4671 snR3 3' 34.253242 194.131596 114.192419 2.057637273 -0.082686 42 57 SH9146 9146 snR7 U5 RNA U5 1 17 34.306316 175.588906 104.947611 2.020972557 0.092555 42 58 SH16761 16761 YGL087C_7_346902_346404_INTRON_12_96 intron 34.308694 226.593087 34.308694 193.284393 113.7965435 2.056129071 -0.072017 42 59 SH4056 4056 SRP RNA SRP RNA 171 190 31.950026 185.737691 108.8438585 2.036803929 -0.087504 42 60 SH20835 20835 YKR095W-A spliced 31.847157 195.222335 113.534746 2.055128793 -0.175409 42 61 SH14382 14382 MT ORF9 and ORF10 (hypothetical) 3' 29.404409 155.838046 29.404409 127.433637 78.419023 1.894421427 0.098906 42 62 SH16176 16176 YDR305C_4_1073479_1072737_INTRON_88_176 intron 33.752909 216.199554 33.752909 183.446645 108.599777 2.035828933 -0.000801 42 63 SH18297 18297 YML073C_13_124172_123227_INTRON_16_430 intron 31.225105 212.127473 31.225105 181.902368 106.5637365 2.02760944 -0.086998 42 64 SH20196 20196 YDR005C spliced 30.931955 179.929184 105.4305695 2.022966552 -0.09355 42 65 SH9317 9317 RUF1 RUF1 161 178 30.612918 162.157547 96.3852325 1.984010499 -0.008625 42 66 SH15158 15158 MT tRNA Val 5' 30.280936 181.18186 30.280936 151.900924 91.09093 1.959475136 0.021677 42 67 SH7945 7945 snoRNA cluster1 3' 29.949223 181.920098 29.949223 152.970875 91.460049 1.96123143 -0.006868 42 68 SH5770 5770 snR35 snR35 36 53 31.768938 157.12824 94.448589 1.975195474 0.093822 42 69 SH7426 7426 snR69 snR69 31 47 37.814089 223.926753 130.870421 2.1168415 -0.335605 42 70 SH3121 3121 Ser4 tRNA 11 25 1867.864878 2341.780715 2104.822797 3.323215539 -0.009705 42 71 SH7953 7953 snoRNA cluster 2 5' 33.034707 207.327245 33.034707 175.292538 104.1636225 2.017716075 0.050158 42 72 SH2585 2585 Pro2 3' flank 30.775347 146.54118 88.6582635 1.947719221 0.084388 42 73 SH9397 9397 RUF1 3' 28.591678 131.203193 79.8974355 1.90253284 0.017101 42 74 SH1762 1762 Leu7 3' flank 30.585381 188.080542 109.3329615 2.038751112 -0.160947 42 75 SH11652 11652 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5146 5161 57.400427 195.202938 126.3016825 2.101409136 0.243434 42 76 SH6968 6968 snR60 5' 100.908643 276.477576 188.6931095 2.275756041 0.030184 42 77 SH12671 12671 MT_15S 3' 34.674757 238.164066 34.674757 204.489309 119.582033 2.077665933 -0.18724 42 78 SH18245 18245 YML034W_13_209525_212155_INTRON_1921_2046 5' exon 30.562339 194.014361 30.562339 164.452022 97.5071805 1.989036599 -0.024638 42 79 SH3329 3329 Thr3 5' flank - tRNA8 8 32.617974 147.078586 89.84828 1.953509768 0.2021 42 80 SH20040 20040 YBR189W spliced 61.514178 220.135854 140.825016 2.148679809 0.039997 42 81 SH19262 19262 YPL143W_16_282121_282969_INTRON_20_544 intron 32.570961 212.476533 32.570961 180.905572 106.7382665 2.028320145 -0.019965 42 82 SH13352 13352 MT COX1 intronic 28.422893 166.49755 28.422893 139.074657 83.748775 1.922978463 -0.041212 42 83 SH10216 10216 RUF6 RUF6 926 945 30.418724 145.622518 88.020621 1.944584428 0.065293 42 84 SH11189 11189 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2831 2849 32.391202 157.067092 94.729147 1.976483627 0.130688 42 85 SH2004 2004 Lys3 5' flank 32.293707 187.410673 109.85219 2.040808719 -0.089818 42 86 SH12816 12816 MT COX1 COX1ai1 30.140856 190.978214 30.140856 161.837358 95.989107 1.982221951 -0.039276 42 87 SH19767 19767 Negative Control 33.031054 185.312819 109.1719365 2.038111014 -0.043778 42 88 SH15309 15309 YAL001C_1_151163_147591_INTRON_71_160 3'exon 29.833855 207.389963 29.833855 178.556108 104.1949815 2.017846802 -0.153338 42 89 SH1696 1696 Leu6 tRNA 46 58 35.642248 175.784786 105.713517 2.024130522 0.136437 42 90 SH15139 15139 MT tRNA Thr1 reverse complement 5' 29.449567 186.742699 29.449567 158.293132 93.8713495 1.972533061 -0.069489 42 91 SH14722 14722 MT tRNA cys; tRNA his tRNA Cys 35.164169 176.865073 35.164169 142.700904 88.9325365 1.949060679 0.381699 42 92 SH8951 8951 snR17a / U3a U3a 41 56 38.85772 197.681705 118.2697125 2.072873541 -0.034386 42 93 SH6625 6625 snR48 5' 34.726034 128.064823 81.3954285 1.910600014 0.444209 42 94 SH17224 17224 YHR041C_8_189855_189122_INTRON_15_115 3' exon 73.500796 313.795744 73.500796 241.294948 157.397872 2.196998856 0.001752 42 95 SH8284 8284 snoRNA cluster4 intergenic 33.436056 218.351984 33.436056 185.915928 109.675992 2.040111571 -0.034662 42 96 SH11232 11232 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3046 3067 11008.07489 12772.05115 11890.06302 4.075184156 -0.388791 42 97 SH489 489 Asp2 tRNA 6 23 458.863361 524.683414 491.7733875 2.691765023 0.596003 42 98 SH9861 9861 RUF5-1 RUF5-1 111 131 30.320036 192.556853 111.4384445 2.047035041 -0.211076 42 99 SH16803 16803 YGL137W_7_249872_252741_INTRON_19_218 intron 32.206119 225.759364 32.206119 194.553245 113.379682 2.054535235 -0.156189 42 100 SH5448 5448 snR32 5' 36.028391 207.863553 121.945972 2.08616746 -0.19579 42 101 SH15454 15454 YBL087C_2_60732_59815_INTRON_43_546 intron 34.111662 224.096184 34.111662 190.984522 112.548092 2.051338137 -0.056087 42 102 SH4217 4217 telomerase RNA telomerase 121 135 32.203398 186.019879 109.1116385 2.037871078 -0.080604 42 103 SH11724 11724 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5506 5521 30.296984 149.355183 89.8260835 1.953402464 0.036468 42 104 SH19940 19940 YBL027W spliced 30.314832 169.479829 99.8973305 1.999553883 -0.070436 43 2 SH4759 4759 snR5 5' 33.310259 167.87901 100.5946345 2.002574817 0.115355 43 3 SH10763 10763 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 701 719 29.128628 145.432876 87.280752 1.940918479 -0.024395 43 4 SH7220 7220 snR64 3' 31.284213 159.852717 95.568465 1.980314611 0.047822 43 5 SH12178 12178 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7776 7798 29.198349 155.091908 92.1451285 1.96447238 -0.070718 43 6 SH20955 20955 YML024W spliced 52.510253 208.383715 130.446984 2.115434042 0.038603 43 7 SH16519 16519 YER131W_5_423587_424307_INTRON_1_361 5' exon 29.193599 178.901786 29.193599 150.708187 89.950893 1.954005479 -0.047828 43 8 SH5473 5473 snR32 snR32 26 43 31.260081 162.437913 96.848997 1.986095127 0.03008 43 9 SH4575 4575 U3b (snR17b) U3b 431 443 39.606182 188.279117 113.9426495 2.056686314 0.086711 43 10 SH21710 21710 copy of SH11290 29.007134 132.130374 80.568754 1.906166647 0.041557 43 11 SH12251 12251 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.001604 207.851919 31.001604 177.850315 104.4259595 2.018808474 -0.077538 43 12 SH21351 21351 YPR132W spliced 30.909342 176.362862 103.636102 2.01551107 -0.074577 43 13 SH3028 3028 Ser2 3' flank 32.922125 147.667078 90.2946015 1.955661786 0.218127 43 14 SH9725 9725 RUF4 RUF4 401 416 32.903224 170.664779 101.7840015 2.007679521 0.07565 43 15 SH729 729 Gln4 5' flank 57.992461 224.084135 141.038298 2.149337058 -0.04399 43 16 SH15846 15846 YDL075W_4_322225_322987_INTRON_58_478 intron 28.90298 213.263219 28.90298 185.360239 107.1316095 2.02991763 -0.250592 43 17 SH413 413 Asn1 3' flank 31.17624 186.779934 108.978087 2.03733918 -0.126316 43 18 SH13583 13583 MT COX1 Exon 6 29.306866 162.164404 29.306866 133.857538 81.582202 1.911595423 0.053087 43 19 SH6793 6793 snR50 3' 29.573166 123.70793 76.640548 1.884458601 0.135267 43 20 SH9891 9891 RUF5-1 RUF5-1 261 280 29.854141 143.214038 86.5340895 1.937187228 0.0394 43 21 SH13690 13690 MT ORF 5 (hypothetical) ORF5 30.127541 168.856904 30.127541 139.729363 84.928452 1.929053208 0.077796 43 22 SH3222 3222 Thr1 5' flank 30.375014 180.348218 105.361616 2.022682423 -0.129879 43 23 SH15831 15831 YDL075W_4_322225_322987_INTRON_58_478 intron 32.792789 226.80917 32.792789 195.016381 113.904585 2.056541206 -0.138576 43 24 SH21663 21663 copy of SH9193 28.534121 142.468485 85.501303 1.931972733 -0.051776 43 25 SH14132 14132 MT COB intronic 28.652787 186.290466 28.652787 158.637679 93.645233 1.971485675 -0.128173 43 26 SH3525 3525 Tyr1 3' flank 30.974913 171.354118 101.1645155 2.005028206 -0.041343 43 27 SH2140 2140 Met1 3' flank 31.044376 138.328776 84.686576 1.927814574 0.148783 43 28 SH2300 2300 Phe2 3' flank 33.342624 141.398937 87.3707805 1.941366215 0.279604 43 29 SH9454 9454 RUF2 RUF2 111 128 31.142564 131.159617 81.1510905 1.90929436 0.196907 43 30 SH1549 1549 Leu4 5' flank 31.185855 152.426847 91.806351 1.962872726 0.079987 43 31 SH10922 10922 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1496 1515 1696.694618 1980.686429 1838.690524 3.264508638 0.125509 43 32 SH5894 5894 snR36 5' 31.284653 180.822153 106.053403 2.025524609 -0.077385 43 33 SH19383 19383 YPR043W_16_654161_654842_INTRON_3_405 intron 31.343052 221.508695 31.343052 191.165643 111.2543475 2.046316991 -0.159088 43 34 SH17412 17412 YIL106W_9_166412_167441_INTRON_21_105 intron 31.405411 174.695275 31.405411 144.289864 87.8476375 1.943730086 0.138988 43 35 SH3456 3456 Trp1 3' flank 29.197559 159.672861 94.43521 1.97513395 -0.094355 43 36 SH17338 17338 YIL018W_9_316766_317930_INTRON_5_404 intron 254.62122 769.730698 254.62122 516.109478 385.365349 2.585872662 -0.089428 43 37 SH14937 14937 MT tRNA Asn 3' 29.297857 165.683109 29.297857 137.385252 83.3415545 1.920861597 0.032168 43 38 SH14191 14191 MT COB Exon6 29.333132 176.022504 29.333132 147.689372 88.511252 1.946998484 -0.021659 43 39 SH4505 4505 U3b (snR17b) U3b 81 98 33.921552 182.581848 108.2517 2.034434725 0.013143 43 40 SH6812 6812 snR52 5' 33.929049 174.225816 104.0774325 2.01735657 0.092459 43 41 SH5593 5593 snR33 3' 33.917043 161.962715 97.939879 1.990959563 0.185553 43 42 SH12016 12016 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6966 6989 29.323444 152.976658 91.150051 1.959756916 -0.050721 43 43 SH8668 8668 LSR1 / U2 RNA 5' 29.279131 143.604653 86.441892 1.936724264 -0.003683 43 44 SH18707 18707 YNL130C_14_381156_379555_INTRON_30_470 intron 29.222524 156.070814 29.222524 127.84829 78.535407 1.895065499 0.083453 43 45 SH7813 7813 snoRNA cluster1 intergenic 31.428292 221.57547 31.428292 191.147178 111.287735 2.046447303 -0.155672 43 46 SH2289 2289 Phe2 tRNA-intron/exon 41 58 31.369027 159.763011 95.566019 1.980303495 0.053454 43 47 SH13234 13234 MT COX1 COX1-ai4 29.070142 178.608459 29.070142 150.538317 89.8042295 1.953296791 -0.05571 43 48 SH20716 20716 YJL041W spliced 33.583371 183.864011 108.723691 2.036324188 -0.010668 43 49 SH4642 4642 snR3 snR3 126 141 31.355923 190.752303 111.054113 2.045534648 -0.154944 43 50 SH9464 9464 RUF2 RUF2 161 180 29.164719 183.20542 106.1850695 2.026063456 -0.22186 43 51 SH15710 15710 YBR220C_2_663261_662457_INTRON_302_722 intron 86.481944 327.827757 86.481944 242.345813 164.4138785 2.215938474 0.139111 43 52 SH7328 7328 snR66 3' 38.547838 179.73168 109.139759 2.03798299 0.168735 43 53 SH8406 8406 snoRNA cluster 5 snR190 30.68489 181.94885 30.68489 152.26396 91.474425 1.961299688 0.047245 43 54 SH8093 8093 snoRNA cluster 2 3' 31.975729 195.6594 31.975729 164.683671 98.3297 1.992684714 0.058444 43 55 SH13426 13426 MT COX1 intronic 32.095984 178.711687 32.095984 147.615703 89.8558435 1.953546325 0.165667 43 56 SH13687 13687 MT ORF 5 (hypothetical) ORF5 32.181162 231.464609 32.181162 200.283447 116.2323045 2.065326849 -0.2061 43 57 SH18139 18139 YLR406C_12_931752_931062_INTRON_58_406 intron 36.875327 256.73447 36.875327 220.859143 128.867235 2.11014251 -0.31917 43 58 SH4021 4021 SRP RNA 5' - 13 13 32.213587 162.870059 97.541823 1.989190868 0.083549 43 59 SH5389 5389 snR31 snR31 11 27 32.151144 168.915557 100.5333505 2.002310157 0.042893 43 60 SH17858 17858 YKR095W-A_11_625432_625839_INTRON_39_113 3' exon 36.658829 219.10634 36.658829 183.447511 110.05317 2.041602557 0.088619 43 61 SH1955 1955 Lys2 5' flank 29.560973 148.614289 89.087631 1.94981741 -0.010542 43 62 SH13481 13481 MT COX1 intronic 29.350637 167.47303 29.350637 139.122393 84.236515 1.925500391 0.026166 43 63 SH9488 9488 RUF2 3' 51.779518 152.556211 102.1678645 2.009314316 0.730073 43 64 SH20945 20945 YLR426W spliced 31.051161 156.031439 93.5413 1.971003401 0.05207 43 65 SH21291 21291 YPL175W spliced 32.937025 175.780821 104.358923 2.018529588 0.041917 43 66 SH11035 11035 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2061 2074 30.379292 167.266608 98.82295 1.994857814 -0.05311 43 67 SH5909 5909 snR36 snR36 1 17 36.551911 195.211707 115.881809 2.064015266 -0.048817 43 68 SH13842 13842 MT COB Cytbi2 29.723235 191.824678 29.723235 163.101443 96.412339 1.984132619 -0.074534 43 69 SH328 328 Arg5 5' flank 29.431327 165.539376 97.4853515 1.988939362 -0.107035 43 70 SH6969 6969 snR60 5' 35.498689 189.486282 112.4924855 2.051123513 -0.004671 43 71 SH2624 2624 Pro3 tRNA 71 83 735.614372 827.41923 781.516801 2.892938319 0.438788 43 72 SH10925 10925 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1511 1528 16754.99654 14672.15922 15713.57788 4.196275082 -0.065608 43 73 SH3533 3533 Tyr2 5' flank 30.770822 146.113912 88.442367 1.946660357 0.086448 43 74 SH10800 10800 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS/18S 886 904 36.911123 150.474329 93.692726 1.971705875 0.418446 43 75 SH3032 3032 Ser2 3' flank 34.804197 175.316341 105.060269 2.021438508 0.112436 43 76 SH13826 13826 MT COB Cytbi2 47.220842 255.061047 47.220842 208.840205 128.0305235 2.107313521 -0.038481 43 77 SH3595 3595 Val1 5' flank 30.661774 148.403009 89.5323915 1.951980185 0.066487 43 78 SH8199 8199 snoRNA cluster 3; intergenic 32.723527 203.961351 32.723527 172.237824 102.4806755 2.010641979 0.056091 43 79 SH6452 6452 snR45 snR45 106 120 34.773347 163.279105 99.026226 1.995750228 0.223939 43 80 SH12628 12628 MT_15S MT_15S 28.554525 163.727538 28.554525 136.173013 82.363769 1.915736212 -0.01505 43 81 SH13215 13215 MT COX1 COX1-ai4 28.516537 177.794794 28.516537 150.278257 89.397397 1.951324874 -0.094664 43 82 SH20711 20711 YJL041W spliced 28.46885 138.464916 83.466883 1.921514195 -0.034386 43 83 SH6806 6806 snR52 5' 37.649682 177.657779 107.6537305 2.032029084 0.177332 43 84 SH16990 16990 YGR118W_7_726968_727725_INTRON_66_385 intron 28.346513 187.266102 28.346513 159.919589 94.133051 1.973742135 -0.156996 43 85 SH5059 5059 snR10 3' 30.30737 158.885315 94.5963425 1.975874345 -0.012929 43 86 SH653 653 Gln2 tRNA 51 63 48.553533 194.958271 121.755902 2.085490022 0.133963 43 87 SH8819 8819 LSR1 / U2 RNA U2 736 752 30.078503 139.858117 84.96831 1.92925698 0.073648 43 88 SH13818 13818 MT COB Cytbi2 29.929793 202.807975 29.929793 173.878182 101.9039875 2.008191178 -0.120363 43 89 SH703 703 Gln3 tRNA 46 58 45.829455 176.252041 111.040748 2.045482379 0.326866 43 90 SH15575 15575 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.577128 170.818976 29.577128 142.241848 85.909488 1.934041131 0.025075 43 91 SH13534 13534 MT COX1 intronic 32.358121 220.413378 32.358121 189.055257 110.706689 2.044173862 -0.102175 43 92 SH6906 6906 snR56 3' 29.202495 171.820992 100.5117435 2.002216806 -0.154258 43 93 SH17633 17633 YJR094W-A_10_608000_608553_INTRON_3_277 intron 34.900671 222.923584 34.900671 189.022913 111.961792 2.049069841 -0.011358 43 94 SH2155 2155 Met2 5' flank 36.664231 187.368627 112.016429 2.049281724 0.042662 43 95 SH8683 8683 LSR1 / U2 RNA U2 56 73 33.585736 193.722116 113.653926 2.055584442 -0.098717 43 96 SH18745 18745 YNL162W_14_331319_332151_INTRON_5_516 intron 30.560266 201.836202 30.560266 172.275936 101.418101 2.006115474 -0.071988 43 97 SH1885 1885 Leu9 3' flank 30.465441 144.359434 87.4124375 1.941573231 0.075535 43 98 SH2072 2072 Lys4 tRNA-exon/intron 26 41 32.312459 143.559983 87.936221 1.944167798 0.202186 43 99 SH19458 19458 CYC1 34.173367 170.044874 102.1091205 2.009064535 0.142042 43 100 SH4673 4673 snR4 5' 32.211815 168.902426 100.5571205 2.002412829 0.046496 43 101 SH18958 18958 YOL127W_15_80347_81189_INTRON_14_427 intron 34.103464 223.974493 34.103464 190.871029 112.4872465 2.051103286 -0.055372 43 102 SH21489 21489 copy of SH2037 30.251852 158.618733 94.4352925 1.97513433 -0.015374 43 103 SH1988 1988 Lys2 3' flank 1390.69556 829.537944 1110.116752 3.045368656 1.2447 43 104 SH21560 21560 copy of SH4990 30.243627 149.432712 89.8381695 1.953460894 0.03239 44 2 SH8732 8732 LSR1 / U2 RNA U2 301 318 33.442537 155.449203 94.44587 1.975182972 0.20092 44 3 SH8574 8574 snR19 / U1 RNA U1 366 380 87.002751 279.387047 183.194899 2.262913377 -0.132476 44 4 SH7817 7817 snoRNA cluster1 intergenic 29.226931 199.668546 29.226931 171.441615 100.334273 2.001449308 -0.150449 44 5 SH17139 17139 YHR010W_8_126513_127484_INTRON_32_592 intron 31.340311 178.775518 31.340311 148.435207 89.887759 1.953700553 0.111737 44 6 SH1244 1244 Ile2 5' flank 35.547716 187.383169 111.4654425 2.047140244 0.020613 44 7 SH14719 14719 MT tRNA cys; tRNA his tRNA Cys 27.066533 171.091237 27.066533 145.024704 86.0456185 1.934728761 -0.176841 44 8 SH11992 11992 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6846 6863 31.220434 159.1733 95.196867 1.978622656 0.047203 44 9 SH18312 18312 YML073C_13_124172_123227_INTRON_16_430 intron 29.045202 163.706127 29.045202 135.660925 82.3530635 1.915679759 0.02377 44 10 SH8305 8305 snoRNA cluster4 intergenic 33.144442 215.079768 33.144442 182.935326 108.039884 2.033584109 -0.017884 44 11 SH6423 6423 snR45 5' 28.876556 146.865051 87.8708035 1.943844598 -0.050337 44 12 SH12366 12366 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.804824 169.703203 28.804824 141.898379 85.3516015 1.931211674 -0.028765 44 13 SH19714 19714 Negative Control 60.022291 261.497146 160.7597185 2.206177237 -0.335119 44 14 SH5103 5103 snR11 snR11 116 132 57.936997 221.952682 139.9448395 2.145956888 -0.024392 44 15 SH1989 1989 Lys2 3' flank 5044.69169 3278.998462 4161.845076 3.61928591 0.763201 44 16 SH11663 11663 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5201 5216 37.310541 158.65284 97.9816905 1.991144928 0.364271 44 17 SH5937 5937 snR36 snR36 141 153 29.124243 154.930315 92.027279 1.963916581 -0.075147 44 18 SH5106 5106 snR11 snR11 131 148 29.350505 142.798859 86.074682 1.934875427 0.00583 44 19 SH19461 19461 CYC1 40.306571 180.315891 110.311231 2.042619731 0.193231 44 20 SH2851 2851 Pro7 tRNA-intron/exon 61 75 51.494796 209.098713 130.2967545 2.114933598 0.017649 44 21 SH4573 4573 U3b (snR17b) U3b 421 436 278.988078 411.972253 345.4801655 2.538423119 0.402207 44 22 SH8422 8422 snoRNA cluster 5 snR190 95.508882 366.913101 95.508882 272.404219 183.9565505 2.264715257 0.005249 44 23 SH11389 11389 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3831 3848 39079.3152 27571.45419 33325.3847 4.522775171 0.030011 44 24 SH6669 6669 snR48 3' 44.035597 221.342593 132.689095 2.122835232 -0.213676 44 25 SH18011 18011 YLR287C-A_12_713158_712537_INTRON_4_433 intron 33.05807 209.260265 33.05807 177.202195 105.1301325 2.021727212 0.032721 44 26 SH11351 11351 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3641 3656 999.186971 1214.979309 1107.08314 3.044180237 0.209162 44 27 SH1703 1703 Leu6 81-84 + 3' flank 81 30.990542 140.279067 85.6348045 1.932650311 0.134217 44 28 SH12820 12820 MT COX1 COX1ai1 33.284192 229.281322 33.284192 196.99713 115.140661 2.061228718 -0.13781 44 29 SH2254 2254 Phe1 3' flank 31.087536 189.396624 110.24208 2.042347399 -0.153206 44 30 SH19326 19326 YPL218W_16_138697_139408_INTRON_29_167 intron 31.130603 167.488037 31.130603 137.357434 84.2440185 1.925539075 0.160116 44 31 SH1285 1285 Ile2 tRNA 121 133 69.611578 220.216966 144.914272 2.161111159 0.140484 44 32 SH6630 6630 snR48 5' 35.742275 135.031456 85.3868655 1.931391071 0.461159 44 33 SH11585 11585 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4811 4824 31892.13735 31758.42838 31825.28286 4.502772272 -0.4582 44 34 SH1490 1490 Leu3 5' flank 31.358654 167.646713 99.5026835 1.997834793 0.003898 44 35 SH20242 20242 YDR367W spliced 40.513931 196.092451 118.303191 2.072996459 0.00911 44 36 SH2540 2540 Pro2 5' flank 33.768822 168.00084 100.884831 2.003825871 0.140177 44 37 SH10450 10450 RUF8 RUF8 176 192 33.833417 200.601834 117.2176255 2.06899292 -0.162816 44 38 SH13241 13241 MT COX1 COX1-ai4 31.605062 216.552155 31.605062 185.947093 108.7760775 2.036533394 -0.10241 44 39 SH8703 8703 LSR1 / U2 RNA U2 156 171 31.641843 141.088806 86.3653245 1.936339409 0.172728 44 40 SH12750 12750 MT COX1 COX1ai1 31.663299 179.253387 31.663299 148.590088 90.1266935 1.954853438 0.13217 44 41 SH13517 13517 MT COX1 intronic 33.954115 234.087139 33.954115 201.133024 117.5435695 2.070198875 -0.166056 44 42 SH9084 9084 snR14 / U4 RNA U4 36 52 43.096136 205.489809 124.2929725 2.094446574 -0.060177 44 43 SH14390 14390 MT 21S rRNA 5' 29.344861 168.127013 29.344861 139.782152 84.5635065 1.927182983 0.022065 44 44 SH7518 7518 snR79 5' 29.307368 142.259184 85.783276 1.933402628 0.005683 44 45 SH12693 12693 MT ORF 8 (hypothetical) 5' 29.266312 174.32445 29.266312 146.058138 87.662225 1.94281249 -0.017807 44 46 SH21258 21258 YPL079W spliced 49.734225 230.997963 140.366094 2.147262215 -0.225182 44 47 SH16232 16232 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 31.485672 208.246228 31.485672 177.760556 104.623114 2.019627642 -0.048062 44 48 SH4793 4793 snR5 snR5 136 158 29.225623 123.427001 76.326312 1.882674278 0.112838 44 49 SH19789 19789 Negative Control 31.545712 183.628589 107.5871505 2.031760405 -0.083489 44 50 SH13594 13594 MT ATP8/AAP1 5' 29.35105 174.933121 29.35105 146.582071 87.9665605 1.944317611 -0.014508 44 51 SH6533 6533 snR46 snR46 156 172 34.042953 160.752626 97.3977895 1.9885491 0.2001 44 52 SH11969 11969 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6731 6751 22923.33589 16867.43326 19895.38458 4.298752338 0.11876 44 53 SH243 243 Arg3 71-72 + 3' flank 71 3' flank 29.728086 131.354402 80.541244 1.906018333 0.097853 44 54 SH4441 4441 telomerase RNA telomerase 1241 1260 29.854504 133.517332 81.685918 1.912147194 0.094062 44 55 SH368 368 Asn1 5' flank 32.286054 194.167754 113.226904 2.053949632 -0.149872 44 56 SH16828 16828 YGL178W_7_167356_170575_INTRON_4_643 intron 32.360108 226.216373 32.360108 194.856265 113.6081865 2.055409627 -0.153101 44 57 SH16458 16458 YER074W-A_0_5_307649_INTRON_95_196 3' exon 37.066091 246.609028 37.066091 210.542937 123.804514 2.09273648 -0.206758 44 58 SH15953 15953 YDL130W_4_229906_230527_INTRON_115_415 exon/intron 32.366696 209.549218 32.366696 178.182522 105.274609 2.022323637 -0.001908 44 59 SH7455 7455 snR69 3' 32.290075 164.786878 98.5384765 1.993605843 0.076095 44 60 SH13487 13487 MT COX1 intronic 32.156975 197.07414 32.156975 165.917165 99.03707 1.995797783 0.061428 44 61 SH10351 10351 RUF7 RUF7 366 385 29.661673 140.98732 85.3244965 1.931073734 0.03799 44 62 SH2909 2909 Pro8 tRNA 66 78 201.796457 428.303096 315.0497765 2.498379176 -0.038918 44 63 SH14120 14120 MT COB intronic 31.438836 209.259393 31.438836 178.820557 105.1296965 2.021725411 -0.056885 44 64 SH17806 17806 YKL190W_11_82949_83552_INTRON_53_128 3' exon 40.112259 242.982093 40.112259 203.869834 121.9910465 2.086327957 -0.085755 44 65 SH2479 2479 Phe5 3' flank 37.447932 176.770195 107.1090635 2.029826222 0.184439 44 66 SH8224 8224 snoRNA cluster 3; snR51/3' 30.433878 187.519047 30.433878 158.085169 94.2595235 1.97432524 -0.000194 44 67 SH13103 13103 MT COX1 COX1ai3 32.270151 212.764253 32.270151 181.494102 106.8821265 2.028905086 -0.03656 44 68 SH16342 16342 YDR500C_4_1450856_1450201_INTRON_8_396 intron 31.932073 183.68895 31.932073 152.756877 92.344475 1.965410917 0.127308 44 69 SH17626 17626 YJR094W-A_10_608000_608553_INTRON_3_277 intron 29.498198 200.273627 29.498198 171.775429 100.6368135 2.002756877 -0.135155 44 70 SH3624 3624 Val1 3' flank 29.253335 167.509847 98.381591 1.992913842 -0.12921 44 71 SH4816 4816 snR5 3' 33.250115 179.345758 106.2979365 2.026524834 0.01937 44 72 SH6638 6638 snR48 snR48 16 35 37.258686 158.595198 97.926942 1.990902193 0.363218 44 73 SH20281 20281 YDR450W spliced 30.882668 163.5485 97.215584 1.987735889 0.00045 44 74 SH71 71 Ala2 5' flank - tRNA6 5' flank 6 104.877446 262.296463 183.5869545 2.263841817 0.168411 44 75 SH18325 18325 YML094W_13_82275_82849_INTRON_17_99 5' exon 37.019854 230.916331 37.019854 194.896477 115.9581655 2.064301336 -0.036298 44 76 SH10008 10008 RUF5-1 3' 34.933091 194.710061 114.821576 2.060023504 -0.075262 44 77 SH9387 9387 RUF1 RUF1 511 528 30.779997 132.101111 81.440554 1.910840719 0.16667 44 78 SH14320 14320 MT VAR1 includes 5’ processing site VAR1 30.768746 207.858037 30.768746 178.089291 104.4290185 2.018821196 -0.092997 44 79 SH14933 14933 MT tRNA Asn tRNA 30.743027 202.170717 30.743027 172.42769 101.5853585 2.006831118 -0.061736 44 80 SH16867 16867 YGL187C_7_150529_149708_INTRON_1_342 intron 41.054538 217.959057 41.054538 177.904519 109.4795285 2.039332918 0.235561 44 81 SH21540 21540 copy of SH4150 36.844321 189.598137 113.221229 2.053927865 0.020366 44 82 SH17773 17773 YKL180W_11_109271_110131_INTRON_310_615 intron 30.584806 202.720512 30.584806 173.135706 101.860256 2.008004763 -0.075545 44 83 SH21191 21191 YOL120C spliced 34.630051 152.482814 93.5564325 1.971073653 0.285724 44 84 SH3463 3463 Trp1 3' flank 34.549023 190.77246 112.6607415 2.051772605 -0.038951 44 85 SH1963 1963 Lys2 tRNA 16 28 34.460228 177.506665 105.9834465 2.025238038 0.079587 44 86 SH8069 8069 snoRNA cluster 2 snR61 36.400105 220.194375 36.400105 184.79427 110.5971875 2.043744083 0.067678 44 87 SH18048 18048 YLR333C_12_796335_795573_INTRON_1_423 intron 31.187279 211.666237 31.187279 181.478958 106.3331185 2.026668551 -0.086896 44 88 SH14564 14564 MT 21S rRNA 21S rRNA3 34.093959 207.118503 34.093959 174.024544 104.0592515 2.017280698 0.100218 44 89 SH12309 12309 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.913494 230.084045 31.913494 199.170551 115.5420225 2.062739965 -0.206703 44 90 SH19286 19286 YPL143W_16_282121_282969_INTRON_20_544 3' exon 39.767092 238.134953 39.767092 199.367861 119.5674765 2.077613063 -0.039912 44 91 SH7293 7293 snR66 5' 29.56806 154.114912 91.841486 1.963038902 -0.039486 44 92 SH7124 7124 snR63 snR63 126 143 31.376693 148.575834 89.9762635 1.954127954 0.113378 44 93 SH5651 5651 snR34 snR34 176 195 169.767891 337.123365 253.445628 2.403884804 0.194704 44 94 SH8903 8903 LSR1 / U2 RNA U2 1156 1168 40.845826 159.63203 100.238928 2.001036413 0.462335 44 95 SH19881 19881 Negative Control 66.144895 212.482204 139.3135495 2.143993358 0.172427 44 96 SH14406 14406 MT 21S rRNA 21S rRNA3 30.744525 209.508353 30.744525 179.763828 105.2541765 2.022239338 -0.103978 44 97 SH8712 8712 LSR1 / U2 RNA U2 201 218 30.625118 139.644035 85.1345765 1.93010598 0.112772 44 98 SH18024 18024 YLR306W_12_744151_744851_INTRON_4_137 intron 32.451326 187.579781 32.451326 156.128455 94.2898905 1.974465131 0.140245 44 99 SH5082 5082 snR11 snR11 11 28 38.140851 202.82021 120.4805305 2.080916871 -0.104205 44 100 SH12788 12788 MT COX1 COX1ai1 32.283137 225.916375 32.283137 194.633238 113.4581875 2.054835841 -0.154021 44 101 SH8666 8666 LSR1 / U2 RNA 5' 28.385808 129.952895 79.1693515 1.898557088 0.010175 44 102 SH3588 3588 Val1 5' flank 32.178094 149.037546 90.60782 1.957165682 0.163204 44 103 SH9182 9182 snR7 U5 RNA U5 181 197 43.706649 153.095473 98.401061 1.992999781 0.606938 44 104 SH9547 9547 RUF3 RUF3 121 138 32.125137 174.379234 103.2521855 2.013899253 0.009037 45 2 SH5136 5136 snR11 3' 31.435687 181.327608 106.3816475 2.026866712 -0.071218 45 3 SH21241 21241 YOR312C spliced 52.79136 223.959866 138.375613 2.141059558 -0.114114 45 4 SH3211 3211 Thr1 5' flank 33.525111 203.739384 118.6322475 2.074202758 -0.203092 45 5 SH16030 16030 YDL191W_4_117665_118518_INTRON_4_494 intron 41.973868 246.341912 41.973868 205.368044 123.670956 2.092267718 -0.075262 45 6 SH18208 18208 YML024W_13_225889_226697_INTRON_4_401 3' exon 41.89896 250.821639 41.89896 209.922679 125.9108195 2.100063051 -0.1261 45 7 SH18013 18013 YLR287C-A_12_713158_712537_INTRON_4_433 intron 29.15008 172.336006 29.15008 144.185926 86.668003 1.93785879 -0.016134 45 8 SH1720 1720 Leu6 3' flank 33.282837 136.672032 84.9774345 1.929303615 0.303423 45 9 SH12967 12967 MT COX1 COX1ai2 29.00288 166.122533 29.00288 138.119653 83.5612665 1.922005014 0.006701 45 10 SH20605 20605 YHR077C spliced 58.265601 235.089972 146.6777865 2.166364347 -0.14029 45 11 SH15228 15228 MT COX3 cox3 26.771669 154.468921 26.771669 128.697252 77.7344605 1.890613589 -0.102185 45 12 SH10850 10850 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1136 1156 62.206505 193.066059 127.636282 2.105974145 0.326074 45 13 SH19406 19406 YPR098C_16_729525_728944_INTRON_48_143 5' exon 26.711282 165.404988 26.711282 139.693706 83.202494 1.920136344 -0.174778 45 14 SH1331 1331 Ile3 tRNA-exon/intron 36 52 32.979523 144.350772 88.6651475 1.947752941 0.240143 45 15 SH989 989 Gly2 5' flank 75.036634 228.224651 151.6306425 2.180786975 0.131953 45 16 SH4964 4964 snR9 3' 29.036818 119.786047 74.4114325 1.871639665 0.124324 45 17 SH11355 11355 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3661 3674 94.057113 244.670338 169.3637255 2.228820398 0.19829 45 18 SH11669 11669 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5231 5246 59.306283 235.729284 147.5177835 2.168844378 -0.131478 45 19 SH17727 17727 YKL156W_11_158616_159214_INTRON_4_353 intron 38.263675 245.159417 38.263675 207.895742 123.0797085 2.090186459 -0.158759 45 20 SH5526 5526 snR33 5' 32.087331 202.443185 117.265258 2.069169363 -0.227697 45 21 SH3769 3769 Val4 71-73 + 3' flank 71 27.98063 126.755612 77.368121 1.888562049 0.001252 45 22 SH14815 14815 "MT tRNAs (Lys, Arg1, Gly)" tRNA / intergenic 102.024824 369.951496 102.024824 268.926672 185.475748 2.268287131 0.093839 45 23 SH2702 2702 Pro4 3' flank 34.940987 166.47782 100.7094035 2.003070024 0.204427 45 24 SH941 941 Gly1 5' flank 30.668741 147.178698 88.9237195 1.94901762 0.07367 45 25 SH8771 8771 LSR1 / U2 RNA U2 496 508 32.997794 176.510895 104.7543445 2.020172044 0.037131 45 26 SH7512 7512 snR79 5' 35.314795 189.317085 112.31594 2.050441396 -0.0064 45 27 SH4054 4054 SRP RNA SRP RNA 161 180 30.920201 145.922469 88.421335 1.946557068 0.09756 45 28 SH6063 6063 snR37 snR37 231 250 33.20648 157.896506 95.551493 1.980237477 0.171807 45 29 SH16037 16037 YDL191W_4_117665_118518_INTRON_4_494 intron 31.014496 214.262259 31.014496 184.247763 107.6311295 2.031937898 -0.112666 45 30 SH15265 15265 MT 9S rRNA 9S 31.05804 205.765469 31.05804 175.707429 103.3827345 2.014448015 -0.061822 45 31 SH13003 13003 MT COX1 COX1ai2 32.228508 217.241441 32.228508 186.012933 109.1207205 2.037907225 -0.079607 45 32 SH11211 11211 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2941 2954 53.721787 211.288842 132.5053145 2.122233297 0.023856 45 33 SH6903 6903 snR56 3' 31.223826 161.301522 96.262674 1.983457921 0.035044 45 34 SH6209 6209 snR40 3' 31.29396 118.777909 75.0359345 1.875269296 0.285289 45 35 SH1112 1112 Gly4 tRNA 36 48 4375.451662 2810.734821 3593.093242 3.555468487 0.822015 45 36 SH3445 3445 Trp1 tRNA 56 73 33.711566 203.169824 118.440695 2.073500947 -0.193071 45 37 SH17009 17009 YGR148C_7_788173_787307_INTRON_1_392 intron 33.785225 205.643602 33.785225 172.858377 103.321801 2.014191968 0.100666 45 38 SH7773 7773 snoRNA cluster1 intergenic 40.697096 211.352764 40.697096 171.655668 106.176382 2.026027923 0.307249 45 39 SH19725 19725 Negative Control 31.619582 183.675076 107.647329 2.032003258 -0.081114 45 40 SH19119 19119 YPL031C_16_493033_492014_INTRON_18_119 intron 31.655284 215.471987 31.655284 184.816703 108.2359935 2.034371708 -0.090218 45 41 SH11596 11596 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4866 4883 165.263347 389.756809 277.510078 2.443278759 -0.095179 45 42 SH9424 9424 RUF2 5' 33.968932 130.045642 82.007287 1.913852445 0.386029 45 43 SH2204 2204 Met2 3' flank 29.388514 134.644091 82.0163025 1.913900186 0.054381 45 44 SH7478 7478 snR71 snR71 6 23 54.566585 207.554946 131.0607655 2.1174727 0.073771 45 45 SH2795 2795 Pro6 tRNA-intron/exon 66 78 159.388902 331.989719 245.6893105 2.390386262 0.154587 45 46 SH20065 20065 YBR230C spliced 31.618405 177.990054 104.8042295 2.020378809 -0.041509 45 47 SH13336 13336 MT COX1 COX1-ai5a 29.340164 158.727693 29.340164 130.387529 79.8638465 1.902350223 0.075947 45 48 SH8757 8757 LSR1 / U2 RNA U2 426 443 38.507189 199.74381 119.1254995 2.076004735 -0.063539 45 49 SH12624 12624 MT_15S MT_15S 29.42458 174.878284 29.42458 146.453704 87.939142 1.944182224 -0.008556 45 50 SH1604 1604 Leu4 3' flank 31.805956 138.998497 85.4022265 1.931469193 0.195555 45 51 SH4790 4790 snR5 snR5 121 140 31.927309 161.81357 96.8704395 1.98619127 0.073474 45 52 SH18329 18329 YML094W_13_82275_82849_INTRON_17_99 intron 37.852439 210.653835 37.852439 173.801396 105.8269175 2.024596146 0.227657 45 53 SH8853 8853 LSR1 / U2 RNA U2 906 922 407.297226 820.761756 614.029491 2.78818923 -0.289168 45 54 SH5039 5039 snR10 snR10 226 244 32.327557 198.259242 115.2933995 2.061804445 -0.183522 45 55 SH14454 14454 MT 21S rRNA 21S rRNA3 30.086086 210.931636 30.086086 181.84555 105.965818 2.025165795 -0.156146 45 56 SH8940 8940 snR17a / U3a 5' - 3 -14 3 32.483875 143.612604 88.0482395 1.944720677 0.212869 45 57 SH8158 8158 snoRNA cluster 3; snR70 32.497734 166.873232 32.497734 135.375498 83.936616 1.923951456 0.261604 45 58 SH8485 8485 snR19 / U1 RNA 5' 32.461267 162.568428 97.5148475 1.989070746 0.099751 45 59 SH17681 17681 YKL006W_11_431544_432358_INTRON_130_527 intron 32.370959 213.02612 32.370959 181.655161 107.01306 2.029436783 -0.034321 45 60 SH19464 19464 CYC1 32.22469 157.188476 94.706583 1.976380168 0.120269 45 61 SH2951 2951 Ser1 5' flank - tRNA5 5 32.022618 191.234015 111.6283165 2.047774375 -0.133996 45 62 SH8952 8952 snR17a / U3a U3a 46 65 34.062039 186.098377 110.080208 2.041709242 -0.014098 45 63 SH3119 3119 Ser4 tRNA 1 13 54292.5487 28457.08575 41374.81723 4.616736088 0.406743 45 64 SH5715 5715 snR34 snR34 496 513 33.389931 159.603404 96.4966675 1.984512315 0.171182 45 65 SH394 394 Asn1 51-66 51 66 92.469095 254.770137 173.619616 2.239598791 0.103869 45 66 SH10211 10211 RUF6 RUF6 901 915 32.649044 171.451333 102.0501885 2.008813811 0.056481 45 67 SH21693 21693 copy of SH10453 32.292668 180.601347 106.4470075 2.027133457 -0.027404 45 68 SH2848 2848 Pro7 tRNA-intron 46 62 42.742397 198.317382 120.5298895 2.081094758 0.015462 45 69 SH1389 1389 Leu1 tRNA 16 28 33.804708 167.845108 100.824908 2.003567834 0.143105 45 70 SH17786 17786 YKL180W_11_109271_110131_INTRON_310_615 3' exon 29.308355 161.871562 29.308355 133.563207 81.435781 1.910815266 0.05491 45 71 SH3871 3871 RNaseP RNaseP 321 335 48.090697 179.055633 113.573165 2.055275729 0.319706 45 72 SH10792 10792 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 846 866 27.943945 98.296635 63.12029 1.800168986 0.210705 45 73 SH20718 20718 YJL136C spliced 35.165571 197.77727 116.4714205 2.066219372 -0.10461 45 74 SH17588 17588 YJL191W_10_73786_74610_INTRON_11_418 intron 30.937994 183.845823 30.937994 153.907829 92.4229115 1.965779646 0.055594 45 75 SH17962 17962 YLR185W_12_522665_523290_INTRON_8_366 intron 30.918653 209.107356 30.918653 179.188703 105.053678 2.021411262 -0.090164 45 76 SH9211 9211 snR6 / U6 RNA 5' 41.342229 192.924355 117.133292 2.068680349 0.058478 45 77 SH19451 19451 CYC1 32.993734 180.560352 106.777043 2.02847789 -0.001292 45 78 SH19140 19140 YPL075W_16_412249_415357_INTRON_9_759 intron 28.814829 176.669072 28.814829 148.854243 88.834536 1.948581838 -0.065328 45 79 SH16745 16745 YGL076C_7_365994_364333_INTRON_565_1032 intron 26.70588 143.123934 26.70588 117.418054 72.061967 1.857706112 -0.030916 45 80 SH7700 7700 snoRNA cluster1 intergenic 28.731057 156.47499 28.731057 128.743933 78.737495 1.896181594 0.042784 45 81 SH20333 20333 YER074W spliced 34.878354 165.066453 99.9724035 1.999880133 0.216645 45 82 SH20276 20276 YDR447C spliced 38.929255 184.898258 111.9137565 2.048883474 0.113977 45 83 SH10023 10023 RUF6 5' 28.524997 164.102853 96.313925 1.983689082 -0.164888 45 84 SH6183 6183 snR40 5' 28.455675 171.312863 99.884269 1.999497096 -0.20477 45 85 SH9685 9685 RUF4 RUF4 201 216 36.590661 184.834307 110.712484 2.044196595 0.0709 45 86 SH21915 21915 copy of SH19998 93.193027 229.837024 161.5150255 2.20821293 0.312166 45 87 SH21802 21802 copy of SH15072 28.234697 155.077798 91.6562475 1.962162073 -0.140293 45 88 SH9905 9905 RUF5-1 RUF5-1 331 348 28.140659 125.467155 76.803907 1.885383313 0.021448 45 89 SH14981 14981 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.054594 188.33025 30.054594 159.275656 94.665125 1.976190013 -0.032298 45 90 SH19679 19679 SIR1 2.4 29.921994 175.458752 102.690373 2.011529731 -0.130044 45 91 SH9801 9801 RUF4 781-788 + 3' 781 30.780485 184.092066 107.4362755 2.031150944 -0.125965 45 92 SH15999 15999 YDL137W_4_216158_217074_INTRON_1_332 intron 102.832518 325.906544 102.832518 224.074026 163.453272 2.213393619 0.453221 45 93 SH6494 6494 snR46 5' 33.445073 137.019557 85.232315 1.930604285 0.311457 45 94 SH12110 12110 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7436 7451 211.390499 345.512752 278.4516255 2.444749757 0.391536 45 95 SH14066 14066 MT COB Cytbi4 29.170338 172.422305 29.170338 144.251967 86.7111525 1.938074959 -0.015028 45 96 SH7452 7452 snR69 3' 30.983767 176.590929 103.787348 2.016144415 -0.071394 45 97 SH9091 9091 snR14 / U4 RNA U4 71 88 32.788459 180.50539 106.6469245 2.027948336 -0.008255 45 98 SH3343 3343 Thr3 61-72 + 3' flank 61 109.492221 303.988867 206.740544 2.315425655 -0.069574 45 99 SH14603 14603 MT 21S rRNA Sce1 endonuc 89.986363 320.99221 89.986363 232.005847 160.996105 2.206815369 0.261328 45 100 SH4923 4923 snR9 snR9 21 40 28.548152 135.900087 82.2241195 1.914999232 -0.013956 45 101 SH11805 11805 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5911 5924 32.307226 173.845702 103.076464 2.013159512 0.022716 45 102 SH10758 10758 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 676 691 211.490235 470.301795 340.896015 2.532621924 -0.148201 45 103 SH3912 3912 RNase MRP 5' 28.321503 146.25739 87.2894465 1.94096174 -0.087982 45 104 SH14778 14778 MT ORF11; tRNA Leu; tRNA Gln tRNA Gln 28.267645 203.723742 28.267645 176.456097 102.361871 2.010138215 -0.242491 46 2 SH20564 20564 YHR001W-A spliced 31.550977 151.180374 91.3656755 1.960783069 0.110795 46 3 SH5720 5720 snR34 snR34 521 539 31.511481 207.903226 119.7073535 2.078120829 -0.2943 46 4 SH10202 10202 RUF6 RUF6 856 880 29.335131 155.290811 92.312971 1.965262729 -0.062057 46 5 SH5899 5899 snR36 5' 29.278863 131.428957 80.35391 1.905007014 0.065342 46 6 SH13614 13614 MT ATP6 5' 29.211315 168.83091 29.211315 140.619595 84.915455 1.928986741 0.007803 46 7 SH4079 4079 SRP RNA SRP RNA 286 300 52.364605 217.741376 135.0529905 2.130504205 -0.059852 46 8 SH18281 18281 YML067C_13_140214_139063_INTRON_32_124 5' exon 31.151551 223.639085 31.151551 193.487534 112.3195425 2.050455326 -0.186802 46 9 SH19650 19650 SIR1 2.2 31.064715 161.370564 96.2176395 1.983254698 0.025058 46 10 SH1687 1687 Leu6 tRNA 1 13 155.06546 395.475683 275.2705715 2.439759785 -0.191147 46 11 SH4549 4549 U3b (snR17b) U3b 301 323 28.849173 146.917939 87.883556 1.943907621 -0.052615 46 12 SH2771 2771 Pro6 5' flank 30.907569 168.770967 99.839268 1.999301388 -0.029979 46 13 SH10794 10794 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 856 874 28.842624 123.970297 76.4064605 1.883130082 0.082068 46 14 SH8522 8522 snR19 / U1 RNA U1 106 123 33.078905 170.886576 101.9827405 2.008526678 0.084286 46 15 SH20350 20350 YER102W spliced 37.399981 188.232064 112.8160225 2.052370784 0.046705 46 16 SH1443 1443 Leu2 5' flank - tRNA5 5 29.168015 178.872147 104.020081 2.017117188 -0.197328 46 17 SH98 98 Ala2 3' flank 39.969042 185.440958 112.705 2.051943183 0.126243 46 18 SH1068 1068 Gly3 3' flank 27.43892 126.79917 77.119045 1.887161643 -0.03924 46 19 SH3687 3687 Val3 5' flank 29.793795 176.344916 103.0693555 2.01312956 -0.143189 46 20 SH20389 20389 YFL034C-B spliced 32.174847 181.108484 106.6416655 2.027926919 -0.036514 46 21 SH17197 17197 YHR021C_8_148660_147862_INTRON_4_553 intron 32.384582 191.277089 32.384582 159.892507 96.1385445 1.982897543 0.112192 46 22 SH8320 8320 snoRNA cluster4 intergenic 30.372771 171.620548 30.372771 142.247777 86.310274 1.936062495 0.080949 46 23 SH19971 19971 YBL072C spliced 37.124954 201.584645 119.3547995 2.076839888 -0.107776 46 24 SH18056 18056 YLR333C_12_796335_795573_INTRON_1_423 intron 32.833395 197.789497 32.833395 165.956102 99.3947485 1.997363439 0.100105 46 25 SH19405 19405 YPR098C_16_729525_728944_INTRON_48_143 5' exon 30.708927 203.19819 30.708927 173.489263 102.099095 2.009021893 -0.070047 46 26 SH1796 1796 Leu8 tRNA 6 18 6102.408978 7229.618922 6666.01395 3.823866218 -0.24654 46 27 SH2384 2384 Phe4 5' flank 30.831414 172.118266 101.47484 2.006358375 -0.054544 46 28 SH11849 11849 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6131 6149 8816.661516 9407.073668 9111.867592 3.9596074 -0.189398 46 29 SH13252 13252 MT COX1 COX1-ai4 30.923217 202.625869 30.923217 172.702652 101.8129345 2.007802955 -0.05243 46 30 SH7295 7295 snR66 5' 386.325231 634.286718 510.3059745 2.707830653 0.070316 46 31 SH3106 3106 Ser4 5' flank 33.260249 182.554309 107.907279 2.033050741 -0.010187 46 32 SH13770 13770 MT COB intronic 31.078737 170.21907 31.078737 140.140333 85.609535 1.932522138 0.140927 46 33 SH350 350 Arg5 3' flank 685.711531 888.822791 787.267161 2.896122136 0.233922 46 34 SH10641 10641 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 91 109 101.533719 308.431624 204.9826715 2.311717149 -0.172097 46 35 SH7622 7622 snR189 181-189 + 3' 181 38.079441 179.436882 108.7581615 2.036461857 0.16366 46 36 SH19613 19613 RNA14 1.1 33.639038 188.388429 111.0137335 2.045376709 -0.049706 46 37 SH8509 8509 snR19 / U1 RNA U1 41 60 31.448924 144.515181 87.9820525 1.944394089 0.140598 46 38 SH15195 15195 MT COX3 cox3 33.793489 228.676221 33.793489 195.882732 114.8381105 2.060086038 -0.111804 46 39 SH14259 14259 MT VAR1 includes 5’ processing site 5' 29.299975 167.264121 29.299975 138.964146 84.1320605 1.924961525 0.023415 46 40 SH21677 21677 copy of SH9840 31.627523 174.047162 102.8373425 2.012150845 -0.01821 46 41 SH15929 15929 YDL108W_4_267697_268698_INTRON_29_109 intron/exon 31.664641 225.426125 31.664641 194.761484 113.2130625 2.053896539 -0.178306 46 42 SH8661 8661 LSR1 / U2 RNA 5' 29.402844 142.081599 85.7422215 1.933194731 0.013507 46 43 SH1077 1077 Gly3 3' flank 31.701046 181.165871 106.4334585 2.027078175 -0.054821 46 44 SH12591 12591 MT_15S MT_15S 29.417412 181.607409 29.417412 153.189997 91.3037045 1.960488399 -0.04521 46 45 SH18183 18183 YLR448W_12_1028848_1029762_INTRON_16_399 3' exon 31.704948 197.47893 31.704948 166.773982 99.239465 1.996684414 0.029731 46 46 SH10228 10228 RUF6 RUF6 986 1005 30.567162 125.10467 77.835916 1.891180041 0.194463 46 47 SH11122 11122 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2496 2511 34.022209 166.497927 100.260068 2.001127995 0.163282 46 48 SH15565 15565 YBR084C-A_2_415219_414144_INTRON_3_508 intron 31.775746 232.139291 31.775746 201.363545 116.5696455 2.066585476 -0.230363 46 49 SH11192 11192 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2846 2863 43.353565 188.03364 115.6936025 2.063309344 0.145667 46 50 SH12650 12650 MT_15S MT_15S 41.176213 253.4222 41.176213 213.245987 127.2111 2.104525008 -0.172497 46 51 SH14535 14535 MT 21S rRNA 21S rRNA3 29.752698 202.828699 29.752698 174.076001 101.9143495 2.008235337 -0.132612 46 52 SH3539 3539 Tyr2 5' flank 32.194827 167.163339 99.679083 1.998604034 0.056025 46 53 SH2036 2036 Lys3 3' flank 32.321284 189.571509 110.9463965 2.045113201 -0.108141 46 54 SH15697 15697 YBR220C_2_663261_662457_INTRON_302_722 intron 30.091693 178.944131 30.091693 149.852438 89.9720655 1.954107691 0.019666 46 55 SH16622 16622 YFL039C_6_54695_53260_INTRON_11_318 intron 32.511044 212.226593 32.511044 180.715549 106.6132965 2.027811372 -0.020397 46 56 SH867 867 Glu2 3' flank 32.553462 160.856164 96.704813 1.985448089 0.11581 46 57 SH2966 2966 Ser1 tRNA 61 75 160.480533 367.228793 263.854663 2.421364774 -0.020598 46 58 SH14754 14754 MT ORF11; tRNA Leu; tRNA Gln ORF11 30.156953 180.88965 30.156953 151.732697 90.944825 1.958777992 0.01406 46 59 SH16420 16420 YER056C-A_5_270183_269421_INTRON_38_434 3' exon 32.399519 223.8027 32.399519 192.403181 112.40135 2.050771527 -0.130264 46 60 SH10473 10473 RUF8 RUF8 291 307 31.079822 194.31576 112.697791 2.051915403 -0.196771 46 61 SH19201 19201 YPL081W_16_404945_406039_INTRON_8_508 intron 32.032164 182.212643 32.032164 151.180479 91.6063215 1.961925444 0.142206 46 62 SH14911 14911 MT tRNA Tyr 5' 29.478058 183.674332 29.478058 155.196274 92.337166 1.965376541 -0.051477 46 63 SH10790 10790 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 836 854 31.465617 130.928429 81.197023 1.909540107 0.220017 46 64 SH16366 16366 YEL012W_5_131772_132551_INTRON_6_128 intron/exon 31.131695 185.06154 31.131695 154.929845 93.03077 1.968626616 0.063185 46 65 SH13187 13187 MT COX1 Exon4 30.784397 180.566654 30.784397 150.782257 90.783327 1.958006095 0.061886 46 66 SH18398 18398 YMR125W_13_517538_520445_INTRON_26_347 intron 30.440119 196.339223 30.440119 166.899104 98.6696115 1.994183418 -0.047136 46 67 SH16276 16276 YDR447C_4_1355542_1354818_INTRON_4_317 intron 30.113523 183.052424 30.113523 153.938901 92.026212 1.963911546 -0.000625 46 68 SH17621 17621 YJR094W-A_10_608000_608553_INTRON_3_277 5' exon 34.122389 263.76045 34.122389 230.638061 132.380225 2.121823115 -0.464742 46 69 SH19885 19885 Positive Control 1 33.826345 179.233706 106.5300255 2.027472031 0.041007 46 70 SH20224 20224 YDR129C spliced 29.343785 159.874764 94.6092745 1.975933712 -0.085011 46 71 SH780 780 Glu1 5' flank 31.284593 164.925797 98.105195 1.991692005 0.016102 46 72 SH10750 10750 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 636 653 33.259609 170.353215 101.806412 2.007775132 0.097646 46 73 SH7327 7327 snR66 3' 45.772495 168.945459 107.358977 2.030838365 0.422875 46 74 SH21149 21149 YNL246W spliced 28.961284 172.214282 100.587783 2.002545236 -0.17247 46 75 SH11537 11537 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4571 4584 769.521069 661.343275 715.432172 2.854568466 0.859975 46 76 SH9571 9571 RUF3 RUF3 241 258 31.052651 153.417614 92.2351325 1.964896376 0.065855 46 77 SH11487 11487 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4321 4336 89.08843 249.490748 169.289589 2.228630251 0.109702 46 78 SH11413 11413 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3951 3967 696.776241 765.509296 731.1427685 2.864002189 0.496966 46 79 SH14218 14218 MT ATP9 ATP9 30.993404 193.00253 30.993404 163.009126 97.001265 1.986777398 0.010498 46 80 SH11516 11516 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4466 4484 47.628457 195.511615 121.570036 2.084826545 0.115362 46 81 SH1801 1801 Leu8 tRNA-exon/intron 31 48 32.921586 154.743755 93.8326705 1.972354077 0.176191 46 82 SH18887 18887 YOL047C_15_242745_241612_INTRON_244_306 intron/exon 41.124355 232.917105 41.124355 192.79275 116.9585525 2.068031985 0.056867 46 83 SH12810 12810 MT COX1 COX1ai1 30.664895 178.413525 30.664895 148.74863 89.7067625 1.952825183 0.064814 46 84 SH19341 19341 YPL241C_16_96258_95372_INTRON_26_105 3' exon 34.706536 212.606749 34.706536 178.900213 106.8033745 2.028584975 0.074923 46 85 SH21844 21844 copy of SH17379 30.512782 150.945864 90.729323 1.95774767 0.042615 46 86 SH603 603 Gln1 tRNA 56 68 12649.39112 4838.81473 8744.102925 3.941715261 1.335679 46 87 SH13847 13847 MT COB Cytbi2 32.425094 192.861716 32.425094 161.436622 96.930858 1.986462057 0.104765 46 88 SH4239 4239 telomerase RNA telomerase 231 246 32.344991 162.508922 97.4269565 1.988679136 0.093415 46 89 SH19301 19301 YPL198W_16_173151_174701_INTRON_12_420 intron 32.252218 162.13308 32.252218 130.880862 81.56654 1.91151204 0.272302 46 90 SH9306 9306 RUF1 RUF1 106 123 34.175043 203.380326 118.7776845 2.074734855 -0.185666 46 91 SH12496 12496 MT_tRNA Pro 5' / tRNA 32.023022 201.132887 32.023022 170.109865 101.0664435 2.004606983 0.02827 46 92 SH11244 11244 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3106 3123 18537.64288 16284.44051 17411.04169 4.240824755 -0.100445 46 93 SH10058 10058 RUF6 RUF6 136 158 33.748745 196.128982 114.9388635 2.060466899 -0.115478 46 94 SH670 670 Gln2 3' flank 35.581925 185.187424 110.3846745 2.042908781 0.046478 46 95 SH1866 1866 Leu9 tRNA 71 85 2971.924314 3626.936749 3299.430532 3.518438989 -0.08563 46 96 SH5446 5446 snR31 3' 31.261567 173.906419 102.583993 2.0110796 -0.039144 46 97 SH1705 1705 Leu6 3' flank 33.059027 160.871629 96.965328 1.986616471 0.144522 46 98 SH1502 1502 Leu3 5' flank 32.884527 191.820397 112.352462 2.050582594 -0.107345 46 99 SH21664 21664 copy of SH9399 30.772542 150.153459 90.4630005 1.956470988 0.064472 46 100 SH17025 17025 YGR148C_7_788173_787307_INTRON_1_392 intron/exon 32.566723 184.294767 32.566723 152.728044 92.6473835 1.966833159 0.168303 46 101 SH8924 8924 snR17a / U3a 5' 37.268167 214.567805 125.917986 2.100087769 -0.246768 46 102 SH12831 12831 MT COX1 COX1ai1 30.387725 186.319969 30.387725 156.932244 93.6599845 1.971554082 0.002586 46 103 SH1279 1279 Ile2 tRNA-intron/exon 91 105 63.225069 231.786292 147.5056805 2.168808745 -0.044388 46 104 SH19549 19549 CBP1 2.2 32.136779 182.371175 107.253977 2.030413405 -0.049657 47 2 SH2716 2716 Pro5 5' flank 29.507797 157.35397 93.4308835 1.970490456 -0.060569 47 3 SH15294 15294 MT 9S rRNA 9S / 3' 30.523808 196.234845 30.523808 166.711037 98.6174225 1.993953647 -0.040858 47 4 SH14018 14018 MT COB Exon4 27.261913 172.492211 27.261913 146.230298 86.7461055 1.938249986 -0.168144 47 5 SH11271 11271 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3241 3259 29.311076 141.907889 85.6094825 1.932521872 0.007877 47 6 SH7199 7199 snR64 snR64 61 78 39.803831 170.745924 105.2748775 2.022324745 0.30312 47 7 SH19444 19444 YPR187W_16_911252_911795_INTRON_21_96 3' exon 29.131358 199.409065 29.131358 171.277707 100.2045325 2.000887366 -0.155901 47 8 SH21888 21888 copy of SH18603 84.988492 259.010263 171.9993775 2.235526875 -0.007301 47 9 SH16016 16016 YDL137W_4_216158_217074_INTRON_1_332 3' exon 28.9598 202.026234 28.9598 174.066434 101.513117 2.006522163 -0.183051 47 10 SH7197 7197 snR64 snR64 51 68 37.253802 208.277831 122.7658165 2.089077457 -0.179007 47 11 SH11597 11597 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4871 4886 18922.17862 12591.95858 15757.0686 4.197475426 0.335075 47 12 SH17234 17234 YHR077C_8_255757_252375_INTRON_7_119 intron/exon 99.140504 375.399321 99.140504 277.258817 188.1996605 2.274618836 0.007583 47 13 SH8958 8958 snR17a / U3a U3a 76 94 28.920255 156.519021 92.719638 1.967171727 -0.097999 47 14 SH19538 19538 CBP1 1.2 29.013879 172.198852 100.6063655 2.00262546 -0.168632 47 15 SH7563 7563 snR79 3' 33.360114 180.239596 106.799855 2.028570663 0.014937 47 16 SH21764 21764 copy of SH13599 29.320734 146.398491 87.8596125 1.943789284 -0.015708 47 17 SH2794 2794 Pro6 tRNA-intron/exon 61 75 1265.510665 1835.526239 1550.518452 3.190476939 -0.139554 47 18 SH2417 2417 Phe4 3' flank 31.864277 156.828741 94.346509 1.974725835 0.101571 47 19 SH6341 6341 snR43 5' 32.077845 185.520669 108.799257 2.03662593 -0.080749 47 20 SH5372 5372 snR31 5' 30.100485 157.281408 93.6909465 1.971697626 -0.018925 47 21 SH17967 17967 YLR185W_12_522665_523290_INTRON_8_366 intron 32.442421 208.097262 32.442421 176.654841 104.548631 2.01931835 0.014236 47 22 SH4601 4601 snR3 5' 72.265749 243.563005 157.914377 2.198421671 -0.031969 47 23 SH8204 8204 snoRNA cluster 3; intergenic/snR51 30.488472 190.568704 30.488472 161.080232 95.784352 1.981294565 -0.011679 47 24 SH20048 20048 YBR191W spliced 37.191582 210.778732 123.985157 2.093369696 -0.207287 47 25 SH9132 9132 snR7 U5 RNA 5' 30.627534 129.820369 80.2239515 1.90430405 0.169784 47 26 SH16934 16934 YGR027C_7_534779_534126_INTRON_1_312 exon/intron 30.677631 154.736997 30.677631 125.059366 77.8684985 1.8913618 0.202343 47 27 SH19144 19144 YPL075W_16_412249_415357_INTRON_9_759 intron 30.722602 229.301849 30.722602 199.579247 115.1509245 2.061267429 -0.25572 47 28 SH15519 15519 YBR048W_2_332790_333771_INTRON_46_556 intron 43.002385 239.170398 43.002385 197.168013 120.085199 2.079489482 0.032384 47 29 SH6700 6700 snR49 snR49 26 41 33.038711 175.801198 104.4199545 2.0187835 0.045414 47 30 SH12186 12186 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7816 7834 33.094336 191.151588 112.122962 2.049694562 -0.093833 47 31 SH16926 16926 YGR001C_7_498029_497128_INTRON_36_97 exon/intron 30.923836 201.344891 30.923836 171.421055 101.1724455 2.005062248 -0.044825 47 32 SH8734 8734 LSR1 / U2 RNA U2 311 333 28.752931 134.18611 81.4695205 1.91099516 0.010988 47 33 SH3617 3617 Val1 3' flank 29.93974 143.25949 86.599615 1.937515961 0.045183 47 34 SH19501 19501 YPT1 33.385981 168.686089 101.036035 2.004476295 0.114727 47 35 SH18263 18263 YML056C_13_164176_162194_INTRON_461_868 intron 33.472329 240.431071 33.472329 207.958742 120.7155355 2.081763165 -0.24885 47 36 SH14563 14563 MT 21S rRNA 21S rRNA3 38.084242 240.957475 38.084242 203.873233 120.9787375 2.082709048 -0.11693 47 37 SH6972 6972 snR60 5' 29.115833 130.857846 79.9868395 1.903018537 0.056976 47 38 SH17265 17265 YHR123W_8_354817_356083_INTRON_51_141 5' exon 31.455924 174.180019 31.455924 143.724095 87.5900095 1.942454573 0.145506 47 39 SH7130 7130 snR63 snR63 156 170 36.079854 198.138016 117.108935 2.068590031 -0.090419 47 40 SH9627 9627 RUF4 5' 31.588602 154.532137 93.0603695 1.968764773 0.095505 47 41 SH13115 13115 MT COX1 COX1ai3 31.641639 185.038111 31.641639 154.396472 93.0190555 1.968571925 0.099698 47 42 SH20493 20493 YGL251C spliced 33.971473 167.324443 100.647958 2.002804968 0.155461 47 43 SH18164 18164 YLR448W_12_1028848_1029762_INTRON_16_399 intron 36.296944 233.65591 36.296944 198.358966 117.327955 2.069401501 -0.088602 47 44 SH14899 14899 MT tRNA Ile tRNA 34.031136 234.566117 34.031136 201.534981 117.7830585 2.071082828 -0.168801 47 45 SH18096 18096 YLR367W_12_855877_857316_INTRON_698_1180 intron 31.760078 208.243626 31.760078 177.483548 104.621813 2.019622242 -0.030256 47 46 SH1547 1547 Leu4 5' flank 31.783786 155.542368 93.663077 1.971568421 0.10301 47 47 SH7588 7588 snR189 snR189 11 27 34.115689 183.642769 108.879229 2.036945037 0.010202 47 48 SH9594 9594 RUF3 RUF3 356 373 31.873019 150.306316 91.0896675 1.959469117 0.136568 47 49 SH12299 12299 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.645284 218.656205 29.645284 190.010921 109.8281025 2.04071348 -0.228365 47 50 SH16272 16272 YDR447C_4_1355542_1354818_INTRON_4_317 intron 36.674427 236.287995 36.674427 200.613568 118.6439975 2.074245771 -0.105898 47 51 SH1486 1486 Leu3 5' flank 29.841475 142.541954 86.1917145 1.93546552 0.042172 47 52 SH7285 7285 snR66 5' 29.951581 172.96715 101.4593655 2.006292142 -0.113665 47 53 SH12224 12224 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.05497 156.440566 30.05497 127.385596 78.720283 1.896086647 0.144794 47 54 SH4319 4319 telomerase RNA telomerase 631 645 32.483009 180.93018 106.7065945 2.02819126 -0.023433 47 55 SH10799 10799 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS/18S 881 901 32.545327 150.81556 91.6804435 1.962276706 0.177147 47 56 SH21511 21511 copy of SH2856 38.45146 177.649236 108.050348 2.03362617 0.192345 47 57 SH13070 13070 MT COX1 Exon3 32.554181 161.861397 32.554181 130.307216 81.4306985 1.91078816 0.295352 47 58 SH13729 13729 MT COB Exon1 30.14824 165.88929 30.14824 136.74105 83.444645 1.921398471 0.09609 47 59 SH11632 11632 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5046 5061 34.7197 174.599641 104.6596705 2.019779363 0.116437 47 60 SH12522 12522 MT_ORF6 + ORF7 (hypothetical) ORF6/7 29.894982 157.360046 29.894982 128.465064 79.180023 1.898615624 0.126977 47 61 SH6909 6909 snR58 5' 34.315727 181.533682 107.9247045 2.033120868 0.036698 47 62 SH8921 8921 LSR1 / U2 RNA 3' 166.729793 332.128498 249.4291455 2.396947199 0.202282 47 63 SH19072 19072 YOR293W_15_867094_867848_INTRON_53_489 intron 31.433973 168.338166 31.433973 137.904193 84.669083 1.927724856 0.177445 47 64 SH11428 11428 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4026 4039 31356.57011 29148.24432 30252.40721 4.480759938 -0.344022 47 65 SH9068 9068 snR14 / U4 RNA 5' 32.972937 141.18874 87.0808385 1.939922602 0.25767 47 66 SH9926 9926 RUF5-1 RUF5-1 436 456 31.509146 175.349826 103.429486 2.014644366 -0.032796 47 67 SH2505 2505 Pro1 tRNA 16 32 67.178056 166.475543 116.8267995 2.067542479 0.701459 47 68 SH15356 15356 YBL026W_2_170585_171000_INTRON_55_182 intron 29.804411 193.421661 29.804411 164.61725 97.2108305 1.987714653 -0.076368 47 69 SH8887 8887 LSR1 / U2 RNA U2 1076 1093 29.559518 214.619138 122.089328 2.086677703 -0.424552 47 70 SH5121 5121 snR11 snR11 206 220 33.603178 190.346016 111.974597 2.049119508 -0.068428 47 71 SH12261 12261 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.547935 212.122734 35.547935 177.574799 106.561367 2.027599783 0.116166 47 72 SH3877 3877 RNaseP RNaseP 351 366 47.030973 165.597503 106.314238 2.026591431 0.484894 47 73 SH1435 1435 Leu2 5' flank 31.170631 160.618429 95.89453 1.981793835 0.036168 47 74 SH1760 1760 Leu7 3' flank 29.060341 143.764272 86.4123065 1.936575597 -0.020345 47 75 SH21405 21405 Pro8 spliced 145.574737 327.997858 236.7862975 2.374356567 0.081069 47 76 SH16538 16538 YER131W_5_423587_424307_INTRON_1_361 intron 31.192457 193.715981 31.192457 163.523524 97.3579905 1.988371601 0.019264 47 77 SH5674 5674 snR34 snR34 291 307 35.409035 165.26574 100.3373875 2.001462789 0.232699 47 78 SH13855 13855 MT COB Cytbi2 29.089333 219.163812 29.089333 191.074479 110.081906 2.04171594 -0.269426 47 79 SH12052 12052 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7146 7159 31.144161 173.247889 102.196025 2.009434004 -0.042324 47 80 SH21496 21496 copy of SH2289 31.069182 166.029939 98.5495605 1.993654692 -0.003593 47 81 SH19269 19269 YPL143W_16_282121_282969_INTRON_20_544 intron 33.059352 217.154116 33.059352 185.094764 109.077058 2.037733416 -0.040766 47 82 SH19967 19967 YBL072C spliced 350.117913 526.11737 438.1176415 2.641590741 0.26159 47 83 SH8438 8438 snoRNA cluster 5 intergenic/snR128 64.054282 283.439495 64.054282 220.385213 142.2197475 2.152959903 0.070646 47 84 SH2942 2942 Ser1 5' flank 32.741604 170.171965 101.4567845 2.006281094 0.069384 47 85 SH11972 11972 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6746 6764 576.841478 664.157733 620.4996055 2.79274151 0.491792 47 86 SH10601 10601 RUF8 RUF8 931 947 36.71643 163.734027 100.2252285 2.000977055 0.291845 47 87 SH927 927 Glu3 3' flank 28.434389 169.963826 99.1991075 1.996507765 -0.199918 47 88 SH5432 5432 snR31 3' 30.434532 145.046404 87.740468 1.943199947 0.069583 47 89 SH14190 14190 MT COB Exon6 30.376164 165.48074 30.376164 136.104576 83.24037 1.920334002 0.115588 47 90 SH961 961 Gly1 tRNA 56 68 46.675534 179.3614 113.018467 2.053149412 0.297881 47 91 SH15736 15736 YBR230C_2_680008_679507_INTRON_12_108 3' exon 46.549058 239.731837 46.549058 194.182779 120.3659185 2.080503534 0.116139 47 92 SH17795 17795 YKL186C_11_93537_92746_INTRON_71_233 intron 36.220397 225.205855 36.220397 189.985458 113.1029275 2.053473846 0.003839 47 93 SH9620 9620 RUF3 3' 30.01208 154.818265 92.4151725 1.965743278 -0.012242 47 94 SH5515 5515 snR32 3' 31.893242 148.148366 90.020804 1.954342887 0.149599 47 95 SH19878 19878 Negative Control 33.738496 180.062514 106.900505 2.028979757 0.030107 47 96 SH17676 17676 YKL006W_11_431544_432358_INTRON_130_527 5' exon 31.557544 196.210352 31.557544 165.652808 98.605176 1.993899713 0.027873 47 97 SH19454 19454 CYC1 29.388775 144.817804 87.1032895 1.940034557 -0.002366 47 98 SH5118 5118 snR11 snR11 191 207 33.149109 172.305641 102.727375 2.011686191 0.079847 47 99 SH4958 4958 snR9 3' 32.94888 174.889003 103.9189415 2.016694714 0.050931 47 100 SH1364 1364 Ile3 3' flank 29.835318 133.785519 81.8104185 1.912808614 0.091144 47 101 SH21635 21635 copy of SH8140 70.675137 249.333558 160.0043475 2.204131783 -0.098506 47 102 SH13498 13498 MT COX1 intronic 28.566826 173.431338 28.566826 145.864512 87.215669 1.940594516 -0.067721 47 103 SH8180 8180 snoRNA cluster 3; snR70 32.303053 182.639008 32.303053 151.335955 91.819504 1.962934942 0.15885 47 104 SH661 661 Gln2 3' flank 34.122389 190.98849 112.5554395 2.051366488 -0.055746 48 2 SH5655 5655 snR34 snR34 196 218 31.738508 148.920442 90.329475 1.955829486 0.135295 48 3 SH6255 6255 snR42 snR42 56 77 29.518294 144.710735 87.1145145 1.940090521 0.007471 48 4 SH13411 13411 MT COX1 intronic 29.437373 206.847971 29.437373 178.410598 103.9239855 2.016715794 -0.177519 48 5 SH12419 12419 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.468177 182.542238 31.468177 152.074061 91.771119 1.962706027 0.100567 48 6 SH6477 6477 snR45 3' 29.243767 139.233679 84.238723 1.925511775 0.017861 48 7 SH15127 15127 MT tRNA Phe 5' / tRNA 29.141283 170.449035 29.141283 142.307752 85.7245175 1.933105049 -0.006552 48 8 SH20636 20636 YHR141C spliced 29.045666 170.636967 99.8413165 1.999310299 -0.158979 48 9 SH16273 16273 YDR447C_4_1355542_1354818_INTRON_4_317 intron 293.228852 768.589243 293.228852 476.360391 384.7946215 2.585228993 0.214694 48 10 SH7352 7352 snR68 5' - 2 -19 2 28.916578 136.394595 82.6555865 1.917272212 0.010219 48 11 SH19182 19182 YPL079W_16_406631_407534_INTRON_12_432 intron 43.540395 249.463952 43.540395 206.923557 125.231976 2.097715233 -0.069304 48 12 SH3167 3167 Ser5 5' flank 28.934007 150.307277 89.620642 1.952408051 -0.064207 48 13 SH6905 6905 snR56 3' 29.011084 156.463992 92.737538 1.967255562 -0.091206 48 14 SH19004 19004 YOR122C_15_552886_552297_INTRON_14_222 3' exon 30.18356 212.09398 30.18356 182.91042 106.54699 2.027541185 -0.156032 48 15 SH4438 4438 telomerase RNA telomerase 1226 1242 29.289884 146.018941 87.6544125 1.942773783 -0.015902 48 16 SH18424 18424 YMR133W_13_536206_537608_INTRON_1243_1358 3' exon 29.473005 194.069707 29.473005 165.596702 97.5348535 1.989159836 -0.104379 48 17 SH13672 13672 MT ATP6 ATP6 / 3' 32.880637 227.601717 32.880637 195.72108 114.3008585 2.058049492 -0.141457 48 18 SH9467 9467 RUF2 RUF2 176 193 32.014187 190.545213 111.2797 2.046415946 -0.128222 48 19 SH17255 17255 YHR097C_8_298611_297387_INTRON_126_249 3' exon 32.201671 205.171826 32.201671 173.970155 103.085913 2.013199322 0.015871 48 20 SH12978 12978 MT COX1 COX1ai2 30.182592 191.736604 30.182592 162.554012 96.368302 1.983934207 -0.039983 48 21 SH20076 20076 YCR031C spliced 34.677512 185.39328 110.035396 2.041532411 0.01376 48 22 SH7412 7412 snR69 5' 32.583058 131.836954 82.210006 1.91492468 0.288124 48 23 SH14284 14284 MT VAR1 includes 5’ processing site VAR1 30.451419 182.112969 30.451419 152.66155 91.5564845 1.961689109 0.029282 48 24 SH20423 20423 YGL031C spliced 41.517198 203.24039 122.378794 2.087706169 -0.058028 48 25 SH15378 15378 YBL027W_2_168385_169338_INTRON_3_386 intron 30.528296 169.33836 30.528296 139.810064 85.16918 1.930282466 0.105177 48 26 SH9036 9036 snR17a / U3a U3a 466 480 107.058121 291.431787 199.244954 2.299387331 -0.012207 48 27 SH12300 12300 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.802585 215.029463 32.802585 183.226878 108.0147315 2.03348299 -0.032991 48 28 SH20722 20722 YJL136C spliced 32.848039 155.300441 94.07424 1.973470718 0.168362 48 29 SH20649 20649 YIL004C spliced 30.687971 171.421107 101.054539 2.004555825 -0.059138 48 30 SH12985 12985 MT COX1 COX1ai2 30.749159 181.573587 30.749159 151.824428 91.2867935 1.960407953 0.053929 48 31 SH11905 11905 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6411 6428 46.424584 157.807463 102.1160235 2.009093895 0.583599 48 32 SH11101 11101 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2391 2404 1239.01595 1491.195612 1365.105781 3.135166306 0.161392 48 33 SH8609 8609 snR19 / U1 RNA U1 541 557 46.65986 175.876586 111.268223 2.046371152 0.342517 48 34 SH11230 11230 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3036 3061 33.299734 177.558798 105.429266 2.022961183 0.038054 48 35 SH8389 8389 snoRNA cluster 5 snR190 42.399006 205.061826 42.399006 163.66282 103.030913 2.012967548 0.44008 48 36 SH5753 5753 snR35 5' 30.099387 142.340364 86.2198755 1.935607391 0.061399 48 37 SH4228 4228 telomerase RNA telomerase 176 193 30.18025 128.812307 79.4962785 1.900346798 0.144875 48 38 SH20233 20233 YDR139C spliced 31.392139 193.224832 112.3084855 2.050412571 -0.175293 48 39 SH2619 2619 Pro3 tRNA-intron 46 63 42.846748 206.704961 124.7758545 2.096130553 -0.077131 48 40 SH18821 18821 YNL302C_14_62942_61957_INTRON_21_571 intron 1875.922671 4665.699008 1875.922671 2790.776337 2333.349504 3.367979795 -0.278233 48 41 SH12370 12370 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 38.466847 232.291506 38.466847 194.824659 116.645753 2.066868931 -0.008368 48 42 SH3558 3558 Tyr2 tRNA 61 73 40.830964 177.571852 109.201408 2.038228238 0.235774 48 43 SH10640 10640 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 86 99 2269.650743 2770.766994 2520.208869 3.401436535 -0.015516 48 44 SH12477 12477 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 336.009018 981.735065 336.009018 646.726047 491.3675325 2.691406457 -0.132829 48 45 SH13775 13775 MT COB intronic 34.099505 225.296603 34.099505 192.197098 113.1483015 2.053648039 -0.067194 48 46 SH13654 13654 MT ATP6 ATP6 29.543832 175.717698 29.543832 147.173866 88.358849 1.94625005 -0.00386 48 47 SH11100 11100 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2386 2399 1875.28705 2741.930379 2308.608715 3.363350331 -0.251054 48 48 SH8036 8036 snoRNA cluster 2 snR55/intergenic 34.24804 202.664362 34.24804 169.416322 101.832181 2.007885045 0.150906 48 49 SH3497 3497 Tyr1 tRNA-exon/intron 26 42 34.32887 177.155195 105.7420325 2.024247654 0.078356 48 50 SH10185 10185 RUF6 RUF6 771 787 32.110164 182.930147 107.5201555 2.031489884 -0.055813 48 51 SH13721 13721 MT COB 5' 29.889981 174.780201 29.889981 145.89022 87.8901005 1.943939961 0.027415 48 52 SH2810 2810 Pro6 3' flank 29.986642 124.604537 77.2955895 1.888154714 0.157837 48 53 SH14032 14032 MT COB Cytbi4 27.738272 181.737468 27.738272 154.999196 91.368734 1.960797607 -0.177046 48 54 SH16687 16687 YGL030W_7_439087_439634_INTRON_4_233 intron 32.484834 250.863093 32.484834 219.378259 125.9315465 2.100134537 -0.386462 48 55 SH14222 14222 MT ATP9 ATP9 32.528814 224.802359 32.528814 193.273545 112.9011795 2.052698479 -0.133109 48 56 SH19702 19702 Negative Control 36.061616 174.22092 105.141268 2.02177321 0.165529 48 57 SH11600 11600 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4886 4906 714.242952 594.983661 654.6133065 2.815984829 0.9389 48 58 SH12775 12775 MT COX1 COX1ai1 34.779744 245.371171 34.779744 211.591427 123.1855855 2.090559892 -0.259457 48 59 SH12208 12208 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7926 7953 20223.17838 22392.84862 21308.0135 4.328542963 -0.494027 48 60 SH9305 9305 RUF1 RUF1 101 118 34.482449 198.850755 116.666602 2.066946549 -0.130278 48 61 SH7536 7536 snR79 snR79 21 38 31.947774 156.235707 94.0917405 1.973551502 0.110087 48 62 SH3789 3789 RNaseP 5' flank 29.400563 134.898322 82.1494425 1.91460462 0.053774 48 63 SH7384 7384 snR68 3' 31.384612 181.305023 106.3448175 2.02671633 -0.074131 48 64 SH8588 8588 snR19 / U1 RNA U1 436 453 33.295921 141.073514 87.1847175 1.940440365 0.278561 48 65 SH5230 5230 snR30 snR30 1 16 48.488259 198.36495 123.4266045 2.091408782 0.094133 48 66 SH5682 5682 snR34 snR34 331 347 31.470632 140.675997 86.0733145 1.934868527 0.163842 48 67 SH3251 3251 Thr1 3' flank 30.060325 160.49033 95.2753275 1.97898045 -0.038057 48 68 SH14103 14103 MT COB Cytbi4 29.782103 158.11508 29.782103 129.332977 79.55754 1.900681346 0.113762 48 69 SH11432 11432 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4046 4061 45.580214 221.128237 133.3542255 2.125006781 -0.189173 48 70 SH2688 2688 Pro4 3' flank 29.367432 138.144232 83.755832 1.923015057 0.03287 48 71 SH13543 13543 MT COX1 intronic 32.406388 254.300883 32.406388 222.894495 127.6504415 2.106022321 -0.422803 48 72 SH9663 9663 RUF4 RUF4 91 105 41.817721 166.707603 104.262662 2.018128809 0.390168 48 73 SH2710 2710 Pro5 5' flank 37.560053 161.771473 99.665763 1.998545996 0.339407 48 74 SH722 722 Gln3 3' flank 29.147953 149.80776 89.4778565 1.951715572 -0.046221 48 75 SH10152 10152 RUF6 RUF6 606 628 29.181296 146.638724 87.91001 1.944038329 -0.027025 48 76 SH6747 6747 snR50 5' 37.665304 154.30398 95.984642 1.982201749 0.422508 48 77 SH7510 7510 snR71 3' 31.354718 177.688314 104.521516 2.0192057 -0.05544 48 78 SH14631 14631 MT 21S rRNA Sce1 endonuc 32.406588 235.901029 32.406588 204.494441 118.4505145 2.073536951 -0.235156 48 79 SH18626 18626 YNL096C_14_444312_443395_INTRON_145_489 intron 33.417909 191.892543 33.417909 159.474634 96.4462715 1.984285443 0.173567 48 80 SH18072 18072 YLR344W_12_819312_820142_INTRON_20_466 intron 33.333703 193.77789 33.333703 161.444187 97.388945 1.988509661 0.15638 48 81 SH807 807 Glu1 tRNA 51 63 39.518481 174.601866 107.0601735 2.029627943 0.249394 48 82 SH15870 15870 YDL079C_4_314747_312950_INTRON_413_704 intron 31.00419 191.459228 31.00419 161.455038 96.229614 1.983308744 0.020881 48 83 SH15423 15423 YBL072C_2_89435_88518_INTRON_1_308 5' exon 30.887169 221.95605 30.887169 192.068881 111.478025 2.047189266 -0.184594 48 84 SH3176 3176 Ser5 tRNA 1 13 432.380602 658.140247 545.2604245 2.736603977 0.148128 48 85 SH17434 17434 YIL133C_9_99416_98527_INTRON_32_321 intron 50.401223 256.027802 50.401223 206.626579 128.513901 2.108950107 0.029031 48 86 SH12118 12118 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7476 7493 34.771897 194.392862 114.5823795 2.059117837 -0.074983 48 87 SH18661 18661 YNL112W_14_413636_416278_INTRON_1274_2275 intron 32.658276 233.605908 32.658276 201.947632 117.302954 2.069308949 -0.202434 48 88 SH2986 2986 Ser1 3' flank 32.619863 188.680015 110.649939 2.043951179 -0.089171 48 89 SH10232 10232 RUF6 RUF6 1006 1023 32.582496 139.313303 85.9478995 1.934235267 0.243782 48 90 SH15160 15160 MT tRNA Val 5' 30.484805 186.088071 30.484805 156.603266 93.5440355 1.971016101 0.010905 48 91 SH10397 10397 RUF8 5' 40.696147 198.537225 119.616686 2.077791766 -0.016512 48 92 SH16866 16866 YGL187C_7_150529_149708_INTRON_1_342 intron 30.361622 179.903062 30.361622 150.54144 90.451531 1.956415922 0.034482 48 93 SH8685 8685 LSR1 / U2 RNA U2 66 80 30.269639 174.807062 102.5383505 2.010886327 -0.104669 48 94 SH3151 3151 Ser4 3' flank 32.184143 162.116689 97.150416 1.987444665 0.08655 48 95 SH19287 19287 YPL175W_16_218629_220087_INTRON_18_117 5' exon 30.008042 193.954944 30.008042 164.946902 97.477472 1.988904258 -0.063858 48 96 SH3636 3636 Val2 5' flank 32.855902 155.407017 94.1314595 1.973734792 0.168112 48 97 SH10272 10272 RUF7 5' 32.647815 177.132242 104.8900285 2.020734203 0.018428 48 98 SH18067 18067 YLR344W_12_819312_820142_INTRON_20_466 intron 29.447425 182.732321 29.447425 154.284896 91.8661605 1.963155566 -0.048864 48 99 SH20456 20456 YGL178W spliced 31.216046 148.757046 89.986546 1.954177582 0.101737 48 100 SH5567 5567 snR33 snR33 121 135 32.967998 180.225671 106.5968345 2.027744308 0.000904 48 101 SH5163 5163 snR13 5' 30.809319 145.134505 87.971912 1.944344031 0.094491 48 102 SH10231 10231 RUF6 RUF6 1001 1020 28.690078 157.333202 93.01164 1.968537302 -0.118785 48 103 SH11364 11364 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3706 3723 2910.938528 2197.249983 2554.094256 3.40723692 0.675976 48 104 SH3145 3145 Ser4 3' flank 47.812032 164.505011 106.1585215 2.025954861 0.509905 49 2 SH12243 12243 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.632817 177.684466 29.632817 149.051649 89.342233 1.951056803 -0.007885 49 3 SH19248 19248 YPL129W_16_305297_306136_INTRON_10_114 exon/intron 31.706484 201.613698 31.706484 170.907214 101.306849 2.005638807 0.004948 49 4 SH20542 20542 YGR214W spliced 29.473333 181.421151 105.447242 2.023035225 -0.192239 49 5 SH3585 3585 Val1 5' flank 29.374584 186.183729 107.7791565 2.03253478 -0.22484 49 6 SH16346 16346 YDR500C_4_1450856_1450201_INTRON_8_396 intron 31.385418 237.257105 31.385418 206.871687 119.1285525 2.076015865 -0.290709 49 7 SH20 20 Ala1 5' flank - tRNA10 5' flank 10 184.643848 419.832831 302.2383395 2.480349555 -0.104184 49 8 SH3950 3950 RNase MRP RNaseMRP 166 180 33.270127 160.21799 96.7440585 1.985624302 0.160557 49 9 SH10507 10507 RUF8 RUF8 461 482 30.04208 173.993518 102.017799 2.00867595 -0.114037 49 10 SH16359 16359 YEL012W_5_131772_132551_INTRON_6_128 5' exon 354.211167 958.522634 354.211167 605.311467 479.761317 2.681025228 0.04172 49 11 SH17630 17630 YJR094W-A_10_608000_608553_INTRON_3_277 intron 35.235061 200.966687 35.235061 166.731626 100.9833435 2.004249746 0.211897 49 12 SH14879 14879 MT tRNA Ala 5' / tRNA 31.102285 205.707259 31.102285 175.604974 103.3536295 2.014325732 -0.058569 49 13 SH8097 8097 snoRNA cluster 2 3' 31.207003 179.550145 31.207003 149.343142 90.2750725 1.955567846 0.097951 49 14 SH3664 3664 Val2 tRNA 61 73 186.176385 449.78711 317.9817475 2.502402192 -0.215934 49 15 SH18284 18284 YML067C_13_140214_139063_INTRON_32_124 intron 29.41618 188.420081 29.41618 160.003901 94.7100405 1.976396022 -0.080552 49 16 SH10879 10879 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1281 1296 1222.716612 1305.853627 1264.28512 3.101845026 0.354814 49 17 SH19510 19510 ACT1 29.79343 128.878475 79.3359525 1.89947004 0.117306 49 18 SH18477 18477 YMR143W_13_551927_552902_INTRON_25_568 intron 29.969002 171.920187 29.969002 142.951185 86.4600935 1.936815701 0.048919 49 19 SH19713 19713 Negative Control 32.293116 163.03869 97.665903 1.98974297 0.087107 49 20 SH3250 3250 Thr1 3' flank 32.418388 199.48512 115.951754 2.064277323 -0.190562 49 21 SH14678 14678 MT 21S rRNA 21S rRNA4 30.317531 193.087848 30.317531 163.770317 97.043924 1.986968349 -0.036765 49 22 SH3906 3906 RNase MRP 5' 30.367459 147.546151 88.956805 1.949179176 0.051162 49 23 SH12108 12108 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7426 7443 719.286919 1235.636909 977.461914 2.990099844 -0.238558 49 24 SH17180 17180 YHR021C_8_148660_147862_INTRON_4_553 intron 34.794781 222.927916 34.794781 189.133135 111.963958 2.049078243 -0.015897 49 25 SH8657 8657 LSR1 / U2 RNA 5' 29.313157 152.167457 90.740307 1.957800244 -0.047153 49 26 SH6119 6119 snR39B 5' 32.618915 185.070965 108.84494 2.036808244 -0.056616 49 27 SH3372 3372 Thr4 5' flank 32.645999 182.349093 107.497546 2.03139855 -0.030619 49 28 SH828 828 Glu2 5' flank 30.489836 164.881176 97.685506 1.98983013 -0.031726 49 29 SH15676 15676 YBR191W_2_606228_607098_INTRON_12_399 intron 32.754545 221.940422 32.754545 190.185877 111.470211 2.047158823 -0.097649 49 30 SH1952 1952 Lys2 5' flank 28.41364 141.112245 84.7629425 1.928206025 -0.053233 49 31 SH15717 15717 YBR220C_2_663261_662457_INTRON_302_722 3' exon 30.707346 191.997019 30.707346 162.289673 96.4985095 1.984520605 -0.002894 49 32 SH2234 2234 Phe1 tRNA-intron/exon 46 62 33.021156 169.9666 101.493878 2.006439847 0.086504 49 33 SH19078 19078 YOR293W_15_867094_867848_INTRON_53_489 intron 35.351504 224.288786 35.351504 189.937282 112.644393 2.051709579 -0.012788 49 34 SH14796 14796 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys 30.980256 203.408155 30.980256 173.427899 102.2040775 2.009468223 -0.053243 49 35 SH14027 14027 MT COB Exon4 31.0693 164.463903 31.0693 134.394603 82.7319515 1.917673269 0.172959 49 36 SH16082 16082 YDR025W_4_491510_492319_INTRON_46_384 intron 33.406407 194.063528 33.406407 161.657121 97.531764 1.989146079 0.159114 49 37 SH11556 11556 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4666 4679 11731.65579 8364.263035 10047.95941 4.002077872 0.367187 49 38 SH21358 21358 YPR187W spliced 31.331861 193.530888 112.4313745 2.05088752 -0.180266 49 39 SH18414 18414 YMR133W_13_536206_537608_INTRON_1243_1358 5' exon 33.688271 215.860401 33.688271 183.17213 108.4302005 2.035150261 -0.000571 49 40 SH6003 6003 snR37 5' 45.175993 173.236795 109.206394 2.038248067 0.357681 49 41 SH16993 16993 YGR118W_7_726968_727725_INTRON_66_385 intron 31.59077 222.981503 31.59077 192.390733 111.9907515 2.049182159 -0.160437 49 42 SH199 199 Arg2 3' flank 29.383216 182.559239 105.9712275 2.025187965 -0.204317 49 43 SH20844 20844 YLR048W spliced 38.612066 186.904935 112.7585005 2.052149292 0.08468 49 44 SH14845 14845 MT tRNA Asp 3' 31.79171 181.327269 31.79171 150.535559 91.1636345 1.959821631 0.130032 49 45 SH2464 2464 Phe5 91 + 3' flank 91 29.543297 136.407209 82.975253 1.918948585 0.055305 49 46 SH18154 18154 YLR426W_12_987057_988108_INTRON_81_151 5' exon 34.185598 202.719608 34.185598 169.53401 101.859804 2.008002836 0.147548 49 47 SH16269 16269 YDR447C_4_1355542_1354818_INTRON_4_317 intron 52.721931 271.002556 52.721931 219.280625 136.001278 2.133542989 -0.070211 49 48 SH121 121 Arg1 5' flank 29.679726 157.707268 93.693497 1.971709449 -0.050329 49 49 SH20085 20085 YCR097W spliced 32.054779 151.900587 91.977683 1.963682465 0.139821 49 50 SH12633 12633 MT_15S MT_15S 55.386186 283.18112 55.386186 228.794934 142.09056 2.152565226 -0.123126 49 51 SH9827 9827 RUF5-1 5' 29.8991 144.205499 87.0522995 1.939780248 0.037193 49 52 SH16287 16287 YDR450W_4_1359912_1360787_INTRON_48_482 5' exon 32.309238 200.492575 32.309238 169.183337 100.7462875 2.003229051 0.050453 49 53 SH15638 15638 YBR186W_2_600511_602318_INTRON_1552_1664 intron 30.048574 186.673487 30.048574 157.624913 93.8367435 1.972372928 -0.024274 49 54 SH1997 1997 Lys3 5' flank 32.437976 191.458675 111.9483255 2.049017602 -0.120539 49 55 SH10073 10073 RUF6 RUF6 211 227 30.12232 145.867617 87.9949685 1.94445784 0.04361 49 56 SH3499 3499 Tyr1 tRNA-exon/intron 36 53 39.491676 192.589912 116.040794 2.064610692 0.03496 49 57 SH6406 6406 snR43 3' 32.417842 153.574006 92.995924 1.968463914 0.154319 49 58 SH20390 20390 YFL039C spliced 32.342006 175.177755 103.7598805 2.016029463 0.016972 49 59 SH9799 9799 RUF4 771-788 + 3' 771 46.211209 214.86122 130.5362145 2.115731014 -0.116164 49 60 SH2391 2391 Phe4 tRNA 6 22 254.383307 478.731075 366.557191 2.564141744 0.037024 49 61 SH2611 2611 Pro3 tRNA 6 22 267.584862 520.576574 394.080718 2.595585186 -0.044727 49 62 SH14650 14650 MT 21S rRNA 21S rRNA4 134.445436 501.179634 134.445436 367.734198 251.089817 2.3998291 -0.212244 49 63 SH12452 12452 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.584672 201.192954 33.584672 168.608282 101.096477 2.004736022 0.126288 49 64 SH4726 4726 snR4 snR4 166 184 37.720662 183.593576 110.657119 2.043979359 0.107087 49 65 SH11856 11856 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6166 6184 32451.39143 27500.65617 29976.0238 4.476774025 -0.207103 49 66 SH16633 16633 YFR024C-A_6_203420_201947_INTRON_48_165 5' exon 32.524165 230.930969 32.524165 199.406804 115.9654845 2.064328747 -0.185998 49 67 SH18200 18200 YML024W_13_225889_226697_INTRON_4_401 intron 30.025488 155.520013 30.025488 126.494525 78.2600065 1.89353988 0.148197 49 68 SH14612 14612 MT 21S rRNA Sce1 endonuc 29.753916 187.266173 29.753916 158.512257 94.1330865 1.973742299 -0.049273 49 69 SH9971 9971 RUF5-1 RUF5-1 661 677 62.706829 296.294337 179.500583 2.254065863 -0.549504 49 70 SH1137 1137 His1 5' flank 29.360429 191.052525 110.206477 2.042207119 -0.251968 49 71 SH21911 21911 copy of SH19564 27.138084 114.116641 70.6273625 1.848972988 0.025817 49 72 SH10162 10162 RUF6 RUF6 656 670 29.191966 161.516007 95.3539865 1.979338854 -0.10405 49 73 SH15780 15780 YDL012C_4_431513_431104_INTRON_46_131 3' exon 33.401966 191.720322 33.401966 159.318356 96.360161 1.983897517 0.173672 49 74 SH7290 7290 snR66 5' 31.32931 168.249075 99.7891925 1.999083508 -0.001497 49 75 SH11981 11981 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6791 6808 50.469317 176.270298 113.3698075 2.054497409 0.385272 49 76 SH14656 14656 MT 21S rRNA 21S rRNA4 35.694625 213.099419 35.694625 178.404794 107.0497095 2.029585493 0.113231 49 77 SH7349 7349 snR68 5' 29.380411 112.659512 71.0199615 1.851380433 0.19935 49 78 SH18167 18167 YLR448W_12_1028848_1029762_INTRON_16_399 intron 31.513242 221.274609 31.513242 190.761367 111.1373045 2.045859859 -0.149029 49 79 SH14785 14785 MT ORF11; tRNA Leu; tRNA Gln 3' 31.480657 182.583768 31.480657 152.103111 91.791884 1.962804284 0.101235 49 80 SH2666 2666 Pro4 5' flank - tRNA8 8 111.033434 298.561088 204.797261 2.311324144 -0.021608 49 81 SH1648 1648 Leu5 106-115 + 3' flank 106 31.292765 156.727033 94.009899 1.973173586 0.064552 49 82 SH21306 21306 YPL218W spliced 54.320899 200.080646 127.2007725 2.104489749 0.151277 49 83 SH15017 15017 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " cox2 / ORF1exon1 28.942096 170.01303 28.942096 142.070934 85.506515 1.931999206 -0.019699 49 84 SH5140 5140 snR11 3' 45.519522 200.044186 122.781854 2.089134187 0.035017 49 85 SH19929 19929 YBL018C spliced 30.819668 148.681377 89.7505225 1.953036986 0.075629 49 86 SH17973 17973 YLR185W_12_522665_523290_INTRON_8_366 3' exon 34.896979 212.155111 34.896979 178.258132 106.5775555 2.027665755 0.087545 49 87 SH8196 8196 snoRNA cluster 3; intergenic 28.639537 158.762423 28.639537 131.122886 79.8812115 1.902444643 0.021048 49 88 SH8618 8618 snR19 / U1 RNA U1 586 601 34.81444 137.09444 85.95444 1.934268315 0.394292 49 89 SH3071 3071 Ser3 tRNA 51 65 32.72497 156.301648 94.513309 1.975492968 0.154816 49 90 SH1006 1006 Gly2 tRNA 21 38 34.769141 182.028257 108.398699 2.03502407 0.047832 49 91 SH319 319 Arg5 5' flank 30.610389 178.965775 104.788082 2.020311891 -0.107631 49 92 SH8009 8009 snoRNA cluster 2 intergenic 28.506785 169.180674 28.506785 141.673889 85.090337 1.929880244 -0.049436 49 93 SH12666 12666 MT_15S MT_15S / 3' 28.441241 186.16188 28.441241 158.720639 93.58094 1.971187403 -0.143976 49 94 SH14636 14636 MT 21S rRNA Sce1 endonuc 30.393557 183.389855 30.393557 153.996298 92.1949275 1.964707027 0.018283 49 95 SH5851 5851 snR35 snR35 441 457 391.755551 634.916417 513.335984 2.710401709 0.085843 49 96 SH10177 10177 RUF6 RUF6 731 752 30.08936 147.481097 88.7852285 1.948340717 0.032426 49 97 SH11584 11584 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4806 4819 14050.50241 6914.494295 10482.49835 4.020464803 0.903502 49 98 SH6303 6303 snR42 snR42 296 313 31.676424 159.381232 95.528828 1.98013445 0.074114 49 99 SH20046 20046 YBR191W spliced 90.447632 275.574285 183.0109585 2.262477096 -0.068947 49 100 SH1837 1837 Leu9 5' flank 31.200638 147.420868 89.310753 1.950903751 0.108022 49 101 SH12075 12075 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7261 7281 30.976487 157.680926 94.3287065 1.974643879 0.038555 49 102 SH7540 7540 snR79 snR79 41 57 42.507226 222.109862 132.308544 2.12158789 -0.243909 49 103 SH11218 11218 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2976 2997 36.424556 169.194426 102.809491 2.012033209 0.226927 49 104 SH6927 6927 snR58 5' - 15 -4 15 30.421522 153.252965 91.8372435 1.96301884 0.024111 50 2 SH19251 19251 YPL129W_16_305297_306136_INTRON_10_114 intron 30.723068 211.407953 30.723068 181.684885 106.2039765 2.026140778 -0.116083 50 3 SH12812 12812 MT COX1 COX1ai1 31.722819 228.672317 31.722819 197.949498 114.8361585 2.060078656 -0.203505 50 4 SH4940 4940 snR9 snR9 106 123 40.199243 164.768938 102.4840905 2.010656451 0.387718 50 5 SH6264 6264 snR42 snR42 101 116 37.919969 183.302559 110.611264 2.043799355 0.11427 50 6 SH18134 18134 YLR406C_12_931752_931062_INTRON_58_406 intron 29.296115 169.022582 29.296115 140.726467 85.011291 1.929476612 0.013316 50 7 SH16350 16350 YDR500C_4_1450856_1450201_INTRON_8_396 intron 41.880907 242.451411 41.880907 201.570504 121.7257055 2.0853823 -0.03394 50 8 SH14780 14780 MT ORF11; tRNA Leu; tRNA Gln tRNA Gln 29.107992 171.05359 29.107992 142.945598 86.026795 1.934633743 -0.012444 50 9 SH4330 4330 telomerase RNA telomerase 686 702 81.813949 268.142364 174.9781565 2.242983837 -0.110447 50 10 SH9597 9597 RUF3 RUF3 371 392 31.108643 152.964551 92.036597 1.963960553 0.07199 50 11 SH16293 16293 YDR450W_4_1359912_1360787_INTRON_48_482 intron 29.027099 178.372523 29.027099 150.345424 89.6862615 1.952725921 -0.057746 50 12 SH2406 2406 Phe4 81-91 + 3' flank 81 29.088859 164.18623 96.6375445 1.985145886 -0.124676 50 13 SH21717 21717 copy of SH11502 54.574909 193.058056 123.8164825 2.092778462 0.233014 50 14 SH7662 7662 snoRNA cluster1 snR78 39.950079 218.95702 39.950079 180.006941 109.97851 2.041307832 0.190681 50 15 SH18917 18917 YOL121C_15_92849_92025_INTRON_21_410 5' exon 40.184767 247.889602 40.184767 208.704835 124.444801 2.094976758 -0.138236 50 16 SH10693 10693 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 351 368 44.736185 178.791703 111.763944 2.048301719 0.279683 50 17 SH12422 12422 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.955279 169.089597 30.955279 139.134318 85.0447985 1.929647756 0.138205 50 18 SH9248 9248 snR6 / U6 RNA 111-112 + 3' 111 27.86739 116.878545 72.3729675 1.85957638 0.060217 50 19 SH19945 19945 YBL040C spliced 27.983587 149.705035 88.844311 1.948629624 -0.131419 50 20 SH19483 19483 ADH1 30.24687 184.896383 107.5716265 2.031697735 -0.163087 50 21 SH1384 1384 Leu1 5' flank - tRNA9 9 36.86256 171.845882 104.354221 2.01851002 0.215007 50 22 SH12996 12996 MT COX1 COX1ai2 32.503161 212.290786 32.503161 180.787625 106.645393 2.027942099 -0.02136 50 23 SH15145 15145 MT tRNA Thr1 reverse complement tRNA 30.309244 189.986193 30.309244 160.676949 95.4930965 1.979971976 -0.021884 50 24 SH9196 9196 snR7 U5 RNA 3' 30.292149 179.833575 105.062862 2.021449227 -0.132082 50 25 SH8313 8313 snoRNA cluster4 intergenic 30.276235 155.580598 30.276235 126.304363 78.290299 1.893707952 0.166885 50 26 SH10631 10631 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 41 60 30.273017 161.227759 95.750388 1.981140542 -0.027139 50 27 SH7248 7248 snR65 snR65 16 36 33.571673 176.245549 104.908611 2.020811137 0.060324 50 28 SH12851 12851 MT COX1 COX1ai1 32.524469 223.527433 32.524469 192.002964 112.2637165 2.050239415 -0.122139 50 29 SH14323 14323 MT VAR1 includes 5’ processing site VAR1 30.403187 175.343605 30.403187 145.940418 88.1718025 1.945329719 0.062466 50 30 SH280 280 Arg4 5- flank - tRNA10 5' flank 10 32.693635 154.48122 93.5874275 1.97121751 0.164928 50 31 SH18950 18950 YOL127W_15_80347_81189_INTRON_14_427 intron 30.594496 228.376162 30.594496 198.781666 114.688081 2.059518286 -0.253969 50 32 SH11006 11006 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1916 1932 6851.588464 4738.913831 5795.251148 3.763072262 0.575275 50 33 SH2751 2751 Pro5 3' flank 30.807914 170.580589 100.6942515 2.003004678 -0.046852 50 34 SH12459 12459 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 2246.049837 4597.411879 2246.049837 2352.362042 2299.20594 3.361577873 0.226996 50 35 SH20798 20798 YKL157W spliced 33.241783 199.473614 116.3576985 2.065795123 -0.163013 50 36 SH2099 2099 Lys4 3' flank 35.585656 183.522678 109.554167 2.039628901 0.061841 50 37 SH8052 8052 snoRNA cluster 2 intergenic 33.436015 205.070423 33.436015 172.634408 103.0352115 2.012985667 0.090408 50 38 SH12166 12166 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7716 7733 557.798042 951.411725 754.6048835 2.877719611 -0.136705 50 39 SH12095 12095 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7361 7386 31.373609 138.124048 84.7488285 1.928133704 0.172155 50 40 SH19110 19110 YOR312C_15_901173_900242_INTRON_2_427 intron 31.472341 182.467002 31.472341 151.994661 91.733501 1.962527969 0.101265 50 41 SH7002 7002 snR60 91-104 + 3' 91 33.849152 168.715596 101.282374 2.005533872 0.140306 50 42 SH774 774 Gln4 3' flank 29.378579 147.955187 88.666883 1.947761442 -0.0198 50 43 SH11594 11594 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4856 4869 31.744509 157.144717 94.444613 1.975177191 0.092141 50 44 SH6138 6138 snR39B snR39B 31 47 52.530274 202.946484 127.738379 2.106321401 0.096974 50 45 SH16291 16291 YDR450W_4_1359912_1360787_INTRON_48_482 intron 41.079731 254.47238 41.079731 214.392649 127.73619 2.106313958 -0.186053 50 46 SH7180 7180 snR64 5' 198.431185 346.182916 272.3070505 2.435058886 0.317549 50 47 SH1507 1507 Leu3 tRNA 6 18 64144.07624 42383.00962 53263.54293 4.726430051 -0.008428 50 48 SH18698 18698 YNL130C_14_381156_379555_INTRON_30_470 exon/intron 34.316104 192.178647 34.316104 158.862543 96.5893235 1.984929124 0.227056 50 49 SH1781 1781 Leu8 5' flank 34.374752 200.16311 117.268931 2.069182966 -0.146817 50 50 SH1815 1815 Leu8 101 + 3' flank 101 29.807756 127.036637 78.4221965 1.894439002 0.129537 50 51 SH6233 6233 snR42 5' 34.515856 180.620691 107.5682735 2.031684198 0.052172 50 52 SH19130 19130 YPL075W_16_412249_415357_INTRON_9_759 intron 34.5862 185.525024 34.5862 151.938824 93.262512 1.969707109 0.286986 50 53 SH15301 15301 YAL001C_1_151163_147591_INTRON_71_160 5'exon 32.312034 215.499641 32.312034 184.187607 108.2498205 2.034427185 -0.059866 50 54 SH20914 20914 YLR333C spliced 37.016664 212.455214 124.735939 2.095991601 -0.228221 50 55 SH14517 14517 MT 21S rRNA 21S rRNA3 561.776288 1585.427427 561.776288 1024.651139 793.2137135 2.899390214 -0.248406 50 56 SH10883 10883 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1301 1316 32035.66703 27860.64315 29948.15509 4.476370073 -0.244483 50 57 SH1145 1145 His1 5' flank 32.286576 149.395457 90.8410165 1.958281985 0.168246 50 58 SH117 117 Arg1 5' flank 32.208763 176.953171 104.580967 2.019452653 -0.00099 50 59 SH21876 21876 copy of SH18251 29.78278 125.34503 77.563905 1.889659666 0.138897 50 60 SH17079 17079 YGR225W_7_945138_946919_INTRON_1184_1276 3' exon 31.951195 221.589029 31.951195 190.637834 111.2945145 2.046473759 -0.131402 50 61 SH20309 20309 YER007C-A spliced 38.646305 196.57043 117.6083675 2.070438222 -0.024777 50 62 SH1174 1174 His1 3' flank 29.252224 174.898757 102.0754905 2.008921476 -0.169116 50 63 SH1509 1509 Leu3 tRNA 16 28 31.250578 163.338886 97.294732 1.988089326 0.023892 50 64 SH2375 2375 Phe4 5' flank 35.411836 174.201009 104.8064225 2.020387897 0.14394 50 65 SH302 302 Arg4 3' flank 37.252716 215.978237 126.6154765 2.102486794 -0.26199 50 66 SH18117 18117 YLR367W_12_855877_857316_INTRON_698_1180 3' exon 34.668179 231.047607 34.668179 197.379428 116.0238035 2.064547098 -0.110303 50 67 SH11717 11717 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5471 5484 37.573271 153.58722 95.5802455 1.980368142 0.427434 50 68 SH7135 7135 snR63 snR63 181 198 31.867304 135.418403 83.6428535 1.92242884 0.220456 50 69 SH11602 11602 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4896 4916 50.862217 211.754922 131.3085695 2.11829307 -0.018593 50 70 SH21156 21156 YNL265C spliced 31.460485 224.129994 127.7952395 2.106514676 -0.4558 50 71 SH17514 17514 YJL136C_10_156971_156248_INTRON_25_484 intron 31.352926 245.670942 31.352926 215.318016 123.335471 2.091087997 -0.370867 50 72 SH9841 9841 RUF5-1 RUF5-1 11 32 29.201387 159.83486 94.5181235 1.975515091 -0.094905 50 73 SH10020 10020 RUF6 5' 646.776225 859.829461 753.302843 2.876969606 0.214223 50 74 SH12139 12139 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7581 7599 31.384506 187.216476 109.300491 2.038622113 -0.12228 50 75 SH4697 4697 snR4 snR4 21 39 42.087166 184.440611 113.2638885 2.054091467 0.171965 50 76 SH17236 17236 YHR079C-A_8_262554_262193_INTRON_114_199 5' exon 33.688996 254.447478 33.688996 221.758482 127.723739 2.106271624 -0.384213 50 77 SH1222 1222 Ile1 71-74 + 3' flank 71 29.504432 154.363001 91.9337165 1.963474817 -0.04526 50 78 SH9998 9998 RUF5-1 3' 29.535695 150.189872 89.8627835 1.953579867 -0.02086 50 79 SH12014 12014 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6956 6978 27.390897 120.862173 74.126535 1.8699737 -0.003101 50 80 SH5181 5181 snR13 snR13 61 77 33.711184 193.16564 113.438412 2.054760138 -0.089397 50 81 SH15652 15652 YBR189W_2_604466_605466_INTRON_8_420 intron 37.838325 230.872165 37.838325 194.03384 115.9360825 2.064218621 -0.011165 50 82 SH4516 4516 U3b (snR17b) U3b 136 153 31.336644 175.956082 103.646363 2.015554067 -0.046565 50 83 SH17857 17857 YKR095W-A_11_625432_625839_INTRON_39_113 intron/exon 31.193051 229.703769 31.193051 199.510718 115.3518845 2.062024694 -0.236936 50 84 SH10530 10530 RUF8 RUF8 576 597 31.059925 134.103231 82.581578 1.916883177 0.174014 50 85 SH9057 9057 snR14 / U4 RNA 5' 33.035119 207.843514 120.4393165 2.080768282 -0.256945 50 86 SH11231 11231 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3041 3064 117.398479 318.046873 217.722676 2.337903664 -0.084071 50 87 SH10699 10699 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 381 398 30.815574 190.62007 110.717822 2.044217534 -0.174597 50 88 SH6006 6006 snR37 5' 28.713078 131.72044 80.216759 1.904265111 0.022554 50 89 SH12966 12966 MT COX1 COX1ai2 28.699727 151.784858 28.699727 124.085131 76.392429 1.883050319 0.071086 50 90 SH4574 4574 U3b (snR17b) U3b 426 440 1878.180998 1076.940993 1477.560996 3.169545418 1.218289 50 91 SH3969 3969 RNase MRP RNaseMRP 261 278 30.750885 171.002876 100.8768805 2.003791644 -0.052828 50 92 SH12877 12877 MT COX1 COX1ai1 30.724217 193.880684 30.724217 164.156467 97.440342 1.9887388 -0.012935 50 93 SH14561 14561 MT 21S rRNA 21S rRNA3 32.739603 192.823079 32.739603 161.083476 96.9115395 1.986375493 0.125034 50 94 SH14077 14077 MT COB Cytbi4 30.588299 214.119033 30.588299 184.530734 107.5595165 2.031648841 -0.140092 50 95 SH18406 18406 YMR125W_13_517538_520445_INTRON_26_347 intron 30.464504 186.659782 30.464504 157.195278 93.829891 1.972341212 0.006466 50 96 SH16251 16251 YDR397C_4_1266887_1266355_INTRON_38_129 intron 30.300669 183.596787 30.300669 154.296118 92.2983935 1.965194142 0.010355 50 97 SH15082 15082 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 36.193075 200.063401 36.193075 164.870326 100.5317005 2.002303029 0.262976 50 98 SH2501 2501 Pro1 5' flank - tRNA8 8 1826.733092 1909.953068 1868.34308 3.271456628 0.279792 50 99 SH701 701 Gln3 tRNA 36 48 45.668878 210.34369 128.006284 2.10723129 -0.075857 50 100 SH10071 10071 RUF6 RUF6 201 218 31.380107 212.74214 122.0611235 2.086577363 -0.344042 50 101 SH6085 6085 snR37 snR37 341 360 29.162995 163.74291 96.4529525 1.984315526 -0.117204 50 102 SH21065 21065 YMR201C spliced 32.86555 182.924516 107.895033 2.033001452 -0.027907 50 103 SH18128 18128 YLR388W_12_898158_898821_INTRON_1_488 intron/exon 30.697144 206.506686 30.697144 176.809542 103.753343 2.016002099 -0.090025 50 104 SH3913 3913 RNase MRP 5' 30.51123 144.611294 87.561262 1.942312012 0.07724 51 2 SH1575 1575 Leu4 tRNA-intron 46 62 31.775999 152.870601 92.3233 1.965311319 0.116537 51 3 SH4465 4465 telomerase RNA 3' 31.709247 190.120994 110.9151205 2.044990755 -0.135927 51 4 SH1417 1417 Leu1 3' flank 33.770296 158.715805 96.2430505 1.98336938 0.198023 51 5 SH3640 3640 Val2 5' flank 27.284123 154.377693 90.830908 1.958233656 -0.208683 51 6 SH10275 10275 RUF7 5' - 2 -14 2 29.324697 163.120992 96.2228445 1.983278191 -0.102646 51 7 SH3248 3248 Thr1 3' flank 31.352567 188.964001 110.158284 2.042017162 -0.139177 51 8 SH11282 11282 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3296 3313 33.380135 169.080491 101.230313 2.00531058 0.112027 51 9 SH20216 20216 YDR064W spliced 30.162002 156.069122 93.115562 1.969022269 -0.00842 51 10 SH2238 2238 Phe1 tRNA 66 80 37.503107 153.566183 95.534645 1.980160894 0.425426 51 11 SH1210 1210 Ile1 tRNA 11 25 86.231784 272.758079 179.4949315 2.25405219 -0.094516 51 12 SH8520 8520 snR19 / U1 RNA U1 96 113 29.175505 150.304509 89.740007 1.952986099 -0.046942 51 13 SH20006 20006 YBR082C spliced 31.396577 196.831332 114.1139545 2.057338756 -0.206329 51 14 SH12777 12777 MT COX1 COX1ai1 29.423273 208.517549 29.423273 180.094276 104.7587745 2.020190409 -0.187958 51 15 SH16783 16783 YGL103W_7_310965_311925_INTRON_50_560 intron 31.721447 205.425386 31.721447 174.703939 103.212693 2.01373311 -0.016493 51 16 SH20240 20240 YDR305C spliced 30.827649 189.22237 110.0250095 2.041491415 -0.161709 51 17 SH11982 11982 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6796 6813 94.118533 256.731822 175.4251775 2.244091925 0.105866 51 18 SH17346 17346 YIL018W_9_316766_317930_INTRON_5_404 intron 30.047319 165.623672 30.047319 136.576353 83.311836 1.920706705 0.089967 51 19 SH20900 20900 YLR306W spliced 30.148812 177.145988 103.6474 2.015558412 -0.12565 51 20 SH15245 15245 MT tRNA fMet tRNA 30.21207 174.357915 30.21207 145.145845 87.6789575 1.942895377 0.053802 51 21 SH15760 15760 YCR031C_3_178212_177492_INTRON_8_314 intron 30.237718 200.683609 30.237718 171.445891 100.8418045 2.003640608 -0.086916 51 22 SH10816 10816 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 966 983 5659.14926 3167.318343 4413.233802 3.644756936 0.967472 51 23 SH8001 8001 snoRNA cluster 2 intergenic 32.383361 203.075772 32.383361 171.692411 102.037886 2.008761452 0.039779 51 24 SH14362 14362 MT ORF9 and ORF10 (hypothetical) ORF9 30.16578 180.477948 30.16578 151.312168 90.738974 1.957793864 0.016916 51 25 SH13695 13695 MT ORF 5 (hypothetical) 3' 33.396631 188.266321 33.396631 155.86969 94.6331605 1.976043345 0.195607 51 26 SH17559 17559 YJL189W_10_75932_76473_INTRON_7_392 intron 1343.89397 3309.744679 1343.89397 1966.850709 1655.37234 3.218895694 -0.169806 51 27 SH84 84 Ala2 56-68 56 68 91.421282 213.029729 152.2255055 2.182487425 0.444172 51 28 SH13819 13819 MT COB Cytbi2 30.179771 212.303462 30.179771 183.123691 106.651731 2.027967909 -0.15745 51 29 SH13843 13843 MT COB Cytbi2 30.259041 166.607621 30.259041 137.34858 83.8038105 1.923263766 0.100361 51 30 SH12784 12784 MT COX1 COX1ai1 28.17386 185.575666 28.17386 158.401806 93.287833 1.969825005 -0.161949 51 31 SH9855 9855 RUF5-1 RUF5-1 81 98 30.485329 155.072526 92.7789275 1.967449348 0.018898 51 32 SH4784 4784 snR5 snR5 91 110 32.821043 148.617472 90.7192575 1.957699487 0.206548 51 33 SH533 533 Cys1 5' flank 30.732243 149.37494 90.0535915 1.954501038 0.065963 51 34 SH21078 21078 YMR230W spliced 64.374075 241.851451 153.112763 2.185011394 -0.116687 51 35 SH12609 12609 MT_15S MT_15S 29.827949 199.69117 29.827949 170.863221 100.345585 2.001498269 -0.108963 51 36 SH17846 17846 YKR094C_11_618384_617630_INTRON_9_376 intron 33.279151 202.548793 33.279151 170.269642 101.7743965 2.007638536 0.099243 51 37 SH18421 18421 YMR133W_13_536206_537608_INTRON_1243_1358 intron 33.378653 219.550563 33.378653 187.17191 110.2752815 2.042478175 -0.048082 51 38 SH19039 19039 YOR234C_15_779404_778554_INTRON_20_546 intron 33.482321 168.824272 33.482321 136.341951 84.912136 1.928969766 0.317783 51 39 SH18379 18379 YMR116C_13_500687_499455_INTRON_538_810 intron 31.331362 211.592393 31.331362 181.261031 106.2961965 2.026517725 -0.077059 51 40 SH14482 14482 MT 21S rRNA 21S rRNA3 40.52731 203.805907 40.52731 164.278597 102.4029535 2.010312483 0.399959 51 41 SH4690 4690 snR4 5' - 3 3 33.828555 176.271318 105.0499365 2.021395794 0.069209 51 42 SH7073 7073 snR62 3' 31.656979 171.696725 101.676852 2.007222092 -0.002655 51 43 SH20807 20807 YKL180W spliced 31.751279 150.306872 91.0290755 1.959180132 0.128623 51 44 SH14324 14324 MT VAR1 includes 5’ processing site VAR1 29.533281 179.875428 29.533281 151.342147 90.437714 1.956349576 -0.027221 51 45 SH11098 11098 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2376 2391 248.399343 459.026949 353.713146 2.548651201 0.080807 51 46 SH4449 4449 telomerase RNA telomerase 1281 1298 31.933094 166.207973 99.0705335 1.995944502 0.046589 51 47 SH16878 16878 YGL187C_7_150529_149708_INTRON_1_342 3' exon 31.968146 191.737375 31.968146 160.769229 96.3686875 1.983935944 0.082442 51 48 SH8730 8730 LSR1 / U2 RNA U2 291 308 29.693268 116.976393 73.3348305 1.865310293 0.189972 51 49 SH8003 8003 snoRNA cluster 2 intergenic 32.037724 190.277611 32.037724 159.239887 95.6388055 1.980634143 0.096217 51 50 SH619 619 Gln1 3' flank 45.991849 232.849802 139.4208255 2.14432765 -0.296515 51 51 SH5318 5318 snR30 snR30 441 455 32.125689 168.37802 100.2518545 2.001092415 0.04465 51 52 SH17880 17880 YLR048W_12_242233_243350_INTRON_91_449 intron 33.328906 174.332778 33.328906 142.003872 87.666389 1.942833118 0.275291 51 53 SH18590 18590 YNL050C_14_534978_534075_INTRON_18_108 3' exon 32.200172 215.393264 32.200172 184.193092 108.196632 2.034213742 -0.06407 51 54 SH13362 13362 MT COX1 intronic 29.890741 193.946985 29.890741 165.056244 97.4734925 1.988886527 -0.072523 51 55 SH8404 8404 snoRNA cluster 5 snR190 32.205828 186.282641 32.205828 155.076813 93.6413205 1.971467529 0.132814 51 56 SH10613 10613 RUF8 3' 36.820718 177.255163 107.0379405 2.029537744 0.161348 51 57 SH1887 1887 Leu9 3' flank 34.438545 187.83193 111.1352375 2.045851782 -0.016575 51 58 SH14165 14165 MT COB intronic 34.356003 222.626171 34.356003 189.270168 111.8130855 2.048492632 -0.032321 51 59 SH13246 13246 MT COX1 COX1-ai4 29.636015 201.694265 29.636015 173.05825 101.3471325 2.005811465 -0.134 51 60 SH1622 1622 Leu5 5' flank 29.512237 164.008105 96.760171 1.985696627 -0.093809 51 61 SH7944 7944 snoRNA cluster1 3' 29.353544 201.799885 29.353544 173.446341 101.3999425 2.006037709 -0.154179 51 62 SH16497 16497 YER117W_5_396765_397649_INTRON_43_513 intron 33.691351 212.460042 33.691351 179.768691 106.730021 2.028286595 0.031188 51 63 SH21783 21783 copy of SH14233 31.166592 154.333686 92.750139 1.967314569 0.068634 51 64 SH11440 11440 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4086 4101 15550.16136 11126.76207 13338.46171 4.125105747 0.277744 51 65 SH13610 13610 MT ATP8/AAP1 3' 30.562941 179.289147 30.562941 149.726206 90.1445735 1.954939588 0.052596 51 66 SH19169 19169 YPL079W_16_406631_407534_INTRON_12_432 intron 32.431376 225.592912 32.431376 194.161536 113.296456 2.054216325 -0.144438 51 67 SH19937 19937 YBL027W spliced 42.94382 206.279182 124.611501 2.095558127 -0.071054 51 68 SH5296 5296 snR30 snR30 331 343 29.683646 157.36148 93.522563 1.9709164 -0.048277 51 69 SH17379 17379 YIL052C_9_257061_256224_INTRON_38_509 intron 29.468003 188.791065 29.468003 160.323062 94.8955325 1.977245767 -0.078513 51 70 SH6095 6095 snR37 3' 28.253757 133.830311 81.042034 1.908710332 -0.023781 51 71 SH10385 10385 RUF7 3' 158.843078 333.59434 246.218709 2.39132105 0.142172 51 72 SH10994 10994 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1856 1875 8465.980334 4789.394098 6627.687216 3.821362004 0.832359 51 73 SH17424 17424 YIL111W_9_155219_155762_INTRON_2_89 3' exon 31.330996 158.799372 31.330996 128.468376 79.899686 1.902545073 0.225769 51 74 SH19180 19180 YPL079W_16_406631_407534_INTRON_12_432 intron 50.507636 249.26767 50.507636 199.760034 125.133835 2.097374755 0.104762 51 75 SH12403 12403 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.525271 201.356451 31.525271 170.83118 101.1782255 2.005087058 -0.005314 51 76 SH7742 7742 snoRNA cluster1 intergenic 31.643843 187.337987 31.643843 156.694144 94.1689935 1.973907929 0.087876 51 77 SH20522 20522 YGR034W spliced 31.743675 163.932917 97.838296 1.99050888 0.04947 51 78 SH6361 6361 snR43 snR43 46 63 31.803111 174.614638 103.2088745 2.013717042 -0.011167 51 79 SH7495 7495 snR71 3' 29.666745 175.533831 102.600288 2.01114858 -0.146494 51 80 SH2713 2713 Pro5 5' flank 29.617705 130.662722 80.1402135 1.903850495 0.094133 51 81 SH1632 1632 Leu5 tRNA-exon/intron 26 42 33.785176 201.860847 117.8230115 2.071230119 -0.177451 51 82 SH822 822 Glu1 3' flank 29.393245 155.665845 92.529545 1.966280427 -0.059904 51 83 SH412 412 Asn1 3' flank 31.362639 200.541911 115.952275 2.064279274 -0.23914 51 84 SH1401 1401 Leu1 tRNA 76 92 581.01438 743.729777 662.3720785 2.821102017 0.315968 51 85 SH20899 20899 YLR306W spliced 31.086635 179.711799 105.399217 2.022837385 -0.082997 51 86 SH3884 3884 RNaseP 3' 28.900557 129.19023 79.0453935 1.897876566 0.052014 51 87 SH15470 15470 YBL087C_2_60732_59815_INTRON_43_546 3' exon 33.001428 210.262303 33.001428 178.260875 105.6311515 2.023792014 0.020615 51 88 SH11471 11471 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4241 4256 13529.40665 13434.98019 13482.19342 4.129760553 -0.202351 51 89 SH4504 4504 U3b (snR17b) U3b 76 92 32.937267 163.472122 98.2046945 1.992132249 0.121331 51 90 SH2638 2638 Pro3 3' flank 35.009948 180.479169 107.7445585 2.032395346 0.070522 51 91 SH4125 4125 SRP RNA SRP RNA 516 530 37.085314 167.37288 102.229097 2.009574525 0.266729 51 92 SH19225 19225 YPL090C_16_378390_377286_INTRON_7_400 intron 39.14887 201.814781 39.14887 163.665911 101.4073905 2.006069607 0.369391 51 93 SH16527 16527 YER131W_5_423587_424307_INTRON_1_361 intron 28.722422 180.579176 28.722422 152.856754 90.789588 1.958036045 -0.093064 51 94 SH1746 1746 Leu7 tRNA 26 41 30.726178 174.399035 102.5626065 2.010989049 -0.074311 51 95 SH20915 20915 YLR344W spliced 47.153143 212.437054 129.7950985 2.113258292 -0.07772 51 96 SH15634 15634 YBR186W_2_600511_602318_INTRON_1552_1664 5' exon 30.460652 173.407685 30.460652 143.947033 87.2038425 1.940535622 0.077527 51 97 SH21758 21758 copy of SH13183 36.389644 166.784643 101.5871435 2.006838749 0.249985 51 98 SH13006 13006 MT COX1 COX1ai2 34.090131 208.511651 34.090131 175.42152 104.7558255 2.020178184 0.086591 51 99 SH465 465 Asp1 3' flank 35.824679 169.766176 102.7954275 2.011973797 0.201341 51 100 SH10963 10963 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1701 1718 593.636531 617.634291 605.635411 2.78221126 0.646444 51 101 SH1114 1114 Gly4 tRNA 46 60 363.845975 688.541567 526.193771 2.721145703 -0.139286 51 102 SH20674 20674 YIL106W spliced 29.057963 151.506438 90.2822005 1.955602136 -0.061772 51 103 SH3994 3994 RNase MRP 3' 28.843479 160.419386 94.6314325 1.976035414 -0.123455 51 104 SH6280 6280 snR42 snR42 181 197 950.158791 1537.857567 1244.008179 3.094823236 -0.231812 52 2 SH4044 4044 SRP RNA SRP RNA 111 128 31.717994 184.440753 108.0793735 2.033742819 -0.084412 52 3 SH13431 13431 MT COX1 intronic 29.52702 175.156526 29.52702 146.629506 88.078263 1.944868741 -0.002171 52 4 SH5830 5830 snR35 snR35 336 353 66.03562 173.819896 119.927758 2.078919715 0.594782 52 5 SH21153 21153 YNL265C spliced 29.420339 153.394999 91.407669 1.960982634 -0.046087 52 6 SH18347 18347 YML124C_13_23684_22049_INTRON_26_323 intron 31.479896 184.622641 31.479896 154.142745 92.8113205 1.967600952 0.090394 52 7 SH19459 19459 CYC1 100.585912 279.43081 190.008361 2.278772712 0.00675 52 8 SH12262 12262 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 378.551384 917.702104 378.551384 540.15072 459.351052 2.662144715 0.312415 52 9 SH12538 12538 MT_ORF6 + ORF7 (hypothetical) ORF6/7 31.306371 205.204109 31.306371 174.897738 103.1020545 2.013267319 -0.042242 52 10 SH16449 16449 YER074W_5_306319_307192_INTRON_4_469 3' exon 31.293442 214.23451 31.293442 183.941068 107.617255 2.03188191 -0.095977 52 11 SH21883 21883 copy of SH18403 31.317252 187.268507 109.2928795 2.038591868 -0.125318 52 12 SH13199 13199 MT COX1 Exon4 31.381118 189.958877 31.381118 159.577759 95.4794385 1.979909856 0.055353 52 13 SH11539 11539 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4581 4594 21013.61397 24627.51943 22820.5667 4.358326425 -0.595484 52 14 SH10392 10392 RUF7 3' 40.143831 169.188748 104.6662895 2.019806828 0.329091 52 15 SH21274 21274 YPL090C spliced 29.62657 168.851654 99.239112 1.99668287 -0.109595 52 16 SH14298 14298 MT VAR1 includes 5’ processing site VAR1 29.770283 185.618581 29.770283 156.848298 93.3092905 1.969924887 -0.039583 52 17 SH18447 18447 YMR142C_13_551206_550205_INTRON_5_406 intron/exon 29.903488 165.247084 29.903488 136.343596 83.123542 1.919724041 0.081191 52 18 SH6554 6554 snR46 3' 30.014081 185.833763 107.923922 2.033117719 -0.182668 52 19 SH20536 20536 YGR183C spliced 31.179287 185.809828 108.4945575 2.035407953 -0.117412 52 20 SH31 31 Ala1 tRNA 51 63 32.31244 159.061072 95.686756 1.980851831 0.11332 52 21 SH944 944 Gly1 5' flank 32.321716 172.81826 102.569988 2.011020305 0.029577 52 22 SH1738 1738 Leu7 5' flank - tRNA3 3 30.12455 164.31001 97.21728 1.987743466 -0.052682 52 23 SH1928 1928 Lys1 3' flank 27.91309 141.993627 84.9533585 1.929180553 -0.095518 52 24 SH10336 10336 RUF7 RUF7 291 310 30.033788 196.278667 113.1562275 2.05367846 -0.254744 52 25 SH1168 1168 His1 61-72 + 3' flank 61 68.041319 238.794015 153.417667 2.185875374 -0.043553 52 26 SH11960 11960 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6686 6699 454.364773 674.303943 564.334358 2.751536492 0.169511 52 27 SH19035 19035 YOR234C_15_779404_778554_INTRON_20_546 intron 38.650191 209.186106 38.650191 171.535915 105.093053 2.021574009 0.272259 52 28 SH16114 16114 YDR064W_4_579453_580447_INTRON_22_560 intron 30.036205 175.746289 30.036205 146.710084 88.3731445 1.946320308 0.033003 52 29 SH10658 10658 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 176 191 47.560693 187.409511 117.485102 2.069982798 0.209681 52 30 SH14504 14504 MT 21S rRNA 21S rRNA3 28.065229 166.320747 28.065229 139.255518 83.6603735 1.922519799 -0.068896 52 31 SH18540 18540 YMR230W_13_732413_733140_INTRON_53_462 intron 30.386046 219.866506 30.386046 190.48046 110.433253 2.043099865 -0.190176 52 32 SH10137 10137 RUF6 RUF6 531 545 32.733133 169.263169 100.998151 2.004313423 0.07434 52 33 SH10862 10862 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1196 1213 644.54014 1114.246481 879.3933105 2.944183158 -0.210821 52 34 SH4762 4762 snR5 5' 30.785678 184.001315 107.3934965 2.030977982 -0.125149 52 35 SH5646 5646 snR34 snR34 151 170 30.891783 159.314502 95.1031425 1.978194868 0.024523 52 36 SH14782 14782 MT ORF11; tRNA Leu; tRNA Gln tRNA / 3' 28.752683 180.119167 28.752683 152.366484 90.5595835 1.956934416 -0.088276 52 37 SH15626 15626 YBR181C_2_592732_591670_INTRON_7_358 intron 31.082102 210.452858 31.082102 180.370756 105.726429 2.024183564 -0.086988 52 38 SH1712 1712 Leu6 3' flank 31.181334 149.555316 90.368325 1.956016233 0.095093 52 39 SH15896 15896 YDL083C_4_307788_306925_INTRON_25_456 5' exon 40.332813 243.778292 40.332813 204.445479 122.389146 2.087742904 -0.088908 52 40 SH20406 20406 YFR031C-A spliced 38.212406 166.555638 102.384022 2.010232186 0.310853 52 41 SH14051 14051 MT COB Cytbi4 29.254039 214.483528 29.254039 186.229489 107.741764 2.032384082 -0.232777 52 42 SH2817 2817 Pro6 3' flank 29.362362 193.197317 111.2798395 2.046416491 -0.263188 52 43 SH21656 21656 copy of SH8991 34.039795 170.907232 102.4735135 2.010611627 0.128814 52 44 SH3134 3134 Ser4 tRNA 76 90 31.831643 174.912534 103.3720885 2.014403291 -0.011223 52 45 SH13877 13877 MT COB intronic 29.591613 222.801873 29.591613 194.21026 111.9009365 2.048833721 -0.254635 52 46 SH10220 10220 RUF6 RUF6 946 962 31.930358 143.319879 87.6251185 1.942628618 0.178855 52 47 SH12122 12122 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7496 7516 31.953654 174.749933 103.3517935 2.014318017 -0.003126 52 48 SH13135 13135 MT COX1 COX1ai3 31.969637 220.287494 31.969637 189.317857 110.643747 2.043926875 -0.118986 52 49 SH20313 20313 YER007C-A spliced 38.914632 198.413563 118.6640975 2.074319341 -0.041952 52 50 SH3937 3937 RNase MRP RNaseMRP 101 115 38.937878 200.80937 119.873624 2.078723635 -0.069023 52 51 SH4235 4235 telomerase RNA telomerase 211 230 29.716694 129.971405 79.8440495 1.902242555 0.105294 52 52 SH7482 7482 snR71 snR71 26 43 29.73443 136.529503 83.1319665 1.919768054 0.068189 52 53 SH10425 10425 RUF8 RUF8 51 71 29.743531 134.777768 82.2606495 1.915192134 0.078897 52 54 SH3034 3034 Ser2 3' flank 32.049912 174.533493 103.2917025 2.014065436 0.003756 52 55 SH17368 17368 YIL052C_9_257061_256224_INTRON_38_509 intron 32.026102 227.487245 32.026102 196.461143 114.2436225 2.057831966 -0.179371 52 56 SH2446 2446 Phe5 tRNA 1 13 35.447449 171.406604 103.4270265 2.014634039 0.172433 52 57 SH8858 8858 LSR1 / U2 RNA U2 931 946 1249.107166 2143.403697 1696.255432 3.229491251 -0.401018 52 58 SH1516 1516 Leu3 tRNA-intron 51 65 29.552878 179.462361 104.5076195 2.019147955 -0.176171 52 59 SH8077 8077 snoRNA cluster 2 snR61/3' 34.05047 213.259445 34.05047 180.208975 107.1297225 2.02990998 0.039761 52 60 SH5600 5600 snR34 5' 32.782859 166.355093 99.568976 1.998124041 0.094785 52 61 SH6108 6108 snR37 3' 31.491358 173.338439 102.4148985 2.010363139 -0.02213 52 62 SH6008 6008 snR37 5' 29.043464 131.806162 80.424813 1.90539006 0.046108 52 63 SH17673 17673 YKL006C-A_11_430270_429836_INTRON_37_177 3' exon 40.051758 223.988129 40.051758 184.936371 112.4940645 2.051129608 0.13364 52 64 SH2321 2321 Phe3 5' flank 33.022721 191.171126 112.0969235 2.049593694 -0.0966 52 65 SH5792 5792 snR35 snR35 146 163 30.501939 148.236825 89.369382 1.951188755 0.056549 52 66 SH1956 1956 Lys2 5' flank - tRNA2 2 30.196211 159.795298 94.9957545 1.977704196 -0.025181 52 67 SH7491 7491 snR71 snR71 71 90 32.061071 156.04957 94.0553205 1.973383368 0.118141 52 68 SH10301 10301 RUF7 RUF7 116 132 29.638664 115.598748 72.618706 1.861048506 0.196004 52 69 SH8810 8810 LSR1 / U2 RNA U2 691 703 455.625684 512.154 483.889842 2.684746505 0.62738 52 70 SH13661 13661 MT ATP6 ATP6 29.267633 164.398387 29.267633 136.130754 82.6991935 1.917501274 0.037143 52 71 SH7767 7767 snoRNA cluster1 snR76 35.504489 233.747189 35.504489 199.2427 117.3735945 2.069570405 -0.113901 52 72 SH7711 7711 snoRNA cluster1 snR77 37.589339 238.171714 37.589339 201.582375 119.585857 2.07767982 -0.098957 52 73 SH9048 9048 snR17a / U3a 3' 29.20164 140.85157 85.026605 1.929554839 0.005821 52 74 SH7957 7957 snoRNA cluster 2 5' 31.410465 182.922002 31.410465 152.511537 91.961001 1.96360369 0.09443 52 75 SH81 81 Ala2 41-56 41 56 748.093033 1037.34296 892.7179965 2.95071429 0.093708 52 76 SH9024 9024 snR17a / U3a U3a 406 420 40.239653 191.947284 116.0934685 2.064807787 0.053858 52 77 SH9727 9727 RUF4 RUF4 411 427 31.819038 132.047615 81.9333265 1.913460588 0.236907 52 78 SH10976 10976 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1766 1781 4759.684894 3698.397895 4229.041395 3.626241936 0.496713 52 79 SH21674 21674 copy of SH9837 29.787788 131.431521 80.6096545 1.90638706 0.101621 52 80 SH14168 14168 MT COB intronic 29.75802 197.093656 29.75802 168.335636 99.046828 1.995840572 -0.098209 52 81 SH10539 10539 RUF8 RUF8 621 637 29.674322 166.934351 98.3043365 1.992572676 -0.096769 52 82 SH7812 7812 snoRNA cluster1 intergenic 31.68329 229.983539 31.68329 199.300249 115.4917695 2.062551035 -0.216474 52 83 SH4802 4802 snR5 snR5 181 197 74.20646 228.216411 151.2114355 2.179584636 0.122532 52 84 SH10776 10776 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 766 783 29.254463 152.348031 90.801247 1.958091813 -0.052273 52 85 SH9997 9997 RUF5-1 3' 73.488203 229.157409 151.322806 2.179904386 0.10587 52 86 SH8753 8753 LSR1 / U2 RNA U2 406 418 35.291277 176.929804 106.1105405 2.025758527 0.113626 52 87 SH11627 11627 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5021 5038 6574.899912 4451.350991 5513.125452 3.741397875 0.621416 52 88 SH3934 3934 RNase MRP RNaseMRP 86 101 47.664418 196.951978 122.308198 2.087455568 0.099327 52 89 SH70 70 Ala2 5' flank - tRNA3 5' flank 3 55.984523 190.264955 123.124739 2.090345323 0.282577 52 90 SH8535 8535 snR19 / U1 RNA U1 171 188 31.941372 152.63656 92.288966 1.96514978 0.128551 52 91 SH16310 16310 YDR450W_4_1359912_1360787_INTRON_48_482 intron/exon 30.89461 205.089414 30.89461 175.194804 103.044707 2.013025689 -0.068717 52 92 SH13369 13369 MT COX1 intronic 28.805758 181.167237 28.805758 153.361479 91.0836185 1.959440276 -0.089722 52 93 SH9291 9291 RUF1 RUF1 31 47 35.017731 187.468704 111.2432175 2.046273542 0.00667 52 94 SH12829 12829 MT COX1 COX1ai1 31.839394 239.896338 31.839394 209.056944 120.448169 2.080800202 -0.295706 52 95 SH2782 2782 Pro6 tRNA 1 13 1071.542654 1522.8194 1297.181027 3.113000588 -0.060504 52 96 SH13257 13257 MT COX1 COX1-ai4 30.562802 198.804133 30.562802 169.241331 99.9020665 1.999574472 -0.053776 52 97 SH382 382 Asn1 5' flank - tRNA9 5' flank 9 32.423902 195.181895 113.8028985 2.056153323 -0.153559 52 98 SH3084 3084 Ser3 3' flank 32.186671 184.713453 108.450062 2.035229805 -0.069333 52 99 SH314 314 Arg5 5' flank 29.90643 203.354443 116.6304365 2.066811901 -0.319596 52 100 SH14763 14763 MT ORF11; tRNA Leu; tRNA Gln ORF11 27.649245 176.866698 27.649245 150.217453 88.933349 1.949064647 -0.159396 52 101 SH13637 13637 MT ATP6 ATP6 79.40399 325.075826 79.40399 246.671836 163.037913 2.212288607 0.026144 52 102 SH7370 7370 snR68 snR68 71 95 29.151922 145.739728 87.445825 1.941739079 -0.024354 52 103 SH19877 19877 Negative Control 32.852641 157.244855 95.048748 1.977946401 0.155982 52 104 SH17470 17470 YIL148W_9_68708_69528_INTRON_9_442 3' exon 54.272881 276.649915 54.272881 223.377034 138.8249575 2.142467549 -0.087571 53 2 SH12439 12439 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 38.10917 211.375276 38.10917 174.266106 106.187638 2.026073961 0.227895 53 3 SH11467 11467 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4221 4238 885.27594 945.402488 915.339214 2.961582068 0.457531 53 4 SH14696 14696 MT tRNA thr2 5' 29.460425 165.714458 29.460425 137.254033 83.357229 1.920943269 0.044566 53 5 SH6887 6887 snR56 snR56 66 85 29.430381 131.893107 80.661744 1.906667608 0.073466 53 6 SH18033 18033 YLR316C_12_766358_765266_INTRON_230_285 intron/exon 31.521199 204.382177 31.521199 173.860978 102.6910885 2.011532757 -0.023417 53 7 SH20973 20973 YML034W spliced 31.479393 194.364012 112.9217025 2.052777417 -0.181887 53 8 SH1478 1478 Leu2 3' flank 33.563002 192.080723 112.8218625 2.052393265 -0.08517 53 9 SH19356 19356 YPL249C-A_16_76239_75699_INTRON_17_254 intron 29.300834 166.996089 29.300834 138.695255 83.9980445 1.924269176 0.024986 53 10 SH12219 12219 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 69.698634 299.967192 69.698634 231.268558 150.483596 2.177489161 0.042052 53 11 SH12195 12195 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7861 7879 29.317898 147.81542 88.566659 1.947270262 -0.023418 53 12 SH17866 17866 YLL050C_12_40413_39803_INTRON_15_193 intron 42.109191 186.070752 42.109191 144.961561 93.535376 1.970975896 0.661501 53 13 SH3542 3542 Tyr2 5' flank 33.694014 174.878958 104.286486 2.018228034 0.077817 53 14 SH12507 12507 MT_ORF6 + ORF7 (hypothetical) 5' 29.537857 177.363005 29.537857 148.825148 89.1815025 1.950274785 -0.013314 53 15 SH17509 17509 YJL136C_10_156971_156248_INTRON_25_484 intron 29.647325 189.579266 29.647325 160.931941 95.289633 1.979045654 -0.068993 53 16 SH20298 20298 YEL012W spliced 30.833079 183.626554 107.2298165 2.030315563 -0.120201 53 17 SH9372 9372 RUF1 RUF1 436 452 32.018002 174.086722 103.052362 2.01305795 0.004498 53 18 SH7460 7460 snR71 5' 29.947271 159.239607 94.593439 1.975861015 -0.039539 53 19 SH64 64 Ala2 5' flank 30.006311 149.041223 89.523767 1.951938348 0.018166 53 20 SH19548 19548 CBP1 2.2 34.37287 201.179314 117.776092 2.07105714 -0.157885 53 21 SH783 783 Glu1 5' flank 30.034316 163.848008 96.941162 1.986508221 -0.056627 53 22 SH19961 19961 YBL059W spliced 40.850017 195.893912 118.3719645 2.073248855 0.016383 53 23 SH8239 8239 snoRNA cluster 3; 3' 34.287172 174.691654 34.287172 141.404482 87.845827 1.943721136 0.337545 53 24 SH7092 7092 snR63 5' 29.907879 146.586668 88.2472735 1.945701296 0.024799 53 25 SH15906 15906 YDL083C_4_307788_306925_INTRON_25_456 intron 30.940848 199.886523 30.940848 169.945675 100.4432615 2.001920806 -0.035014 53 26 SH6926 6926 snR58 5' - 1 -9 10 29.841935 159.000144 94.4210395 1.975068777 -0.045632 53 27 SH16700 16700 YGL031C_7_438393_437938_INTRON_1_456 intron 34.168058 212.50509 34.168058 179.337032 106.752545 2.028378237 0.052076 53 28 SH20895 20895 YLR287C-A spliced 32.073285 162.827591 97.450438 1.988783795 0.075654 53 29 SH3659 3659 Val2 tRNA 36 50 75.739121 204.151571 139.945346 2.14595846 0.366405 53 30 SH20145 20145 YDL115C spliced 36.681322 165.030106 100.855714 2.003700508 0.277394 53 31 SH20072 20072 YCR028C-A spliced 30.302493 173.526831 101.914662 2.008236668 -0.095173 53 32 SH5449 5449 snR32 5' 30.460223 170.678572 100.5693975 2.002465848 -0.068653 53 33 SH16702 16702 YGL031C_7_438393_437938_INTRON_1_456 intron 32.816817 184.037629 32.816817 152.220812 92.5188145 1.966230059 0.186874 53 34 SH9456 9456 RUF2 RUF2 121 138 28.51863 160.977602 94.748116 1.976570583 -0.149775 53 35 SH5179 5179 snR13 snR13 51 67 37.529199 134.023257 85.776228 1.933366944 0.567121 53 36 SH9944 9944 RUF5-1 RUF5-1 526 538 30.941295 164.450028 97.6956615 1.989875278 -0.001589 53 37 SH20088 20088 YDL012C spliced 38.881366 178.328174 108.60477 2.0358489 0.191904 53 38 SH20073 20073 YCR028C-A spliced 30.010673 142.627626 86.3191495 1.936107153 0.053612 53 39 SH20500 20500 YGR001C spliced 33.499573 146.771061 90.135317 1.95489499 0.259143 53 40 SH10996 10996 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1866 1882 30209.0603 30920.18034 30564.62032 4.485219005 -0.486102 53 41 SH20629 20629 YHR123W spliced 32.630661 185.958824 109.2947425 2.038599271 -0.06426 53 42 SH9177 9177 snR7 U5 RNA U5 156 172 38.468674 163.664229 101.0664515 2.004607018 0.348412 53 43 SH274 274 Arg4 5' flank 29.439153 124.290489 76.864821 1.88572762 0.122032 53 44 SH14683 14683 MT 21S rRNA 21S rRNA4 29.518638 194.317433 29.518638 165.798795 97.6587165 1.989711012 -0.102156 53 45 SH5785 5785 snR35 snR35 111 131 31.870622 198.021437 114.9460295 2.060493974 -0.19855 53 46 SH21936 21936 copy of SH19619 31.90142 191.653477 111.7774485 2.048354192 -0.142236 53 47 SH18416 18416 YMR133W_13_536206_537608_INTRON_1243_1358 exon/intron 31.911541 212.900921 31.911541 181.98938 106.9504605 2.029182659 -0.054546 53 48 SH11811 11811 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5941 5963 31.909824 133.237127 82.5734755 1.916840564 0.235919 53 49 SH10371 10371 RUF7 RUF7 466 480 43.430935 205.902665 124.6668 2.095750812 -0.059775 53 50 SH9511 9511 RUF3 5' 31.901117 136.070035 83.985576 1.924204705 0.218948 53 51 SH1362 1362 Ile3 3' flank 30.749286 136.465812 83.607549 1.922245492 0.139235 53 52 SH4699 4699 snR4 snR4 31 48 35.350018 169.049142 102.19958 2.009449111 0.192505 53 53 SH15967 15967 YDL130W_4_229906_230527_INTRON_115_415 intron 29.58663 180.706999 29.58663 152.120369 90.8534995 1.95834166 -0.027631 53 54 SH17886 17886 YLR048W_12_242233_243350_INTRON_91_449 intron 31.86318 206.727274 31.86318 175.864094 103.863637 2.016463526 -0.014884 53 55 SH19434 19434 YPR132W_16_794960_795762_INTRON_66_430 intron/exon 31.825478 216.871744 31.825478 186.046266 108.935872 2.037170914 -0.094984 53 56 SH18702 18702 YNL130C_14_381156_379555_INTRON_30_470 intron 31.774179 172.050055 31.774179 141.275876 86.5250275 1.937141746 0.180316 53 57 SH16383 16383 YER007C-A_5_166884_166236_INTRON_12_114 intron 29.424737 164.436526 29.424737 136.011789 82.718263 1.917601406 0.049099 53 58 SH6832 6832 snR52 snR52 66 83 33.92509 164.594811 99.2599505 1.996774054 0.169618 53 59 SH18494 18494 YMR194W_13_651144_651909_INTRON_17_479 intron 31.558943 194.945346 31.558943 164.386403 97.972673 1.991104957 0.035753 53 60 SH15729 15729 YBR230C_2_680008_679507_INTRON_12_108 exon/intron 31.459134 204.947189 31.459134 174.488055 102.9735945 2.012725873 -0.03076 53 61 SH10546 10546 RUF8 RUF8 656 678 29.071446 144.681348 86.876397 1.938901801 -0.024496 53 62 SH2007 2007 Lys3 5' flank 31.167119 173.278166 102.2226425 2.009547103 -0.041123 53 63 SH2000 2000 Lys3 5' flank 28.726051 156.834718 92.7803845 1.967456168 -0.113614 53 64 SH21223 21223 YOR182C spliced 35.147523 185.1114 110.1294615 2.041903516 0.032456 53 65 SH3440 3440 Trp1 tRNA 31 48 30.431184 166.784493 98.6078385 1.993911439 -0.046987 53 66 SH10269 10269 RUF7 5' 245.668056 442.51451 344.091283 2.536673671 0.130707 53 67 SH700 700 Gln3 tRNA 31 47 262.547737 779.240462 520.8940995 2.716749438 -0.744327 53 68 SH11123 11123 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2501 2516 76.840538 207.692141 142.2663395 2.153102157 0.343788 53 69 SH14940 14940 MT tRNA Asn 3' 31.48857 226.89102 31.48857 196.40245 113.94551 2.056697217 -0.199144 53 70 SH21595 21595 copy of SH6471 29.210489 159.228923 94.219706 1.974141745 -0.091181 53 71 SH10350 10350 RUF7 RUF7 361 382 29.121956 130.511564 79.81676 1.902094094 0.059484 53 72 SH18860 18860 YNR053C_14_723108_721117_INTRON_811_1341 intron 31.206605 216.228213 31.206605 186.021608 108.6141065 2.035886234 -0.118285 53 73 SH8070 8070 snoRNA cluster 2 snR61 56.617609 295.217765 56.617609 239.600156 148.1088825 2.170581105 -0.203022 53 74 SH13232 13232 MT COX1 COX1-ai4 29.261198 197.518034 29.261198 169.256836 99.259017 1.99676997 -0.137057 53 75 SH13105 13105 MT COX1 COX1ai3 31.527466 225.711714 31.527466 195.184248 113.355857 2.054443965 -0.187166 53 76 SH15866 15866 YDL079C_4_314747_312950_INTRON_413_704 intron 31.695743 206.761657 31.695743 176.065914 103.8808285 2.016535405 -0.025898 53 77 SH10188 10188 RUF6 RUF6 786 805 29.706571 171.460708 100.5836395 2.002527346 -0.120133 53 78 SH15754 15754 YCR031C_3_178212_177492_INTRON_8_314 intron 29.815526 190.058328 29.815526 161.242802 95.529164 1.980135977 -0.058816 53 79 SH15002 15002 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.870705 194.416014 29.870705 165.545309 97.708007 1.989930155 -0.076311 53 80 SH11922 11922 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6496 6511 42.818713 149.92973 96.3742215 1.983960883 0.624654 53 81 SH7556 7556 snR79 3' 29.797125 142.600669 86.198897 1.935501709 0.038719 53 82 SH17902 17902 YLR061W_12_263195_263949_INTRON_13_401 intron 27.541058 152.509349 27.541058 125.968291 76.7546745 1.885104834 -0.026151 53 83 SH6417 6417 snR45 5' 33.802578 176.189976 104.996277 2.0211739 0.069068 53 84 SH7663 7663 snoRNA cluster1 snR78 35.746494 222.055821 35.746494 187.309327 111.5279105 2.047383566 0.025417 53 85 SH18796 18796 YNL301C_14_64561_63569_INTRON_113_544 intron 33.449006 213.689322 33.449006 181.240316 107.344661 2.030780449 0.008782 53 86 SH14220 14220 MT ATP9 ATP9 31.194339 194.986862 31.194339 164.792523 97.993431 1.991196964 0.011523 53 87 SH7918 7918 snoRNA cluster1 snR72 34.220616 192.674787 34.220616 159.454171 96.8373935 1.986043091 0.21807 53 88 SH659 659 Gln2 3' flank 28.90755 140.748299 84.8279245 1.928538841 -0.014925 53 89 SH5383 5383 snR31 5' 30.939271 174.01094 102.4751055 2.010618374 -0.059127 53 90 SH18646 18646 YNL112W_14_413636_416278_INTRON_1274_2275 intron 32.990698 213.332758 32.990698 181.34206 107.166379 2.030058557 -0.008692 53 91 SH6858 6858 snR56 5' 28.813287 117.974361 73.393824 1.865659516 0.12106 53 92 SH6092 6092 snR37 376-386 + 3' 376 28.802794 150.935494 89.869144 1.953610605 -0.077028 53 93 SH15639 15639 YBR186W_2_600511_602318_INTRON_1552_1664 intron 30.860625 165.971152 30.860625 136.110527 83.485576 1.921611448 0.148879 53 94 SH15660 15660 YBR189W_2_604466_605466_INTRON_8_420 intron 30.815074 172.746756 30.815074 142.931682 86.873378 1.938886709 0.107268 53 95 SH19208 19208 YPL081W_16_404945_406039_INTRON_8_508 intron 30.732757 192.344988 30.732757 162.612231 96.672494 1.985302923 -0.002813 53 96 SH5915 5915 snR36 snR36 31 47 30.605959 166.66798 98.6369695 1.994039721 -0.035571 53 97 SH15854 15854 YDL079C_4_314747_312950_INTRON_413_704 5' exon 28.383784 173.739423 28.383784 146.355639 87.3697115 1.941360902 -0.083879 53 98 SH17895 17895 YLR048W_12_242233_243350_INTRON_91_449 3' exon 32.259478 207.175736 32.259478 175.916258 104.087868 2.017400113 0.007922 53 99 SH16523 16523 YER131W_5_423587_424307_INTRON_1_361 intron 247.161042 676.768023 247.161042 430.606981 338.8840115 2.530051079 0.184584 53 100 SH19572 19572 AEP2/ATP13 0.6 27.722666 130.650953 79.1868095 1.898652845 -0.042882 53 101 SH3030 3030 Ser2 3' flank 35.452478 161.207485 98.3299815 1.992685957 0.27307 53 102 SH9712 9712 RUF4 RUF4 336 355 29.229093 145.854285 87.541689 1.942214921 -0.019398 53 103 SH15023 15023 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.00228 180.50947 29.00228 152.50719 90.754735 1.957869293 -0.071086 53 104 SH11439 11439 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4081 4097 128.99113 298.410931 213.7010305 2.329806616 0.130721 54 2 SH3052 3052 Ser3 5' flank 31.577341 185.961652 108.7694965 2.036507118 -0.103593 54 3 SH17990 17990 YLR275W_12_694378_694800_INTRON_6_95 3' exon 33.726503 213.130099 33.726503 180.403596 107.0650495 2.029647722 0.026488 54 4 SH21699 21699 copy of SH10874 3430.070784 2342.56557 2886.318177 3.460344204 0.791179 54 5 SH21025 21025 YMR079W spliced 31.583181 197.209038 114.3961095 2.058411255 -0.202466 54 6 SH20443 20443 YGL087C spliced 30.509568 156.120476 93.315022 1.969951563 0.015091 54 7 SH7014 7014 snR60 3' 1378.17282 1674.491699 1526.33226 3.183649083 0.11685 54 8 SH12508 12508 MT_ORF6 + ORF7 (hypothetical) 5' 29.425052 176.186136 29.425052 147.761084 88.593068 1.947399742 -0.015448 54 9 SH12485 12485 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 31.544078 207.648131 31.544078 177.104053 104.3240655 2.018384503 -0.040838 54 10 SH985 985 Gly2 5' flank 31.546448 151.415882 91.481165 1.961331687 0.109236 54 11 SH11536 11536 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4566 4582 16880.19261 13973.44638 15426.8195 4.188276398 0.021634 54 12 SH13904 13904 MT COB Exon3 31.598458 194.270152 31.598458 163.671694 97.635076 1.989605869 0.042519 54 13 SH13642 13642 MT ATP6 ATP6 29.520365 193.21726 29.520365 164.696895 97.10863 1.987257827 -0.096633 54 14 SH8591 8591 snR19 / U1 RNA U1 451 468 31.720233 148.808817 90.264525 1.955517101 0.134707 54 15 SH15988 15988 YDL136W_4_217600_218367_INTRON_4_408 intron 59.738873 287.048704 59.738873 228.309831 144.024352 2.15843593 -0.059351 54 16 SH20314 20314 YER007C-A spliced 36.177374 195.751432 115.964403 2.064324697 -0.062117 54 17 SH2724 2724 Pro5 tRNA 1 13 1143.528783 1742.295644 1442.912214 3.15923991 -0.189473 54 18 SH15770 15770 YCR097W_3_293828_294314_INTRON_106_159 intron 29.864395 191.939172 29.864395 163.074777 96.469586 1.984390415 -0.064569 54 19 SH13763 13763 MT COB intronic 29.905464 180.332554 29.905464 151.42709 90.666277 1.957445783 -0.001686 54 20 SH5970 5970 snR36 snR36 306 325 32.084293 168.398393 100.241343 2.001046877 0.042117 54 21 SH1585 1585 Leu4 tRNA 96 112 76.588641 227.304744 151.9466925 2.181691251 0.157631 54 22 SH20375 20375 YER179W spliced 29.892146 166.126679 98.0094125 1.991267786 -0.077662 54 23 SH4587 4587 U3b (snR17b) 3' 29.848628 142.248452 86.04854 1.934743506 0.044283 54 24 SH4124 4124 SRP RNA SRP RNA 511 523 34.102297 180.371157 107.236727 2.03034355 0.040065 54 25 SH19218 19218 YPL081W_16_404945_406039_INTRON_8_508 intron 27.611026 202.739282 27.611026 176.128256 101.869641 2.008044776 -0.28976 54 26 SH19593 19593 AEP2/ATP13 2.1 29.73893 166.210895 97.9749125 1.991114884 -0.088737 54 27 SH8994 8994 snR17a / U3a U3a 256 270 34.054515 168.670563 101.362539 2.005877481 0.151562 54 28 SH14662 14662 MT 21S rRNA 21S rRNA4 29.82063 179.398074 29.82063 150.577444 90.199037 1.955201901 -0.003023 54 29 SH7414 7414 snR69 5' 32.089113 183.609821 107.849467 2.032818003 -0.062857 54 30 SH4924 4924 snR9 snR9 26 44 30.073306 168.199341 99.1363235 1.996232809 -0.077684 54 31 SH15777 15777 YDL012C_4_431513_431104_INTRON_46_131 intron 30.238625 214.81471 30.238625 185.576085 107.907355 2.033051047 -0.167325 54 32 SH17339 17339 YIL018W_9_316766_317930_INTRON_5_404 intron 30.406563 183.869715 30.406563 154.463152 92.4348575 1.965835776 0.016719 54 33 SH7015 7015 snR60 3' 328.838523 596.245979 462.542251 2.66515141 -0.023652 54 34 SH4426 4426 telomerase RNA telomerase 1166 1188 28.479338 135.357139 81.9182385 1.913380605 -0.01592 54 35 SH3956 3956 RNase MRP RNaseMRP 196 211 35.250845 182.410276 108.8305605 2.036750866 0.060777 54 36 SH2005 2005 Lys3 5' flank 30.89603 148.66104 89.778535 1.953172514 0.080875 54 37 SH1808 1808 Leu8 tRNA 66 80 81.572458 258.060478 169.816468 2.229979804 -0.038111 54 38 SH7954 7954 snoRNA cluster 2 5' 28.839739 181.532463 28.839739 153.692724 91.2662315 1.960310118 -0.089023 54 39 SH17030 17030 YGR183C_7_859471_859058_INTRON_4_216 exon/intron 31.190875 192.889379 31.190875 162.698504 96.9446895 1.986524024 0.024308 54 40 SH6391 6391 snR43 196-209 3' 196 31.313765 161.334543 96.324154 1.983735203 0.040213 54 41 SH18784 18784 YNL301C_14_64561_63569_INTRON_113_544 5' exon 31.443882 218.242099 31.443882 187.798217 109.6210495 2.039893956 -0.125251 54 42 SH15824 15824 YDL064W_4_337486_338069_INTRON_39_148 intron 33.848887 222.428723 33.848887 189.579836 111.7143615 2.048109008 -0.052894 54 43 SH19956 19956 YBL059C-A spliced 29.396441 145.665332 87.5308865 1.942161327 -0.006364 54 44 SH9131 9131 snR7 U5 RNA 5' 29.475042 136.130969 82.8030055 1.918046101 0.052014 54 45 SH11390 11390 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3836 3856 10005.3596 6509.684285 8257.52194 3.916849736 0.560204 54 46 SH1676 1676 Leu6 5' flank 30.692875 143.338097 87.015486 1.93959655 0.096722 54 47 SH18003 18003 YLR287C-A_12_713158_712537_INTRON_4_433 intron 29.542708 179.723872 29.542708 151.181164 90.361936 1.955985527 -0.025697 54 48 SH12592 12592 MT_15S MT_15S 29.526329 169.002141 29.526329 140.475812 85.0010705 1.929424395 0.031191 54 49 SH11407 11407 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3921 3936 38.685901 184.002239 111.34407 2.046667092 0.120121 54 50 SH3526 3526 Tyr2 5' flank 29.483067 144.564243 87.023655 1.93963732 0.005746 54 51 SH3359 3359 Thr3 3' flank 34.044731 184.392978 109.2188545 2.038297617 0.000829 54 52 SH17501 17501 YJL041W_10_365480_368069_INTRON_2_119 3' exon 31.731298 184.762889 31.731298 154.031591 92.8814445 1.967928961 0.107487 54 53 SH12490 12490 MT_tRNA Pro 5' 33.991536 239.51451 33.991536 206.522974 120.257255 2.080111286 -0.222871 54 54 SH1156 1156 His1 tRNA 1 17 272.703591 505.101082 388.9023365 2.589840552 0.028866 54 55 SH13417 13417 MT COX1 intronic 29.336089 193.84687 29.336089 165.510781 97.423435 1.988663438 -0.113622 54 56 SH15727 15727 YBR230C_2_680008_679507_INTRON_12_108 5' exon 31.557664 225.449995 31.557664 194.892331 113.2249975 2.05394232 -0.183493 54 57 SH16720 16720 YGL031C_7_438393_437938_INTRON_1_456 3' exon 33.7667 222.502416 33.7667 189.735716 111.751208 2.048252226 -0.057193 54 58 SH16827 16827 YGL178W_7_167356_170575_INTRON_4_643 intron 81.592981 358.752965 81.592981 278.159984 179.8764825 2.254974386 -0.184804 54 59 SH10797 10797 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 871 890 31.354589 147.570928 89.4627585 1.951642285 0.117413 54 60 SH12841 12841 MT COX1 COX1ai1 29.015391 170.291605 29.015391 142.276214 85.6458025 1.932706083 -0.015497 54 61 SH5192 5192 snR13 116-124 + 3' 116 31.164939 142.333325 86.749132 1.938265138 0.134096 54 62 SH7604 7604 snR189 snR189 91 108 31.024237 169.836417 100.430327 2.001864877 -0.02933 54 63 SH9251 9251 snR6 / U6 RNA 3' 30.840963 185.878147 108.359555 2.034867213 -0.132106 54 64 SH13795 13795 MT COB intronic 28.405444 183.11861 28.405444 155.713166 92.059305 1.964067692 -0.131092 54 65 SH4246 4246 telomerase RNA telomerase 266 280 32.543039 156.884424 94.7137315 1.976412947 0.140613 54 66 SH13891 13891 MT COB intronic 30.068314 232.067106 30.068314 202.998792 116.533553 2.066450988 -0.310175 54 67 SH19601 19601 AEP2/ATP13 2.1 29.784853 130.590272 80.1875625 1.904107012 0.106417 54 68 SH7253 7253 snR65 snR65 41 59 31.654954 177.354668 104.504811 2.019136284 -0.035716 54 69 SH5444 5444 snR31 3' 31.419184 161.285308 96.352246 1.983861843 0.046806 54 70 SH6132 6132 snR39B snR39B 1 18 65.075394 214.668027 139.8717105 2.145729886 0.13795 54 71 SH10975 10975 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1761 1774 43417.84579 35516.18777 39467.01678 4.5962343 -0.235135 54 72 SH1433 1433 Leu2 5' flank 33.22477 192.370392 112.797581 2.052299786 -0.099846 54 73 SH5601 5601 snR34 5' 31.182739 150.484445 90.833592 1.958246489 0.090169 54 74 SH7532 7532 snR79 snR79 1 20 125.300207 296.165036 210.7326215 2.32373177 0.115366 54 75 SH7075 7075 snR62 3' 31.468821 181.816049 106.642435 2.027930053 -0.071982 54 76 SH20114 20114 YDL075W spliced 30.589097 166.40922 98.4991585 1.99343252 -0.035023 54 77 SH21005 21005 YML094W spliced 31.833373 182.170725 107.002049 2.029392094 -0.059164 54 78 SH7993 7993 snoRNA cluster 2 intergenic 34.131254 216.576665 34.131254 183.445411 108.7883325 2.03658232 0.012563 54 79 SH16174 16174 YDR305C_4_1073479_1072737_INTRON_88_176 exon/intron 29.905167 192.050603 29.905167 163.145436 96.5253015 1.984641167 -0.062089 54 80 SH12800 12800 MT COX1 COX1ai1 29.922886 221.686844 29.922886 192.763958 111.343422 2.046664565 -0.228685 54 81 SH6719 6719 snR49 snR49 121 138 29.876504 132.207921 81.0422125 1.908711289 0.103294 54 82 SH12315 12315 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 38.381866 242.374949 38.381866 204.993083 121.6874745 2.085245878 -0.124776 54 83 SH13802 13802 MT COB intronic 29.634719 204.063735 29.634719 175.429016 102.5318675 2.010858868 -0.147906 54 84 SH7259 7259 snR65 snR65 71 88 31.601592 153.09865 92.350121 1.965437469 0.103908 54 85 SH16021 16021 YDL189W_4_122079_123590_INTRON_1_99 intron 31.425784 171.11515 31.425784 140.689366 86.057575 1.934789104 0.160805 54 86 SH11141 11141 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2591 2607 8316.411614 8890.393425 8603.40252 3.934670242 -0.175068 54 87 SH12907 12907 MT COX1 COX1ai2 31.121047 172.851741 31.121047 142.730694 86.9258705 1.939149049 0.128913 54 88 SH8513 8513 snR19 / U1 RNA U1 61 82 28.920969 145.177963 87.049466 1.939766111 -0.038096 54 89 SH3324 3324 Thr3 5' flank 30.927383 180.413692 105.6705375 2.023953916 -0.096558 54 90 SH3072 3072 Ser3 tRNA 56 71 43.373537 174.119083 108.74631 2.036414529 0.321278 54 91 SH21194 21194 YOL121C spliced 47.500862 197.084925 122.2928935 2.087401221 0.095624 54 92 SH14198 14198 MT COB Exon6 30.825568 185.294041 30.825568 155.468473 93.1470205 1.969168968 0.039866 54 93 SH1085 1085 Gly4 5' flank 39.114917 218.771401 128.943159 2.110398306 -0.26208 54 94 SH9950 9950 RUF5-1 RUF5-1 556 573 28.697915 154.479133 91.588524 1.96184106 -0.103388 54 95 SH3567 3567 Tyr2 3' flank 30.702258 163.243725 96.9729915 1.986650793 -0.008607 54 96 SH18505 18505 YMR194W_13_651144_651909_INTRON_17_479 intron 30.593863 199.39001 30.593863 169.796147 100.195005 2.000846071 -0.055203 54 97 SH6179 6179 snR40 5' 53.074359 223.050887 138.062623 2.14007612 -0.101409 54 98 SH8607 8607 snR19 / U1 RNA U1 531 548 30.246322 154.57249 92.409406 1.965716179 0.00518 54 99 SH10561 10561 RUF8 RUF8 731 748 30.021095 155.598492 92.8097935 1.967593806 -0.015691 54 100 SH21295 21295 YPL198W spliced 33.800239 193.028088 113.4141635 2.054667294 -0.085034 54 101 SH3737 3737 Val4 5' flank 33.525387 168.481174 101.0032805 2.00433548 0.123752 54 102 SH7811 7811 snoRNA cluster1 intergenic 33.261838 218.158246 33.261838 185.896408 109.579123 2.03972782 -0.040743 54 103 SH5323 5323 snR30 snR30 466 480 287.529033 510.376438 398.9527355 2.600921447 0.074925 54 104 SH2095 2095 Lys4 3' flank 32.803038 147.467045 90.1350415 1.954893663 0.211705 55 2 SH7620 7620 snR189 snR189 171 183 326.257615 433.244739 379.751177 2.579499129 0.502679 55 3 SH14487 14487 MT 21S rRNA 21S rRNA3 29.429282 183.639975 29.429282 155.210693 92.3199875 1.965295737 -0.054989 55 4 SH7400 7400 snR69 5' 31.59755 168.046591 99.8220705 1.999226574 0.015664 55 5 SH2217 2217 Phe1 5' flank 46.621159 207.114235 126.867697 2.103351056 -0.027931 55 6 SH11636 11636 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5066 5083 318.78801 430.801374 374.794692 2.573793432 0.484398 55 7 SH4340 4340 telomerase RNA telomerase 736 755 29.526845 130.331331 79.929088 1.902704858 0.089641 55 8 SH14923 14923 MT tRNA Tyr 3' 29.538171 187.474233 29.538171 158.936062 94.2371165 1.974221989 -0.066539 55 9 SH2947 2947 Ser1 5' flank 31.680422 172.991552 102.335987 2.010028383 -0.008905 55 10 SH5981 5981 snR36 3' 31.68753 154.07207 92.8798 1.967921272 0.104409 55 11 SH8090 8090 snoRNA cluster 2 3' 33.833796 222.840131 33.833796 190.006335 111.9200655 2.048907956 -0.05722 55 12 SH14554 14554 MT 21S rRNA 21S rRNA3 35.98914 237.177248 35.98914 202.188108 119.088624 2.075870277 -0.136269 55 13 SH12464 12464 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 101.617274 340.323426 101.617274 239.706152 170.661713 2.232136101 0.31151 55 14 SH5820 5820 snR35 snR35 286 300 36.052626 185.395642 110.724134 2.044242292 0.053815 55 15 SH21444 21444 TH304 - control cDNA - flipped; WTP_226 33.952489 152.431191 93.19184 1.969377887 0.249129 55 16 SH6392 6392 snR43 201-209 + 3' 201 27.565094 128.684284 78.124689 1.892788302 -0.042035 55 17 SH4284 4284 telomerase RNA telomerase 456 470 40.497698 172.858762 106.67823 2.028075801 0.288563 55 18 SH19049 19049 YOR234C_15_779404_778554_INTRON_20_546 intron 29.782573 198.508317 29.782573 169.725744 99.7541585 1.998931009 -0.105023 55 19 SH516 516 Asp2 3' flank 38.423056 181.324118 109.873587 2.040893303 0.147229 55 20 SH2680 2680 Pro4 tRNA-intron/exon 66 78 155.672716 301.746004 228.70936 2.359283939 0.304562 55 21 SH12586 12586 MT_15S MT_15S 29.815053 198.135685 29.815053 169.320632 99.5678425 1.998119097 -0.100558 55 22 SH16206 16206 YDR381W_4_1236547_1237993_INTRON_286_1051 5' exon 31.943281 204.164395 31.943281 173.221114 102.5821975 2.011071998 0.005195 55 23 SH6864 6864 snR56 5' 39.432884 191.073191 115.2530375 2.06165238 0.051526 55 24 SH1872 1872 Leu9 101 + 3' flank 101 27.571082 125.25845 76.414766 1.883177288 -0.019226 55 25 SH2720 2720 Pro5 5' flank 33.965321 172.458822 103.2120715 2.013730495 0.11094 55 26 SH6676 6676 snR49 5' 29.66648 178.580108 104.123294 2.017547899 -0.163991 55 27 SH646 646 Gln2 tRNA 16 32 31.832911 154.620183 93.226547 1.969539599 0.111032 55 28 SH8639 8639 snR19 / U1 RNA 3' 29.75836 131.496594 80.627477 1.90648307 0.099153 55 29 SH8176 8176 snoRNA cluster 3; snR70 47.158786 260.343057 47.158786 214.184271 130.6715285 2.116180971 -0.09564 55 30 SH19084 19084 YOR293W_15_867094_867848_INTRON_53_489 intron 30.02339 201.995174 30.02339 172.971784 101.497587 2.006455717 -0.109216 55 31 SH19541 19541 CBP1 1.2 32.374636 157.014098 94.694367 1.976324145 0.130075 55 32 SH17291 17291 YHR141C_8_382752_381991_INTRON_5_445 intron 30.368008 182.840142 30.368008 153.472134 91.920071 1.963410351 0.0193 55 33 SH10146 10146 RUF6 RUF6 576 593 34.933452 195.915604 115.424528 2.062298107 -0.088697 55 34 SH4219 4219 telomerase RNA telomerase 131 147 30.656463 163.422479 97.039471 1.98694842 -0.012509 55 35 SH11701 11701 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5391 5404 23686.05129 24905.856 24295.95364 4.38553395 -0.458119 55 36 SH20896 20896 YLR287C-A spliced 33.075953 164.855734 98.9658435 1.995485331 0.120623 55 37 SH269 269 Arg4 5' flank 30.931721 152.227712 91.5797165 1.961799295 0.064065 55 38 SH16826 16826 YGL178W_7_167356_170575_INTRON_4_643 intron 31.021339 211.405074 31.021339 181.383735 106.202537 2.026134891 -0.096336 55 39 SH21822 21822 copy of SH16002 209.139046 418.940783 314.0399145 2.49698485 0.040292 55 40 SH6695 6695 snR49 snR49 1 18 33.499823 156.630087 95.064955 1.978020447 0.19643 55 41 SH3204 3204 Ser5 3' flank 38.169373 191.981001 115.075187 2.060981689 0.018162 55 42 SH10193 10193 RUF6 RUF6 811 828 31.49719 172.050932 101.774061 2.007637104 -0.014209 55 43 SH16685 16685 YGL030W_7_439087_439634_INTRON_4_233 intron 36.168695 219.725915 36.168695 184.55722 110.3629575 2.04282333 0.065961 55 44 SH20186 20186 YDL191W spliced 38.550763 194.581766 116.5662645 2.066572879 -0.00411 55 45 SH7914 7914 snoRNA cluster1 intergenic/snR72 34.023572 202.413371 34.023572 169.389799 101.7066855 2.007349501 0.143293 55 46 SH709 709 Gln3 3' flank 31.747616 143.119913 87.4337645 1.941679178 0.168075 55 47 SH13120 13120 MT COX1 COX1ai3 31.734918 217.058433 31.734918 186.323515 109.0292165 2.037542891 -0.100911 55 48 SH18285 18285 YML067C_13_140214_139063_INTRON_32_124 intron 29.418816 160.197469 29.418816 131.778653 80.5987345 1.906328223 0.073315 55 49 SH12909 12909 MT COX1 COX1ai2 31.668268 166.049741 31.668268 135.381473 83.5248705 1.921815811 0.207473 55 50 SH21880 21880 copy of SH18400 33.913685 195.839404 114.8765445 2.060231363 -0.10881 55 51 SH21417 21417 Ser4 spliced 36.157391 188.527958 112.3426745 2.050544759 0.019379 55 52 SH15564 15564 YBR084C-A_2_415219_414144_INTRON_3_508 exon/intron 31.559795 217.154728 31.559795 186.594933 109.077364 2.037734634 -0.109996 55 53 SH3313 3313 Thr3 5' flank 31.519162 151.298957 91.4090595 1.960989241 0.108066 55 54 SH18642 18642 YNL112W_14_413636_416278_INTRON_1274_2275 5' exon 33.741327 201.216905 33.741327 168.475578 101.1084525 2.004787463 0.135788 55 55 SH5834 5834 snR35 snR35 356 374 31.412003 164.224822 97.8184125 1.99042061 0.028028 55 56 SH4901 4901 snR9 5' 33.610574 158.98088 96.295727 1.983607016 0.187465 55 57 SH21742 21742 copy of SH12552 29.0265 153.901815 91.4641575 1.961250938 -0.076728 55 58 SH5213 5213 snR30 5' 31.219791 158.440428 94.8301095 1.976946252 0.050899 55 59 SH462 462 Asp1 3' flank 35.657227 174.816717 105.236972 2.022168344 0.146259 55 60 SH1005 1005 Gly2 tRNA 16 34 31.088845 136.387082 83.7379635 1.922922395 0.162814 55 61 SH13302 13302 MT COX1 COX1-ai5a 28.765188 186.679224 28.765188 158.914036 93.839612 1.972386203 -0.121458 55 62 SH4463 4463 telomerase RNA 3' 35.342594 189.957388 112.649991 2.051731161 -0.013197 55 63 SH20421 20421 YGL031C spliced 50.730139 210.624055 130.677097 2.116199478 -0.008611 55 64 SH13185 13185 MT COX1 Exon4 30.513711 177.957124 30.513711 148.443413 89.478562 1.951718996 0.056221 55 65 SH526 526 Cys1 5' flank 13408.40544 12355.51226 12881.95885 4.109981907 -0.080728 55 66 SH3091 3091 Ser3 3' flank 34.328252 199.102791 116.7155215 2.067128615 -0.136207 55 67 SH3852 3852 RNaseP RNaseP 226 238 31.863013 163.201329 97.532171 1.989147891 0.061029 55 68 SH21789 21789 copy of SH14649 40.105405 201.408719 120.757062 2.081912538 -0.058103 55 69 SH5332 5332 snR30 snR30 511 527 30.287533 128.047473 79.167503 1.898546947 0.156989 55 70 SH11111 11111 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2441 2461 29.064521 132.758705 80.911613 1.908010859 0.042023 55 71 SH2756 2756 Pro5 3' flank 32.103304 173.947218 103.025261 2.012943723 0.010286 55 72 SH20984 20984 YML067C spliced 31.030084 171.652523 101.3413035 2.005786486 -0.039784 55 73 SH1889 1889 Lys1 5' flank 56.294274 225.10842 140.701347 2.148298255 -0.076241 55 74 SH1903 1903 Lys1 5' flank 29.100248 164.338023 96.7191355 1.985512406 -0.124613 55 75 SH11776 11776 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5766 5781 39.835953 148.048968 93.9424605 1.972861931 0.559458 55 76 SH8778 8778 LSR1 / U2 RNA U2 531 546 33.696323 130.224319 81.960321 1.913603651 0.368195 55 77 SH4316 4316 telomerase RNA telomerase 616 630 31.764638 177.477896 104.621267 2.019619975 -0.029955 55 78 SH6043 6043 snR37 snR37 131 152 27.632191 173.369042 100.5006165 2.002168726 -0.275378 55 79 SH13294 13294 MT COX1 COX1-ai5a 29.885719 217.553897 29.885719 188.668178 109.2769485 2.038528559 -0.206059 55 80 SH14839 14839 MT tRNA Asp tRNA Asp 29.927754 198.478218 29.927754 169.550464 99.739109 1.998865484 -0.094883 55 81 SH2088 2088 Lys4 3' flank 27.74593 122.865267 75.3055985 1.876827264 0.009762 55 82 SH13988 13988 MT COB intronic 29.818461 164.224813 29.818461 135.406352 82.6124065 1.917045273 0.08057 55 83 SH2042 2042 Lys3 3' flank 31.830676 177.368469 104.5995725 2.01952991 -0.025446 55 84 SH20845 20845 YLR048W spliced 31.658807 180.399586 106.0291965 2.02542547 -0.052783 55 85 SH12223 12223 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.474301 173.039548 31.474301 142.565247 87.019774 1.939617951 0.153277 55 86 SH13080 13080 MT COX1 COX1ai3 33.402085 203.867618 33.402085 171.465533 102.433809 2.010443322 0.099024 55 87 SH5672 5672 snR34 snR34 281 298 29.032424 196.367769 112.7000965 2.051924288 -0.30085 55 88 SH17242 17242 YHR079C-A_8_262554_262193_INTRON_114_199 intron/exon 28.902189 207.438241 28.902189 179.536052 104.2191205 2.017947404 -0.218207 55 89 SH8805 8805 LSR1 / U2 RNA U2 666 685 28.800199 138.343473 83.571836 1.922059943 -0.009331 55 90 SH20988 20988 YML067C spliced 32.87669 186.493357 109.6850235 2.040147333 -0.060106 55 91 SH18573 18573 YNL012W_14_609682_611661_INTRON_106_189 3' exon 32.823745 245.050409 32.823745 213.226664 123.0252045 2.089994096 -0.317176 55 92 SH13211 13211 MT COX1 COX1-ai4 28.654449 173.663303 28.654449 146.008854 87.3316515 1.941171673 -0.062042 55 93 SH6720 6720 snR49 snR49 126 147 30.701794 144.046299 87.3740465 1.941382449 0.093332 55 94 SH20311 20311 YER007C-A spliced 30.673343 159.769426 95.2213845 1.978734492 0.007486 55 95 SH16518 16518 YER117W_5_396765_397649_INTRON_43_513 3' exon 30.621778 195.042492 30.621778 165.420714 98.021246 1.991320219 -0.026973 55 96 SH16824 16824 YGL178W_7_167356_170575_INTRON_4_643 intron 28.478263 205.88455 28.478263 178.406287 103.442275 2.014698063 -0.239416 55 97 SH10764 10764 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 706 726 30.405022 152.93489 91.669956 1.962227023 0.024668 55 98 SH12684 12684 MT tRNA Trp 3' 30.234731 180.54712 30.234731 151.312389 90.77356 1.957959368 0.021653 55 99 SH12867 12867 MT COX1 COX1ai1 28.007821 184.036905 28.007821 157.029084 92.5184525 1.96622836 -0.167165 55 100 SH4657 4657 snR3 3' 27.79935 118.437632 73.118491 1.86402722 0.044138 55 101 SH4767 4767 snR5 snR5 6 23 38.58799 163.598496 101.093243 2.004722129 0.3528 55 102 SH18800 18800 YNL301C_14_64561_63569_INTRON_113_544 intron 28.36854 172.674817 28.36854 145.306277 86.8374085 1.938706854 -0.079403 55 103 SH2571 2571 Pro2 tRNA 91 103 73.982508 210.577942 142.280225 2.153144543 0.283401 55 104 SH5636 5636 snR34 snR34 101 118 30.938158 160.898422 95.91829 1.981901428 0.019622 56 2 SH8763 8763 LSR1 / U2 RNA U2 456 475 46.603249 172.309631 109.45644 2.039241319 0.388612 56 3 SH17575 17575 YJL191W_10_73786_74610_INTRON_11_418 5' exon 31.587542 212.648825 31.587542 182.061283 106.8244125 2.028670513 -0.067437 56 4 SH19076 19076 YOR293W_15_867094_867848_INTRON_53_489 intron 35.923662 200.437416 35.923662 165.513754 100.718708 2.003110146 0.247453 56 5 SH17679 17679 YKL006W_11_431544_432358_INTRON_130_527 intron 95.134963 344.657936 95.134963 250.522973 172.828968 2.237616537 0.163427 56 6 SH21628 21628 copy of SH7733 31.73361 185.944836 108.839223 2.036785433 -0.097527 56 7 SH19526 19526 CBP1 1.2 59.743883 233.450122 146.5970025 2.16612509 -0.105372 56 8 SH10807 10807 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 921 939 4656.185424 3921.338184 4288.761804 3.632331926 0.375295 56 9 SH5893 5893 snR36 5' 31.819132 192.859682 112.339407 2.050532127 -0.155917 56 10 SH7257 7257 snR65 snR65 61 80 29.684359 144.237053 86.960706 1.939323057 0.021842 56 11 SH13765 13765 MT COB intronic 29.686261 177.123362 29.686261 148.437101 89.061681 1.949690888 -0.000798 56 12 SH20265 20265 YDR424C spliced 31.827257 185.410417 108.618837 2.035905148 -0.08914 56 13 SH3873 3873 RNaseP RNaseP 331 343 64.104452 209.208373 136.6564125 2.135630015 0.179021 56 14 SH5278 5278 snR30 snR30 241 257 29.679963 138.692597 84.18628 1.925241319 0.052077 56 15 SH19736 19736 Negative Control 29.682564 161.571455 95.6270095 1.980580574 -0.069741 56 16 SH6978 6978 snR60 5' 36.123354 183.279919 109.7016365 2.040213106 0.080199 56 17 SH12427 12427 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.700931 174.110629 29.700931 145.409698 87.5553145 1.942282512 0.016707 56 18 SH12908 12908 MT COX1 COX1ai2 29.714329 207.937824 29.714329 179.223495 104.468912 2.018987072 -0.164633 56 19 SH17311 17311 YHR203C_8_505526_504472_INTRON_15_283 intron 29.726588 180.242476 29.726588 151.515888 90.621238 1.957229991 -0.014611 56 20 SH589 589 Gln1 5' flank - tRNA3 5' flank 3 75.034269 252.871793 163.953031 2.21471945 -0.073643 56 21 SH12702 12702 MT ORF 8 (hypothetical) ORF8 31.876314 199.157803 31.876314 168.281489 100.0789015 2.00034253 0.030665 56 22 SH8811 8811 LSR1 / U2 RNA U2 696 710 1876.415069 2638.904904 2257.659987 3.353658536 -0.190385 56 23 SH15246 15246 MT tRNA fMet tRNA 31.830163 187.177306 31.830163 156.347143 94.088653 1.973537251 0.101855 56 24 SH16205 16205 YDR381W_4_1236547_1237993_INTRON_286_1051 5' exon 33.937229 207.556026 33.937229 174.618797 104.278013 2.018192747 0.088946 56 25 SH5966 5966 snR36 snR36 286 304 29.628002 155.14869 92.388346 1.965617192 -0.040699 56 26 SH12086 12086 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7316 7333 84.466258 265.028944 174.747601 2.242411222 -0.058011 56 27 SH3078 3078 Ser3 tRNA 86 100 6440.086703 9322.134542 7881.110623 3.896587423 -0.581365 56 28 SH5640 5640 snR34 snR34 121 133 57.709856 208.193326 132.951591 2.123693539 0.108721 56 29 SH20163 20163 YDL130W spliced 68.786879 215.955696 142.3712875 2.153422412 0.170795 56 30 SH2492 2492 Pro1 5' flank 36.494873 179.652033 108.073453 2.033719028 0.128035 56 31 SH3254 3254 Thr1 3' flank 32.345884 166.178833 99.2623585 1.99678459 0.070777 56 32 SH2337 2337 Phe3 tRNA 11 25 347.099864 591.581569 469.3407165 2.671488232 0.055099 56 33 SH6090 6090 snR37 snR37 366 383 37.10332 176.181199 106.6422595 2.027929338 0.180762 56 34 SH19619 19619 RNA14 1.1 30.621064 188.827898 109.724481 2.040303535 -0.166242 56 35 SH20966 20966 YML026C spliced 32.936003 150.544027 91.740015 1.962558807 0.203371 56 36 SH3419 3419 Trp1 5' flank 37.47004 188.3928 112.93142 2.052814789 0.046171 56 37 SH20357 20357 YER117W spliced 30.869805 164.445934 97.6578695 1.989707246 -0.005888 56 38 SH16591 16591 YFL034C-A_6_64931_64242_INTRON_13_333 intron 30.950096 174.993122 30.950096 145.043026 87.996561 1.9444657 0.104463 56 39 SH16815 16815 YGL178W_7_167356_170575_INTRON_4_643 intron 33.28646 211.68046 33.28646 179.394 106.34023 2.026697595 0.020225 56 40 SH5208 5208 snR13 3' 28.91074 136.671693 82.7912165 1.917984264 0.008212 56 41 SH7581 7581 snR189 5' 31.278737 182.987153 107.132945 2.029923043 -0.089831 56 42 SH6042 6042 snR37 snR37 126 145 31.397046 189.311077 110.3540615 2.042788322 -0.140576 56 43 SH1669 1669 Leu6 5' flank 29.227592 147.104845 88.1662185 1.945302214 -0.02616 56 44 SH21374 21374 Leu8_9 spliced 33.852229 179.258213 106.555221 2.027574734 0.041693 56 45 SH13613 13613 MT ATP6 5' 31.614587 183.037375 31.614587 152.422788 92.0186875 1.963876034 0.108345 56 46 SH18213 18213 YML025C_13_225365_224406_INTRON_28_126 intron 33.904331 216.007671 33.904331 183.10334 108.5038355 2.03544509 0.007722 56 47 SH1725 1725 Leu7 5' flank 31.603117 172.020602 101.8118595 2.00779837 -0.007753 56 48 SH14573 14573 MT 21S rRNA 21S / intronic 31.566829 211.031454 31.566829 180.464625 106.015727 2.025370296 -0.058588 56 49 SH19493 19493 YPT1 33.798095 200.630466 117.2142805 2.068980526 -0.163865 56 50 SH16106 16106 YDR064W_4_579453_580447_INTRON_22_560 exon/intron 33.750652 208.425369 33.750652 175.674717 104.7126845 2.019999294 0.072168 56 51 SH17949 17949 YLR128W_12_398531_399434_INTRON_4_97 intron/exon 33.704791 232.918941 33.704791 200.21415 116.9594705 2.068035393 -0.161297 56 52 SH10114 10114 RUF6 RUF6 416 438 130.139136 347.013279 238.5762075 2.377627131 -0.140049 56 53 SH1383 1383 Leu1 5' flank - tRNA5 5 33.606601 154.34841 93.9775055 1.973023913 0.217288 56 54 SH14997 14997 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 35.806305 239.058692 35.806305 204.252387 120.029346 2.07928744 -0.161996 56 55 SH8899 8899 LSR1 / U2 RNA U2 1136 1152 31.224915 133.609026 82.4169705 1.916016647 0.18805 56 56 SH2255 2255 Phe1 3' flank 31.157893 181.735636 106.4467645 2.027132465 -0.090095 56 57 SH14414 14414 MT 21S rRNA 21S rRNA3 46.831771 271.963548 46.831771 226.131777 136.481774 2.135074659 -0.219728 56 58 SH5633 5633 snR34 snR34 86 105 31.034356 145.973878 88.504117 1.946963474 0.104923 56 59 SH10578 10578 RUF8 RUF8 816 832 39.934538 141.894863 90.9147005 1.958634112 0.625266 56 60 SH15835 15835 YDL075W_4_322225_322987_INTRON_58_478 intron 172.433694 528.122929 172.433694 356.689235 264.5614645 2.422526586 0.109925 56 61 SH2279 2279 Phe2 5' flank - tRNA10 10 33.08021 217.617745 125.3489775 2.098120796 -0.356064 56 62 SH15060 15060 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.533032 167.166581 28.533032 139.633549 84.0832905 1.924709699 -0.036192 56 63 SH6174 6174 snR40 5' 30.607777 147.162142 88.8849595 1.948828279 0.069632 56 64 SH14196 14196 MT COB Exon6 30.417472 167.84247 30.417472 138.424998 84.421235 1.926451701 0.105276 56 65 SH4760 4760 snR5 5' 32.364023 162.045839 97.204931 1.987688296 0.097413 56 66 SH5816 5816 snR35 snR35 266 282 32.082748 174.623042 103.352895 2.014322646 0.005149 56 67 SH5110 5110 snR11 snR11 151 165 31.790304 171.126686 101.458495 2.006288416 0.00858 56 68 SH6230 6230 snR42 5' 31.510464 172.256584 101.883524 2.008103958 -0.014635 56 69 SH10961 10961 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1691 1709 21726.24541 21229.78132 21478.01336 4.331994108 -0.316339 56 70 SH11754 11754 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5656 5674 16611.29363 5750.763467 11181.02855 4.048481756 1.413424 56 71 SH13442 13442 MT COX1 intronic 30.962036 186.285364 30.962036 156.323328 93.642682 1.971473844 0.044591 56 72 SH9031 9031 snR17a / U3a U3a 441 456 4712.645857 4751.112239 4731.879048 3.675033635 0.0862 56 73 SH14640 14640 MT 21S rRNA sce1 / intronic 28.87984 157.596542 28.87984 129.716702 79.298271 1.899263718 0.047168 56 74 SH8885 8885 LSR1 / U2 RNA U2 1066 1083 31.07753 172.454881 101.7662055 2.007603582 -0.041666 56 75 SH13344 13344 MT COX1 COX1-ai5a 31.245206 182.117664 31.245206 151.872458 91.558832 1.961700244 0.086885 56 76 SH5819 5819 snR35 snR35 281 295 59.08065 233.31831 146.19948 2.164945828 -0.113305 56 77 SH9004 9004 snR17a / U3a U3a 306 321 33.783369 166.616427 100.199898 2.000867279 0.14939 56 78 SH16345 16345 YDR500C_4_1450856_1450201_INTRON_8_396 intron 30.760766 214.014319 30.760766 184.253553 107.5071595 2.031437387 -0.128054 56 79 SH8110 8110 snoRNA cluster 3; 5' 29.814065 175.920892 29.814065 147.106827 88.460446 1.946749125 0.01541 56 80 SH8922 8922 LSR1 / U2 RNA 3' 32.035189 202.306923 117.171056 2.068820344 -0.228509 56 81 SH779 779 Glu1 5' flank 32.031818 169.51031 100.771064 2.003335844 0.032371 56 82 SH4346 4346 telomerase RNA telomerase 766 785 31.960281 193.07989 112.5200855 2.051230053 -0.15254 56 83 SH17147 17147 YHR012W_8_129473_130440_INTRON_49_167 5' exon 33.977904 165.578313 33.977904 132.600409 83.2891565 1.920588464 0.370817 56 84 SH11000 11000 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1886 1902 11639.77255 4887.243907 8263.508228 3.917164464 1.212199 56 85 SH15178 15178 MT COX3 5' / cox3 31.477301 192.758838 31.477301 162.281537 96.879419 1.986231526 0.044004 56 86 SH15412 15412 YBL059C-A_2_110500_110086_INTRON_35_119 3' exon 35.501683 236.654834 35.501683 202.153151 118.827417 2.074916657 -0.145541 56 87 SH16511 16511 YER117W_5_396765_397649_INTRON_43_513 intron 33.194927 205.602371 33.194927 173.407444 103.3011855 2.014105306 0.074199 56 88 SH15182 15182 MT COX3 cox3 37.192419 230.06091 37.192419 193.868491 115.530455 2.062696484 -0.02149 56 89 SH12612 12612 MT_15S MT_15S 48.476853 265.180206 48.476853 217.703353 133.090103 2.124145761 -0.112506 56 90 SH11830 11830 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6036 6051 31029.38856 31479.18486 31254.28671 4.494909592 -0.479773 56 91 SH4709 4709 snR4 snR4 81 100 30.626043 151.070248 90.8481455 1.958316066 0.049637 56 92 SH13525 13525 MT COX1 intronic 32.645091 191.592854 32.645091 159.947763 96.296427 1.983610173 0.126819 56 93 SH19273 19273 YPL143W_16_282121_282969_INTRON_20_544 intron 32.619391 218.73052 32.619391 187.111129 109.86526 2.040860388 -0.075098 56 94 SH5731 5731 snR34 3' 32.596491 151.147667 91.872079 1.963183544 0.178626 56 95 SH21318 21318 YPL249C-A spliced 38.732552 210.412086 124.572319 2.095421549 -0.178944 56 96 SH1723 1723 Leu7 5' flank 30.439223 162.451198 96.4452105 1.984280665 -0.0219 56 97 SH7255 7255 snR65 snR65 51 70 30.337495 157.452212 93.8948535 1.972641789 -0.003527 56 98 SH15281 15281 MT 9S rRNA 9S 30.196925 204.209767 30.196925 175.012842 102.6048835 2.011168032 -0.110361 56 99 SH20903 20903 YLR316C spliced 32.049127 198.591541 115.320334 2.061905892 -0.19671 56 100 SH4380 4380 telomerase RNA telomerase 936 948 54.075935 228.893976 141.4849555 2.150710263 -0.142213 56 101 SH17666 17666 YKL006C-A_11_430270_429836_INTRON_37_177 intron 45.683668 233.362707 45.683668 188.679039 117.1813535 2.06885851 0.169255 56 102 SH17090 17090 YHL001W_8_104270_105084_INTRON_130_527 intron 31.424126 215.922752 31.424126 185.498626 108.461376 2.03527511 -0.105213 56 103 SH13389 13389 MT COX1 intronic 31.233279 177.951648 31.233279 147.718369 89.475824 1.951705707 0.108559 56 104 SH17989 17989 YLR275W_12_694378_694800_INTRON_6_95 3' exon 33.043252 195.687509 33.043252 163.644257 98.3437545 1.992746784 0.126268 57 2 SH17663 17663 YKL006C-A_11_430270_429836_INTRON_37_177 5' exon 33.729669 188.531084 33.729669 155.801415 94.765542 1.976650451 0.214602 57 3 SH5327 5327 snR30 snR30 486 502 38.089492 208.731782 123.410637 2.091352594 -0.170669 57 4 SH14682 14682 MT 21S rRNA 21S rRNA4 29.566437 161.788245 29.566437 133.221808 81.3941225 1.910593045 0.075369 57 5 SH4777 4777 snR5 snR5 56 73 29.629571 161.601413 95.615492 1.980528264 -0.073599 57 6 SH21072 21072 YMR225C spliced 31.835551 174.404886 103.1202185 2.013343825 -0.00804 57 7 SH16880 16880 YGL189C_7_148970_148233_INTRON_1_368 5' exon 2836.412576 6670.618236 2836.412576 3835.20566 3335.809118 3.523201191 -0.234763 57 8 SH12889 12889 MT COX1 COX1ai1 31.926925 185.467905 31.926925 154.54098 93.2339525 1.969574096 0.117567 57 9 SH6287 6287 snR42 snR42 216 232 29.798571 160.824147 95.311359 1.979144662 -0.05789 57 10 SH2692 2692 Pro4 3' flank 36.268292 191.574735 113.9215135 2.056605746 -0.013369 57 11 SH9016 9016 snR17a / U3a U3a 366 384 27.649675 131.249046 79.4493605 1.900090406 -0.052089 57 12 SH19069 19069 YOR293W_15_867094_867848_INTRON_53_489 intron 29.781827 189.774046 29.781827 160.992219 95.387023 1.979489295 -0.059903 57 13 SH9836 9836 RUF5-1 5' - 7 -14 7 29.756684 128.049041 78.9028625 1.897092759 0.119739 57 14 SH17616 17616 YJR021C_10_469271_468247_INTRON_317_396 intron 31.874996 219.470624 31.874996 188.595628 110.235312 2.042320736 -0.116088 57 15 SH21547 21547 copy of SH4256 29.703044 172.072331 100.8876875 2.003838167 -0.123972 57 16 SH5455 5455 snR32 5' 36.114899 143.637445 89.876172 1.953644567 0.424923 57 17 SH2497 2497 Pro1 5' flank 33.954813 153.957202 93.9560075 1.972924554 0.239137 57 18 SH16430 16430 YER074W_5_306319_307192_INTRON_4_469 intron 29.664834 200.500898 29.664834 171.836064 100.750449 2.00324699 -0.124983 57 19 SH18638 18638 YNL096C_14_444312_443395_INTRON_145_489 intron/exon 29.66545 167.030405 29.66545 138.364955 84.0152025 1.924357878 0.05289 57 20 SH10369 10369 RUF7 RUF7 456 471 36.096813 176.877682 106.4872475 2.027297601 0.141159 57 21 SH16390 16390 YER044C-A_5_239773_238459_INTRON_64_151 exon/intron 31.807028 201.443401 31.807028 170.636373 101.2217005 2.005273629 0.012478 57 22 SH20775 20775 YKL006C-A spliced 33.938563 188.691487 111.315025 2.046553788 -0.041799 57 23 SH3970 3970 RNase MRP RNaseMRP 266 283 31.775906 143.417474 87.59669 1.942487696 0.168241 57 24 SH8106 8106 snoRNA cluster 3; 5' 31.75084 199.80549 31.75084 169.05465 100.402745 2.001745587 0.018635 57 25 SH19989 19989 YBL092W spliced 31.731805 173.246238 102.4890215 2.010677347 -0.00737 57 26 SH19361 19361 YPR028W_16_623522_624197_INTRON_52_184 5' exon 30.66501 211.122949 30.66501 181.457939 106.0614745 2.025557661 -0.118349 57 27 SH655 655 Gln2 tRNA 61 77 40.340284 164.492568 102.416426 2.010369616 0.393852 57 28 SH4089 4089 SRP RNA SRP RNA 336 348 29.707773 153.229674 91.4687235 1.961272618 -0.025037 57 29 SH21667 21667 copy of SH9402 36.29063 164.805865 100.5482475 2.002374505 0.266861 57 30 SH1084 1084 Gly3 3' flank 34.309832 190.789813 112.5498225 2.051344814 -0.047427 57 31 SH4495 4495 U3b (snR17b) U3b 31 52 30.150246 158.734672 94.442459 1.975167286 -0.022948 57 32 SH13134 13134 MT COX1 COX1ai3 30.317548 218.926691 30.317548 189.609143 109.9633455 2.041247944 -0.185143 57 33 SH17348 17348 YIL018W_9_316766_317930_INTRON_5_404 intron 30.464225 160.490809 30.464225 131.026584 80.7454045 1.907117815 0.151317 57 34 SH3734 3734 Val3 3' flank 30.580548 138.495124 84.537836 1.927051127 0.116143 57 35 SH2627 2627 Pro3 tRNA 86 100 37.312405 174.786928 106.0496665 2.025509307 0.200901 57 36 SH1803 1803 Leu8 tRNA-intron/exon 41 58 30.733935 180.479892 105.6069135 2.02369235 -0.108661 57 37 SH14334 14334 MT VAR1 includes 5’ processing site VAR1 30.795139 195.006532 30.795139 165.211393 98.003266 1.991240549 -0.015134 57 38 SH9052 9052 snR17a / U3a 3' 33.091829 184.334096 108.7129625 2.036281331 -0.03264 57 39 SH6053 6053 snR37 snR37 181 197 84.849773 274.738526 179.7941495 2.254775556 -0.123883 57 40 SH13072 13072 MT COX1 COX1ai3 31.05126 213.541016 31.05126 183.489756 107.270508 2.030480337 -0.106263 57 41 SH18708 18708 YNL130C_14_381156_379555_INTRON_30_470 intron 31.162513 223.016696 31.162513 192.854183 112.008348 2.049250392 -0.180848 57 42 SH53 53 Ala2 5' flank 29.016287 149.963429 89.489858 1.951773819 -0.056458 57 43 SH8848 8848 LSR1 / U2 RNA U2 881 895 42.696282 197.20837 119.952326 2.079008674 0.027629 57 44 SH19928 19928 YBL018C spliced 29.164909 144.784878 86.9748935 1.939393906 -0.018293 57 45 SH4374 4374 telomerase RNA telomerase 906 922 33.737349 141.504054 87.6207015 1.942606726 0.303426 57 46 SH21147 21147 YNL246W spliced 33.741368 176.459178 105.100273 2.021603844 0.06432 57 47 SH16472 16472 YER102W_5_362729_363698_INTRON_1_360 intron 35.989932 239.113573 35.989932 204.123641 120.0567865 2.079386715 -0.157004 57 48 SH14360 14360 MT ORF9 and ORF10 (hypothetical) ORF9 31.412629 193.707037 31.412629 163.294408 97.3535185 1.988351652 0.033837 57 49 SH16789 16789 YGL103W_7_310965_311925_INTRON_50_560 intron 33.633552 181.604459 33.633552 148.970907 91.3022295 1.960481383 0.254816 57 50 SH9325 9325 RUF1 RUF1 201 220 39.245255 183.440505 111.34288 2.046662451 0.136936 57 51 SH1164 1164 His1 tRNA 41 56 73269.33706 32868.7567 53069.04688 4.724841288 0.567568 57 52 SH20780 20780 YKL006W spliced 49.312965 213.956562 131.6347635 2.119370598 -0.062594 57 53 SH5077 5077 snR11 5' - 7 -14 7 51.49498 224.341733 137.9183565 2.139622073 -0.136604 57 54 SH6050 6050 snR37 snR37 166 188 31.12989 158.515358 94.822624 1.976911969 0.044531 57 55 SH1079 1079 Gly3 3' flank 31.064434 186.848301 108.9563675 2.037252616 -0.131237 57 56 SH15155 15155 MT tRNA Val 5' 28.761292 178.147009 28.761292 150.385717 89.5735045 1.952179566 -0.077221 57 57 SH13646 13646 MT ATP6 ATP6 28.702855 150.012418 28.702855 122.309563 75.506209 1.877982666 0.083255 57 58 SH6292 6292 snR42 snR42 241 255 80.172514 242.502745 161.3376295 2.207735672 0.068758 57 59 SH7589 7589 snR189 snR189 16 30 35.287035 186.002903 110.644969 2.043931671 0.029094 57 60 SH18965 18965 YOL127W_15_80347_81189_INTRON_14_427 3' exon 30.788335 200.015117 30.788335 170.226782 100.5075585 2.002198723 -0.045931 57 61 SH12995 12995 MT COX1 COX1ai2 30.729058 200.601277 30.729058 170.872219 100.8006385 2.003463283 -0.053379 57 62 SH20638 20638 YHR141C spliced 32.852677 162.024882 97.4387795 1.988731835 0.125559 57 63 SH850 850 Glu2 tRNA 16 30 1552.07554 1508.132888 1530.104214 3.184721011 0.43733 57 64 SH20959 20959 YML025C spliced 30.332802 179.635045 104.9839235 2.021122799 -0.128453 57 65 SH2825 2825 Pro7 5' flank 34.460004 166.15827 100.309137 2.001340494 0.189259 57 66 SH16877 16877 YGL187C_7_150529_149708_INTRON_1_342 3' exon 32.011634 186.703972 32.011634 155.692338 93.851986 1.972443467 0.117053 57 67 SH4410 4410 telomerase RNA telomerase 1086 1105 27.452658 121.212069 74.3323635 1.871177942 -0.000865 57 68 SH21364 21364 Ile2_3 spliced 29.32683 164.686727 97.0067785 1.986802082 -0.110233 57 69 SH16709 16709 YGL031C_7_438393_437938_INTRON_1_456 intron 29.095688 196.018784 29.095688 167.923096 98.509392 1.993477639 -0.14242 57 70 SH4635 4635 snR3 snR3 91 108 81.42161 287.578036 184.499823 2.265995954 -0.251452 57 71 SH18567 18567 YNL012W_14_609682_611661_INTRON_106_189 exon/intron 41.288449 215.285298 41.288449 174.996849 108.142649 2.033997004 0.275471 57 72 SH2408 2408 Phe4 91 + 3' flank 91 32.897244 140.975528 86.936386 1.939201582 0.254125 57 73 SH7158 7158 snR63 3' 26.69338 146.276041 86.4847105 1.936939336 -0.212774 57 74 SH15088 15088 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.86131 172.713384 28.86131 144.852074 86.856692 1.938803285 -0.040694 57 75 SH3559 3559 Tyr2 tRNA 66 78 56.330181 195.526677 125.928429 2.100123785 0.226852 57 76 SH888 888 Glu3 5' flank 29.190546 182.678692 105.934619 2.025037909 -0.21728 57 77 SH6100 6100 snR37 3' 31.505307 155.546056 93.5256815 1.970930881 0.084727 57 78 SH6164 6164 snR39B 3' 29.561728 142.787575 86.1746515 1.935379536 0.020994 57 79 SH9899 9899 RUF5-1 RUF5-1 301 318 29.700393 132.630332 81.1653625 1.909370733 0.088357 57 80 SH4624 4624 snR3 snR3 36 52 209.794065 361.454673 285.624369 2.455795258 0.303249 57 81 SH15893 15893 YDL082W_4_308423_309387_INTRON_5_369 intron/exon 29.79756 192.759511 29.79756 163.961951 96.8797555 1.986233034 -0.073614 57 82 SH8577 8577 snR19 / U1 RNA U1 381 398 31.896284 190.506251 111.2012675 2.046109737 -0.132297 57 83 SH9956 9956 RUF5-1 RUF5-1 586 602 31.783016 173.476125 102.6295705 2.011272511 -0.005703 57 84 SH8931 8931 snR17a / U3a 5' 31.624103 156.866817 94.24546 1.974260439 0.085688 57 85 SH5048 5048 snR10 3' 29.318897 158.275341 93.797119 1.972189499 -0.078627 57 86 SH4650 4650 snR3 snR3 166 180 33.340485 185.584699 109.462592 2.039265728 -0.035082 57 87 SH11276 11276 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3266 3283 31.036359 140.906186 85.9712725 1.934353355 0.13368 57 88 SH5142 5142 snR11 3' 32.931349 167.750857 100.341103 2.001478871 0.094745 57 89 SH9933 9933 RUF5-1 RUF5-1 471 490 31.727588 140.166434 85.947011 1.934230778 0.183657 57 90 SH14456 14456 MT 21S rRNA 21S rRNA3 32.628102 216.301107 32.628102 184.673005 108.6505535 2.036031943 -0.052646 57 91 SH6307 6307 snR42 snR42 316 332 43.850946 204.672901 124.2619235 2.094338072 -0.040181 57 92 SH17607 17607 YJL205C-A_10_50443_50139_INTRON_33_175 intron 34.527137 183.978438 34.527137 150.451301 92.489219 1.966091112 0.293787 57 93 SH18368 18368 YMR079W_13_424988_426058_INTRON_10_165 intron 28.351034 183.147119 28.351034 155.796085 92.0735595 1.964134933 -0.135503 57 94 SH8006 8006 snoRNA cluster 2 intergenic 30.382207 164.093766 30.382207 134.711559 82.546883 1.916700679 0.124024 57 95 SH2930 2930 Pro8 3' flank 34.455614 216.118712 125.287163 2.097906575 -0.312189 57 96 SH192 192 Arg2 3' flank 28.2799 147.789846 88.034873 1.944654742 -0.099201 57 97 SH15577 15577 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.231268 178.971332 29.231268 150.740064 89.985666 1.954173335 -0.045324 57 98 SH13520 13520 MT COX1 intronic 28.112387 185.872133 28.112387 158.759746 93.4360665 1.970514547 -0.168311 57 99 SH14999 14999 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.005523 179.839528 30.005523 150.834005 90.419764 1.956263369 0.008425 57 100 SH6785 6785 snR50 3' 27.833794 125.77191 76.802852 1.885377347 -0.003113 57 101 SH1045 1045 Gly3 5' flank 29.679677 143.457194 86.5684355 1.937359569 0.025735 57 102 SH18209 18209 YML024W_13_225889_226697_INTRON_4_401 3' exon 29.515947 174.659223 29.515947 146.143276 87.8296115 1.943640962 -0.000373 57 103 SH6761 6761 snR50 5' 75.512965 258.759773 167.136369 2.223070963 -0.114026 57 104 SH20167 20167 YDL136W spliced 31.216004 195.295802 113.255903 2.054060847 -0.200023 58 2 SH1909 1909 Lys1 tRNA 1 13 38.128547 150.731847 94.430197 1.975110896 0.476675 58 3 SH353 353 Arg5 3' flank 368.409883 631.489016 499.9494495 2.698926095 0.019329 58 4 SH15350 15350 YBL018C_2_186436_185960_INTRON_48_122 3' exon 62.077376 299.481175 62.077376 238.403799 150.2405875 2.176787273 -0.117597 58 5 SH5757 5757 snR35 5' 66.506968 159.069983 112.7884755 2.052264727 0.794569 58 6 SH7464 7464 snR71 5' 34.098093 137.224608 85.6613505 1.932784917 0.350376 58 7 SH10140 10140 RUF6 RUF6 546 563 149.40725 355.591468 252.499359 2.40226028 -0.039265 58 8 SH19730 19730 Negative Control 32.041708 185.86769 108.954699 2.037245965 -0.085252 58 9 SH4795 4795 snR5 snR5 146 168 29.905747 163.999955 96.952851 1.986560584 -0.06628 58 10 SH11828 11828 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6026 6043 12036.86381 12107.83128 12072.34754 4.08179173 -0.18818 58 11 SH13662 13662 MT ATP6 ATP6 29.894384 168.267242 29.894384 139.372858 84.633621 1.927542922 0.063425 58 12 SH10618 10618 RUF8 3' 29.863284 179.774525 104.8189045 2.020439616 -0.158404 58 13 SH2172 2172 Met2 5' flank - tRNA6 6 31.973648 173.30328 102.638464 2.011310144 0.006489 58 14 SH19599 19599 AEP2/ATP13 2.1 31.922096 185.639823 108.7809595 2.036552885 -0.087663 58 15 SH19278 19278 YPL143W_16_282121_282969_INTRON_20_544 intron 31.871081 217.225664 31.871081 186.354583 109.112832 2.037875828 -0.096063 58 16 SH19449 19449 CYC1 38.263338 178.58421 108.423774 2.03512452 0.177443 58 17 SH4446 4446 telomerase RNA telomerase 1266 1278 72.672373 227.489492 150.0809325 2.176325519 0.111187 58 18 SH20371 20371 YER133W spliced 48.929893 195.851992 122.3909425 2.087749279 0.12858 58 19 SH9002 9002 snR17a / U3a U3a 296 308 31.759226 167.521572 99.640399 1.998435458 0.028384 58 20 SH15208 15208 MT COX3 cox3 31.754873 184.189819 31.754873 153.434946 92.5949095 1.966587112 0.112172 58 21 SH9391 9391 RUF1 RUF1 531 548 59.654395 236.842329 148.248362 2.170989904 -0.136457 58 22 SH5750 5750 snR35 5' 31.743566 176.462777 104.1031715 2.01746396 -0.025368 58 23 SH15422 15422 YBL072C_2_89435_88518_INTRON_1_308 5' exon 29.592968 175.573777 29.592968 146.980809 88.2868885 1.945896211 0.000657 58 24 SH4487 4487 U3b (snR17b) 5' - 10 10 29.577244 190.290015 109.9336295 2.041130567 -0.234151 58 25 SH1574 1574 Leu4 tRNA-intron 41 57 33.838422 191.46031 112.649366 2.051728752 -0.06992 58 26 SH18235 18235 YML026C_13_223828_222987_INTRON_48_448 intron 29.576764 195.283679 29.576764 166.706915 98.1418395 1.991854194 -0.102499 58 27 SH19879 19879 Negative Control 33.894857 184.622799 109.258828 2.038456538 -0.006559 58 28 SH6852 6852 snR52 3' 29.696757 156.109823 92.90329 1.968031094 -0.040892 58 29 SH4896 4896 snR8 3' 29.816195 192.375678 111.0959365 2.045698174 -0.230185 58 30 SH4713 4713 snR4 snR4 101 115 34.294533 160.775202 97.5348675 1.989159898 0.213721 58 31 SH19019 19019 YOR182C_15_678792_678190_INTRON_4_414 intron 30.130245 198.021582 30.130245 168.891337 99.510791 1.997870178 -0.07832 58 32 SH14772 14772 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu 30.28822 183.034925 30.28822 153.746705 92.0174625 1.963870253 0.012392 58 33 SH2214 2214 Phe1 5' flank 30.423245 192.913037 111.668141 2.047929286 -0.210124 58 34 SH18442 18442 YMR142C_13_551206_550205_INTRON_5_406 intron 30.526538 210.072766 30.526538 180.546228 105.536383 2.023402206 -0.121692 58 35 SH17909 17909 YLR061W_12_263195_263949_INTRON_13_401 intron 30.599779 189.597953 30.599779 159.998174 95.2989765 1.979088236 0.001344 58 36 SH20019 20019 YBR089C-A spliced 30.653513 180.799733 105.726623 2.024184361 -0.115358 58 37 SH18282 18282 YML067C_13_140214_139063_INTRON_32_124 5' exon 50.693308 270.326309 50.693308 220.633001 135.6631545 2.132461911 -0.111149 58 38 SH12618 12618 MT_15S MT_15S 32.9803 226.661206 32.9803 194.680906 113.830603 2.056259036 -0.12884 58 39 SH19707 19707 Negative Control 30.834538 172.483602 101.65907 2.007146132 -0.056509 58 40 SH13705 13705 MT tRNAGlu (and 5' processing site for COB) tRNA 30.925349 174.197709 30.925349 144.27236 87.5988545 1.942498427 0.107119 58 41 SH9026 9026 snR17a / U3a U3a 416 431 39.990321 198.301235 119.145778 2.076078657 -0.024294 58 42 SH10602 10602 RUF8 RUF8 936 951 33.369817 155.065126 94.2174715 1.974131445 0.199364 58 43 SH1884 1884 Leu9 3' flank 28.956572 134.457245 81.7069085 1.912258779 0.024279 58 44 SH20277 20277 YDR450W spliced 31.266094 142.823991 87.0450425 1.939744042 0.138034 58 45 SH13937 13937 MT COB Cytbi3 31.296157 234.820051 31.296157 204.523894 117.9100255 2.071550733 -0.27486 58 46 SH4057 4057 SRP RNA SRP RNA 176 194 29.04161 144.456542 86.749076 1.938264858 -0.025447 58 47 SH13350 13350 MT COX1 intronic 29.024628 158.83015 29.024628 130.805522 79.915075 1.902628711 0.05068 58 48 SH17798 17798 YKL186C_11_93537_92746_INTRON_71_233 3' exon 31.249926 198.832632 31.249926 168.582706 99.916316 1.999636413 -0.008252 58 49 SH3386 3386 Thr4 tRNA 16 30 33.467445 186.348869 109.908157 2.041029925 -0.037463 58 50 SH220 220 Arg3 5' flank 90.03005 284.248407 187.1392285 2.272164835 -0.133276 58 51 SH14969 14969 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 33.390551 208.596929 33.390551 176.206378 104.7984645 2.020354919 0.054219 58 52 SH14714 14714 MT tRNA cys; tRNA his 5' 28.85988 183.205424 28.85988 155.345544 92.102712 1.964272418 -0.096239 58 53 SH13412 13412 MT COX1 intronic 28.815965 193.935435 28.815965 166.11947 97.4677175 1.988860796 -0.15372 58 54 SH13163 13163 MT COX1 intronic 28.763267 211.995905 28.763267 184.232638 106.4979525 2.027341258 -0.253451 58 55 SH18016 18016 YLR287C-A_12_713158_712537_INTRON_4_433 3' exon 33.167933 200.490892 33.167933 168.322959 100.745446 2.003225424 0.104668 58 56 SH20249 20249 YDR381C-A spliced 28.643202 181.331577 104.9873895 2.021137137 -0.245145 58 57 SH17541 17541 YJL177W_10_90783_91654_INTRON_310_626 intron 51.990788 277.322666 51.990788 226.331878 139.161333 2.14351858 -0.148114 58 58 SH5875 5875 snR35 3' 134.148905 281.549765 207.849335 2.317748639 0.279293 58 59 SH21491 21491 copy of SH2039 32.940419 188.849084 110.8947515 2.044910992 -0.078968 58 60 SH3853 3853 RNaseP RNaseP 231 243 30.684975 175.344591 103.014783 2.012899552 -0.082313 58 61 SH2994 2994 Ser2 5' flank 72.846797 217.39898 145.1228885 2.161735914 0.205423 58 62 SH12797 12797 MT COX1 COX1ai1 30.554928 175.747671 30.554928 146.192743 88.3738355 1.946323704 0.071399 58 63 SH4168 4168 SRP RNA 3' 28.238087 153.963869 91.100978 1.959523039 -0.134212 58 64 SH16172 16172 YDR305C_4_1073479_1072737_INTRON_88_176 5' exon 30.263916 212.297468 30.263916 183.033552 106.648734 2.027955704 -0.151745 58 65 SH9820 9820 RUF5-1 5' 38.735633 187.001205 112.868419 2.052572442 0.085819 58 66 SH6565 6565 snR47 5' 55.702864 222.027676 138.86527 2.142593643 -0.054951 58 67 SH13757 13757 MT COB intronic 29.536407 204.638405 29.536407 176.101998 102.8192025 2.012074231 -0.158008 58 68 SH3462 3462 Trp1 3' flank 41.981696 213.069265 127.5254805 2.105596969 -0.15832 58 69 SH9003 9003 snR17a / U3a U3a 301 315 35.339874 178.532922 106.936398 2.029125551 0.100054 58 70 SH12154 12154 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7656 7673 684.312528 1193.663735 938.9881315 2.972660103 -0.246179 58 71 SH7078 7078 snR62 3' 28.724971 166.771135 97.748053 1.990108116 -0.163456 58 72 SH497 497 Asp2 tRNA 46 61 93.304992 246.88931 170.097151 2.23069704 0.173191 58 73 SH2145 2145 Met1 3' flank 32.813035 192.205134 112.5090845 2.051187591 -0.113334 58 74 SH18853 18853 YNR053C_14_723108_721117_INTRON_811_1341 exon/intron 32.899619 200.925357 32.899619 169.025738 100.9626785 2.004160864 0.08525 58 75 SH12893 12893 MT COX1 cox1ai1/intronic 28.879113 180.627233 28.879113 152.74812 90.8136165 1.958150971 -0.081197 58 76 SH20005 20005 YBR082C spliced 29.050517 183.392258 106.2213875 2.02621197 -0.23023 58 77 SH11075 11075 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2261 2278 294.889467 448.423876 371.6566715 2.570141933 0.323622 58 78 SH14575 14575 MT 21S rRNA intronic 29.417293 189.946811 29.417293 161.529518 95.4734055 1.979882414 -0.088161 58 79 SH19293 19293 YPL175W_16_218629_220087_INTRON_18_117 intron 29.562954 218.726029 29.562954 190.163075 109.8630145 2.040851511 -0.234377 58 80 SH17035 17035 YGR183C_7_859471_859058_INTRON_4_216 intron 31.797848 218.979103 31.797848 188.181255 109.9895515 2.041351431 -0.115279 58 81 SH21711 21711 copy of SH11291 29.686313 144.785179 87.235746 1.940694479 0.019025 58 82 SH20968 20968 YML026C spliced 29.651632 160.014374 94.833003 1.976959503 -0.06406 58 83 SH12217 12217 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.829758 223.75299 33.829758 190.923232 112.376495 2.050675482 -0.065487 58 84 SH3988 3988 RNase MRP 3' 33.670292 151.58286 92.626576 1.96673561 0.239197 58 85 SH1735 1735 Leu7 5' flank 31.360061 170.130097 100.745079 2.003223842 -0.010958 58 86 SH21048 21048 YMR142C spliced 31.15706 173.561965 102.3595125 2.010128209 -0.04339 58 87 SH2950 2950 Ser1 5' flank - tRNA1 1 28.865423 178.547983 103.706703 2.015806828 -0.21498 58 88 SH13359 13359 MT COX1 intronic 34.899244 236.082745 34.899244 202.183501 118.5413725 2.073869951 -0.157977 58 89 SH6457 6457 snR45 snR45 131 148 105.083138 300.15598 202.619559 2.306681366 -0.086492 58 90 SH21474 21474 copyu of SH1441 34.538199 199.809959 117.174079 2.068831549 -0.139615 58 91 SH7024 7024 snR62 5' 30.330728 192.199916 111.265322 2.046359829 -0.207523 58 92 SH9505 9505 RUF3 5' 60.969588 235.918929 148.4442585 2.171563405 -0.110589 58 93 SH3192 3192 Ser5 81-82 + 3' flank 81 30.233392 144.789892 87.511642 1.942065833 0.057256 58 94 SH5779 5779 snR35 snR35 81 100 32.258807 141.724054 86.9914305 1.939476473 0.209164 58 95 SH16145 16145 YDR092W_4_629869_630598_INTRON_31_298 intron 32.252242 185.754116 32.252242 154.501874 93.377058 1.970240187 0.138811 58 96 SH4926 4926 snR9 snR9 36 52 36.30811 150.784671 93.5463905 1.971027035 0.38556 58 97 SH10803 10803 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 901 916 3267.548482 2526.870201 2897.209342 3.461979877 0.608336 58 98 SH3538 3538 Tyr2 5' flank 30.083538 160.927476 95.505507 1.980028414 -0.038658 58 99 SH20929 20929 YLR388W spliced 46.201419 191.761512 118.9814655 2.075479314 0.139605 58 100 SH16760 16760 YGL087C_7_346902_346404_INTRON_12_96 intron 44.003263 223.142558 44.003263 180.139295 112.071279 2.049494328 0.252609 58 101 SH2970 2970 Ser1 81-83 + 3' flank 81 27.727386 141.935292 84.831339 1.928556322 -0.109256 58 102 SH21067 21067 YMR201C spliced 82.097855 256.632245 169.36505 2.228823795 -0.021291 58 103 SH19097 19097 YOR312C_15_901173_900242_INTRON_2_427 intron 31.490469 167.593227 31.490469 137.102758 84.2966135 1.925810128 0.185769 58 104 SH19943 19943 YBL040C spliced 29.389988 166.925534 98.157761 1.991924643 -0.116707 59 2 SH5760 5760 snR35 5' - 3 -14 3 31.757935 148.059106 89.9085205 1.953800851 0.141264 59 3 SH12410 12410 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.672771 176.017766 29.672771 147.344995 88.508883 1.94698686 0.004241 59 4 SH14947 14947 MT tRNA Met 5' / tRNA 27.590155 188.133514 27.590155 161.543359 94.566757 1.975738496 -0.221306 59 5 SH536 536 Cys1 5' flank 29.813378 155.144952 92.479165 1.9660439 -0.027735 59 6 SH7802 7802 snoRNA cluster1 snR75 32.037766 191.849459 32.037766 160.811693 96.4247295 1.984188429 0.08624 59 7 SH20270 20270 YDR424C spliced 32.09338 172.828175 102.4607775 2.010557647 0.016265 59 8 SH5135 5135 snR11 3' 29.968063 172.511953 101.240008 2.005352171 -0.10996 59 9 SH5814 5814 snR35 snR35 256 272 32.152685 138.28342 85.2180525 1.930531605 0.222235 59 10 SH9081 9081 snR14 / U4 RNA U4 21 35 45.170104 220.802709 132.9864065 2.123807251 -0.192016 59 11 SH2706 2706 Pro5 5' flank 38.62308 172.899787 105.7614335 2.024327329 0.254514 59 12 SH17678 17678 YKL006W_11_431544_432358_INTRON_130_527 intron 29.920018 211.397193 29.920018 182.477175 106.1985965 2.026118777 -0.170016 59 13 SH12038 12038 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7076 7096 27.710878 130.223344 78.967111 1.89744625 -0.04104 59 14 SH9253 9253 snR6 / U6 RNA 3' 29.803504 149.245109 89.5243065 1.951940965 0.002984 59 15 SH6988 6988 snR60 snR60 21 37 34.036676 170.347867 102.1922715 2.009418053 0.134237 59 16 SH10835 10835 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1061 1079 42.562638 192.694367 117.6285025 2.070512568 0.078664 59 17 SH12764 12764 MT COX1 COX1ai1 29.637528 204.214416 29.637528 175.576888 102.607208 2.01117787 -0.148585 59 18 SH17710 17710 YKL081W_11_282533_284097_INTRON_206_531 intron 40.303977 207.314804 40.303977 168.010827 104.157402 2.017690139 0.347124 59 19 SH10900 10900 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1386 1403 209.454591 404.563691 307.009141 2.487151307 0.103228 59 20 SH19160 19160 YPL075W_16_412249_415357_INTRON_9_759 intron 31.704201 219.313568 31.704201 188.609367 110.156784 2.042011248 -0.122647 59 21 SH17917 17917 YLR061W_12_263195_263949_INTRON_13_401 intron 29.560973 164.365446 29.560973 135.804473 82.682723 1.917414771 0.060016 59 22 SH20960 20960 YML025C spliced 28.486091 161.022683 94.754387 1.976599326 -0.152371 59 23 SH399 399 Asn1 3' flank 27.410201 122.104702 74.7574515 1.873654488 -0.010129 59 24 SH21838 21838 copy of SH16603 152.072932 329.974042 241.023487 2.382059365 0.116009 59 25 SH2814 2814 Pro6 3' flank 28.463432 133.132382 80.797907 1.907400111 -0.004181 59 26 SH15231 15231 MT COX3 cox3 / 3' 29.545541 197.473293 29.545541 168.927752 99.2366465 1.99667208 -0.115411 59 27 SH5402 5402 snR31 snR31 76 88 33.866901 151.11861 92.4927555 1.966107718 0.253198 59 28 SH21414 21414 Ser4 spliced 31.818297 168.600092 100.2091945 2.000907571 0.025338 59 29 SH7601 7601 snR189 snR189 76 92 31.946336 181.897832 106.922084 2.029067415 -0.052391 59 30 SH14995 14995 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.940807 173.135672 29.940807 144.194865 87.067836 1.939857751 0.040186 59 31 SH9403 9403 RUF1 3' 30.096122 155.821763 92.9589425 1.968291175 -0.011673 59 32 SH5939 5939 snR36 snR36 151 170 30.241864 142.880907 86.5613855 1.937324199 0.068391 59 33 SH10400 10400 RUF8 5' 30.362339 190.584959 110.473649 2.043258699 -0.192036 59 34 SH12935 12935 MT COX1 COX1ai2 30.450294 208.968348 30.450294 179.518054 104.984174 2.021123836 -0.120564 59 35 SH16619 16619 YFL039C_6_54695_53260_INTRON_11_318 intron 29.408242 144.458582 29.408242 116.05034 72.729291 1.861709354 0.176722 59 36 SH14114 14114 MT COB intronic 28.345824 181.839735 28.345824 154.493911 91.4198675 1.961040588 -0.129085 59 37 SH16620 16620 YFL039C_6_54695_53260_INTRON_11_318 intron 40.532526 194.02443 40.532526 154.491904 97.512215 1.989059022 0.508341 59 38 SH6175 6175 snR40 5' 30.63447 138.944887 84.7896785 1.928342989 0.117326 59 39 SH2648 2648 Pro4 5' flank 28.48522 154.244474 91.364847 1.960779131 -0.117595 59 40 SH17130 17130 YHR010W_8_126513_127484_INTRON_32_592 intron 148.530206 493.048445 148.530206 345.518239 247.0242225 2.392739541 0.006823 59 41 SH3642 3642 Val2 5' flank 30.87063 155.933015 93.4018225 1.97035535 0.04048 59 42 SH3073 3073 Ser3 tRNA 61 73 30.958579 152.548491 91.753535 1.962622805 0.064161 59 43 SH5608 5608 snR34 5' 35.513572 172.424905 103.9692385 2.016904863 0.16467 59 44 SH19648 19648 SIR1 2.2 28.843017 139.203126 84.0230715 1.924398553 -0.011029 59 45 SH18436 18436 YMR142C_13_551206_550205_INTRON_5_406 intron 31.11195 216.082147 31.11195 185.970197 108.5410735 2.035594113 -0.121458 59 46 SH19910 19910 YAL001C spliced 31.116545 191.879775 111.49816 2.0472677 -0.174069 59 47 SH6691 6691 snR49 5' 28.861719 131.324486 80.0931025 1.903595117 0.03574 59 48 SH8365 8365 snoRNA cluster4 3' 31.085422 223.301927 31.085422 193.216505 112.1509635 2.049803009 -0.186982 59 49 SH13660 13660 MT ATP6 ATP6 31.063329 173.765846 31.063329 143.702517 87.382923 1.941426568 0.119564 59 50 SH14404 14404 MT 21S rRNA 21S rRNA3 31.041145 165.962046 31.041145 135.920901 83.481023 1.921587762 0.162249 59 51 SH14212 14212 MT ATP9 5'/ATP9 31.017144 189.523715 31.017144 159.506571 95.2618575 1.978919046 0.031951 59 52 SH21121 21121 YNL112W spliced 33.223706 182.300115 107.7619105 2.032465282 -0.009153 59 53 SH4274 4274 telomerase RNA telomerase 406 420 33.180594 147.769719 90.4751565 1.956529343 0.233794 59 54 SH15119 15119 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 3' 28.66686 160.079117 28.66686 132.412257 80.5395585 1.906009245 0.015045 59 55 SH17113 17113 YHR001W-A_8_107819_108115_INTRON_7_69 3' exon 30.835682 177.412919 30.835682 147.577237 89.2064595 1.950396303 0.082745 59 56 SH561 561 Cys1 3' flank 30.77492 143.988159 87.3815395 1.941419692 0.098597 59 57 SH3890 3890 RNaseP 3' 31.829324 179.549091 105.6892075 2.024030641 -0.03794 59 58 SH5870 5870 snR35 536-540 + 3' 536 32.892352 166.424599 99.6584755 1.998514239 0.100594 59 59 SH17600 17600 YJL205C-A_10_50443_50139_INTRON_33_175 5' exon 30.644822 183.856019 30.644822 154.211197 92.4280095 1.9658036 0.034239 59 60 SH8850 8850 LSR1 / U2 RNA U2 891 908 39.460565 194.410952 116.9357585 2.067947337 0.01298 59 61 SH6606 6606 snR47 3' 30.567147 166.873992 98.7205695 1.994407652 -0.039198 59 62 SH6066 6066 snR37 snR37 246 263 32.693362 139.435815 86.0645885 1.934824497 0.25012 59 63 SH12640 12640 MT_15S MT_15S 195.463284 620.048484 195.463284 425.5852 310.524242 2.49209551 -0.063852 59 64 SH9834 9834 RUF5-1 5' 28.030777 176.436435 102.233606 2.00959368 -0.259864 59 65 SH20948 20948 YLR448W spliced 94.394133 235.324056 164.8590945 2.21711291 0.277813 59 66 SH4941 4941 snR9 snR9 111 129 75.106664 171.32662 123.216642 2.090669369 0.723115 59 67 SH15490 15490 YBL092W_2_45639_46364_INTRON_1_333 intron 29.498875 197.23509 29.498875 168.736215 99.117545 1.996150537 -0.117773 59 68 SH3643 3643 Val2 5' flank 27.133873 124.215901 75.674887 1.878951781 -0.045174 59 69 SH9576 9576 RUF3 RUF3 266 283 29.01193 146.587698 87.799814 1.943493596 -0.039013 59 70 SH3077 3077 Ser3 tRNA 81 96 1306.171858 2156.205775 1731.188817 3.238344438 -0.351757 59 71 SH18104 18104 YLR367W_12_855877_857316_INTRON_698_1180 intron 30.754432 185.271157 30.754432 155.516725 93.1355785 1.969115616 0.03482 59 72 SH9880 9880 RUF5-1 RUF5-1 206 220 51.399804 194.537866 122.968835 2.089795059 0.175022 59 73 SH3070 3070 Ser3 tRNA 46 62 29.634675 151.178421 90.406548 1.956199887 -0.019232 59 74 SH5799 5799 snR35 snR35 181 203 30.729624 184.449977 107.5898005 2.031771102 -0.13103 59 75 SH15745 15745 YCR028C-A_3_173432_172942_INTRON_243_325 3' exon 30.852347 163.359316 30.852347 133.506969 82.179658 1.91476433 0.163365 59 76 SH20305 20305 YER003C spliced 35.201824 177.194721 106.1982725 2.026117452 0.108061 59 77 SH14381 14381 MT ORF9 and ORF10 (hypothetical) 3' 29.106905 160.094934 29.106905 131.988029 80.547467 1.906051888 0.049629 59 78 SH13959 13959 MT COB Cytbi3 29.279876 191.310037 29.279876 163.030161 96.1550185 1.982971956 -0.105369 59 79 SH18184 18184 YLR448W_12_1028848_1029762_INTRON_16_399 3' exon 35.804995 197.149868 35.804995 162.344873 99.074934 1.995963792 0.27611 59 80 SH18888 18888 YOL047C_15_242745_241612_INTRON_244_306 3' exon 101.359736 374.675476 101.359736 274.31574 187.837738 2.27378285 0.049535 59 81 SH11859 11859 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6181 6197 27198.7223 26824.75626 27011.73928 4.431552549 -0.396674 59 82 SH8477 8477 snoRNA cluster 5 3' 31.671557 173.9014 31.671557 143.229843 87.4507 1.94176329 0.162475 59 83 SH5009 5009 snR10 snR10 76 93 57.211824 225.913772 141.562798 2.150949138 -0.071567 59 84 SH10541 10541 RUF8 RUF8 631 647 31.442926 166.455448 98.949187 1.99541223 0.01616 59 85 SH14438 14438 MT 21S rRNA 21S rRNA3 176.256566 526.953153 176.256566 351.696587 263.9765765 2.421565392 0.159197 59 86 SH13228 13228 MT COX1 COX1-ai4 31.064378 222.403071 31.064378 192.338693 111.7015355 2.048059143 -0.18011 59 87 SH4857 4857 snR8 snR8 66 82 150.293935 345.42213 247.8580325 2.394202998 0.019754 59 88 SH11532 11532 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4546 4561 274.083633 380.411327 327.24748 2.514876311 0.51816 59 89 SH10325 10325 RUF7 RUF7 236 250 51.055769 203.703223 127.379496 2.105099526 0.06922 59 90 SH15355 15355 YBL026W_2_170585_171000_INTRON_55_182 intron 32.357424 217.87959 32.357424 186.522166 109.439795 2.039175271 -0.079438 59 91 SH4963 4963 snR9 3' 28.165404 129.693405 78.9294045 1.897238826 -0.0042 59 92 SH8211 8211 snoRNA cluster 3; snR51 30.124838 208.30201 30.124838 179.177172 104.651005 2.019743403 -0.138721 59 93 SH15398 15398 YBL050W_2_125087_126081_INTRON_31_146 intron 44.306921 269.220187 44.306921 225.913266 135.1100935 2.130687795 -0.255706 59 94 SH21552 21552 copy of SH4565 32.105854 168.305082 100.205468 2.000891421 0.043936 59 95 SH16571 16571 YER133W_5_432491_433954_INTRON_178_702 3' exon 42.265722 232.254985 42.265722 190.989263 116.6274925 2.066800938 0.094774 59 96 SH3025 3025 Ser2 3' flank 30.082057 149.695298 89.8886775 1.953704991 0.019851 59 97 SH12 12 Ala1 5' flank 30.065261 189.109902 109.5875815 2.039761343 -0.197238 59 98 SH21345 21345 YPR098C spliced 154.313382 343.011782 248.662582 2.395610439 0.06067 59 99 SH16377 16377 YER003C_5_159117_157735_INTRON_32_124 3' exon 482.978492 1170.306485 482.978492 688.327993 585.6532425 2.767640552 0.211675 59 100 SH8258 8258 snoRNA cluster4 5' 27.863197 160.424746 27.863197 133.561549 80.712373 1.906940116 -0.050743 59 101 SH2026 2026 Lys3 tRNA 76 88 33.815892 189.483547 111.6497195 2.047857636 -0.053205 59 102 SH7110 7110 snR63 snR63 56 75 29.700525 147.739624 88.7200745 1.948021898 0.004014 59 103 SH13157 13157 MT COX1 intronic 32.632961 213.376387 32.632961 181.743426 107.1881935 2.030146952 -0.025484 59 104 SH60 60 Ala2 5' flank 31.561812 160.825534 96.193673 1.983146508 0.058173 60 2 SH12636 12636 MT_15S MT_15S 29.679973 205.669916 29.679973 176.989943 103.334958 2.014247267 -0.154054 60 3 SH6204 6204 snR40 81-97 + 3' 81 36.236054 168.912537 102.5742955 2.011038543 0.223525 60 4 SH2290 2290 Phe2 tRNA-intron/exon 46 62 40.641185 149.956886 95.2990355 1.979088505 0.561824 60 5 SH1039 1039 Gly3 5' flank 27.721329 191.57672 109.6490245 2.040004772 -0.36214 60 6 SH7050 7050 snR62 snR62 41 60 34.272969 179.046776 106.6598725 2.02800106 0.058481 60 7 SH3164 3164 Ser5 5' flank 29.988338 130.151459 80.0698985 1.903469278 0.12338 60 8 SH9524 9524 RUF3 RUF3 6 23 30.01992 185.457118 107.738519 2.032371001 -0.180243 60 9 SH14842 14842 MT tRNA Asp tRNA Asp 30.031992 222.673873 30.031992 193.641881 111.8369365 2.048585262 -0.231993 60 10 SH8098 8098 snoRNA cluster 3; 5' 32.190568 204.699673 32.190568 173.509105 102.8498365 2.012203606 0.017923 60 11 SH21252 21252 YPL075W spliced 29.992321 156.973226 93.4827735 1.970731589 -0.024807 60 12 SH14966 14966 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' / cox2 29.943696 176.281064 29.943696 147.337368 88.640532 1.947632354 0.023145 60 13 SH4335 4335 telomerase RNA telomerase 711 732 28.803361 150.385674 89.5945175 1.952281435 -0.074143 60 14 SH4984 4984 snR10 5' 27.660737 129.048523 78.35463 1.894064664 -0.037254 60 15 SH10659 10659 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 181 196 36.185651 183.243927 109.714789 2.040265172 0.081846 60 16 SH19832 19832 Negative Control 29.672848 144.417171 87.0450095 1.939743877 0.020052 60 17 SH13278 13278 MT COX1 Exon 5a 29.614887 194.874023 29.614887 166.259136 97.9370115 1.990946848 -0.097647 60 18 SH17697 17697 YKL006W_11_431544_432358_INTRON_130_527 intron/exon 29.568746 167.382699 29.568746 138.813953 84.1913495 1.925267471 0.043489 60 19 SH1025 1025 Gly2 3' flank 31.667261 141.712878 86.6900695 1.937969351 0.170819 60 20 SH5642 5642 snR34 snR34 131 147 222.678561 443.490744 333.0846525 2.522554622 0.012951 60 21 SH5219 5219 snR30 5' 29.493549 145.990631 87.74209 1.943207975 -0.001157 60 22 SH19112 19112 YOR312C_15_901173_900242_INTRON_2_427 3' exon 31.608188 197.69847 31.608188 167.090282 99.349235 1.997164527 0.022092 60 23 SH11896 11896 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6366 6381 199.172985 408.148272 303.6606285 2.482388487 0.030784 60 24 SH20386 20386 YFL034C-B spliced 31.58778 176.32696 103.95737 2.016855284 -0.033782 60 25 SH18801 18801 YNL301C_14_64561_63569_INTRON_113_544 intron 31.592186 161.312678 31.592186 130.720492 81.156339 1.909322448 0.22971 60 26 SH12571 12571 MT_15S MT_15S 29.489231 177.440335 29.489231 148.951104 89.2201675 1.950463034 -0.017418 60 27 SH23 23 Ala1 tRNA 11 23 46.647137 208.112132 127.3796345 2.105099998 -0.038391 60 28 SH6850 6850 snR52 3' 33.912184 190.156433 112.0343085 2.049351038 -0.055781 60 29 SH3692 3692 Val3 5' flank 31.899413 156.015479 93.957446 1.972931203 0.108086 60 30 SH14616 14616 MT 21S rRNA Sce1 endonuc 29.891985 158.585932 29.891985 129.693947 79.792966 1.901964609 0.119346 60 31 SH21509 21509 copy of SH2854 58.331476 218.305735 138.3186055 2.140880602 0.015989 60 32 SH3854 3854 RNaseP RNaseP 236 250 117.572141 265.762824 191.6674825 2.282548439 0.255302 60 33 SH16319 16319 YDR471W_4_1401759_1402553_INTRON_32_415 intron 146.114011 566.223824 146.114011 421.109813 283.611912 2.452724468 -0.36869 60 34 SH5673 5673 snR34 snR34 286 303 30.3449 143.710127 87.0275135 1.939656575 0.07096 60 35 SH1732 1732 Leu7 5' flank 32.58226 190.640835 111.6115475 2.04770913 -0.107999 60 36 SH7752 7752 snoRNA cluster1 snR76 63.4771 281.93233 63.4771 219.45523 141.466165 2.15065258 0.072019 60 37 SH6693 6693 snR49 5' - 8 -9 8 30.444626 146.525519 88.4850725 1.946870011 0.062052 60 38 SH18391 18391 YMR116C_13_500687_499455_INTRON_538_810 intron/exon 32.685026 218.759028 32.685026 187.074002 109.879514 2.04091673 -0.072355 60 39 SH21105 21105 YNL050C spliced 30.543061 179.193511 104.868286 2.02064417 -0.113039 60 40 SH17565 17565 YJL189W_10_75932_76473_INTRON_7_392 intron 50.552146 248.594994 50.552146 199.042848 124.797497 2.096205875 0.113272 60 41 SH14790 14790 "MT tRNAs (Lys, Arg1, Gly)" 5' 30.700949 207.702123 30.700949 178.001174 104.3510615 2.018496871 -0.096618 60 42 SH20655 20655 YIL018W spliced 37.450528 189.103455 113.2769915 2.054141706 0.037602 60 43 SH12625 12625 MT_15S MT_15S 39.763308 231.192241 39.763308 192.428933 116.0961205 2.064817707 0.040985 60 44 SH2373 2373 Phe4 5' flank 30.896199 152.592402 91.7443005 1.962579094 0.059742 60 45 SH11357 11357 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3671 3684 35488.96252 34551.93216 35020.44734 4.544321689 -0.453306 60 46 SH1272 1272 Ile2 tRNA-intron 56 72 35.398353 186.694843 111.046598 2.045505258 0.025649 60 47 SH6122 6122 snR39B 5' 30.929883 164.304968 97.6174255 1.98952735 -0.001382 60 48 SH1891 1891 Lys1 5' flank 58.916924 228.409314 143.663119 2.157345291 -0.07155 60 49 SH10487 10487 RUF8 RUF8 361 380 35.383759 192.796448 114.0901035 2.057247974 -0.044683 60 50 SH19377 19377 YPR043W_16_654161_654842_INTRON_3_405 intron 33.144687 222.569685 33.144687 190.424998 111.7848425 2.048382919 -0.085585 60 51 SH16771 16771 YGL103W_7_310965_311925_INTRON_50_560 intron 30.904457 166.686296 30.904457 136.781839 83.843148 1.923467576 0.148034 60 52 SH5639 5639 snR34 snR34 116 132 35.347485 186.232425 110.789955 2.044500386 0.029063 60 53 SH10593 10593 RUF8 RUF8 891 905 30.856509 175.722697 103.289603 2.014056608 -0.07408 60 54 SH622 622 Gln1 3' flank 200.452765 477.949828 339.2012965 2.530457504 -0.237807 60 55 SH7611 7611 snR189 snR189 126 144 30.759996 135.899593 83.3297945 1.920800311 0.143209 60 56 SH4584 4584 U3b (snR17b) 3' 28.49085 133.677365 81.0841075 1.908935741 -0.005337 60 57 SH2506 2506 Pro1 tRNA 21 36 61.752604 184.900848 123.326726 2.091057202 0.412849 60 58 SH19348 19348 YPL249C-A_16_76239_75699_INTRON_17_254 intron 765.125389 1763.813525 765.125389 999.688136 882.4067625 2.945668828 0.182067 60 59 SH15364 15364 YBL027W_2_168385_169338_INTRON_3_386 exon/intron 30.59243 219.036586 30.59243 189.444156 110.018293 2.041464902 -0.172861 60 60 SH12263 12263 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 50.467415 258.63275 50.467415 209.165335 129.816375 2.113329478 0.003094 60 61 SH17169 17169 YHR016C_8_138446_136872_INTRON_48_215 3' exon 32.722249 212.078171 32.722249 180.355922 106.5390855 2.027508965 -0.009278 60 62 SH20370 20370 YER133W spliced 30.444694 155.091063 92.7678785 1.967397625 0.016033 60 63 SH6297 6297 snR42 snR42 266 282 32.517724 164.253661 98.3856925 1.992931947 0.092521 60 64 SH5038 5038 snR10 snR10 221 237 32.343334 191.131403 111.7373685 2.048198439 -0.121152 60 65 SH5546 5546 snR33 snR33 16 32 32.12362 185.574486 108.849053 2.036824655 -0.07953 60 66 SH18557 18557 YMR292W_13_854795_855293_INTRON_23_104 5' exon 31.870928 227.52544 31.870928 196.654512 114.26272 2.057904558 -0.186849 60 67 SH10861 10861 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1191 1208 1720.227657 1445.047525 1582.637591 3.199381477 0.639346 60 68 SH12583 12583 MT_15S MT_15S 29.228703 170.942056 29.228703 142.713353 85.971028 1.93435212 -0.002461 60 69 SH18152 18152 YLR406C_12_931752_931062_INTRON_58_406 3' exon 35.290825 210.783107 35.290825 176.492282 105.8915535 2.02486132 0.117789 60 70 SH20602 20602 YHR041C spliced 29.856635 173.163421 101.510028 2.006508948 -0.120753 60 71 SH13651 13651 MT ATP6 ATP6 30.748558 198.415492 30.748558 168.666934 99.707746 1.998728899 -0.038995 60 72 SH1157 1157 His1 tRNA 6 23 31.69457 134.413308 83.053939 1.919360235 0.214814 60 73 SH11285 11285 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3311 3324 32.705704 170.117367 101.4115355 2.006087359 0.067659 60 74 SH669 669 Gln2 3' flank 68.070032 218.342212 143.206122 2.155961584 0.139503 60 75 SH3924 3924 RNase MRP RNaseMRP 36 57 28.714708 157.927513 93.3211105 1.969979898 -0.120059 60 76 SH10557 10557 RUF8 RUF8 711 725 83.357369 201.513606 142.4354875 2.153618206 0.474626 60 77 SH22 22 Ala1 tRNA 6 18 126.603549 322.008281 224.305915 2.350840726 -0.03007 60 78 SH7339 7339 snR68 5' 29.173492 183.881801 106.5276465 2.027462332 -0.225041 60 79 SH1932 1932 Lys1 3' flank 27.196521 130.460634 78.8285775 1.89668369 -0.081082 60 80 SH363 363 Arg5 3' flank 33.657817 154.801586 94.2297015 1.974187815 0.217157 60 81 SH12395 12395 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 43.300334 219.207464 43.300334 176.90713 110.103732 2.04180204 0.28432 60 82 SH2786 2786 Pro6 tRNA 21 36 94.727241 210.374379 152.55081 2.183414518 0.500726 60 83 SH11084 11084 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2306 2322 26360.45188 23289.09995 24824.77591 4.394885337 -0.212771 60 84 SH20232 20232 YDR139C spliced 39.801395 202.862631 121.332013 2.083975403 -0.079107 60 85 SH1839 1839 Leu9 5' flank 31.170893 160.633681 95.902287 1.981828964 0.036087 60 86 SH7720 7720 snoRNA cluster1 snR77 43.524295 209.603347 43.524295 167.079052 105.3016735 2.022435273 0.41362 60 87 SH6163 6163 snR39B 3' 30.771071 142.845834 86.8084525 1.938562014 0.104789 60 88 SH15196 15196 MT COX3 cox3 28.510442 161.55487 28.510442 134.044428 81.277435 1.909969989 -0.006026 60 89 SH5470 5470 snR32 snR32 11 28 30.383974 155.262194 92.823084 1.967655994 0.010997 60 90 SH17038 17038 YGR183C_7_859471_859058_INTRON_4_216 intron 32.263231 189.913748 32.263231 158.650517 95.456874 1.979807208 0.113097 60 91 SH418 418 Asp1 5' flank 32.133435 153.542995 92.838215 1.967726782 0.136196 60 92 SH17493 17493 YJL041W_10_365480_368069_INTRON_2_119 exon/intron 30.023563 180.337709 30.023563 151.314146 90.6688545 1.957458129 0.007098 60 93 SH12335 12335 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.02374 221.782331 34.02374 188.758591 111.3911655 2.046850748 -0.039396 60 94 SH7449 7449 snR69 3' 81.775633 203.668731 142.722182 2.154491477 0.43666 60 95 SH10876 10876 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1266 1279 766.307275 1106.255676 936.2814755 2.971406431 0.020453 60 96 SH3035 3035 Ser2 3' flank 34.031212 185.666331 109.8487715 2.040795204 -0.01126 60 97 SH6295 6295 snR42 snR42 256 275 29.98754 162.196518 96.092029 1.982687364 -0.051655 60 98 SH14486 14486 MT 21S rRNA 21S rRNA3 34.015166 201.943768 34.015166 168.928602 101.471884 2.006345724 0.147597 60 99 SH1966 1966 Lys2 tRNA 31 50 350.710011 517.907607 434.308809 2.637798638 0.289924 60 100 SH17992 17992 YLR287C-A_12_713158_712537_INTRON_4_433 5' exon 35.945747 245.834695 35.945747 210.888948 123.4173475 2.091376208 -0.22893 60 101 SH14427 14427 MT 21S rRNA 21S rRNA3 29.833218 210.777352 29.833218 181.944134 105.888676 2.024849518 -0.172475 60 102 SH12714 12714 MT ORF 8 (hypothetical) ORF8 / 3' 27.767145 171.435497 27.767145 144.668352 86.2177485 1.935596677 -0.121102 60 103 SH16471 16471 YER102W_5_362729_363698_INTRON_1_360 intron 33.76709 241.28931 33.76709 208.52222 121.144655 2.083304257 -0.24854 60 104 SH2757 2757 Pro5 3' flank 31.716838 191.97101 111.843924 2.048612396 -0.151981 61 2 SH20743 20743 YJL205C-A spliced 31.884284 153.232742 92.558513 1.966416369 0.12168 61 3 SH13928 13928 MT COB Cytbi3 29.786046 199.865775 29.786046 171.079729 100.4328875 2.001875949 -0.112878 61 4 SH530 530 Cys1 5' flank 29.850042 152.218372 91.034207 1.959204613 -0.009758 61 5 SH20326 20326 YER056C-A spliced 45.097801 192.799147 118.948474 2.075358875 0.112144 61 6 SH18151 18151 YLR406C_12_931752_931062_INTRON_58_406 3' exon 32.128884 175.819189 32.128884 144.690305 88.4095945 1.946499399 0.184009 61 7 SH12989 12989 MT COX1 COX1ai2 30.002693 220.708094 30.002693 191.705401 110.854047 2.044751553 -0.216202 61 8 SH16560 16560 YER133W_5_432491_433954_INTRON_178_702 intron 30.026857 170.006591 30.026857 140.979734 85.5032955 1.931982854 0.063804 61 9 SH21535 21535 copy of SH3941 30.031702 165.119586 97.575644 1.989341426 -0.06307 61 10 SH21812 21812 copy of SH15492 34.352167 191.799447 113.075807 2.053369696 -0.054856 61 11 SH5852 5852 snR35 snR35 446 462 45.161343 200.67267 122.9170065 2.089611975 0.022939 61 12 SH4875 4875 snR8 snR8 156 168 34.249838 179.029099 106.6394685 2.027917972 0.057839 61 13 SH19555 19555 CBP1 2.2 29.860873 178.180165 104.020519 2.017119016 -0.149504 61 14 SH14128 14128 MT COB exon5/intron 36.243582 203.470811 36.243582 168.227229 102.2354055 2.009601324 0.230634 61 15 SH9266 9266 RUF1 5' 51.221511 212.87061 132.0460605 2.120725449 -0.025303 61 16 SH15604 15604 YBR119W_2_479296_480281_INTRON_9_97 exon/intron 31.777912 212.186816 31.777912 181.408904 106.593408 2.027730348 -0.054182 61 17 SH1378 1378 Leu1 5' flank 29.571281 192.109491 110.840386 2.04469803 -0.244197 61 18 SH12148 12148 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7626 7639 783.151948 998.707812 890.92988 2.949843525 0.213165 61 19 SH6575 6575 snR47 5' 29.466824 177.772245 103.6195345 2.015441637 -0.172008 61 20 SH6846 6846 snR52 3' 31.554569 193.103384 112.3289765 2.050491802 -0.16805 61 21 SH15809 15809 YDL061C_4_341182_340627_INTRON_1_408 intron 29.400313 151.796387 29.400313 123.396074 76.3981935 1.883083089 0.125302 61 22 SH21173 21173 YNL312W spliced 217.48591 407.819296 312.652603 2.495062049 0.131768 61 23 SH17751 17751 YKL157W_11_154993_158183_INTRON_282_664 intron 29.362579 185.456646 29.362579 157.094067 93.228323 1.969547872 -0.069469 61 24 SH1038 1038 Gly3 5' flank 29.357061 160.933162 95.1451115 1.978386479 -0.089418 61 25 SH18291 18291 YML073C_13_124172_123227_INTRON_16_430 5' exon 34.671724 225.012179 34.671724 191.340455 113.0060895 2.053101847 -0.042555 61 26 SH4512 4512 U3b (snR17b) U3b 116 133 29.400124 157.56084 93.480482 1.970720943 -0.06922 61 27 SH523 523 Cys1 5' flank 31.590069 146.924824 89.2574465 1.950644458 0.136495 61 28 SH6188 6188 snR40 snR40 1 19 293.838451 622.402013 458.120232 2.660979472 -0.23205 61 29 SH15612 15612 YBR181C_2_592732_591670_INTRON_7_358 5' exon 70.595909 331.18235 70.595909 261.586441 166.091175 2.220346557 -0.195411 61 30 SH15880 15880 YDL082W_4_308423_309387_INTRON_5_369 intron 31.965978 211.855758 31.965978 180.88978 106.427879 2.027055407 -0.042277 61 31 SH19579 19579 AEP2/ATP13 0.6 27.786951 138.844868 83.3159095 1.92072794 -0.087581 61 32 SH9794 9794 RUF4 RUF4 746 763 30.065157 158.165901 94.115529 1.973661288 -0.025905 61 33 SH12781 12781 MT COX1 COX1ai1 32.32988 206.174221 32.32988 174.844341 103.5871105 2.015305719 0.018207 61 34 SH14465 14465 MT 21S rRNA 21S rRNA3 92.880112 388.019956 92.880112 296.139844 194.509978 2.288941885 -0.181873 61 35 SH6124 6124 snR39B 5' 30.237188 192.792115 111.5146515 2.047331931 -0.216414 61 36 SH5458 5458 snR32 5' 30.254808 137.260337 83.7575725 1.923024082 0.100568 61 37 SH6301 6301 snR42 snR42 286 303 30.275844 128.979137 79.6274905 1.901063029 0.150527 61 38 SH13351 13351 MT COX1 intronic 28.125688 158.965116 28.125688 131.839428 79.982558 1.90299529 -0.020703 61 39 SH8782 8782 LSR1 / U2 RNA U2 551 568 41.340885 193.243986 117.2924355 2.069270004 0.054676 61 40 SH612 612 Gln1 3' flank 30.440508 136.450302 83.445405 1.921402427 0.118068 61 41 SH5764 5764 snR35 snR35 6 23 30.520999 145.521412 88.0212055 1.944587312 0.072822 61 42 SH15260 15260 MT 9S rRNA 5' / 9S 28.391274 167.512329 28.391274 140.121055 84.2561645 1.925601685 -0.049398 61 43 SH15815 15815 YDL061C_4_341182_340627_INTRON_1_408 intron/exon 30.662214 203.218393 30.662214 173.556179 102.1091965 2.009064859 -0.073284 61 44 SH21430 21430 Tyr1_2 spliced 46.252462 191.531042 118.891752 2.075151727 0.143013 61 45 SH11618 11618 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4976 4991 26663.63838 33187.50063 29925.5695 4.476042424 -0.760453 61 46 SH19061 19061 YOR234C_15_779404_778554_INTRON_20_546 3' exon 32.970905 206.600203 32.970905 174.629298 103.8001015 2.016197778 0.054239 61 47 SH4934 4934 snR9 snR9 76 92 2243.052377 3447.438185 2845.245281 3.454119712 -0.374022 61 48 SH20513 20513 YGR029W spliced 30.769555 173.368477 102.069016 2.008893928 -0.065652 61 49 SH379 379 Asn1 5' flank 38.564576 188.879092 113.721834 2.055843855 0.060926 61 50 SH12073 12073 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7251 7268 30.793043 167.942891 99.367967 1.997246405 -0.031921 61 51 SH14322 14322 MT VAR1 includes 5’ processing site VAR1 29.688994 197.206055 29.688994 168.517061 99.1030275 1.996086922 -0.103645 61 52 SH2852 2852 Pro7 tRNA-intron/exon 66 78 149.708657 323.932034 236.8203455 2.37441901 0.133398 61 53 SH1925 1925 Lys1 3' flank 30.77681 177.562265 104.1695375 2.017740736 -0.089496 61 54 SH2636 2636 Pro3 3' flank 30.74259 182.382347 106.5624685 2.027604272 -0.118788 61 55 SH7596 7596 snR189 snR189 51 67 32.914345 171.177789 102.046067 2.008796271 0.073233 61 56 SH6198 6198 snR40 snR40 51 65 39.511444 177.30727 108.409357 2.035066769 0.215781 61 57 SH9535 9535 RUF3 RUF3 61 80 28.402847 129.749872 79.0763595 1.898046667 0.012705 61 58 SH4615 4615 snR3 5' - 10 10 32.786598 184.120174 108.453386 2.035243116 -0.041782 61 59 SH10972 10972 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1746 1763 7346.244722 8242.120645 7794.182684 3.891770581 -0.21506 61 60 SH18799 18799 YNL301C_14_64561_63569_INTRON_113_544 intron 28.322342 172.236283 28.322342 144.913941 86.6181415 1.937608861 -0.080728 61 61 SH149 149 Arg1 3' flank 30.477864 187.483996 108.98093 2.03735051 -0.162985 61 62 SH18920 18920 YOL121C_15_92849_92025_INTRON_21_410 intron 28.207505 180.121893 28.207505 152.914388 90.5609465 1.956940953 -0.131163 61 63 SH782 782 Glu1 5' flank 30.282491 146.344687 88.313589 1.946027535 0.051971 61 64 SH15788 15788 YDL029W_4_399336_400634_INTRON_23_145 intron 29.034726 160.107741 29.034726 132.073015 80.5538705 1.906086412 0.043898 61 65 SH15223 15223 MT COX3 cox3 29.922493 175.054735 29.922493 146.132242 88.0273675 1.944617714 0.028328 61 66 SH20319 20319 YER044C-A spliced 29.697523 153.073434 91.3854785 1.96087719 -0.024926 61 67 SH19645 19645 SIR1 2.2 33.717471 178.490592 106.1040315 2.025731886 0.044156 61 68 SH9276 9276 RUF1 5' 39.798224 199.975665 119.8869445 2.078771892 -0.046399 61 69 SH6666 6666 snR48 3' 29.022828 162.683334 95.853081 1.981606077 -0.121943 61 70 SH10697 10697 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 371 389 43.454404 192.24283 117.848617 2.07132449 0.096469 61 71 SH15659 15659 YBR189W_2_604466_605466_INTRON_8_420 intron 28.715191 194.761075 28.715191 167.045884 97.8805375 1.990696346 -0.165496 61 72 SH4162 4162 SRP RNA 3' 32.770282 143.077628 87.923955 1.944107215 0.23411 61 73 SH18277 18277 YML056C_13_164176_162194_INTRON_461_868 intron 36.878157 273.320609 36.878157 237.442452 137.1603045 2.137228441 -0.484371 61 74 SH7320 7320 snR66 3' 28.635596 130.689693 79.6626445 1.901254719 0.023508 61 75 SH13983 13983 MT COB intronic 37.016406 198.482356 37.016406 162.46595 99.741178 1.998874493 0.314712 61 76 SH6107 6107 snR37 3' 43.435023 190.221736 116.8283795 2.067548353 0.120354 61 77 SH19766 19766 Negative Control 31.065256 153.607746 92.336501 1.965373413 0.065694 61 78 SH20300 20300 YEL012W spliced 29.116774 183.873162 106.494968 2.027329087 -0.228632 61 79 SH9076 9076 snR14 / U4 RNA 5' - 12 -4 12 41.936168 177.564332 109.75025 2.040405518 0.254762 61 80 SH5995 5995 snR36 3' 29.329227 153.436265 91.382746 1.960864204 -0.052742 61 81 SH10254 10254 RUF6 3' 29.36547 146.061769 87.7136195 1.943067033 -0.010703 61 82 SH7140 7140 snR63 snR63 206 222 53.801676 199.499953 126.6508145 2.102607987 0.151062 61 83 SH14239 14239 MT tRNA Ser 5' 29.272198 166.064241 29.272198 137.792043 83.5321205 1.921853506 0.028018 61 84 SH14343 14343 MT VAR1 includes 5’ processing site VAR1/3' 29.153648 181.536198 29.153648 153.38255 91.268099 1.960319005 -0.06492 61 85 SH4193 4193 telomerase RNA telomerase 1 19 141.082228 337.846944 239.464586 2.379241295 -0.006151 61 86 SH9180 9180 snR7 U5 RNA U5 171 188 28.828013 134.122348 81.4751805 1.911025331 0.016851 61 87 SH4881 4881 snR8 186-190 + 3' 186 28.645485 122.916897 75.781191 1.879561426 0.075035 61 88 SH12765 12765 MT COX1 COX1ai1 28.465263 204.823663 28.465263 177.3584 102.9118315 2.012465307 -0.234285 61 89 SH18058 18058 YLR333C_12_796335_795573_INTRON_1_423 intron 36.48045 214.698312 36.48045 179.217862 107.849156 2.032816751 0.131644 61 90 SH1470 1470 Leu2 3' flank 34.256403 142.325076 88.2907395 1.945915154 0.330425 61 91 SH15933 15933 YDL115C_4_255042_253994_INTRON_1_88 5' exon 240.778396 677.453509 240.778396 437.675113 339.2267545 2.530490097 0.126043 61 92 SH2557 2557 Pro2 tRNA-exon/intron 21 36 90.980811 195.22416 143.1024855 2.155647177 0.614396 61 93 SH9394 9394 RUF1 546-550 + 3' 546 312.617972 582.861811 447.7398915 2.65102579 -0.047138 61 94 SH13393 13393 MT COX1 intronic 1383.475599 3265.620619 1383.475599 1883.14502 1633.31031 3.213068703 -0.063253 61 95 SH3639 3639 Val2 5' flank 29.911754 160.406637 95.1591955 1.978450762 -0.047917 61 96 SH2830 2830 Pro7 5' flank 29.921884 153.921695 91.9217895 1.96341847 -0.013783 61 97 SH7240 7240 snR65 5' 29.928713 136.075014 83.0018635 1.919087843 0.084503 61 98 SH14133 14133 MT COB intronic 27.908246 174.308996 27.908246 147.40075 87.654498 1.942774207 -0.125008 61 99 SH16730 16730 YGL076C_7_365994_364333_INTRON_565_1032 5' exon 165.717233 508.074662 165.717233 343.357429 254.537331 2.405751486 0.135566 61 100 SH9647 9647 RUF4 RUF4 11 23 31.902626 162.999386 97.451006 1.988786327 0.06461 61 101 SH11215 11215 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2961 2977 54.161666 216.671469 135.4165675 2.131671801 -0.024312 61 102 SH15415 15415 YBL059W_2_110555_111205_INTRON_287_355 5' exon 29.831761 204.94448 29.831761 176.112719 102.97224 2.01272016 -0.13947 61 103 SH8896 8896 LSR1 / U2 RNA U2 1121 1138 27.794333 135.665835 81.730084 1.912381945 -0.068787 61 104 SH20125 20125 YDL079C spliced 29.802925 162.127013 95.964969 1.982112727 -0.064123 62 2 SH16017 16017 YDL189W_4_122079_123590_INTRON_1_99 5' exon 37.281338 204.09307 37.281338 167.811732 102.546535 2.01092099 0.268625 62 3 SH13068 13068 MT COX1 intronic / exon3 30.84522 180.595445 30.84522 150.750225 90.7977225 1.958074955 0.066154 62 4 SH12005 12005 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6911 6934 29.825335 140.787733 85.306534 1.930982297 0.050683 62 5 SH14040 14040 MT COB Cytbi4 29.880612 210.45467 29.880612 181.574058 105.727335 2.024187285 -0.167439 62 6 SH12273 12273 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.091226 201.859776 32.091226 170.76855 101.429888 2.006165946 0.028321 62 7 SH6104 6104 snR37 3' 32.126617 146.059959 89.093288 1.949844987 0.17623 62 8 SH4109 4109 SRP RNA SRP RNA 436 448 40084.4676 29488.23374 34786.35067 4.541408871 -0.043701 62 9 SH10376 10376 RUF7 486-500 + 3' 491 38.647418 197.446146 118.046782 2.072054153 -0.034918 62 10 SH18676 18676 YNL112W_14_413636_416278_INTRON_1274_2275 intron 36.452054 210.752942 36.452054 175.300888 105.876471 2.024799457 0.168001 62 11 SH7270 7270 snR65 3' 32.078953 145.250887 88.66492 1.947751827 0.177649 62 12 SH17188 17188 YHR021C_8_148660_147862_INTRON_4_553 intron 38.4978 239.712523 38.4978 202.214723 120.3562615 2.080468689 -0.091782 62 13 SH11420 11420 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3986 4004 16384.08303 8397.976338 12391.02968 4.093107397 0.793023 62 14 SH3748 3748 Val4 5' flank 34.017869 202.865 118.4414345 2.073503659 -0.183402 62 15 SH5405 5405 snR31 snR31 91 103 31.787868 179.052445 105.4201565 2.022923657 -0.037562 62 16 SH2943 2943 Ser1 5' flank 31.706114 155.59077 93.648442 1.971500557 0.09768 62 17 SH10995 10995 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1861 1878 45820.76536 39219.63612 42520.20074 4.628595306 -0.322529 62 18 SH8440 8440 snoRNA cluster 5 snR128 227.346728 675.220027 227.346728 448.873299 338.1100135 2.529058033 0.01585 62 19 SH14473 14473 MT 21S rRNA 21S rRNA3 31.492226 223.27152 31.492226 192.779294 112.13576 2.049744131 -0.167584 62 20 SH2396 2396 Phe4 tRNA-exon/intron 31 48 31.437424 181.860144 106.648784 2.027955908 -0.074094 62 21 SH10072 10072 RUF6 RUF6 206 223 29.278221 154.304699 91.79146 1.962802278 -0.060926 62 22 SH5630 5630 snR34 snR34 71 90 31.358471 157.840484 94.5994775 1.975888738 0.06317 62 23 SH4088 4088 SRP RNA SRP RNA 331 343 35.562932 186.849894 111.206413 2.046129833 0.027123 62 24 SH19215 19215 YPL081W_16_404945_406039_INTRON_8_508 intron 29.222259 166.205637 29.222259 137.983378 83.6028185 1.922220919 0.023341 62 25 SH10041 10041 RUF6 RUF6 51 67 110.846898 296.190108 203.518503 2.308603899 -0.00821 62 26 SH11172 11172 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2746 2763 56.867314 217.000744 136.934029 2.136511387 0.009449 62 27 SH14903 14903 MT tRNA Ile 3' 29.350788 219.296501 29.350788 190.945713 110.1482505 2.041977604 -0.252014 62 28 SH17161 17161 YHR016C_8_138446_136872_INTRON_48_215 intron 36.901848 189.056154 36.901848 153.154306 95.028077 1.977851941 0.40004 62 29 SH9633 9633 RUF4 5' 962.38848 1297.506149 1129.947315 3.053058194 0.055831 62 30 SH15769 15769 YCR097W_3_293828_294314_INTRON_106_159 intron 29.704076 188.679376 29.704076 159.9753 94.839688 1.976990117 -0.060195 62 31 SH12325 12325 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.828777 168.278998 29.828777 139.450221 84.639499 1.927573084 0.058365 62 32 SH9616 9616 RUF3 3' 29.931406 157.754113 93.8427595 1.97240077 -0.033046 62 33 SH8493 8493 snR19 / U1 RNA 5' 30.002596 145.749306 87.875951 1.943870038 0.036002 62 34 SH10045 10045 RUF6 RUF6 71 90 30.042166 146.599794 88.32098 1.946063879 0.034024 62 35 SH21577 21577 copy of SH5623 30.059149 143.055476 86.5573125 1.937303764 0.054677 62 36 SH3354 3354 Thr3 3' flank 30.068431 178.20234 104.1353855 2.017598329 -0.136682 62 37 SH19581 19581 AEP2/ATP13 0.6 32.257211 189.930242 111.0937265 2.045689535 -0.113708 62 38 SH5563 5563 snR33 snR33 101 118 30.121114 148.01805 89.069582 1.949729414 0.031671 62 39 SH5384 5384 snR31 5' - 4 -14 4 38.900304 210.307666 124.603985 2.095531932 -0.175216 62 40 SH9191 9191 snR7 U5 RNA 3' 30.253899 132.69215 81.4730245 1.911013839 0.126882 62 41 SH13150 13150 MT COX1 intronic 34.717291 231.163401 34.717291 197.44611 116.0817005 2.064763762 -0.110037 62 42 SH6523 6523 snR46 snR46 106 125 30.415038 169.177704 99.796371 1.999114749 -0.062454 62 43 SH13787 13787 MT COB intronic 306.181134 919.394933 306.181134 614.213799 460.1974665 2.662944223 -0.159955 62 44 SH12329 12329 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.731146 184.830075 32.731146 153.098929 92.9150375 1.968086007 0.176203 62 45 SH18666 18666 YNL112W_14_413636_416278_INTRON_1274_2275 intron 31.661925 176.419399 31.661925 145.757474 88.7096995 1.947971108 0.147672 62 46 SH3362 3362 Thr3 3' flank 63.823231 242.514996 153.1691135 2.185171199 -0.129589 62 47 SH10581 10581 RUF8 RUF8 831 848 30.600549 172.383297 101.491923 2.006431481 -0.070158 62 48 SH6075 6075 snR37 snR37 291 308 387.518311 514.786672 451.1524915 2.65432336 0.421215 62 49 SH14811 14811 "MT tRNAs (Lys, Arg1, Gly)" intergenic / tRNA Arg1 32.862275 189.668995 32.862275 157.80672 95.3344975 1.979250082 0.152906 62 50 SH14767 14767 MT ORF11; tRNA Leu; tRNA Gln ORF11 30.676781 170.451148 30.676781 140.774367 85.725574 1.933110402 0.110039 62 51 SH5545 5545 snR33 snR33 11 26 37.350806 157.891066 97.620936 1.989542967 0.373684 62 52 SH584 584 Gln1 5' flank 30.706594 179.64896 105.177777 2.021923987 -0.105636 62 53 SH8257 8257 snoRNA cluster4 5' 28.484058 178.641423 28.484058 151.157365 89.8207115 1.953376491 -0.101609 62 54 SH20769 20769 YKL002W spliced 35.10483 208.227495 121.6661625 2.08516981 -0.217972 62 55 SH15404 15404 YBL050W_2_125087_126081_INTRON_31_146 3' exon 32.851606 180.169508 32.851606 148.317902 90.584754 1.957055109 0.210115 62 56 SH4633 4633 snR3 snR3 81 97 50.53231 228.324757 139.4285335 2.14435166 -0.188348 62 57 SH6485 6485 snR46 5' 30.5677 144.349836 87.458768 1.941803355 0.082543 62 58 SH10042 10042 RUF6 RUF6 56 72 30.539743 173.51883 102.0292865 2.00872485 -0.080547 62 59 SH6258 6258 snR42 snR42 71 91 30.514246 141.275512 85.894879 1.933967272 0.096081 62 60 SH20431 20431 YGL033W spliced 30.481732 195.278852 112.880292 2.052618124 -0.228392 62 61 SH8671 8671 LSR1 / U2 RNA 5' - 11 -4 11 32.626484 166.390157 99.5083205 1.997859396 0.085633 62 62 SH21298 21298 YPL198W spliced 30.346724 160.58185 95.464287 1.979840933 -0.01884 62 63 SH17153 17153 YHR012W_8_129473_130440_INTRON_49_167 intron 30.225961 186.677139 30.225961 157.451178 93.8385695 1.972381379 -0.011166 62 64 SH5191 5191 snR13 111-124 + 3' 111 30.067479 155.494799 92.781139 1.9674597 -0.011947 62 65 SH6023 6023 snR37 snR37 31 53 29.87812 152.65001 91.264065 1.960299809 -0.0101 62 66 SH1010 1010 Gly2 tRNA 41 53 46.842871 228.620672 137.7317715 2.139034133 -0.243623 62 67 SH19930 19930 YBL018C spliced 31.582812 165.263085 98.4229485 1.993096371 0.031762 62 68 SH2826 2826 Pro7 5' flank 29.251363 192.153285 110.702324 2.044156738 -0.264763 62 69 SH10782 10782 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 796 814 31.165823 194.215526 112.6906745 2.051887978 -0.19259 62 70 SH734 734 Gln4 5' flank 28.913155 175.62713 102.2701425 2.009748861 -0.195133 62 71 SH17606 17606 YJL205C-A_10_50443_50139_INTRON_33_175 intron 45.466502 241.547338 45.466502 197.080836 121.273669 2.083766517 0.067855 62 72 SH9839 9839 RUF5-1 RUF5-1 1 22 28.722907 138.329713 83.52631 1.921823296 -0.014913 62 73 SH3628 3628 Val1 3' flank 66.164127 208.333371 137.248749 2.137508395 0.213483 62 74 SH19071 19071 YOR293W_15_867094_867848_INTRON_53_489 intron 32.863398 235.014118 32.863398 203.15072 118.007059 2.071907987 -0.210894 62 75 SH13261 13261 MT COX1 COX1-ai4 28.777647 208.058824 28.777647 180.281177 104.529412 2.019238507 -0.230488 62 76 SH7356 7356 snR68 snR68 1 20 68.694095 214.843789 141.768942 2.151581098 0.180381 62 77 SH7225 7225 snR65 5' 45.787205 208.721505 127.254355 2.104672654 -0.056794 62 78 SH8279 8279 snoRNA cluster4 snR67/intergenic 29.118302 186.764204 29.118302 158.645902 93.882102 1.972582805 -0.094769 62 79 SH13696 13696 MT ORF 5 (hypothetical) 3' 37.67803 203.532942 37.67803 166.854912 102.266471 2.00973327 0.290954 62 80 SH3338 3338 Thr3 tRNA 36 52 150.890617 357.92005 254.4053335 2.405526212 -0.040445 62 81 SH2684 2684 Pro4 tRNA 86 100 39.928777 176.309833 108.119305 2.033903245 0.2355 62 82 SH19888 19888 Positive Control 4 117.359815 293.61335 205.4865825 2.312783469 0.065124 62 83 SH4257 4257 telomerase RNA telomerase 321 338 29.222897 181.816609 105.519753 2.023333766 -0.210403 62 84 SH21038 21038 YMR133W spliced 31.209975 193.825964 112.5179695 2.051221886 -0.187506 62 85 SH18759 18759 YNL162W_14_331319_332151_INTRON_5_516 intron 28.962531 175.031635 28.962531 147.069104 88.0158175 1.944560727 -0.045158 62 86 SH7899 7899 snoRNA cluster1 intergenic 39.214016 218.809577 39.214016 180.595561 109.9047885 2.041016615 0.170414 62 87 SH2503 2503 Pro1 tRNA 6 22 955.585313 1338.552586 1147.06895 3.059589524 -0.003078 62 88 SH16603 16603 YFL034C-B_6_63992_63015_INTRON_21_134 5' exon 152.743675 453.127179 152.743675 301.383504 227.0635895 2.356147499 0.286779 62 89 SH7927 7927 snoRNA cluster1 snR72 28.307571 218.414493 28.307571 191.106922 109.7072465 2.040235315 -0.320525 62 90 SH5947 5947 snR36 snR36 191 217 28.17057 145.90681 87.03869 1.939712346 -0.097366 62 91 SH1863 1863 Leu9 tRNA-intron/exon 56 72 34.140638 166.521397 100.3310175 2.001435217 0.169635 62 92 SH9990 9990 RUF5-1 RUF5-1 756 772 29.99471 173.36604 101.680375 2.007237139 -0.113316 62 93 SH11498 11498 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4376 4391 54.221466 185.203423 119.7124445 2.078139299 0.319838 62 94 SH15496 15496 YBL092W_2_45639_46364_INTRON_1_333 intron 37.975266 207.187173 37.975266 170.211907 104.0935865 2.017423972 0.266753 62 95 SH713 713 Gln3 3' flank 29.893627 130.73707 80.3153485 1.904798548 0.113219 62 96 SH902 902 Glu3 tRNA 21 37 245.418578 474.810803 360.1146905 2.556440838 0.008693 62 97 SH11634 11634 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5056 5073 131.691216 254.91868 193.304948 2.286242971 0.446908 62 98 SH2033 2033 Lys3 3' flank 29.888146 160.025877 94.9570115 1.977527038 -0.04763 62 99 SH8530 8530 snR19 / U1 RNA U1 146 160 31.894489 189.592886 110.7436875 2.04431898 -0.124255 62 100 SH10410 10410 RUF8 5' 31.881592 195.452971 113.6672815 2.055635473 -0.176107 62 101 SH14312 14312 MT VAR1 includes 5’ processing site VAR1 29.852463 188.381311 29.852463 159.528848 94.6906555 1.976307123 -0.047589 62 102 SH8935 8935 snR17a / U3a 5' 27.826829 125.958102 76.8924655 1.885883786 -0.004853 62 103 SH1312 1312 Ile3 5' flank 29.843365 160.181399 95.012382 1.977780206 -0.051529 62 104 SH16525 16525 YER131W_5_423587_424307_INTRON_1_361 intron 29.849555 176.273616 29.849555 147.424061 88.636808 1.947614108 0.016134 63 2 SH17706 17706 YKL081W_11_282533_284097_INTRON_206_531 intron 29.613509 181.591837 29.613509 152.978328 91.2959185 1.960451362 -0.030302 63 3 SH13167 13167 MT COX1 intronic 31.828409 217.183201 31.828409 186.354792 109.0916005 2.037791313 -0.09767 63 4 SH14358 14358 MT ORF9 and ORF10 (hypothetical) ORF9 28.655545 180.772843 28.655545 153.117298 90.8864215 1.958499004 -0.099281 63 5 SH14330 14330 MT VAR1 includes 5’ processing site VAR1 27.630703 178.14008 27.630703 151.509377 89.57004 1.952162768 -0.167483 63 6 SH19186 19186 YPL079W_16_406631_407534_INTRON_12_432 intron 27.672521 189.795424 27.672521 163.122903 95.397712 1.979537959 -0.223002 63 7 SH20706 20706 YJL024C spliced 29.857709 145.742346 87.8000275 1.943494652 0.025995 63 8 SH1772 1772 Leu7 3' flank 38.512298 191.024076 114.768187 2.059821521 0.035373 63 9 SH14292 14292 MT VAR1 includes 5’ processing site VAR1 32.024985 189.224009 32.024985 158.199024 95.1120045 1.978235335 0.102137 63 10 SH2626 2626 Pro3 tRNA 81 95 47.125017 187.677522 117.4012695 2.069672793 0.200618 63 11 SH5260 5260 snR30 snR30 151 163 36.267003 189.646381 112.956692 2.052911965 0.008639 63 12 SH7188 7188 snR64 snR64 6 22 8656.978659 12837.42002 10747.19934 4.031295304 -0.707842 63 13 SH9216 9216 snR6 / U6 RNA 5' 31.83265 160.160181 95.9964155 1.982255017 0.078358 63 14 SH13102 13102 MT COX1 COX1ai3 31.75734 190.267293 31.75734 159.509953 95.6336465 1.980610716 0.078063 63 15 SH12991 12991 MT COX1 COX1ai2 35.949244 227.080745 35.949244 192.131501 114.0403725 2.057058627 -0.025941 63 16 SH5330 5330 snR30 snR30 501 517 31.596535 148.350501 89.973518 1.954114702 0.129097 63 17 SH13430 13430 MT COX1 intronic 29.392666 173.315549 29.392666 144.922883 87.1577745 1.940306132 -0.002653 63 18 SH18405 18405 YMR125W_13_517538_520445_INTRON_26_347 intron 31.436066 166.426792 31.436066 135.990726 83.713396 1.92279496 0.188474 63 19 SH21152 21152 YNL265C spliced 29.24916 163.681609 96.4653845 1.9843715 -0.110778 63 20 SH20925 20925 YLR367W spliced 31.294169 183.788601 107.541385 2.031575625 -0.094549 63 21 SH17216 17216 YHR041C_8_189855_189122_INTRON_15_115 5' exon 31.237489 200.696703 31.237489 170.459214 100.8483515 2.003668803 -0.020243 63 22 SH11573 11573 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4751 4764 39.613141 183.216093 111.414617 2.046942172 0.146203 63 23 SH12385 12385 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.169848 203.195981 31.169848 173.026133 102.0979905 2.009017194 -0.039481 63 24 SH19139 19139 YPL075W_16_412249_415357_INTRON_9_759 intron 33.267713 210.231492 33.267713 177.963779 105.615746 2.023728671 0.033057 63 25 SH20821 20821 YKR057W spliced 37.502043 189.532576 113.5173095 2.055062089 0.033638 63 26 SH8814 8814 LSR1 / U2 RNA U2 711 723 110.478821 234.426908 172.4528645 2.236670413 0.434151 63 27 SH16081 16081 YDR025W_4_491510_492319_INTRON_46_384 intron 27.110207 159.823769 27.110207 133.713562 80.4118845 1.90532024 -0.10803 63 28 SH9234 9234 snR6 / U6 RNA U6 41 58 181.442505 471.299251 326.370878 2.5137114 -0.327006 63 29 SH16080 16080 YDR025W_4_491510_492319_INTRON_46_384 intron 31.574282 223.720186 31.574282 193.145904 112.360093 2.05061209 -0.167673 63 30 SH2941 2941 Ser1 5' flank 31.709894 184.83065 108.270272 2.034509228 -0.088281 63 31 SH21803 21803 copy of SH15073 29.688172 162.569956 96.129064 1.982854714 -0.07434 63 32 SH17670 17670 YKL006C-A_11_430270_429836_INTRON_37_177 intron 29.776851 202.56232 29.776851 173.785469 101.78116 2.007667396 -0.129398 63 33 SH20464 20464 YGL183C spliced 34.143288 179.081473 106.6123805 2.027807641 0.053613 63 34 SH11212 11212 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2946 2961 224.20915 454.891401 339.5502755 2.530904087 -0.023243 63 35 SH11148 11148 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2626 2643 28262.48604 24986.81578 26624.65091 4.425283922 -0.234179 63 36 SH11630 11630 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5036 5052 32.024584 154.383201 93.2038925 1.96943405 0.124733 63 37 SH18029 18029 YLR316C_12_766358_765266_INTRON_230_285 5' exon 29.883716 191.117238 29.883716 162.233522 96.058619 1.982536339 -0.059037 63 38 SH16264 16264 YDR424C_4_1319830_1319376_INTRON_26_121 intron/exon 29.921738 184.530068 29.921738 155.60833 92.765034 1.967384308 -0.022622 63 39 SH9119 9119 snR14 / U4 RNA 3' 29.984399 182.962569 106.473484 2.027241465 -0.168697 63 40 SH12658 12658 MT_15S MT_15S 27.897206 194.333291 27.897206 167.436085 97.6666455 1.989746272 -0.227362 63 41 SH1857 1857 Leu9 tRNA-exon/intron 26 41 115.35657 339.786637 227.5716035 2.35711807 -0.225524 63 42 SH3631 3631 Val1 3' flank 32.421572 178.286511 105.3540415 2.0226512 -0.000863 63 43 SH15057 15057 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 32.496475 189.66032 32.496475 158.163845 95.33016 1.979230322 0.129684 63 44 SH15411 15411 YBL059C-A_2_110500_110086_INTRON_35_119 intron/exon 30.360468 173.763406 30.360468 144.402938 87.381703 1.941420505 0.068128 63 45 SH19292 19292 YPL175W_16_218629_220087_INTRON_18_117 intron 32.591547 184.240287 32.591547 152.64874 92.6201435 1.96670545 0.170305 63 46 SH14848 14848 MT tRNA Asp 3' 28.230463 144.199416 28.230463 116.968953 72.599708 1.860934874 0.086126 63 47 SH10296 10296 RUF7 RUF7 91 113 28.25618 185.984532 107.120356 2.029872007 -0.296317 63 48 SH7456 7456 snR69 3' 32.686393 138.662205 85.674299 1.93285056 0.254184 63 49 SH19354 19354 YPL249C-A_16_76239_75699_INTRON_17_254 intron 30.522834 184.682527 30.522834 155.159693 92.8412635 1.967741042 0.020994 63 50 SH19574 19574 AEP2/ATP13 0.6 30.560965 167.506885 99.033925 1.995783992 -0.043423 63 51 SH10828 10828 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1026 1044 1940.075909 1649.449219 1794.762564 3.254007002 0.589097 63 52 SH7746 7746 snoRNA cluster1 intergenic 28.40332 152.406684 28.40332 125.003364 76.703342 1.884814287 0.043625 63 53 SH15500 15500 YBL092W_2_45639_46364_INTRON_1_333 intron/exon 32.823584 188.37538 32.823584 156.551796 94.68769 1.976293522 0.158816 63 54 SH8610 8610 snR19 / U1 RNA U1 546 562 30.599447 149.259123 89.929285 1.95390114 0.057605 63 55 SH16171 16171 YDR139C_4_733917_733611_INTRON_150_222 3' exon 30.574311 206.578576 30.574311 177.004265 103.789288 2.016152533 -0.098638 63 56 SH13829 13829 MT COB Cytbi2 28.341473 164.079384 28.341473 136.737911 82.539692 1.916662844 -0.034049 63 57 SH3000 3000 Ser2 5' flank 30.516813 157.033671 93.775242 1.972088194 0.01086 63 58 SH18912 18912 YOL120C_15_94401_93394_INTRON_113_559 intron 34.894987 171.806886 34.894987 137.911899 86.403443 1.936531049 0.394272 63 59 SH9105 9105 snR14 / U4 RNA U4 141 158 30.462962 161.756185 96.1095735 1.98276665 -0.016809 63 60 SH12923 12923 MT COX1 COX1ai2 32.620331 204.842501 32.620331 173.22217 102.9212505 2.012505054 0.044397 63 61 SH18510 18510 YMR201C_13_667043_665844_INTRON_28_111 5' exon 32.555377 203.70741 32.555377 172.152033 102.353705 2.010103568 0.046967 63 62 SH5620 5620 snR34 snR34 21 37 32.458441 153.53214 92.9952905 1.968460955 0.157138 63 63 SH15725 15725 YBR255C-A_2_727032_726576_INTRON_64_157 intron/exon 27.974386 179.670767 27.974386 152.696381 90.3353835 1.955857893 -0.14753 63 64 SH21538 21538 copy of SH3944 28.913755 148.677456 88.7956055 1.948391473 -0.057184 63 65 SH4174 4174 telomerase RNA 5' 31.973915 165.157854 98.5658845 1.993726623 0.055417 63 66 SH13492 13492 MT COX1 intronic / Exon5g 28.566653 149.340115 28.566653 121.773462 75.1700575 1.876044882 0.077113 63 67 SH9279 9279 RUF1 5' 40.099333 184.561343 112.330338 2.050497066 0.138901 63 68 SH470 470 Asp2 5' flank 29.28262 149.624976 89.453798 1.951598784 -0.035666 63 69 SH20416 20416 YGL030W spliced 35.447654 190.876639 113.1621465 2.053701177 -0.021611 63 70 SH2304 2304 Phe2 3' flank 29.009739 127.955224 78.4824815 1.894772726 0.067729 63 71 SH13665 13665 MT ATP6 ATP6 28.917099 185.445279 28.917099 157.52818 93.2226395 1.969521395 -0.103431 63 72 SH2296 2296 Phe2 tRNA 76 91 81.264753 231.226219 156.245486 2.193807479 0.175948 63 73 SH17912 17912 YLR061W_12_263195_263949_INTRON_13_401 intron 28.835719 153.500793 28.835719 125.665074 77.2503965 1.887900717 0.070322 63 74 SH8837 8837 LSR1 / U2 RNA U2 826 842 30.933767 176.780685 103.857226 2.016436719 -0.075504 63 75 SH13684 13684 MT ORF 5 (hypothetical) ORF5 28.899969 179.197519 28.899969 151.29755 90.0987595 1.954718812 -0.071969 63 76 SH16401 16401 YER056C-A_5_270183_269421_INTRON_38_434 intron 33.166324 220.648538 33.166324 188.482214 110.824269 2.044634875 -0.067499 63 77 SH3197 3197 Ser5 3' flank 33.277073 155.942709 94.609891 1.975936542 0.188427 63 78 SH1447 1447 Leu2 tRNA 6 18 56926.60899 36018.60613 46472.60756 4.667197041 0.09448 63 79 SH656 656 Gln2 66-72 + 3' flank 66 3' flank 31.371636 128.799827 80.0857315 1.903555147 0.226491 63 80 SH9120 9120 snR14 / U4 RNA 3' 31.428486 193.418757 112.4236215 2.050857571 -0.1756 63 81 SH20657 20657 YIL018W spliced 39.927245 192.698017 116.312631 2.06562688 0.04026 63 82 SH5617 5617 snR34 snR34 6 22 31.402534 131.62015 81.511342 1.911218043 0.211684 63 83 SH7504 7504 snR71 3' 29.20883 140.208732 84.708781 1.927928432 0.009905 63 84 SH5817 5817 snR35 snR35 271 287 41.725806 198.433539 120.0796725 2.079469495 -0.000323 63 85 SH16441 16441 YER074W_5_306319_307192_INTRON_4_469 intron 28.959133 158.214988 28.959133 130.255855 79.607494 1.900953953 0.04937 63 86 SH17497 17497 YJL041W_10_365480_368069_INTRON_2_119 intron 30.890293 200.944088 30.890293 171.053795 100.972044 2.004201148 -0.044675 63 87 SH5468 5468 snR32 snR32 1 20 49.40856 207.406572 128.407566 2.108590614 0.007074 63 88 SH20236 20236 YDR305C spliced 28.508322 147.636575 88.0724485 1.94484007 -0.081449 63 89 SH11070 11070 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2236 2253 40.680116 177.691425 109.1857705 2.038166043 0.23169 63 90 SH1778 1778 Leu8 5' flank 32.324591 186.84233 109.5834605 2.039745011 -0.083548 63 91 SH3614 3614 Val1 66-74 + 3' flank 66 30.169012 187.223373 108.6961925 2.036214332 -0.180612 63 92 SH19542 19542 CBP1 1.2 30.076306 142.861931 86.4691185 1.936861032 0.056934 63 93 SH1617 1617 Leu5 5' flank 30.006338 173.962093 101.9842155 2.008532959 -0.116078 63 94 SH18106 18106 YLR367W_12_855877_857316_INTRON_698_1180 intron 29.957009 188.643721 29.957009 159.686712 94.8218605 1.976908472 -0.041135 63 95 SH19735 19735 Negative Control 31.940654 165.630082 98.785368 1.994692622 0.05057 63 96 SH4761 4761 snR5 5' 29.899969 177.399039 103.649504 2.015567228 -0.142594 63 97 SH2056 2056 Lys4 5' flank 29.880578 139.363373 84.6219755 1.92748316 0.062505 63 98 SH17034 17034 YGR183C_7_859471_859058_INTRON_4_216 intron 29.862099 173.772722 29.862099 144.910623 87.386361 1.941443655 0.030784 63 99 SH16150 16150 YDR092W_4_629869_630598_INTRON_31_298 intron 54.095108 270.603732 54.095108 217.508624 135.801866 2.132905737 -0.033446 63 100 SH1704 1704 Leu6 3' flank 29.828521 140.963457 85.395989 1.931437473 0.049936 63 101 SH11561 11561 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4691 4706 26740.12639 13047.20115 19893.66377 4.298714773 0.726555 63 102 SH19868 19868 Negative Control 31.832597 171.105045 101.468821 2.006332614 0.011194 63 103 SH12894 12894 MT COX1 intronic 29.819556 202.793134 29.819556 173.973578 101.896567 2.008159552 -0.127818 63 104 SH18684 18684 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.831087 178.557113 29.831087 149.726026 89.7785565 1.953172618 0.002298 64 2 SH20101 20101 YDL061C spliced 33.744267 202.974334 118.3593005 2.07320239 -0.190289 64 3 SH13205 13205 MT COX1 COX1-ai4 29.512555 187.385042 29.512555 158.872487 94.192521 1.974016421 -0.068015 64 4 SH12209 12209 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.568679 217.457724 29.568679 188.889045 109.228862 2.038337409 -0.227185 64 5 SH19050 19050 YOR234C_15_779404_778554_INTRON_20_546 intron 29.619374 203.844052 29.619374 175.224678 102.422026 2.010393362 -0.14769 64 6 SH4740 4740 snR4 3' 46.860916 169.471845 108.1663805 2.034092297 0.42987 64 7 SH13073 13073 MT COX1 COX1ai3 29.69063 213.520385 29.69063 184.829755 107.2601925 2.030438572 -0.197419 64 8 SH16395 16395 YER044C-A_5_239773_238459_INTRON_64_151 3' exon 29.70437 159.018793 29.70437 130.314423 80.0093965 1.903140995 0.102367 64 9 SH20943 20943 YLR426W spliced 31.845756 157.95416 94.899958 1.97726602 0.093219 64 10 SH5124 5124 snR11 snR11 221 242 29.679668 153.607806 91.643737 1.96210279 -0.028998 64 11 SH5777 5777 snR35 snR35 71 95 27.50429 137.72162 82.612955 1.917048157 -0.102785 64 12 SH15939 15939 YDL115C_4_255042_253994_INTRON_1_88 intron/exon 262.465512 785.290861 262.465512 523.825349 393.1454305 2.594553232 -0.078402 64 13 SH2987 2987 Ser1 3' flank 29.537372 139.257734 84.397553 1.926329855 0.038765 64 14 SH1974 1974 Lys2 71-73 + 3' flank 71 88 29.473995 138.718297 84.096146 1.924776093 0.037266 64 15 SH10244 10244 RUF6 3' 29.406195 151.046463 90.226329 1.955333288 -0.034587 64 16 SH16658 16658 YFR032C-A_6_223758_223245_INTRON_1_331 exon/intron 29.33474 211.80146 29.33474 183.46672 106.40073 2.026944608 -0.212441 64 17 SH17624 17624 YJR094W-A_10_608000_608553_INTRON_3_277 intron 29.260305 179.012485 29.260305 150.75218 90.0062425 1.954272632 -0.043328 64 18 SH16322 16322 YDR471W_4_1401759_1402553_INTRON_32_415 intron 156.572807 527.327372 156.572807 371.754565 264.163686 2.421873116 -0.069287 64 19 SH21076 21076 YMR230W spliced 33.315551 169.33567 101.3256105 2.005719229 0.106875 64 20 SH8902 8902 LSR1 / U2 RNA U2 1151 1163 50.070316 166.714851 108.3925835 2.034999568 0.507109 64 21 SH4945 4945 snR9 snR9 131 146 87.968091 243.945801 165.956946 2.219995434 0.142006 64 22 SH9606 9606 RUF3 416-431 + 3' 416 26.847985 136.17298 81.5104825 1.911213464 -0.143125 64 23 SH7624 7624 snR189 3' 28.911965 134.693908 81.8029365 1.912768894 0.019661 64 24 SH14762 14762 MT ORF11; tRNA Leu; tRNA Gln ORF11 28.912317 158.541583 28.912317 130.629266 79.7707915 1.901843901 0.04367 64 25 SH5562 5562 snR33 snR33 96 112 35.215958 178.663601 106.9397795 2.029139284 0.094611 64 26 SH14542 14542 MT 21S rRNA 21S rRNA3 31.09332 210.013703 31.09332 179.920383 105.5068515 2.023280663 -0.083773 64 27 SH18100 18100 YLR367W_12_855877_857316_INTRON_698_1180 intron 29.085295 184.451475 29.085295 156.36618 92.7257375 1.967200296 -0.085398 64 28 SH1002 1002 Gly2 tRNA 1 13 91.891445 241.711606 166.8015255 2.222200018 0.200454 64 29 SH10986 10986 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1816 1833 34957.35674 27946.28023 31451.81849 4.497645761 -0.136093 64 30 SH4653 4653 snR3 181-195 + 3' 181 31.563869 137.075206 84.3195375 1.925928216 0.190829 64 31 SH1700 1700 Leu6 tRNA 66 78 31.675146 174.990803 103.3329745 2.014238931 -0.020891 64 32 SH13276 13276 MT COX1 Exon 5a 31.755823 208.380239 31.755823 177.624416 104.6901195 2.019905696 -0.031312 64 33 SH11772 11772 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5746 5763 3643.217669 2416.642571 3029.93012 3.481432612 0.821231 64 34 SH4608 4608 snR3 5' 29.672737 130.465404 80.0690705 1.903464787 0.09922 64 35 SH5280 5280 snR30 snR30 251 266 31.813007 178.371236 105.0921215 2.021570159 -0.032212 64 36 SH21397 21397 Pro2_7 spliced 77.046942 221.406947 149.2269445 2.173847247 0.216142 64 37 SH4199 4199 telomerase RNA telomerase 31 48 31.828131 179.289639 105.558885 2.023494794 -0.036541 64 38 SH19635 19635 RNA14 2.2 31.872908 170.683028 101.277968 2.005514979 0.016069 64 39 SH15581 15581 YBR084C-A_2_415219_414144_INTRON_3_508 intron 39.486207 244.896861 39.486207 206.410654 122.9484305 2.089722989 -0.123501 64 40 SH416 416 Asp1 5' flank 27.730299 160.363388 94.0468435 1.973344224 -0.204852 64 41 SH8285 8285 snoRNA cluster4 intergenic 40.819787 235.111237 40.819787 195.29145 118.0556185 2.072086661 0.022978 64 42 SH17192 17192 YHR021C_8_148660_147862_INTRON_4_553 intron 32.247354 213.781815 32.247354 182.534461 107.3909075 2.030967512 -0.047052 64 43 SH13754 13754 MT COB Exon1 30.15334 184.668971 30.15334 155.515631 92.8344855 1.967709335 -0.006138 64 44 SH3013 3013 Ser2 tRNA 26 45 30.211523 180.00227 105.1068965 2.021631213 -0.138017 64 45 SH20363 20363 YER131W spliced 87.387983 292.143005 189.765494 2.278217245 -0.214596 64 46 SH8925 8925 snR17a / U3a 5' 30.287053 169.396187 99.84162 1.999311619 -0.071648 64 47 SH18598 18598 YNL069C_14_494998_493953_INTRON_29_477 intron 29.225907 207.733595 29.225907 179.507688 104.3667975 2.018562357 -0.197225 64 48 SH13218 13218 MT COX1 COX1-ai4 36.937106 227.493747 36.937106 191.556641 114.2468735 2.057844324 -0.000236 64 49 SH5910 5910 snR36 snR36 6 27 30.399919 188.26033 109.3301245 2.038739843 -0.17197 64 50 SH19950 19950 YBL050W spliced 41.447271 202.929755 122.188513 2.08703038 -0.055545 64 51 SH9792 9792 RUF4 RUF4 736 755 30.481104 191.886865 111.1839845 2.046042234 -0.198848 64 52 SH12059 12059 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7181 7194 34.912696 178.116919 106.5148075 2.027409987 0.089422 64 53 SH13516 13516 MT COX1 intronic 34.923657 216.595024 34.923657 182.671367 108.797512 2.036618964 0.047192 64 54 SH17952 17952 YLR185W_12_522665_523290_INTRON_8_366 5' exon 41.538219 252.071599 41.538219 211.53338 126.5357995 2.102213413 -0.148792 64 55 SH15453 15453 YBL087C_2_60732_59815_INTRON_43_546 intron 32.696038 194.981971 32.696038 163.285933 97.9909855 1.991186125 0.108748 64 56 SH10833 10833 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1051 1069 9791.328727 4887.022009 7339.175368 3.865647265 0.988492 64 57 SH5489 5489 snR32 snR32 106 122 73.523525 250.803007 162.163266 2.209952483 -0.075242 64 58 SH21447 21447 copy of SH126 32.620428 176.068198 104.344313 2.018468784 0.02759 64 59 SH6373 6373 snR43 snR43 106 118 32.585101 178.386542 105.4858215 2.023194089 0.004218 64 60 SH12426 12426 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.342774 203.226127 30.342774 173.883353 102.1130635 2.009081306 -0.094775 64 61 SH19111 19111 YOR312C_15_901173_900242_INTRON_2_427 intron/exon 28.087663 166.437316 28.087663 139.349653 83.718658 1.922822258 -0.067739 64 62 SH15608 15608 YBR119W_2_479296_480281_INTRON_9_97 intron 32.351507 224.257523 32.351507 192.906016 112.6287615 2.051649309 -0.136445 64 63 SH18824 18824 YNL302C_14_62942_61957_INTRON_21_571 intron 30.047941 176.101915 30.047941 147.053974 88.5509575 1.947193262 0.031917 64 64 SH14586 14586 MT 21S rRNA intronic / sce1 29.902625 234.226444 29.902625 205.323819 117.613222 2.070456148 -0.336012 64 65 SH7639 7639 snR189 3' 31.894825 151.170485 91.532655 1.96157606 0.133343 64 66 SH9673 9673 RUF4 RUF4 141 156 36.006413 187.52291 111.7646615 2.048304507 0.028061 64 67 SH552 552 Cys1 61-72 + 3' flank 61 3' flank 57.18385 218.365344 137.774597 2.139169149 0.000331 64 68 SH15254 15254 MT tRNA fMet 3' 29.319489 188.038153 29.319489 159.718664 94.5190765 1.97551947 -0.085939 64 69 SH11918 11918 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6476 6494 39.772504 179.437379 109.6049415 2.039830135 0.194431 64 70 SH5414 5414 snR31 snR31 136 152 50.216003 189.95928 120.0876415 2.079498315 0.213801 64 71 SH11868 11868 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6226 6239 1169.497718 1135.512841 1152.50528 3.061642924 0.51985 64 72 SH4093 4093 SRP RNA SRP RNA 356 371 39.519746 161.054649 100.2871975 2.001245495 0.407827 64 73 SH8496 8496 snR19 / U1 RNA 5' 35.301964 178.500586 106.901275 2.028982885 0.099074 64 74 SH8567 8567 snR19 / U1 RNA U1 331 348 33.218685 144.143105 88.680895 1.947830068 0.256304 64 75 SH12749 12749 MT COX1 COX1ai1 33.262718 228.69369 33.262718 196.430972 114.846845 2.060119069 -0.133727 64 76 SH11382 11382 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3796 3813 31869.588 32836.04139 32352.81469 4.50991207 -0.512092 64 77 SH15020 15020 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 33.41471 199.895655 33.41471 167.480945 100.4478275 2.001940548 0.12362 64 78 SH11248 11248 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3126 3143 41558.12543 32832.50618 37195.3158 4.57048825 -0.167317 64 79 SH11027 11027 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2021 2040 10117.83801 4799.835581 7458.836797 3.872671105 1.059588 64 80 SH3154 3154 Ser4 3' flank 31.47915 178.48364 104.981395 2.021112339 -0.052574 64 81 SH8252 8252 snoRNA cluster4 5' 31.472585 210.705141 31.472585 180.232556 105.8525705 2.024701409 -0.062871 64 82 SH1213 1213 Ile1 tRNA 26 41 29.306381 180.142181 104.724281 2.020047387 -0.19567 64 83 SH13286 13286 MT COX1 Exon 5a 31.33494 216.686262 31.33494 186.351322 108.843131 2.036801026 -0.116357 64 84 SH11825 11825 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6011 6024 610.232337 765.577773 687.905055 2.837528501 0.330235 64 85 SH8268 8268 snoRNA cluster4 snR67 68.955544 308.058902 68.955544 240.103358 154.529451 2.189011262 -0.043274 64 86 SH591 591 Gln1 5' flank - tRNA13 5' flank 13 64.433513 247.914036 156.1737745 2.193608107 -0.166208 64 87 SH11175 11175 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2761 2778 298.996129 573.337846 436.1669875 2.639652792 -0.073419 64 88 SH6126 6126 snR39B 5' 62.811463 222.577356 142.6944095 2.154406959 0.034181 64 89 SH4885 4885 snR8 3' 28.478581 146.649617 87.564099 1.942326083 -0.078421 64 90 SH7224 7224 snR64 3' 32.467031 182.614987 107.541009 2.031574107 -0.039663 64 91 SH16255 16255 YDR397C_4_1266887_1266355_INTRON_38_129 intron/exon 36.441869 246.582169 36.441869 211.1403 123.7910845 2.092689368 -0.223425 64 92 SH18046 18046 YLR333C_12_796335_795573_INTRON_1_423 intron 74.210993 335.345746 74.210993 262.134753 168.172873 2.225755944 -0.155345 64 93 SH18828 18828 YNL302C_14_62942_61957_INTRON_21_571 intron 36.227826 242.945083 36.227826 207.717257 121.9725415 2.086262073 -0.190351 64 94 SH6754 6754 snR50 5' 34.11368 157.551966 95.832823 1.981514282 0.224413 64 95 SH9060 9060 snR14 / U4 RNA 5' 29.99851 155.531077 92.7647935 1.967383182 -0.016902 64 96 SH12652 12652 MT_15S MT_15S 29.944019 192.052717 29.944019 163.108698 96.5263585 1.984645923 -0.059212 64 97 SH7831 7831 snoRNA cluster1 intergenic/snR74 29.894945 214.760519 29.894945 185.865574 107.8802595 2.032941982 -0.190277 64 98 SH16547 16547 YER133W_5_432491_433954_INTRON_178_702 intron 31.86429 170.868911 31.86429 140.004621 85.9344555 1.93416733 0.193515 64 99 SH8518 8518 snR19 / U1 RNA U1 86 107 29.812375 151.262718 90.5375465 1.956828721 -0.007276 64 100 SH8430 8430 snoRNA cluster 5 intergenic 67.185178 285.219434 67.185178 219.034256 143.109717 2.155669123 0.122284 64 101 SH14620 14620 MT 21S rRNA Sce1 endonuc 31.772405 220.581505 31.772405 189.8091 110.7907525 2.044503512 -0.130772 64 102 SH1033 1033 Gly3 5' flank 27.738446 143.003375 85.3709105 1.931309913 -0.114259 64 103 SH716 716 Gln3 3' flank 29.748568 202.159914 115.954241 2.064286637 -0.315995 64 104 SH20921 20921 YLR344W spliced 33.803223 182.563488 108.1833555 2.034160448 0.009126 65 2 SH20339 20339 YER074W-A spliced 29.233226 156.064144 92.648685 1.96683926 -0.073303 65 3 SH20852 20852 YLR061W spliced 39.944463 184.412176 112.1783195 2.04990893 0.137924 65 4 SH14770 14770 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu 54.973146 263.812609 54.973146 209.839463 132.4063045 2.121908664 0.055107 65 5 SH19332 19332 YPL218W_16_138697_139408_INTRON_29_167 3' exon 33.651402 174.369766 33.651402 141.718364 87.684883 1.942924727 0.296906 65 6 SH5351 5351 snR30 3' 27.31016 150.851563 89.0808615 1.949784408 -0.188667 65 7 SH10525 10525 RUF8 RUF8 551 567 31.597077 168.995093 100.296085 2.001283981 0.009918 65 8 SH2169 2169 Met2 5' flank 32.679208 192.063299 112.3712535 2.050655225 -0.116984 65 9 SH12965 12965 MT COX1 COX1ai2 27.355925 175.17633 27.355925 148.820405 88.088165 1.944917563 -0.174577 65 10 SH4789 4789 snR5 snR5 116 135 29.468074 160.352668 94.910371 1.977313671 -0.078658 65 11 SH829 829 Glu2 5' flank 31.564612 190.755955 111.1602835 2.045949646 -0.14703 65 12 SH10141 10141 RUF6 RUF6 551 568 2363.552281 3488.889038 2926.22066 3.466307072 -0.324165 65 13 SH12629 12629 MT_15S MT_15S 31.471271 180.975464 31.471271 150.504193 90.987732 1.95898284 0.109177 65 14 SH18593 18593 YNL069C_14_494998_493953_INTRON_29_477 5' exon 167.660675 512.84276 167.660675 346.182085 256.92138 2.409800246 0.133288 65 15 SH5704 5704 snR34 snR34 441 460 29.241949 154.872465 92.057207 1.964057794 -0.066474 65 16 SH4227 4227 telomerase RNA telomerase 171 186 32.341369 163.387794 97.8645815 1.990625543 0.087725 65 17 SH9073 9073 snR14 / U4 RNA 5' 41.74812 163.554985 102.6515525 2.011365522 0.430571 65 18 SH10630 10630 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 36 56 29.040164 152.735484 90.887824 1.958505706 -0.069589 65 19 SH4038 4038 SRP RNA SRP RNA 81 97 31.058819 163.208169 97.133494 1.987369011 0.013199 65 20 SH19124 19124 YPL075W_16_412249_415357_INTRON_9_759 5' exon 28.89702 207.308859 28.89702 179.411839 104.1544295 2.017677744 -0.217839 65 21 SH8315 8315 snoRNA cluster4 intergenic 89.743668 314.576562 89.743668 225.832894 157.788281 2.198074745 0.311653 65 22 SH18192 18192 YML024W_13_225889_226697_INTRON_4_401 intron 28.793694 202.051049 28.793694 174.257355 101.5255245 2.006575242 -0.194918 65 23 SH588 588 Gln1 5' flank 43.347484 193.865405 118.6064445 2.074108287 0.075784 65 24 SH6194 6194 snR40 snR40 31 46 39.185362 192.197364 115.691363 2.063300938 0.034295 65 25 SH16661 16661 YFR032C-A_6_223758_223245_INTRON_1_331 intron 37.147503 221.627973 37.147503 185.48047 111.3139865 2.046549736 0.073985 65 26 SH19164 19164 YPL075W_16_412249_415357_INTRON_9_759 intron/exon 33.052865 195.831977 33.052865 163.779112 98.4159885 1.993065659 0.125975 65 27 SH4959 4959 snR9 3' 31.063982 162.324485 96.6942335 1.985400575 0.019026 65 28 SH2544 2544 Pro2 5' flank 29.082479 132.849838 80.9661585 1.908303534 0.042789 65 29 SH9430 9430 RUF2 5' - 10 -9 10 32.366395 189.969115 111.167755 2.045978835 -0.110006 65 30 SH20877 20877 YLR185W spliced 31.43207 162.419143 96.9256065 1.986438527 0.040455 65 31 SH4143 4143 SRP RNA SRP RNA 606 620 65.680758 217.990016 141.835387 2.151784598 0.113711 65 32 SH889 889 Glu3 5' flank 29.469692 163.931161 96.7004265 1.98542839 -0.096423 65 33 SH14244 14244 MT tRNA Ser tRNA 29.499524 170.833958 29.499524 142.334434 85.916979 1.934078998 0.019035 65 34 SH14738 14738 MT tRNA cys; tRNA his 3' 27.374106 155.58224 27.374106 129.208134 78.29112 1.893712506 -0.059701 65 35 SH17515 17515 YJL136C_10_156971_156248_INTRON_25_484 intron 29.493955 185.812155 29.493955 157.3182 93.4060775 1.970375135 -0.061359 65 36 SH19901 19901 snR17B spliced 67.989043 233.153552 150.5712975 2.177742193 0.004364 65 37 SH3515 3515 Tyr1 3' flank 29.505751 165.517224 97.5114875 1.989055781 -0.101685 65 38 SH1412 1412 Leu1 3' flank 81.041463 193.791273 137.416368 2.138038466 0.529979 65 39 SH18575 18575 YNL044W_14_545264_545873_INTRON_25_103 5' exon 30.69639 200.993136 30.69639 171.296746 100.996568 2.004306616 -0.057888 65 40 SH6855 6855 snR56 5' 34.018315 172.402436 103.2103755 2.013723358 0.11336 65 41 SH5950 5950 snR36 snR36 206 226 27.680014 129.17519 78.427602 1.894468936 -0.036634 65 42 SH12006 12006 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6916 6939 27.774139 142.12346 84.9487995 1.929157246 -0.10674 65 43 SH1190 1190 Ile1 5' flank 32.186261 192.400692 112.2934765 2.050354527 -0.138153 65 44 SH14534 14534 MT 21S rRNA 21S rRNA3 30.083972 186.350107 30.083972 157.266135 93.6750535 1.97162395 -0.019985 65 45 SH7724 7724 snoRNA cluster1 snR77/intergenic 31.21867 213.025934 31.21867 182.807264 107.012967 2.029436405 -0.092425 65 46 SH18934 18934 YOL121C_15_92849_92025_INTRON_21_410 intron 30.167613 205.231811 30.167613 176.064198 103.1159055 2.01332566 -0.118261 65 47 SH18608 18608 YNL069C_14_494998_493953_INTRON_29_477 intron 58.648432 265.610249 58.648432 207.961817 133.3051245 2.124846845 0.123329 65 48 SH19673 19673 SIR1 2.4 30.239292 169.045474 99.642383 1.998444105 -0.072493 65 49 SH4241 4241 telomerase RNA telomerase 241 255 39.03509 175.992778 107.513934 2.031464753 0.223406 65 50 SH17938 17938 YLR093C_12_327416_326514_INTRON_17_157 intron 30.324039 154.400397 30.324039 125.076358 77.7001985 1.890422128 0.177822 65 51 SH2465 2465 Phe5 3' flank 28.171659 134.600664 81.3861615 1.910550566 -0.034429 65 52 SH12228 12228 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 122.765938 380.406036 122.765938 258.640098 190.703018 2.280357566 0.349672 65 53 SH19514 19514 ACT1 28.21032 145.062643 86.6364815 1.937700806 -0.089874 65 54 SH6896 6896 snR56 3' 30.404718 159.749391 95.0770545 1.978075719 -0.010667 65 55 SH3287 3287 Thr2 tRNA 36 48 1331.1471 1335.489867 1333.318484 3.1249339 0.429409 65 56 SH78 78 Ala2 26-40 26 40 30.380764 145.429239 87.9050015 1.944013586 0.063778 65 57 SH356 356 Arg5 3' flank 57.850574 194.68994 126.270257 2.101301064 0.254588 65 58 SH4994 4994 snR10 snR10 1 18 174.596176 387.843426 281.219801 2.449045897 -0.026066 65 59 SH10849 10849 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1131 1153 576.181704 968.374659 772.2781815 2.887773765 -0.124643 65 60 SH12576 12576 MT_15S MT_15S 36.788769 219.812545 36.788769 184.023776 110.4062725 2.042993748 0.084292 65 61 SH21145 21145 YNL246W spliced 38.870114 189.392843 114.1314785 2.057405443 0.060594 65 62 SH19819 19819 Negative Control 30.046539 156.141515 93.094027 1.968921817 -0.016755 65 63 SH17186 17186 YHR021C_8_148660_147862_INTRON_4_553 intron 32.08218 200.305469 32.08218 169.223289 100.6527345 2.002825578 0.037029 65 64 SH17341 17341 YIL018W_9_316766_317930_INTRON_5_404 intron 29.787656 208.315437 29.787656 179.527781 104.6577185 2.019771263 -0.161749 65 65 SH18714 18714 YNL130C_14_381156_379555_INTRON_30_470 intron 29.655763 166.447847 29.655763 137.792084 83.7239235 1.922849572 0.055436 65 66 SH2566 2566 Pro2 tRNA-intron/exon 66 78 146.817668 316.467844 231.642756 2.364818723 0.155615 65 67 SH2539 2539 Pro2 5' flank 29.434477 157.715663 93.57507 1.971160161 -0.067592 65 68 SH5783 5783 snR35 snR35 101 119 71.959941 255.853614 163.9067775 2.214596912 -0.134151 65 69 SH9258 9258 snR6 / U6 RNA 3' 147.717856 313.945282 230.831569 2.363295204 0.176717 65 70 SH14329 14329 MT VAR1 includes 5’ processing site VAR1 29.248711 159.536908 29.248711 131.288197 80.268454 1.904544898 0.064008 65 71 SH7659 7659 snoRNA cluster1 5' / snR78 29.2189 166.610488 29.2189 138.391588 83.805244 1.923271195 0.020797 65 72 SH14746 14746 MT ORF11; tRNA Leu; tRNA Gln 5' / orf11 27.09488 159.57697 27.09488 133.48209 80.288485 1.904653263 -0.107757 65 73 SH18993 18993 YOR122C_15_552886_552297_INTRON_14_222 exon/intron 29.199158 187.316631 29.199158 159.117473 94.1583155 1.97385868 -0.091419 65 74 SH13514 13514 MT COX1 intronic 29.21109 192.179501 29.21109 163.968411 96.5897505 1.984931044 -0.114899 65 75 SH4353 4353 telomerase RNA telomerase 801 820 31.350656 199.506935 115.4287955 2.062314164 -0.230867 65 76 SH21189 21189 YOL120C spliced 32.453182 148.786146 90.619664 1.957222448 0.182238 65 77 SH19456 19456 CYC1 29.329157 165.726744 97.5279505 1.989129098 -0.115168 65 78 SH5321 5321 snR30 snR30 456 473 31.498909 153.269766 92.3843375 1.965598349 0.096248 65 79 SH20947 20947 YLR448W spliced 44.312608 187.24851 115.780559 2.063635642 0.16836 65 80 SH10100 10100 RUF6 RUF6 346 365 29.420149 137.376571 83.39836 1.92115751 0.04099 65 81 SH16903 16903 YGL226C-A_7_73156_72747_INTRON_22_170 3' exon 29.397664 186.650646 29.397664 158.252982 93.825323 1.972320068 -0.072945 65 82 SH20517 20517 YGR034W spliced 30.401336 168.034024 99.21768 1.996589068 -0.056405 65 83 SH13896 13896 MT COB intronic 27.146343 194.614248 27.146343 168.467905 97.807124 1.990370489 -0.288961 65 84 SH19535 19535 CBP1 1.2 29.15382 139.483958 84.318889 1.925924876 0.009973 65 85 SH5994 5994 snR36 3' 30.08917 179.645701 104.8674355 2.020640648 -0.143589 65 86 SH4376 4376 telomerase RNA telomerase 916 932 31.016505 154.830925 92.923715 1.968126564 0.05601 65 87 SH11787 11787 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5821 5836 220.611117 599.150851 409.880984 2.61265777 -0.512995 65 88 SH2935 2935 Ser1 5' flank 28.719712 172.543357 100.6315345 2.002734095 -0.1914 65 89 SH1255 1255 Ile2 5' flank 28.62493 144.678852 86.651891 1.937778045 -0.057082 65 90 SH19095 19095 YOR312C_15_901173_900242_INTRON_2_427 intron 30.593254 231.841145 30.593254 202.247891 116.4205725 2.066029731 -0.283188 65 91 SH1335 1335 Ile3 tRNA-intron 56 72 34.607107 197.006822 115.8069645 2.063734678 -0.107435 65 92 SH20902 20902 YLR306W spliced 30.39891 165.258984 97.828947 1.990467379 -0.039635 65 93 SH19200 19200 YPL081W_16_404945_406039_INTRON_8_508 intron 26.222346 143.057299 26.222346 117.834953 72.0286495 1.857505272 -0.071338 65 94 SH13595 13595 MT ATP8/AAP1 5' 30.206043 161.153858 30.206043 131.947815 81.076929 1.90889729 0.127932 65 95 SH12461 12461 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 20313.6152 35378.89905 20313.6152 15066.28384 17689.94952 4.247726594 0.141692 65 96 SH18080 18080 YLR344W_12_819312_820142_INTRON_20_466 intron 32.046053 193.567561 32.046053 162.521508 97.2837805 1.988040439 0.075978 65 97 SH14402 14402 MT 21S rRNA 21S rRNA3 43.081788 241.157051 43.081788 199.075263 121.0785255 2.083067123 0.011492 65 98 SH14709 14709 MT tRNA thr2 3' 29.859534 185.836829 29.859534 156.977295 93.4184145 1.970432492 -0.034036 65 99 SH11044 11044 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2106 2124 16003.55118 7171.72195 11587.63656 4.063994865 1.013786 65 100 SH20562 20562 YHR001W-A spliced 33.754998 185.930728 109.842863 2.040771844 -0.023424 65 101 SH6996 6996 snR60 snR60 61 80 33.711698 181.816909 107.7643035 2.032474926 0.012793 65 102 SH6289 6289 snR42 snR42 226 243 53.867719 164.615809 109.241764 2.038388704 0.580587 65 103 SH19282 19282 YPL143W_16_282121_282969_INTRON_20_544 intron 28.644108 175.463523 28.644108 147.819415 88.2317615 1.94562495 -0.072406 65 104 SH16250 16250 YDR397C_4_1266887_1266355_INTRON_38_129 exon/intron 29.637803 197.62616 29.637803 168.988357 99.31308 1.997006451 -0.109708 66 2 SH21402 21402 Pro8 spliced 50.174144 183.489571 116.8318575 2.067561282 0.291235 66 3 SH20789 20789 YKL081W spliced 26.921475 140.497481 83.709478 1.922774634 -0.163412 66 4 SH9461 9461 RUF2 RUF2 146 162 35.407009 176.998185 106.202597 2.026135137 0.116896 66 5 SH13484 13484 MT COX1 intronic 29.127595 191.680586 29.127595 163.552991 96.340293 1.983807963 -0.118784 66 6 SH5451 5451 snR32 5' 29.170263 156.794318 92.9822905 1.96840024 -0.081559 66 7 SH8444 8444 snoRNA cluster 5 snR128 31.314018 188.200488 31.314018 157.88647 94.600244 1.975892257 0.05999 66 8 SH21059 21059 YMR194W spliced 31.335523 162.779176 97.0573495 1.987028427 0.032454 66 9 SH14957 14957 MT tRNA Met 3' 29.231051 190.346317 29.231051 162.115266 95.6731585 1.980790112 -0.104274 66 10 SH14052 14052 MT COB Cytbi4 29.224217 173.69002 29.224217 145.465803 87.34501 1.941238099 -0.017671 66 11 SH3634 3634 Val2 5' flank 31.31493 158.990543 95.1527365 1.978421283 0.054406 66 12 SH20020 20020 YBR089C-A spliced 33.394576 189.864159 111.6293675 2.047778464 -0.07161 66 13 SH310 310 Arg4 3' flank 41.79562 200.874158 121.334889 2.083985697 -0.027255 66 14 SH2882 2882 Pro8 5' flank 2793.351786 1644.944731 2219.148259 3.346186318 1.074535 66 15 SH10039 10039 RUF6 RUF6 41 57 67.028754 248.271857 157.6503055 2.197694817 -0.135439 66 16 SH11274 11274 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3256 3273 37.410076 185.520578 111.465327 2.047139794 0.078497 66 17 SH6764 6764 snR50 5' - 15 -4 15 35.243297 157.413276 96.3282865 1.983753835 0.286206 66 18 SH4288 4288 telomerase RNA telomerase 476 492 38.306675 194.831023 116.568849 2.066582508 -0.011392 66 19 SH6266 6266 snR42 snR42 111 130 28.83737 131.419094 80.128232 1.90378556 0.033402 66 20 SH21831 21831 copy of SH16331 30.853181 193.126622 111.9899015 2.049178863 -0.195181 66 21 SH9781 9781 RUF4 RUF4 681 697 64.144759 215.726014 139.9353865 2.145927552 0.116028 66 22 SH3232 3232 Thr1 tRNA 16 28 28.685493 152.765923 90.725708 1.957730366 -0.095252 66 23 SH2634 2634 Pro3 3' flank 28.672245 166.454877 97.563561 1.989287643 -0.165731 66 24 SH7574 7574 snR189 5' 30.758513 139.49159 85.1250515 1.930057388 0.122777 66 25 SH2098 2098 Lys4 3' flank 34.960283 147.003702 90.9819925 1.958955444 0.340646 66 26 SH4055 4055 SRP RNA SRP RNA 166 184 28.801964 155.592588 92.197276 1.96471809 -0.101695 66 27 SH19017 19017 YOR182C_15_678792_678190_INTRON_4_414 intron 51.930421 278.075222 51.930421 227.144801 139.537611 2.144691283 -0.15662 66 28 SH5267 5267 snR30 snR30 186 198 51.075028 193.752796 122.413912 2.087830777 0.180092 66 29 SH11423 11423 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4001 4016 11260.80802 11496.21388 11378.51095 4.056085432 -0.191954 66 30 SH17246 17246 YHR097C_8_298611_297387_INTRON_126_249 5' exon 112.88685 405.866806 112.88685 293.979956 203.433403 2.308422264 0.024095 66 31 SH19202 19202 YPL081W_16_404945_406039_INTRON_8_508 intron 29.304217 155.041855 29.304217 126.737638 78.0209275 1.892211109 0.096425 66 32 SH7525 7525 snR79 5' 29.353921 144.816246 87.0850835 1.939943773 -0.004857 66 33 SH17653 17653 YJR145C_10_702761_701720_INTRON_15_270 intron/exon 31.493504 206.864748 31.493504 176.371244 103.932374 2.016750847 -0.039625 66 34 SH11686 11686 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5316 5336 957.84115 1498.916275 1228.378713 3.089332282 -0.180545 66 35 SH19412 19412 YPR098C_16_729525_728944_INTRON_48_143 intron/exon 176.353567 548.243519 176.353567 372.889952 274.6217595 2.438734945 0.055209 66 36 SH16509 16509 YER117W_5_396765_397649_INTRON_43_513 intron 31.463395 219.238435 31.463395 188.77504 110.1192175 2.041863117 -0.133262 66 37 SH1985 1985 Lys2 3' flank 29.360641 152.2119 90.7862705 1.958020176 -0.04403 66 38 SH14556 14556 MT 21S rRNA 21S rRNA3 74.222789 319.141657 74.222789 245.918868 160.0708285 2.204312193 -0.027536 66 39 SH5595 5595 snR33 3' 31.617723 147.071239 89.344481 1.95106773 0.137504 66 40 SH996 996 Gly2 5' flank 34.936743 166.446782 100.6917625 2.002993943 0.204596 66 41 SH6970 6970 snR60 5' 29.707079 157.267859 93.487469 1.970753402 -0.046158 66 42 SH21729 21729 copy of SH12129 29.816357 187.136862 108.4766095 2.035336103 -0.202123 66 43 SH1728 1728 Leu7 5' flank 29.909059 175.916814 102.9129365 2.01246997 -0.133501 66 44 SH14251 14251 MT tRNA Ser 3' 29.979888 223.109433 29.979888 194.129545 112.0547165 2.049430141 -0.238317 66 45 SH3194 3194 Ser5 3' flank 45.238575 188.756022 116.9972985 2.068175834 0.162447 66 46 SH19088 19088 YOR293W_15_867094_867848_INTRON_53_489 3' exon 174.159345 542.562304 174.159345 369.402959 271.781152 2.434219335 0.058256 66 47 SH21160 21160 YNL301C spliced 32.272963 151.484453 91.878708 1.96321488 0.156122 66 48 SH1338 1338 Ile3 tRNA-intron 71 86 32.307964 168.857148 100.582556 2.002522668 0.05234 66 49 SH6869 6869 snR56 5' 32.346021 189.275571 110.810796 2.044582075 -0.104588 66 50 SH11786 11786 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5816 5829 1120.910718 1457.789267 1289.349993 3.110370822 0.067237 66 51 SH18859 18859 YNR053C_14_723108_721117_INTRON_811_1341 intron 34.604594 185.089365 34.604594 151.484771 93.0446825 1.968691558 0.291021 66 52 SH8642 8642 snR19 / U1 RNA 3' 30.262101 151.749154 91.0056275 1.959068249 0.021196 66 53 SH7213 7213 snR64 3' 30.276719 150.671785 90.474252 1.956525001 0.02797 66 54 SH16246 16246 YDR381W_4_1236547_1237993_INTRON_286_1051 3' exon 28.096707 178.844436 28.096707 151.747729 89.922218 1.953867011 -0.133484 66 55 SH2394 2394 Phe4 tRNA 21 33 39.029193 184.774437 111.901815 2.048837131 0.11725 66 56 SH2191 2191 Met2 3' flank 30.266399 172.242487 101.254443 2.005414089 -0.089853 66 57 SH15695 15695 YBR220C_2_663261_662457_INTRON_302_722 intron 32.431822 222.398494 32.431822 190.966672 111.699247 2.048050245 -0.116424 66 58 SH10032 10032 RUF6 RUF6 6 23 30.21822 146.860201 88.5392105 1.947135645 0.044713 66 59 SH16169 16169 YDR139C_4_733917_733611_INTRON_150_222 intron 36.711363 220.102138 36.711363 184.390775 110.551069 2.043562946 0.078462 66 60 SH13443 13443 MT COX1 intronic 30.102492 200.93234 30.102492 171.829848 100.96617 2.004175882 -0.097568 66 61 SH11549 11549 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4631 4648 304.736092 580.219953 442.4780225 2.645891705 -0.070467 66 62 SH15444 15444 YBL087C_2_60732_59815_INTRON_43_546 exon/intron 28.818838 192.220075 28.818838 164.401237 96.6100375 1.985022251 -0.145091 66 63 SH8881 8881 LSR1 / U2 RNA U2 1046 1062 71.910288 251.050878 161.480583 2.208120309 -0.096876 66 64 SH10875 10875 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1261 1274 3775.272847 2764.981497 3270.127172 3.514564642 0.655414 66 65 SH11112 11112 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2446 2464 40.233184 207.4519 123.842542 2.092869858 -0.123753 66 66 SH7160 7160 snR63 3' 31.59434 161.731586 96.662963 1.985260103 0.054391 66 67 SH5220 5220 snR30 5' 29.409387 138.006936 83.7081615 1.922767804 0.036651 66 68 SH18274 18274 YML056C_13_164176_162194_INTRON_461_868 intron 27.256233 153.116234 27.256233 126.860001 77.058117 1.886818392 -0.053377 66 69 SH21011 21011 YML124C spliced 29.360599 157.818748 93.5896735 1.971227932 -0.073337 66 70 SH14174 14174 MT COB intronic 27.237686 213.55129 27.237686 187.313604 107.275645 2.030501134 -0.372179 66 71 SH15215 15215 MT COX3 cox3 29.357065 185.179953 29.357065 156.822888 93.0899765 1.968902921 -0.068459 66 72 SH21581 21581 copy of SH5870 29.360572 171.020868 100.19072 2.000827498 -0.139424 66 73 SH20642 20642 YHR203C spliced 928.455046 1582.025691 1255.240369 3.098726898 -0.306783 66 74 SH20556 20556 YHL001W spliced 31.499413 195.833172 113.6662925 2.055631695 -0.193833 66 75 SH3315 3315 Thr3 5' flank 31.518242 148.179774 89.849008 1.953513287 0.124881 66 76 SH10831 10831 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1041 1058 25414.11377 22162.57705 23788.34541 4.376364236 -0.181411 66 77 SH838 838 Glu2 5' flank 31.57466 174.194216 102.884438 2.01234969 -0.022195 66 78 SH11301 11301 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3391 3409 33.731985 186.473282 110.1026335 2.041797707 -0.029158 66 79 SH14281 14281 MT VAR1 includes 5’ processing site VAR1 29.484668 217.318123 29.484668 188.833455 109.1590615 2.038059793 -0.232205 66 80 SH5178 5178 snR13 snR13 46 61 35.867753 151.387089 93.627421 1.971403061 0.358698 66 81 SH8 8 Ala1 5' flank 29.440566 166.308464 97.874515 1.990669623 -0.110139 66 82 SH18776 18776 YNL265C_14_145280_144279_INTRON_28_132 intron 27.258729 164.03132 27.258729 137.772591 82.51566 1.916536378 -0.121577 66 83 SH1858 1858 Leu9 tRNA-exon/intron 31 48 33.528629 160.525686 97.0271575 1.986893309 0.173077 66 84 SH1044 1044 Gly3 5' flank 29.201886 161.253328 95.227607 1.978762871 -0.102027 66 85 SH1497 1497 Leu3 5' flank 31.207417 164.230476 97.7189465 1.989978776 0.015778 66 86 SH1240 1240 Ile1 3' flank 31.110948 193.962067 112.5365075 2.051293433 -0.192498 66 87 SH12500 12500 MT_tRNA Pro tRNA 35.206609 185.575475 35.206609 151.368866 93.2877375 1.96982456 0.324041 66 88 SH9651 9651 RUF4 RUF4 31 48 30.946845 153.17173 92.0592875 1.964067609 0.060071 66 89 SH10449 10449 RUF8 RUF8 171 188 28.793989 164.916278 96.8551335 1.986122644 -0.149415 66 90 SH21606 21606 copy of SH6882 28.721835 113.424142 71.0729885 1.851704577 0.14719 66 91 SH12957 12957 MT COX1 COX1ai2 28.641577 177.935553 28.641577 150.293976 89.4677765 1.951666644 -0.08553 66 92 SH12176 12176 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7766 7783 43.005758 224.024631 133.5151945 2.125530693 -0.255813 66 93 SH14853 14853 MT tRNA Ser2; tRNA Arg2 5' 28.447923 155.315488 28.447923 127.867565 78.157744 1.892972015 0.028077 66 94 SH11519 11519 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4481 4503 73.593736 218.297089 145.9454125 2.164190448 0.205751 66 95 SH10420 10420 RUF8 RUF8 26 47 30.257101 165.95895 98.1080255 1.991704535 -0.05267 66 96 SH1877 1877 Leu9 3' flank 44.375611 159.582043 101.978827 2.008510012 0.527309 66 97 SH3353 3353 Thr3 3' flank 34.056355 153.077967 93.567161 1.971123452 0.250538 66 98 SH2115 2115 Met1 5' flank 33.928866 179.84113 106.884998 2.028916753 0.038923 66 99 SH8916 8916 LSR1 / U2 RNA 3' 93.483242 276.228093 184.8556675 2.26683277 -0.042109 66 100 SH6187 6187 snR40 5' - 13 -4 13 122.981256 340.808698 231.894977 2.365291342 -0.165141 66 101 SH8731 8731 LSR1 / U2 RNA U2 296 313 29.64077 132.577243 81.1090065 1.909069082 0.084436 66 102 SH2980 2980 Ser1 3' flank 29.587262 118.762039 74.1746505 1.870255509 0.170061 66 103 SH11356 11356 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3666 3679 5976.701739 5625.933503 5801.317621 3.763526644 0.125484 66 104 SH19513 19513 ACT1 35.540996 192.975082 114.258039 2.057886766 -0.043563 67 2 SH1249 1249 Ile2 5' flank 28.700149 168.183268 98.4417085 1.993179142 -0.17208 67 3 SH10856 10856 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1166 1179 142.027986 290.552265 216.2901255 2.335036693 0.279114 67 4 SH16386 16386 YER007C-A_5_166884_166236_INTRON_12_114 3' exon 30.881622 199.736535 30.881622 169.854913 100.3682675 2.001596428 -0.038053 67 5 SH13715 13715 MT tRNAGlu (and 5' processing site for COB) 3' 26.755021 169.17526 26.755021 143.420239 85.08763 1.929866427 -0.192551 67 6 SH3662 3662 Val2 tRNA 51 65 30.97217 172.197573 101.5848715 2.006829036 -0.046497 67 7 SH7678 7678 snoRNA cluster1 snR78/intergenic 33.101291 239.888823 33.101291 207.787532 120.4444115 2.080786654 -0.254942 67 8 SH6247 6247 snR42 snR42 16 28 58.338594 211.706498 135.022546 2.130406293 0.081358 67 9 SH15234 15234 MT COX3 3' 28.96194 177.003334 28.96194 149.041394 89.001667 1.949398141 -0.055582 67 10 SH11306 11306 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3416 3429 43.640217 200.124357 121.882287 2.085940595 0.007322 67 11 SH14428 14428 MT 21S rRNA 21S rRNA3 28.963157 197.158808 28.963157 169.195651 99.079404 1.995983385 -0.158011 67 12 SH18471 18471 YMR143W_13_551927_552902_INTRON_25_568 intron 31.043594 212.240709 31.043594 182.197115 106.6203545 2.027840122 -0.099541 67 13 SH15579 15579 YBR084C-A_2_415219_414144_INTRON_3_508 intron 33.119033 215.374062 33.119033 183.255029 108.187031 2.034175203 -0.021749 67 14 SH18249 18249 YML034W_13_209525_212155_INTRON_1921_2046 intron 33.098016 185.503317 33.098016 153.405301 93.2516585 1.969656565 0.195009 67 15 SH14946 14946 MT tRNA Met 5' 29.939775 190.06355 29.939775 161.123775 95.531775 1.980147847 -0.049587 67 16 SH9184 9184 snR7 U5 RNA U5 191 208 28.867284 151.667222 90.267253 1.955530226 -0.076295 67 17 SH4036 4036 SRP RNA SRP RNA 71 88 28.830265 134.261577 81.545921 1.911402242 0.016207 67 18 SH14497 14497 MT 21S rRNA 21S rRNA3 334.661524 1001.392281 334.661524 667.730757 501.1961405 2.700007718 -0.190904 67 19 SH19347 19347 YPL249C-A_16_76239_75699_INTRON_17_254 intron 31.850548 209.056033 31.850548 178.205485 105.0280165 2.021305164 -0.029063 67 20 SH17833 17833 YKR094C_11_618384_617630_INTRON_9_376 intron 30.760851 203.121077 30.760851 173.360226 102.0605385 2.008857855 -0.066133 67 21 SH4252 4252 telomerase RNA telomerase 296 313 30.718722 163.4343 97.076511 1.987114159 -0.00879 67 22 SH184 184 Arg2 36-52 36 52 57.683606 210.760576 134.222091 2.127824 0.082313 67 23 SH20219 20219 YDR092W spliced 38.97785 203.211583 121.0947165 2.083125195 -0.095582 67 24 SH8453 8453 snoRNA cluster 5 snR128 39.013074 206.854931 39.013074 168.841857 103.9274655 2.016730336 0.312689 67 25 SH4085 4085 SRP RNA SRP RNA 316 328 39.085369 186.881955 112.983662 2.053015647 0.093568 67 26 SH1405 1405 Leu1 tRNA 96 113 66.383451 214.289636 140.3365435 2.147170776 0.157829 67 27 SH15106 15106 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 28.878054 164.144315 28.878054 136.266261 82.5721575 1.916833632 0.008145 67 28 SH19448 19448 CYC1 28.984331 151.264892 90.1246115 1.954843406 -0.065745 67 29 SH4028 4028 SRP RNA SRP RNA 31 48 31.190326 159.599697 95.3950115 1.979525665 0.043033 67 30 SH13488 13488 MT COX1 intronic 31.28776 214.68746 31.28776 184.3997 107.84373 2.0327949 -0.100396 67 31 SH74 74 Ala2 6-12 6 18 33.473196 182.470488 107.971842 2.033310511 -0.001767 67 32 SH3094 3094 Ser3 3' flank 33.51478 178.028111 105.7714455 2.02436844 0.041311 67 33 SH13848 13848 MT COB Cytbi2 29.290681 204.80124 29.290681 176.510559 102.90062 2.012417991 -0.17598 67 34 SH637 637 Gln2 5' flank 31.391132 186.763695 109.0774135 2.037734831 -0.117941 67 35 SH10542 10542 RUF8 RUF8 636 653 31.369105 149.045707 90.207406 1.955242194 0.110318 67 36 SH8107 8107 snoRNA cluster 3; 5' 35.585566 222.142598 35.585566 187.557032 111.571299 2.04755249 0.019346 67 37 SH3755 3755 Val4 tRNA 1 13 115.113807 274.828722 194.9712645 2.289970608 0.170868 67 38 SH14816 14816 "MT tRNAs (Lys, Arg1, Gly)" tRNA / intergenic 31.424787 187.561336 31.424787 157.136549 94.280668 1.974422651 0.071175 67 39 SH5547 5547 snR33 snR33 21 35 31.512052 172.171124 101.841588 2.007925163 -0.014036 67 40 SH16731 16731 YGL076C_7_365994_364333_INTRON_565_1032 exon/intron 40.158963 227.578999 40.158963 188.420036 114.2894995 2.058006331 0.094887 67 41 SH13631 13631 MT ATP6 ATP6 27.477994 180.548235 27.477994 154.070241 90.7741175 1.957962035 -0.192217 67 42 SH16330 16330 YDR471W_4_1401759_1402553_INTRON_32_415 intron 31.875045 181.879951 31.875045 151.004906 91.4399755 1.961136101 0.132943 67 43 SH13682 13682 MT ORF 5 (hypothetical) 5' 29.82575 166.336554 29.82575 137.510804 83.668277 1.922560826 0.069066 67 44 SH398 398 Asn1 71-74 + 3' flank 71 3' flank 29.90005 132.33092 81.115485 1.909103769 0.104228 67 45 SH16003 16003 YDL137W_4_216158_217074_INTRON_1_332 intron 137.083725 427.567986 137.083725 291.484261 214.283993 2.33098973 0.236548 67 46 SH3531 3531 Tyr2 5' flank 29.986978 175.372484 102.679731 2.011484722 -0.125489 67 47 SH21722 21722 copy of SH11712 493.640532 526.603557 510.1220445 2.707674092 0.679815 67 48 SH4641 4641 snR3 snR3 121 137 32.205902 171.344509 101.7752055 2.007641988 0.031568 67 49 SH9101 9101 snR14 / U4 RNA U4 121 140 34.404247 176.791661 105.597954 2.023655504 0.08445 67 50 SH18028 18028 YLR316C_12_766358_765266_INTRON_230_285 5' exon 34.432725 203.795723 34.432725 170.362998 102.3978615 2.010290887 0.147945 67 51 SH21804 21804 copy of SH15279 30.109738 184.469504 107.289621 2.030557711 -0.169233 67 52 SH9946 9946 RUF5-1 RUF5-1 536 550 34.478964 181.447676 107.96332 2.033276231 0.043183 67 53 SH19843 19843 Negative Control 30.13851 174.840433 102.4894715 2.010679254 -0.112979 67 54 SH19205 19205 YPL081W_16_404945_406039_INTRON_8_508 intron 32.318623 206.308323 32.318623 174.9897 103.6541615 2.015586743 0.016712 67 55 SH253 253 Arg3 3' flank 32.31628 169.515638 100.915959 2.003959852 0.048867 67 56 SH3323 3323 Thr3 5' flank 30.131464 156.266739 93.1991015 1.969411725 -0.011547 67 57 SH19628 19628 RNA14 2.2 32.287399 165.033681 98.66054 1.994143488 0.07442 67 58 SH21760 21760 copy of SH13392 27.910251 176.533043 102.221647 2.009542874 -0.26925 67 59 SH4182 4182 telomerase RNA 5' 30.027401 181.042131 105.534766 2.023395552 -0.155297 67 60 SH6560 6560 snR47 5' 32.112788 149.719049 90.9159185 1.958639931 0.155292 67 61 SH6604 6604 snR47 3' 34.162541 156.464255 95.313398 1.979153953 0.234127 67 62 SH6838 6838 snR52 3' 27.588764 128.934498 78.261631 1.893548895 -0.04188 67 63 SH9377 9377 RUF1 RUF1 461 476 479.782602 817.725108 648.753855 2.812079952 -0.078678 67 64 SH15861 15861 YDL079C_4_314747_312950_INTRON_413_704 intron 31.643102 179.549891 31.643102 148.906789 90.2749455 1.955567235 0.129121 67 65 SH15466 15466 YBL087C_2_60732_59815_INTRON_43_546 intron 33.68461 182.28651 33.68461 149.6019 91.643255 1.962100506 0.253357 67 66 SH17877 17877 YLR048W_12_242233_243350_INTRON_91_449 intron 31.506049 208.046526 31.506049 177.540477 104.523263 2.019212959 -0.045594 67 67 SH9339 9339 RUF1 RUF1 271 287 33.61111 155.660756 94.635933 1.976056068 0.208937 67 68 SH19524 19524 ACT1 29.376367 173.627344 101.5018555 2.006473981 -0.153786 67 69 SH19808 19808 Negative Control 29.400228 167.849531 98.6248795 1.993986486 -0.120456 67 70 SH15667 15667 YBR189W_2_604466_605466_INTRON_8_420 3' exon 29.428814 177.943821 29.428814 149.515007 89.4719105 1.951686711 -0.024735 67 71 SH11497 11497 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4371 4387 50.787079 173.003848 111.8954635 2.04881248 0.431344 67 72 SH4894 4894 snR8 3' 27.345748 136.950875 82.1483115 1.914598641 -0.110064 67 73 SH262 262 Arg4 5' flank 29.484696 139.002743 84.2437195 1.925537533 0.036434 67 74 SH8709 8709 LSR1 / U2 RNA U2 186 203 29.492826 142.225568 85.859197 1.933786822 0.019153 67 75 SH10567 10567 RUF8 RUF8 761 777 101.285832 224.246757 162.7662945 2.211564477 0.43755 67 76 SH85 85 Ala2 61-73 61 73 1030.106109 1102.605152 1066.355631 3.027902066 0.403658 67 77 SH6963 6963 snR58 3' 31.656091 158.131031 94.893561 1.977236744 0.080915 67 78 SH19683 19683 SIR1 2.4 103.501746 314.940156 209.220951 2.320605172 -0.192465 67 79 SH6924 6924 snR58 5' - 1 -19 1 31.661981 149.256711 90.459346 1.956453444 0.128458 67 80 SH8292 8292 snoRNA cluster4 intergenic 38.042981 252.152798 38.042981 215.109817 126.576399 2.102352736 -0.240185 67 81 SH19490 19490 YPT1 33.724582 179.366368 106.545475 2.02753501 0.036149 67 82 SH6184 6184 snR40 5' 29.404782 185.469734 107.437258 2.031154916 -0.219015 67 83 SH13395 13395 MT COX1 intronic 27.212755 162.471309 27.212755 136.258554 81.7356545 1.912411545 -0.115891 67 84 SH5696 5696 snR34 snR34 401 419 29.248415 142.583668 85.9160415 1.934074259 -0.000333 67 85 SH7629 7629 snR189 3' 29.172919 143.980433 86.576676 1.937400908 -0.013373 67 86 SH11993 11993 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6851 6866 50.177231 214.06334 132.1202855 2.120969503 -0.051745 67 87 SH7955 7955 snoRNA cluster 2 5' 29.056778 176.408311 29.056778 148.351533 88.7041555 1.947943966 -0.045081 67 88 SH1851 1851 Leu9 5' flank - tRNA11 11 1236.929492 2139.11767 1688.023581 3.227378509 -0.410727 67 89 SH13532 13532 MT COX1 intronic 37.342775 169.621254 37.342775 133.278479 85.310627 1.931003134 0.562654 67 90 SH19316 19316 YPL198W_16_173151_174701_INTRON_12_420 intron 28.917934 157.671841 28.917934 129.753907 79.3359205 1.899469865 0.049642 67 91 SH16712 16712 YGL031C_7_438393_437938_INTRON_1_456 intron 30.931735 200.723451 30.931735 170.791716 100.8617255 2.003726394 -0.040611 67 92 SH10015 10015 RUF6 5' 30.835444 184.39068 107.613062 2.031864989 -0.124277 67 93 SH2693 2693 Pro4 3' flank 32.785653 176.024649 104.405151 2.018721926 0.03406 67 94 SH458 458 Asp1 3' flank 30.576459 173.592708 102.0845835 2.008960161 -0.078734 67 95 SH13151 13151 MT COX1 intronic 30.423271 211.011903 30.423271 181.588632 106.0059515 2.025330249 -0.133875 67 96 SH16618 16618 YFL039C_6_54695_53260_INTRON_11_318 intron 30.264123 186.533603 30.264123 157.26948 93.7668015 1.972049102 -0.007612 67 97 SH9767 9767 RUF4 RUF4 611 627 30.107117 169.992299 100.049708 2.000215825 -0.086357 67 98 SH10648 10648 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 126 141 8786.221086 5600.308669 7193.264878 3.856926053 0.63153 67 99 SH19557 19557 CBP1 2.2 29.826718 155.879413 92.8530655 1.967796246 -0.030633 67 100 SH19070 19070 YOR293W_15_867094_867848_INTRON_53_489 intron 57.921061 271.229431 57.921061 214.30837 136.1147155 2.13390508 0.049931 67 101 SH16665 16665 YFR032C-A_6_223758_223245_INTRON_1_331 intron 29.614805 182.317384 29.614805 153.702579 91.658692 1.962173655 -0.034038 67 102 SH19324 19324 YPL218W_16_138697_139408_INTRON_29_167 exon/intron 29.534001 169.812839 29.534001 141.278838 85.4064195 1.931490515 0.027296 67 103 SH12839 12839 MT COX1 COX1ai1 35.468053 218.188258 35.468053 183.720205 109.594129 2.039787289 0.056061 67 104 SH9336 9336 RUF1 RUF1 256 273 29.40458 144.47658 86.94058 1.939222533 0.000604 68 2 SH3349 3349 Thr3 3' flank 30.510064 143.096648 86.803356 1.938536516 0.08569 68 3 SH2130 2130 Met1 tRNA 36 52 65.97253 222.309909 144.1412195 2.158788192 0.076705 68 4 SH7768 7768 snoRNA cluster1 snR76 34.724658 214.794421 34.724658 181.069763 107.8972105 2.033010217 0.055207 68 5 SH12388 12388 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 61.807753 243.992627 61.807753 183.184874 122.4963135 2.088123019 0.433956 68 6 SH10755 10755 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 661 678 108.477847 310.351236 209.4145415 2.321006835 -0.117989 68 7 SH17121 17121 YHR010W_8_126513_127484_INTRON_32_592 intron 28.638902 173.507673 28.638902 145.868771 87.2538365 1.940784532 -0.062437 68 8 SH4130 4130 SRP RNA SRP RNA 541 555 230.795883 428.718132 329.7570075 2.518194033 0.112915 68 9 SH374 374 Asn1 5' flank 28.698713 135.277728 81.9882205 1.91375146 0.000699 68 10 SH986 986 Gly2 5' flank 28.718227 133.719431 81.218829 1.909656724 0.011159 68 11 SH21910 21910 copy of SH19563 185.004306 350.222962 267.613634 2.427508235 0.219884 68 12 SH5542 5542 snR33 5' - 13 -4 13 32.893752 197.810543 115.3521475 2.062025684 -0.158899 68 13 SH7707 7707 snoRNA cluster1 snR77 171.735168 554.467267 171.735168 383.732099 277.7336335 2.443628476 -0.025158 68 14 SH13732 13732 MT COB Exon1 30.827285 196.63593 30.827285 166.808645 98.817965 1.994835906 -0.022959 68 15 SH1313 1313 Ile3 5' flank 28.750148 145.242185 86.9961665 1.939500116 -0.050917 68 16 SH16727 16727 YGL033W_7_435621_436347_INTRON_56_125 3' exon 30.818965 220.750863 30.818965 190.931898 110.8754315 2.044835323 -0.177223 68 17 SH9157 9157 snR7 U5 RNA U5 56 75 28.727776 131.031655 79.8797155 1.902436509 0.027952 68 18 SH18488 18488 YMR194W_13_651144_651909_INTRON_17_479 intron 41.165271 248.525945 41.165271 208.360674 124.7629725 2.096085713 -0.119997 68 19 SH7877 7877 snoRNA cluster1 snR73 28.676537 176.006012 28.676537 148.329475 88.503006 1.946958022 -0.072708 68 20 SH15849 15849 YDL075W_4_322225_322987_INTRON_58_478 intron 30.718373 219.55117 30.718373 189.832797 110.275585 2.04247937 -0.171398 68 21 SH20546 20546 YGR214W spliced 32.76666 171.662624 102.214642 2.009513112 0.061952 68 22 SH12411 12411 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.692094 162.925112 30.692094 133.233018 81.962556 1.913615493 0.153997 68 23 SH5378 5378 snR31 5' 30.709056 125.822582 78.265819 1.893572134 0.199758 68 24 SH12528 12528 MT_ORF6 + ORF7 (hypothetical) ORF6/7 32.824454 189.855976 32.824454 158.031522 95.427988 1.979675767 0.149307 68 25 SH14425 14425 MT 21S rRNA 21S rRNA3 30.818456 202.567666 30.818456 172.74921 101.783833 2.007678802 -0.059048 68 26 SH11732 11732 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5546 5561 12140.46777 5024.855065 8582.661418 3.93362198 1.222504 68 27 SH19858 19858 Negative Control 33.099853 171.124125 102.111989 2.009076736 0.084058 68 28 SH8854 8854 LSR1 / U2 RNA U2 911 925 4422.008155 5934.65957 5178.333863 3.714190047 -0.349751 68 29 SH987 987 Gly2 5' flank 31.216129 175.61021 103.4131695 2.014575849 -0.051769 68 30 SH20338 20338 YER074W-A spliced 54.575064 208.12944 131.352252 2.118437523 0.067803 68 31 SH20312 20312 YER007C-A spliced 29.241905 165.822721 97.532313 1.989148524 -0.121821 68 32 SH19443 19443 YPR187W_16_911252_911795_INTRON_21_96 intron/exon 52.58447 276.742241 52.58447 225.157771 138.8711205 2.14261194 -0.128438 68 33 SH21141 21141 YNL162W spliced 31.374727 162.923237 97.148982 1.987438254 0.033893 68 34 SH14838 14838 MT tRNA Asp 5' / tRNA Asp 33.464419 224.284747 33.464419 191.820328 112.6423735 2.051701793 -0.086404 68 35 SH4184 4184 telomerase RNA 5' 29.214341 151.062314 90.1383275 1.954909496 -0.048256 68 36 SH20573 20573 YHR012W spliced 33.418421 177.398472 105.4084465 2.022875413 0.043841 68 37 SH17319 17319 YIL004C_9_348502_347943_INTRON_12_142 5' exon 41.886892 235.99455 41.886892 195.107658 118.497275 2.073708363 0.040617 68 38 SH9225 9225 snR6 / U6 RNA 5' - 12 -4 12 29.256947 168.262761 98.759854 1.994580439 -0.132587 68 39 SH10406 10406 RUF8 5' 32.513601 178.59107 105.5523355 2.023467847 -0.000347 68 40 SH18602 18602 YNL069C_14_494998_493953_INTRON_29_477 intron 31.566369 185.190383 31.566369 154.624014 93.0951915 1.96892725 0.093562 68 41 SH12408 12408 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.827748 226.423217 33.827748 193.595469 113.7116085 2.055804803 -0.089013 68 42 SH10022 10022 RUF6 5' 31.814189 166.340531 99.07736 1.995974426 0.038805 68 43 SH7021 7021 snR60 3' 31.919186 153.010432 92.464809 1.965976477 0.125127 68 44 SH12167 12167 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7721 7738 42.796299 207.687623 125.241961 2.097749859 -0.08855 68 45 SH11758 11758 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5676 5689 27265.89771 27911.64742 27588.77257 4.440732379 -0.456552 68 46 SH12031 12031 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS/3'flank 7041 7063 29.923939 133.612621 81.76828 1.912584862 0.098399 68 47 SH721 721 Gln3 3' flank 42.935715 175.263601 109.099658 2.037823389 0.299831 68 48 SH10854 10854 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1156 1171 96.391998 294.618583 195.5052905 2.291158514 -0.135903 68 49 SH524 524 Cys1 5' flank 48.396291 179.535227 113.965759 2.056774387 0.317395 68 50 SH14663 14663 MT 21S rRNA 21S rRNA4 36.47109 230.064245 36.47109 194.593155 115.5321225 2.062702752 -0.043472 68 51 SH13973 13973 MT COB Cytbi3 29.983717 156.599465 29.983717 127.615748 78.7997325 1.896524743 0.138388 68 52 SH17446 17446 YIL148W_9_68708_69528_INTRON_9_442 5' exon 45.174389 255.884276 45.174389 211.709887 128.442138 2.108707526 -0.097341 68 53 SH8511 8511 snR19 / U1 RNA U1 51 72 29.994102 158.684363 94.3392325 1.974692339 -0.033466 68 54 SH4743 4743 snR4 3' 32.15948 187.331034 109.745257 2.04038576 -0.094091 68 55 SH6437 6437 snR45 snR45 31 50 38.659508 152.433025 95.5462665 1.980213722 0.474304 68 56 SH20106 20106 YDL061C spliced 32.145678 195.361392 113.753535 2.055964902 -0.165434 68 57 SH18343 18343 YML124C_13_23684_22049_INTRON_26_323 intron 32.125249 196.649549 32.125249 165.5243 98.8247745 1.994865832 0.061992 68 58 SH12087 12087 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7321 7338 35.331629 198.418848 116.8752385 2.06772251 -0.10833 68 59 SH7111 7111 snR63 snR63 61 78 29.869105 157.627648 93.7483765 1.971963756 -0.03672 68 60 SH9667 9667 RUF4 RUF4 111 127 31.937515 180.983772 106.4606435 2.027189087 -0.044221 68 61 SH18775 18775 YNL265C_14_145280_144279_INTRON_28_132 exon/intron 27.540321 170.749518 27.540321 144.209197 85.874759 1.933865531 -0.135899 68 62 SH7174 7174 snR64 5' 29.566905 144.38085 86.9738775 1.939388832 0.012715 68 63 SH20594 20594 YHR039C-A spliced 46.513687 229.311088 137.9123875 2.139603277 -0.255099 68 64 SH5496 5496 snR32 snR32 141 160 29.365437 138.742174 84.0538055 1.924557381 0.029361 68 65 SH11191 11191 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2841 2856 88.976246 262.459326 175.717786 2.244815723 0.009726 68 66 SH9469 9469 RUF2 RUF2 186 203 31.404881 187.694771 109.549826 2.039611692 -0.125808 68 67 SH5325 5325 snR30 snR30 476 488 190.757934 378.647541 284.7027375 2.454391643 0.114891 68 68 SH11511 11511 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4441 4458 8031.277177 5548.986775 6790.131976 3.831878216 0.529908 68 69 SH7872 7872 snoRNA cluster1 snR73 111.450296 449.86114 111.450296 339.410844 225.43057 2.353012809 -0.258439 68 70 SH19298 19298 YPL198W_16_173151_174701_INTRON_12_420 5' exon 31.576841 207.218356 31.576841 176.641515 104.109178 2.017489017 -0.036241 68 71 SH5272 5272 snR30 snR30 211 225 35.885249 178.990114 107.4376815 2.031156628 0.114084 68 72 SH7874 7874 snoRNA cluster1 snR73 27.386711 157.333332 27.386711 130.946621 79.166666 1.898542356 -0.069831 68 73 SH15377 15377 YBL027W_2_168385_169338_INTRON_3_386 intron 29.530322 190.68224 29.530322 162.151918 95.84112 1.98155188 -0.083317 68 74 SH12697 12697 MT ORF 8 (hypothetical) ORF8 29.534682 209.37715 29.534682 180.842468 105.188575 2.021968572 -0.185105 68 75 SH15342 15342 YAL030W_1_87288_87754_INTRON_103_215 3' exon 280.971765 850.008752 280.971765 570.036987 425.504376 2.628904031 -0.138834 68 76 SH12533 12533 MT_ORF6 + ORF7 (hypothetical) ORF6/7 31.670874 209.146906 31.670874 178.476032 105.073453 2.021493005 -0.041179 68 77 SH15074 15074 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 31.673561 223.453308 31.673561 192.779747 112.226654 2.050096015 -0.16071 68 78 SH7272 7272 snR65 3' 29.539736 143.423071 86.4814035 1.936922729 0.015966 68 79 SH12747 12747 MT COX1 COX1ai1 213.336281 617.819277 213.336281 405.482996 309.4096385 2.490533838 0.120034 68 80 SH5992 5992 snR36 3' 29.50846 140.496647 85.0025535 1.929431972 0.029801 68 81 SH3613 3613 Val1 tRNA 61 73 191.802656 462.16986 326.986258 2.514529501 -0.229851 68 82 SH19675 19675 SIR1 2.4 50.708955 206.587539 128.648247 2.109403873 0.033632 68 83 SH12007 12007 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6921 6943 29.349053 142.340733 85.844893 1.933714464 0.00823 68 84 SH2272 2272 Phe2 5' flank 29.286367 136.295599 82.790983 1.917983039 0.037547 68 85 SH3710 3710 Val3 tRNA 31 45 44.032799 184.252624 114.1427115 2.057448185 0.201417 68 86 SH17151 17151 YHR012W_8_129473_130440_INTRON_49_167 intron 31.303047 218.288161 31.303047 187.985114 109.6440805 2.03998519 -0.132307 68 87 SH20420 20420 YGL031C spliced 39.713462 199.360657 119.5370595 2.077502568 -0.04064 68 88 SH17429 17429 YIL133C_9_99416_98527_INTRON_32_321 intron 31.260555 201.856812 31.260555 171.596257 101.428406 2.0061596 -0.025618 68 89 SH9796 9796 RUF4 RUF4 756 772 31.240773 170.994385 101.117579 2.004826663 -0.023231 68 90 SH21569 21569 copy of SH5384 43.838068 209.134175 126.4861215 2.102042876 -0.088883 68 91 SH3113 3113 Ser4 5' flank 29.048259 137.521149 83.284704 1.920565247 0.013378 68 92 SH16159 16159 YDR129C_4_715372_713333_INTRON_22_132 intron 26.872565 139.37624 26.872565 113.503675 70.18812 1.84626361 0.010156 68 93 SH16797 16797 YGL137W_7_249872_252741_INTRON_19_218 5' exon 35.096626 246.666088 35.096626 212.569462 123.833044 2.092836549 -0.263084 68 94 SH18817 18817 YNL302C_14_62942_61957_INTRON_21_571 intron 34.922674 199.232736 34.922674 165.310062 100.116368 2.000505086 0.215678 68 95 SH6615 6615 snR48 5' 32.661831 159.051029 95.85643 1.98162125 0.133489 68 96 SH7001 7001 snR60 snR60 86 101 34.516977 163.239003 98.87799 1.995099629 0.210356 68 97 SH3993 3993 RNase MRP 3' 30.230293 151.329551 90.779922 1.957989805 0.021256 68 98 SH19573 19573 AEP2/ATP13 0.6 63.651908 257.403225 160.5275665 2.205549622 -0.252948 68 99 SH6274 6274 snR42 snR42 151 173 29.894333 135.835759 82.865046 1.918371376 0.083454 68 100 SH10171 10171 RUF6 RUF6 701 713 31.761885 179.688936 105.7254105 2.02417938 -0.042696 68 101 SH14833 14833 MT tRNA Asp 5' 31.632609 212.362104 31.632609 181.729495 106.681052 2.02808729 -0.062651 68 102 SH2291 2291 Phe2 tRNA-intron/exon 51 67 563.957892 819.353966 691.655929 2.839890104 0.120579 68 103 SH21185 21185 YOL047C spliced 31.425422 194.637314 113.031368 2.053198984 -0.186314 68 104 SH9530 9530 RUF3 RUF3 36 50 45.376292 214.883262 130.129777 2.114376686 -0.127982 69 2 SH16649 16649 YFR031C-A_6_221405_220494_INTRON_5_151 intron 36.443521 183.070677 36.443521 147.627156 92.0353385 1.963954614 0.414021 69 3 SH4711 4711 snR4 snR4 91 108 30.287172 138.111488 84.19933 1.925308636 0.098002 69 4 SH19127 19127 YPL075W_16_412249_415357_INTRON_9_759 intron 30.317293 198.294286 30.317293 168.976993 99.647143 1.998464851 -0.067266 69 5 SH11906 11906 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6416 6434 209.703237 399.78108 304.7421585 2.483932539 0.125422 69 6 SH6702 6702 snR49 snR49 36 52 50.970473 212.738163 131.854318 2.120094357 -0.027313 69 7 SH1212 1212 Ile1 tRNA 21 33 91.406872 254.587074 172.996973 2.238038504 0.094262 69 8 SH21925 21925 copy of SH20400 30.478037 168.56922 99.5236285 1.997926201 -0.054925 69 9 SH4826 4826 snR8 5' 30.518554 171.773078 101.145816 2.004947922 -0.071571 69 10 SH14582 14582 MT 21S rRNA intronic 28.498228 176.02956 28.498228 148.531332 88.51478 1.947015794 -0.086904 69 11 SH1508 1508 Leu3 tRNA 11 23 82.434696 222.312949 152.3738225 2.182910363 0.267206 69 12 SH9092 9092 snR14 / U4 RNA U4 76 92 34.754625 182.752948 108.7537865 2.036444387 0.040627 69 13 SH8165 8165 snoRNA cluster 3; snR70 53.450257 250.239579 53.450257 197.789322 125.6197895 2.099058061 0.165484 69 14 SH17747 17747 YKL157W_11_154993_158183_INTRON_282_664 intron 32.754089 236.482041 32.754089 204.727952 118.7410205 2.074600777 -0.230095 69 15 SH7587 7587 snR189 snR189 6 25 34.851963 166.896624 100.8742935 2.003780506 0.197132 69 16 SH10255 10255 RUF6 3' 30.728387 176.842832 103.7856095 2.01613714 -0.088314 69 17 SH2075 2075 Lys4 tRNA-intron 41 58 28.667168 171.882326 100.274747 2.001191575 -0.192091 69 18 SH5564 5564 snR33 snR33 106 122 28.668132 145.780716 87.224424 1.94063811 -0.059818 69 19 SH2895 2895 Pro8 5' flank - tRNA10 10 276.869492 562.914384 419.891938 2.623137536 -0.1355 69 20 SH11318 11318 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3476 3496 1891.721952 2612.966081 2252.344017 3.352634724 -0.164202 69 21 SH3889 3889 RNaseP 3' 28.664308 164.313217 96.4887625 1.984476736 -0.155815 69 22 SH16944 16944 YGR027C_7_534779_534126_INTRON_1_312 intron 30.752865 170.804827 30.752865 141.051962 85.9024135 1.934005366 0.113721 69 23 SH3290 3290 Thr2 tRNA 51 66 43.264751 187.786087 115.525419 2.062677552 0.147447 69 24 SH290 290 Arg4 46-58 46 58 45.433615 180.173078 112.8033465 2.052321984 0.271378 69 25 SH12906 12906 MT COX1 COX1ai2 30.925242 190.994023 30.925242 161.068781 95.9970115 1.982257713 0.017898 69 26 SH16838 16838 YGL178W_7_167356_170575_INTRON_4_643 intron 39.390187 219.579012 39.390187 181.188825 110.289506 2.042534191 0.166442 69 27 SH13758 13758 MT COB intronic 29.019876 202.341939 29.019876 174.322063 101.6709695 2.007196965 -0.180668 69 28 SH11720 11720 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5486 5499 103.082782 282.29213 192.687456 2.284853443 0.011135 69 29 SH18386 18386 YMR116C_13_500687_499455_INTRON_538_810 intron 31.299125 165.54631 31.299125 135.247185 83.273155 1.920505019 0.183552 69 30 SH8583 8583 snR19 / U1 RNA U1 411 426 37.711737 182.860021 110.285879 2.042519909 0.115639 69 31 SH11243 11243 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3101 3118 5348.565332 6964.669355 6156.617344 3.789342161 -0.357823 69 32 SH10321 10321 RUF7 RUF7 216 233 29.298078 168.717514 99.007796 1.995669393 -0.131858 69 33 SH7999 7999 snoRNA cluster 2 intergenic 29.28413 194.00002 29.28413 165.71589 97.50001 1.98900466 -0.118304 69 34 SH9875 9875 RUF5-1 RUF5-1 181 197 31.367587 141.611949 86.489768 1.936964732 0.151663 69 35 SH19810 19810 Negative Control 31.334228 162.918715 97.1264715 1.987337612 0.031506 69 36 SH618 618 Gln1 3' flank 39.763273 197.373786 118.5685295 2.073969434 -0.016998 69 37 SH13591 13591 MT ATP8/AAP1 5' 29.212765 154.722164 29.212765 126.509399 77.861082 1.891320435 0.091491 69 38 SH7750 7750 snoRNA cluster1 intergenic/snR76 77.03592 334.032777 77.03592 257.996857 167.5163885 2.224057301 -0.09043 69 39 SH8397 8397 snoRNA cluster 5 snR190 33.562118 195.441004 33.562118 162.878886 98.220502 1.992202149 0.160157 69 40 SH7088 7088 snR63 5' 31.548852 132.672455 82.1106535 1.914399509 0.215268 69 41 SH20418 20418 YGL030W spliced 35.938334 179.833746 107.88604 2.032965252 0.10792 69 42 SH12616 12616 MT_15S MT_15S 29.64428 182.205119 29.64428 153.560839 91.6025595 1.961907609 -0.031226 69 43 SH21727 21727 copy of SH11922 40.490875 157.67131 99.0810925 1.995990787 0.472735 69 44 SH9046 9046 snR17a / U3a 3' 29.808187 151.575406 90.6917965 1.957568005 -0.009241 69 45 SH6842 6842 snR52 3' 38.485942 189.75112 114.118531 2.057356173 0.04945 69 46 SH13553 13553 MT COX1 intronic 32.033315 187.993122 32.033315 156.959807 94.496561 1.975416004 0.110613 69 47 SH6084 6084 snR37 snR37 336 355 29.882882 157.78577 93.834326 1.972361739 -0.036576 69 48 SH14593 14593 MT 21S rRNA Sce1 endonuc 34.19806 227.247721 34.19806 194.049661 114.1238605 2.057376454 -0.082908 69 49 SH15015 15015 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 32.032899 193.377635 32.032899 162.344736 97.1888175 1.987616298 0.076316 69 50 SH3 3 Ala1 5' flank 34.183922 151.562557 92.8732395 1.967890594 0.267635 69 51 SH19126 19126 YPL075W_16_412249_415357_INTRON_9_759 exon/intron 32.018916 212.540715 32.018916 181.521799 106.7703575 2.028450697 -0.046181 69 52 SH1514 1514 Leu3 tRNA-intron 41 57 34.168763 175.400415 104.784589 2.020297414 0.089554 69 53 SH8948 8948 snR17a / U3a U3a 26 42 32.004855 161.069355 96.537105 1.984694271 0.082692 69 54 SH9378 9378 RUF1 RUF1 466 481 86.194933 257.315551 171.755242 2.234910001 0.018617 69 55 SH1314 1314 Ile3 5' flank 29.83561 159.139185 94.4873975 1.975373887 -0.04678 69 56 SH14245 14245 MT tRNA Ser tRNA 27.672497 180.594642 27.672497 153.922145 90.797321 1.958073035 -0.176612 69 57 SH15883 15883 YDL082W_4_308423_309387_INTRON_5_369 intron 27.653197 181.604767 27.653197 154.95157 91.3023835 1.960482115 -0.183276 69 58 SH17440 17440 YIL133C_9_99416_98527_INTRON_32_321 intron 27.618794 162.265103 27.618794 135.646309 81.6325515 1.911863371 -0.081698 69 59 SH18571 18571 YNL012W_14_609682_611661_INTRON_106_189 intron/exon 27.563428 172.592488 27.563428 146.02906 86.796244 1.938500932 -0.143906 69 60 SH819 819 Glu1 3' flank 29.622724 136.668544 83.145634 1.919839449 0.059468 69 61 SH6155 6155 snR39B 3' 27.388084 137.154552 82.271318 1.915248455 -0.108114 69 62 SH13782 13782 MT COB intronic 27.283584 193.805257 27.283584 167.521673 97.4026285 1.988570677 -0.273933 69 63 SH15512 15512 YBR048W_2_332790_333771_INTRON_46_556 intron 69.713995 305.621498 69.713995 236.907503 153.310749 2.185572605 -0.00671 69 64 SH12807 12807 MT COX1 COX1ai1 31.334936 208.868844 31.334936 178.533908 104.934422 2.020917975 -0.061443 69 65 SH3487 3487 Tyr1 5' flank 29.183684 150.07218 89.627932 1.952443376 -0.045108 69 66 SH10781 10781 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 791 809 29.184554 161.924247 95.5544005 1.980250692 -0.106622 69 67 SH3521 3521 Tyr1 3' flank 29.220988 172.94046 101.080724 2.004668344 -0.159673 69 68 SH898 898 Glu3 tRNA 1 17 3108.224989 2759.032349 2933.628669 3.467405141 0.404458 69 69 SH1072 1072 Gly3 3' flank 29.34774 189.111688 109.229714 2.038340797 -0.242403 69 70 SH754 754 Gln4 tRNA 41 53 35.786044 201.062958 118.424501 2.073441563 -0.12812 69 71 SH6219 6219 snR40 3' 29.454755 169.903633 99.679194 1.998604518 -0.126778 69 72 SH19528 19528 CBP1 1.2 46.556788 205.815834 126.186311 2.101012244 -0.01466 69 73 SH3831 3831 RNaseP RNaseP 121 135 29.492939 175.59121 102.5420745 2.010902099 -0.15781 69 74 SH16138 16138 YDR092W_4_629869_630598_INTRON_31_298 exon/intron 29.493482 197.606032 29.493482 169.11255 99.303016 1.996962439 -0.119957 69 75 SH1831 1831 Leu8 3' flank 29.490585 149.429958 89.4602715 1.951630212 -0.019923 69 76 SH10224 10224 RUF6 RUF6 966 980 105.464738 276.008619 190.7366785 2.280434216 0.076412 69 77 SH12663 12663 MT_15S MT_15S 55.140997 273.058355 55.140997 218.917358 137.0291775 2.136813051 -0.032643 69 78 SH15471 15471 YBL087C_2_60732_59815_INTRON_43_546 3' exon 35.88865 214.837244 35.88865 179.948594 107.918622 2.033096391 0.105185 69 79 SH1192 1192 Ile1 5' flank 31.618813 187.458777 109.538795 2.039567959 -0.115552 69 80 SH18691 18691 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.47312 185.248947 29.47312 156.775827 93.1244735 1.96906383 -0.060028 69 81 SH5805 5805 snR35 snR35 211 228 59.320083 241.500394 150.4102385 2.1772774 -0.181356 69 82 SH19790 19790 Negative Control 31.523997 164.009093 97.766545 1.990190268 0.036016 69 83 SH10579 10579 RUF8 RUF8 821 838 29.354423 160.223709 94.789066 1.976758244 -0.086025 69 84 SH20479 20479 YGL226C-A spliced 29.31224 153.746405 91.5293225 1.961560248 -0.05558 69 85 SH6254 6254 snR42 snR42 51 67 29.282785 127.115242 78.1990135 1.893201274 0.092455 69 86 SH10112 10112 RUF6 RUF6 406 423 27.15886 178.185995 102.6724275 2.01145383 -0.333437 69 87 SH6779 6779 snR50 snR50 71 85 54.703247 202.451516 128.5773815 2.109164577 0.130209 69 88 SH1802 1802 Leu8 tRNA-exon/intron 36 51 31.393434 158.253298 94.823366 1.976915368 0.063367 69 89 SH5577 5577 snR33 166-183 + 3' 171 31.396573 183.755565 107.576069 2.03171567 -0.090333 69 90 SH19360 19360 YPR028W_16_623522_624197_INTRON_52_184 5' exon 31.37992 184.612895 31.37992 154.232975 92.8064475 1.967578149 0.083319 69 91 SH3150 3150 Ser4 3' flank 31.331736 148.533014 89.932375 1.953916063 0.110635 69 92 SH20156 20156 YDL125C spliced 31.245081 159.381179 95.31313 1.979152732 0.047783 69 93 SH4749 4749 snR5 5' 1400.380875 1659.935108 1530.157992 3.184736275 0.151514 69 94 SH6340 6340 snR43 5' 30.958221 172.952851 101.955536 2.008410812 -0.051786 69 95 SH20908 20908 YLR316C spliced 30.771916 163.7131 97.242508 1.987856151 -0.007288 69 96 SH5486 5486 snR32 snR32 91 108 30.571573 168.740473 99.656023 1.998503552 -0.050229 69 97 SH21348 21348 YPR132W spliced 34.465879 187.783626 111.1247525 2.045810807 -0.015191 69 98 SH18320 18320 YML085C_13_99400_97941_INTRON_26_141 intron 40.364256 189.506914 40.364256 150.142658 95.253457 1.978880746 0.551544 69 99 SH870 870 Glu2 3' flank 29.993501 134.533924 82.2637125 1.915208305 0.097934 69 100 SH12189 12189 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7831 7849 62.217336 206.981569 134.5994525 2.129043293 0.178203 69 101 SH9151 9151 snR7 U5 RNA U5 26 38 968.392535 1140.926325 1054.65943 3.02311224 0.269684 69 102 SH18066 18066 YLR344W_12_819312_820142_INTRON_20_466 intron 37.575647 196.685847 37.575647 160.1102 98.8429235 1.994945582 0.357322 69 103 SH4855 4855 snR8 snR8 56 72 783.939809 855.648733 819.794271 2.913704879 0.464718 69 104 SH4969 4969 snR9 3' 43.357386 192.329313 117.8433495 2.071305078 0.0941 70 2 SH11303 11303 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3401 3418 356.438362 635.760634 496.099498 2.695568788 -0.032255 70 3 SH18252 18252 YML034W_13_209525_212155_INTRON_1921_2046 intron 28.036234 159.781805 28.036234 132.745571 80.3909025 1.905206904 -0.032931 70 4 SH2325 2325 Phe3 5' flank 34.168539 197.354385 115.761462 2.063564003 -0.120297 70 5 SH8943 8943 snR17a / U3a U3a 1 15 32.159633 161.373488 96.7665605 1.985725305 0.089795 70 6 SH3090 3090 Ser3 3' flank 32.198535 175.947242 104.0728885 2.017337608 0.004208 70 7 SH7089 7089 snR63 5' 32.245575 140.230522 86.2380485 1.93569892 0.216895 70 8 SH8200 8200 snoRNA cluster 3; intergenic 54.821271 280.211862 54.821271 226.390591 140.605931 2.14800364 -0.108439 70 9 SH14014 14014 MT COB intron/exon4 30.312494 203.774929 30.312494 174.462435 102.3874645 2.010246788 -0.10002 70 10 SH19344 19344 YPL249C-A_16_76239_75699_INTRON_17_254 5' exon 1040.701193 2549.03723 1040.701193 1509.336037 1275.018615 3.105516525 -0.084257 70 11 SH13456 13456 MT COX1 intronic 30.426057 198.696657 30.426057 169.2706 99.8483285 1.999340799 -0.062335 70 12 SH503 503 Asp2 3' flank 30.483773 129.757229 80.120501 1.903743656 0.160254 70 13 SH2543 2543 Pro2 5' flank 30.540837 160.082328 95.3115825 1.97914568 -0.003084 70 14 SH14129 14129 MT COB intronic 28.534944 182.390949 28.534944 154.856005 91.6954745 1.962347902 -0.117181 70 15 SH5885 5885 snR35 3' 30.645765 203.716423 117.181094 2.068857548 -0.293342 70 16 SH7572 7572 snR189 5' 28.621928 138.301399 83.4616635 1.921487037 -0.022171 70 17 SH7479 7479 snR71 snR71 11 27 74.438306 245.84388 160.141093 2.204502788 -0.024357 70 18 SH14654 14654 MT 21S rRNA 21S rRNA4 30.751697 186.277306 30.751697 156.525609 93.638653 1.971455158 0.029397 70 19 SH10433 10433 RUF8 RUF8 91 108 30.774577 138.752351 84.763464 1.928208697 0.128017 70 20 SH548 548 Cys1 tRNA 41 56 62.06388 178.792029 120.4279545 2.08072731 0.490147 70 21 SH10479 10479 RUF8 RUF8 321 338 30.827801 179.018813 104.923307 2.02087197 -0.094702 70 22 SH18145 18145 YLR406C_12_931752_931062_INTRON_58_406 intron 30.869642 194.988826 30.869642 165.119184 97.994413 1.991201316 -0.010049 70 23 SH15910 15910 YDL083C_4_307788_306925_INTRON_25_456 intron 28.843192 168.806918 28.843192 140.963726 84.903459 1.928925384 -0.020811 70 24 SH11777 11777 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5771 5786 100.316628 239.628382 169.972505 2.230378675 0.299876 70 25 SH1108 1108 Gly4 tRNA 16 31 31.08535 149.254515 90.1699325 1.955061745 0.090326 70 26 SH3721 3721 Val3 3' flank 29.077877 141.469381 85.273629 1.930814746 -0.006535 70 27 SH14571 14571 MT 21S rRNA 21S rRNA3 37.600692 233.707121 37.600692 197.106429 117.3535605 2.069496271 -0.04984 70 28 SH11670 11670 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5236 5253 6458.910951 3430.468883 4944.689917 3.694139062 1.012341 70 29 SH13404 13404 MT COX1 intronic 33.545588 217.668603 33.545588 185.123015 109.3343015 2.038756435 -0.023532 70 30 SH15046 15046 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.355272 182.907886 29.355272 154.552614 91.953943 1.963570357 -0.056773 70 31 SH160 160 Arg2 5' flank 35.745577 169.111273 102.428425 2.010420495 0.205215 70 32 SH599 599 Gln1 tRNA 36 50 69.870205 227.31504 148.5926225 2.171997248 0.079187 70 33 SH16499 16499 YER117W_5_396765_397649_INTRON_43_513 intron 29.350082 205.912328 29.350082 177.562246 103.456164 2.014756371 -0.178228 70 34 SH6617 6617 snR48 5' 31.431057 133.244838 82.3379475 1.915600037 0.204035 70 35 SH13832 13832 MT COB Cytbi2 29.278492 179.436253 29.278492 151.157761 90.2181265 1.955293804 -0.044215 70 36 SH21116 21116 YNL096C spliced 31.367933 177.895609 104.631771 2.019663576 -0.055837 70 37 SH3815 3815 RNaseP RNaseP 41 53 33.483644 169.854711 101.6691775 2.00718931 0.113173 70 38 SH17540 17540 YJL177W_10_90783_91654_INTRON_310_626 intron 142.464768 490.215227 142.464768 348.750459 245.6076135 2.390241825 -0.054117 70 39 SH20784 20784 YKL006W spliced 31.473655 150.817807 91.145731 1.959736332 0.107648 70 40 SH9458 9458 RUF2 RUF2 131 150 31.568467 180.0254 105.7969335 2.02447308 -0.056016 70 41 SH21330 21330 YPR043W spliced 55.229246 242.416032 148.822639 2.172669001 -0.247451 70 42 SH11952 11952 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6646 6661 20393.71985 16646.49822 18520.10903 4.267643539 -0.011788 70 43 SH16407 16407 YER056C-A_5_270183_269421_INTRON_38_434 intron 31.873738 190.628582 31.873738 159.754844 95.814291 1.98143029 0.083344 70 44 SH11802 11802 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5896 5913 2408.451307 3383.733927 2896.092617 3.461812446 -0.251326 70 45 SH7309 7309 snR66 snR66 36 53 31.979144 180.412087 106.1956155 2.026106586 -0.037322 70 46 SH20815 20815 YKL190W spliced 29.838074 174.374183 102.1061285 2.00905181 -0.128995 70 47 SH19947 19947 YBL040C spliced 31.987779 171.919254 101.9535165 2.00840221 0.015462 70 48 SH19333 19333 YPL218W_16_138697_139408_INTRON_29_167 3' exon 34.125165 231.223658 34.125165 198.098493 116.111829 2.064876466 -0.129392 70 49 SH12288 12288 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.100294 201.856835 34.100294 168.756541 101.4284175 2.00615965 0.152311 70 50 SH3475 3475 Tyr1 5' flank 40.534918 167.021382 103.77815 2.016105924 0.36403 70 51 SH19329 19329 YPL218W_16_138697_139408_INTRON_29_167 intron 29.750847 167.388425 29.750847 138.637578 84.1942125 1.925282239 0.05741 70 52 SH16476 16476 YER102W_5_362729_363698_INTRON_1_360 intron 31.876926 219.923083 31.876926 189.046157 110.4615415 2.0432111 -0.120042 70 53 SH12990 12990 MT COX1 COX1ai2 29.713178 200.025532 29.713178 171.312354 100.512766 2.002221224 -0.118837 70 54 SH18872 18872 YNR053C_14_723108_721117_INTRON_811_1341 intron 29.698685 152.510362 29.698685 123.811677 76.755181 1.8851077 0.143282 70 55 SH596 596 Gln1 tRNA 21 37 36.119865 159.663366 97.8916155 1.990745496 0.314704 70 56 SH11046 11046 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2116 2134 33900.97616 32448.37415 33174.67516 4.520806679 -0.413033 70 57 SH2385 2385 Phe4 5' flank 31.790582 171.878295 101.8344385 2.007894673 0.004144 70 58 SH12190 12190 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7836 7853 146.135745 341.046874 243.5913095 2.38666179 0.013599 70 59 SH11562 11562 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4696 4711 13147.5563 4237.728239 8692.642271 3.939151807 1.596753 70 60 SH1034 1034 Gly3 5' flank 29.470801 163.469183 96.469992 1.984392243 -0.094059 70 61 SH8648 8648 snR19 / U1 RNA 3' 29.369217 133.981756 81.6754865 1.91209173 0.05684 70 62 SH11246 11246 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3116 3135 2243.827087 3882.287945 3063.057516 3.486155152 -0.560502 70 63 SH11610 11610 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4936 4951 298.333758 481.417871 389.8758145 2.590926295 0.217625 70 64 SH5525 5525 snR33 5' 57.571458 216.733147 137.1523025 2.137203103 0.021412 70 65 SH3820 3820 RNaseP RNaseP 66 84 33.262856 179.414587 106.3387215 2.026691435 0.019182 70 66 SH12020 12020 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6986 7003 141.422933 345.163737 243.293335 2.386130212 -0.04289 70 67 SH16587 16587 YFL034C-A_6_64931_64242_INTRON_13_333 intron 29.115066 183.496506 29.115066 155.38144 92.248253 1.96495815 -0.078157 70 68 SH13408 13408 MT COX1 intronic 35.506026 246.942414 35.506026 212.436388 123.971207 2.09332083 -0.253515 70 69 SH2329 2329 Phe3 5' flank 31.35906 157.613196 94.486128 1.975368052 0.064376 70 70 SH12230 12230 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.781425 193.588372 37.781425 156.806947 97.294186 1.988086889 0.399043 70 71 SH19856 19856 Negative Control 31.466883 198.610688 115.0387855 2.060844288 -0.218836 70 72 SH15151 15151 MT tRNA Thr1 reverse complement 3' 29.369362 174.854185 29.369362 146.484823 87.9270925 1.944122713 -0.012677 70 73 SH11875 11875 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6261 6274 320.440685 327.528626 323.9846555 2.510524442 0.957746 70 74 SH6800 6800 snR52 5' 29.374212 143.906172 86.640192 1.937719406 0.001511 70 75 SH446 446 Asp1 tRNA 51 65 31.493727 160.319254 95.9064905 1.981847999 0.057339 70 76 SH17229 17229 YHR077C_8_255757_252375_INTRON_7_119 intron 31.497031 186.015901 31.497031 155.51887 93.5079505 1.970848538 0.084324 70 77 SH4884 4884 snR8 3' 29.384776 138.882732 84.133754 1.924970267 0.029958 70 78 SH6047 6047 snR37 snR37 151 167 235.509749 454.138382 344.8240655 2.537597568 0.036819 70 79 SH7137 7137 snR63 snR63 191 210 33.656386 184.664497 109.1604415 2.038065284 -0.015398 70 80 SH11677 11677 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5271 5287 8349.423945 5635.853963 6992.638954 3.844641105 0.555473 70 81 SH4290 4290 telomerase RNA telomerase 486 505 29.394569 156.503513 92.949041 1.968244913 -0.064158 70 82 SH5155 5155 snR13 5' 27.252707 148.792876 88.0227915 1.944595137 -0.182394 70 83 SH9815 9815 RUF4 3' 29.345617 144.694693 87.020155 1.939619853 -0.004799 70 84 SH6147 6147 snR39B snR39B 76 90 78.277614 229.724915 154.0012645 2.187524287 0.155785 70 85 SH15385 15385 YBL027W_2_168385_169338_INTRON_3_386 3' exon 46.282957 215.08079 46.282957 169.797833 108.040395 2.033586163 0.41803 70 86 SH1104 1104 Gly4 5' flank - tRNA8 8 37.801619 176.19112 106.9963695 2.029369042 0.198236 70 87 SH16038 16038 YDL191W_4_117665_118518_INTRON_4_494 intron 29.348704 179.342644 29.348704 150.99394 90.171322 1.955068437 -0.038366 70 88 SH2528 2528 Pro1 3' flank 31.495675 179.901999 105.698837 2.024070209 -0.059634 70 89 SH15463 15463 YBL087C_2_60732_59815_INTRON_43_546 intron 29.394207 197.99944 29.394207 169.605233 99.49972 1.997821859 -0.129311 70 90 SH13363 13363 MT COX1 intronic 31.513109 249.776267 31.513109 219.263158 125.3881335 2.098256438 -0.406805 70 91 SH12051 12051 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7141 7154 33.596174 212.446027 123.0211005 2.089979608 -0.292731 70 92 SH7535 7535 snR79 snR79 16 33 33.511631 147.946914 90.7292725 1.957747429 0.253425 70 93 SH16528 16528 YER131W_5_423587_424307_INTRON_1_361 intron 104.320807 357.961464 104.320807 254.640657 179.480732 2.254017832 0.219871 70 94 SH14588 14588 MT 21S rRNA Sce1 endonuc 31.113884 192.887983 31.113884 162.774099 96.9439915 1.986520897 0.019216 70 95 SH6046 6046 snR37 snR37 146 162 142.376238 318.002222 230.18923 2.362085 0.11451 70 96 SH636 636 Gln2 5' flank 30.719679 170.637801 100.67874 2.002937772 -0.052554 70 97 SH5439 5439 snR31 3' 37.716026 218.134671 127.9253485 2.106956609 -0.277276 70 98 SH20791 20791 YKL156W spliced 40.539476 195.723574 118.131525 2.07236581 0.013791 70 99 SH7564 7564 snR79 3' 30.113029 172.664292 101.3886605 2.005989385 -0.101835 70 100 SH19706 19706 Negative Control 30.948677 164.834558 97.8916175 1.990745505 -0.003516 70 101 SH12184 12184 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7806 7823 33.808291 202.391645 118.099968 2.07224978 -0.182687 70 102 SH21296 21296 YPL198W spliced 31.644316 173.497754 102.571035 2.011024738 -0.014005 70 103 SH8381 8381 snoRNA cluster 5 5' 41.547591 234.707086 41.547591 194.159495 117.853543 2.071342643 0.046868 70 104 SH12786 12786 MT COX1 COX1ai1 76.853083 329.282573 76.853083 253.42949 165.1412865 2.217855664 -0.056824 71 2 SH11393 11393 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3851 3868 49726.08275 44169.05257 46947.56766 4.671613097 -0.404766 71 3 SH4464 4464 telomerase RNA 3' 38.025573 196.131683 117.078628 2.068477624 -0.031093 71 4 SH12312 12312 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.969713 224.793896 33.969713 191.824183 112.896948 2.052682202 -0.068485 71 5 SH17491 17491 YJL041W_10_365480_368069_INTRON_2_119 5' exon 70.651602 293.942322 70.651602 224.29072 147.471161 2.168707099 0.115895 71 6 SH2117 2117 Met1 5' flank 27.962471 148.418262 88.1903665 1.945421147 -0.126281 71 7 SH20253 20253 YDR381W spliced 32.061179 190.518769 111.289974 2.046456041 -0.126231 71 8 SH8011 8011 snoRNA cluster 2 intergenic 28.067822 182.311467 28.067822 155.243645 91.6557335 1.962159637 -0.153461 71 9 SH21636 21636 copy of SH8141 2530.614164 2000.060562 2265.337363 3.355132888 0.638382 71 10 SH21126 21126 YNL130C spliced 29.221221 143.437188 86.3292045 1.936157739 -0.006943 71 11 SH15161 15161 MT tRNA Val 5' / tRNA 34.407266 187.516752 34.407266 154.109486 94.258376 1.974319953 0.262878 71 12 SH5730 5730 snR34 3' 34.49993 149.730229 92.1150795 1.964330731 0.297195 71 13 SH17732 17732 YKL156W_11_158616_159214_INTRON_4_353 intron 36.649626 225.582903 36.649626 189.933277 113.2914515 2.054197141 0.012772 71 14 SH3949 3949 RNase MRP RNaseMRP 161 173 51.212462 228.778391 139.9954265 2.146113848 -0.182424 71 15 SH10209 10209 RUF6 RUF6 891 905 175.811957 381.498775 278.655366 2.445067411 0.011035 71 16 SH3019 3019 Ser2 tRNA 56 68 80.648365 221.525653 151.087009 2.179227124 0.254886 71 17 SH12462 12462 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 41375.9204 67799.48482 41375.9204 26424.56442 33900.24241 4.530202804 0.17158 71 18 SH4716 4716 snR4 snR4 116 130 125.424464 312.958428 219.191446 2.340823602 0.013242 71 19 SH10622 10622 RUF8 3' 30.862688 169.898767 100.3807275 2.001650339 -0.039462 71 20 SH4094 4094 SRP RNA SRP RNA 361 375 32.995414 159.184415 96.0899145 1.982677807 0.151633 71 21 SH16007 16007 YDL137W_4_216158_217074_INTRON_1_332 intron 736.57566 1558.220302 736.57566 822.644642 779.610151 2.891877485 0.449826 71 22 SH8699 8699 LSR1 / U2 RNA U2 136 148 1165.593461 1541.323282 1353.458372 3.131444903 0.029517 71 23 SH8376 8376 snoRNA cluster 5 5' 29.008112 196.355122 29.008112 168.34701 98.677561 1.994218407 -0.150718 71 24 SH875 875 Glu2 3' flank 33.290978 185.251949 109.2714635 2.03850676 -0.033834 71 25 SH11718 11718 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5476 5492 2947.611774 4078.400445 3513.00611 3.545678905 -0.281767 71 26 SH11146 11146 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2616 2633 22331.20848 16728.60324 19529.90586 4.29070015 0.097984 71 27 SH20872 20872 YLR128W spliced 31.454259 184.859852 108.1570555 2.034054855 -0.098244 71 28 SH5844 5844 snR35 snR35 406 425 31.526199 141.846979 86.686589 1.937951914 0.160787 71 29 SH10585 10585 RUF8 RUF8 851 867 31.5801 163.586585 97.5833425 1.98937569 0.041961 71 30 SH5215 5215 snR30 5' 31.612036 141.33556 86.473798 1.936884534 0.169356 71 31 SH21428 21428 Tyr1_2 spliced 44.426646 215.073995 129.7503205 2.113108439 -0.143419 71 32 SH3621 3621 Val1 3' flank 27.349774 137.047949 82.1988615 1.914865802 -0.110349 71 33 SH18681 18681 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.320962 154.988792 27.320962 128.66783 77.994396 1.892063399 -0.060225 71 34 SH11196 11196 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2866 2888 29.404719 168.895495 99.150107 1.996293187 -0.125172 71 35 SH6196 6196 snR40 snR40 41 56 31.485203 178.289815 104.887509 2.020723771 -0.05111 71 36 SH9178 9178 snR7 U5 RNA U5 161 179 71.913605 229.144906 150.5292555 2.177620914 0.087496 71 37 SH11425 11425 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4011 4026 517.197666 636.368467 576.7830665 2.761012502 0.425656 71 38 SH15295 15295 MT 9S rRNA 9S / 3' 29.358289 164.815167 29.358289 136.456878 82.9075835 1.918594257 0.041791 71 39 SH3246 3246 Thr1 3' flank 31.534846 177.250543 104.3926945 2.018670107 -0.042225 71 40 SH13650 13650 MT ATP6 ATP6 31.615292 187.833626 31.615292 157.218334 94.416813 1.975049337 0.083297 71 41 SH7884 7884 snoRNA cluster1 snR73 103.639284 374.835034 103.639284 272.19575 187.917517 2.273967265 0.086016 71 42 SH1580 1580 Leu4 tRNA-intron/exon 71 87 163.324353 411.573893 287.449123 2.458560988 -0.205491 71 43 SH21168 21168 YNL302C spliced 36.174377 181.255838 108.7151075 2.0362899 0.10247 71 44 SH4754 4754 snR5 5' 30.853555 148.937594 89.8955745 1.953738312 0.076515 71 45 SH7245 7245 snR65 snR65 1 23 29.803575 150.579581 90.191578 1.955165985 -0.004222 71 46 SH4357 4357 telomerase RNA telomerase 821 840 29.805369 154.205142 92.0052555 1.963812636 -0.023371 71 47 SH21408 21408 Ser3 spliced 31.939689 166.77669 99.3581895 1.997203669 0.043504 71 48 SH14056 14056 MT COB Cytbi4 29.759069 201.586201 29.759069 172.827132 101.2931005 2.005579865 -0.124897 71 49 SH21728 21728 copy of SH11923 38.316318 172.677306 105.496812 2.023239336 0.251677 71 50 SH13110 13110 MT COX1 COX1ai3 29.685421 214.130008 29.685421 185.444587 107.565004 2.031670998 -0.201121 71 51 SH1733 1733 Leu7 5' flank 33.931853 162.738908 98.3353805 1.992709803 0.181512 71 52 SH18389 18389 YMR116C_13_500687_499455_INTRON_538_810 intron 29.617098 169.666703 29.617098 141.049605 85.3333515 1.931118803 0.034479 71 53 SH18857 18857 YNR053C_14_723108_721117_INTRON_811_1341 intron 29.59018 188.004962 29.59018 159.414782 94.502481 1.97544321 -0.065324 71 54 SH4987 4987 snR10 5' 29.568961 127.657441 78.613201 1.89549548 0.108929 71 55 SH7230 7230 snR65 5' 31.68567 148.31636 90.001015 1.954247407 0.13513 71 56 SH21143 21143 YNL162W spliced 34.869828 187.148543 111.0091855 2.045358916 0.004484 71 57 SH15661 15661 YBR189W_2_604466_605466_INTRON_8_420 intron 29.513757 185.682339 29.513757 157.168582 93.3411695 1.970073238 -0.059195 71 58 SH15560 15560 YBR082C_2_407127_406586_INTRON_48_142 intron/exon 42.270071 236.107776 42.270071 194.837705 118.553888 2.073915801 0.049246 71 59 SH18138 18138 YLR406C_12_931752_931062_INTRON_58_406 intron 30.483446 173.338605 30.483446 143.855159 87.1693025 1.940363571 0.079596 71 60 SH6321 6321 snR42 3' 29.341991 175.04582 102.1939055 2.009424997 -0.164242 71 61 SH15601 15601 YBR089C-A_2_426588_426148_INTRON_1_114 3' exon 29.244603 201.524464 29.244603 173.279861 101.262232 2.005447496 -0.160155 71 62 SH7900 7900 snoRNA cluster1 intergenic 31.245916 184.317969 31.245916 154.072053 92.6589845 1.966887536 0.075283 71 63 SH19142 19142 YPL075W_16_412249_415357_INTRON_9_759 intron 60.649271 244.844817 60.649271 185.195546 122.9224085 2.089631061 0.396954 71 64 SH1305 1305 Ile3 5' flank 43.662921 203.268075 123.465498 2.091545612 -0.027416 71 65 SH3009 3009 Ser2 tRNA 6 18 925.743149 1407.925378 1166.834264 3.067009173 -0.124673 71 66 SH7829 7829 snoRNA cluster1 intergenic 28.954497 197.863634 28.954497 169.909137 99.431817 1.997525376 -0.16204 71 67 SH10155 10155 RUF6 RUF6 621 641 28.991003 143.359019 86.175011 1.935381348 -0.023177 71 68 SH9862 9862 RUF5-1 RUF5-1 116 134 31.142831 201.864779 116.503805 2.06634011 -0.25866 71 69 SH13032 13032 MT COX1 COX1ai2 29.101192 163.262637 29.101192 135.161445 82.1313185 1.914508795 0.0307 71 70 SH9224 9224 snR6 / U6 RNA 5' - 6 -9 6 29.148044 151.337648 90.242846 1.955412783 -0.054446 71 71 SH12418 12418 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.178653 162.530329 29.178653 134.351676 81.7651645 1.912568315 0.040982 71 72 SH21684 21684 copy of SH10239 29.192627 153.660986 91.4268065 1.96107355 -0.063616 71 73 SH2398 2398 Phe4 tRNA-intron/exon 41 57 31.303765 165.541015 98.42239 1.993093907 0.013465 71 74 SH13566 13566 MT COX1 Exon 6 29.193841 211.293479 29.193841 183.099638 106.1467395 2.025906659 -0.219407 71 75 SH18005 18005 YLR287C-A_12_713158_712537_INTRON_4_433 intron 69.466466 268.679852 69.466466 200.213386 134.839926 2.129818506 0.335491 71 76 SH3169 3169 Ser5 5' flank 29.211248 131.050139 80.1306935 1.903798901 0.062723 71 77 SH9849 9849 RUF5-1 RUF5-1 51 69 29.2358 180.891833 105.0638165 2.021453173 -0.204397 71 78 SH10061 10061 RUF6 RUF6 151 172 29.266791 150.67301 89.9699005 1.95409724 -0.042443 71 79 SH9310 9310 RUF1 RUF1 126 142 30.354549 139.690861 85.022705 1.929534918 0.093821 71 80 SH17652 17652 YJR145C_10_702761_701720_INTRON_15_270 intron 29.318744 158.762312 29.318744 130.443568 79.881156 1.902444341 0.074074 71 81 SH19082 19082 YOR293W_15_867094_867848_INTRON_53_489 intron 29.32883 173.837335 29.32883 145.508505 87.4186675 1.941604182 -0.010375 71 82 SH21603 21603 copy of SH6674 29.328655 177.025051 103.176853 2.013582277 -0.176515 71 83 SH956 956 Gly1 tRNA 31 45 39.923368 185.394173 112.6587705 2.051765007 0.125984 71 84 SH21243 21243 YOR312C spliced 29.32464 173.141198 101.232919 2.00532176 -0.154232 71 85 SH11435 11435 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4061 4078 74.028512 225.210715 149.6196135 2.174988529 0.147422 71 86 SH17233 17233 YHR077C_8_255757_252375_INTRON_7_119 intron 30.420692 194.990717 30.420692 165.570025 97.9953585 1.991205506 -0.040206 71 87 SH15382 15382 YBL027W_2_168385_169338_INTRON_3_386 intron 29.396911 205.197579 29.396911 176.800668 103.0987895 2.013253566 -0.170881 71 88 SH18511 18511 YMR201C_13_667043_665844_INTRON_28_111 5' exon 33.684951 206.64602 33.684951 173.961069 103.82301 2.016293616 0.086375 71 89 SH12738 12738 MT COX1 COX1ai1 33.71638 185.067813 33.71638 152.351433 93.0339065 1.968641257 0.236616 71 90 SH12352 12352 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.466408 207.481058 29.466408 179.01465 104.240529 2.018036607 -0.179111 71 91 SH15211 15211 MT COX3 cox3 29.438106 203.996693 29.438106 175.558587 102.4983465 2.010716859 -0.1611 71 92 SH17831 17831 YKR094C_11_618384_617630_INTRON_9_376 intron 31.491365 226.815317 31.491365 196.323952 113.9076585 2.056552925 -0.198363 71 93 SH8636 8636 snR19 / U1 RNA 3' 31.376959 151.733468 91.5552135 1.96168308 0.096359 71 94 SH7992 7992 snoRNA cluster 2 intergenic 29.121596 154.830663 29.121596 126.709067 77.9153315 1.891622923 0.083755 71 95 SH4530 4530 U3b (snR17b) U3b 206 220 91.132089 241.060019 166.096054 2.220359315 0.198054 71 96 SH15553 15553 YBR082C_2_407127_406586_INTRON_48_142 5' exon 32.921565 202.868685 32.921565 170.94712 101.9343425 2.008320526 0.075013 71 97 SH250 250 Arg3 3' flank 28.570482 159.22142 93.895951 1.972646865 -0.137119 71 98 SH3320 3320 Thr3 5' flank 28.378805 131.582377 79.980591 1.902984609 -0.00066 71 99 SH1230 1230 Ile1 3' flank 32.275469 205.742841 119.009155 2.075580372 -0.251279 71 100 SH3960 3960 RNase MRP RNaseMRP 216 232 31.068988 146.851047 88.9600175 1.94919486 0.102384 71 101 SH1151 1151 His1 5' flank 29.889124 142.203641 86.0463825 1.934732617 0.047384 71 102 SH13833 13833 MT COB Cytbi2 29.738137 167.591941 29.738137 138.853804 84.2959705 1.925806815 0.055296 71 103 SH13263 13263 MT COX1 COX1-ai4 29.59859 168.053817 29.59859 139.455227 84.5269085 1.926994985 0.042022 71 104 SH20999 20999 YML085C spliced 29.466603 158.201034 93.8338185 1.97235939 -0.067818 72 2 SH13658 13658 MT ATP6 ATP6 31.790917 192.536235 31.790917 161.745318 96.7681175 1.985732292 0.065899 72 3 SH14457 14457 MT 21S rRNA 21S rRNA3 27.754971 183.943054 27.754971 157.188083 92.471527 1.966008029 -0.186806 72 4 SH19979 19979 YBL087C spliced 31.802365 176.809861 104.306113 2.018309762 -0.023905 72 5 SH12645 12645 MT_15S MT_15S 27.803646 165.459862 27.803646 138.656216 83.229931 1.920279535 -0.085256 72 6 SH405 405 Asn1 3' flank 27.846725 179.287793 103.567259 2.015222482 -0.286523 72 7 SH14692 14692 MT 21S rRNA 3' 27.90316 180.571324 27.90316 153.668164 90.785662 1.958017265 -0.157843 72 8 SH7956 7956 snoRNA cluster 2 5' 27.97222 170.640899 27.97222 143.668679 85.8204495 1.933590785 -0.100201 72 9 SH15399 15399 YBL050W_2_125087_126081_INTRON_31_146 intron 35.149303 224.981832 35.149303 190.832529 112.990916 2.053043529 -0.027087 72 10 SH9635 9635 RUF4 5' 30.172898 172.273782 101.22334 2.005280663 -0.095822 72 11 SH7330 7330 snR66 3' 30.273977 156.298694 93.2863355 1.969818033 -0.00192 72 12 SH604 604 Gln1 61-72 + 3' flank 61 3' flank 85.979894 265.299535 175.6397145 2.244622722 -0.043555 72 13 SH12498 12498 MT_tRNA Pro tRNA 30.48236 170.481507 30.48236 140.999147 85.7407535 1.933187296 0.095405 72 14 SH3488 3488 Tyr1 5' flank 26.465715 128.663584 77.5646495 1.889663834 -0.125607 72 15 SH15984 15984 YDL136W_4_217600_218367_INTRON_4_408 intron 28.612428 163.190777 28.612428 135.578349 82.0953885 1.914318762 -0.007373 72 16 SH15009 15009 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 31.802885 194.848513 31.802885 164.045628 97.9242565 1.990890283 0.052255 72 17 SH16810 16810 YGL137W_7_249872_252741_INTRON_19_218 3' exon 30.846093 201.461672 30.846093 171.615579 101.230836 2.005312823 -0.050683 72 18 SH11782 11782 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5796 5811 17354.43589 14416.20048 15885.31818 4.200995918 0.007902 72 19 SH12870 12870 MT COX1 COX1ai1 30.989053 200.887295 30.989053 170.898242 100.9436475 2.004078993 -0.037783 72 20 SH288 288 Arg4 36-50 36 50 461.083413 754.214584 607.6489985 2.783652786 0.003934 72 21 SH9127 9127 snR7 U5 RNA 5' 37.433872 189.131308 113.28259 2.05416317 0.036967 72 22 SH486 486 Asp2 5' flank - tRNA7 5' flank 7 39.639037 148.215732 93.9273845 1.972792229 0.551622 72 23 SH494 494 Asp2 tRNA 31 43 39.749378 162.45757 101.103474 2.004766079 0.400132 72 24 SH16683 16683 YGL030W_7_439087_439634_INTRON_4_233 intron 29.275908 215.113736 29.275908 186.837828 108.056868 2.033652375 -0.234693 72 25 SH17739 17739 YKL156W_11_158616_159214_INTRON_4_353 intron 29.360356 180.37262 29.360356 152.012264 90.68631 1.957541731 -0.042987 72 26 SH14665 14665 MT 21S rRNA 21S rRNA4 35.823461 199.022076 35.823461 164.198615 100.011038 2.000047935 0.257569 72 27 SH5231 5231 snR30 snR30 6 22 31.638882 147.302481 89.4706815 1.951680745 0.13762 72 28 SH6079 6079 snR37 snR37 311 328 29.560982 156.62899 93.094986 1.968926291 -0.053091 72 29 SH21031 21031 YMR116C spliced 31.734294 176.461731 104.0980125 2.017442438 -0.025908 72 30 SH20201 20201 YDR025W spliced 38.176152 187.100203 112.6381775 2.051685615 0.074373 72 31 SH5071 5071 snR11 5' 29.60998 137.476079 83.5430295 1.92191022 0.053971 72 32 SH7036 7036 snR62 5' 32.793843 166.131607 99.462725 1.997660354 0.096777 72 33 SH15798 15798 YDL061C_4_341182_340627_INTRON_1_408 intron 538.984081 1429.530345 538.984081 891.546264 715.2651725 2.854467079 -0.073914 72 34 SH6713 6713 snR49 snR49 91 109 50.873477 217.845644 134.3595605 2.128268575 -0.080766 72 35 SH15229 15229 MT COX3 cox3 29.468126 156.564302 29.468126 128.096176 78.782151 1.896427834 0.09906 72 36 SH9695 9695 RUF4 RUF4 251 271 29.438228 169.859536 99.648882 1.998472431 -0.127563 72 37 SH9859 9859 RUF5-1 RUF5-1 101 122 31.553316 180.153354 105.853335 2.024704545 -0.057635 72 38 SH12185 12185 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7811 7828 44.354176 208.265484 126.30983 2.101437151 -0.07208 72 39 SH5099 5099 snR11 snR11 96 117 29.483725 152.549114 91.0164195 1.959119747 -0.037141 72 40 SH16238 16238 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 33.811052 206.929497 33.811052 174.118445 103.9647485 2.016886107 0.089325 72 41 SH13391 13391 MT COX1 intronic 29.611363 201.571932 29.611363 172.960569 101.285966 2.005549274 -0.134982 72 42 SH9561 9561 RUF3 RUF3 191 207 31.821826 156.987654 94.40474 1.9749938 0.098 72 43 SH21088 21088 YNL012W spliced 255.181702 479.591136 367.386419 2.565123098 0.037703 72 44 SH11433 11433 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4051 4067 415.15943 822.395442 618.777436 2.791534469 -0.268641 72 45 SH724 724 Gln3 3' flank 31.932095 176.507175 104.219635 2.017949548 -0.014554 72 46 SH7789 7789 snoRNA cluster1 snR75 51.332081 240.783501 51.332081 190.45142 120.8917505 2.082396666 0.221949 72 47 SH6476 6476 snR45 3' 31.890749 164.938077 98.414413 1.993058706 0.051901 72 48 SH16774 16774 YGL103W_7_310965_311925_INTRON_50_560 intron 31.846548 186.293954 31.846548 155.447406 93.646977 1.971493763 0.107598 72 49 SH3471 3471 Trp1 3' flank 31.795189 149.641058 90.7181235 1.957694058 0.135087 72 50 SH21610 21610 copy of SH7091 30.673467 152.021504 91.3474855 1.960696597 0.047763 72 51 SH1566 1566 Leu4 tRNA 1 13 470.375434 841.036499 655.7059665 2.816709135 -0.149401 72 52 SH17200 17200 YHR021C_8_148660_147862_INTRON_4_553 intron/exon 29.518133 160.655898 29.518133 132.137765 80.827949 1.907561559 0.078292 72 53 SH5565 5565 snR33 snR33 111 127 29.485288 162.653133 96.0692105 1.982584222 -0.088985 72 54 SH4025 4025 SRP RNA SRP RNA 16 31 31.587422 187.008499 109.2979605 2.038612058 -0.112684 72 55 SH5257 5257 snR30 snR30 136 148 29.442294 176.986887 103.2145905 2.013741094 -0.169067 72 56 SH10912 10912 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1446 1459 52.866088 209.59491 131.230499 2.11803478 0.030508 72 57 SH17885 17885 YLR048W_12_242233_243350_INTRON_91_449 intron 42.166001 253.06513 42.166001 211.899129 127.032565 2.103915067 -0.143146 72 58 SH3657 3657 Val2 tRNA 26 41 72.00557 214.342616 143.174093 2.155864441 0.22428 72 59 SH14993 14993 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.319695 157.478803 29.319695 129.159108 79.2394015 1.898941187 0.081854 72 60 SH12349 12349 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.469968 183.178698 33.469968 150.70873 92.089349 1.964209403 0.233918 72 61 SH11223 11223 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3001 3023 31.256111 186.447523 108.851817 2.036835683 -0.120245 72 62 SH21050 21050 YMR143W spliced 35.348702 176.538815 105.9437585 2.025075376 0.119307 72 63 SH1741 1741 Leu7 tRNA 1 13 67878.41694 31904.83112 49891.62403 4.698027641 0.515462 72 64 SH3952 3952 RNase MRP RNaseMRP 176 192 39.330516 159.445543 99.3880295 1.99733408 0.419021 72 65 SH11346 11346 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3616 3633 33.012108 149.875255 91.4436815 1.961153702 0.211768 72 66 SH5170 5170 snR13 snR13 6 27 28.835802 129.014578 78.92519 1.897215636 0.048528 72 67 SH21465 21465 copy of SH1001 47.661045 187.96205 117.8115475 2.071187861 0.204397 72 68 SH12837 12837 MT COX1 COX1ai1 30.97463 219.284234 30.97463 189.309604 110.142117 2.04195342 -0.156789 72 69 SH15300 15300 MT 9S rRNA 3' 31.01293 184.063604 31.01293 154.050674 92.531802 1.96629102 0.059863 72 70 SH16202 16202 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 33.135905 219.427775 33.135905 187.29187 110.2138875 2.042236321 -0.057907 72 71 SH13221 13221 MT COX1 COX1-ai4 28.968034 175.515542 28.968034 147.547508 88.257771 1.945752955 -0.047288 72 72 SH1853 1853 Leu9 tRNA 6 18 5369.417616 6656.194878 6012.806247 3.77907721 -0.28072 72 73 SH10 10 Ala1 5' flank 28.973132 171.676593 100.3248625 2.001408573 -0.169088 72 74 SH5240 5240 snR30 snR30 51 65 52.069563 214.589688 133.3296255 2.124926659 -0.031691 72 75 SH18356 18356 YMR033W_13_337787_339276_INTRON_31_116 exon/intron 28.99038 185.428677 28.99038 157.438297 93.2143385 1.969482722 -0.097717 72 76 SH20725 20725 YJL177W spliced 35.312317 212.436361 123.874339 2.09298135 -0.257386 72 77 SH16688 16688 YGL030W_7_439087_439634_INTRON_4_233 intron 31.162999 185.800853 31.162999 155.637854 93.4004265 1.970348859 0.061578 72 78 SH12998 12998 MT COX1 COX1ai2 33.324406 232.135258 33.324406 199.810852 116.567629 2.066577963 -0.164936 72 79 SH11298 11298 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3376 3394 29.17106 136.12413 82.647595 1.91723022 0.03022 72 80 SH21458 21458 copy of SH634 29.217607 177.34578 103.2816935 2.01402335 -0.185446 72 81 SH11702 11702 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5396 5411 13545.09948 14514.19318 14029.64633 4.147046723 -0.323767 72 82 SH17485 17485 YJL024C_10_396288_395627_INTRON_23_99 intron 31.38898 167.804464 31.38898 137.415484 84.402232 1.926353932 0.177195 72 83 SH4925 4925 snR9 snR9 31 47 33.523252 168.466124 100.994688 2.004298532 0.123723 72 84 SH20367 20367 YER133W spliced 31.426374 183.621487 107.5239305 2.031505131 -0.087964 72 85 SH9797 9797 RUF4 RUF4 761 778 29.335891 177.228733 103.282312 2.014025951 -0.177222 72 86 SH13844 13844 MT COB Cytbi2 29.370676 172.843924 29.370676 144.473248 86.921962 1.939129521 -0.001807 72 87 SH8372 8372 snoRNA cluster 5 5' 29.4117 160.505915 29.4117 132.094215 80.7529575 1.907158437 0.070941 72 88 SH19303 19303 YPL198W_16_173151_174701_INTRON_12_420 intron 31.577145 207.576974 31.577145 176.999829 104.288487 2.018236367 -0.038281 72 89 SH21799 21799 copy of SH15069 31.606873 199.23259 115.4197315 2.06228006 -0.218794 72 90 SH11819 11819 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5981 5998 40.140164 154.787944 97.464054 1.988844472 0.493458 72 91 SH18635 18635 YNL096C_14_444312_443395_INTRON_145_489 intron 31.585236 170.752155 31.585236 140.166919 85.8760775 1.933872199 0.174322 72 92 SH10059 10059 RUF6 RUF6 141 163 29.397242 143.251678 86.32446 1.93613387 0.006714 72 93 SH18558 18558 YMR292W_13_854795_855293_INTRON_23_104 exon/intron 31.415514 209.457608 31.415514 179.042094 105.228804 2.022134634 -0.05953 72 94 SH1721 1721 Leu7 5' flank 33.384202 203.630193 118.5071975 2.073744728 -0.204905 72 95 SH3841 3841 RNaseP RNaseP 171 185 56.350973 212.944579 134.647776 2.129199184 0.042654 72 96 SH12930 12930 MT COX1 COX1ai2 30.922185 179.836032 30.922185 149.913847 90.418016 1.956254973 0.075833 72 97 SH4837 4837 snR8 5' 30.725914 143.571666 87.14879 1.940261362 0.097636 72 98 SH21317 21317 YPL249C-A spliced 34.648848 180.616599 107.6327235 2.03194433 0.056817 72 99 SH4447 4447 telomerase RNA telomerase 1271 1283 4402.075762 5002.265655 4702.170709 3.672298392 -0.084039 72 100 SH7529 7529 snR79 5' - 6 -14 6 30.157367 132.492914 81.3251405 1.910224822 0.121322 72 101 SH9412 9412 RUF2 5' 32.017141 184.889033 108.453087 2.035241918 -0.077263 72 102 SH19720 19720 Negative Control 29.835156 168.653541 99.2443485 1.996705785 -0.095287 72 103 SH16146 16146 YDR092W_4_629869_630598_INTRON_31_298 intron 31.705663 193.729985 31.705663 163.024322 97.3649925 1.988402835 0.052877 72 104 SH8840 8840 LSR1 / U2 RNA U2 841 856 2583.595725 2782.502513 2683.049119 3.428628623 0.148417 73 2 SH14949 14949 MT tRNA Met tRNA 27.636637 153.010752 27.636637 126.374115 77.005376 1.886521046 -0.021691 73 3 SH15748 15748 YCR031C_3_178212_177492_INTRON_8_314 exon/intron 29.662563 173.582328 29.662563 144.919765 87.291164 1.940970285 0.016615 73 4 SH20645 20645 YHR203C spliced 37.732013 184.379051 111.055532 2.045540197 0.098002 73 5 SH20977 20977 YML056C spliced 49.875186 159.870647 104.8729165 2.020663346 0.600562 73 6 SH8326 8326 snoRNA cluster4 intergenic 31.794555 197.906894 31.794555 167.112339 99.453447 1.99761984 0.032948 73 7 SH20071 20071 YCR028C-A spliced 27.845656 163.418857 95.6322565 1.980604403 -0.211527 73 8 SH11938 11938 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6576 6589 84.802964 255.799083 170.3010235 2.231217258 0.015113 73 9 SH10528 10528 RUF8 RUF8 566 583 32.076846 142.110519 87.0936825 1.939986654 0.195219 73 10 SH13939 13939 MT COB Cytbi3 30.16564 204.318063 30.16564 175.152423 102.6590315 2.011397163 -0.113108 73 11 SH14541 14541 MT 21S rRNA 21S rRNA3 28.247404 200.390327 28.247404 173.142923 100.6951635 2.003008611 -0.228623 73 12 SH12661 12661 MT_15S MT_15S 32.460123 206.633084 32.460123 175.172961 103.816542 2.016266559 0.023815 73 13 SH19525 19525 CBP1 1.2 28.478111 169.269104 98.8736075 1.99508038 -0.193412 73 14 SH2356 2356 Phe3 3' flank 28.588971 122.731386 75.6601785 1.878867362 0.072225 73 15 SH974 974 Gly1 3' flank 36.989102 201.387992 119.188547 2.076234525 -0.108244 73 16 SH7966 7966 snoRNA cluster 2 5' 26.712919 158.762944 26.712919 133.050025 79.881472 1.902446059 -0.134269 73 17 SH4930 4930 snR9 snR9 56 71 33.052194 176.46926 104.760727 2.020198504 0.039502 73 18 SH5366 5366 snR30 3' 31.054454 159.837115 95.4457845 1.979756752 0.032769 73 19 SH4176 4176 telomerase RNA 5' 29.042306 172.105267 100.5737865 2.002484801 -0.16622 73 20 SH12887 12887 MT COX1 COX1ai1 31.224731 212.889985 31.224731 182.665254 106.9449925 2.029160454 -0.091273 73 21 SH11067 11067 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2221 2240 260.075055 436.258736 348.1668955 2.541787475 0.221815 73 22 SH19098 19098 YOR312C_15_901173_900242_INTRON_2_427 intron 44.12378 239.103664 44.12378 195.979884 120.051832 2.079368792 0.061646 73 23 SH5481 5481 snR32 snR32 66 82 54.917594 199.645568 127.281581 2.104765561 0.163573 73 24 SH8260 8260 snoRNA cluster4 5'/snR67 29.455979 179.677741 29.455979 151.221762 90.3388705 1.955874656 -0.032016 73 25 SH5491 5491 snR32 snR32 116 131 103.512206 293.962145 198.7371755 2.298279113 -0.062068 73 26 SH20795 20795 YKL156W spliced 29.603279 159.641497 94.622388 1.975993904 -0.065557 73 27 SH15993 15993 YDL136W_4_217600_218367_INTRON_4_408 intron/exon 29.658084 164.230074 29.658084 135.57199 82.615037 1.917059102 0.068259 73 28 SH17636 17636 YJR094W-A_10_608000_608553_INTRON_3_277 intron/exon 40.435689 242.314598 40.435689 202.878909 121.657299 2.08513817 -0.069801 73 29 SH4722 4722 snR4 snR4 146 161 29.719247 134.523495 82.121371 1.914456191 0.078648 73 30 SH15010 15010 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 31.871403 188.587608 31.871403 157.716205 94.793804 1.976779952 0.096256 73 31 SH12019 12019 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6981 6999 102.006049 293.235265 197.620657 2.295832339 -0.071807 73 32 SH9906 9906 RUF5-1 RUF5-1 336 355 29.689891 149.148202 89.4190465 1.951430035 -0.004416 73 33 SH20909 20909 YLR333C spliced 35.009305 183.790479 109.399892 2.039016893 0.03982 73 34 SH2331 2331 Phe3 5' flank - tRNA2 2 29.612125 176.995298 103.3037115 2.014115925 -0.158363 73 35 SH21235 21235 YOR293W spliced 35.981007 183.36996 109.6754835 2.040109558 0.076336 73 36 SH3417 3417 Trp1 5' flank 31.673425 184.631743 108.152584 2.0340369 -0.087843 73 37 SH19442 19442 YPR187W_16_911252_911795_INTRON_21_96 intron 29.526108 166.647947 29.526108 138.121839 83.8239735 1.923368244 0.044345 73 38 SH6612 6612 snR47 3' 29.531969 120.970372 75.2511705 1.87651326 0.150945 73 39 SH2218 2218 Phe1 5' flank 35.965095 185.227702 110.5963985 2.043740985 0.054069 73 40 SH21863 21863 copy of SH18013 29.599229 146.585531 88.09238 1.944938344 0.003207 73 41 SH2743 2743 Pro5 96-103 + 3' flank 96 31.78914 154.159053 92.9740965 1.968361967 0.110596 73 42 SH11788 11788 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5826 5839 15395.36928 12831.28953 14113.3294 4.149629478 0.038047 73 43 SH7670 7670 snoRNA cluster1 snR78 31.879029 181.98892 31.879029 151.109891 91.49446 1.961394798 0.13264 73 44 SH8872 8872 LSR1 / U2 RNA U2 1001 1017 1230.912999 1718.689423 1474.801211 3.168733486 -0.071843 73 45 SH7094 7094 snR63 5' 34.048947 199.925301 116.987124 2.068138064 -0.150965 73 46 SH8857 8857 LSR1 / U2 RNA U2 926 941 182.851453 460.900191 321.875822 2.507688355 -0.279128 73 47 SH2432 2432 Phe5 5' flank 29.690645 163.018455 96.35455 1.983872227 -0.076399 73 48 SH15365 15365 YBL027W_2_168385_169338_INTRON_3_386 intron 29.640497 202.200905 29.640497 173.560408 101.6004525 2.006895642 -0.136662 73 49 SH5941 5941 snR36 snR36 161 178 31.720578 163.114816 97.417697 1.988637858 0.053193 73 50 SH17851 17851 YKR095W-A_11_625432_625839_INTRON_39_113 5' exon 35.928352 234.441399 35.928352 199.513047 117.7206995 2.070852834 -0.108458 73 51 SH2404 2404 Phe4 tRNA 71 87 77.618118 243.46761 160.542864 2.205591006 0.032127 73 52 SH16268 16268 YDR447C_4_1355542_1354818_INTRON_4_317 exon/intron 29.432728 216.818703 29.432728 188.385975 108.9093515 2.037065172 -0.23309 73 53 SH1927 1927 Lys1 3' flank 29.398998 173.257852 101.328425 2.005731292 -0.150182 73 54 SH12196 12196 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7866 7886 29.375451 149.730043 89.552747 1.952078912 -0.029666 73 55 SH2292 2292 Phe2 tRNA-intron/exon 56 70 687.747208 958.937505 823.3423565 2.915580458 0.11448 73 56 SH11260 11260 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3186 3201 67.662397 222.436748 145.0495725 2.161516453 0.096147 73 57 SH1908 1908 Lys1 5' flank - tRNA12 12 50.567557 170.123107 110.345332 2.042753966 0.466792 73 58 SH15895 15895 YDL082W_4_308423_309387_INTRON_5_369 3' exon 31.417903 218.798669 31.417903 188.380766 109.8993345 2.040995063 -0.131467 73 59 SH1008 1008 Gly2 tRNA 31 45 198.784822 435.578228 317.181525 2.501307883 -0.085472 73 60 SH10247 10247 RUF6 3' 31.288062 182.371708 106.829885 2.028692761 -0.085851 73 61 SH2355 2355 Phe3 3' flank 29.08864 125.957956 77.523298 1.88943224 0.086354 73 62 SH3387 3387 Thr4 tRNA 21 35 28.986446 160.573316 94.779881 1.976716159 -0.113971 73 63 SH8873 8873 LSR1 / U2 RNA U2 1006 1022 156.034869 303.705765 229.870317 2.361482895 0.29514 73 64 SH13467 13467 MT COX1 intronic 28.805354 163.285231 28.805354 135.479877 82.1426155 1.914568527 0.007347 73 65 SH21695 21695 copy of SH10660 34.982922 201.30809 118.145506 2.072417207 -0.146832 73 66 SH1206 1206 Ile1 5' flank - tRNA7 7 32.869646 178.187606 105.528626 2.023370284 0.016516 73 67 SH10011 10011 RUF6 5' 29.748984 138.168702 83.958843 1.924066445 0.059918 73 68 SH8299 8299 snoRNA cluster4 intergenic 32.868977 149.969441 32.868977 118.100464 75.4847205 1.877859051 0.392271 73 69 SH3801 3801 RNaseP 5' flank 209.655929 374.790923 292.223426 2.465715028 0.238391 73 70 SH11891 11891 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6341 6358 199.425943 431.323347 315.374645 2.498826775 -0.064615 73 71 SH12558 12558 MT_15S MT_15S 51.639488 248.224675 51.639488 197.585187 124.6123375 2.095561043 0.144059 73 72 SH2403 2403 Phe4 tRNA 66 80 34.965824 161.025756 97.99579 1.991207418 0.248377 73 73 SH37 37 Ala1 3' flank 28.735601 134.870074 81.8028375 1.912768368 0.005756 73 74 SH18795 18795 YNL301C_14_64561_63569_INTRON_113_544 intron 28.74681 162.372121 28.74681 134.625311 81.6860605 1.912147952 0.007993 73 75 SH2200 2200 Met2 3' flank 32.933107 161.943191 97.438149 1.988729025 0.130643 73 76 SH19864 19864 Negative Control 37.158283 187.154767 112.156525 2.049824545 0.054619 73 77 SH3879 3879 RNaseP 361-369 + 3' 361 46.664441 183.44431 115.0543755 2.060903139 0.246301 73 78 SH3021 3021 Ser2 tRNA 66 80 37.339701 186.030116 111.6849085 2.047994493 0.071192 73 79 SH17529 17529 YJL136C_10_156971_156248_INTRON_25_484 3' exon 31.138697 221.53681 31.138697 191.398113 111.268405 2.046371863 -0.168975 73 80 SH7198 7198 snR64 snR64 56 75 29.111566 128.368433 78.7399995 1.896195408 0.072264 73 81 SH12129 12129 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7531 7549 29.169003 171.233586 100.2012945 2.000873332 -0.153012 73 82 SH20321 20321 YER056C-A spliced 151.498133 314.125615 232.811874 2.367005127 0.202254 73 83 SH17655 17655 YKL002W_11_437416_438182_INTRON_61_128 5' exon 37.703699 182.438243 37.703699 145.734544 91.7191215 1.962459886 0.490679 73 84 SH10131 10131 RUF6 RUF6 501 517 31.394277 165.229936 98.3121065 1.992607002 0.020773 73 85 SH7958 7958 snoRNA cluster 2 5' 29.314134 174.097512 29.314134 145.783378 87.548756 1.942249979 -0.012901 73 86 SH15682 15682 YBR191W_2_606228_607098_INTRON_12_399 intron 29.351366 177.907995 29.351366 149.556629 89.4539975 1.951599753 -0.03043 73 87 SH18658 18658 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.389513 196.697188 29.389513 168.307675 98.848594 1.994970496 -0.123421 73 88 SH13190 13190 MT COX1 Exon4 29.422444 205.340259 29.422444 176.917815 103.1701295 2.013553976 -0.169931 73 89 SH9747 9747 RUF4 RUF4 511 527 29.442227 172.409019 100.925623 2.004001439 -0.142446 73 90 SH17398 17398 YIL069C_9_232366_231550_INTRON_4_412 intron 33.693693 218.240061 33.693693 185.546368 109.6200305 2.039889919 -0.02211 73 91 SH14764 14764 MT ORF11; tRNA Leu; tRNA Gln ORF11 29.413472 173.284347 29.413472 144.870875 87.1421735 1.940228388 -0.000883 73 92 SH6784 6784 snR50 3' 29.35608 134.756936 82.056508 1.914113031 0.051402 73 93 SH3198 3198 Ser5 3' flank 29.268803 167.383061 98.325932 1.992668072 -0.1275 73 94 SH6277 6277 snR42 snR42 166 185 29.153938 150.655836 89.904887 1.9537833 -0.050368 73 95 SH1357 1357 Ile3 3' flank 29.015734 168.3359 98.675817 1.994210731 -0.15012 73 96 SH2348 2348 Phe3 tRNA 66 80 37.207557 168.999913 103.103735 2.013274398 0.254346 73 97 SH20142 20142 YDL108W spliced 1552.046212 2140.616022 1846.331117 3.266309589 -0.113624 73 98 SH2476 2476 Phe5 3' flank 30.581839 166.681072 98.6314555 1.994015442 -0.037125 73 99 SH116 116 Arg1 5' flank 42.729662 172.934632 107.832147 2.032748252 0.325562 73 100 SH17934 17934 YLR093C_12_327416_326514_INTRON_17_157 intron 42.49158 240.854188 42.49158 199.362608 120.927094 2.082523616 -0.000083 73 101 SH1553 1553 Leu4 5' flank 30.056899 163.926533 96.991716 1.986734643 -0.055455 73 102 SH18924 18924 YOL121C_15_92849_92025_INTRON_21_410 intron 29.901482 210.243904 29.901482 181.342422 105.621952 2.023754189 -0.164837 73 103 SH16318 16318 YDR471W_4_1401759_1402553_INTRON_32_415 intron 29.756696 209.925911 29.756696 181.169215 105.4629555 2.023099938 -0.17294 73 104 SH12755 12755 MT COX1 COX1ai1 31.635886 192.552152 31.635886 161.916266 96.776076 1.985768009 0.055688 74 2 SH8886 8886 LSR1 / U2 RNA U2 1071 1090 31.541185 150.233529 90.887357 1.958503474 0.115241 74 3 SH19469 19469 ADH1 39.604491 180.686493 110.145492 2.041966727 0.176328 74 4 SH4049 4049 SRP RNA SRP RNA 136 153 31.612074 166.764561 99.1883175 1.996460524 0.024304 74 5 SH7704 7704 snoRNA cluster1 intergenic/snR77 27.666931 178.39067 27.666931 151.723739 89.695335 1.952769856 -0.165825 74 6 SH7902 7902 snoRNA cluster1 intergenic 27.741275 164.849547 27.741275 138.108272 82.9247735 1.918684294 -0.0869 74 7 SH26 26 Ala1 tRNA 26 40 33.869155 170.552818 102.2109865 2.00949758 0.126297 74 8 SH11738 11738 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5576 5597 36.015164 190.789627 113.4023955 2.054622229 -0.009381 74 9 SH1159 1159 His1 tRNA 16 32 51.419941 209.290961 130.355451 2.115129197 0.014629 74 10 SH2250 2250 Phe1 3' flank 28.176784 162.896416 95.5366 1.980169781 -0.1844 74 11 SH16243 16243 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 28.306868 174.240577 28.306868 146.933709 87.6202885 1.942604679 -0.092666 74 12 SH8777 8777 LSR1 / U2 RNA U2 526 542 30.491031 138.678758 84.5848945 1.927292812 0.108936 74 13 SH15715 15715 YBR220C_2_663261_662457_INTRON_302_722 intron/exon 28.566656 166.581732 28.566656 139.015076 83.790866 1.923196679 -0.030253 74 14 SH3985 3985 RNase MRP 3' 28.689819 135.965099 82.327459 1.915544711 -0.003904 74 15 SH12523 12523 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.80546 181.103835 28.80546 153.298375 91.0519175 1.959289096 -0.08941 74 16 SH11815 11815 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5961 5976 939.031541 1657.00405 1298.017796 3.113280647 -0.365853 74 17 SH1373 1373 Leu1 5' flank 31.106615 164.374935 97.740775 1.990075778 0.008836 74 18 SH17629 17629 YJR094W-A_10_608000_608553_INTRON_3_277 intron 33.309031 229.102228 33.309031 196.793197 115.051114 2.060890828 -0.135169 74 19 SH20360 20360 YER131W spliced 46.095575 203.769496 124.9325355 2.096675554 0.001495 74 20 SH7266 7266 snR65 3' 29.277774 149.435629 89.3567015 1.951127129 -0.034984 74 21 SH8565 8565 snR19 / U1 RNA U1 321 338 37.855379 170.399881 104.12763 2.017565984 0.261103 74 22 SH17163 17163 YHR016C_8_138446_136872_INTRON_48_215 intron 31.575128 215.09109 31.575128 184.515962 108.045545 2.033606864 -0.090508 74 23 SH12517 12517 MT_ORF6 + ORF7 (hypothetical) ORF6/7 31.663758 184.110219 31.663758 153.446461 92.5551095 1.966400399 0.106148 74 24 SH13750 13750 MT COB Exon1 29.607512 196.568044 29.607512 167.960532 98.784022 1.994686705 -0.106411 74 25 SH21386 21386 Phe1_5 spliced 31.818014 184.401272 108.109643 2.033864433 -0.080279 74 26 SH20846 20846 YLR048W spliced 31.875655 190.797201 111.336428 2.046637284 -0.135647 74 27 SH12689 12689 MT ORF 8 (hypothetical) 5' 29.76724 192.039464 29.76724 163.272224 96.519732 1.984616107 -0.072312 74 28 SH3239 3239 Thr1 tRNA 51 67 38.406304 190.416473 114.4113885 2.058469256 0.040361 74 29 SH11302 11302 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3396 3414 39.497566 202.447951 120.9727585 2.082687584 -0.079029 74 30 SH2178 2178 Met2 tRNA 21 33 34.104795 181.475724 107.7902595 2.032579517 0.029851 74 31 SH19238 19238 YPL090C_16_378390_377286_INTRON_7_400 intron 29.786701 193.404716 29.786701 164.618015 97.202358 1.9876768 -0.077605 74 32 SH3981 3981 RNase MRP RNaseMRP 321 336 31.912849 163.982506 97.9476775 1.990994143 0.059099 74 33 SH16089 16089 YDR025W_4_491510_492319_INTRON_46_384 intron 29.73284 178.057273 29.73284 149.324433 89.5286365 1.95196197 -0.002373 74 34 SH127 127 Arg1 11-23 11 23 33.986387 176.940339 105.463363 2.023101616 0.068393 74 35 SH3014 3014 Ser2 tRNA 31 48 31.802475 169.27469 100.5385825 2.002332758 0.020351 74 36 SH4866 4866 snR8 snR8 111 123 33.911306 164.87834 99.394823 1.997363765 0.16711 74 37 SH11481 11481 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4291 4304 411.932133 582.409211 497.170672 2.696505502 0.290506 74 38 SH3187 3187 Ser5 tRNA 56 70 241.412965 451.316927 346.364946 2.539533933 0.076478 74 39 SH18472 18472 YMR143W_13_551927_552902_INTRON_25_568 intron 29.620604 198.6375 29.620604 170.016896 99.81875 1.999212127 -0.116959 74 40 SH18449 18449 YMR142C_13_551206_550205_INTRON_5_406 3' exon 33.925272 218.550694 33.925272 185.625422 109.775347 2.040504819 -0.014623 74 41 SH13856 13856 MT COB Cytbi2 31.813333 193.393379 31.813333 162.580046 97.1966895 1.987651473 0.061987 74 42 SH21627 21627 copy of SH7732 38.283627 211.48355 124.8835885 2.09650537 -0.197548 74 43 SH14044 14044 MT COB Cytbi4 31.860194 189.916377 31.860194 159.056183 95.4581885 1.979813189 0.087003 74 44 SH9209 9209 snR6 / U6 RNA 5' 39.38664 184.229228 111.807934 2.048472623 0.130136 74 45 SH9370 9370 RUF1 RUF1 426 443 29.703813 144.906523 87.305168 1.941039952 0.019613 74 46 SH13723 13723 MT COB 5' 30.743692 189.930264 30.743692 160.186572 95.465132 1.979844777 0.010128 74 47 SH16059 16059 YDL219W_4_65243_65766_INTRON_66_136 intron 29.626246 174.163753 29.626246 145.537507 87.5818765 1.942414246 0.01072 74 48 SH2450 2450 Phe5 tRNA 21 33 35.979654 187.128945 111.5542995 2.047486313 0.032115 74 49 SH19731 19731 Negative Control 33.771726 182.103867 107.9377965 2.033173548 0.012263 74 50 SH14871 14871 MT tRNA Ser2; tRNA Arg2 3' 31.57607 202.342821 31.57607 171.766751 101.6714105 2.007198849 -0.007853 74 51 SH21134 21134 YNL147W spliced 50.678873 200.377265 125.528069 2.098740848 0.100308 74 52 SH3592 3592 Val1 5' flank 31.475339 143.58841 87.5318745 1.942166229 0.147552 74 53 SH9445 9445 RUF2 RUF2 66 78 42.050866 192.534524 117.292695 2.069270965 0.0733 74 54 SH10904 10904 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1406 1426 5506.317996 3892.056833 4699.187415 3.672022766 0.604869 74 55 SH4950 4950 snR9 snR9 156 172 35.65307 177.923458 106.788264 2.028523526 0.116394 74 56 SH17344 17344 YIL018W_9_316766_317930_INTRON_5_404 intron 31.412552 219.839655 31.412552 189.427103 110.4198275 2.043047064 -0.141018 74 57 SH16334 16334 YDR471W_4_1401759_1402553_INTRON_32_415 3' exon 31.402109 182.07891 31.402109 151.676801 91.539455 1.961608322 0.098324 74 58 SH16020 16020 YDL189W_4_122079_123590_INTRON_1_99 intron 31.376562 212.519706 31.376562 182.143144 106.759853 2.028407967 -0.079296 74 59 SH13316 13316 MT COX1 COX1-ai5a 29.217879 192.558021 29.217879 164.340142 96.7790105 1.985781177 -0.116251 74 60 SH6891 6891 snR56 86-88 + 3' 86 29.147266 152.597163 90.8722145 1.958431112 -0.061215 74 61 SH2389 2389 Phe4 5- flank - tRNA12 12 45.878763 173.449827 109.664295 2.040065251 0.364137 74 62 SH905 905 Glu3 tRNA 36 48 940.183743 1268.591345 1104.387544 3.0431215 0.061806 74 63 SH5838 5838 snR35 snR35 376 390 56.01451 222.317982 139.166246 2.143533912 -0.053496 74 64 SH4478 4478 U3b (snR17b) 5' 28.741061 129.691776 79.2164185 1.898815203 0.037421 74 65 SH15937 15937 YDL115C_4_255042_253994_INTRON_1_88 intron 30.733147 199.370342 30.733147 169.637195 100.185171 2.000803444 -0.04576 74 66 SH20245 20245 YDR367W spliced 30.673116 173.616634 102.144875 2.009216581 -0.072973 74 67 SH6507 6507 snR46 snR46 26 43 30.633999 161.778726 96.2063625 1.983203795 -0.005302 74 68 SH17942 17942 YLR128W_12_398531_399434_INTRON_4_97 5' exon 30.609185 210.468961 30.609185 180.859776 105.7344805 2.024216636 -0.1184 74 69 SH19686 19686 Negative Control 30.591688 156.733997 93.6628425 1.971567334 0.017493 74 70 SH12324 12324 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.487885 148.673625 27.487885 122.18574 74.8368125 1.874115281 -0.004858 74 71 SH18371 18371 YMR079W_13_424988_426058_INTRON_10_165 intron 28.505617 186.782515 28.505617 159.276898 93.8912575 1.972625156 -0.142118 74 72 SH1572 1572 Leu4 tRNA-exon/intron 31 50 28.499441 173.58683 101.0431355 2.004506814 -0.212262 74 73 SH9708 9708 RUF4 RUF4 316 332 30.563315 172.928399 101.745857 2.007516734 -0.075642 74 74 SH20625 20625 YHR101C spliced 30.587269 180.914456 105.7508625 2.024283918 -0.120046 74 75 SH15900 15900 YDL083C_4_307788_306925_INTRON_25_456 intron 36.833965 187.6098 36.833965 151.775835 94.3049 1.974534259 0.405784 74 76 SH20801 20801 YKL157W spliced 30.705812 186.676804 108.691308 2.036194815 -0.144672 74 77 SH16942 16942 YGR027C_7_534779_534126_INTRON_1_312 intron 28.722588 168.704807 28.722588 140.982219 84.8524035 1.928664149 -0.029738 74 78 SH11036 11036 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2066 2083 50.735402 172.423644 111.579523 2.0475845 0.438256 74 79 SH17146 17146 YHR010W_8_126513_127484_INTRON_32_592 3' exon 28.915669 194.52241 28.915669 166.606741 97.761205 1.990166546 -0.148925 74 80 SH20092 20092 YDL012C spliced 33.195506 182.964202 108.079854 2.033744749 -0.016306 74 81 SH14971 14971 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.130426 190.747998 30.130426 161.617572 95.873999 1.981700843 -0.038893 74 82 SH10418 10418 RUF8 RUF8 16 33 33.351398 195.720471 114.5359345 2.058941764 -0.124423 74 83 SH17098 17098 YHL001W_8_104270_105084_INTRON_130_527 intron 46.087797 211.25307 46.087797 166.165273 106.126535 2.025823985 0.464914 74 84 SH20207 20207 YDR059C spliced 58.88584 210.25975 134.572795 2.128957273 0.103025 74 85 SH7438 7438 snR69 91-101 + 3' 91 29.266801 172.93522 101.1010105 2.004755496 -0.156713 74 86 SH12899 12899 MT COX1 intronic 37.769943 256.148433 37.769943 219.37849 128.5742165 2.109153887 -0.289412 74 87 SH1543 1543 Leu3 3' flank 37.8062 146.342338 92.074269 1.96413828 0.491526 74 88 SH18123 18123 YLR388W_12_898158_898821_INTRON_1_488 intron 33.586205 233.040542 33.586205 200.454337 117.020271 2.0682611 -0.166402 74 89 SH88 88 Ala2 3' flank 29.352114 119.973913 74.6630135 1.873105515 0.145236 74 90 SH21396 21396 Pro2_7 spliced 2737.506139 3142.443706 2939.974923 3.468343626 0.033097 74 91 SH13071 13071 MT COX1 Exon3 / cox1ai3 29.304514 191.585698 29.304514 163.281184 96.292849 1.983594036 -0.10487 74 92 SH7530 7530 snR79 5' - 10 -9 10 31.360127 151.398884 91.3795055 1.960848804 0.097034 74 93 SH6746 6746 snR50 5' 43.943722 197.24446 120.594091 2.081326028 0.044494 74 94 SH11236 11236 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3066 3082 19048.18291 21676.42416 20362.30354 4.308826907 -0.51993 74 95 SH11265 11265 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3211 3229 31.04382 145.177907 88.1108635 1.945029457 0.109985 74 96 SH11914 11914 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6456 6473 23312.43741 19775.85066 21544.14404 4.333329244 -0.112259 74 97 SH3644 3644 Val2 5' flank 30.741182 146.006249 88.3737155 1.946323114 0.085045 74 98 SH9762 9762 RUF4 RUF4 586 608 34.699733 228.490363 131.595048 2.119239547 -0.433293 74 99 SH10657 10657 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 171 188 187.69467 402.994871 295.3447705 2.470329285 -0.013459 74 100 SH7648 7648 snoRNA cluster1 5' 30.232629 173.076112 30.232629 143.843483 87.038056 1.939709182 0.062516 74 101 SH13403 13403 MT COX1 intronic 30.068845 195.212071 30.068845 166.143226 98.1060355 1.991695726 -0.065511 74 102 SH14453 14453 MT 21S rRNA 21S rRNA3 449.452011 1110.073407 449.452011 661.621396 555.5367035 2.744712757 0.18735 74 103 SH20043 20043 YBR189W spliced 39.884626 183.27186 111.578243 2.047579518 0.150372 74 104 SH15043 15043 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.633292 210.833696 29.633292 182.200404 105.916848 2.024965048 -0.186475 75 2 SH5355 5355 snR30 3' 96.295303 194.860691 145.577997 2.16309574 0.668427 75 3 SH9206 9206 snR6 / U6 RNA 5' 27.47175 166.214954 96.843352 1.986069813 -0.253326 75 4 SH15310 15310 YAL003W_1_142172_143158_INTRON_81_446 5'exon 31.540348 192.672838 31.540348 162.13249 96.836419 1.986038721 0.048678 75 5 SH10933 10933 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1551 1569 33.637965 160.32662 96.9822925 1.986692446 0.180423 75 6 SH8027 8027 snoRNA cluster 2 snR55 47.85117 232.735422 47.85117 185.884252 116.867711 2.067694538 0.231937 75 7 SH11480 11480 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4286 4301 15212.96483 11581.03455 13396.99969 4.127007547 0.185705 75 8 SH264 264 Arg4 5' flank 30.000037 135.70635 82.8531935 1.918309253 0.091631 75 9 SH8620 8620 snR19 / U1 RNA U1 596 610 33.194803 145.28411 89.2394565 1.950556917 0.248425 75 10 SH4859 4859 snR8 snR8 76 90 140.533588 339.343787 239.9386875 2.380100279 -0.018355 75 11 SH18041 18041 YLR333C_12_796335_795573_INTRON_1_423 intron 30.454616 220.984228 30.454616 191.529612 110.992114 2.045292123 -0.196744 75 12 SH10638 10638 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 76 89 63.729298 213.866451 138.7978745 2.142382816 0.128651 75 13 SH18143 18143 YLR406C_12_931752_931062_INTRON_58_406 intron 30.755454 184.534373 30.755454 154.778919 92.7671865 1.967394385 0.038741 75 14 SH456 456 Asp1 3' flank 28.815294 155.634911 92.2251025 1.964849147 -0.100956 75 15 SH10465 10465 RUF8 RUF8 251 270 28.93702 164.003275 96.4701475 1.984392943 -0.134634 75 16 SH13040 13040 MT COX1 COX1ai2 29.049295 173.589161 29.049295 145.539866 87.2945805 1.940987282 -0.030712 75 17 SH5376 5376 snR31 5' 31.257406 142.935275 87.0963405 1.939999908 0.136826 75 18 SH19500 19500 YPT1 41.940227 166.040816 103.9905215 2.016993756 0.400966 75 19 SH18819 18819 YNL302C_14_62942_61957_INTRON_21_571 intron 29.337113 210.481475 29.337113 182.144362 105.7407375 2.024242335 -0.204941 75 20 SH15384 15384 YBL027W_2_168385_169338_INTRON_3_386 3' exon 29.42214 196.216643 29.42214 167.794503 98.6083215 1.993913566 -0.118644 75 21 SH15687 15687 YBR191W_2_606228_607098_INTRON_12_399 intron 29.503817 195.878376 29.503817 167.374559 98.439188 1.993168023 -0.110861 75 22 SH18657 18657 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.5816 196.894989 29.5816 168.313389 98.9474945 1.995404802 -0.109928 75 23 SH7351 7351 snR68 5' 29.653304 129.981428 79.817366 1.902097392 0.100737 75 24 SH2984 2984 Ser1 3' flank 31.862011 186.971703 109.416857 2.039084236 -0.101983 75 25 SH15759 15759 YCR031C_3_178212_177492_INTRON_8_314 intron 31.915334 223.131545 31.915334 192.216211 112.0657725 2.049472989 -0.146661 75 26 SH21424 21424 Trp1 spliced 104.432942 273.65894 189.045941 2.276567357 0.08319 75 27 SH9649 9649 RUF4 RUF4 21 33 34.13105 159.959949 97.0454995 1.9869754 0.209953 75 28 SH1310 1310 Ile3 5' flank 29.831044 140.597577 85.2143105 1.930512534 0.05214 75 29 SH15693 15693 YBR220C_2_663261_662457_INTRON_302_722 5' exon 34.141447 213.721304 34.141447 180.579857 107.360652 2.03084514 0.039488 75 30 SH15124 15124 MT tRNA Phe 5' 29.825643 196.019559 29.825643 167.193916 98.5097795 1.993479347 -0.087472 75 31 SH13895 13895 MT COB intronic 28.739104 178.279676 28.739104 150.540572 89.639838 1.952501063 -0.079649 75 32 SH5464 5464 snR32 5' 28.724044 124.860242 76.792143 1.885316787 0.067667 75 33 SH8870 8870 LSR1 / U2 RNA U2 991 1006 29.778384 177.460548 103.619466 2.01544135 -0.150564 75 34 SH17474 17474 YJL001W_10_434855_435618_INTRON_66_181 intron 31.901153 200.448569 31.901153 169.547416 100.7242845 2.003134191 0.024507 75 35 SH3932 3932 RNase MRP RNaseMRP 76 92 34.019223 165.588234 99.8037285 1.999146766 0.168684 75 36 SH14210 14210 MT ATP9 5' 29.699868 204.790592 29.699868 176.090724 102.895296 2.012395521 -0.147626 75 37 SH1690 1690 Leu6 tRNA 16 30 84.638824 253.547266 169.093045 2.228125745 0.030639 75 38 SH19094 19094 YOR312C_15_901173_900242_INTRON_2_427 intron 29.666206 200.836486 29.666206 172.17028 100.918243 2.003969681 -0.12687 75 39 SH1906 1906 Lys1 5' flank - tRNA2 2 31.803372 174.316719 103.0600455 2.01309033 -0.009417 75 40 SH17598 17598 YJL191W_10_73786_74610_INTRON_11_418 3' exon 29.664624 166.844229 29.664624 138.179605 83.9221145 1.923876418 0.053876 75 41 SH16735 16735 YGL076C_7_365994_364333_INTRON_565_1032 intron 36.102 224.367734 36.102 189.265734 112.683867 2.051861742 0.009788 75 42 SH17111 17111 YHR001W-A_8_107819_108115_INTRON_7_69 intron/exon 31.81844 190.066473 31.81844 159.248033 95.5332365 1.980154491 0.083326 75 43 SH20166 20166 YDL136W spliced 33.961319 202.920068 118.4406935 2.073500942 -0.18517 75 44 SH2652 2652 Pro4 5' flank 31.804324 156.463059 94.1336915 1.97374509 0.099569 75 45 SH5702 5702 snR34 snR34 431 448 29.636873 169.182956 99.4099145 1.9974297 -0.110936 75 46 SH13882 13882 MT COB intronic 29.597007 184.286275 29.597007 155.689268 92.6431375 1.966813255 -0.045689 75 47 SH6189 6189 snR40 snR40 6 22 304.286184 687.76274 496.024462 2.695503095 -0.35635 75 48 SH11349 11349 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3631 3647 273.090281 384.795375 328.942828 2.517120422 0.494258 75 49 SH15776 15776 YDL012C_4_431513_431104_INTRON_46_131 intron 29.421392 168.12941 29.421392 139.708018 84.564705 1.927189138 0.027964 75 50 SH13962 13962 MT COB Cytbi3 29.362805 203.582141 29.362805 175.219336 102.2910705 2.009837724 -0.163923 75 51 SH3601 3601 Val1 tRNA 1 15 165.642538 388.09101 276.866774 2.44227084 -0.085007 75 52 SH3979 3979 RNase MRP RNaseMRP 311 327 29.279333 137.880898 83.5801155 1.922102967 0.028029 75 53 SH20053 20053 YBR220C spliced 29.259966 159.945511 94.6027385 1.975903708 -0.091306 75 54 SH6952 6952 snR58 3' 33.480327 147.216772 90.3485495 1.955921185 0.255494 75 55 SH18111 18111 YLR367W_12_855877_857316_INTRON_698_1180 intron 29.258948 153.777893 29.258948 125.518945 77.3889465 1.888678935 0.101253 75 56 SH4612 4612 snR3 5' 31.378553 142.589257 86.983905 1.939438901 0.146817 75 57 SH17789 17789 YKL186C_11_93537_92746_INTRON_71_233 exon/intron 31.378095 187.515373 31.378095 157.137278 94.2576865 1.974316776 0.068086 75 58 SH10563 10563 RUF8 RUF8 741 757 33.472998 145.403217 89.4381075 1.951522601 0.265081 75 59 SH17282 17282 YHR141C_8_382752_381991_INTRON_5_445 intron 31.31452 201.281837 31.31452 170.967317 101.1409185 2.004926893 -0.018663 75 60 SH1535 1535 Leu3 3' flank 30.186879 149.975061 90.08097 1.954633054 0.025557 75 61 SH12773 12773 MT COX1 COX1ai1 29.03848 188.341509 29.03848 160.303029 94.6707545 1.976215838 -0.108884 75 62 SH14491 14491 MT 21S rRNA 21S rRNA3 28.923681 149.703779 28.923681 121.780098 75.3518895 1.877094147 0.102612 75 63 SH17249 17249 YHR097C_8_298611_297387_INTRON_126_249 intron 28.802175 204.278346 28.802175 176.476171 102.639173 2.011313144 -0.207222 75 64 SH14622 14622 MT 21S rRNA Sce1 endonuc 55.716694 266.679354 55.716694 211.96266 133.839677 2.12658488 0.043893 75 65 SH11324 11324 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3506 3522 23900.62417 23332.0353 23616.32973 4.373212404 -0.342722 75 66 SH151 151 Arg1 3' flank 30.557805 153.892477 92.225141 1.964849328 0.030014 75 67 SH11762 11762 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5696 5714 97.655707 265.241278 181.4484925 2.258753364 0.077931 75 68 SH20634 20634 YHR141C spliced 32.482461 185.766493 109.124477 2.037922175 -0.067967 75 69 SH340 340 Arg5 tRNA 36 53 44.753517 216.401481 130.577499 2.115868346 -0.152604 75 70 SH7795 7795 snoRNA cluster1 snR75 44.704476 241.028043 44.704476 197.323567 121.0140215 2.082835694 0.054344 75 71 SH3326 3326 Thr3 5' flank 30.331915 138.928104 84.6300095 1.92752439 0.096517 75 72 SH8352 8352 snoRNA cluster4 3' 54.934988 280.961676 54.934988 227.026688 140.980838 2.149160088 -0.112833 75 73 SH11496 11496 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4366 4383 141.730699 292.028413 216.879556 2.336218615 0.267565 75 74 SH11080 11080 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2286 2303 8639.075163 8025.771259 8332.423211 3.92077132 0.037019 75 75 SH11599 11599 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4881 4898 18946.84658 14488.00337 16717.42497 4.223169383 0.113702 75 76 SH19970 19970 YBL072C spliced 80.203157 268.425485 174.314321 2.241333069 -0.130937 75 77 SH8273 8273 snoRNA cluster4 snR67 76.314035 303.671948 76.314035 228.357913 152.335974 2.182802474 0.145207 75 78 SH5846 5846 snR35 snR35 416 433 29.721467 175.373035 102.547251 2.010924023 -0.142118 75 79 SH7832 7832 snoRNA cluster1 intergenic/snR74 30.875459 202.632897 30.875459 172.757438 101.8164485 2.007817944 -0.055642 75 80 SH1642 1642 Leu5 tRNA 76 92 610.887343 848.154635 729.520989 2.863037791 0.164636 75 81 SH17498 17498 YJL041W_10_365480_368069_INTRON_2_119 intron 28.984322 185.426415 28.984322 157.442093 93.2132075 1.969477452 -0.09817 75 82 SH2897 2897 Pro8 tRNA 6 22 188.101839 393.062359 290.582099 2.463268857 0.033125 75 83 SH15329 15329 YAL003W_1_142172_143158_INTRON_81_446 intron 29.111437 215.739646 29.111437 187.628209 108.369823 2.034908364 -0.249514 75 84 SH21694 21694 copy of SH10659 33.367235 164.882629 99.124932 1.996182902 0.136848 75 85 SH8228 8228 snoRNA cluster 3; 3' 29.189055 192.428354 29.189055 164.239299 96.714177 1.98549014 -0.117802 75 86 SH9751 9751 RUF4 RUF4 531 545 39.773961 168.881452 104.3277065 2.01839966 0.326502 75 87 SH13099 13099 MT COX1 COX1ai3 29.226526 206.082467 29.226526 177.855941 103.5412335 2.015113334 -0.187794 75 88 SH20662 20662 YIL052C spliced 35.562389 211.518773 123.540581 2.091809639 -0.242966 75 89 SH9335 9335 RUF1 RUF1 251 268 29.212669 150.375758 89.7942135 1.953248351 -0.044684 75 90 SH10680 10680 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 286 299 1019.747095 1190.582395 1105.164745 3.043427022 0.267798 75 91 SH7120 7120 snR63 snR63 106 124 29.13851 136.805824 82.972167 1.918932433 0.023975 75 92 SH3715 3715 Val3 tRNA 56 68 35.384339 160.814595 98.099467 1.991666648 0.271953 75 93 SH17097 17097 YHL001W_8_104270_105084_INTRON_130_527 intron 31.103287 198.291404 31.103287 168.188117 99.645702 1.998458571 -0.014664 75 94 SH876 876 Glu2 3' flank 31.012217 159.141931 95.077074 1.978075808 0.033476 75 95 SH21109 21109 YNL069C spliced 30.90597 160.68654 95.796255 1.981348531 0.018529 75 96 SH10291 10291 RUF7 RUF7 66 83 32.859264 164.870205 98.8647345 1.995041404 0.108247 75 97 SH18836 18836 YNL302C_14_62942_61957_INTRON_21_571 intron 27.549306 160.0298 27.549306 133.480494 80.5149 1.905876258 -0.07354 75 98 SH4442 4442 telomerase RNA telomerase 1246 1263 30.495619 175.377426 102.9365225 2.012569492 -0.094075 75 99 SH13448 13448 MT COX1 intronic 34.432007 189.185964 34.432007 155.753957 95.092982 1.978148467 0.253437 75 100 SH17724 17724 YKL156W_11_158616_159214_INTRON_4_353 intron 32.210873 212.896674 32.210873 181.685801 106.948337 2.029174036 -0.040544 75 101 SH7719 7719 snoRNA cluster1 snR77 34.071352 176.272063 34.071352 143.200711 88.6360315 1.947610303 0.314215 75 102 SH6714 6714 snR49 snR49 96 115 388.805196 582.090491 485.4478435 2.686142576 0.220662 75 103 SH15279 15279 MT 9S rRNA 9S 27.699591 178.805313 27.699591 152.105722 89.9026565 1.953772525 -0.1653 75 104 SH15480 15480 YBL091C-A_2_46858_46559_INTRON_35_122 3' exon 29.576486 213.880714 29.576486 185.304228 107.440357 2.031167443 -0.207224 76 2 SH17065 17065 YGR214W_7_920570_921783_INTRON_91_545 intron 29.267109 204.338681 29.267109 176.071572 102.6693405 2.011440772 -0.174955 76 3 SH10312 10312 RUF7 RUF7 171 193 27.378301 142.568878 84.9735895 1.929283964 -0.139411 76 4 SH12155 12155 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7661 7678 1668.632119 2396.21005 2032.421085 3.308013692 -0.194734 76 5 SH21825 21825 copy of SH16120 31.610472 170.744497 101.1774845 2.005083878 0.000247 76 6 SH8238 8238 snoRNA cluster 3; 3' 62.02354 237.838152 62.02354 176.814612 119.419076 2.077073707 0.514144 76 7 SH4594 4594 U3b (snR17b) 3' 33.94736 171.375976 102.661668 2.011408316 0.120935 76 8 SH1793 1793 Leu8 5' flank - tRNA8 8 44.295881 188.326054 116.3109675 2.065620668 0.155021 76 9 SH7754 7754 snoRNA cluster1 snR76 36.367188 212.053788 36.367188 176.6866 106.526894 2.027459265 0.151923 76 10 SH7179 7179 snR64 5' 28.370912 158.049952 93.210432 1.969464521 -0.145684 76 11 SH9145 9145 snR7 U5 RNA 5' - 8 -4 8 49.175417 198.563433 123.869425 2.092964122 0.100826 76 12 SH7283 7283 snR66 5' 30.748178 189.890364 110.319271 2.042651383 -0.170748 76 13 SH13976 13976 MT COB cytbi3/intron 28.820576 206.515249 28.820576 178.694673 103.7576245 2.01602002 -0.218721 76 14 SH12984 12984 MT COX1 COX1ai2 33.135293 196.29141 33.135293 164.156117 98.645705 1.994078181 0.128295 76 15 SH13638 13638 MT ATP6 ATP6 29.076579 185.350622 29.076579 157.274043 93.175311 1.969300851 -0.090709 76 16 SH11499 11499 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4381 4394 41.852628 196.968199 119.4104135 2.077042202 0.018437 76 17 SH11344 11344 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3606 3619 152.941464 317.136316 235.03889 2.371139727 0.194745 76 18 SH19710 19710 Negative Control 44.262009 197.534165 120.898087 2.082419429 0.045623 76 19 SH17836 17836 YKR094C_11_618384_617630_INTRON_9_376 intron 31.594393 217.732397 31.594393 187.138004 109.3661985 2.038883117 -0.113587 76 20 SH3214 3214 Thr1 5' flank 29.543286 151.367976 90.455631 1.956435608 -0.026657 76 21 SH13050 13050 MT COX1 COX1ai2 31.751969 194.915432 31.751969 164.163463 97.957716 1.99103865 0.048531 76 22 SH20681 20681 YIL111W spliced 29.676138 128.094395 78.8852665 1.896995897 0.113754 76 23 SH16811 16811 YGL178W_7_167356_170575_INTRON_4_643 5' exon 29.729745 207.541236 29.729745 178.811491 104.270618 2.018161948 -0.161325 76 24 SH5743 5743 snR35 5' 36.227075 172.302827 104.264951 2.018138343 0.189694 76 25 SH11445 11445 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4111 4127 149.184896 351.079946 250.132421 2.398169987 -0.017765 76 26 SH2390 2390 Phe4 tRNA 1 15 365.675367 547.124511 456.399939 2.659345578 0.248956 76 27 SH14870 14870 MT tRNA Ser2; tRNA Arg2 3' 29.816843 181.376536 29.816843 152.559693 91.188268 1.959938967 -0.013881 76 28 SH2887 2887 Pro8 5' flank 29.812536 168.189583 99.0010595 1.995639842 -0.093906 76 29 SH1469 1469 Leu2 3' flank 31.958066 131.400627 81.6793465 1.912112254 0.249917 76 30 SH20089 20089 YDL012C spliced 31.951551 167.785134 99.8683425 1.999427842 0.038073 76 31 SH377 377 Asn1 5' flank 29.795708 160.981771 95.3887395 1.97949711 -0.058883 76 32 SH15820 15820 YDL064W_4_337486_338069_INTRON_39_148 exon/intron 111.854965 439.657247 111.854965 328.802282 220.3286235 2.343070921 -0.195381 76 33 SH14385 14385 MT ORF9 and ORF10 (hypothetical) 3' 29.786237 197.963491 29.786237 169.177254 99.4817455 1.997743397 -0.101504 76 34 SH10519 10519 RUF8 RUF8 521 542 29.775989 164.327418 97.0517035 1.987003163 -0.07692 76 35 SH19709 19709 Negative Control 40.516042 180.519837 110.5179395 2.043432779 0.194436 76 36 SH5276 5276 snR30 snR30 231 247 34.035653 171.804871 102.920262 2.012500883 0.119829 76 37 SH15975 15975 YDL136W_4_217600_218367_INTRON_4_408 intron 31.863425 190.308269 31.863425 159.444844 95.6541345 1.980703746 0.084712 76 38 SH20961 20961 YML025C spliced 29.696082 179.423564 104.559823 2.019364839 -0.166914 76 39 SH2045 2045 Lys3 3' flank 29.676033 177.020959 103.348496 2.014304161 -0.15448 76 40 SH9338 9338 RUF1 RUF1 266 283 31.799731 185.750622 108.7751765 2.036529797 -0.09327 76 41 SH17018 17018 YGR148C_7_788173_787307_INTRON_1_392 intron 31.783205 182.095801 31.783205 151.312596 91.5479005 1.961648389 0.125306 76 42 SH3068 3068 Ser3 tRNA 36 54 42.481859 203.912493 123.197176 2.090600753 -0.051788 76 43 SH18561 18561 YMR292W_13_854795_855293_INTRON_23_104 intron 29.608412 163.415131 29.608412 134.806719 82.2075655 1.914911787 0.06914 76 44 SH18180 18180 YLR448W_12_1028848_1029762_INTRON_16_399 intron 31.718338 215.04702 31.718338 184.328682 108.02351 2.033518285 -0.083373 76 45 SH21598 21598 copy of SH6474 29.54664 182.266997 105.9068185 2.024923922 -0.192321 76 46 SH8360 8360 snoRNA cluster4 3' 33.760913 212.382561 33.760913 179.621648 106.6912805 2.028128928 0.035039 76 47 SH21854 21854 copy of SH17799 46.485687 180.676526 113.5811065 2.055306095 0.27874 76 48 SH5182 5182 snR13 snR13 66 82 42.12663 192.756564 117.441597 2.069821948 0.071747 76 49 SH9510 9510 RUF3 5' 31.432513 134.670031 83.051272 1.919346288 0.195841 76 50 SH3215 3215 Thr1 5' flank 31.372333 174.222146 102.7972395 2.011981452 -0.034375 76 51 SH20398 20398 YFR024C-A spliced 33.437437 162.651708 98.0445725 1.991423557 0.154618 76 52 SH9716 9716 RUF4 RUF4 356 372 33.408966 181.705134 107.55705 2.031638882 0.003025 76 53 SH18517 18517 YMR201C_13_667043_665844_INTRON_28_111 3' exon 37.623295 233.657284 37.623295 197.033989 117.328642 2.069404044 -0.048614 76 54 SH11144 11144 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2606 2623 15981.67288 9695.016598 12838.34474 4.108509033 0.532319 76 55 SH4800 4800 snR5 snR5 171 187 35.549662 165.198703 100.3741825 2.001622021 0.238131 76 56 SH1032 1032 Gly2 3' flank 33.461984 177.815739 105.6388615 2.023823712 0.041437 76 57 SH11613 11613 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4951 4964 751.107633 1023.593498 887.3505655 2.94809523 0.120396 76 58 SH1757 1757 Leu7 81-84 + 3' flank 81 29.240602 128.073647 78.6571245 1.895738066 0.083265 76 59 SH5705 5705 snR34 snR34 446 465 29.202411 150.247117 89.724764 1.952912325 -0.04472 76 60 SH15973 15973 YDL136W_4_217600_218367_INTRON_4_408 exon/intron 40.719387 254.861363 40.719387 215.141976 127.9306815 2.106974713 -0.199502 76 61 SH12675 12675 MT tRNA Trp 5' 29.030026 189.58626 29.030026 161.556234 95.29313 1.979061592 -0.115797 76 62 SH5105 5105 snR11 snR11 126 145 30.993164 160.894096 95.94363 1.982016146 0.02333 76 63 SH672 672 Gln2 3' flank 30.847157 184.461544 107.6543505 2.032031585 -0.123958 76 64 SH17947 17947 YLR128W_12_398531_399434_INTRON_4_97 intron 129.064885 421.249181 129.064885 293.184296 211.1245905 2.32453882 0.164343 76 65 SH10138 10138 RUF6 RUF6 536 548 32.625834 191.719544 112.172689 2.049887131 -0.115919 76 66 SH17920 17920 YLR061W_12_263195_263949_INTRON_13_401 3' exon 36.607243 219.915641 36.607243 184.308398 110.4578205 2.04319647 0.077426 76 67 SH19104 19104 YOR312C_15_901173_900242_INTRON_2_427 intron 40.586098 211.618546 40.586098 172.032448 106.309273 2.026571148 0.300541 76 68 SH5373 5373 snR31 5' 38.4303 168.336603 103.3834515 2.014451027 0.299717 76 69 SH9882 9882 RUF5-1 RUF5-1 216 230 32.232367 141.772684 87.0025255 1.939531859 0.207184 76 70 SH20306 20306 YER003C spliced 60.754529 218.606941 139.680735 2.145136512 0.044292 76 71 SH15965 15965 YDL130W_4_229906_230527_INTRON_115_415 intron 30.122202 197.165138 30.122202 168.042936 99.082569 1.995997258 -0.073702 76 72 SH2165 2165 Met2 5' flank 30.119095 171.106286 100.6126905 2.002652763 -0.092249 76 73 SH15259 15259 MT 9S rRNA 5' 30.143255 200.322978 30.143255 171.179723 100.661489 2.00286335 -0.091186 76 74 SH13194 13194 MT COX1 Exon4 30.196306 163.596904 30.196306 134.400598 82.298452 1.915391666 0.112899 76 75 SH11494 11494 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4356 4373 377.864018 513.381706 445.622862 2.648967464 0.395147 76 76 SH3740 3740 Val4 5' flank 30.380802 161.125966 95.753384 1.981154131 -0.019251 76 77 SH764 764 Gln4 3' flank 32.556206 168.505515 100.5308605 2.0022994 0.068767 76 78 SH6048 6048 snR37 snR37 156 175 36.82324 224.878218 130.850729 2.116776147 -0.36123 76 79 SH19627 19627 RNA14 2.2 30.749026 163.498935 97.1239805 1.987326473 -0.007349 76 80 SH3829 3829 RNaseP RNaseP 111 123 30.861384 161.860935 96.3611595 1.983902017 0.009634 76 81 SH5425 5425 snR31 snR31 191 207 30.958193 154.55402 92.7561065 1.967342511 0.053555 76 82 SH5983 5983 snR36 3' 26.85828 142.308921 84.5836005 1.927286168 -0.178376 76 83 SH21158 21158 YNL301C spliced 31.099466 166.66767 98.883568 1.995124129 -0.005667 76 84 SH20491 20491 YGL251C spliced 39.549654 196.228143 117.8888985 2.07147291 -0.006928 76 85 SH2462 2462 Phe5 81-91 + 3' flank 81 31.175059 194.333481 112.75427 2.052132998 -0.19326 76 86 SH14325 14325 MT VAR1 includes 5’ processing site VAR1 29.088197 184.441425 29.088197 156.353228 92.7207125 1.96717676 -0.085124 76 87 SH1980 1980 Lys2 3' flank 31.18534 171.569488 101.377414 2.005941209 -0.029963 76 88 SH18070 18070 YLR344W_12_819312_820142_INTRON_20_466 intron 334.752431 916.094377 334.752431 582.341946 458.5471885 2.661384035 0.037422 76 89 SH2212 2212 Phe1 5' flank 30.078763 204.417289 117.248026 2.06910554 -0.321509 76 90 SH5930 5930 snR36 snR36 106 121 74.223405 210.476929 142.350167 2.153357981 0.28715 76 91 SH18467 18467 YMR143W_13_551927_552902_INTRON_25_568 intron 33.105782 225.576345 33.105782 193.470563 113.2881725 2.054184571 -0.113767 76 92 SH16938 16938 YGR027C_7_534779_534126_INTRON_1_312 intron 30.94758 207.18429 30.94758 177.23671 104.092145 2.017417958 -0.077287 76 93 SH4750 4750 snR5 5' 7503.760581 6795.683529 7149.722055 3.854289159 0.119487 76 94 SH19311 19311 YPL198W_16_173151_174701_INTRON_12_420 intron 30.794174 177.575346 30.794174 147.781172 89.287673 1.950791505 0.078831 76 95 SH1820 1820 Leu8 3' flank 30.704434 150.763153 90.7337935 1.957769069 0.056591 76 96 SH7486 7486 snR71 snR71 46 66 30.601315 165.89053 98.2459225 1.992314535 -0.031105 76 97 SH14499 14499 MT 21S rRNA 21S rRNA3 516.702269 1407.169045 516.702269 891.466776 704.0845225 2.847624798 -0.126778 76 98 SH16103 16103 YDR059C_4_569765_569229_INTRON_48_137 3' exon 30.347272 199.7457 30.347272 170.398428 100.37285 2.001616256 -0.073929 76 99 SH3821 3821 RNaseP RNaseP 71 87 37.337944 215.157984 126.247964 2.101224383 -0.251923 76 100 SH9069 9069 snR14 / U4 RNA 5' 29.0294 146.185889 87.6076445 1.942542004 -0.035606 76 101 SH10166 10166 RUF6 RUF6 676 688 52.182488 178.781799 115.4821435 2.062514836 0.374655 76 102 SH13666 13666 MT ATP6 ATP6 29.730471 183.699543 29.730471 154.969072 92.3497715 1.965435825 -0.032596 76 103 SH21738 21738 copy of SH12343 39.634036 167.270941 103.4524885 2.014740942 0.344877 76 104 SH19067 19067 YOR293W_15_867094_867848_INTRON_53_489 intron 712.380457 1596.771046 712.380457 885.390589 798.885523 2.902484551 0.288389 77 2 SH10616 10616 RUF8 3' 93.432357 249.415704 171.4240305 2.234071702 0.154804 77 3 SH5418 5418 snR31 snR31 156 172 29.265134 139.353062 84.309098 1.925874443 0.018731 77 4 SH18513 18513 YMR201C_13_667043_665844_INTRON_28_111 intron 31.413891 185.610871 31.413891 155.19698 93.3054355 1.969906944 0.080517 77 5 SH12402 12402 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.596962 213.506146 33.596962 180.909184 107.253073 2.030409744 0.017155 77 6 SH12597 12597 MT_15S MT_15S 29.782953 183.980779 29.782953 155.197826 92.4903895 1.966096608 -0.03013 77 7 SH2371 2371 Phe4 5' flank 27.956758 144.166488 86.061623 1.934809532 -0.104061 77 8 SH7423 7423 snR69 snR69 16 32 32.207252 171.471404 101.839328 2.007915525 0.030894 77 9 SH20890 20890 YLR275W spliced 30.367773 163.677282 97.0225275 1.986872584 -0.032868 77 10 SH5902 5902 snR36 5' 28.49798 144.821004 86.659492 1.937816139 -0.067208 77 11 SH19840 19840 Negative Control 36.948016 193.504029 115.2260225 2.061550571 -0.022056 77 12 SH20849 20849 YLR048W spliced 49.674698 196.649509 123.1621035 2.090477098 0.129037 77 13 SH20322 20322 YER056C-A spliced 172.987403 357.589912 265.2886575 2.423718682 0.108937 77 14 SH17825 17825 YKR057W_11_551293_551878_INTRON_25_346 intron/exon 35.397066 214.467293 35.397066 180.070227 107.7336465 2.03235136 0.087523 77 15 SH508 508 Asp2 3' flank 48.236914 169.391845 108.8143795 2.03668629 0.448317 77 16 SH3491 3491 Tyr1 5' flank - tRNA10 10 35.674583 195.345439 115.510011 2.062619625 -0.067497 77 17 SH21907 21907 copy of SH19402 50.709779 167.343163 109.026471 2.037531955 0.506128 77 18 SH6460 6460 snR45 snR45 146 165 31.629383 157.116424 94.3729035 1.974847317 0.084747 77 19 SH17077 17077 YGR225W_7_945138_946919_INTRON_1184_1276 intron 29.571639 198.966612 29.571639 170.394973 99.983306 1.999927493 -0.122308 77 20 SH8578 8578 snR19 / U1 RNA U1 386 405 29.63316 167.209311 98.4212355 1.993088813 -0.100983 77 21 SH6082 6082 snR37 snR37 326 342 33.973525 147.580859 90.777192 1.957976745 0.283142 77 22 SH11544 11544 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4606 4621 12746.22548 5698.729118 9222.477301 3.964847595 1.085215 77 23 SH17853 17853 YKR095W-A_11_625432_625839_INTRON_39_113 exon/intron 31.90481 205.948673 31.90481 175.043863 103.4743365 2.01483265 -0.007693 77 24 SH4813 4813 snR5 3' 29.772956 156.426164 93.09956 1.968947628 -0.037213 77 25 SH12556 12556 MT_15S 5' / MT_15S 34.079925 224.678661 34.079925 191.598736 112.8393305 2.052460501 -0.062621 77 26 SH4524 4524 U3b (snR17b) U3b 176 192 31.920025 188.188963 110.054494 2.041607781 -0.110754 77 27 SH1641 1641 Leu5 tRNA-intron/exon 71 87 142.581539 357.879385 250.230462 2.398340178 -0.100623 77 28 SH7550 7550 snR79 3' 29.740561 163.401977 96.571269 1.984847938 -0.074816 77 29 SH14918 14918 MT tRNA Tyr tRNA 34.025176 187.281478 34.025176 154.256302 94.140739 1.973777603 0.241035 77 30 SH15437 15437 YBL072C_2_89435_88518_INTRON_1_308 intron 29.727936 178.123679 29.727936 149.395743 89.5618395 1.952123005 -0.003102 77 31 SH18982 18982 YOR096W_15_505793_506766_INTRON_145_545 intron 31.881298 215.449258 31.881298 184.56796 108.224629 2.034326106 -0.079423 77 32 SH15321 15321 YAL003W_1_142172_143158_INTRON_81_446 intron 129.768511 486.297558 129.768511 357.529047 243.648779 2.386764239 -0.197908 77 33 SH12790 12790 MT COX1 COX1ai1 31.907638 210.257949 31.907638 179.350311 105.6289745 2.023783063 -0.032221 77 34 SH21460 21460 copy of SH730 110.69527 276.032195 193.3637325 2.286375021 0.123658 77 35 SH1070 1070 Gly3 3' flank 29.765139 171.415346 100.5902425 2.002555855 -0.116182 77 36 SH3914 3914 RNase MRP 5' - 4 4 31.899922 153.08342 92.491671 1.966102626 0.123488 77 37 SH18742 18742 YNL162W_14_331319_332151_INTRON_5_516 intron 300.837286 782.939616 300.837286 483.10233 391.969808 2.593252616 0.221775 77 38 SH6245 6245 snR42 snR42 6 23 44.730668 165.800827 105.2657475 2.022287079 0.449688 77 39 SH13299 13299 MT COX1 COX1-ai5a 30.731909 212.392047 30.731909 182.660138 106.6960235 2.028148234 -0.120984 77 40 SH20498 20498 YGR001C spliced 30.693108 165.152243 97.9226755 1.990883271 -0.020974 77 41 SH10004 10004 RUF5-1 3' 29.587467 158.568233 94.07785 1.973487384 -0.061201 77 42 SH12098 12098 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7376 7394 29.552142 153.846791 91.6994665 1.962366809 -0.039193 77 43 SH1057 1057 Gly3 tRNA 21 37 44.460155 181.009601 112.734878 2.052058299 0.247794 77 44 SH19655 19655 SIR1 2.2 29.478233 142.048346 85.7632895 1.93330143 0.019082 77 45 SH17183 17183 YHR021C_8_148660_147862_INTRON_4_553 intron 111.573975 419.452358 111.573975 308.878383 210.226179 2.322686797 -0.080992 77 46 SH21541 21541 copy of SH4151 33.623449 167.410699 100.517074 2.002239838 0.135688 77 47 SH11958 11958 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6676 6689 2446.181528 2691.17458 2568.678054 3.409709675 0.128898 77 48 SH8947 8947 snR17a / U3a U3a 21 40 33.477484 176.090407 104.7839455 2.020294747 0.058445 77 49 SH2657 2657 Pro4 5' flank 31.295936 156.354234 93.825085 1.972318967 0.066691 77 50 SH8146 8146 snoRNA cluster 3; intergenic 31.238713 165.510659 31.238713 135.271946 83.2553295 1.920412044 0.179341 77 51 SH11093 11093 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2351 2364 31.200277 177.145647 104.172962 2.017755013 -0.061563 77 52 SH1186 1186 His1 3' flank 37.493375 188.074646 112.7840105 2.052247534 0.050292 77 53 SH17 17 Ala1 5' flank 33.297365 185.737549 109.517457 2.039483351 -0.038022 77 54 SH4582 4582 U3b (snR17b) 3' 34.382229 145.518763 89.950496 1.954003562 0.319793 77 55 SH2129 2129 Met1 tRNA 31 48 37.592579 173.362582 105.4775805 2.023160159 0.22367 77 56 SH4729 4729 snR4 181-186 + 3' 181 31.309411 156.805955 94.057683 1.973394276 0.065248 77 57 SH14019 14019 MT COB Exon4 31.337279 183.555648 31.337279 153.218369 92.277824 1.965097345 0.085844 77 58 SH15277 15277 MT 9S rRNA 9S 31.338364 206.235034 31.338364 175.89667 103.617517 2.015433181 -0.046119 77 59 SH10916 10916 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1466 1481 2263.779647 2385.508661 2324.644154 3.366356482 0.21549 77 60 SH6190 6190 snR40 snR40 11 27 35.438059 188.787547 112.112803 2.049655211 0.002166 77 61 SH14680 14680 MT 21S rRNA 21S rRNA4 29.017636 189.840752 29.017636 161.823116 95.420376 1.979641124 -0.11802 77 62 SH20507 20507 YGR027C spliced 30.969186 159.417086 95.193136 1.978605634 0.029195 77 63 SH19349 19349 YPL249C-A_16_76239_75699_INTRON_17_254 intron 49.540821 279.947379 49.540821 231.406558 140.4736895 2.147594989 -0.231745 77 64 SH9233 9233 snR6 / U6 RNA U6 36 55 112.455425 327.94916 220.2022925 2.342821836 -0.185086 77 65 SH20721 20721 YJL136C spliced 30.480314 161.225286 95.8528 1.981604804 -0.012964 77 66 SH2244 2244 Phe1 3' flank 49.808949 165.784365 107.796657 2.032605293 0.516758 77 67 SH6980 6980 snR60 5' 28.172516 128.754812 78.463664 1.894668584 0.002339 77 68 SH12013 12013 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6951 6973 27.060567 136.505812 81.7831895 1.912664044 -0.128927 77 69 SH16396 16396 YER044C-A_5_239773_238459_INTRON_64_151 3' exon 30.019204 173.920754 30.019204 144.90155 87.460377 1.941811345 0.041876 77 70 SH20485 20485 YGL232W spliced 34.003919 171.568516 102.7862175 2.011934884 0.121035 77 71 SH21349 21349 YPR132W spliced 35.993291 204.519712 120.2565015 2.080108565 -0.161159 77 72 SH16271 16271 YDR447C_4_1355542_1354818_INTRON_4_317 intron 84.778336 359.870202 84.778336 276.091866 180.435101 2.256321027 -0.134186 77 73 SH9023 9023 snR17a / U3a U3a 401 416 112.039606 277.701682 194.870644 2.28974642 0.124273 77 74 SH1051 1051 Gly3 5' flank - tRNA7 7 32.067023 199.70715 115.8870865 2.064035044 -0.205494 77 75 SH9749 9749 RUF4 RUF4 521 537 30.13516 163.015417 96.5752885 1.984866014 -0.045543 77 76 SH2515 2515 Pro1 66-72 + 3' flank 66 32.28703 169.025664 100.656347 2.002841165 0.050115 77 77 SH20388 20388 YFL034C-B spliced 29.347929 158.069618 93.7087735 1.971780254 -0.07552 77 78 SH20868 20868 YLR128W spliced 29.468484 151.753422 90.610953 1.957180698 -0.033978 77 79 SH20683 20683 YIL111W spliced 32.677799 192.509013 112.593406 2.051512957 -0.120947 77 80 SH8738 8738 LSR1 / U2 RNA U2 331 347 36.936991 149.951063 93.444027 1.970551546 0.423295 77 81 SH16631 16631 YFL039C_6_54695_53260_INTRON_11_318 3' exon 33.928172 165.956935 33.928172 133.028763 83.4784675 1.921574468 0.365164 77 82 SH21383 21383 Lys3_4 spliced 124.686387 303.038162 213.8622745 2.330134181 0.067481 77 83 SH20904 20904 YLR316C spliced 56.052884 201.367456 128.71017 2.109612864 0.158766 77 84 SH19411 19411 YPR098C_16_729525_728944_INTRON_48_143 intron 26.813924 143.573267 26.813924 117.759343 72.2866335 1.859057999 -0.025062 77 85 SH13609 13609 MT ATP8/AAP1 3' 28.92013 185.462506 28.92013 157.542376 93.231253 1.969561521 -0.103287 77 86 SH6820 6820 snR52 snR52 6 23 12920.33671 12061.86939 12491.10305 4.096600791 -0.090454 77 87 SH11305 11305 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3411 3426 2589.926154 2982.556735 2786.241445 3.445018748 0.042539 77 88 SH3615 3615 Val1 71-74 + 3' flank 71 30.951856 146.206486 88.579171 1.947331611 0.098109 77 89 SH18908 18908 YOL120C_15_94401_93394_INTRON_113_559 intron 30.895087 152.515324 30.895087 122.620237 76.757662 1.885121738 0.232569 77 90 SH15528 15528 YBR048W_2_332790_333771_INTRON_46_556 intron 30.826586 159.766883 30.826586 129.940297 80.3834415 1.905166596 0.182708 77 91 SH6787 6787 snR50 3' 26.611391 111.427087 69.019239 1.838970166 0.005553 77 92 SH3649 3649 Val2 5' flank - tRNA6 6 32.745135 155.88695 94.3160425 1.974585569 0.158667 77 93 SH8334 8334 snoRNA cluster4 snR53 58.547591 263.930148 58.547591 206.382557 132.465074 2.122101386 0.138234 77 94 SH12846 12846 MT COX1 COX1ai1 30.529631 213.737423 30.529631 184.207792 107.3687115 2.030877741 -0.141901 77 95 SH15723 15723 YBR255C-A_2_727032_726576_INTRON_64_157 intron 30.450992 210.502237 30.450992 181.051245 105.7511185 2.024284969 -0.129162 77 96 SH21665 21665 copy of SH9400 30.36196 151.517967 90.9399635 1.958754776 0.029267 77 97 SH6789 6789 snR50 3' 30.257616 129.963754 80.110685 1.903690445 0.143332 77 98 SH7755 7755 snoRNA cluster1 snR76 781.444636 1322.809163 781.444636 542.364527 661.9045815 2.820795387 1.202723 77 99 SH6044 6044 snR37 snR37 136 155 36.074615 182.112547 109.093581 2.037799198 0.091205 77 100 SH9564 9564 RUF3 RUF3 206 225 29.847984 133.343263 81.5956235 1.911666865 0.094619 77 101 SH5749 5749 snR35 5' 31.699428 159.260806 95.480117 1.979912943 0.07624 77 102 SH6500 6500 snR46 5' - 7 -9 7 33.537926 180.389777 106.9638515 2.029237032 0.0199 77 103 SH13001 13001 MT COX1 COX1ai2 29.389177 178.362706 29.389177 149.973529 89.681353 1.952702152 -0.030013 77 104 SH16964 16964 YGR034W_7_555923_556666_INTRON_20_496 intron 41.216072 249.142771 41.216072 208.926699 125.0713855 2.097157961 -0.125456 78 2 SH4111 4111 SRP RNA SRP RNA 446 460 32.923014 163.55133 98.237172 1.992275852 0.12003 78 3 SH19902 19902 snR17B spliced 51.004487 184.723765 117.864126 2.07138164 0.286582 78 4 SH10002 10002 RUF5-1 3' 29.373051 193.648334 111.5106925 2.047316513 -0.264876 78 5 SH14126 14126 MT COB Exon5 29.590989 186.375378 29.590989 157.784389 93.687689 1.971682526 -0.05694 78 6 SH4375 4375 telomerase RNA telomerase 911 927 29.81835 153.856881 91.8376155 1.963020599 -0.020635 78 7 SH620 620 Gln1 3' flank 56.481101 247.730392 152.1057465 2.182145622 -0.274066 78 8 SH9448 9448 RUF2 RUF2 81 97 32.316052 149.683268 90.99966 1.95903977 0.168581 78 9 SH14608 14608 MT 21S rRNA Sce1 endonuc 28.438372 195.698209 28.438372 168.259837 98.3491045 1.99277041 -0.191465 78 10 SH14968 14968 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.692735 223.901862 30.692735 194.209127 112.450931 2.050963055 -0.210858 78 11 SH10266 10266 RUF7 5' 39.204549 171.379467 105.292008 2.022395408 0.284321 78 12 SH16022 16022 YDL189W_4_122079_123590_INTRON_1_99 intron 28.953041 171.900239 28.953041 143.947198 86.4501195 1.936765598 -0.029127 78 13 SH13251 13251 MT COX1 COX1-ai4 29.09324 162.1571 29.09324 134.06386 81.57855 1.911575982 0.036479 78 14 SH20880 20880 YLR211C spliced 106.590186 280.781978 193.686082 2.287098414 0.053957 78 15 SH13116 13116 MT COX1 COX1ai3 29.333212 164.229058 29.333212 135.895846 82.614529 1.917056431 0.043202 78 16 SH10938 10938 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1576 1589 40.070548 179.400239 109.7353935 2.040346725 0.200164 78 17 SH2790 2790 Pro6 tRNA-intron 41 57 29.518961 179.270946 104.3949535 2.018679505 -0.177233 78 18 SH6722 6722 snR49 snR49 136 155 29.589657 131.842467 80.716062 1.906959965 0.085133 78 19 SH3503 3503 Tyr1 tRNA 56 68 36.071047 192.648158 114.3596025 2.058272637 -0.029397 78 20 SH20368 20368 YER133W spliced 38.269621 176.025919 107.14777 2.029983137 0.208984 78 21 SH7389 7389 snR68 3' 40.457566 207.877558 124.167562 2.094008154 -0.125099 78 22 SH4967 4967 snR9 3' 34.025215 180.523876 107.2745455 2.030496683 0.035926 78 23 SH5015 5015 snR10 snR10 106 124 53.424895 184.31416 118.8695275 2.075070536 0.32104 78 24 SH138 138 Arg1 66-73 + 3' flank 66 3' flank 29.723557 166.600277 98.161917 1.991943031 -0.091706 78 25 SH17534 17534 YJL177W_10_90783_91654_INTRON_310_626 intron 29.704047 208.616628 29.704047 179.912581 104.808314 2.020395735 -0.169178 78 26 SH10065 10065 RUF6 RUF6 171 188 31.820942 191.218533 111.5197375 2.047351738 -0.141428 78 27 SH8375 8375 snoRNA cluster 5 5' 31.79115 204.258882 31.79115 173.467732 102.629441 2.011271963 -0.005175 78 28 SH16402 16402 YER056C-A_5_270183_269421_INTRON_38_434 intron 36.051072 221.594082 36.051072 186.54301 111.297041 2.046483618 0.040348 78 29 SH11213 11213 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2951 2964 40.325641 171.24893 105.7872855 2.024433473 0.305928 78 30 SH13706 13706 MT tRNAGlu (and 5' processing site for COB) tRNA 83.412961 372.195163 83.412961 289.782202 186.5975815 2.270906011 -0.243218 78 31 SH3679 3679 Val2 3' flank 31.784361 167.059444 99.4219025 1.997482069 0.03267 78 32 SH13558 13558 MT COX1 Exon 6 29.674511 185.840733 29.674511 157.166222 93.4203665 1.970441567 -0.04791 78 33 SH1426 1426 Leu2 5' flank 29.707027 165.851152 97.7790895 1.990245989 -0.089209 78 34 SH5380 5380 snR31 5' 30.805998 139.834029 85.3200135 1.931050915 0.124115 78 35 SH6186 6186 snR40 5' - 9 -9 9 46.957872 232.92113 139.939501 2.145940321 -0.282897 78 36 SH16989 16989 YGR118W_7_726968_727725_INTRON_66_385 intron 31.885946 184.652471 31.885946 153.766525 92.8262355 1.967670738 0.118971 78 37 SH1959 1959 Lys2 5' flank - tRNA11 11 40.451612 185.611465 113.0315385 2.053199639 0.132732 78 38 SH18936 18936 YOL121C_15_92849_92025_INTRON_21_410 intron 29.673456 179.751775 29.673456 151.078319 90.3758875 1.956052575 -0.015981 78 39 SH11286 11286 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3316 3333 42.468753 187.402834 114.9357935 2.060455298 0.140971 78 40 SH15138 15138 MT tRNA Thr1 reverse complement 5' 29.564056 166.293701 29.564056 137.729645 83.6468505 1.922449593 0.049266 78 41 SH19252 19252 YPL129W_16_305297_306136_INTRON_10_114 intron 29.507148 185.376898 29.507148 156.86975 93.188449 1.969362084 -0.058118 78 42 SH12791 12791 MT COX1 COX1ai1 31.57948 203.617881 31.57948 173.038401 102.3089405 2.009913587 -0.015146 78 43 SH16434 16434 YER074W_5_306319_307192_INTRON_4_469 intron 31.525632 199.287561 31.525632 168.761929 100.1437805 2.000623982 0.007089 78 44 SH19838 19838 Negative Control 33.592684 175.566596 104.57964 2.019447143 0.067587 78 45 SH18906 18906 YOL120C_15_94401_93394_INTRON_113_559 intron 53.697192 273.468582 53.697192 220.77139 137.234291 2.137462643 -0.070711 78 46 SH493 493 Asp2 tRNA 26 38 129.673258 276.759951 203.2166045 2.307959191 0.276918 78 47 SH17176 17176 YHR021C_8_148660_147862_INTRON_4_553 intron 35.496383 217.79175 35.496383 183.295367 109.395875 2.039000946 0.060924 78 48 SH5511 5511 snR32 3' 29.104413 144.529491 86.816952 1.938604534 -0.021291 78 49 SH11037 11037 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2071 2089 31.135414 180.626147 105.8807805 2.024817134 -0.085222 78 50 SH18207 18207 YML024W_13_225889_226697_INTRON_4_401 intron/exon 41.562679 218.024318 41.562679 177.461639 109.512159 2.039462341 0.249693 78 51 SH17596 17596 YJL191W_10_73786_74610_INTRON_11_418 intron 31.04758 195.571701 31.04758 165.524121 98.2858505 1.992491 -0.001793 78 52 SH14075 14075 MT COB Cytbi4 28.954073 191.389366 28.954073 163.435293 96.194683 1.983151068 -0.130601 78 53 SH11026 11026 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2016 2033 2382.873654 2044.434344 2213.653999 3.34510974 0.524538 78 54 SH16212 16212 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 33.217638 206.823106 33.217638 174.605468 103.911553 2.016663836 0.063401 78 55 SH13718 13718 MT tRNAGlu (and 5' processing site for COB) 3' (and 5' proc site for COB) 31.184177 224.687997 31.184177 194.50382 112.8439985 2.052478466 -0.194388 78 56 SH12643 12643 MT_15S MT_15S 30.19436 188.136333 30.19436 158.941973 94.5681665 1.975744969 -0.020971 78 57 SH19149 19149 YPL075W_16_412249_415357_INTRON_9_759 intron 31.292236 203.838957 31.292236 173.546721 102.4194785 2.01038256 -0.035207 78 58 SH8499 8499 snR19 / U1 RNA 5' - 8 -9 8 31.306446 187.88774 109.597093 2.039799035 -0.131302 78 59 SH14742 14742 MT ORF11; tRNA Leu; tRNA Gln 5' 33.38687 217.72177 33.38687 185.3349 109.360885 2.038862016 -0.031144 78 60 SH6015 6015 snR37 5' - 8 -9 8 35.412475 201.684519 118.548497 2.073896052 -0.142266 78 61 SH16483 16483 YER102W_5_362729_363698_INTRON_1_360 intron 33.181867 221.995541 33.181867 189.813674 111.4977705 2.047266183 -0.078816 78 62 SH16616 16616 YFL039C_6_54695_53260_INTRON_11_318 intron 33.017897 222.322719 33.017897 190.304822 111.6613595 2.047902911 -0.089111 78 63 SH19739 19739 Negative Control 32.829386 202.068178 117.448782 2.069848517 -0.19999 78 64 SH4746 4746 snR5 5' 30.570464 171.266736 100.9186 2.003971217 -0.065395 78 65 SH5797 5797 snR35 snR35 171 195 30.388054 138.684386 84.53622 1.927042825 0.101779 78 66 SH6159 6159 snR39B 3' 31.237114 158.167103 94.7021085 1.976359648 0.053449 78 67 SH17457 17457 YIL148W_9_68708_69528_INTRON_9_442 intron 30.069543 211.415548 30.069543 182.346005 106.207774 2.026156307 -0.159967 78 68 SH6358 6358 snR43 snR43 31 43 31.964034 165.105643 98.5348385 1.993589809 0.05516 78 69 SH16299 16299 YDR450W_4_1359912_1360787_INTRON_48_482 intron 29.850202 210.592702 29.850202 181.7425 105.796351 2.024470689 -0.170285 78 70 SH20299 20299 YEL012W spliced 29.788095 177.500144 103.6441195 2.015544666 -0.150181 78 71 SH19101 19101 YOR312C_15_901173_900242_INTRON_2_427 intron 27.756966 166.410476 27.756966 139.65351 83.705238 1.922752636 -0.09438 78 72 SH4985 4985 snR10 5' 27.767779 120.122316 73.9450475 1.868909092 0.030093 78 73 SH3283 3283 Thr2 tRNA 16 30 49.983066 259.952588 154.967827 2.190241543 -0.472521 78 74 SH13685 13685 MT ORF 5 (hypothetical) ORF5 29.900363 182.81904 29.900363 153.918677 91.90952 1.963360498 -0.015261 78 75 SH12457 12457 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank / 5S 119.151599 411.102716 119.151599 292.951117 206.051358 2.313975481 0.084672 78 76 SH68 68 Ala2 5' flank 30.117811 170.401822 100.2598165 2.001126905 -0.088137 78 77 SH15072 15072 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.237165 213.428619 30.237165 184.191454 107.2143095 2.030252753 -0.159806 78 78 SH10954 10954 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1656 1673 21684.24415 16348.82108 19016.53261 4.279131333 0.096396 78 79 SH16100 16100 YDR059C_4_569765_569229_INTRON_48_137 intron 28.406059 166.571928 28.406059 139.165869 83.785964 1.923171271 -0.042971 78 80 SH14248 14248 MT tRNA Ser 3' 30.550001 194.261973 30.550001 164.711972 97.6309865 1.989587678 -0.026998 78 81 SH14089 14089 MT COB Cytbi4 32.692908 234.62529 32.692908 202.932382 117.812645 2.071191906 -0.212232 78 82 SH9150 9150 snR7 U5 RNA U5 21 33 27782.31458 21861.58082 24821.9477 4.394835856 -0.044157 78 83 SH18507 18507 YMR194W_13_651144_651909_INTRON_17_479 intron/exon 32.815034 189.853191 32.815034 158.038157 95.4265955 1.97966943 0.148728 78 84 SH1306 1306 Ile3 5' flank 30.776789 152.340167 91.558478 1.961698565 0.053046 78 85 SH20452 20452 YGL137W spliced 28.717893 169.04006 98.8789765 1.995103962 -0.174914 78 86 SH18338 18338 YML124C_13_23684_22049_INTRON_26_323 intron 30.785498 187.722542 30.785498 157.937044 94.361271 1.974793782 0.024405 78 87 SH11291 11291 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3341 3359 28.683901 136.865318 82.7746095 1.917897141 -0.009481 78 88 SH12742 12742 MT COX1 COX1ai1 30.703342 213.317841 30.703342 183.614499 107.1589205 2.03002833 -0.128017 78 89 SH11571 11571 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4741 4756 6566.825338 1435.887642 4001.35649 3.602207245 2.413111 78 90 SH13166 13166 MT COX1 intronic 32.610937 212.984291 32.610937 181.373354 106.9921455 2.029351896 -0.022853 78 91 SH11822 11822 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5996 6011 53.120527 198.643763 125.882145 2.099964135 0.151755 78 92 SH17765 17765 YKL157W_11_154993_158183_INTRON_282_664 3' exon 32.431947 169.621011 32.431947 138.189064 85.3105055 1.931002515 0.240735 78 93 SH11174 11174 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2756 2773 121.356043 315.247643 218.301843 2.339057402 -0.033872 78 94 SH2107 2107 Met1 5' flank 34.311234 174.868838 104.590036 2.019490312 0.099661 78 95 SH13641 13641 MT ATP6 ATP6 34.228263 201.45502 34.228263 168.226757 101.22751 2.005298554 0.162104 78 96 SH2453 2453 Phe5 tRNA-exon/intron 36 53 34.13729 202.338848 118.238069 2.072757328 -0.175267 78 97 SH16099 16099 YDR059C_4_569765_569229_INTRON_48_137 intron 32.00781 177.358514 32.00781 146.350704 89.179257 1.95026385 0.16693 78 98 SH1377 1377 Leu1 5' flank 27.860774 169.780793 98.8207835 1.994848293 -0.241339 78 99 SH21061 21061 YMR194W spliced 29.74487 154.564353 92.1546115 1.964517073 -0.029472 78 100 SH4830 4830 snR8 5' 29.601352 158.890302 94.245827 1.97426213 -0.061871 78 101 SH19629 19629 RNA14 2.2 63.460359 255.490359 159.475359 2.202693588 -0.240363 78 102 SH6549 6549 snR46 3' 29.295507 156.606122 92.9508145 1.9682532 -0.071695 78 103 SH10644 10644 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 106 128 29.144973 143.593406 86.3691895 1.936358844 -0.013294 78 104 SH2288 2288 Phe2 tRNA-exon/intron 36 53 32.947562 187.171721 110.0596415 2.041628094 -0.063653 79 2 SH17756 17756 YKL157W_11_154993_158183_INTRON_282_664 intron 26.900817 158.827231 26.900817 132.926414 79.9136155 1.90262078 -0.119083 79 3 SH9326 9326 RUF1 RUF1 206 223 72.779862 230.793712 151.786787 2.181233968 0.083146 79 4 SH15395 15395 YBL050W_2_125087_126081_INTRON_31_146 5' exon 27.350417 192.104104 27.350417 165.753687 96.552052 1.984761508 -0.260261 79 5 SH9025 9025 snR17a / U3a U3a 411 427 37.593189 191.214253 114.403721 2.05844015 0.016117 79 6 SH9631 9631 RUF4 5' 35.903379 191.642873 113.773126 2.056039691 -0.021298 79 7 SH13853 13853 MT COB Cytbi2 28.089744 173.31667 28.089744 146.226926 87.158335 1.940308925 -0.105125 79 8 SH14304 14304 MT VAR1 includes 5’ processing site VAR1 28.325977 202.796569 28.325977 175.470592 101.8982845 2.008166873 -0.233676 79 9 SH6135 6135 snR39B snR39B 16 28 30.605567 167.762703 99.184135 1.99644221 -0.042247 79 10 SH10967 10967 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1721 1739 460.58024 797.952524 629.266382 2.798834531 -0.089691 79 11 SH3827 3827 RNaseP RNaseP 101 113 35.180994 181.83708 108.509037 2.035465909 0.063711 79 12 SH16416 16416 YER056C-A_5_270183_269421_INTRON_38_434 intron 29.068082 188.179296 29.068082 160.111214 94.589648 1.975843609 -0.105799 79 13 SH9538 9538 RUF3 RUF3 76 92 29.202646 160.946386 95.074516 1.978064123 -0.100429 79 14 SH8076 8076 snoRNA cluster 2 snR61 48.415369 266.487656 48.415369 219.072287 133.743828 2.126273749 -0.127156 79 15 SH17561 17561 YJL189W_10_75932_76473_INTRON_7_392 intron 29.426936 203.222565 29.426936 174.795629 102.1112825 2.009073731 -0.157385 79 16 SH13305 13305 MT COX1 COX1-ai5a 29.517183 169.415478 29.517183 140.898295 85.207739 1.930479041 0.028198 79 17 SH20439 20439 YGL087C spliced 33.864728 207.796706 120.830717 2.082177353 -0.238906 79 18 SH14629 14629 MT 21S rRNA Sce1 endonuc 29.646268 190.128762 29.646268 161.482494 95.564381 1.980296051 -0.071834 79 19 SH19948 19948 YBL050W spliced 31.825907 177.671673 104.74879 2.020149015 -0.027461 79 20 SH11715 11715 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5461 5476 549.097555 581.816036 565.4567955 2.752399428 0.647209 79 21 SH6226 6226 snR42 5' 32.92098 194.988883 113.9549315 2.056733124 -0.133664 79 22 SH6898 6898 snR56 3' 33.980676 164.927874 99.454275 1.997623456 0.170625 79 23 SH5789 5789 snR35 snR35 131 147 33.953238 164.8789 99.416069 1.997456587 0.169417 79 24 SH8525 8525 snR19 / U1 RNA U1 121 137 150.477402 380.921297 265.6993495 2.424390491 -0.156088 79 25 SH3429 3429 Trp1 5' flank 29.593091 125.088648 77.3408695 1.88840905 0.127453 79 26 SH6427 6427 snR45 5' 27.419396 159.057243 93.2383195 1.969594437 -0.221626 79 27 SH6353 6353 snR43 snR43 6 21 33.781221 133.034151 83.407686 1.921206073 0.356124 79 28 SH5632 5632 snR34 snR34 81 100 29.493552 130.410375 79.9519635 1.902829134 0.086792 79 29 SH20736 20736 YJL191W spliced 31.618662 205.192632 118.405647 2.073372415 -0.268087 79 30 SH21512 21512 copy of SH2857 70.176606 200.282352 135.229479 2.131071375 0.343071 79 31 SH15186 15186 MT COX3 cox3 29.5428 220.499437 29.5428 191.956637 110.7497185 2.044342631 -0.245189 79 32 SH4063 4063 SRP RNA SRP RNA 206 225 31.72802 208.017387 119.8727035 2.0787203 -0.287328 79 33 SH2323 2323 Phe3 5' flank 29.643348 154.972609 92.3079785 1.96523924 -0.038705 79 34 SH11277 11277 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3271 3288 31.828855 158.464866 95.1468605 1.978394463 0.088947 79 35 SH16637 16637 YFR024C-A_6_203420_201947_INTRON_48_165 intron 31.854563 176.811517 31.854563 145.956954 88.9057585 1.948929891 0.159153 79 36 SH1323 1323 Ile3 5' flank - tRNA12 12 33.998938 169.035646 101.517292 2.006540024 0.145957 79 37 SH5949 5949 snR36 snR36 201 223 29.681074 127.909267 78.7951705 1.8964996 0.115232 79 38 SH2765 2765 Pro6 5' flank 29.629337 169.192987 99.411162 1.99743515 -0.111472 79 39 SH4064 4064 SRP RNA SRP RNA 211 229 35.965329 199.892358 117.9288435 2.07162004 -0.111867 79 40 SH7886 7886 snoRNA cluster1 snR73/intergenic 29.48474 171.196307 29.48474 142.711567 86.0981535 1.934993837 0.015917 79 41 SH21895 21895 copy of SH19000 29.408938 162.707891 96.0584145 1.982535414 -0.094638 79 42 SH17108 17108 YHR001W-A_8_107819_108115_INTRON_7_69 exon/intron 42.063057 236.476403 42.063057 195.413346 118.7382015 2.074590466 0.039558 79 43 SH13056 13056 MT COX1 COX1ai2 29.275184 188.079569 29.275184 159.804385 94.5397845 1.975614608 -0.089512 79 44 SH20930 20930 YLR388W spliced 31.324035 168.769273 100.046654 2.000202568 -0.004948 79 45 SH17889 17889 YLR048W_12_242233_243350_INTRON_91_449 intron 31.258714 212.374829 31.258714 182.116115 106.6874145 2.02811319 -0.08618 79 46 SH2089 2089 Lys4 3' flank 31.187584 150.65369 90.920637 1.95866247 0.089581 79 47 SH12082 12082 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7296 7315 35.302712 180.892497 108.0976045 2.03381607 0.076637 79 48 SH20335 20335 YER074W-A spliced 28.940305 147.404932 88.1726185 1.945333738 -0.048552 79 49 SH3793 3793 RNaseP 5' flank 30.955363 147.881038 89.4182005 1.951425926 0.089118 79 50 SH17894 17894 YLR048W_12_242233_243350_INTRON_91_449 intron/exon 30.899077 182.021699 30.899077 152.122622 91.5108495 1.961472587 0.062433 79 51 SH9768 9768 RUF4 RUF4 616 632 32.950803 181.115995 107.033399 2.029519317 -0.008037 79 52 SH19746 19746 Negative Control 30.877187 179.873478 105.3753325 2.022738958 -0.096548 79 53 SH20168 20168 YDL136W spliced 33.001523 179.261844 106.1316835 2.025845053 0.01117 79 54 SH12936 12936 MT COX1 COX1ai2 28.90101 210.072692 28.90101 182.171682 105.536346 2.023402053 -0.23309 79 55 SH7876 7876 snoRNA cluster1 snR73 28.980162 169.533696 28.980162 141.553534 85.266848 1.930780209 -0.014087 79 56 SH17071 17071 YGR225W_7_945138_946919_INTRON_1184_1276 5' exon 31.156461 192.036056 31.156461 161.879595 96.518028 1.98460844 0.027371 79 57 SH12896 12896 MT COX1 intronic 30.169685 200.91611 30.169685 171.746425 100.958055 2.004140975 -0.092906 79 58 SH8694 8694 LSR1 / U2 RNA U2 111 128 36.51844 173.631253 105.0748465 2.021498764 0.18633 79 59 SH5291 5291 snR30 snR30 306 323 31.232426 177.304472 104.268449 2.018152913 -0.060548 79 60 SH17911 17911 YLR061W_12_263195_263949_INTRON_13_401 intron 28.014412 147.030886 28.014412 120.016474 74.015443 1.869322343 0.04901 79 61 SH9027 9027 snR17a / U3a U3a 421 437 34.180888 155.181278 94.681083 1.976263217 0.243496 79 62 SH6531 6531 snR46 snR46 146 163 30.880336 149.803828 90.342082 1.955890095 0.073617 79 63 SH13225 13225 MT COX1 COX1-ai4 30.690765 195.086975 30.690765 165.39621 98.0434875 1.991418751 -0.022616 79 64 SH16201 16201 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 412.000289 1066.156575 412.000289 655.156286 533.5782875 2.727198149 0.095872 79 65 SH9710 9710 RUF4 RUF4 326 341 32.327439 162.932285 97.629862 1.989582675 0.089756 79 66 SH16175 16175 YDR305C_4_1073479_1072737_INTRON_88_176 intron 30.096277 170.031057 30.096277 140.93478 85.5155285 1.932044984 0.068916 79 67 SH8133 8133 snoRNA cluster 3; snR41 29.928132 177.274794 29.928132 148.346662 89.137397 1.950059948 0.016536 79 68 SH20917 20917 YLR344W spliced 29.788651 160.001134 94.8948925 1.977242838 -0.054425 79 69 SH16275 16275 YDR447C_4_1355542_1354818_INTRON_4_317 intron 33.687649 225.429454 33.687649 192.741805 113.214727 2.053902924 -0.086527 79 70 SH2022 2022 Lys3 tRNA-intron/exon 56 72 98.859743 277.614088 188.2369155 2.274704798 0.002374 79 71 SH6033 6033 snR37 snR37 81 98 29.595051 146.268723 87.931887 1.944146393 0.004596 79 72 SH3156 3156 Ser5 5' flank 29.613986 126.894383 78.2541845 1.89350757 0.117027 79 73 SH4341 4341 telomerase RNA telomerase 741 758 27.671634 126.251973 76.9618035 1.886275236 -0.018287 79 74 SH7880 7880 snoRNA cluster1 snR73 31.763734 170.201847 31.763734 139.438113 85.6009235 1.93247845 0.19024 79 75 SH8650 8650 snR19 / U1 RNA 3' 29.862294 150.098597 89.9804455 1.954148139 0.002455 79 76 SH21395 21395 Pro2_7 spliced 48.205678 196.079272 122.142475 2.086866716 0.116494 79 77 SH9154 9154 snR7 U5 RNA U5 41 55 36.170841 194.223484 115.1971625 2.061441782 -0.045179 79 78 SH18493 18493 YMR194W_13_651144_651909_INTRON_17_479 intron 31.198234 206.02401 31.198234 175.825776 103.512005 2.014990721 -0.054087 79 79 SH17731 17731 YKL156W_11_158616_159214_INTRON_4_353 intron 30.266155 192.938428 30.266155 163.672273 96.969214 1.986633875 -0.039799 79 80 SH10391 10391 RUF7 3' 28.294148 164.906403 96.6002755 1.984978365 -0.185708 79 81 SH13923 13923 MT COB Cytbi3 28.349557 197.231911 28.349557 169.882354 99.1159555 1.996143572 -0.20573 79 82 SH2784 2784 Pro6 tRNA 11 28 65.480357 165.247127 115.363742 2.062069335 0.700139 79 83 SH2844 2844 Pro7 tRNA-exon/intron 26 38 32.539379 174.454336 103.4968575 2.014927163 0.03255 79 84 SH11446 11446 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4116 4131 571.121756 864.653723 717.8877395 2.856056536 0.048723 79 85 SH2495 2495 Pro1 5' flank 30.52113 162.559655 96.5403925 1.98470906 -0.016864 79 86 SH13587 13587 MT COX1 3' 28.455673 180.353733 28.455673 152.89806 90.6768665 1.957496504 -0.112646 79 87 SH20042 20042 YBR189W spliced 103.728314 249.355602 176.541958 2.246847939 0.254769 79 88 SH621 621 Gln1 3' flank 59.234087 215.029964 137.1320255 2.137138891 0.059793 79 89 SH6201 6201 snR40 snR40 66 84 54.969576 221.992674 138.481125 2.141390583 -0.064672 79 90 SH4101 4101 SRP RNA SRP RNA 396 412 34.339475 164.170132 99.2548035 1.996751534 0.194939 79 91 SH3420 3420 Trp1 5' flank 34.235936 173.770674 104.003305 2.01704714 0.107659 79 92 SH13279 13279 MT COX1 Exon 5a 30.079419 173.879968 30.079419 144.800549 87.439984 1.941710069 0.0466 79 93 SH1233 1233 Ile1 3' flank 29.997777 167.846382 98.9220795 1.995293237 -0.080251 79 94 SH11836 11836 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6066 6084 29.922517 166.104874 98.0136955 1.991286764 -0.075448 79 95 SH6442 6442 snR45 snR45 56 72 35.889961 171.125838 103.5078995 2.014973495 0.190061 79 96 SH4502 4502 U3b (snR17b) U3b 66 83 29.77232 174.712774 102.242547 2.00963166 -0.13509 79 97 SH5835 5835 snR35 snR35 361 378 29.683972 169.033181 99.3585765 1.997205361 -0.107068 79 98 SH1623 1623 Leu5 5' flank - tRNA1 1 27.586042 142.656755 85.1213985 1.93003875 -0.123971 79 99 SH7222 7222 snR64 3' 29.457757 147.952393 88.705075 1.947948467 -0.014184 79 100 SH7706 7706 snoRNA cluster1 intergenic/snR77 90.063129 348.763767 90.063129 259.700638 174.8818835 2.242744822 0.041714 79 101 SH16648 16648 YFR031C-A_6_221405_220494_INTRON_5_151 intron 35.092602 205.965536 35.092602 171.872934 103.482768 2.014868037 0.155796 79 102 SH21640 21640 copy of SH8350 29.021357 189.506818 109.2640875 2.038477443 -0.265429 79 103 SH20426 20426 YGL033W spliced 44.581109 196.170769 120.375939 2.080539688 0.065771 79 104 SH15922 15922 YDL083C_4_307788_306925_INTRON_25_456 3' exon 31.654748 203.989617 31.654748 173.334869 102.4948085 2.010701868 -0.012435 80 2 SH4546 4546 U3b (snR17b) U3b 286 298 34.636128 166.476792 100.55646 2.002409976 0.19394 80 3 SH12623 12623 MT_15S MT_15S 83.600277 344.475781 83.600277 261.875504 172.7378905 2.237387612 -0.04411 80 4 SH10029 10029 RUF6 5' - 5 -9 5 31.286906 163.101692 97.194299 1.987640792 0.02754 80 5 SH16998 16998 YGR118W_7_726968_727725_INTRON_66_385 intron 478.22555 1135.982227 478.22555 658.756677 568.4911135 2.75472368 0.271431 80 6 SH506 506 Asp2 3' flank 29.892041 154.352499 92.12227 1.964364631 -0.018118 80 7 SH18703 18703 YNL130C_14_381156_379555_INTRON_30_470 intron 30.180886 181.999411 30.180886 152.818525 91.4997055 1.961419696 0.00993 80 8 SH6115 6115 snR39B 5' 28.401448 150.638915 89.5201815 1.951920954 -0.105049 80 9 SH9726 9726 RUF4 RUF4 406 421 28.631075 140.460471 84.545773 1.927091899 -0.03357 80 10 SH9622 9622 RUF3 3' 28.831968 145.06381 86.947889 1.939259042 -0.043974 80 11 SH9867 9867 RUF5-1 RUF5-1 141 160 29.004133 159.489598 94.2468655 1.974266915 -0.107219 80 12 SH6351 6351 snR43 5' - 12 -4 12 33.360616 155.085894 94.223255 1.974158103 0.198712 80 13 SH18043 18043 YLR333C_12_796335_795573_INTRON_1_423 intron 29.277647 213.783016 29.277647 185.505369 107.391508 2.030969941 -0.227311 80 14 SH5614 5614 snR34 5' - 8 -9 8 33.631879 152.673002 93.1524405 1.969194237 0.229783 80 15 SH17718 17718 YKL081W_11_282533_284097_INTRON_206_531 intron/exon 35.872522 193.331027 35.872522 158.458505 97.1655135 1.98751215 0.312563 80 16 SH15371 15371 YBL027W_2_168385_169338_INTRON_3_386 intron 31.697448 211.083836 31.697448 180.386388 106.041918 2.025477574 -0.050429 80 17 SH13744 13744 MT COB Exon1 29.624528 212.384147 29.624528 183.759619 106.6920735 2.028132155 -0.195686 80 18 SH11269 11269 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3231 3248 31.806094 168.474865 100.1404795 2.000609667 0.025376 80 19 SH8865 8865 LSR1 / U2 RNA U2 966 982 31.82485 165.242194 98.533522 1.993584007 0.046162 80 20 SH2574 2574 Pro2 3' flank 29.677495 147.166399 88.421947 1.946560074 0.005554 80 21 SH14760 14760 MT ORF11; tRNA Leu; tRNA Gln ORF11 29.654552 179.361446 29.654552 150.706894 90.180723 1.955113713 -0.015309 80 22 SH12364 12364 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.61694 188.568723 29.61694 159.951783 94.7843615 1.976736689 -0.066172 80 23 SH10605 10605 RUF8 951 + 3' 951 31.704645 147.677513 89.691079 1.952749249 0.139869 80 24 SH4821 4821 snR5 3' 31.647375 159.028594 95.3379845 1.979265966 0.07465 80 25 SH289 289 Arg4 41-53 41 53 361.398881 535.343706 448.3712935 2.6516378 0.271047 80 26 SH13055 13055 MT COX1 COX1ai2 33.66316 238.610805 33.66316 205.947645 119.8054025 2.078476403 -0.223664 80 27 SH1841 1841 Leu9 5' flank 31.498365 195.419176 113.4587705 2.054838073 -0.190302 80 28 SH9442 9442 RUF2 RUF2 51 66 98.700619 254.476734 176.5886765 2.246962852 0.168171 80 29 SH12194 12194 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7856 7874 29.366021 123.791142 76.5785815 1.884107317 0.120253 80 30 SH4310 4310 telomerase RNA telomerase 586 603 128.262355 325.803333 227.032844 2.35608869 -0.038302 80 31 SH10352 10352 RUF7 RUF7 371 387 31.576796 162.163615 96.8702055 1.986190221 0.050642 80 32 SH8986 8986 snR17a / U3a U3a 216 230 46.598979 201.011846 123.8054125 2.092739631 0.039054 80 33 SH14039 14039 MT COB Cytbi4 29.584132 216.152583 29.584132 187.568451 108.5762915 2.035735004 -0.21908 80 34 SH1361 1361 Ile3 3' flank 29.639386 142.497435 86.0684105 1.934843783 0.028105 80 35 SH8914 8914 LSR1 / U2 RNA 3' 29.670833 181.88017 105.7755015 2.024385093 -0.182321 80 36 SH15242 15242 MT tRNA fMet 5' 29.670673 206.733403 29.670673 178.06273 103.8667015 2.01647634 -0.160779 80 37 SH4261 4261 telomerase RNA telomerase 341 360 31.775572 176.390888 104.08323 2.017380761 -0.02307 80 38 SH10725 10725 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 511 528 390.211014 547.811068 469.011041 2.671183067 0.32603 80 39 SH12900 12900 MT COX1 intronic/exon2 29.488531 170.013467 29.488531 141.524936 85.5067335 1.932000316 0.022695 80 40 SH6578 6578 snR47 5' - 12 -4 12 31.515772 141.507392 86.511582 1.937074254 0.162043 80 41 SH17737 17737 YKL156W_11_158616_159214_INTRON_4_353 intron 31.41623 189.37997 31.41623 158.96374 95.189985 1.978591258 0.061245 80 42 SH5575 5575 snR33 snR33 161 177 64.147757 235.26484 149.7062985 2.175240073 -0.063411 80 43 SH14902 14902 MT tRNA Ile 3' 29.14173 198.540668 29.14173 170.398938 99.770334 1.999001426 -0.150995 80 44 SH3940 3940 RNase MRP RNaseMRP 116 140 29.072901 149.954589 89.513745 1.951889727 -0.052365 80 45 SH2768 2768 Pro6 5' flank 29.004354 171.925701 100.4650275 2.002014907 -0.168028 80 46 SH4381 4381 telomerase RNA telomerase 941 957 28.930787 186.244038 107.5874125 2.031761463 -0.253628 80 47 SH4120 4120 SRP RNA SRP RNA 491 503 33.017024 183.754389 108.3857065 2.034972013 -0.030036 80 48 SH14069 14069 MT COB Cytbi4 30.845274 211.477985 30.845274 181.632711 106.2389925 2.026283943 -0.10837 80 49 SH20582 20582 YHR016C spliced 34.911691 183.689165 109.300428 2.038621863 0.037406 80 50 SH13189 13189 MT COX1 Exon4 30.705766 206.779008 30.705766 177.073242 103.889504 2.016571673 -0.091014 80 51 SH16060 16060 YDL219W_4_65243_65766_INTRON_66_136 intron 30.679072 178.513264 30.679072 148.834192 89.756632 1.953066548 0.065308 80 52 SH19701 19701 Negative Control 36.900155 174.423313 105.661734 2.023917734 0.191106 80 53 SH16635 16635 YFR024C-A_6_203420_201947_INTRON_48_165 exon/intron 30.746048 192.266247 30.746048 162.520199 96.6331235 1.985126018 -0.00143 80 54 SH6798 6798 snR50 3' 30.832549 170.220676 100.5266125 2.002281048 -0.043212 80 55 SH16896 16896 YGL226C-A_7_73156_72747_INTRON_22_170 intron 30.937577 170.009474 30.937577 140.071897 85.504737 1.931990175 0.131766 80 56 SH20786 20786 YKL081W spliced 31.042239 146.662642 88.8524405 1.948669361 0.101637 80 57 SH20098 20098 YDL029W spliced 31.126244 158.260025 94.6931345 1.976318493 0.045594 80 58 SH18586 18586 YNL050C_14_534978_534075_INTRON_18_108 intron 33.272285 227.784952 33.272285 195.512667 114.392476 2.05839746 -0.125475 80 59 SH11966 11966 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6716 6732 20886.79189 7434.837442 14160.81466 4.151088239 1.301101 80 60 SH1537 1537 Leu3 3' flank 33.19594 191.908865 112.5524025 2.05135477 -0.096833 80 61 SH8159 8159 snoRNA cluster 3; snR70 35.156788 204.379561 35.156788 170.222773 102.6897805 2.011527226 0.174264 80 62 SH21624 21624 copy of SH7729 30.811531 164.897981 97.854756 1.990581938 -0.01221 80 63 SH20993 20993 YML073C spliced 36.805357 200.353076 118.5792165 2.074008576 -0.100547 80 64 SH8182 8182 snoRNA cluster 3; snR70 42.705214 224.017856 42.705214 182.312642 112.508928 2.051186987 0.207233 80 65 SH2871 2871 Pro7 3' flank 32.208128 176.854562 104.531345 2.019246538 -0.000461 80 66 SH18470 18470 YMR143W_13_551927_552902_INTRON_25_568 intron 38.054876 221.532264 38.054876 184.477388 111.266132 2.046362991 0.102869 80 67 SH4351 4351 telomerase RNA telomerase 791 813 31.78986 183.857767 107.8238135 2.032714688 -0.076358 80 68 SH10515 10515 RUF8 RUF8 501 523 31.627091 154.122737 92.874914 1.967898425 0.100181 80 69 SH16453 16453 YER074W-A_0_5_307649_INTRON_95_196 intron 6547.802459 12189.49145 6547.802459 5642.688991 6095.245725 3.784991219 0.23892 80 70 SH4048 4048 SRP RNA SRP RNA 131 148 31.432944 160.760436 96.09669 1.982708429 0.050936 80 71 SH20492 20492 YGL251C spliced 41.349492 187.349363 114.3494275 2.058233995 0.125594 80 72 SH907 907 Glu3 tRNA 46 58 47.364563 188.305353 117.834958 2.071274151 0.196326 80 73 SH11614 11614 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4956 4971 2124.762315 1611.831647 1868.296981 3.271445912 0.744994 80 74 SH776 776 Gln4 3' flank 27.604832 129.895584 78.750208 1.89625171 -0.046837 80 75 SH18667 18667 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.701284 189.920401 29.701284 161.219117 95.4602005 1.979822342 -0.066664 80 76 SH2597 2597 Pro3 5' flank 31.812854 163.719072 97.765963 1.990187682 0.054866 80 77 SH10702 10702 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 396 414 33.927794 152.677908 93.302851 1.969894914 0.246126 80 78 SH5160 5160 snR13 5' 31.992421 179.451168 105.7217945 2.024164526 -0.027831 80 79 SH559 559 Cys1 3' flank 30.031915 137.762698 83.8973065 1.923748018 0.082147 80 80 SH4815 4815 snR5 3' 30.078012 164.075692 97.076852 1.987115685 -0.054734 80 81 SH5337 5337 snR30 snR30 536 555 30.114456 151.340037 90.7272465 1.957737731 0.013233 80 82 SH19927 19927 YBL018C spliced 32.176615 160.57336 96.3749875 1.983964335 0.095832 80 83 SH8621 8621 snR19 / U1 RNA U1 601 618 26.107414 145.102129 85.6047715 1.932497972 -0.253242 80 84 SH11200 11200 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2886 2904 32.223698 186.222337 109.2230175 2.038314171 -0.081684 80 85 SH5457 5457 snR32 5' 32.231808 166.604284 99.418046 1.997465223 0.061575 80 86 SH18484 18484 YMR194W_13_651144_651909_INTRON_17_479 exon/intron 32.222421 229.169952 32.222421 197.947531 115.084976 2.061018631 -0.184769 80 87 SH2236 2236 Phe1 tRNA-intron/exon 56 70 698.441828 835.445221 766.9435245 2.884763385 0.357749 80 88 SH20010 20010 YBR082C spliced 33.15182 163.138021 98.1449205 1.991867828 0.135548 80 89 SH5275 5275 snR30 snR30 226 240 30.036744 147.064507 88.5506255 1.947191633 0.031086 80 90 SH9979 9979 RUF5-1 RUF5-1 701 718 27.935312 172.334903 100.1351075 2.000586368 -0.24789 80 91 SH12266 12266 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.862652 198.020142 29.862652 169.15749 99.510071 1.997867036 -0.096596 80 92 SH15128 15128 MT tRNA Phe tRNA 33.787776 220.989051 33.787776 188.201275 110.9945255 2.045301559 -0.042743 80 93 SH16348 16348 YDR500C_4_1450856_1450201_INTRON_8_396 intron 50.75668 278.329715 50.75668 228.573035 139.6648575 2.145087143 -0.187298 80 94 SH1463 1463 Leu2 tRNA 86 102 53.633172 205.019562 129.326367 2.111687078 0.088922 80 95 SH19430 19430 YPR132W_16_794960_795762_INTRON_66_430 intron 27.544258 193.649612 27.544258 167.105354 97.324806 1.988223547 -0.252184 80 96 SH5576 5576 snR33 snR33 166 182 199.595801 433.938366 316.7670835 2.500740046 -0.07425 80 97 SH1996 1996 Lys3 5' flank 31.350568 160.409462 95.880015 1.981728093 0.048251 80 98 SH13035 13035 MT COX1 COX1ai2 29.270789 216.485559 29.270789 188.21477 108.7427795 2.03640043 -0.24248 80 99 SH10454 10454 RUF8 RUF8 196 215 31.122829 189.155003 110.138916 2.041940798 -0.149692 80 100 SH4266 4266 telomerase RNA telomerase 366 383 29.025271 175.202174 102.1137225 2.009084108 -0.185437 80 101 SH18148 18148 YLR406C_12_931752_931062_INTRON_58_406 intron 28.883715 170.995177 28.883715 143.111462 85.9975885 1.934486273 -0.029638 80 102 SH7431 7431 snR69 snR69 56 73 61.985031 196.845375 129.415203 2.111985298 0.282141 80 103 SH9699 9699 RUF4 RUF4 271 290 29.555495 168.146713 98.851104 1.994981524 -0.110958 80 104 SH13123 13123 MT COX1 COX1ai3 28.439426 203.917587 28.439426 176.478161 102.4587935 2.010549238 -0.230927 81 2 SH19770 19770 Negative Control 46.335892 210.122801 128.2293465 2.107987429 -0.064279 81 3 SH12832 12832 MT COX1 COX1ai1 34.892462 193.179451 34.892462 159.286989 97.0897255 1.987173273 0.255482 81 4 SH6070 6070 snR37 snR37 266 285 27.317112 148.089058 87.703085 1.94301487 -0.173728 81 5 SH13210 13210 MT COX1 COX1-ai4 29.610109 196.14245 29.610109 167.532341 98.571225 1.993750154 -0.104161 81 6 SH7901 7901 snoRNA cluster1 intergenic 29.925646 183.220789 29.925646 154.295143 92.1103945 1.964308642 -0.015486 81 7 SH3261 3261 Thr2 5' flank 28.193684 142.711095 85.4523895 1.931724211 -0.07838 81 8 SH5680 5680 snR34 snR34 321 336 145.585959 324.127922 234.8569405 2.370803399 0.102907 81 9 SH9373 9373 RUF1 RUF1 441 457 51.543255 207.201745 129.3725 2.111841971 0.038326 81 10 SH13565 13565 MT COX1 Exon 6 28.890156 200.522954 28.890156 172.632798 100.761477 2.003294525 -0.17954 81 11 SH20680 20680 YIL111W spliced 31.153404 183.298639 107.2260215 2.030300192 -0.099065 81 12 SH15629 15629 YBR181C_2_592732_591670_INTRON_7_358 intron 29.194016 194.438005 29.194016 166.243989 97.7190025 1.989979025 -0.127277 81 13 SH15144 15144 MT tRNA Thr1 reverse complement 5' / tRNA 29.310461 190.062389 29.310461 161.751928 95.5311945 1.980145208 -0.096826 81 14 SH18994 18994 YOR122C_15_552886_552297_INTRON_14_222 intron 29.410638 203.216549 29.410638 174.805911 102.1082745 2.009060937 -0.15848 81 15 SH20907 20907 YLR316C spliced 30.560847 191.920461 111.240654 2.046263533 -0.196013 81 16 SH21679 21679 copy of SH10029 33.836424 154.843711 94.3400675 1.974696183 0.226774 81 17 SH17210 17210 YHR039C-A_8_187670_187164_INTRON_4_165 intron 31.75428 176.972443 31.75428 146.218163 88.9862215 1.949322766 0.151161 81 18 SH13266 13266 MT COX1 COX1-ai4 29.642551 217.724959 29.642551 189.082408 109.3624795 2.038868348 -0.22356 81 19 SH14022 14022 MT COB Exon4 29.643655 182.345298 29.643655 153.701643 91.672649 1.962239781 -0.032012 81 20 SH9569 9569 RUF3 RUF3 231 250 48.91912 191.379161 120.1491405 2.079720668 0.180419 81 21 SH5483 5483 snR32 snR32 76 92 34.920486 171.030503 102.9754945 2.012733886 0.158197 81 22 SH20279 20279 YDR450W spliced 29.520429 145.002495 87.261462 1.940822485 0.006054 81 23 SH6514 6514 snR46 snR46 61 77 33.712091 179.490687 106.601389 2.027762864 0.034537 81 24 SH17135 17135 YHR010W_8_126513_127484_INTRON_32_592 intron 31.51288 217.211011 31.51288 186.698131 109.1055055 2.037846666 -0.112711 81 25 SH21367 21367 Leu1_5 spliced 31.448676 177.886491 104.6675835 2.019812198 -0.050979 81 26 SH8207 8207 snoRNA cluster 3; snR51 31.397491 164.678486 31.397491 134.280995 82.839243 1.918236122 0.195748 81 27 SH20942 20942 YLR426W spliced 31.3661 155.943467 93.6547835 1.971529964 0.07347 81 28 SH20515 20515 YGR029W spliced 31.360254 178.955243 105.1577485 2.021841279 -0.062329 81 29 SH17941 17941 YLR093C_12_327416_326514_INTRON_17_157 3' exon 29.269817 197.868528 29.269817 169.598711 99.434264 1.997536063 -0.13808 81 30 SH15972 15972 YDL136W_4_217600_218367_INTRON_4_408 5' exon 44.162537 235.315277 44.162537 192.15274 118.1576385 2.072461803 0.107242 81 31 SH16684 16684 YGL030W_7_439087_439634_INTRON_4_233 intron 31.507982 150.865479 31.507982 120.357497 75.9327395 1.880429069 0.288455 81 32 SH18559 18559 YMR292W_13_854795_855293_INTRON_23_104 intron 29.466418 174.570814 29.466418 146.104396 87.785407 1.943422327 -0.003702 81 33 SH4627 4627 snR3 snR3 51 70 29.544178 156.410367 92.9772725 1.968376802 -0.05314 81 34 SH195 195 Arg2 3' flank 28.537803 143.492605 86.015204 1.934575224 -0.057086 81 35 SH13038 13038 MT COX1 COX1ai2 29.638144 177.582106 29.638144 148.943962 89.291053 1.950807945 -0.006926 81 36 SH248 248 Arg3 3' flank 29.633667 175.270918 102.4522925 2.010521681 -0.147056 81 37 SH8227 8227 snoRNA cluster 3; snR51/3' 31.725649 219.834786 31.725649 189.109137 110.417393 2.043037489 -0.126302 81 38 SH21439 21439 TH297 - control oligo; WTP_221 35.906404 198.737081 117.3217425 2.069378505 -0.100404 81 39 SH10215 10215 RUF6 RUF6 921 938 31.535082 193.165368 112.350225 2.050573947 -0.169331 81 40 SH10796 10796 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 866 886 31.416899 126.361144 78.8890215 1.897016569 0.244424 81 41 SH20884 20884 YLR211C spliced 31.301556 146.937588 89.119572 1.949973092 0.117384 81 42 SH6509 6509 snR46 snR46 36 51 38.557266 151.608428 95.082847 1.978102177 0.480285 81 43 SH19672 19672 SIR1 2.4 29.012998 153.133649 91.0733235 1.959391185 -0.07364 81 44 SH11297 11297 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3371 3389 28.936333 132.08716 80.5117465 1.905859248 0.036665 81 45 SH8475 8475 snoRNA cluster 5 3' 28.860619 164.828326 28.860619 136.967707 82.914163 1.918628721 0.002872 81 46 SH18827 18827 YNL302C_14_62942_61957_INTRON_21_571 intron 32.935157 224.483952 32.935157 192.548795 112.741976 2.052085642 -0.111898 81 47 SH9513 9513 RUF3 5' 30.762356 169.506571 100.1344635 2.000583575 -0.043201 81 48 SH21537 21537 copy of SH3943 30.665602 137.963186 84.314394 1.925901723 0.124991 81 49 SH6967 6967 snR60 5' 32.637719 179.20208 105.9198995 2.02497756 -0.001547 81 50 SH297 297 Arg4 3' flank 28.459169 126.690065 77.574617 1.88971964 0.036557 81 51 SH8032 8032 snoRNA cluster 2 snR55 51.077116 265.434455 51.077116 215.357339 133.2172275 2.124560391 -0.05277 81 52 SH11592 11592 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4846 4859 67.656468 218.139836 142.898152 2.155026612 0.136454 81 53 SH12653 12653 MT_15S MT_15S 32.627012 163.024092 32.627012 131.39708 82.012046 1.913877647 0.293567 81 54 SH16349 16349 YDR500C_4_1450856_1450201_INTRON_8_396 intron 43.086515 255.237367 43.086515 213.150852 128.1186835 2.107612467 -0.142674 81 55 SH6853 6853 snR52 3' 30.790633 161.525733 96.158183 1.982986248 0.00655 81 56 SH2265 2265 Phe2 5' flank 32.997307 177.384165 105.190736 2.021977494 0.028785 81 57 SH11606 11606 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4916 4931 32743.91058 29777.31957 31260.61508 4.494997519 -0.321738 81 58 SH5537 5537 snR33 5' 33.170473 134.727414 83.9489435 1.924015235 0.308014 81 59 SH16331 16331 YDR471W_4_1401759_1402553_INTRON_32_415 intron 37.369131 237.64868 37.369131 201.279549 119.32434 2.076729041 -0.09984 81 60 SH16227 16227 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 31.021427 208.790478 31.021427 178.769051 104.895239 2.020755777 -0.081578 81 61 SH21566 21566 copy of SH5226 30.9016 181.145352 106.023476 2.025402039 -0.10223 81 62 SH14970 14970 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 34.874096 200.321029 34.874096 166.446933 100.6605145 2.002859146 0.202445 81 63 SH14808 14808 "MT tRNAs (Lys, Arg1, Gly)" intergenic 30.520252 180.250653 30.520252 150.730401 90.6253265 1.957249584 0.044281 81 64 SH17590 17590 YJL191W_10_73786_74610_INTRON_11_418 intron 30.290099 196.968577 30.290099 167.678478 98.9842885 1.995566266 -0.061105 81 65 SH7717 7717 snoRNA cluster1 snR77 32.082213 175.638425 32.082213 144.556212 88.3192125 1.946055188 0.181743 81 66 SH17855 17855 YKR095W-A_11_625432_625839_INTRON_39_113 intron 31.844518 199.807629 31.844518 168.963111 100.4038145 2.001750213 0.024693 81 67 SH11576 11576 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4766 4783 43.645229 167.782298 105.7137635 2.024131534 0.406435 81 68 SH1315 1315 Ile3 5' flank 31.457258 175.254846 103.356052 2.014335912 -0.035326 81 69 SH19976 19976 YBL087C spliced 41.240149 178.294634 109.7673915 2.040473344 0.233982 81 70 SH4526 4526 U3b (snR17b) U3b 186 202 138.774344 334.381001 236.5776725 2.373973755 -0.004603 81 71 SH6652 6652 snR48 snR48 86 107 31.224379 156.311626 93.7680025 1.972054665 0.062162 81 72 SH4796 4796 snR5 snR5 151 173 29.274877 183.433643 106.35426 2.02675489 -0.216077 81 73 SH10941 10941 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1591 1607 188.99898 326.477921 257.7384505 2.411179213 0.368832 81 74 SH20726 20726 YJL177W spliced 37.362694 193.380026 115.37136 2.062098012 -0.012764 81 75 SH6007 6007 snR37 5' 27.524289 124.138814 75.8315515 1.879849942 -0.015279 81 76 SH5026 5026 snR10 snR10 161 178 27.605747 97.705506 62.6556265 1.796960077 0.190886 81 77 SH6866 6866 snR56 5' 33.673257 138.660751 86.167004 1.935340993 0.315923 81 78 SH1281 1281 Ile2 tRNA 101 113 35.737357 187.724436 111.7308965 2.048173283 0.020415 81 79 SH16356 16356 YDR500C_4_1450856_1450201_INTRON_8_396 intron 37.785463 243.196561 37.785463 206.411098 122.0982805 2.086709548 -0.149929 81 80 SH16198 16198 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 29.773966 176.985394 29.773966 148.211428 88.992697 1.949354369 0.006557 81 81 SH14581 14581 MT 21S rRNA intronic 35.812288 230.075488 35.812288 195.2632 115.537744 2.062723883 -0.063855 81 82 SH10661 10661 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 191 208 93.475183 277.681236 185.5782095 2.26852698 -0.052336 81 83 SH5454 5454 snR32 5' 29.806572 169.232662 99.519617 1.997908696 -0.100561 81 84 SH9346 9346 RUF1 RUF1 306 322 31.827129 136.749545 84.288337 1.925767485 0.21015 81 85 SH1076 1076 Gly3 3' flank 27.815002 124.675243 76.2451225 1.882212067 0.002756 81 86 SH13042 13042 MT COX1 COX1ai2 27.811668 168.602843 27.811668 141.791175 84.8014215 1.928403132 -0.102072 81 87 SH21913 21913 copy of SH19566 33.820393 150.732764 92.2765785 1.965091483 0.253226 81 88 SH21478 21478 copy of SH1445 249.338077 465.12698 357.2325285 2.552950998 0.062578 81 89 SH7889 7889 snoRNA cluster1 intergenic 29.707996 207.934041 29.707996 179.226045 104.4670205 2.018979208 -0.165046 81 90 SH1343 1343 Ile3 tRNA-intron/exon 96 108 37.635157 164.245822 100.9404895 2.004065406 0.316185 81 91 SH17294 17294 YHR141C_8_382752_381991_INTRON_5_445 intron 27.565306 180.439066 27.565306 153.87376 90.719533 1.957700806 -0.184541 81 92 SH21468 21468 copy of SH1004 31.457547 127.859414 79.6584805 1.901232018 0.237961 81 93 SH19562 19562 CBP1 2.2 27.407813 132.419773 79.913793 1.902621744 -0.077518 81 94 SH11220 11220 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2986 3009 29.306142 142.193149 85.7496455 1.933232333 0.005957 81 95 SH4995 4995 snR10 snR10 6 23 37.115859 179.234364 108.1751115 2.034127352 0.147987 81 96 SH20220 20220 YDR092W spliced 38.985827 188.218176 113.6020015 2.055385983 0.076247 81 97 SH12168 12168 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7726 7743 27.104363 144.207471 85.655917 1.932757369 -0.169496 81 98 SH13776 13776 MT COB intronic 27.014383 167.816764 27.014383 141.802381 84.408382 1.926385575 -0.163392 81 99 SH6822 6822 snR52 snR52 16 32 177.300021 391.737486 284.5187535 2.454110897 -0.026876 81 100 SH3423 3423 Trp1 5' flank 40.396796 180.626037 110.5114165 2.043407146 0.19107 81 101 SH11824 11824 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6006 6019 33.435773 160.482469 96.959121 1.98658867 0.168166 81 102 SH6631 6631 snR48 5' 50.698007 171.806585 111.252296 2.046308983 0.445853 81 103 SH7344 7344 snR68 5' 28.313315 114.638599 71.475957 1.854159979 0.108925 81 104 SH6445 6445 snR45 snR45 71 87 32.960076 144.132699 88.5463875 1.947170848 0.240143 82 2 SH1984 1984 Lys2 3' flank 30.646193 185.563705 108.104949 2.033845576 -0.142229 82 3 SH7543 7543 snR79 snR79 56 73 30.956974 170.627207 100.7920905 2.003426453 -0.038107 82 4 SH6662 6662 snR48 3' 83.231806 277.630713 180.4312595 2.256311781 -0.162456 82 5 SH14507 14507 MT 21S rRNA 21S rRNA3 29.632987 186.903151 29.632987 158.270164 93.9515755 1.972904067 -0.056486 82 6 SH710 710 Gln3 3' flank 27.938073 141.402259 84.670166 1.927730411 -0.090381 82 7 SH17052 17052 YGR214W_7_920570_921783_INTRON_91_545 intron 32.308823 246.653337 32.308823 215.344514 123.8266685 2.092814189 -0.349887 82 8 SH12542 12542 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.493368 184.026159 28.493368 156.532791 92.5130795 1.966203138 -0.128931 82 9 SH21716 21716 copy of SH11501 30.796947 177.940195 104.368571 2.018569737 -0.090433 82 10 SH15857 15857 YDL079C_4_314747_312950_INTRON_413_704 intron 26.828827 167.148207 26.828827 141.31938 84.0741035 1.924662245 -0.175249 82 11 SH14602 14602 MT 21S rRNA Sce1 endonuc 29.069629 185.20707 29.069629 157.137441 93.103535 1.968966171 -0.090502 82 12 SH2445 2445 Phe5 5' flank - tRNA12 12 35.521394 193.932642 114.727018 2.059665705 -0.054733 82 13 SH4774 4774 snR5 snR5 41 53 69.669052 204.24869 136.958871 2.136590167 0.296559 82 14 SH1830 1830 Leu8 3' flank 31.509702 188.626034 110.067868 2.041660554 -0.130168 82 15 SH6559 6559 snR47 5' 31.591398 172.337056 101.964227 2.008447831 -0.010314 82 16 SH19148 19148 YPL075W_16_412249_415357_INTRON_9_759 intron 171.047476 512.314302 171.047476 342.266826 256.657151 2.409353369 0.175387 82 17 SH8411 8411 snoRNA cluster 5 snR190 29.567043 168.926204 29.567043 140.359161 84.963102 1.92923036 0.034741 82 18 SH2221 2221 Phe1 5' flank 31.720407 157.18429 94.4523485 1.975212761 0.090361 82 19 SH15392 15392 YBL040C_2_142830_142074_INTRON_23_119 intron 33.847633 198.734642 33.847633 165.887009 99.867321 1.9994234 0.1574 82 20 SH9223 9223 snR6 / U6 RNA 5' - 3 -14 3 31.673472 138.570355 85.1219135 1.930041378 0.189392 82 21 SH10974 10974 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1756 1769 50235.95322 38449.25696 44342.60509 4.646821204 -0.171545 82 22 SH5976 5976 snR36 snR36 336 354 1696.996001 2455.661104 2076.328553 3.317296076 -0.210768 82 23 SH11266 11266 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3216 3234 31.464628 167.2312 99.347914 1.997158753 0.012726 82 24 SH21250 21250 YPL031C spliced 32.449442 182.591566 107.520504 2.031491291 -0.040096 82 25 SH12928 12928 MT COX1 COX1ai2 31.33087 197.571279 31.33087 167.240409 99.2856395 1.996886437 0.004706 82 26 SH14159 14159 MT COB intronic 33.398685 225.729666 33.398685 193.330981 113.364833 2.054478353 -0.101997 82 27 SH1035 1035 Gly3 5' flank 29.166934 129.227987 79.1974605 1.898711256 0.070641 82 28 SH2286 2286 Phe2 tRNA-exon/intron 26 42 43.956499 209.546836 126.7516675 2.102953681 -0.091603 82 29 SH17400 17400 YIL069C_9_232366_231550_INTRON_4_412 intron 31.328005 206.844913 31.328005 176.516908 103.9224565 2.016709404 -0.050313 82 30 SH10878 10878 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1276 1289 11884.25199 9810.905428 10847.57871 4.03533281 0.130037 82 31 SH1788 1788 Leu8 5' flank 31.484335 163.961997 97.723166 1.989997529 0.033955 82 32 SH17482 17482 YJL024C_10_396288_395627_INTRON_23_99 5' exon 44.362474 231.726837 44.362474 188.364363 116.3634185 2.065816471 0.155457 82 33 SH10049 10049 RUF6 RUF6 91 110 33.799189 173.903023 103.851106 2.016411126 0.090994 82 34 SH1977 1977 Lys2 3' flank 63.903082 253.649178 158.77613 2.200785212 -0.219734 82 35 SH8307 8307 snoRNA cluster4 intergenic 29.620673 192.466274 29.620673 163.845601 96.733137 1.985575272 -0.085395 82 36 SH5303 5303 snR30 snR30 366 378 33.88018 182.891238 108.385709 2.034972023 0.008824 82 37 SH19018 19018 YOR182C_15_678792_678190_INTRON_4_414 intron 29.54912 177.418692 29.54912 148.869572 89.209346 1.950410356 -0.012764 82 38 SH12548 12548 MT_ORF6 + ORF7 (hypothetical) 3' 29.456742 168.474157 29.456742 140.017415 84.7370785 1.928073487 0.028769 82 39 SH6819 6819 snR52 snR52 1 20 150.042827 371.077385 260.560106 2.415907922 -0.111827 82 40 SH148 148 Arg1 3' flank 33.434416 205.291466 119.362941 2.076869511 -0.221537 82 41 SH20444 20444 YGL103W spliced 58.594417 215.460445 137.027431 2.136807516 0.047301 82 42 SH1754 1754 Leu7 tRNA 66 80 72.082253 203.471259 137.776756 2.139175955 0.332217 82 43 SH4613 4613 snR3 5' 30.983649 176.011516 103.4975825 2.014930206 -0.068062 82 44 SH1618 1618 Leu5 5' flank 28.815245 154.822037 91.818641 1.962930861 -0.096717 82 45 SH20964 20964 YML026C spliced 30.806766 144.555329 87.6810475 1.94290573 0.097558 82 46 SH5862 5862 snR35 snR35 496 513 32.781006 163.660565 98.2207855 1.992203403 0.111271 82 47 SH21211 21211 YOR096W spliced 32.671189 189.72667 111.1989295 2.046100606 -0.096622 82 48 SH11933 11933 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6551 6566 106.862857 276.633325 191.748091 2.282731049 0.084907 82 49 SH9049 9049 snR17a / U3a 3' 30.407678 140.288036 85.347857 1.931192621 0.094179 82 50 SH20856 20856 YLR078C spliced 2174.352707 1586.136993 1880.24485 3.274214408 0.800577 82 51 SH16376 16376 YER003C_5_159117_157735_INTRON_32_124 intron/exon 36.437948 230.312664 36.437948 194.874716 115.656332 2.063169415 -0.047264 82 52 SH9823 9823 RUF5-1 5' 40.55818 202.912129 121.7351545 2.085416011 -0.06836 82 53 SH4607 4607 snR3 5' 28.351838 126.051459 77.2016485 1.887626574 0.032974 82 54 SH13967 13967 MT COB Cytbi3 30.510485 180.307402 30.510485 150.796917 90.653701 1.957385539 0.043259 82 55 SH803 803 Glu1 tRNA 31 43 38.915792 180.771065 109.8434285 2.04077408 0.162897 82 56 SH19951 19951 YBL050W spliced 244.441128 460.205795 352.3234615 2.546941564 0.057611 82 57 SH12360 12360 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.067587 228.315506 35.067587 194.247919 114.657753 2.059403426 -0.067368 82 58 SH19259 19259 YPL143W_16_282121_282969_INTRON_20_544 intron 161.195335 506.369489 161.195335 346.174154 253.6847445 2.404294351 0.091014 82 59 SH15838 15838 YDL075W_4_322225_322987_INTRON_58_478 intron 35.165738 222.466287 35.165738 188.300549 111.7331435 2.048182017 0.002333 82 60 SH15063 15063 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 33.018746 210.829986 33.018746 178.81124 105.914993 2.024957442 0.016042 82 61 SH2427 2427 Phe5 5' flank 30.814771 159.064138 94.9394545 1.977446732 0.020617 82 62 SH5153 5153 snR13 5' 427.323403 669.626937 548.47517 2.739156971 0.105055 82 63 SH15146 15146 MT tRNA Thr1 reverse complement tRNA 32.474463 190.604247 32.474463 159.129784 95.8021235 1.981375136 0.122232 82 64 SH14227 14227 MT ATP9 ATP9 30.183688 165.902871 30.183688 136.719183 83.4514355 1.921433812 0.09869 82 65 SH8451 8451 snoRNA cluster 5 snR128 82.7256 323.19301 82.7256 241.46741 162.096505 2.209773651 0.10509 82 66 SH15782 15782 YDL029W_4_399336_400634_INTRON_23_145 5' exon 31.705683 223.987686 31.705683 193.282003 112.493843 2.051128753 -0.163887 82 67 SH5922 5922 snR36 snR36 66 78 33.470848 197.511907 115.4913775 2.062549561 -0.13663 82 68 SH4904 4904 snR9 5' 33.273108 140.616367 86.9447375 1.939243301 0.279768 82 69 SH11608 11608 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4926 4939 24936.14805 6182.045072 15559.09656 4.191984376 1.824053 82 70 SH8161 8161 snoRNA cluster 3; snR70 97.177459 355.818853 97.177459 259.641394 178.4094265 2.251417797 0.114518 82 71 SH15326 15326 YAL003W_1_142172_143158_INTRON_81_446 intron 50.71083 264.591634 50.71083 214.880804 132.795817 2.123184395 -0.05285 82 72 SH12892 12892 MT COX1 COX1ai1 31.058019 237.410995 31.058019 207.352976 119.2054975 2.076296285 -0.307192 82 73 SH10874 10874 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1256 1273 3612.139362 2133.738716 2872.939039 3.458326411 1.005939 82 74 SH2697 2697 Pro4 3' flank 31.192213 187.402544 109.2973785 2.038609746 -0.131318 82 75 SH21163 21163 YNL302C spliced 35.230106 176.524472 105.877289 2.024802813 0.115418 82 76 SH14391 14391 MT 21S rRNA 5' / 21S rRNA3 27.388933 173.153799 27.388933 146.764866 87.0768995 1.939902957 -0.161198 82 77 SH11495 11495 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4361 4379 177.720005 327.82522 252.7726125 2.402730017 0.294567 82 78 SH10040 10040 RUF6 RUF6 46 62 111.04443 269.651076 190.347753 2.279547754 0.171146 82 79 SH7310 7310 snR66 snR66 41 60 29.445257 155.191347 92.318302 1.965287808 -0.053762 82 80 SH7276 7276 snR65 3' 31.421018 164.353385 97.8872015 1.990725913 0.027769 82 81 SH18179 18179 YLR448W_12_1028848_1029762_INTRON_16_399 intron 35.376988 259.347724 35.376988 224.970736 130.173862 2.11452379 -0.386217 82 82 SH3436 3436 Trp1 tRNA 11 27 45.304765 186.784165 116.044465 2.064624431 0.187323 82 83 SH14285 14285 MT VAR1 includes 5’ processing site VAR1 29.408792 211.717099 29.408792 183.308307 106.3585495 2.026772406 -0.206851 82 84 SH6111 6111 snR37 3' 37.347845 190.415765 113.881805 2.056454342 0.020598 82 85 SH21427 21427 Tyr1_2 spliced 89.354017 265.922289 177.638153 2.249536249 -0.011587 82 86 SH2886 2886 Pro8 5' flank 27.439209 146.337227 86.888218 1.93896089 -0.155062 82 87 SH13560 13560 MT COX1 Exon 6 27.43506 165.679138 27.43506 139.244078 83.339569 1.92085125 -0.11666 82 88 SH19569 19569 AEP2/ATP13 0.6 29.398699 175.045008 102.2218535 2.009543751 -0.160628 82 89 SH13581 13581 MT COX1 Exon 6 31.344258 190.996931 31.344258 160.652673 95.9984655 1.982264291 0.046335 82 90 SH17995 17995 YLR287C-A_12_713158_712537_INTRON_4_433 intron 32.27968 252.643686 32.27968 221.364006 126.821843 2.10319406 -0.410569 82 91 SH1464 1464 Leu2 tRNA 91 108 29.252389 178.69367 103.9730295 2.016920698 -0.190914 82 92 SH8608 8608 snR19 / U1 RNA U1 536 552 94.485731 216.291455 155.388593 2.191419134 0.443922 82 93 SH11119 11119 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2481 2497 31.064132 161.605034 96.334583 1.983782222 0.023548 82 94 SH41 41 Ala1 3' flank 58.477554 194.10302 126.290287 2.10136995 0.268635 82 95 SH17548 17548 YJL177W_10_90783_91654_INTRON_310_626 intron/exon 149.776177 434.499483 149.776177 285.723306 217.7497415 2.337957648 0.365066 82 96 SH2302 2302 Phe2 3' flank 81.7256 210.856761 146.2911805 2.165218144 0.36566 82 97 SH21438 21438 TH298 - control oligo; WTP_220 34.602917 180.85906 107.7309885 2.032340645 0.052965 82 98 SH14377 14377 MT ORF9 and ORF10 (hypothetical) ORF10 28.684644 174.38539 28.684644 146.700746 87.692695 1.942963417 -0.063508 82 99 SH12433 12433 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.5454 178.554619 29.5454 150.009219 89.7773095 1.953166586 -0.019203 82 100 SH15293 15293 MT 9S rRNA 9S 28.466396 187.28303 28.466396 159.816634 94.141515 1.973781183 -0.147716 82 101 SH19658 19658 SIR1 2.2 30.256537 162.634401 96.445469 1.984281829 -0.035306 82 102 SH17749 17749 YKL157W_11_154993_158183_INTRON_282_664 intron 33.93992 225.069197 33.93992 192.129277 113.0345985 2.053211396 -0.072218 82 103 SH5052 5052 snR10 3' 47.180645 184.989136 116.0848905 2.064775696 0.23383 82 104 SH2001 2001 Lys3 5' flank 27.926196 151.069398 89.497797 1.951812345 -0.142813 83 2 SH4609 4609 snR3 5' 28.724083 139.728346 84.2262145 1.925447282 -0.022666 83 3 SH9270 9270 RUF1 5' 29.023971 179.177352 104.1006615 2.017453489 -0.208315 83 4 SH20842 20842 YLL050C spliced 57.242985 180.587204 118.9150945 2.075236985 0.412597 83 5 SH12509 12509 MT_ORF6 + ORF7 (hypothetical) 5' 29.667682 192.26659 29.667682 163.598908 96.633295 1.985126788 -0.080884 83 6 SH2317 2317 Phe3 5' flank 40.121649 160.735209 100.428429 2.001856669 0.429284 83 7 SH8457 8457 snoRNA cluster 5 snR128 34.383719 184.247784 34.383719 150.864065 92.623892 1.966723026 0.283223 83 8 SH19031 19031 YOR234C_15_779404_778554_INTRON_20_546 5' exon 34.694109 243.270589 34.694109 209.57648 122.1352945 2.086841184 -0.240362 83 9 SH6349 6349 snR43 5' - 2 -14 2 30.805997 198.514919 114.660458 2.059413672 -0.24345 83 10 SH17369 17369 YIL052C_9_257061_256224_INTRON_38_509 intron 28.909338 209.90092 28.909338 181.991582 105.45046 2.023048479 -0.231547 83 11 SH16951 16951 YGR027C_7_534779_534126_INTRON_1_312 3' exon 37.445046 239.425165 37.445046 202.980119 120.2125825 2.079949927 -0.117055 83 12 SH8442 8442 snoRNA cluster 5 snR128 35.477886 177.619649 35.477886 143.141763 89.3098245 1.950899236 0.395168 83 13 SH16261 16261 YDR424C_4_1319830_1319376_INTRON_26_121 intron 29.248952 173.060131 29.248952 144.811179 87.0300655 1.93966931 -0.012375 83 14 SH12634 12634 MT_15S MT_15S 29.325941 172.526021 29.325941 144.20008 86.7630105 1.938334613 -0.003543 83 15 SH15372 15372 YBL027W_2_168385_169338_INTRON_3_386 intron 31.514865 225.278062 31.514865 194.763197 113.139031 2.053612455 -0.184 83 16 SH12803 12803 MT COX1 COX1ai1 31.573663 225.279249 31.573663 194.705586 113.1396245 2.053614733 -0.181268 83 17 SH7685 7685 snoRNA cluster1 intergenic 29.484741 216.653302 29.484741 188.168561 108.826651 2.036735265 -0.228617 83 18 SH6607 6607 snR47 3' 29.498869 156.389654 92.9442615 1.968222581 -0.056218 83 19 SH10212 10212 RUF6 RUF6 906 920 33.747313 181.707095 107.727204 2.032325388 0.015078 83 20 SH16816 16816 YGL178W_7_167356_170575_INTRON_4_643 intron 33.705382 202.29232 33.705382 169.586938 101.64616 2.007090976 0.127115 83 21 SH15187 15187 MT COX3 cox3 31.516461 177.271172 31.516461 146.754711 89.135586 1.950051124 0.132592 83 22 SH4779 4779 snR5 snR5 66 81 35.684799 183.007955 109.346377 2.038804398 0.069914 83 23 SH7683 7683 snoRNA cluster1 intergenic 41.957229 233.232112 41.957229 192.274883 117.116056 2.068616439 0.075046 83 24 SH5772 5772 snR35 snR35 46 63 31.304527 153.905132 92.6048295 1.966633636 0.080051 83 25 SH11366 11366 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3716 3733 24990.35013 19783.31061 22386.83037 4.349992608 -0.022763 83 26 SH19611 19611 RNA14 1.1 35.444354 159.172385 97.3083695 1.988150196 0.285549 83 27 SH20922 20922 YLR367W spliced 31.236529 182.224638 106.7305835 2.028288884 -0.088113 83 28 SH6664 6664 snR48 3' 92.776372 267.797148 180.28676 2.255963834 0.010603 83 29 SH20382 20382 YFL034C-A spliced 33.443506 177.6562 105.549853 2.023457633 0.04229 83 30 SH16850 16850 YGL183C_7_157071_156547_INTRON_4_86 exon/intron 33.53302 180.716925 33.53302 148.183905 90.8584625 1.958365383 0.253453 83 31 SH7885 7885 snoRNA cluster1 snR73/intergenic 33.636325 202.587331 33.636325 169.951006 101.7936655 2.007720753 0.121102 83 32 SH8999 8999 snR17a / U3a U3a 281 300 29.482341 149.491624 89.4869825 1.951759864 -0.020838 83 33 SH21524 21524 copy of SH3559 53.094348 192.65178 122.873064 2.089456688 0.218735 83 34 SH7844 7844 snoRNA cluster1 snR74 55.331634 264.775254 55.331634 210.44362 132.887627 2.123484546 0.053925 83 35 SH15452 15452 YBL087C_2_60732_59815_INTRON_43_546 intron 28.55451 186.290014 28.55451 158.735504 93.645007 1.971484626 -0.135803 83 36 SH8075 8075 snoRNA cluster 2 snR61 36.002035 235.02999 36.002035 200.027955 118.014995 2.071937192 -0.112622 83 37 SH8702 8702 LSR1 / U2 RNA U2 151 169 31.647995 148.089197 89.868596 1.953607957 0.133902 83 38 SH20831 20831 YKR094C spliced 31.531401 132.407862 81.9696315 1.913652983 0.215659 83 39 SH19942 19942 YBL040C spliced 30.335223 162.272538 96.3038805 1.983643787 -0.028111 83 40 SH15276 15276 MT 9S rRNA 9S 29.142915 212.694611 29.142915 184.551696 106.8473055 2.028763574 -0.230696 83 41 SH1682 1682 Leu6 5' flank 31.108158 183.299063 107.2036105 2.030209412 -0.101784 83 42 SH5037 5037 snR10 snR10 216 230 81.332837 270.954344 176.1435905 2.245866845 -0.136347 83 43 SH4003 4003 SRP RNA 5' 32.963087 186.848507 109.905797 2.0410206 -0.060172 83 44 SH2570 2570 Pro2 tRNA 86 100 37.014413 173.063851 105.039132 2.021351124 0.208014 83 45 SH8271 8271 snoRNA cluster4 snR67 36.902506 221.736816 36.902506 185.83431 111.368408 2.046762012 0.065153 83 46 SH1096 1096 Gly4 5' flank 30.595155 186.42261 108.5088825 2.035465291 -0.150036 83 47 SH282 282 Arg4 6-22 6 22 44.883829 192.163279 118.523554 2.073804666 0.116839 83 48 SH20458 20458 YGL178W spliced 30.37111 149.214893 89.7930015 1.953242489 0.042301 83 49 SH6936 6936 snR58 snR58 41 58 73.293496 215.939562 144.616529 2.160217934 0.224327 83 50 SH19662 19662 SIR1 2.2 36.298905 168.159221 102.229063 2.00957438 0.233143 83 51 SH15402 15402 YBL050W_2_125087_126081_INTRON_31_146 intron 32.192851 187.510234 32.192851 156.317383 94.255117 1.974304937 0.124067 83 52 SH2425 2425 Phe4 3' flank 32.215439 155.535215 93.875327 1.972551463 0.130475 83 53 SH10326 10326 RUF7 RUF7 241 255 36.376658 175.375434 105.876046 2.024797714 0.164804 83 54 SH2079 2079 Lys4 tRNA 61 75 121.623267 307.570285 214.596776 2.331623193 0.014463 83 55 SH468 468 Asp2 5' flank 30.51959 176.944529 103.7320595 2.015913 -0.101644 83 56 SH2459 2459 Phe5 tRNA 66 80 38.94284 169.966515 104.4546775 2.018927893 0.297613 83 57 SH859 859 Glu2 61-72 + 3' flank 61 34.944563 176.508013 105.726288 2.024182985 0.105827 83 58 SH10132 10132 RUF6 RUF6 506 520 39.204792 179.542456 109.373624 2.038912602 0.182985 83 59 SH20666 20666 YIL069C spliced 32.973946 207.720039 120.3469925 2.080435242 -0.256962 83 60 SH14788 14788 "MT tRNAs (Lys, Arg1, Gly)" 5' 28.763822 169.057142 28.763822 141.29332 85.028571 1.92956488 -0.028435 83 61 SH21017 21017 YMR033W spliced 30.723438 145.853418 88.288428 1.945903784 0.084695 83 62 SH11358 11358 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3676 3689 3739.563547 3448.080855 3593.822201 3.555556587 0.294035 83 63 SH11945 11945 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6611 6630 9938.429708 5467.026277 7702.727993 3.886644562 0.829319 83 64 SH13037 13037 MT COX1 COX1ai2 32.10834 212.992063 32.10834 181.883723 106.9960315 2.02936767 -0.046201 83 65 SH7108 7108 snR63 snR63 46 65 31.838635 166.12505 98.9818425 1.995555534 0.041558 83 66 SH13598 13598 MT ATP8/AAP1 ATP8 29.585305 172.950872 29.585305 144.365567 86.975436 1.939396615 0.014108 83 67 SH18748 18748 YNL162W_14_331319_332151_INTRON_5_516 intron 31.346824 219.330627 31.346824 188.983803 110.1653135 2.042044875 -0.139574 83 68 SH11258 11258 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3176 3189 6252.875693 4286.020196 5269.447945 3.721765119 0.616514 83 69 SH13501 13501 MT COX1 intronic 34.925821 196.165913 34.925821 162.240092 98.5829565 1.993801838 0.238604 83 70 SH4578 4578 U3b (snR17b) U3b 446 461 181.759875 315.779335 248.769605 2.395797317 0.38649 83 71 SH13789 13789 MT COB intronic 28.919372 191.331343 28.919372 163.411971 96.1656715 1.983020069 -0.132974 83 72 SH1790 1790 Leu8 5' flank 28.923913 144.499015 86.711464 1.938076519 -0.034229 83 73 SH17318 17318 YHR203C_8_505526_504472_INTRON_15_283 3' exon 124.731035 395.962913 124.731035 272.231878 198.4814565 2.297719938 0.268664 83 74 SH16492 16492 YER117W_5_396765_397649_INTRON_43_513 5' exon 423.337593 1077.605892 423.337593 655.268299 539.302946 2.731832793 0.129181 83 75 SH10478 10478 RUF8 RUF8 316 332 29.073955 166.274551 97.674253 1.989780098 -0.135979 83 76 SH7908 7908 snoRNA cluster1 intergenic 29.118528 165.408178 29.118528 137.28965 83.204089 1.92014467 0.019779 83 77 SH3274 3274 Thr2 5' flank 31.105926 174.912255 103.0090905 2.012875553 -0.054334 83 78 SH15632 15632 YBR181C_2_592732_591670_INTRON_7_358 3' exon 48.833458 258.156082 48.833458 210.322624 129.578041 2.11253141 -0.031661 83 79 SH15269 15269 MT 9S rRNA 9S 28.138569 178.262698 28.138569 151.124129 89.631349 1.952459933 -0.127139 83 80 SH12316 12316 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.007392 181.490229 33.007392 149.482837 91.2451145 1.96020962 0.213595 83 81 SH21455 21455 copy of SH464 36.887205 158.394541 97.640873 1.989631654 0.35335 83 82 SH5429 5429 snR31 211-225+3' 211 29.018063 116.293208 72.6556355 1.861269306 0.14752 83 83 SH1423 1423 Leu1 3' flank 30.95232 212.967369 121.9598445 2.086216862 -0.356359 83 84 SH5095 5095 snR11 snR11 76 88 989.125316 1384.65957 1186.892443 3.074411365 -0.012696 83 85 SH2523 2523 Pro1 3' flank 54.483511 242.646491 148.565001 2.17191651 -0.260503 83 86 SH20598 20598 YHR041C spliced 34.875623 193.722101 114.298862 2.058041906 -0.065348 83 87 SH14368 14368 MT ORF9 and ORF10 (hypothetical) intergenic 27.064182 150.249318 27.064182 124.185136 75.624659 1.878663429 -0.050258 83 88 SH9816 9816 RUF4 3' 27.069216 120.668432 73.868824 1.868461185 -0.026014 83 89 SH5326 5326 snR30 snR30 481 493 2313.284694 1860.986193 2087.135444 3.319550633 0.63231 83 90 SH3449 3449 Trp1 tRNA 76 90 243.935163 404.26492 324.1000415 2.510679087 0.27851 83 91 SH13368 13368 MT COX1 intronic 28.958258 211.227946 28.958258 183.269688 106.113973 2.025772575 -0.235497 83 92 SH5123 5123 snR11 snR11 216 235 30.853826 185.511208 108.182517 2.034157082 -0.129319 83 93 SH20243 20243 YDR367W spliced 30.785473 142.47124 86.6283565 1.937660075 0.107888 83 94 SH12794 12794 MT COX1 COX1ai1 27.800765 175.454802 27.800765 148.654037 88.227401 1.945603486 -0.139733 83 95 SH4198 4198 telomerase RNA telomerase 26 43 28.692957 155.743489 92.218223 1.964816749 -0.11035 83 96 SH475 475 Asp2 5' flank 26.685225 147.269388 86.9773065 1.939405954 -0.218692 83 97 SH7303 7303 snR66 snR66 6 23 63.312603 212.914707 138.113655 2.140236618 0.132535 83 98 SH8420 8420 snoRNA cluster 5 snR190 47.674528 258.821732 47.674528 212.147204 129.910866 2.113645478 -0.067159 83 99 SH11077 11077 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2271 2286 980.650556 1150.382561 1065.516559 3.027560203 0.27257 83 100 SH17900 17900 YLR061W_12_263195_263949_INTRON_13_401 intron 32.050304 232.006866 32.050304 200.956562 116.503433 2.066338723 -0.216643 83 101 SH1751 1751 Leu7 tRNA 51 63 35.732197 180.272662 108.0024295 2.033433525 0.096915 83 102 SH12838 12838 MT COX1 COX1ai1 27.9965 176.542992 27.9965 149.546492 88.771496 1.948273539 -0.129621 83 103 SH9769 9769 RUF4 RUF4 621 633 29.756257 168.496978 99.1266175 1.996190287 -0.099293 83 104 SH3437 3437 Trp1 tRNA 16 31 70.584244 191.184708 130.884476 2.116888139 0.444025 84 2 SH17503 17503 YJL136C_10_156971_156248_INTRON_25_484 5' exon 44.490843 241.335652 44.490843 197.844809 121.167826 2.083387316 0.045365 84 3 SH2158 2158 Met2 5' flank 29.086648 178.147328 103.616988 2.015430964 -0.198425 84 4 SH9825 9825 RUF5-1 5' 29.398413 174.746464 102.0724385 2.00890849 -0.158912 84 5 SH12415 12415 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.723545 197.308962 31.723545 166.585417 99.154481 1.996312346 0.031977 84 6 SH14073 14073 MT COB Cytbi4 42.206312 238.961113 42.206312 197.754801 119.9805565 2.079110872 0.014379 84 7 SH7380 7380 snR68 121-136 + 3' 121 42.609368 201.276204 121.942786 2.086156113 -0.020252 84 8 SH13052 13052 MT COX1 COX1ai2 28.521569 194.778053 28.521569 167.256484 97.8890265 1.990734009 -0.180557 84 9 SH7251 7251 snR65 snR65 31 48 30.797551 165.285516 98.0415335 1.991410096 -0.015443 84 10 SH14550 14550 MT 21S rRNA 21S rRNA3 28.882954 207.075592 28.882954 179.192638 104.037796 2.017191143 -0.217507 84 11 SH5697 5697 snR34 snR34 406 422 30.050544 140.678257 85.3644005 1.931276795 0.067133 84 12 SH9086 9086 snR14 / U4 RNA U4 46 62 31.196179 139.718366 85.4572725 1.931749028 0.151197 84 13 SH2605 2605 Pro3 5' flank 50.284127 221.079399 135.681763 2.132521478 -0.121163 84 14 SH11764 11764 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5706 5723 721.425467 756.07383 738.7496485 2.868497287 0.560896 84 15 SH18342 18342 YML124C_13_23684_22049_INTRON_26_323 intron 29.29314 180.356145 29.29314 152.063005 90.6780725 1.95750228 -0.048014 84 16 SH10101 10101 RUF6 RUF6 351 370 29.344287 132.043159 80.693723 1.906839753 0.06641 84 17 SH17043 17043 YGR214W_7_920570_921783_INTRON_91_545 5' exon 29.382148 169.539189 29.382148 141.157041 85.2695945 1.930794198 0.017112 84 18 SH14530 14530 MT 21S rRNA 21S rRNA3 29.400415 188.960193 29.400415 160.559778 94.9800965 1.977632606 -0.084474 84 19 SH2745 2745 Pro5 3' flank 27.273777 126.302547 76.788162 1.885294272 -0.048404 84 20 SH11977 11977 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6771 6789 425.365183 622.296215 523.830699 2.719190947 0.220321 84 21 SH5854 5854 snR35 snR35 456 478 31.437676 185.640166 108.538921 2.0355855 -0.105984 84 22 SH14307 14307 MT VAR1 includes 5’ processing site VAR1 29.263455 170.02672 29.263455 141.763265 85.51336 1.932033971 0.005247 84 23 SH483 483 Asp2 5' flank 73.750066 221.309589 147.5298275 2.168879835 0.179713 84 24 SH9555 9555 RUF3 RUF3 161 173 7401.537737 4164.330803 5782.93427 3.762148256 0.880804 84 25 SH11624 11624 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5006 5023 62.949809 208.845383 135.897596 2.133211774 0.16802 84 26 SH7970 7970 snoRNA cluster 2 5'/snR57 31.237452 200.990281 31.237452 170.752829 100.9951405 2.004300478 -0.021994 84 27 SH6291 6291 snR42 snR42 236 252 100.117448 270.270964 185.194206 2.267627395 0.065936 84 28 SH3627 3627 Val1 3' flank 46.120102 175.201871 110.6609865 2.043994537 0.344317 84 29 SH4892 4892 snR8 3' 41.989183 176.558676 109.2739295 2.038516561 0.268026 84 30 SH10207 10207 RUF6 RUF6 881 898 31.492276 171.067292 101.279784 2.005522766 -0.008675 84 31 SH18204 18204 YML024W_13_225889_226697_INTRON_4_401 intron 29.465474 200.699548 29.465474 172.234074 100.849774 2.003674929 -0.139939 84 32 SH14615 14615 MT 21S rRNA Sce1 endonuc 29.551717 184.367256 29.551717 155.815539 92.683628 1.967003025 -0.049524 84 33 SH16869 16869 YGL187C_7_150529_149708_INTRON_1_342 intron 31.75509 181.935761 31.75509 151.180671 91.4678805 1.961268616 0.124176 84 34 SH287 287 Arg4 31-46 31 46 35.003225 192.019458 113.5113415 2.055039256 -0.043538 84 35 SH2310 2310 Phe2 3' flank 29.643648 174.297952 101.9708 2.008475827 -0.140771 84 36 SH9408 9408 RUF1 3' 29.591709 114.762967 72.177338 1.858400861 0.198757 84 37 SH2139 2139 Met1 3' flank 29.49826 175.19078 102.34452 2.010064593 -0.155153 84 38 SH4140 4140 SRP RNA SRP RNA 591 607 33.613114 203.928192 118.770653 2.074709144 -0.203255 84 39 SH9560 9560 RUF3 RUF3 186 202 31.338831 173.152883 102.245857 2.009645719 -0.030118 84 40 SH7039 7039 snR62 5' - 7 -14 7 31.18334 149.580214 90.381777 1.956080876 0.095091 84 41 SH10845 10845 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1111 1128 2163.016917 1241.709873 1702.363395 3.231052272 1.178293 84 42 SH8900 8900 LSR1 / U2 RNA U2 1141 1157 32.997425 147.144267 90.070846 1.954584242 0.225742 84 43 SH2522 2522 Pro1 3' flank 32.884012 194.816597 113.8503045 2.056334197 -0.133518 84 44 SH6711 6711 snR49 snR49 81 97 32.78158 195.764922 114.273251 2.057944583 -0.14545 84 45 SH12804 12804 MT COX1 COX1ai1 28.555637 170.325948 28.555637 142.770311 85.662974 1.932793148 -0.051837 84 46 SH14621 14621 MT 21S rRNA Sce1 endonuc 30.511274 188.844491 30.511274 159.333217 94.9222455 1.977368003 -0.001294 84 47 SH8455 8455 snoRNA cluster 5 snR128 55.038223 266.592197 55.038223 212.553974 133.7960985 2.12644345 0.028671 84 48 SH9624 9624 RUF3 3' 30.276739 177.595783 103.936261 2.016767089 -0.120311 84 49 SH16967 16967 YGR034W_7_555923_556666_INTRON_20_496 intron 34.235078 227.59057 34.235078 194.355492 114.295285 2.058028315 -0.085572 84 50 SH17865 17865 YLL050C_12_40413_39803_INTRON_15_193 intron 34.145688 181.373449 34.145688 148.227761 91.1867245 1.959931616 0.288147 84 51 SH2791 2791 Pro6 tRNA-intron 46 62 60.543596 210.418985 135.4812905 2.131879325 0.122483 84 52 SH18833 18833 YNL302C_14_62942_61957_INTRON_21_571 intron 34.131229 197.637845 34.131229 164.506616 99.3189225 1.997031999 0.181487 84 53 SH6123 6123 snR39B 5' 32.18424 185.083063 108.6336515 2.035964378 -0.072797 84 54 SH19106 19106 YOR312C_15_901173_900242_INTRON_2_427 intron 32.313348 210.930963 32.313348 179.617615 105.9654815 2.025164416 -0.01742 84 55 SH19063 19063 YOR293W_15_867094_867848_INTRON_53_489 5' exon 48.916367 260.927881 48.916367 213.011514 130.9639405 2.117151734 -0.058416 84 56 SH4614 4614 snR3 5' - 3 3 32.630942 179.112701 105.8718215 2.024780385 -0.000954 84 57 SH3327 3327 Thr3 5' flank 30.697394 182.27101 106.484202 2.027285181 -0.120918 84 58 SH4076 4076 SRP RNA SRP RNA 271 287 297.799232 512.0958 404.947516 2.607398739 0.111398 84 59 SH12177 12177 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7771 7790 30.798608 191.257209 111.0279085 2.045432159 -0.180888 84 60 SH3148 3148 Ser4 3' flank 30.748761 149.037851 89.893306 1.953727353 0.068909 84 61 SH19592 19592 AEP2/ATP13 2.1 28.567139 126.491722 77.5294305 1.889466594 0.045643 84 62 SH13433 13433 MT COX1 intronic 32.506667 187.617393 32.506667 156.110726 94.3086965 1.974551742 0.143546 84 63 SH479 479 Asp2 5' flank 137.206432 294.219886 215.713159 2.333876639 0.220179 84 64 SH7071 7071 snR62 3' 34.03048 201.551346 117.790913 2.071111788 -0.168991 84 65 SH20197 20197 YDR005C spliced 31.736619 181.396134 106.5663765 2.027620199 -0.055621 84 66 SH12711 12711 MT ORF 8 (hypothetical) ORF8 29.487871 182.068728 29.487871 153.580857 91.534364 1.961584168 -0.04231 84 67 SH17117 17117 YHR010W_8_126513_127484_INTRON_32_592 intron 29.266857 164.069752 29.266857 135.802895 82.534876 1.916637503 0.038966 84 68 SH16748 16748 YGL076C_7_365994_364333_INTRON_565_1032 intron 33.002153 194.022776 33.002153 162.020623 97.511388 1.989055338 0.134072 84 69 SH9553 9553 RUF3 RUF3 151 167 42.615103 184.380082 113.4975925 2.054986649 0.180196 84 70 SH18409 18409 YMR125W_13_517538_520445_INTRON_26_347 intron 32.727126 201.13614 32.727126 169.409014 101.06807 2.004613972 0.073122 84 71 SH11502 11502 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4396 4411 54.096825 184.419042 119.2579335 2.07648728 0.327703 84 72 SH16234 16234 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 30.712015 190.965898 30.712015 161.253883 95.982949 1.982194089 0.002609 84 73 SH18044 18044 YLR333C_12_796335_795573_INTRON_1_423 intron 46.297807 259.497535 46.297807 214.199728 130.2487675 2.114773622 -0.108037 84 74 SH19617 19617 RNA14 1.1 36.599678 177.35425 106.976964 2.029290268 0.153192 84 75 SH12338 12338 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.639656 256.201399 36.639656 220.561743 128.6006995 2.109243331 -0.319939 84 76 SH11880 11880 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6286 6304 239.044724 334.22311 286.633917 2.457327579 0.587713 84 77 SH7582 7582 snR189 5' - 2 -19 2 28.868558 166.22667 97.547614 1.989216651 -0.150459 84 78 SH19851 19851 Negative Control 32.732031 175.927452 104.3297415 2.018408131 0.033031 84 79 SH3731 3731 Val3 3' flank 30.738703 184.646622 107.6926625 2.032186114 -0.13156 84 80 SH954 954 Gly1 tRNA 21 37 46.213559 197.690711 121.952135 2.086189408 0.07126 84 81 SH10855 10855 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1161 1176 998.845848 912.515074 955.680461 2.980312707 0.668218 84 82 SH4414 4414 telomerase RNA telomerase 1106 1122 28.634005 155.070923 91.852464 1.963090811 -0.111112 84 83 SH12064 12064 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7206 7225 28.598769 128.837621 78.718195 1.896075127 0.03269 84 84 SH9203 9203 snR7 U5 RNA 3' 28.582036 124.365729 76.4738825 1.883513139 0.060763 84 85 SH8998 8998 snR17a / U3a U3a 276 295 35.331042 216.948428 126.139735 2.100851914 -0.304018 84 86 SH21618 21618 copy of SH7319 30.52886 165.8981 98.21348 1.9921711 -0.035582 84 87 SH7223 7223 snR64 3' 32.488317 195.323103 113.90571 2.056545495 -0.152402 84 88 SH15307 15307 YAL001C_1_151163_147591_INTRON_71_160 intron 30.588758 214.727808 30.588758 185.13905 107.863904 2.032876135 -0.143408 84 89 SH15340 15340 YAL030W_1_87288_87754_INTRON_103_215 intron 28.680485 155.878573 28.680485 128.198088 78.4392865 1.894533635 0.042682 84 90 SH20296 20296 YEL012W spliced 35.462859 182.561698 109.0122785 2.037475417 0.06656 84 91 SH10569 10569 RUF8 RUF8 771 787 28.682689 115.405824 72.0442565 1.857599364 0.12996 84 92 SH1945 1945 Lys2 5' flank 26.725922 120.635877 73.6808995 1.867354919 -0.051956 84 93 SH17362 17362 YIL052C_9_257061_256224_INTRON_38_509 intron 83.903775 345.728707 83.903775 262.824932 173.3643535 2.238959804 -0.047842 84 94 SH5736 5736 snR34 3' 30.475392 175.040528 102.75796 2.011815474 -0.093361 84 95 SH13289 13289 MT COX1 COX1-ai5a 32.322193 241.159173 32.322193 209.83698 121.0795865 2.083070929 -0.293169 84 96 SH392 392 Asn1 41-55 41 55 119.51295 311.745095 215.6290225 2.333707214 -0.028522 84 97 SH9612 9612 RUF3 3' 26.416097 128.231008 77.3235525 1.888311799 -0.126676 84 98 SH14252 14252 MT tRNA Ser 3' 26.336035 152.469331 26.336035 127.133296 76.7346655 1.884991604 -0.125793 84 99 SH11130 11130 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2536 2553 591.390377 627.279749 609.335063 2.784856169 0.616361 84 100 SH12719 12719 MT ORF 8 (hypothetical) 3' 28.051886 187.287173 28.051886 160.235287 94.1435865 1.973790739 -0.180276 84 101 SH20569 20569 YHR010W spliced 52.610002 176.866913 114.7384575 2.059709007 0.404068 84 102 SH18034 18034 YLR316C_12_766358_765266_INTRON_230_285 3' exon 35.382859 217.688635 35.382859 183.305776 109.3443175 2.038796218 0.056991 84 103 SH1024 1024 Gly2 3' flank 27.716743 113.163215 70.439979 1.847819218 0.076081 84 104 SH16304 16304 YDR450W_4_1359912_1360787_INTRON_48_482 intron 42.664666 249.210298 42.664666 207.545632 125.105149 2.097275184 -0.088969 85 2 SH7032 7032 snR62 5' 28.891983 163.736888 96.3144355 1.983691384 -0.13655 85 3 SH7476 7476 snR71 5' - 17 -4 17 70.995736 224.797944 147.89684 2.169958895 0.115451 85 4 SH193 193 Arg2 3' flank 30.475936 164.679332 97.577634 1.989350283 -0.031334 85 5 SH4919 4919 snR9 snR9 1 20 147.143991 337.509216 242.3266035 2.384401095 0.039949 85 6 SH3717 3717 Val3 66-73 + 3' flank 66 28.050385 134.526373 81.288379 1.910028463 -0.042938 85 7 SH12492 12492 MT_tRNA Pro 5' 26.262381 166.735082 26.262381 141.472701 83.867541 1.92359391 -0.220122 85 8 SH7828 7828 snoRNA cluster1 intergenic 30.588233 182.56495 30.588233 152.976717 91.782475 1.962759765 0.036915 85 9 SH2183 2183 Met2 tRNA 46 60 28.708444 171.476609 100.0925265 2.000401652 -0.18719 85 10 SH17809 17809 YKR057W_11_551293_551878_INTRON_25_346 exon/intron 28.84581 173.63509 28.84581 145.78928 87.317545 1.941101517 -0.046851 85 11 SH20928 20928 YLR388W spliced 75.16192 269.079805 172.1208625 2.235833514 -0.195849 85 12 SH4019 4019 SRP RNA 5' - 5 5 29.017569 147.05662 88.0370945 1.944665701 -0.041093 85 13 SH19533 19533 CBP1 1.2 29.074953 156.634599 92.854776 1.967804247 -0.087525 85 14 SH16552 16552 YER133W_5_432491_433954_INTRON_178_702 intron 31.230526 216.390965 31.230526 186.160439 108.6954825 2.036211495 -0.118626 85 15 SH1245 1245 Ile2 5' flank 195.160419 307.45457 251.3074945 2.40020544 0.511373 85 16 SH13491 13491 MT COX1 intronic 27.121696 178.526323 27.121696 152.404627 89.7631615 1.95309814 -0.211234 85 17 SH359 359 Arg5 3' flank 31.389163 154.863476 93.1263195 1.969072439 0.080625 85 18 SH1078 1078 Gly3 3' flank 31.421441 173.503637 102.462539 2.010565113 -0.027252 85 19 SH15694 15694 YBR220C_2_663261_662457_INTRON_302_722 exon/intron 31.432985 209.917654 31.432985 179.484669 105.458827 2.023082936 -0.060999 85 20 SH852 852 Glu2 tRNA 26 40 142.54706 355.778616 249.162838 2.396483269 -0.090085 85 21 SH19907 19907 YAL001C spliced 35.628623 198.412769 117.020696 2.068262677 -0.102341 85 22 SH4183 4183 telomerase RNA 5' 29.243661 177.546827 103.395244 2.014500562 -0.184931 85 23 SH20352 20352 YER117W spliced 29.208868 168.195158 98.702013 1.99432601 -0.135674 85 24 SH7300 7300 snR66 5' - 11 -9 11 35.513429 187.265013 111.389221 2.046843167 0.021304 85 25 SH3425 3425 Trp1 5' flank 155.50549 272.102013 213.8037515 2.330015321 0.494316 85 26 SH13639 13639 MT ATP6 ATP6 29.197954 151.972854 29.197954 123.7749 76.486427 1.883584374 0.108557 85 27 SH9957 9957 RUF5-1 RUF5-1 591 606 29.241902 148.793656 89.017779 1.949476754 -0.034041 85 28 SH17168 17168 YHR016C_8_138446_136872_INTRON_48_215 intron 31.425297 203.627864 31.425297 173.202567 102.313932 2.009934775 -0.025259 85 29 SH6946 6946 snR58 81-96 + 3' 91 33.639159 165.018196 99.3286775 1.997074653 0.151186 85 30 SH11473 11473 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4251 4268 10074.17813 9770.955305 9922.566717 3.996624028 -0.077284 85 31 SH4222 4222 telomerase RNA telomerase 146 158 35.98485 184.53645 110.26065 2.042420548 0.062601 85 32 SH14690 14690 MT 21S rRNA 3' 95.42228 298.754497 95.42228 204.332217 149.8772485 2.175735712 0.565466 85 33 SH17208 17208 YHR039C-A_8_187670_187164_INTRON_4_165 intron 29.698433 196.836549 29.698433 168.138116 98.9182745 1.995276532 -0.100904 85 34 SH12651 12651 MT_15S MT_15S 30.7811 194.274505 30.7811 164.493405 97.6372525 1.98961555 -0.011561 85 35 SH10161 10161 RUF6 RUF6 651 665 31.818811 181.305689 106.56225 2.027603382 -0.051681 85 36 SH15336 15336 YAL030W_1_87288_87754_INTRON_103_215 intron 36.0137 220.653507 36.0137 185.639807 110.8267535 2.044644611 0.050185 85 37 SH3697 3697 Val3 5' flank 29.48761 140.753521 85.1205655 1.9300345 0.026888 85 38 SH2587 2587 Pro2 3' flank 27.2303 118.159916 72.695108 1.861505186 0.003695 85 39 SH9329 9329 RUF1 RUF1 221 237 40.794238 189.639863 115.2170505 2.061516753 0.089711 85 40 SH21273 21273 YPL090C spliced 32.185785 166.708439 99.447112 1.997592175 0.058269 85 41 SH14194 14194 MT COB Exon6 33.078801 207.442306 33.078801 175.363505 104.221153 2.017955873 0.051073 85 42 SH1845 1845 Leu9 5' flank 30.86708 164.489899 97.6784895 1.989798935 -0.006325 85 43 SH12741 12741 MT COX1 COX1ai1 28.691 211.38017 28.691 183.68917 106.190085 2.026083968 -0.255152 85 44 SH6698 6698 snR49 snR49 16 32 30.665969 132.562868 81.6144185 1.911766891 0.156134 85 45 SH10460 10460 RUF8 RUF8 226 240 30.569144 172.568616 101.56888 2.006760664 -0.073169 85 46 SH1923 1923 Lys1 71-72 + 3' flank 71 90 28.41206 130.922601 79.6673305 1.901280265 0.005915 85 47 SH6550 6550 snR46 3' 30.34546 163.667361 97.0064105 1.986800435 -0.034344 85 48 SH19345 19345 YPL249C-A_16_76239_75699_INTRON_17_254 exon/intron 30.224834 190.108709 30.224834 160.883875 95.5543545 1.980250483 -0.028715 85 49 SH19428 19428 YPR132W_16_794960_795762_INTRON_66_430 intron 30.115561 209.790594 30.115561 180.675033 105.395297 2.022821232 -0.147755 85 50 SH6782 6782 snR50 86-90 + 3' 86 30.035526 171.53015 100.782838 2.003386584 -0.099957 85 51 SH2345 2345 Phe3 tRNA-intron/exon 51 67 626.722355 885.21691 755.9696325 2.87850435 0.127244 85 52 SH10095 10095 RUF6 RUF6 321 337 36.092797 135.835277 85.964037 1.934316802 0.476604 85 53 SH5209 5209 snR13 3' 28.06735 115.468054 71.767702 1.85592904 0.085015 85 54 SH16595 16595 YFL034C-A_6_64931_64242_INTRON_13_333 intron 30.211693 195.993549 30.211693 166.781856 98.4967745 1.993422009 -0.060503 85 55 SH20329 20329 YER074W spliced 36.496352 175.435162 105.965757 2.025165545 0.168164 85 56 SH4268 4268 telomerase RNA telomerase 376 393 30.498815 161.022229 95.760522 1.981186505 -0.010684 85 57 SH8172 8172 snoRNA cluster 3; snR70 28.556806 166.715611 28.556806 139.158805 83.8578055 1.923543493 -0.031784 85 58 SH1103 1103 Gly4 5' flank - tRNA3 3 32.7637 185.81621 109.289955 2.038580247 -0.058092 85 59 SH11476 11476 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4266 4282 22289.94669 16999.85615 19644.90142 4.293249854 0.07002 85 60 SH18087 18087 YLR344W_12_819312_820142_INTRON_20_466 3' exon 34.790653 203.964975 34.790653 170.174322 102.4824875 2.010649658 0.162204 85 61 SH18142 18142 YLR406C_12_931752_931062_INTRON_58_406 intron 44.97488 234.659176 44.97488 190.684296 117.829588 2.071254359 0.135712 85 62 SH2160 2160 Met2 5' flank 32.408773 188.906632 110.6577025 2.043981649 -0.098974 85 63 SH11465 11465 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4211 4229 17892.35174 15523.17474 16707.76324 4.222918312 -0.070211 85 64 SH15011 15011 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 159.682974 447.25783 159.682974 288.574856 224.128915 2.350497889 0.413141 85 65 SH13979 13979 MT COB intronic 29.656256 200.033733 29.656256 171.377477 100.5168665 2.002238941 -0.122808 85 66 SH7128 7128 snR63 snR63 146 161 39.343702 212.298943 125.8213225 2.099754246 -0.18995 85 67 SH9285 9285 RUF1 RUF1 1 17 33.136605 174.483866 103.8102355 2.016240176 0.06165 85 68 SH7608 7608 snR189 snR189 111 128 30.96807 132.66293 81.8155 1.912835589 0.176192 85 69 SH20272 20272 YDR447C spliced 71.887226 235.716327 153.8017765 2.186961352 0.02973 85 70 SH14661 14661 MT 21S rRNA 21S rRNA4 32.633642 195.487139 32.633642 163.853497 98.2435695 1.992304133 0.101651 85 71 SH8630 8630 snR19 / U1 RNA 646-668 + 3' 646 28.687575 119.538032 74.1128035 1.869893242 0.101155 85 72 SH2108 2108 Met1 5' flank 28.653528 154.950296 91.801912 1.962851727 -0.109068 85 73 SH5193 5193 snR13 121-124 + 3' 121 32.507213 151.928714 92.2179635 1.964815527 0.168758 85 74 SH8187 8187 snoRNA cluster 3; snR70/intergenic 32.511111 181.609304 32.511111 150.098193 91.304652 1.960492906 0.178827 85 75 SH3007 3007 Ser2 5' flank - tRNA12 12 102.357163 244.752429 173.554796 2.239436619 0.278132 85 76 SH14411 14411 MT 21S rRNA 21S rRNA3 269.6807 763.52282 269.6807 494.84212 382.26141 2.582360457 0.050273 85 77 SH5117 5117 snR11 snR11 186 203 97.450028 268.704117 183.0770725 2.262633959 0.050844 85 78 SH2891 2891 Pro8 5' flank 28.566209 199.7323 114.1492545 2.057473079 -0.348374 85 79 SH5684 5684 snR34 snR34 341 357 36.189845 159.104574 97.6472095 1.989659837 0.322939 85 80 SH12181 12181 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7791 7809 36.093614 191.269826 113.68172 2.055690636 -0.013316 85 81 SH4947 4947 snR9 snR9 141 158 32.170991 166.432739 99.301865 1.996957405 0.059091 85 82 SH21418 21418 Ser4 spliced 80.037816 249.538597 164.7882065 2.216926127 0.010088 85 83 SH16405 16405 YER056C-A_5_270183_269421_INTRON_38_434 intron 28.233894 174.555 28.233894 147.321106 87.7775 1.943383207 -0.100154 85 84 SH11705 11705 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5411 5424 75.026869 177.098012 126.0624405 2.100585711 0.652228 85 85 SH6541 6541 snR46 196-197 + 3' 196 26.306971 128.38141 77.3441905 1.888427698 -0.136161 85 86 SH15508 15508 YBR048W_2_332790_333771_INTRON_46_556 intron 28.228367 164.423549 28.228367 137.195182 82.7117745 1.917567338 -0.045073 85 87 SH15504 15504 YBR048W_2_332790_333771_INTRON_46_556 exon/intron 32.079966 215.051617 32.079966 183.971651 108.0258085 2.033527525 -0.066521 85 88 SH20962 20962 YML025C spliced 30.228278 179.459656 104.843967 2.020543445 -0.133913 85 89 SH11477 11477 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4271 4284 5587.357348 4092.412499 4839.884924 3.684835036 0.544078 85 90 SH10757 10757 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 671 687 80.413178 263.657909 172.0355435 2.235618184 -0.093408 85 91 SH8559 8559 snR19 / U1 RNA U1 291 308 30.352648 169.040819 99.6967335 1.998680929 -0.06547 85 92 SH16524 16524 YER131W_5_423587_424307_INTRON_1_361 intron 26.522629 165.370312 26.522629 139.847683 83.185156 1.920045835 -0.190268 85 93 SH602 602 Gln1 tRNA 51 65 32.245783 149.198933 90.722358 1.95771433 0.166688 85 94 SH13597 13597 MT ATP8/AAP1 5' / ATP8 32.197178 235.898651 32.197178 204.701473 118.4493255 2.073532592 -0.242323 85 95 SH6083 6083 snR37 snR37 331 350 30.221525 168.512092 99.3668085 1.997241341 -0.070381 85 96 SH4856 4856 snR8 snR8 61 76 4208.478791 4252.830893 4230.654842 3.626407595 0.115236 85 97 SH21012 21012 YML124C spliced 37.677202 196.30745 116.992326 2.068157376 -0.039556 85 98 SH10935 10935 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1561 1578 169.808191 291.240782 230.5244865 2.362717063 0.460975 85 99 SH8145 8145 snoRNA cluster 3; intergenic 26.118421 126.650363 26.118421 101.531942 63.8251815 1.804992058 0.045355 85 100 SH11795 11795 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5861 5879 166.030843 350.540226 258.2855345 2.412100084 0.10014 85 101 SH15958 15958 YDL130W_4_229906_230527_INTRON_115_415 intron 130.182919 440.796442 130.182919 311.613523 220.898221 2.344192218 0.059509 85 102 SH7526 7526 snR79 5' 29.605929 137.329476 83.4677025 1.921518459 0.054514 85 103 SH2672 2672 Pro4 tRNA-exon/intron 26 38 31.372825 136.646091 84.009458 1.924328183 0.180486 85 104 SH11832 11832 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6046 6059 35171.48378 33082.73682 34127.1103 4.533099516 -0.396003 86 2 SH2993 2993 Ser2 5' flank 29.026202 148.670158 88.84818 1.948648536 -0.048971 86 3 SH16681 16681 YGL030W_7_439087_439634_INTRON_4_233 intron 35.262392 199.26724 35.262392 165.004848 100.13362 2.000579917 0.230393 86 4 SH2520 2520 Pro1 3' flank 33.587835 171.05064 102.3192375 2.009957295 0.111387 86 5 SH16611 16611 YFL034C-B_6_63992_63015_INTRON_21_134 intron/exon 46.045772 247.220446 46.045772 202.174674 124.110223 2.093807556 0.018487 86 6 SH9671 9671 RUF4 RUF4 131 150 28.108919 140.90646 84.5076895 1.926896228 -0.074804 86 7 SH20336 20336 YER074W-A spliced 28.341179 149.377634 88.8594065 1.948703408 -0.10297 86 8 SH2294 2294 Phe2 tRNA 66 80 34.727038 162.471344 98.599191 1.993873352 0.226487 86 9 SH1026 1026 Gly2 3' flank 28.694819 146.562616 87.6287175 1.942646456 -0.062027 86 10 SH5083 5083 snR11 snR11 16 32 218.459253 418.019364 318.2393085 2.502753822 0.093658 86 11 SH6433 6433 snR45 snR45 11 32 58.188518 220.587567 139.3880425 2.144225519 -0.007985 86 12 SH16592 16592 YFL034C-A_6_64931_64242_INTRON_13_333 intron 28.936936 167.925175 28.936936 139.988239 84.4625875 1.926664382 -0.008566 86 13 SH5241 5241 snR30 snR30 56 71 49.957812 167.582669 108.7702405 2.036510089 0.493894 86 14 SH8533 8533 snR19 / U1 RNA U1 161 178 37.409761 191.574846 114.4923035 2.058776293 0.008553 86 15 SH1655 1655 Leu5 3' flank 33.267418 180.497452 106.882435 2.028906339 0.009192 86 16 SH760 760 Gln4 71-72 + 3' flank 71 33.330346 151.609073 92.4697095 1.965999493 0.220052 86 17 SH2553 2553 Pro2 tRNA 1 13 1101.005492 1618.376936 1359.691214 3.133440291 -0.121944 86 18 SH17643 17643 YJR145C_10_702761_701720_INTRON_15_270 intron 76.992039 347.191716 76.992039 271.199677 174.095858 2.240788439 -0.188934 86 19 SH5887 5887 snR35 3' 46.208461 189.837727 118.023094 2.071966996 0.162388 86 20 SH18225 18225 YML026C_13_223828_222987_INTRON_48_448 intron 29.278697 183.702769 29.278697 155.424072 92.3513845 1.965443411 -0.066748 86 21 SH5391 5391 snR31 snR31 21 37 31.395537 172.822008 102.1087725 2.009063055 -0.024795 86 22 SH11173 11173 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2751 2766 472.183399 765.70042 618.9419095 2.79164989 0.008886 86 23 SH7566 7566 snR189 5' 29.263524 131.178258 80.220891 1.904287481 0.065727 86 24 SH443 443 Asp1 tRNA 36 48 37.726467 189.427531 113.576999 2.055290389 0.039067 86 25 SH20287 20287 YDR471W spliced 54.738324 172.252455 113.4953895 2.05497822 0.488749 86 26 SH5709 5709 snR34 snR34 466 486 29.314837 131.860006 80.5874215 1.90626726 0.065377 86 27 SH4871 4871 snR8 snR8 136 152 35.740587 144.472741 90.106664 1.954756911 0.399556 86 28 SH3285 3285 Thr2 tRNA 26 40 29.449457 159.775247 94.612352 1.975947839 -0.077047 86 29 SH4677 4677 snR4 5' 31.669821 146.740028 89.2049245 1.95038883 0.142747 86 30 SH7946 7946 snoRNA cluster1 3' 31.765358 217.176961 31.765358 186.411603 109.0884805 2.037778892 -0.10056 86 31 SH15531 15531 YBR048W_2_332790_333771_INTRON_46_556 3' exon 33.995634 222.001064 33.995634 189.00543 111.500532 2.04727694 -0.042591 86 32 SH21203 21203 YOL127W spliced 151.119087 311.366821 231.242954 2.364068509 0.215788 86 33 SH13064 13064 MT COX1 intronic 29.787723 196.109606 29.787723 167.321883 98.554803 1.993677794 -0.090732 86 34 SH7660 7660 snoRNA cluster1 5' / snR78 51.312493 255.068034 51.312493 204.755541 128.034017 2.107325371 0.061344 86 35 SH10189 10189 RUF6 RUF6 791 808 42.598583 197.8285 120.2135415 2.079953392 0.01908 86 36 SH9522 9522 RUF3 5' - 14 -4 14 31.751359 207.73525 119.7433045 2.078251239 -0.283852 86 37 SH15732 15732 YBR230C_2_680008_679507_INTRON_12_108 intron 31.608456 180.467177 31.608456 149.858721 90.7335885 1.957768087 0.121686 86 38 SH13996 13996 MT COB intronic 29.326567 157.728056 29.326567 129.401489 79.364028 1.899623702 0.080887 86 39 SH9828 9828 RUF5-1 5' 29.165491 132.671401 80.918446 1.908047534 0.049839 86 40 SH18680 18680 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.012321 193.145578 29.012321 165.133257 97.072789 1.987097508 -0.134803 86 41 SH17364 17364 YIL052C_9_257061_256224_INTRON_38_509 intron 74.956497 323.94667 74.956497 249.990173 162.473335 2.210782095 -0.051648 86 42 SH7808 7808 snoRNA cluster1 intergenic 30.84 183.179703 30.84 153.339703 92.0898515 1.964211773 0.052006 86 43 SH211 211 Arg3 5' flank 30.738171 184.401219 107.569695 2.031689937 -0.130242 86 44 SH18419 18419 YMR133W_13_536206_537608_INTRON_1243_1358 intron 28.583029 160.803649 28.583029 133.22062 80.9018245 1.907958316 0.004134 86 45 SH21918 21918 copy of SH20001 36.730036 170.948606 103.839321 2.01636184 0.219526 86 46 SH12726 12726 MT COX1 5' / exon1 35.578424 251.825793 35.578424 217.247369 126.4128965 2.101791382 -0.302977 86 47 SH12432 12432 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.333411 190.721355 30.333411 161.387944 95.8606775 1.981640494 -0.023807 86 48 SH20383 20383 YFL034C-A spliced 32.251317 198.266709 115.259013 2.061674896 -0.186414 86 49 SH6562 6562 snR47 5' 30.109141 144.495335 87.302238 1.941025377 0.050359 86 50 SH15716 15716 YBR220C_2_663261_662457_INTRON_302_722 3' exon 28.009095 150.491519 28.009095 123.482424 75.7457595 1.879358325 0.025025 86 51 SH9254 9254 snR6 / U6 RNA 3' 32.017969 165.318126 98.6680475 1.994176534 0.057005 86 52 SH17604 17604 YJL205C-A_10_50443_50139_INTRON_33_175 intron 30.014053 190.671617 30.014053 161.657564 95.8358085 1.981527811 -0.047124 86 53 SH16360 16360 YEL012W_5_131772_132551_INTRON_6_128 exon/intron 40.231558 221.803242 40.231558 182.571684 111.401621 2.04689151 0.164836 86 54 SH11745 11745 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5611 5628 6808.462285 2405.226965 4606.844625 3.663403565 1.644279 86 55 SH12055 12055 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7161 7179 30.321639 132.392076 81.3568575 1.910394165 0.133357 86 56 SH4355 4355 telomerase RNA telomerase 811 828 30.451177 165.763912 98.1075445 1.991702406 -0.039523 86 57 SH2746 2746 Pro5 3' flank 30.556247 135.791694 83.1739705 1.919987434 0.129831 86 58 SH12150 12150 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7636 7653 907.139751 1335.461482 1121.300617 3.049722061 -0.066348 86 59 SH7242 7242 snR65 5' - 7 -14 7 32.684483 182.450324 107.5674035 2.031680686 -0.030145 86 60 SH21314 21314 YPL241C spliced 32.620862 174.267284 103.444073 2.014705612 0.038316 86 61 SH15087 15087 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.440907 210.944775 30.440907 181.503868 105.9723875 2.025192719 -0.132318 86 62 SH12438 12438 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.311319 212.139106 32.311319 180.827787 106.569553 2.027633144 -0.028826 86 63 SH19608 19608 RNA14 1.1 32.090093 128.000078 80.0450855 1.903334673 0.279033 86 64 SH775 775 Gln4 3' flank 31.846152 159.824593 95.8353725 1.981525835 0.081282 86 65 SH9778 9778 RUF4 RUF4 666 681 33.592448 214.03323 123.812839 2.092765682 -0.309021 86 66 SH14508 14508 MT 21S rRNA 21S rRNA3 39.285549 249.211488 39.285549 210.925939 125.105744 2.09727725 -0.17601 86 67 SH19183 19183 YPL079W_16_406631_407534_INTRON_12_432 intron 31.131272 183.151344 31.131272 153.020072 92.075672 1.964144897 0.073205 86 68 SH17712 17712 YKL081W_11_282533_284097_INTRON_206_531 intron 32.891736 224.16736 32.891736 192.275624 112.58368 2.05147544 -0.111083 86 69 SH14673 14673 MT 21S rRNA 21S rRNA4 28.833178 200.312834 28.833178 172.479656 100.656417 2.002841467 -0.182918 86 70 SH10660 10660 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 186 203 34.525671 178.166283 106.345977 2.026721065 0.0756 86 71 SH3200 3200 Ser5 3' flank 28.630902 180.531168 104.581035 2.019452936 -0.241453 86 72 SH18426 18426 YMR142C_13_551206_550205_INTRON_5_406 5' exon 59.506734 270.326319 59.506734 211.819585 135.6631595 2.132461927 0.095267 86 73 SH21829 21829 copy of SH16329 30.458911 177.867721 104.163316 2.017714797 -0.110652 86 74 SH21219 21219 YOR122C spliced 30.429778 178.911089 104.6704335 2.019824023 -0.118383 86 75 SH9838 9838 RUF5-1 5' - 16 -4 16 26.563055 113.724538 70.1437965 1.845989268 -0.015219 86 76 SH7237 7237 snR65 5' 38.041024 167.280231 102.6606275 2.011403915 0.298143 86 77 SH7335 7335 snR66 3' 30.306331 168.177021 99.241676 1.99669409 -0.06312 86 78 SH9853 9853 RUF5-1 RUF5-1 71 87 28.324492 177.959134 103.141813 2.013434761 -0.246988 86 79 SH7898 7898 snoRNA cluster1 intergenic 49.231066 255.502269 49.231066 207.271203 128.2511345 2.108061216 0.006035 86 80 SH19379 19379 YPR043W_16_654161_654842_INTRON_3_405 intron 32.895118 224.048928 32.895118 192.15381 112.524464 2.051246953 -0.10989 86 81 SH1483 1483 Leu2 3' flank 52.717071 182.877482 117.7972765 2.07113525 0.33017 86 82 SH2699 2699 Pro4 3' flank 29.867372 170.972509 100.4199405 2.00181996 -0.107144 86 83 SH10262 10262 RUF7 5' 29.803041 161.366101 95.584571 1.980387795 -0.060304 86 84 SH5861 5861 snR35 snR35 491 507 31.646514 195.898744 113.772629 2.056037794 -0.188817 86 85 SH16014 16014 YDL137W_4_216158_217074_INTRON_1_332 intron 365.953477 813.25191 365.953477 448.298433 407.125955 2.60972879 0.583359 86 86 SH2841 2841 Pro7 tRNA 11 28 54.325115 143.810364 99.0677395 1.995932253 0.89379 86 87 SH5804 5804 snR35 snR35 206 223 50.6362 191.872401 121.2543005 2.083697151 0.19655 86 88 SH10719 10719 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 481 499 29.919684 182.928021 106.4238525 2.027038976 -0.172544 86 89 SH17092 17092 YHL001W_8_104270_105084_INTRON_130_527 intron 30.001036 167.731457 30.001036 138.730421 84.3657285 1.926166061 0.074526 86 90 SH9135 9135 snR7 U5 RNA 5' 30.075876 136.019468 83.047672 1.919327463 0.095152 86 91 SH7646 7646 snoRNA cluster1 5' 28.230263 161.236748 28.230263 134.006485 81.118374 1.909119237 -0.026582 86 92 SH16891 16891 YGL189C_7_148970_148233_INTRON_1_368 3' exon 41.609595 240.597815 41.609595 199.98822 120.7989075 2.082063007 -0.019831 86 93 SH15290 15290 MT 9S rRNA 9S 26.356212 177.114155 26.356212 151.757943 89.0570775 1.949668439 -0.268217 86 94 SH14984 14984 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 26.332673 135.633511 26.332673 110.300838 68.3167555 1.834527233 -0.00755 86 95 SH12814 12814 MT COX1 COX1ai1 28.188103 179.624558 28.188103 152.436455 90.312279 1.955746802 -0.130173 86 96 SH16859 16859 YGL187C_7_150529_149708_INTRON_1_342 exon/intron 37.619374 187.463654 37.619374 150.84428 94.231827 1.974197611 0.451481 86 97 SH1568 1568 Leu4 tRNA 11 23 77.541861 235.52893 156.5353955 2.194612555 0.097533 86 98 SH13897 13897 MT COB intronic 27.988162 182.318536 27.988162 155.330374 91.659268 1.962176385 -0.159821 86 99 SH12119 12119 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7481 7499 32.625026 201.217617 116.9213215 2.067893715 -0.197543 86 100 SH7217 7217 snR64 3' 27.837176 124.595574 76.216375 1.882048289 0.004925 86 101 SH20688 20688 YIL133C spliced 48.470373 191.075468 119.7729205 2.078358639 0.178135 86 102 SH11126 11126 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2516 2531 9062.465892 10864.43778 9963.451834 3.998409826 -0.383049 86 103 SH14717 14717 MT tRNA cys; tRNA his 5' 29.453695 211.53097 29.453695 183.077275 106.265485 2.026392229 -0.202717 86 104 SH16608 16608 YFL034C-B_6_63992_63015_INTRON_21_134 intron 38.736875 227.356122 38.736875 189.619247 114.178061 2.057582663 0.055562 87 2 SH6136 6136 snR39B snR39B 21 38 29.190324 180.229822 104.710073 2.019988462 -0.203582 87 3 SH21678 21678 copy of SH9841 31.446231 171.169363 101.307797 2.005642871 -0.012016 87 4 SH1512 1512 Leu3 tRNA-exon/intron 31 48 29.715203 163.583583 96.649393 1.985199131 -0.077486 87 5 SH17803 17803 YKL190W_11_82949_83552_INTRON_53_128 intron 78.884055 306.792092 78.884055 228.908037 153.896046 2.187227462 0.169746 87 6 SH1828 1828 Leu8 3' flank 32.261026 152.229668 92.245347 1.964944469 0.151379 87 7 SH3240 3240 Thr1 tRNA 56 72 89.389575 239.310408 164.3499915 2.215769686 0.194438 87 8 SH12311 12311 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.688202 214.46339 32.688202 182.775188 107.731695 2.032343493 -0.03301 87 9 SH4008 4008 SRP RNA 5' 28.690198 137.433085 83.0616415 1.91940051 -0.012245 87 10 SH3887 3887 RNaseP 3' 28.778261 146.755871 87.767066 1.94333158 -0.056938 87 11 SH21565 21565 copy of SH5225 28.832027 148.55195 88.6919885 1.947884392 -0.062487 87 12 SH675 675 Gln3 5' flank 28.864214 149.781003 89.3226085 1.950961397 -0.066558 87 13 SH20403 20403 YFR031C-A spliced 58.203696 212.357662 135.280679 2.131235774 0.073071 87 14 SH9476 9476 RUF2 RUF2 221 237 37.284776 162.791229 100.0380025 2.000165011 0.319991 87 15 SH19385 19385 YPR043W_16_654161_654842_INTRON_3_405 intron 31.060655 190.525435 31.060655 160.46478 95.7627175 1.981196462 0.030009 87 16 SH14985 14985 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.03035 169.700491 29.03035 141.670141 85.3502455 1.931204775 -0.011085 87 17 SH18880 18880 YNR053C_14_723108_721117_INTRON_811_1341 intron/exon 62.877583 254.587158 62.877583 192.709575 127.793579 2.106509033 0.338146 87 18 SH18182 18182 YLR448W_12_1028848_1029762_INTRON_16_399 intron/exon 31.281854 199.857112 31.281854 169.575258 100.428556 2.001857218 -0.012307 87 19 SH15416 15416 YBL059W_2_110555_111205_INTRON_287_355 exon/intron 29.238924 197.21563 29.238924 168.976706 99.107815 1.996107901 -0.137295 87 20 SH9858 9858 RUF5-1 RUF5-1 96 118 29.289156 158.463695 93.8764255 1.972556545 -0.081697 87 21 SH12115 12115 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7461 7478 67.634476 237.840669 152.7375725 2.183945884 -0.040542 87 22 SH11554 11554 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4656 4671 42.087548 173.652022 107.869785 2.032899813 0.305834 87 23 SH15582 15582 YBR084C-A_2_415219_414144_INTRON_3_508 intron 31.486094 208.173213 31.486094 177.687119 104.5866065 2.019476072 -0.047617 87 24 SH1201 1201 Ile1 5' flank 31.509362 155.212813 93.3610875 1.970165902 0.086732 87 25 SH16444 16444 YER074W_5_306319_307192_INTRON_4_469 intron 35.79857 204.852342 35.79857 170.053772 102.926171 2.012525817 0.197611 87 26 SH2510 2510 Pro1 tRNA 41 53 198.127565 335.868475 266.99802 2.426508041 0.369934 87 27 SH4974 4974 snR10 5' 31.66627 199.265966 115.466118 2.062454565 -0.216828 87 28 SH8960 8960 snR17a / U3a U3a 86 103 29.611632 153.874066 91.742849 1.962572223 -0.035163 87 29 SH18296 18296 YML073C_13_124172_123227_INTRON_16_430 intron 29.694864 202.18068 29.694864 173.485816 101.59034 2.006852414 -0.132799 87 30 SH12093 12093 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7351 7376 29.773194 146.259506 88.01635 1.944563355 0.017243 87 31 SH21801 21801 copy of SH15071 27.683357 161.967201 94.825279 1.976924129 -0.21643 87 32 SH15226 15226 MT COX3 cox3 29.870113 191.55294 29.870113 162.682827 96.27647 1.983520158 -0.062222 87 33 SH20480 20480 YGL226C-A spliced 32.024635 195.550052 113.7873435 2.056093958 -0.171582 87 34 SH7595 7595 snR189 snR189 46 62 29.827008 162.589929 96.2084685 1.983213301 -0.064757 87 35 SH5113 5113 snR11 snR11 166 190 29.743226 144.372848 87.058037 1.93980887 0.025281 87 36 SH1086 1086 Gly4 5' flank 32.828913 190.595942 111.7124275 2.048101489 -0.098567 87 37 SH14987 14987 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.473197 166.284971 29.473197 137.811774 83.6424855 1.92242693 0.042319 87 38 SH6409 6409 snR43 3' 31.424135 146.901436 89.1627855 1.950183628 0.125694 87 39 SH18896 18896 YOL120C_15_94401_93394_INTRON_113_559 intron 33.352402 214.177634 33.352402 181.825232 107.588817 2.031767132 -0.00012 87 40 SH20858 20858 YLR078C spliced 4774.062325 3400.057858 4087.060092 3.611411023 0.634036 87 41 SH9563 9563 RUF3 RUF3 201 217 30.94531 127.758276 79.351793 1.899556744 0.204001 87 42 SH20946 20946 YLR448W spliced 34.984764 180.770664 107.877714 2.032931735 0.066936 87 43 SH17745 17745 YKL157W_11_154993_158183_INTRON_282_664 exon/intron 28.665837 178.03076 28.665837 150.364923 89.51538 1.95189766 -0.084115 87 44 SH5719 5719 snR34 snR34 516 534 35.812737 218.226384 127.0195605 2.103870606 -0.309313 87 45 SH16554 16554 YER133W_5_432491_433954_INTRON_178_702 intron 28.503513 153.132359 28.503513 125.628846 77.0661795 1.88686383 0.04673 87 46 SH3355 3355 Thr3 3' flank 48.976405 196.043561 122.509983 2.08817148 0.126984 87 47 SH10686 10686 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 316 333 30.356231 150.223143 90.289687 1.955638147 0.035828 87 48 SH2119 2119 Met1 5' flank 31.26488 180.400159 105.8325195 2.024619135 -0.076193 87 49 SH21649 21649 copy of SH8769 44.390775 203.078063 123.734419 2.092490523 -0.014806 87 50 SH17802 17802 YKL190W_11_82949_83552_INTRON_53_128 intron 417.48923 1105.122497 417.48923 688.633267 553.0612485 2.74277323 0.030122 87 51 SH7406 7406 snR69 5' 32.065395 156.533423 94.299409 1.974508971 0.115248 87 52 SH19227 19227 YPL090C_16_378390_377286_INTRON_7_400 intron 74.841293 340.023562 74.841293 266.182269 170.511781 2.231754391 -0.178485 87 53 SH10226 10226 RUF6 RUF6 976 993 30.113639 132.613408 81.3635235 1.910429748 0.117558 87 54 SH10009 10009 RUF5-1 3' 32.242713 186.221909 109.232311 2.038351122 -0.080974 87 55 SH3107 3107 Ser4 5' flank 32.360315 185.421789 108.891052 2.036992194 -0.069346 87 56 SH11664 11664 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5206 5219 38.633444 166.736814 102.685129 2.011507553 0.322146 87 57 SH2827 2827 Pro7 5' flank 34.617263 170.607758 102.6125105 2.011200313 0.151926 87 58 SH20284 20284 YDR471W spliced 34.661482 185.22362 109.942551 2.04116581 0.014752 87 59 SH6400 6400 snR43 3' 26.416988 122.619319 74.5181535 1.872262085 -0.089413 87 60 SH3040 3040 Ser2 3' flank 30.459902 191.675197 111.0675495 2.04558719 -0.197819 87 61 SH13090 13090 MT COX1 COX1ai3 28.2959 165.877333 28.2959 138.581433 83.4386665 1.921367355 -0.047875 87 62 SH13175 13175 MT COX1 Exon4 30.177505 210.108049 30.177505 180.930544 105.5540245 2.023474796 -0.145349 87 63 SH2489 2489 Pro1 5' flank 111.076896 293.877358 202.477127 2.30637597 0.00867 87 64 SH5936 5936 snR36 snR36 136 148 43.851785 187.562772 115.7072785 2.063360679 0.158254 87 65 SH2341 2341 Phe3 tRNA-exon/intron 31 48 31.555213 183.956463 107.755838 2.032440809 -0.086139 87 66 SH2893 2893 Pro8 5' flank - tRNA3 3 31.333704 192.172295 111.7529995 2.048259189 -0.168308 87 67 SH1266 1266 Ile2 tRNA exon/intron 26 42 31.127428 159.752013 95.4397205 1.979729159 0.038072 87 68 SH11548 11548 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4626 4641 4462.304191 1681.254952 3071.779572 3.487390048 1.658229 87 69 SH20705 20705 YJL024C spliced 28.839006 147.917053 88.3780295 1.946344314 -0.058639 87 70 SH6035 6035 snR37 snR37 91 107 62.718025 201.971592 132.3448085 2.12170691 0.236391 87 71 SH9637 9637 RUF4 5' 28.611466 152.735243 90.6733545 1.957479683 -0.100452 87 72 SH19417 19417 YPR132W_16_794960_795762_INTRON_66_430 intron 28.529572 179.007941 28.529572 151.478369 90.0039705 1.954261669 -0.0999 87 73 SH9808 9808 RUF4 3' 43.838271 178.186038 111.0121545 2.045370531 0.275269 87 74 SH20450 20450 YGL137W spliced 28.404218 169.790718 99.097468 1.996062558 -0.201296 87 75 SH9 9 Ala1 5' flank 28.346808 165.289267 96.8180375 1.985956275 -0.183728 87 76 SH9029 9029 snR17a / U3a U3a 431 448 28.283787 139.609013 83.9464 1.924002076 -0.054534 87 77 SH11142 11142 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2596 2609 56.826559 212.646569 134.736564 2.129485468 0.052009 87 78 SH15247 15247 MT tRNA fMet tRNA 30.019821 201.694221 30.019821 172.6744 101.3471105 2.005811371 -0.10769 87 79 SH2582 2582 Pro2 3' flank 28.029108 146.133629 87.0813685 1.939925245 -0.109179 87 80 SH7519 7519 snR79 5' 29.809449 161.566238 95.6878435 1.980856767 -0.060862 87 81 SH16522 16522 YER131W_5_423587_424307_INTRON_1_361 intron 37.213957 229.454695 37.213957 193.240738 115.2273475 2.061555565 -0.014017 87 82 SH17295 17295 YHR141C_8_382752_381991_INTRON_5_445 intron 27.74166 144.20276 27.74166 117.4611 72.60138 1.860944876 0.046794 87 83 SH8362 8362 snoRNA cluster4 3' 29.538643 173.995941 29.538643 145.457298 87.4979705 1.94199798 0.004913 87 84 SH3586 3586 Val1 5' flank 31.359812 188.517788 109.9388 2.041150992 -0.134911 87 85 SH17289 17289 YHR141C_8_382752_381991_INTRON_5_445 intron 31.353656 229.015164 31.353656 198.661508 115.007582 2.060726473 -0.223586 87 86 SH4306 4306 telomerase RNA telomerase 566 584 27.659332 144.361204 86.010268 1.934550301 -0.127639 87 87 SH9174 9174 snR7 U5 RNA U5 141 155 31.456935 145.029258 88.2430965 1.945680739 0.13825 87 88 SH4180 4180 telomerase RNA 5' 74.89614 177.431858 126.163999 2.100935446 0.646907 87 89 SH7469 7469 snR71 5' 29.781278 126.713537 78.2474075 1.893469957 0.129794 87 90 SH9587 9587 RUF3 RUF3 321 342 31.767928 161.084739 96.4263335 1.984195654 0.068705 87 91 SH11377 11377 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3771 3784 24644.1575 17680.38437 21162.27094 4.32556227 0.137751 87 92 SH18752 18752 YNL162W_14_331319_332151_INTRON_5_516 intron 30.017422 188.81809 30.017422 159.800668 94.909045 1.977307603 -0.037532 87 93 SH18147 18147 YLR406C_12_931752_931062_INTRON_58_406 intron 56.688255 260.333456 56.688255 204.645201 130.666728 2.116165016 0.131722 87 94 SH13921 13921 MT COB Cytbi3 30.03091 188.697828 30.03091 159.666918 94.848914 1.977032363 -0.035922 87 95 SH1048 1048 Gly3 5' flank 31.891067 183.082897 107.486982 2.031355869 -0.065424 87 96 SH12216 12216 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.835187 180.764116 31.835187 149.928929 90.882058 1.958478153 0.136139 87 97 SH21599 21599 copy of SH6670 29.879976 155.895874 92.887925 1.967959261 -0.027016 87 98 SH8139 8139 snoRNA cluster 3; intergenic 77.197211 292.123955 77.197211 215.926744 146.5619775 2.166021316 0.268732 87 99 SH5436 5436 snR31 3' 29.742609 157.393246 93.5679275 1.97112701 -0.044323 87 100 SH980 980 Gly1 3' flank 31.551496 178.305571 104.9285335 2.020893603 -0.047268 87 101 SH21201 21201 YOL127W spliced 33.356357 177.014274 105.1853155 2.021955114 0.045272 87 102 SH9353 9353 RUF1 RUF1 341 362 29.53166 148.580008 89.055834 1.949662375 -0.012414 87 103 SH6087 6087 snR37 snR37 351 367 35.080933 174.497423 104.789178 2.020316434 0.129825 87 104 SH20070 20070 YCR028C-A spliced 52.927298 216.047464 134.487381 2.128681536 -0.035339 88 2 SH11728 11728 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5526 5546 79.787394 244.818053 162.3027235 2.210325808 0.045494 88 3 SH592 592 Gln1 tRNA 1 17 640.176585 1059.020866 849.5987255 2.929213852 -0.13711 88 4 SH14095 14095 MT COB Cytbi4 29.870129 197.591482 29.870129 168.721353 99.295741 1.996930621 -0.093505 88 5 SH18790 18790 YNL301C_14_64561_63569_INTRON_113_544 intron 30.105244 173.607847 30.105244 144.502603 87.3039235 1.941033762 0.050049 88 6 SH18758 18758 YNL162W_14_331319_332151_INTRON_5_516 intron 34.416826 215.513855 34.416826 182.097029 108.2569275 2.034455697 0.034994 88 7 SH3516 3516 Tyr1 3' flank 30.512281 167.668098 99.0901895 1.996030659 -0.04738 88 8 SH17271 17271 YHR123W_8_354817_356083_INTRON_51_141 intron 28.598393 161.315295 28.598393 133.716902 81.1576475 1.90932945 0.002368 88 9 SH3834 3834 RNaseP RNaseP 136 150 28.700372 147.886229 88.2933005 1.945927752 -0.068626 88 10 SH14339 14339 MT VAR1 includes 5’ processing site VAR1 28.762911 186.005271 28.762911 158.24236 93.5026355 1.970823852 -0.118191 88 11 SH15363 15363 YBL027W_2_168385_169338_INTRON_3_386 5' exon 32.953676 234.233353 32.953676 202.279677 117.6166765 2.070468903 -0.199595 88 12 SH10826 10826 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1016 1034 230.819479 439.147672 334.9835755 2.525023514 0.071302 88 13 SH6758 6758 snR50 5' 30.899412 184.967308 107.93336 2.033155697 -0.123575 88 14 SH20169 20169 YDL136W spliced 28.842783 178.280872 103.5618275 2.015199706 -0.214926 88 15 SH12236 12236 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.889619 207.531261 28.889619 179.641642 104.2656305 2.018141174 -0.219618 88 16 SH3842 3842 RNaseP RNaseP 176 188 44.682039 202.814836 123.7484375 2.092539724 -0.007732 88 17 SH17918 17918 YLR061W_12_263195_263949_INTRON_13_401 intron/exon 29.051198 167.05965 29.051198 139.008452 84.029825 1.924433459 0.005208 88 18 SH5690 5690 snR34 snR34 371 387 254.407229 546.125481 400.266355 2.602349086 -0.186079 88 19 SH14931 14931 MT tRNA Asn 5' / tRNA 29.247443 187.327181 29.247443 159.079738 94.1635905 1.97388301 -0.087798 88 20 SH3272 3272 Thr2 5' flank 93.369801 222.308403 157.839102 2.198214601 0.379164 88 21 SH2249 2249 Phe1 3' flank 40.03531 153.554379 96.7948445 1.985852226 0.503827 88 22 SH10683 10683 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 301 316 229.647278 463.44928 346.548279 2.539763746 -0.027489 88 23 SH17946 17946 YLR128W_12_398531_399434_INTRON_4_97 intron 31.629206 210.217388 31.629206 179.588182 105.608694 2.023699672 -0.049952 88 24 SH1888 1888 Leu9 3' flank 31.672667 182.012532 106.8425995 2.028744446 -0.063761 88 25 SH14737 14737 MT tRNA cys; tRNA his 3' 29.584368 171.690584 29.584368 143.106216 86.345292 1.936238663 0.020869 88 26 SH1149 1149 His1 5' flank 29.638766 165.454529 97.5466475 1.989212348 -0.092044 88 27 SH21107 21107 YNL069C spliced 33.994184 166.217541 100.1058625 2.000459512 0.163454 88 28 SH15123 15123 MT tRNA Phe 5' 29.774571 185.466298 29.774571 156.691727 93.233149 1.969570353 -0.038475 88 29 SH10751 10751 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 641 658 62.286938 235.228481 148.7577095 2.172479483 -0.087093 88 30 SH2660 2660 Pro4 5' flank 32.064665 158.836902 95.4507835 1.979779498 0.100363 88 31 SH12524 12524 MT_ORF6 + ORF7 (hypothetical) ORF6/7 29.945949 172.476848 29.945949 143.530899 86.738424 1.938211527 0.044145 88 32 SH7784 7784 snoRNA cluster1 intergenic 29.955713 173.451228 29.955713 144.495515 87.225614 1.940644035 0.039611 88 33 SH2168 2168 Met2 5' flank 29.928471 175.33584 102.6321555 2.01128345 -0.128927 88 34 SH17040 17040 YGR183C_7_859471_859058_INTRON_4_216 intron 29.86127 224.098637 29.86127 195.237367 112.5493185 2.05134287 -0.252669 88 35 SH18983 18983 YOR096W_15_505793_506766_INTRON_145_545 intron 31.902868 221.854263 31.902868 190.951395 111.4271315 2.04699095 -0.135988 88 36 SH3812 3812 RNaseP RNaseP 26 43 31.755273 178.025733 104.890503 2.020736168 -0.033638 88 37 SH16192 16192 YDR381C-A_4_1238839_1238301_INTRON_27_220 5' exon 31.584416 213.645811 31.584416 183.061395 107.3229055 2.030692422 -0.0768 88 38 SH1110 1110 Gly4 tRNA 26 38 33.519297 176.444791 104.982044 2.021115024 0.056547 88 39 SH3426 3426 Trp1 5' flank 75.604476 274.584782 175.094629 2.243272824 -0.230083 88 40 SH16034 16034 YDL191W_4_117665_118518_INTRON_4_494 intron 43.647457 213.638419 43.647457 170.990962 107.3192095 2.030677465 0.365214 88 41 SH7790 7790 snoRNA cluster1 snR75 45.553565 248.607905 45.553565 204.05434 124.8039525 2.09622834 -0.009164 88 42 SH13865 13865 MT COB intronic 30.833941 180.014202 30.833941 150.180261 90.507101 1.956682654 0.068464 88 43 SH6882 6882 snR56 snR56 41 58 28.677415 123.881978 76.2796965 1.882408956 0.070844 88 44 SH11127 11127 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2521 2534 3270.298404 5174.080784 4222.189594 3.625537731 -0.523448 88 45 SH18794 18794 YNL301C_14_64561_63569_INTRON_113_544 intron 91.859672 342.957836 91.859672 252.098164 171.978918 2.235475212 0.117962 88 46 SH4479 4479 U3b (snR17b) 5' 28.451197 138.118789 83.284993 1.920566754 -0.033741 88 47 SH21130 21130 YNL130C spliced 34.508501 202.719718 118.6141095 2.074136353 -0.171711 88 48 SH19876 19876 Negative Control 30.311526 171.065445 100.6884855 2.002979808 -0.080101 88 49 SH9683 9683 RUF4 RUF4 191 210 30.223232 157.625988 93.92461 1.9727794 -0.012252 88 50 SH4953 4953 snR9 snR9 171 187 38.29442 185.393082 111.843751 2.048611724 0.096524 88 51 SH3377 3377 Thr4 5' flank 32.157253 168.185721 100.171487 2.000744121 0.047647 88 52 SH10268 10268 RUF7 5' 484.707829 724.234236 604.4710325 2.781375493 0.132674 88 53 SH21369 21369 Leu1_5 spliced 46.485838 216.900127 131.6929825 2.119562633 -0.133216 88 54 SH1616 1616 Leu5 5' flank 34.330495 210.774431 122.552463 2.088322044 -0.26023 88 55 SH17157 17157 YHR012W_8_129473_130440_INTRON_49_167 3' exon 32.377434 225.104093 32.377434 193.726659 113.0520465 2.053278428 -0.142649 88 56 SH106 106 Arg1 5' flank 30.406518 161.063103 95.7348105 1.981069882 -0.017179 88 57 SH7122 7122 snR63 snR63 116 135 30.454993 139.469643 84.962318 1.929226353 0.102013 88 58 SH12705 12705 MT ORF 8 (hypothetical) ORF8 30.465402 156.269438 30.465402 126.804036 78.634719 1.895614339 0.176926 88 59 SH10607 10607 RUF8 3' 30.430946 153.836207 92.1335765 1.96441793 0.021677 88 60 SH9814 9814 RUF4 3' 32.397428 177.709864 105.053646 2.02141113 0.003711 88 61 SH8191 8191 snoRNA cluster 3; intergenic 30.231418 176.919673 30.231418 147.688255 88.9598365 1.949193976 0.041064 88 62 SH16627 16627 YFL039C_6_54695_53260_INTRON_11_318 intron 30.080003 156.875136 30.080003 127.795133 78.937568 1.897283742 0.144046 88 63 SH6466 6466 snR45 3' 29.907168 124.405972 77.15657 1.887372913 0.153701 88 64 SH4839 4839 snR8 5' 29.722891 141.057105 85.389998 1.931407003 0.041947 88 65 SH13005 13005 MT COX1 COX1ai2 29.535849 192.285199 29.535849 163.74935 96.6425995 1.985168603 -0.090871 88 66 SH16433 16433 YER074W_5_306319_307192_INTRON_4_469 intron 49.18662 274.64655 49.18662 226.45993 137.823275 2.139322566 -0.189186 88 67 SH10258 10258 RUF7 5' 33.113014 185.995261 109.5541375 2.039628784 -0.047012 88 68 SH2696 2696 Pro4 3' flank 32.929284 169.950755 101.4400195 2.006209324 0.08139 88 69 SH16417 16417 YER056C-A_5_270183_269421_INTRON_38_434 intron 28.869624 188.019803 28.869624 160.150179 94.5099015 1.975477311 -0.120214 88 70 SH4745 4745 snR4 3' 32.610647 177.850308 105.2304775 2.022141541 0.010237 88 71 SH21813 21813 copy of SH15493 75.148 244.788689 159.9683445 2.20403405 -0.00735 88 72 SH2327 2327 Phe3 5' flank 32.356183 165.15628 98.7562315 1.994564509 0.077643 88 73 SH6956 6956 snR58 3' 26.504052 122.887104 74.695578 1.873294892 -0.084489 88 74 SH4224 4224 telomerase RNA telomerase 156 172 71.498144 217.663933 144.5810385 2.16011134 0.187 88 75 SH16462 16462 YER093C-A_5_348396_347908_INTRON_125_199 exon/intron 28.244314 191.879578 28.244314 164.635264 96.439789 1.984256252 -0.188034 88 76 SH12200 12200 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7886 7904 35.753318 149.694497 92.7239075 1.967191725 0.364148 88 77 SH21357 21357 YPR187W spliced 33.742353 180.773819 107.258086 2.030430043 0.023591 88 78 SH7937 7937 snoRNA cluster1 3' 27.967855 181.484086 27.967855 154.516231 91.242043 1.960195001 -0.157254 88 79 SH21481 21481 copy of SH1654 27.86359 162.482573 95.1730815 1.978514131 -0.205536 88 80 SH802 802 Glu1 tRNA 26 40 35.242808 167.810376 101.526592 2.006579808 0.201277 88 81 SH9804 9804 RUF4 3' 31.381194 202.188942 116.785068 2.067387318 -0.252234 88 82 SH6804 6804 snR52 5' 31.278619 187.193396 109.2360075 2.038365819 -0.12612 88 83 SH21138 21138 YNL162W spliced 29.34699 197.2448 113.295895 2.054214175 -0.290742 88 84 SH2338 2338 Phe3 tRNA 16 28 62.74642 215.491141 139.1187805 2.143385762 0.100312 88 85 SH10552 10552 RUF8 RUF8 686 703 29.30049 151.932537 90.6165135 1.957207349 -0.046798 88 86 SH7909 7909 snoRNA cluster1 intergenic 29.336692 184.405233 29.336692 156.068541 92.7026165 1.967091992 -0.065994 88 87 SH19669 19669 SIR1 2.4 33.126196 202.660331 117.8932635 2.07148899 -0.199996 88 88 SH1054 1054 Gly3 tRNA 6 23 53.816014 205.128257 129.4721355 2.112176311 0.090097 88 89 SH15131 15131 MT tRNA Phe tRNA 33.373867 199.318679 33.373867 166.944812 100.1593395 2.000691452 0.124591 88 90 SH3704 3704 Val3 tRNA 1 17 1383.947054 1754.318663 1569.132859 3.195659717 0.04889 88 91 SH20878 20878 YLR185W spliced 29.847082 142.032265 85.9396735 1.934193699 0.04536 88 92 SH11837 11837 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6071 6088 35.591567 189.76491 112.6782385 2.051840049 -0.006022 88 93 SH13994 13994 MT COB intronic 29.958583 193.896882 29.958583 164.938299 97.448441 1.988774896 -0.067239 88 94 SH1227 1227 Ile1 3' flank 28.072919 148.669156 88.3710375 1.946309954 -0.119295 88 95 SH13698 13698 MT tRNAGlu (and 5' processing site for COB) 5' 29.94148 203.978457 29.94148 175.036977 102.4892285 2.010678224 -0.126382 88 96 SH19729 19729 Negative Control 33.677063 192.625395 113.151229 2.053659275 -0.085884 88 97 SH21142 21142 YNL162W spliced 31.728985 191.525209 111.627097 2.047769631 -0.147599 88 98 SH9550 9550 RUF3 RUF3 136 153 31.665582 138.668203 85.1668925 1.930270801 0.188303 88 99 SH21613 21613 copy of SH7094 35.365064 185.425529 110.3952965 2.04295057 0.036986 88 100 SH6605 6605 snR47 3' 29.663058 163.498308 96.580683 1.984890272 -0.080709 88 101 SH11800 11800 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5886 5904 6817.521975 5116.584331 5967.053153 3.775759906 0.446867 88 102 SH14287 14287 MT VAR1 includes 5’ processing site VAR1 29.548688 173.020689 29.548688 144.472001 87.0103445 1.939570888 0.010926 88 103 SH4364 4364 telomerase RNA telomerase 856 871 101.586418 287.720056 194.653237 2.28926163 -0.039514 88 104 SH12940 12940 MT COX1 COX1ai2 31.305474 173.664599 31.305474 143.359125 87.3322995 1.941174895 0.137616 89 2 SH19726 19726 Negative Control 33.624954 166.603247 100.1141005 2.00049525 0.140684 89 3 SH18205 18205 YML024W_13_225889_226697_INTRON_4_401 intron 29.827924 180.812584 29.827924 151.98466 90.906292 1.958593944 -0.010051 89 4 SH9226 9226 snR6 / U6 RNA U6 1 15 28.018803 159.21356 93.6161815 1.971350923 -0.177543 89 5 SH36 36 Ala1 3' flank 28.215974 135.295905 81.7559395 1.912519314 -0.035134 89 6 SH21461 21461 copy of SH731 40.733929 201.853389 121.293659 2.083838097 -0.05381 89 7 SH8415 8415 snoRNA cluster 5 snR190 33.701404 175.666585 33.701404 142.965181 88.3332925 1.946124418 0.292892 89 8 SH9427 9427 RUF2 5' 28.655535 166.312193 97.483864 1.988932735 -0.166246 89 9 SH19560 19560 CBP1 2.2 28.7299 140.219467 84.4746835 1.926726573 -0.024974 89 10 SH4580 4580 U3b (snR17b) 456-462 + 3' 456 30.844485 197.095027 113.969756 2.056789618 -0.229841 89 11 SH21791 21791 copy of SH14651 47.523557 239.768275 143.645916 2.157293283 -0.338343 89 12 SH10506 10506 RUF8 RUF8 456 475 30.848129 162.397449 96.622789 1.985079569 0.005534 89 13 SH1596 1596 Leu4 3' flank 28.768643 174.67843 101.7235365 2.00742145 -0.198997 89 14 SH16002 16002 YDL137W_4_216158_217074_INTRON_1_332 intron 255.373124 714.224397 255.373124 459.851273 357.6121985 2.553412325 0.11013 89 15 SH6034 6034 snR37 snR37 86 102 67.545261 191.333526 129.4393935 2.112066469 0.407724 89 16 SH278 278 Arg4 5' flank - tRNA2 5' flank 2 28.915437 174.110444 101.5129405 2.006521408 -0.186173 89 17 SH3959 3959 RNase MRP RNaseMRP 211 227 29.024777 111.804713 70.414745 1.847663611 0.180712 89 18 SH21607 21607 copy of SH6883 29.150726 170.554738 99.852732 1.999359952 -0.151095 89 19 SH4260 4260 telomerase RNA telomerase 336 354 31.394223 183.927077 107.66065 2.032056998 -0.091996 89 20 SH14529 14529 MT 21S rRNA 21S rRNA3 31.521417 177.618766 31.521417 147.097349 89.309383 1.950897089 0.131029 89 21 SH14341 14341 MT VAR1 includes 5’ processing site VAR1 29.498764 204.924244 29.498764 176.42548 102.962122 2.012677485 -0.162257 89 22 SH15819 15819 YDL064W_4_337486_338069_INTRON_39_148 5' exon 31.716367 188.077187 31.716367 157.36082 94.5385935 1.975609137 0.089187 89 23 SH16729 16729 YGL076C_7_365994_364333_INTRON_565_1032 5' exon 31.785551 209.910867 31.785551 179.125316 105.4554335 2.023068961 -0.038112 89 24 SH20107 20107 YDL064W spliced 33.990372 166.764026 100.377199 2.001635073 0.159909 89 25 SH11657 11657 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5171 5186 1190.452162 1322.482921 1256.467542 3.099151274 0.300029 89 26 SH16283 16283 YDR447C_4_1355542_1354818_INTRON_4_317 intron 27.654061 150.629371 27.654061 123.97531 75.8146855 1.879753338 -0.004512 89 27 SH14761 14761 MT ORF11; tRNA Leu; tRNA Gln ORF11 29.861691 186.156298 29.861691 157.294607 93.578149 1.97117445 -0.035522 89 28 SH20206 20206 YDR059C spliced 301.68163 552.822253 427.2519415 2.630684045 -0.001492 89 29 SH6775 6775 snR50 snR50 51 70 36.466907 188.941006 112.7039565 2.051939162 0.020644 89 30 SH1396 1396 Leu1 tRNA-intron 51 63 30.010227 165.226627 97.618427 1.989531805 -0.065079 89 31 SH520 520 Cys1 5' flank 32.192154 201.874733 117.0334435 2.068309984 -0.219045 89 32 SH7938 7938 snoRNA cluster1 3' 30.009127 176.437403 30.009127 147.428276 88.7187015 1.948015177 0.027175 89 33 SH4283 4283 telomerase RNA telomerase 451 465 29.9573 183.093254 106.525277 2.027452672 -0.171113 89 34 SH10389 10389 RUF7 3' 32.024117 176.120186 104.0721515 2.017334533 -0.006944 89 35 SH5393 5393 snR31 snR31 31 46 31.893303 152.750147 92.321725 1.965303911 0.124823 89 36 SH1544 1544 Leu3 3' flank 29.598784 120.79656 75.197672 1.876204396 0.156785 89 37 SH3714 3714 Val3 tRNA 51 65 35.811695 175.215863 105.513779 2.023309178 0.147589 89 38 SH12768 12768 MT COX1 COX1ai1 29.269068 181.594419 29.269068 153.325351 91.2972095 1.960457504 -0.056417 89 39 SH9705 9705 RUF4 RUF4 301 313 36.47104 181.304091 108.8875655 2.036978288 0.110582 89 40 SH7275 7275 snR65 3' 33.157808 176.917303 105.0375555 2.021344606 0.039045 89 41 SH19532 19532 CBP1 1.2 30.944118 179.207812 105.075965 2.021503387 -0.088733 89 42 SH3995 3995 RNase MRP 3' 28.772051 149.864456 89.3182535 1.950940222 -0.073728 89 43 SH6000 6000 snR37 5' 34.920498 157.419858 96.170178 1.98304042 0.268963 89 44 SH11153 11153 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2651 2668 759.135885 1159.212692 959.1742885 2.981897529 -0.066961 89 45 SH5903 5903 snR36 5' 28.578248 170.783686 99.680967 1.998612242 -0.193343 89 46 SH7243 7243 snR65 5' - 12 -9 12 28.510493 168.721083 98.615788 1.993946449 -0.188426 89 47 SH1769 1769 Leu7 3' flank 445.564309 741.471485 593.517897 2.773433819 -0.010704 89 48 SH12953 12953 MT COX1 COX1ai2 28.359122 185.141178 28.359122 157.782056 93.070589 1.968812462 -0.145172 89 49 SH16813 16813 YGL178W_7_167356_170575_INTRON_4_643 exon/intron 30.331905 162.910869 30.331905 133.578964 81.9554345 1.913577757 0.127114 89 50 SH7846 7846 snoRNA cluster1 snR74 40.488771 214.334132 40.488771 174.845361 107.667066 2.032082878 0.26352 89 51 SH18923 18923 YOL121C_15_92849_92025_INTRON_21_410 intron 87.666204 339.389793 87.666204 252.723589 170.1948965 2.230946533 0.069572 89 52 SH8923 8923 snR17a / U3a 5' 36.364622 198.391541 117.3780815 2.069587007 -0.087642 89 53 SH21792 21792 copy of SH14652 32.312281 169.084108 100.6981945 2.003021684 0.051225 89 54 SH11043 11043 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2101 2118 14371.38002 6061.34462 10216.36232 4.009296287 1.142301 89 55 SH3883 3883 RNaseP 3' 30.361594 122.802625 76.5821095 1.884127325 0.195466 89 56 SH326 326 Arg5 5' flank 30.396349 150.395913 90.396131 1.956149843 0.037638 89 57 SH9032 9032 snR17a / U3a U3a 446 458 1034.897197 957.963159 996.430178 2.998446872 0.635289 89 58 SH7058 7058 snR62 snR62 81 98 32.432416 170.590771 101.5115935 2.006515645 0.049149 89 59 SH488 488 Asp2 tRNA 1 18 1329.69459 1326.841748 1328.268169 3.123285765 0.438277 89 60 SH18814 18814 YNL302C_14_62942_61957_INTRON_21_571 intron 34.312062 229.185105 34.312062 195.873043 115.0925525 2.061047222 -0.100922 89 61 SH17275 17275 YHR141C_8_382752_381991_INTRON_5_445 5' exon 42.315495 244.334088 42.315495 203.018593 122.667044 2.0887279 -0.044103 89 62 SH11930 11930 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6536 6551 50.237847 190.603158 120.4205025 2.080700435 0.206464 89 63 SH12254 12254 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.825922 172.44495 29.825922 143.619028 86.722475 1.938131664 0.035208 89 64 SH7244 7244 snR65 5' - 18 -4 18 29.669581 156.587595 93.128588 1.969083018 -0.045267 89 65 SH21501 21501 copy of SH2551 57.457968 222.405585 139.9317765 2.145916348 -0.035027 89 66 SH8855 8855 LSR1 / U2 RNA U2 916 931 757.448068 1017.31739 887.382729 2.948110972 0.141 89 67 SH8692 8692 LSR1 / U2 RNA U2 101 119 60.813743 216.154296 138.4840195 2.14139966 0.068674 89 68 SH11852 11852 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6146 6162 34.930613 159.987228 97.4589205 1.988821597 0.253068 89 69 SH15401 15401 YBL050W_2_125087_126081_INTRON_31_146 intron 28.908743 183.64298 28.908743 155.734237 92.32149 1.965302805 -0.094753 89 70 SH7699 7699 snoRNA cluster1 intergenic 26.831878 138.104214 26.831878 112.272336 69.552107 1.842310291 0.016159 89 71 SH21776 21776 copy of SH14040 28.634952 173.47519 101.055071 2.004558112 -0.201897 89 72 SH20123 20123 YDL079C spliced 30.42822 180.966762 105.697491 2.024064678 -0.130086 89 73 SH20320 20320 YER044C-A spliced 26.47575 116.82671 71.65123 1.85522365 -0.044444 89 74 SH3458 3458 Trp1 3' flank 53.116187 198.720754 125.9184705 2.10008944 0.150848 89 75 SH6480 6480 snR45 3' 26.268455 133.227517 79.747986 1.901719724 -0.169882 89 76 SH2564 2564 Pro2 tRNA-intron/exon 56 71 70.808246 273.067135 171.9376905 2.235371089 -0.278625 89 77 SH8582 8582 snR19 / U1 RNA U1 406 418 199.772857 330.614203 265.19353 2.423562924 0.407197 89 78 SH5244 5244 snR30 snR30 71 87 31.601591 149.755479 90.678535 1.957504495 0.121793 89 79 SH4365 4365 telomerase RNA telomerase 861 879 37.095124 225.102321 131.0987225 2.11759846 -0.359092 89 80 SH14943 14943 MT tRNA Met 5' 27.63424 168.141128 27.63424 141.506888 84.570564 1.927219227 -0.113987 89 81 SH9437 9437 RUF2 RUF2 26 44 27.533454 148.521368 88.027411 1.944617929 -0.159386 89 82 SH19241 19241 YPL090C_16_378390_377286_INTRON_7_400 intron 27.445874 169.188679 27.445874 142.742805 85.0943395 1.929900672 -0.135169 89 83 SH2114 2114 Met1 5' flank 31.992515 166.912124 99.4523195 1.997614917 0.045769 89 84 SH8575 8575 snR19 / U1 RNA U1 371 387 31.028909 192.908168 111.9685385 2.049096009 -0.186467 89 85 SH19231 19231 YPL090C_16_378390_377286_INTRON_7_400 intron 121.472569 426.228161 121.472569 305.755592 213.6140805 2.329629876 0.024269 89 86 SH16026 16026 YDL189W_4_122079_123590_INTRON_1_99 3' exon 51.438273 264.814825 51.438273 214.376552 132.9074125 2.123549203 -0.037894 89 87 SH14217 14217 MT ATP9 ATP9 68.351665 295.32488 68.351665 227.973215 148.16244 2.170738122 0.05456 89 88 SH16917 16917 YGL251C_7_31636_27921_INTRON_59_210 intron 30.347437 217.761573 30.347437 188.414136 109.3807865 2.038941042 -0.17603 89 89 SH6493 6493 snR46 5' 41.690839 184.33124 113.0110395 2.05312087 0.167642 89 90 SH4067 4067 SRP RNA SRP RNA 226 245 29.670948 163.588034 96.629491 1.985109692 -0.080601 89 91 SH15432 15432 YBL072C_2_89435_88518_INTRON_1_308 intron 31.662265 195.843627 31.662265 165.181362 98.4218135 1.993091363 0.036962 89 92 SH5613 5613 snR34 5' - 3 -14 3 27.97998 134.650692 81.315336 1.910172461 -0.048872 89 93 SH17441 17441 YIL133C_9_99416_98527_INTRON_32_321 intron 28.026344 173.013314 28.026344 145.98697 87.006657 1.939552482 -0.108604 89 94 SH13320 13320 MT COX1 COX1-ai5a 29.929777 210.835702 29.929777 181.905925 105.917851 2.024969161 -0.166221 89 95 SH1631 1631 Leu5 tRNA 21 35 29.916062 182.878918 106.39749 2.026931383 -0.172498 89 96 SH5619 5619 snR34 snR34 16 32 31.768222 154.780834 93.274528 1.96976306 0.105969 89 97 SH14859 14859 MT tRNA Ser2; tRNA Arg2 tRNA Ser 27.948888 185.693725 27.948888 158.744837 93.3468625 1.970099725 -0.18034 89 98 SH19991 19991 YBL092W spliced 35.428388 161.730025 98.5792065 1.993785318 0.268511 89 99 SH7274 7274 snR65 3' 31.604411 192.927531 112.265971 2.050248137 -0.164622 89 100 SH3120 3120 Ser4 tRNA 6 18 7015.997787 6010.51513 6513.256459 3.813798179 0.227862 89 101 SH17701 17701 YKL081W_11_282533_284097_INTRON_206_531 5' exon 33.381787 181.250791 33.381787 148.869004 91.1253955 1.959639426 0.240335 89 102 SH11926 11926 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6516 6529 42.750268 193.574368 118.162318 2.072479002 0.070891 89 103 SH14974 14974 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.664566 192.567481 27.664566 165.902915 96.7837405 1.985802403 -0.237289 89 104 SH2888 2888 Pro8 5' flank 29.496673 145.923864 87.7102685 1.94305044 -0.000578 90 2 SH1254 1254 Ile2 5' flank 29.840969 156.089975 92.965472 1.968321679 -0.030735 90 3 SH595 595 Gln1 tRNA 16 32 32.087924 142.491818 87.289871 1.940963852 0.193765 90 4 SH19249 19249 YPL129W_16_305297_306136_INTRON_10_114 intron 32.296755 201.863472 32.296755 170.566717 101.431736 2.006173858 0.041457 90 5 SH13563 13563 MT COX1 Exon 6 29.406146 186.556566 29.406146 158.15042 93.778283 1.972102277 -0.071821 90 6 SH21456 21456 copy of SH552 57.532155 199.088097 128.310126 2.108260931 0.201695 90 7 SH3443 3443 Trp1 tRNA 46 62 36.940717 204.215237 120.577977 2.081267993 -0.139533 90 8 SH4571 4571 U3b (snR17b) U3b 411 427 119.243783 262.387347 190.815565 2.280613798 0.293513 90 9 SH12553 12553 MT_15S 5' 28.782538 181.62956 28.782538 153.847022 91.31478 1.960541077 -0.093956 90 10 SH19966 19966 YBL059W spliced 29.834673 138.526035 84.180354 1.925210748 0.063963 90 11 SH1011 1011 Gly2 tRNA 46 58 35.021926 171.843836 103.432881 2.014658622 0.153666 90 12 SH11176 11176 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2766 2782 561.704983 814.436461 688.070722 2.837633079 0.12538 90 13 SH283 283 Arg4 11-25 11 25 28.744435 189.576123 109.160279 2.038064637 -0.283724 90 14 SH8079 8079 snoRNA cluster 2 snR61/3' 28.755046 168.847184 28.755046 141.092138 84.923592 1.929028355 -0.027967 90 15 SH6458 6458 snR45 snR45 136 150 148.368933 336.460252 242.4145925 2.384558759 0.054378 90 16 SH901 901 Glu3 tRNA 16 30 1811.757887 1555.831596 1683.794742 3.226289149 0.590986 90 17 SH18897 18897 YOL120C_15_94401_93394_INTRON_113_559 intron 31.114521 166.094557 31.114521 135.980036 83.5472785 1.921932308 0.166882 90 18 SH10840 10840 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1086 1106 390.173417 686.611637 538.392527 2.731099023 -0.04871 90 19 SH9534 9534 RUF3 RUF3 56 77 29.323392 130.874641 80.0990165 1.903627184 0.071837 90 20 SH17372 17372 YIL052C_9_257061_256224_INTRON_38_509 intron 31.599184 202.656316 31.599184 172.057132 101.828158 2.007867888 -0.008202 90 21 SH8643 8643 snR19 / U1 RNA 3' 30.666828 167.695005 99.1809165 1.996428117 -0.038099 90 22 SH15567 15567 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.701552 187.798184 29.701552 159.096632 94.399092 1.974967817 -0.055909 90 23 SH9269 9269 RUF1 5' 36.239201 197.642534 116.9408675 2.067966311 -0.081849 90 24 SH1688 1688 Leu6 tRNA 6 18 884.723338 1255.110206 1069.916772 3.029349996 0.000902 90 25 SH3409 3409 Thr4 3' flank 32.05809 131.189513 81.6238015 1.911816817 0.257751 90 26 SH6904 6904 snR56 3' 29.947428 145.71981 87.833619 1.943660777 0.032347 90 27 SH4936 4936 snR9 snR9 86 105 51.703622 219.191016 135.447319 2.131770413 -0.08317 90 28 SH1299 1299 Ile2 3' flank 34.370871 136.271533 85.321202 1.931056965 0.372558 90 29 SH2148 2148 Met1 3' flank 32.234149 154.836675 93.535412 1.970976064 0.135893 90 30 SH20684 20684 YIL111W spliced 32.248766 174.43496 103.341863 2.014276287 0.015892 90 31 SH9809 9809 RUF4 3' 30.067469 161.447471 95.75747 1.981172663 -0.042381 90 32 SH2104 2104 Met1 5' flank 30.027154 135.377635 82.7023945 1.917518084 0.095424 90 33 SH12593 12593 MT_15S MT_15S 29.954151 175.651673 29.954151 146.697522 88.3258365 1.946087759 0.027395 90 34 SH16642 16642 YFR024C-A_6_203420_201947_INTRON_48_165 3' exon 29.849265 198.516563 29.849265 169.667298 99.7582815 1.998948959 -0.100492 90 35 SH21472 21472 copy of SH1242 31.861427 179.205551 105.533489 2.023390296 -0.03411 90 36 SH15804 15804 YDL061C_4_341182_340627_INTRON_1_408 intron 33.833535 224.133306 33.833535 191.299771 112.566653 2.051409753 -0.068678 90 37 SH10859 10859 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1181 1199 31.525909 131.171211 81.34856 1.91034987 0.222604 90 38 SH6815 6815 snR52 5' 39.810266 205.477688 122.643977 2.088646225 -0.108243 90 39 SH16001 16001 YDL137W_4_216158_217074_INTRON_1_332 intron 33.299692 211.220711 33.299692 178.921019 106.1103555 2.02575777 0.025156 90 40 SH2468 2468 Phe5 3' flank 31.063777 188.876382 109.9700795 2.041274539 -0.14948 90 41 SH13149 13149 MT COX1 intronic 28.87208 202.687008 28.87208 174.814928 101.843504 2.007933333 -0.193081 90 42 SH21815 21815 copy of SH15700 30.873694 197.756336 114.315015 2.058103278 -0.23436 90 43 SH19949 19949 YBL050W spliced 63.104812 239.840731 151.4727715 2.180334572 -0.116652 90 44 SH17007 17007 YGR148C_7_788173_787307_INTRON_1_392 intron 31.794876 217.051206 31.794876 186.25633 109.025603 2.037528497 -0.098041 90 45 SH14029 14029 MT COB Exon4 30.708128 169.243544 30.708128 139.535416 85.121772 1.930040656 0.119079 90 46 SH8917 8917 LSR1 / U2 RNA 3' 111.472267 299.65758 205.5649235 2.312949011 -0.024612 90 47 SH17245 17245 YHR097C_8_298611_297387_INTRON_126_249 5' exon 61.622781 274.699125 61.622781 214.076344 137.8495625 2.139405392 0.099245 90 48 SH7378 7378 snR68 snR68 111 130 32.583234 146.191939 89.3875865 1.951277211 0.204787 90 49 SH14353 14353 MT ORF9 and ORF10 (hypothetical) 5' 26.364737 146.6857 26.364737 121.320963 73.84285 1.86830845 -0.084583 90 50 SH18660 18660 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.418123 155.386464 30.418123 125.968341 78.193232 1.893169164 0.178808 90 51 SH21631 21631 copy of SH7931 34.48441 178.059168 106.271789 2.026417992 0.075183 90 52 SH8212 8212 snoRNA cluster 3; snR51 32.42294 188.844732 32.42294 157.421792 94.922366 1.977368555 0.130227 90 53 SH2816 2816 Pro6 3' flank 30.379296 197.956776 114.168036 2.05754453 -0.255407 90 54 SH2235 2235 Phe1 tRNA-intron/exon 51 67 127.766612 347.443143 237.6048775 2.375855352 -0.161365 90 55 SH21135 21135 YNL147W spliced 36.545983 235.458349 136.002166 2.133545825 -0.47083 90 56 SH18366 18366 YMR079W_13_424988_426058_INTRON_10_165 intron 32.435834 179.90292 32.435834 148.467086 90.45146 1.956415581 0.182867 90 57 SH12234 12234 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.450413 240.449985 34.450413 206.999572 120.7249925 2.081797187 -0.218404 90 58 SH3817 3817 RNaseP RNaseP 51 63 34.385146 203.609155 118.9971505 2.075536562 -0.183779 90 59 SH8483 8483 snR19 / U1 RNA 5' 38.371154 173.122509 105.7468315 2.024267363 0.247081 90 60 SH1087 1087 Gly4 5' flank 36.20523 201.824759 119.0149945 2.075601681 -0.128117 90 61 SH8812 8812 LSR1 / U2 RNA U2 701 713 6386.136149 5277.626244 5831.881197 3.765808668 0.312933 90 62 SH15304 15304 YAL001C_1_151163_147591_INTRON_71_160 intron 37.929184 172.552832 37.929184 135.623648 86.776416 1.938401709 0.574879 90 63 SH6679 6679 snR49 5' 31.744182 137.388108 84.566145 1.927196533 0.200961 90 64 SH21884 21884 copy of SH18599 33.604269 192.670582 113.1374255 2.053606292 -0.088872 90 65 SH21875 21875 copy of SH18250 27.496961 129.928288 78.7126245 1.896044393 -0.055098 90 66 SH945 945 Gly1 5' flank 33.310363 186.937473 110.123918 2.041881654 -0.048421 90 67 SH7462 7462 snR71 5' 33.158841 148.033958 90.5963995 1.957110938 0.230985 90 68 SH7350 7350 snR68 5' 29.081569 117.766068 73.4238185 1.865836967 0.141585 90 69 SH4771 4771 snR5 snR5 26 43 30.888733 174.472271 102.680502 2.011487983 -0.064873 90 70 SH13592 13592 MT ATP8/AAP1 5' 28.792303 181.703412 28.792303 153.911109 91.351706 1.960716662 -0.093589 90 71 SH13378 13378 MT COX1 intronic 28.644299 198.271209 28.644299 170.62691 99.6356045 1.99841456 -0.187808 90 72 SH3081 3081 Ser3 101 + 3' flank 101 26.579223 144.316134 85.4476785 1.931700268 -0.211288 90 73 SH1237 1237 Ile1 3' flank 30.266885 169.332823 99.799854 1.999129906 -0.072514 90 74 SH281 281 Arg4 1-13 1 13 39.647596 154.565043 97.1063195 1.987247494 0.481099 90 75 SH2761 2761 Pro5 3' flank 29.989482 164.420496 97.204989 1.987688555 -0.062552 90 76 SH2811 2811 Pro6 3' flank 27.97879 121.118247 74.5485185 1.872439017 0.038819 90 77 SH21449 21449 copy of SH210 31.622587 186.676868 109.1497275 2.038022656 -0.108356 90 78 SH6144 6144 snR39B snR39B 61 79 31.49973 192.789535 112.1446325 2.049778492 -0.167389 90 79 SH8402 8402 snoRNA cluster 5 snR190 29.516107 208.157957 29.516107 179.64185 104.5789785 2.019444395 -0.179514 90 80 SH7775 7775 snoRNA cluster1 intergenic 29.407545 171.2615 29.407545 142.853955 86.13075 1.935158229 0.009619 90 81 SH9307 9307 RUF1 RUF1 111 129 31.157594 171.594444 101.376019 2.005935233 -0.031774 90 82 SH4772 4772 snR5 snR5 31 47 88.625204 251.490211 170.0577075 2.23059632 0.089235 90 83 SH7697 7697 snoRNA cluster1 intergenic 29.159671 156.176824 29.159671 128.017153 78.588412 1.895358513 0.07793 90 84 SH20982 20982 YML056C spliced 32.808907 189.110739 110.959823 2.045165755 -0.086096 90 85 SH14570 14570 MT 21S rRNA 21S rRNA3 40.190838 246.953299 40.190838 207.762461 123.9766495 2.093339895 -0.127803 90 86 SH8874 8874 LSR1 / U2 RNA U2 1011 1028 47.656632 171.872265 109.7644485 2.0404617 0.407834 90 87 SH5729 5729 snR34 3' 36.669931 184.424973 110.547452 2.043548737 0.077259 90 88 SH8339 8339 snoRNA cluster4 snR53 31.239738 201.601443 31.239738 171.361705 101.3007215 2.005612539 -0.025473 90 89 SH8722 8722 LSR1 / U2 RNA U2 251 268 31.377128 151.863138 91.620133 1.961990918 0.095678 90 90 SH14155 14155 MT COB intronic 29.642391 214.076767 29.642391 185.434376 107.5383835 2.031563504 -0.203776 90 91 SH611 611 Gln1 3' flank 31.635344 168.317781 99.9765625 1.9998982 0.016261 90 92 SH13200 13200 MT COX1 Exon4 29.843679 174.131195 29.843679 145.287516 87.5655975 1.942333515 0.02746 90 93 SH20566 20566 YHR010W spliced 35.565593 196.131284 115.8484385 2.063890184 -0.078406 90 94 SH7294 7294 snR66 5' 33.699581 192.405617 113.052599 2.053280551 -0.083157 90 95 SH17511 17511 YJL136C_10_156971_156248_INTRON_25_484 intron 74.523904 320.025564 74.523904 246.50166 160.512782 2.205509622 -0.028681 90 96 SH8930 8930 snR17a / U3a 5' 29.882126 150.782698 90.332412 1.955843607 0.000149 90 97 SH14773 14773 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu 36.441219 218.292193 36.441219 182.850974 109.6460965 2.039993175 0.0915 90 98 SH6072 6072 snR37 snR37 276 292 31.671922 186.398497 109.0352095 2.037566762 -0.10397 90 99 SH105 105 Arg1 5' flank 29.740317 160.427867 95.084092 1.978107864 -0.059953 90 100 SH2435 2435 Phe5 5' flank 35.335659 194.592329 114.963994 2.060561843 -0.065838 90 101 SH9822 9822 RUF5-1 5' 31.534259 167.94528 99.7397695 1.99886836 0.012529 90 102 SH11870 11870 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6236 6253 534.129111 568.664608 551.3968595 2.741464288 0.650446 90 103 SH18715 18715 YNL130C_14_381156_379555_INTRON_30_470 intron 31.473188 185.299589 31.473188 154.826401 93.1497945 1.969181901 0.086367 90 104 SH21632 21632 copy of SH7932 33.335173 177.763437 105.549305 2.023455378 0.037385 91 2 SH4225 4225 telomerase RNA telomerase 161 177 52.712701 203.062771 127.887736 2.106828899 0.098099 91 3 SH9756 9756 RUF4 RUF4 556 571 40.577278 176.320455 108.4488665 2.035225017 0.246767 91 4 SH13837 13837 MT COB Cytbi2 28.412243 181.581702 28.412243 154.169459 91.290851 1.960427256 -0.122525 91 5 SH9504 9504 RUF3 5' 34.768498 178.884216 106.826357 2.028678418 0.07721 91 6 SH10739 10739 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 581 598 32.836568 176.794103 104.8153355 2.020424829 0.028558 91 7 SH15400 15400 YBL050W_2_125087_126081_INTRON_31_146 intron 30.859995 204.84246 30.859995 174.982465 102.92123 2.012504968 -0.06958 91 8 SH20504 20504 YGR027C spliced 33.007038 150.260038 91.633538 1.962054455 0.209372 91 9 SH19352 19352 YPL249C-A_16_76239_75699_INTRON_17_254 intron 28.861159 205.694461 28.861159 177.833302 103.3472305 2.014298843 -0.211181 91 10 SH7067 7067 snR62 3' 29.892204 135.646496 82.76935 1.917869545 0.084391 91 11 SH15583 15583 YBR084C-A_2_415219_414144_INTRON_3_508 intron 28.817444 212.130685 28.817444 184.313241 106.5653425 2.027615985 -0.250378 91 12 SH12484 12484 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 30.855258 207.49674 30.855258 177.641482 104.24837 2.018069273 -0.08519 91 13 SH30 30 Ala1 tRNA 46 58 32.902712 156.210129 94.5564205 1.975691023 0.165537 91 14 SH6526 6526 snR46 snR46 121 137 60.020026 228.158026 144.089026 2.158630906 -0.054146 91 15 SH518 518 Asp2 3' flank 32.958348 177.095789 105.0270685 2.021301244 0.030116 91 16 SH1943 1943 Lys2 5' flank 28.891416 152.434152 90.662784 1.957429051 -0.078647 91 17 SH9782 9782 RUF4 RUF4 686 706 29.027971 175.673913 102.350942 2.010091844 -0.187995 91 18 SH10955 10955 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1661 1676 9063.168367 3599.338401 6331.253384 3.801489695 1.374985 91 19 SH3408 3408 Thr4 3' flank 27.249524 128.667942 77.958733 1.891864772 -0.06561 91 20 SH2927 2927 Pro8 3' flank 31.670241 171.610231 101.640236 2.007065665 -0.00136 91 21 SH2767 2767 Pro6 5' flank 27.541933 179.583675 103.562804 2.015203801 -0.310699 91 22 SH19177 19177 YPL079W_16_406631_407534_INTRON_12_432 intron 31.955327 196.08009 31.955327 165.124763 98.540045 1.993612756 0.054533 91 23 SH1375 1375 Leu1 5' flank 32.053083 195.263453 113.658268 2.055601034 -0.168043 91 24 SH11398 11398 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3876 3893 829.21167 1013.757199 921.4844345 2.964488004 0.261683 91 25 SH5897 5897 snR36 5' 32.181006 161.418555 96.7997805 1.985874373 0.090753 91 26 SH13806 13806 MT COB intronic/exon2 30.054278 219.257066 30.054278 190.202788 110.128533 2.041899854 -0.203776 91 27 SH7640 7640 snR189 3' 78.118486 250.265792 164.192139 2.215352361 -0.017238 91 28 SH6068 6068 snR37 snR37 256 275 30.108372 152.764605 91.4364885 1.961119539 0.005224 91 29 SH7837 7837 snoRNA cluster1 snR74 32.291288 195.556854 32.291288 164.265566 98.278427 1.992458197 0.079385 91 30 SH13510 13510 MT COX1 intronic 30.107961 190.316042 30.107961 161.208081 95.658021 1.980721392 -0.038386 91 31 SH13429 13429 MT COX1 intronic 30.074506 195.036321 30.074506 165.961815 98.0181605 1.991306548 -0.064236 91 32 SH8662 8662 LSR1 / U2 RNA 5' 27.8491 128.061853 77.9554765 1.89184663 -0.016936 91 33 SH216 216 Arg3 5' flank 32.083533 185.632073 108.857803 2.036859565 -0.081549 91 34 SH4138 4138 SRP RNA SRP RNA 581 597 297.361437 445.771334 371.5663855 2.570036418 0.343611 91 35 SH7372 7372 snR68 snR68 81 103 29.671899 132.758477 81.215188 1.909637254 0.085583 91 36 SH14994 14994 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 31.652513 195.932801 31.652513 165.280288 98.4664005 1.993288062 0.035778 91 37 SH13093 13093 MT COX1 COX1ai3 31.487775 198.355313 31.487775 167.867538 99.6776565 1.998597819 0.010242 91 38 SH17611 17611 YJR021C_10_469271_468247_INTRON_317_396 5' exon 31.329496 201.122216 31.329496 170.79272 101.061108 2.004584055 -0.016731 91 39 SH6628 6628 snR48 5' 29.088082 112.139571 70.6138265 1.848889746 0.182681 91 40 SH9545 9545 RUF3 RUF3 111 128 58.360864 208.174771 133.2678175 2.124725285 0.117423 91 41 SH13513 13513 MT COX1 intronic 28.891153 184.14802 28.891153 156.256867 92.57401 1.966489076 -0.09873 91 42 SH9167 9167 snR7 U5 RNA U5 106 118 32.991827 168.83771 100.9147685 2.003954728 0.091613 91 43 SH18966 18966 YOR096W_15_505793_506766_INTRON_145_545 5' exon 30.862077 210.482204 30.862077 180.620127 105.741102 2.024243832 -0.101672 91 44 SH9274 9274 RUF1 5' 30.825935 180.118096 105.4720155 2.023137245 -0.101034 91 45 SH5171 5171 snR13 snR13 11 32 28.719314 128.441632 78.580473 1.895314639 0.043892 91 46 SH9118 9118 snR14 / U4 RNA 3' 30.755975 179.189588 104.9727815 2.021076705 -0.100031 91 47 SH7638 7638 snR189 3' 32.783089 195.558666 114.1708775 2.057555339 -0.143616 91 48 SH14855 14855 MT tRNA Ser2; tRNA Arg2 5' / tRNA Ser 30.666918 198.55333 30.666918 168.886412 99.776665 1.999028984 -0.045286 91 49 SH3494 3494 Tyr1 tRNA 11 27 49.232376 171.669565 110.4509705 2.043169536 0.430053 91 50 SH7359 7359 snR68 snR68 16 34 30.577911 114.5001 72.5390055 1.860571597 0.268082 91 51 SH19826 19826 Negative Control 28.486498 155.433027 91.9597625 1.963597841 -0.12372 91 52 SH671 671 Gln2 3' flank 30.516057 171.784355 101.150206 2.004966772 -0.071791 91 53 SH1588 1588 Leu4 111-114 + 3' flank 111 28.439281 148.759505 88.599393 1.947430747 -0.092461 91 54 SH18585 18585 YNL050C_14_534978_534075_INTRON_18_108 exon/intron 30.466937 183.576324 30.466937 154.109387 92.288162 1.965145997 0.022693 91 55 SH14776 14776 MT ORF11; tRNA Leu; tRNA Gln intergenic / tRNA Gln 30.43106 223.440869 30.43106 194.009809 112.2204345 2.050071946 -0.219383 91 56 SH10025 10025 RUF6 5' 34.475055 183.822702 109.1488785 2.038019278 0.021102 91 57 SH4417 4417 telomerase RNA telomerase 1121 1137 34.392817 162.591802 98.4923095 1.993402321 0.207655 91 58 SH21730 21730 copy of SH12130 31.231626 156.379481 93.8055535 1.97222855 0.062292 91 59 SH1161 1161 His1 tRNA 26 40 30.105598 168.187659 99.1466285 1.996277951 -0.075607 91 60 SH8005 8005 snoRNA cluster 2 intergenic 29.989047 161.946076 29.989047 132.957029 81.473038 1.911013911 0.106809 91 61 SH4753 4753 snR5 5' 36.924534 167.522173 102.2233535 2.009550124 0.260019 91 62 SH15949 15949 YDL125C_4_239605_239018_INTRON_98_208 intron/exon 31.762631 208.751029 31.762631 177.988398 104.8755145 2.020674104 -0.032991 91 63 SH13295 13295 MT COX1 COX1-ai5a 29.648424 195.960482 29.648424 167.312058 98.480241 1.993349103 -0.100412 91 64 SH20364 20364 YER131W spliced 91.710626 249.200489 170.4555575 2.231611165 0.138857 91 65 SH21862 21862 copy of SH18012 30.433609 176.177401 103.305505 2.014123465 -0.102504 91 66 SH9303 9303 RUF1 RUF1 91 108 31.310823 176.262292 103.7865575 2.016141107 -0.049872 91 67 SH7399 7399 snR68 3' 29.21682 169.104002 99.160411 1.996338318 -0.139475 91 68 SH5676 5676 snR34 snR34 301 320 30.067245 171.763611 100.915428 2.003957566 -0.099366 91 69 SH15784 15784 YDL029W_4_399336_400634_INTRON_23_145 exon/intron 28.945006 177.219637 28.945006 149.274631 89.1098185 1.949925559 -0.058032 91 70 SH11588 11588 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4826 4839 198.970317 332.702968 265.8366425 2.424614843 0.39152 91 71 SH2157 2157 Met2 5' flank 28.63146 166.428086 97.529773 1.989137213 -0.168554 91 72 SH14617 14617 MT 21S rRNA Sce1 endonuc 30.388098 208.62687 30.388098 179.238772 104.813435 2.020416954 -0.122805 91 73 SH11964 11964 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6706 6724 28.312897 151.149882 89.7313895 1.952944393 -0.114264 91 74 SH13239 13239 MT COX1 COX1-ai4 28.165139 141.494913 28.165139 114.329774 71.2474565 1.852769365 0.10042 91 75 SH20731 20731 YJL189W spliced 45.062943 198.060495 121.561719 2.084796833 0.051033 91 76 SH21366 21366 Leu1_5 spliced 29.786417 159.670179 94.728298 1.976479734 -0.052903 91 77 SH15515 15515 YBR048W_2_332790_333771_INTRON_46_556 intron 283.102911 706.2708 283.102911 424.167889 353.6354 2.548555733 0.369494 91 78 SH5524 5524 snR33 5' 67.043376 237.458176 152.250776 2.182559515 -0.044763 91 79 SH6579 6579 snR47 snR47 1 22 26.663153 120.773363 73.718258 1.867575064 -0.057729 91 80 SH13264 13264 MT COX1 COX1-ai4 31.205213 199.128411 31.205213 168.923198 100.0642055 2.000278751 -0.012979 91 81 SH4728 4728 snR4 176-186 + 3' 176 29.262878 137.745772 83.504325 1.92170897 0.027609 91 82 SH6637 6637 snR48 snR48 11 30 68.061054 197.187453 132.6242535 2.122622952 0.35035 91 83 SH3454 3454 Trp1 101-106 + 3' falnk 101 26.380686 115.897223 71.1389545 1.852107478 -0.045148 91 84 SH6475 6475 snR45 3' 27.28026 142.538491 84.9093755 1.928955647 -0.1468 91 85 SH18503 18503 YMR194W_13_651144_651909_INTRON_17_479 intron 31.89278 200.958794 31.89278 170.066014 100.979397 2.004232773 0.020913 91 86 SH12476 12476 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 2573.755303 4596.983917 2573.755303 2024.228614 2298.991959 3.361537452 0.641929 91 87 SH13539 13539 MT COX1 intronic 31.123431 186.26546 31.123431 156.142029 93.63273 1.971427686 0.056321 91 88 SH21824 21824 copy of SH16119 31.244982 153.538497 92.3917395 1.965633144 0.078032 91 89 SH18466 18466 YMR143W_13_551927_552902_INTRON_25_568 intron 33.245945 228.783858 33.245945 196.537913 114.891929 2.060289521 -0.13525 91 90 SH2054 2054 Lys4 5' flank 29.643931 146.673606 88.1587685 1.945265515 0.005917 91 91 SH1910 1910 Lys1 tRNA 6 18 56.146277 220.761387 138.453832 2.14130498 -0.036771 91 92 SH14648 14648 MT 21S rRNA intronic 29.843581 225.787297 29.843581 196.943716 113.3936485 2.054588729 -0.268063 91 93 SH11224 11224 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3006 3027 31.787982 179.023736 105.405859 2.022864752 -0.037393 91 94 SH12451 12451 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 54.562677 234.72694 54.562677 181.164263 117.86347 2.071379223 0.373214 91 95 SH6218 6218 snR40 3' 29.920576 162.245837 96.0832065 1.982647488 -0.05654 91 96 SH14701 14701 MT tRNA thr2 5' / tRNA 29.894632 190.032551 29.894632 161.137919 95.5162755 1.98007738 -0.05279 91 97 SH2601 2601 Pro3 5' flank 29.854429 151.969698 90.9120635 1.958621515 -0.008128 91 98 SH19836 19836 Negative Control 35.461729 185.305773 110.383751 2.042905148 0.041346 91 99 SH5700 5700 snR34 snR34 421 438 31.642538 161.36956 96.506049 1.984554536 0.059517 91 100 SH2046 2046 Lys3 3' flank 31.599279 158.362952 94.9811155 1.977637266 0.076068 91 101 SH14869 14869 MT tRNA Ser2; tRNA Arg2 3' 29.684543 165.475009 29.684543 136.790466 83.2375045 1.920319051 0.063164 91 102 SH20525 20525 YGR118W spliced 35.304194 195.672298 115.488246 2.062537785 -0.078522 91 103 SH13355 13355 MT COX1 intronic 31.520401 186.650311 31.520401 156.12991 93.8251555 1.972319293 0.082686 91 104 SH21437 21437 TH204 - control oligo; WTP_219 31.508744 173.322387 102.4155655 2.010365967 -0.021004 92 2 SH15180 15180 MT COX3 cox3 44.86516 244.832924 44.86516 200.967764 122.916462 2.089610051 0.015452 92 3 SH198 198 Arg2 3' flank 28.479834 144.13342 86.306627 1.936044144 -0.064841 92 4 SH4270 4270 telomerase RNA telomerase 386 405 26.557762 132.348844 79.453303 1.900111956 -0.141871 92 5 SH5499 5499 snR32 snR32 156 173 262.418102 543.220677 402.8193895 2.605110367 -0.13987 92 6 SH17119 17119 YHR010W_8_126513_127484_INTRON_32_592 intron 28.860742 204.25635 28.860742 176.395608 102.628175 2.011266606 -0.202961 92 7 SH190 190 Arg2 66-73 + 3' flank 66 3' flank 125.229679 243.125564 184.1776215 2.26523686 0.486374 92 8 SH1089 1089 Gly4 5' flank 63.646649 240.239167 151.942908 2.181680434 -0.112794 92 9 SH11985 11985 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6811 6829 73.132231 207.904378 140.5183045 2.147732901 0.2995 92 10 SH2877 2877 Pro8 5' flank 36.255556 153.112892 94.684224 1.976277624 0.367285 92 11 SH11796 11796 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5866 5884 4899.29701 4037.521193 4468.409102 3.650152928 0.39503 92 12 SH16368 16368 YEL012W_5_131772_132551_INTRON_6_128 3' exon 30.909008 179.699939 30.909008 149.790931 90.3499695 1.95592801 0.075613 92 13 SH1371 1371 Leu1 5' flank 30.864196 152.706795 91.7854955 1.962774057 0.056984 92 14 SH18244 18244 YML026C_13_223828_222987_INTRON_48_448 3' exon 28.777629 158.228046 28.777629 130.450417 79.614023 1.90098957 0.035202 92 15 SH16879 16879 YGL189C_7_148970_148233_INTRON_1_368 5' exon 30.898321 193.064501 30.898321 163.16618 97.0322505 1.986916104 0.003775 92 16 SH18618 18618 YNL069C_14_494998_493953_INTRON_29_477 3' exon 35.177241 194.91006 35.177241 160.732819 97.95503 1.991026742 0.261496 92 17 SH20910 20910 YLR333C spliced 33.246649 171.905277 102.575963 2.011045603 0.087703 92 18 SH4012 4012 SRP RNA 5' 31.332398 152.107671 91.7200345 1.962464209 0.091414 92 19 SH7184 7184 snR64 5' - 2 -14 2 94.655055 265.458732 180.0568935 2.255409753 0.046642 92 20 SH13416 13416 MT COX1 intronic 31.72384 169.172046 31.72384 138.448206 85.086023 1.929858225 0.193404 92 21 SH14451 14451 MT 21S rRNA 21S rRNA3 962.591975 2538.228643 962.591975 1576.636668 1269.614322 3.103671813 -0.254687 92 22 SH1275 1275 Ile2 tRNA-intron 71 86 32.029478 163.244828 97.637153 1.989615107 0.070499 92 23 SH3742 3742 Val4 5' flank 27.806741 147.379024 87.5928825 1.942468818 -0.132567 92 24 SH25 25 Ala1 tRNA 21 33 32.206632 173.269097 102.7378645 2.011730534 0.020262 92 25 SH13918 13918 MT COB Cytbi3 30.085719 195.047544 30.085719 165.961825 98.023772 1.99133141 -0.063462 92 26 SH13674 13674 MT ATP6 3' 30.117637 199.368888 30.117637 170.251251 100.184444 2.000800292 -0.08725 92 27 SH13396 13396 MT COX1 intronic 30.136709 186.683299 30.136709 157.54659 93.8416495 1.972395633 -0.017793 92 28 SH10914 10914 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1456 1469 34.495654 179.705957 107.1008055 2.029792737 0.060039 92 29 SH9939 9939 RUF5-1 RUF5-1 501 517 30.133345 141.01059 85.5719675 1.932331518 0.071089 92 30 SH14441 14441 MT 21S rRNA 21S rRNA3 30.104445 196.553291 30.104445 167.448846 98.7766455 1.994654273 -0.071206 92 31 SH14831 14831 "MT tRNAs (Lys, Arg1, Gly)" 3' 27.885399 146.0847 27.885399 119.199301 73.54235 1.866537503 0.045179 92 32 SH5914 5914 snR36 snR36 26 43 74.537587 248.425823 161.481705 2.208123326 -0.044064 92 33 SH9723 9723 RUF4 RUF4 391 406 34.189583 194.462369 114.325976 2.058144918 -0.08771 92 34 SH20050 20050 YBR191W spliced 37.276913 181.384539 109.330726 2.038742232 0.125079 92 35 SH7065 7065 snR62 3' 103.794846 314.31243 209.053638 2.32025773 -0.185879 92 36 SH15862 15862 YDL079C_4_314747_312950_INTRON_413_704 intron 33.732167 237.065241 33.732167 204.333074 119.0326205 2.075665995 -0.205073 92 37 SH3795 3795 RNaseP 5' flank 31.450695 171.836393 101.643544 2.007079799 -0.015703 92 38 SH758 758 Gln4 61-72 + 3' flank 61 43.978923 180.614848 112.2968855 2.050367711 0.246252 92 39 SH21556 21556 copy of SH4782 33.283151 148.348069 90.81561 1.958160504 0.237034 92 40 SH8378 8378 snoRNA cluster 5 5' 28.989253 201.189842 28.989253 173.200589 101.094921 2.004729337 -0.176084 92 41 SH14759 14759 MT ORF11; tRNA Leu; tRNA Gln ORF11 33.095868 187.494571 33.095868 155.398703 94.2472855 1.974268851 0.18177 92 42 SH212 212 Arg3 5' flank 26.790521 147.037692 86.9141065 1.93909027 -0.209171 92 43 SH17507 17507 YJL136C_10_156971_156248_INTRON_25_484 intron 51.816979 270.296162 51.816979 219.479183 135.648081 2.132413654 -0.084552 92 44 SH19915 19915 YAL003W spliced 32.992245 152.868882 92.9305635 1.968158571 0.192584 92 45 SH14 14 Ala1 5' flank 30.895672 177.760209 104.3279405 2.018400634 -0.083422 92 46 SH7453 7453 snR69 3' 30.878923 171.547979 101.213451 2.005238233 -0.048294 92 47 SH10663 10663 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 201 218 37.096834 205.001152 121.048993 2.082961181 -0.145303 92 48 SH16740 16740 YGL076C_7_365994_364333_INTRON_565_1032 intron 232.413748 579.345548 232.413748 347.9318 290.172774 2.462656662 0.485386 92 49 SH6744 6744 snR49 3' 30.788494 158.822916 94.805705 1.976834472 0.020076 92 50 SH12699 12699 MT ORF 8 (hypothetical) ORF8 30.748106 187.419556 30.748106 157.67145 94.209778 1.97409598 0.023246 92 51 SH6878 6878 snR56 snR56 21 38 106.539594 299.483708 203.011651 2.307520963 -0.068555 92 52 SH1232 1232 Ile1 3' flank 28.594036 166.628266 97.611151 1.989499434 -0.172243 92 53 SH6501 6501 snR46 5' - 12 -4 12 30.605836 160.27099 95.438413 1.979723209 0.000374 92 54 SH16457 16457 YER074W-A_0_5_307649_INTRON_95_196 intron/exon 36.72163 231.364951 36.72163 195.643321 116.1824755 2.065140626 -0.05035 92 55 SH15071 15071 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.465342 215.415927 30.465342 185.950585 108.2079635 2.034259224 -0.155409 92 56 SH19439 19439 YPR187W_16_911252_911795_INTRON_21_96 exon/intron 934.354282 2129.725175 934.354282 1196.370893 1065.362588 3.027497442 0.147724 92 57 SH20446 20446 YGL103W spliced 34.339628 158.956466 96.648047 1.985193083 0.227736 92 58 SH11553 11553 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4651 4669 285.597133 410.951155 348.274144 2.541921233 0.433861 92 59 SH17660 17660 YKL002W_11_437416_438182_INTRON_61_128 intron/exon 30.004319 163.958604 30.004319 134.954285 82.479302 1.916344977 0.096262 92 60 SH2727 2727 Pro5 tRNA 16 32 145.572577 227.633906 186.6032415 2.270919184 0.760623 92 61 SH8605 8605 snR19 / U1 RNA U1 521 536 108.250709 264.146068 186.1983885 2.269975918 0.185787 92 62 SH3263 3263 Thr2 5' flank 29.64968 117.763317 73.7064985 1.86750578 0.181394 92 63 SH7205 7205 snR64 91-101 + 3' 91 33.542041 161.791304 97.6666725 1.989746392 0.165845 92 64 SH6860 6860 snR56 5' 27.485838 118.126533 72.8061855 1.862168278 0.023081 92 65 SH15698 15698 YBR220C_2_663261_662457_INTRON_302_722 intron 29.386465 178.247667 29.386465 149.861202 89.6238335 1.952423516 -0.029598 92 66 SH5279 5279 snR30 snR30 246 262 33.244491 166.130027 99.687259 1.998639655 0.122301 92 67 SH3357 3357 Thr3 3' flank 31.155102 168.658083 99.9065925 1.999594147 -0.014387 92 68 SH18539 18539 YMR230W_13_732413_733140_INTRON_53_462 intron 31.021406 214.138123 31.021406 184.116717 107.5690615 2.03168738 -0.111526 92 69 SH5877 5877 snR35 3' 41.605549 181.787865 111.696707 2.04804037 0.197965 92 70 SH11135 11135 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2561 2574 38.458966 186.454657 112.4568115 2.050985766 0.087123 92 71 SH17850 17850 YKR094C_11_618384_617630_INTRON_9_376 3' exon 36.300238 234.901469 36.300238 199.601231 117.9507345 2.07170065 -0.102135 92 72 SH18443 18443 YMR142C_13_551206_550205_INTRON_5_406 intron 30.33034 203.406666 30.33034 174.076326 102.203333 2.009465059 -0.096668 92 73 SH1318 1318 Ile3 5' flank 30.152365 179.981012 105.0666885 2.021465044 -0.141561 92 74 SH13719 13719 MT tRNAGlu (and 5' processing site for COB) 3' 29.987455 213.153156 29.987455 184.165701 107.076578 2.029694483 -0.175166 92 75 SH18083 18083 YLR344W_12_819312_820142_INTRON_20_466 intron 37.384918 205.719125 37.384918 169.334207 103.3595625 2.014350662 0.256708 92 76 SH14551 14551 MT 21S rRNA 21S rRNA3 29.710107 186.577791 29.710107 157.867684 93.7888955 1.972151421 -0.04903 92 77 SH9924 9924 RUF5-1 RUF5-1 426 445 29.596288 186.751598 108.173943 2.03412266 -0.213878 92 78 SH21500 21500 copy of SH2550 31.357147 196.363057 113.860102 2.056371569 -0.203815 92 79 SH4555 4555 U3b (snR17b) U3b 331 348 29.401857 172.431688 100.9167725 2.003963353 -0.145144 92 80 SH19320 19320 YPL198W_16_173151_174701_INTRON_12_420 3' exon 29.316788 205.353201 29.316788 177.036413 103.1766005 2.013581214 -0.177337 92 81 SH19336 19336 YPL241C_16_96258_95372_INTRON_26_105 exon/intron 61.672881 272.251826 61.672881 211.578945 136.625913 2.135533077 0.124816 92 82 SH20393 20393 YFL039C spliced 40.249397 176.292962 108.2711795 2.034512868 0.241367 92 83 SH2276 2276 Phe2 5' flank 27.302388 140.047876 83.675132 1.922596406 -0.131355 92 84 SH14028 14028 MT COB Exon4 29.13004 151.18211 29.13004 123.05207 76.091055 1.881333606 0.108622 92 85 SH14282 14282 MT VAR1 includes 5’ processing site VAR1 29.152404 202.618992 29.152404 174.466588 101.809496 2.007788288 -0.172992 92 86 SH8449 8449 snoRNA cluster 5 snR128 31.976383 211.637332 31.976383 180.660949 106.318666 2.026609519 -0.039751 92 87 SH17194 17194 YHR021C_8_148660_147862_INTRON_4_553 intron 29.297913 210.353996 29.297913 182.056083 105.676998 2.023980468 -0.206948 92 88 SH11431 11431 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4041 4058 392.94178 560.326192 476.633986 2.678185006 0.29698 92 89 SH20596 20596 YHR039C-A spliced 31.3979 193.806147 112.6020235 2.051546195 -0.180142 92 90 SH2961 2961 Ser1 tRNA 36 53 31.527716 152.057663 91.7926895 1.962808095 0.104577 92 91 SH20066 20066 YBR230C spliced 31.643172 192.330377 111.9867745 2.049166736 -0.157922 92 92 SH1481 1481 Leu2 3' flank 50.635919 218.510537 134.573228 2.12895867 -0.090682 92 93 SH13127 13127 MT COX1 COX1ai3 31.795017 187.19071 31.795017 156.395693 94.095355 1.973568185 0.099311 92 94 SH2747 2747 Pro5 3' flank 29.933854 146.216119 88.0749865 1.944852585 0.028651 92 95 SH11161 11161 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2691 2716 29.933647 169.217451 99.575549 1.99815271 -0.092517 92 96 SH8132 8132 snoRNA cluster 3; snR41 31.800206 198.134781 31.800206 167.334575 99.5673905 1.998117125 0.03193 92 97 SH14888 14888 MT tRNA Ala 3' 29.873468 191.252679 29.873468 162.379211 96.1263395 1.982842405 -0.060476 92 98 SH21709 21709 copy of SH11289 44.935111 202.810103 123.872607 2.092975278 -0.00409 92 99 SH17010 17010 YGR148C_7_788173_787307_INTRON_1_392 intron 41.094678 248.398274 41.094678 208.303596 124.699137 2.095863448 -0.120401 92 100 SH9558 9558 RUF3 RUF3 176 192 1772.944901 1724.20604 1748.575471 3.242684382 0.400966 92 101 SH9791 9791 RUF4 RUF4 731 748 41.956957 182.145831 112.051394 2.049417264 0.198716 92 102 SH482 482 Asp2 5' flank 37.221355 189.449915 113.335635 2.054366482 0.029273 92 103 SH16184 16184 YDR367W_4_1212837_1213603_INTRON_31_131 intron 31.554504 200.292381 31.554504 169.737877 100.6461905 2.002797341 0.002942 92 104 SH8801 8801 LSR1 / U2 RNA U2 646 658 35.337301 188.213862 111.7755815 2.048346938 0.00678 93 2 SH16589 16589 YFL034C-A_6_64931_64242_INTRON_13_333 intron 36.901375 205.878325 36.901375 169.97695 103.4391625 2.014684996 0.23472 93 3 SH15795 15795 YDL061C_4_341182_340627_INTRON_1_408 exon/intron 28.720838 194.596518 28.720838 166.87568 97.798259 1.990331124 -0.164262 93 4 SH11984 11984 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6806 6823 1230.933289 672.187024 951.5601565 2.978436249 1.427108 93 5 SH7410 7410 snR69 5' 33.159267 137.981426 85.5703465 1.932323291 0.28798 93 6 SH6207 6207 snR40 96-97 + 3' 96 29.047695 135.094596 82.0711455 1.914190495 0.02721 93 7 SH17190 17190 YHR021C_8_148660_147862_INTRON_4_553 intron 30.150307 193.684638 30.150307 164.534331 97.342319 1.988301688 -0.052014 93 8 SH10024 10024 RUF6 5' 33.324069 170.442044 101.8830565 2.008101965 0.100736 93 9 SH2330 2330 Phe3 5' flank 29.098445 171.604465 100.351455 2.001523674 -0.159791 93 10 SH3797 3797 RNaseP 5' flank 33.247364 151.326936 92.28715 1.965141234 0.217284 93 11 SH12291 12291 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.459639 191.280995 39.459639 152.821356 96.1404975 1.982906365 0.494551 93 12 SH1461 1461 Leu2 tRNA 76 92 1352.608891 1403.357667 1377.983279 3.139243948 0.371718 93 13 SH4558 4558 U3b (snR17b) U3b 346 363 28.854726 134.27352 81.564123 1.911499171 0.017924 93 14 SH46 46 Ala1 3' flank 30.915796 161.749562 96.332679 1.983773638 0.013692 93 15 SH10570 10570 RUF8 RUF8 776 792 33.032183 130.357379 81.694781 1.912194313 0.325751 93 16 SH17160 17160 YHR016C_8_138446_136872_INTRON_48_215 exon/intron 35.221267 205.20911 35.221267 170.987843 103.104555 2.013277852 0.168892 93 17 SH11635 11635 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5061 5078 152.89797 309.365308 231.131639 2.363859399 0.239924 93 18 SH7721 7721 snoRNA cluster1 snR77 58.928271 263.842044 58.928271 205.913773 132.421022 2.121956935 0.147988 93 19 SH7814 7814 snoRNA cluster1 intergenic 31.560577 225.976763 31.560577 195.416186 113.4883815 2.054951402 -0.187912 93 20 SH21842 21842 copy of SH17172 44.611939 180.476002 112.5439705 2.051322233 0.256586 93 21 SH18808 18808 YNL301C_14_64561_63569_INTRON_113_544 3' exon 29.774572 170.436616 29.774572 141.662044 85.718308 1.93307359 0.042271 93 22 SH7319 7319 snR66 86 + 3' 86 29.90343 149.858472 89.880951 1.953667659 0.006608 93 23 SH4072 4072 SRP RNA SRP RNA 251 267 77.899497 178.269834 128.0846655 2.107497138 0.669211 93 24 SH6465 6465 snR45 171-172 + 3' 171 27.898118 112.692189 70.2951535 1.846925384 0.092938 93 25 SH14020 14020 MT COB Exon4 27.93847 155.033715 27.93847 128.095245 78.0168575 1.892188453 -0.010562 93 26 SH2899 2899 Pro8 tRNA 16 32 100.19918 235.992478 168.095829 2.225556937 0.328324 93 27 SH3794 3794 RNaseP 5' flank 32.320315 183.253959 107.787137 2.032566937 -0.050983 93 28 SH12135 12135 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7561 7574 32.313865 168.194979 100.254422 2.001103537 0.056673 93 29 SH19664 19664 SIR1 2.4 30.115782 155.549931 92.8328565 1.967701714 -0.008903 93 30 SH13229 13229 MT COX1 COX1-ai4 30.073555 207.061337 30.073555 177.987782 104.0306685 2.017161389 -0.135139 93 31 SH4691 4691 snR4 5' - 8 8 32.175708 166.846918 99.511313 1.997872457 0.05684 93 32 SH9477 9477 RUF2 RUF2 226 241 34.245284 162.518272 98.381778 1.992914667 0.200079 93 33 SH1816 1816 Leu8 3' flank 27.66937 103.650193 65.6597815 1.817299433 0.145914 93 34 SH1465 1465 Leu2 tRNA 96 112 71.686431 214.342729 143.01458 2.155380315 0.220488 93 35 SH5535 5535 snR33 5' 31.70227 139.100344 85.401307 1.931464517 0.188185 93 36 SH16855 16855 YGL183C_7_157071_156547_INTRON_4_86 3' exon 40.069001 230.351566 40.069001 191.282565 115.675783 2.063242448 0.059236 93 37 SH20886 20886 YLR275W spliced 29.304838 134.494628 81.899733 1.913282486 0.049241 93 38 SH18050 18050 YLR333C_12_796335_795573_INTRON_1_423 intron 31.293256 192.99767 31.293256 162.704414 96.998835 1.986766518 0.030398 93 39 SH20934 20934 YLR406C spliced 35.389167 174.014959 104.702063 2.019955239 0.144976 93 40 SH1193 1193 Ile1 5' flank 29.009997 173.45882 101.2344085 2.00532815 -0.176261 93 41 SH16398 16398 YER056C-A_5_270183_269421_INTRON_38_434 5' exon 28.958075 185.87296 28.958075 157.914885 93.43648 1.970516469 -0.102479 93 42 SH1878 1878 Leu9 3' flank 31.018049 159.347159 95.182604 1.978557582 0.032822 93 43 SH9304 9304 RUF1 RUF1 96 112 31.007959 167.720545 99.364252 1.997230168 -0.017574 93 44 SH14105 14105 MT COB Cytbi4 26.836104 148.592982 26.836104 122.756878 74.796491 1.873881224 -0.058077 93 45 SH12085 12085 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7311 7328 49.869245 233.109051 141.489148 2.150723131 -0.242471 93 46 SH5765 5765 snR35 snR35 11 28 33.110496 172.780414 102.945455 2.012607177 0.074872 93 47 SH14791 14791 "MT tRNAs (Lys, Arg1, Gly)" 5' 33.104335 207.750884 33.104335 175.646549 104.375442 2.018598328 0.049276 93 48 SH10566 10566 RUF8 RUF8 756 771 41.45243 160.151496 100.801963 2.00346899 0.471341 93 49 SH16790 16790 YGL103W_7_310965_311925_INTRON_50_560 intron 30.966136 203.33652 30.966136 173.370384 102.16826 2.009315997 -0.053758 93 50 SH14200 14200 MT COB Exon6 30.922676 221.060579 30.922676 191.137903 111.0302895 2.045441472 -0.175019 93 51 SH18811 18811 YNL302C_14_62942_61957_INTRON_21_571 exon/intron 30.866629 192.707264 30.866629 162.840635 96.853632 1.986115911 0.003886 93 52 SH3322 3322 Thr3 5' flank 28.723824 137.78546 83.254642 1.920408458 -0.011773 93 53 SH17926 17926 YLR078C_12_286560_285737_INTRON_4_92 intron 28.646072 177.297664 28.646072 149.651592 89.148832 1.950115658 -0.081862 93 54 SH9596 9596 RUF3 RUF3 366 387 27.523342 112.822322 70.172832 1.846169004 0.064244 93 55 SH9630 9630 RUF4 5' 30.499192 168.617854 99.558523 1.998078445 -0.053921 93 56 SH10536 10536 RUF8 RUF8 606 623 36.510582 203.90178 120.206181 2.0799268 -0.144474 93 57 SH19364 19364 YPR028W_16_623522_624197_INTRON_52_184 intron 32.259129 233.706165 32.259129 202.447036 117.3530825 2.069494502 -0.221333 93 58 SH9507 9507 RUF3 5' 112.391551 282.19958 197.2955655 2.295117324 0.097024 93 59 SH15436 15436 YBL072C_2_89435_88518_INTRON_1_308 intron 31.937249 213.790522 31.937249 182.853273 107.395261 2.030985118 -0.061572 93 60 SH6421 6421 snR45 5' 31.787832 165.114523 98.4511775 1.993220915 0.044772 93 61 SH3335 3335 Thr3 tRNA 21 35 31.656421 156.918 94.2872105 1.974452787 0.087544 93 62 SH12891 12891 MT COX1 COX1ai1 29.553971 217.506234 29.553971 188.952263 109.253117 2.038433836 -0.228455 93 63 SH18849 18849 YNL312W_14_48286_49215_INTRON_8_115 3' exon 30.461298 208.379987 30.461298 178.918689 104.6899935 2.019905173 -0.116491 93 64 SH9097 9097 snR14 / U4 RNA U4 101 115 33.357176 179.459543 106.4083595 2.026975748 0.022151 93 65 SH2717 2717 Pro5 5' flank 29.31929 126.676894 77.998092 1.892083979 0.09788 93 66 SH5235 5235 snR30 snR30 26 41 6071.111811 4249.29047 5160.201141 3.71266663 0.59196 93 67 SH15018 15018 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.133223 195.573192 29.133223 167.439969 98.286596 1.992494294 -0.13741 93 68 SH21790 21790 copy of SH14650 153.003823 366.488301 259.746062 2.414548972 -0.068283 93 69 SH20159 20159 YDL130W spliced 30.804489 187.345104 109.0747965 2.037724411 -0.145785 93 70 SH12396 12396 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.626282 160.788723 30.626282 131.162441 80.8943615 1.907918251 0.161683 93 71 SH4 4 Ala1 5' flank 30.436481 169.980543 100.208512 2.000904613 -0.065947 93 72 SH16286 16286 YDR450W_4_1359912_1360787_INTRON_48_482 5' exon 29.290493 184.124817 29.290493 155.834324 92.5624085 1.966434647 -0.068048 93 73 SH10718 10718 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 476 493 33.861794 172.990724 103.426259 2.014630816 0.102087 93 74 SH21324 21324 YPR028W spliced 29.897123 162.338139 96.117631 1.982803058 -0.058628 93 75 SH10978 10978 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1776 1794 1035.158755 966.784235 1000.971495 3.00042171 0.620865 93 76 SH13724 13724 MT COB 5' 27.760471 175.62254 27.760471 148.862069 88.31127 1.94601613 -0.143878 93 77 SH12581 12581 MT_15S MT_15S 32.325174 201.683717 32.325174 170.358543 101.3418585 2.005788865 0.044342 93 78 SH14989 14989 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.368431 222.021757 30.368431 192.653326 111.5108785 2.047317237 -0.210011 93 79 SH12921 12921 MT COX1 COX1ai2 31.214547 185.44187 31.214547 155.227323 93.220935 1.969513455 0.067147 93 80 SH16164 16164 YDR139C_4_733917_733611_INTRON_150_222 5' exon 38.547113 228.183229 38.547113 190.636116 114.5916145 2.059152838 0.04044 93 81 SH12511 12511 MT_ORF6 + ORF7 (hypothetical) 5' 29.228314 168.792831 29.228314 140.564517 84.8964155 1.928889354 0.009334 93 82 SH15875 15875 YDL082W_4_308423_309387_INTRON_5_369 exon/intron 31.021837 197.883165 31.021837 167.861328 99.4415825 1.997568027 -0.01759 93 83 SH12021 12021 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6991 7008 45.747586 190.027172 117.887379 2.071467312 0.153824 93 84 SH19420 19420 YPR132W_16_794960_795762_INTRON_66_430 intron 29.145971 207.493292 29.145971 179.347321 104.246646 2.018062091 -0.201437 93 85 SH14779 14779 MT ORF11; tRNA Leu; tRNA Gln tRNA Gln 31.013968 184.17857 31.013968 154.164602 92.589285 1.96656073 0.059334 93 86 SH2789 2789 Pro6 tRNA-exon/intron 36 48 32.92178 157.168686 95.045233 1.97793034 0.160404 93 87 SH7672 7672 snoRNA cluster1 snR78 27.465267 154.528275 27.465267 128.063008 77.7641375 1.89077936 -0.045486 93 88 SH17997 17997 YLR287C-A_12_713158_712537_INTRON_4_433 intron 27.564986 178.470744 27.564986 151.905758 89.735372 1.952963668 -0.174534 93 89 SH14862 14862 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 28.606655 198.994989 28.606655 171.388334 99.9974945 1.999989119 -0.194144 93 90 SH12875 12875 MT COX1 COX1ai1 31.528098 233.482567 31.528098 202.954469 117.2412835 2.069080564 -0.253016 93 91 SH6658 6658 snR48 3' 31.639892 189.740445 110.6901685 2.044109049 -0.135169 93 92 SH11194 11194 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2856 2876 27.96228 121.452592 74.707436 1.873363831 0.035321 93 93 SH12187 12187 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7821 7838 28.018333 144.518652 86.2684925 1.935852209 -0.101328 93 94 SH4775 4775 snR5 snR5 46 60 41.296246 180.181767 110.7390065 2.044300623 0.212013 93 95 SH14286 14286 MT VAR1 includes 5’ processing site VAR1 29.943009 197.708231 29.943009 168.765222 99.3541155 1.997185861 -0.089214 93 96 SH471 471 Asp2 5' flank 33.706327 174.249987 103.978157 2.016942115 0.084335 93 97 SH18838 18838 YNL302C_14_62942_61957_INTRON_21_571 intron 29.890825 163.480402 29.890825 134.589577 82.240201 1.915084163 0.090389 93 98 SH21037 21037 YMR125W spliced 44.962246 208.092346 126.527296 2.102184227 -0.061556 93 99 SH16209 16209 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 31.683795 192.192982 31.683795 161.509187 96.596491 1.98496135 0.061074 93 100 SH14803 14803 "MT tRNAs (Lys, Arg1, Gly)" intergenic 29.757784 190.221538 29.757784 161.463754 95.610769 1.980506811 -0.063948 93 101 SH10279 10279 RUF7 RUF7 6 23 35.373271 194.999244 115.1862575 2.061400668 -0.069635 93 102 SH4411 4411 telomerase RNA telomerase 1091 1109 29.700801 136.050383 82.875592 1.918426644 0.068545 93 103 SH4918 4918 snR9 5' - 13 13 37.241735 181.975679 109.608707 2.039845055 0.117324 93 104 SH9694 9694 RUF4 RUF4 246 266 29.68562 156.088732 92.887176 1.967955759 -0.041561 94 2 SH13584 13584 MT COX1 Exon 6 63.701852 300.947313 63.701852 238.245461 150.9736565 2.178901174 -0.095121 94 3 SH12795 12795 MT COX1 COX1ai1 30.008213 181.462787 30.008213 152.454574 91.2313935 1.960144308 -0.000046 94 4 SH12605 12605 MT_15S MT_15S 29.076158 190.914321 29.076158 162.838163 95.9571605 1.982077388 -0.118904 94 5 SH13015 13015 MT COX1 COX1ai2 29.171498 191.833081 29.171498 163.661583 96.4165405 1.984151545 -0.116196 94 6 SH8276 8276 snoRNA cluster4 snR67/intergenic 31.353913 213.227469 31.353913 182.873556 107.1137345 2.029845161 -0.084712 94 7 SH19421 19421 YPR132W_16_794960_795762_INTRON_66_430 intron 35.628522 221.152776 35.628522 186.524254 111.076388 2.045621749 0.032226 94 8 SH14264 14264 MT VAR1 includes 5’ processing site 5' / var1 29.280711 204.444219 29.280711 176.163508 102.7221095 2.011663929 -0.174617 94 9 SH3062 3062 Ser3 tRNA 6 18 1734.505668 2191.748089 1963.126879 3.292948369 -0.00404 94 10 SH21809 21809 copy of SH15489 31.297395 186.214399 108.755897 2.036452815 -0.116553 94 11 SH13955 13955 MT COB Cytbi3 29.109064 183.833816 29.109064 155.724752 92.416908 1.965751434 -0.080373 94 12 SH16454 16454 YER074W-A_0_5_307649_INTRON_95_196 intron 29.023741 194.869047 29.023741 166.845306 97.9345235 1.990935815 -0.142342 94 13 SH21000 21000 YML085C spliced 35.228587 187.979384 111.6039855 2.047679704 0.007315 94 14 SH4900 4900 snR9 5' 79.309678 226.365064 152.837371 2.184229559 0.196849 94 15 SH11683 11683 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5301 5314 87.789896 243.214751 165.5023235 2.218804095 0.146007 94 16 SH8780 8780 LSR1 / U2 RNA U2 541 553 54.202701 207.225889 130.714295 2.116323085 0.072658 94 17 SH12437 12437 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.117385 204.716232 29.117385 176.598847 102.858116 2.012238565 -0.187581 94 18 SH5692 5692 snR34 snR34 381 399 31.387178 174.895863 103.1415205 2.013433529 -0.037412 94 19 SH17539 17539 YJL177W_10_90783_91654_INTRON_310_626 intron 31.573453 214.916664 31.573453 184.343211 107.958332 2.033256166 -0.08899 94 20 SH14998 14998 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 31.756777 191.950445 31.756777 161.193668 96.4752225 1.984415789 0.067362 94 21 SH2074 2074 Lys4 tRNA-exon/intron 36 53 29.770588 170.740641 100.2556145 2.001108703 -0.111833 94 22 SH15083 15083 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.894055 205.37591 29.894055 176.481855 103.187955 2.013629006 -0.137697 94 23 SH17374 17374 YIL052C_9_257061_256224_INTRON_38_509 intron 29.986213 228.825919 29.986213 199.839706 114.9129595 2.06036901 -0.286984 94 24 SH16162 16162 YDR129C_4_715372_713333_INTRON_22_132 intron/exon 30.049467 217.119655 30.049467 188.070188 109.0598275 2.037664806 -0.192619 94 25 SH2974 2974 Ser1 3' flank 30.088657 168.830204 99.4594305 1.997645968 -0.080534 94 26 SH21683 21683 copy of SH10033 30.108478 132.865975 81.4872265 1.911089536 0.115714 94 27 SH21244 21244 YOR312C spliced 30.111795 168.065273 99.088534 1.996023403 -0.074483 94 28 SH4363 4363 telomerase RNA telomerase 851 867 30.099167 181.631608 105.8653875 2.024753992 -0.154138 94 29 SH19781 19781 Negative Control 32.239581 199.528141 115.883861 2.064022957 -0.197552 94 30 SH17306 17306 YHR203C_8_505526_504472_INTRON_15_283 intron 36.524915 212.300185 36.524915 176.77527 106.6500925 2.027961236 0.15626 94 31 SH8266 8266 snoRNA cluster4 snR67 38.6074 245.079186 38.6074 207.471786 123.039593 2.090044886 -0.148727 94 32 SH10513 10513 RUF8 RUF8 491 515 29.865347 162.571107 96.218227 1.98325735 -0.061997 94 33 SH12567 12567 MT_15S MT_15S 29.761527 193.219243 29.761527 164.457716 97.1096215 1.987262261 -0.078571 94 34 SH2405 2405 Phe4 76-91 + 3' flank 76 57.549496 198.907503 128.2284995 2.10798456 0.203897 94 35 SH10698 10698 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 376 394 29.522855 172.900141 101.211498 2.005229853 -0.140223 94 36 SH3397 3397 Thr4 71-72 + 3' flank 71 29.40002 155.179077 92.2895485 1.965152521 -0.056889 94 37 SH15812 15812 YDL061C_4_341182_340627_INTRON_1_408 intron 31.397306 251.543791 31.397306 221.146485 126.2718955 2.1013067 -0.428037 94 38 SH11971 11971 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6741 6760 3226.875808 2908.671515 3067.773662 3.486823314 0.37025 94 39 SH12406 12406 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.507057 211.9815 37.507057 175.474443 106.49075 2.027311886 0.20051 94 40 SH10806 10806 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 916 934 3581.085074 5531.747708 4556.416391 3.658623405 -0.511623 94 41 SH16469 16469 YER102W_5_362729_363698_INTRON_1_360 5' exon 114.117257 419.848852 114.117257 306.731595 210.424426 2.323096151 -0.045121 94 42 SH16267 16267 YDR447C_4_1355542_1354818_INTRON_4_317 5' exon 52.089224 286.505923 52.089224 235.416699 143.7529615 2.1576168 -0.230369 94 43 SH11595 11595 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4861 4874 31.101835 151.815104 91.4584695 1.961223929 0.077646 94 44 SH20184 20184 YDL191W spliced 31.126344 168.33414 99.730242 1.998826873 -0.01416 94 45 SH15298 15298 MT 9S rRNA 3' 26.960472 158.684535 26.960472 132.724063 79.8422675 1.902232862 -0.113265 94 46 SH12191 12191 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7841 7857 44.853055 189.368332 117.1106935 2.068596553 0.14991 94 47 SH15903 15903 YDL083C_4_307788_306925_INTRON_25_456 intron 312.085526 797.225926 312.085526 486.1404 399.112963 2.601095834 0.255288 94 48 SH13702 13702 MT tRNAGlu (and 5' processing site for COB) 5' 31.176693 200.259545 31.176693 170.082852 100.6297725 2.002726491 -0.021639 94 49 SH17873 17873 YLL050C_12_40413_39803_INTRON_15_193 3' exon 31.146864 197.356452 31.146864 167.209588 99.178226 1.996416336 -0.006118 94 50 SH7925 7925 snoRNA cluster1 snR72 39.483616 256.282958 39.483616 217.799342 128.641479 2.109381025 -0.246273 94 51 SH11443 11443 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4101 4118 32415.82759 21898.09502 27156.96131 4.433881173 0.15324 94 52 SH8124 8124 snoRNA cluster 3; snR41 33.012445 212.984073 33.012445 180.971628 106.9920365 2.029351454 -0.004452 94 53 SH8060 8060 snoRNA cluster 2 intergenic/snR61 32.891252 197.219535 32.891252 165.328283 99.1097675 1.996116457 0.107247 94 54 SH431 431 Asp1 5' flank 28.616784 136.003227 82.3100055 1.915452631 -0.009491 94 55 SH14108 14108 MT COB cytbi4/intronic 28.477697 148.235686 28.477697 120.757989 74.617843 1.872842691 0.077638 94 56 SH4600 4600 snR3 5' 107.41963 268.67527 188.04745 2.274267449 0.145777 94 57 SH20707 20707 YJL024C spliced 28.165951 132.560978 80.3634645 1.905058651 -0.022285 94 58 SH11012 11012 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1946 1964 74.775224 192.500141 133.6376825 2.125928936 0.476861 94 59 SH10066 10066 RUF6 RUF6 176 192 35.902624 205.954184 120.928404 2.082528321 -0.178166 94 60 SH5003 5003 snR10 snR10 46 60 31.713135 169.942587 100.827861 2.003580554 0.011091 94 61 SH7018 7018 snR60 3' 35.567378 188.620636 112.094007 2.049582394 0.006669 94 62 SH21873 21873 copy of SH18603 87.466657 258.030658 172.7486575 2.237414681 0.02675 94 63 SH9737 9737 RUF4 RUF4 461 477 31.372401 148.450551 89.911476 1.953815127 0.113777 94 64 SH11911 11911 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6441 6459 105.694492 277.043313 191.3689025 2.281871366 0.071375 94 65 SH10353 10353 RUF7 RUF7 376 392 33.189429 189.150094 111.1697615 2.045986674 -0.072634 94 66 SH13977 13977 MT COB intronic 40.973167 230.472394 40.973167 190.499227 115.736197 2.063469208 0.082005 94 67 SH21879 21879 copy of SH18399 29.058683 128.322803 78.690743 1.895923646 0.068819 94 68 SH1833 1833 Leu9 5' flank 32.830394 185.237013 109.0337035 2.037560764 -0.050387 94 69 SH1862 1862 Leu9 tRNA-intron/exon 51 70 30.71583 160.495798 95.605814 1.980484303 0.006684 94 70 SH15927 15927 YDL108W_4_267697_268698_INTRON_29_109 intron 30.531659 195.848452 30.531659 166.316793 98.424226 1.993102008 -0.037972 94 71 SH15686 15686 YBR191W_2_606228_607098_INTRON_12_399 intron 45.697323 250.403298 45.697323 205.705975 125.701649 2.099340975 -0.0253 94 72 SH3706 3706 Val3 tRNA 11 25 154.646962 315.291448 234.969205 2.371010947 0.217109 94 73 SH17779 17779 YKL180W_11_109271_110131_INTRON_310_615 intron 28.068403 172.711791 28.068403 145.643388 86.8558955 1.938799302 -0.10361 94 74 SH16636 16636 YFR024C-A_6_203420_201947_INTRON_48_165 intron 115.603556 363.282597 115.603556 248.679041 182.1412985 2.260408428 0.365123 94 75 SH18810 18810 YNL302C_14_62942_61957_INTRON_21_571 5' exon 82.419116 338.626547 82.419116 257.207431 169.8132735 2.229971634 -0.022059 94 76 SH8640 8640 snR19 / U1 RNA 3' 29.548051 128.674081 79.111066 1.898237237 0.101126 94 77 SH18392 18392 YMR116C_13_500687_499455_INTRON_538_810 3' exon 29.457307 199.685401 29.457307 171.228094 100.3427005 2.001485785 -0.134505 94 78 SH6877 6877 snR56 snR56 16 35 64.783325 221.326006 143.0546655 2.155502026 0.071055 94 79 SH17238 17238 YHR079C-A_8_262554_262193_INTRON_114_199 exon/intron 33.021431 250.635477 33.021431 218.614046 125.8177385 2.099741875 -0.367271 94 80 SH16930 16930 YGR001C_7_498029_497128_INTRON_36_97 3' exon 34.806202 199.161224 34.806202 165.355022 100.080612 2.000349952 0.211217 94 81 SH17250 17250 YHR097C_8_298611_297387_INTRON_126_249 intron 30.132361 196.821088 30.132361 167.688727 98.910544 1.99524259 -0.070928 94 82 SH4271 4271 telomerase RNA telomerase 391 408 31.012689 145.62907 88.3208795 1.946063385 0.105389 94 83 SH9584 9584 RUF3 RUF3 306 325 29.147808 149.353448 89.250628 1.950611281 -0.043771 94 84 SH7868 7868 snoRNA cluster1 snR73 36.514007 196.115415 36.514007 160.601408 98.5577075 1.993690593 0.31782 94 85 SH7761 7761 snoRNA cluster1 snR76 77.314062 328.668013 77.314062 252.353951 164.8340065 2.217046815 -0.043022 94 86 SH6162 6162 snR39B 3' 29.226836 166.29843 97.762633 1.99017289 -0.125211 94 87 SH20995 20995 YML073C spliced 31.15709 199.455462 115.306276 2.061852946 -0.23785 94 88 SH914 914 Glu3 3' flank 29.405886 146.061453 87.7336695 1.943166294 -0.007804 94 89 SH2366 2366 Phe3 3' flank 29.516239 168.845213 99.180726 1.996427283 -0.117074 94 90 SH2440 2440 Phe5 5' flank 151.103089 345.794117 248.448603 2.395236559 0.023431 94 91 SH11633 11633 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5051 5066 1966.506744 1090.796584 1528.651664 3.184308533 1.258091 94 92 SH18337 18337 YML124C_13_23684_22049_INTRON_26_323 intron 27.937897 154.674672 27.937897 127.736775 77.837336 1.891187964 -0.008282 94 93 SH17017 17017 YGR148C_7_788173_787307_INTRON_1_392 intron 31.773404 222.897927 31.773404 192.124523 111.9489635 2.049020077 -0.151195 94 94 SH7741 7741 snoRNA cluster1 intergenic 29.926924 174.921541 29.926924 145.994617 87.9607705 1.944289025 0.029399 94 95 SH14964 14964 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 31.832288 228.880396 31.832288 198.048108 114.940198 2.060471941 -0.200219 94 96 SH7911 7911 snoRNA cluster1 intergenic 29.931736 167.872395 29.931736 138.940659 84.4361975 1.926528667 0.068475 94 97 SH8892 8892 LSR1 / U2 RNA U2 1101 1113 35.572236 168.099807 101.8360215 2.007901424 0.209515 94 98 SH15075 15075 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.860817 195.52771 29.860817 166.666893 98.263855 1.992393798 -0.082468 94 99 SH1239 1239 Ile1 3' flank 35.47106 181.513519 108.4922895 2.035398874 0.076553 94 100 SH18862 18862 YNR053C_14_723108_721117_INTRON_811_1341 intron 39.196101 215.705533 39.196101 177.509432 108.3527665 2.034840004 0.20763 94 101 SH2006 2006 Lys3 5' flank 31.615873 152.764697 92.190285 1.964685158 0.106614 94 102 SH20974 20974 YML034W spliced 39.138943 200.000131 119.569537 2.077620548 -0.056704 94 103 SH19992 19992 YBL092W spliced 37.249896 166.739602 101.994749 2.008577814 0.27843 94 104 SH16596 16596 YFL034C-A_6_64931_64242_INTRON_13_333 intron 31.585349 230.064313 31.585349 199.478964 115.5321565 2.06270288 -0.221696 95 2 SH10153 10153 RUF6 RUF6 611 632 31.169502 165.698757 98.4341295 1.993145705 0.004462 95 3 SH18085 18085 YLR344W_12_819312_820142_INTRON_20_466 intron 33.419593 227.992064 33.419593 195.572471 114.496032 2.058790436 -0.120699 95 4 SH965 965 Gly1 3' flank 29.286194 159.588605 94.4373995 1.97514402 -0.087637 95 5 SH14401 14401 MT 21S rRNA 21S rRNA3 29.36991 181.710263 29.36991 153.340353 91.3551315 1.960732947 -0.049359 95 6 SH9889 9889 RUF5-1 RUF5-1 251 268 29.427782 136.489129 82.9584555 1.918860658 0.046586 95 7 SH14725 14725 MT tRNA cys; tRNA his intergenic 35.845921 188.241788 35.845921 153.395867 94.620894 1.975987047 0.344167 95 8 SH268 268 Arg4 5' flank 29.451457 142.083184 85.7673205 1.933321842 0.016977 95 9 SH5148 5148 snR11 3' 31.537207 129.072162 80.3046845 1.90474088 0.235931 95 10 SH18986 18986 YOR096W_15_505793_506766_INTRON_145_545 intron 31.463365 215.200552 31.463365 184.737187 108.100276 2.033826803 -0.096777 95 11 SH18110 18110 YLR367W_12_855877_857316_INTRON_698_1180 intron 31.366598 204.031424 31.366598 173.664826 102.515712 2.010790432 -0.031462 95 12 SH15669 15669 YBR191W_2_606228_607098_INTRON_12_399 5' exon 39.696239 256.269626 39.696239 217.573387 128.634813 2.10935852 -0.240678 95 13 SH1064 1064 Gly3 tRNA 56 68 35.373445 162.745261 99.059353 1.995895487 0.257428 95 14 SH21670 21670 copy of SH9620 29.018895 144.478709 86.748802 1.938263486 -0.027214 95 15 SH5691 5691 snR34 snR34 376 392 77.448988 257.293059 167.3710235 2.223680272 -0.08023 95 16 SH17583 17583 YJL191W_10_73786_74610_INTRON_11_418 intron 26.961419 178.628788 26.961419 152.667369 89.814394 1.953345944 -0.225059 95 17 SH4073 4073 SRP RNA SRP RNA 256 270 354.515881 491.002217 422.759049 2.626092912 0.392368 95 18 SH5043 5043 snR10 3' 29.28792 157.533144 93.410532 1.970395846 -0.077013 95 19 SH13899 13899 MT COB intronic 27.317491 155.921584 27.317491 129.604093 78.460792 1.894652688 -0.066495 95 20 SH4151 4151 SRP RNA SRP RNA 646 663 33.868694 165.599927 99.7343105 1.99884459 0.160323 95 21 SH12144 12144 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7606 7624 31.878642 179.51858 105.698611 2.02406928 -0.034873 95 22 SH10303 10303 RUF7 RUF7 126 140 29.845184 148.157355 89.0012695 1.949396201 0.01181 95 23 SH19413 19413 YPR098C_16_729525_728944_INTRON_48_143 3' exon 29.929666 180.723683 29.929666 151.794017 90.8618415 1.958381534 -0.001968 95 24 SH18624 18624 YNL096C_14_444312_443395_INTRON_145_489 intron 45.166604 210.091882 45.166604 165.925278 105.545941 2.023441536 0.454916 95 25 SH7793 7793 snoRNA cluster1 snR75 34.358705 211.116015 34.358705 177.75731 106.0580075 2.025543464 0.073671 95 26 SH19717 19717 Negative Control 32.208765 167.09736 99.6530625 1.99849065 0.057235 95 27 SH3260 3260 Thr2 5' flank 27.875297 119.880605 73.877951 1.868514842 0.03971 95 28 SH10535 10535 RUF8 RUF8 601 618 30.027973 162.921564 96.4747685 1.984413745 -0.052471 95 29 SH16065 16065 YDR005C_4_458099_456832_INTRON_7_86 5' exon 27.834192 152.691392 27.834192 125.8572 76.845696 1.885619548 -0.003645 95 30 SH16675 16675 YFR032C-A_6_223758_223245_INTRON_1_331 intron/exon 32.110983 228.012522 32.110983 196.901539 114.506261 2.058829234 -0.179979 95 31 SH11615 11615 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4961 4978 1073.814575 1129.434594 1101.624585 3.042033619 0.418564 95 32 SH2110 2110 Met1 5' flank 29.800175 142.737457 86.268816 1.935853838 0.038187 95 33 SH2151 2151 Met1 3' flank 31.846157 185.896515 108.871336 2.036913552 -0.092847 95 34 SH20451 20451 YGL137W spliced 40.287327 201.377797 120.832562 2.082183984 -0.055036 95 35 SH9985 9985 RUF5-1 RUF5-1 731 752 28.419283 139.396646 83.9079645 1.923803186 -0.043282 95 36 SH13708 13708 MT tRNAGlu (and 5' processing site for COB) tRNA 57.019811 255.047799 57.019811 199.027988 128.0238995 2.107291051 0.196209 95 37 SH16555 16555 YER133W_5_432491_433954_INTRON_178_702 intron 29.268902 170.342584 29.268902 142.073682 85.671292 1.932835317 0.003934 95 38 SH12943 12943 MT COX1 COX1ai2 33.394734 207.279372 33.394734 174.884638 104.139686 2.017616264 0.067074 95 39 SH21536 21536 copy of SH3942 31.215576 167.984174 99.599875 1.998258793 -0.006694 95 40 SH2772 2772 Pro6 5' flank 33.271398 178.342126 105.806762 2.024513424 0.029606 95 41 SH7312 7312 snR66 snR66 51 67 177.72384 412.791973 295.2579065 2.470201536 -0.116865 95 42 SH4082 4082 SRP RNA SRP RNA 301 316 39.5774 159.45218 99.51479 1.997887631 0.426447 95 43 SH12519 12519 MT_ORF6 + ORF7 (hypothetical) ORF6/7 29.103272 160.537456 29.103272 132.434184 80.768728 1.907243243 0.046736 95 44 SH16568 16568 YER133W_5_432491_433954_INTRON_178_702 intron 29.14724 187.200412 29.14724 159.053172 94.100206 1.973590574 -0.094785 95 45 SH11757 11757 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5671 5684 4435.190894 3080.057416 3757.624155 3.574913339 0.694872 95 46 SH9257 9257 snR6 / U6 RNA 3' 35.564281 162.912694 99.2384875 1.996680137 0.262138 95 47 SH7602 7602 snR189 snR189 81 98 31.360476 153.962904 92.66169 1.966900217 0.083452 95 48 SH7973 7973 snoRNA cluster 2 snR57 74.871246 315.823967 74.871246 241.952721 158.4119835 2.199788032 0.012679 95 49 SH18331 18331 YML094W_13_82275_82849_INTRON_17_99 intron/exon 29.213091 201.773338 29.213091 173.560247 101.386669 2.005980855 -0.163813 95 50 SH690 690 Gln3 5' flank 31.258077 185.078358 108.1682175 2.034099673 -0.107732 95 51 SH10290 10290 RUF7 RUF7 61 80 35.366138 186.942295 111.1542165 2.045925942 0.02212 95 52 SH15714 15714 YBR220C_2_663261_662457_INTRON_302_722 intron 28.95603 158.948329 28.95603 130.992299 79.9741645 1.902949712 0.044585 95 53 SH11523 11523 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4501 4519 73.791483 220.7544 147.2729415 2.168122961 0.185296 95 54 SH20463 20463 YGL183C spliced 47.348682 204.735396 126.042039 2.10051542 0.0079 95 55 SH3605 3605 Val1 tRNA 21 37 40.879282 172.958229 106.9187555 2.029053895 0.293945 95 56 SH20724 20724 YJL177W spliced 32.430207 163.758182 98.0941945 1.991643305 0.090553 95 57 SH21212 21212 YOR096W spliced 30.192996 141.451083 85.8220395 1.933598831 0.072823 95 58 SH20445 20445 YGL103W spliced 32.027519 143.889139 87.958329 1.94427697 0.181949 95 59 SH21626 21626 copy of SH7731 27.819628 145.04873 86.434179 1.936685511 -0.119171 95 60 SH2197 2197 Met2 3' flank 27.670924 141.360056 84.51549 1.926936314 -0.110384 95 61 SH2025 2025 Lys3 tRNA 71 83 75.559591 200.656398 138.1079945 2.140218819 0.399469 95 62 SH853 853 Glu2 tRNA 31 43 71.272797 237.769736 154.5212665 2.188988259 0.00478 95 63 SH336 336 Arg5 tRNA 16 28 29.330053 164.268547 96.7993 1.985872217 -0.107946 95 64 SH5084 5084 snR11 snR11 21 35 639.567648 872.852319 756.2099835 2.878642407 0.175663 95 65 SH19440 19440 YPR187W_16_911252_911795_INTRON_21_96 intron 31.139574 203.868163 31.139574 173.728589 102.4340815 2.010444478 -0.045414 95 66 SH7072 7072 snR62 3' 34.968777 219.714205 127.341491 2.104969931 -0.339153 95 67 SH11998 11998 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6876 6892 174.115666 329.691693 251.9036795 2.401234511 0.262247 95 68 SH3410 3410 Thr4 3' flank 29.813113 142.407023 86.110068 1.935053932 0.040908 95 69 SH13993 13993 MT COB intronic 29.649835 162.982819 29.649835 134.332984 81.9914095 1.913768352 0.074828 95 70 SH14074 14074 MT COB Cytbi4 28.507399 189.83401 28.507399 162.326611 95.417005 1.979625781 -0.157352 95 71 SH2661 2661 Pro4 5' flank 30.231107 133.893182 82.0621445 1.914142862 0.118273 95 72 SH19941 19941 YBL027W spliced 30.036563 141.894998 85.9657805 1.934325611 0.059441 95 73 SH3823 3823 RNaseP RNaseP 81 95 48.761956 207.587476 128.174716 2.107802364 -0.003899 95 74 SH15514 15514 YBR048W_2_332790_333771_INTRON_46_556 intron 33.451955 213.659344 33.451955 181.207389 107.329672 2.030719802 0.009194 95 75 SH11154 11154 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2656 2671 356.201265 421.906571 389.053918 2.590009793 0.652786 95 76 SH14087 14087 MT COB Cytbi4 29.465319 192.269867 29.465319 163.804548 96.6349335 1.985134152 -0.096105 95 77 SH5866 5866 snR35 snR35 516 531 32.168917 161.800855 96.984886 1.98670406 0.087647 95 78 SH10466 10466 RUF8 RUF8 256 278 27.470059 147.652822 87.5614405 1.942312898 -0.15967 95 79 SH8012 8012 snoRNA cluster 2 intergenic 28.342946 198.328652 28.342946 170.985706 99.664326 1.998539734 -0.211459 95 80 SH6248 6248 snR42 snR42 21 37 106.061265 255.772358 180.9168115 2.257478925 0.227496 95 81 SH14459 14459 MT 21S rRNA 21S rRNA3 31.018716 194.796249 31.018716 164.777533 97.8981245 1.990774372 0.001061 95 82 SH8980 8980 snR17a / U3a U3a 186 202 32.823374 160.758474 96.790924 1.985834636 0.131863 95 83 SH15154 15154 MT tRNA Thr1 reverse complement 3' 25.447617 141.772396 25.447617 117.324779 71.386198 1.853614252 -0.129202 95 84 SH15983 15983 YDL136W_4_217600_218367_INTRON_4_408 intron 29.119287 171.062217 29.119287 142.94293 86.0311085 1.934655519 -0.011613 95 85 SH5612 5612 snR34 5' 32.821673 201.6425 117.2320865 2.069046495 -0.195564 95 86 SH324 324 Arg5 5' flank 29.187749 154.242625 91.715187 1.962441256 -0.067023 95 87 SH1350 1350 Ile3 131-133 + 3' flank 131 150 29.258899 137.435305 83.347102 1.920890504 0.029081 95 88 SH17164 17164 YHR016C_8_138446_136872_INTRON_48_215 intron 32.130195 190.198293 32.130195 159.068098 95.5991465 1.980454015 0.102702 95 89 SH18706 18706 YNL130C_14_381156_379555_INTRON_30_470 intron 35.968142 195.094288 35.968142 160.126146 98.047144 1.991434948 0.304778 95 90 SH5878 5878 snR35 3' 31.428934 183.444008 107.436471 2.031151734 -0.086235 95 91 SH20099 20099 YDL029W spliced 31.54124 170.548158 101.044699 2.004513535 -0.002683 95 92 SH10503 10503 RUF8 RUF8 441 457 58.053428 200.846539 129.4499835 2.112101999 0.189624 95 93 SH16598 16598 YFL034C-A_6_64931_64242_INTRON_13_333 intron 29.840041 199.304301 29.840041 170.46426 100.1521505 2.000660279 -0.105831 95 94 SH16929 16929 YGR001C_7_498029_497128_INTRON_36_97 intron/exon 31.782633 214.571902 31.782633 183.789269 107.785951 2.032562158 -0.076002 95 95 SH14146 14146 MT COB intronic 28.034821 197.677581 28.034821 170.64276 99.3387905 1.997118868 -0.232517 95 96 SH2443 2443 Phe5 5' flank - tRNA3 3 31.816032 182.244095 107.0300635 2.029505783 -0.060497 95 97 SH1609 1609 Leu5 5' flank 28.018058 176.164302 102.09118 2.008988224 -0.259556 95 98 SH13838 13838 MT COB Cytbi2 29.869171 179.014176 29.869171 150.145005 90.007088 1.954276711 0.002682 95 99 SH3374 3374 Thr4 5' flank 29.823959 148.163392 88.9936755 1.949359144 0.010301 95 100 SH9413 9413 RUF2 5' 31.661592 147.823094 89.742343 1.952997404 0.136251 95 101 SH145 145 Arg1 3' flank 31.621507 183.294832 107.4581695 2.031239438 -0.077544 95 102 SH858 858 Glu2 tRNA 56 68 32.535945 171.573034 102.0544895 2.008832115 0.049274 95 103 SH16956 16956 YGR029W_7_543547_544199_INTRON_87_169 intron 31.580826 195.755583 31.580826 165.174757 98.3777915 1.992897069 0.032188 95 104 SH3053 3053 Ser3 5' flank 31.582751 156.6665 94.1246255 1.973703261 0.084008 96 2 SH18755 18755 YNL162W_14_331319_332151_INTRON_5_516 intron 957.748871 2134.091117 957.748871 1177.342246 1067.545559 3.028386418 0.205133 96 3 SH18933 18933 YOL121C_15_92849_92025_INTRON_21_410 intron 30.447097 186.232941 30.447097 156.785844 93.6164705 1.971352263 0.007393 96 4 SH1554 1554 Leu4 5' flank 29.476008 158.599182 94.037595 1.973301514 -0.069192 96 5 SH14735 14735 MT tRNA cys; tRNA his tRNA his / 3' 31.689343 198.442231 31.689343 167.752888 99.7211155 1.998787128 0.022864 96 6 SH7799 7799 snoRNA cluster1 snR75 31.742174 199.862517 31.742174 169.120343 100.4312585 2.001868905 0.01773 96 7 SH19479 19479 ADH1 56.477093 198.210866 127.3439795 2.104978417 0.198675 96 8 SH17099 17099 YHL001W_8_104270_105084_INTRON_130_527 intron 29.616833 168.525315 29.616833 139.908482 84.7626575 1.928204564 0.04079 96 9 SH14531 14531 MT 21S rRNA 21S rRNA3 29.575145 190.968399 29.575145 162.393254 95.9841995 1.982199747 -0.081375 96 10 SH19492 19492 YPT1 31.632203 183.897338 107.7647705 2.032476808 -0.082677 96 11 SH8512 8512 snR19 / U1 RNA U1 56 77 29.405576 139.223044 84.31431 1.92590129 0.029541 96 12 SH19594 19594 AEP2/ATP13 2.1 31.413695 181.252868 106.3332815 2.026669217 -0.072107 96 13 SH20623 20623 YHR101C spliced 37.639105 172.041824 104.8404645 2.020528936 0.238057 96 14 SH18639 18639 YNL096C_14_444312_443395_INTRON_145_489 3' exon 31.228717 202.840132 31.228717 172.611415 101.920066 2.008259696 -0.033516 96 15 SH7177 7177 snR64 5' 29.094923 151.305382 90.2001525 1.955207272 -0.058059 96 16 SH19236 19236 YPL090C_16_378390_377286_INTRON_7_400 intron 31.21544 202.043676 31.21544 171.828236 101.521838 2.006559472 -0.02969 96 17 SH13493 13493 MT COX1 Exon 5g 31.287376 192.242213 31.287376 161.954837 96.6211065 1.985072007 0.034738 96 18 SH3392 3392 Thr4 tRNA 46 62 31.399721 151.866819 91.63327 1.962053185 0.097152 96 19 SH1598 1598 Leu4 3' flank 31.534858 185.261391 108.3981245 2.035021768 -0.09884 96 20 SH14309 14309 MT VAR1 includes 5’ processing site VAR1 29.541561 192.592316 29.541561 164.050755 96.796158 1.98585812 -0.091959 96 21 SH202 202 Arg2 3' flank 38.231558 198.780167 118.5058625 2.073739835 -0.056799 96 22 SH12399 12399 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.055534 217.785167 34.055534 184.729633 109.3925835 2.038987879 -0.001869 96 23 SH330 330 Arg5 5' flank - tRNA3 5' flank 3 31.9863 179.673574 105.829937 2.024608538 -0.030132 96 24 SH3663 3663 Val2 tRNA 56 68 45.011299 202.803942 123.9076205 2.093098017 -0.002945 96 25 SH5669 5669 snR34 snR34 266 283 32.077461 194.499833 113.288647 2.05418639 -0.160521 96 26 SH21650 21650 copy of SH8770 137 312.820634 224.910317 2.352009378 0.105126 96 27 SH8984 8984 snR17a / U3a U3a 206 222 36.424499 178.501847 107.463173 2.03125966 0.136561 96 28 SH131 131 Arg1 31-43 31 43 64.622735 219.588598 142.1056665 2.152611396 0.085346 96 29 SH528 528 Cys1 5' flank 29.901257 160.062822 94.9820395 1.977641491 -0.046907 96 30 SH8037 8037 snoRNA cluster 2 snR55/intergenic 27.70578 164.884935 27.70578 138.179155 82.9424675 1.918776951 -0.089997 96 31 SH2278 2278 Phe2 5' flank - tRNA4 4 36.25664 164.505024 100.380832 2.001650791 0.268822 96 32 SH19923 19923 YAL030W spliced 31.871396 189.417359 110.6443775 2.04392935 -0.12356 96 33 SH19590 19590 AEP2/ATP13 2.1 29.638731 137.323863 83.481297 1.921589188 0.056878 96 34 SH9602 9602 RUF3 RUF3 396 413 218.673721 473.493346 346.0835335 2.539180936 -0.121556 96 35 SH13457 13457 MT COX1 intronic 31.566582 186.186994 31.566582 155.620412 93.593497 1.971245674 0.088372 96 36 SH13963 13963 MT COB Cytbi3 29.34346 181.013449 29.34346 152.669989 91.0067245 1.959073484 -0.04768 96 37 SH16613 16613 YFL039C_6_54695_53260_INTRON_11_318 5' exon 31.365395 172.665638 31.365395 142.300243 86.832819 1.9386839 0.14759 96 38 SH8906 8906 LSR1 / U2 RNA 1171-1175 + 3' 1171 29.180622 112.039931 70.6102765 1.848867912 0.189936 96 39 SH9542 9542 RUF3 RUF3 96 112 31.232304 150.192485 90.7123945 1.957666631 0.095038 96 40 SH20260 20260 YDR397C spliced 39.624465 180.604356 110.1144105 2.041844158 0.177675 96 41 SH18227 18227 YML026C_13_223828_222987_INTRON_48_448 intron 33.316491 249.849017 33.316491 217.532526 125.4245085 2.098382408 -0.350176 96 42 SH2161 2161 Met2 5' flank 46.012319 228.197655 137.104987 2.137053252 -0.251852 96 43 SH549 549 Cys1 tRNA 46 62 65.185363 203.112198 134.1487805 2.127586729 0.25387 96 44 SH847 847 Glu2 tRNA 1 17 2931.429693 2623.466714 2777.448204 3.443645969 0.406885 96 45 SH7473 7473 snR71 5' - 1 -19 1 31.444011 162.160091 96.802051 1.985884559 0.042786 96 46 SH4208 4208 telomerase RNA telomerase 76 93 29.377069 131.547606 80.4623375 1.905592645 0.071692 96 47 SH19392 19392 YPR043W_16_654161_654842_INTRON_3_405 intron 29.403666 148.366892 29.403666 119.963226 74.683446 1.873224349 0.148919 96 48 SH10126 10126 RUF6 RUF6 476 491 31.521627 152.081288 91.8014575 1.962849576 0.104051 96 49 SH8401 8401 snoRNA cluster 5 snR190 29.360172 178.317248 29.360172 149.957076 89.658624 1.952592069 -0.031973 96 50 SH5119 5119 snR11 snR11 196 210 37.751019 171.915414 104.8332165 2.020498911 0.242854 96 51 SH4398 4398 telomerase RNA telomerase 1026 1043 33.394487 201.769346 117.5819165 2.070340535 -0.184693 96 52 SH2550 2550 Pro2 5' flank - tRNA2 2 33.241929 192.644739 112.943334 2.052860604 -0.101632 96 53 SH13675 13675 MT ATP6 3' 33.064753 238.338918 33.064753 206.274165 119.669459 2.077983328 -0.239803 96 54 SH6917 6917 snR58 5' 34.945541 218.218791 126.582166 2.102372523 -0.323945 96 55 SH3927 3927 RNase MRP RNaseMRP 51 73 30.600619 151.818098 91.2093585 1.960039401 0.043913 96 56 SH19984 19984 YBL091C-A spliced 32.448649 172.166311 102.30748 2.009907387 0.040744 96 57 SH13755 13755 MT COB exon1/intron 38.346323 233.873487 38.346323 196.527164 117.4367435 2.069804 -0.029538 96 58 SH11737 11737 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5571 5591 32.025724 181.738514 106.882119 2.028905055 -0.047939 96 59 SH15495 15495 YBL092W_2_45639_46364_INTRON_1_333 intron 31.829471 208.508414 31.829471 177.678943 104.754207 2.020171474 -0.027294 96 60 SH9342 9342 RUF1 RUF1 286 302 31.652096 139.529592 85.590844 1.932427309 0.182402 96 61 SH3114 3114 Ser4 5' flank 29.509461 152.852443 91.180952 1.959904122 -0.03694 96 62 SH20170 20170 YDL137W spliced 104.962233 257.000286 180.9812595 2.257633606 0.208201 96 63 SH4621 4621 snR3 snR3 21 37 256.132045 418.041787 337.086916 2.527741896 0.277099 96 64 SH9499 9499 RUF2 3' 37.075936 162.542519 99.8092275 1.999170694 0.315842 96 65 SH10337 10337 RUF7 RUF7 296 315 31.070709 182.365758 106.7182335 2.028238628 -0.098849 96 66 SH16950 16950 YGR027C_7_534779_534126_INTRON_1_312 intron/exon 32.9229 231.406589 32.9229 199.483689 116.2032945 2.065218441 -0.172051 96 67 SH15386 15386 YBL040C_2_142830_142074_INTRON_23_119 5' exon 44.506286 268.021785 44.506286 224.515499 134.5108925 2.128757454 -0.238942 96 68 SH21617 21617 copy of SH7318 32.633993 171.123698 101.8788455 2.008084015 0.057563 96 69 SH5375 5375 snR31 5' 32.451735 156.886379 94.669057 1.976208051 0.135348 96 70 SH17734 17734 YKL156W_11_158616_159214_INTRON_4_353 intron 41.849082 257.537172 41.849082 216.68809 129.268586 2.111492998 -0.198223 96 71 SH6829 6829 snR52 snR52 51 70 33.946656 162.805589 98.3761225 1.992889701 0.181911 96 72 SH19905 19905 YAL001C spliced 39.414295 167.063376 103.2388355 2.013843097 0.342815 96 73 SH11388 11388 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3826 3845 42049.62938 30536.35822 36292.9938 4.559822794 -0.036994 96 74 SH12056 12056 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7166 7182 37.101808 153.828954 95.465381 1.97984591 0.405677 96 75 SH7047 7047 snR62 snR62 26 45 33.212436 146.611857 89.9121465 1.953818366 0.242157 96 76 SH10533 10533 RUF8 RUF8 591 612 31.243305 152.863816 92.0535605 1.964040591 0.081488 96 77 SH13969 13969 MT COB Cytbi3 29.311178 191.668008 29.311178 163.35683 96.334004 1.983779612 -0.104773 96 78 SH21908 21908 copy of SH19403 32.947721 174.709835 103.828778 2.016317743 0.052618 96 79 SH11823 11823 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6001 6016 36.585577 200.965455 118.775516 2.074726926 -0.111431 96 80 SH4007 4007 SRP RNA 5' 31.000473 147.814296 89.4073845 1.95137339 0.092506 96 81 SH15374 15374 YBL027W_2_168385_169338_INTRON_3_386 intron 29.119725 206.385386 29.119725 178.265661 103.692693 2.015748154 -0.196975 96 82 SH6548 6548 snR46 3' 30.922595 166.126652 98.5246235 1.993544784 -0.013026 96 83 SH17982 17982 YLR275W_12_694378_694800_INTRON_6_95 5' exon 30.897891 200.316055 30.897891 170.418164 100.6580275 2.002848416 -0.040432 96 84 SH10636 10636 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 66 83 32.725784 189.504938 111.115361 2.045774102 -0.092649 96 85 SH15460 15460 YBL087C_2_60732_59815_INTRON_43_546 intron 32.741174 223.829839 32.741174 192.088665 112.4149195 2.050823954 -0.114937 96 86 SH15874 15874 YDL082W_4_308423_309387_INTRON_5_369 5' exon 82.711901 334.207365 82.711901 252.495464 167.6036825 2.224283556 0.017447 96 87 SH18345 18345 YML124C_13_23684_22049_INTRON_26_323 intron 29.167158 154.617683 29.167158 126.450525 77.8088415 1.891028949 0.088663 96 88 SH581 581 Gln1 5' flank 29.248768 185.383394 107.316081 2.030664805 -0.228487 96 89 SH10314 10314 RUF7 RUF7 181 202 31.199725 149.479852 90.3397885 1.955879069 0.096725 96 90 SH10322 10322 RUF7 RUF7 221 238 33.175388 193.272491 113.2239395 2.053938262 -0.109522 96 91 SH10027 10027 RUF6 5' 35.169243 170.277415 102.723329 2.011669085 0.174147 96 92 SH14975 14975 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.670212 180.80679 29.670212 152.136578 90.903395 1.958580103 -0.021863 96 93 SH13883 13883 MT COB intronic 29.763683 158.633201 29.763683 129.869518 79.8166005 1.902093227 0.109233 96 94 SH11316 11316 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3466 3483 10042.64988 8558.688637 9300.669258 3.968514201 0.129482 96 95 SH16577 16577 YER179W_5_548416_549512_INTRON_133_224 intron 31.772921 173.78824 31.772921 143.015319 87.39412 1.941482214 0.17032 96 96 SH21892 21892 copy of SH18802 39.360368 214.589621 126.9749945 2.103718203 -0.214221 96 97 SH5316 5316 snR30 snR30 431 445 31.787614 143.055244 87.421429 1.941617901 0.171054 96 98 SH10768 10768 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 726 741 58.281602 212.710138 135.49587 2.131926058 0.070559 96 99 SH3054 3054 Ser3 5' flank 33.602241 156.441404 95.0218225 1.977823356 0.203361 96 100 SH20124 20124 YDL079C spliced 35.439611 157.30181 96.3707105 1.983945061 0.29731 96 101 SH13700 13700 MT tRNAGlu (and 5' processing site for COB) 5' 31.625711 183.240027 31.625711 152.614316 92.1200135 1.964353993 0.108058 96 102 SH20198 20198 YDR005C spliced 30.651993 148.987579 89.819786 1.953372016 0.062641 96 103 SH8295 8295 snoRNA cluster4 intergenic 30.633342 192.028093 30.633342 162.394751 96.5140465 1.984590524 -0.008426 96 104 SH1009 1009 Gly2 tRNA 36 48 217.537817 399.337431 308.437624 2.489167349 0.16889 97 2 SH19852 19852 Negative Control 38.042715 169.349614 103.6961645 2.015762693 0.27745 97 3 SH4616 4616 snR3 5' - 15 15 33.844946 176.09366 104.969303 2.021062313 0.071491 97 4 SH14372 14372 MT ORF9 and ORF10 (hypothetical) ORF10 36.085895 215.490996 36.085895 180.405101 108.245498 2.034409843 0.107476 97 5 SH15658 15658 YBR189W_2_604466_605466_INTRON_8_420 intron 42.628143 249.047174 42.628143 207.419031 125.023587 2.096991955 -0.08814 97 6 SH14655 14655 MT 21S rRNA 21S rRNA4 38.36621 231.248184 38.36621 193.881974 116.124092 2.064922331 0.000342 97 7 SH12363 12363 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.773613 178.040937 29.773613 149.267324 89.5204685 1.951922346 0.000781 97 8 SH8392 8392 snoRNA cluster 5 snR190 36.21789 188.594917 36.21789 153.377027 94.7974585 1.976796694 0.36359 97 9 SH15197 15197 MT COX3 cox3 29.721988 169.053973 29.721988 140.331985 85.0269865 1.929556787 0.0459 97 10 SH12858 12858 MT COX1 COX1ai1 29.64716 169.278068 29.64716 140.630908 85.139034 1.930128718 0.038932 97 11 SH10712 10712 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 446 462 31.678729 159.182923 95.430826 1.979688683 0.075515 97 12 SH6286 6286 snR42 snR42 211 228 29.429689 151.143343 90.286516 1.955622895 -0.033449 97 13 SH13518 13518 MT COX1 intronic 28.257991 167.781474 28.257991 140.523483 84.390737 1.92629478 -0.061543 97 14 SH10283 10283 RUF7 RUF7 26 42 41.899082 183.770035 112.8345585 2.052442134 0.1776 97 15 SH13483 13483 MT COX1 intronic 29.164416 197.14532 29.164416 168.980904 99.07266 1.995953824 -0.142611 97 16 SH9333 9333 RUF1 RUF1 241 260 29.152655 138.890691 84.021673 1.924391325 0.013211 97 17 SH3199 3199 Ser5 3' flank 29.186873 166.774544 97.9807085 1.991140576 -0.130366 97 18 SH40 40 Ala1 3' flank 35.598857 174.744905 105.171881 2.021899641 0.14499 97 19 SH9954 9954 RUF5-1 RUF5-1 576 592 31.472721 170.727959 101.10034 2.004752616 -0.007819 97 20 SH15996 15996 YDL137W_4_216158_217074_INTRON_1_332 5' exon 31.582869 206.803657 31.582869 176.220788 103.9018285 2.01662319 -0.033461 97 21 SH13644 13644 MT ATP6 ATP6 29.553683 149.438567 29.553683 120.884884 75.2192835 1.876329192 0.153043 97 22 SH13307 13307 MT COX1 COX1-ai5a 29.635845 184.21951 29.635845 155.583665 92.609755 1.966656735 -0.042418 97 23 SH19429 19429 YPR132W_16_794960_795762_INTRON_66_430 intron 31.843215 185.8344 31.843215 154.991185 93.4172 1.970426846 0.109762 97 24 SH6915 6915 snR58 5' 27.600759 167.12116 97.3609595 1.988384845 -0.248007 97 25 SH8488 8488 snR19 / U1 RNA 5' 31.926067 175.050865 103.488466 2.014891949 -0.006489 97 26 SH2256 2256 Phe1 3' flank 31.945764 161.465123 96.7054435 1.985450921 0.076744 97 27 SH7331 7331 snR66 3' 29.802285 131.770685 80.786485 1.907338712 0.100637 97 28 SH6056 6056 snR37 snR37 196 213 34.099904 179.600666 106.850285 2.028775685 0.047205 97 29 SH1219 1219 Ile1 tRNA 56 68 34.079191 170.990776 102.5349835 2.010872066 0.129375 97 30 SH4165 4165 SRP RNA 3' 29.746634 165.406644 97.576639 1.989345855 -0.08427 97 31 SH20687 20687 YIL133C spliced 40.428968 164.184711 102.3068395 2.009904668 0.399485 97 32 SH4149 4149 SRP RNA SRP RNA 636 652 40.343886 183.551638 111.947762 2.049015416 0.15515 97 33 SH21020 21020 YMR079W spliced 31.695021 167.937801 99.816411 1.99920195 0.02208 97 34 SH20401 20401 YFR024C-A spliced 31.60562 178.027877 104.8167485 2.020430683 -0.04248 97 35 SH4643 4643 snR3 snR3 131 145 33.634732 186.368898 110.001815 2.041399851 -0.031672 97 36 SH14148 14148 MT COB intronic 29.306142 193.335456 29.306142 165.029314 97.167728 1.987522048 -0.113381 97 37 SH1827 1827 Leu8 3' flank 31.34026 144.24444 87.79235 1.943456674 0.134934 97 38 SH21162 21162 YNL301C spliced 41.824621 176.708843 109.266732 2.038487954 0.263396 97 39 SH18609 18609 YNL069C_14_494998_493953_INTRON_29_477 intron 31.240359 193.326384 31.240359 163.086025 97.163192 1.987501774 0.024855 97 40 SH1634 1634 Leu5 tRNA-exon/intron 36 54 29.131735 178.109191 103.620463 2.015445528 -0.195312 97 41 SH2434 2434 Phe5 5' flank 29.157071 156.588123 92.872597 1.96788759 -0.081432 97 42 SH16260 16260 YDR424C_4_1319830_1319376_INTRON_26_121 intron 31.319119 188.355353 31.319119 158.036234 94.6776765 1.976247591 0.05956 97 43 SH13975 13975 MT COB cytbi3/intron 29.284542 184.314145 29.284542 156.029603 92.6570725 1.966878575 -0.069484 97 44 SH17393 17393 YIL069C_9_232366_231550_INTRON_4_412 intron 29.367606 196.695984 29.367606 168.328378 98.847992 1.994967851 -0.125068 97 45 SH1344 1344 Ile3 tRNA 101 113 37.957261 191.292828 114.6250445 2.059279517 0.02204 97 46 SH5539 5539 snR33 5' - 3 -19 3 31.635871 197.400308 114.5180895 2.058874094 -0.202105 97 47 SH9282 9282 RUF1 5' - 5 -14 5 31.667713 168.299917 99.983815 1.999929704 0.01828 97 48 SH21691 21691 copy of SH10451 31.65874 182.875832 107.267286 2.030467293 -0.072273 97 49 SH18030 18030 YLR316C_12_766358_765266_INTRON_230_285 exon/intron 29.477472 193.326213 29.477472 164.848741 97.1631065 1.987501392 -0.100397 97 50 SH17036 17036 YGR183C_7_859471_859058_INTRON_4_216 intron 29.387703 184.391754 29.387703 156.004051 92.695877 1.967060418 -0.062053 97 51 SH12454 12454 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.37522 177.215216 31.37522 146.839996 89.107608 1.949914786 0.1228 97 52 SH1777 1777 Leu8 5' flank 31.211524 163.504828 97.358176 1.988372429 0.020523 97 53 SH3002 3002 Ser2 5' flank 31.026649 207.164232 119.0954405 2.075895135 -0.306866 97 54 SH7176 7176 snR64 5' 34.983623 151.83211 93.4078665 1.970383453 0.309059 97 55 SH20181 20181 YDL191W spliced 34.751151 211.335866 123.0435085 2.090058706 -0.257407 97 56 SH17976 17976 YLR211C_12_564531_563792_INTRON_19_77 exon/intron 48.901684 233.319801 48.901684 185.418117 117.1599005 2.068778994 0.251386 97 57 SH17326 17326 YIL004C_9_348502_347943_INTRON_12_142 intron 30.212928 181.972953 30.212928 152.760025 91.4864765 1.961356902 0.012442 97 58 SH17240 17240 YHR079C-A_8_262554_262193_INTRON_114_199 intron 32.037785 215.305328 32.037785 184.267543 108.152664 2.034037221 -0.070809 97 59 SH18289 18289 YML067C_13_140214_139063_INTRON_32_124 3' exon 33.850186 219.976758 33.850186 187.126572 110.488379 2.043316602 -0.030869 97 60 SH6534 6534 snR46 snR46 161 178 29.658247 121.736484 75.6973655 1.879080765 0.154489 97 61 SH14235 14235 MT tRNA Ser 5' 33.48462 201.389477 33.48462 168.904857 101.1947385 2.005157932 0.118925 97 62 SH9818 9818 RUF4 3' 29.374684 165.847452 97.611068 1.989499065 -0.112539 97 63 SH12569 12569 MT_15S MT_15S 27.289853 160.390591 27.289853 134.100738 80.6952955 1.906848216 -0.096843 97 64 SH20585 20585 YHR021C spliced 33.089193 150.019743 91.554468 1.961679543 0.215827 97 65 SH2311 2311 Phe2 3' flank 31.015962 190.771883 110.8939225 2.044907745 -0.168176 97 66 SH16986 16986 YGR118W_7_726968_727725_INTRON_66_385 intron 32.854289 211.334433 32.854289 179.480144 106.1672165 2.025990431 0.00376 97 67 SH1115 1115 Gly4 tRNA 51 66 32.716337 160.519842 96.6180895 1.985058446 0.127267 97 68 SH18541 18541 YMR230W_13_732413_733140_INTRON_53_462 intron 32.556646 207.541718 32.556646 175.985072 104.270859 2.018162951 0.024666 97 69 SH7928 7928 snoRNA cluster1 snR72 30.451376 177.926524 30.451376 148.475148 89.463262 1.951644729 0.051804 97 70 SH2284 2284 Phe2 tRNA 16 28 60.007926 209.043493 134.5257095 2.128805291 0.129686 97 71 SH12390 12390 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.724996 192.020438 36.724996 156.295442 96.510219 1.984573301 0.370432 97 72 SH1001 1001 Gly2 5' flank - tRNA10 10 50.699765 181.687074 116.1934195 2.065181533 0.320068 97 73 SH17729 17729 YKL156W_11_158616_159214_INTRON_4_353 intron 48.513492 248.639009 48.513492 201.125517 124.8195045 2.096282454 0.063368 97 74 SH7030 7030 snR62 5' 31.415248 168.541538 99.978393 1.999906152 0.00186 97 75 SH8078 8078 snoRNA cluster 2 snR61/3' 29.420131 183.112074 29.420131 154.691943 92.056037 1.964052275 -0.052922 97 76 SH4705 4705 snR4 snR4 61 76 33.023044 167.224373 100.1237085 2.000536927 0.103136 97 77 SH19438 19438 YPR187W_16_911252_911795_INTRON_21_96 5' exon 31.085949 205.090755 31.085949 175.004806 103.0453775 2.013028515 -0.056072 97 78 SH17309 17309 YHR203C_8_505526_504472_INTRON_15_283 intron 34.708512 223.910753 34.708512 190.202241 112.4553765 2.050980224 -0.02881 97 79 SH19680 19680 SIR1 2.4 31.885157 208.138198 120.0116775 2.079223506 -0.285097 97 80 SH1964 1964 Lys2 tRNA 21 35 32.753707 161.481418 97.1175625 1.987297774 0.123333 97 81 SH10298 10298 RUF7 RUF7 101 121 30.871289 182.843456 106.8573725 2.028804491 -0.113544 97 82 SH3099 3099 Ser4 5' flank 29.000043 187.099603 108.049823 2.03362406 -0.253814 97 83 SH21520 21520 copy of SH3381 28.970725 130.05518 79.5129525 1.90043788 0.051471 97 84 SH8446 8446 snoRNA cluster 5 snR128 70.284644 271.492332 70.284644 202.207688 136.246166 2.13432429 0.324521 97 85 SH15891 15891 YDL082W_4_308423_309387_INTRON_5_369 intron 28.958373 159.75108 28.958373 131.792707 80.37554 1.905123904 0.040008 97 86 SH14727 14727 MT tRNA cys; tRNA his intergenic 34.47805 222.932602 34.47805 189.454552 111.966301 2.049087331 -0.029717 97 87 SH9489 9489 RUF2 3' 34.537473 144.280621 89.409047 1.951381466 0.336328 97 88 SH809 809 Glu1 61-72 + 3' flank 61 73 30.944601 159.823405 95.384003 1.979475545 0.025484 97 89 SH21584 21584 copy of SH6041 29.199011 148.665576 88.9322935 1.949059493 -0.036445 97 90 SH3467 3467 Trp1 3' flank 562.174562 614.454561 588.3145615 2.769609598 0.586924 97 91 SH21128 21128 YNL130C spliced 31.2833 166.860433 99.0718665 1.995950345 0.004176 97 92 SH7131 7131 snR63 snR63 161 175 31.410751 183.953535 107.682143 2.03214369 -0.091609 97 93 SH6768 6768 snR50 snR50 16 32 1226.752166 953.253063 1090.002615 3.03742754 0.861001 97 94 SH1962 1962 Lys2 tRNA 11 23 48.59194 196.669813 122.6308765 2.088599832 0.1148 97 95 SH13515 13515 MT COX1 intronic 29.827078 193.371281 29.827078 164.544203 97.1856405 1.987602101 -0.074431 97 96 SH8357 8357 snoRNA cluster4 3' 29.869606 185.587493 29.869606 156.717887 93.2937465 1.969852534 -0.031997 97 97 SH21596 21596 copy of SH6472 28.938287 160.587249 94.762768 1.976637738 -0.117492 97 98 SH2963 2963 Ser1 tRNA 46 58 31.754308 162.449355 97.1018315 1.987227421 0.059333 97 99 SH12137 12137 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7571 7588 43.057584 185.809351 114.4334675 2.058553058 0.168749 97 100 SH13835 13835 MT COB Cytbi2 39.224521 221.344169 39.224521 183.119648 111.1720845 2.045995749 0.140375 97 101 SH4569 4569 U3b (snR17b) U3b 401 417 31.631932 153.197445 92.4146885 1.965741004 0.105376 97 102 SH2452 2452 Phe5 tRNA-exon/intron 31 48 31.596235 186.320517 108.958376 2.037260622 -0.10613 97 103 SH21312 21312 YPL241C spliced 33.460764 203.424371 118.4425675 2.073507813 -0.201082 97 104 SH15380 15380 YBL027W_2_168385_169338_INTRON_3_386 intron 31.56634 195.694815 31.56634 165.128475 98.3474075 1.992762916 0.031615 98 2 SH10064 10064 RUF6 RUF6 166 185 36.068877 202.515173 119.292025 2.076611411 -0.138224 98 3 SH15098 15098 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 31.841844 207.262765 31.841844 176.420921 104.1313825 2.017581634 -0.019348 98 4 SH20034 20034 YBR186W spliced 31.920686 163.12124 97.520963 1.989097981 0.064908 98 5 SH18931 18931 YOL121C_15_92849_92025_INTRON_21_410 intron 3011.524233 4709.127355 3011.524233 1698.603122 2355.063678 3.372002654 1.123801 98 6 SH20663 20663 YIL052C spliced 42.850921 205.09641 123.9736655 2.093329442 -0.059492 98 7 SH2606 2606 Pro3 5' flank 32.050598 196.920909 114.4857535 2.058751447 -0.182399 98 8 SH15134 15134 MT tRNA Phe 3' 29.882121 181.372966 29.882121 152.490845 91.186483 1.959930466 -0.008977 98 9 SH19068 19068 YOR293W_15_867094_867848_INTRON_53_489 intron 36.308427 240.223355 36.308427 204.914928 120.6116775 2.081389358 -0.159197 98 10 SH20171 20171 YDL137W spliced 108.558647 275.180927 191.869787 2.283006593 0.110296 98 11 SH9543 9543 RUF3 RUF3 101 117 36.086232 196.227799 116.1570155 2.065045445 -0.069196 98 12 SH15192 15192 MT COX3 cox3 31.665434 219.339312 31.665434 188.673878 110.169656 2.042061993 -0.12469 98 13 SH21583 21583 copy of SH5872 31.526944 180.678616 106.10278 2.025726763 -0.062156 98 14 SH6893 6893 snR56 3' 29.289089 138.222764 83.7559265 1.923015547 0.026801 98 15 SH17914 17914 YLR061W_12_263195_263949_INTRON_13_401 intron 33.422526 214.506571 33.422526 182.084045 107.7532855 2.032430521 -0.000004 98 16 SH381 381 Asn1 5' flank - tRNA3 5' flank 3 41.811897 220.238383 131.02514 2.117354632 -0.235353 98 17 SH6236 6236 snR42 5' 29.161505 151.550426 90.3559655 1.955956831 -0.054626 98 18 SH6489 6489 snR46 5' 31.307309 172.871225 102.089267 2.008980086 -0.030345 98 19 SH10288 10288 RUF7 RUF7 51 72 29.263512 167.51778 98.390646 1.992953812 -0.128526 98 20 SH5289 5289 snR30 snR30 296 311 35.695878 163.708218 99.702048 1.998704079 0.258342 98 21 SH16147 16147 YDR092W_4_629869_630598_INTRON_31_298 intron 40.041652 197.484909 40.041652 158.443257 99.2424545 1.996697497 0.451128 98 22 SH6206 6206 snR40 91-97 + 3' 91 29.479999 136.324831 82.902415 1.918567182 0.051259 98 23 SH3946 3946 RNase MRP RNaseMRP 146 163 29.533246 179.594672 104.563959 2.019382018 -0.178162 98 24 SH6371 6371 snR43 snR43 96 113 29.573801 163.733411 96.653606 1.985218062 -0.088127 98 25 SH6805 6805 snR52 5' 59.619989 215.504187 137.562088 2.138498759 0.060036 98 26 SH11879 11879 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6281 6298 1104.845179 815.66665 960.2559145 2.982386991 0.97748 98 27 SH10960 10960 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1686 1706 18895.87766 17845.26882 18370.57324 4.264122708 -0.221172 98 28 SH10405 10405 RUF8 5' 31.777527 166.142012 98.9597695 1.995458675 0.037863 98 29 SH19192 19192 YPL081W_16_404945_406039_INTRON_8_508 5' exon 36.049194 233.475917 36.049194 198.426723 117.2379585 2.069068247 -0.094192 98 30 SH8272 8272 snoRNA cluster4 snR67 42.448796 223.740186 42.448796 182.29139 112.370093 2.05065074 0.203885 98 31 SH13060 13060 MT COX1 cox1ai2/intronic 29.571971 177.498968 29.571971 148.926997 89.249484 1.950605714 -0.011472 98 32 SH15092 15092 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " orf1 / intronic 31.653419 184.23082 31.653419 153.577401 92.61541 1.966683254 0.104779 98 33 SH18979 18979 YOR096W_15_505793_506766_INTRON_145_545 intron 107.462677 361.92061 107.462677 255.457933 181.460305 2.258781637 0.242625 98 34 SH12130 12130 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7536 7552 27.273148 144.928815 86.1009815 1.935008102 -0.16031 98 35 SH9599 9599 RUF3 RUF3 381 400 33.553837 192.683982 113.1189095 2.05353521 -0.090788 98 36 SH12152 12152 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7646 7664 42.995023 215.539925 129.267474 2.111489262 -0.169103 98 37 SH16885 16885 YGL189C_7_148970_148233_INTRON_1_368 intron 35.514136 195.987159 35.514136 161.473023 98.4935795 1.993407921 0.274646 98 38 SH5544 5544 snR33 snR33 6 22 35.46235 155.497794 95.480072 1.979912738 0.310228 98 39 SH11262 11262 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S/ITS2 3196 3213 67.141298 199.863056 133.502177 2.125488348 0.311357 98 40 SH2647 2647 Pro4 5' flank 29.141892 176.249964 102.695928 2.011553224 -0.183999 98 41 SH10338 10338 RUF7 RUF7 301 320 29.186084 134.635401 81.9107425 1.913340863 0.039874 98 42 SH15032 15032 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.147902 188.202846 27.147902 162.054944 94.601423 1.975897669 -0.257403 98 43 SH17691 17691 YKL006W_11_431544_432358_INTRON_130_527 intron 29.349986 188.550968 29.349986 160.200982 94.775484 1.976696011 -0.086224 98 44 SH4605 4605 snR3 5' 33.70093 144.597208 89.149069 1.950116812 0.283667 98 45 SH14273 14273 MT VAR1 includes 5’ processing site VAR1 31.668932 266.057813 31.668932 235.388881 133.5289065 2.125575292 -0.557873 98 46 SH14291 14291 MT VAR1 includes 5’ processing site VAR1 31.73833 202.782019 31.73833 172.043689 101.8910095 2.008135865 0.000091 98 47 SH1492 1492 Leu3 5' flank 29.629625 186.778155 108.20389 2.034242874 -0.211918 98 48 SH2971 2971 Ser1 3' flank 29.613659 137.343749 83.478704 1.921575698 0.054983 98 49 SH21181 21181 YOL047C spliced 31.684585 159.430334 95.5574595 1.980264595 0.074283 98 50 SH7209 7209 snR64 3' 29.445714 122.711355 76.0785345 1.881262138 0.133087 98 51 SH17336 17336 YIL018W_9_316766_317930_INTRON_5_404 intron 29.304308 169.308307 29.304308 141.003999 85.1541535 1.930205836 0.01237 98 52 SH2368 2368 Phe3 3' flank 35.450594 160.321874 97.886234 1.99072162 0.278568 98 53 SH19757 19757 Negative Control 28.952961 148.250028 88.6014945 1.947441047 -0.052086 98 54 SH12999 12999 MT COX1 COX1ai2 30.837359 208.149901 30.837359 178.312542 104.5749505 2.019427668 -0.090106 98 55 SH16076 16076 YDR025W_4_491510_492319_INTRON_46_384 intron 34.758233 269.850927 34.758233 236.092694 135.4254635 2.131700331 -0.507079 98 56 SH20083 20083 YCR097W spliced 30.424913 140.706635 85.565774 1.932300083 0.093051 98 57 SH2253 2253 Phe1 3' flank 32.260786 188.848852 110.554819 2.043577678 -0.10394 98 58 SH8862 8862 LSR1 / U2 RNA U2 951 967 32.054304 160.294791 96.1745475 1.983060152 0.090476 98 59 SH505 505 Asp2 3' flank 29.846704 127.411817 78.6292605 1.895584191 0.129988 98 60 SH6503 6503 snR46 snR46 6 20 29.674478 149.160043 89.4172605 1.95142136 -0.005558 98 61 SH4931 4931 snR9 snR9 61 77 177.333976 375.935756 276.634866 2.441906916 0.046755 98 62 SH8426 8426 snoRNA cluster 5 intergenic 27.397435 141.360008 27.397435 114.962573 71.180004 1.852358008 0.03915 98 63 SH18895 18895 YOL120C_15_94401_93394_INTRON_113_559 intron 29.249312 185.287539 29.249312 157.038227 93.1437695 1.96915381 -0.077202 98 64 SH18783 18783 YNL301C_14_64561_63569_INTRON_113_544 5' exon 29.133997 178.443707 29.133997 150.30971 89.7218535 1.952898237 -0.049925 98 65 SH14030 14030 MT COB Exon4 30.979179 212.558118 30.979179 182.578939 106.779059 2.028486089 -0.105551 98 66 SH10081 10081 RUF6 RUF6 251 270 38.662664 200.40275 119.532707 2.077486755 -0.068647 98 67 SH18487 18487 YMR194W_13_651144_651909_INTRON_17_479 intron 30.725045 183.109782 30.725045 153.384737 92.054891 1.964046868 0.044018 98 68 SH7675 7675 snoRNA cluster1 snR78/intergenic 30.5764 184.369679 30.5764 154.793279 92.6848395 1.967008702 0.026549 98 69 SH3159 3159 Ser5 5' flank 30.410206 145.714251 88.0622285 1.944789672 0.064202 98 70 SH15628 15628 YBR181C_2_592732_591670_INTRON_7_358 intron 30.229206 190.787081 30.229206 161.557875 95.8935405 1.981789354 -0.031801 98 71 SH11829 11829 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6031 6048 25350.31813 25056.07204 25203.19508 4.401455601 -0.379616 98 72 SH3892 3892 RNaseP 3' 54.442405 199.882316 127.1623605 2.104358581 0.154993 98 73 SH14495 14495 MT 21S rRNA 21S rRNA3 35.29929 189.002115 35.29929 154.702825 95.0010575 1.97772844 0.30682 98 74 SH1686 1686 Leu6 5' flank - tRNA 11 11 93.269003 248.011213 170.640108 2.232081117 0.164057 98 75 SH20075 20075 YCR031C spliced 40.52409 214.362991 127.4435405 2.105317828 -0.194319 98 76 SH20754 20754 YJR021C spliced 31.11074 179.818965 105.4648525 2.02310775 -0.082153 98 77 SH4506 4506 U3b (snR17b) U3b 86 103 49.493111 174.0615 111.7773055 2.048353636 0.401602 98 78 SH18831 18831 YNL302C_14_62942_61957_INTRON_21_571 intron 32.776318 190.127196 32.776318 158.350878 95.563598 1.980292493 0.144513 98 79 SH11387 11387 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3821 3841 29318.25666 12438.84881 20878.55273 4.319700391 0.921721 98 80 SH17047 17047 YGR214W_7_920570_921783_INTRON_91_545 intron 34.478286 214.389912 34.478286 180.911626 107.694956 2.032195363 0.048152 98 81 SH9523 9523 RUF3 RUF3 1 18 31.674737 186.474894 109.0748155 2.037724487 -0.104555 98 82 SH2834 2834 Pro7 5' flank 28.887665 175.827702 102.3576835 2.010120449 -0.197942 98 83 SH3569 3569 Tyr2 3' flank 29.759691 156.125912 92.9428015 1.968215759 -0.036582 98 84 SH17750 17750 YKL157W_11_154993_158183_INTRON_282_664 intron 34.285942 221.021744 34.285942 187.735802 111.010872 2.045365514 -0.021031 98 85 SH1563 1563 Leu4 5' flank - tRNA3 3 28.814531 152.848707 90.831619 1.958237055 -0.086377 98 86 SH18365 18365 YMR079W_13_424988_426058_INTRON_10_165 exon/intron 28.828495 185.445416 28.828495 157.616921 93.222708 1.969521714 -0.110256 98 87 SH20593 20593 YHR039C-A spliced 32.514494 187.329626 109.92206 2.041084859 -0.080926 98 88 SH12199 12199 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7881 7899 30.758948 155.443547 93.1012475 1.9689555 0.035506 98 89 SH16380 16380 YER007C-A_5_166884_166236_INTRON_12_114 exon/intron 29.020468 178.853017 29.020468 150.832549 89.9265085 1.953887732 -0.060841 98 90 SH14098 14098 MT COB Cytbi4 31.890807 190.151628 31.890807 159.260821 95.575814 1.980348006 0.087492 98 91 SH13013 13013 MT COX1 COX1ai2 55.212155 273.515661 55.212155 219.303506 137.2578305 2.13753713 -0.035412 98 92 SH647 647 Gln2 tRNA 21 38 38.685646 155.140347 96.9129965 1.986382022 0.445406 98 93 SH9479 9479 RUF2 RUF2 236 254 33.258527 180.402507 106.830517 2.02869533 0.009759 98 94 SH11508 11508 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4426 4444 11693.90732 3942.123802 7818.015562 3.893096531 1.560196 98 95 SH10733 10733 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 551 568 31.629318 162.376172 97.002745 1.986784024 0.052418 98 96 SH12833 12833 MT COX1 COX1ai1 29.81941 203.938231 29.81941 175.118821 102.4691155 2.010592987 -0.134494 98 97 SH18765 18765 YNL246W_14_185459_186348_INTRON_33_127 5' exon 135.43924 468.468256 135.43924 334.029016 234.734128 2.370576236 -0.02817 98 98 SH15901 15901 YDL083C_4_307788_306925_INTRON_25_456 intron 31.744668 222.626707 31.744668 191.882039 111.8133535 2.048493673 -0.150148 98 99 SH16890 16890 YGL189C_7_148970_148233_INTRON_1_368 3' exon 33.610089 232.204571 33.610089 199.594482 116.6022855 2.066707063 -0.156537 98 100 SH19318 19318 YPL198W_16_173151_174701_INTRON_12_420 intron 30.742921 182.13354 30.742921 152.390619 91.56677 1.961737895 0.050493 98 101 SH16501 16501 YER117W_5_396765_397649_INTRON_43_513 intron 41.081924 267.397335 41.081924 227.315411 134.1986675 2.127748204 -0.317705 98 102 SH3921 3921 RNase MRP RNaseMRP 21 38 35.377448 187.390959 111.3842035 2.046823604 0.017126 98 103 SH4113 4113 SRP RNA SRP RNA 456 468 34.409379 172.830535 103.619957 2.015443408 0.122867 98 104 SH12546 12546 MT_ORF6 + ORF7 (hypothetical) 3' 29.674391 191.662175 29.674391 162.987784 96.3310875 1.983766463 -0.077383 99 2 SH15525 15525 YBR048W_2_332790_333771_INTRON_46_556 intron 34.028463 197.935449 34.028463 164.906986 99.4677245 1.997682183 0.173381 99 3 SH21494 21494 copy of SH2287 31.942426 190.414926 111.178676 2.046021498 -0.129756 99 4 SH14202 14202 MT COB 3' 29.850333 181.84316 29.850333 152.992827 91.42158 1.961048723 -0.013848 99 5 SH7923 7923 snoRNA cluster1 snR72 32.072154 209.29161 32.072154 178.219456 105.145805 2.02179195 -0.016181 99 6 SH19351 19351 YPL249C-A_16_76239_75699_INTRON_17_254 intron 32.114653 187.355824 32.114653 156.241171 94.177912 1.973949058 0.120016 99 7 SH9610 9610 RUF3 3' 29.968995 139.894988 84.9319915 1.929071308 0.065761 99 8 SH17395 17395 YIL069C_9_232366_231550_INTRON_4_412 intron 29.960328 214.839899 29.960328 185.879571 107.9199495 2.033101733 -0.186269 99 9 SH4245 4245 telomerase RNA telomerase 261 277 38.568157 159.581899 99.075028 1.995964204 0.394131 99 10 SH10147 10147 RUF6 RUF6 581 598 34.150944 198.572522 116.361733 2.065810181 -0.134063 99 11 SH1901 1901 Lys1 5' flank 31.876241 143.249292 87.5627665 1.942319474 0.175734 99 12 SH18710 18710 YNL130C_14_381156_379555_INTRON_30_470 intron 27.460041 181.693587 27.460041 155.233546 91.3467935 1.960693307 -0.199455 99 13 SH676 676 Gln3 5' flank 29.450524 129.812502 79.631513 1.901084967 0.087298 99 14 SH6060 6060 snR37 snR37 216 235 31.43053 182.842275 107.1364025 2.029937059 -0.08063 99 15 SH7393 7393 snR68 3' 323.77627 527.652163 425.7142165 2.629118153 0.162052 99 16 SH14170 14170 MT COB intronic 29.129746 179.241005 29.129746 151.111259 90.1205025 1.954823605 -0.054536 99 17 SH21013 21013 YML124C spliced 50.15983 214.93924 132.549535 2.122378209 -0.060958 99 18 SH469 469 Asp2 5' flank 31.205914 177.837104 104.521509 2.019205671 -0.065183 99 19 SH19415 19415 YPR132W_16_794960_795762_INTRON_66_430 5' exon 37.561256 207.830134 37.561256 171.268878 104.415067 2.018763171 0.243175 99 20 SH6593 6593 snR47 snR47 71 89 37.625785 176.841926 107.2338555 2.030331921 0.186907 99 21 SH21131 21131 YNL130C spliced 35.581093 205.52759 120.5543415 2.081182855 -0.180015 99 22 SH10789 10789 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 831 851 33.525609 189.169993 111.347801 2.046681645 -0.060738 99 23 SH885 885 Glu3 5' flank 33.574816 176.764279 105.1695475 2.021890005 0.055477 99 24 SH4474 4474 U3b (snR17b) 5' 31.493565 181.620669 106.557117 2.027582462 -0.06942 99 25 SH994 994 Gly2 5' flank 29.401827 170.96529 100.1835585 2.000796454 -0.136469 99 26 SH6348 6348 snR43 5' 31.547933 157.685792 94.6168625 1.975968543 0.076465 99 27 SH21568 21568 copy of SH5228 36.884203 182.881164 109.8826835 2.040929257 0.099689 99 28 SH19582 19582 AEP2/ATP13 0.6 31.576223 186.936607 109.256415 2.038446946 -0.11246 99 29 SH18307 18307 YML073C_13_124172_123227_INTRON_16_430 intron 33.703441 205.330794 33.703441 172.627353 103.165397 2.013534054 0.10002 99 30 SH1118 1118 Gly4 66-72 + 3' flank 66 29.439461 146.231535 87.835498 1.943670068 -0.006308 99 31 SH7467 7467 snR71 5' 29.415622 152.92762 91.171621 1.959859676 -0.043948 99 32 SH21198 21198 YOL121C spliced 31.499988 172.106814 101.803401 2.007762287 -0.014373 99 33 SH20081 20081 YCR031C spliced 31.450091 167.960636 99.7053635 1.998718521 0.00744 99 34 SH8298 8298 snoRNA cluster4 intergenic 27.167602 164.783331 27.167602 138.615729 82.8916655 1.918510866 -0.13352 99 35 SH8845 8845 LSR1 / U2 RNA U2 866 883 30.276894 143.190179 86.7335365 1.938187055 0.069145 99 36 SH17735 17735 YKL156W_11_158616_159214_INTRON_4_353 intron 29.16902 171.277301 29.16902 143.108281 86.1386505 1.935198064 -0.00892 99 37 SH14797 14797 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys 33.331433 221.8953 33.331433 189.563867 111.44765 2.047070915 -0.071206 99 38 SH16996 16996 YGR118W_7_726968_727725_INTRON_66_385 intron 31.201114 231.390944 31.201114 201.18983 116.195472 2.065189204 -0.250769 99 39 SH540 540 Cys1 tRNA 1 13 131.140085 299.29889 215.2194875 2.332881593 0.141944 99 40 SH7822 7822 snoRNA cluster1 intergenic 31.234588 173.967146 31.234588 143.732558 87.483573 1.941926512 0.130804 99 41 SH8333 8333 snoRNA cluster4 snR53 60.923172 276.423149 60.923172 216.499977 138.7115745 2.142112701 0.06664 99 42 SH18168 18168 YLR448W_12_1028848_1029762_INTRON_16_399 intron 263.899099 722.80074 263.899099 459.901641 361.90037 2.558589027 0.148761 99 43 SH3619 3619 Val1 3' flank 29.387372 126.14559 77.766481 1.890792447 0.106133 99 44 SH8663 8663 LSR1 / U2 RNA 5' 27.367281 119.286995 73.327138 1.865264735 0.006054 99 45 SH4748 4748 snR5 5' 36.000709 143.410342 89.7055255 1.952819195 0.420611 99 46 SH4201 4201 telomerase RNA telomerase 41 55 31.792926 177.336468 104.564697 2.019385083 -0.027481 99 47 SH5005 5005 snR10 snR10 56 68 38.251564 175.157339 106.7044515 2.028182538 0.219423 99 48 SH21172 21172 YNL312W spliced 101.774654 279.860434 190.817544 2.280618302 0.015248 99 49 SH20474 20474 YGL189C spliced 31.705759 192.819689 112.262724 2.050235576 -0.159843 99 50 SH18953 18953 YOL127W_15_80347_81189_INTRON_14_427 intron 31.576872 206.284197 31.576872 175.707325 103.6420985 2.015536198 -0.030851 99 51 SH1513 1513 Leu3 tRNA-exon/intron 36 52 31.411315 183.449644 107.4304795 2.031127514 -0.086959 99 52 SH13934 13934 MT COB Cytbi3 29.119624 155.878514 29.119624 127.75889 78.439257 1.894533471 0.076778 99 53 SH3754 3754 Val4 5' flank - tRNA10 10 213.167281 389.38021 301.2737455 2.478961287 0.19019 99 54 SH17284 17284 YHR141C_8_382752_381991_INTRON_5_445 intron 28.740429 141.333723 28.740429 113.593294 71.1668615 1.852277814 0.147273 99 55 SH8795 8795 LSR1 / U2 RNA U2 616 635 28.552246 117.619364 73.085805 1.863833035 0.10484 99 56 SH6325 6325 snR42 3' 30.416924 142.72681 86.571867 1.937376784 0.081389 99 57 SH4309 4309 telomerase RNA telomerase 581 599 50.64078 270.625272 160.633026 2.205834841 -0.54604 99 58 SH15056 15056 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.042709 215.606809 30.042709 186.5641 108.3034045 2.034642109 -0.184871 99 59 SH8798 8798 LSR1 / U2 RNA U2 631 647 31.877143 166.328037 99.10259 1.996085005 0.042577 99 60 SH17778 17778 YKL180W_11_109271_110131_INTRON_310_615 intron 29.695128 170.4708 29.695128 141.775672 85.7354 1.933160178 0.036019 99 61 SH21655 21655 copy of SH8990 83.58903 267.524607 175.5568185 2.244417702 -0.086043 99 62 SH2226 2226 Phe1 tRNA 6 20 33.349064 147.965843 90.6574535 1.957403516 0.24323 99 63 SH6252 6252 snR42 snR42 41 55 179.662299 374.236416 276.9493575 2.442400362 0.069175 99 64 SH15491 15491 YBL092W_2_45639_46364_INTRON_1_333 intron 29.126701 166.782086 29.126701 138.655385 83.891043 1.923715594 0.012656 99 65 SH2824 2824 Pro7 5' flank 30.963417 172.390641 101.677029 2.007222848 -0.048164 99 66 SH11970 11970 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6736 6756 3313.122454 2210.003259 2761.562857 3.441154933 0.837223 99 67 SH4662 4662 snR3 3' 28.767951 135.872847 82.320399 1.915507467 0.002353 99 68 SH14610 14610 MT 21S rRNA Sce1 endonuc 42.164522 240.103121 42.164522 198.938599 120.5515605 2.081172837 0.000145 99 69 SH19197 19197 YPL081W_16_404945_406039_INTRON_8_508 intron 28.484881 183.798328 28.484881 156.313447 92.399164 1.965668042 -0.128414 99 70 SH7112 7112 snR63 snR63 66 83 29.276311 137.838952 83.5576315 1.921986121 0.028049 99 71 SH18036 18036 YLR333C_12_796335_795573_INTRON_1_423 5' exon 30.046226 167.226382 30.046226 138.180156 84.113191 1.924864109 0.080793 99 72 SH6900 6900 snR56 3' 27.972934 165.344341 96.6586375 1.985240669 -0.211552 99 73 SH10417 10417 RUF8 RUF8 11 28 31.548892 174.325523 102.9372075 2.012572382 -0.024487 99 74 SH13656 13656 MT ATP6 ATP6 29.503643 172.647424 29.503643 144.143781 86.823712 1.938638349 0.009485 99 75 SH11917 11917 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6471 6487 117.567673 248.541114 183.0543935 2.262580157 0.382581 99 76 SH19408 19408 YPR098C_16_729525_728944_INTRON_48_143 intron 31.068316 249.461613 31.068316 219.393297 125.2308065 2.097711177 -0.418154 99 77 SH5798 5798 snR35 snR35 176 200 30.953285 181.70051 106.3268975 2.026643142 -0.102215 99 78 SH4799 4799 snR5 snR5 166 183 29.024353 129.310115 79.167234 1.898545472 0.060036 99 79 SH6871 6871 snR56 5' - 5 -14 5 34.43518 141.403678 87.919429 1.944084859 0.346489 99 80 SH7916 7916 snoRNA cluster1 intergenic/snR72 54.492986 257.99061 54.492986 204.497624 129.495305 2.112254023 0.105459 99 81 SH3761 3761 Val4 tRNA 31 43 30.63545 167.882787 99.2591185 1.996770414 -0.041149 99 82 SH2133 2133 Met1 tRNA 51 65 28.757591 145.244837 87.001214 1.939525313 -0.050386 99 83 SH17469 17469 YIL148W_9_68708_69528_INTRON_9_442 3' exon 28.706989 168.515624 28.706989 140.808635 84.757812 1.928179737 -0.029922 99 84 SH20428 20428 YGL033W spliced 35.916185 172.747717 104.331951 2.018417329 0.175018 99 85 SH13778 13778 MT COB intronic 30.457357 206.350169 30.457357 176.892812 103.6750845 2.015674398 -0.105163 99 86 SH4379 4379 telomerase RNA telomerase 931 943 474.373586 654.161945 564.2677655 2.751485241 0.272855 99 87 SH21335 21335 YPR063C spliced 26.86965 125.532514 76.201082 1.881961138 -0.074037 99 88 SH4648 4648 snR3 snR3 156 172 32.36817 181.196311 106.7822405 2.028499029 -0.030156 99 89 SH8073 8073 snoRNA cluster 2 snR61 50.730461 265.755973 50.730461 216.025512 133.3779865 2.125084157 -0.064261 99 90 SH15606 15606 YBR119W_2_479296_480281_INTRON_9_97 intron 28.936196 168.124287 28.936196 140.188091 84.5621435 1.927175983 -0.009731 99 91 SH7583 7583 snR189 5' - 8 -14 8 34.584019 195.64321 115.1136145 2.061126691 -0.09278 99 92 SH14501 14501 MT 21S rRNA 21S rRNA3 137.175598 489.89732 137.175598 353.721722 245.44866 2.389960665 -0.119873 99 93 SH10798 10798 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS/18S 876 897 29.38039 129.479429 79.4299095 1.899984068 0.084279 99 94 SH14908 14908 MT tRNA Tyr 5' 31.395149 195.621047 31.395149 165.225898 98.3105235 1.992600009 0.02085 99 95 SH9018 9018 snR17a / U3a U3a 376 394 27.787158 142.542021 85.1645895 1.930259057 -0.108045 99 96 SH1824 1824 Leu8 3' flank 29.757663 164.526284 97.1419735 1.987406922 -0.079178 99 97 SH8452 8452 snoRNA cluster 5 snR128 29.819412 178.096078 29.819412 149.276666 89.548039 1.95205608 0.00392 99 98 SH20330 20330 YER074W spliced 29.844824 175.073233 102.4590285 2.010550234 -0.132637 99 99 SH19684 19684 Negative Control 31.725872 182.072367 106.8991195 2.028974128 -0.062305 99 100 SH16893 16893 YGL226C-A_7_73156_72747_INTRON_22_170 5' exon 29.813236 185.599306 29.813236 156.78607 93.299653 1.969880029 -0.036269 99 101 SH3172 3172 Ser5 5' flank 27.89249 153.665287 90.7788885 1.957984861 -0.158633 99 102 SH1062 1062 Gly3 tRNA 46 58 79.109828 173.081965 126.0958965 2.100700954 0.742917 99 103 SH9156 9156 snR7 U5 RNA U5 51 65 33.479833 145.041483 89.260658 1.950660084 0.267522 99 104 SH13439 13439 MT COX1 intronic 29.681734 181.023694 29.681734 152.34196 91.011847 1.959097928 -0.02215 100 2 SH13557 13557 MT COX1 Exon 6 31.927871 196.596798 31.927871 165.668927 98.798399 1.994749907 0.049584 100 3 SH4086 4086 SRP RNA SRP RNA 321 335 98.191011 268.982513 183.586762 2.263841362 0.056163 100 4 SH14686 14686 MT 21S rRNA 21S rRNA4 40.741002 212.087797 40.741002 172.346795 106.5438985 2.027528584 0.29926 100 5 SH5031 5031 snR10 snR10 186 202 32.112812 139.106501 85.6096565 1.932522754 0.214852 100 6 SH7907 7907 snoRNA cluster1 intergenic 29.984517 178.578368 29.984517 149.593851 89.789184 1.953224025 0.01366 100 7 SH16353 16353 YDR500C_4_1450856_1450201_INTRON_8_396 intron 30.002407 195.892006 30.002407 166.889599 98.446003 1.993198088 -0.074154 100 8 SH20627 20627 YHR123W spliced 29.992666 187.062943 108.5278045 2.035541017 -0.1907 100 9 SH5686 5686 snR34 snR34 351 363 32.111577 191.582641 111.847109 2.048624763 -0.133746 100 10 SH17728 17728 YKL156W_11_158616_159214_INTRON_4_353 intron 32.02441 226.263734 32.02441 195.239324 113.631867 2.055500142 -0.168907 100 11 SH6309 6309 snR42 snR42 326 340 43.736908 215.978771 129.8578395 2.113468173 -0.162807 100 12 SH18476 18476 YMR143W_13_551927_552902_INTRON_25_568 intron 30.674104 177.343047 30.674104 147.668943 89.1715235 1.950226187 0.071339 100 13 SH6165 6165 snR39B 3' 29.446015 159.500382 94.4731985 1.975308619 -0.075895 100 14 SH16512 16512 YER117W_5_396765_397649_INTRON_43_513 intron 32.462682 175.745735 32.462682 144.283053 88.3728675 1.946318947 0.207742 100 15 SH19012 19012 YOR182C_15_678792_678190_INTRON_4_414 intron 266.94659 681.455351 266.94659 415.508761 341.2276755 2.533044248 0.335917 100 16 SH13153 13153 MT COX1 intronic 29.055947 206.275795 29.055947 178.219848 103.6378975 2.015518594 -0.200813 100 17 SH18059 18059 YLR333C_12_796335_795573_INTRON_1_423 intron/exon 31.090762 199.532866 31.090762 169.442104 100.266433 2.001155565 -0.022964 100 18 SH2039 2039 Lys3 3' flank 31.069456 187.815595 109.4425255 2.039186106 -0.139757 100 19 SH13212 13212 MT COX1 COX1-ai4 28.988148 201.179639 28.988148 173.191491 101.0898195 2.004707421 -0.176102 100 20 SH7546 7546 snR79 71-84 +3' 71 31.111676 176.540299 103.8259875 2.01630607 -0.063401 100 21 SH12128 12128 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7526 7544 29.054205 140.373355 84.71378 1.927954061 -0.002189 100 22 SH6547 6547 snR46 3' 29.091091 166.946307 98.018699 1.991308934 -0.138022 100 23 SH16078 16078 YDR025W_4_491510_492319_INTRON_46_384 intron 29.1242 186.249257 29.1242 158.125057 93.6246285 1.971390107 -0.091685 100 24 SH20119 20119 YDL075W spliced 34.415597 163.014573 98.715085 1.994383524 0.206255 100 25 SH18772 18772 YNL246W_14_185459_186348_INTRON_33_127 3' exon 56.645845 288.760591 56.645845 233.114746 144.8802955 2.161009323 -0.145812 100 26 SH1619 1619 Leu5 5' flank 29.201492 139.246008 84.22375 1.925434574 0.014745 100 27 SH12577 12577 MT_15S MT_15S 33.441154 204.889557 33.441154 172.448403 102.9447785 2.012604324 0.092411 100 28 SH16516 16516 YER117W_5_396765_397649_INTRON_43_513 intron/exon 27.127959 150.53602 27.127959 124.408061 75.76801 1.879485881 -0.046904 100 29 SH90 90 Ala2 3' flank 29.24435 177.094885 103.1696175 2.01355182 -0.182297 100 30 SH18481 18481 YMR143W_13_551927_552902_INTRON_25_568 3' exon 44.044123 226.641896 44.044123 183.597773 113.820948 2.056222198 0.209708 100 31 SH14637 14637 MT 21S rRNA Sce1 endonuc 31.339005 202.822246 31.339005 172.483241 101.911123 2.008221587 -0.02617 100 32 SH13053 13053 MT COX1 COX1ai2 29.205777 177.749643 29.205777 149.543866 89.3748215 1.951215187 -0.04068 100 33 SH2753 2753 Pro5 3' flank 31.279099 166.624487 98.951793 1.995423668 0.005363 100 34 SH8708 8708 LSR1 / U2 RNA U2 181 197 31.238387 158.6347 94.9365435 1.977433416 0.051142 100 35 SH2868 2868 Pro7 3' flank 29.096302 135.39674 82.246521 1.915117537 0.028991 100 36 SH118 118 Arg1 5' flank 29.061391 173.285345 101.173368 2.005066208 -0.171935 100 37 SH20723 20723 YJL177W spliced 35.329071 161.474932 98.4020015 1.993003932 0.264867 100 38 SH14364 14364 MT ORF9 and ORF10 (hypothetical) ORF9 26.93834 188.161303 26.93834 162.222963 94.5806515 1.975802301 -0.274324 100 39 SH9343 9343 RUF1 RUF1 291 308 31.148829 168.758539 99.953684 1.999798806 -0.015369 100 40 SH12874 12874 MT COX1 COX1ai1 33.303123 230.941668 33.303123 198.638545 115.970834 2.06434878 -0.152572 100 41 SH5714 5714 snR34 snR34 491 506 33.392273 192.074278 112.7332755 2.052052126 -0.091222 100 42 SH6368 6368 snR43 snR43 81 95 35.624563 184.713483 110.169023 2.042059498 0.052236 100 43 SH15479 15479 YBL091C-A_2_46858_46559_INTRON_35_122 3' exon 35.76307 250.656088 35.76307 215.893018 125.828044 2.099777446 -0.285579 100 44 SH18195 18195 YML024W_13_225889_226697_INTRON_4_401 intron 31.634353 212.318252 31.634353 181.683899 106.659126 2.027998021 -0.062162 100 45 SH1564 1564 Leu4 5' flank - tRNA9 9 30.66427 146.383267 88.5237685 1.947059894 0.077757 100 46 SH15867 15867 YDL079C_4_314747_312950_INTRON_413_704 intron 578.955199 1297.118191 578.955199 719.162992 649.0590955 2.81228424 0.366341 100 47 SH12994 12994 MT COX1 COX1ai2 27.523828 156.800829 27.523828 130.277001 78.9004145 1.897079285 -0.055311 100 48 SH574 574 Gln1 5' flank 29.622973 155.958027 92.7905 1.967503515 -0.045266 100 49 SH14275 14275 MT VAR1 includes 5’ processing site VAR1 31.664417 253.927907 31.664417 223.26349 127.4639535 2.105387385 -0.442793 100 50 SH1438 1438 Leu2 5' flank 31.522219 186.802451 109.162335 2.038072817 -0.113299 100 51 SH11616 11616 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4966 4983 3497.612559 2309.792171 2903.702365 3.462952098 0.838931 100 52 SH10889 10889 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1331 1348 176.671558 386.395603 281.5335805 2.449530204 -0.006407 100 53 SH5596 5596 snR34 5' 33.040668 153.885776 93.463222 1.970640749 0.18859 100 54 SH16857 16857 YGL187C_7_150529_149708_INTRON_1_342 5' exon 29.723372 225.925371 29.723372 197.201999 113.4626855 2.054853058 -0.275109 100 55 SH4011 4011 SRP RNA 5' 30.569986 143.18047 86.875228 1.938895957 0.089288 100 56 SH9015 9015 snR17a / U3a U3a 361 379 28.343414 125.947195 77.1453045 1.887309498 0.033048 100 57 SH3908 3908 RNase MRP 5' 32.250627 136.068552 84.1595895 1.925103608 0.241627 100 58 SH4370 4370 telomerase RNA telomerase 886 903 30.045468 163.48888 96.767174 1.985728058 -0.054079 100 59 SH9037 9037 snR17a / U3a U3a 471 486 91.735367 256.742134 174.2387505 2.241144748 0.081378 100 60 SH18523 18523 YMR225C_13_721402_720959_INTRON_59_205 intron 39.73891 206.258292 39.73891 167.519382 103.629146 2.015481919 0.343514 100 61 SH5311 5311 snR30 snR30 406 422 31.549501 159.210306 95.3799035 1.979456879 0.067699 100 62 SH6093 6093 snR37 381-386 + 3' 381 29.407649 165.518958 97.4633035 1.988841128 -0.108606 100 63 SH12938 12938 MT COX1 COX1ai2 29.267393 215.237747 29.267393 186.970354 108.1188735 2.033901512 -0.235958 100 64 SH735 735 Gln4 5' flank 38.967485 176.309687 107.638586 2.031967984 0.218261 100 65 SH15324 15324 YAL003W_1_142172_143158_INTRON_81_446 intron 29.016449 173.483252 29.016449 145.466803 87.241626 1.940723751 -0.032703 100 66 SH1456 1456 Leu2 tRNA-intron 51 65 38.648859 193.149504 115.8991815 2.064080369 0.013778 100 67 SH17638 17638 YJR145C_10_702761_701720_INTRON_15_270 5' exon 42.380757 235.006399 42.380757 193.625642 118.0031995 2.071893783 0.065076 100 68 SH7625 7625 snR189 3' 30.583959 147.870661 89.22731 1.9504978 0.064125 100 69 SH7959 7959 snoRNA cluster 2 5' 28.512618 170.196742 28.512618 142.684124 85.598371 1.9324655 -0.054542 100 70 SH20447 20447 YGL103W spliced 34.092999 178.158446 106.1257225 2.02582066 0.060567 100 71 SH10844 10844 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1106 1126 616.524655 882.249157 749.386906 2.8747061 0.11206 100 72 SH17484 17484 YJL024C_10_396288_395627_INTRON_23_99 exon/intron 28.0095 165.002556 28.0095 137.993056 83.001278 1.919084779 -0.065985 100 73 SH9350 9350 RUF1 RUF1 326 344 40.980714 150.294226 95.63747 1.980628079 0.567999 100 74 SH16666 16666 YFR032C-A_6_223758_223245_INTRON_1_331 intron 33.251959 193.897681 33.251959 161.645722 97.4488405 1.988776676 0.150523 100 75 SH14633 14633 MT 21S rRNA Sce1 endonuc 31.205275 188.391911 31.205275 158.186636 94.6959555 1.976331431 0.051232 100 76 SH12434 12434 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.200464 201.808625 29.200464 173.608161 101.4043125 2.006056425 -0.164901 100 77 SH21001 21001 YML085C spliced 35.501508 194.184643 114.8430755 2.060104814 -0.057958 100 78 SH2308 2308 Phe2 3' flank 34.448926 141.401074 87.925 1.944112377 0.347332 100 79 SH5427 5427 snR31 snR31 201 217 34.333352 140.370137 87.3517445 1.941271583 0.346286 100 80 SH7182 7182 snR64 5' 1549.022012 1380.997789 1465.009901 3.16584056 0.57386 100 81 SH13500 13500 MT COX1 intronic 28.695423 204.549524 28.695423 176.854101 102.774762 2.01188648 -0.216337 100 82 SH21901 21901 copy of SH19201 30.429542 154.301224 92.365383 1.965509235 0.019136 100 83 SH20126 20126 YDL082W spliced 73.874358 233.154458 153.514408 2.186149142 0.075206 100 84 SH7427 7427 snR69 snR69 36 52 41.126901 175.437329 108.282115 2.03455673 0.267222 100 85 SH12112 12112 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7446 7463 2062.288559 2280.768554 2171.528557 3.336765545 0.162489 100 86 SH10092 10092 RUF6 RUF6 306 325 32.960306 176.555492 104.757899 2.02018678 0.035343 100 87 SH20978 20978 YML056C spliced 30.283506 156.333045 93.3082755 1.969920163 -0.001445 100 88 SH10834 10834 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1056 1076 50.224814 189.73995 119.982382 2.07911748 0.216512 100 89 SH8128 8128 snoRNA cluster 3; snR41 37.669579 215.127696 37.669579 178.458117 108.063848 2.033680428 0.167916 100 90 SH17617 17617 YJR021C_10_469271_468247_INTRON_317_396 intron/exon 41.463767 230.723778 41.463767 190.260011 115.861889 2.063940605 0.09202 100 91 SH18848 18848 YNL312W_14_48286_49215_INTRON_8_115 intron 30.706066 221.324971 30.706066 191.618905 111.1624855 2.045958249 -0.187681 100 92 SH13815 13815 MT COB Cytbi2 29.048336 197.994993 29.048336 169.946657 99.4974965 1.997812153 -0.155504 100 93 SH2591 2591 Pro3 5' flank 31.995431 161.336029 96.66573 1.985272535 0.080461 100 94 SH1776 1776 Leu8 5' flank 33.116574 173.482483 103.2995285 2.014098339 0.070638 100 95 SH21869 21869 copy of SH18599 33.29488 204.264923 118.7799015 2.074742961 -0.213578 100 96 SH1936 1936 Lys1 3' flank 29.687964 135.597459 82.6427115 1.917204558 0.070233 100 97 SH372 372 Asn1 5' flank 29.778087 156.210168 92.9941275 1.968455524 -0.035736 100 98 SH2096 2096 Lys4 3' flank 31.712866 121.030161 76.3715135 1.882931397 0.297763 100 99 SH14924 14924 MT tRNA Tyr 3' 29.842042 196.065479 29.842042 167.223437 98.5327395 1.993580558 -0.086474 100 100 SH13059 13059 MT COX1 COX1ai2 52.542707 257.014931 52.542707 205.472224 129.0074655 2.110614843 0.069953 100 101 SH7027 7027 snR62 5' 41.137735 200.802823 120.970279 2.082678682 -0.035965 100 102 SH9832 9832 RUF5-1 5' 168.616511 305.773586 237.1950485 2.375105619 0.3643 100 103 SH1871 1871 Leu9 96-101 + 3' flank 96 27.841424 116.160142 72.000783 1.857337219 0.063455 100 104 SH18574 18574 YNL044W_14_545264_545873_INTRON_25_103 5' exon 35.381691 221.574306 35.381691 187.192615 111.287153 2.046445032 0.019517 101 2 SH6137 6137 snR39B snR39B 26 42 36.287225 198.991142 117.6391835 2.070552002 -0.095722 101 3 SH6096 6096 snR37 3' 38.513541 166.591361 102.552451 2.010946044 0.319895 101 4 SH19370 19370 YPR028W_16_623522_624197_INTRON_52_184 3' exon 29.892539 213.29412 29.892539 184.401581 107.14706 2.029980259 -0.182393 101 5 SH16131 16131 YDR064W_4_579453_580447_INTRON_22_560 intron 29.940203 182.011148 29.940203 153.070945 91.505574 1.96144755 -0.008023 101 6 SH20084 20084 YCR097W spliced 29.974947 153.162987 91.568967 1.961748315 -0.006103 101 7 SH17714 17714 YKL081W_11_282533_284097_INTRON_206_531 intron 31.073116 201.625017 31.073116 171.551901 101.3125085 2.005663069 -0.036598 101 8 SH18538 18538 YMR230W_13_732413_733140_INTRON_53_462 intron 32.14246 179.622774 32.14246 148.480314 90.311387 1.955742512 0.163939 101 9 SH16756 16756 YGL076C_7_365994_364333_INTRON_565_1032 3' exon 32.091328 204.147006 32.091328 173.055678 102.573503 2.011035187 0.014809 101 10 SH1374 1374 Leu1 5' flank 31.998574 167.899941 99.9492575 1.999779572 0.040128 101 11 SH13111 13111 MT COX1 COX1ai3 31.86484 228.080423 31.86484 197.215583 114.5402115 2.058957981 -0.191886 101 12 SH6221 6221 snR40 3' 31.697846 182.299772 106.998809 2.029378944 -0.06547 101 13 SH15091 15091 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.451074 182.792098 30.451074 153.341024 91.896049 1.96329684 0.025661 101 14 SH9221 9221 snR6 / U6 RNA 5' 29.217917 148.000514 88.6092155 1.947478892 -0.031588 101 15 SH5683 5683 snR34 snR34 336 352 37.467578 139.159265 88.3134215 1.946026711 0.525842 101 16 SH11751 11751 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5641 5658 24589.00514 12576.97698 18582.99106 4.269115618 0.676262 101 17 SH19962 19962 YBL059W spliced 45.575146 206.916858 126.246002 2.101217634 -0.040206 101 18 SH10801 10801 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 891 908 15309.07583 11380.73813 13344.90698 4.125315551 0.221612 101 19 SH4970 4970 snR9 3' 44.452779 187.307828 115.8803035 2.064009624 0.169532 101 20 SH14916 14916 MT tRNA Tyr tRNA 30.912734 202.039736 30.912734 172.127002 101.519868 2.006551044 -0.049672 101 21 SH4104 4104 SRP RNA SRP RNA 411 423 37.192076 170.513745 103.8529105 2.016418672 0.2388 101 22 SH11923 11923 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6501 6514 37.223126 158.794457 98.0087915 1.991265034 0.359955 101 23 SH15001 15001 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.901075 189.303962 28.901075 161.402887 95.151981 1.978417834 -0.124266 101 24 SH20747 20747 YJL205C-A spliced 28.922314 149.021631 88.9719725 1.949253219 -0.058362 101 25 SH14715 14715 MT tRNA cys; tRNA his 5' 31.031994 217.752851 31.031994 187.720857 109.3764255 2.038923726 -0.140351 101 26 SH7737 7737 snoRNA cluster1 intergenic 31.054618 206.969192 31.054618 176.914574 103.984596 2.016969009 -0.068985 101 27 SH2677 2677 Pro4 tRNA-intron 51 65 628.228833 897.16293 762.6958815 2.882351401 0.108459 101 28 SH886 886 Glu3 5' flank 31.096708 158.727352 94.91203 1.977321262 0.041235 101 29 SH1004 1004 Gly2 tRNA 11 30 31.110802 136.17827 83.644536 1.922437576 0.165495 101 30 SH6481 6481 snR45 3' 26.928403 154.003094 90.4657485 1.956484181 -0.234428 101 31 SH16071 16071 YDR005C_4_458099_456832_INTRON_7_86 3' exon 64.777451 301.742406 64.777451 237.964955 151.371203 2.180043262 -0.078438 101 32 SH13671 13671 MT ATP6 ATP6 29.006543 219.530707 29.006543 191.524164 110.2653535 2.042439074 -0.277142 101 33 SH8254 8254 snoRNA cluster4 5' 31.080742 210.475829 31.080742 180.395087 105.7379145 2.02423074 -0.087207 101 34 SH2210 2210 Phe1 5' flank 33.149953 183.589867 108.36991 2.034908713 -0.023711 101 35 SH10387 10387 RUF7 3' 35.218486 183.953948 109.586217 2.039755935 0.045456 101 36 SH18963 18963 YOL127W_15_80347_81189_INTRON_14_427 intron 28.932179 185.471207 28.932179 157.539028 93.2356035 1.969581786 -0.102405 101 37 SH12550 12550 MT_15S 5' 26.84336 162.035992 26.84336 136.192632 81.517996 1.911253495 -0.143599 101 38 SH19131 19131 YPL075W_16_412249_415357_INTRON_9_759 intron 28.945999 169.577712 28.945999 141.631713 85.288856 1.930892289 -0.017002 101 39 SH19748 19748 Negative Control 31.07797 153.751766 92.414868 1.965741848 0.065784 101 40 SH15147 15147 MT tRNA Thr1 reverse complement tRNA 26.956671 148.576225 26.956671 122.619554 74.7881125 1.873832573 -0.04793 101 41 SH18576 18576 YNL044W_14_545264_545873_INTRON_25_103 exon/intron 31.247251 198.401789 31.247251 168.154538 99.7008945 1.998699055 -0.005828 101 42 SH12374 12374 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.47827 220.315231 33.47827 187.836961 110.6576155 2.043981308 -0.050498 101 43 SH12231 12231 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.430121 203.513334 30.430121 174.083213 102.256667 2.009691633 -0.090569 101 44 SH924 924 Glu3 3' flank 29.47842 155.971482 92.724951 1.967196613 -0.055488 101 45 SH12407 12407 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.968192 211.034894 35.968192 176.066702 106.017447 2.025377342 0.144638 101 46 SH3701 3701 Val3 5' flank - tRNA3 3 33.881711 144.230279 89.055995 1.94966316 0.296828 101 47 SH15925 15925 YDL108W_4_267697_268698_INTRON_29_109 exon/intron 29.600781 192.696884 29.600781 164.096103 96.848442 1.986092639 -0.088027 101 48 SH20200 20200 YDR025W spliced 29.544055 160.060573 94.802314 1.976818938 -0.071837 101 49 SH13830 13830 MT COB Cytbi2 27.31587 142.391078 27.31587 116.075208 71.695539 1.855492134 0.024993 101 50 SH3481 3481 Tyr1 5' flank 31.412405 171.153271 101.282838 2.005535862 -0.013933 101 51 SH20672 20672 YIL069C spliced 35.443761 176.377022 105.9103915 2.024938573 0.124071 101 52 SH4717 4717 snR4 snR4 121 135 139.803629 324.076896 231.9402625 2.365376144 0.060623 101 53 SH21137 21137 YNL147W spliced 41.259546 236.797192 139.028369 2.143103428 -0.406907 101 54 SH555 555 Cys1 3' flank 29.639937 118.865551 74.252744 1.870712508 0.172997 101 55 SH8168 8168 snoRNA cluster 3; snR70 38.729496 187.641342 38.729496 149.911846 94.320671 1.974606882 0.504614 101 56 SH8599 8599 snR19 / U1 RNA U1 491 508 30.342441 198.972747 114.657594 2.059402824 -0.2655 101 57 SH2937 2937 Ser1 5' flank 29.172584 184.814044 106.993314 2.02935664 -0.230237 101 58 SH6951 6951 snR58 3' 28.015837 140.916889 84.466363 1.926683794 -0.081848 101 59 SH10667 10667 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 221 239 31.90085 171.544097 101.7224735 2.007416912 0.012594 101 60 SH5735 5735 snR34 3' 27.733441 145.5713 86.6523705 1.937780448 -0.128509 101 61 SH8016 8016 snoRNA cluster 2 intergenic/snR55 29.584746 156.825379 29.584746 128.240633 78.9126895 1.897146845 0.106369 101 62 SH20987 20987 YML067C spliced 31.421624 200.965041 116.1933325 2.065181208 -0.240446 101 63 SH3186 3186 Ser5 tRNA 51 63 33.24875 184.708295 108.9785225 2.037340916 -0.030395 101 64 SH11247 11247 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3121 3138 36921.21962 26936.83322 31929.02642 4.504185676 -0.00675 101 65 SH1536 1536 Leu3 3' flank 34.926489 171.605521 103.266005 2.013957376 0.152739 101 66 SH18700 18700 YNL130C_14_381156_379555_INTRON_30_470 intron 32.837834 202.957123 32.837834 171.119289 101.9785615 2.008508882 0.069229 101 67 SH2052 2052 Lys4 5' flank 30.766038 144.223003 87.4945205 1.941980855 0.096677 101 68 SH11396 11396 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3866 3883 26159.33831 20866.61928 23512.9788 4.371307652 -0.048208 101 69 SH16776 16776 YGL103W_7_310965_311925_INTRON_50_560 intron 30.49577 171.222779 30.49577 141.727009 86.1113895 1.935060597 0.092319 101 70 SH3043 3043 Ser3 5' flank 36.087207 165.86496 100.9760835 2.004218522 0.249318 101 71 SH18669 18669 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.251694 175.246456 28.251694 147.994762 88.123228 1.945090397 -0.102382 101 72 SH18199 18199 YML024W_13_225889_226697_INTRON_4_401 intron 28.069785 155.170378 28.069785 128.100593 78.085189 1.892568666 -0.000953 101 73 SH17021 17021 YGR148C_7_788173_787307_INTRON_1_392 intron 27.881096 154.155372 27.881096 127.274276 77.577686 1.889736821 -0.009461 101 74 SH11703 11703 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5401 5414 37.03594 159.470414 98.253177 1.992346602 0.346748 101 75 SH13586 13586 MT COX1 3' 29.370751 189.694924 29.370751 161.324173 95.347462 1.979309137 -0.090416 101 76 SH7163 7163 snR63 3' 31.042254 202.136054 116.589154 2.066658151 -0.264801 101 77 SH17777 17777 YKL180W_11_109271_110131_INTRON_310_615 intron 30.879161 210.124746 30.879161 180.245585 105.562373 2.023509144 -0.098528 101 78 SH7520 7520 snR79 5' 27.085358 130.260802 78.67308 1.895826153 -0.088235 101 79 SH8184 8184 snoRNA cluster 3; snR70 47.018826 229.353081 47.018826 183.334255 115.1765405 2.06136403 0.252213 101 80 SH8188 8188 snoRNA cluster 3; snR70/intergenic 32.308807 178.717942 32.308807 147.409135 89.858971 1.953561441 0.180517 101 81 SH10477 10477 RUF8 RUF8 311 330 24.978952 108.799561 66.8892565 1.825356369 -0.103983 101 82 SH2122 2122 Met1 5' flank - tRNA12 12 28.495224 166.647963 97.5715935 1.989323398 -0.179522 101 83 SH18809 18809 YNL302C_14_62942_61957_INTRON_21_571 5' exon 30.208692 210.316407 30.208692 181.107715 105.6582035 2.023903222 -0.144413 101 84 SH20715 20715 YJL041W spliced 31.929465 178.914253 105.421859 2.02293067 -0.028469 101 85 SH8550 8550 snR19 / U1 RNA U1 246 258 48.013865 193.78758 120.9007225 2.082428896 0.140411 101 86 SH20812 20812 YKL186C spliced 31.856539 184.259278 108.0579085 2.033656557 -0.077529 101 87 SH1144 1144 His1 5' flank 26.50941 132.984689 79.7470495 1.901714624 -0.149591 101 88 SH12142 12142 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7596 7614 31.923531 177.086535 104.505033 2.019137207 -0.018384 101 89 SH21720 21720 copy of SH11710 8557.07422 6387.654791 7472.364506 3.873458049 0.387999 101 90 SH17875 17875 YLR048W_12_242233_243350_INTRON_91_449 5' exon 29.446642 176.234465 29.446642 147.787823 88.6172325 1.947518183 -0.014066 101 91 SH16302 16302 YDR450W_4_1359912_1360787_INTRON_48_482 intron 32.324423 213.15034 32.324423 181.825917 107.07517 2.029688773 -0.03763 101 92 SH9402 9402 RUF1 3' 40.751611 179.624044 110.1878275 2.04213362 0.209372 101 93 SH21527 21527 copy of SH3562 32.747573 146.379959 89.563766 1.952132347 0.214187 101 94 SH20441 20441 YGL087C spliced 29.272262 188.148026 108.710144 2.036270071 -0.242026 101 95 SH976 976 Gly1 3' flank 33.179436 160.299701 96.7395685 1.985604146 0.154937 101 96 SH18954 18954 YOL127W_15_80347_81189_INTRON_14_427 intron 35.229102 202.198144 35.229102 167.969042 101.599072 2.006889741 0.199217 101 97 SH4200 4200 telomerase RNA telomerase 36 52 31.610479 163.646911 97.628695 1.989577484 0.043384 101 98 SH21795 21795 copy of SH14860 31.691074 146.584013 89.1375435 1.950060661 0.145001 101 99 SH11453 11453 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4151 4168 27562.83414 24581.4889 26072.16152 4.416177038 -0.240713 101 100 SH19334 19334 YPL241C_16_96258_95372_INTRON_26_105 5' exon 32.676919 195.206003 32.676919 163.529084 98.1030015 1.991682295 0.106143 101 101 SH15209 15209 MT COX3 cox3 29.82458 197.056512 29.82458 168.231932 99.028256 1.995759131 -0.093406 101 102 SH4311 4311 telomerase RNA telomerase 591 610 38.304635 210.240325 124.27248 2.094374965 -0.183745 101 103 SH12724 12724 MT COX1 5' 29.759116 193.507071 29.759116 164.747955 97.2535355 1.987905398 -0.080167 101 104 SH2999 2999 Ser2 5' flank 29.729016 146.875164 88.30209 1.945970983 0.010758 102 2 SH9010 9010 snR17a / U3a U3a 336 357 31.91767 170.033854 100.975762 2.004217139 0.022564 102 3 SH6094 6094 snR37 386 + 3' 386 29.803532 141.299568 85.55155 1.932227882 0.046315 102 4 SH1731 1731 Leu7 5' flank 36.346551 165.305577 100.826064 2.003572814 0.263597 102 5 SH16545 16545 YER133W_5_432491_433954_INTRON_178_702 intron 32.057189 200.705083 32.057189 169.647894 100.8525415 2.003686847 0.033026 102 6 SH11851 11851 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6141 6156 40.757079 208.398853 124.577966 2.095441236 -0.126396 102 7 SH9623 9623 RUF3 3' 29.934561 132.898075 81.416318 1.910711458 0.103325 102 8 SH2960 2960 Ser1 tRNA 31 48 29.917301 148.050134 88.9837175 1.949310545 0.017406 102 9 SH20802 20802 YKL180W spliced 38.500154 179.031603 108.7658785 2.036492672 0.176359 102 10 SH5689 5689 snR34 snR34 366 382 95.812768 296.342162 196.077465 2.292427683 -0.152923 102 11 SH14405 14405 MT 21S rRNA 21S rRNA3 29.639156 180.426072 29.639156 151.786916 90.713036 1.957669702 -0.022172 102 12 SH18713 18713 YNL130C_14_381156_379555_INTRON_30_470 intron 2275.701853 4921.480648 2275.701853 2646.778795 2461.240324 3.391154022 0.05974 102 13 SH20545 20545 YGR214W spliced 31.405768 190.494956 110.950362 2.045128724 -0.150763 102 14 SH14502 14502 MT 21S rRNA 21S rRNA3 37.52294 231.001457 37.52294 194.478517 116.0007285 2.064460717 -0.022072 102 15 SH5498 5498 snR32 snR32 151 168 161.497194 425.123417 293.3103055 2.467327322 -0.275741 102 16 SH16906 16906 YGL232W_7_62074_63001_INTRON_58_115 exon/intron 45.489934 252.927676 45.489934 208.437742 126.963838 2.103680042 -0.057872 102 17 SH2429 2429 Phe5 5' flank 32.86907 134.367943 83.6185065 1.922302406 0.291235 102 18 SH6161 6161 snR39B 3' 30.738715 171.614353 101.176534 2.005079798 -0.057194 102 19 SH11181 11181 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2791 2806 28.648989 167.217367 97.933178 1.990929848 -0.171117 102 20 SH10769 10769 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 731 744 32.786752 173.69816 103.242456 2.013858327 0.051122 102 21 SH11165 11165 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2711 2732 28.659428 122.035161 75.3472945 1.877067663 0.082002 102 22 SH18353 18353 YML124C_13_23684_22049_INTRON_26_323 3' exon 32.8123 188.033686 32.8123 156.221386 94.516843 1.975509207 0.16032 102 23 SH20285 20285 YDR471W spliced 32.825883 155.154997 93.99044 1.973083683 0.168053 102 24 SH5307 5307 snR30 snR30 386 404 30.766587 178.134986 104.4507865 2.018911715 -0.093389 102 25 SH3733 3733 Val3 3' flank 28.708435 146.997228 87.8528315 1.943755763 -0.063335 102 26 SH14990 14990 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.724263 202.677962 28.724263 174.953699 101.838981 2.007914045 -0.203483 102 27 SH8688 8688 LSR1 / U2 RNA U2 81 102 30.817352 139.106391 84.9618715 1.92922407 0.128956 102 28 SH10456 10456 RUF8 RUF8 206 223 30.837518 180.692473 105.7649955 2.024341955 -0.103567 102 29 SH8209 8209 snoRNA cluster 3; snR51 30.854922 165.998778 30.854922 136.143856 83.499389 1.921683298 0.148298 102 30 SH16981 16981 YGR034W_7_555923_556666_INTRON_20_496 intron/exon 30.866822 171.03552 30.866822 141.168698 86.01776 1.934588129 0.120805 102 31 SH17722 17722 YKL156W_11_158616_159214_INTRON_4_353 5' exon 35.033238 217.663921 35.033238 183.630683 109.3319605 2.038747136 0.042106 102 32 SH58 58 Ala2 5' flank 28.792744 147.332403 88.0625735 1.944791373 -0.058934 102 33 SH3919 3919 RNase MRP RNaseMRP 11 28 35.026977 202.474155 118.750566 2.074635688 -0.15852 102 34 SH21516 21516 copy of SH3111 28.7842 177.244558 103.014379 2.012897849 -0.212803 102 35 SH5166 5166 snR13 5' - 3 -14 3 78.924265 205.557575 142.24092 2.153024553 0.387614 102 36 SH18026 18026 YLR306W_12_744151_744851_INTRON_4_137 intron/exon 32.948783 256.050103 32.948783 224.10132 128.5250515 2.108987787 -0.42282 102 37 SH12499 12499 MT_tRNA Pro tRNA 43.395925 275.317819 43.395925 232.921894 138.1589095 2.140378897 -0.337139 102 38 SH9436 9436 RUF2 RUF2 21 40 30.932738 167.300962 99.11685 1.996147491 -0.019569 102 39 SH1510 1510 Leu3 tRNA 21 35 30.997223 167.185715 99.091469 1.996036267 -0.014976 102 40 SH15522 15522 YBR048W_2_332790_333771_INTRON_46_556 intron 37.372562 225.24041 37.372562 188.867848 113.120205 2.053540183 0.038843 102 41 SH6874 6874 snR56 snR56 1 23 56.490732 223.887346 140.189039 2.146714059 -0.062031 102 42 SH18718 18718 YNL130C_14_381156_379555_INTRON_30_470 intron 29.210248 194.519115 29.210248 166.308867 97.7595575 1.990159227 -0.12644 102 43 SH11333 11333 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3551 3569 37.800471 180.231374 109.0159225 2.037489934 0.148837 102 44 SH20559 20559 YHR001W-A spliced 38.993269 208.777471 123.88537 2.093020022 -0.157095 102 45 SH7340 7340 snR68 5' 29.492941 175.394254 102.4435975 2.010484821 -0.15667 102 46 SH15683 15683 YBR191W_2_606228_607098_INTRON_12_399 intron 31.650144 211.364755 31.650144 180.714611 106.1823775 2.026052445 -0.055067 102 47 SH6983 6983 snR60 5' - 16 -4 16 108.642239 272.842882 190.7425605 2.280447608 0.12736 102 48 SH16876 16876 YGL187C_7_150529_149708_INTRON_1_342 intron/exon 33.671078 230.969911 33.671078 198.298833 115.9849555 2.06440166 -0.14107 102 49 SH2252 2252 Phe1 3' flank 29.304323 154.760324 92.0323235 1.963940387 -0.061466 102 50 SH17593 17593 YJL191W_10_73786_74610_INTRON_11_418 intron 29.15557 154.884608 29.15557 126.729038 77.942304 1.89177324 0.086022 102 51 SH3570 3570 Tyr2 3' flank 33.176511 169.016897 101.096704 2.004736997 0.100971 102 52 SH19597 19597 AEP2/ATP13 2.1 35.065481 189.382796 112.2241385 2.05008628 -0.012168 102 53 SH10050 10050 RUF6 RUF6 96 112 51.477836 225.492036 138.484936 2.141402535 -0.147733 102 54 SH17844 17844 YKR094C_11_618384_617630_INTRON_9_376 intron 30.564262 184.709242 30.564262 155.14498 92.854621 1.967803522 0.023886 102 55 SH19028 19028 YOR182C_15_678792_678190_INTRON_4_414 intron 30.417061 174.709654 30.417061 145.292593 87.854827 1.943765628 0.067017 102 56 SH17366 17366 YIL052C_9_257061_256224_INTRON_38_509 intron 30.281158 235.176788 30.281158 205.89563 118.088394 2.072207216 -0.325636 102 57 SH19565 19565 AEP2/ATP13 0.6 38.284216 188.969916 113.627066 2.055481793 0.054717 102 58 SH4378 4378 telomerase RNA telomerase 926 940 42.177086 189.396541 115.7868135 2.063659102 0.112652 102 59 SH3036 3036 Ser2 3' flank 35.936926 210.930669 123.4337975 2.09143409 -0.229529 102 60 SH3904 3904 RNase MRP 5' 31.760617 185.137957 108.449287 2.035226701 -0.08917 102 61 SH13238 13238 MT COX1 COX1-ai4 27.623158 169.716655 27.623158 143.093497 85.3583275 1.931245897 -0.123521 102 62 SH4276 4276 telomerase RNA telomerase 416 431 49.395735 171.645641 110.520688 2.04344358 0.432359 102 63 SH20052 20052 YBR220C spliced 29.347929 175.366281 102.357105 2.010117994 -0.165722 102 64 SH7142 7142 snR63 snR63 216 231 46.989604 215.028003 131.0088035 2.11730048 -0.106752 102 65 SH19402 19402 YPR063C_16_678315_677807_INTRON_42_127 intron 54.695392 238.896733 54.695392 185.201341 119.9483665 2.078994338 0.325846 102 66 SH13536 13536 MT COX1 intronic 29.00312 182.381619 29.00312 154.378499 91.6908095 1.962325807 -0.080906 102 67 SH19081 19081 YOR293W_15_867094_867848_INTRON_53_489 intron 35.716927 225.381293 35.716927 190.664366 113.1906465 2.05381054 -0.013833 102 68 SH2625 2625 Pro3 tRNA 76 88 59.934747 225.029029 142.481888 2.153759661 -0.02672 102 69 SH2344 2344 Phe3 tRNA-intron/exon 46 61 46.069918 201.295846 123.682882 2.092309596 0.028621 102 70 SH6470 6470 snR45 3' 32.346907 161.727805 97.037356 1.986938955 0.098421 102 71 SH10286 10286 RUF7 RUF7 41 58 32.153744 187.026221 109.5899825 2.039770858 -0.091556 102 72 SH19632 19632 RNA14 2.2 28.146043 186.155066 107.1505545 2.029994423 -0.304549 102 73 SH4147 4147 SRP RNA SRP RNA 626 638 784.911039 876.457781 830.68441 2.91943606 0.427297 102 74 SH21362 21362 Ile2_3 spliced 29.615696 171.380765 100.4982305 2.002158415 -0.125386 102 75 SH9399 9399 RUF1 3' 33.12496 162.703305 97.9141325 1.990845381 0.136744 102 76 SH18496 18496 YMR194W_13_651144_651909_INTRON_17_479 intron 53.280674 236.960094 53.280674 184.67942 118.980047 2.075474136 0.314868 102 77 SH14246 14246 MT tRNA Ser tRNA 32.71159 191.785822 32.71159 160.074232 96.392911 1.984045096 0.12982 102 78 SH21555 21555 copy of SH4781 60.941838 228.148899 144.5453685 2.160004181 -0.041636 102 79 SH215 215 Arg3 5' flank 30.562205 141.301716 85.9319605 1.93415472 0.099244 102 80 SH2556 2556 Pro2 tRNA 16 32 143.323521 224.921325 184.122423 2.265106681 0.767788 102 81 SH17277 17277 YHR141C_8_382752_381991_INTRON_5_445 intron 39.31577 249.118471 39.31577 210.802701 125.0592355 2.097115769 -0.174213 102 82 SH13283 13283 MT COX1 Exon 5a 28.390916 193.768336 28.390916 166.37742 97.384168 1.988488358 -0.185817 102 83 SH7365 7365 snR68 snR68 46 62 28.292202 155.03969 91.665946 1.962208025 -0.135871 102 84 SH5993 5993 snR36 3' 29.991359 178.800038 104.3956985 2.018682604 -0.144881 102 85 SH6038 6038 snR37 snR37 106 120 44.184743 201.285757 122.73525 2.088969312 0.002183 102 86 SH16464 16464 YER093C-A_5_348396_347908_INTRON_125_199 intron 28.120027 206.642586 28.120027 179.522559 103.821293 2.016286433 -0.269418 102 87 SH17377 17377 YIL052C_9_257061_256224_INTRON_38_509 intron 29.900631 180.734146 29.900631 151.833515 90.867073 1.958406539 -0.004193 102 88 SH20415 20415 YGL030W spliced 60.317758 241.357625 150.8376915 2.178509877 -0.166533 102 89 SH21262 21262 YPL079W spliced 35.39234 202.535215 118.9637775 2.075414746 -0.151836 102 90 SH21766 21766 copy of SH13601 28.371432 137.44207 82.906751 1.918589896 -0.035827 102 91 SH11041 11041 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2091 2106 17704.47655 9076.221172 13390.34886 4.126791892 0.769764 102 92 SH5317 5317 snR30 snR30 436 448 45.08191 183.565557 114.3237335 2.058136399 0.224086 102 93 SH1113 1113 Gly4 tRNA 41 53 2316.182464 1732.449002 2024.315733 3.30627825 0.74586 102 94 SH5430 5430 snR31 216-225+3' 216 30.990495 146.390612 88.6905535 1.947877365 0.099678 102 95 SH11693 11693 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5351 5369 66.604644 221.30709 143.955867 2.158229369 0.093839 102 96 SH15763 15763 YCR031C_3_178212_177492_INTRON_8_314 intron/exon 31.404542 178.994728 31.404542 148.590186 89.997364 1.954229789 0.11514 102 97 SH5290 5290 snR30 snR30 301 317 31.557563 167.356887 99.457225 1.997636338 0.017476 102 98 SH15785 15785 YDL029W_4_399336_400634_INTRON_23_145 intron 31.663813 187.780624 31.663813 157.116811 94.390312 1.974927422 0.087003 102 99 SH13607 13607 MT ATP8/AAP1 ATP8 / 3' 29.837818 185.914988 29.837818 157.07717 93.457494 1.970614132 -0.036061 102 100 SH8673 8673 LSR1 / U2 RNA U2 6 22 29.856813 126.83664 78.3467265 1.894020855 0.134228 102 101 SH12760 12760 MT COX1 COX1ai1 54.510956 290.614507 54.510956 237.103551 145.8072535 2.163779129 -0.211069 102 102 SH15125 15125 MT tRNA Phe 5' 29.824901 192.804797 29.824901 163.979896 96.9023985 1.986334527 -0.071799 102 103 SH16423 16423 YER074W_5_306319_307192_INTRON_4_469 5' exon 37.375997 245.69935 37.375997 209.323353 123.349675 2.09113801 -0.188485 102 104 SH15179 15179 MT COX3 cox3 192.0288 600.137208 192.0288 409.108408 300.568604 2.477943614 -0.014638 103 2 SH4494 4494 U3b (snR17b) U3b 26 45 31.855063 166.788335 99.321699 1.99704414 0.038474 103 3 SH9519 9519 RUF3 5' 31.895871 173.984808 102.9403395 2.012585596 -0.002051 103 4 SH14812 14812 "MT tRNAs (Lys, Arg1, Gly)" tRNA Arg1 31.93645 192.358693 31.93645 161.422243 96.6793465 1.985333706 0.076469 103 5 SH9980 9980 RUF5-1 RUF5-1 706 725 31.972181 191.625287 111.798734 2.048436886 -0.139333 103 6 SH18949 18949 YOL127W_15_80347_81189_INTRON_14_427 intron 34.155339 231.070021 34.155339 197.914682 116.0350105 2.064589046 -0.126745 103 7 SH1987 1987 Lys2 3' flank 29.843611 141.436764 85.6401875 1.932677609 0.048389 103 8 SH16289 16289 YDR450W_4_1359912_1360787_INTRON_48_482 intron 29.820188 184.318768 29.820188 155.49858 92.659384 1.966889409 -0.029106 103 9 SH1394 1394 Leu1 tRNA-intron 41 57 34.061027 199.534211 116.797619 2.067433989 -0.14645 103 10 SH17977 17977 YLR211C_12_564531_563792_INTRON_19_77 intron 33.946364 223.009574 33.946364 190.06321 112.004787 2.049236584 -0.053746 103 11 SH10665 10665 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 211 229 35.921304 175.115667 105.5184855 2.023328549 0.152215 103 12 SH2700 2700 Pro4 3' flank 33.590546 165.638133 99.6143395 1.99832186 0.144672 103 13 SH7823 7823 snoRNA cluster1 intergenic 27.057194 168.331709 27.057194 142.274515 84.6658545 1.927708296 -0.162647 103 14 SH14079 14079 MT COB Cytbi4 28.973554 162.336958 28.973554 134.363404 81.668479 1.912054467 0.026057 103 15 SH499 499 Asp2 tRNA 56 68 35.049786 177.545492 106.297639 2.026523618 0.099539 103 16 SH12158 12158 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7676 7693 222.560048 449.582714 336.071381 2.526431531 -0.011347 103 17 SH21654 21654 copy of SH8989 270.903717 555.512496 413.2081065 2.616168833 -0.139355 103 18 SH20264 20264 YDR424C spliced 42.962082 205.098858 124.03047 2.093528389 -0.057873 103 19 SH16058 16058 YDL219W_4_65243_65766_INTRON_66_136 exon/intron 28.494911 168.749287 28.494911 141.254376 84.8746435 1.928777963 -0.048002 103 20 SH5011 5011 snR10 snR10 86 100 59.452257 193.726905 126.589581 2.102397962 0.284443 103 21 SH2674 2674 Pro4 tRNA-exon/intron 36 52 30.544111 163.364258 96.9541845 1.986566558 -0.019301 103 22 SH8515 8515 snR19 / U1 RNA U1 71 93 26.434074 104.760129 65.5971015 1.81688465 0.043588 103 23 SH4780 4780 snR5 snR5 71 85 78.115325 267.504404 172.8098645 2.23756853 -0.14864 103 24 SH18256 18256 YML056C_13_164176_162194_INTRON_461_868 5' exon 42.908682 256.650556 42.908682 214.741874 128.825278 2.110001088 -0.162034 103 25 SH10472 10472 RUF8 RUF8 286 302 30.546518 177.705569 104.1260435 2.017559367 -0.104356 103 26 SH20981 20981 YML056C spliced 46.021938 198.678057 122.3499975 2.087603965 0.05741 103 27 SH11973 11973 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6751 6768 12752.46093 9425.705214 11089.08307 4.044895637 0.285022 103 28 SH4669 4669 snR3 3' 30.584922 148.938474 89.761698 1.953091059 0.058362 103 29 SH12332 12332 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.602969 203.329172 30.602969 173.726203 102.164586 2.009300379 -0.077895 103 30 SH14962 14962 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 28.557296 177.742606 28.557296 150.18531 89.371303 1.95119809 -0.091173 103 31 SH18075 18075 YLR344W_12_819312_820142_INTRON_20_466 intron 32.695502 210.453704 32.695502 178.758202 105.726852 2.024185301 0.004757 103 32 SH21498 21498 copy of SH2291 585.789904 931.913189 758.8515465 2.880156824 -0.041393 103 33 SH1668 1668 Leu6 5' flank 28.587976 137.17171 82.879843 1.91844892 -0.018279 103 34 SH130 130 Arg1 26-40 26 40 38.93685 157.005607 97.9712285 1.991098554 0.432992 103 35 SH4415 4415 telomerase RNA telomerase 1111 1127 32.753224 151.447032 92.100128 1.964260234 0.186977 103 36 SH2409 2409 Phe4 3' flank 28.649825 131.545466 80.0976455 1.90361975 0.01912 103 37 SH11482 11482 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4296 4309 951.455494 912.614909 932.0352015 2.969432315 0.606171 103 38 SH122 122 Arg1 5' flank - tRNA5 5' flank 5 30.83041 137.362245 84.0963275 1.924777031 0.139682 103 39 SH17136 17136 YHR010W_8_126513_127484_INTRON_32_592 intron 37.168217 218.095685 37.168217 181.927468 109.5478425 2.039603829 0.116503 103 40 SH9856 9856 RUF5-1 RUF5-1 86 103 60.378466 168.165862 114.272164 2.057940452 0.605888 103 41 SH8010 8010 snoRNA cluster 2 intergenic 29.042923 175.675727 29.042923 147.632804 88.3378635 1.946146891 -0.042301 103 42 SH14431 14431 MT 21S rRNA 21S rRNA3 498.474536 1293.821337 498.474536 796.346801 647.4106685 2.811179852 0.012417 103 43 SH831 831 Glu2 5' flank 29.265738 160.179272 94.722505 1.976453175 -0.09208 103 44 SH20813 20813 YKL186C spliced 29.351314 161.052726 95.20202 1.978646163 -0.090426 103 45 SH7826 7826 snoRNA cluster1 intergenic 29.401522 188.874308 29.401522 160.472786 94.937154 1.977436208 -0.083957 103 46 SH18688 18688 YNL112W_14_413636_416278_INTRON_1274_2275 intron 31.529402 208.259294 31.529402 177.729892 104.629647 2.01965476 -0.045292 103 47 SH18162 18162 YLR448W_12_1028848_1029762_INTRON_16_399 5' exon 33.603066 224.78616 33.603066 192.183094 112.89308 2.052667322 -0.08464 103 48 SH8847 8847 LSR1 / U2 RNA U2 876 892 142.371228 352.023262 247.197245 2.393043626 -0.071931 103 49 SH9419 9419 RUF2 5' 29.143036 151.633729 90.3883825 1.956112615 -0.056386 103 50 SH208 208 Arg2 3' flank 31.083659 143.017123 87.050391 1.939770726 0.124794 103 51 SH6146 6146 snR39B snR39B 71 88 32.992877 148.160625 90.576751 1.957016738 0.219879 103 52 SH14150 14150 MT COB intronic 30.740609 195.641334 30.740609 165.900725 98.320667 1.992644816 -0.022677 103 53 SH632 632 Gln2 5' flank 28.525042 114.589519 71.5572805 1.854653827 0.124558 103 54 SH8985 8985 snR17a / U3a U3a 211 227 46.887103 207.727179 127.307141 2.104852765 -0.030965 103 55 SH18254 18254 YML034W_13_209525_212155_INTRON_1921_2046 3' exon 67.24978 303.222764 67.24978 236.972984 152.111382 2.182161712 -0.037984 103 56 SH678 678 Gln3 5' flank 30.212213 193.966243 112.089228 2.049563878 -0.22765 103 57 SH18146 18146 YLR406C_12_931752_931062_INTRON_58_406 intron 34.165852 224.37007 34.165852 191.204218 112.685035 2.051866244 -0.056126 103 58 SH17223 17223 YHR041C_8_189855_189122_INTRON_15_115 intron/exon 30.002946 197.135352 30.002946 168.132406 99.067676 1.995931975 -0.081659 103 59 SH651 651 Gln2 tRNA 41 53 46.039579 216.482721 131.26115 2.118136205 -0.135445 103 60 SH8369 8369 snoRNA cluster 5 5' 62.005902 229.685966 62.005902 168.680064 115.342983 2.061991179 0.617464 103 61 SH14193 14193 MT COB Exon6 27.66014 176.193217 27.66014 149.533077 88.5966085 1.947417097 -0.155008 103 62 SH5982 5982 snR36 3' 27.545824 142.95176 85.248792 1.930688234 -0.128653 103 63 SH14225 14225 MT ATP9 ATP9 31.39714 198.089058 31.39714 167.691918 99.544529 1.998017396 0.005917 103 64 SH2922 2922 Pro8 3' flank 29.301808 130.733577 80.0176925 1.903186023 0.071127 103 65 SH16258 16258 YDR424C_4_1319830_1319376_INTRON_26_121 5' exon 42.992878 234.098271 42.992878 192.105393 117.5491355 2.07021944 0.091695 103 66 SH13358 13358 MT COX1 intronic 29.095509 185.229739 29.095509 157.13423 93.1148695 1.969019039 -0.088638 103 67 SH4811 4811 snR5 3' 30.947203 168.456158 99.7016805 1.998702479 -0.025686 103 68 SH1321 1321 Ile3 5' flank - tRNA2 2 28.881991 168.979514 98.9307525 1.995331312 -0.162799 103 69 SH5648 5648 snR34 snR34 161 180 28.75302 151.459396 90.106208 1.954754713 -0.083415 103 70 SH19396 19396 YPR063C_16_678315_677807_INTRON_42_127 5' exon 30.528469 211.520131 30.528469 181.991662 106.2600655 2.026370079 -0.129675 103 71 SH4773 4773 snR5 snR5 36 52 133.826373 305.129755 219.478064 2.341391121 0.126979 103 72 SH5935 5935 snR36 snR36 131 143 33.94 149.343134 91.641567 1.962092507 0.269236 103 73 SH263 263 Arg4 5' flank 28.021066 158.742031 93.3815485 1.970261071 -0.174973 103 74 SH4831 4831 snR8 5' 27.80854 136.255143 82.0318415 1.913982461 -0.071273 103 75 SH18766 18766 YNL246W_14_185459_186348_INTRON_33_127 exon/intron 33.184574 229.985126 33.184574 197.800552 115.492563 2.062554019 -0.148269 103 76 SH19612 19612 RNA14 1.1 49.63448 213.732592 131.683536 2.11953148 -0.055824 103 77 SH15303 15303 YAL001C_1_151163_147591_INTRON_71_160 exon/intron 132.796972 394.877961 132.796972 263.080989 197.9389805 2.296531329 0.395873 103 78 SH2644 2644 Pro3 3' flank 30.716496 182.10722 106.411858 2.026990026 -0.118842 103 79 SH20584 20584 YHR016C spliced 30.549197 175.837508 103.1933525 2.013651722 -0.093455 103 80 SH4081 4081 SRP RNA SRP RNA 296 312 66.681045 214.808306 140.7446755 2.148431974 0.156472 103 81 SH10225 10225 RUF6 RUF6 971 987 28.450435 142.356934 85.4036845 1.931476607 -0.057351 103 82 SH20920 20920 YLR344W spliced 30.109809 140.876433 85.493121 1.931931172 0.070185 103 83 SH10316 10316 RUF7 RUF7 191 208 31.767042 130.746227 81.2566345 1.909858831 0.241181 103 84 SH16130 16130 YDR064W_4_579453_580447_INTRON_22_560 intron 28.10364 168.079145 28.10364 140.975505 84.5395725 1.927060047 -0.075582 103 85 SH21513 21513 copy of SH2858 29.799237 139.506652 84.6529445 1.927642069 0.055963 103 86 SH9540 9540 RUF3 RUF3 86 101 28.870366 163.617756 96.244061 1.98337394 -0.137514 103 87 SH11063 11063 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2201 2219 9251.90271 3829.066231 6540.484471 3.815609919 1.303273 103 88 SH9380 9380 RUF1 RUF1 476 492 445.618868 740.357216 592.988042 2.773045936 -0.008083 103 89 SH3023 3023 Ser2 76-82 + 3' flank 76 29.875171 123.278591 76.576881 1.884097673 0.159044 103 90 SH15813 15813 YDL061C_4_341182_340627_INTRON_1_408 intron 30.006542 197.472579 30.006542 168.466037 99.2362895 1.996670517 -0.083449 103 91 SH16125 16125 YDR064W_4_579453_580447_INTRON_22_560 intron 31.974554 218.463228 31.974554 187.488674 109.731614 2.040331767 -0.102418 103 92 SH16075 16075 YDR025W_4_491510_492319_INTRON_46_384 exon/intron 28.585372 174.109588 28.585372 146.524216 87.554794 1.942279931 -0.069871 103 93 SH18097 18097 YLR367W_12_855877_857316_INTRON_698_1180 intron 32.446769 165.125135 32.446769 133.678366 83.0625675 1.919405351 0.268486 103 94 SH8094 8094 snoRNA cluster 2 3' 40.057619 213.031468 40.057619 173.973849 107.015734 2.029447635 0.266828 103 95 SH3142 3142 Ser4 3' flank 31.111106 137.713067 84.4120865 1.926404635 0.156782 103 96 SH3872 3872 RNaseP RNaseP 326 341 35.050629 187.693579 111.372104 2.046776424 0.005772 103 97 SH15458 15458 YBL087C_2_60732_59815_INTRON_43_546 intron 29.628431 175.335066 29.628431 146.706635 88.167533 1.945308689 0.00464 103 98 SH19959 19959 YBL059C-A spliced 29.748645 137.980316 83.8644805 1.923578061 0.060958 103 99 SH14187 14187 MT COB Exon6 29.823967 191.446932 29.823967 162.622965 96.223466 1.983280996 -0.065133 103 100 SH7289 7289 snR66 5' 27.972234 178.041083 103.0066585 2.012865299 -0.271537 103 101 SH17432 17432 YIL133C_9_99416_98527_INTRON_32_321 intron 31.75663 208.547169 31.75663 177.790539 104.7735845 2.020251802 -0.032215 103 102 SH16096 16096 YDR059C_4_569765_569229_INTRON_48_137 5' exon 29.851873 179.490342 29.851873 150.638469 90.245171 1.955423972 -0.001178 103 103 SH959 959 Gly1 tRNA 46 58 35.519137 161.963379 98.741258 1.994498656 0.270478 103 104 SH14310 14310 MT VAR1 includes 5’ processing site VAR1 31.702152 189.327858 31.702152 158.625706 95.163929 1.978472364 0.08046 104 2 SH21836 21836 copy of SH16601 33.925799 207.588736 120.7572675 2.081913277 -0.235451 104 3 SH20792 20792 YKL156W spliced 33.955044 187.600268 110.777656 2.044452171 -0.03143 104 4 SH7085 7085 snR63 5' 31.83363 156.199032 94.016331 1.973203299 0.102849 104 5 SH4757 4757 snR5 5' 29.712067 141.942302 85.8271845 1.933624866 0.036305 104 6 SH11674 11674 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5256 5273 244.549343 403.847039 324.198191 2.510810587 0.283195 104 7 SH10977 10977 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1771 1790 72.922282 241.727938 157.32511 2.196798044 -0.008835 104 8 SH16808 16808 YGL137W_7_249872_252741_INTRON_19_218 intron/exon 29.696748 180.278289 29.696748 151.581541 90.6391445 1.957315798 -0.017046 104 9 SH20008 20008 YBR082C spliced 33.911969 171.687335 102.799652 2.011991644 0.116623 104 10 SH5701 5701 snR34 snR34 426 444 29.524407 186.444803 107.984605 2.033361844 -0.216753 104 11 SH6703 6703 snR49 snR49 41 57 135.546905 345.600609 240.573757 2.381248251 -0.089863 104 12 SH13054 13054 MT COX1 COX1ai2 33.426968 208.533561 33.426968 176.106593 104.7667805 2.020223598 0.056481 104 13 SH14337 14337 MT VAR1 includes 5’ processing site VAR1 33.211821 194.247664 33.211821 162.035843 97.623832 1.989555851 0.145816 104 14 SH5088 5088 snR11 snR11 41 58 30.916994 142.718797 86.8178955 1.938609254 0.115329 104 15 SH17975 17975 YLR211C_12_564531_563792_INTRON_19_77 5' exon 84.929194 330.516504 84.929194 246.58731 165.758252 2.219475158 0.088338 104 16 SH17854 17854 YKR095W-A_11_625432_625839_INTRON_39_113 intron 42.997792 232.092059 42.997792 190.094267 116.5460295 2.066497483 0.115814 104 17 SH545 545 Cys1 tRNA 26 42 30.507481 183.312539 106.91001 2.02901837 -0.138308 104 18 SH18846 18846 YNL312W_14_48286_49215_INTRON_8_115 intron 32.501917 165.099702 32.501917 133.597785 83.049851 1.919338858 0.272533 104 19 SH4672 4672 snR3 3' 32.471128 179.746107 106.1086175 2.025750656 -0.012792 104 20 SH13621 13621 MT ATP6 ATP6 32.457361 195.952678 32.457361 164.495317 98.476339 1.993331895 0.087554 104 21 SH3975 3975 RNase MRP RNaseMRP 291 305 32.44844 178.998537 105.7234885 2.024171485 -0.006596 104 22 SH746 746 Gln4 tRNA 1 18 281.887822 603.059895 442.4738585 2.645887618 -0.229373 104 23 SH18222 18222 YML026C_13_223828_222987_INTRON_48_448 exon/intron 28.329719 166.980459 28.329719 139.65074 83.9902295 1.924228768 -0.051349 104 24 SH17640 17640 YJR145C_10_702761_701720_INTRON_15_270 exon/intron 36.498455 221.393576 36.498455 185.895121 111.196788 2.046092243 0.056651 104 25 SH6490 6490 snR46 5' 30.345973 173.981746 102.1638595 2.009297291 -0.095153 104 26 SH13852 13852 MT COB Cytbi2 30.340679 192.170708 30.340679 162.830029 96.585354 1.984911276 -0.030516 104 27 SH1484 1484 Leu2 3' flank 30.344223 162.941373 96.642798 1.985169495 -0.030827 104 28 SH21752 21752 copy of SH12973 30.355351 157.867806 94.1115785 1.973643058 -0.004441 104 29 SH9715 9715 RUF4 RUF4 351 368 48.832031 209.966981 129.399506 2.111932618 -0.027962 104 30 SH7989 7989 snoRNA cluster 2 snR57/intergenic 32.436586 197.698374 32.436586 166.261788 99.349187 1.997164318 0.075505 104 31 SH20879 20879 YLR211C spliced 262.776935 403.628604 333.2027695 2.522708602 0.367251 104 32 SH3184 3184 Ser5 tRNA 41 53 46.861922 189.516682 118.189302 2.072578168 0.17512 104 33 SH10998 10998 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1876 1893 37699.47248 33988.49769 35843.98508 4.554416288 -0.348758 104 34 SH20702 20702 YJL001W spliced 32.534224 164.175769 98.3549965 1.992796427 0.093951 104 35 SH1774 1774 Leu7 3' flank 32.578162 176.383909 104.4810355 2.019037468 0.023014 104 36 SH7154 7154 snR63 3' 28.51809 147.101502 87.809796 1.943542968 -0.077898 104 37 SH16438 16438 YER074W_5_306319_307192_INTRON_4_469 intron 30.647847 193.517781 30.647847 163.869934 97.2588905 1.987929311 -0.015813 104 38 SH3273 3273 Thr2 5' flank 61.910413 271.791061 166.850737 2.222328129 -0.387141 104 39 SH17181 17181 YHR021C_8_148660_147862_INTRON_4_553 intron 37.078658 198.376493 37.078658 162.297835 99.6882465 1.998643957 0.318472 104 40 SH8989 8989 snR17a / U3a U3a 231 247 276.793454 577.538872 427.166163 2.630596844 -0.178864 104 41 SH17690 17690 YKL006W_11_431544_432358_INTRON_130_527 intron 31.084413 203.894839 31.084413 173.810426 102.4474195 2.010501024 -0.049207 104 42 SH731 731 Gln4 5' flank 41.73059 194.081334 117.905962 2.071535766 0.050426 104 43 SH21611 21611 copy of SH7092 29.201643 137.094044 83.1478435 1.91985099 0.026893 104 44 SH10085 10085 RUF6 RUF6 271 289 29.270213 170.849494 100.0598535 2.000259863 -0.144167 104 45 SH17898 17898 YLR061W_12_263195_263949_INTRON_13_401 5' exon 39.88857 240.139275 39.88857 201.250705 120.5696375 2.081237955 -0.059563 104 46 SH5964 5964 snR36 snR36 276 292 29.281305 130.435858 79.8585815 1.902321592 0.071429 104 47 SH12182 12182 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7796 7813 35.548104 176.736222 106.142163 2.025887934 0.12416 104 48 SH20183 20183 YDL191W spliced 35.418327 205.456685 120.437506 2.080761754 -0.182507 104 49 SH19 19 Ala1 5' flank - tRNA7 5' flank 7 66.790805 225.064553 145.927679 2.164137675 0.061264 104 50 SH17471 17471 YJL001W_10_434855_435618_INTRON_66_181 5' exon 32.982156 227.119132 32.982156 195.136976 114.059566 2.057131715 -0.132721 104 51 SH4553 4553 U3b (snR17b) U3b 321 335 36.950573 157.344236 97.1474045 1.987431202 0.366633 104 52 SH6498 6498 snR46 5' 36.763985 204.151404 120.4576945 2.080834547 -0.142245 104 53 SH4718 4718 snR4 snR4 126 138 38.654179 185.781153 112.217666 2.050061232 0.098586 104 54 SH1360 1360 Ile3 3' flank 30.326272 144.823222 87.574747 1.942378891 0.063435 104 55 SH17878 17878 YLR048W_12_242233_243350_INTRON_91_449 intron 32.264669 207.04672 32.264669 175.782051 104.02336 2.017130878 0.008998 104 56 SH998 998 Gly2 5' flank 30.142462 151.670869 90.9066655 1.958595728 0.013393 104 57 SH21870 21870 copy of SH18600 31.075051 146.896324 88.9856875 1.94932016 0.102539 104 58 SH11908 11908 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6426 6444 44768.58619 36196.38055 40482.48337 4.607267146 -0.225442 104 59 SH15212 15212 MT COX3 cox3 31.910211 204.539407 31.910211 173.629196 102.7697035 2.011865104 0.000868 104 60 SH15969 15969 YDL130W_4_229906_230527_INTRON_115_415 3' exon 32.815314 229.959568 32.815314 198.144254 115.479784 2.062505963 -0.164603 104 61 SH7051 7051 snR62 snR62 46 67 31.704252 190.46984 111.087046 2.045663418 -0.139209 104 62 SH7254 7254 snR65 snR65 46 65 29.599303 190.180217 109.88976 2.040957225 -0.232171 104 63 SH9892 9892 RUF5-1 RUF5-1 266 284 29.496122 140.309822 84.902972 1.928922893 0.029957 104 64 SH20162 20162 YDL130W spliced 51.247487 203.330531 127.289009 2.104790905 0.075822 104 65 SH10753 10753 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 651 668 84.923502 257.32101 171.122256 2.233306497 0.004808 104 66 SH19367 19367 YPR028W_16_623522_624197_INTRON_52_184 intron 35.113392 206.416552 35.113392 172.30316 103.708276 2.015813415 0.152286 104 67 SH14579 14579 MT 21S rRNA intronic 29.105582 209.613679 29.105582 181.508097 105.3068395 2.022456579 -0.216197 104 68 SH10793 10793 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 851 871 27.040223 114.137901 70.589062 1.848737411 0.018255 104 69 SH7008 7008 snR60 3' 28.858753 158.874091 93.866422 1.972510264 -0.114515 104 70 SH10144 10144 RUF6 RUF6 566 582 57.813462 211.168178 134.49082 2.128692642 0.079911 104 71 SH13999 13999 MT COB intronic 28.516596 174.18868 28.516596 146.672084 87.59434 1.942476045 -0.075731 104 72 SH19322 19322 YPL218W_16_138697_139408_INTRON_29_167 5' exon 30.220101 201.756432 30.220101 172.536331 101.378216 2.005944644 -0.094447 104 73 SH3012 3012 Ser2 tRNA 21 38 85.252507 266.727127 175.989817 2.24548754 -0.061939 104 74 SH2009 2009 Lys3 5' flank - tRNA7 7 33.514 192.784828 113.149414 2.053652309 -0.093094 104 75 SH9885 9885 RUF5-1 RUF5-1 231 243 35.123843 178.050417 106.58713 2.027704768 0.097275 104 76 SH5145 5145 snR11 3' 31.161336 156.497261 93.8292985 1.972338469 0.057006 104 77 SH14053 14053 MT COB Cytbi4 34.631156 211.523775 34.631156 177.892619 106.2618875 2.026377526 0.081849 104 78 SH20001 20001 YBR078W spliced 34.41369 162.407263 98.4104765 1.993041335 0.209943 104 79 SH1218 1218 Ile1 tRNA 51 63 30.57502 168.653935 99.6144775 1.998322461 -0.049497 104 80 SH13029 13029 MT COX1 COX1ai2 30.40365 187.109826 30.40365 157.706176 94.054913 1.973381486 -0.000312 104 81 SH8091 8091 snoRNA cluster 2 3' 32.0365 217.612196 32.0365 186.575696 109.306098 2.038644391 -0.091863 104 82 SH17771 17771 YKL180W_11_109271_110131_INTRON_310_615 intron 49.800351 267.42468 49.800351 218.624329 134.21234 2.127792448 -0.103266 104 83 SH1765 1765 Leu7 3' flank 29.936043 185.493248 107.7146455 2.032274756 -0.185671 104 84 SH6022 6022 snR37 snR37 26 50 26.26956 127.983958 77.126759 1.887205082 -0.136518 104 85 SH14658 14658 MT 21S rRNA 21S rRNA4 70.529429 279.310295 70.529429 209.780866 140.1551475 2.146609053 0.251244 104 86 SH3257 3257 Thr1 3' flank 34.945542 150.733561 92.8395515 1.967733034 0.3144 104 87 SH9067 9067 snR14 / U4 RNA 5' 31.400986 159.953719 95.6773525 1.980809149 0.054146 104 88 SH21175 21175 YNR053C spliced 31.435755 161.326045 96.3809 1.983990977 0.047535 104 89 SH17093 17093 YHL001W_8_104270_105084_INTRON_130_527 intron 29.754218 223.375839 29.754218 194.621621 112.1879195 2.049946094 -0.251641 104 90 SH21432 21432 Tyr1_2 spliced 57.512482 200.818181 129.1653315 2.111145963 0.18282 104 91 SH15799 15799 YDL061C_4_341182_340627_INTRON_1_408 intron 30.060781 178.865575 30.060781 149.804794 89.9327875 1.953918055 0.01779 104 92 SH8573 8573 snR19 / U1 RNA U1 361 373 37.478804 172.210477 104.8446405 2.020546235 0.231291 104 93 SH10863 10863 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1201 1219 34.145022 161.693545 97.9192835 1.990868227 0.199767 104 94 SH1864 1864 Leu9 tRNA 61 77 50.938789 190.096094 120.5174415 2.081049903 0.221263 104 95 SH2809 2809 Pro6 3' flank 29.177011 129.309493 79.243252 1.89896229 0.070829 104 96 SH20069 20069 YCR028C-A spliced 42.407211 222.20458 132.3058955 2.121579197 -0.246366 104 97 SH15451 15451 YBL087C_2_60732_59815_INTRON_43_546 intron 33.306376 220.511582 33.306376 188.205206 110.755791 2.044366443 -0.059969 104 98 SH15938 15938 YDL115C_4_255042_253994_INTRON_1_88 intron 143.138478 399.758379 143.138478 257.619901 200.3791895 2.301852616 0.511251 104 99 SH14983 14983 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.914023 170.114048 27.914023 143.200025 85.557024 1.93225567 -0.102041 104 100 SH15 15 Ala1 5' flank 31.736413 184.514623 108.125518 2.033928201 -0.084392 104 101 SH8317 8317 snoRNA cluster4 intergenic 29.868548 171.653808 29.868548 142.78526 86.326904 1.936146166 0.042753 104 102 SH8092 8092 snoRNA cluster 2 3' 29.867912 193.113477 29.867912 164.245565 97.0567385 1.987025693 -0.07012 104 103 SH11940 11940 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6586 6603 37.453636 145.908499 91.6810675 1.962279661 0.477028 104 104 SH13399 13399 MT COX1 intronic 31.740598 193.581151 31.740598 162.840553 97.2905755 1.988070772 0.056082 105 2 SH6326 6326 snR42 3' 31.666857 151.74743 91.7071435 1.962403166 0.115371 105 3 SH4954 4954 snR9 176-187 + 3' 176 29.54716 136.214065 82.8806125 1.918452952 0.056685 105 4 SH10221 10221 RUF6 RUF6 951 965 53.245092 178.713449 115.9792705 2.064380373 0.388325 105 5 SH20810 20810 YKL186C spliced 29.597412 175.977637 102.7875245 2.011940407 -0.153433 105 6 SH12696 12696 MT ORF 8 ORF8 29.607469 185.842705 29.607469 157.235236 93.4213525 1.97044615 -0.05296 105 7 SH21623 21623 copy of SH7518 29.597422 143.475461 86.5364415 1.937199032 0.01979 105 8 SH9661 9661 RUF4 RUF4 81 98 29.559154 147.480364 88.519759 1.947040223 -0.004465 105 9 SH16541 16541 YER131W_5_423587_424307_INTRON_1_361 3' exon 318.463817 891.481882 318.463817 574.018065 446.240941 2.649569413 0.000909 105 10 SH16332 16332 YDR471W_4_1401759_1402553_INTRON_32_415 intron 29.375769 191.672249 29.375769 163.29648 96.3361245 1.983789171 -0.099906 105 11 SH12903 12903 MT COX1 Exon2 / cox1ai2 29.230896 177.302008 29.230896 149.071112 89.151004 1.950126238 -0.036331 105 12 SH9201 9201 snR7 U5 RNA 3' 29.06092 143.88865 86.474785 1.936889491 -0.020977 105 13 SH14467 14467 MT 21S rRNA 21S rRNA3 28.880647 186.109893 28.880647 158.229246 93.5549465 1.971066755 -0.109646 105 14 SH3682 3682 Val2 3' flank 30.78064 164.421443 97.6010415 1.989454452 -0.011144 105 15 SH16388 16388 YER044C-A_5_239773_238459_INTRON_64_151 5' exon 106.249169 394.487518 106.249169 289.238349 197.743759 2.296102786 -0.005475 105 16 SH7207 7207 snR64 101 + 3' 101 30.495578 146.405356 88.450467 1.94670013 0.066187 105 17 SH8728 8728 LSR1 / U2 RNA U2 281 300 28.363259 148.403188 88.3832235 1.946369837 -0.09623 105 18 SH17953 17953 YLR185W_12_522665_523290_INTRON_8_366 exon/intron 37.528818 230.639399 37.528818 194.110581 115.8196995 2.063782434 -0.017837 105 19 SH16716 16716 YGL031C_7_438393_437938_INTRON_1_456 intron 28.293968 157.13722 28.293968 129.843252 79.06861 1.898004104 0.004209 105 20 SH10148 10148 RUF6 RUF6 586 605 32.365237 192.974034 112.6696355 2.051806889 -0.136532 105 21 SH9830 9830 RUF5-1 5' 36.436691 160.906075 98.671383 1.994191215 0.312083 105 22 SH19607 19607 RNA14 1.1 28.245372 149.302563 88.7739675 1.94828563 -0.10971 105 23 SH19998 19998 YBR048W spliced 96.914965 236.334131 166.624548 2.221738984 0.293839 105 24 SH20633 20633 YHR123W spliced 56.777284 218.324725 137.5510045 2.138463766 -0.004688 105 25 SH20278 20278 YDR450W spliced 28.158555 152.31791 90.2382325 1.95539058 -0.131776 105 26 SH303 303 Arg4 3' flank 28.138766 144.299285 86.2190255 1.93560311 -0.091111 105 27 SH17804 17804 YKL190W_11_82949_83552_INTRON_53_128 intron 32.192989 197.384423 32.192989 166.191434 99.1922115 1.996477573 0.061843 105 28 SH19771 19771 Negative Control 30.16229 154.205504 92.183897 1.964655064 0.001332 105 29 SH14841 14841 MT tRNA Asp tRNA Asp 136.930917 516.167031 136.930917 380.236114 258.5835155 2.412600835 -0.254255 105 30 SH5773 5773 snR35 snR35 51 67 30.188982 173.361588 101.775285 2.007642327 -0.101221 105 31 SH4285 4285 telomerase RNA telomerase 461 475 75.226354 218.832558 147.029456 2.16740435 0.219499 105 32 SH4275 4275 telomerase RNA telomerase 411 425 32.273826 157.602563 94.9381945 1.977440968 0.120444 105 33 SH19105 19105 YOR312C_15_901173_900242_INTRON_2_427 intron 32.310169 240.230579 32.310169 208.92041 120.6152895 2.081402364 -0.283898 105 34 SH17645 17645 YJR145C_10_702761_701720_INTRON_15_270 intron 50.794963 263.167394 50.794963 213.372431 132.083697 2.120849216 -0.036227 105 35 SH527 527 Cys1 5' flank 45.754141 200.033955 122.894048 2.08953085 0.038399 105 36 SH13011 13011 MT COX1 COX1ai2 32.502348 163.630045 32.502348 132.127697 82.3150225 1.915479101 0.281184 105 37 SH7555 7555 snR79 3' 30.543514 142.379112 86.461313 1.936821826 0.092036 105 38 SH8625 8625 snR19 / U1 RNA U1 621 635 316.007661 521.233854 418.6207575 2.621820759 0.153247 105 39 SH6370 6370 snR43 snR43 91 109 30.774843 168.923329 99.849086 1.999344094 -0.038941 105 40 SH3851 3851 RNaseP RNaseP 221 233 32.986758 194.600632 113.793695 2.0561182 -0.127909 105 41 SH5363 5363 snR30 3' 31.033071 163.165441 97.099256 1.987215902 0.011915 105 42 SH14250 14250 MT tRNA Ser 3' 31.149192 218.778639 31.149192 188.629447 109.8893195 2.040955484 -0.143983 105 43 SH21237 21237 YOR293W spliced 48.113614 180.994749 114.5541815 2.059010947 0.295387 105 44 SH6243 6243 snR42 5' - 15 -4 15 31.293976 201.615269 116.4546225 2.066156732 -0.250773 105 45 SH12549 12549 MT_ORF6 + ORF7 (hypothetical) 3' 29.193764 145.335543 29.193764 117.141779 73.1677715 1.864319828 0.153909 105 46 SH8447 8447 snoRNA cluster 5 snR128 889.413643 2107.368105 889.413643 1218.954462 1054.184053 3.022916442 0.054553 105 47 SH11256 11256 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3166 3179 35.369581 141.037516 88.2035485 1.945486058 0.404152 105 48 SH11385 11385 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3811 3831 23522.36346 22994.33905 23258.35125 4.366578925 -0.340243 105 49 SH14122 14122 MT COB intronic 30.886081 165.209829 30.886081 135.323748 83.1049145 1.919626707 0.155133 105 50 SH10270 10270 RUF7 5' 32.794204 188.816449 110.8053265 2.044560638 -0.084005 105 51 SH15403 15403 YBL050W_2_125087_126081_INTRON_31_146 intron/exon 65.722158 319.655715 65.722158 254.933557 160.3278575 2.205008989 -0.206043 105 52 SH3373 3373 Thr4 5' flank 32.478618 161.495986 96.987302 1.986714878 0.107474 105 53 SH14023 14023 MT COB Exon4 32.353382 236.153156 32.353382 204.799774 118.576578 2.073998913 -0.239568 105 54 SH3140 3140 Ser4 3' flank 30.216441 140.979932 85.5981865 1.932464564 0.077058 105 55 SH8297 8297 snoRNA cluster4 intergenic 30.14049 148.270547 30.14049 119.130057 74.6352735 1.872944129 0.205597 105 56 SH19113 19113 YOR312C_15_901173_900242_INTRON_2_427 3' exon 32.103583 178.764071 32.103583 147.660488 89.8820355 1.953672899 0.165913 105 57 SH1074 1074 Gly3 3' flank 30.019361 151.278607 90.648984 1.957362941 0.006998 105 58 SH13913 13913 MT COB Cytbi3 29.961079 187.649417 29.961079 158.688338 94.3247085 1.974625472 -0.035773 105 59 SH1317 1317 Ile3 5' flank 29.897856 154.860415 92.3791355 1.965573894 -0.020376 105 60 SH3298 3298 Thr2 3' flank 27.819065 146.872389 87.345727 1.941241664 -0.128951 105 61 SH11882 11882 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6296 6314 35.76834 164.900415 100.3343775 2.001449761 0.248527 105 62 SH15285 15285 MT 9S rRNA 9S 650.546668 1513.595389 650.546668 864.048721 757.2976945 2.879266635 0.213576 105 63 SH7936 7936 snoRNA cluster1 3' 27.591194 161.062555 27.591194 134.471361 81.0312775 1.908652686 -0.076545 105 64 SH2849 2849 Pro7 tRNA-intron 51 67 96.486731 287.399942 191.9433365 2.28317304 -0.087514 105 65 SH8463 8463 snoRNA cluster 5 snR128/3' 33.376526 203.628256 33.376526 171.25173 102.314128 2.009935607 0.098861 105 66 SH11007 11007 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1921 1934 5374.975987 3063.760586 4219.368287 3.625247434 0.953282 105 67 SH11605 11605 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4911 4928 17094.69863 7000.106982 12047.40281 4.080893431 1.137683 105 68 SH63 63 Ala2 5' flank 31.060647 158.431619 94.746133 1.976561494 0.040338 105 69 SH17466 17466 YIL148W_9_68708_69528_INTRON_9_442 intron 27.007634 148.66284 27.007634 122.655206 74.83142 1.874083986 -0.044286 105 70 SH15477 15477 YBL091C-A_2_46858_46559_INTRON_35_122 intron 30.728486 190.278033 30.728486 160.549547 95.6390165 1.980635101 0.007267 105 71 SH5541 5541 snR33 5' - 12 -9 12 28.595733 178.363595 103.479664 2.01485501 -0.231478 105 72 SH13010 13010 MT COX1 COX1ai2 49.479869 243.658603 49.479869 195.178734 122.3293015 2.087530496 0.14343 105 73 SH17597 17597 YJL191W_10_73786_74610_INTRON_11_418 3' exon 28.162436 166.960392 28.162436 139.797956 83.980196 1.924176884 -0.064643 105 74 SH5456 5456 snR32 5' 33.591906 141.440689 87.5162975 1.942088936 0.294823 105 75 SH13681 13681 MT ORF 5 (hypothetical) 5' 27.725799 166.706666 27.725799 139.980867 83.853333 1.92352033 -0.098571 105 76 SH6767 6767 snR50 snR50 11 28 186.626594 368.49915 277.562872 2.443361373 0.138546 105 77 SH20068 20068 YBR230C spliced 29.179962 172.022685 100.6013235 2.002603694 -0.156893 105 78 SH21057 21057 YMR194W spliced 63.944794 220.005708 141.975251 2.152212645 0.072818 105 79 SH3206 3206 Ser5 3' flank 28.81866 131.413634 80.116147 1.903720055 0.032067 105 80 SH6180 6180 snR40 5' 32.268095 200.990993 116.629544 2.066808578 -0.208819 105 81 SH16168 16168 YDR139C_4_733917_733611_INTRON_150_222 intron 26.681601 144.998405 26.681601 119.316804 72.9992025 1.863318116 -0.046178 105 82 SH1138 1138 His1 5' flank 28.314981 172.415832 100.3654065 2.001584048 -0.220255 105 83 SH6434 6434 snR45 snR45 16 37 53.143343 203.157932 128.1506375 2.107720771 0.102663 105 84 SH12735 12735 MT COX1 Exon1 28.02354 164.459029 28.02354 137.435489 82.7295145 1.917660476 -0.061774 105 85 SH5176 5176 snR13 snR13 36 50 81.133165 234.311768 157.7224665 2.19789356 0.148009 105 86 SH16442 16442 YER074W_5_306319_307192_INTRON_4_469 intron 41.941933 251.502293 41.941933 210.56036 126.2511465 2.101235331 -0.132272 105 87 SH19584 19584 AEP2/ATP13 0.6 29.576379 155.951311 92.763845 1.967378742 -0.048498 105 88 SH10129 10129 RUF6 RUF6 491 507 26.084595 126.078359 76.081477 1.881278935 -0.138607 105 89 SH17089 17089 YHL001W_8_104270_105084_INTRON_130_527 intron 27.914094 210.007198 27.914094 183.093104 105.503599 2.023267275 -0.303168 105 90 SH16113 16113 YDR064W_4_579453_580447_INTRON_22_560 intron 28.033988 165.047012 28.033988 138.013024 83.023506 1.919201069 -0.064257 105 91 SH395 395 Asn1 56-70 56 70 67.561838 211.158545 139.3601915 2.144138734 0.202645 105 92 SH12582 12582 MT_15S MT_15S 30.191311 194.674982 30.191311 165.483671 97.837491 1.990505307 -0.053854 105 93 SH2303 2303 Phe2 3' flank 32.241119 140.123897 86.182508 1.935419128 0.217224 105 94 SH4734 4734 snR4 3' 30.686806 150.607808 90.647307 1.957354906 0.056234 105 95 SH2889 2889 Pro8 5' flank 28.181642 135.030637 81.6061395 1.911722833 -0.036168 105 96 SH10195 10195 RUF6 RUF6 821 840 29.317469 177.738647 103.528058 2.015058068 -0.181316 105 97 SH13364 13364 MT COX1 intronic 27.640107 208.53834 27.640107 181.898233 104.76917 2.020233503 -0.314955 105 98 SH19256 19256 YPL143W_16_282121_282969_INTRON_20_544 5' exon 33.396444 222.279364 33.396444 189.88292 111.639682 2.047818591 -0.07171 105 99 SH20032 20032 YBR181C spliced 29.751694 157.579878 93.665786 1.971580982 -0.044649 105 100 SH1924 1924 Lys1 3' flank 29.817523 130.657145 80.237334 1.90437649 0.108327 105 101 SH10989 10989 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1831 1847 35963.07995 22713.76923 29338.42459 4.467436789 0.229875 105 102 SH7311 7311 snR66 snR66 46 63 70.852419 247.621815 159.237117 2.202044306 -0.082513 105 103 SH18693 18693 YNL112W_14_413636_416278_INTRON_1274_2275 intron/exon 27.975424 135.547784 27.975424 108.57236 68.273892 1.834254661 0.129714 105 104 SH12247 12247 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.405178 244.677243 39.405178 206.272065 122.8386215 2.089334934 -0.123199 106 2 SH13709 13709 MT tRNAGlu (and 5' processing site for COB) tRNA / 3' 29.422081 200.614227 29.422081 172.192146 100.8071135 2.003491179 -0.142446 106 3 SH11821 11821 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5991 6008 40.157459 156.044143 98.100801 1.991672553 0.480335 106 4 SH7383 7383 snR68 136 + 3' 136 31.602005 160.059539 95.830772 1.981504987 0.065403 106 5 SH18178 18178 YLR448W_12_1028848_1029762_INTRON_16_399 intron 35.888274 230.789955 35.888274 195.901681 115.8949775 2.064064616 -0.069465 106 6 SH16249 16249 YDR397C_4_1266887_1266355_INTRON_38_129 5' exon 42.299729 248.651585 42.299729 207.351856 124.8257925 2.096304332 -0.092326 106 7 SH17288 17288 YHR141C_8_382752_381991_INTRON_5_445 intron 29.464875 168.762902 29.464875 140.298027 84.881451 1.928812795 0.02779 106 8 SH6112 6112 snR39B 5' 29.418966 153.333978 91.376472 1.960834386 -0.045862 106 9 SH5512 5512 snR32 3' 31.459697 174.800719 103.130208 2.013385894 -0.032545 106 10 SH2870 2870 Pro7 3' flank 29.22803 163.772892 96.500461 1.984529388 -0.112729 106 11 SH21261 21261 YPL079W spliced 35.392533 191.049988 113.2212605 2.053927986 -0.024689 106 12 SH3819 3819 RNaseP RNaseP 61 73 178.994445 330.437526 254.7159855 2.406056201 0.287894 106 13 SH3485 3485 Tyr1 5' flank 28.759398 166.707941 97.7336695 1.990044205 -0.160663 106 14 SH4685 4685 snR4 5' 28.604578 139.950152 84.277365 1.925710949 -0.032683 106 15 SH21930 21930 copy of SH21370 36.708062 197.648471 117.1782665 2.068847069 -0.072819 106 16 SH19818 19818 Negative Control 33.503345 197.173981 115.338663 2.061974913 -0.132214 106 17 SH5948 5948 snR36 snR36 196 220 28.314892 127.349353 77.8321225 1.891158874 0.021802 106 18 SH5849 5849 snR35 snR35 431 448 46.702692 221.730224 134.216458 2.127805774 -0.178423 106 19 SH10426 10426 RUF8 RUF8 56 78 30.302624 145.47024 87.886432 1.943921833 0.058205 106 20 SH16491 16491 YER117W_5_396765_397649_INTRON_43_513 5' exon 44.599396 241.497509 44.599396 197.898113 121.2487545 2.083677286 0.046307 106 21 SH4701 4701 snR4 snR4 41 62 30.266373 138.400409 84.333391 1.925999563 0.094927 106 22 SH9884 9884 RUF5-1 RUF5-1 226 240 30.232776 143.900528 87.066652 1.939851845 0.062205 106 23 SH10646 10646 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 116 135 38.331478 153.410595 95.8710365 1.981687423 0.453309 106 24 SH763 763 Gln4 3' flank 30.136859 153.95711 92.0469845 1.964009565 0.000887 106 25 SH5185 5185 snR13 snR13 81 97 75.940618 266.205398 171.073008 2.233181492 -0.165262 106 26 SH12345 12345 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 76.866096 241.203006 76.866096 165.33691 121.101503 2.083149533 0.816363 106 27 SH19474 19474 ADH1 46.242978 166.903968 106.573473 2.027649119 0.456795 106 28 SH19229 19229 YPL090C_16_378390_377286_INTRON_7_400 intron 36.08426 199.864275 36.08426 164.780015 100.4321375 2.001872706 0.260294 106 29 SH15600 15600 YBR089C-A_2_426588_426148_INTRON_1_114 intron/exon 30.013845 220.416731 30.013845 191.402886 110.7083655 2.044180439 -0.213092 106 30 SH5022 5022 snR10 snR10 141 153 38.126221 160.494718 99.3104695 1.996995035 0.3707 106 31 SH19935 19935 YBL026W spliced 30.044375 201.824426 115.9344005 2.064212321 -0.301339 106 32 SH4425 4425 telomerase RNA telomerase 1161 1182 28.048079 125.022515 76.535297 1.883861772 0.017613 106 33 SH7492 7492 snR71 76-90 + 3' 76 32.143517 190.797023 111.47027 2.047159053 -0.125621 106 34 SH9300 9300 RUF1 RUF1 76 92 32.2031 172.704881 102.4539905 2.010528878 0.023371 106 35 SH17358 17358 YIL052C_9_257061_256224_INTRON_38_509 intron 28.207235 173.507678 28.207235 146.300443 87.253839 1.940784544 -0.096726 106 36 SH434 434 Asp1 5' flank - tRNA10 5' flank 10 30.336607 144.247236 87.2919215 1.940974053 0.06737 106 37 SH7613 7613 snR189 snR189 136 155 30.447938 149.333603 89.8907705 1.953715103 0.0469 106 38 SH20855 20855 YLR061W spliced 34.696306 200.715602 117.705954 2.070798432 -0.146233 106 39 SH18744 18744 YNL162W_14_331319_332151_INTRON_5_516 intron 30.711697 201.431948 30.711697 171.720251 101.215974 2.005249059 -0.059465 106 40 SH14519 14519 MT 21S rRNA 21S rRNA3 28.773366 187.288498 28.773366 159.515132 94.144249 1.973793795 -0.123926 106 41 SH4034 4034 SRP RNA SRP RNA 61 80 28.895071 124.712383 76.803727 1.885382295 0.080858 106 42 SH20635 20635 YHR141C spliced 35.282411 211.466025 123.374218 2.091224413 -0.248014 106 43 SH10422 10422 RUF8 RUF8 36 55 36.421568 196.547277 116.4844225 2.066267851 -0.066194 106 44 SH6415 6415 snR45 5' 33.305644 223.269084 128.287364 2.108183882 -0.407096 106 45 SH9013 9013 snR17a / U3a U3a 351 363 33.290018 173.485124 103.387571 2.014468332 0.07687 106 46 SH18129 18129 YLR388W_12_898158_898821_INTRON_1_488 3' exon 37.419795 220.81482 37.419795 184.395025 110.90741 2.044960563 0.091935 106 47 SH20940 20940 YLR426W spliced 33.106499 163.208642 98.1575705 1.991923801 0.132551 106 48 SH13935 13935 MT COB Cytbi3 30.877101 217.502334 30.877101 187.625233 109.251167 2.038426085 -0.145486 106 49 SH7815 7815 snoRNA cluster1 intergenic 30.720917 215.205707 30.720917 185.48479 108.1028535 2.033837158 -0.137244 106 50 SH3406 3406 Thr4 3' flank 28.505917 125.018519 76.762218 1.885147515 0.05094 106 51 SH4706 4706 snR4 snR4 66 78 957.108081 1106.152652 1031.630367 3.013524117 0.304297 106 52 SH18761 18761 YNL162W_14_331319_332151_INTRON_5_516 intron 30.295251 166.435016 30.295251 137.139765 83.717508 1.922816292 0.104066 106 53 SH2105 2105 Met1 5' flank 32.230728 160.605179 96.4179535 1.984157909 0.098771 106 54 SH4347 4347 telomerase RNA telomerase 771 788 40.279941 242.033254 141.1565975 2.149701181 -0.471385 106 55 SH14025 14025 MT COB Exon4 30.063783 194.690805 30.063783 165.627022 97.8454025 1.990540424 -0.06334 106 56 SH19751 19751 Negative Control 34.065569 229.787997 131.926783 2.120332972 -0.457304 106 57 SH16110 16110 YDR064W_4_579453_580447_INTRON_22_560 intron 31.99997 207.276554 31.99997 176.276584 104.138277 2.017610388 -0.009256 106 58 SH14844 14844 MT tRNA Asp 3' 31.958374 214.494722 31.958374 183.536348 107.747361 2.032406642 -0.067072 106 59 SH11598 11598 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4876 4893 39175.42587 33953.76957 36564.59772 4.5630608 -0.297272 106 60 SH21652 21652 copy of SH8772 31.860588 128.732459 80.2965235 1.904696743 0.25947 106 61 SH11335 11335 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3561 3578 165.058726 361.152998 263.105862 2.420130524 0.039855 106 62 SH8647 8647 snR19 / U1 RNA 3' 34.74356 134.040381 84.3919705 1.926301128 0.408313 106 63 SH2087 2087 Lys4 3' flank 27.667986 130.593819 79.1309025 1.898346119 -0.04658 106 64 SH2537 2537 Pro2 5' flank 35.579838 165.392692 100.486265 2.002106704 0.237167 106 65 SH5553 5553 snR33 snR33 51 71 31.503339 150.340176 90.9217575 1.958667822 0.112174 106 66 SH6884 6884 snR56 snR56 51 70 31.407201 139.378053 85.392627 1.931420374 0.167163 106 67 SH19387 19387 YPR043W_16_654161_654842_INTRON_3_405 intron 107.646267 332.768913 107.646267 226.122646 166.8844565 2.222415889 0.479167 106 68 SH10589 10589 RUF8 RUF8 871 890 29.189371 121.051347 75.120359 1.875757655 0.126392 106 69 SH20061 20061 YBR255C-A spliced 29.034968 170.150626 99.592797 1.998227929 -0.157431 106 70 SH19691 19691 Negative Control 43.463209 190.031932 116.7475705 2.067247852 0.123025 106 71 SH481 481 Asp2 5' flank 30.582925 153.543195 92.06306 1.964085406 0.03356 106 72 SH9472 9472 RUF2 RUF2 201 215 30.351614 141.678064 86.014839 1.934573381 0.082609 106 73 SH14067 14067 MT COB Cytbi4 37.730643 247.605793 37.730643 210.87515 124.3028965 2.094481249 -0.199696 106 74 SH11117 11117 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2471 2487 473.066197 468.59704 470.8316185 2.67286562 0.821125 106 75 SH21094 21094 YNL044W spliced 31.534645 163.024432 97.2795385 1.988021502 0.042766 106 76 SH3512 3512 Tyr1 3' flank 31.31587 153.618829 92.4673495 1.965988409 0.082311 106 77 SH7759 7759 snoRNA cluster1 snR76 29.264215 195.410202 29.264215 167.145987 98.205101 1.992134047 -0.126677 106 78 SH8213 8213 snoRNA cluster 3; snR51 29.084421 181.932626 29.084421 153.848205 91.466313 1.961261173 -0.072309 106 79 SH19855 19855 Negative Control 29.823017 178.74275 104.2828835 2.018213031 -0.155078 106 80 SH8623 8623 snR19 / U1 RNA U1 611 630 32.3674 161.164672 96.766036 1.985722951 0.103148 106 81 SH2508 2508 Pro1 tRNA 31 43 471.106925 453.863688 462.4853065 2.665097939 0.869191 106 82 SH1626 1626 Leu5 5' flank - tRNA12 12 223.891968 408.245119 316.0685435 2.499781275 0.162965 106 83 SH10741 10741 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 591 608 38.919858 204.067837 121.4938475 2.084554286 -0.106085 106 84 SH10445 10445 RUF8 RUF8 151 167 40.486168 194.015078 117.250623 2.069115159 0.033037 106 85 SH8868 8868 LSR1 / U2 RNA U2 981 998 29.698444 137.094589 83.3965165 1.92114791 0.062419 106 86 SH16413 16413 YER056C-A_5_270183_269421_INTRON_38_434 intron 29.607648 170.465324 29.607648 141.857676 85.732662 1.933146309 0.029355 106 87 SH13756 13756 MT COB intronic 27.810326 174.239835 27.810326 147.429509 87.6199175 1.94260284 -0.132563 106 88 SH3583 3583 Val1 5' flank 43.673593 216.475007 130.0743 2.114191497 -0.168891 106 89 SH14777 14777 MT ORF11; tRNA Leu; tRNA Gln tRNA Gln 35.822011 227.242904 35.822011 192.420893 114.121452 2.057367289 -0.031727 106 90 SH12780 12780 MT COX1 COX1ai1 29.769824 206.353156 29.769824 177.583332 103.676578 2.015680654 -0.151804 106 91 SH19505 19505 ACT1 29.937203 138.031321 83.984262 1.92419791 0.073977 106 92 SH2431 2431 Phe5 5' flank 31.934669 169.634775 100.784722 2.003394702 0.025947 106 93 SH638 638 Gln2 5' flank 30.375984 180.797322 105.586653 2.023609023 -0.132346 106 94 SH11449 11449 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4131 4148 43.383093 198.853484 121.1182885 2.083209725 0.018222 106 95 SH12278 12278 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.865721 218.400984 30.865721 188.535263 109.700492 2.040208575 -0.154092 106 96 SH20407 20407 YFR031C-A spliced 32.93983 175.361101 104.1504655 2.017661215 0.046053 106 97 SH13176 13176 MT COX1 Exon4 29.427978 174.160997 29.427978 145.733019 87.5804985 1.942407413 -0.004468 106 98 SH16901 16901 YGL226C-A_7_73156_72747_INTRON_22_170 intron/exon 27.708461 177.602126 27.708461 150.893665 89.301063 1.950856629 -0.158391 106 99 SH808 808 Glu1 tRNA 56 68 35.322217 166.959925 101.141071 2.004927548 0.212547 106 100 SH1573 1573 Leu4 tRNA-exon/intron 36 53 33.533573 196.006401 114.769987 2.059828332 -0.12036 106 101 SH1689 1689 Leu6 tRNA 11 25 10765.16374 10128.53326 10446.8485 4.018985296 -0.048643 106 102 SH16543 16543 YER133W_5_432491_433954_INTRON_178_702 5' exon 29.851257 179.622208 29.851257 150.770951 90.311104 1.955741151 -0.001933 106 103 SH5263 5263 snR30 snR30 166 182 31.771717 173.032354 102.4020355 2.010308589 -0.003765 106 104 SH21363 21363 Ile2_3 spliced 33.701767 188.670127 111.185947 2.046049899 -0.049995 107 2 SH12613 12613 MT_15S MT_15S 33.607918 212.896206 33.607918 180.288288 106.948103 2.029173086 0.023347 107 3 SH8065 8065 snoRNA cluster 2 snR61 33.615297 190.949888 33.615297 158.334591 95.974944 1.982157867 0.191866 107 4 SH11004 11004 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1906 1924 7801.292936 3564.50115 5682.897043 3.754569788 1.196233 107 5 SH3331 3331 Thr3 tRNA 1 15 54.987436 194.111979 124.5497075 2.095342712 0.226225 107 6 SH3473 3473 Tyr1 5' flank 31.489088 140.173503 85.8312955 1.933645668 0.167957 107 7 SH14721 14721 MT tRNA cys; tRNA his tRNA Cys 29.338536 171.498235 29.338536 143.159699 86.2491175 1.93575466 0.003005 107 8 SH16892 16892 YGL226C-A_7_73156_72747_INTRON_22_170 5' exon 33.518967 213.379441 33.518967 180.860474 107.1897205 2.030153138 0.014825 107 9 SH20173 20173 YDL137W spliced 33.423309 183.90366 108.6634845 2.036083627 -0.016755 107 10 SH4345 4345 telomerase RNA telomerase 761 780 29.091225 162.531501 95.811363 1.981417018 -0.116302 107 11 SH17207 17207 YHR039C-A_8_187670_187164_INTRON_4_165 intron 35.23505 211.352839 35.23505 177.117789 106.1764195 2.026028076 0.109924 107 12 SH12026 12026 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7016 7038 28.809713 155.085157 91.947435 1.963539619 -0.098491 107 13 SH19712 19712 Negative Control 93.289963 251.230667 172.260315 2.236185237 0.139333 107 14 SH15894 15894 YDL082W_4_308423_309387_INTRON_5_369 3' exon 32.655348 217.707562 32.655348 186.052214 109.353781 2.038833804 -0.064202 107 15 SH21715 21715 copy of SH11500 40.764759 168.647088 104.7059235 2.019971252 0.346934 107 16 SH12468 12468 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 49111.08199 81208.75095 49111.08199 32098.66897 40604.87548 4.608578183 0.085415 107 17 SH21840 21840 copy of SH17170 30.352308 154.800703 92.5765055 1.966500783 0.011244 107 18 SH13496 13496 MT COX1 intronic 32.37181 191.84915 32.37181 160.47734 96.424575 1.984187733 0.107745 107 19 SH13098 13098 MT COX1 COX1ai3 36.447574 219.270491 36.447574 183.822917 110.1352455 2.041926324 0.080078 107 20 SH17904 17904 YLR061W_12_263195_263949_INTRON_13_401 intron 37.45219 239.021986 37.45219 202.569796 120.010993 2.079221029 -0.112316 107 21 SH16736 16736 YGL076C_7_365994_364333_INTRON_565_1032 intron 28.234545 190.858081 28.234545 163.623536 95.9290405 1.981950101 -0.183758 107 22 SH18839 18839 YNL302C_14_62942_61957_INTRON_21_571 intron/exon 32.265698 196.619606 32.265698 165.353908 98.809803 1.994800033 0.071193 107 23 SH17184 17184 YHR021C_8_148660_147862_INTRON_4_553 intron 30.169115 211.292505 30.169115 182.12339 106.1462525 2.025904666 -0.152546 107 24 SH8309 8309 snoRNA cluster4 intergenic 32.129434 213.039044 32.129434 181.90961 107.019522 2.029463007 -0.045654 107 25 SH8410 8410 snoRNA cluster 5 snR190 28.01152 163.619755 28.01152 136.608235 82.3098775 1.915451955 -0.057973 107 26 SH10046 10046 RUF6 RUF6 76 97 29.976167 155.141659 92.558913 1.966418246 -0.016417 107 27 SH14463 14463 MT 21S rRNA 21S rRNA3 27.917114 184.610222 27.917114 157.693108 92.805111 1.967571895 -0.177316 107 28 SH15603 15603 YBR119W_2_479296_480281_INTRON_9_97 5' exon 31.920915 196.396741 31.920915 165.475826 98.6983705 1.994309983 0.050361 107 29 SH27 27 Ala1 tRNA 31 45 369.120017 379.485991 374.303004 2.573223313 0.874083 107 30 SH18592 18592 YNL069C_14_494998_493953_INTRON_29_477 5' exon 744.24012 1673.300638 744.24012 930.060518 837.150319 2.922803447 0.263817 107 31 SH3705 3705 Val3 tRNA 6 22 206.598651 472.370861 339.484756 2.530820278 -0.182715 107 32 SH4244 4244 telomerase RNA telomerase 256 270 44.07862 183.769286 113.923953 2.056615046 0.208044 107 33 SH1404 1404 Leu1 tRNA 91 108 27.9557 149.378322 88.667011 1.947762068 -0.131816 107 34 SH20118 20118 YDL075W spliced 33.072277 156.621297 94.846787 1.977022623 0.172475 107 35 SH19281 19281 YPL143W_16_282121_282969_INTRON_20_544 intron 34.179302 230.675594 34.179302 197.496292 115.837797 2.06385029 -0.121639 107 36 SH9843 9843 RUF5-1 RUF5-1 21 41 30.224209 163.361744 96.7929765 1.985843845 -0.041139 107 37 SH13814 13814 MT COB Cytbi2 32.395088 248.212555 32.395088 216.817467 124.6062775 2.095539922 -0.362847 107 38 SH20805 20805 YKL180W spliced 30.491253 186.011749 108.251501 2.034433927 -0.154154 107 39 SH5558 5558 snR33 snR33 76 93 43.046489 167.610073 105.328281 2.022544996 0.398899 107 40 SH21697 21697 copy of SH10662 134.551613 338.07195 236.3117815 2.373485374 -0.057243 107 41 SH12974 12974 MT COX1 COX1ai2 30.918272 176.738221 30.918272 146.819949 88.8691105 1.948750833 0.092464 107 42 SH9619 9619 RUF3 3' 33.112976 138.066302 85.589639 1.932421195 0.284582 107 43 SH20128 20128 YDL082W spliced 31.087854 170.550541 100.8191975 2.003543236 -0.029763 107 44 SH7705 7705 snoRNA cluster1 intergenic/snR77 31.105697 194.282414 31.105697 164.176717 97.641207 1.989633139 0.010007 107 45 SH8407 8407 snoRNA cluster 5 snR190 33.166463 203.698762 33.166463 171.532299 102.349381 2.01008522 0.085395 107 46 SH20591 20591 YHR039C-A spliced 37.260457 248.52711 142.8937835 2.155013336 -0.580473 107 47 SH3088 3088 Ser3 3' flank 32.951668 192.359584 112.655626 2.051752885 -0.109639 107 48 SH14005 14005 MT COB intronic 30.726027 171.652226 30.726027 141.926199 86.326113 1.936142186 0.106982 107 49 SH4887 4887 snR8 3' 30.571012 152.015284 91.293148 1.960438183 0.040853 107 50 SH14475 14475 MT 21S rRNA 21S rRNA3 30.421618 183.85817 30.421618 154.436552 92.429085 1.965808654 0.017885 107 51 SH13284 13284 MT COX1 Exon 5a 32.330351 185.203895 32.330351 153.873544 93.1019475 1.968958766 0.147132 107 52 SH2881 2881 Pro8 5' flank 669.739535 714.418068 692.0788015 2.840155547 0.559787 107 53 SH6024 6024 snR37 snR37 36 57 30.099713 131.318479 80.709096 1.906922483 0.124231 107 54 SH12731 12731 MT COX1 Exon1 32.064701 162.069215 32.064701 131.004514 81.5346075 1.911341985 0.259285 107 55 SH72 72 Ala2 5' flank - tRNA10 -4 10 126.139067 376.415102 251.2770845 2.400152884 -0.32212 107 56 SH2307 2307 Phe2 3' flank 34.009015 190.990279 112.499647 2.05115116 -0.059748 107 57 SH11935 11935 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6561 6578 185.869507 428.014545 306.942026 2.487056355 -0.130803 107 58 SH4696 4696 snR4 snR4 16 33 42.035268 210.736853 126.3860605 2.101699177 -0.132745 107 59 SH4870 4870 snR8 snR8 131 147 33.924394 153.684834 93.804614 1.972224201 0.23926 107 60 SH6399 6399 snR43 3' 25.843392 120.0085 72.925946 1.862882072 -0.116448 107 61 SH11712 11712 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5446 5459 607.209168 497.706077 552.4576225 2.74229897 1.028771 107 62 SH4215 4215 telomerase RNA telomerase 111 127 29.78357 153.68453 91.73405 1.962530568 -0.02215 107 63 SH3026 3026 Ser2 3' flank 27.729938 115.449994 71.589966 1.854852156 0.060349 107 64 SH11881 11881 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6291 6309 122.790166 271.941751 197.3659585 2.295272248 0.255073 107 65 SH17525 17525 YJL136C_10_156971_156248_INTRON_25_484 intron 31.589451 215.744197 31.589451 185.154746 108.3720985 2.034917483 -0.095796 107 66 SH4009 4009 SRP RNA 5' 29.502775 139.956852 84.7298135 1.92803625 0.032395 107 67 SH15341 15341 YAL030W_1_87288_87754_INTRON_103_215 intron/exon 31.367989 210.594143 31.367989 180.226154 105.7970715 2.024473646 -0.069058 107 68 SH13017 13017 MT COX1 COX1ai2 31.217649 200.52744 31.217649 170.309791 100.76372 2.003304192 -0.02054 107 69 SH14068 14068 MT COB Cytbi4 31.038573 227.642647 31.038573 197.604074 114.3213235 2.058127244 -0.226679 107 70 SH14921 14921 MT tRNA Tyr 3' 28.887421 217.654653 28.887421 189.767232 109.3273265 2.038728728 -0.275472 107 71 SH21229 21229 YOR234C spliced 28.677804 170.431296 99.55455 1.998061114 -0.184453 107 72 SH4629 4629 snR3 snR3 61 77 28.459593 146.359887 87.40974 1.941559828 -0.078284 107 73 SH17979 17979 YLR211C_12_564531_563792_INTRON_19_77 intron/exon 28.242556 172.486417 28.242556 145.243861 86.7432085 1.938235482 -0.088442 107 74 SH6365 6365 snR43 snR43 66 83 28.035055 184.950911 106.492983 2.027320992 -0.305342 107 75 SH4695 4695 snR4 snR4 11 25 1090.720912 1377.467497 1234.094205 3.091348313 0.121948 107 76 SH2372 2372 Phe4 5' flank 29.530022 126.324493 77.9272575 1.891689392 0.114918 107 77 SH6916 6916 snR58 5' 33.066014 176.846389 104.9562015 2.021008105 0.036401 107 78 SH2359 2359 Phe3 3' flank 29.189408 161.936403 95.5629055 1.980289346 -0.106338 107 79 SH15541 15541 YBR078W_2_393082_394818_INTRON_59_388 intron 30.857584 200.457051 30.857584 170.599467 100.7285255 2.003152477 -0.043953 107 80 SH2658 2658 Pro4 5' flank 28.853183 148.827979 88.840581 1.94861139 -0.062389 107 81 SH9963 9963 RUF5-1 RUF5-1 621 640 26.864299 109.697723 68.281011 1.834299943 0.038009 107 82 SH19340 19340 YPL241C_16_96258_95372_INTRON_26_105 intron/exon 26.692178 162.069171 26.692178 136.376993 81.5345855 1.911341868 -0.156335 107 83 SH3292 3292 Thr2 61-72 + 3' flank 61 90.431098 237.067852 163.749475 2.214179916 0.223614 107 84 SH6424 6424 snR45 5' 35.260699 153.892411 94.576555 1.975783491 0.310112 107 85 SH6436 6436 snR45 snR45 26 44 31.543203 165.803235 98.673219 1.994199296 0.026101 107 86 SH6743 6743 snR49 3' 29.667618 156.809604 93.238611 1.969595795 -0.046552 107 87 SH8834 8834 LSR1 / U2 RNA U2 811 825 29.613644 165.457233 97.5354385 1.989162441 -0.093817 107 88 SH2779 2779 Pro6 5' flank - tRNA3 3 43.725999 205.214486 124.4702425 2.095065536 -0.04794 107 89 SH3086 3086 Ser3 3' flank 29.673723 160.060662 94.8671925 1.977116048 -0.062749 107 90 SH3319 3319 Thr3 5' flank 28.899049 143.85475 86.3768995 1.936397611 -0.032557 107 91 SH42 42 Ala1 3' flank 31.719054 172.393062 102.056058 2.008838789 -0.003105 107 92 SH11317 11317 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3471 3489 2021.833454 1941.37805 1981.605752 3.297017254 0.38817 107 93 SH17592 17592 YJL191W_10_73786_74610_INTRON_11_418 intron 31.249574 194.010984 31.249574 163.76141 97.505492 1.989029078 0.021207 107 94 SH17881 17881 YLR048W_12_242233_243350_INTRON_91_449 intron 32.393485 239.09216 32.393485 207.698675 120.04608 2.079347983 -0.269303 107 95 SH21600 21600 copy of SH6671 29.887004 169.679895 99.7834495 1.999058513 -0.098205 107 96 SH19743 19743 Negative Control 31.012887 166.675101 98.843994 1.994950286 -0.010924 107 97 SH4861 4861 snR8 snR8 86 100 33.053574 176.452311 104.7529425 2.020166231 0.039714 107 98 SH11373 11373 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3751 3771 35.084228 172.563708 103.823968 2.016297623 0.148741 107 99 SH19477 19477 ADH1 30.541295 130.519846 80.5305705 1.905960776 0.159658 107 100 SH6724 6724 snR49 snR49 146 162 105.937489 272.3341 189.1357945 2.276773728 0.106391 107 101 SH9897 9897 RUF5-1 RUF5-1 291 303 33.534318 170.202764 101.868541 2.008040086 0.113921 107 102 SH6296 6296 snR42 snR42 261 278 34.547418 177.220777 105.8840975 2.024830739 0.085334 107 103 SH20385 20385 YFL034C-B spliced 32.709675 164.959352 98.8345135 1.994908629 0.099168 107 104 SH16191 16191 YDR381C-A_4_1238839_1238301_INTRON_27_220 5' exon 31.808717 178.466179 31.808717 147.657462 89.7330895 1.952952621 0.14678 108 2 SH7134 7134 snR63 snR63 176 192 31.3854 164.298321 97.8418605 1.990524702 0.025989 108 3 SH8368 8368 snoRNA cluster 5 5' 44.190507 239.97616 44.190507 196.785653 120.48808 2.080944084 0.053177 108 4 SH20131 20131 YDL082W spliced 37.774684 159.807192 98.790938 1.994717109 0.366847 108 5 SH16802 16802 YGL137W_7_249872_252741_INTRON_19_218 intron 31.393069 191.124475 31.393069 160.731406 96.0622375 1.982552698 0.048746 108 6 SH2203 2203 Met2 3' flank 29.25902 140.070039 84.6645295 1.927701499 0.014292 108 7 SH1431 1431 Leu2 5' flank 31.336653 181.027016 106.1818345 2.026050224 -0.075431 108 8 SH15538 15538 YBR078W_2_393082_394818_INTRON_59_388 intron 33.38118 190.604209 33.38118 158.223029 95.8021045 1.981375049 0.179517 108 9 SH12214 12214 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 48.034843 239.564193 48.034843 192.52935 120.2820965 2.080200989 0.155345 108 10 SH17203 17203 YHR039C-A_8_187670_187164_INTRON_4_165 5' exon 28.971601 167.374313 28.971601 139.402712 84.1871565 1.925245841 -0.002778 108 11 SH7201 7201 snR64 snR64 71 87 49.74098 203.681059 126.7110195 2.102814385 0.051522 108 12 SH11869 11869 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6231 6247 15784.13342 11103.97949 13444.05645 4.128530327 0.300337 108 13 SH10554 10554 RUF8 RUF8 696 712 30.661978 134.683732 82.672855 1.917362936 0.14349 108 14 SH16548 16548 YER133W_5_432491_433954_INTRON_178_702 intron 34.670068 203.880682 34.670068 170.210614 102.440341 2.010471015 0.157684 108 15 SH1938 1938 Lys1 3' flank 32.51959 139.902136 86.210863 1.935561993 0.236355 108 16 SH4742 4742 snR4 3' 36.564414 182.271609 109.4180115 2.039088818 0.1008 108 17 SH5782 5782 snR35 snR35 96 108 61.211333 200.831676 131.0215045 2.117342582 0.229975 108 18 SH6130 6130 snR39B 5' - 11 -9 11 32.417368 148.259649 90.3385085 1.955872916 0.182818 108 19 SH21316 21316 YPL249C-A spliced 36.505133 183.963416 110.2342745 2.042316648 0.07953 108 20 SH8926 8926 snR17a / U3a 5' 29.324922 160.191965 94.7584435 1.976617918 -0.087952 108 21 SH245 245 Arg3 3' flank 28.272165 142.076573 85.174369 1.930308925 -0.069053 108 22 SH3446 3446 Trp1 tRNA 61 78 32.297932 188.433393 110.3656625 2.042833975 -0.098845 108 23 SH16734 16734 YGL076C_7_365994_364333_INTRON_565_1032 intron 30.185796 177.309542 30.185796 148.123746 89.154771 1.950144589 0.035545 108 24 SH11059 11059 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2181 2197 38810.27264 28874.34857 33842.31061 4.529460007 -0.052244 108 25 SH10378 10378 RUF7 3' 30.017239 194.5299 112.2735695 2.05027753 -0.240302 108 26 SH5555 5555 snR33 snR33 61 77 64.383529 233.960348 149.1719385 2.173687133 -0.04891 108 27 SH17237 17237 YHR079C-A_8_262554_262193_INTRON_114_199 5' exon 29.878127 184.14145 29.878127 155.263323 92.570725 1.966473665 -0.023851 108 28 SH18241 18241 YML026C_13_223828_222987_INTRON_48_448 intron 29.831777 181.582721 29.831777 152.750944 91.2913605 1.960429679 -0.013857 108 29 SH16303 16303 YDR450W_4_1359912_1360787_INTRON_48_482 intron 33.81953 204.151827 33.81953 171.332297 102.5759135 2.011045393 0.116846 108 30 SH2386 2386 Phe4 5' flank 30.789367 172.033765 101.411566 2.006087489 -0.056596 108 31 SH4874 4874 snR8 snR8 151 163 31.792739 153.055097 92.423918 1.965784375 0.116653 108 32 SH6706 6706 snR49 snR49 56 73 27.794652 143.995516 85.895084 1.933968309 -0.115383 108 33 SH12258 12258 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 105.556647 383.304254 105.556647 278.747607 192.152127 2.283645196 0.058378 108 34 SH7208 7208 snR64 3' 31.913849 183.069847 107.491848 2.031375529 -0.064448 108 35 SH7297 7297 snR66 5' 58.375033 240.856505 149.615769 2.174977369 -0.188924 108 36 SH5858 5858 snR35 snR35 476 492 32.12686 153.431232 92.779046 1.967449903 0.136361 108 37 SH15045 15045 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.234417 239.822198 30.234417 210.587781 120.411099 2.08066652 -0.36551 108 38 SH21505 21505 copy of SH2797 34.483047 171.223712 102.8533795 2.012218566 0.141191 108 39 SH10434 10434 RUF8 RUF8 96 115 30.544937 150.950381 90.747659 1.95783543 0.044777 108 40 SH13659 13659 MT ATP6 ATP6 32.766051 196.758507 32.766051 164.992456 98.8792535 1.995105179 0.102183 108 41 SH19911 19911 YAL003W spliced 30.830438 178.714726 104.772582 2.020247647 -0.092814 108 42 SH16325 16325 YDR471W_4_1401759_1402553_INTRON_32_415 intron 41.365072 244.041299 41.365072 203.676227 122.5206495 2.08820929 -0.065127 108 43 SH4982 4982 snR10 5' 28.900095 143.297053 86.098574 1.934995959 -0.029454 108 44 SH3519 3519 Tyr1 3' flank 216.087714 392.697533 304.3926235 2.483434124 0.190718 108 45 SH16793 16793 YGL103W_7_310965_311925_INTRON_50_560 intron/exon 28.862699 156.841037 28.862699 128.978338 78.9205185 1.89718993 0.050678 108 46 SH20227 20227 YDR129C spliced 35.014614 227.008909 131.0117615 2.117310286 -0.413006 108 47 SH5177 5177 snR13 snR13 41 55 34.871322 168.422615 101.6469685 2.007094431 0.182438 108 48 SH9593 9593 RUF3 RUF3 351 366 34.705952 183.001878 108.853915 2.036844053 0.036651 108 49 SH14928 14928 MT tRNA Asn 5' 30.434251 171.246137 30.434251 141.811886 86.1230685 1.935119495 0.0876 108 50 SH3389 3389 Thr4 tRNA 31 47 38.468545 200.143142 119.3058435 2.076661716 -0.068706 108 51 SH3896 3896 RNaseP 3' 30.178661 151.84078 91.0097205 1.959087781 0.014977 108 52 SH8382 8382 snoRNA cluster 5 5' 44.301413 274.128255 44.301413 230.826842 137.5641275 2.138505198 -0.303082 108 53 SH14967 14967 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.02052 205.26153 30.02052 176.24101 103.130765 2.013388239 -0.128418 108 54 SH19023 19023 YOR182C_15_678792_678190_INTRON_4_414 intron 31.995281 183.953626 31.995281 152.958345 92.476813 1.966032854 0.130344 108 55 SH20271 20271 YDR447C spliced 44.095177 236.222933 140.159055 2.146621161 -0.357079 108 56 SH11326 11326 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3516 3533 36699.05173 31026.84904 33862.95038 4.529724794 -0.238976 108 57 SH6888 6888 snR56 snR56 71 88 31.928165 137.908176 84.9181705 1.929000629 0.209893 108 58 SH12444 12444 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 56.173965 277.477355 56.173965 222.30339 139.2386775 2.14375989 -0.051199 108 59 SH450 450 Asp1 71 + 3' flank 71 3' flank 33.913981 156.887851 95.400916 1.979552545 0.217729 108 60 SH1256 1256 Ile2 5' flank 31.880541 140.936946 86.4087435 1.93655769 0.189197 108 61 SH8864 8864 LSR1 / U2 RNA U2 961 976 33.868785 160.946093 97.407439 1.988592125 0.189289 108 62 SH10359 10359 RUF7 RUF7 406 423 31.82415 184.529367 108.1767585 2.034133964 -0.08122 108 63 SH15288 15288 MT 9S rRNA 9S 29.77398 187.80051 29.77398 159.02653 94.400255 1.974973167 -0.050498 108 64 SH13058 13058 MT COX1 COX1ai2 29.717993 164.07274 29.717993 135.354747 82.53637 1.916645364 0.073759 108 65 SH409 409 Asn1 3' flank 33.638678 170.722508 102.180593 2.009368419 0.116439 108 66 SH9922 9922 RUF5-1 RUF5-1 416 433 32.530515 177.868466 105.1994905 2.022013636 0.007117 108 67 SH4710 4710 snR4 snR4 86 104 31.40035 188.864827 110.1325885 2.041915847 -0.136467 108 68 SH14203 14203 MT COB 3' 31.235454 197.107279 31.235454 166.871825 99.0536395 1.995870437 0.001246 108 69 SH14288 14288 MT VAR1 includes 5’ processing site VAR1 31.042151 212.959814 31.042151 182.917663 106.979907 2.029302216 -0.103638 108 70 SH14939 14939 MT tRNA Asn 3' 30.826613 215.731367 30.826613 185.904754 108.3656835 2.034891775 -0.133121 108 71 SH6689 6689 snR49 5' 28.666967 158.882485 93.774726 1.972085804 -0.128396 108 72 SH3253 3253 Thr1 3' flank 30.368815 162.008807 96.188811 1.983124556 -0.024497 108 73 SH3849 3849 RNaseP RNaseP 211 225 37.772758 178.918301 108.3455295 2.034810996 0.164243 108 74 SH20574 20574 YHR012W spliced 28.054397 171.062071 99.558234 1.998077184 -0.233057 108 75 SH1993 1993 Lys3 5' flank 42.944936 197.145972 120.045454 2.079345718 0.031837 108 76 SH6756 6756 snR50 5' 31.466969 165.026577 98.246773 1.992318295 0.026348 108 77 SH12141 12141 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7591 7611 30.376003 172.859133 101.617568 2.006968797 -0.086727 108 78 SH2728 2728 Pro5 tRNA 21 36 87.052082 201.448203 144.2501425 2.159116251 0.512536 108 79 SH3505 3505 Tyr1 tRNA 66 78 55.019723 205.059942 130.0398325 2.114076401 0.106038 108 80 SH5188 5188 snR13 snR13 96 115 28.989185 157.817564 93.4033745 1.970362567 -0.099751 108 81 SH19682 19682 SIR1 2.4 30.635806 181.920722 106.278264 2.026444452 -0.122718 108 82 SH3144 3144 Ser4 3' flank 26.823429 143.852779 85.338104 1.93114299 -0.18952 108 83 SH19103 19103 YOR312C_15_901173_900242_INTRON_2_427 intron 32.040527 213.108317 32.040527 182.06779 107.0541585 2.029603542 -0.05044 108 84 SH101 101 Ala2 3' flank 30.056684 162.722588 96.389636 1.98403034 -0.049498 108 85 SH5972 5972 snR36 snR36 316 332 31.676074 144.133804 87.904939 1.944013277 0.157674 108 86 SH10873 10873 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1251 1264 40748.54578 28338.97627 34543.76102 4.538369621 0.040727 108 87 SH3042 3042 Ser3 5' flank 33.250386 170.469443 101.8599145 2.008003307 0.096435 108 88 SH12330 12330 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.472365 190.123645 31.472365 159.65128 95.5618225 1.980284424 0.060313 108 89 SH13813 13813 MT COB Cytbi2 31.520474 222.434817 31.520474 191.914343 111.7174085 2.048120853 -0.158922 108 90 SH16553 16553 YER133W_5_432491_433954_INTRON_178_702 intron 36.950416 214.380373 36.950416 178.429957 107.6901865 2.032176129 0.154413 108 91 SH1770 1770 Leu7 3' flank 67.579475 243.211625 155.39555 2.191438578 -0.086613 108 92 SH6512 6512 snR46 snR46 51 65 80.619507 239.349857 159.984682 2.204078402 0.099849 108 93 SH2076 2076 Lys4 tRNA-intron/exon 46 62 32.150696 194.667415 113.4090555 2.054647734 -0.159242 108 94 SH21817 21817 copy of SH15702 37.816861 177.732187 107.774524 2.032516113 0.179555 108 95 SH18771 18771 YNL246W_14_185459_186348_INTRON_33_127 intron/exon 30.746851 227.23857 30.746851 197.491719 114.119285 2.057359042 -0.237032 108 96 SH16371 16371 YER003C_5_159117_157735_INTRON_32_124 exon/intron 30.934213 193.535375 30.934213 163.601162 97.2676875 1.987968591 0.003241 108 97 SH3799 3799 RNaseP 5' flank 53.35621 211.256556 132.306383 2.121580797 0.019497 108 98 SH20554 20554 YHL001W spliced 310.890068 507.479207 409.1846375 2.61191932 0.178388 108 99 SH19272 19272 YPL143W_16_282121_282969_INTRON_20_544 intron 31.375113 180.224649 31.375113 149.849536 90.6123245 1.957187272 0.106358 108 100 SH16690 16690 YGL030W_7_439087_439634_INTRON_4_233 intron 29.608923 173.946593 29.608923 145.33767 87.4732965 1.941875494 0.010559 108 101 SH19066 19066 YOR293W_15_867094_867848_INTRON_53_489 intron 42.884692 266.453875 42.884692 224.569183 133.7269375 2.126218899 -0.263066 108 102 SH6873 6873 snR56 5' - 17 -4 17 39.225607 213.565165 126.395386 2.101731221 -0.205343 108 103 SH8216 8216 snoRNA cluster 3; snR51 218.623106 572.526526 218.623106 354.90342 286.763263 2.457523513 0.381608 108 104 SH5319 5319 snR30 snR30 446 463 31.815298 150.213957 91.0146275 1.959111196 0.133304 109 2 SH12840 12840 MT COX1 COX1ai1 31.315769 184.533354 31.315769 154.217585 92.766677 1.967392 0.079153 109 3 SH11604 11604 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4906 4924 3273.035805 1450.555097 2361.795451 3.373242282 1.480663 109 4 SH6270 6270 snR42 snR42 131 150 31.314331 139.194399 85.254365 1.930716624 0.162086 109 5 SH21032 21032 YMR125W spliced 966.025828 1447.767893 1206.896861 3.081670158 -0.114237 109 6 SH1978 1978 Lys2 3' flank 31.27659 192.449088 111.862839 2.048685837 -0.172922 109 7 SH5883 5883 snR35 3' 31.229953 146.147953 88.688953 1.947869528 0.116996 109 8 SH6913 6913 snR58 5' 31.160008 153.643522 92.401765 1.965680267 0.071826 109 9 SH7712 7712 snoRNA cluster1 snR77 43.655963 257.788946 43.655963 215.132983 129.394473 2.111915726 -0.155156 109 10 SH2049 2049 Lys4 5' flank 30.957083 155.506387 93.231735 1.969563766 0.048504 109 11 SH19027 19027 YOR182C_15_678792_678190_INTRON_4_414 intron 28.7607 161.712053 28.7607 133.951353 81.3560265 1.910389729 0.012921 109 12 SH18830 18830 YNL302C_14_62942_61957_INTRON_21_571 intron 31.756465 233.350129 31.756465 202.593664 117.1750645 2.068835201 -0.241368 109 13 SH19668 19668 SIR1 2.4 28.555627 146.897284 87.7264555 1.943130582 -0.074045 109 14 SH16188 16188 YDR367W_4_1212837_1213603_INTRON_31_131 intron/exon 28.479671 148.009982 28.479671 120.530311 74.504991 1.872185367 0.079345 109 15 SH10869 10869 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1231 1247 46.949617 188.701756 117.8256865 2.071239979 0.186003 109 16 SH12089 12089 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7331 7348 36.610488 204.326402 120.468445 2.080873305 -0.147071 109 17 SH7210 7210 snR64 3' 28.388207 153.781987 91.085097 1.959447325 -0.122242 109 18 SH2336 2336 Phe3 tRNA 6 22 312.778914 503.551628 408.165271 2.61083605 0.198738 109 19 SH7732 7732 snoRNA cluster1 intergenic 30.429413 203.24506 30.429413 173.815647 102.12253 2.009121566 -0.089049 109 20 SH11527 11527 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4521 4539 6898.848122 2692.291843 4795.569983 3.680840233 1.482552 109 21 SH9287 9287 RUF1 RUF1 11 27 28.324112 167.545966 97.935039 1.990938101 -0.196376 109 22 SH9636 9636 RUF4 5' 28.26385 155.327543 91.7956965 1.962822321 -0.139454 109 23 SH10839 10839 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1081 1099 403.359613 679.37258 541.3660965 2.733491054 0.00983 109 24 SH16069 16069 YDR005C_4_458099_456832_INTRON_7_86 intron 38.249498 208.998839 38.249498 171.749341 104.9994195 2.021186898 0.2602 109 25 SH15960 15960 YDL130W_4_229906_230527_INTRON_115_415 intron 30.021972 210.399735 30.021972 181.377763 105.6998675 2.024074443 -0.157517 109 26 SH7514 7514 snR79 5' 44.071303 213.037961 128.554632 2.109087729 -0.127121 109 27 SH6290 6290 snR42 snR42 231 248 29.845771 151.561096 90.7034335 1.957623727 -0.006549 109 28 SH15414 15414 YBL059W_2_110555_111205_INTRON_287_355 5' exon 29.778249 200.316391 29.778249 171.538142 100.6581955 2.002849141 -0.116086 109 29 SH14641 14641 MT 21S rRNA intronic 29.725892 180.445055 29.725892 151.719163 90.7225275 1.957715141 -0.015746 109 30 SH18722 18722 YNL130C_14_381156_379555_INTRON_30_470 3' exon 31.689828 228.076011 31.689828 197.386183 114.5380055 2.058949616 -0.199942 109 31 SH1534 1534 Leu3 3' flank 29.668839 182.158251 105.913545 2.024951504 -0.183999 109 32 SH16352 16352 YDR500C_4_1450856_1450201_INTRON_8_396 intron 45.698457 233.273235 45.698457 188.574778 117.1366175 2.068692679 0.170713 109 33 SH14591 14591 MT 21S rRNA Sce1 endonuc 27.69336 187.651368 27.69336 160.958008 94.325684 1.974629963 -0.210617 109 34 SH752 752 Gln4 tRNA 31 47 246.207155 704.076533 475.141844 2.676823279 -0.652639 109 35 SH17217 17217 YHR041C_8_189855_189122_INTRON_15_115 5' exon 41.910834 224.181735 41.910834 183.270901 112.5908675 2.051503165 0.183984 109 36 SH19845 19845 Negative Control 29.945249 169.54194 99.7435945 1.998885015 -0.093739 109 37 SH10033 10033 RUF6 RUF6 11 27 30.086391 146.837132 88.4617615 1.946755583 0.035766 109 38 SH2862 2862 Pro7 3' flank 40.449272 184.869635 112.6594535 2.05176764 0.141413 109 39 SH9659 9659 RUF4 RUF4 71 89 28.363058 159.989788 94.176423 1.973942191 -0.15614 109 40 SH2667 2667 Pro4 tRNA 1 13 1036.24545 1602.582921 1319.414186 3.120381149 -0.185038 109 41 SH3112 3112 Ser4 5' flank 28.635957 141.501897 85.068927 1.929770955 -0.038967 109 42 SH633 633 Gln2 5' flank 30.802137 143.092369 86.947253 1.939255866 0.105487 109 43 SH2281 2281 Phe2 tRNA 1 15 358.209829 500.102628 429.1562285 2.63261542 0.374082 109 44 SH2890 2890 Pro8 5' flank 28.775364 143.913542 86.344453 1.936234443 -0.041909 109 45 SH9874 9874 RUF5-1 RUF5-1 176 192 30.801726 137.343855 84.0727905 1.924655463 0.137825 109 46 SH16630 16630 YFL039C_6_54695_53260_INTRON_11_318 intron/exon 28.639424 166.118592 28.639424 138.479168 83.559296 1.921994772 -0.021885 109 47 SH1466 1466 Leu2 101-114 + 3' flank 101 36.769095 165.435453 101.102274 2.004760924 0.276117 109 48 SH15268 15268 MT 9S rRNA 9S 30.443902 217.151661 30.443902 187.707759 109.0758305 2.037728528 -0.166281 109 49 SH8962 8962 snR17a / U3a U3a 96 112 32.348551 167.249108 99.7988295 1.999125448 0.064409 109 50 SH15049 15049 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.183449 193.116776 30.183449 163.933327 97.058388 1.987033074 -0.046769 109 51 SH2665 2665 Pro4 5' flank - tRNA5 5 70.808023 240.93803 155.8730265 2.192770968 -0.027701 109 52 SH5093 5093 snR11 snR11 66 82 38.102178 139.864364 88.983271 1.949308366 0.552104 109 53 SH15407 15407 YBL059C-A_2_110500_110086_INTRON_35_119 exon/intron 29.956162 164.634907 29.956162 135.678745 82.8174535 1.918121873 0.088707 109 54 SH933 933 Gly1 5' flank 27.908842 125.696303 76.8025725 1.885375767 0.002923 109 55 SH4804 4804 snR5 191-204 + 3' 191 31.918714 164.99649 98.457602 1.993249254 0.05318 109 56 SH2283 2283 Phe2 tRNA 11 25 404.011505 591.064494 497.5379995 2.696826256 0.242205 109 57 SH20208 20208 YDR059C spliced 31.897462 175.269414 103.583438 2.015290321 -0.009432 109 58 SH13722 13722 MT COB 5' 27.865724 154.818029 27.865724 127.952305 77.9090145 1.891587711 -0.014999 109 59 SH13146 13146 MT COX1 intronic 29.87045 171.926019 29.87045 143.055569 86.4630095 1.936830348 0.041413 109 60 SH534 534 Cys1 5' flank 35.900999 180.266154 108.0835765 2.033759707 0.102622 109 61 SH21292 21292 YPL175W spliced 31.858203 191.712512 111.7853575 2.04838492 -0.144379 109 62 SH8265 8265 snoRNA cluster4 snR67 33.844379 213.519932 33.844379 180.675553 107.259966 2.030437655 0.028125 109 63 SH21533 21533 copy of SH3753 68.089661 199.219422 133.6545415 2.12598372 0.329471 109 64 SH2575 2575 Pro2 3' flank 29.731832 157.428562 93.580197 1.971183955 -0.045256 109 65 SH11106 11106 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2416 2429 27.65555 138.513586 83.084568 1.919520366 -0.095702 109 66 SH911 911 Glu3 66-72 + 3' flank 66 29.543697 143.185691 86.364694 1.936336239 0.017539 109 67 SH2687 2687 Pro4 101-102 + 3' flank 101 29.404838 147.051804 88.228321 1.945608015 -0.013145 109 68 SH6854 6854 snR56 5' 29.236389 158.944918 94.0906535 1.973546485 -0.087895 109 69 SH4481 4481 U3b (snR17b) 5' 27.087866 123.488702 75.288284 1.876727399 -0.043798 109 70 SH5000 5000 snR10 snR10 31 47 30.776789 168.269795 99.523292 1.997924733 -0.034884 109 71 SH8437 8437 snoRNA cluster 5 intergenic/snR128 30.548433 205.985152 30.548433 176.436719 103.492576 2.014909197 -0.096958 109 72 SH2932 2932 Pro8 3' flank 84.275592 269.404216 176.839904 2.24758027 -0.09218 109 73 SH10737 10737 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 571 586 48.241949 167.140746 107.6913475 2.032180811 0.478953 109 74 SH13009 13009 MT COX1 COX1ai2 29.94338 180.38571 29.94338 151.44233 90.692855 1.957573074 0.000862 109 75 SH11834 11834 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6056 6069 6320.794126 6812.614549 6566.704338 3.817347463 -0.106504 109 76 SH16204 16204 YDR381C-A_4_1238839_1238301_INTRON_27_220 3' exon 29.651996 174.12134 29.651996 145.469344 87.56067 1.942309076 0.012915 109 77 SH10056 10056 RUF6 RUF6 126 143 27.664037 164.104377 95.884207 1.981747081 -0.228498 109 78 SH16795 16795 YGL103W_7_310965_311925_INTRON_50_560 3' exon 3064.299919 6840.572209 3064.299919 3777.27229 3420.786105 3.534125919 -0.109838 109 79 SH11747 11747 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5621 5638 4200.729912 2356.548203 3278.639058 3.515693608 1.047307 109 80 SH5534 5534 snR33 5' 32.8138 149.848277 91.3310385 1.960618396 0.199409 109 81 SH598 598 Gln1 tRNA 31 47 30.798555 194.676921 112.737738 2.052069317 -0.210795 109 82 SH12274 12274 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.790446 220.806831 28.790446 193.016385 110.9034155 2.044944921 -0.299007 109 83 SH16101 16101 YDR059C_4_569765_569229_INTRON_48_137 intron 26.800876 138.35232 26.800876 112.551444 69.67616 1.843084208 0.011715 109 84 SH2182 2182 Met2 tRNA 41 55 30.22795 152.636456 91.432203 1.961099184 0.014129 109 85 SH12664 12664 MT_15S MT_15S 134.563694 385.191105 134.563694 251.627411 193.0955525 2.285772271 0.492945 109 86 SH20139 20139 YDL108W spliced 51.365689 203.963875 127.664782 2.106071108 0.07057 109 87 SH21035 21035 YMR125W spliced 94.111615 256.603304 175.3574595 2.243924245 0.106765 109 88 SH20359 20359 YER131W spliced 54.77105 231.45851 143.11478 2.155684487 -0.156214 109 89 SH12034 12034 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7056 7085 29.880509 121.834727 75.857618 1.879999201 0.169175 109 90 SH9100 9100 snR14 / U4 RNA U4 116 135 28.178094 140.023972 84.101033 1.92480133 -0.064732 109 91 SH18242 18242 YML026C_13_223828_222987_INTRON_48_448 intron/exon 30.072252 183.085038 30.072252 154.012786 92.042519 1.963988496 -0.00386 109 92 SH13845 13845 MT COB Cytbi2 30.213458 163.626146 30.213458 134.412688 82.313073 1.915468816 0.114025 109 93 SH20475 20475 YGL189C spliced 33.982998 164.0755 99.029249 1.995763486 0.176017 109 94 SH5860 5860 snR35 snR35 486 501 33.259604 154.19994 93.729772 1.971877561 0.198864 109 95 SH5929 5929 snR36 snR36 101 117 30.700853 165.808471 98.254662 1.992353166 -0.024531 109 96 SH16757 16757 YGL087C_7_346902_346404_INTRON_12_96 5' exon 29.024937 206.952051 29.024937 178.927114 103.9760255 2.016933212 -0.206833 109 97 SH18266 18266 YML056C_13_164176_162194_INTRON_461_868 intron 32.848887 225.08896 32.848887 193.240073 113.04448 2.05324936 -0.121087 109 98 SH8846 8846 LSR1 / U2 RNA U2 871 887 32.066894 176.772031 104.4194625 2.018781453 -0.008202 109 99 SH2885 2885 Pro8 5' flank 27.54935 145.877078 86.713214 1.938085284 -0.14417 109 100 SH2938 2938 Ser1 5' flank 27.650627 157.376034 92.5133305 1.966204316 -0.19559 109 101 SH16948 16948 YGR027C_7_534779_534126_INTRON_1_312 intron 29.620358 183.280114 29.620358 154.659756 92.140057 1.964448477 -0.038678 109 102 SH2270 2270 Phe2 5' flank 30.66268 158.394531 94.5286055 1.975563251 0.013766 109 103 SH5843 5843 snR35 snR35 401 420 29.81818 147.469905 88.6440425 1.947649553 0.013699 109 104 SH8083 8083 snoRNA cluster 2 3' 29.912777 164.938411 29.912777 136.025634 82.9692055 1.918916931 0.083665 110 2 SH12030 12030 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS/3'flank 7036 7056 30.198509 155.29186 92.7451845 1.96729137 -0.001865 110 3 SH12905 12905 MT COX1 COX1ai2 31.255878 186.790905 31.255878 156.535027 93.8954525 1.972644559 0.063097 110 4 SH9655 9655 RUF4 RUF4 51 65 46.085274 208.55703 127.321152 2.104900559 -0.050897 110 5 SH14783 14783 MT ORF11; tRNA Leu; tRNA Gln 3' 29.119225 172.535621 29.119225 144.416396 86.7678105 1.938358639 -0.019609 110 6 SH429 429 Asp1 5' flank 29.089053 162.242803 95.665928 1.980757289 -0.115017 110 7 SH15685 15685 YBR191W_2_606228_607098_INTRON_12_399 intron 168.29675 477.248881 168.29675 309.952131 239.1244405 2.378623967 0.337421 110 8 SH20365 20365 YER133W spliced 33.160721 224.397503 128.779112 2.109845426 -0.42116 110 9 SH5360 5360 snR30 3' 30.973433 182.065253 106.519343 2.027428479 -0.103036 110 10 SH4880 4880 snR8 181-190 + 3' 181 28.790681 143.512909 86.151795 1.935264331 -0.038616 110 11 SH14393 14393 MT 21S rRNA 21S rRNA3 138.573689 513.455066 138.573689 375.881377 257.227533 2.410317453 -0.220591 110 12 SH355 355 Arg5 3' flank 32.738746 168.128712 100.433729 2.001879588 0.081493 110 13 SH10134 10134 RUF6 RUF6 516 530 30.594731 173.484604 102.0396675 2.008769035 -0.076984 110 14 SH17013 17013 YGR148C_7_788173_787307_INTRON_1_392 intron 28.484406 204.425766 28.484406 176.94136 102.712883 2.011624919 -0.230636 110 15 SH13906 13906 MT COB exon3/cytbi3 30.511623 197.431226 30.511623 167.919603 99.215613 1.99658002 -0.048944 110 16 SH4694 4694 snR4 snR4 6 22 163.849178 340.444609 252.1468935 2.401653622 0.138782 110 17 SH14613 14613 MT 21S rRNA Sce1 endonuc 31.529226 197.72126 31.529226 167.192034 99.36063 1.997214337 0.016798 110 18 SH14749 14749 MT ORF11; tRNA Leu; tRNA Gln ORF11 81.146353 310.925811 81.146353 230.779458 155.9629055 2.193021317 0.178522 110 19 SH12987 12987 MT COX1 COX1ai2 28.442269 177.691202 28.442269 150.248933 89.345601 1.951073175 -0.100004 110 20 SH21192 21192 YOL120C spliced 30.470143 157.794135 94.132139 1.973737927 0.00377 110 21 SH9868 9868 RUF5-1 RUF5-1 146 163 30.420559 149.299625 89.860092 1.953566859 0.045217 110 22 SH6892 6892 snR56 3' 28.30272 153.656821 90.9797705 1.958944837 -0.127842 110 23 SH21914 21914 copy of SH19997 142.332419 291.12859 216.7305045 2.335920042 0.277659 110 24 SH17696 17696 YKL006W_11_431544_432358_INTRON_130_527 intron 28.113391 171.977742 28.113391 144.864351 86.488871 1.936960228 -0.096057 110 25 SH15368 15368 YBL027W_2_168385_169338_INTRON_3_386 intron 34.07983 216.545803 34.07983 183.465973 108.7729015 2.036520713 0.010568 110 26 SH16782 16782 YGL103W_7_310965_311925_INTRON_50_560 intron 32.946996 207.32153 32.946996 175.374534 104.160765 2.017704161 0.046184 110 27 SH5573 5573 snR33 snR33 151 170 37.867547 184.918794 111.3931705 2.046858565 0.094172 110 28 SH16728 16728 YGL033W_7_435621_436347_INTRON_56_125 3' exon 29.73183 201.514044 29.73183 172.782214 101.257022 2.005425151 -0.126344 110 29 SH3275 3275 Thr2 5' flank 29.654966 190.307941 109.9814535 2.041319455 -0.229341 110 30 SH11916 11916 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6466 6481 157.042764 290.483772 223.763268 2.349788796 0.383512 110 31 SH16601 16601 YFL034C-A_6_64931_64242_INTRON_13_333 3' exon 29.547203 216.466423 29.547203 187.91922 108.7332115 2.036362215 -0.223313 110 32 SH19912 19912 YAL003W spliced 27.536071 172.124096 99.8300835 1.999261434 -0.276772 110 33 SH17461 17461 YIL148W_9_68708_69528_INTRON_9_442 intron 27.541257 203.481381 27.541257 176.940124 102.2406905 2.009623774 -0.298736 110 34 SH12560 12560 MT_15S MT_15S 998.768725 2561.661741 998.768725 1563.893016 1281.330871 3.10766129 -0.194 110 35 SH18788 18788 YNL301C_14_64561_63569_INTRON_113_544 intron 27.648169 148.687219 27.648169 122.03905 74.8436095 1.874154724 0.008095 110 36 SH8555 8555 snR19 / U1 RNA U1 271 287 35.775578 151.966518 93.871048 1.972531666 0.350007 110 37 SH7598 7598 snR189 snR189 61 75 50.09754 189.376788 119.737164 2.078228968 0.21921 110 38 SH19313 19313 YPL198W_16_173151_174701_INTRON_12_420 intron 28.034995 181.774582 28.034995 154.739587 91.387291 1.960885804 -0.15333 110 39 SH720 720 Gln3 3' flank 32.2663 152.036321 92.1513105 1.964501516 0.152747 110 40 SH18457 18457 YMR143W_13_551927_552902_INTRON_25_568 intron 36.539273 228.043502 36.539273 192.504229 114.521751 2.05888798 -0.018644 110 41 SH10682 10682 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 296 311 55.294245 221.788797 138.541521 2.141579951 -0.058249 110 42 SH15985 15985 YDL136W_4_217600_218367_INTRON_4_408 intron 28.565786 174.018579 28.565786 146.452793 87.5092895 1.942054158 -0.070935 110 43 SH8968 8968 snR17a / U3a U3a 126 145 30.680531 145.518146 88.0993385 1.944972647 0.083659 110 44 SH2091 2091 Lys4 3' flank 32.748349 205.634601 119.191475 2.076245194 -0.239843 110 45 SH19867 19867 Negative Control 32.696079 206.128576 119.4123275 2.077049163 -0.246199 110 46 SH20438 20438 YGL087C spliced 30.543005 199.318334 114.9306695 2.060435937 -0.260536 110 47 SH17758 17758 YKL157W_11_154993_158183_INTRON_282_664 intron 28.379347 171.494177 28.379347 144.11483 86.2470885 1.935744443 -0.072184 110 48 SH9658 9658 RUF4 RUF4 66 80 42.574423 162.886537 102.73048 2.011699317 0.453356 110 49 SH1515 1515 Leu3 tRNA-intron 46 62 30.183945 169.75586 99.9699025 1.999869269 -0.080178 110 50 SH14262 14262 MT VAR1 includes 5’ processing site 5' 32.106909 266.230743 32.106909 235.123834 133.6153715 2.125856424 -0.545702 110 51 SH13206 13206 MT COX1 COX1-ai4 32.019946 204.646449 32.019946 173.626503 102.8232245 2.012091219 0.007301 110 52 SH5667 5667 snR34 snR34 256 273 33.976712 183.532205 108.7544585 2.03644707 0.006329 110 53 SH21302 21302 YPL218W spliced 31.918385 154.019982 92.9691835 1.968339017 0.119748 110 54 SH7159 7159 snR63 3' 31.895011 199.604259 115.749635 2.06351963 -0.211068 110 55 SH19811 19811 Negative Control 31.881991 172.196547 102.039269 2.008767339 0.007632 110 56 SH12585 12585 MT_15S MT_15S 27.85196 147.668323 27.85196 120.816363 74.3341615 1.871188447 0.031544 110 57 SH6939 6939 snR58 snR58 56 68 33.88243 161.485696 97.684063 1.989823715 0.186641 110 58 SH8613 8613 snR19 / U1 RNA U1 561 577 30.859639 148.573321 89.71648 1.952872226 0.078908 110 59 SH17707 17707 YKL081W_11_282533_284097_INTRON_206_531 intron 63.164463 279.262451 63.164463 217.097988 140.1312255 2.14653492 0.090348 110 60 SH1271 1271 Ile2 tRNA-intron 51 66 31.854842 147.907454 89.881148 1.953668611 0.148417 110 61 SH19342 19342 YPL241C_16_96258_95372_INTRON_26_105 3' exon 29.832684 210.44862 29.832684 181.615936 105.72431 2.024174859 -0.170674 110 62 SH2094 2094 Lys4 3' flank 31.819299 128.390129 80.104714 1.903658074 0.258814 110 63 SH10119 10119 RUF6 RUF6 441 457 33.785695 189.23673 111.5112125 2.047318538 -0.052076 110 64 SH3653 3653 Val2 tRNA 6 18 39.732854 166.120954 102.926904 2.01252891 0.361664 110 65 SH463 463 Asp1 3' flank 33.615833 185.978832 109.7973325 2.040591789 -0.02881 110 66 SH13825 13825 MT COB Cytbi2 49.428791 284.332993 49.428791 235.904202 142.6664965 2.154321996 -0.27455 110 67 SH8111 8111 snoRNA cluster 3; 5' 31.326892 179.559288 31.326892 149.232396 90.279644 1.955589838 0.106509 110 68 SH9634 9634 RUF4 5' 39.005375 189.664438 114.3349065 2.058178841 0.05993 110 69 SH12404 12404 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 42.649413 211.567124 42.649413 169.917711 106.283562 2.026466101 0.362562 110 70 SH4240 4240 telomerase RNA telomerase 236 250 34.567652 166.980758 100.774205 2.003349381 0.186469 110 71 SH11565 11565 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4711 4726 1492.371593 878.80796 1185.589777 3.073934446 1.243234 110 72 SH7060 7060 snR62 91-100 + 3' 91 28.348365 145.759701 87.054033 1.939788896 -0.083329 110 73 SH18214 18214 YML025C_13_225365_224406_INTRON_28_126 intron 30.07629 167.462476 30.07629 138.386186 84.231238 1.925473184 0.081738 110 74 SH1050 1050 Gly3 5' flank - tRNA3 3 29.923599 185.145261 107.53443 2.031547537 -0.18454 110 75 SH2334 2334 Phe3 5' flank - tRNA13 13 96.962358 229.08454 163.023449 2.212250077 0.355324 110 76 SH19154 19154 YPL075W_16_412249_415357_INTRON_9_759 intron 33.446882 208.045584 33.446882 175.598702 104.522792 2.019211002 0.062068 110 77 SH17532 17532 YJL177W_10_90783_91654_INTRON_310_626 exon/intron 27.730475 178.212443 27.730475 151.481968 89.6062215 1.952338164 -0.15975 110 78 SH4129 4129 SRP RNA SRP RNA 536 548 250.189105 445.854879 348.021992 2.541606688 0.139148 110 79 SH7354 7354 snR68 5' - 10 -9 10 27.539539 116.725358 72.1324485 1.858130674 0.037048 110 80 SH234 234 Arg3 26-40 26 40 32.968718 174.065595 103.5171565 2.015012334 0.059321 110 81 SH17351 17351 YIL018W_9_316766_317930_INTRON_5_404 intron 30.961088 184.746241 30.961088 154.785153 92.8731205 1.967890038 0.052538 110 82 SH12246 12246 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.785307 197.580078 30.785307 167.794771 99.290039 1.996905681 -0.031495 110 83 SH19982 19982 YBL091C-A spliced 32.420412 172.577586 102.498999 2.010719624 0.036692 110 84 SH11350 11350 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3636 3651 497.089492 406.347226 451.718359 2.654867742 1.118872 110 85 SH920 920 Glu3 3' flank 30.263797 155.56687 92.9153335 1.96808739 0.001184 110 86 SH4061 4061 SRP RNA SRP RNA 196 213 86.03904 261.964958 174.001999 2.240554238 -0.01814 110 87 SH21068 21068 YMR225C spliced 30.064168 151.040267 90.5522175 1.95689909 0.01137 110 88 SH7227 7227 snR65 5' 197.218619 367.530463 282.374541 2.450825538 0.204788 110 89 SH21233 21233 YOR293W spliced 30.052546 172.12095 101.086748 2.004694225 -0.102392 110 90 SH13463 13463 MT COX1 intronic 33.689538 196.623802 33.689538 163.934264 98.811901 1.994809255 0.160679 110 91 SH18341 18341 YML124C_13_23684_22049_INTRON_26_323 intron 31.989502 188.125773 31.989502 157.136271 94.5628865 1.97572072 0.106913 110 92 SH1538 1538 Leu3 3' flank 33.903975 188.282048 111.0930115 2.04568674 -0.039355 110 93 SH21923 21923 copy of SH20203 355.527337 490.593177 423.060257 2.626402229 0.397208 110 94 SH8641 8641 snR19 / U1 RNA 3' 30.541807 147.310189 88.925998 1.949028748 0.064339 110 95 SH11538 11538 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4576 4589 1786.570306 1084.737614 1435.65396 3.157049773 1.141777 110 96 SH15665 15665 YBR189W_2_604466_605466_INTRON_8_420 intron 27.133025 142.00809 27.133025 115.875065 71.504045 1.854330611 0.012664 110 97 SH1533 1533 Leu3 3' flank 32.751893 180.839747 106.79582 2.028554255 -0.012714 110 98 SH5146 5146 snR11 3' 30.114768 155.925798 93.020283 1.968577656 -0.010928 110 99 SH16969 16969 YGR034W_7_555923_556666_INTRON_20_496 intron 29.309464 190.022703 29.309464 161.713239 95.5113515 1.98005499 -0.096703 110 100 SH4097 4097 SRP RNA SRP RNA 376 390 35.01735 168.04628 101.531815 2.00660215 0.191219 110 101 SH20615 20615 YHR097C spliced 48.316446 214.973687 131.6450665 2.119404588 -0.087053 110 102 SH20818 20818 YKL190W spliced 31.554925 199.743932 115.6494285 2.063143491 -0.22509 110 103 SH7641 7641 snoRNA cluster1 5' 1 20 31.689787 192.477546 112.0836665 2.049542329 -0.157449 110 104 SH18090 18090 YLR367W_12_855877_857316_INTRON_698_1180 5' exon 29.917685 179.635088 29.917685 150.717403 90.317544 1.955772119 0.002968 111 2 SH16372 16372 YER003C_5_159117_157735_INTRON_32_124 intron 29.099021 166.124957 29.099021 138.025936 83.5624785 1.922011313 0.0142 111 3 SH19587 19587 AEP2/ATP13 2.1 31.209252 176.520997 103.8651245 2.016469746 -0.057436 111 4 SH17156 17156 YHR012W_8_129473_130440_INTRON_49_167 3' exon 33.304473 222.253543 33.304473 189.94907 111.6267715 2.047768364 -0.075601 111 5 SH11968 11968 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6726 6743 41534.08389 28656.23376 35095.15883 4.545247212 0.047844 111 6 SH13097 13097 MT COX1 COX1ai3 33.226927 214.287644 33.226927 182.060717 107.643822 2.031989109 -0.006819 111 7 SH4852 4852 snR8 snR8 41 57 33.161801 165.44008 99.3009405 1.996953362 0.121874 111 8 SH18177 18177 YLR448W_12_1028848_1029762_INTRON_16_399 intron 33.078211 198.562198 33.078211 166.483987 99.781099 1.999048283 0.110765 111 9 SH11105 11105 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2411 2426 38.195468 185.072267 111.6338675 2.047795971 0.098466 111 10 SH3395 3395 Thr4 61-72 + 3' flank 61 137.706017 328.396414 233.0512155 2.367451372 0.020478 111 11 SH21705 21705 copy of SH11080 12069.59738 9946.393833 11007.99561 4.041708248 0.128238 111 12 SH12227 12227 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 85.692691 268.874608 85.692691 184.181917 134.937304 2.130132029 0.680947 111 13 SH10971 10971 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1741 1759 556.137732 1079.585138 817.861435 2.91267973 -0.34605 111 14 SH13678 13678 MT ORF 5 (hypothetical) 5' 28.4964 180.457602 28.4964 152.961202 90.728801 1.957745172 -0.110013 111 15 SH18175 18175 YLR448W_12_1028848_1029762_INTRON_16_399 intron 30.545184 196.674256 30.545184 167.129072 98.837128 1.994920117 -0.042094 111 16 SH19009 19009 YOR182C_15_678792_678190_INTRON_4_414 intron 30.549221 191.663854 30.549221 162.114633 96.331927 1.983770248 -0.012734 111 17 SH5904 5904 snR36 5' 28.499139 183.989175 106.244157 2.026305055 -0.269353 111 18 SH1 1 Ala1 5' flank 32.617667 166.965998 99.7918325 1.999094998 0.081618 111 19 SH5766 5766 snR35 snR35 16 32 32.603175 168.564868 100.5840215 2.002528995 0.071104 111 20 SH8807 8807 LSR1 / U2 RNA U2 676 692 32.565813 145.584051 89.074932 1.949755499 0.207053 111 21 SH14443 14443 MT 21S rRNA 21S rRNA3 30.450345 201.772567 30.450345 172.322222 101.3862835 2.005979203 -0.078997 111 22 SH15473 15473 YBL091C-A_2_46858_46559_INTRON_35_122 5' exon 89.168284 345.840535 89.168284 257.672251 173.4202675 2.239099852 0.047371 111 23 SH12103 12103 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7401 7418 34.345514 180.698906 107.52221 2.031498182 0.045515 111 24 SH12319 12319 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.150296 206.96241 30.150296 177.812114 103.981205 2.016954846 -0.129372 111 25 SH21668 21668 copy of SH9403 32.053697 165.172069 98.612883 1.993933656 0.059988 111 26 SH10786 10786 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 816 836 124.771256 313.963446 219.367351 2.341171991 0.001945 111 27 SH10544 10544 RUF8 RUF8 646 666 27.787356 148.582607 88.1849815 1.945394628 -0.140374 111 28 SH5988 5988 snR36 3' 29.683719 176.793262 103.2384905 2.013841646 -0.152688 111 29 SH3828 3828 RNaseP RNaseP 106 118 73.663689 233.419848 153.5417685 2.186226539 0.070457 111 30 SH19460 19460 CYC1 27.505594 151.589307 89.5474505 1.952053226 -0.177452 111 31 SH5492 5492 snR32 snR32 121 133 43.320991 191.290956 117.3059735 2.069320128 0.105967 111 32 SH6881 6881 snR56 snR56 36 53 27.390436 145.952517 86.6714765 1.937876195 -0.156757 111 33 SH19863 19863 Negative Control 39.252345 186.665057 112.958701 2.052919689 0.099113 111 34 SH5654 5654 snR34 snR34 191 212 27.391456 146.313751 86.8526035 1.938782841 -0.158605 111 35 SH16844 16844 YGL178W_7_167356_170575_INTRON_4_643 intron 29.43039 196.064697 29.43039 167.634307 98.5323485 1.993578834 -0.117289 111 36 SH7236 7236 snR65 5' 69.528258 233.570061 151.5491595 2.180553532 0.019842 111 37 SH2420 2420 Phe4 3' flank 29.668435 170.68366 100.1760475 2.000763892 -0.117919 111 38 SH10548 10548 RUF8 RUF8 666 687 25.812842 124.308172 75.060507 1.875411494 -0.14827 111 39 SH16343 16343 YDR500C_4_1450856_1450201_INTRON_8_396 intron 29.999915 198.218967 29.999915 169.219052 99.6094835 1.998300688 -0.088393 111 40 SH12428 12428 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.164119 170.397824 30.164119 141.233705 85.698912 1.932975308 0.072007 111 41 SH7606 7606 snR189 snR189 101 118 28.264171 124.717937 76.491054 1.883610645 0.035419 111 42 SH11589 11589 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4831 4846 290.196409 468.341173 379.268791 2.578947107 0.230815 111 43 SH4359 4359 telomerase RNA telomerase 831 847 30.466384 162.761028 96.613706 1.985038742 -0.021592 111 44 SH18400 18400 YMR125W_13_517538_520445_INTRON_26_347 intron 32.527742 253.892194 32.527742 222.364452 127.446097 2.10532654 -0.414974 111 45 SH8831 8831 LSR1 / U2 RNA U2 796 813 32.486611 186.519974 109.5032925 2.039427178 -0.074645 111 46 SH9595 9595 RUF3 RUF3 361 382 30.360869 134.644562 82.5027155 1.916468243 0.122932 111 47 SH10128 10128 RUF6 RUF6 486 502 111.086963 271.335528 191.2112455 2.28151343 0.159612 111 48 SH14765 14765 MT ORF11; tRNA Leu; tRNA Gln ORF11 28.129993 170.684257 28.129993 143.554264 85.8421285 1.933700478 -0.087734 111 49 SH13505 13505 MT COX1 intronic 38.175372 230.536964 38.175372 193.361592 115.768482 2.063590339 0.002667 111 50 SH6865 6865 snR56 5' 39.084897 161.505476 100.2951865 2.00128009 0.389855 111 51 SH20358 20358 YER117W spliced 31.939657 156.657625 94.298641 1.974505434 0.107097 111 52 SH9674 9674 RUF4 RUF4 146 161 33.911712 199.644024 116.777868 2.067360542 -0.150756 111 53 SH13712 13712 MT tRNAGlu (and 5' processing site for COB) 3' 29.8601 200.987569 29.8601 172.127469 100.9937845 2.004294647 -0.114439 111 54 SH12818 12818 MT COX1 COX1ai1 29.847711 196.180806 29.847711 167.333095 98.590403 1.993834642 -0.086611 111 55 SH15316 15316 YAL003W_1_142172_143158_INTRON_81_446 intron 43.939397 280.887411 43.939397 237.948014 140.9437055 2.149045685 -0.375504 111 56 SH14668 14668 MT 21S rRNA 21S rRNA4 30.842111 193.427267 30.842111 163.585156 97.2136335 1.987727176 -0.002234 111 57 SH15704 15704 YBR220C_2_663261_662457_INTRON_302_722 intron 29.833627 187.994979 29.833627 159.161352 94.4974895 1.975420271 -0.047031 111 58 SH6380 6380 snR43 snR43 141 159 29.829956 145.339739 87.5848475 1.942428978 0.026211 111 59 SH1807 1807 Leu8 tRNA 61 77 51.988884 182.589339 117.2891115 2.069257696 0.324879 111 60 SH21835 21835 copy of SH16600 31.826967 177.034662 104.4308145 2.018828665 -0.02375 111 61 SH18724 18724 YNL147W_14_350937_351380_INTRON_19_138 5' exon 31.812066 230.827365 31.812066 200.015299 115.9136825 2.064134703 -0.217659 111 62 SH7794 7794 snoRNA cluster1 snR75 31.78411 184.024893 31.78411 153.240783 92.5124465 1.966200166 0.115107 111 63 SH16708 16708 YGL031C_7_438393_437938_INTRON_1_456 intron 33.740387 214.607375 33.740387 181.866988 107.8036875 2.032633616 0.013348 111 64 SH1926 1926 Lys1 3' flank 31.660666 186.157385 108.9090255 2.037063872 -0.102212 111 65 SH9288 9288 RUF1 RUF1 16 33 29.560951 149.773597 89.667274 1.952633967 -0.016838 111 66 SH12962 12962 MT COX1 COX1ai2 31.408769 243.465962 31.408769 213.057193 122.232981 2.087188403 -0.346619 111 67 SH547 547 Cys1 tRNA 36 52 35.177067 174.850942 105.0140045 2.02124722 0.129688 111 68 SH10300 10300 RUF7 RUF7 111 130 29.066414 158.132413 93.5994135 1.971273127 -0.095844 111 69 SH5141 5141 snR11 3' 30.801549 182.055999 106.428774 2.027059059 -0.113387 111 70 SH20453 20453 YGL137W spliced 28.645498 162.607073 95.6262855 1.980577286 -0.148722 111 71 SH12481 12481 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S/3' flank 26.529797 131.699186 26.529797 106.169389 66.349593 1.821838263 0.039738 111 72 SH20078 20078 YCR031C spliced 28.267681 133.440474 80.8540775 1.907701926 -0.02035 111 73 SH21530 21530 copy of SH3750 28.120851 191.050403 109.585627 2.039753597 -0.332596 111 74 SH5728 5728 snR34 3' 84.982373 223.611244 154.2968085 2.188356943 0.282536 111 75 SH21736 21736 copy of SH12341 31.681935 173.432989 102.557462 2.010967265 -0.011405 111 76 SH4234 4234 telomerase RNA telomerase 206 222 27.848772 112.580414 70.214593 1.846427383 0.090137 111 77 SH7044 7044 snR62 snR62 11 32 27.78631 131.775829 79.7810695 1.901899854 -0.045271 111 78 SH11579 11579 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4781 4798 52.085057 204.892168 128.4886125 2.108864639 0.070152 111 79 SH14881 14881 MT tRNA Ala tRNA 31.365151 219.710582 31.365151 189.345431 110.355291 2.04279316 -0.142099 111 80 SH21856 21856 copy of SH17801 27.537805 164.923317 96.230561 1.983313018 -0.242022 111 81 SH15711 15711 YBR220C_2_663261_662457_INTRON_302_722 intron 193.233944 538.927674 193.233944 346.69373 269.963837 2.431305592 0.285773 111 82 SH12379 12379 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.796328 181.590489 32.796328 149.794161 91.2952445 1.960448156 0.198596 111 83 SH4649 4649 snR3 snR3 161 176 34.450912 212.060524 123.255718 2.090807076 -0.271001 111 84 SH20766 20766 YJR145C spliced 32.445343 197.272233 114.858788 2.060164229 -0.170743 111 85 SH594 594 Gln1 tRNA 11 28 30.478602 153.335747 91.9071745 1.963349415 0.027564 111 86 SH5583 5583 snR33 3' 30.363882 152.274851 91.3193665 1.96056289 0.025362 111 87 SH347 347 Arg5 71-72 + 3' flank 71 3' flank 30.288207 124.945125 77.616666 1.889954984 0.176155 111 88 SH4520 4520 U3b (snR17b) U3b 156 172 79.084936 233.152843 156.1188895 2.193455453 0.135265 111 89 SH2686 2686 Pro4 96-102 + 3' flank 96 32.055547 141.362043 86.708795 1.938063151 0.198118 111 90 SH14369 14369 MT ORF9 and ORF10 (hypothetical) intergenic 26.69174 155.724672 26.69174 130.032932 78.362336 1.894107374 -0.116891 111 91 SH7679 7679 snoRNA cluster1 intergenic 46.61153 267.006242 46.61153 221.394712 134.003121 2.127114913 -0.176438 111 92 SH3811 3811 RNaseP RNaseP 21 38 32.218663 180.758563 106.488613 2.02730317 -0.031621 111 93 SH19749 19749 Negative Control 34.110473 183.440648 108.7755605 2.03653133 0.011877 111 94 SH17199 17199 YHR021C_8_148660_147862_INTRON_4_553 intron 28.748463 157.671259 28.748463 129.922796 79.3356295 1.899468272 0.036476 111 95 SH8538 8538 snR19 / U1 RNA U1 186 206 27.00765 140.78555 83.8966 1.923744361 -0.158309 111 96 SH6021 6021 snR37 snR37 21 43 28.912354 153.378312 91.145333 1.959734436 -0.082145 111 97 SH2731 2731 Pro5 tRNA-exon/intron 36 48 32.672532 158.443232 95.557882 1.980266515 0.137992 111 98 SH7701 7701 snoRNA cluster1 intergenic 29.111641 173.173385 29.111641 145.061744 87.0866925 1.939951797 -0.023632 111 99 SH11072 11072 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2246 2264 42.186899 146.544336 94.3656175 1.974813786 0.645385 111 100 SH19518 19518 ACT1 66.688567 170.236142 118.4623545 2.07358036 0.647335 111 101 SH9148 9148 snR7 U5 RNA U5 11 26 51.98592 231.193884 141.589902 2.151032281 -0.193384 111 102 SH2498 2498 Pro1 5' flank 27.76236 144.453432 86.107896 1.935042978 -0.120306 111 103 SH16865 16865 YGL187C_7_150529_149708_INTRON_1_342 intron 29.786123 196.088544 29.786123 167.302421 98.544272 1.993631385 -0.090749 111 104 SH4002 4002 SRP RNA 5' 33.745576 170.668877 102.2072265 2.009481603 0.12077 112 2 SH17458 17458 YIL148W_9_68708_69528_INTRON_9_442 intron 31.194392 201.945815 31.194392 171.751423 101.4729075 2.006350104 -0.030497 112 3 SH1282 1282 Ile2 tRNA 106 120 33.292164 159.129767 96.2109655 1.983224573 0.16872 112 4 SH6911 6911 snR58 5' 31.155013 144.476193 87.815603 1.943571688 0.12133 112 5 SH15095 15095 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 31.12133 179.301835 31.12133 149.180505 90.1509175 1.954970151 0.093128 112 6 SH7579 7579 snR189 5' 28.976506 148.280965 88.6287355 1.947574553 -0.050537 112 7 SH13502 13502 MT COX1 intronic 31.00763 202.410433 31.00763 172.402803 101.7052165 2.007343229 -0.045568 112 8 SH5198 5198 snR13 3' 28.843011 145.265292 87.0541515 1.939789487 -0.044249 112 9 SH19310 19310 YPL198W_16_173151_174701_INTRON_12_420 intron 28.760193 168.644713 28.760193 140.88452 84.8223565 1.928510334 -0.026442 112 10 SH6359 6359 snR43 snR43 36 48 28.677283 173.892237 101.28476 2.005544103 -0.200776 112 11 SH4185 4185 telomerase RNA 5' 30.670249 138.341889 84.506069 1.9268879 0.123174 112 12 SH18478 18478 YMR143W_13_551927_552902_INTRON_25_568 intron 28.549435 167.968514 28.549435 140.419079 84.484257 1.926775789 -0.039354 112 13 SH16697 16697 YGL031C_7_438393_437938_INTRON_1_456 intron 51.239064 247.1831 51.239064 196.944036 124.09155 2.093742209 0.14585 112 14 SH7265 7265 snR65 3' 28.50627 139.630091 84.0681805 1.924631648 -0.038149 112 15 SH8861 8861 LSR1 / U2 RNA U2 946 958 30.56972 188.408396 109.489058 2.039370719 -0.1645 112 16 SH9289 9289 RUF1 RUF1 21 38 28.52234 157.873302 93.197821 1.969405759 -0.13373 112 17 SH16387 16387 YER007C-A_5_166884_166236_INTRON_12_114 3' exon 28.530565 170.749903 28.530565 143.219338 85.8749515 1.933866505 -0.056134 112 18 SH19718 19718 Negative Control 30.586655 159.547963 95.067309 1.978031201 0.002736 112 19 SH17517 17517 YJL136C_10_156971_156248_INTRON_25_484 intron 30.563301 173.879651 30.563301 144.31635 87.4398255 1.941709282 0.082433 112 20 SH8748 8748 LSR1 / U2 RNA U2 381 393 30.5169 167.003244 98.760072 1.994581398 -0.043061 112 21 SH6568 6568 snR47 5' 30.447199 167.337339 98.892269 1.995162342 -0.049366 112 22 SH18604 18604 YNL069C_14_494998_493953_INTRON_29_477 intron 31.379565 222.139714 31.379565 191.760149 111.569857 2.047546876 -0.162933 112 23 SH19783 19783 Negative Control 30.250666 167.516069 98.8833675 1.995123248 -0.062556 112 24 SH6990 6990 snR60 snR60 31 48 38.264254 209.756236 124.010245 2.093457566 -0.17911 112 25 SH4689 4689 snR4 5' 30.011098 150.408727 90.2099125 1.955254262 0.011098 112 26 SH15353 15353 YBL026W_2_170585_171000_INTRON_55_182 intron/exon 103.725367 360.228056 103.725367 257.502689 180.614028 2.256751478 0.192929 112 27 SH16015 16015 YDL137W_4_216158_217074_INTRON_1_332 intron/exon 41.808696 250.310786 41.808696 209.50209 125.655393 2.099181133 -0.122958 112 28 SH16954 16954 YGR029W_7_543547_544199_INTRON_87_169 exon/intron 29.631801 184.841772 29.631801 156.209971 92.920886 1.968113342 -0.045955 112 29 SH141 141 Arg1 3' flank 29.507608 140.526977 85.0172925 1.92950727 0.029572 112 30 SH5306 5306 snR30 snR30 381 401 27.411478 139.809071 83.6102745 1.922259649 -0.121627 112 31 SH2628 2628 Pro3 tRNA 91 103 72.932335 197.011131 134.971733 2.130242824 0.408565 112 32 SH15235 15235 MT COX3 3' 27.242501 186.820172 27.242501 160.577671 93.910086 1.972712238 -0.242765 112 33 SH19118 19118 YPL031C_16_493033_492014_INTRON_18_119 intron 31.129737 207.125812 31.129737 176.996075 104.062906 2.01729595 -0.064936 112 34 SH7267 7267 snR65 3' 27.19632 133.785215 80.4907675 1.905746069 -0.101952 112 35 SH16994 16994 YGR118W_7_726968_727725_INTRON_66_385 intron 31.169862 216.139821 31.169862 185.969959 108.5699105 2.03570948 -0.119228 112 36 SH5510 5510 snR32 3' 27.316006 152.379322 89.847664 1.95350679 -0.196069 112 37 SH9139 9139 snR7 U5 RNA 5' 27.433548 118.713483 73.0735155 1.863760001 0.015038 112 38 SH794 794 Glu1 5' flank - tRNA2 2 31.561822 171.695835 101.6288285 2.007016919 -0.008278 112 39 SH3939 3939 RNase MRP RNaseMRP 111 132 27.733819 190.630948 109.1823835 2.038152571 -0.35627 112 40 SH13260 13260 MT COX1 COX1-ai4 27.886806 167.817785 27.886806 140.930979 84.4088925 1.926388202 -0.091648 112 41 SH9327 9327 RUF1 RUF1 211 227 96.252719 287.553235 191.902977 2.283081712 -0.090897 112 42 SH21690 21690 copy of SH10450 32.186205 180.805271 106.495738 2.027332227 -0.033264 112 43 SH717 717 Gln3 3' flank 34.294922 173.316974 103.805948 2.016222239 0.114133 112 44 SH13858 13858 MT COB Cytbi2 30.239846 203.416285 30.239846 174.176439 102.2081425 2.009485496 -0.102838 112 45 SH13118 13118 MT COX1 COX1ai3 32.255048 175.193218 32.255048 143.93817 88.096609 1.944959192 0.196364 112 46 SH11733 11733 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5551 5564 39016.21931 25395.10391 32205.66161 4.507932225 0.158446 112 47 SH10016 10016 RUF6 5' 227.961885 453.330249 340.646067 2.532303379 0.001802 112 48 SH10175 10175 RUF6 RUF6 721 733 34.064087 189.725461 111.894774 2.048809803 -0.046598 112 49 SH4326 4326 telomerase RNA telomerase 666 684 52.208843 228.505592 140.3572175 2.14723475 -0.165265 112 50 SH12326 12326 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.892826 167.900183 29.892826 139.007357 84.4500915 1.926600124 0.065361 112 51 SH14145 14145 MT COB intronic 31.866818 155.808335 31.866818 124.941517 78.4041675 1.894339148 0.283176 112 52 SH10643 10643 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 101 124 27.824555 155.893196 91.8588755 1.963121125 -0.174987 112 53 SH12425 12425 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 64.119677 265.252835 64.119677 202.133158 133.1264175 2.124264245 0.251463 112 54 SH20180 20180 YDL189W spliced 31.827727 172.349085 102.088406 2.008976423 0.003548 112 55 SH7894 7894 snoRNA cluster1 intergenic 35.847011 270.355048 35.847011 235.508037 135.677524 2.132507909 -0.482902 112 56 SH10054 10054 RUF6 RUF6 116 132 33.832809 165.033387 99.433098 1.997530971 0.161823 112 57 SH11501 11501 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4391 4406 32.823347 190.995827 111.909587 2.048867293 -0.102307 112 58 SH5225 5225 snR30 5' 29.804903 157.444734 93.6248185 1.971390989 -0.040245 112 59 SH15614 15614 YBR181C_2_592732_591670_INTRON_7_358 intron 31.804676 200.410389 31.804676 169.605713 100.7051945 2.003051873 0.018496 112 60 SH5774 5774 snR35 snR35 56 70 31.791913 171.958463 101.875188 2.008068423 0.003748 112 61 SH21506 21506 copy of SH2798 37.793031 174.269175 106.031103 2.025433279 0.22124 112 62 SH13160 13160 MT COX1 intronic 29.72992 203.219859 29.72992 174.489939 102.1099295 2.009067976 -0.136457 112 63 SH14849 14849 MT tRNA Ser2; tRNA Arg2 5' 27.675976 158.028975 27.675976 131.352999 79.5144875 1.900446264 -0.05079 112 64 SH9347 9347 RUF1 RUF1 311 328 29.589863 155.471826 92.5308445 1.966286526 -0.045058 112 65 SH17080 17080 YGR225W_7_945138_946919_INTRON_1184_1276 3' exon 35.434737 215.038434 35.434737 180.603697 108.019217 2.033501025 0.083805 112 66 SH20477 20477 YGL189C spliced 39.214966 193.657994 116.43648 2.066089068 0.018101 112 67 SH384 384 Asn1 1-13 1 13 225.708312 339.628817 282.6685645 2.451277513 0.495047 112 68 SH17671 17671 YKL006C-A_11_430270_429836_INTRON_37_177 intron 30.89355 189.937604 30.89355 160.044054 95.468802 1.979861473 0.02094 112 69 SH7661 7661 snoRNA cluster1 snR78 65.677024 307.032008 65.677024 242.354984 154.016004 2.187565851 -0.103812 112 70 SH6986 6986 snR60 snR60 11 28 113.337517 293.754215 203.545866 2.308662286 0.029512 112 71 SH21336 21336 YPR063C spliced 30.248187 175.825621 103.036904 2.012992801 -0.111897 112 72 SH6049 6049 snR37 snR37 161 183 28.182512 159.602466 93.892489 1.972630852 -0.167429 112 73 SH14823 14823 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly 37.527676 198.17893 37.527676 161.651254 99.589465 1.998213399 0.339628 112 74 SH21066 21066 YMR201C spliced 50.6651 188.385617 119.5253585 2.077460055 0.238175 112 75 SH8335 8335 snoRNA cluster4 snR53 37.334718 210.629699 37.334718 174.294981 105.8148495 2.024546619 0.206374 112 76 SH10329 10329 RUF7 RUF7 256 275 29.752781 175.372053 102.562417 2.010988247 -0.140144 112 77 SH6944 6944 snR58 81-96 + 3' 81 31.587822 172.791499 102.1896605 2.009406956 -0.013201 112 78 SH20539 20539 YGR183C spliced 31.534346 169.712186 100.623266 2.002698409 0.001901 112 79 SH16566 16566 YER133W_5_432491_433954_INTRON_178_702 intron 31.462477 192.617563 31.462477 162.155086 96.8087815 1.985914754 0.043915 112 80 SH7194 7194 snR64 snR64 36 50 1179.857023 1578.360179 1379.108601 3.139598467 0.00774 112 81 SH2926 2926 Pro8 3' flank 33.107302 201.626648 117.366975 2.069545911 -0.189262 112 82 SH8601 8601 snR19 / U1 RNA U1 501 520 27.415729 146.99843 87.2070795 1.940551743 -0.160378 112 83 SH8508 8508 snR19 / U1 RNA U1 36 57 27.287639 131.041984 79.1648115 1.898532182 -0.077888 112 84 SH17677 17677 YKL006W_11_431544_432358_INTRON_130_527 exon/intron 31.741278 220.643571 31.741278 189.902293 110.8217855 2.044625143 -0.132775 112 85 SH8314 8314 snoRNA cluster4 intergenic 28.873737 166.072234 28.873737 138.198497 83.536117 1.921874284 -0.003143 112 86 SH20670 20670 YIL069C spliced 34.236859 180.370253 107.303556 2.030614115 0.044791 112 87 SH179 179 Arg2 11-23 11 23 34.158976 181.923202 108.041089 2.033588953 0.027597 112 88 SH6984 6984 snR60 snR60 1 20 144.520248 320.613353 232.5668005 2.366547718 0.115162 112 89 SH18448 18448 YMR142C_13_551206_550205_INTRON_5_406 3' exon 30.479897 203.768189 30.479897 174.288292 102.3840945 2.010232494 -0.08871 112 90 SH10394 10394 RUF7 3' 34.115626 188.606679 111.3611525 2.046733717 -0.034807 112 91 SH10491 10491 RUF8 RUF8 381 399 30.510784 193.351857 111.9313205 2.048951627 -0.210516 112 92 SH14710 14710 MT tRNA thr2 3' 27.817241 187.871153 27.817241 161.053912 94.4355765 1.975135636 -0.201837 112 93 SH15110 15110 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " intronic / ORF3exon3 28.753156 185.466812 28.753156 157.713656 93.233406 1.96957155 -0.116184 112 94 SH10821 10821 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 991 1013 101.810872 264.723317 183.2670945 2.263084495 0.121918 112 95 SH2239 2239 Phe1 tRNA 71 86 52.573893 203.402934 127.9884135 2.107170656 0.092607 112 96 SH12602 12602 MT_15S MT_15S 50.845179 278.335668 50.845179 228.490489 139.667834 2.145096398 -0.185208 112 97 SH1804 1804 Leu8 tRNA-intron/exon 46 63 30.792462 168.736748 99.764605 1.998976487 -0.036748 112 98 SH8270 8270 snoRNA cluster4 snR67 37.33198 190.212668 37.33198 153.880688 95.606334 1.980486666 0.416495 112 99 SH176 176 Arg2 5' flank - tRNA10 5' flank 10 31.023026 141.652107 86.3375665 1.936199804 0.128511 112 100 SH13590 13590 MT COX1 3' 29.316208 188.990854 29.316208 160.674646 94.995427 1.977702699 -0.091006 112 101 SH18258 18258 YML056C_13_164176_162194_INTRON_461_868 exon/intron 29.468629 182.24949 29.468629 153.780861 91.624745 1.962012779 -0.044719 112 102 SH18326 18326 YML094W_13_82275_82849_INTRON_17_99 5' exon 33.388832 228.798907 33.388832 196.410075 114.8994535 2.060317963 -0.129014 112 103 SH7189 7189 snR64 snR64 11 25 6857.775807 9186.916269 8022.346038 3.904301391 -0.476802 112 104 SH15478 15478 YBL091C-A_2_46858_46559_INTRON_35_122 intron/exon 31.862706 182.429989 31.862706 151.567283 91.7149945 1.962440344 0.129128 113 2 SH14140 14140 MT COB intronic 29.069021 199.432882 29.069021 171.363861 100.216441 2.000938976 -0.160754 113 3 SH5685 5685 snR34 snR34 346 361 76.965285 233.879565 155.422425 2.191513681 0.104969 113 4 SH1779 1779 Leu8 5' flank 31.133016 202.766831 116.9499235 2.067999942 -0.266562 113 5 SH6378 6378 snR43 snR43 131 145 38.453965 175.892769 107.173367 2.030086875 0.214032 113 6 SH3474 3474 Tyr1 5' flank 37.328221 143.322695 90.325458 1.955810172 0.488925 113 7 SH24 24 Ala1 tRNA 16 28 28.878549 168.824524 98.8515365 1.994983424 -0.162303 113 8 SH6651 6651 snR48 snR48 81 102 32.966736 162.232559 97.5996475 1.989448249 0.130737 113 9 SH21521 21521 copy of SH3382 39.109369 162.36653 100.7379495 2.003193107 0.381632 113 10 SH19614 19614 RNA14 1.1 53.55135 241.914166 147.732758 2.169476806 -0.26726 113 11 SH16177 16177 YDR305C_4_1073479_1072737_INTRON_88_176 intron 43.051975 241.986053 43.051975 199.934078 121.4930265 2.084551351 0.001239 113 12 SH13605 13605 MT ATP8/AAP1 ATP8 28.531476 175.489757 28.531476 147.958281 88.2448785 1.945689509 -0.081436 113 13 SH214 214 Arg3 5' flank 28.509999 151.244081 89.87704 1.953648761 -0.100139 113 14 SH21771 21771 copy of SH13811 28.508594 136.914165 82.7113795 1.917565264 -0.02267 113 15 SH18433 18433 YMR142C_13_551206_550205_INTRON_5_406 intron 42.961621 240.657745 42.961621 198.696124 120.8288725 2.082170723 0.014172 113 16 SH15069 15069 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.591595 235.406743 30.591595 205.815148 118.2033715 2.072629864 -0.312757 113 17 SH15327 15327 YAL003W_1_142172_143158_INTRON_81_446 intron 32.657126 208.66673 32.657126 177.009604 104.833365 2.020499526 0.019938 113 18 SH11974 11974 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6756 6771 21600.74621 17994.78391 19797.76506 4.296616166 -0.061088 113 19 SH4556 4556 U3b (snR17b) U3b 336 355 31.574545 159.564884 95.5697145 1.980320289 0.066922 113 20 SH11626 11626 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5016 5029 46.954931 210.158286 128.5566085 2.109094407 -0.056225 113 21 SH8112 8112 snoRNA cluster 3; 5' 32.456149 170.671162 32.456149 139.215013 85.835581 1.933667351 0.236291 113 22 SH3060 3060 Ser3 5' flank - tRNA11 11 327.706377 643.054814 485.3805955 2.68608241 -0.153936 113 23 SH21539 21539 copy of SH4149 40.395245 201.333415 120.86433 2.082298149 -0.052927 113 24 SH10610 10610 RUF8 3' 31.105485 151.05011 91.0777975 1.95941252 0.081982 113 25 SH7633 7633 snR189 3' 31.992481 138.306954 85.1497175 1.930183211 0.211731 113 26 SH19799 19799 Negative Control 35.886095 168.247674 102.0668845 2.008884859 0.218554 113 27 SH19554 19554 CBP1 2.2 27.716443 162.230687 94.973565 1.97760274 -0.215268 113 28 SH402 402 Asn1 3' flank 27.588588 119.908085 73.7483365 1.867752229 0.018257 113 29 SH185 185 Arg2 41-57 41 57 52.318596 207.797214 130.057905 2.114136754 0.042284 113 30 SH18981 18981 YOR096W_15_505793_506766_INTRON_145_545 intron 27.327302 182.119463 27.327302 155.792161 91.5597315 1.96170451 -0.21246 113 31 SH10357 10357 RUF7 RUF7 396 413 103.222828 289.953498 196.588163 2.293557364 -0.038746 113 32 SH7559 7559 snR79 3' 29.06624 151.481521 90.2738805 1.955562111 -0.061048 113 33 SH21823 21823 copy of SH16003 122.92542 268.572413 195.7489165 2.291699367 0.279734 113 34 SH18832 18832 YNL302C_14_62942_61957_INTRON_21_571 intron 144.074994 472.206196 144.074994 329.131202 236.603098 2.374020427 0.063849 113 35 SH9970 9970 RUF5-1 RUF5-1 656 672 175.130824 342.89338 259.012102 2.413320056 0.197472 113 36 SH20543 20543 YGR214W spliced 31.008552 162.166642 96.587597 1.984921361 0.016676 113 37 SH15879 15879 YDL082W_4_308423_309387_INTRON_5_369 intron 31.126506 196.508751 31.126506 166.382245 98.7543755 1.994556347 -0.002301 113 38 SH13547 13547 MT COX1 intronic 27.33001 168.975993 27.33001 142.645983 84.9879965 1.929357591 -0.14355 113 39 SH14873 14873 MT tRNA Ala 5' 27.479083 180.937993 27.479083 154.45891 90.9689965 1.958893404 -0.194097 113 40 SH8109 8109 snoRNA cluster 3; 5' 27.628481 196.585566 27.628481 169.957085 98.792783 1.99472522 -0.259555 113 41 SH7278 7278 snR65 3' 29.767849 148.041092 88.9044705 1.9489236 0.007062 113 42 SH17770 17770 YKL180W_11_109271_110131_INTRON_310_615 intron 27.869413 170.834697 27.869413 143.965284 85.9173485 1.934080866 -0.109563 113 43 SH16222 16222 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.95821 196.774688 29.95821 167.816478 98.887344 1.995140712 -0.082537 113 44 SH13027 13027 MT COX1 COX1ai2 42.143009 215.481518 42.143009 174.338509 108.240759 2.034390829 0.298173 113 45 SH7287 7287 snR66 5' 31.003554 190.596429 110.7999915 2.044539727 -0.167102 113 46 SH19657 19657 SIR1 2.2 36.028024 193.284642 114.656333 2.059398048 -0.037425 113 47 SH19762 19762 Negative Control 30.93017 158.622043 94.7761065 1.976698863 0.030629 113 48 SH1459 1459 Leu2 tRNA-intron/exon 66 82 42.985269 206.1645 124.5748845 2.095430493 -0.069189 113 49 SH19687 19687 Negative Control 47.973925 208.644696 128.3093105 2.108258171 -0.026265 113 50 SH11586 11586 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4816 4829 30716.42113 26196.20672 28456.31392 4.454178643 -0.201234 113 51 SH8654 8654 LSR1 / U2 RNA 5' 31.800202 136.310436 84.055319 1.924565201 0.2109 113 52 SH15406 15406 YBL059C-A_2_110500_110086_INTRON_35_119 5' exon 31.794933 199.322342 31.794933 168.527409 100.161171 2.000699393 0.024403 113 53 SH18112 18112 YLR367W_12_855877_857316_INTRON_698_1180 intron 29.78918 209.115602 29.78918 180.326422 105.057801 2.021428306 -0.166163 113 54 SH11987 11987 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S/3'ETS 6821 6841 29.792207 113.82616 71.8091835 1.856179989 0.219438 113 55 SH11214 11214 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2956 2969 117.327919 276.911827 197.119873 2.294730411 0.175554 113 56 SH9058 9058 snR14 / U4 RNA 5' 29.792039 185.217596 107.5048175 2.031427926 -0.193174 113 57 SH5508 5508 snR32 3' 27.781711 125.26622 76.5239655 1.883797467 -0.003626 113 58 SH4273 4273 telomerase RNA telomerase 401 418 31.785097 146.350056 89.0675765 1.949719635 0.152443 113 59 SH20435 20435 YGL076C spliced 45.841488 211.389365 128.6154265 2.109293062 -0.084617 113 60 SH14263 14263 MT VAR1 includes 5’ processing site 5' / var1 33.757685 244.905541 33.757685 212.147856 122.9527705 2.089738319 -0.28628 113 61 SH2552 2552 Pro2 5' flank - tRNA10 10 156.707705 364.217861 260.462783 2.415745677 -0.031301 113 62 SH648 648 Gln2 tRNA 26 42 105.960441 302.453091 204.206766 2.310070128 -0.092629 113 63 SH715 715 Gln3 3' flank 29.602236 161.011506 95.306871 1.979124212 -0.072552 113 64 SH18528 18528 YMR225C_13_721402_720959_INTRON_59_205 intron/exon 29.503224 179.282746 29.503224 150.779522 90.141373 1.954924169 -0.026317 113 65 SH6315 6315 snR42 3' 29.37194 131.604809 80.4883745 1.905733157 0.070985 113 66 SH15775 15775 YDL012C_4_431513_431104_INTRON_46_131 exon/intron 33.145891 228.252246 33.145891 196.106355 114.626123 2.059283604 -0.135151 113 67 SH14101 14101 MT COB Cytbi4 27.065066 150.596419 27.065066 124.531353 75.7982095 1.879658947 -0.052498 113 68 SH20499 20499 YGR001C spliced 30.753513 173.689771 102.221642 2.009542853 -0.068508 113 69 SH2821 2821 Pro7 5' flank 28.602829 134.813073 81.707951 1.91226432 -0.003668 113 70 SH5744 5744 snR35 5' 32.235609 158.565038 95.4003235 1.979549847 0.112043 113 71 SH3390 3390 Thr4 tRNA 36 52 58.796537 212.14986 135.4731985 2.131853385 0.082843 113 72 SH21236 21236 YOR293W spliced 44.235888 170.097577 107.1667325 2.030059989 0.386097 113 73 SH13881 13881 MT COB intronic 29.899637 201.980166 29.899637 173.080529 101.490083 2.006423608 -0.117576 113 74 SH2177 2177 Met2 tRNA 16 28 39.273481 177.075174 108.1743275 2.034124204 0.214359 113 75 SH3514 3514 Tyr1 3' flank 27.922785 154.406814 91.1647995 1.959827181 -0.160099 113 76 SH13892 13892 MT COB intronic 26.024085 180.982478 26.024085 155.958393 90.991239 1.958999579 -0.316203 113 77 SH8829 8829 LSR1 / U2 RNA U2 786 805 26.004813 103.48922 64.7470165 1.811219761 0.020384 113 78 SH20041 20041 YBR189W spliced 42.896262 206.669832 124.783047 2.096155586 -0.076015 113 79 SH18328 18328 YML094W_13_82275_82849_INTRON_17_99 intron 31.54897 200.928263 31.54897 170.379293 100.9641315 2.004167114 -0.001218 113 80 SH8619 8619 snR19 / U1 RNA U1 591 603 40.836869 172.514374 106.6756215 2.028065182 0.298807 113 81 SH12873 12873 MT COX1 COX1ai1 31.369853 203.97377 31.369853 173.603917 102.486885 2.010668293 -0.030911 113 82 SH5085 5085 snR11 snR11 26 40 33.113873 194.054129 113.584001 2.055317163 -0.118556 113 83 SH18617 18617 YNL069C_14_494998_493953_INTRON_29_477 3' exon 42.258787 208.694193 42.258787 167.435406 104.8470965 2.020556408 0.388104 113 84 SH11380 11380 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3786 3802 21625.74073 12061.76423 16843.75248 4.226438851 0.576441 113 85 SH8057 8057 snoRNA cluster 2 intergenic 29.076663 185.435989 29.076663 157.359326 93.2179945 1.969499755 -0.091143 113 86 SH1763 1763 Leu7 3' flank 29.914355 163.740121 96.827238 1.985997544 -0.064399 113 87 SH18402 18402 YMR125W_13_517538_520445_INTRON_26_347 intron 1174.847783 2685.002534 1174.847783 1511.154751 1343.001267 3.128076422 0.071118 113 88 SH181 181 Arg2 21-33 21 33 34.387814 175.533861 104.9608375 2.021027287 0.095926 113 89 SH14840 14840 MT tRNA Asp tRNA Asp 36.19064 201.226142 36.19064 166.035502 101.113071 2.004807301 0.251012 113 90 SH11156 11156 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2666 2679 32.522029 207.371449 119.946739 2.078988445 -0.263067 113 91 SH6275 6275 snR42 snR42 156 180 28.86406 159.273958 94.069009 1.973446569 -0.11617 113 92 SH20720 20720 YJL136C spliced 30.677493 165.225303 97.951398 1.991010639 -0.022374 113 93 SH19062 19062 YOR293W_15_867094_867848_INTRON_53_489 5' exon 372.876313 976.591766 372.876313 604.715453 488.795883 2.689127539 0.106115 113 94 SH14874 14874 MT tRNA Ala 5' 27.025841 167.68546 27.025841 141.659619 84.34273 1.926047654 -0.161714 113 95 SH18741 18741 YNL162W_14_331319_332151_INTRON_5_516 intron 30.682381 218.564866 30.682381 188.882485 109.782433 2.040532851 -0.164334 113 96 SH17922 17922 YLR078C_12_286560_285737_INTRON_4_92 5' exon 28.894253 175.361624 28.894253 147.467371 88.180812 1.945374094 -0.052236 113 97 SH13178 13178 MT COX1 Exon4 56.492396 226.488588 56.492396 170.996192 113.744294 2.055929619 0.525262 113 98 SH18649 18649 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.883819 224.360954 30.883819 194.477135 112.680477 2.051848677 -0.205751 113 99 SH18938 18938 YOL121C_15_92849_92025_INTRON_21_410 intron 27.326374 145.454893 27.326374 119.128519 73.2274465 1.86467389 0.004098 113 100 SH9028 9028 snR17a / U3a U3a 426 444 29.314496 144.065417 86.6899565 1.937968785 -0.003637 113 101 SH12405 12405 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.344222 210.613875 31.344222 180.269653 105.8069375 2.024514144 -0.07072 113 102 SH19575 19575 AEP2/ATP13 0.6 31.531002 194.149335 112.8401685 2.052463726 -0.17806 113 103 SH16406 16406 YER056C-A_5_270183_269421_INTRON_38_434 intron 29.826213 176.498877 29.826213 147.672664 88.7494385 1.948165614 0.013145 113 104 SH15030 15030 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.041422 200.236542 29.041422 172.19512 100.618271 2.00267685 -0.166808 114 2 SH16307 16307 YDR450W_4_1359912_1360787_INTRON_48_482 intron 31.20064 187.207606 31.20064 157.006966 94.103803 1.973607175 0.056988 114 3 SH11809 11809 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5931 5949 91.534479 253.737085 172.635782 2.237130816 0.102057 114 4 SH18533 18533 YMR230W_13_732413_733140_INTRON_53_462 exon/intron 31.128947 180.389566 31.128947 150.260619 90.694783 1.957582306 0.087792 114 5 SH4405 4405 telomerase RNA telomerase 1061 1076 107.849896 282.274156 195.062026 2.290172731 0.055475 114 6 SH9870 9870 RUF5-1 RUF5-1 156 172 35.208344 183.197296 109.20282 2.038233854 0.052066 114 7 SH2538 2538 Pro2 5' flank 31.986928 156.164961 94.0759445 1.973478587 0.112995 114 8 SH10947 10947 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1621 1638 356.224134 474.075213 415.1496735 2.618204701 0.457026 114 9 SH2744 2744 Pro5 101-103 + 3' flank 101 29.733045 153.428079 91.580562 1.961803304 -0.02432 114 10 SH19358 19358 YPL249C-A_16_76239_75699_INTRON_17_254 3' exon 152.560034 480.87684 152.560034 329.316806 240.93842 2.381906058 0.123029 114 11 SH11054 11054 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2156 2169 32478.17683 35533.38937 34005.7831 4.53155278 -0.612849 114 12 SH13568 13568 MT COX1 Exon 6 34.702867 217.61245 34.702867 183.909583 109.306225 2.038644896 0.028195 114 13 SH20776 20776 YKL006C-A spliced 32.620646 213.129296 122.874971 2.089463428 -0.320572 114 14 SH12659 12659 MT_15S MT_15S 30.561807 183.796904 30.561807 154.235097 92.398452 1.965664695 0.028484 114 15 SH20143 20143 YDL108W spliced 821.122498 1272.791055 1046.956777 3.019928752 -0.117154 114 16 SH16182 16182 YDR367W_4_1212837_1213603_INTRON_31_131 5' exon 28.519841 179.601803 28.519841 152.081962 90.3009015 1.955692086 -0.103717 114 17 SH8704 8704 LSR1 / U2 RNA U2 161 178 28.513686 131.322973 79.9183295 1.902646397 0.010727 114 18 SH20440 20440 YGL087C spliced 32.602852 201.058649 116.8307505 2.067557167 -0.197024 114 19 SH16137 16137 YDR092W_4_629869_630598_INTRON_31_298 5' exon 34.604509 233.729571 34.604509 200.125062 117.3647855 2.069537809 -0.14169 114 20 SH4453 4453 telomerase RNA 1301 + 3' 1301 32.471414 204.144852 118.308133 2.073014601 -0.230016 114 21 SH7727 7727 snoRNA cluster1 intergenic 32.377345 224.63953 32.377345 193.262185 112.819765 2.052385191 -0.138601 114 22 SH7920 7920 snoRNA cluster1 snR72 30.235405 184.714796 30.235405 155.479391 92.857398 1.96781651 -0.000308 114 23 SH6755 6755 snR50 5' 30.132675 154.645514 92.3890945 1.965620711 -0.003015 114 24 SH80 80 Ala2 36-51 36 51 1001.043552 1362.709379 1181.876466 3.072572085 0.028239 114 25 SH7185 7185 snR64 5' - 7 -9 7 68.396084 208.276811 138.3364475 2.140936619 0.241096 114 26 SH17489 17489 YJL024C_10_396288_395627_INTRON_23_99 3' exon 29.802975 200.698743 29.802975 171.895768 100.8493715 2.003673196 -0.116651 114 27 SH109 109 Arg1 5' flank 27.678424 133.097 80.387712 1.905189668 -0.061539 114 28 SH17933 17933 YLR093C_12_327416_326514_INTRON_17_157 intron 29.537961 202.581692 29.537961 174.043731 101.790846 2.007708724 -0.145965 114 29 SH5057 5057 snR10 3' 29.388719 158.787581 94.08815 1.973534929 -0.076308 114 30 SH9645 9645 RUF4 RUF4 1 15 31.205309 160.078757 95.642033 1.980648799 0.041602 114 31 SH6397 6397 snR43 3' 31.04833 148.37516 89.711745 1.952849304 0.09264 114 32 SH9158 9158 snR7 U5 RNA U5 61 80 32.864331 150.259884 91.5621075 1.96171578 0.20038 114 33 SH6088 6088 snR37 snR37 356 372 48.364818 168.912739 108.6387785 2.035984874 0.456379 114 34 SH16872 16872 YGL187C_7_150529_149708_INTRON_1_342 intron 40.476484 205.100309 40.476484 165.623825 103.0501545 2.013048647 0.38131 114 35 SH20779 20779 YKL006W spliced 34.631616 185.431912 110.031764 2.041518076 0.011822 114 36 SH14111 14111 MT COB intronic 32.738924 195.145005 32.738924 163.406081 98.0725025 1.991547257 0.110451 114 37 SH11288 11288 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3326 3343 66.170439 232.68818 149.4293095 2.17443579 -0.014715 114 38 SH16533 16533 YER131W_5_423587_424307_INTRON_1_361 intron 118.374964 446.81588 118.374964 329.440916 223.90794 2.350069494 -0.141476 114 39 SH18731 18731 YNL147W_14_350937_351380_INTRON_19_138 intron/exon 406.632383 1067.550534 406.632383 661.918151 534.275267 2.72776507 0.062744 114 40 SH20225 20225 YDR129C spliced 31.342619 178.933546 105.1380825 2.021760052 -0.063257 114 41 SH4159 4159 SRP RNA 3' 35.474144 171.115601 103.2948725 2.014078764 0.176202 114 42 SH21495 21495 copy of SH2288 31.617371 180.553819 106.085595 2.025656417 -0.0561 114 43 SH11672 11672 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5246 5264 7266.316588 3363.106909 5314.711749 3.725479715 1.196596 114 44 SH5404 5404 snR31 snR31 86 98 33.768819 171.879648 102.8242335 2.012095481 0.109666 114 45 SH10163 10163 RUF6 RUF6 661 675 31.783234 180.384359 106.0837965 2.025649054 -0.045365 114 46 SH19502 19502 YPT1 47.878758 163.520357 105.6995575 2.024073169 0.524462 114 47 SH4324 4324 telomerase RNA telomerase 656 672 29.760179 162.958041 96.35911 1.98389278 -0.071244 114 48 SH14691 14691 MT 21S rRNA 3' 513.229695 1182.385445 513.229695 670.15575 591.6927225 2.772096228 0.331176 114 49 SH6463 6463 snR45 161-172 + 3' 161 31.736759 143.235386 87.4860725 1.94193892 0.166711 114 50 SH87 87 Ala2 tRNA + 3' flank 71 3' flank 31.73365 137.756779 84.7452145 1.928115183 0.198101 114 51 SH9491 9491 RUF2 3' 31.739047 180.656435 106.197741 2.026115279 -0.049497 114 52 SH15928 15928 YDL108W_4_267697_268698_INTRON_29_109 intron 29.745542 208.464401 29.745542 179.718859 104.7322005 2.020080228 -0.165474 114 53 SH17915 17915 YLR061W_12_263195_263949_INTRON_13_401 intron 31.761667 216.588451 31.761667 185.826784 108.7942255 2.036605845 -0.095397 114 54 SH20140 20140 YDL108W spliced 1296.356616 1680.978363 1488.66749 3.172797704 0.030838 114 55 SH9396 9396 RUF1 3' 31.775277 170.941195 101.358236 2.005859044 0.008798 114 56 SH2246 2246 Phe1 3' flank 47.859355 175.636045 111.7477 2.048238593 0.360877 114 57 SH4134 4134 SRP RNA SRP RNA 561 573 33.77429 160.815323 97.2948065 1.988089659 0.184892 114 58 SH6288 6288 snR42 snR42 221 237 29.752183 158.279731 94.015957 1.973201571 -0.048204 114 59 SH12854 12854 MT COX1 COX1ai1 31.738817 216.779611 31.738817 186.040794 108.8898055 2.036987222 -0.098201 114 60 SH10775 10775 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 761 779 31.711453 156.281108 93.9962805 1.973110669 0.094443 114 61 SH9316 9316 RUF1 RUF1 156 175 31.669315 157.014602 94.3419585 1.974704888 0.08789 114 62 SH12271 12271 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.606161 211.00974 31.606161 180.403579 106.00487 2.025325818 -0.055917 114 63 SH3943 3943 RNase MRP RNaseMRP 131 153 29.526658 132.51688 81.021769 1.908601721 0.076668 114 64 SH1708 1708 Leu6 3' flank 31.393738 185.929558 108.661648 2.036076287 -0.110288 114 65 SH12939 12939 MT COX1 COX1ai2 1086.294268 2278.592176 1086.294268 1193.297908 1139.796088 3.056827162 0.345525 114 66 SH8877 8877 LSR1 / U2 RNA U2 1026 1038 33.012541 201.836436 117.4244885 2.069758677 -0.193555 114 67 SH19924 19924 YAL030W spliced 32.788773 185.509642 109.1492075 2.038020587 -0.054389 114 68 SH7246 7246 snR65 snR65 6 27 28.686106 129.382392 79.034249 1.897815331 0.035464 114 69 SH11570 11570 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4736 4752 7429.328094 4416.555274 5922.941684 3.772537457 0.792151 114 70 SH13545 13545 MT COX1 intronic 28.300564 175.536648 28.300564 148.236084 88.268324 1.94580488 -0.100012 114 71 SH16425 16425 YER074W_5_306319_307192_INTRON_4_469 intron 37.648329 233.568745 37.648329 196.920416 117.2843725 2.069240149 -0.046888 114 72 SH8480 8480 snoRNA cluster 5 3' 28.045539 171.272177 28.045539 144.226638 86.1360885 1.935185146 -0.097708 114 73 SH3039 3039 Ser2 3' flank 27.980675 155.131187 91.555931 1.961686483 -0.159384 114 74 SH11367 11367 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3721 3736 22365.44546 15576.56559 18971.00553 4.278090351 0.213398 114 75 SH1896 1896 Lys1 5' flank 35.480252 164.696662 100.088457 2.000383994 0.240926 114 76 SH18124 18124 YLR388W_12_898158_898821_INTRON_1_488 intron 31.708276 194.760852 31.708276 164.052576 97.880426 1.990695851 0.046643 114 77 SH9168 9168 snR7 U5 RNA U5 111 123 37.359046 158.223189 97.7911175 1.990299409 0.370403 114 78 SH7756 7756 snoRNA cluster1 snR76 5512.325408 8880.642323 5512.325408 3369.316915 4440.821162 3.647463284 0.835244 114 79 SH13951 13951 MT COB Cytbi3 27.874154 144.116949 27.874154 117.242795 72.5584745 1.860688143 0.058116 114 80 SH8563 8563 snR19 / U1 RNA U1 311 327 37.199817 146.919207 92.059512 1.964068668 0.457302 114 81 SH10951 10951 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1641 1661 3746.018761 2245.295718 2995.65724 3.47649212 0.973515 114 82 SH7167 7167 snR64 5' 33.254878 162.614576 97.934727 1.990936717 0.144615 114 83 SH3718 3718 Val3 71-73 + 3' flank 71 31.292512 154.653806 92.973159 1.968357587 0.075323 114 84 SH10735 10735 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 561 579 34.91437 190.097102 112.505736 2.051174665 -0.023422 114 85 SH13313 13313 MT COX1 COX1-ai5a 31.123534 226.378721 31.123534 196.255187 113.6893605 2.055719824 -0.211846 114 86 SH18186 18186 YML024W_13_225889_226697_INTRON_4_401 5' exon 32.906689 213.225045 32.906689 181.318356 107.1125225 2.029840247 -0.011526 114 87 SH16220 16220 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 42.089248 228.889311 42.089248 187.800063 114.9446555 2.060488783 0.130745 114 88 SH6715 6715 snR49 snR49 101 122 29.132212 185.55444 107.343326 2.030775048 -0.236888 114 89 SH20558 20558 YHL001W spliced 30.939766 146.69127 88.815518 1.948488853 0.094616 114 90 SH817 817 Glu1 3' flank 30.906292 141.294492 86.100392 1.935005129 0.122735 114 91 SH14162 14162 MT COB intronic 29.034726 180.00463 29.034726 151.969904 90.502315 1.956659688 -0.065907 114 92 SH21423 21423 Trp1 spliced 179.674624 345.31172 262.493172 2.419118011 0.213033 114 93 SH14887 14887 MT tRNA Ala 3' 31.702094 195.045758 31.702094 164.343664 98.022879 1.991327454 0.044477 114 94 SH4715 4715 snR4 snR4 111 123 54.59312 195.969847 125.2814835 2.097886887 0.200341 114 95 SH6167 6167 snR39B 3' 32.575824 167.417577 99.9967005 1.99998567 0.076474 114 96 SH7511 7511 snR71 3' 30.768989 186.434925 108.601957 2.035837651 -0.139512 114 97 SH3147 3147 Ser4 3' flank 30.826558 148.291351 89.5589545 1.952109015 0.078221 114 98 SH11069 11069 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2231 2249 83.643349 252.584115 168.113732 2.225603189 0.027134 114 99 SH21882 21882 copy of SH18402 1720.42124 1823.058088 1771.739664 3.248399908 0.273907 114 100 SH2319 2319 Phe3 5' flank 49.850625 199.331265 124.590945 2.09548648 0.100808 114 101 SH6001 6001 snR37 5' 31.398889 182.076361 106.737625 2.028317535 -0.077594 114 102 SH3543 3543 Tyr2 5' flank - tRNA1 1 33.477299 187.150011 110.313655 2.042629274 -0.04435 114 103 SH19374 19374 YPR043W_16_654161_654842_INTRON_3_405 intron 31.786595 195.62485 31.786595 164.838255 98.312425 1.992608409 0.0464 114 104 SH20875 20875 YLR185W spliced 216.48718 370.672038 293.579609 2.467725888 0.294019 115 2 SH1520 1520 Leu3 tRNA 71 87 156.37807 346.723471 251.5507705 2.400625652 0.055498 115 3 SH8572 8572 snR19 / U1 RNA U1 356 371 37.543193 158.987641 98.265417 1.992400701 0.36816 115 4 SH15029 15029 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 31.142891 210.35555 31.142891 180.212659 105.677775 2.023983661 -0.082445 115 5 SH15311 15311 YAL003W_1_142172_143158_INTRON_81_446 5'exon 31.085857 173.431174 31.085857 143.345317 87.215587 1.940594108 0.123084 115 6 SH20062 20062 YBR255C-A spliced 31.017894 143.96872 87.493307 1.941974832 0.115027 115 7 SH19809 19809 Negative Control 35.115472 180.451383 107.7834275 2.03255199 0.074387 115 8 SH687 687 Gln3 5' flank 28.773067 157.253118 93.0130925 1.968544084 -0.112378 115 9 SH19814 19814 Negative Control 30.764266 185.459255 108.1117605 2.033872939 -0.134468 115 10 SH7857 7857 snoRNA cluster1 intergenic 30.683969 178.679183 30.683969 148.995214 89.8395915 1.953467769 0.064763 115 11 SH11124 11124 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2506 2519 70.014501 189.148457 129.581479 2.112542933 0.459583 115 12 SH2945 2945 Ser1 5' flank 30.578362 153.800948 92.189655 1.96468219 0.031892 115 13 SH8290 8290 snoRNA cluster4 intergenic 34.678885 222.685049 34.678885 189.006164 111.8425245 2.048606961 -0.01876 115 14 SH20404 20404 YFR031C-A spliced 96.850291 255.089777 175.970034 2.245438718 0.145506 115 15 SH18270 18270 YML056C_13_164176_162194_INTRON_461_868 intron 32.615956 218.342771 32.615956 186.726815 109.6713855 2.04009333 -0.071755 115 16 SH15062 15062 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.55175 213.045838 30.55175 183.494088 107.022919 2.029476792 -0.136603 115 17 SH7603 7603 snR189 snR189 86 103 42.890751 203.911 123.4008755 2.091318241 -0.04586 115 18 SH18757 18757 YNL162W_14_331319_332151_INTRON_5_516 intron 28.431814 168.049444 28.431814 140.61763 84.524722 1.926983751 -0.04915 115 19 SH5944 5944 snR36 snR36 176 192 32.466068 176.35221 104.409139 2.018738514 0.017341 115 20 SH7664 7664 snoRNA cluster1 snR78 32.374448 194.364691 32.374448 162.990243 97.6823455 1.989816079 0.092111 115 21 SH14356 14356 MT ORF9 and ORF10 (hypothetical) ORF9 30.234579 199.757485 30.234579 170.522906 100.3787425 2.001641751 -0.081626 115 22 SH9388 9388 RUF1 RUF1 516 537 48.454132 170.886056 109.670094 2.040088216 0.430944 115 23 SH15299 15299 MT 9S rRNA 3' 28.017229 156.111794 28.017229 129.094565 78.555897 1.895178792 -0.011213 115 24 SH13044 13044 MT COX1 COX1ai2 29.947672 178.915444 29.947672 149.967772 89.957722 1.954038449 0.009086 115 25 SH12862 12862 MT COX1 COX1ai1 27.84486 163.948219 27.84486 137.103359 82.4741095 1.916317635 -0.07336 115 26 SH7395 7395 snR68 3' 46.835325 202.224878 124.5301015 2.095274342 0.028732 115 27 SH19558 19558 CBP1 2.2 27.647385 137.25076 82.4490725 1.916185774 -0.089187 115 28 SH1251 1251 Ile2 5' flank 29.513293 158.884134 94.1987135 1.974044972 -0.068022 115 29 SH6759 6759 snR50 5' 37.288791 192.050488 114.6696395 2.059448447 0.000861 115 30 SH21093 21093 YNL012W spliced 31.17788 165.770882 98.474381 1.99332326 0.004522 115 31 SH3217 3217 Thr1 5' flank 32.969971 170.057355 101.513663 2.006524499 0.083061 115 32 SH16508 16508 YER117W_5_396765_397649_INTRON_43_513 intron 30.85904 180.731269 30.85904 150.872229 90.8656345 1.958399664 0.066429 115 33 SH12337 12337 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.565674 215.877321 36.565674 180.311647 108.4386605 2.035184144 0.124172 115 34 SH18383 18383 YMR116C_13_500687_499455_INTRON_538_810 intron 32.592919 194.206798 32.592919 162.613879 97.603399 1.989464942 0.107033 115 35 SH15524 15524 YBR048W_2_332790_333771_INTRON_46_556 intron 37.403465 224.956049 37.403465 188.552584 112.9780245 2.052993977 0.043066 115 36 SH15521 15521 YBR048W_2_332790_333771_INTRON_46_556 intron 33.553174 196.590838 33.553174 164.037664 98.795419 1.994736807 0.152456 115 37 SH10841 10841 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1091 1114 67.762874 227.731553 147.7472135 2.169519299 0.049332 115 38 SH14166 14166 MT COB intronic 40.582948 213.018347 40.582948 173.435399 107.0091735 2.02942101 0.282797 115 39 SH9863 9863 RUF5-1 RUF5-1 121 142 32.92452 156.807993 94.8662565 1.977111763 0.162894 115 40 SH19842 19842 Negative Control 33.080907 175.055318 104.0681125 2.017317678 0.054118 115 41 SH21903 21903 copy of SH19203 31.255951 150.374016 90.8149835 1.958157508 0.095631 115 42 SH11547 11547 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4621 4638 4463.727638 2625.688189 3544.707914 3.549580455 0.955767 115 43 SH11863 11863 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6201 6216 33.462701 150.344225 91.903463 1.963331876 0.235972 115 44 SH19228 19228 YPL090C_16_378390_377286_INTRON_7_400 intron 112.433713 428.953001 112.433713 317.519288 214.9765005 2.332390989 -0.124847 115 45 SH3401 3401 Thr4 3' flank 27.593432 119.744059 73.6687455 1.867283274 0.019753 115 46 SH12848 12848 MT COX1 COX1ai1 31.602497 217.446781 31.602497 186.844284 109.2233905 2.038315654 -0.11063 115 47 SH17436 17436 YIL133C_9_99416_98527_INTRON_32_321 intron 29.618501 229.520917 29.618501 200.902416 115.2604585 2.061680343 -0.310714 115 48 SH17444 17444 YIL133C_9_99416_98527_INTRON_32_321 3' exon 29.628705 189.095226 29.628705 160.466521 95.047613 1.977941215 -0.067951 115 49 SH17908 17908 YLR061W_12_263195_263949_INTRON_13_401 intron 31.640032 221.534549 31.640032 190.894517 111.2672745 2.04636745 -0.145396 115 50 SH19665 19665 SIR1 2.4 29.66076 156.709583 93.1851715 1.969346809 -0.046515 115 51 SH1019 1019 Gly2 3' flank 32.683265 186.855313 109.769289 2.040480851 -0.070446 115 52 SH14568 14568 MT 21S rRNA 21S rRNA3 41.731654 251.912606 41.731654 211.180952 126.456303 2.101940481 -0.142088 115 53 SH3587 3587 Val1 5' flank 29.722899 144.249342 86.9861205 1.939449962 0.024508 115 54 SH11430 11430 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4036 4051 11254.78497 5339.401865 8297.093418 3.91892598 1.027859 115 55 SH8615 8615 snR19 / U1 RNA U1 571 587 33.751062 171.209254 102.480158 2.010639786 0.115631 115 56 SH4491 4491 U3b (snR17b) U3b 11 30 33.751025 154.465812 94.1084185 1.973628475 0.224532 115 57 SH16085 16085 YDR025W_4_491510_492319_INTRON_46_384 intron 33.744509 219.672332 33.744509 186.927823 110.336166 2.042717889 -0.032822 115 58 SH7019 7019 snR60 3' 33.731155 172.383239 103.057197 2.013078326 0.103392 115 59 SH14458 14458 MT 21S rRNA 21S rRNA3 37.717231 204.897545 37.717231 168.180314 102.9487725 2.012621173 0.278848 115 60 SH19321 19321 YPL198W_16_173151_174701_INTRON_12_420 3' exon 31.672618 221.126013 31.672618 190.453395 111.0630065 2.045569426 -0.140259 115 61 SH3369 3369 Thr4 5' flank 35.616216 178.841012 107.228614 2.030310692 0.106475 115 62 SH9697 9697 RUF4 RUF4 261 278 29.554044 152.243081 90.8985625 1.958557015 -0.030571 115 63 SH723 723 Gln3 3' flank 30.447725 158.243263 94.345494 1.974721163 -0.00006 115 64 SH9197 9197 snR7 U5 RNA 3' 31.302926 197.92264 114.612783 2.059233058 -0.219238 115 65 SH7419 7419 snR69 5' - 15 -4 15 51.833663 165.509579 108.671621 2.036116145 0.544462 115 66 SH3269 3269 Thr2 5' flank 30.937021 189.520602 110.2288115 2.042295125 -0.160124 115 67 SH13836 13836 MT COB Cytbi2 28.782791 197.188764 28.782791 169.405973 99.094382 1.996049034 -0.171981 115 68 SH14464 14464 MT 21S rRNA 21S rRNA3 26.653298 173.701121 26.653298 148.047823 87.3505605 1.941265696 -0.225321 115 69 SH20067 20067 YBR230C spliced 34.125869 182.433147 108.279508 2.034546274 0.021711 115 70 SH16257 16257 YDR424C_4_1319830_1319376_INTRON_26_121 5' exon 35.831822 229.248151 35.831822 194.416329 115.1240755 2.061166156 -0.054002 115 71 SH10574 10574 RUF8 RUF8 796 810 37.569516 161.139398 99.354457 1.997187354 0.346314 115 72 SH3424 3424 Trp1 5' flank 64.987634 189.385817 127.1867255 2.104441786 0.400191 115 73 SH21774 21774 copy of SH14038 27.974222 131.358218 79.66622 1.901274211 -0.028778 115 74 SH15405 15405 YBL059C-A_2_110500_110086_INTRON_35_119 5' exon 31.738777 216.993787 31.738777 186.25501 108.9968935 2.03741412 -0.100145 115 75 SH4863 4863 snR8 snR8 96 111 29.866146 160.270978 95.068562 1.978036925 -0.050398 115 76 SH17133 17133 YHR010W_8_126513_127484_INTRON_32_592 intron 33.658287 219.31957 33.658287 186.661283 110.159785 2.04202308 -0.033478 115 77 SH3743 3743 Val4 5' flank 31.774764 196.408125 114.0914445 2.057253079 -0.188354 115 78 SH4070 4070 SRP RNA SRP RNA 241 257 52.58344 201.691271 127.1373555 2.104273174 0.111306 115 79 SH1273 1273 Ile2 tRNA-intron 61 75 41.163323 187.086561 114.124942 2.05738057 0.126094 115 80 SH1775 1775 Leu8 5' flank 29.783586 137.879749 83.8316675 1.923408105 0.063998 115 81 SH18418 18418 YMR133W_13_536206_537608_INTRON_1243_1358 intron 38.176602 185.726284 38.176602 148.549682 93.363142 1.970175459 0.494542 115 82 SH17293 17293 YHR141C_8_382752_381991_INTRON_5_445 intron 31.521869 209.239639 31.521869 178.71777 105.1198195 2.021684606 -0.05137 115 83 SH5586 5586 snR33 3' 31.450073 152.78377 92.1169215 1.964339416 0.095601 115 84 SH13867 13867 MT COB intronic 33.252175 225.348831 33.252175 193.096656 113.1744155 2.05374826 -0.105217 115 85 SH19604 19604 AEP2/ATP13 2.1 54.688416 239.965618 147.327017 2.168282396 -0.234118 115 86 SH16394 16394 YER044C-A_5_239773_238459_INTRON_64_151 intron/exon 31.286469 202.832595 31.286469 172.546126 101.9162975 2.008243638 -0.029677 115 87 SH315 315 Arg5 5' flank 34.964897 178.781963 106.87343 2.028869748 0.084923 115 88 SH15358 15358 YBL026W_2_170585_171000_INTRON_55_182 intron 29.355507 161.071434 29.355507 132.715927 81.035717 1.908676479 0.063255 115 89 SH5111 5111 snR11 snR11 156 178 27.465001 130.805323 79.135162 1.898369496 -0.063065 115 90 SH13747 13747 MT COB Exon1 28.343599 174.025797 28.343599 146.682198 87.5128985 1.942072068 -0.0886 115 91 SH3750 3750 Val4 5' flank 31.055424 186.288796 108.67211 2.036118099 -0.126524 115 92 SH5580 5580 snR33 3' 30.989101 136.174465 83.581783 1.922111631 0.157262 115 93 SH19577 19577 AEP2/ATP13 0.6 32.763789 193.342569 113.053179 2.053282779 -0.12509 115 94 SH5927 5927 snR36 snR36 91 108 49.270471 209.079587 129.175029 2.111178568 -0.012508 115 95 SH14296 14296 MT VAR1 includes 5’ processing site VAR1 30.852607 202.990965 30.852607 173.138358 101.9954825 2.008580937 -0.059264 115 96 SH5741 5741 snR34 3' 30.865138 176.528085 103.6966115 2.015764565 -0.078204 115 97 SH19096 19096 YOR312C_15_901173_900242_INTRON_2_427 intron 32.757897 227.64516 32.757897 195.887263 114.32258 2.058132017 -0.14737 115 98 SH11886 11886 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6316 6331 55.070149 182.141618 118.6058835 2.074106233 0.367155 115 99 SH18054 18054 YLR333C_12_796335_795573_INTRON_1_423 intron 33.004625 178.863228 33.004625 146.858603 89.931614 1.953912388 0.227769 115 100 SH15876 15876 YDL082W_4_308423_309387_INTRON_5_369 intron 27.590724 181.153459 27.590724 154.562735 91.0767295 1.959407427 -0.186081 115 101 SH21136 21136 YNL147W spliced 29.62417 172.236235 100.9302025 2.004021145 -0.12991 115 102 SH6398 6398 snR43 3' 26.028503 116.397363 71.212933 1.852558873 -0.076299 115 103 SH9449 9449 RUF2 RUF2 86 102 29.97978 141.515377 85.7475785 1.933221864 0.057544 115 104 SH17936 17936 YLR093C_12_327416_326514_INTRON_17_157 intron 32.066954 180.398099 32.066954 149.331145 90.6990495 1.957602736 0.15443 116 2 SH15898 15898 YDL083C_4_307788_306925_INTRON_25_456 exon/intron 31.282822 192.434355 31.282822 162.151533 96.7171775 1.985503614 0.033232 116 3 SH7009 7009 snR60 3' 29.114645 162.418858 95.7667515 1.981214756 -0.11407 116 4 SH21347 21347 YPR132W spliced 69.373569 216.412171 142.89287 2.155010559 0.173349 116 5 SH10432 10432 RUF8 RUF8 86 101 39.526758 179.956626 109.741692 2.040371652 0.183753 116 6 SH3549 3549 Tyr2 tRNA 16 32 499.090513 831.364569 665.227541 2.822970221 -0.056316 116 7 SH20860 20860 YLR078C spliced 28.866911 165.535614 97.2012625 1.987671906 -0.147202 116 8 SH12495 12495 MT_tRNA Pro 5' / tRNA 28.786948 183.991864 28.786948 156.204916 92.495932 1.966122633 -0.105959 116 9 SH6040 6040 snR37 snR37 116 133 28.70708 146.120151 87.4136155 1.941579083 -0.058771 116 10 SH4971 4971 snR9 3' 43.139032 181.623016 112.381024 2.050692985 0.221959 116 11 SH10773 10773 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 751 770 28.576117 167.770485 98.173301 1.991993394 -0.179078 116 12 SH18441 18441 YMR142C_13_551206_550205_INTRON_5_406 intron 28.535802 203.950265 28.535802 176.414463 102.4751325 2.010618489 -0.224236 116 13 SH17576 17576 YJL191W_10_73786_74610_INTRON_11_418 exon/intron 30.571314 205.201334 30.571314 175.63002 103.100667 2.013261475 -0.090903 116 14 SH9212 9212 snR6 / U6 RNA 5' 39.834253 216.586223 128.210238 2.107922706 -0.228203 116 15 SH4979 4979 snR10 5' 30.545833 147.746771 89.146302 1.950103332 0.062215 116 16 SH20153 20153 YDL125C spliced 28.467763 167.059496 97.7636295 1.990177316 -0.183521 116 17 SH8302 8302 snoRNA cluster4 intergenic 30.480509 203.511448 30.480509 174.030939 102.255724 2.009687628 -0.087171 116 18 SH16887 16887 YGL189C_7_148970_148233_INTRON_1_368 intron 30.414601 174.492781 30.414601 145.07818 87.7463905 1.943229261 0.068046 116 19 SH9152 9152 snR7 U5 RNA U5 31 47 40.557426 202.845157 121.7012915 2.085295187 -0.067617 116 20 SH5556 5556 snR33 snR33 66 83 28.191631 149.863282 89.0274565 1.949523966 -0.116642 116 21 SH5989 5989 snR36 3' 26.067553 145.283313 85.675433 1.932856308 -0.257432 116 22 SH7095 7095 snR63 5' 54.37501 228.63793 141.50647 2.150776297 -0.135648 116 23 SH258 258 Arg3 3' flank 27.920998 174.881181 101.4010895 2.006042621 -0.260835 116 24 SH19698 19698 Negative Control 62.17937 195.385705 128.7825375 2.109856978 0.300345 116 25 SH14559 14559 MT 21S rRNA 21S rRNA3 29.78908 183.61985 29.78908 154.83077 92.309925 1.965248398 -0.027785 116 26 SH18572 18572 YNL012W_14_609682_611661_INTRON_106_189 3' exon 29.713213 198.687163 29.713213 169.97395 99.8435815 1.999320151 -0.110866 116 27 SH21681 21681 copy of SH10031 29.623157 162.467697 96.045427 1.982476692 -0.07838 116 28 SH1479 1479 Leu2 3' flank 33.490737 184.802989 109.146863 2.038011258 -0.022573 116 29 SH7630 7630 snR189 3' 31.359984 139.965669 85.6628265 1.9327924 0.160633 116 30 SH9879 9879 RUF5-1 RUF5-1 201 213 45.021372 190.212148 117.61676 2.070469212 0.141997 116 31 SH9236 9236 snR6 / U6 RNA U6 51 67 71.413774 256.255317 163.8345455 2.214405481 -0.144038 116 32 SH15164 15164 MT tRNA Val tRNA 38.692037 237.861381 38.692037 200.169344 119.4306905 2.077115943 -0.065529 116 33 SH19089 19089 YOR312C_15_901173_900242_INTRON_2_427 5' exon 65.8601 281.560388 65.8601 216.700288 141.280194 2.150081283 0.128218 116 34 SH7114 7114 snR63 snR63 76 95 34.525402 148.45642 91.490911 1.961377952 0.307255 116 35 SH13854 13854 MT COB Cytbi2 34.466635 180.386105 34.466635 146.91947 90.6930525 1.957574019 0.314644 116 36 SH21503 21503 copy of SH2553 960.848972 1598.191117 1279.520045 3.107047094 -0.278661 116 37 SH4360 4360 telomerase RNA telomerase 836 848 37.420904 177.726674 107.573789 2.031706466 0.172175 116 38 SH11611 11611 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4941 4956 42.389279 183.808398 113.0988385 2.053458145 0.184104 116 39 SH14900 14900 MT tRNA Ile tRNA 44.499575 220.789355 44.499575 177.28978 110.8946775 2.044910702 0.295778 116 40 SH644 644 Gln2 tRNA 6 23 68.301417 230.49161 149.3965135 2.174340462 0.031608 116 41 SH9835 9835 RUF5-1 5' 33.053566 150.664148 91.858857 1.963121037 0.210119 116 42 SH17589 17589 YJL191W_10_73786_74610_INTRON_11_418 intron 37.122277 213.005587 37.122277 176.88331 107.0027935 2.029395116 0.174663 116 43 SH900 900 Glu3 tRNA 11 27 4054.052489 3897.76191 3975.9072 3.599436239 0.204922 116 44 SH10637 10637 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 71 87 54.232138 209.991563 132.1118505 2.120941776 0.043893 116 45 SH16912 16912 YGL251C_7_31636_27921_INTRON_59_210 5' exon 32.416132 204.97599 32.416132 173.559858 102.987995 2.012786603 0.030679 116 46 SH6707 6707 snR49 snR49 61 78 29.475901 133.512952 81.4944265 1.911127908 0.067208 116 47 SH4547 4547 U3b (snR17b) U3b 291 307 31.495173 160.448411 95.971792 1.982143604 0.056607 116 48 SH5021 5021 snR10 snR10 136 152 33.518669 170.75608 102.1373745 2.00918469 0.10975 116 49 SH1167 1167 His1 tRNA 56 71 5900.495676 8297.799434 7099.147555 3.851206203 -0.509359 116 50 SH5139 5139 snR11 3' 39.587133 207.022396 123.3047645 2.090979858 -0.128732 116 51 SH2196 2196 Met2 3' flank 31.630139 169.730772 100.6804555 2.002945172 0.00746 116 52 SH10342 10342 RUF7 RUF7 321 340 31.660893 203.042224 117.3515585 2.069488862 -0.248711 116 53 SH307 307 Arg4 3' flank 31.684982 192.372117 112.0285495 2.049328713 -0.156707 116 54 SH9042 9042 snR17a / U3a 3' 29.700083 127.245106 78.4725945 1.894718012 0.12071 116 55 SH18437 18437 YMR142C_13_551206_550205_INTRON_5_406 intron 31.709868 197.859705 31.709868 167.149837 99.4298525 1.997516795 0.027734 116 56 SH301 301 Arg4 3' flank 31.711991 196.586142 114.1490665 2.057472364 -0.192252 116 57 SH14035 14035 MT COB Cytbi4 31.708081 174.212583 31.708081 143.504502 87.6062915 1.942535296 0.163315 116 58 SH16945 16945 YGR027C_7_534779_534126_INTRON_1_312 intron 31.697031 224.744153 31.697031 194.047122 112.8720765 2.052586515 -0.17088 116 59 SH5901 5901 snR36 5' 31.675602 138.512285 85.0939435 1.929898651 0.189871 116 60 SH12398 12398 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.636951 187.054161 33.636951 154.41721 94.0270805 1.973252952 0.218523 116 61 SH12161 12161 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7691 7709 43.56447 203.066999 123.3157345 2.091018494 -0.026624 116 62 SH13339 13339 MT COX1 COX1-ai5a 28.513324 157.582533 28.513324 130.069209 79.2912665 1.899225355 0.018651 116 63 SH17148 17148 YHR012W_8_129473_130440_INTRON_49_167 5' exon 31.377878 197.093626 31.377878 166.715748 99.046813 1.995840506 0.010701 116 64 SH20767 20767 YKL002W spliced 43.080037 232.588681 137.834359 2.139357491 -0.339015 116 65 SH16404 16404 YER056C-A_5_270183_269421_INTRON_38_434 intron 50.707886 233.234874 50.707886 183.526988 117.117437 2.06862156 0.2975 116 66 SH17321 17321 YIL004C_9_348502_347943_INTRON_12_142 exon/intron 36.694496 230.756765 36.694496 195.062269 115.8783825 2.064002424 -0.044395 116 67 SH10583 10583 RUF8 RUF8 841 860 30.629931 145.715846 88.1728885 1.945335068 0.079134 116 68 SH4486 4486 U3b (snR17b) 5' - 6 6 30.416872 183.301113 106.8589925 2.028811075 -0.143805 116 69 SH10647 10647 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 121 138 950.223903 1137.402842 1043.813373 3.018622856 0.250367 116 70 SH4389 4389 telomerase RNA telomerase 981 1000 28.168461 139.080321 83.624391 1.922332968 -0.060182 116 71 SH5249 5249 snR30 snR30 96 111 33.742532 185.282023 109.5122775 2.039462811 -0.017969 116 72 SH1179 1179 His1 3' flank 35.566143 194.935714 115.2509285 2.061644433 -0.065078 116 73 SH6031 6031 snR37 snR37 71 88 27.995803 143.408432 85.7021175 1.932991552 -0.097013 116 74 SH14664 14664 MT 21S rRNA 21S rRNA4 33.677578 225.489988 33.677578 192.81241 113.244994 2.054019013 -0.087503 116 75 SH926 926 Glu3 3' flank 29.930624 163.878958 96.904791 1.986345249 -0.063957 116 76 SH13777 13777 MT COB intronic 28.06844 191.188683 28.06844 164.120243 96.0943415 1.982697815 -0.198459 116 77 SH5916 5916 snR36 snR36 36 55 29.973499 161.227255 95.600377 1.980459605 -0.047771 116 78 SH8084 8084 snoRNA cluster 2 3' 33.752764 196.512413 33.752764 163.759649 98.7562065 1.994564399 0.165267 116 79 SH673 673 Gln2 3' flank 35.613628 222.223017 128.9183225 2.110314646 -0.354132 116 80 SH6379 6379 snR43 snR43 136 152 37.452378 166.211996 101.832187 2.007885071 0.290272 116 81 SH15068 15068 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 33.610788 196.337437 33.610788 163.726649 98.6687185 1.994179488 0.157592 116 82 SH4977 4977 snR10 5' 29.786724 164.985317 97.3860205 1.98849662 -0.079409 116 83 SH21267 21267 YPL081W spliced 35.381271 170.440614 102.9109425 2.012461556 0.179731 116 84 SH1742 1742 Leu7 tRNA 6 18 45834.05657 21901.91426 33867.98541 4.529789364 0.602393 116 85 SH1202 1202 Ile1 5' flank 34.361242 165.380753 99.8709975 1.999439388 0.188659 116 86 SH4766 4766 snR5 snR5 1 20 44.659591 191.387204 118.0233975 2.071968112 0.123081 116 87 SH8941 8941 snR17a / U3a 5' - 7 -9 7 31.488344 150.099229 90.7937865 1.958056128 0.112485 116 88 SH21195 21195 YOL121C spliced 35.190827 144.413364 89.8020955 1.953286471 0.370995 116 89 SH19176 19176 YPL079W_16_406631_407534_INTRON_12_432 intron 29.532706 210.306775 29.532706 181.774069 105.6533875 2.023883426 -0.190451 116 90 SH466 466 Asp1 3' flank 38.788325 160.673038 99.7306815 1.998828787 0.389451 116 91 SH13233 13233 MT COX1 COX1-ai4 29.395753 182.437902 29.395753 154.042149 91.718951 1.962459079 -0.051233 116 92 SH6918 6918 snR58 5' 31.167785 156.536329 93.852057 1.972443796 0.057233 116 93 SH9309 9309 RUF1 RUF1 121 137 32.936554 144.956927 88.9467405 1.949130038 0.234042 116 94 SH17553 17553 YJL189W_10_75932_76473_INTRON_7_392 intron 32.87216 217.970724 32.87216 186.098564 109.485362 2.039356059 -0.056695 116 95 SH79 79 Ala2 31-45 31 45 36.528867 189.214247 112.871557 2.052584516 0.018697 116 96 SH20344 20344 YER093C-A spliced 35.618591 193.237391 114.427991 2.058532273 -0.044978 116 97 SH1545 1545 Leu3 3' flank 34.758106 147.768311 91.2632085 1.960295733 0.324533 116 98 SH15497 15497 YBL092W_2_45639_46364_INTRON_1_333 intron 33.01509 200.340839 33.01509 168.325749 100.6704195 2.002901878 0.096016 116 99 SH12566 12566 MT_15S MT_15S 36.888601 229.875157 36.888601 193.986556 115.4375785 2.062347208 -0.028619 116 100 SH6244 6244 snR42 snR42 1 20 65.334585 217.852322 141.5934535 2.151043174 0.110711 116 101 SH18317 18317 YML085C_13_99400_97941_INTRON_26_141 exon/intron 29.759552 184.119149 29.759552 155.359597 92.5595745 1.966421349 -0.032605 116 102 SH6338 6338 snR43 5' 29.932913 176.92739 103.4301515 2.014647161 -0.137831 116 103 SH3221 3221 Thr1 5' flank 30.100986 179.811075 104.9560305 2.021007397 -0.14379 116 104 SH18413 18413 YMR125W_13_517538_520445_INTRON_26_347 3' exon 32.184008 195.146289 32.184008 163.962281 98.0731445 1.9915501 0.075041 117 2 SH14538 14538 MT 21S rRNA 21S rRNA3 29.212899 189.593949 29.212899 161.38105 95.2969745 1.979079113 -0.101885 117 3 SH15261 15261 MT 9S rRNA 5' / 9S 29.160141 181.808214 29.160141 153.648073 91.404107 1.96096571 -0.065859 117 4 SH3301 3301 Thr2 3' flank 29.102609 168.99724 99.0499245 1.995854149 -0.147092 117 5 SH16889 16889 YGL189C_7_148970_148233_INTRON_1_368 intron/exon 29.039633 180.516554 29.039633 152.476921 90.758277 1.957886242 -0.068254 117 6 SH10759 10759 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 681 694 51.046459 205.48628 128.2663695 2.108112802 0.04994 117 7 SH16314 16314 YDR471W_4_1401759_1402553_INTRON_32_415 exon/intron 30.985333 191.262349 30.985333 161.277016 96.1311745 1.982864248 0.020865 117 8 SH19258 19258 YPL143W_16_282121_282969_INTRON_20_544 exon/intron 28.819577 180.893289 28.819577 153.073712 90.9466445 1.95878668 -0.087205 117 9 SH6299 6299 snR42 snR42 276 288 34.97714 182.074399 108.5257695 2.035532874 0.054549 117 10 SH3557 3557 Tyr2 tRNA 56 68 36.967699 177.297366 107.1325325 2.029921371 0.165719 117 11 SH7369 7369 snR68 snR68 66 90 28.619356 150.826664 89.72301 1.952903835 -0.089922 117 12 SH4407 4407 telomerase RNA telomerase 1071 1083 111.430461 261.111575 186.271018 2.270145288 0.236057 117 13 SH13716 13716 MT tRNAGlu (and 5' processing site for COB) 3' 28.547391 166.139571 28.547391 138.59218 83.5697855 1.922049287 -0.029299 117 14 SH9104 9104 snR14 / U4 RNA U4 136 153 47.101368 163.329872 105.21562 2.022080219 0.517301 117 15 SH20561 20561 YHR001W-A spliced 34.670661 162.543722 98.6071915 1.99390859 0.222997 117 16 SH14687 14687 MT 21S rRNA 21S rRNA4 32.562825 186.935633 32.562825 155.372808 93.9678165 1.972979135 0.151586 117 17 SH17605 17605 YJL205C-A_10_50443_50139_INTRON_33_175 intron 32.491545 183.690886 32.491545 152.199341 92.345443 1.965415469 0.166316 117 18 SH11283 11283 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3301 3316 38.537696 170.523713 104.5307045 2.019243877 0.281277 117 19 SH13208 13208 MT COX1 COX1-ai4 32.279065 217.701806 32.279065 186.422741 109.350903 2.038822374 -0.081443 117 20 SH15171 15171 MT tRNA Val 3' 30.12399 196.451491 30.12399 167.327501 98.7257455 1.994430422 -0.069256 117 21 SH164 164 Arg2 5' flank 37.093363 153.59522 95.3442915 1.979294696 0.406796 117 22 SH1021 1021 Gly2 3' flank 35.961396 149.445524 92.70346 1.967095944 0.376687 117 23 SH16456 16456 YER074W-A_0_5_307649_INTRON_95_196 intron 26.819649 175.924643 26.819649 150.104994 88.4623215 1.946758332 -0.222972 117 24 SH18396 18396 YMR125W_13_517538_520445_INTRON_26_347 intron 27.768239 199.535521 27.768239 172.767282 100.2677605 2.001161315 -0.262369 117 25 SH7517 7517 snR79 5' 259.922944 554.539784 407.231364 2.609841219 -0.186085 117 26 SH4281 4281 telomerase RNA telomerase 441 459 29.678131 145.847993 87.763062 1.943311767 0.012744 117 27 SH4593 4593 U3b (snR17b) 3' 31.61377 165.873199 98.7434845 1.994508449 0.02985 117 28 SH5329 5329 snR30 snR30 496 512 31.526776 157.290641 94.4087085 1.975012057 0.077106 117 29 SH4255 4255 telomerase RNA telomerase 311 332 31.413629 159.637005 95.525317 1.980118488 0.056912 117 30 SH6171 6171 snR40 5' 33.25385 172.100184 102.677017 2.011473243 0.086956 117 31 SH7307 7307 snR66 snR66 26 40 31.129823 168.591417 99.86062 1.999394258 -0.015503 117 32 SH15885 15885 YDL082W_4_308423_309387_INTRON_5_369 intron 31.96028 212.405086 31.96028 181.444806 106.702543 2.02817477 -0.047661 117 33 SH18236 18236 YML026C_13_223828_222987_INTRON_48_448 intron 30.848152 180.497697 30.848152 150.649545 90.7488485 1.957841123 0.066893 117 34 SH21588 21588 copy of SH6045 44.361317 211.337433 127.849375 2.106698609 -0.104922 117 35 SH4688 4688 snR4 5' 30.672018 134.70827 82.690144 1.917453748 0.144038 117 36 SH11924 11924 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6506 6522 34.519091 177.878054 106.1985725 2.026118679 0.078104 117 37 SH12105 12105 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7411 7426 278.126902 540.365125 409.2460135 2.611984458 -0.061184 117 38 SH1780 1780 Leu8 5' flank 39.459135 191.551916 115.5055255 2.06260276 0.046547 117 39 SH8883 8883 LSR1 / U2 RNA U2 1056 1070 42.494118 169.646005 106.0700615 2.025592821 0.363467 117 40 SH812 812 Glu1 3' flank 30.900643 152.961654 91.9311485 1.963462686 0.058083 117 41 SH10182 10182 RUF6 RUF6 756 770 31.006799 172.034484 101.5206415 2.006554353 -0.043446 117 42 SH3689 3689 Val3 5' flank 31.107062 166.514612 98.810837 1.994804578 -0.004277 117 43 SH12811 12811 MT COX1 COX1ai1 57.892115 252.846018 57.892115 195.953903 126.923009 2.103540359 0.240859 117 44 SH7723 7723 snoRNA cluster1 snR77/intergenic 31.265782 195.456087 31.265782 165.190305 98.2280435 1.992235494 0.01335 117 45 SH13224 13224 MT COX1 COX1-ai4 29.345189 178.906148 29.345189 150.560959 89.953074 1.954016009 -0.036288 117 46 SH1238 1238 Ile1 3' flank 148.13402 304.344423 226.2392215 2.354567898 0.236776 117 47 SH3064 3064 Ser3 tRNA 16 30 1996.137014 2683.993538 2340.065276 3.369227972 -0.135151 117 48 SH4631 4631 snR3 snR3 71 88 33.443757 156.656273 95.050015 1.97795219 0.193129 117 49 SH5786 5786 snR35 snR35 116 135 31.499025 188.364241 109.931633 2.041122679 -0.12823 117 50 SH18417 18417 YMR133W_13_536206_537608_INTRON_1243_1358 intron 31.541165 212.623659 31.541165 182.082494 106.8118295 2.028619354 -0.069394 117 51 SH7607 7607 snR189 snR189 106 124 29.586016 164.397552 96.991784 1.986734948 -0.090549 117 52 SH4010 4010 SRP RNA 5' 27.622033 148.126149 87.874091 1.943860846 -0.150544 117 53 SH21263 21263 YPL079W spliced 35.634483 199.168968 117.4017255 2.06967448 -0.11051 117 54 SH550 550 Cys1 tRNA 51 66 165.285138 377.578826 271.431982 2.433661018 -0.038294 117 55 SH16378 16378 YER007C-A_5_166884_166236_INTRON_12_114 5' exon 41.674991 264.415246 41.674991 223.740255 132.707623 2.12289587 -0.27293 117 56 SH14243 14243 MT tRNA Ser tRNA 31.668911 213.017619 31.668911 182.348708 107.0088095 2.029419532 -0.067017 117 57 SH323 323 Arg5 5' flank 29.67074 140.721008 85.195874 1.930418563 0.040108 117 58 SH7917 7917 snoRNA cluster1 snR72 31.663856 157.813122 31.663856 127.149266 79.406561 1.899856388 0.256069 117 59 SH17320 17320 YIL004C_9_348502_347943_INTRON_12_142 5' exon 43.65622 214.971676 43.65622 172.315456 107.985838 2.033366803 0.348551 117 60 SH11107 11107 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2421 2434 30816.88772 23766.26884 27291.57828 4.436028652 -0.0424 117 61 SH6981 6981 snR60 5' - 5 -14 5 31.550305 128.296579 79.923442 1.902674179 0.241502 117 62 SH1262 1262 Ile2 tRNA 6 22 47.386102 178.445342 112.915722 2.052754416 0.31865 117 63 SH13387 13387 MT COX1 Exon 5b 31.335294 201.222392 31.335294 170.887098 101.111196 2.004799247 -0.016946 117 64 SH4045 4045 SRP RNA SRP RNA 116 134 29.209895 158.046157 93.628026 1.971405867 -0.085183 117 65 SH11647 11647 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5121 5141 29.03541 123.055629 76.0455195 1.881073631 0.101906 117 66 SH20837 20837 YKR095W-A spliced 32.730041 200.908783 116.819412 2.067515016 -0.191101 117 67 SH6076 6076 snR37 snR37 296 312 732.496272 808.639951 770.5681115 2.886811033 0.470718 117 68 SH16301 16301 YDR450W_4_1359912_1360787_INTRON_48_482 intron 522.452253 1289.125497 522.452253 767.673244 645.0627485 2.809601963 0.131112 117 69 SH14097 14097 MT COB Cytbi4 32.094289 195.92748 32.094289 164.833191 98.46374 1.993276328 0.06444 117 70 SH2608 2608 Pro3 5' flank - tRNA5 5 33.847116 185.067464 109.45729 2.039244691 -0.012306 117 71 SH10597 10597 RUF8 RUF8 911 923 41.334809 154.329883 97.832346 1.990482468 0.533591 117 72 SH17191 17191 YHR021C_8_148660_147862_INTRON_4_553 intron 39.38932 240.487093 39.38932 202.097773 120.7435465 2.081863928 -0.07672 117 73 SH15942 15942 YDL125C_4_239605_239018_INTRON_98_208 5' exon 37.504113 187.471163 37.504113 150.96705 94.2355815 1.974214915 0.444918 117 74 SH9175 9175 snR7 U5 RNA U5 146 160 79.463221 226.118723 152.790972 2.184097694 0.200739 117 75 SH16609 16609 YFL034C-B_6_63992_63015_INTRON_21_134 intron 30.017413 194.486869 30.017413 165.469456 97.7434345 1.990087595 -0.065772 117 76 SH12235 12235 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.058058 204.519379 30.058058 175.461321 102.7596895 2.011822783 -0.121578 117 77 SH9426 9426 RUF2 5' 28.181468 138.930173 83.5558205 1.921976708 -0.058368 117 78 SH21208 21208 YOR096W spliced 33.881155 191.779676 112.8304155 2.052426187 -0.071221 117 79 SH20150 20150 YDL115C spliced 326.310495 532.748141 429.529318 2.632992812 0.155346 117 80 SH10598 10598 RUF8 RUF8 916 932 31.920369 174.176902 103.0486355 2.013042246 -0.001737 117 81 SH5801 5801 snR35 snR35 191 213 35.671553 216.941025 126.306289 2.101424975 -0.298184 117 82 SH7497 7497 snR71 3' 29.949762 150.652656 90.301209 1.955693565 0.00554 117 83 SH2381 2381 Phe4 5' flank 28.033853 153.978476 91.0061645 1.959070811 -0.149573 117 84 SH11128 11128 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2526 2539 138.479583 306.136591 222.308087 2.346955262 0.156221 117 85 SH10227 10227 RUF6 RUF6 981 998 28.005632 122.759698 75.382665 1.877271487 0.029635 117 86 SH16935 16935 YGR027C_7_534779_534126_INTRON_1_312 intron 27.992609 197.394704 27.992609 170.402095 99.197352 1.996500079 -0.234501 117 87 SH9337 9337 RUF1 RUF1 261 277 27.971254 158.821075 93.3961645 1.970329041 -0.179069 117 88 SH10199 10199 RUF6 RUF6 841 858 27.935579 139.730304 83.8329415 1.923414705 -0.0813 117 89 SH16046 16046 YDL191W_4_117665_118518_INTRON_4_494 intron 29.761089 168.895852 29.761089 140.134763 84.947926 1.92915278 0.049764 117 90 SH3337 3337 Thr3 tRNA 31 47 35.31466 178.124275 106.7194675 2.02824365 0.103066 117 91 SH16963 16963 YGR034W_7_555923_556666_INTRON_20_496 exon/intron 35.209387 227.828349 35.209387 193.618962 114.4141745 2.058479832 -0.05745 117 92 SH17594 17594 YJL191W_10_73786_74610_INTRON_11_418 intron 49.122022 275.008978 49.122022 226.886956 138.004489 2.139893213 -0.19423 117 93 SH17414 17414 YIL106W_9_166412_167441_INTRON_21_105 intron/exon 31.280355 193.070769 31.280355 162.790414 97.0353845 1.986930131 0.02909 117 94 SH20030 20030 YBR181C spliced 33.069483 181.656876 107.3631795 2.030855364 -0.008762 117 95 SH7083 7083 snR63 5' 32.10907 167.672342 99.890706 1.999525083 0.04795 117 96 SH2229 2229 Phe1 tRNA 21 33 35.831967 172.088404 103.9601855 2.016867046 0.178658 117 97 SH4428 4428 telomerase RNA telomerase 1176 1197 25.683128 109.294813 67.4889705 1.829232803 -0.05097 117 98 SH14104 14104 MT COB Cytbi4 31.350964 209.834137 31.350964 179.483173 105.4170685 2.022910935 -0.065875 117 99 SH4603 4603 snR3 5' 29.614496 129.120376 79.367436 1.89964235 0.103158 117 100 SH18483 18483 YMR194W_13_651144_651909_INTRON_17_479 5' exon 650.154366 1570.169681 650.154366 921.015315 785.5848405 2.895193094 0.108949 117 101 SH16115 16115 YDR064W_4_579453_580447_INTRON_22_560 intron 39.417812 198.437262 39.417812 160.01945 99.718631 1.998776308 0.415614 117 102 SH8802 8802 LSR1 / U2 RNA U2 651 667 30.091094 197.820417 113.9557555 2.056736265 -0.265663 117 103 SH20781 20781 YKL006W spliced 32.168814 162.616583 97.3926985 1.988526399 0.082532 117 104 SH9813 9813 RUF4 3' 30.386729 163.233608 96.8101685 1.985920976 -0.029374 118 2 SH19011 19011 YOR182C_15_678792_678190_INTRON_4_414 intron 33.536445 206.520571 33.536445 173.984126 103.7602855 2.016031158 0.080859 118 3 SH13745 13745 MT COB Exon1 29.207527 171.903535 29.207527 143.696008 86.4517675 1.936773877 -0.009335 118 4 SH16530 16530 YER131W_5_423587_424307_INTRON_1_361 intron 31.256619 195.519171 31.256619 165.262552 98.2595855 1.992374928 0.012358 118 5 SH19146 19146 YPL075W_16_412249_415357_INTRON_9_759 intron 33.289456 202.169841 33.289456 169.880385 101.5849205 2.006829245 0.102147 118 6 SH18453 18453 YMR143W_13_551927_552902_INTRON_25_568 intron 29.008638 205.961048 29.008638 177.95241 103.480524 2.014858619 -0.202333 118 7 SH17259 17259 YHR101C_8_315970_314876_INTRON_111_197 intron 31.029996 219.064008 31.029996 189.034012 110.032004 2.041519023 -0.152191 118 8 SH9784 9784 RUF4 RUF4 696 717 28.868268 143.016776 85.942522 1.934208094 -0.030249 118 9 SH21651 21651 copy of SH8771 32.963197 170.792023 101.87761 2.008078748 0.078297 118 10 SH2184 2184 Met2 tRNA 51 65 84.08434 224.030896 154.057618 2.187683179 0.269373 118 11 SH13485 13485 MT COX1 intronic 28.689502 203.195355 28.689502 175.505853 102.0976775 2.009015863 -0.208948 118 12 SH8617 8617 snR19 / U1 RNA U1 581 597 30.715728 150.653655 90.6846915 1.95753398 0.057943 118 13 SH16856 16856 YGL183C_7_157071_156547_INTRON_4_86 3' exon 86.816007 356.330897 86.816007 270.51489 178.6654485 2.252040574 -0.072122 118 14 SH3153 3153 Ser4 3' flank 30.637 139.278325 84.9576625 1.929202555 0.115632 118 15 SH7126 7126 snR63 snR63 136 150 34.709513 165.534777 100.122145 2.000530145 0.206051 118 16 SH10035 10035 RUF6 RUF6 21 40 28.461948 149.177666 88.819807 1.948509825 -0.092971 118 17 SH14388 14388 MT 21S rRNA 5' 28.373891 166.660859 28.373891 139.286968 83.8304295 1.923401691 -0.046035 118 18 SH17460 17460 YIL148W_9_68708_69528_INTRON_9_442 intron 30.304374 208.352709 30.304374 179.048335 104.6763545 2.019848589 -0.126882 118 19 SH787 787 Glu1 5' flank 32.203553 180.292225 106.247889 2.02632031 -0.027823 118 20 SH13468 13468 MT COX1 intronic 30.033811 198.291637 30.033811 169.257826 99.6458185 1.998459079 -0.086515 118 21 SH11808 11808 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5926 5945 171.67384 358.252955 264.9633975 2.423185884 0.097257 118 22 SH17301 17301 YHR203C_8_505526_504472_INTRON_15_283 5' exon 47.923603 253.435686 47.923603 206.512083 127.217843 2.104548028 -0.00387 118 23 SH8118 8118 snoRNA cluster 3; 5'/snR41 29.734215 188.166051 29.734215 159.431836 94.5830255 1.975813202 -0.055333 118 24 SH4916 4916 snR9 5' - 2 2 27.691818 161.184986 94.438402 1.97514863 -0.211874 118 25 SH4387 4387 telomerase RNA telomerase 971 988 27.670365 186.305131 106.987748 2.029334046 -0.337231 118 26 SH11242 11242 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3096 3109 260.269279 538.210868 399.2400735 2.601234127 -0.134133 118 27 SH9724 9724 RUF4 RUF4 396 408 33.619973 155.422198 94.5210855 1.975528701 0.210988 118 28 SH159 159 Arg2 5' flank 33.568926 171.123014 102.34597 2.010070746 0.109999 118 29 SH16474 16474 YER102W_5_362729_363698_INTRON_1_360 intron 31.499332 205.161627 31.499332 174.662295 103.0808135 2.013177837 -0.029386 118 30 SH8214 8214 snoRNA cluster 3; snR51 63.24866 301.727385 63.24866 239.478725 151.3636925 2.180021714 -0.111668 118 31 SH6753 6753 snR50 5' 33.253825 166.133153 99.693489 1.998666795 0.122807 118 32 SH12901 12901 MT COX1 intronic/exon2 35.086872 182.149197 35.086872 148.062325 91.5745985 1.961775023 0.340112 118 33 SH9494 9494 RUF2 3' 32.986521 144.70768 88.8471005 1.948643259 0.238582 118 34 SH19556 19556 CBP1 2.2 27.991206 125.631848 76.811527 1.885426399 0.009409 118 35 SH11032 11032 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2046 2059 10104.60945 6374.29471 8239.452081 3.915898332 0.606425 118 36 SH4869 4869 snR8 snR8 126 140 38.581573 179.695363 109.138468 2.037977853 0.169794 118 37 SH14895 14895 MT tRNA Ile 5' / tRNA 30.780728 222.643241 30.780728 192.862513 111.8216205 2.048525782 -0.195688 118 38 SH12627 12627 MT_15S MT_15S 28.859527 177.087084 28.859527 149.227557 89.043542 1.949602427 -0.064015 118 39 SH14952 14952 MT tRNA Met tRNA 32.807853 195.580898 32.807853 163.773045 98.290449 1.992511319 0.112103 118 40 SH18548 18548 YMR230W_13_732413_733140_INTRON_53_462 intron 32.885009 199.011693 32.885009 167.126684 100.0058465 2.00002539 0.0959 118 41 SH6011 6011 snR37 5' 27.096961 135.992843 81.544902 1.911396815 -0.123043 118 42 SH14857 14857 MT tRNA Ser2; tRNA Arg2 tRNA Ser 36.991246 230.435445 36.991246 194.444199 115.7177225 2.063399877 -0.031785 118 43 SH1995 1995 Lys3 5' flank 43.000863 204.055359 123.528111 2.0917658 -0.045823 118 44 SH15241 15241 MT tRNA fMet 5' 27.287851 182.797348 27.287851 156.509497 91.898674 1.963309245 -0.219083 118 45 SH8262 8262 snoRNA cluster4 5'/snR67 33.260811 202.561522 33.260811 170.300711 101.780761 2.007665694 0.098027 118 46 SH17870 17870 YLL050C_12_40413_39803_INTRON_15_193 intron 54.161747 283.021748 54.161747 229.860001 142.010874 2.1523216 -0.149966 118 47 SH8423 8423 snoRNA cluster 5 snR190/intergenic 39.310376 191.623649 39.310376 153.313273 96.3118245 1.98367961 0.484588 118 48 SH4209 4209 telomerase RNA telomerase 81 97 31.415476 139.642953 85.5292145 1.932114483 0.166172 118 49 SH5078 5078 snR11 5' - 9 -9 9 89.447889 268.717607 179.082748 2.25305375 -0.030807 118 50 SH21661 21661 copy of SH9191 27.519694 111.608135 69.5639145 1.842384013 0.073009 118 51 SH12284 12284 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.538591 181.179808 29.538591 152.641217 91.089904 1.959470244 -0.033772 118 52 SH20346 20346 YER102W spliced 59.557691 225.122916 142.3403035 2.153327888 -0.032729 118 53 SH19499 19499 YPT1 35.566551 216.957345 126.261948 2.101272485 -0.300125 118 54 SH2709 2709 Pro5 5' flank 31.590456 177.360045 104.4752505 2.019013421 -0.039559 118 55 SH11292 11292 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3346 3364 35.595629 173.268924 104.4322765 2.018834745 0.159195 118 56 SH17261 17261 YHR101C_8_315970_314876_INTRON_111_197 intron 33.609128 243.95502 33.609128 211.345892 122.47751 2.088056348 -0.281151 118 57 SH1971 1971 Lys2 tRNA 56 68 37.616527 209.135848 123.3761875 2.091231346 -0.182587 118 58 SH14567 14567 MT 21S rRNA 21S rRNA3 53.654795 274.763574 53.654795 222.108779 137.881787 2.139506903 -0.084154 118 59 SH9487 9487 RUF2 3' 27.625447 116.388601 72.007024 1.857374862 0.045847 118 60 SH7162 7162 snR63 3' 33.582049 173.264067 103.423058 2.014617375 0.089485 118 61 SH13588 13588 MT COX1 3' 27.551241 189.947596 27.551241 163.396355 95.473798 1.979884199 -0.233475 118 62 SH20251 20251 YDR381C-A spliced 29.455843 154.40108 91.9284615 1.963449992 -0.04888 118 63 SH10988 10988 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1826 1841 4353.74937 1140.89908 2747.324225 3.438909916 2.233286 118 64 SH17390 17390 YIL069C_9_232366_231550_INTRON_4_412 intron 52.857629 272.830916 52.857629 220.973287 136.915458 2.136452484 -0.084613 118 65 SH8479 8479 snoRNA cluster 5 3' 30.965568 219.620877 30.965568 189.655309 110.3104385 2.042616611 -0.160218 118 66 SH19414 19414 YPR132W_16_794960_795762_INTRON_66_430 5' exon 33.674179 218.895715 33.674179 186.221536 109.9478575 2.041186771 -0.028933 118 67 SH2524 2524 Pro1 3' flank 34.410045 137.695582 86.0528135 1.934765074 0.3665 118 68 SH3604 3604 Val1 tRNA 16 31 70.80887 204.49593 137.6524 2.138783788 0.307286 118 69 SH19475 19475 ADH1 32.093693 159.069767 95.58173 1.980374887 0.100566 118 70 SH7948 7948 snoRNA cluster1 3' 385.650197 947.244281 385.650197 562.594084 474.1221405 2.675890236 0.267371 118 71 SH17179 17179 YHR021C_8_148660_147862_INTRON_4_553 intron 85.286428 368.109213 85.286428 283.822785 184.5546065 2.26612489 -0.181897 118 72 SH20847 20847 YLR048W spliced 37.564653 180.696826 109.1307395 2.037947098 0.138792 118 73 SH16097 16097 YDR059C_4_569765_569229_INTRON_48_137 exon/intron 265.687732 723.254343 265.687732 458.566611 362.1271715 2.558861112 0.161723 118 74 SH12694 12694 MT ORF 8 (hypothetical) 5' / ORF8 26.267319 143.34529 26.267319 118.077971 72.172645 1.858372622 -0.069545 118 75 SH19870 19870 Negative Control 33.929075 191.43549 112.6822825 2.051855636 -0.066497 118 76 SH21564 21564 copy of SH5224 28.269871 131.423758 79.8468145 1.902257595 -0.00757 118 77 SH14891 14891 MT tRNA Ile 5' 30.207437 197.049793 30.207437 167.842356 99.0248965 1.995744397 -0.067206 118 78 SH7447 7447 snR69 3' 33.080843 164.82345 98.9521465 1.995425219 0.121098 118 79 SH14825 14825 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly 32.115747 198.118373 32.115747 167.002626 99.5591865 1.998081339 0.052405 118 80 SH2592 2592 Pro3 5' flank 30.186576 196.989857 113.5882165 2.055333281 -0.254769 118 81 SH20755 20755 YJR094W-A spliced 43.527293 210.241979 126.884636 2.103409038 -0.10529 118 82 SH18093 18093 YLR367W_12_855877_857316_INTRON_698_1180 intron 28.244042 148.00989 28.244042 120.765848 74.504945 1.872185098 0.06064 118 83 SH5183 5183 snR13 snR13 71 87 57.851143 217.2848 137.5679715 2.138517333 0.019683 118 84 SH17230 17230 YHR077C_8_255757_252375_INTRON_7_119 intron 32.045578 184.098396 32.045578 153.052818 92.549198 1.96637266 0.133104 118 85 SH11545 11545 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4611 4626 8861.609966 4171.299082 6516.454524 3.814011369 1.111296 118 86 SH17704 17704 YKL081W_11_282533_284097_INTRON_206_531 intron 30.138442 176.911345 30.138442 147.772903 88.9556725 1.949173647 0.034208 118 87 SH12287 12287 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 41.551735 231.074005 41.551735 190.52227 116.0370025 2.064596501 0.090144 118 88 SH21572 21572 copy of SH5387 41.492546 192.6757 117.084123 2.068498007 0.063604 118 89 SH1133 1133 Gly4 3' flank 45.205135 192.864476 119.0348055 2.075673967 0.112848 118 90 SH11152 11152 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2646 2663 24025.97417 6867.534218 15446.75419 4.188837236 1.608619 118 91 SH12488 12488 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 27.940533 136.577947 27.940533 109.637414 68.7889735 1.837518829 0.119003 118 92 SH16294 16294 YDR450W_4_1359912_1360787_INTRON_48_482 intron 31.598727 225.80938 31.598727 195.210653 113.40469 2.054631016 -0.184689 118 93 SH13950 13950 MT COB Cytbi3 31.503051 186.003278 31.503051 155.500227 93.501639 1.970819224 0.084817 118 94 SH20417 20417 YGL030W spliced 37.042536 186.903515 111.9730255 2.049113413 0.055337 118 95 SH2733 2733 Pro5 tRNA-intron 46 61 63.254883 205.478356 134.3666195 2.128291391 0.206253 118 96 SH17882 17882 YLR048W_12_242233_243350_INTRON_91_449 intron 64.225318 309.01143 64.225318 245.786112 155.005715 2.190347711 -0.151454 118 97 SH15021 15021 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.732844 198.310075 27.732844 171.577231 99.6550375 1.998499257 -0.259417 118 98 SH4686 4686 snR4 5' 27.819686 125.048743 76.4342145 1.883287807 0.000624 118 99 SH6935 6935 snR58 snR58 36 52 33.59165 199.762281 116.6769655 2.066985126 -0.158755 118 100 SH17554 17554 YJL189W_10_75932_76473_INTRON_7_392 intron 31.85952 219.738449 31.85952 188.878929 110.3692245 2.042847991 -0.119202 118 101 SH12331 12331 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.024292 213.031863 32.024292 182.007571 107.0159315 2.029448436 -0.050489 118 102 SH3770 3770 Val4 3' flank 26.434167 122.291698 74.3629325 1.871356508 -0.085846 118 103 SH7362 7362 snR68 snR68 31 45 992.713718 824.300065 908.5068915 2.958328226 0.824394 118 104 SH904 904 Glu3 tRNA 31 43 66.819182 246.411761 156.6154715 2.194834662 -0.12283 119 2 SH20007 20007 YBR082C spliced 31.452792 179.168467 105.3106295 2.022472209 -0.05803 119 3 SH5256 5256 snR30 snR30 131 145 37.761732 209.99885 123.880291 2.093002217 -0.189685 119 4 SH10906 10906 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1416 1434 48622.84458 41196.38765 44909.61611 4.652339343 -0.323413 119 5 SH5962 5962 snR36 snR36 266 285 33.331456 145.561926 89.446691 1.951564279 0.255403 119 6 SH5985 5985 snR36 3' 31.149937 161.076834 96.1133855 1.982783875 0.032031 119 7 SH20568 20568 YHR010W spliced 37.37582 149.290427 93.3331235 1.9700358 0.449859 119 8 SH406 406 Asn1 3' flank 28.927786 168.101633 98.5147095 1.993501081 -0.155292 119 9 SH6520 6520 snR46 snR46 91 108 90.890251 264.051746 177.4709985 2.249127393 0.018287 119 10 SH12983 12983 MT COX1 COX1ai2 28.826179 184.785709 28.826179 156.95953 92.8928545 1.967982308 -0.107037 119 11 SH12479 12479 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 125.612681 434.62284 125.612681 310.010159 217.81142 2.338080646 0.032464 119 12 SH9473 9473 RUF2 RUF2 206 224 28.745299 139.236819 83.991059 1.924233057 -0.018365 119 13 SH9629 9629 RUF4 5' 30.777222 178.629586 104.703404 2.019960801 -0.09556 119 14 SH10604 10604 RUF8 946-951 + 3' 946 41.087268 152.210396 96.648832 1.98519661 0.549731 119 15 SH13834 13834 MT COB Cytbi2 30.653123 207.160051 30.653123 177.506928 104.0800255 2.01736739 -0.096707 119 16 SH6589 6589 snR47 snR47 51 70 781.961839 1110.665791 946.313815 2.97603518 0.03975 119 17 SH15113 15113 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF3 exon3 30.432238 176.516329 30.432238 147.084091 88.7581645 1.948208313 0.058125 119 18 SH3606 3606 Val1 tRNA 26 41 69.22649 194.788205 132.0073475 2.120598105 0.389535 119 19 SH16495 16495 YER117W_5_396765_397649_INTRON_43_513 intron 43.337478 247.114027 43.337478 204.776549 124.0570135 2.093621322 -0.048805 119 20 SH2511 2511 Pro1 tRNA 46 58 377.98058 523.158663 450.5696215 2.653761907 0.363996 119 21 SH8054 8054 snoRNA cluster 2 intergenic 32.838888 211.369934 32.838888 179.531046 106.184967 2.026063036 0.00272 119 22 SH10324 10324 RUF7 RUF7 231 247 29.716254 164.278138 96.997196 1.98675918 -0.080845 119 23 SH10813 10813 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 951 972 157.33299 379.711645 268.5223175 2.428980387 -0.102394 119 24 SH2900 2900 Pro8 tRNA 21 36 89.876691 207.011265 148.443978 2.171562584 0.486369 119 25 SH18346 18346 YML124C_13_23684_22049_INTRON_26_323 intron 31.613303 208.653161 31.613303 178.039858 104.8265805 2.020471419 -0.042094 119 26 SH10937 10937 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1571 1584 373.821397 744.366861 559.094129 2.747484932 -0.234842 119 27 SH275 275 Arg4 5' flank 28.644072 148.449626 88.546849 1.947173111 -0.075724 119 28 SH18303 18303 YML073C_13_124172_123227_INTRON_16_430 intron 31.634397 211.559067 31.634397 180.92467 106.2795335 2.026449639 -0.057178 119 29 SH7007 7007 snR60 3' 29.608519 187.167449 108.387984 2.034981139 -0.215365 119 30 SH13711 13711 MT tRNAGlu (and 5' processing site for COB) 3' 29.55355 202.728226 29.55355 174.174676 101.864113 2.008021208 -0.145743 119 31 SH2907 2907 Pro8 tRNA 56 71 280.394759 621.624817 451.009788 2.654185967 -0.28665 119 32 SH20516 20516 YGR029W spliced 33.345937 173.154883 103.25041 2.013891785 0.082096 119 33 SH10365 10365 RUF7 RUF7 436 452 35.2121 177.471083 106.3415915 2.026703156 0.105781 119 34 SH14752 14752 MT ORF11; tRNA Leu; tRNA Gln ORF11 33.13075 218.055916 33.13075 185.925166 109.527958 2.039524991 -0.045735 119 35 SH12826 12826 MT COX1 COX1ai1 36.972421 245.78737 36.972421 209.814949 123.393685 2.091292934 -0.200361 119 36 SH14979 14979 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 31.015627 198.28144 31.015627 168.265813 99.64072 1.998436857 -0.020409 119 37 SH3759 3759 Val4 tRNA 21 33 32.93966 163.599535 98.2695975 1.992419177 0.120676 119 38 SH19199 19199 YPL081W_16_404945_406039_INTRON_8_508 intron 29.021057 182.220485 29.021057 154.199428 91.6102425 1.961944033 -0.078683 119 39 SH7066 7066 snR62 3' 40.806296 175.700248 108.253272 2.034441032 0.258424 119 40 SH16041 16041 YDL191W_4_117665_118518_INTRON_4_494 intron 29.082364 169.791893 29.082364 141.709529 85.3959465 1.931437256 -0.007531 119 41 SH1200 1200 Ile1 5' flank 29.134085 135.200882 82.1674835 1.914699986 0.032852 119 42 SH5222 5222 snR30 5' 27.223299 138.98063 83.1019645 1.91961129 -0.131487 119 43 SH10684 10684 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 306 322 27.272184 154.962288 91.117236 1.959600537 -0.21255 119 44 SH15742 15742 YCR028C-A_3_173432_172942_INTRON_243_325 intron 28.301283 163.863463 28.301283 136.56218 82.4317315 1.916094422 -0.036035 119 45 SH14634 14634 MT 21S rRNA Sce1 endonuc 27.351692 167.652816 27.351692 141.301124 84.326408 1.925963601 -0.134498 119 46 SH2029 2029 Lys3 91-96 + 3' flank 91 108 33.319943 133.538922 83.4294325 1.921319289 0.324522 119 47 SH478 478 Asp2 5' flank 33.354524 183.565051 108.4597875 2.035268749 -0.016113 119 48 SH6234 6234 snR42 5' 37.359007 185.020882 111.1899445 2.046065513 0.083405 119 49 SH15042 15042 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.446399 192.888784 29.446399 164.442385 96.944392 1.986522691 -0.100587 119 50 SH712 712 Gln3 3' flank 27.485052 125.756164 76.620608 1.884345594 -0.02894 119 51 SH2856 2856 Pro7 tRNA 86 100 33.464248 150.758006 92.111127 1.964312096 0.233266 119 52 SH13171 13171 MT COX1 intronic 27.515262 181.150394 27.515262 154.635132 91.075197 1.959400119 -0.192214 119 53 SH19540 19540 CBP1 1.2 31.500401 158.608928 95.0546645 1.977973433 0.068608 119 54 SH3132 3132 Ser4 tRNA 66 80 29.520611 135.872125 82.696368 1.917486436 0.05675 119 55 SH15935 15935 YDL115C_4_255042_253994_INTRON_1_88 intron 33.512783 200.012979 33.512783 167.500196 100.5064895 2.002194104 0.128982 119 56 SH2967 2967 Ser1 tRNA 66 78 35.523104 187.570928 111.547016 2.047457957 0.017942 119 57 SH11422 11422 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3996 4013 1377.48658 1158.96997 1268.228275 3.103197432 0.698932 119 58 SH4585 4585 U3b (snR17b) 3' 29.579487 164.230683 96.905085 1.986346567 -0.090184 119 59 SH3881 3881 RNaseP 3' 31.578059 165.320532 98.4492955 1.993212613 0.031128 119 60 SH10732 10732 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 546 559 31.562567 166.94998 99.2562735 1.996757966 0.020245 119 61 SH4409 4409 telomerase RNA telomerase 1081 1100 27.539103 125.939646 76.7393745 1.885018255 -0.026108 119 62 SH6052 6052 snR37 snR37 176 194 47.349427 180.659223 114.004325 2.056921328 0.290008 119 63 SH20551 20551 YGR225W spliced 27.360779 146.216489 86.788634 1.938462853 -0.160447 119 64 SH839 839 Glu2 5' flank 33.122786 169.042329 101.0825575 2.004676222 0.097788 119 65 SH19987 19987 YBL092W spliced 36.840261 203.356473 120.098367 2.079537102 -0.132282 119 66 SH3791 3791 RNaseP 5' flank 30.764331 165.916683 98.340507 1.992732443 -0.021333 119 67 SH4229 4229 telomerase RNA telomerase 181 198 30.559237 152.926855 91.743046 1.962573155 0.03521 119 68 SH1169 1169 His1 66-72 + 3' flank 66 29.411719 127.873655 78.642687 1.895658344 0.096561 119 69 SH3780 3780 Val4 3' flank 28.308151 165.702099 97.005125 1.98679468 -0.188581 119 70 SH13169 13169 MT COX1 intronic 39.630509 232.483448 39.630509 193.852939 116.741724 2.067226103 0.022128 119 71 SH19670 19670 SIR1 2.4 1308.903432 1384.88572 1346.894576 3.129333604 0.349952 119 72 SH1876 1876 Leu9 3' flank 30.05563 132.175593 81.1156115 1.909104447 0.116074 119 73 SH7118 7118 snR63 snR63 96 117 30.097383 161.822249 95.959816 1.982089407 -0.042195 119 74 SH4023 4023 SRP RNA SRP RNA 6 22 33.976925 191.320876 112.6489005 2.051726957 -0.063798 119 75 SH8130 8130 snoRNA cluster 3; snR41 28.330567 191.723208 28.330567 164.392641 96.361604 1.98390402 -0.180511 119 76 SH12483 12483 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 30.305551 173.615522 30.305551 144.309971 87.307761 1.941052851 0.064892 119 77 SH9455 9455 RUF2 RUF2 116 133 28.43667 144.076078 86.256374 1.935791198 -0.067725 119 78 SH9713 9713 RUF4 RUF4 341 359 30.378317 149.704414 90.0413655 1.954442073 0.04014 119 79 SH10538 10538 RUF8 RUF8 616 633 34.226437 192.588698 113.4075675 2.054642035 -0.066178 119 80 SH19780 19780 Negative Control 59.279439 230.374608 144.8270235 2.160849605 -0.084283 119 81 SH21926 21926 copy of SH20401 34.222166 179.695386 106.958776 2.029216424 0.050603 119 82 SH21463 21463 copy of SH809 32.30551 147.507476 89.906493 1.953791057 0.179765 119 83 SH4797 4797 snR5 snR5 156 177 30.397488 159.153937 94.7757125 1.976697058 -0.008136 119 84 SH11352 11352 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3646 3661 18061.58621 15272.1183 16666.85225 4.221853586 -0.032089 119 85 SH728 728 Gln4 5' flank 45.839379 194.659251 120.249315 2.080082611 0.100862 119 86 SH21504 21504 copy of SH2796 133.260797 296.146029 214.703413 2.331838948 0.178037 119 87 SH11676 11676 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5266 5279 453.729401 296.55758 375.1434905 2.574197415 1.537409 119 88 SH13346 13346 MT COX1 COX1-ai5a 28.443221 176.082502 28.443221 148.639281 88.541251 1.947145654 -0.091539 119 89 SH10611 10611 RUF8 3' 34.111815 149.05654 91.5841775 1.961820449 0.280627 119 90 SH7386 7386 snR68 3' 37.820304 173.49589 105.658097 2.023902784 0.229608 119 91 SH10494 10494 RUF8 RUF8 396 414 41.490172 194.860866 118.175519 2.072527518 0.037798 119 92 SH9409 9409 RUF1 3' 28.073772 103.33084 65.702306 1.817580613 0.178232 119 93 SH18944 18944 YOL127W_15_80347_81189_INTRON_14_427 intron 31.755837 227.911266 31.755837 197.155429 114.455633 2.058637172 -0.195476 119 94 SH16311 16311 YDR450W_4_1359912_1360787_INTRON_48_482 3' exon 31.682631 206.649479 31.682631 175.966848 103.8247395 2.01630085 -0.0261 119 95 SH18185 18185 YML024W_13_225889_226697_INTRON_4_401 5' exon 30.708391 207.389092 30.708391 177.680701 104.194546 2.017844987 -0.094334 119 96 SH19580 19580 AEP2/ATP13 0.6 30.718979 165.21728 97.9681295 1.991084816 -0.019799 119 97 SH17467 17467 YIL148W_9_68708_69528_INTRON_9_442 intron 29.830738 181.416934 29.830738 152.586196 91.208467 1.960035156 -0.013055 119 98 SH1067 1067 Gly3 71 + 3' flank 71 28.030268 116.05801 72.044139 1.857598655 0.078049 119 99 SH11503 11503 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4401 4417 12815.77414 10289.85271 11552.81342 4.06268776 0.151845 119 100 SH9517 9517 RUF3 5' 32.083061 139.792796 85.9379285 1.934184881 0.208942 119 101 SH9562 9562 RUF3 RUF3 196 212 28.397267 144.503617 86.450442 1.936767218 -0.072954 119 102 SH2799 2799 Pro6 tRNA 86 100 36.254806 178.179523 107.2171645 2.030264318 0.134017 119 103 SH16237 16237 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 141.650346 501.462071 141.650346 360.811725 251.2310355 2.400073288 -0.122476 119 104 SH18376 18376 YMR116C_13_500687_499455_INTRON_538_810 5' exon 32.648164 197.118728 32.648164 165.470564 99.059364 1.995895535 0.092505 120 2 SH11090 11090 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2336 2349 298.450008 535.720418 417.085213 2.620224793 0.038214 120 3 SH1832 1832 Leu9 5' flank 31.405746 180.780746 106.093246 2.025687737 -0.06993 120 4 SH15738 15738 YCR028C-A_3_173432_172942_INTRON_243_325 5' exon 31.326363 192.804297 31.326363 162.477934 96.9021485 1.986333406 0.033789 120 5 SH17122 17122 YHR010W_8_126513_127484_INTRON_32_592 intron 29.143667 192.055996 29.143667 163.912329 96.527998 1.984653299 -0.119417 120 6 SH20017 20017 YBR089C-A spliced 33.293524 194.613258 113.953391 2.056727253 -0.11693 120 7 SH6345 6345 snR43 5' 31.132087 166.683277 98.907682 1.995230024 -0.003802 120 8 SH3633 3633 Val2 5' flank 31.08466 153.940119 92.5123895 1.966199898 0.065239 120 9 SH7502 7502 snR71 3' 28.954242 153.401246 91.177744 1.959888842 -0.079262 120 10 SH18445 18445 YMR142C_13_551206_550205_INTRON_5_406 intron 37.285755 244.623448 37.285755 208.337693 122.811724 2.089239828 -0.179149 120 11 SH19041 19041 YOR234C_15_779404_778554_INTRON_20_546 intron 30.981171 189.9521 30.981171 159.970929 95.47605 1.979894443 0.027188 120 12 SH21499 21499 copy of SH2549 30.947244 174.860444 102.903844 2.012431598 -0.063594 120 13 SH2441 2441 Phe5 5' flank 41.325735 207.148651 124.237193 2.09425163 -0.10433 120 14 SH680 680 Gln3 5' flank 32.916625 188.601357 110.758991 2.044378991 -0.077618 120 15 SH4865 4865 snR8 snR8 106 121 39.04186 176.344872 107.693366 2.032188951 0.219175 120 16 SH11022 11022 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1996 2009 54950.41869 43217.74442 49084.08156 4.690940669 -0.240417 120 17 SH12945 12945 MT COX1 COX1ai2 32.522027 226.67103 32.522027 195.149003 113.835515 2.056277777 -0.149655 120 18 SH13112 13112 MT COX1 COX1ai3 40.506285 205.116907 40.506285 165.610622 103.0584535 2.013083621 0.382004 120 19 SH11452 11452 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4146 4164 24075.90647 16243.88858 20159.89752 4.30448832 0.242205 120 20 SH140 140 Arg1 3' flank 27.902502 126.633737 77.2681195 1.888000343 -0.003702 120 21 SH19938 19938 YBL027W spliced 49.864627 209.311579 129.588103 2.112565132 -0.006704 120 22 SH18916 18916 YOL120C_15_94401_93394_INTRON_113_559 3' exon 33.640742 204.718567 33.640742 172.077825 102.8592835 2.012243495 0.103169 120 23 SH15690 15690 YBR191W_2_606228_607098_INTRON_12_399 3' exon 29.576752 190.874681 29.576752 162.297929 95.9373405 1.981987675 -0.080786 120 24 SH11278 11278 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3276 3296 27.566133 132.873452 80.2197925 1.904281534 -0.068507 120 25 SH18816 18816 YNL302C_14_62942_61957_INTRON_21_571 intron 31.566453 217.878282 31.566453 187.311829 109.439141 2.039172676 -0.116214 120 26 SH10003 10003 RUF5-1 3' 29.61346 182.774865 106.1941625 2.026100644 -0.190925 120 27 SH9934 9934 RUF5-1 RUF5-1 476 495 27.661321 130.702934 79.1821275 1.898627166 -0.047768 120 28 SH5906 5906 snR36 5' - 3 -14 3 27.693639 174.306793 101.000216 2.004322303 -0.275139 120 29 SH4279 4279 telomerase RNA telomerase 431 448 29.706815 154.446977 92.076896 1.96415067 -0.031514 120 30 SH13622 13622 MT ATP6 ATP6 33.698309 210.524064 33.698309 177.825755 105.762032 2.024329786 0.049772 120 31 SH18749 18749 YNL162W_14_331319_332151_INTRON_5_516 intron 29.658461 164.600181 29.658461 135.94172 82.8000905 1.918030811 0.066163 120 32 SH2421 2421 Phe4 3' flank 31.595995 171.39858 101.4972875 2.006454436 -0.004494 120 33 SH17602 17602 YJL205C-A_10_50443_50139_INTRON_33_175 intron 31.520067 187.724978 31.520067 157.204911 94.362489 1.974799388 0.077106 120 34 SH15594 15594 YBR089C-A_2_426588_426148_INTRON_1_114 exon/intron 33.424093 194.527153 33.424093 162.10306 97.7635765 1.990177081 0.157304 120 35 SH16124 16124 YDR064W_4_579453_580447_INTRON_22_560 intron 35.321907 223.78481 35.321907 189.462903 112.392405 2.050736964 -0.007934 120 36 SH1215 1215 Ile1 tRNA 36 50 354.209068 579.780048 466.994558 2.66931182 0.113393 120 37 SH9486 9486 RUF2 3' 30.251034 133.61102 81.931027 1.913448399 0.121305 120 38 SH18527 18527 YMR225C_13_721402_720959_INTRON_59_205 intron 33.181634 228.475349 33.181634 196.293715 114.7376745 2.059706043 -0.135471 120 39 SH14008 14008 MT COB intronic 31.204403 221.967729 31.204403 191.763326 111.4838645 2.047212015 -0.169667 120 40 SH7219 7219 snR64 3' 32.205744 153.93968 93.072712 1.968822369 0.13877 120 41 SH16870 16870 YGL187C_7_150529_149708_INTRON_1_342 intron 30.261708 227.053746 30.261708 197.792038 114.026873 2.057007215 -0.258648 120 42 SH6618 6618 snR48 5' 31.283947 129.806579 80.545263 1.906040004 0.214528 120 43 SH21319 21319 YPL249C-A spliced 31.319274 169.776365 100.5478195 2.002372657 -0.011277 120 44 SH20535 20535 YGR148C spliced 43.252359 208.645713 125.949036 2.100194848 -0.092169 120 45 SH13290 13290 MT COX1 COX1-ai5a 31.37407 225.837739 31.37407 195.463669 113.4188695 2.054685314 -0.195422 120 46 SH755 755 Gln4 tRNA 46 58 43.310561 173.239182 108.2748715 2.034527677 0.331284 120 47 SH7136 7136 snR63 snR63 186 202 652.090381 1186.735574 919.4129775 2.96351063 -0.298052 120 48 SH7686 7686 snoRNA cluster1 intergenic 31.413433 257.775348 31.413433 227.361915 129.387674 2.111892906 -0.48804 120 49 SH17692 17692 YKL006W_11_431544_432358_INTRON_130_527 intron 31.418591 208.830976 31.418591 178.412385 104.915488 2.020839605 -0.055768 120 50 SH11840 11840 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6086 6101 367.466103 774.779574 571.1228385 2.756729527 -0.322053 120 51 SH7292 7292 snR66 5' 29.433613 153.160545 91.297079 1.960456883 -0.043912 120 52 SH312 312 Arg4 3' flank 32.404357 212.520021 122.462189 2.088002018 -0.319044 120 53 SH7807 7807 snoRNA cluster1 intergenic 31.408151 185.143162 31.408151 154.735011 93.071581 1.968817091 0.082553 120 54 SH17140 17140 YHR010W_8_126513_127484_INTRON_32_592 intron 31.409331 217.43465 31.409331 187.025319 109.217325 2.038291535 -0.119609 120 55 SH3087 3087 Ser3 3' flank 30.42791 160.050144 95.239027 1.97881495 -0.010609 120 56 SH11999 11999 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6881 6899 49.356399 268.862848 159.1096235 2.201696448 -0.553461 120 57 SH11867 11867 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6221 6238 1561.819185 1602.8102 1582.314693 3.199292861 0.349551 120 58 SH10825 10825 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1011 1030 105.409968 244.912579 175.1612735 2.243438094 0.304839 120 59 SH18632 18632 YNL096C_14_444312_443395_INTRON_145_489 intron 29.538094 218.632814 29.538094 190.09472 109.816407 2.04066723 -0.235584 120 60 SH8585 8585 snR19 / U1 RNA U1 421 438 37.510817 179.030873 108.270845 2.034511526 0.15795 120 61 SH9615 9615 RUF3 3' 31.502772 178.253779 104.8782755 2.020685538 -0.049862 120 62 SH16461 16461 YER093C-A_5_348396_347908_INTRON_125_199 5' exon 33.419877 184.359936 33.419877 151.940059 92.679968 1.966985875 0.222851 120 63 SH5352 5352 snR30 3' 29.346029 170.909234 100.1276315 2.000553943 -0.139687 120 64 SH9978 9978 RUF5-1 RUF5-1 696 715 31.173279 200.355622 115.7644505 2.063575215 -0.244827 120 65 SH10243 10243 RUF6 3' 30.992253 136.281793 83.637023 1.922398566 0.156862 120 66 SH9429 9429 RUF2 5' - 8 -14 8 32.738721 215.289151 124.013936 2.093470492 -0.339976 120 67 SH19393 19393 YPR043W_16_654161_654842_INTRON_3_405 intron/exon 34.460277 194.058909 34.460277 160.598632 97.5294545 1.989135795 0.22385 120 68 SH4105 4105 SRP RNA SRP RNA 416 428 36.178851 194.014744 115.0967975 2.06106324 -0.04268 120 69 SH14398 14398 MT 21S rRNA 21S rRNA3 28.354243 185.607258 28.354243 158.253015 93.303629 1.969898536 -0.147943 120 70 SH18133 18133 YLR406C_12_931752_931062_INTRON_58_406 exon/intron 32.073529 223.362895 32.073529 192.289366 112.1814475 2.049921039 -0.14138 120 71 SH21938 21938 copy of SH19621 33.933477 166.935045 100.434261 2.001881888 0.155736 120 72 SH6487 6487 snR46 5' 30.137431 158.377693 94.257562 1.974316202 -0.022006 120 73 SH645 645 Gln2 tRNA 11 28 30.19174 155.005306 92.598523 1.966604059 -0.000834 120 74 SH4792 4792 snR5 snR5 131 150 30.272754 162.285062 96.278908 1.983531156 -0.032452 120 75 SH10285 10285 RUF7 RUF7 36 53 32.280681 191.495068 111.8878745 2.048783024 -0.126683 120 76 SH17754 17754 YKL157W_11_154993_158183_INTRON_282_664 intron 30.446298 186.51768 30.446298 157.071382 93.75884 1.972012226 0.005864 120 77 SH6133 6133 snR39B snR39B 6 20 140.306274 296.701276 218.503775 2.339458944 0.22773 120 78 SH950 950 Gly1 tRNA 1 15 1357.454024 2086.62235 1722.038187 3.236042778 -0.249616 120 79 SH17685 17685 YKL006W_11_431544_432358_INTRON_130_527 intron 34.460085 232.758081 34.460085 199.297996 116.8790405 2.067736638 -0.135629 120 80 SH6439 6439 snR45 snR45 41 57 42.238338 203.021217 122.6297775 2.08859594 -0.045228 120 81 SH10778 10778 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 776 793 36.448524 197.222357 116.8354405 2.0675746 -0.073139 120 82 SH10983 10983 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1801 1821 127.563024 257.949189 192.7561065 2.285008145 0.392874 120 83 SH10168 10168 RUF6 RUF6 686 700 46.23909 196.606378 121.422734 2.084300007 0.083985 120 84 SH12386 12386 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.665087 200.290414 32.665087 168.625327 100.645207 2.002793097 0.074286 120 85 SH5920 5920 snR36 snR36 56 73 28.804277 155.263738 92.0340075 1.963948333 -0.099815 120 86 SH21309 21309 YPL241C spliced 43.397921 206.80857 125.1032455 2.097268577 -0.070136 120 87 SH18909 18909 YOL120C_15_94401_93394_INTRON_113_559 intron 30.725412 215.648824 30.725412 185.923412 108.324412 2.03472634 -0.13937 120 88 SH14141 14141 MT COB intronic 28.733699 204.021822 28.733699 176.288123 102.510911 2.010770093 -0.210589 120 89 SH7138 7138 snR63 snR63 196 213 42.193799 171.913878 107.0538385 2.029602244 0.329527 120 90 SH3238 3238 Thr1 tRNA 46 62 38.182517 165.475182 101.8288495 2.007870837 0.320898 120 91 SH4384 4384 telomerase RNA telomerase 956 973 32.271238 175.057072 103.664155 2.015628612 0.013578 120 92 SH390 390 Asn1 31-47 31 47 40.751514 180.518803 110.6351585 2.043893162 0.198549 120 93 SH719 719 Gln3 3' flank 111.226993 265.124445 188.175719 2.274563584 0.205116 120 94 SH21708 21708 copy of SH11083 21403.54912 17458.74399 19431.14655 4.288498427 -0.024903 120 95 SH8537 8537 snR19 / U1 RNA U1 181 202 31.914174 162.919534 97.416854 1.9886341 0.065784 120 96 SH9290 9290 RUF1 RUF1 26 42 31.919197 168.166198 100.0426975 2.000185393 0.033875 120 97 SH20648 20648 YIL004C spliced 31.968266 201.839121 116.9036935 2.067828233 -0.227108 120 98 SH1429 1429 Leu2 5' flank 30.14983 180.336345 105.2430875 2.02219358 -0.143722 120 99 SH1958 1958 Lys2 5' flank - tRNA9 9 32.172112 156.996605 94.5843585 1.975819323 0.118457 120 100 SH14387 14387 MT 21S rRNA 5' 30.383528 193.672458 30.383528 164.28893 97.336229 1.988274517 -0.034813 120 101 SH5251 5251 snR30 snR30 106 122 29.548204 144.906769 87.2274865 1.940653358 0.008549 120 102 SH798 798 Glu1 tRNA 6 22 2029.647991 2171.61548 2100.631736 3.322349922 0.218051 120 103 SH586 586 Gln1 5' flank 30.755304 140.085949 85.4206265 1.931562752 0.119243 120 104 SH3191 3191 Ser5 76-82 + 3' flank 76 30.852771 150.338466 90.5956185 1.957107194 0.068878 121 2 SH7523 7523 snR79 5' 29.367759 128.401512 78.8846355 1.896992423 0.09007 121 3 SH13240 13240 MT COX1 COX1-ai4 29.29206 191.218798 29.29206 162.926738 96.109399 1.982765861 -0.103991 121 4 SH10749 10749 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 631 646 33.460082 169.793129 101.6266055 2.00700742 0.112226 121 5 SH12680 12680 MT tRNA Trp tRNA 31.270567 207.809344 31.270567 177.538777 104.404672 2.018719933 -0.059609 121 6 SH2295 2295 Phe2 tRNA 71 87 75.709186 226.507091 151.1081385 2.179287856 0.154918 121 7 SH1407 1407 Leu1 106-115 + 3' flank 106 31.172764 157.730267 94.4515155 1.975208931 0.051409 121 8 SH11902 11902 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6396 6411 768.843458 534.258369 651.5509135 2.813948358 1.206927 121 9 SH18280 18280 YML056C_13_164176_162194_INTRON_461_868 3' exon 33.225621 194.101282 33.225621 161.875661 97.550641 1.989230127 0.147597 121 10 SH17813 17813 YKR057W_11_551293_551878_INTRON_25_346 intron 29.020994 220.930878 29.020994 192.909884 110.965439 2.045187736 -0.283536 121 11 SH14313 14313 MT VAR1 includes 5’ processing site VAR1 29.009796 184.546257 29.009796 156.536461 92.7731285 1.967422202 -0.091673 121 12 SH2551 2551 Pro2 5' flank - tRNA7 7 53.129245 233.163561 143.146403 2.155780439 -0.194917 121 13 SH3149 3149 Ser4 3' flank 33.130819 193.960904 113.5458615 2.05517131 -0.117133 121 14 SH9260 9260 snR6 / U6 RNA 3' 30.96744 142.160894 86.564167 1.937338154 0.121885 121 15 SH16190 16190 YDR367W_4_1212837_1213603_INTRON_31_131 3' exon 29.819192 193.643722 29.819192 164.82453 97.321861 1.988210405 -0.076358 121 16 SH7748 7748 snoRNA cluster1 intergenic/snR76 30.70899 196.422053 30.70899 166.713063 98.7110265 1.994365668 -0.029564 121 17 SH7839 7839 snoRNA cluster1 snR74 30.523559 205.289411 30.523559 175.765852 103.1447055 2.01344694 -0.094611 121 18 SH4262 4262 telomerase RNA telomerase 346 363 30.312941 166.865564 98.5892525 1.993829574 -0.054759 121 19 SH8134 8134 snoRNA cluster 3; snR41 33.136536 176.742052 33.136536 144.605516 88.871026 1.948760194 0.248571 121 20 SH17689 17689 YKL006W_11_431544_432358_INTRON_130_527 intron 27.875886 196.629001 27.875886 169.753115 98.8145005 1.99482068 -0.240082 121 21 SH14278 14278 MT VAR1 includes 5’ processing site VAR1 27.714155 178.273297 27.714155 151.559142 89.6366485 1.95248561 -0.161387 121 22 SH4606 4606 snR3 5' 29.589592 121.424214 75.506903 1.877986658 0.151851 121 23 SH9578 9578 RUF3 RUF3 276 293 31.508963 186.016676 108.7628195 2.036480457 -0.106689 121 24 SH16339 16339 YDR500C_4_1450856_1450201_INTRON_8_396 intron 83.502712 375.786465 83.502712 293.283753 188.3932325 2.275065298 -0.265418 121 25 SH5621 5621 snR34 snR34 26 42 31.524567 166.531906 99.0282365 1.995759045 0.020541 121 26 SH13623 13623 MT ATP6 ATP6 31.588416 187.759705 31.588416 157.171289 94.3798525 1.974879294 0.081774 121 27 SH2558 2558 Pro2 tRNA-exon/intron 26 38 31.665609 140.478672 86.0721405 1.934862603 0.177797 121 28 SH21629 21629 copy of SH7929 29.735352 185.688552 107.711952 2.032263896 -0.199315 121 29 SH16362 16362 YEL012W_5_131772_132551_INTRON_6_128 intron 27.78247 184.59032 27.78247 157.80785 92.79516 1.967525325 -0.187938 121 30 SH13478 13478 MT COX1 intronic 27.810366 184.118737 27.810366 157.308371 92.5593685 1.966420383 -0.183287 121 31 SH1745 1745 Leu7 tRNA 21 33 175.171364 391.786553 283.4789585 2.452520828 -0.040536 121 32 SH14875 14875 MT tRNA Ala 5' 29.803139 189.575951 29.803139 160.772812 95.2879755 1.9790381 -0.057314 121 33 SH12886 12886 MT COX1 COX1ai1 29.762923 183.389242 29.762923 154.626319 92.194621 1.964705583 -0.028538 121 34 SH21532 21532 copy of SH3752 29.707702 174.609518 102.15861 2.009274975 -0.138551 121 35 SH15446 15446 YBL087C_2_60732_59815_INTRON_43_546 intron 29.644478 171.91696 29.644478 143.272482 86.45848 1.936807596 0.024239 121 36 SH1091 1091 Gly4 5' flank 98.735158 305.882278 202.308718 2.306014598 -0.184223 121 37 SH14421 14421 MT 21S rRNA 21S rRNA3 35.500843 218.065834 35.500843 183.564991 109.532917 2.039544654 0.058594 121 38 SH10902 10902 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1396 1414 16133.293 12943.71928 14538.50614 4.162519784 0.084789 121 39 SH11775 11775 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5761 5777 156.354491 378.454326 267.4044085 2.427168563 -0.103106 121 40 SH10560 10560 RUF8 RUF8 726 744 33.425224 146.21724 89.821232 1.953379008 0.257594 121 41 SH15331 15331 YAL003W_1_142172_143158_INTRON_81_446 3' exon 33.431454 185.801956 33.431454 153.370502 93.400978 1.970351424 0.213978 121 42 SH17508 17508 YJL136C_10_156971_156248_INTRON_25_484 intron 70.390889 317.652474 70.390889 248.261585 159.326237 2.202287299 -0.093462 121 43 SH6729 6729 snR49 3' 29.48486 142.407157 85.9460085 1.934225712 0.01759 121 44 SH12656 12656 MT_15S MT_15S 27.507502 167.511604 27.507502 141.004102 84.255802 1.925599817 -0.120895 121 45 SH14917 14917 MT tRNA Tyr tRNA 33.473077 171.938489 33.473077 139.465412 86.4692445 1.936861664 0.298861 121 46 SH3826 3826 RNaseP RNaseP 96 110 63.420874 231.777805 147.5993395 2.169084414 -0.041791 121 47 SH1567 1567 Leu4 tRNA 6 18 51591.31173 32332.66361 41961.98767 4.622856052 0.137889 121 48 SH3616 3616 Val1 3' flank 31.442176 132.401685 81.9219305 1.913400178 0.209727 121 49 SH2969 2969 Ser1 76-83 + 3' flank 76 31.415936 149.577133 90.4965345 1.956631949 0.11053 121 50 SH14037 14037 MT COB Cytbi4 31.385816 197.077055 31.385816 166.691239 99.0385275 1.995804175 0.011323 121 51 SH18943 18943 YOL127W_15_80347_81189_INTRON_14_427 exon/intron 33.334993 224.774709 33.334993 192.439716 112.8873545 2.052645296 -0.096486 121 52 SH733 733 Gln4 5' flank 33.303162 205.650313 119.4767375 2.077283355 -0.228124 121 53 SH1834 1834 Leu9 5' flank 31.301308 172.22144 101.761374 2.007582962 -0.026877 121 54 SH365 365 Asn1 5' flank 31.291209 174.228603 102.759906 2.011823698 -0.039253 121 55 SH20116 20116 YDL075W spliced 31.298575 164.491009 97.894792 1.990759588 0.01962 121 56 SH3075 3075 Ser3 tRNA 71 83 33.304002 159.50383 96.403916 1.984094676 0.166999 121 57 SH213 213 Arg3 5' flank 30.377286 137.690786 84.034036 1.924455222 0.106636 121 58 SH7475 7475 snR71 5' - 11 -9 11 27.452262 107.742274 67.597268 1.829929144 0.097419 121 59 SH16768 16768 YGL103W_7_310965_311925_INTRON_50_560 exon/intron 31.46321 206.015205 31.46321 175.551995 103.5076025 2.014972249 -0.036694 121 60 SH10074 10074 RUF6 RUF6 216 230 29.501116 155.99382 92.747468 1.967302062 -0.054007 121 61 SH7952 7952 snoRNA cluster1 3' 29.49465 198.629949 29.49465 170.135299 99.8149745 1.9991957 -0.125632 121 62 SH4083 4083 SRP RNA SRP RNA 306 318 35.405556 148.414051 91.9098035 1.963361838 0.354604 121 63 SH14566 14566 MT 21S rRNA 21S rRNA3 36.289594 219.282332 36.289594 183.992738 110.141166 2.04194967 0.074993 121 64 SH7694 7694 snoRNA cluster1 intergenic 41.066588 203.388383 41.066588 163.321795 102.1941915 2.009426212 0.422033 121 65 SH2423 2423 Phe4 3' flank 32.988613 168.000483 100.494548 2.002142501 0.096482 121 66 SH18018 18018 YLR306W_12_744151_744851_INTRON_4_137 5' exon 30.836359 239.543755 30.836359 209.707396 120.2718775 2.080164091 -0.334825 121 67 SH21387 21387 Phe1_5 spliced 38.391866 180.816881 109.6043735 2.039827884 0.152756 121 68 SH20199 20199 YDR025W spliced 36.242179 176.828595 106.535387 2.027493888 0.146442 121 69 SH11404 11404 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3906 3919 11556.74762 8744.343103 10150.54536 4.006489376 0.277028 121 70 SH12413 12413 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.87931 201.947985 37.87931 165.068675 101.4739925 2.006354748 0.315498 121 71 SH19284 19284 YPL143W_16_282121_282969_INTRON_20_544 intron/exon 28.291892 142.821593 28.291892 115.529701 71.9107965 1.856794099 0.100907 121 72 SH9771 9771 RUF4 RUF4 631 648 37.861879 193.972619 115.917249 2.064148066 -0.010038 121 73 SH373 373 Asn1 5' flank 26.4623 148.072474 87.267387 1.940851972 -0.240598 121 74 SH15527 15527 YBR048W_2_332790_333771_INTRON_46_556 intron 28.462204 172.173506 28.462204 144.711302 86.586753 1.937451454 -0.069263 121 75 SH14659 14659 MT 21S rRNA 21S rRNA4 36.269127 235.776553 36.269127 200.507426 118.3882765 2.073308698 -0.112607 121 76 SH1881 1881 Leu9 3' flank 1301.452895 1585.92411 1443.688503 3.159473498 0.127918 121 77 SH17062 17062 YGR214W_7_920570_921783_INTRON_91_545 intron 34.565525 221.445838 34.565525 187.880313 111.222919 2.046194289 -0.012601 121 78 SH13531 13531 MT COX1 intronic 30.764535 174.168363 30.764535 144.403828 87.5841815 1.942425676 0.095561 121 79 SH4127 4127 SRP RNA SRP RNA 526 540 40.574753 160.740891 100.657822 2.002847529 0.442677 121 80 SH10700 10700 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 386 403 30.878881 171.425378 101.1521295 2.00497503 -0.04757 121 81 SH6105 6105 snR37 3' 28.974251 135.303001 82.138626 1.914547434 0.020677 121 82 SH15980 15980 YDL136W_4_217600_218367_INTRON_4_408 intron 29.018556 190.884245 29.018556 162.865689 95.9421225 1.982009322 -0.123156 121 83 SH2466 2466 Phe5 3' flank 29.062021 130.709086 79.8855535 1.902468249 0.053967 121 84 SH4152 4152 SRP RNA SRP RNA 651 667 50.736344 199.929882 125.333113 2.098065827 0.106 121 85 SH19046 19046 YOR234C_15_779404_778554_INTRON_20_546 intron 1744.230142 4059.018747 1744.230142 2315.788605 2030.009374 3.307498043 -0.082787 121 86 SH20074 20074 YCR028C-A spliced 29.127115 143.50383 86.3154725 1.936088652 -0.014099 121 87 SH13265 13265 MT COX1 COX1-ai4 27.140202 176.449588 27.140202 150.309386 88.724794 1.948045 -0.199009 121 88 SH7656 7656 snoRNA cluster1 5' 29.040507 177.864068 29.040507 149.823561 89.432034 1.951493108 -0.053971 121 89 SH391 391 Asn1 36-52 36 52 36.762048 177.573746 107.167897 2.030064708 0.156408 121 90 SH629 629 Gln2 5' flank 28.838571 142.257628 85.5480995 1.932210366 -0.028269 121 91 SH3444 3444 Trp1 tRNA 51 68 44.225749 181.072594 112.6491715 2.051728002 0.243827 121 92 SH16050 16050 YDL191W_4_117665_118518_INTRON_4_494 intron 30.520035 171.265717 30.520035 141.745682 86.1328585 1.93516886 0.093892 121 93 SH5708 5708 snR34 snR34 461 481 30.406605 161.506542 95.9565735 1.982074731 -0.0194 121 94 SH10455 10455 RUF8 RUF8 201 217 34.154054 156.747734 95.450894 1.97978 0.231823 121 95 SH14766 14766 MT ORF11; tRNA Leu; tRNA Gln ORF11 28.363116 175.660794 28.363116 148.297678 88.330397 1.946110182 -0.095686 121 96 SH4189 4189 telomerase RNA 5' 30.268764 155.018106 92.643435 1.966814649 0.004387 121 97 SH177 177 Arg2 1-13 1 13 34.135239 151.015176 92.5752075 1.966494694 0.268647 121 98 SH15756 15756 YCR031C_3_178212_177492_INTRON_8_314 intron 28.455207 171.673901 28.455207 144.218694 86.3369505 1.936196705 -0.067124 121 99 SH10343 10343 RUF7 RUF7 326 345 32.398194 151.931911 92.1650525 1.964566275 0.16177 121 100 SH2187 2187 Met2 66-72 + 3' flank 66 30.58422 147.467643 89.0259315 1.949516526 0.066354 121 101 SH16849 16849 YGL183C_7_157071_156547_INTRON_4_86 5' exon 28.759707 181.489432 28.759707 153.729725 91.244716 1.960207724 -0.094985 121 102 SH2741 2741 Pro5 tRNA 86 100 34.729996 174.785611 104.7578035 2.020186384 0.114996 121 103 SH9237 9237 snR6 / U6 RNA U6 56 70 32.887998 171.924532 102.406265 2.010326527 0.067313 121 104 SH8198 8198 snoRNA cluster 3; intergenic 31.010211 182.271053 31.010211 152.260842 91.6355265 1.962063879 0.069148 122 2 SH16333 16333 YDR471W_4_1401759_1402553_INTRON_32_415 intron/exon 31.503622 194.215242 31.503622 163.71162 97.607621 1.989483728 0.036652 122 3 SH17430 17430 YIL133C_9_99416_98527_INTRON_32_321 intron 42.081092 210.807131 42.081092 169.726039 105.9035655 2.024910582 0.355529 122 4 SH2448 2448 Phe5 tRNA 11 25 330.356312 517.274477 423.8153945 2.627176728 0.219675 122 5 SH19047 19047 YOR234C_15_779404_778554_INTRON_20_546 intron 31.268208 198.65912 31.268208 168.390912 99.82956 1.999259157 -0.006002 122 6 SH8409 8409 snoRNA cluster 5 snR190 29.115847 165.853549 29.115847 137.737702 83.4267745 1.921305453 0.017046 122 7 SH17167 17167 YHR016C_8_138446_136872_INTRON_48_215 intron 31.194702 173.561761 31.194702 143.367059 87.2808805 1.940919119 0.130215 122 8 SH11525 11525 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4511 4531 74.509324 206.757562 140.633443 2.148088609 0.32666 122 9 SH3482 3482 Tyr1 5' flank 31.193076 191.834817 111.5139465 2.047329186 -0.170731 122 10 SH3162 3162 Ser5 5' flank 33.308928 162.976422 98.142675 1.991857891 0.145393 122 11 SH12709 12709 MT ORF 8 (hypothetical) ORF8 31.214682 193.307574 31.214682 163.092892 97.153787 1.987459734 0.023275 122 12 SH9357 9357 RUF1 RUF1 361 382 29.105546 163.610152 96.357849 1.983887097 -0.120639 122 13 SH3869 3869 RNaseP RNaseP 311 325 39.577672 208.580873 124.0792725 2.093699238 -0.146014 122 14 SH12564 12564 MT_15S MT_15S 34.234591 218.551772 34.234591 185.317181 109.775886 2.040506951 -0.000946 122 15 SH5114 5114 snR11 snR11 171 193 28.881832 155.939815 92.4108235 1.96572284 -0.097754 122 16 SH10097 10097 RUF6 RUF6 331 347 30.794068 152.995493 91.8947805 1.963290845 0.050733 122 17 SH15619 15619 YBR181C_2_592732_591670_INTRON_7_358 intron 30.580606 223.928997 30.580606 194.348391 112.4644985 2.051015451 -0.216453 122 18 SH12255 12255 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.385786 195.487296 32.385786 164.10151 98.243648 1.99230448 0.085862 122 19 SH2548 2548 Pro2 5' flank 32.124927 145.451518 88.7882225 1.948355362 0.179502 122 20 SH10706 10706 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 416 433 33.896952 180.385057 107.1410045 2.029955714 0.0327 122 21 SH3236 3236 Thr1 tRNA 36 52 90.06953 288.463783 189.2666565 2.27707411 -0.161323 122 22 SH1590 1590 Leu4 3' flank 29.54759 160.035192 94.791391 1.976768896 -0.07146 122 23 SH19158 19158 YPL075W_16_412249_415357_INTRON_9_759 intron 32.453837 227.61748 32.453837 196.163643 114.30874 2.058079438 -0.16092 122 24 SH1628 1628 Leu5 tRNA 6 18 56756.86278 36411.32297 46584.09287 4.668237643 0.073399 122 25 SH10485 10485 RUF8 RUF8 351 370 57.419288 195.036124 126.227706 2.10115469 0.245539 122 26 SH990 990 Gly2 5' flank 33.554918 165.276525 99.4157215 1.997455069 0.144909 122 27 SH12530 12530 MT_ORF6 + ORF7 (hypothetical) ORF6/7 31.658131 182.683953 31.658131 152.025822 91.8419765 1.963041221 0.113314 122 28 SH6998 6998 snR60 snR60 71 88 31.758135 156.140605 93.94937 1.972893872 0.098224 122 29 SH7904 7904 snoRNA cluster1 intergenic 31.8476 184.081404 31.8476 153.233804 92.540702 1.96633279 0.119286 122 30 SH14511 14511 MT 21S rRNA 21S rRNA3 27.888727 182.316304 27.888727 155.427577 91.658152 1.962171097 -0.167804 122 31 SH4080 4080 SRP RNA SRP RNA 291 303 299.790305 512.698309 406.244307 2.608787288 0.117418 122 32 SH4639 4639 snR3 snR3 111 127 27.943365 152.649357 90.296361 1.955670248 -0.149626 122 33 SH15381 15381 YBL027W_2_168385_169338_INTRON_3_386 intron 38.037062 235.56047 38.037062 198.523408 118.280235 2.072912179 -0.057277 122 34 SH8486 8486 snR19 / U1 RNA 5' 31.943105 184.655964 108.2995345 2.03462659 -0.077907 122 35 SH11866 11866 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6216 6233 242.340892 506.239025 374.2899585 2.573208176 -0.115419 122 36 SH1967 1967 Lys2 tRNA 36 53 11933.81783 16767.40943 14350.61363 4.156870472 -0.71729 122 37 SH18035 18035 YLR316C_12_766358_765266_INTRON_230_285 3' exon 35.802801 216.268222 35.802801 181.465421 108.634111 2.035966215 0.088152 122 38 SH6809 6809 snR52 5' 39.764273 170.738404 105.2513385 2.022227628 0.302513 122 39 SH11513 11513 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4451 4464 1160.637611 1249.224057 1204.930834 3.080962118 0.357924 122 40 SH16718 16718 YGL031C_7_438393_437938_INTRON_1_456 intron/exon 43.702199 254.548155 43.702199 211.845956 127.7740775 2.106442754 -0.119842 122 41 SH5431 5431 snR31 221-225+3' 221 31.664003 149.922971 90.793487 1.958054696 0.124982 122 42 SH16498 16498 YER117W_5_396765_397649_INTRON_43_513 intron 31.658741 203.108115 31.658741 172.449374 102.0540575 2.008830276 -0.006995 122 43 SH21889 21889 copy of SH18799 29.654502 155.211492 92.432997 1.965827035 -0.039172 122 44 SH15516 15516 YBR048W_2_332790_333771_INTRON_46_556 intron 28.644947 185.979888 28.644947 158.334941 93.489944 1.9707649 -0.127194 122 45 SH5423 5423 snR31 snR31 181 198 29.622524 170.713201 100.1678625 2.000728406 -0.12099 122 46 SH19869 19869 Negative Control 31.584813 168.09916 99.8419865 1.999313213 0.014593 122 47 SH11304 11304 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3406 3423 185.409487 440.009445 312.709466 2.495141028 -0.18207 122 48 SH8785 8785 LSR1 / U2 RNA U2 566 585 29.495427 154.980246 92.2378365 1.964909108 -0.049126 122 49 SH11904 11904 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6406 6424 338.001327 539.875796 438.9385615 2.642403736 0.175684 122 50 SH3848 3848 RNaseP RNaseP 206 222 31.35462 192.545952 111.950286 2.049025207 -0.170786 122 51 SH2120 2120 Met1 5' flank - tRNA3 3 31.289502 202.871828 117.080665 2.06848518 -0.261429 122 52 SH9703 9703 RUF4 RUF4 291 308 31.231239 186.003741 108.61749 2.035899763 -0.117178 122 53 SH10771 10771 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 741 758 202.864781 441.62877 322.2467755 2.50818858 -0.086663 122 54 SH19589 19589 AEP2/ATP13 2.1 31.162872 169.916579 100.5397255 2.002337695 -0.021474 122 55 SH8516 8516 snR19 / U1 RNA U1 76 98 29.197411 119.269124 74.2332675 1.870598577 0.139251 122 56 SH3899 3899 RNase MRP 5' 31.19474 176.998473 104.0966065 2.017436572 -0.06105 122 57 SH5787 5787 snR35 snR35 121 140 31.248276 151.189211 91.2187435 1.960084086 0.090741 122 58 SH12301 12301 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.254853 207.458043 37.254853 171.20319 104.2290215 2.017988661 0.234011 122 59 SH4220 4220 telomerase RNA telomerase 136 152 29.401954 153.977242 91.689598 1.962320069 -0.050454 122 60 SH2097 2097 Lys4 3' flank 29.449144 134.605232 82.027188 1.913957824 0.058946 122 61 SH21426 21426 Trp1 spliced 1808.653077 1956.566157 1882.609617 3.274760273 0.228914 122 62 SH4439 4439 telomerase RNA telomerase 1231 1250 27.458831 142.836181 85.147506 1.930171932 -0.134685 122 63 SH2457 2457 Phe5 tRNA 56 70 864.678683 1020.026886 942.3527845 2.974213518 0.304996 122 64 SH2659 2659 Pro4 5' flank 31.227974 155.011372 93.119673 1.969041442 0.069167 122 65 SH688 688 Gln3 5' flank 31.067538 200.686428 115.876983 2.063997179 -0.251681 122 66 SH18886 18886 YOL047C_15_242745_241612_INTRON_244_306 intron 30.883366 184.935918 30.883366 155.052552 92.967959 1.968333297 0.045924 122 67 SH19794 19794 Negative Control 34.573627 173.03722 103.8054235 2.016220045 0.126555 122 68 SH8841 8841 LSR1 / U2 RNA U2 846 861 7125.930872 6153.403781 6639.667327 3.82214632 0.210603 122 69 SH5343 5343 snR30 snR30 566 582 36.145458 184.549634 110.347546 2.042762679 0.065596 122 70 SH1214 1214 Ile1 tRNA 31 45 36.041937 192.740846 114.3913915 2.058393343 -0.031015 122 71 SH4485 4485 U3b (snR17b) 5' - 3 3 31.22381 167.873211 99.5485105 1.998034766 -0.00553 122 72 SH8772 8772 LSR1 / U2 RNA U2 501 518 32.210442 143.764242 87.987342 1.944420198 0.194472 122 73 SH627 627 Gln2 5' flank 28.456363 162.478568 95.4674655 1.979855393 -0.161829 122 74 SH15137 15137 MT tRNA Phe 3' 28.560922 217.598687 28.560922 190.037765 109.2993435 2.038617553 -0.298168 122 75 SH10599 10599 RUF8 RUF8 921 935 42.234396 207.241399 124.7378975 2.09599842 -0.09211 122 76 SH1990 1990 Lys2 3' flank 786.678944 869.201521 827.9402325 2.917998987 0.443627 122 77 SH18009 18009 YLR287C-A_12_713158_712537_INTRON_4_433 intron 33.798268 218.183914 33.798268 185.385646 109.591957 2.039778682 -0.016935 122 78 SH15047 15047 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.983806 174.310627 30.983806 144.326821 87.6553135 1.942778247 0.110732 122 79 SH13018 13018 MT COX1 COX1ai2 33.043506 211.568143 33.043506 179.524637 106.2840715 2.026468183 0.010221 122 80 SH20796 20796 YKL157W spliced 33.132789 207.086479 120.109634 2.079577844 -0.246909 122 81 SH15771 15771 YCR097W_3_293828_294314_INTRON_106_159 intron/exon 37.163084 208.918121 37.163084 172.755037 104.9590605 2.021019935 0.215829 122 82 SH6632 6632 snR48 5' - 2 -14 2 32.2952 144.516663 88.4059315 1.946481405 0.195697 122 83 SH11942 11942 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6596 6614 51.232597 187.303205 119.267901 2.076523576 0.258218 122 84 SH19087 19087 YOR293W_15_867094_867848_INTRON_53_489 3' exon 210.212405 600.984065 210.212405 391.77166 300.9920325 2.478555 0.163653 122 85 SH16651 16651 YFR031C-A_6_221405_220494_INTRON_5_151 intron 31.438611 225.736963 31.438611 195.298352 113.3684815 2.05449233 -0.191533 122 86 SH17490 17490 YJL024C_10_396288_395627_INTRON_23_99 3' exon 31.436551 220.294148 31.436551 189.857597 110.647074 2.043939934 -0.143934 122 87 SH13372 13372 MT COX1 intronic 27.436215 189.853412 27.436215 163.417197 95.426706 1.979669933 -0.24226 122 88 SH19423 19423 YPR132W_16_794960_795762_INTRON_66_430 intron 537.837283 1084.387884 537.837283 547.550601 542.693942 2.734554974 0.72136 122 89 SH8713 8713 LSR1 / U2 RNA U2 206 222 29.250652 143.216026 86.233339 1.935675203 -0.00362 122 90 SH4016 4016 SRP RNA 5' 29.129018 148.361227 88.7451225 1.948144493 -0.039903 122 91 SH21064 21064 YMR201C spliced 50.549054 220.593946 135.5715 2.132168401 -0.112719 122 92 SH15543 15543 YBR078W_2_393082_394818_INTRON_59_388 intron 34.703166 220.288867 34.703166 186.585701 110.6444335 2.04392957 0.003828 122 93 SH10500 10500 RUF8 RUF8 426 445 34.562721 187.243135 110.902928 2.044943012 -0.006966 122 94 SH11756 11756 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5666 5681 1134.72586 526.168545 830.4472025 2.919312026 1.720676 122 95 SH5726 5726 snR34 3' 30.527144 166.444245 98.4856945 1.993373152 -0.039027 122 96 SH9807 9807 RUF4 3' 34.364354 188.992872 111.678613 2.047970012 -0.029556 122 97 SH4622 4622 snR3 snR3 26 42 424.008158 640.809352 532.408755 2.726245188 0.167911 122 98 SH10655 10655 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 161 178 118.636877 306.402945 212.519911 2.327399625 -0.003673 122 99 SH21419 21419 Ser4 spliced 81.415624 237.074922 159.245273 2.20206655 0.12765 122 100 SH3947 3947 RNase MRP RNaseMRP 151 167 42.474576 218.43793 130.456253 2.1154649 -0.206891 122 101 SH5346 5346 snR30 snR30 581 598 34.791588 188.947847 111.8697175 2.048712541 -0.014353 122 102 SH7338 7338 snR68 5' 32.948422 190.416485 111.6824535 2.047984946 -0.092624 122 103 SH14493 14493 MT 21S rRNA 21S rRNA3 31.078048 201.102295 31.078048 171.024247 101.0511475 2.00454125 -0.033171 122 104 SH9496 9496 RUF2 3' 33.143994 156.176095 94.6600445 1.976166704 0.179417 123 2 SH21645 21645 copy of SH8560 29.341988 149.757399 89.5496935 1.952064104 -0.03218 123 3 SH8590 8590 snR19 / U1 RNA U1 446 464 29.260517 140.029999 84.645258 1.927602633 0.014622 123 4 SH8041 8041 snoRNA cluster 2 intergenic 31.305021 189.755995 31.305021 159.450974 95.3779975 1.9794482 0.051406 123 5 SH6794 6794 snR50 3' 29.133961 143.567636 86.3507985 1.936266358 -0.01395 123 6 SH2801 2801 Pro6 96-102 + 3' flank 96 33.310216 137.989748 85.649982 1.932727276 0.297357 123 7 SH6205 6205 snR40 86-97 + 3' 86 31.190596 143.672935 87.4317655 1.941669248 0.128215 123 8 SH14698 14698 MT tRNA thr2 5' 29.098992 172.019848 29.098992 143.920856 86.509924 1.93706593 -0.018394 123 9 SH14644 14644 MT 21S rRNA intronic 29.126315 189.79834 29.126315 161.672025 95.39917 1.979544596 -0.109505 123 10 SH2149 2149 Met1 3' flank 29.160652 190.31917 109.739911 2.040364604 -0.260824 123 11 SH10742 10742 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 596 614 35.515615 170.82762 103.1716175 2.013560239 0.180444 123 12 SH8114 8114 snoRNA cluster 3; 5' 29.196168 145.549998 29.196168 117.35383 73.274999 1.864955821 0.15258 123 13 SH18388 18388 YMR116C_13_500687_499455_INTRON_538_810 intron 29.16783 171.535208 29.16783 143.367378 86.267604 1.935847736 -0.010415 123 14 SH11929 11929 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6531 6544 33.294414 174.410213 103.8523135 2.016416176 0.068054 123 15 SH6677 6677 snR49 5' 31.054648 165.889009 98.4718285 1.993312002 -0.003605 123 16 SH11155 11155 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2661 2676 31.90093 179.424314 105.662622 2.023921383 -0.033033 123 17 SH18774 18774 YNL265C_14_145280_144279_INTRON_28_132 5' exon 30.623523 197.974079 30.623523 168.350556 99.4870395 1.997766507 -0.044704 123 18 SH5029 5029 snR10 snR10 176 193 34.452826 161.944603 98.1987145 1.992105803 0.214967 123 19 SH9668 9668 RUF4 RUF4 116 133 28.068017 138.432174 83.2500955 1.92038474 -0.064065 123 20 SH6728 6728 snR49 3' 31.863232 179.261814 105.562523 2.023509762 -0.034323 123 21 SH17287 17287 YHR141C_8_382752_381991_INTRON_5_445 intron 31.650816 209.471029 31.650816 178.820213 105.2355145 2.022162329 -0.044321 123 22 SH15561 15561 YBR082C_2_407127_406586_INTRON_48_142 3' exon 31.500418 186.982226 31.500418 156.481808 93.991113 1.973086792 0.079546 123 23 SH3894 3894 RNaseP 3' 27.452916 177.00391 102.228413 2.009571619 -0.305696 123 24 SH16664 16664 YFR032C-A_6_223758_223245_INTRON_1_331 intron 119.800087 460.243643 119.800087 341.443556 230.6218215 2.362900398 -0.195685 123 25 SH18202 18202 YML024W_13_225889_226697_INTRON_4_401 intron 39.393243 216.41438 39.393243 178.021137 108.70719 2.03625827 0.20491 123 26 SH10481 10481 RUF8 RUF8 331 347 252.336233 438.892325 345.614279 2.538591677 0.176144 123 27 SH3982 3982 RNase MRP RNaseMRP 326 340 33.625492 165.502359 99.5639255 1.998102011 0.147449 123 28 SH21590 21590 copy of SH6251 41.779104 183.637038 112.708071 2.051955017 0.177534 123 29 SH7288 7288 snR66 5' 31.851969 178.464917 105.158443 2.021844147 -0.030457 123 30 SH19890 19890 Positive Control 6 77.58391 243.399591 160.4917505 2.205452714 0.032295 123 31 SH15193 15193 MT COX3 cox3 32.02463 213.988562 32.02463 182.963932 107.494281 2.031385359 -0.05932 123 32 SH12170 12170 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7736 7759 26.005583 119.244017 72.6248 1.861084949 -0.098284 123 33 SH8678 8678 LSR1 / U2 RNA U2 31 49 30.076912 153.45491 91.765911 1.96268138 -0.000598 123 34 SH4254 4254 telomerase RNA telomerase 306 323 28.05316 165.903777 96.9784685 1.986675321 -0.208345 123 35 SH152 152 Arg1 3' flank 34.115303 152.986132 93.5507175 1.971047123 0.25438 123 36 SH19857 19857 Negative Control 36.10585 180.684213 108.3950315 2.035009376 0.105529 123 37 SH11121 11121 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2491 2507 36.058537 166.645442 101.3519895 2.005832278 0.240444 123 38 SH19585 19585 AEP2/ATP13 2.1 166.92271 367.671044 267.296877 2.426993885 0.02006 123 39 SH15597 15597 YBR089C-A_2_426588_426148_INTRON_1_114 intron 33.950811 186.264114 33.950811 153.313303 93.632057 1.971424564 0.243175 123 40 SH19795 19795 Negative Control 33.92099 170.681583 102.3012865 2.009881095 0.126856 123 41 SH16367 16367 YEL012W_5_131772_132551_INTRON_6_128 3' exon 181.434837 597.041133 181.434837 416.606296 299.0205665 2.47570106 -0.110089 123 42 SH9098 9098 snR14 / U4 RNA U4 106 120 33.878899 149.766839 91.822869 1.962950858 0.262989 123 43 SH21030 21030 YMR116C spliced 31.843371 168.029352 99.9363615 1.999723534 0.030256 123 44 SH8982 8982 snR17a / U3a U3a 196 212 29.802824 146.524943 88.1638835 1.945290712 0.017838 123 45 SH6131 6131 snR39B 5' - 17 -4 17 41.811688 153.748112 97.7799 1.990249589 0.553706 123 46 SH17502 17502 YJL136C_10_156971_156248_INTRON_25_484 5' exon 34.707483 214.849301 34.707483 181.141818 107.9246505 2.033120651 0.053943 123 47 SH7873 7873 snoRNA cluster1 snR73 29.627231 167.710095 29.627231 139.082864 84.3550475 1.926111074 0.046142 123 48 SH9021 9021 snR17a / U3a U3a 391 409 29.541575 164.323377 96.932476 1.986469306 -0.093303 123 49 SH1399 1399 Leu1 tRNA-intron/exon 66 82 273.253934 448.248637 360.7512855 2.557207887 0.233713 123 50 SH13249 13249 MT COX1 COX1-ai4 31.329592 192.98894 31.329592 162.659348 96.99447 1.986746974 0.032848 123 51 SH17231 17231 YHR077C_8_255757_252375_INTRON_7_119 intron 29.258492 167.86345 29.258492 139.604958 84.431725 1.926505662 0.016846 123 52 SH5247 5247 snR30 snR30 86 103 29.176591 146.208963 87.692777 1.942963823 -0.025078 123 53 SH11354 11354 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3656 3669 85.383397 241.359871 163.371634 2.213176653 0.135254 123 54 SH7722 7722 snoRNA cluster1 snR77/intergenic 35.941159 225.528835 35.941159 190.587676 113.2644175 2.054093496 -0.008529 123 55 SH3562 3562 Tyr2 81-89 + 3' flank 81 31.031869 146.23856 88.6352145 1.9476063 0.103289 123 56 SH20294 20294 YDR500C spliced 31.062728 179.887418 105.475073 2.023149835 -0.085427 123 57 SH9315 9315 RUF1 RUF1 151 167 50.837357 172.994791 111.916074 2.048892467 0.432091 123 58 SH15244 15244 MT tRNA fMet 5' / tRNA 29.237645 200.044776 29.237645 171.807131 100.522388 2.002262797 -0.151927 123 59 SH16077 16077 YDR025W_4_491510_492319_INTRON_46_384 intron 29.319868 177.277426 29.319868 148.957558 89.138713 1.950066359 -0.029407 123 60 SH10901 10901 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1391 1410 15585.65006 11404.73497 13495.19251 4.130179084 0.24144 123 61 SH12387 12387 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.368902 176.783519 37.368902 140.414617 88.8917595 1.948861503 0.511788 123 62 SH18743 18743 YNL162W_14_331319_332151_INTRON_5_516 intron 29.426628 209.139624 29.426628 180.712996 105.069812 2.021477955 -0.19123 123 63 SH628 628 Gln2 5' flank 31.355433 156.846107 94.10077 1.973593177 0.068089 123 64 SH20756 20756 YJR094W-A spliced 44.102262 209.70458 126.903421 2.10347333 -0.091193 123 65 SH20816 20816 YKL190W spliced 29.139429 185.295707 107.217568 2.030265952 -0.235008 123 66 SH18039 18039 YLR333C_12_796335_795573_INTRON_1_423 intron 38.74972 238.281519 38.74972 200.531799 119.6407595 2.077879161 -0.068769 123 67 SH17120 17120 YHR010W_8_126513_127484_INTRON_32_592 intron 32.686692 172.851332 32.686692 141.16464 86.925666 1.939148027 0.239714 123 68 SH17705 17705 YKL081W_11_282533_284097_INTRON_206_531 intron 30.575153 145.740819 30.575153 116.165666 73.3704095 1.865520943 0.255928 123 69 SH17082 17082 YHL001W_8_104270_105084_INTRON_130_527 5' exon 30.440651 168.143889 30.440651 138.703238 84.5719445 1.927226316 0.105316 123 70 SH7012 7012 snR60 3' 3388.283995 4200.634477 3794.459236 3.579149892 -0.146995 123 71 SH13617 13617 MT ATP6 5' 28.419101 169.103192 28.419101 141.684091 85.051596 1.929682468 -0.05598 123 72 SH10047 10047 RUF6 RUF6 81 100 30.371326 156.536654 93.45399 1.970597848 0.00351 123 73 SH19032 19032 YOR234C_15_779404_778554_INTRON_20_546 5' exon 32.385716 202.925102 32.385716 171.539386 101.962551 2.008440693 0.040821 123 74 SH1293 1293 Ile2 3' flank 30.591626 148.376906 89.484266 1.95174668 0.061877 123 75 SH16705 16705 YGL031C_7_438393_437938_INTRON_1_456 intron 29.775238 178.762177 29.775238 149.986939 89.8810885 1.953668323 -0.003001 123 76 SH3846 3846 RNaseP RNaseP 196 213 37.746923 169.129842 103.4383825 2.014681721 0.27029 123 77 SH14011 14011 MT COB intronic 27.147197 143.872874 27.147197 117.725677 72.436437 1.85995708 0.000503 123 78 SH12883 12883 MT COX1 COX1ai1 29.245097 205.10242 29.245097 176.857323 103.05121 2.013053096 -0.180886 123 79 SH6 6 Ala1 5' flank 30.357529 152.954604 91.6560665 1.962161215 0.02132 123 80 SH3973 3973 RNase MRP RNaseMRP 281 293 33.449507 160.474261 96.961884 1.986601045 0.168986 123 81 SH16600 16600 YFL034C-A_6_64931_64242_INTRON_13_333 intron/exon 33.554853 215.453751 33.554853 182.898898 108.2268755 2.034335121 -0.002805 123 82 SH6726 6726 snR49 156-165 + 3' 156 29.646596 147.90691 88.776753 1.948299257 -0.000674 123 83 SH16040 16040 YDL191W_4_117665_118518_INTRON_4_494 intron 28.708654 192.979655 28.708654 165.271001 96.9898275 1.986726187 -0.157315 123 84 SH5475 5475 snR32 snR32 36 56 29.753026 144.451309 87.1021675 1.940028962 0.025551 123 85 SH9041 9041 snR17a / U3a 3' 29.772669 131.364096 80.5683825 1.906164645 0.100951 123 86 SH14524 14524 MT 21S rRNA 21S rRNA3 27.758198 173.547002 27.758198 146.788804 87.273501 1.940882398 -0.13312 123 87 SH12357 12357 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.722562 189.946082 31.722562 159.22352 95.473041 1.979880756 0.077841 123 88 SH13089 13089 MT COX1 COX1ai3 31.640189 194.796375 31.640189 164.156186 97.8981875 1.990774651 0.041983 123 89 SH3565 3565 Tyr2 3' flank 37.504508 183.805967 110.6552375 2.043971975 0.100503 123 90 SH21659 21659 copy of SH9189 29.405249 130.718382 80.0618155 1.903425434 0.078639 123 91 SH8700 8700 LSR1 / U2 RNA U2 141 158 31.235656 178.290821 104.7632385 2.020208915 -0.065991 123 92 SH15041 15041 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.122606 191.541514 29.122606 163.418908 96.270757 1.983494387 -0.118475 123 93 SH15165 15165 MT tRNA Val tRNA 32.904086 225.657269 32.904086 193.753183 113.3286345 2.054339656 -0.123551 123 94 SH21696 21696 copy of SH10661 88.670771 294.815178 191.7429745 2.28271946 -0.218332 123 95 SH6557 6557 snR46 3' 40.494304 201.874804 121.184554 2.083447269 -0.057593 123 96 SH8557 8557 snR19 / U1 RNA U1 281 298 30.728863 144.575507 87.652185 1.942762747 0.092191 123 97 SH11085 11085 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2311 2329 1297.834618 884.46687 1091.150744 3.037884753 1.053303 123 98 SH2035 2035 Lys3 3' flank 30.777017 150.742877 90.759947 1.957894234 0.0616 123 99 SH6934 6934 snR58 snR58 31 47 28.89804 164.473671 96.6858555 1.985362944 -0.139752 123 100 SH12608 12608 MT_15S MT_15S 40.741493 224.880387 40.741493 185.138894 112.9401935 2.052848527 0.143336 123 101 SH5833 5833 snR35 snR35 351 368 29.070056 144.344178 86.707117 1.938054746 -0.022779 123 102 SH5578 5578 snR33 176-183 + 3' 176 29.157396 170.789919 99.9736575 1.999885581 -0.151737 123 103 SH17623 17623 YJR094W-A_10_608000_608553_INTRON_3_277 intron 41.157339 243.530336 41.157339 203.372997 122.265168 2.087302749 -0.064744 123 104 SH5874 5874 snR35 3' 31.289652 141.662836 86.476244 1.936896818 0.14621 124 2 SH10354 10354 RUF7 RUF7 381 395 37.853143 207.561884 122.7075135 2.088871156 -0.16156 124 3 SH11015 11015 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1961 1974 37.716599 188.903353 113.309976 2.054268148 0.044916 124 4 SH18410 18410 YMR125W_13_517538_520445_INTRON_26_347 intron 29.142307 186.594206 29.142307 158.451899 93.797103 1.972189425 -0.092068 124 5 SH19625 19625 RNA14 2.2 62.951451 202.132675 132.542063 2.122353726 0.237515 124 6 SH9656 9656 RUF4 RUF4 56 68 237.019203 400.818316 318.9187595 2.503680066 0.260321 124 7 SH15830 15830 YDL075W_4_322225_322987_INTRON_58_478 exon/intron 33.258078 221.498908 33.258078 189.24083 111.249454 2.046297888 -0.070968 124 8 SH17263 17263 YHR101C_8_315970_314876_INTRON_111_197 3' exon 29.081082 198.186219 29.081082 170.105137 99.5931095 1.998229292 -0.153921 124 9 SH16193 16193 YDR381C-A_4_1238839_1238301_INTRON_27_220 exon/intron 33.335026 234.210052 33.335026 201.875026 117.605026 2.070425882 -0.187094 124 10 SH556 556 Cys1 3' flank 29.180088 135.298068 82.239078 1.915078233 0.035615 124 11 SH8541 8541 snR19 / U1 RNA U1 201 219 29.226726 141.091031 85.1588785 1.930229933 0.006306 124 12 SH4418 4418 telomerase RNA telomerase 1126 1142 33.473003 158.707725 96.090364 1.982679839 0.181545 124 13 SH19397 19397 YPR063C_16_678315_677807_INTRON_42_127 5' exon 32.392368 224.29652 32.392368 192.904152 112.64826 2.051724488 -0.134917 124 14 SH3396 3396 Thr4 66-72 + 3' flank 66 33.360076 186.656575 110.0083255 2.041425554 -0.044097 124 15 SH21123 21123 YNL112W spliced 31.1055 177.83427 104.469885 2.018991117 -0.071192 124 16 SH20998 20998 YML085C spliced 28.81483 143.764336 86.289583 1.93595837 -0.038214 124 17 SH17221 17221 YHR041C_8_189855_189122_INTRON_15_115 intron 30.637899 202.565106 30.637899 172.927207 101.782553 2.00767334 -0.071078 124 18 SH19040 19040 YOR234C_15_779404_778554_INTRON_20_546 intron 30.355803 219.763725 30.355803 190.407922 110.3818625 2.042897718 -0.190726 124 19 SH8755 8755 LSR1 / U2 RNA U2 416 433 30.075678 138.048395 84.0620365 1.924599907 0.0836 124 20 SH7035 7035 snR62 5' 94.553704 239.064753 166.8092285 2.222220074 0.248483 124 21 SH2865 2865 Pro7 3' flank 31.614733 168.694289 100.154511 2.000670515 0.012772 124 22 SH13512 13512 MT COX1 intronic 29.475168 168.006779 29.475168 139.531611 84.5033895 1.926874129 0.032794 124 23 SH52 52 Ala1 3' flank 31.376694 157.760465 94.5685795 1.975746866 0.064787 124 24 SH6263 6263 snR42 snR42 96 112 33.337598 183.032444 108.185021 2.034167134 -0.011818 124 25 SH15859 15859 YDL079C_4_314747_312950_INTRON_413_704 intron 29.409765 187.23452 29.409765 158.824755 94.11726 1.973669275 -0.075012 124 26 SH1123 1123 Gly4 3' flank 29.48055 140.850469 85.1655095 1.930263749 0.025848 124 27 SH16659 16659 YFR032C-A_6_223758_223245_INTRON_1_331 intron 29.576066 195.825574 29.576066 167.249508 98.412787 1.993051531 -0.10518 124 28 SH6177 6177 snR40 5' 31.683935 194.713667 113.198801 2.053841827 -0.177162 124 29 SH16452 16452 YER074W-A_0_5_307649_INTRON_95_196 exon/intron 43.871361 239.570637 43.871361 196.699276 120.2853185 2.080212622 0.04983 124 30 SH20509 20509 YGR027C spliced 31.9107 180.712195 106.3114475 2.026580031 -0.042693 124 31 SH16863 16863 YGL187C_7_150529_149708_INTRON_1_342 intron 35.041005 224.014368 35.041005 189.973363 112.507184 2.051180255 -0.019443 124 32 SH2572 2572 Pro2 96-103 + 3' flank 96 36.141724 171.002375 103.5720495 2.01524257 0.199653 124 33 SH7096 7096 snR63 5' - 7 -14 7 30.114287 151.412086 90.7631865 1.957909735 0.012835 124 34 SH17524 17524 YJL136C_10_156971_156248_INTRON_25_484 intron 30.147289 214.583979 30.147289 185.43669 107.7919895 2.032586488 -0.172216 124 35 SH7549 7549 snR79 3' 26.098984 132.721413 79.4101985 1.899876282 -0.180039 124 36 SH12313 12313 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.258503 237.085946 36.258503 201.827443 119.042973 2.075703764 -0.127106 124 37 SH2340 2340 Phe3 tRNA-exon/intron 26 42 36.240038 204.050233 120.1451355 2.079706192 -0.151321 124 38 SH929 929 Glu3 3' flank 34.181644 183.458992 108.820318 2.036709991 0.014206 124 39 SH19016 19016 YOR182C_15_678792_678190_INTRON_4_414 intron 32.126415 209.628107 32.126415 178.501692 105.3140535 2.022486329 -0.014628 124 40 SH17595 17595 YJL191W_10_73786_74610_INTRON_11_418 intron 32.104216 174.886739 32.104216 143.782523 87.9433695 1.944203101 0.187513 124 41 SH5174 5174 snR13 snR13 26 43 64.6373 245.481199 155.0592495 2.190497678 -0.143474 124 42 SH12866 12866 MT COX1 COX1ai1 32.057774 213.309533 32.057774 182.251759 107.1547665 2.030011494 -0.0515 124 43 SH10600 10600 RUF8 RUF8 926 940 38.097246 194.718341 116.4077935 2.065982057 -0.01401 124 44 SH13158 13158 MT COX1 intronic 20125.23001 31243.14594 20125.23001 11118.91593 15622.07297 4.193738662 0.612763 124 45 SH19853 19853 Negative Control 31.907579 175.866051 103.886815 2.016560432 -0.012292 124 46 SH9693 9693 RUF4 RUF4 241 262 29.809962 150.308411 90.0591865 1.95452802 -0.002317 124 47 SH1992 1992 Lys3 5' flank 32.712295 174.970194 103.8412445 2.016369884 0.039458 124 48 SH12069 12069 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7231 7249 32.584193 186.699564 109.6418785 2.039976468 -0.072676 124 49 SH9959 9959 RUF5-1 RUF5-1 601 618 33.43962 211.011885 122.2257525 2.08716272 -0.281284 124 50 SH11753 11753 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5651 5669 5877.818857 2524.407318 4201.113088 3.623364372 1.376497 124 51 SH6269 6269 snR42 snR42 126 146 29.216273 122.326095 75.771184 1.879504074 0.119605 124 52 SH1101 1101 Gly4 5' flank 31.070831 170.652891 100.861861 2.003726977 -0.031397 124 53 SH1954 1954 Lys2 5' flank 30.982025 126.587661 78.784843 1.896442674 0.213672 124 54 SH16529 16529 YER131W_5_423587_424307_INTRON_1_361 intron 28.975203 192.711865 28.975203 164.736662 96.8559325 1.986126227 -0.135512 124 55 SH8995 8995 snR17a / U3a U3a 261 273 44.61107 232.305803 138.4584365 2.141319423 -0.312331 124 56 SH13138 13138 MT COX1 cox1ai3/intronic 30.944956 189.036424 30.944956 159.091468 95.018212 1.977806854 0.029227 124 57 SH5301 5301 snR30 snR30 356 370 135.791418 313.160412 224.475915 2.35116975 0.093954 124 58 SH18313 18313 YML073C_13_124172_123227_INTRON_16_430 intron/exon 33.07322 215.224014 33.07322 183.150794 108.112007 2.03387393 -0.022447 124 59 SH21384 21384 Lys3_4 spliced 986.839346 1267.817773 1127.32856 3.052050509 0.125119 124 60 SH10838 10838 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1076 1091 447.406982 571.249874 509.328428 2.706997917 0.424144 124 61 SH17422 17422 YIL111W_9_155219_155762_INTRON_2_89 intron 33.352208 196.327857 33.352208 163.975649 98.6639285 1.994158404 0.14161 124 62 SH21832 21832 copy of SH16332 27.427628 168.527973 97.9778005 1.991127686 -0.267857 124 63 SH21144 21144 YNL162W spliced 37.301123 163.880185 100.590654 2.002557632 0.309266 124 64 SH16680 16680 YGL030W_7_439087_439634_INTRON_4_233 intron 29.293241 168.305059 29.293241 140.011818 84.6525295 1.92763994 0.017078 124 65 SH16108 16108 YDR064W_4_579453_580447_INTRON_22_560 intron 31.13275 227.575895 31.13275 197.443145 114.2879475 2.058000433 -0.221675 124 66 SH3599 3599 Val1 5' flank - tRNA8 8 31.945055 157.102953 94.524004 1.97554211 0.104529 124 67 SH18732 18732 YNL147W_14_350937_351380_INTRON_19_138 3' exon 32.735597 218.636124 32.735597 186.900527 109.818062 2.040673775 -0.068938 124 68 SH13162 13162 MT COX1 intronic 120.701591 419.268759 120.701591 299.567168 210.1343795 2.322497112 0.056037 124 69 SH19051 19051 YOR234C_15_779404_778554_INTRON_20_546 intron 32.422203 219.135303 32.422203 187.7131 110.0676515 2.0416597 -0.087782 124 70 SH17951 17951 YLR185W_12_522665_523290_INTRON_8_366 5' exon 51.609062 276.629976 51.609062 226.020914 138.814988 2.14243636 -0.150783 124 71 SH6098 6098 snR37 3' 32.321438 150.008781 91.1651095 1.959828658 0.167167 124 72 SH11039 11039 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2081 2096 37314.12157 30786.19967 34050.16062 4.532119165 -0.205041 124 73 SH19495 19495 YPT1 69.32266 198.60944 133.96605 2.126994752 0.350451 124 74 SH13577 13577 MT COX1 Exon 6 32.643518 184.139024 32.643518 152.495506 92.569512 1.966467974 0.174426 124 75 SH3936 3936 RNase MRP RNaseMRP 96 112 40.649133 203.699175 122.174154 2.08697934 -0.075862 124 76 SH21377 21377 Leu8_9 spliced 39.920816 165.615614 102.768215 2.011858813 0.371638 124 77 SH4142 4142 SRP RNA SRP RNA 601 615 88.894049 261.746859 175.320454 2.243832587 0.014102 124 78 SH12734 12734 MT COX1 Exon1 31.454842 204.29913 31.454842 173.844288 102.649565 2.011357113 -0.027259 124 79 SH16758 16758 YGL087C_7_346902_346404_INTRON_12_96 5' exon 31.618969 199.072976 31.618969 168.454007 100.036488 2.000158436 0.014471 124 80 SH2976 2976 Ser1 3' flank 31.760796 189.625588 110.693192 2.044120911 -0.129578 124 81 SH17699 17699 YKL006W_11_431544_432358_INTRON_130_527 3' exon 43.979906 244.391726 43.979906 201.41182 122.695863 2.08882992 -0.002178 124 82 SH9936 9936 RUF5-1 RUF5-1 486 503 31.972151 174.333237 103.152694 2.013480575 0.000381 124 83 SH7333 7333 snR66 3' 32.04008 152.450801 92.2454405 1.964944909 0.135941 124 84 SH13440 13440 MT COX1 intronic 30.05488 156.120445 30.05488 127.065565 78.5602225 1.895202705 0.146748 124 85 SH4921 4921 snR9 snR9 11 32 42.241275 182.703852 112.4725635 2.051046594 0.195779 124 86 SH16839 16839 YGL178W_7_167356_170575_INTRON_4_643 intron 30.042548 169.486849 30.042548 140.444301 85.2434245 1.930660888 0.067869 124 87 SH17720 17720 YKL081W_11_282533_284097_INTRON_206_531 3' exon 29.987868 205.485009 29.987868 176.497141 103.2425045 2.013858531 -0.131928 124 88 SH16018 16018 YDL189W_4_122079_123590_INTRON_1_99 5' exon 31.916199 206.839291 31.916199 175.923092 103.9196455 2.016697657 -0.012117 124 89 SH19122 19122 YPL031C_16_493033_492014_INTRON_18_119 3' exon 31.792968 217.925749 31.792968 187.132781 109.4628745 2.039266849 -0.106035 124 90 SH11193 11193 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2851 2868 35.646973 157.899493 96.773233 1.98575525 0.304363 124 91 SH13434 13434 MT COX1 intronic 29.499976 178.986213 29.499976 150.486237 89.9931065 1.954209244 -0.024968 124 92 SH16817 16817 YGL178W_7_167356_170575_INTRON_4_643 intron 31.328974 243.126775 31.328974 212.797801 122.0633875 2.086585418 -0.345766 124 93 SH18967 18967 YOR096W_15_505793_506766_INTRON_145_545 5' exon 33.152443 213.707353 33.152443 181.55491 107.3536765 2.030816922 -0.004813 124 94 SH4300 4300 telomerase RNA telomerase 536 557 31.059962 137.839282 84.449622 1.92659771 0.152603 124 95 SH4783 4783 snR5 snR5 86 105 30.971483 156.613188 93.7923355 1.97216735 0.043723 124 96 SH10795 10795 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 861 878 34.832462 147.936 91.384231 1.960871262 0.327375 124 97 SH19114 19114 YPL031C_16_493033_492014_INTRON_18_119 5' exon 36.781014 244.032824 36.781014 208.25181 122.516412 2.08819427 -0.186387 124 98 SH7483 7483 snR71 snR71 31 50 28.989121 158.685061 93.837091 1.972374536 -0.104197 124 99 SH7847 7847 snoRNA cluster1 snR74 35.90908 211.037131 35.90908 176.128051 106.0185655 2.025381924 0.14208 124 100 SH16623 16623 YFL039C_6_54695_53260_INTRON_11_318 intron 584.303519 1241.989289 584.303519 658.68577 621.4946445 2.793437391 0.521387 124 101 SH6462 6462 snR45 156-172 + 3' 156 29.197193 135.662381 82.429787 1.916084178 0.034753 124 102 SH209 209 Arg3 5' flank 33.240437 187.703762 110.4720995 2.043252608 -0.057841 124 103 SH5767 5767 snR35 snR35 21 33 30.340531 162.222451 96.281491 1.983542807 -0.027498 124 104 SH6374 6374 snR43 snR43 111 123 33.401251 170.926704 102.1639775 2.009297793 0.102176 125 2 SH16628 16628 YFL039C_6_54695_53260_INTRON_11_318 intron 30.307389 194.94272 30.307389 165.635331 97.97136 1.991099137 -0.047583 125 3 SH2734 2734 Pro5 tRNA-intron 51 67 93.914858 316.961902 205.43838 2.312681582 -0.301017 125 4 SH9932 9932 RUF5-1 RUF5-1 466 486 29.076514 130.39489 79.735702 1.901652822 0.056892 125 5 SH329 329 Arg5 5' flank 31.12175 178.713202 104.917476 2.020847834 -0.075225 125 6 SH19882 19882 Negative Control 31.089981 150.882805 90.986393 1.958976449 0.081845 125 7 SH6563 6563 snR47 5' 32.141318 176.879648 104.510483 2.019159855 -0.004487 125 8 SH10857 10857 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1171 1184 476.658993 647.20431 561.9316515 2.749683495 0.296383 125 9 SH1058 1058 Gly3 tRNA 26 40 31.191428 180.453079 105.8222535 2.024577006 -0.080888 125 10 SH8737 8737 LSR1 / U2 RNA U2 326 345 29.159706 122.366099 75.7629025 1.879456604 0.115348 125 11 SH20935 20935 YLR406C spliced 33.443412 196.597709 115.0205605 2.06077548 -0.128669 125 12 SH17094 17094 YHL001W_8_104270_105084_INTRON_130_527 intron 29.254695 176.806296 29.254695 148.551601 88.903148 1.948917139 -0.031835 125 13 SH15008 15008 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.294788 176.234661 30.294788 146.939873 88.6173305 1.947518663 0.049525 125 14 SH14274 14274 MT VAR1 includes 5’ processing site VAR1 29.161058 204.732226 29.161058 176.571168 102.866113 2.012272329 -0.18462 125 15 SH3489 3489 Tyr1 5' flank - tRNA3 3 35.304551 184.370181 109.837366 2.04075011 0.044566 125 16 SH7241 7241 snR65 5' 28.806577 145.580741 87.193659 1.940484903 -0.048602 125 17 SH12960 12960 MT COX1 COX1ai2 34.742747 206.002393 34.742747 172.259646 103.5011965 2.01494537 0.14 125 18 SH16057 16057 YDL219W_4_65243_65766_INTRON_66_136 5' exon 30.320797 190.226803 30.320797 160.906006 95.6134015 1.980518769 -0.022247 125 19 SH12041 12041 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7091 7108 130.291189 356.206177 243.248683 2.386050498 -0.186883 125 20 SH3509 3509 Tyr1 86-89 + 3' flank 86 27.772613 125.501031 76.636822 1.884437487 -0.005852 125 21 SH20205 20205 YDR059C spliced 83.701507 220.703123 152.202315 2.182421258 0.29525 125 22 SH7150 7150 snR63 3' 31.414673 140.417499 85.916086 1.934074484 0.161638 125 23 SH1225 1225 Ile1 3' flank 29.351401 151.77912 90.5652605 1.956961641 -0.042377 125 24 SH19643 19643 RNA14 2.2 32.2928 178.356161 105.3244805 2.022529326 -0.006289 125 25 SH2905 2905 Pro8 tRNA 46 62 67.097623 244.110139 155.603881 2.192020425 -0.100212 125 26 SH21325 21325 YPR028W spliced 29.409816 160.597136 95.003476 1.977739496 -0.083999 125 27 SH16142 16142 YDR092W_4_629869_630598_INTRON_31_298 intron 37.448435 158.089964 37.448435 121.641529 79.544982 1.900612788 0.642529 125 28 SH13797 13797 MT COB intronic 27.595834 214.002117 27.595834 187.406283 107.5010585 2.031412741 -0.348261 125 29 SH12622 12622 MT_15S MT_15S 120.893235 443.439478 120.893235 323.546243 222.219739 2.346782633 -0.086338 125 30 SH14583 14583 MT 21S rRNA intronic 31.801517 179.940644 31.801517 149.139127 90.470322 1.956506136 0.138222 125 31 SH6419 6419 snR45 5' 29.892295 154.61485 92.2535725 1.964983193 -0.019476 125 32 SH8680 8680 LSR1 / U2 RNA U2 41 58 30.992089 161.341049 96.166569 1.983024122 0.020869 125 33 SH890 890 Glu3 5' flank 30.059312 175.984026 103.021669 2.012928581 -0.124522 125 34 SH17064 17064 YGR214W_7_920570_921783_INTRON_91_545 intron 32.151571 212.902414 32.151571 181.750843 106.951207 2.02918569 -0.043356 125 35 SH13436 13436 MT COX1 intronic 28.135565 167.039211 28.135565 139.903646 84.0196055 1.924380638 -0.067243 125 36 SH11897 11897 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6371 6388 9030.888861 7434.469789 8232.679325 3.915541199 0.216209 125 37 SH15016 15016 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " cox2 / ORF1exon1 28.17949 177.274599 28.17949 150.095109 89.1372995 1.950059473 -0.118754 125 38 SH15990 15990 YDL136W_4_217600_218367_INTRON_4_408 intron 32.258471 198.27684 32.258471 167.018369 99.63842 1.998426832 0.060598 125 39 SH9500 9500 RUF2 3' 30.221694 149.294106 89.7579 1.953072683 0.031636 125 40 SH11458 11458 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4176 4192 180.48495 345.085499 262.7852245 2.419600943 0.219145 125 41 SH21874 21874 copy of SH18249 30.204197 153.286797 91.745497 1.962584758 0.009054 125 42 SH13940 13940 MT COB Cytbi3 29.165754 164.909974 29.165754 136.74422 82.954987 1.9188425 0.026295 125 43 SH18454 18454 YMR143W_13_551927_552902_INTRON_25_568 intron 30.145583 225.369538 30.145583 196.223955 113.184769 2.053787989 -0.249823 125 44 SH21672 21672 copy of SH9622 28.063308 124.725649 76.3944785 1.883061971 0.0207 125 45 SH14439 14439 MT 21S rRNA 21S rRNA3 32.033367 191.552095 32.033367 160.518728 96.2760475 1.983518253 0.087836 125 46 SH3076 3076 Ser3 tRNA 76 90 1714.797654 2404.423622 2059.610638 3.313785126 -0.164007 125 47 SH1786 1786 Leu8 5' flank 33.800872 165.052371 99.4266215 1.997502682 0.15994 125 48 SH1614 1614 Leu5 5' flank 31.642041 196.111981 113.877011 2.056436059 -0.190822 125 49 SH4078 4078 SRP RNA SRP RNA 281 296 39.444322 184.274902 111.859612 2.048673309 0.130632 125 50 SH11704 11704 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5406 5419 65.09057 217.514559 141.3025645 2.150150044 0.110872 125 51 SH9721 9721 RUF4 RUF4 381 400 31.162269 182.803501 106.982885 2.029314305 -0.095784 125 52 SH12346 12346 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 43.787746 198.710275 43.787746 155.922529 99.8551375 1.999370414 0.568399 125 53 SH20729 20729 YJL177W spliced 32.872047 172.625405 102.748726 2.011776446 0.062273 125 54 SH8701 8701 LSR1 / U2 RNA U2 146 163 28.903056 146.546613 87.7248345 1.943122558 -0.046713 125 55 SH3501 3501 Tyr1 tRNA-intron/exon 46 63 34.727017 188.414188 111.5706025 2.047549778 -0.011805 125 56 SH18069 18069 YLR344W_12_819312_820142_INTRON_20_466 intron 28.908969 151.359792 28.908969 123.450823 76.179896 1.881840375 0.090273 125 57 SH8370 8370 snoRNA cluster 5 5' 36.793872 174.373965 36.793872 138.580093 87.6869825 1.942935125 0.49616 125 58 SH16009 16009 YDL137W_4_216158_217074_INTRON_1_332 intron 32.990981 207.184378 32.990981 175.193397 104.092189 2.017418142 0.049526 125 59 SH2923 2923 Pro8 3' flank 29.180085 123.344623 76.262354 1.882310207 0.110184 125 60 SH1724 1724 Leu7 5' flank 33.229797 179.699491 106.464644 2.027205406 0.015313 125 61 SH18922 18922 YOL121C_15_92849_92025_INTRON_21_410 intron 31.336012 223.986009 31.336012 193.649997 112.4930045 2.051125516 -0.181146 125 62 SH18216 18216 YML025C_13_225365_224406_INTRON_28_126 intron 29.391813 205.057107 29.391813 176.665294 103.0285535 2.012957602 -0.170427 125 63 SH13771 13771 MT COB intronic 29.375143 202.730912 29.375143 174.355769 101.865456 2.008026934 -0.158118 125 64 SH13964 13964 MT COB Cytbi3 29.306289 199.152314 29.306289 170.846025 100.076157 2.00033062 -0.141844 125 65 SH8236 8236 snoRNA cluster 3; 3' 29.191893 151.49413 29.191893 123.302237 76.247065 1.882223131 0.111301 125 66 SH826 826 Glu1 3' flank 29.045918 121.949736 75.497827 1.877934452 0.110132 125 67 SH5975 5975 snR36 snR36 331 351 125.371731 324.746961 225.059346 2.352297053 -0.055859 125 68 SH7345 7345 snR68 5' 26.804912 106.552032 66.678472 1.823985639 0.057802 125 69 SH4560 4560 U3b (snR17b) U3b 356 375 30.553025 151.684976 91.1190005 1.959608947 0.041394 125 70 SH20275 20275 YDR447C spliced 80.818101 269.724198 175.2711495 2.243710435 -0.133315 125 71 SH16225 16225 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 34.326252 203.410394 34.326252 170.084142 102.205197 2.00947298 0.147 125 72 SH17449 17449 YIL148W_9_68708_69528_INTRON_9_442 intron 32.463813 176.239187 32.463813 144.775374 88.6195935 1.947529754 0.205055 125 73 SH10197 10197 RUF6 RUF6 831 848 28.72155 161.509905 95.1157275 1.978252334 -0.137735 125 74 SH13348 13348 MT COX1 COX1-ai5a 28.882081 198.824719 28.882081 170.942638 99.9123595 1.999619215 -0.172149 125 75 SH17051 17051 YGR214W_7_920570_921783_INTRON_91_545 intron 29.074777 176.26768 29.074777 148.192903 88.63384 1.947599565 -0.042943 125 76 SH14720 14720 MT tRNA cys; tRNA his tRNA Cys 31.256791 200.569006 31.256791 170.312215 100.784503 2.003393759 -0.018212 125 77 SH10099 10099 RUF6 RUF6 341 360 29.494468 135.545035 82.5197515 1.916557911 0.056763 125 78 SH6750 6750 snR50 5' 31.694535 152.930708 92.3126215 1.965261084 0.110891 125 79 SH20632 20632 YHR123W spliced 41.967586 202.997594 122.48259 2.088074361 -0.048821 125 80 SH6947 6947 snR58 96 + 3' 96 32.047396 154.313094 93.180245 1.969323848 0.126579 125 81 SH17683 17683 YKL006W_11_431544_432358_INTRON_130_527 intron 30.14549 201.144542 30.14549 171.999052 101.072271 2.004632024 -0.095899 125 82 SH17131 17131 YHR010W_8_126513_127484_INTRON_32_592 intron 26.164118 176.062137 26.164118 150.898019 88.5310685 1.947095706 -0.279195 125 83 SH6536 6536 snR46 snR46 171 190 30.292593 132.422203 81.357398 1.91039705 0.131161 125 84 SH7757 7757 snoRNA cluster1 snR76 242.802855 634.049857 242.802855 392.247002 317.5249285 2.501777827 0.325557 125 85 SH1744 1744 Leu7 tRNA 16 28 503.721756 777.443695 640.5827255 2.806575223 0.064798 125 86 SH4394 4394 telomerase RNA telomerase 1006 1027 30.275263 158.443394 94.3593285 1.974784842 -0.012872 125 87 SH2981 2981 Ser1 3' flank 28.172268 111.149259 69.6607635 1.84298823 0.1245 125 88 SH17612 17612 YJR021C_10_469271_468247_INTRON_317_396 5' exon 32.138361 210.208383 32.138361 179.070022 105.6041915 2.023681156 -0.018773 125 89 SH20422 20422 YGL031C spliced 40.103232 190.109487 115.1063595 2.061099319 0.073806 125 90 SH9765 9765 RUF4 RUF4 601 622 29.842593 170.928842 100.3857175 2.001671927 -0.108436 125 91 SH14936 14936 MT tRNA Asn tRNA / 3' 29.688386 216.366479 29.688386 187.678093 108.6832395 2.036162575 -0.213098 125 92 SH683 683 Gln3 5' flank 28.538546 151.96672 90.252633 1.955459881 -0.101746 125 93 SH223 223 Arg3 5' flank 31.369218 168.221303 99.7952605 1.999109916 0.001051 125 94 SH20839 20839 YLL050C spliced 30.251187 169.880014 100.0656005 2.000284806 -0.076761 125 95 SH16381 16381 YER007C-A_5_166884_166236_INTRON_12_114 intron 29.172429 191.432586 29.172429 163.260157 96.216293 1.98324862 -0.114141 125 96 SH4131 4131 SRP RNA SRP RNA 546 560 36.976012 149.935861 93.4559365 1.970606894 0.425371 125 97 SH1284 1284 Ile2 tRNA 116 128 33.024826 164.40116 98.712993 1.99437432 0.120537 125 98 SH14081 14081 MT COB Cytbi4 29.117207 193.767235 29.117207 165.650028 97.3836175 1.988485903 -0.129845 125 99 SH15719 15719 YBR255C-A_2_727032_726576_INTRON_64_157 5' exon 33.100717 227.563505 33.100717 195.462788 114.2817525 2.057976892 -0.131238 125 100 SH15635 15635 YBR186W_2_600511_602318_INTRON_1552_1664 exon/intron 35.153135 200.042286 35.153135 165.889151 100.521143 2.002257418 0.217656 125 101 SH21751 21751 copy of SH12972 29.300446 151.231732 90.266089 1.955524626 -0.043056 125 102 SH15159 15159 MT tRNA Val 5' 29.370876 168.755557 29.370876 140.384681 84.8777785 1.928794004 0.020579 125 103 SH18444 18444 YMR142C_13_551206_550205_INTRON_5_406 intron 29.431522 198.991731 29.431522 170.560209 99.9958655 1.999982044 -0.132172 125 104 SH11900 11900 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6386 6401 1689.171206 1345.543373 1517.35729 3.181087855 0.728031 126 2 SH6364 6364 snR43 snR43 61 77 33.420659 192.10404 112.7623495 2.052164116 -0.090466 126 3 SH14799 14799 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys / intergenic 29.075284 199.435178 29.075284 171.359894 100.217589 2.00094395 -0.160288 126 4 SH244 244 Arg3 3' flank 28.995004 163.676015 96.3355095 1.983786399 -0.128862 126 5 SH10348 10348 RUF7 RUF7 351 368 29.984228 163.263746 96.623987 1.985084954 -0.057197 126 6 SH5033 5033 snR10 snR10 196 210 39.379593 168.76317 104.0713815 2.01733132 0.320978 126 7 SH6004 6004 snR37 5' 60.402931 174.049998 117.2264645 2.069025667 0.530578 126 8 SH7317 7317 snR66 76-86 + 3' 76 31.048223 154.756805 92.902514 1.968027466 0.058519 126 9 SH8105 8105 snoRNA cluster 3; 5' 31.120258 212.927654 31.120258 182.807396 106.963827 2.029236933 -0.098328 126 10 SH18430 18430 YMR142C_13_551206_550205_INTRON_5_406 intron 31.20619 222.556038 31.20619 192.349848 111.778019 2.048356409 -0.174751 126 11 SH6611 6611 snR47 3' 29.176851 134.058278 81.6175645 1.911783631 0.042555 126 12 SH3276 3276 Thr2 5' flank 31.328586 192.45625 111.892418 2.048800659 -0.170995 126 13 SH21470 21470 copy of SH1240 31.316265 197.844933 114.580599 2.059111088 -0.218065 126 14 SH18473 18473 YMR143W_13_551927_552902_INTRON_25_568 intron 31.230625 181.980334 31.230625 151.749709 91.490167 1.96137442 0.086571 126 15 SH2499 2499 Pro1 5' flank - tRNA2 2 151.312452 327.979356 239.645904 2.37957001 0.121849 126 16 SH18871 18871 YNR053C_14_723108_721117_INTRON_811_1341 intron 32.912087 197.893064 32.912087 165.980977 99.446532 1.997589643 0.104427 126 17 SH13144 13144 MT COX1 intronic 30.552947 196.202475 30.552947 166.649528 98.6012375 1.993882366 -0.0387 126 18 SH5847 5847 snR35 snR35 421 440 29.234118 195.788407 112.5112625 2.051195998 -0.284906 126 19 SH19576 19576 AEP2/ATP13 0.6 29.964455 143.721894 86.8431745 1.93873569 0.04441 126 20 SH4158 4158 SRP RNA 3' 55.827989 196.077388 125.9526885 2.100207442 0.214513 126 21 SH17937 17937 YLR093C_12_327416_326514_INTRON_17_157 intron 31.503295 217.072763 31.503295 186.569468 109.0363815 2.03757143 -0.111912 126 22 SH10037 10037 RUF6 RUF6 31 48 28.387215 153.354343 90.870779 1.958424251 -0.120059 126 23 SH2018 2018 Lys3 tRNA-exon/intron 36 53 29.296785 172.234733 100.765759 2.00331298 -0.150676 126 24 SH20891 20891 YLR287C-A spliced 37.16331 208.698835 122.9310725 2.089661671 -0.185081 126 25 SH8230 8230 snoRNA cluster 3; 3' 34.212469 216.137373 34.212469 182.924904 108.5686865 2.035704584 0.020205 126 26 SH14740 14740 MT tRNA cys; tRNA his 3' 33.270141 194.259577 33.270141 161.989436 97.6297885 1.989582348 0.149386 126 27 SH11163 11163 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2701 2724 29.378146 157.633148 93.505647 1.97083784 -0.071144 126 28 SH10463 10463 RUF8 RUF8 241 258 29.452682 195.505463 112.4790725 2.051071727 -0.271489 126 29 SH9054 9054 snR17a / U3a 3' 29.537274 152.156209 90.8467415 1.958309355 -0.031286 126 30 SH17957 17957 YLR185W_12_522665_523290_INTRON_8_366 intron 29.628899 204.388394 29.628899 175.759495 102.694197 2.011545903 -0.150186 126 31 SH19026 19026 YOR182C_15_678792_678190_INTRON_4_414 intron 27.723057 203.176977 27.723057 176.45392 102.0884885 2.008976774 -0.282853 126 32 SH5900 5900 snR36 5' 29.821524 158.311386 94.066455 1.973434777 -0.043535 126 33 SH3581 3581 Val1 5' flank 29.915597 160.935876 95.4257365 1.979665521 -0.050319 126 34 SH4818 4818 snR5 3' 32.025224 173.763938 102.894581 2.012392503 0.006805 126 35 SH2962 2962 Ser1 tRNA 41 55 30.081295 141.763972 85.9226335 1.93410758 0.063295 126 36 SH18432 18432 YMR142C_13_551206_550205_INTRON_5_406 intron 34.212829 226.000913 34.212829 192.788084 113.5004565 2.054997608 -0.068401 126 37 SH8545 8545 snR19 / U1 RNA U1 221 236 34.274459 177.050119 105.662289 2.023920015 0.077457 126 38 SH1333 1333 Ile3 tRNA-intron 46 61 29.225759 152.224851 90.725305 1.957728437 -0.053655 126 39 SH9193 9193 snR7 U5 RNA 3' 32.315198 149.55914 90.937169 1.95874143 0.169198 126 40 SH19188 19188 YPL079W_16_406631_407534_INTRON_12_432 intron 32.334613 201.281637 32.334613 169.947024 101.1408185 2.004926464 0.047345 126 41 SH1243 1243 Ile2 5' flank 32.338951 176.359843 104.349397 2.018489944 0.009963 126 42 SH16292 16292 YDR450W_4_1359912_1360787_INTRON_48_482 intron 32.324736 188.623705 32.324736 157.298969 94.8118525 1.976862632 0.12535 126 43 SH12323 12323 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.28769 186.281692 32.28769 154.994002 93.640846 1.971465329 0.138204 126 44 SH17477 17477 YJL001W_10_434855_435618_INTRON_66_181 intron 34.259597 198.16778 34.259597 164.908183 99.58389 1.998189087 0.186028 126 45 SH3716 3716 Val3 61-73 + 3' flank 61 34.160966 165.743518 99.952242 1.99979254 0.175505 126 46 SH795 795 Glu1 5' flank - tRNA7 7 34.031838 181.068169 107.5500035 2.031610429 0.031079 126 47 SH3063 3063 Ser3 tRNA 11 25 2783.45771 3538.031695 3160.744703 3.499789419 -0.132018 126 48 SH5350 5350 snR30 601 + 3' 601 33.698599 175.84877 104.7736845 2.020252217 0.068648 126 49 SH8414 8414 snoRNA cluster 5 snR190 49.479537 236.43343 49.479537 187.953893 118.716715 2.074511871 0.22829 126 50 SH6099 6099 snR37 3' 31.337454 162.019668 96.678561 1.985330178 0.037321 126 51 SH21922 21922 copy of SH20202 692.984793 800.881577 746.933185 2.873281755 0.416613 126 52 SH17557 17557 YJL189W_10_75932_76473_INTRON_7_392 intron 31.013635 207.090802 31.013635 177.077167 104.045401 2.017222888 -0.072387 126 53 SH6845 6845 snR52 3' 36.752981 210.635651 123.694316 2.092349743 -0.212855 126 54 SH19676 19676 SIR1 2.4 32.762647 169.377933 101.07029 2.004623512 0.075336 126 55 SH12259 12259 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 65.948747 342.743614 65.948747 277.794867 171.871807 2.235204643 -0.375943 126 56 SH2301 2301 Phe2 3' flank 58.157262 190.801317 124.4792895 2.095097101 0.302567 126 57 SH15666 15666 YBR189W_2_604466_605466_INTRON_8_420 intron/exon 28.932369 189.341476 28.932369 161.409107 95.170738 1.978503437 -0.122052 126 58 SH11643 11643 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5101 5114 72.295204 173.617376 122.95629 2.089750751 0.665919 126 59 SH8773 8773 LSR1 / U2 RNA U2 506 524 35.042087 134.121971 84.582029 1.927278099 0.425575 126 60 SH3864 3864 RNaseP RNaseP 286 298 37.148952 193.710998 115.429975 2.062318602 -0.020547 126 61 SH14518 14518 MT 21S rRNA 21S rRNA3 47.176214 255.46681 47.176214 209.290596 128.233405 2.108001174 -0.043929 126 62 SH20351 20351 YER102W spliced 35.329702 171.24385 103.286776 2.014044722 0.17005 126 63 SH19425 19425 YPR132W_16_794960_795762_INTRON_66_430 intron 33.340463 193.61597 33.340463 161.275507 97.307985 1.98814848 0.157821 126 64 SH7960 7960 snoRNA cluster 2 5' 31.297289 174.277774 31.297289 143.980485 87.638887 1.942696853 0.13357 126 65 SH16233 16233 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 33.155706 254.312435 33.155706 222.156729 127.6562175 2.106041972 -0.39941 126 66 SH19637 19637 RNA14 2.2 33.000446 201.070225 117.0353355 2.068317004 -0.185531 126 67 SH18027 18027 YLR306W_12_744151_744851_INTRON_4_137 3' exon 48.474107 261.113736 48.474107 213.639629 131.056868 2.117459785 -0.071131 126 68 SH14736 14736 MT tRNA cys; tRNA his 3' 28.791664 157.115236 28.791664 129.323572 79.057618 1.897943725 0.043395 126 69 SH1081 1081 Gly3 3' flank 150.354929 332.669456 241.5121925 2.382939061 0.08914 126 70 SH18583 18583 YNL050C_14_534978_534075_INTRON_18_108 5' exon 34.418125 240.508422 34.418125 207.090297 120.754211 2.081902285 -0.220022 126 71 SH21228 21228 YOR234C spliced 38.289786 196.564982 117.427384 2.069769386 -0.031001 126 72 SH19835 19835 Negative Control 30.635669 192.691532 111.6636005 2.047911627 -0.19985 126 73 SH16721 16721 YGL033W_7_435621_436347_INTRON_56_125 5' exon 49.279512 260.442935 49.279512 212.163423 130.7214675 2.116346915 -0.044562 126 74 SH8310 8310 snoRNA cluster4 intergenic 30.964669 203.209813 30.964669 173.245144 102.1049065 2.009046612 -0.053112 126 75 SH11572 11572 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4746 4759 353.121739 246.805633 299.963686 2.477068682 1.561017 126 76 SH11469 11469 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4231 4246 4853.747684 3144.817346 3999.282515 3.601982084 0.779253 126 77 SH3367 3367 Thr4 5' flank 29.689406 136.530114 83.10976 1.919652028 0.064994 126 78 SH14351 14351 MT ORF9 and ORF10 (hypothetical) 5' 29.910081 167.298892 29.910081 138.388811 84.149446 1.925051261 0.070052 126 79 SH10711 10711 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 441 458 32.134435 158.550816 95.3426255 1.979287107 0.106258 126 80 SH3017 3017 Ser2 tRNA 46 58 32.308041 179.522965 105.915503 2.024959533 -0.016728 126 81 SH11315 11315 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3461 3474 962.395544 958.817523 960.6065335 2.982545536 0.541131 126 82 SH18614 18614 YNL069C_14_494998_493953_INTRON_29_477 intron 32.531075 218.637888 32.531075 187.106813 109.818944 2.040677263 -0.078307 126 83 SH3903 3903 RNase MRP 5' 34.638095 180.682252 107.6601735 2.032055075 0.055832 126 84 SH13184 13184 MT COX1 Exon4 34.648044 229.79648 34.648044 196.148436 115.39824 2.062199185 -0.097088 126 85 SH1897 1897 Lys1 5' flank 32.562032 200.120628 116.34133 2.065734024 -0.190633 126 86 SH21227 21227 YOR234C spliced 40.724842 213.704738 127.21479 2.104537605 -0.184326 126 87 SH9450 9450 RUF2 RUF2 91 107 28.320137 159.421154 93.8706455 1.972529804 -0.156399 126 88 SH1737 1737 Leu7 5' flank 32.2948 210.120933 121.2078665 2.083530807 -0.296714 126 89 SH2078 2078 Lys4 tRNA-intron/exon 56 72 104.545881 302.110267 203.328074 2.308197347 -0.10386 126 90 SH4534 4534 U3b (snR17b) U3b 226 240 34.016956 156.381659 95.1993075 1.978633789 0.22668 126 91 SH11504 11504 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4406 4423 1291.646113 721.313829 1006.479971 3.002805137 1.374672 126 92 SH20885 20885 YLR275W spliced 31.656397 185.641864 108.6491305 2.036026255 -0.097694 126 93 SH4814 4814 snR5 3' 31.497323 189.978035 110.737679 2.044295417 -0.14269 126 94 SH3294 3294 Thr2 71-72 + 3' flank 71 27.401177 127.581059 77.491118 1.889251927 -0.047166 126 95 SH6942 6942 snR58 snR58 71 88 31.256141 193.108192 112.1821665 2.049923823 -0.179475 126 96 SH18324 18324 YML085C_13_99400_97941_INTRON_26_141 3' exon 31.191022 191.941961 31.191022 161.750939 96.4709805 1.984396693 0.030252 126 97 SH10927 10927 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1521 1536 35.109049 143.84597 89.4775095 1.951713888 0.370646 126 98 SH20859 20859 YLR078C spliced 1035.66826 1043.4459 1039.55708 3.016848341 0.498996 126 99 SH5300 5300 snR30 snR30 351 367 73.925387 256.952807 165.439097 2.218638151 -0.118844 126 100 SH6472 6472 snR45 3' 33.269312 158.210735 95.7400235 1.98109353 0.173321 126 101 SH8851 8851 LSR1 / U2 RNA U2 896 913 194.20521 440.794137 317.4996735 2.501743283 -0.132728 126 102 SH13911 13911 MT COB Cytbi3 29.435301 178.587067 29.435301 150.151766 89.7935335 1.953245062 -0.027721 126 103 SH7655 7655 snoRNA cluster1 5' 30.484651 177.690433 30.484651 148.205782 89.3452165 1.951071306 0.055542 126 104 SH3057 3057 Ser3 5' flank 33.535352 184.707942 109.121647 2.037910912 -0.02011 127 2 SH18972 18972 YOR096W_15_505793_506766_INTRON_145_545 intron 33.319865 197.781411 33.319865 165.461546 99.3907055 1.997345773 0.130631 127 3 SH4337 4337 telomerase RNA telomerase 721 741 28.984843 136.096265 82.540554 1.916667379 0.016892 127 4 SH9748 9748 RUF4 RUF4 516 532 30.997414 177.450058 104.223736 2.017966637 -0.075502 127 5 SH12932 12932 MT COX1 COX1ai2 31.975391 202.33449 31.975391 171.359099 101.667245 2.007181055 0.018053 127 6 SH17104 17104 YHL001W_8_104270_105084_INTRON_130_527 3' exon 37.16031 221.203103 37.16031 185.042793 111.1015515 2.045720124 0.079374 127 7 SH9554 9554 RUF3 RUF3 156 170 1553.896594 1885.363308 1719.629951 3.235435001 0.087304 127 8 SH1094 1094 Gly4 5' flank 30.951006 154.469837 92.7104215 1.967128556 0.053514 127 9 SH750 750 Gln4 tRNA 21 38 37.309176 154.259365 95.7842705 1.981294196 0.411616 127 10 SH11743 11743 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5601 5618 3900.515475 3887.978388 3894.246932 3.590423486 0.158702 127 11 SH5445 5445 snR31 3' 29.103501 161.5857 95.3446005 1.979296103 -0.110698 127 12 SH3699 3699 Val3 5' flank 35.469687 163.940536 99.7051115 1.998717424 0.248334 127 13 SH15746 15746 YCR031C_3_178212_177492_INTRON_8_314 5' exon 31.242769 219.027922 31.242769 188.785153 110.013961 2.041447802 -0.141782 127 14 SH7432 7432 snR69 snR69 61 78 177.712678 360.039124 268.875901 2.429551879 0.126325 127 15 SH8532 8532 snR19 / U1 RNA U1 156 172 33.071551 194.164789 113.61817 2.05544779 -0.121051 127 16 SH9235 9235 snR6 / U6 RNA U6 46 62 165.136618 426.127591 295.6321045 2.470751595 -0.255085 127 17 SH11603 11603 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4901 4920 21841.19769 10405.57858 16123.38814 4.207456309 0.824176 127 18 SH4634 4634 snR3 snR3 86 102 1105.945556 1736.513526 1421.229541 3.152664226 -0.227705 127 19 SH4342 4342 telomerase RNA telomerase 746 764 29.872003 138.523743 84.197873 1.925301121 0.06661 127 20 SH4527 4527 U3b (snR17b) U3b 191 205 50.650019 206.318258 128.4841385 2.108849517 0.035699 127 21 SH17688 17688 YKL006W_11_431544_432358_INTRON_130_527 intron 35.394515 192.337325 35.394515 157.94281 96.6686625 1.98528571 0.290798 127 22 SH10000 10000 RUF5-1 3' 29.307872 172.731175 101.0195235 2.004405316 -0.152892 127 23 SH8226 8226 snoRNA cluster 3; snR51/3' 29.229087 184.65351 29.229087 156.424423 92.826755 1.967673169 -0.075465 127 24 SH16236 16236 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 31.159818 197.140135 31.159818 166.980317 99.0700675 1.995942459 -0.003947 127 25 SH14926 14926 MT tRNA Asn 5' 31.154362 185.62394 31.154362 155.469578 93.31197 1.969937358 0.061879 127 26 SH11221 11221 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2991 3013 33.141304 149.560782 91.351043 1.96071351 0.221575 127 27 SH12598 12598 MT_15S MT_15S 35.150665 224.629722 35.150665 190.479057 112.814861 2.052366313 -0.023022 127 28 SH20951 20951 YLR448W spliced 35.205435 198.731862 116.9686485 2.068069472 -0.114295 127 29 SH7045 7045 snR62 snR62 16 35 31.317587 141.323587 86.320587 1.936114385 0.150004 127 30 SH15826 15826 YDL064W_4_337486_338069_INTRON_39_148 intron/exon 173.764206 568.273534 173.764206 395.509328 284.636767 2.454290998 -0.066296 127 31 SH8338 8338 snoRNA cluster4 snR53 27.510221 186.767848 27.510221 160.257627 93.883924 1.972591233 -0.220854 127 32 SH17361 17361 YIL052C_9_257061_256224_INTRON_38_509 intron 29.592254 189.13525 29.592254 160.542996 95.067625 1.978032644 -0.070892 127 33 SH4951 4951 snR9 snR9 161 178 35.703391 160.628961 98.166176 1.991961874 0.289907 127 34 SH11587 11587 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4821 4834 2107.68803 2034.303122 2070.995576 3.316179171 0.370047 127 35 SH5853 5853 snR35 snR35 451 470 31.926028 184.863799 108.3949135 2.035008903 -0.080446 127 36 SH2358 2358 Phe3 3' flank 29.001134 129.020242 79.010688 1.897685844 0.06025 127 37 SH6029 6029 snR37 snR37 61 80 31.118659 156.624985 93.871822 1.972535247 0.053501 127 38 SH7033 7033 snR62 5' 34.254673 180.737746 107.4962095 2.031393151 0.04198 127 39 SH19151 19151 YPL075W_16_412249_415357_INTRON_9_759 intron 30.250662 210.673822 30.250662 181.42316 105.836911 2.024637156 -0.143586 127 40 SH13807 13807 MT COB Exon2/cytbi2 32.340407 198.299137 32.340407 166.95873 99.6495685 1.998475422 0.065704 127 41 SH1489 1489 Leu3 5' flank 34.414082 162.924967 98.6695245 1.994183035 0.206731 127 42 SH4812 4812 snR5 3' 30.328184 150.880509 90.6043465 1.957149032 0.030373 127 43 SH18992 18992 YOR122C_15_552886_552297_INTRON_14_222 5' exon 30.302707 202.93829 30.302707 173.635583 101.969145 2.008468778 -0.095797 127 44 SH1787 1787 Leu8 5' flank 30.246758 166.517727 98.3822425 1.992916718 -0.056724 127 45 SH15227 15227 MT COX3 cox3 28.128743 173.775322 28.128743 146.646579 87.387661 1.941450115 -0.104436 127 46 SH16161 16161 YDR129C_4_715372_713333_INTRON_22_132 intron 32.067548 187.338764 32.067548 156.271216 94.169382 1.97390972 0.117077 127 47 SH19497 19497 YPT1 31.916063 158.716957 95.31651 1.979168132 0.092447 127 48 SH16534 16534 YER131W_5_423587_424307_INTRON_1_361 intron 29.739911 178.296764 29.739911 149.556853 89.648382 1.952542456 -0.003139 127 49 SH16847 16847 YGL178W_7_167356_170575_INTRON_4_643 3' exon 29.567304 176.503249 29.567304 147.935945 88.7516245 1.948176311 -0.006391 127 50 SH10537 10537 RUF8 RUF8 611 630 29.392192 189.914279 109.6532355 2.040021451 -0.243876 127 51 SH14209 14209 MT ATP9 5' 29.224611 222.930599 29.224611 194.705988 111.9652995 2.049083446 -0.279882 127 52 SH1895 1895 Lys1 5' flank 43.801486 207.831029 125.8162575 2.099736763 -0.07535 127 53 SH14366 14366 MT ORF9 and ORF10 (hypothetical) ORF9 / intergenic 30.908074 185.110444 30.908074 155.20237 93.055222 1.96874075 0.046801 127 54 SH8779 8779 LSR1 / U2 RNA U2 536 548 34.720491 171.230718 102.9756045 2.01273435 0.149342 127 55 SH1890 1890 Lys1 5' flank 126.162625 330.811006 228.4868155 2.358861145 -0.083609 127 56 SH3097 3097 Ser3 3' flank 32.758234 190.473503 111.6158685 2.047725943 -0.100064 127 57 SH2929 2929 Pro8 3' flank 34.783776 178.208163 106.4959695 2.027333172 0.084126 127 58 SH730 730 Gln4 5' flank 125.012505 285.029639 205.021072 2.3117985 0.184692 127 59 SH7688 7688 snoRNA cluster1 intergenic 27.182044 156.840798 27.182044 130.658754 78.920399 1.897189272 -0.083434 127 60 SH8676 8676 LSR1 / U2 RNA U2 21 38 37.14983 169.256999 103.2034145 2.013694066 0.249921 127 61 SH10282 10282 RUF7 RUF7 21 36 38.253037 202.15581 120.2044235 2.07992045 -0.094944 127 62 SH15536 15536 YBR078W_2_393082_394818_INTRON_59_388 intron 25.437491 133.400703 25.437491 108.963212 67.2003515 1.827371545 -0.06806 127 63 SH11812 11812 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5946 5967 45.271955 178.690975 111.981465 2.049146145 0.288115 127 64 SH12456 12456 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank / 5S 29.343417 190.738571 29.343417 162.395154 95.8692855 1.981679491 -0.097709 127 65 SH2059 2059 Lys4 5' flank 49.003343 242.381156 145.6922495 2.163436449 -0.338709 127 66 SH14628 14628 MT 21S rRNA Sce1 endonuc 31.08102 199.586939 31.08102 169.505919 100.2934695 2.001272655 -0.023932 127 67 SH3044 3044 Ser3 5' flank 37.775532 149.575259 93.6753955 1.971625535 0.467808 127 68 SH15599 15599 YBR089C-A_2_426588_426148_INTRON_1_114 intron 28.850717 201.270426 28.850717 173.419709 101.135213 2.004902393 -0.186324 127 69 SH13288 13288 MT COX1 Exon 5a / COX1 ai5 28.755018 170.469775 28.755018 142.714757 85.7348875 1.933157582 -0.03688 127 70 SH14539 14539 MT 21S rRNA 21S rRNA3 26.777232 163.825313 26.777232 138.048081 82.4126565 1.915993913 -0.159886 127 71 SH9846 9846 RUF5-1 RUF5-1 36 57 30.662872 196.178099 113.4204855 2.054691502 -0.229047 127 72 SH2596 2596 Pro3 5' flank 38.526325 182.859026 110.6926755 2.044118885 0.13077 127 73 SH15644 15644 YBR189W_2_604466_605466_INTRON_8_420 5' exon 42.631403 241.787347 42.631403 200.155944 121.3936735 2.084196054 -0.007187 127 74 SH16214 16214 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 34.059394 242.697229 34.059394 209.637835 121.8486145 2.085820595 -0.254063 127 75 SH14733 14733 MT tRNA cys; tRNA his tRNA his 31.356825 203.567468 31.356825 173.210643 102.283734 2.009806574 -0.029384 127 76 SH9095 9095 snR14 / U4 RNA U4 91 107 31.621459 162.768021 97.19474 1.987642762 0.049504 127 77 SH18893 18893 YOL120C_15_94401_93394_INTRON_113_559 intron 31.886847 199.145972 31.886847 168.259125 100.072986 2.000316859 0.031418 127 78 SH6870 6870 snR56 5' 28.080087 157.612973 92.84653 1.967765677 -0.164824 127 79 SH20090 20090 YDL012C spliced 30.310965 160.728045 95.519505 1.980092063 -0.022024 127 80 SH16713 16713 YGL031C_7_438393_437938_INTRON_1_456 intron 30.475567 183.789619 30.475567 154.314052 92.3948095 1.965647574 0.022205 127 81 SH1471 1471 Leu2 3' flank 30.595123 156.152965 93.374044 1.970226168 0.020734 127 82 SH18717 18717 YNL130C_14_381156_379555_INTRON_30_470 intron 30.667967 176.837277 30.667967 147.16931 88.9186385 1.948992804 0.073669 127 83 SH11797 11797 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5871 5889 2490.718061 1735.396998 2113.05753 3.324911321 0.839243 127 84 SH19277 19277 YPL143W_16_282121_282969_INTRON_20_544 intron 32.751935 214.171358 32.751935 182.419423 107.585679 2.031754465 -0.027389 127 85 SH7454 7454 snR69 3' 30.636664 162.985471 96.8110675 1.985925009 -0.011142 127 86 SH11207 11207 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2921 2941 30.560031 141.698973 86.129502 1.935151936 0.096907 127 87 SH8179 8179 snoRNA cluster 3; snR70 38.678439 192.60488 38.678439 154.926441 96.80244 1.985886304 0.447511 127 88 SH10167 10167 RUF6 RUF6 681 695 36.473484 162.304496 99.38899 1.997338277 0.29869 127 89 SH19773 19773 Negative Control 34.266148 178.582183 106.4241655 2.027040253 0.062627 127 90 SH19145 19145 YPL075W_16_412249_415357_INTRON_9_759 intron 28.016679 193.077204 28.016679 166.060525 97.038602 1.986944531 -0.21181 127 91 SH10200 10200 RUF6 RUF6 846 863 29.878331 137.993289 83.93581 1.923947286 0.070046 127 92 SH4764 4764 snR5 5' - 10 10 29.717463 163.324024 96.5207435 1.984620659 -0.076042 127 93 SH21703 21703 copy of SH10878 8695.429749 6935.362475 7815.396112 3.892950994 0.277832 127 94 SH2721 2721 Pro5 5' flank - tRNA2 2 37.383589 211.001674 124.1926315 2.094095829 -0.206613 127 95 SH6483 6483 snR46 5' 31.317831 126.837876 79.0778535 1.898054872 0.234837 127 96 SH8799 8799 LSR1 / U2 RNA U2 636 650 33.227544 173.108094 103.167819 2.01354425 0.078291 127 97 SH13726 13726 MT COB 5'/Exon1 28.268893 171.510225 28.268893 144.241332 86.2551125 1.935784846 -0.081081 127 98 SH19468 19468 ADH1 97.701597 253.193706 175.4476515 2.244147559 0.168261 127 99 SH12516 12516 MT_ORF6 + ORF7 (hypothetical) ORF6/7 25.352915 123.7177 25.352915 99.364785 62.35885 1.794898097 0.00269 127 100 SH1297 1297 Ile2 3' flank 33.321566 164.461359 98.8914625 1.9951588 0.136887 127 101 SH18738 18738 YNL162W_14_331319_332151_INTRON_5_516 intron 33.389497 234.384559 33.389497 201.995062 117.6922795 2.070747974 -0.187233 127 102 SH2083 2083 Lys4 tRNA 81 93 39.449629 196.118332 117.7839805 2.071086227 -0.007168 127 103 SH15150 15150 MT tRNA Thr1 reverse complement 3' 29.500174 173.800417 29.500174 145.300243 87.4002085 1.941512469 0.00301 127 104 SH4507 4507 U3b (snR17b) U3b 91 108 49.685574 163.096769 106.3911715 2.026905591 0.55262 128 2 SH1257 1257 Ile2 5' flank 31.090909 159.760584 95.4257465 1.979665566 0.035592 128 3 SH15287 15287 MT 9S rRNA 9S 33.083028 232.72335 33.083028 200.640322 116.861675 2.067672107 -0.179101 128 4 SH8544 8544 snR19 / U1 RNA U1 216 233 30.891229 154.683443 92.787336 1.967488706 0.048383 128 5 SH21294 21294 YPL175W spliced 43.346797 187.705612 115.5262045 2.062680505 0.149563 128 6 SH7728 7728 snoRNA cluster1 intergenic 34.953918 227.057377 34.953918 193.103459 114.0286885 2.057014129 -0.056795 128 7 SH17141 17141 YHR010W_8_126513_127484_INTRON_32_592 intron 38.083753 213.411236 38.083753 176.327483 107.205618 2.030217545 0.201812 128 8 SH6416 6416 snR45 5' 35.014813 176.192751 105.603782 2.023679472 0.111249 128 9 SH10819 10819 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 981 999 179.562986 425.147488 302.355237 2.480517495 -0.157575 128 10 SH4548 4548 U3b (snR17b) U3b 296 315 33.119254 169.689777 101.4045155 2.006057294 0.093705 128 11 SH11102 11102 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2396 2413 56.364007 177.05652 116.7102635 2.06710905 0.445457 128 12 SH15360 15360 YBL026W_2_170585_171000_INTRON_55_182 intron/exon 31.16074 232.307487 31.16074 202.146747 116.6537435 2.06689868 -0.260327 128 13 SH12518 12518 MT_ORF6 + ORF7 (hypothetical) ORF6/7 31.144847 221.137368 31.144847 190.992521 111.068684 2.045591626 -0.165159 128 14 SH20176 20176 YDL189W spliced 180.230144 373.405727 276.8179355 2.442194225 0.076612 128 15 SH13425 13425 MT COX1 intronic 28.790828 185.358264 28.790828 157.567436 93.179132 1.969318661 -0.112715 128 16 SH7439 7439 snR69 96-101 + 3' 96 30.623683 186.747257 108.68547 2.036171488 -0.150062 128 17 SH2223 2223 Phe1 5' flank - tRNA7 7 34.426111 174.572006 104.4990585 2.019112378 0.106531 128 18 SH12125 12125 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7511 7528 42.203613 209.601527 125.90257 2.100034595 -0.118051 128 19 SH3926 3926 RNase MRP RNaseMRP 46 67 27.756416 132.678734 80.217575 1.904269529 -0.053144 128 20 SH2116 2116 Met1 5' flank 31.517793 166.015388 98.7665905 1.994610062 0.023295 128 21 SH12917 12917 MT COX1 COX1ai2 34.29627 222.652816 34.29627 189.356546 111.826408 2.048544375 -0.035176 128 22 SH20665 20665 YIL052C spliced 43.035085 198.929513 120.982299 2.082721833 0.012515 128 23 SH5189 5189 snR13 snR13 101 121 29.146971 137.358241 83.252606 1.920397837 0.021446 128 24 SH14109 14109 MT COB intronic 33.02571 192.16178 33.02571 160.13607 96.58089 1.984891203 0.147293 128 25 SH4787 4787 snR5 snR5 106 125 31.03946 147.158963 89.0992115 1.949873861 0.098714 128 26 SH21391 21391 Phe1_5 spliced 195.061316 358.741662 276.901489 2.442325291 0.235354 128 27 SH10409 10409 RUF8 5' 31.031675 187.018611 109.025143 2.037526665 -0.134039 128 28 SH17658 17658 YKL002W_11_437416_438182_INTRON_61_128 intron 31.045224 188.61983 31.045224 158.574606 94.809915 1.976853757 0.038576 128 29 SH2632 2632 Pro3 3' flank 33.037516 139.347466 86.192491 1.935469432 0.272365 128 30 SH12163 12163 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7701 7717 520.744237 841.624355 681.184296 2.833264627 -0.023108 128 31 SH15596 15596 YBR089C-A_2_426588_426148_INTRON_1_114 intron 31.195368 208.491375 31.195368 178.296007 104.7456875 2.020136152 -0.068434 128 32 SH3271 3271 Thr2 5' flank 88.955293 273.641872 181.2985825 2.258394409 -0.071175 128 33 SH132 132 Arg1 36-50 36 50 35.372291 189.880064 112.6261775 2.051639345 -0.011716 128 34 SH14229 14229 MT ATP9 ATP9/3 29.541713 213.726727 29.541713 185.185014 107.3633635 2.030856109 -0.208769 128 35 SH12250 12250 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.676118 228.835071 37.676118 192.158953 114.9175355 2.060386304 0.006942 128 36 SH14050 14050 MT COB Cytbi4 31.81073 211.537394 31.81073 180.726664 106.268697 2.026405356 -0.046587 128 37 SH2067 2067 Lys4 tRNA 1 17 119.859828 212.092181 165.9760045 2.220045306 0.705318 128 38 SH15079 15079 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.047603 168.29498 30.047603 139.247377 84.64749 1.927614085 0.074894 128 39 SH12808 12808 MT COX1 COX1ai1 28.119214 176.252462 28.119214 149.133248 88.626231 1.94756228 -0.118254 128 40 SH4702 4702 snR4 snR4 46 65 30.230179 147.392427 88.811303 1.948468242 0.042603 128 41 SH19784 19784 Negative Control 30.284777 176.352494 103.3186355 2.014178662 -0.112678 128 42 SH14496 14496 MT 21S rRNA 21S rRNA3 40.533208 242.531012 40.533208 202.997804 121.765506 2.085524278 -0.069694 128 43 SH19261 19261 YPL143W_16_282121_282969_INTRON_20_544 intron 32.341315 187.867911 32.341315 156.526596 94.4339555 1.975128181 0.131309 128 44 SH16784 16784 YGL103W_7_310965_311925_INTRON_50_560 intron 30.255261 171.352508 30.255261 142.097247 86.176254 1.935387612 0.07361 128 45 SH14809 14809 "MT tRNAs (Lys, Arg1, Gly)" intergenic 28.144567 181.553972 28.144567 154.409405 91.276986 1.960361291 -0.14345 128 46 SH8672 8672 LSR1 / U2 RNA U2 1 17 32.09256 142.022967 87.0577635 1.939807506 0.196734 128 47 SH14015 14015 MT COB Exon4 33.965306 203.095078 33.965306 170.129772 102.047539 2.008802536 0.133884 128 48 SH19986 19986 YBL092W spliced 40.824796 218.238146 129.531471 2.112375298 -0.230008 128 49 SH15142 15142 MT tRNA Thr1 reverse complement 5' 29.606099 187.832323 29.606099 159.226224 94.4161615 1.97504634 -0.063249 128 50 SH21685 21685 copy of SH10240 31.418229 191.531621 111.474925 2.047177189 -0.159446 128 51 SH4098 4098 SRP RNA SRP RNA 381 393 41.123052 209.247207 125.1851295 2.097552743 -0.130315 128 52 SH4721 4721 snR4 snR4 141 157 35.012891 140.102234 87.5575625 1.942293663 0.388507 128 53 SH5422 5422 snR31 snR31 176 192 33.890563 170.367055 102.128809 2.009148267 0.128893 128 54 SH9881 9881 RUF5-1 RUF5-1 211 225 32.821281 161.48802 97.1546505 1.987463594 0.127144 128 55 SH5647 5647 snR34 snR34 156 175 30.835669 153.67893 92.2572995 1.965000738 0.049925 128 56 SH8425 8425 snoRNA cluster 5 intergenic 30.853618 166.895849 30.853618 137.042231 83.9479245 1.924009963 0.143084 128 57 SH4966 4966 snR9 3' 32.873255 149.826257 91.349756 1.960707392 0.203285 128 58 SH15573 15573 YBR084C-A_2_415219_414144_INTRON_3_508 intron 31.021771 175.326915 31.021771 145.305144 88.1634575 1.945288614 0.107801 128 59 SH2836 2836 Pro7 5' flank - tRNA3 3 44.935931 201.467723 123.201827 2.090617148 0.010863 128 60 SH17826 17826 YKR057W_11_551293_551878_INTRON_25_346 3' exon 31.257764 221.767327 31.257764 191.509563 111.3836635 2.046821498 -0.165385 128 61 SH17382 17382 YIL052C_9_257061_256224_INTRON_38_509 3' exon 31.350194 236.243256 31.350194 205.893062 118.621628 2.07416388 -0.284052 128 62 SH15044 15044 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.419922 166.811322 29.419922 138.3914 83.905661 1.923791263 0.035238 128 63 SH8471 8471 snoRNA cluster 5 3' 33.387479 205.228267 33.387479 172.840788 103.1141335 2.013318197 0.086651 128 64 SH1640 1640 Leu5 tRNA-intron/exon 66 82 286.290705 460.72698 373.5088425 2.572300888 0.242521 128 65 SH5912 5912 snR36 snR36 16 35 96.768936 304.36416 200.566548 2.3022585 -0.19433 128 66 SH9323 9323 RUF1 RUF1 191 212 31.129286 143.188823 87.1590545 1.94031251 0.126866 128 67 SH3577 3577 Tyr2 3' flank 29.035247 145.001454 87.0183505 1.939610847 -0.028842 128 68 SH14685 14685 MT 21S rRNA 21S rRNA4 30.867079 192.461402 30.867079 162.594323 96.730701 1.985564335 0.005451 128 69 SH16218 16218 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 30.778609 220.249439 30.778609 190.47083 110.6247195 2.043852183 -0.174713 128 70 SH1388 1388 Leu1 tRNA 11 23 77.585756 219.852927 148.7193415 2.172367454 0.236402 128 71 SH501 501 Asp2 66-72 + 3'flank 66 82 34.66527 132.323275 83.4942725 1.921656685 0.414076 128 72 SH8667 8667 LSR1 / U2 RNA 5' 32.827847 120.617785 76.722816 1.884924535 0.373198 128 73 SH21409 21409 Ser3 spliced 31.043377 168.439474 99.7414255 1.998875571 -0.019785 128 74 SH8454 8454 snoRNA cluster 5 snR128 46.095257 210.720526 46.095257 165.625269 105.860263 2.024732969 0.47245 128 75 SH15684 15684 YBR191W_2_606228_607098_INTRON_12_399 intron 37.492019 219.729579 37.492019 183.23756 110.3647895 2.042830539 0.107013 128 76 SH12796 12796 MT COX1 COX1ai1 35.807011 232.803646 35.807011 197.996635 116.901823 2.067821284 -0.094235 128 77 SH17468 17468 YIL148W_9_68708_69528_INTRON_9_442 intron/exon 30.03809 177.497026 30.03809 148.458936 89.248513 1.950600989 0.023534 128 78 SH18017 18017 YLR306W_12_744151_744851_INTRON_4_137 5' exon 35.375364 250.206983 35.375364 215.831619 125.6034915 2.099001712 -0.291471 128 79 SH2472 2472 Phe5 3' flank 32.529492 188.133574 110.331533 2.042699653 -0.0876 128 80 SH14182 14182 MT COB Exon6 30.634284 175.058025 30.634284 145.423741 88.0290125 1.94462583 0.081054 128 81 SH14589 14589 MT 21S rRNA Sce1 endonuc 30.742317 231.453751 30.742317 201.711434 116.2268755 2.065306563 -0.272884 128 82 SH15673 15673 YBR191W_2_606228_607098_INTRON_12_399 intron 32.874467 229.0239 32.874467 197.149433 115.01195 2.060742967 -0.153952 128 83 SH21637 21637 copy of SH8142 2341.311469 2963.535663 2652.423566 3.423642878 -0.080064 128 84 SH4248 4248 telomerase RNA telomerase 276 295 30.771822 150.707158 90.73949 1.957796334 0.061442 128 85 SH21089 21089 YNL012W spliced 46.253919 216.086328 131.1701235 2.117834927 -0.12837 128 86 SH2662 2662 Pro4 5' flank 32.667687 143.669619 88.168653 1.945314206 0.224258 128 87 SH15200 15200 MT COX3 cox3 30.485518 196.425245 30.485518 166.939727 98.7126225 1.99437269 -0.044597 128 88 SH19463 19463 CYC1 34.441662 159.71588 97.078771 1.98712427 0.22844 128 89 SH1059 1059 Gly3 tRNA 31 45 273.095242 428.555524 350.825383 2.545091008 0.309536 128 90 SH7424 7424 snR69 snR69 21 38 34.089704 172.788826 103.439265 2.014685426 0.112093 128 91 SH1063 1063 Gly3 tRNA 51 63 12183.80649 5891.66495 9037.735722 3.956059638 0.973835 128 92 SH2467 2467 Phe5 3' flank 31.717061 144.214757 87.965909 1.944314395 0.159903 128 93 SH21519 21519 copy of SH3380 31.559006 127.973464 79.766235 1.901819094 0.244048 128 94 SH21821 21821 copy of SH16001 29.440414 148.579865 89.0101395 1.949439482 -0.018835 128 95 SH11526 11526 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4516 4534 13995.40198 4457.701524 9226.551753 3.965039422 1.597078 128 96 SH16723 16723 YGL033W_7_435621_436347_INTRON_56_125 exon/intron 68.977523 346.794842 68.977523 278.817319 173.897421 2.240293141 -0.3435 128 97 SH13219 13219 MT COX1 COX1-ai4 31.241149 251.998548 31.241149 221.757399 126.499274 2.102088033 -0.437572 128 98 SH17012 17012 YGR148C_7_788173_787307_INTRON_1_392 intron 37.1877 243.645036 37.1877 207.457336 122.322518 2.087506412 -0.171053 128 99 SH5538 5538 snR33 5' 30.303642 149.743581 90.0236115 1.954356432 0.03482 128 100 SH903 903 Glu3 tRNA 26 40 149.008698 327.073385 238.0410415 2.376651842 0.110776 128 101 SH9618 9618 RUF3 3' 31.397183 143.967801 87.682492 1.942912884 0.140255 128 102 SH6420 6420 snR45 5' 31.44089 174.73751 103.0892 2.013213169 -0.033296 128 103 SH10318 10318 RUF7 RUF7 201 216 33.469205 155.569405 94.519305 1.97552052 0.201624 128 104 SH6863 6863 snR56 5' 31.477518 165.042692 98.260105 1.992377224 0.026875 129 2 SH5339 5339 snR30 snR30 546 563 35.182895 198.478517 116.830706 2.067557001 -0.11197 129 3 SH21845 21845 copy of SH17380 26.690003 135.538797 81.1144 1.90909796 -0.151394 129 4 SH5309 5309 snR30 snR30 396 412 41.214424 198.140546 119.677485 2.078012454 -0.004347 129 5 SH14745 14745 MT ORF11; tRNA Leu; tRNA Gln 5' 28.649115 173.517835 28.649115 145.86872 87.2589175 1.940809821 -0.061686 129 6 SH17178 17178 YHR021C_8_148660_147862_INTRON_4_553 intron 36.920025 227.128044 36.920025 191.208019 114.064022 2.057148681 0.003404 129 7 SH18631 18631 YNL096C_14_444312_443395_INTRON_145_489 intron 30.711385 182.123901 30.711385 152.412516 91.5619505 1.961715036 0.048246 129 8 SH1188 1188 Ile1 5' flank 66.196374 206.024253 136.1103135 2.133891034 0.236952 129 9 SH8759 8759 LSR1 / U2 RNA U2 436 453 30.845674 170.56019 100.702932 2.003042115 -0.044441 129 10 SH21098 21098 YNL044W spliced 35.114307 184.680588 109.8974475 2.040987606 0.035255 129 11 SH21871 21871 copy of SH18601 28.932497 171.137175 100.034836 2.000151264 -0.169451 129 12 SH7824 7824 snoRNA cluster1 intergenic 28.97082 165.063234 28.97082 137.092414 83.031617 1.919243496 0.010189 129 13 SH1854 1854 Leu9 tRNA 11 25 2128.908799 2732.221847 2430.565323 3.385707298 -0.077957 129 14 SH538 538 Cys1 5' flank - tRNA8 5' flank 8 30.930932 178.325504 104.628218 2.019648829 -0.084516 129 15 SH13907 13907 MT COB Cytbi3 28.671155 181.143648 28.671155 153.472493 91.071824 1.959384035 -0.100028 129 16 SH15435 15435 YBL072C_2_89435_88518_INTRON_1_308 intron 32.543765 233.565188 32.543765 202.021423 117.282594 2.069233563 -0.207258 129 17 SH21186 21186 YOL047C spliced 33.252008 186.26099 109.756499 2.040430246 -0.044404 129 18 SH1930 1930 Lys1 3' flank 33.936883 143.781996 88.8594395 1.94870357 0.302727 129 19 SH2449 2449 Phe5 tRNA 16 28 57.699675 208.258327 132.979001 2.123783066 0.107923 129 20 SH7592 7592 snR189 snR189 31 48 60.259039 167.953877 114.106458 2.057310225 0.607299 129 21 SH3847 3847 RNaseP RNaseP 201 218 29.246878 180.883935 105.0654065 2.021459745 -0.203644 129 22 SH14215 14215 MT ATP9 ATP9 859.578385 2556.353584 859.578385 1697.775199 1278.676792 3.106760783 -0.518885 129 23 SH8560 8560 snR19 / U1 RNA U1 296 313 32.966899 176.397124 104.6820115 2.019872059 0.037097 129 24 SH10992 10992 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1846 1866 2037.665401 1749.305113 1893.485257 3.277261928 0.561567 129 25 SH4986 4986 snR10 5' 28.957154 146.118482 87.537818 1.942195717 -0.040495 129 26 SH15936 15936 YDL115C_4_255042_253994_INTRON_1_88 intron 30.871772 202.311034 30.871772 172.439262 101.655517 2.007130953 -0.053992 129 27 SH11750 11750 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5636 5649 115.750344 222.594439 169.1723915 2.228329489 0.578661 129 28 SH7430 7430 snR69 snR69 51 70 28.873451 136.155522 82.5144865 1.916530201 0.008443 129 29 SH18019 18019 YLR306W_12_744151_744851_INTRON_4_137 exon/intron 30.814679 225.511839 30.814679 195.69716 113.2559195 2.05406091 -0.218988 129 30 SH11493 11493 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4351 4368 922.94447 1339.010931 1130.977701 3.053454042 -0.048359 129 31 SH8593 8593 snR19 / U1 RNA U1 461 473 38.695689 169.346099 104.020894 2.017120582 0.297872 129 32 SH5092 5092 snR11 snR11 61 79 29.011272 140.835558 84.923415 1.92902745 -0.007865 129 33 SH15623 15623 YBR181C_2_592732_591670_INTRON_7_358 intron 29.114829 199.553831 29.114829 171.439002 100.2769155 2.001200967 -0.157841 129 34 SH10493 10493 RUF8 RUF8 391 408 29.2415 172.576497 100.9089985 2.003929896 -0.156221 129 35 SH17939 17939 YLR093C_12_327416_326514_INTRON_17_157 intron/exon 27.40651 154.932612 27.40651 128.526102 77.966306 1.891906958 -0.052882 129 36 SH7364 7364 snR68 snR68 41 53 401.261121 562.838896 482.0500085 2.683092095 0.31514 129 37 SH16340 16340 YDR500C_4_1450856_1450201_INTRON_8_396 intron 31.6951 202.920623 31.6951 172.225523 101.9603115 2.008431154 -0.00353 129 38 SH16848 16848 YGL183C_7_157071_156547_INTRON_4_86 5' exon 239.033283 695.68528 239.033283 457.651997 348.34264 2.542006639 0.040977 129 39 SH18193 18193 YML024W_13_225889_226697_INTRON_4_401 intron 34.020127 213.798939 34.020127 180.778812 107.3994695 2.031002136 0.033366 129 40 SH20310 20310 YER007C-A spliced 30.091641 179.949017 105.020329 2.021273374 -0.145149 129 41 SH7797 7797 snoRNA cluster1 snR75 36.279848 218.937195 36.279848 183.657347 109.9685975 2.041268686 0.078777 129 42 SH21036 21036 YMR125W spliced 36.339963 182.940278 109.6401205 2.039969504 0.088468 129 43 SH18425 18425 YMR142C_13_551206_550205_INTRON_5_406 5' exon 28.202334 188.943363 28.202334 161.741029 94.9716815 1.977594127 -0.176753 129 44 SH20112 20112 YDL064W spliced 181.469733 395.430956 288.4503445 2.460071062 -0.017552 129 45 SH20283 20283 YDR471W spliced 40.321221 170.550654 105.4359375 2.022988664 0.314749 129 46 SH6959 6959 snR58 3' 30.055749 149.61359 89.8346695 1.953443974 0.018477 129 47 SH14506 14506 MT 21S rRNA 21S rRNA3 35.98913 209.816567 35.98913 174.827437 105.4082835 2.022874741 0.157254 129 48 SH21293 21293 YPL175W spliced 33.808461 203.29207 118.5502655 2.073902531 -0.192351 129 49 SH2444 2444 Phe5 5' flank - tRNA8 8 35.632506 227.252198 131.442352 2.118735322 -0.404956 129 50 SH2103 2103 Met1 5' flank 29.477239 145.606636 87.5419375 1.942216154 -0.00027 129 51 SH15917 15917 YDL083C_4_307788_306925_INTRON_25_456 intron 29.321671 155.002122 29.321671 126.680451 78.001061 1.89210051 0.098024 129 52 SH21701 21701 copy of SH10876 473.416111 810.327697 641.871904 2.807448366 -0.080509 129 53 SH11644 11644 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5106 5119 18269.4788 17117.58676 17693.53278 4.247814555 -0.198656 129 54 SH11512 11512 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4446 4461 332.921615 560.641956 446.7817855 2.650095459 0.094223 129 55 SH3438 3438 Trp1 tRNA 21 35 95.708073 241.763051 168.735562 2.227206622 0.237965 129 56 SH16284 16284 YDR447C_4_1355542_1354818_INTRON_4_317 intron/exon 46.589684 250.82606 46.589684 205.236376 125.91303 2.100070675 -0.007868 129 57 SH438 438 Asp1 tRNA 11 27 709.477962 945.932851 827.7054065 2.917875792 0.175922 129 58 SH1380 1380 Leu1 5' flank 31.087561 172.284302 101.6859315 2.007260871 -0.040057 129 59 SH1621 1621 Leu5 5' flank 29.231324 137.208823 83.2200735 1.920228095 0.028381 129 60 SH2703 2703 Pro4 3' flank 29.333904 163.877368 96.605636 1.985002464 -0.105742 129 61 SH15814 15814 YDL061C_4_341182_340627_INTRON_1_408 intron 29.414482 167.458182 29.414482 139.0437 84.229091 1.925462114 0.031184 129 62 SH4395 4395 telomerase RNA telomerase 1011 1031 27.475196 135.953017 81.7141065 1.912297036 -0.094291 129 63 SH20659 20659 YIL018W spliced 33.429106 182.533957 107.9815315 2.033349483 -0.003933 129 64 SH11655 11655 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5161 5177 22248.33808 16148.79454 19198.56631 4.283268798 0.14924 129 65 SH9840 9840 RUF5-1 RUF5-1 6 27 31.302565 190.047455 110.67501 2.04404957 -0.150737 129 66 SH7271 7271 snR65 3' 31.184216 172.887875 102.0360455 2.008753619 -0.037807 129 67 SH3403 3403 Thr4 3' flank 29.097969 125.593469 77.345719 1.888436281 0.089415 129 68 SH11293 11293 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3351 3367 65.292098 224.43616 144.864129 2.16096086 0.048547 129 69 SH389 389 Asn1 26-41 26 41 32.82386 176.791094 104.807477 2.020392266 0.028123 129 70 SH20740 20740 YJL191W spliced 30.85361 180.453109 105.6533595 2.023883311 -0.101245 129 71 SH3016 3016 Ser2 tRNA 41 55 28.947661 128.157271 78.552466 1.895159823 0.062016 129 72 SH15549 15549 YBR078W_2_393082_394818_INTRON_59_388 intron 29.052014 206.428699 29.052014 178.376685 103.7143495 2.015838848 -0.20196 129 73 SH8035 8035 snoRNA cluster 2 snR55 35.122203 186.07319 35.122203 151.950987 93.536595 1.970981556 0.315654 129 74 SH13860 13860 MT COB Cytbi2 29.42389 151.570729 29.42389 123.146839 76.2853645 1.882441226 0.128627 129 75 SH4377 4377 telomerase RNA telomerase 921 937 31.66347 169.540805 100.6021375 2.002607208 0.010566 129 76 SH8756 8756 LSR1 / U2 RNA U2 421 438 42.031967 161.851407 101.941687 2.008351816 0.458168 129 77 SH15140 15140 MT tRNA Thr1 reverse complement 5' 28.139247 142.204809 28.139247 115.065562 71.6024045 1.854927607 0.093177 129 78 SH16226 16226 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 30.399112 180.677324 30.399112 151.278212 90.838662 1.958270729 0.033088 129 79 SH2785 2785 Pro6 tRNA 16 32 159.222868 267.280413 213.2516405 2.328892381 0.551843 129 80 SH3647 3647 Val2 5' flank 30.735811 147.805661 89.270736 1.950709115 0.07476 129 81 SH1196 1196 Ile1 5' flank 29.788774 143.942572 86.865673 1.938848189 0.03083 129 82 SH2227 2227 Phe1 tRNA 11 25 372.745991 516.11324 444.4296155 2.647802991 0.36972 129 83 SH14914 14914 MT tRNA Tyr tRNA 35.010597 188.425361 35.010597 154.414764 94.7126805 1.976408128 0.293363 129 84 SH11412 11412 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3946 3961 477.730886 735.520071 606.6254785 2.782920647 0.089257 129 85 SH16424 16424 YER074W_5_306319_307192_INTRON_4_469 exon/intron 32.772517 223.69168 32.772517 191.919163 112.34584 2.050556996 -0.112301 129 86 SH5716 5716 snR34 snR34 501 518 49.185752 230.236684 139.711218 2.145231279 -0.22555 129 87 SH10592 10592 RUF8 RUF8 886 902 30.450768 163.508307 96.9795375 1.986680109 -0.026367 129 88 SH13822 13822 MT COB Cytbi2 28.26051 164.124739 28.26051 136.864229 82.5623695 1.916782149 -0.040794 129 89 SH11838 11838 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6076 6093 3271.124583 1783.473572 2527.299078 3.402656639 1.156739 129 90 SH14433 14433 MT 21S rRNA 21S rRNA3 348.156099 991.403532 348.156099 644.247433 496.201766 2.695658306 -0.083043 129 91 SH12667 12667 MT_15S 3' 31.822783 186.311244 31.822783 155.488461 93.655622 1.971533853 0.105835 129 92 SH3901 3901 RNase MRP 5' 31.653851 151.302705 91.478278 1.961317981 0.116896 129 93 SH8826 8826 LSR1 / U2 RNA U2 771 791 29.511908 128.870312 79.19111 1.89867643 0.097361 129 94 SH16696 16696 YGL031C_7_438393_437938_INTRON_1_456 intron 31.374474 183.225833 31.374474 152.851359 92.1129165 1.964320533 0.090248 129 95 SH4738 4738 snR4 3' 38.20676 148.895714 93.551237 1.971049534 0.493654 129 96 SH6797 6797 snR50 3' 27.284444 129.850451 78.5674475 1.895242644 -0.070558 129 97 SH21039 21039 YMR133W spliced 29.240079 167.872738 98.5564085 1.993684869 -0.131904 129 98 SH8308 8308 snoRNA cluster4 intergenic 31.227363 209.754153 31.227363 179.52679 105.3770765 2.022746146 -0.073507 129 99 SH2633 2633 Pro3 3' flank 29.287316 152.035148 90.661232 1.957421616 -0.048278 129 100 SH5259 5259 snR30 snR30 146 158 31.308358 197.738473 114.5234155 2.058894292 -0.217459 129 101 SH9566 9566 RUF3 RUF3 216 232 29.364789 120.930987 75.147888 1.875916779 0.139539 129 102 SH5554 5554 snR33 snR33 56 74 29.388901 182.589139 105.98902 2.025260877 -0.204121 129 103 SH16231 16231 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.394649 197.721346 29.394649 169.326697 99.360673 1.997214524 -0.127948 129 104 SH17452 17452 YIL148W_9_68708_69528_INTRON_9_442 intron 31.376676 209.953071 31.376676 179.576395 105.4765355 2.023155856 -0.06487 130 2 SH21514 21514 copy of SH3109 28.743085 165.49746 97.1202725 1.987309892 -0.155937 130 3 SH19080 19080 YOR293W_15_867094_867848_INTRON_53_489 intron 30.747143 178.481403 30.747143 148.73426 89.7407015 1.95298946 0.070451 130 4 SH14085 14085 MT COB Cytbi4 28.601145 164.60889 28.601145 137.007745 82.804445 1.918053651 -0.016377 130 5 SH8385 8385 snoRNA cluster 5 5'/snR190 32.697251 189.288721 32.697251 157.59147 95.1443605 1.978383051 0.144882 130 6 SH15291 15291 MT 9S rRNA 9S 30.613514 181.813079 30.613514 152.199565 91.4065395 1.960977268 0.042755 130 7 SH158 158 Arg2 5' flank 34.772344 202.698038 118.735191 2.074579455 -0.166089 130 8 SH19404 19404 YPR063C_16_678315_677807_INTRON_42_127 3' exon 106.513702 336.008499 106.513702 230.494797 168.5042495 2.226610858 0.43207 130 9 SH1844 1844 Leu9 5' flank 28.705271 157.726688 93.2159795 1.969490367 -0.11971 130 10 SH2857 2857 Pro7 tRNA 91 103 76.914892 204.768786 140.841839 2.148731687 0.373417 130 11 SH8394 8394 snoRNA cluster 5 snR190 39.301046 230.658677 39.301046 192.357631 115.8293385 2.063818576 0.034565 130 12 SH18367 18367 YMR079W_13_424988_426058_INTRON_10_165 intron 28.888501 149.020755 28.888501 121.132254 75.0103775 1.875121351 0.10453 130 13 SH12446 12446 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 41.376912 235.174004 41.376912 194.797092 118.087002 2.072202097 0.036905 130 14 SH19445 19445 CYC1 30.811646 169.707971 100.2598085 2.001126871 -0.041415 130 15 SH21658 21658 copy of SH8993 34.737916 161.455587 98.0967515 1.991654626 0.233444 130 16 SH1714 1714 Leu6 3' flank 28.302209 127.138509 77.720359 1.890534798 0.022254 130 17 SH16104 16104 YDR064W_4_579453_580447_INTRON_22_560 5' exon 338.9967 924.905695 338.9967 586.908995 462.9528475 2.66553676 0.039666 130 18 SH8517 8517 snR19 / U1 RNA U1 81 102 31.76965 136.417806 84.093728 1.924763606 0.208262 130 19 SH10414 10414 RUF8 5' - 15 -4 15 33.482409 183.101064 108.2917365 2.034595318 -0.007259 130 20 SH3813 3813 RNaseP RNaseP 31 47 37.196541 190.723645 113.960093 2.056752795 0.014207 130 21 SH8969 8969 snR17a / U3a U3a 131 147 29.133971 175.024582 102.0792765 2.008937583 -0.177419 130 22 SH16671 16671 YFR032C-A_6_223758_223245_INTRON_1_331 intron 32.933896 203.789554 32.933896 171.855658 102.394777 2.010277805 0.070327 130 23 SH3895 3895 RNaseP 3' 26.993098 149.961548 88.477323 1.946831974 -0.20865 130 24 SH3650 3650 Val2 5' flank - tRNA8 8 32.773021 167.247235 100.010128 2.000043983 0.08879 130 25 SH9475 9475 RUF2 RUF2 216 233 32.708749 181.496642 107.1026955 2.029800401 -0.020412 130 26 SH3507 3507 Tyr1 tRNA 76 88 84.346479 288.799842 186.5731605 2.270849168 -0.226059 130 27 SH12061 12061 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7191 7206 55.884713 221.847854 138.8662835 2.142596813 -0.050755 130 28 SH6885 6885 snR56 snR56 56 73 32.522882 169.202159 100.8625205 2.003729817 0.06266 130 29 SH12678 12678 MT tRNA Trp 5' / tRNA 28.626817 190.130733 28.626817 162.503916 95.5653665 1.98030053 -0.149561 130 30 SH241 241 Arg3 61-72 + 3' flank 61 3' flank 89.768638 261.692992 175.730815 2.244847923 0.023819 130 31 SH9453 9453 RUF2 RUF2 106 121 30.576912 142.737942 86.657427 1.93780579 0.092265 130 32 SH14136 14136 MT COB intronic 30.642536 183.371934 30.642536 153.729398 92.185967 1.964664816 0.036619 130 33 SH793 793 Glu1 5' flank 34.629572 176.094809 105.3621905 2.022684791 0.098934 130 34 SH3560 3560 Tyr2 tRNA 71 83 32.828632 164.870617 98.8496245 1.994975024 0.106501 130 35 SH8459 8459 snoRNA cluster 5 snR128 40.851228 228.650664 40.851228 188.799436 114.825332 2.06003771 0.100699 130 36 SH9007 9007 snR17a / U3a U3a 321 338 35.158676 152.072185 93.6154305 1.971347439 0.316784 130 37 SH19636 19636 RNA14 2.2 33.382794 161.495873 97.4393335 1.988734305 0.158806 130 38 SH12944 12944 MT COX1 COX1ai2 30.58635 212.683246 30.58635 183.096896 106.841623 2.028740477 -0.132286 130 39 SH20595 20595 YHR039C-A spliced 35.769398 197.368272 116.568835 2.066582456 -0.088056 130 40 SH4432 4432 telomerase RNA telomerase 1196 1210 31.907136 172.774413 102.3407745 2.010048699 0.005702 130 41 SH1907 1907 Lys1 5' flank - tRNA9 9 34.05089 161.86191 97.9564 1.991032816 0.193549 130 42 SH14342 14342 MT VAR1 includes 5’ processing site VAR1 32.110601 188.955002 32.110601 157.844401 94.977501 1.977620738 0.109408 130 43 SH13381 13381 MT COX1 Exon 5b 30.12211 194.928982 30.12211 165.806872 97.964491 1.991068686 -0.060197 130 44 SH18166 18166 YLR448W_12_1028848_1029762_INTRON_16_399 intron 30.120887 204.94685 30.120887 175.825963 102.973425 2.012725158 -0.119783 130 45 SH10489 10489 RUF8 RUF8 371 389 28.056288 135.377903 81.7170955 1.912312922 -0.047559 130 46 SH2175 2175 Met2 tRNA 6 18 54.34807 198.906485 126.6272775 2.10252727 0.164557 130 47 SH3967 3967 RNase MRP RNaseMRP 251 270 30.917059 179.058675 104.987867 2.021139112 -0.089523 130 48 SH15278 15278 MT 9S rRNA 9S 29.788476 236.18015 29.788476 207.391674 118.590075 2.074048344 -0.357503 130 49 SH3124 3124 Ser4 tRNA 26 41 37.653461 196.373421 117.013441 2.068235751 -0.040734 130 50 SH20637 20637 YHR141C spliced 33.489635 195.321207 114.405421 2.058446604 -0.116022 130 51 SH14707 14707 MT tRNA thr2 3' 29.370674 193.08538 29.370674 164.714706 97.04269 1.986962827 -0.107271 130 52 SH14261 14261 MT VAR1 includes 5’ processing site 5' 29.242663 188.415872 29.242663 160.173209 94.707936 1.976386372 -0.093686 130 53 SH16153 16153 YDR092W_4_629869_630598_INTRON_31_298 3' exon 33.067238 220.798615 33.067238 188.731377 110.8993075 2.044928834 -0.073313 130 54 SH1124 1124 Gly4 3' flank 31.027768 143.68765 87.357709 1.941301236 0.11727 130 55 SH4253 4253 telomerase RNA telomerase 301 319 30.998619 172.331719 101.665169 2.007172187 -0.045693 130 56 SH16602 16602 YFL034C-A_6_64931_64242_INTRON_13_333 3' exon 29.058833 160.323836 29.058833 132.265003 80.661918 1.906668545 0.044514 130 57 SH16972 16972 YGR034W_7_555923_556666_INTRON_20_496 intron 31.078511 184.739756 31.078511 154.661245 92.869878 1.967874875 0.061043 130 58 SH583 583 Gln1 5' flank 29.202769 171.561362 100.3820655 2.001656128 -0.152704 130 59 SH7780 7780 snoRNA cluster1 intergenic 29.301889 169.632777 29.301889 141.330888 85.3163885 1.931032463 0.010392 130 60 SH9005 9005 snR17a / U3a U3a 311 323 33.358359 174.628751 103.993555 2.017006425 0.06824 130 61 SH18165 18165 YLR448W_12_1028848_1029762_INTRON_16_399 intron 63.357743 288.608885 63.357743 226.251142 144.8044425 2.160781886 0.007354 130 62 SH18694 18694 YNL112W_14_413636_416278_INTRON_1274_2275 3' exon 29.504732 168.123786 29.504732 139.619054 84.561893 1.927174697 0.034418 130 63 SH4216 4216 telomerase RNA telomerase 116 131 35.466791 185.301361 110.384076 2.042906427 0.041557 130 64 SH9200 9200 snR7 U5 RNA 3' 33.424254 178.136311 105.7802825 2.024404723 0.037046 130 65 SH20457 20457 YGL178W spliced 31.352216 154.306157 92.8291865 1.967684545 0.081102 130 66 SH697 697 Gln3 tRNA 16 32 31.243194 139.992881 85.6180375 1.932565269 0.152732 130 67 SH4197 4197 telomerase RNA telomerase 21 38 29.165063 187.490351 108.327707 2.03473955 -0.245327 130 68 SH13944 13944 MT COB Cytbi3 29.074894 180.52753 29.074894 152.452636 90.763765 1.957912503 -0.065607 130 69 SH17063 17063 YGR214W_7_920570_921783_INTRON_91_545 intron 29.018916 173.525136 29.018916 145.50622 87.262568 1.940827989 -0.032735 130 70 SH5076 5076 snR11 5' 53.520051 185.63565 119.5778505 2.077650742 0.306097 130 71 SH19058 19058 YOR234C_15_779404_778554_INTRON_20_546 intron 31.020384 199.283503 31.020384 169.263119 100.1417515 2.000615183 -0.026126 130 72 SH13107 13107 MT COX1 COX1ai3 29.172529 206.002914 29.172529 177.830385 103.501457 2.014946463 -0.191105 130 73 SH517 517 Asp2 3' flank 33.290909 196.911906 115.1014075 2.061080634 -0.136839 130 74 SH9089 9089 snR14 / U4 RNA U4 61 82 25.568048 153.401898 89.484973 1.951750111 -0.340556 130 75 SH15610 15610 YBR119W_2_479296_480281_INTRON_9_97 3' exon 37.812281 196.963396 37.812281 160.151115 98.981698 1.9955549 0.364411 130 76 SH16064 16064 YDR005C_4_458099_456832_INTRON_7_86 5' exon 36.097921 224.374538 36.097921 189.276617 112.687269 2.051874854 0.009583 130 77 SH18991 18991 YOR122C_15_552886_552297_INTRON_14_222 5' exon 38.426704 234.207595 38.426704 196.780891 117.6037975 2.070421346 -0.030866 130 78 SH12094 12094 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7356 7383 30.476155 162.200491 96.338323 1.983799082 -0.018132 130 79 SH20863 20863 YLR093C spliced 30.65026 188.59393 109.622095 2.039898098 -0.163009 130 80 SH3336 3336 Thr3 tRNA 26 43 30.775344 200.825574 115.800459 2.063710281 -0.26417 130 81 SH21308 21308 YPL241C spliced 30.846006 193.079647 111.9628265 2.049073854 -0.195049 130 82 SH6376 6376 snR43 snR43 121 136 32.942163 168.292233 100.617198 2.002672219 0.092085 130 83 SH14868 14868 MT tRNA Ser2; tRNA Arg2 3' 28.751428 150.172851 28.751428 122.421423 75.5864255 1.878443808 0.085974 130 84 SH14724 14724 MT tRNA cys; tRNA his intergenic 32.824363 182.091866 32.824363 150.267503 91.545933 1.961639055 0.197814 130 85 SH1829 1829 Leu8 3' flank 32.707832 177.851489 105.2796605 2.022344476 0.01379 130 86 SH325 325 Arg5 5' flank 30.509395 170.6029 100.5561475 2.002408626 -0.065187 130 87 SH14006 14006 MT COB intronic 30.360256 196.006966 30.360256 166.64671 98.503483 1.993451587 -0.05051 130 88 SH19394 19394 YPR043W_16_654161_654842_INTRON_3_405 3' exon 158.223952 497.896368 158.223952 340.672416 249.448184 2.396980347 0.099981 130 89 SH18361 18361 YMR033W_13_337787_339276_INTRON_31_116 3' exon 34.085378 196.088421 34.085378 163.003043 98.5442105 1.993631114 0.188303 130 90 SH19752 19752 Negative Control 31.881089 182.964619 107.422854 2.031096686 -0.064708 130 91 SH4196 4196 telomerase RNA telomerase 16 32 33.710062 207.332218 120.52114 2.081063231 -0.237271 130 92 SH18217 18217 YML025C_13_225365_224406_INTRON_28_126 intron/exon 33.53631 246.105526 33.53631 213.569216 123.552763 2.091852462 -0.305477 130 93 SH19296 19296 YPL175W_16_218629_220087_INTRON_18_117 3' exon 39.342935 250.664721 39.342935 212.321786 125.8323605 2.099792344 -0.190207 130 94 SH8469 8469 snoRNA cluster 5 3' 33.260136 210.202514 33.260136 177.942378 105.601257 2.023669088 0.032987 130 95 SH20077 20077 YCR031C spliced 35.14688 193.895609 114.5212445 2.058886059 -0.061816 130 96 SH8021 8021 snoRNA cluster 2 snR55 141.294072 446.031135 141.294072 305.737063 223.5155675 2.349307776 0.179443 130 97 SH16987 16987 YGR118W_7_726968_727725_INTRON_66_385 intron 31.14811 190.135105 31.14811 159.986995 95.5675525 1.980310464 0.038259 130 98 SH17055 17055 YGR214W_7_920570_921783_INTRON_91_545 intron 29.196032 170.984481 29.196032 142.788449 85.9922405 1.934459264 -0.005227 130 99 SH2490 2490 Pro1 5' flank 174.659182 321.372889 248.0160355 2.394479761 0.31184 130 100 SH694 694 Gln3 tRNA 1 17 613.481381 992.339097 802.910239 2.904666996 -0.085392 130 101 SH3572 3572 Tyr2 3' flank 34.23156 199.518161 116.8748605 2.067721106 -0.142741 130 102 SH14121 14121 MT COB intronic 29.288242 199.250641 29.288242 170.962399 100.1253205 2.000543919 -0.143687 130 103 SH6324 6324 snR42 3' 31.259728 154.686766 92.973247 1.968357999 0.072975 130 104 SH21927 21927 copy of SH20402 35.210132 186.958391 111.0842615 2.045652532 0.017834 131 2 SH13922 13922 MT COB Cytbi3 28.607116 180.135479 28.607116 152.528363 90.5677395 1.956973528 -0.09967 131 3 SH684 684 Gln3 5' flank 30.619742 169.995198 100.30747 2.001333277 -0.054813 131 4 SH8524 8524 snR19 / U1 RNA U1 116 132 93.859196 279.729845 186.7945205 2.271364132 -0.062647 131 5 SH16043 16043 YDL191W_4_117665_118518_INTRON_4_494 intron 34.667011 197.231982 34.667011 163.564971 99.115991 1.996143728 0.216437 131 6 SH19048 19048 YOR234C_15_779404_778554_INTRON_20_546 intron 271.105064 735.408224 271.105064 465.30316 368.204112 2.566088634 0.16097 131 7 SH10717 10717 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 471 488 37.806635 154.234385 96.02051 1.982364008 0.427756 131 8 SH19805 19805 Negative Control 32.714039 178.061006 105.3875225 2.022789195 0.012031 131 9 SH19486 19486 YPT1 2137.097627 2132.002451 2134.550039 3.32930634 0.315036 131 10 SH4242 4242 telomerase RNA telomerase 246 262 32.902521 159.016126 95.9593235 1.982087178 0.147438 131 11 SH2387 2387 Phe4 5' flank - tRNA2 2 28.807305 152.531611 90.669458 1.95746102 -0.085215 131 12 SH1458 1458 Leu2 tRNA-intron/exon 61 76 90.722555 245.758812 168.2406835 2.225931024 0.156065 131 13 SH13377 13377 MT COX1 intronic 28.762525 189.553334 28.762525 161.790809 95.276667 1.978986556 -0.136184 131 14 SH20580 20580 YHR016C spliced 495.713181 745.92219 620.8176855 2.79296408 0.112466 131 15 SH6141 6141 snR39B snR39B 46 62 32.532281 190.85855 111.6954155 2.048035348 -0.111764 131 16 SH15121 15121 MT tRNA Phe 5' 28.169188 172.761754 28.169188 145.592566 86.880877 1.938924196 -0.095789 131 17 SH9071 9071 snR14 / U4 RNA 5' 39.999679 141.619192 90.8094355 1.958130976 0.630288 131 18 SH13402 13402 MT COX1 intronic 716.734925 1621.428771 716.734925 905.693846 811.2143855 2.909135644 0.259301 131 19 SH15966 15966 YDL130W_4_229906_230527_INTRON_115_415 intron 31.346314 207.270076 31.346314 176.923762 104.135038 2.01759688 -0.05156 131 20 SH3942 3942 RNase MRP RNaseMRP 126 150 29.164488 146.054418 87.609453 1.942550969 -0.025127 131 21 SH3393 3393 Thr4 tRNA 51 67 66.327725 225.056601 145.692163 2.163436191 0.055664 131 22 SH3928 3928 RNase MRP RNaseMRP 56 75 26.958724 124.16913 75.563927 1.87831452 -0.058181 131 23 SH15555 15555 YBR082C_2_407127_406586_INTRON_48_142 exon/intron 28.824224 196.014196 28.824224 168.189972 98.507098 1.993467525 -0.16316 131 24 SH4732 4732 snR4 3' 26.818703 126.405524 76.6121135 1.884297443 -0.083684 131 25 SH18577 18577 YNL044W_14_545264_545873_INTRON_25_103 intron 26.753294 195.949306 26.753294 170.196012 98.474653 1.993324459 -0.327496 131 26 SH5602 5602 snR34 5' 33.430087 153.733115 93.581601 1.971190471 0.211502 131 27 SH15264 15264 MT 9S rRNA 9S 30.452133 192.579598 30.452133 163.127465 96.789799 1.985829588 -0.024385 131 28 SH8797 8797 LSR1 / U2 RNA U2 626 643 29.415291 165.466171 97.440731 1.988740533 -0.107808 131 29 SH10204 10204 RUF6 RUF6 866 890 32.229505 170.785833 101.507669 2.006498855 0.036256 131 30 SH6945 6945 snR58 86-96 + 3' 86 32.198162 150.021728 91.109945 1.959565784 0.159166 131 31 SH5953 5953 snR36 snR36 221 237 47.551634 217.581194 132.566414 2.122433509 -0.124521 131 32 SH842 842 Glu2 5' flank 30.343032 176.701733 103.5223825 2.015034258 -0.111095 131 33 SH11865 11865 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6211 6226 32.354654 162.052274 97.203464 1.987681742 0.096832 131 34 SH997 997 Gly2 5' flank 30.557894 167.639589 99.0987415 1.996068139 -0.044415 131 35 SH4849 4849 snR8 snR8 26 42 52.108361 184.661663 118.385012 2.073296723 0.300946 131 36 SH4181 4181 telomerase RNA 5' 30.891293 166.207715 98.549504 1.993654443 -0.015414 131 37 SH6486 6486 snR46 5' 29.121425 139.912666 84.5170455 1.926944307 0.00524 131 38 SH14260 14260 MT VAR1 includes 5’ processing site 5' 27.332625 154.162882 27.332625 127.830257 77.581441 1.889757842 -0.053935 131 39 SH2663 2663 Pro4 5' flank 27.499516 168.858831 98.1791735 1.992019372 -0.264013 131 40 SH3055 3055 Ser3 5' flank 27.651721 145.849147 86.750434 1.938271656 -0.13621 131 41 SH8030 8030 snoRNA cluster 2 snR55 35.811334 224.346763 35.811334 189.535429 112.6733815 2.051821328 0.000968 131 42 SH18201 18201 YML024W_13_225889_226697_INTRON_4_401 intron 80.529067 327.43566 80.529067 247.906593 164.21783 2.215420309 0.028628 131 43 SH21866 21866 copy of SH19501 31.976043 154.635577 93.30581 1.969908687 0.120262 131 44 SH11219 11219 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2981 3004 27.965376 139.874516 83.919946 1.923865196 -0.079859 131 45 SH3304 3304 Thr2 3' flank 27.95533 164.509745 96.2325375 1.983321938 -0.208759 131 46 SH9330 9330 RUF1 RUF1 226 242 357.566724 746.64998 552.108352 2.742024317 -0.294818 131 47 SH12042 12042 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7096 7112 4400.992415 6458.82474 5429.908578 3.734792518 -0.490453 131 48 SH12080 12080 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7286 7304 29.760371 120.199376 74.9798735 1.874944703 0.172089 131 49 SH1139 1139 His1 5' flank 32.645808 185.346551 108.9961795 2.037411275 -0.058139 131 50 SH11799 11799 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5881 5896 21188.11538 18863.97872 20026.04705 4.301595232 -0.161063 131 51 SH15878 15878 YDL082W_4_308423_309387_INTRON_5_369 intron 31.38773 191.336266 31.38773 160.948536 96.168133 1.983031185 0.047057 131 52 SH943 943 Gly1 5' flank 33.243865 197.804366 115.5241155 2.062672652 -0.146163 131 53 SH3321 3321 Thr3 5' flank 31.171581 175.02943 103.1005055 2.013260795 -0.051073 131 54 SH21435 21435 telomeric; WTP_217 882.416521 700.765883 791.591202 2.898500959 0.938141 131 55 SH19995 19995 YBR048W spliced 42.888725 196.480081 119.684403 2.078037558 0.038783 131 56 SH12063 12063 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7201 7219 30.127657 171.067749 100.597703 2.002588064 -0.091489 131 57 SH3281 3281 Thr2 tRNA 6 22 64.77771 208.588749 136.6832295 2.135715232 0.19368 131 58 SH17726 17726 YKL156W_11_158616_159214_INTRON_4_353 intron 29.284797 201.092128 29.284797 172.807331 101.046064 2.004519401 -0.154813 131 59 SH4403 4403 telomerase RNA telomerase 1051 1068 28.386956 141.680438 85.033697 1.929591061 -0.058343 131 60 SH1250 1250 Ile2 5' flank 33.431353 218.027884 125.7296185 2.099437598 -0.352695 131 61 SH13486 13486 MT COX1 intronic 29.522002 202.103269 29.522002 173.581267 101.5516345 2.006686918 -0.144272 131 62 SH17740 17740 YKL156W_11_158616_159214_INTRON_4_353 intron 29.550723 159.631747 29.550723 131.081024 80.3158735 1.904801387 0.086874 131 63 SH15492 15492 YBL092W_2_45639_46364_INTRON_1_333 intron 35.516198 219.170654 35.516198 184.654456 110.085327 2.041729437 0.049126 131 64 SH16183 16183 YDR367W_4_1212837_1213603_INTRON_31_131 exon/intron 31.482136 191.399104 31.482136 160.916968 96.199552 1.98317305 0.05287 131 65 SH16694 16694 YGL031C_7_438393_437938_INTRON_1_456 5' exon 254.322171 723.728815 254.322171 470.406644 362.3644075 2.559145533 0.066502 131 66 SH16467 16467 YER093C-A_5_348396_347908_INTRON_125_199 3' exon 31.302363 200.256275 31.302363 169.953912 100.6281375 2.002719435 -0.013348 131 67 SH4154 4154 SRP RNA 661-675 + 3' 661 39.093863 155.801263 97.447563 1.988770983 0.450807 131 68 SH1968 1968 Lys2 tRNA 41 57 10973.66794 11663.9488 11318.80837 4.053800707 -0.24843 131 69 SH8081 8081 snoRNA cluster 2 3' 31.075179 181.078322 31.075179 151.003143 91.039161 1.959228247 0.080211 131 70 SH21288 21288 YPL143W spliced 57.663305 227.918583 142.790944 2.154700665 -0.084391 131 71 SH11082 11082 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2296 2313 13144.5645 8387.746993 10766.15575 4.032060658 0.509871 131 72 SH9960 9960 RUF5-1 RUF5-1 606 623 31.258003 160.17767 95.7178365 1.980992874 0.044192 131 73 SH18127 18127 YLR388W_12_898158_898821_INTRON_1_488 intron 29.445938 201.273769 29.445938 172.827831 101.1368845 2.004909571 -0.144675 131 74 SH19305 19305 YPL198W_16_173151_174701_INTRON_12_420 intron 29.645081 186.195104 29.645081 157.550023 93.597552 1.97126449 -0.051945 131 75 SH18314 18314 YML073C_13_124172_123227_INTRON_16_430 3' exon 33.893038 201.91331 33.893038 169.020272 101.456655 2.00628054 0.140895 131 76 SH9280 9280 RUF1 5' 34.152079 165.681222 99.9166505 1.999637867 0.1754 131 77 SH3772 3772 Val4 3' flank 28.271251 131.929901 80.100576 1.903635639 -0.010655 131 78 SH15409 15409 YBL059C-A_2_110500_110086_INTRON_35_119 intron 30.502023 152.945337 30.502023 123.443314 76.9726685 1.886336543 0.200644 131 79 SH4385 4385 telomerase RNA telomerase 961 977 36.852767 198.035546 117.4441565 2.069831413 -0.074297 131 80 SH10143 10143 RUF6 RUF6 561 578 174.423166 316.419193 245.4211795 2.389912039 0.338492 131 81 SH5320 5320 snR30 snR30 451 468 32.876788 186.98112 109.928954 2.041112096 -0.06451 131 82 SH18508 18508 YMR194W_13_651144_651909_INTRON_17_479 3' exon 28.721483 185.302933 28.721483 157.58145 93.1514665 1.969189696 -0.117792 131 83 SH6943 6943 snR58 snR58 76 93 30.742689 152.547669 91.645179 1.962109624 0.049643 131 84 SH2493 2493 Pro1 5' flank 32.71554 168.719942 100.717741 2.003105976 0.076601 131 85 SH8476 8476 snoRNA cluster 5 3' 30.525626 161.216901 30.525626 131.691275 81.1084505 1.909066105 0.151614 131 86 SH11726 11726 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5516 5529 34.477275 165.511537 99.994406 1.999975705 0.194157 131 87 SH7448 7448 snR69 3' 30.221072 150.634648 90.42786 1.956302253 0.024352 131 88 SH15361 15361 YBL026W_2_170585_171000_INTRON_55_182 3' exon 30.054443 219.085661 30.054443 190.031218 110.0428305 2.041561753 -0.202849 131 89 SH14560 14560 MT 21S rRNA 21S rRNA3 31.899756 213.747085 31.899756 182.847329 107.3735425 2.030897282 -0.062925 131 90 SH21858 21858 copy of SH17803 85.143564 218.10952 151.626542 2.180775231 0.33402 131 91 SH9509 9509 RUF3 5' 27.569169 109.715586 68.6423775 1.836592317 0.090974 131 92 SH12362 12362 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.434446 182.755807 27.434446 156.321361 91.8779035 1.963211077 -0.206861 131 93 SH10779 10779 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 781 801 29.292445 147.811324 88.5518845 1.947197808 -0.025226 131 94 SH2879 2879 Pro8 5' flank 29.196918 123.280631 76.2387745 1.882175907 0.1118 131 95 SH6979 6979 snR60 5' 35.028746 177.204986 106.116866 2.025784415 0.102059 131 96 SH10864 10864 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1206 1223 73.48539 230.491098 151.988244 2.181809997 0.094046 131 97 SH20624 20624 YHR101C spliced 31.060803 182.321374 106.6910885 2.028128146 -0.099198 131 98 SH15551 15551 YBR078W_2_393082_394818_INTRON_59_388 intron/exon 30.096328 168.853002 30.096328 139.756674 84.926501 1.929043231 0.075461 131 99 SH4195 4195 telomerase RNA telomerase 11 27 250.026071 459.99999 355.0130305 2.550244294 0.084814 131 100 SH4226 4226 telomerase RNA telomerase 166 182 29.158714 145.524162 87.341438 1.941220338 -0.02271 131 101 SH2775 2775 Pro6 5' flank 31.13682 180.197108 105.666964 2.02393923 -0.082721 131 102 SH13398 13398 MT COX1 intronic 29.15324 172.590723 29.15324 144.437483 86.7953615 1.938496516 -0.017264 131 103 SH948 948 Gly1 5' flank - tRNA7 7 33.069123 173.841365 103.455244 2.014752509 0.065434 131 104 SH5367 5367 snR31 5' 36.978439 175.62616 106.3022995 2.026542659 0.182048 132 2 SH4564 4564 U3b (snR17b) U3b 376 388 35.725064 180.874493 108.2997785 2.034627568 0.091052 132 3 SH4383 4383 telomerase RNA telomerase 951 968 42.912368 207.427144 125.169756 2.097499406 -0.084005 132 4 SH3203 3203 Ser5 3' flank 53.208886 205.492763 129.3508245 2.111769201 0.078395 132 5 SH18265 18265 YML056C_13_164176_162194_INTRON_461_868 intron 32.508164 183.448568 32.508164 151.940404 92.224284 1.964845292 0.168757 132 6 SH8529 8529 snR19 / U1 RNA U1 141 156 30.476145 180.040772 105.2584585 2.022257006 -0.121932 132 7 SH7101 7101 snR63 snR63 11 30 29.502657 135.109706 82.3061815 1.915432454 0.059854 132 8 SH519 519 Asp2 3' flank 30.61318 157.15668 93.88493 1.972595887 0.016768 132 9 SH17580 17580 YJL191W_10_73786_74610_INTRON_11_418 intron 41.073371 228.872662 41.073371 188.799291 114.936331 2.060457329 0.103955 132 10 SH15609 15609 YBR119W_2_479296_480281_INTRON_9_97 intron/exon 28.717454 176.718669 28.717454 149.001215 88.8593345 1.948703056 -0.073226 132 11 SH19372 19372 YPR043W_16_654161_654842_INTRON_3_405 5' exon 1267.799823 2930.923005 1267.799823 1664.123182 1465.961503 3.166122565 0.017677 132 12 SH18174 18174 YLR448W_12_1028848_1029762_INTRON_16_399 intron 28.75988 179.227257 28.75988 151.467377 90.1136285 1.954790477 -0.082962 132 13 SH18904 18904 YOL120C_15_94401_93394_INTRON_113_559 intron 111.841026 407.792745 111.841026 296.951719 204.3963725 2.310473184 -0.004179 132 14 SH308 308 Arg4 3' flank 30.587047 184.750834 107.6689405 2.032090439 -0.14138 132 15 SH12120 12120 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7486 7506 28.304123 171.179236 99.7416795 1.998876677 -0.21522 132 16 SH20394 20394 YFL039C spliced 38.1763 168.590457 103.3833785 2.014450721 0.28923 132 17 SH13931 13931 MT COB Cytbi3 29.760647 217.518404 29.760647 188.757757 109.259202 2.038458024 -0.214381 132 18 SH13701 13701 MT tRNAGlu (and 5' processing site for COB) 5' 29.47467 173.109841 29.47467 144.635171 87.0549205 1.939793323 0.004764 132 19 SH19981 19981 YBL091C-A spliced 38.101943 185.904583 112.003263 2.049230675 0.086959 132 20 SH498 498 Asp2 tRNA 51 65 30.989643 156.169005 93.579324 1.971179904 0.047241 132 21 SH10729 10729 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 531 547 30.835395 159.612181 95.223788 1.978745454 0.019219 132 22 SH14963 14963 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 28.78423 205.960736 28.78423 178.176506 103.480368 2.014857964 -0.21813 132 23 SH4175 4175 telomerase RNA 5' 32.572273 163.239629 97.905951 1.99080909 0.101946 132 24 SH3867 3867 RNaseP RNaseP 301 317 30.5578 171.779743 101.1687715 2.005046476 -0.069208 132 25 SH13991 13991 MT COB intronic 26.62737 145.73983 26.62737 120.11246 73.369915 1.865518016 -0.055899 132 26 SH18625 18625 YNL096C_14_444312_443395_INTRON_145_489 intron 26.544819 199.464233 26.544819 173.919414 100.2321165 2.001006901 -0.361263 132 27 SH12793 12793 MT COX1 COX1ai1 28.367301 185.466832 28.367301 158.099531 93.233416 1.969571597 -0.146202 132 28 SH20137 20137 YDL083C spliced 35.906355 182.056096 108.9812255 2.037351687 0.086128 132 29 SH21376 21376 Leu8_9 spliced 35.815182 158.541029 97.1781055 1.987568428 0.309044 132 30 SH5295 5295 snR30 snR30 326 338 394.042667 534.86692 464.4547935 2.666943449 0.377745 132 31 SH20587 20587 YHR021C spliced 35.751089 170.202909 102.976999 2.012740231 0.194542 132 32 SH8312 8312 snoRNA cluster4 intergenic 31.037283 174.460244 31.037283 144.422961 87.730122 1.943148733 0.113772 132 33 SH73 73 Ala2 1-13 1 13 764.283331 1047.638248 905.9607895 2.957109402 0.104943 132 34 SH21297 21297 YPL198W spliced 33.14168 186.361414 109.751547 2.040410651 -0.049295 132 35 SH11948 11948 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6626 6641 37.14479 168.952435 103.0486125 2.013042149 0.252798 132 36 SH7682 7682 snoRNA cluster1 intergenic 65.497098 307.588352 65.497098 243.091254 154.294176 2.188349533 -0.112317 132 37 SH15475 15475 YBL091C-A_2_46858_46559_INTRON_35_122 intron 32.71498 216.044221 32.71498 184.329241 108.5221105 2.035518231 -0.046316 132 38 SH6259 6259 snR42 snR42 76 94 30.96856 136.707182 83.837871 1.923440241 0.152823 132 39 SH12834 12834 MT COX1 COX1ai1 27.232867 218.253264 27.232867 192.020397 109.626632 2.039916072 -0.397724 132 40 SH6682 6682 snR49 5' 27.397032 157.963076 92.680054 1.966986278 -0.217877 132 41 SH19432 19432 YPR132W_16_794960_795762_INTRON_66_430 intron 27.543139 146.486928 27.543139 119.943789 73.743464 1.867723534 0.014619 132 42 SH12165 12165 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7711 7728 263.319982 514.482526 388.901254 2.589839344 -0.044141 132 43 SH20793 20793 YKL156W spliced 31.759575 165.636014 98.6977945 1.994307448 0.039905 132 44 SH14802 14802 "MT tRNAs (Lys, Arg1, Gly)" intergenic 29.811532 190.566508 29.811532 161.754976 95.783254 1.981289587 -0.061663 132 45 SH9508 9508 RUF3 5' 29.831725 166.096121 97.963923 1.991066168 -0.081712 132 46 SH8747 8747 LSR1 / U2 RNA U2 376 390 44.915446 161.582808 103.249127 2.013886388 0.508728 132 47 SH2719 2719 Pro5 5' flank 39.817938 197.954451 118.8861945 2.075131426 -0.022887 132 48 SH18310 18310 YML073C_13_124172_123227_INTRON_16_430 intron 31.708383 201.650572 31.708383 170.942189 101.325286 2.005717838 0.004853 132 49 SH19290 19290 YPL175W_16_218629_220087_INTRON_18_117 intron 29.62017 191.129244 29.62017 162.509074 96.064622 1.982563478 -0.078795 132 50 SH17863 17863 YLL050C_12_40413_39803_INTRON_15_193 intron 31.511098 155.877208 31.511098 125.36611 78.438604 1.894529856 0.25689 132 51 SH6773 6773 snR50 snR50 41 58 35.371798 183.750799 109.5612985 2.039657171 0.052524 132 52 SH7762 7762 snoRNA cluster1 snR76 40.211055 234.259855 40.211055 195.0488 117.6299275 2.070517829 0.016802 132 53 SH12646 12646 MT_15S MT_15S 29.251967 165.707781 29.251967 137.455814 83.3538905 1.920925875 0.028466 132 54 SH9598 9598 RUF3 RUF3 376 393 33.144188 164.348197 98.7461925 1.994520359 0.127608 132 55 SH13874 13874 MT COB intronic 31.164498 192.864078 31.164498 162.69958 96.932039 1.986467348 0.02272 132 56 SH1047 1047 Gly3 5' flank 31.193554 147.451148 89.322351 1.950960145 0.107384 132 57 SH13458 13458 MT COX1 intronic 29.282724 158.856049 29.282724 130.573325 79.9280245 1.902699079 0.07071 132 58 SH11391 11391 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3841 3859 10791.09796 5937.372261 8364.23511 3.922426232 0.80448 132 59 SH7934 7934 snoRNA cluster1 snR72/3' 31.42882 229.697218 31.42882 199.268398 115.348609 2.062012362 -0.225865 132 60 SH21775 21775 copy of SH14039 31.50773 208.030526 119.769128 2.078344888 -0.295476 132 61 SH12961 12961 MT COX1 COX1ai2 29.570182 198.912991 29.570182 170.342809 99.9564955 1.999811021 -0.122089 132 62 SH6109 6109 snR37 3' 31.583915 151.539748 91.5618315 1.961714471 0.111037 132 63 SH5856 5856 snR35 snR35 466 485 31.56874 188.198754 109.883747 2.04093346 -0.124098 132 64 SH9433 9433 RUF2 RUF2 6 22 39.490823 183.102721 111.296772 2.046482568 0.145363 132 65 SH3082 3082 Ser3 3' flank 29.460191 172.621162 101.0406765 2.004496245 -0.142555 132 66 SH19409 19409 YPR098C_16_729525_728944_INTRON_48_143 intron 29.378307 189.675889 29.378307 161.297582 95.3379445 1.979265784 -0.089749 132 67 SH16724 16724 YGL033W_7_435621_436347_INTRON_56_125 intron 29.29874 152.627837 29.29874 124.329097 76.8139185 1.88543992 0.111942 132 68 SH16983 16983 YGR118W_7_726968_727725_INTRON_66_385 5' exon 35.150661 204.041754 35.150661 169.891093 102.520877 2.010812313 0.177347 132 69 SH15839 15839 YDL075W_4_322225_322987_INTRON_58_478 intron 29.205905 201.932003 29.205905 173.726098 101.4660015 2.006320546 -0.165243 132 70 SH4877 4877 snR8 snR8 166 178 31.186278 172.769019 101.9776485 2.008504993 -0.036985 132 71 SH8167 8167 snoRNA cluster 3; snR70 41.131952 236.563346 41.131952 196.431394 118.781673 2.074749438 0.014249 132 72 SH6217 6217 snR40 3' 27.408103 169.414106 98.4111045 1.993044106 -0.273583 132 73 SH575 575 Gln1 5' flank 31.529317 175.537431 103.533374 2.015080367 -0.032686 132 74 SH6674 6674 snR48 3' 29.723621 164.734157 97.228889 1.987795323 -0.082576 132 75 SH10093 10093 RUF6 RUF6 311 330 29.925881 164.264084 97.0949825 1.987196788 -0.066187 132 76 SH16660 16660 YFR032C-A_6_223758_223245_INTRON_1_331 intron 32.159725 234.142982 32.159725 202.983257 117.571491 2.070302026 -0.229493 132 77 SH15076 15076 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.277207 213.378427 28.277207 186.10122 107.1892135 2.030151084 -0.295564 132 78 SH7329 7329 snR66 3' 30.4794 152.221125 91.3502625 1.9607098 0.033529 132 79 SH5488 5488 snR32 snR32 101 117 45.062451 212.82787 128.9451605 2.110405047 -0.110768 132 80 SH13572 13572 MT COX1 Exon 6 31.70782 183.51277 31.70782 152.80495 92.256385 1.964996433 0.112427 132 81 SH15674 15674 YBR191W_2_606228_607098_INTRON_12_399 intron 32.767154 236.325806 32.767154 204.558652 118.662903 2.074314969 -0.228011 132 82 SH17256 17256 YHR101C_8_315970_314876_INTRON_111_197 5' exon 34.808944 229.93564 34.808944 196.126696 115.46782 2.062460967 -0.093569 132 83 SH15778 15778 YDL012C_4_431513_431104_INTRON_46_131 intron 30.602355 181.028202 30.602355 151.425847 91.014101 1.959108684 0.046127 132 84 SH2957 2957 Ser1 tRNA 16 32 198.418902 391.630331 295.0246165 2.469858255 0.099154 132 85 SH3990 3990 RNase MRP 3' 28.315152 156.170434 92.242793 1.964932444 -0.140075 132 86 SH14822 14822 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly 30.206077 190.161401 30.206077 160.955324 95.5807005 1.980370209 -0.030363 132 87 SH3004 3004 Ser2 5' flank - tRNA2 2 28.017265 165.981388 96.9993265 1.986768719 -0.211381 132 88 SH12914 12914 MT COX1 COX1ai2 35.915045 211.329537 35.915045 176.414492 106.1647685 2.025980417 0.139537 132 89 SH17968 17968 YLR185W_12_522665_523290_INTRON_8_366 intron 29.702342 228.108287 29.702342 199.405945 114.5541435 2.059010803 -0.294712 132 90 SH13542 13542 MT COX1 intronic 35.517198 229.136233 35.517198 194.619035 115.0681165 2.060955004 -0.062512 132 91 SH20466 20466 YGL183C spliced 98.103312 265.287394 181.695353 2.25934382 0.081948 132 92 SH14527 14527 MT 21S rRNA 21S rRNA3 31.230863 197.109136 31.230863 166.878273 99.054568 1.995874508 0.000932 132 93 SH6665 6665 snR48 3' 38.986962 184.631849 111.8094055 2.048478338 0.118166 132 94 SH9585 9585 RUF3 RUF3 311 332 27.113867 131.28113 79.1974985 1.898711464 -0.092538 132 95 SH21315 21315 YPL249C-A spliced 44.706405 188.924322 116.8153635 2.067499965 0.153309 132 96 SH837 837 Glu2 5' flank 32.914603 209.002162 120.9583825 2.082635971 -0.271638 132 97 SH3655 3655 Val2 tRNA 16 31 64.368118 204.154952 134.261535 2.127951608 0.233232 132 98 SH21464 21464 copy of SH1000 34.895345 206.176237 120.535791 2.081116022 -0.200646 132 99 SH8355 8355 snoRNA cluster4 3' 32.954745 219.108451 32.954745 187.153706 110.0542255 2.041606722 -0.063229 132 100 SH7127 7127 snR63 snR63 141 153 32.963776 174.854361 103.9090685 2.016653452 0.051807 132 101 SH15257 15257 MT 9S rRNA 5' 29.028532 183.703263 29.028532 155.674731 92.3516315 1.965444572 -0.085862 132 102 SH5349 5349 snR30 596-601+3' 596 32.919987 159.145008 96.0324975 1.982418224 0.147607 132 103 SH21231 21231 YOR234C spliced 30.8982 162.026811 96.4625055 1.984358538 0.010888 132 104 SH1419 1419 Leu1 3' flank 36.717649 163.635329 100.176489 2.000765806 0.292902 133 2 SH12545 12545 MT_ORF6 + ORF7 (hypothetical) 3' 28.29672 162.947166 28.29672 135.650446 81.973583 1.913673918 -0.031155 133 3 SH2866 2866 Pro7 3' flank 28.282067 149.855141 89.068604 1.949724646 -0.109855 133 4 SH20760 20760 YJR094W-A spliced 117.458965 303.379994 210.4194795 2.323085942 0.004734 133 5 SH2995 2995 Ser2 5' flank 35.488879 173.564 104.5264395 2.019226157 0.152725 133 6 SH2656 2656 Pro4 5' flank 30.408527 158.842203 94.625365 1.976007568 -0.005794 133 7 SH5506 5506 snR32 3' 29.457969 135.368401 82.413185 1.915996699 0.055171 133 8 SH3178 3178 Ser5 tRNA 11 25 2937.819799 3651.745157 3294.782478 3.517826748 -0.111471 133 9 SH20410 20410 YFR032C-A spliced 47.268105 200.83275 124.0504275 2.093598265 0.050119 133 10 SH14820 14820 "MT tRNAs (Lys, Arg1, Gly)" intergenic 28.691253 189.300055 28.691253 161.608802 95.1500275 1.978408918 -0.140421 133 11 SH1680 1680 Leu6 5' flank 30.80307 142.868887 86.8359785 1.938699702 0.106816 133 12 SH3814 3814 RNaseP RNaseP 36 52 30.776087 180.738951 105.757519 2.024311254 -0.107556 133 13 SH16634 16634 YFR024C-A_6_203420_201947_INTRON_48_165 5' exon 28.602127 206.638365 28.602127 179.036238 103.8191825 2.016277605 -0.234884 133 14 SH17418 17418 YIL111W_9_155219_155762_INTRON_2_89 5' exon 32.532471 219.826216 32.532471 188.293745 110.413108 2.043020635 -0.088927 133 15 SH13376 13376 MT COX1 intronic 30.220214 199.633117 30.220214 170.412903 100.3165585 2.001372625 -0.081858 133 16 SH17494 17494 YJL041W_10_365480_368069_INTRON_2_119 intron 40.01885 219.536793 40.01885 180.517943 110.2683965 2.042451059 0.185724 133 17 SH13629 13629 MT ATP6 ATP6 29.615222 178.576668 29.615222 149.961446 89.788334 1.953219913 -0.014047 133 18 SH18763 18763 YNL162W_14_331319_332151_INTRON_5_516 3' exon 140.983509 489.604033 140.983509 349.620524 245.3020165 2.389701118 -0.069683 133 19 SH12057 12057 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7171 7188 33.011953 173.60462 103.3082865 2.014135158 0.064465 133 20 SH2014 2014 Lys3 tRNA 16 30 40.605189 177.768073 109.186631 2.038169466 0.229446 133 21 SH10368 10368 RUF7 RUF7 451 467 32.642173 175.04294 103.8425565 2.016375371 0.035024 133 22 SH6450 6450 snR45 snR45 96 108 30.59616 162.677045 96.6366025 1.985141653 -0.012353 133 23 SH16213 16213 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 30.511645 185.472995 30.511645 155.96135 93.2364975 1.969585951 0.016059 133 24 SH13986 13986 MT COB intronic 27568.24608 52703.48302 27568.24608 25136.23694 26352.24151 4.420817562 -0.275907 133 25 SH5314 5314 snR30 snR30 421 438 33.218065 138.303579 85.760822 1.933288935 0.289767 133 26 SH11089 11089 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2331 2346 104.066272 294.204712 199.135492 2.299148671 -0.058314 133 27 SH17516 17516 YJL136C_10_156971_156248_INTRON_25_484 intron 28.232666 164.429709 28.232666 137.197043 82.7148545 1.91758351 -0.044762 133 28 SH18777 18777 YNL265C_14_145280_144279_INTRON_28_132 intron 26.24145 200.127792 26.24145 174.886342 100.563896 2.00244209 -0.389609 133 29 SH8991 8991 snR17a / U3a U3a 241 257 31.83664 153.85235 92.844495 1.967756158 0.115308 133 30 SH4981 4981 snR10 5' 35.555286 147.730494 91.64289 1.962098776 0.367183 133 31 SH16927 16927 YGR001C_7_498029_497128_INTRON_36_97 intron 33.643337 198.302356 33.643337 165.659019 99.651178 1.998482437 0.14748 133 32 SH3992 3992 RNase MRP 3' 33.665855 154.523228 94.0945415 1.97356443 0.219432 133 33 SH16862 16862 YGL187C_7_150529_149708_INTRON_1_342 intron 40.363111 254.657351 40.363111 215.29424 127.8286755 2.106628289 -0.206614 133 34 SH9434 9434 RUF2 RUF2 11 29 35.735532 169.202942 102.469237 2.010593502 0.203964 133 35 SH15213 15213 MT COX3 cox3 32.068788 181.884678 32.068788 150.81589 91.442339 1.961147326 0.146534 133 36 SH4737 4737 snR4 3' 37.977614 186.419734 112.198674 2.049987724 0.07862 133 37 SH15314 15314 YAL003W_1_142172_143158_INTRON_81_446 intron 34.334856 184.519026 34.334856 151.18417 92.759513 1.96735846 0.278411 133 38 SH8964 8964 snR17a / U3a U3a 106 118 61.777816 220.949819 141.3638175 2.150338265 0.035844 133 39 SH643 643 Gln2 tRNA 1 18 262.5424 640.001804 451.272102 2.654438486 -0.414984 133 40 SH8659 8659 LSR1 / U2 RNA 5' 31.052573 143.442518 87.2475455 1.940753218 0.120312 133 41 SH19193 19193 YPL081W_16_404945_406039_INTRON_8_508 5' exon 29.26005 223.801017 29.26005 195.540967 112.4005085 2.050768276 -0.281964 133 42 SH4077 4077 SRP RNA SRP RNA 276 293 90.30422 225.856604 158.080412 2.198878059 0.317216 133 43 SH21576 21576 copy of SH5622 29.526377 159.189299 94.357838 1.974777981 -0.068657 133 44 SH15315 15315 YAL003W_1_142172_143158_INTRON_81_446 intron 25.625961 132.789311 25.625961 108.16335 66.8946555 1.825391422 -0.046773 133 45 SH9720 9720 RUF4 RUF4 376 391 29.664164 150.806685 90.2354245 1.955377066 -0.015173 133 46 SH6145 6145 snR39B snR39B 66 85 30.681854 155.534001 93.1079275 1.96898666 0.029827 133 47 SH16023 16023 YDL189W_4_122079_123590_INTRON_1_99 intron 35.669762 209.359619 35.669762 174.689857 105.1798095 2.02193238 0.147905 133 48 SH9431 9431 RUF2 5' - 13 -4 13 35.621347 195.139867 115.380607 2.062132819 -0.066261 133 49 SH6019 6019 snR37 snR37 11 30 31.558941 148.651701 90.105321 1.954750438 0.124983 133 50 SH15203 15203 MT COX3 cox3 35.455509 188.201077 35.455509 153.745568 94.6005385 1.975893609 0.321382 133 51 SH4566 4566 U3b (snR17b) U3b 386 402 39.329687 165.799976 102.5648315 2.010998471 0.353051 133 52 SH17464 17464 YIL148W_9_68708_69528_INTRON_9_442 intron 31.310945 166.028007 31.310945 135.717062 83.5140035 1.921759303 0.181645 133 53 SH6817 6817 snR52 5' - 10 -9 10 33.224055 189.477296 111.3506755 2.046692856 -0.074301 133 54 SH3177 3177 Ser5 tRNA 6 18 1395.110475 1818.758945 1606.93471 3.205998232 0.002546 133 55 SH8246 8246 snoRNA cluster4 5' 31.222023 150.715696 31.222023 120.493673 75.857848 1.880000518 0.26867 133 56 SH20497 20497 YGR001C spliced 53.039507 201.460109 127.249808 2.104657136 0.119764 133 57 SH14361 14361 MT ORF9 and ORF10 (hypothetical) ORF9 28.36069 172.868855 28.36069 145.508165 86.9344275 1.939191798 -0.081068 133 58 SH6616 6616 snR48 5' 33.391774 143.830732 88.611253 1.947488878 0.268847 133 59 SH1710 1710 Leu6 3' flank 33.479026 159.54201 96.510518 1.984574647 0.176554 133 60 SH4540 4540 U3b (snR17b) U3b 256 274 29.566544 173.197548 101.382046 2.005961052 -0.139205 133 61 SH2654 2654 Pro4 5' flank 29.607537 141.553405 85.580471 1.932374672 0.03102 133 62 SH9969 9969 RUF5-1 RUF5-1 651 667 44.61494 198.594827 121.6048835 2.084951016 0.038622 133 63 SH1973 1973 Lys2 66-73 + 3' flank 66 83 29.600908 114.44944 72.025174 1.857484316 0.201664 133 64 SH10297 10297 RUF7 RUF7 96 117 31.548032 217.783236 124.665634 2.09574675 -0.391272 133 65 SH1620 1620 Leu5 5' flank 29.493989 151.651401 90.572695 1.95699729 -0.031638 133 66 SH11095 11095 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2361 2374 73.269026 230.090677 151.6798515 2.180927895 0.095062 133 67 SH1905 1905 Lys1 5' flank 40.25661 209.074402 124.665506 2.095746304 -0.141207 133 68 SH17916 17916 YLR061W_12_263195_263949_INTRON_13_401 intron 31.28794 180.990686 31.28794 150.702746 90.995343 1.959019166 0.095984 133 69 SH3418 3418 Trp1 5' flank 35.220481 208.785444 122.0029625 2.086370376 -0.221473 133 70 SH529 529 Cys1 5' flank 29.313456 132.573519 80.9434875 1.908181912 0.061072 133 71 SH8787 8787 LSR1 / U2 RNA U2 576 593 27.396748 143.419164 85.407956 1.931498328 -0.142626 133 72 SH13888 13888 MT COB intronic 27.493094 169.931758 27.493094 143.438664 85.465879 1.931792764 -0.135339 133 73 SH15982 15982 YDL136W_4_217600_218367_INTRON_4_408 intron 29.617466 198.727199 29.617466 170.109733 99.8635995 1.999407216 -0.117711 133 74 SH1630 1630 Leu5 tRNA 16 28 32.793185 175.516038 104.1546115 2.017678503 0.039218 133 75 SH3843 3843 RNaseP RNaseP 181 196 33.998088 164.837518 99.417803 1.997464162 0.172139 133 76 SH1589 1589 Leu4 3' flank 28.103737 122.670608 75.3871725 1.877297455 0.037429 133 77 SH17299 17299 YHR141C_8_382752_381991_INTRON_5_445 3' exon 1118.845865 2525.934976 1118.845865 1408.089111 1263.467488 3.101564071 0.119941 133 78 SH1181 1181 His1 3' flank 30.416338 169.50106 99.958699 1.999820595 -0.064314 133 79 SH6931 6931 snR58 snR58 16 33 32.561135 127.62091 80.0910225 1.903583838 0.312035 133 80 SH18594 18594 YNL069C_14_494998_493953_INTRON_29_477 exon/intron 30.550065 176.018727 30.550065 146.468662 88.5093635 1.946989218 0.069541 133 81 SH2128 2128 Met1 tRNA 26 42 34.669157 186.495907 110.582532 2.04368653 0.003465 133 82 SH10582 10582 RUF8 RUF8 836 853 28.449036 163.18325 95.816143 1.981438685 -0.165869 133 83 SH1295 1295 Ile2 3' flank 30.418533 152.536904 91.4777185 1.961315325 0.027701 133 84 SH18730 18730 YNL147W_14_350937_351380_INTRON_19_138 intron 59.000264 289.5885 59.000264 231.588236 145.29425 2.162248427 -0.099008 133 85 SH21483 21483 copy of SH1656 30.156326 165.281646 97.718986 1.989978952 -0.05527 133 86 SH9648 9648 RUF4 RUF4 16 28 36.066337 179.187683 107.62701 2.031921275 0.118252 133 87 SH865 865 Glu2 3' flank 27.818643 127.731148 77.7748955 1.890839436 -0.017043 133 88 SH13504 13504 MT COX1 intronic 27.660563 166.585024 27.660563 139.924461 83.792512 1.92320521 -0.103218 133 89 SH4135 4135 SRP RNA SRP RNA 566 578 54.421639 163.734523 109.078081 2.037737489 0.599166 133 90 SH17695 17695 YKL006W_11_431544_432358_INTRON_130_527 intron 27.364505 166.037044 27.364505 139.672539 83.518522 1.9217828 -0.124478 133 91 SH17661 17661 YKL002W_11_437416_438182_INTRON_61_128 3' exon 35.112162 243.45418 35.112162 209.342018 122.22709 2.087167472 -0.229451 133 92 SH12728 12728 MT COX1 Exon1 33.992391 247.510815 33.992391 214.518424 124.2554075 2.094315298 -0.305579 133 93 SH13250 13250 MT COX1 COX1-ai4 30.954771 201.959719 30.954771 172.004948 101.4798595 2.006379857 -0.046411 133 94 SH11661 11661 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5191 5204 1233.776518 472.463901 853.1202095 2.93101023 2.001148 133 95 SH5739 5739 snR34 3' 205.566633 365.225534 285.3960835 2.455448009 0.262172 133 96 SH8813 8813 LSR1 / U2 RNA U2 706 718 4081.267621 4203.181809 4142.224715 3.617233656 0.093997 133 97 SH2529 2529 Pro1 3' flank 26.959233 139.755736 83.3574845 1.9209446 -0.156143 133 98 SH5776 5776 snR35 snR35 66 87 28.918443 162.628446 95.7734445 1.981245107 -0.129147 133 99 SH7183 7183 snR64 5' 231.781594 454.505224 343.143409 2.535475662 0.016762 133 100 SH18382 18382 YMR116C_13_500687_499455_INTRON_538_810 intron 30.864735 205.889784 30.864735 176.025049 103.444892 2.014709051 -0.075329 133 101 SH7143 7143 snR63 snR63 221 238 40.611645 195.091657 117.851651 2.071335671 0.022249 133 102 SH6110 6110 snR37 3' 42.507798 157.262865 99.8853315 1.999501715 0.528769 133 103 SH5440 5440 snR31 3' 34.591048 186.593086 110.592067 2.043723975 -0.000116 133 104 SH16211 16211 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 47.215325 219.402863 47.215325 173.187538 110.2014315 2.042187236 0.384829 134 2 SH7191 7191 snR64 snR64 21 37 150.140651 343.059486 246.6000685 2.391993193 0.031262 134 3 SH18754 18754 YNL162W_14_331319_332151_INTRON_5_516 intron 30.175424 171.57138 30.175424 142.395956 86.28569 1.935938776 0.066409 134 4 SH2884 2884 Pro8 5' flank 32.24449 173.282346 102.763418 2.011838541 0.02238 134 5 SH8448 8448 snoRNA cluster 5 snR128 46.646181 241.081174 46.646181 195.434993 121.040587 2.082931021 0.103001 134 6 SH9964 9964 RUF5-1 RUF5-1 626 642 34.424827 190.75808 112.5914535 2.051505426 -0.043138 134 7 SH981 981 Gly1 3' flank 51.014023 195.682843 123.348433 2.091133637 0.157031 134 8 SH3674 3674 Val2 3' flank 34.659651 170.311173 102.485412 2.010662051 0.156328 134 9 SH15735 15735 YBR230C_2_680008_679507_INTRON_12_108 3' exon 32.712222 221.933914 32.712222 190.221692 111.466957 2.047146145 -0.099516 134 10 SH2519 2519 Pro1 3' flank 43.172852 183.755959 113.4644055 2.054859642 0.195749 134 11 SH16786 16786 YGL103W_7_310965_311925_INTRON_50_560 intron 30.752587 196.953078 30.752587 167.200491 98.976539 1.995532263 -0.029878 134 12 SH6738 6738 snR49 3' 28.638114 148.613176 88.625645 1.947559409 -0.077021 134 13 SH1446 1446 Leu2 tRNA 1 13 453.982106 815.730025 634.8560655 2.802675273 -0.143764 134 14 SH4667 4667 snR3 3' 30.364135 148.543033 89.453584 1.951597745 0.04548 134 15 SH8143 8143 snoRNA cluster 3; intergenic 131.539421 481.071455 131.539421 350.532034 241.0357275 2.382081421 -0.147414 134 16 SH15974 15974 YDL136W_4_217600_218367_INTRON_4_408 intron 31.787892 225.405715 31.787892 194.617823 113.2028575 2.05385739 -0.172407 134 17 SH13303 13303 MT COX1 COX1-ai5a 31.457155 182.239198 31.457155 151.782043 91.619599 1.961988387 0.101397 134 18 SH17046 17046 YGR214W_7_920570_921783_INTRON_91_545 intron 33.124621 191.408238 33.124621 159.283617 96.204119 1.983193667 0.158306 134 19 SH4277 4277 telomerase RNA telomerase 421 435 60.295015 202.963912 131.6294635 2.119353111 0.196071 134 20 SH12225 12225 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.744656 179.131678 29.744656 150.387022 90.065839 1.954560099 -0.007292 134 21 SH1593 1593 Leu4 3' flank 190.321845 367.125531 278.723688 2.44517388 0.167028 134 22 SH21450 21450 copy of SH252 34.328079 173.276665 103.802372 2.016207278 0.115683 134 23 SH124 124 Arg1 5' flank - tRNA10 5' flank 10 36.161683 151.684111 93.922897 1.97277148 0.371964 134 24 SH3483 3483 Tyr1 5' flank 37.030297 203.193023 120.11166 2.079585169 -0.12689 134 25 SH251 251 Arg3 3' flank 34.057498 179.418 106.737749 2.02831804 0.047431 134 26 SH7905 7905 snoRNA cluster1 intergenic 32.041785 213.180882 32.041785 182.139097 107.090441 2.029750707 -0.051054 134 27 SH14826 14826 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly / 3' 31.928266 195.168046 31.928266 164.23978 98.084023 1.99159827 0.058409 134 28 SH19508 19508 ACT1 54.573443 217.061146 135.8172945 2.132955075 -0.022386 134 29 SH5734 5734 snR34 3' 29.83945 163.332904 96.586177 1.984914976 -0.067585 134 30 SH20478 20478 YGL189C spliced 31.658692 180.432777 106.0457345 2.025493204 -0.052977 134 31 SH10236 10236 RUF6 RUF6 1026 1042 27.872594 188.72945 108.301022 2.034632555 -0.336754 134 32 SH15534 15534 YBR078W_2_393082_394818_INTRON_59_388 exon/intron 37.280914 208.825236 37.280914 172.544322 104.912618 2.020827725 0.221681 134 33 SH95 95 Ala2 3' flank 33.563168 167.587277 100.5752225 2.002491002 0.131262 134 34 SH15330 15330 YAL003W_1_142172_143158_INTRON_81_446 intron/exon 33.643281 182.102885 33.643281 149.459604 91.5514425 1.961665192 0.252029 134 35 SH376 376 Asn1 5' flank 31.860025 157.510493 94.685259 1.976282371 0.096914 134 36 SH15919 15919 YDL083C_4_307788_306925_INTRON_25_456 intron 29.139903 171.438757 29.139903 143.298854 86.2193785 1.935604888 -0.01206 134 37 SH8706 8706 LSR1 / U2 RNA U2 171 187 35.965931 172.754209 104.36007 2.018534362 0.176613 134 38 SH5157 5157 snR13 5' 30.396916 165.506417 97.9516665 1.991011829 -0.041278 134 39 SH16947 16947 YGR027C_7_534779_534126_INTRON_1_312 intron 30.574305 194.267565 30.574305 164.69326 97.6337825 1.989600115 -0.025396 134 40 SH2819 2819 Pro7 5' flank 30.758807 138.921391 84.840099 1.928601167 0.125989 134 41 SH464 464 Asp1 3' flank 42.686114 196.188914 119.437514 2.077140755 0.03933 134 42 SH11345 11345 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3611 3624 252.974804 458.589142 355.781973 2.551183939 0.103802 134 43 SH8388 8388 snoRNA cluster 5 snR190 172.054459 576.069295 172.054459 405.014836 288.5346475 2.460197971 -0.11937 134 44 SH20316 20316 YER044C-A spliced 27.419395 164.530395 95.974895 1.982157646 -0.249033 134 45 SH20675 20675 YIL106W spliced 27.494938 139.957656 83.726297 1.922861884 -0.116052 134 46 SH6645 6645 snR48 snR48 51 68 39.48755 154.738384 97.112967 1.987277223 0.474362 134 47 SH17270 17270 YHR123W_8_354817_356083_INTRON_51_141 intron 29.542829 179.884856 29.542829 151.342027 90.442428 1.956372213 -0.02655 134 48 SH94 94 Ala2 3' flank 33.508333 204.747363 119.127848 2.076013296 -0.214195 134 49 SH20234 20234 YDR139C spliced 31.475538 221.206164 126.340851 2.101543798 -0.426864 134 50 SH13292 13292 MT COX1 COX1-ai5a 31.415627 242.662263 31.415627 212.246636 121.8311315 2.085758278 -0.338164 134 51 SH5164 5164 snR13 5' 31.349061 149.376776 90.3629185 1.955990249 0.107194 134 52 SH18633 18633 YNL096C_14_444312_443395_INTRON_145_489 intron 39.201507 276.504334 39.201507 238.302827 138.752167 2.142239775 -0.453684 134 53 SH18229 18229 YML026C_13_223828_222987_INTRON_48_448 intron 33.22145 209.971084 33.22145 177.749634 105.485542 2.023192939 0.033422 134 54 SH14253 14253 MT VAR1 includes 5’ processing site 5' and processing site for var1 29.263246 188.302778 29.263246 160.039532 94.651389 1.976126992 -0.09155 134 55 SH6308 6308 snR42 snR42 321 337 39.159561 203.033145 121.096353 2.083131064 -0.090783 134 56 SH8519 8519 snR19 / U1 RNA U1 91 109 31.30597 178.657084 104.981527 2.021112885 -0.063873 134 57 SH12156 12156 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7666 7684 89.19688 254.977499 172.0871895 2.235748542 0.068215 134 58 SH19307 19307 YPL198W_16_173151_174701_INTRON_12_420 intron 41.406412 226.487139 41.406412 186.080727 113.7435695 2.055926853 0.141947 134 59 SH1036 1036 Gly3 5' flank 29.545573 147.270832 88.4082025 1.946492561 -0.004267 134 60 SH6730 6730 snR49 3' 31.595399 170.205839 100.900619 2.003893831 0.002566 134 61 SH5722 5722 snR34 snR34 531 549 31.629029 169.825035 100.727032 2.003146037 0.00683 134 62 SH11279 11279 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3281 3301 29.636756 147.218096 88.427426 1.946586983 0.002418 134 63 SH13541 13541 MT COX1 intronic 29.615192 193.779787 29.615192 165.164595 97.3898935 1.988513891 -0.092274 134 64 SH6776 6776 snR50 snR50 56 74 33.56021 208.9996 121.279905 2.083788848 -0.257868 134 65 SH13548 13548 MT COX1 intronic 31.508722 218.947555 31.508722 188.438833 109.9737775 2.041289143 -0.128529 134 66 SH18022 18022 YLR306W_12_744151_744851_INTRON_4_137 intron 31.448779 220.523167 31.448779 190.074388 110.7615835 2.044389156 -0.145394 134 67 SH17244 17244 YHR079C-A_8_262554_262193_INTRON_114_199 3' exon 31.39702 209.609155 31.39702 179.212135 105.3045775 2.02244725 -0.061596 134 68 SH10559 10559 RUF8 RUF8 721 738 29.383359 137.47847 83.4309145 1.921327004 0.037776 134 69 SH15103 15103 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 31.357754 196.972508 31.357754 166.614754 98.986254 1.995574889 0.010117 134 70 SH16915 16915 YGL251C_7_31636_27921_INTRON_59_210 intron 48.27724 255.766067 48.27724 208.488827 128.3830335 2.108507633 -0.02029 134 71 SH11765 11765 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5711 5727 19597.41745 9885.586038 14741.50174 4.168541728 0.765366 134 72 SH4913 4913 snR9 5' 71.605661 162.34595 116.9758055 2.068096044 0.801391 134 73 SH1448 1448 Leu2 tRNA 11 23 77.961448 230.463199 154.2123235 2.188119081 0.145784 134 74 SH10320 10320 RUF7 RUF7 211 225 54.020888 237.546737 145.7838125 2.163709304 -0.221893 134 75 SH16244 16244 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 31.993853 222.379562 31.993853 191.385709 111.689781 2.048013439 -0.136411 134 76 SH9166 9166 snR7 U5 RNA U5 101 115 40.273951 194.428005 117.350978 2.069486713 0.025025 134 77 SH4509 4509 U3b (snR17b) U3b 101 117 38.392749 168.869237 103.630993 2.01548966 0.293215 134 78 SH4592 4592 U3b (snR17b) 3' 31.347099 166.47099 98.9090445 1.995236006 0.010359 134 79 SH12491 12491 MT_tRNA Pro 5' 30.380442 182.390435 30.380442 153.009993 91.6952175 1.962346685 0.022592 134 80 SH2561 2561 Pro2 tRNA-intron 41 58 28.348447 171.330768 99.8396075 1.999302865 -0.212689 134 81 SH12589 12589 MT_15S MT_15S 30.37084 206.471927 30.37084 177.101087 103.7359635 2.015929345 -0.111676 134 82 SH13007 13007 MT COX1 COX1ai2 28.264996 170.433986 28.264996 143.16899 85.716993 1.933066927 -0.075556 134 83 SH5695 5695 snR34 snR34 396 415 30.207222 160.542905 95.3750635 1.97943484 -0.028206 134 84 SH21779 21779 copy of SH14229 32.106155 193.404594 112.7553745 2.052137252 -0.14992 134 85 SH1055 1055 Gly3 tRNA 11 29 58.27558 213.597805 135.9366925 2.133336699 0.061624 134 86 SH18228 18228 YML026C_13_223828_222987_INTRON_48_448 intron 33.777106 215.892422 33.777106 183.115316 108.446211 2.035214383 0.003108 134 87 SH5014 5014 snR10 snR10 101 122 29.593214 142.543035 86.0681245 1.934842339 0.024572 134 88 SH19960 19960 YBL059C-A spliced 31.409379 164.631321 98.02035 1.991316249 0.02536 134 89 SH5733 5733 snR34 3' 29.268492 153.03945 91.153971 1.959775593 -0.054946 134 90 SH1773 1773 Leu7 3' flank 29.126923 176.032889 102.579906 2.011062297 -0.183707 134 91 SH12347 12347 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 50.56947 191.469254 50.56947 141.899784 96.234627 1.983331367 0.875515 134 92 SH21557 21557 copy of SH4783 28.911696 131.796385 80.3540405 1.90500772 0.036589 134 93 SH9665 9665 RUF4 RUF4 101 113 37.601209 192.988047 115.294628 2.061809072 -0.003843 134 94 SH18159 18159 YLR426W_12_987057_988108_INTRON_81_151 intron/exon 34.63302 224.245656 34.63302 190.612636 112.622828 2.051626428 -0.035045 134 95 SH9704 9704 RUF4 RUF4 296 311 36.560278 210.030446 123.295362 2.09094674 -0.209434 134 96 SH983 983 Gly2 5' flank 40.458208 174.235866 107.347037 2.030790062 0.270591 134 97 SH240 240 Arg3 56-68 56 68 58.049111 223.721751 140.885431 2.148866085 -0.039808 134 98 SH15964 15964 YDL130W_4_229906_230527_INTRON_115_415 intron 28.815288 196.771143 28.815288 168.955855 98.8855715 1.995132928 -0.167484 134 99 SH317 317 Arg5 5' flank 30.753038 186.240213 108.4966255 2.035416231 -0.13942 134 100 SH2205 2205 Phe1 5' flank 28.781146 136.053479 82.4173125 1.916018449 0.002283 134 101 SH554 554 Cys1 71-72 + 3' flank 71 3' flank 30.667437 137.759614 84.2135255 1.925381849 0.126268 134 102 SH5173 5173 snR13 snR13 21 38 107.179157 303.647971 205.413564 2.312629118 -0.088701 134 103 SH6495 6495 snR46 5' 32.409794 146.62944 89.519617 1.951918215 0.19129 134 104 SH10458 10458 RUF8 RUF8 216 232 34.21314 170.218855 102.2159975 2.009518871 0.14171 135 2 SH18509 18509 YMR194W_13_651144_651909_INTRON_17_479 3' exon 34.050242 230.181818 34.050242 197.131576 115.590909 2.062923679 -0.12029 135 3 SH414 414 Asn1 3' flank 34.07118 190.238816 112.154998 2.049818632 -0.050908 135 4 SH2233 2233 Phe1 tRNA-intron/exon 41 59 32.085572 162.092589 97.0890805 1.987170388 0.080967 135 5 SH13383 13383 MT COX1 Exon 5b 30.128133 173.432322 30.128133 144.304189 87.216161 1.940596966 0.052732 135 6 SH1180 1180 His1 3' flank 30.228542 156.895157 93.5618495 1.971098798 -0.008123 135 7 SH18644 18644 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.324792 166.649745 29.324792 138.324953 83.8248725 1.923372902 0.028791 135 8 SH18126 18126 YLR388W_12_898158_898821_INTRON_1_488 intron 32.528791 202.530694 32.528791 171.001903 101.765347 2.007599918 0.05225 135 9 SH18255 18255 YML034W_13_209525_212155_INTRON_1921_2046 3' exon 32.649511 222.656747 32.649511 191.007236 111.8283735 2.048552008 -0.108769 135 10 SH21451 21451 copy of SH294 28.59927 155.282513 91.9408915 1.963508711 -0.114736 135 11 SH2332 2332 Phe3 5' flank - tRNA5 5 28.615284 191.275453 109.9453685 2.041176939 -0.301209 135 12 SH9115 9115 snR14 / U4 RNA 3' 30.619514 147.089796 88.854655 1.948680185 0.070826 135 13 SH12758 12758 MT COX1 COX1ai1 356.857246 1035.826063 356.857246 679.968817 518.4130315 2.71467591 -0.142403 135 14 SH14208 14208 MT ATP9 5' 28.204492 189.54355 28.204492 162.339058 95.271775 1.978964257 -0.179584 135 15 SH15190 15190 MT COX3 cox3 29.953664 180.684931 29.953664 151.731267 90.8424655 1.958288913 0.000031 135 16 SH8876 8876 LSR1 / U2 RNA U2 1021 1037 81.873852 266.356468 174.11516 2.240836586 -0.096678 135 17 SH4033 4033 SRP RNA SRP RNA 56 75 29.328428 134.451743 81.8900855 1.913231325 0.051184 135 18 SH9968 9968 RUF5-1 RUF5-1 646 663 29.051585 174.958541 102.005063 2.008621728 -0.182329 135 19 SH13077 13077 MT COX1 COX1ai3 30.767936 174.01624 30.767936 144.248304 87.50812 1.942048354 0.096663 135 20 SH541 541 Cys1 tRNA 6 18 266.927489 577.600832 422.2641605 2.625584222 -0.222798 135 21 SH18867 18867 YNR053C_14_723108_721117_INTRON_811_1341 intron 71.048155 335.728115 71.048155 265.67996 168.3640575 2.226249384 -0.220797 135 22 SH7863 7863 snoRNA cluster1 intergenic/snR73 28.454913 177.234167 28.454913 149.779254 89.1170835 1.949960965 -0.096628 135 23 SH17462 17462 YIL148W_9_68708_69528_INTRON_9_442 intron 39.885041 202.908494 39.885041 164.023453 101.954247 2.008405321 0.388026 135 24 SH14856 14856 MT tRNA Ser2; tRNA Arg2 tRNA Ser 39.798814 230.70344 39.798814 191.904626 115.85172 2.063902486 0.047755 135 25 SH7590 7590 snR189 snR189 21 37 32.068773 168.627545 100.348159 2.001509409 0.039831 135 26 SH11348 11348 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3626 3643 31.024542 160.027279 95.5259105 1.980121186 0.029806 135 27 SH818 818 Glu1 3' flank 31.87014 149.865588 90.867864 1.958410319 0.138759 135 28 SH17794 17794 YKL186C_11_93537_92746_INTRON_71_233 intron 169.201233 638.549477 169.201233 470.348244 319.7747385 2.504844152 -0.402534 135 29 SH11727 11727 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5521 5539 61.904223 221.606906 141.7555645 2.151540116 0.031364 135 30 SH3413 3413 Thr4 3' flank 29.732917 170.744838 100.2388775 2.001036195 -0.114225 135 31 SH11368 11368 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3726 3742 3283.81668 4142.06469 3712.940685 3.569718011 -0.165535 135 32 SH1209 1209 Ile1 tRNA 6 18 27.820184 152.801428 90.310806 1.955739718 -0.159707 135 33 SH19073 19073 YOR293W_15_867094_867848_INTRON_53_489 intron 29.71656 202.009245 29.71656 173.292685 101.5046225 2.00648582 -0.130302 135 34 SH5298 5298 snR30 snR30 341 359 35.405027 187.334178 111.3696025 2.04676667 0.018337 135 35 SH12614 12614 MT_15S MT_15S 35.486853 203.510479 35.486853 169.023626 102.2552395 2.00968557 0.197388 135 36 SH20402 20402 YFR031C-A spliced 37.486974 181.151984 109.319479 2.038697553 0.131848 135 37 SH21389 21389 Phe1_5 spliced 170.062993 365.335638 267.6993155 2.427647261 0.051913 135 38 SH20533 20533 YGR148C spliced 37.794675 189.115399 113.455037 2.054823782 0.043936 135 39 SH7192 7192 snR64 snR64 26 43 1339.228788 1961.456161 1650.342475 3.217574077 -0.17003 135 40 SH3001 3001 Ser2 5' flank 30.488883 162.809247 96.649065 1.985197657 -0.0203 135 41 SH5362 5362 snR30 3' 28.730245 181.884282 105.3072635 2.022458327 -0.242565 135 42 SH12855 12855 MT COX1 COX1ai1 32.790519 201.636271 32.790519 169.845752 101.3181355 2.005687189 0.074124 135 43 SH14017 14017 MT COB Exon4 27.09255 141.94733 27.09255 115.85478 71.473665 1.854146052 0.00975 135 44 SH5450 5450 snR32 5' 29.181922 171.545248 100.363585 2.001576166 -0.153944 135 45 SH4192 4192 telomerase RNA 5' - 15 15 31.261053 169.410327 100.33569 2.001455442 -0.012562 135 46 SH19918 19918 YAL030W spliced 73.101827 236.691788 154.8968075 2.190042467 0.035638 135 47 SH13152 13152 MT COX1 intronic 35.346759 198.920663 35.346759 164.573904 99.9603315 1.999827688 0.237669 135 48 SH10379 10379 RUF7 3' 28.417068 176.40575 102.411409 2.010348341 -0.23198 135 49 SH7783 7783 snoRNA cluster1 intergenic 27.408026 142.634355 27.408026 116.226329 71.8171775 1.856228333 0.030812 135 50 SH21300 21300 YPL198W spliced 33.303185 203.917619 118.610402 2.074122778 -0.209696 135 51 SH19471 19471 ADH1 29.301771 128.221182 78.7614765 1.896313849 0.086609 135 52 SH8911 8911 LSR1 / U2 RNA 3' 35.181757 204.222331 119.702044 2.078101566 -0.174125 135 53 SH8581 8581 snR19 / U1 RNA U1 401 413 1295.336071 1228.717672 1262.026872 3.101068602 0.526355 135 54 SH13772 13772 MT COB intronic 29.251308 211.933441 29.251308 183.682133 106.4667205 2.027213877 -0.218958 135 55 SH14958 14958 MT tRNA Met 3' 29.288407 169.905953 29.288407 141.617546 85.4529765 1.931727195 0.007843 135 56 SH15337 15337 YAL030W_1_87288_87754_INTRON_103_215 intron 31.327712 183.51092 31.327712 153.183208 92.25546 1.964992079 0.085396 135 57 SH19606 19606 RNA14 1.1 29.426912 157.980295 93.7036035 1.971756293 -0.069484 135 58 SH10921 10921 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1491 1511 711.018566 1283.843026 997.430796 2.998882773 -0.314956 135 59 SH17618 17618 YJR021C_10_469271_468247_INTRON_317_396 3' exon 29.574232 229.846169 29.574232 201.271937 115.4230845 2.062292676 -0.315607 135 60 SH9452 9452 RUF2 RUF2 101 116 27.628443 147.784918 87.7066805 1.943032674 -0.148258 135 61 SH6077 6077 snR37 snR37 301 313 266.158814 403.12629 334.642552 2.524581164 0.38435 135 62 SH4997 4997 snR10 snR10 16 30 35.640004 175.406935 105.5234695 2.023349062 0.139993 135 63 SH11847 11847 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6121 6139 2567.38797 2596.857271 2582.122621 3.411976862 0.248558 135 64 SH20619 20619 YHR097C spliced 31.575442 195.926483 113.7509625 2.05595508 -0.191749 135 65 SH9780 9780 RUF4 RUF4 676 691 618.141353 586.245446 602.1933995 2.779735991 0.782308 135 66 SH9468 9468 RUF2 RUF2 181 200 31.48295 176.509374 103.996162 2.017017312 -0.041047 135 67 SH13140 13140 MT COX1 intronic 33.435999 201.694684 33.435999 169.258685 101.347342 2.005812363 0.114083 135 68 SH12513 12513 MT_ORF6 + ORF7 (hypothetical) 5'/ORF6 27.464605 194.740998 27.464605 168.276393 97.870499 1.990651803 -0.263851 135 69 SH1351 1351 Ile3 3' flank 27.471555 113.726426 70.5989905 1.848798491 0.053718 135 70 SH1337 1337 Ile3 tRNA-intron 66 82 35.456306 178.358223 106.9072645 2.029007217 0.105646 135 71 SH16778 16778 YGL103W_7_310965_311925_INTRON_50_560 intron 33.535529 218.343175 33.535529 185.807646 109.6715875 2.04009413 -0.030121 135 72 SH6407 6407 snR43 3' 31.634974 170.741854 101.188414 2.005130789 0.001711 135 73 SH16025 16025 YDL189W_4_122079_123590_INTRON_1_99 3' exon 243.212963 642.447944 243.212963 400.234981 321.723972 2.507483422 0.292496 135 74 SH18875 18875 YNR053C_14_723108_721117_INTRON_811_1341 intron 27.849753 158.777841 27.849753 131.928088 79.8889205 1.902486553 -0.041537 135 75 SH14289 14289 MT VAR1 includes 5’ processing site VAR1 27.958571 175.633812 27.958571 148.675241 88.316906 1.946043846 -0.127923 135 76 SH16955 16955 YGR029W_7_543547_544199_INTRON_87_169 intron 30.082628 220.628314 30.082628 191.545686 110.814157 2.044595247 -0.211608 135 77 SH10965 10965 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1711 1729 32.199555 136.896418 84.5479865 1.927103269 0.233424 135 78 SH5969 5969 snR36 snR36 301 317 32.258479 171.67555 101.9670145 2.008459704 0.032656 135 79 SH20577 20577 YHR012W spliced 30.24357 156.068231 93.1559005 1.969210368 -0.00281 135 80 SH11731 11731 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5541 5558 21321.04571 10103.28342 15712.16456 4.196236019 0.839859 135 81 SH9228 9228 snR6 / U6 RNA U6 11 25 40.369958 182.25644 111.313199 2.046546664 0.17103 135 82 SH9759 9759 RUF4 RUF4 571 585 714.218308 531.037964 622.628136 2.794228742 1.124635 135 83 SH11628 11628 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5026 5041 3121.524369 2137.631713 2629.578041 3.419886064 0.811158 135 84 SH11133 11133 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2551 2566 251.050466 305.334842 278.192654 2.444345658 0.802142 135 85 SH18132 18132 YLR406C_12_931752_931062_INTRON_58_406 5' exon 31.693586 204.033098 31.693586 173.339512 102.516549 2.010793978 -0.01017 135 86 SH16905 16905 YGL232W_7_62074_63001_INTRON_58_115 5' exon 31.513191 228.076341 31.513191 197.56315 114.5381705 2.058950242 -0.208151 135 87 SH19772 19772 Negative Control 29.351949 145.634647 87.493298 1.941974787 -0.00939 135 88 SH12501 12501 MT_tRNA Pro tRNA/3' 29.187561 188.904877 29.187561 160.717316 94.9524385 1.977506122 -0.100348 135 89 SH10656 10656 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 166 183 168.671388 397.945137 283.3082625 2.452259241 -0.109931 135 90 SH7524 7524 snR79 5' 28.908831 146.466193 87.687512 1.942937748 -0.045865 135 91 SH17930 17930 YLR093C_12_327416_326514_INTRON_17_157 5' exon 38.523627 224.214618 38.523627 186.690991 112.607309 2.05156658 0.085552 135 92 SH12703 12703 MT ORF 8 (hypothetical) ORF8 26.797109 161.235553 26.797109 135.438444 81.1177765 1.909116038 -0.142543 135 93 SH19240 19240 YPL090C_16_378390_377286_INTRON_7_400 intron 30.620171 175.194678 30.620171 145.574507 88.097339 1.944962791 0.079259 135 94 SH19727 19727 Negative Control 32.53446 153.339216 92.936838 1.968187892 0.163011 135 95 SH4980 4980 snR10 5' 28.673106 120.136214 74.40466 1.871600136 0.095981 135 96 SH12392 12392 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.337721 220.655445 39.337721 182.317724 110.8277225 2.044648409 0.151972 135 97 SH14400 14400 MT 21S rRNA 21S rRNA3 28.705152 199.481856 28.705152 171.776704 100.240928 2.001045079 -0.188845 135 98 SH7827 7827 snoRNA cluster1 intergenic 28.71023 196.464211 28.71023 168.753981 98.7321055 1.994458399 -0.174096 135 99 SH19242 19242 YPL090C_16_378390_377286_INTRON_7_400 intron 28.693761 173.80646 28.693761 146.112699 87.40323 1.941527482 -0.059709 135 100 SH17827 17827 YKR057W_11_551293_551878_INTRON_25_346 3' exon 32.518433 218.887116 32.518433 187.368683 109.943558 2.041169788 -0.081133 135 101 SH21407 21407 Ser3 spliced 1490.80071 1076.187609 1283.49416 3.108393897 0.919175 135 102 SH16412 16412 YER056C-A_5_270183_269421_INTRON_38_434 intron 40.051387 228.310308 40.051387 189.258921 114.655154 2.059393582 0.083277 135 103 SH8387 8387 snoRNA cluster 5 snR190 62.18802 297.66399 62.18802 236.47597 149.331995 2.174152867 -0.099338 135 104 SH13945 13945 MT COB Cytbi3 28.189317 181.086106 28.189317 153.896789 91.043053 1.959246813 -0.137512 136 2 SH18911 18911 YOL120C_15_94401_93394_INTRON_113_559 intron 29.771922 194.41646 29.771922 165.644538 97.70823 1.989931146 -0.083671 136 3 SH17367 17367 YIL052C_9_257061_256224_INTRON_38_509 intron 27.800453 186.449994 27.800453 159.649541 93.724997 1.971855435 -0.195995 136 4 SH3202 3202 Ser5 3' flank 29.890281 159.577139 94.73371 1.976504546 -0.045207 136 5 SH20719 20719 YJL136C spliced 36.069074 178.152016 107.110545 2.029832229 0.128124 136 6 SH14301 14301 MT VAR1 includes 5’ processing site VAR1 28.075358 185.253279 28.075358 158.177921 93.1266395 1.969073932 -0.168072 136 7 SH14553 14553 MT 21S rRNA 21S rRNA3 30.241795 164.962056 30.241795 135.720261 82.981028 1.918978811 0.108455 136 8 SH7041 7041 snR62 5' - 18 -4 18 28.332731 148.502663 88.417697 1.946539199 -0.09902 136 9 SH20356 20356 YER117W spliced 28.444558 165.058817 96.7516875 1.985658549 -0.175454 136 10 SH5101 5101 snR11 snR11 106 122 34.69838 182.169386 108.433883 2.03516501 0.044083 136 11 SH610 610 Gln1 3' flank 30.584716 163.344241 96.9644785 1.986612666 -0.016445 136 12 SH4703 4703 snR4 snR4 51 72 30.510395 170.330121 100.420258 2.001821333 -0.0635 136 13 SH4392 4392 telomerase RNA telomerase 996 1015 30.34777 156.320478 93.334124 1.970040456 0.003019 136 14 SH9669 9669 RUF4 RUF4 121 139 32.136036 162.37743 97.256733 1.987919677 0.082121 136 15 SH11877 11877 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6271 6284 22928.4762 12632.39706 17780.43663 4.249942422 0.578697 136 16 SH6010 6010 snR37 5' 29.495038 145.813243 87.6541405 1.942772436 -0.000103 136 17 SH14183 14183 MT COB Exon6 31.155151 184.992995 31.155151 154.837844 92.9964975 1.968466592 0.06523 136 18 SH5759 5759 snR35 5' 28.919102 131.298256 80.108679 1.90367957 0.040079 136 19 SH5226 5226 snR30 5' - 3 -19 3 30.637733 185.703804 108.1707685 2.034109915 -0.143512 136 20 SH17981 17981 YLR211C_12_564531_563792_INTRON_19_77 3' exon 39.139275 244.270634 39.139275 206.131359 122.635317 2.088615558 -0.125703 136 21 SH19807 19807 Negative Control 39.955371 200.36112 120.1582455 2.079753578 -0.048435 136 22 SH18393 18393 YMR125W_13_517538_520445_INTRON_26_347 5' exon 30.284972 185.747463 30.284972 156.462491 93.3737315 1.970224715 -0.002015 136 23 SH9417 9417 RUF2 5' 33.098205 176.329408 104.7138065 2.020003947 0.042507 136 24 SH18107 18107 YLR367W_12_855877_857316_INTRON_698_1180 intron 33.045471 186.314712 33.045471 154.269241 93.657356 1.971541893 0.186333 136 25 SH12092 12092 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7346 7364 45.378921 165.579755 105.479338 2.023167395 0.462774 136 26 SH9044 9044 snR17a / U3a 3' 31.95497 155.055878 93.505424 1.970836804 0.116695 136 27 SH1846 1846 Leu9 5' flank 29.97446 147.666422 88.820441 1.948512925 0.023469 136 28 SH13767 13767 MT COB intronic 33.666041 214.274822 33.666041 181.608781 107.637411 2.031963243 0.013103 136 29 SH20730 20730 YJL189W spliced 41.124676 202.52863 121.826653 2.085742313 -0.055712 136 30 SH5660 5660 snR34 snR34 221 236 76.966326 252.341616 164.653971 2.216572209 -0.046919 136 31 SH5463 5463 snR32 5' 25.964397 129.902459 77.933428 1.89172378 -0.17288 136 32 SH14376 14376 MT ORF9 and ORF10 (hypothetical) ORF10 27.822052 190.053292 27.822052 163.23124 95.526646 1.98012453 -0.212356 136 33 SH3341 3341 Thr3 tRNA 51 67 48.495636 209.339909 128.9177725 2.110312793 -0.02614 136 34 SH13739 13739 MT COB Exon1 25.968908 161.047744 25.968908 136.078836 81.023872 1.908612994 -0.211019 136 35 SH9411 9411 RUF1 3' 33.514193 154.081151 93.797672 1.97219206 0.213902 136 36 SH9210 9210 snR6 / U6 RNA 5' 35.460161 188.295979 111.87807 2.048744966 0.008285 136 37 SH20016 20016 YBR084C-A spliced 35.549538 159.651706 97.600622 1.989452585 0.288034 136 38 SH892 892 Glu3 5' flank 33.771209 158.233603 96.002406 1.982282117 0.201165 136 39 SH8686 8686 LSR1 / U2 RNA U2 71 87 32.959281 170.880905 101.920093 2.008259811 0.077547 136 40 SH6017 6017 snR37 snR37 1 18 75.391624 251.432272 163.411948 2.213283807 -0.058019 136 41 SH9165 9165 snR7 U5 RNA U5 96 112 38.111857 174.747793 106.429825 2.027063348 0.221933 136 42 SH11944 11944 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6606 6624 9087.903111 5055.904418 7071.903765 3.849536342 0.83795 136 43 SH383 383 Asn1 5' flank - tRNA12 5' flank 12 340.631621 502.024499 421.32806 2.624620384 0.306871 136 44 SH20862 20862 YLR093C spliced 28.969894 163.890382 96.430138 1.984212788 -0.13172 136 45 SH1052 1052 Gly3 5' flank - tRNA12 12 72.43726 243.141559 157.7894095 2.198077851 -0.026406 136 46 SH1291 1291 Ile2 3' flank 29.186696 154.849357 92.0180265 1.963872915 -0.070279 136 47 SH1302 1302 Ile2 3' flank 29.244338 151.371256 90.307797 1.955725248 -0.047781 136 48 SH11238 11238 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3076 3091 119.183031 302.35072 210.7668755 2.323802357 0.025886 136 49 SH9256 9256 snR6 / U6 RNA 3' 33.204528 186.979514 110.092021 2.041755844 -0.052613 136 50 SH2377 2377 Phe4 5' flank 27.266542 117.202634 72.234588 1.8587452 0.013215 136 51 SH3049 3049 Ser3 5' flank 37.081073 209.626306 123.3536895 2.091152144 -0.196544 136 52 SH21929 21929 copy of SH21369 48.892064 226.325855 137.6089595 2.138646711 -0.192014 136 53 SH21372 21372 Leu8_9 spliced 37.053385 165.355783 101.204584 2.005200184 0.286157 136 54 SH8788 8788 LSR1 / U2 RNA U2 581 598 44.986447 181.02433 113.0053885 2.053099153 0.254671 136 55 SH393 393 Asn1 46-61 46 61 33.213056 164.532401 98.8727285 1.995076519 0.13035 136 56 SH15469 15469 YBL087C_2_60732_59815_INTRON_43_546 intron/exon 27.371366 148.391503 27.371366 122.020137 74.6957515 1.873295901 -0.012471 136 57 SH3218 3218 Thr1 5' flank 27.454098 132.505511 79.9798045 1.902980338 -0.074584 136 58 SH4203 4203 telomerase RNA telomerase 51 67 32.504024 166.200518 99.352271 1.997177799 0.079762 136 59 SH20182 20182 YDL191W spliced 37.569738 212.169088 124.869413 2.09645607 -0.21624 136 60 SH6086 6086 snR37 snR37 346 363 29.633323 164.069012 96.8511675 1.98610486 -0.085613 136 61 SH6313 6313 snR42 346-351 + 3' 346 29.651033 141.052992 85.3520125 1.931213766 0.036872 136 62 SH10509 10509 RUF8 RUF8 471 492 29.644352 145.472667 87.5585095 1.94229836 0.012354 136 63 SH20838 20838 YLL050C spliced 31.615377 190.329186 110.9722815 2.045214515 -0.141325 136 64 SH3382 3382 Thr4 5' flank - tRNA12 12 41.565299 169.117008 105.3411535 2.02259807 0.354633 136 65 SH16463 16463 YER093C-A_5_348396_347908_INTRON_125_199 intron 37.522848 219.81098 37.522848 183.288132 110.40549 2.04299067 0.106993 136 66 SH14446 14446 MT 21S rRNA 21S rRNA3 33.501226 201.482344 33.501226 168.981118 101.241172 2.005357164 0.119394 136 67 SH6516 6516 snR46 snR46 71 88 29.504384 130.684654 80.094519 1.903602798 0.085928 136 68 SH15963 15963 YDL130W_4_229906_230527_INTRON_115_415 intron 93.559205 350.22835 93.559205 257.669145 175.614175 2.244559568 0.093147 136 69 SH8523 8523 snR19 / U1 RNA U1 111 128 108.40595 323.928318 216.167134 2.334789665 -0.199261 136 70 SH142 142 Arg1 3' flank 37.546755 199.887934 118.7173445 2.074514174 -0.081375 136 71 SH11290 11290 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3336 3353 29.628058 138.590496 84.109277 1.9248439 0.048965 136 72 SH10014 10014 RUF6 5' 29.70672 135.599984 82.653352 1.917260471 0.071549 136 73 SH14544 14544 MT 21S rRNA 21S rRNA3 825.405918 1768.858553 825.405918 944.452635 884.9292765 2.946908563 0.370141 136 74 SH20555 20555 YHL001W spliced 31.904752 172.469223 102.1869875 2.009395596 0.007358 136 75 SH9826 9826 RUF5-1 5' 29.97693 175.650059 102.8134945 2.012050121 -0.127722 136 76 SH9873 9873 RUF5-1 RUF5-1 171 187 30.048599 125.692771 77.870685 1.891373995 0.154876 136 77 SH6922 6922 snR58 5' 30.097782 141.133194 85.615488 1.932552336 0.067925 136 78 SH15006 15006 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 36.214849 207.197528 36.214849 171.982679 104.098764 2.017445573 0.192428 136 79 SH4108 4108 SRP RNA SRP RNA 431 443 114.556998 280.015126 197.286062 2.295096404 0.130704 136 80 SH18008 18008 YLR287C-A_12_713158_712537_INTRON_4_433 intron 52.441265 253.466342 52.441265 202.025077 127.233171 2.104600351 0.10581 136 81 SH9374 9374 RUF1 RUF1 446 462 34.053377 197.194628 115.6240025 2.063047999 -0.120922 136 82 SH11691 11691 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5341 5359 2154.072976 1101.50383 1627.788403 3.21159795 1.361675 136 83 SH19399 19399 YPR063C_16_678315_677807_INTRON_42_127 intron 34.806706 197.890358 34.806706 164.083652 99.445179 1.997583734 0.220738 136 84 SH16248 16248 YDR397C_4_1266887_1266355_INTRON_38_129 5' exon 29.635962 179.294061 29.635962 150.658099 90.1470305 1.954951425 -0.016348 136 85 SH18247 18247 YML034W_13_209525_212155_INTRON_1921_2046 exon/intron 206.580238 605.15918 206.580238 399.578942 303.07959 2.481556691 0.109324 136 86 SH17028 17028 YGR183C_7_859471_859058_INTRON_4_216 5' exon 29.296577 165.565814 29.296577 137.269237 83.282907 1.920555876 0.032734 136 87 SH11184 11184 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2806 2819 77.49485 228.694874 153.094862 2.184960616 0.155864 136 88 SH8786 8786 LSR1 / U2 RNA U2 571 590 32.865609 137.26979 85.0676995 1.929764688 0.273708 136 89 SH5497 5497 snR32 snR32 146 165 30.758723 168.448092 99.6034075 1.998274196 -0.037058 136 90 SH8784 8784 LSR1 / U2 RNA U2 561 580 26.766149 131.343097 79.054623 1.897927272 -0.119474 136 91 SH6671 6671 snR48 3' 30.539258 181.616167 106.0777125 2.025624146 -0.126916 136 92 SH428 428 Asp1 5' flank 32.405231 193.838868 113.1220495 2.053547265 -0.142598 136 93 SH772 772 Gln4 3' flank 36.227566 208.8239 122.525733 2.088227309 -0.201929 136 94 SH4388 4388 telomerase RNA telomerase 976 995 30.454703 148.543276 89.4989895 1.951818132 0.051659 136 95 SH7005 7005 snR60 3' 28.551566 177.549565 103.0505655 2.013050379 -0.22972 136 96 SH172 172 Arg2 5' flank 28.57787 162.918089 95.7479795 1.981129618 -0.155175 136 97 SH4237 4237 telomerase RNA telomerase 221 238 28.598457 159.262883 93.93067 1.97280742 -0.135298 136 98 SH15168 15168 MT tRNA Val 3' 28.600947 152.856159 28.600947 125.255212 76.9280795 1.88608489 0.056217 136 99 SH6801 6801 snR52 5' 30.503103 186.963759 108.733431 2.036363092 -0.158614 136 100 SH2954 2954 Ser1 tRNA 1 13 192.382567 406.938776 299.6606715 2.476629748 -0.003174 136 101 SH6152 6152 snR39B 3' 32.265697 171.12173 101.6937135 2.007294107 0.036357 136 102 SH16427 16427 YER074W_5_306319_307192_INTRON_4_469 intron 32.129493 213.594975 32.129493 182.465482 107.2974875 2.030589553 -0.050801 136 103 SH7859 7859 snoRNA cluster1 intergenic 30.055738 171.195017 30.055738 142.139279 86.0975085 1.934990584 0.059445 136 104 SH2689 2689 Pro4 3' flank 29.878904 157.993217 93.9360605 1.972832343 -0.037916 137 2 SH16031 16031 YDL191W_4_117665_118518_INTRON_4_494 intron 33.603445 221.458949 33.603445 188.855504 111.2294745 2.046219885 -0.055153 137 3 SH19887 19887 Positive Control 3 29.639085 142.083448 85.8612665 1.93379729 0.030351 137 4 SH3859 3859 RNaseP RNaseP 261 277 29.722571 136.974577 83.348574 1.920898174 0.064812 137 5 SH5487 5487 snR32 snR32 96 112 80.574014 268.251174 174.412594 2.241577841 -0.12539 137 6 SH16701 16701 YGL031C_7_438393_437938_INTRON_1_456 intron 30.975643 216.868759 30.975643 186.893116 108.9343795 2.037164964 -0.135071 137 7 SH21523 21523 copy of SH3384 30.111793 160.061213 95.086503 1.978118876 -0.032338 137 8 SH4630 4630 snR3 snR3 66 81 32.29825 155.173427 93.7358385 1.971905669 0.13764 137 9 SH10451 10451 RUF8 RUF8 181 199 30.381364 191.382578 110.881971 2.044860937 -0.198333 137 10 SH21935 21935 copy of SH19618 30.456777 157.220829 93.838803 1.972382459 0.005808 137 11 SH9869 9869 RUF5-1 RUF5-1 151 167 30.46114 154.377919 92.4195295 1.965763753 0.020887 137 12 SH19630 19630 RNA14 2.2 28.333572 134.804993 81.5692825 1.911526642 -0.023541 137 13 SH2436 2436 Phe5 5' flank 32.244597 201.793578 117.0190875 2.068256707 -0.216417 137 14 SH966 966 Gly1 3' flank 27.945253 128.438483 78.191868 1.893161589 -0.012281 137 15 SH20158 20158 YDL130W spliced 31.665136 185.301637 108.4833865 2.035363234 -0.094268 137 16 SH7489 7489 snR71 snR71 61 77 41.235779 188.649338 114.9425585 2.06048086 0.108139 137 17 SH4577 4577 U3b (snR17b) U3b 441 457 60.492513 228.125525 144.309019 2.159293474 -0.047458 137 18 SH10774 10774 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 756 776 29.762222 160.713506 95.237864 1.978809646 -0.059866 137 19 SH5308 5308 snR30 snR30 391 407 31.47951 186.62251 109.05101 2.037629692 -0.113297 137 20 SH2858 2858 Pro7 96-103 + 3' flank 96 30.363808 140.979646 85.671727 1.932837522 0.087306 137 21 SH7132 7132 snR63 snR63 166 182 30.268864 144.553005 87.4109345 1.941565763 0.061016 137 22 SH6538 6538 snR46 181-197 + 3' 181 32.124346 186.812233 109.4682895 2.039288332 -0.09072 137 23 SH13801 13801 MT COB intronic 28.281052 177.436675 28.281052 150.155623 89.2183375 1.950454126 -0.111491 137 24 SH16943 16943 YGR027C_7_534779_534126_INTRON_1_312 intron 30.161817 207.843581 30.161817 178.681764 104.4217905 2.018791136 -0.133614 137 25 SH6456 6456 snR45 snR45 126 145 28.227554 180.684267 104.4559105 2.018933019 -0.268837 137 26 SH21 21 Ala1 tRNA 1 13 696.399133 1976.284703 1336.341918 3.125917591 -1.032927 137 27 SH15266 15266 MT 9S rRNA 9S 30.02144 177.684863 30.02144 148.663423 89.3424315 1.951057768 0.021268 137 28 SH15803 15803 YDL061C_4_341182_340627_INTRON_1_408 intron 87.041137 319.735724 87.041137 233.694587 160.367862 2.205117339 0.216291 137 29 SH14624 14624 MT 21S rRNA Sce1 endonuc 29.887778 190.744063 29.887778 161.856285 95.8720315 1.98169193 -0.056869 137 30 SH21731 21731 copy of SH12131 33.599038 160.409956 97.004497 1.986791868 0.177731 137 31 SH19489 19489 YPT1 31.666885 166.226331 98.946608 1.995400911 0.030827 137 32 SH13657 13657 MT ATP6 ATP6 31.633853 192.94072 31.633853 162.306867 96.97036 1.986639008 0.05312 137 33 SH7098 7098 snR63 5' - 13 -4 13 56.1067 212.755652 134.431176 2.128499998 0.041245 137 34 SH21002 21002 YML085C spliced 35.362262 178.670673 107.0164675 2.029450611 0.099511 137 35 SH17027 17027 YGR148C_7_788173_787307_INTRON_1_392 3' exon 25.97907 163.915406 25.97907 138.936336 82.457703 1.916231233 -0.227437 137 36 SH8400 8400 snoRNA cluster 5 snR190 29.747284 160.77807 29.747284 132.030786 80.889035 1.907889654 0.09521 137 37 SH15220 15220 MT COX3 cox3 35.4301 209.603989 35.4301 175.173889 105.3019945 2.022436597 0.13516 137 38 SH13982 13982 MT COB intronic 33.616783 187.524182 33.616783 154.907399 94.262091 1.974337069 0.214182 137 39 SH17086 17086 YHL001W_8_104270_105084_INTRON_130_527 intron 41.298064 229.495506 41.298064 189.197442 115.247753 2.061632467 0.102415 137 40 SH934 934 Gly1 5' flank 33.856528 144.826228 89.341378 1.951052647 0.291945 137 41 SH21529 21529 copy of SH3749 30.205696 183.150487 106.6780915 2.028075237 -0.155994 137 42 SH20986 20986 YML067C spliced 34.209259 180.983956 107.5966075 2.031798578 0.038093 137 43 SH4423 4423 telomerase RNA telomerase 1151 1173 28.614613 132.59595 80.6052815 1.906363499 0.010122 137 44 SH15000 15000 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.737227 185.22343 29.737227 156.486203 93.111715 1.969004326 -0.040016 137 45 SH6328 6328 snR42 3' 44.512429 188.04386 116.2781445 2.065498093 0.161374 137 46 SH8197 8197 snoRNA cluster 3; intergenic 28.030117 157.472296 28.030117 130.442179 79.236148 1.898923355 -0.018874 137 47 SH1591 1591 Leu4 3' flank 42.811922 191.221364 117.016643 2.068247635 0.099705 137 48 SH6382 6382 snR43 snR43 151 170 29.108348 165.294974 97.201661 1.987673686 -0.128738 137 49 SH7805 7805 snoRNA cluster1 snR75/intergenic 29.110942 179.789942 29.110942 151.679 90.394971 1.95614427 -0.058914 137 50 SH1670 1670 Leu6 5' flank 29.095073 143.021231 86.058152 1.934792016 -0.013791 137 51 SH1587 1587 Leu4 106-114 + 3' flank 106 29.076254 139.36328 84.219767 1.925414036 0.005037 137 52 SH6999 6999 snR60 snR60 76 92 31.028974 162.231318 96.630146 1.985112636 0.017501 137 53 SH11641 11641 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5091 5104 3591.95259 1746.228489 2669.09054 3.426363306 1.313148 137 54 SH5888 5888 snR35 3' 93.383628 264.994351 179.1889895 2.25331132 0.037156 137 55 SH11257 11257 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3171 3186 46.978615 174.498486 110.7385505 2.044298835 0.364579 137 56 SH4557 4557 U3b (snR17b) U3b 341 358 29.3202 142.730046 86.025123 1.934625302 0.00403 137 57 SH3925 3925 RNase MRP RNaseMRP 41 62 27.443208 139.403201 83.4232045 1.921286868 -0.116925 137 58 SH15419 15419 YBL059W_2_110555_111205_INTRON_287_355 intron/exon 29.518 189.49446 29.518 160.97646 95.24723 1.978852354 -0.07829 137 59 SH12383 12383 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.583577 229.105226 31.583577 198.521649 115.052613 2.060896487 -0.213645 137 60 SH2369 2369 Phe3 3' flank 47.642381 215.538231 131.590306 2.119223897 -0.102476 137 61 SH8745 8745 LSR1 / U2 RNA U2 366 382 45.661614 151.885874 98.773744 1.994641516 0.655172 137 62 SH19400 19400 YPR063C_16_678315_677807_INTRON_42_127 intron 27.644383 173.187444 27.644383 146.543061 87.093722 1.939986851 -0.140467 137 63 SH12739 12739 MT COX1 COX1ai1 31.610881 188.009619 31.610881 157.398738 94.5048095 1.975453911 0.082078 137 64 SH19102 19102 YOR312C_15_901173_900242_INTRON_2_427 intron 29.584557 202.431456 29.584557 173.846899 101.715728 2.007388112 -0.141869 137 65 SH11131 11131 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2541 2558 406.448281 456.540699 431.49449 2.634975254 0.679786 137 66 SH2504 2504 Pro1 tRNA 11 28 53.50579 174.979446 114.242618 2.057828147 0.438936 137 67 SH15465 15465 YBL087C_2_60732_59815_INTRON_43_546 intron 29.537123 156.503466 29.537123 127.966343 78.751733 1.89626012 0.10471 137 68 SH8222 8222 snoRNA cluster 3; snR51 29.55158 212.853885 29.55158 184.302305 106.9269425 2.029087149 -0.203291 137 69 SH8206 8206 snoRNA cluster 3; intergenic/snR51 29.583371 144.239227 29.583371 115.655856 72.6196135 1.861053933 0.191755 137 70 SH5886 5886 snR35 3' 207.693991 435.87004 321.7820155 2.507561768 -0.037017 137 71 SH16465 16465 YER093C-A_5_348396_347908_INTRON_125_199 intron 33.698447 207.865129 33.698447 175.166682 104.4325645 2.018835943 0.075201 137 72 SH7147 7147 snR63 241-255 + 3' 241 29.765478 159.062825 94.4141515 1.975037094 -0.051275 137 73 SH12295 12295 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.841339 161.434751 29.841339 132.593412 81.2173755 1.909648951 0.098545 137 74 SH7499 7499 snR71 3' 33.948104 173.978187 103.9631455 2.016879411 0.095531 137 75 SH18211 18211 YML025C_13_225365_224406_INTRON_28_126 5' exon 34.017453 236.829113 34.017453 203.81166 118.9145565 2.07523502 -0.19355 137 76 SH20369 20369 YER133W spliced 33.053741 167.244898 100.1493195 2.000648003 0.104749 137 77 SH4338 4338 telomerase RNA telomerase 726 745 28.014769 105.054804 66.5347865 1.823048768 0.1601 137 78 SH18668 18668 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.009769 134.843473 28.009769 107.833704 67.9217365 1.832008781 0.137931 137 79 SH7100 7100 snR63 snR63 6 26 50.279618 155.248092 102.763855 2.011840388 0.67246 137 80 SH7924 7924 snoRNA cluster1 snR72 46.127136 250.724567 46.127136 205.597431 125.8622835 2.099895607 -0.018163 137 81 SH10124 10124 RUF6 RUF6 466 482 29.859645 152.337551 91.098598 1.959511693 -0.009724 137 82 SH8852 8852 LSR1 / U2 RNA U2 901 917 637.466774 944.141979 790.8043765 2.898069064 0.043823 137 83 SH16435 16435 YER074W_5_306319_307192_INTRON_4_469 intron 29.615463 194.067187 29.615463 165.451724 97.5335935 1.989154226 -0.093663 137 84 SH17651 17651 YJR145C_10_702761_701720_INTRON_15_270 intron 29.459076 187.698781 29.459076 159.239705 94.3493905 1.974739099 -0.073649 137 85 SH2380 2380 Phe4 5' flank 29.286546 156.561773 92.9241595 1.968128642 -0.0721 137 86 SH6875 6875 snR56 snR56 6 28 126.317935 365.526397 245.922166 2.390797675 -0.266819 137 87 SH19681 19681 SIR1 2.4 28.929019 150.66179 89.7954045 1.953254111 -0.066473 137 88 SH17453 17453 YIL148W_9_68708_69528_INTRON_9_442 intron 26.827652 155.506536 26.827652 129.678884 78.253268 1.893502484 -0.104186 137 89 SH2048 2048 Lys4 5' flank 28.62399 136.520676 82.572333 1.916834555 -0.01192 137 90 SH10890 10890 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1336 1353 12994.99914 8651.125554 10823.06235 4.03435016 0.445861 137 91 SH17725 17725 YKL156W_11_158616_159214_INTRON_4_353 intron 32.268641 238.626505 32.268641 207.357864 119.8132525 2.078504858 -0.268458 137 92 SH4051 4051 SRP RNA SRP RNA 146 158 51.417137 204.130619 127.773878 2.106442076 0.069462 137 93 SH9738 9738 RUF4 RUF4 466 483 29.337374 146.663492 88.000433 1.944484809 -0.015922 137 94 SH17808 17808 YKR057W_11_551293_551878_INTRON_25_346 5' exon 59.123797 284.623559 59.123797 226.499762 142.8117795 2.154764031 -0.051313 137 95 SH9404 9404 RUF1 3' 30.341722 173.881122 102.111422 2.009074324 -0.094827 137 96 SH4586 4586 U3b (snR17b) 3' 28.460383 161.806145 95.133264 1.978332398 -0.158176 137 97 SH1886 1886 Leu9 3' flank 30.403868 159.783613 95.0937405 1.978151931 -0.010899 137 98 SH17799 17799 YKL190W_11_82949_83552_INTRON_53_128 5' exon 43.881306 203.681948 43.881306 160.800642 102.340974 2.010049546 0.502817 137 99 SH13137 13137 MT COX1 cox1ai3/intronic 26.535079 193.610077 26.535079 168.074998 97.3050385 1.988135329 -0.334334 137 100 SH18344 18344 YML124C_13_23684_22049_INTRON_26_323 intron 28.383161 158.890011 28.383161 131.50685 79.9450055 1.902791337 0.000132 137 101 SH10591 10591 RUF8 RUF8 881 898 32.098445 165.064465 98.581455 1.993795224 0.063258 137 102 SH11490 11490 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4336 4353 30239.59854 33091.58132 31665.58993 4.500587583 -0.592536 137 103 SH3157 3157 Ser5 5' flank 31.760957 140.995592 86.3782745 1.936404524 0.181061 137 104 SH18004 18004 YLR287C-A_12_713158_712537_INTRON_4_433 intron 31.558012 217.252742 31.558012 186.69473 109.126371 2.037929713 -0.110966 138 2 SH20553 20553 YHL001W spliced 37.420844 204.039363 120.7301035 2.081815573 -0.129338 138 3 SH9422 9422 RUF2 5' 45.508432 159.710619 102.6095255 2.011187679 0.54339 138 4 SH11790 11790 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5836 5851 6326.602296 4156.503365 5241.552831 3.719459967 0.680474 138 5 SH16279 16279 YDR447C_4_1355542_1354818_INTRON_4_317 intron 29.676732 179.301681 29.676732 150.624949 90.1508405 1.95496978 -0.013317 138 6 SH14829 14829 "MT tRNAs (Lys, Arg1, Gly)" 3' 27.804107 197.017184 27.804107 170.213077 99.008592 1.995672884 -0.247624 138 7 SH14410 14410 MT 21S rRNA 21S rRNA3 128.021592 464.578034 128.021592 337.556442 232.789017 2.366962486 -0.105857 138 8 SH7170 7170 snR64 5' 60.695679 234.566973 147.631326 2.169178521 -0.102364 138 9 SH13752 13752 MT COB Exon1 28.204442 188.189837 28.204442 160.985395 94.5949185 1.975867807 -0.172804 138 10 SH9760 9760 RUF4 RUF4 576 592 32.358607 200.138502 116.2485545 2.065387561 -0.198292 138 11 SH18740 18740 YNL162W_14_331319_332151_INTRON_5_516 intron 28.275203 197.808684 28.275203 170.533481 99.404342 1.997405355 -0.21428 138 12 SH806 806 Glu1 tRNA 46 58 44.515341 199.154077 121.834709 2.08577103 0.030875 138 13 SH1678 1678 Leu6 5' flank 28.034023 144.225259 86.129641 1.935152637 -0.098566 138 14 SH16265 16265 YDR424C_4_1319830_1319376_INTRON_26_121 3' exon 29.811372 203.989006 29.811372 175.177634 102.494503 2.010700574 -0.135339 138 15 SH13213 13213 MT COX1 COX1-ai4 29.517601 202.053259 29.517601 173.535658 101.5266295 2.006579969 -0.144284 138 16 SH19155 19155 YPL075W_16_412249_415357_INTRON_9_759 intron 33.146553 192.603143 33.146553 160.45659 96.8015715 1.985882408 0.152089 138 17 SH2081 2081 Lys4 tRNA 71 83 71.998838 214.769544 143.384191 2.15650127 0.220157 138 18 SH16338 16338 YDR500C_4_1450856_1450201_INTRON_8_396 exon/intron 30.60283 197.296484 30.60283 167.693654 99.148242 1.996285018 -0.041996 138 19 SH2876 2876 Pro8 5' flank 32.321484 156.103531 94.2125075 1.974108563 0.132912 138 20 SH19793 19793 Negative Control 34.09081 180.68033 107.38557 2.030945927 0.036772 138 21 SH17375 17375 YIL052C_9_257061_256224_INTRON_38_509 intron 39.736449 219.521125 39.736449 180.784676 110.2605625 2.042420204 0.177498 138 22 SH6271 6271 snR42 snR42 136 152 28.257641 141.227293 84.742467 1.928101103 -0.065463 138 23 SH1625 1625 Leu5 5' flank - tRNA9 9 35.875235 178.373774 107.1245045 2.029888826 0.11957 138 24 SH2324 2324 Phe3 5' flank 32.067195 176.698426 104.3828105 2.018628986 -0.007761 138 25 SH21872 21872 copy of SH18602 30.159936 167.528908 98.844422 1.994952166 -0.068249 138 26 SH17333 17333 YIL018W_9_316766_317930_INTRON_5_404 intron 30.142447 193.957906 30.142447 164.815459 97.478953 1.988910856 -0.053938 138 27 SH6929 6929 snR58 snR58 6 25 43.440082 185.681092 114.560587 2.05903523 0.175635 138 28 SH8323 8323 snoRNA cluster4 intergenic 31.959604 189.029949 31.959604 158.070345 95.0149745 1.977792056 0.099143 138 29 SH16143 16143 YDR092W_4_629869_630598_INTRON_31_298 intron 33.798853 206.757269 33.798853 173.958416 103.8786345 2.016526232 0.090445 138 30 SH20713 20713 YJL041W spliced 31.845537 160.422906 96.1342215 1.982878014 0.077449 138 31 SH7161 7161 snR63 3' 29.9036 166.153645 98.0286225 1.9913529 -0.076998 138 32 SH5165 5165 snR13 5' 37.405485 170.662632 104.0340585 2.017175541 0.244181 138 33 SH5229 5229 snR30 5' - 13 -4 13 39.239624 188.378263 113.8089435 2.056176392 0.078986 138 34 SH11409 11409 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3931 3944 35.42198 179.218691 107.3203355 2.030682022 0.096365 138 35 SH12798 12798 MT COX1 COX1ai1 29.746267 207.678638 29.746267 178.932371 104.339319 2.018447998 -0.160973 138 36 SH6620 6620 snR48 5' 25.975532 127.482505 76.7290185 1.884959643 -0.156414 138 37 SH2038 2038 Lys3 3' flank 50.427822 225.829836 138.128829 2.14028433 -0.165928 138 38 SH19566 19566 AEP2/ATP13 0.6 31.629501 141.590709 86.610105 1.937568565 0.169041 138 39 SH3460 3460 Trp1 3' flank 40.176722 205.248202 122.712462 2.08888867 -0.10019 138 40 SH16569 16569 YER133W_5_432491_433954_INTRON_178_702 intron 26.128419 146.318955 26.128419 121.190536 73.6594775 1.867228634 -0.102145 138 41 SH16365 16365 YEL012W_5_131772_132551_INTRON_6_128 intron 31.92465 213.892139 31.92465 182.967489 107.4460695 2.031190533 -0.063099 138 42 SH8288 8288 snoRNA cluster4 intergenic 33.992387 209.497505 33.992387 176.505118 105.2487525 2.022216957 0.07276 138 43 SH2061 2061 Lys4 5' flank 35.135868 197.902428 116.519148 2.0663973 -0.106585 138 44 SH7691 7691 snoRNA cluster1 intergenic 40.148576 195.645786 40.148576 156.49721 98.322893 1.992654649 0.475177 138 45 SH1636 1636 Leu5 tRNA-intron 46 62 26.780663 154.219178 90.4999205 1.956648198 -0.247108 138 46 SH7852 7852 snoRNA cluster1 intergenic 30.763367 198.795191 30.763367 169.031824 99.8975955 1.999555035 -0.04029 138 47 SH9093 9093 snR14 / U4 RNA U4 81 93 36.68797 153.783711 95.2358405 1.978800419 0.385007 138 48 SH17411 17411 YIL106W_9_166412_167441_INTRON_21_105 intron 28.930943 166.327225 28.930943 138.396282 83.6636125 1.922536613 -0.000089 138 49 SH3774 3774 Val4 3' flank 28.938464 175.070504 102.004484 2.008619263 -0.190272 138 50 SH16920 16920 YGL251C_7_31636_27921_INTRON_59_210 intron 36.733077 209.928307 36.733077 174.19523 105.4641535 2.023104871 0.187878 138 51 SH707 707 Gln3 66-72 + 3' flank 66 3' flank 31.845307 154.754613 93.29996 1.969881458 0.111136 138 52 SH3083 3083 Ser3 3' flank 30.881193 158.790988 94.8360905 1.976973642 0.026477 138 53 SH1000 1000 Gly2 5' flank - tRNA 7 7 34.830956 191.513422 113.172189 2.053739716 -0.041281 138 54 SH14143 14143 MT COB intronic 32.960733 233.026053 32.960733 201.06532 117.0130265 2.068234212 -0.18633 138 55 SH18616 18616 YNL069C_14_494998_493953_INTRON_29_477 intron/exon 29.149543 148.232201 29.149543 120.082658 74.6161005 1.872832549 0.130243 138 56 SH8933 8933 snR17a / U3a 5' 29.270305 140.904981 85.087643 1.929866493 0.010472 138 57 SH13337 13337 MT COX1 COX1-ai5a 27.413344 155.167491 27.413344 128.754147 78.0837455 1.892560637 -0.053838 138 58 SH18125 18125 YLR388W_12_898158_898821_INTRON_1_488 intron 29.49857 184.728884 29.49857 156.230314 92.864442 1.967849454 -0.055413 138 59 SH17253 17253 YHR097C_8_298611_297387_INTRON_126_249 intron/exon 31.570797 234.017027 31.570797 203.44623 117.5085135 2.070069332 -0.255479 138 60 SH13926 13926 MT COB Cytbi3 63.69021 268.672581 63.69021 205.982371 134.8362905 2.129806796 0.206248 138 61 SH12212 12212 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.636608 204.986306 37.636608 168.349698 102.993153 2.012808354 0.274586 138 62 SH3332 3332 Thr3 tRNA 6 22 31.629019 171.33833 101.4836745 2.006396184 -0.002184 138 63 SH3972 3972 RNase MRP RNaseMRP 276 288 41.59761 170.57569 106.08665 2.025660735 0.336478 138 64 SH11872 11872 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6246 6263 18168.7333 13852.33365 16010.53348 4.204405803 0.130738 138 65 SH14913 14913 MT tRNA Tyr 5' / tRNA 67.584585 286.256823 67.584585 219.672238 143.6284115 2.157240357 0.121096 138 66 SH9188 9188 snR7 U5 RNA 211-215 + 3' 211 29.550965 134.676228 82.1135965 1.914415074 0.065804 138 67 SH17646 17646 YJR145C_10_702761_701720_INTRON_15_270 intron 29.558399 186.152651 29.558399 157.594252 93.5763255 1.971165988 -0.05825 138 68 SH5559 5559 snR33 snR33 81 97 140.212523 298.840694 219.5266085 2.341487168 0.213737 138 69 SH18985 18985 YOR096W_15_505793_506766_INTRON_145_545 intron 29.623489 205.16029 29.623489 176.536801 103.080145 2.013175021 -0.15501 138 70 SH3998 3998 RNase MRP 3' 29.677065 177.689335 103.6832 2.015708392 -0.158244 138 71 SH11203 11203 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2901 2918 76.106603 238.759452 157.4330275 2.197095847 0.053742 138 72 SH13248 13248 MT COX1 COX1-ai4 29.806868 202.565734 29.806868 173.758866 101.782867 2.00767468 -0.127359 138 73 SH17264 17264 YHR101C_8_315970_314876_INTRON_111_197 3' exon 155.525783 505.361114 155.525783 350.835331 253.180557 2.403430351 0.028286 138 74 SH8020 8020 snoRNA cluster 2 snR55 135.840673 489.758484 135.840673 354.917811 245.379242 2.389837821 -0.136351 138 75 SH3520 3520 Tyr1 3' flank 36.035546 205.77672 120.906133 2.082448331 -0.173674 138 76 SH20857 20857 YLR078C spliced 9765.117777 5064.934705 7415.026241 3.870112692 0.928122 138 77 SH13143 13143 MT COX1 intronic 98.089578 382.485467 98.089578 285.395889 191.7427335 2.282718914 -0.058098 138 78 SH16409 16409 YER056C-A_5_270183_269421_INTRON_38_434 intron 29.967802 215.678553 29.967802 186.710751 108.3392765 2.034785931 -0.190336 138 79 SH12955 12955 MT COX1 COX1ai2 29.92031 197.744745 29.92031 168.824435 99.3723725 1.997265659 -0.090988 138 80 SH17005 17005 YGR148C_7_788173_787307_INTRON_1_392 5' exon 128.513587 404.805401 128.513587 277.291814 202.9027005 2.307287827 0.264206 138 81 SH3779 3779 Val4 3' flank 27.751996 157.509043 92.6305195 1.9667541 -0.18868 138 82 SH16083 16083 YDR025W_4_491510_492319_INTRON_46_384 intron 29.639585 200.705892 29.639585 172.066307 100.852946 2.003688589 -0.127935 138 83 SH17983 17983 YLR275W_12_694378_694800_INTRON_6_95 5' exon 31.487768 228.969963 31.487768 198.482195 114.9849815 2.06064112 -0.216949 138 84 SH9625 9625 RUF4 5' 41.222469 156.587407 98.904938 1.995217975 0.505826 138 85 SH15691 15691 YBR191W_2_606228_607098_INTRON_12_399 3' exon 31.124665 196.622198 31.124665 166.497533 98.811099 1.99480573 -0.003115 138 86 SH14013 14013 MT COB intron/exon4 28.973238 187.837309 28.973238 159.864071 94.4186545 1.975057807 -0.111331 138 87 SH12856 12856 MT COX1 COX1ai1 28.790781 193.225578 28.790781 165.434797 97.112789 1.987276427 -0.152189 138 88 SH16941 16941 YGR027C_7_534779_534126_INTRON_1_312 intron 71.284621 296.446442 71.284621 226.161821 148.723221 2.172378783 0.106626 138 89 SH15252 15252 MT tRNA fMet 3' 28.479652 191.263582 28.479652 163.78393 96.131791 1.982867034 -0.166614 138 90 SH21466 21466 copy of SH1002 94.723385 249.120516 171.9219505 2.23533133 0.170156 138 91 SH3074 3074 Ser3 tRNA 66 78 35.925003 172.267766 104.0963845 2.017435646 0.180007 138 92 SH21899 21899 copy of SH19199 30.156532 150.135231 90.1458815 1.95494589 0.022605 138 93 SH9909 9909 RUF5-1 RUF5-1 351 370 33.958672 162.005882 97.982277 1.991147528 0.187576 138 94 SH233 233 Arg3 21-36 21 36 43.529596 177.208011 110.3688035 2.042846334 0.283606 138 95 SH4623 4623 snR3 snR3 31 48 39.756625 210.7011 125.2288625 2.097704436 -0.166419 138 96 SH5054 5054 snR10 3' 30.246018 174.125592 102.185805 2.009390571 -0.10216 138 97 SH15263 15263 MT 9S rRNA 9S 32.185595 232.250812 32.185595 201.065217 116.625406 2.066793169 -0.212509 138 98 SH7687 7687 snoRNA cluster1 intergenic 28.361108 195.639771 28.361108 168.278663 98.3198855 1.992641364 -0.197202 138 99 SH10492 10492 RUF8 RUF8 386 403 35.975507 203.263604 119.6195555 2.077802184 -0.148092 138 100 SH21024 21024 YMR079W spliced 83.94932 271.190722 177.570021 2.249369646 -0.108721 138 101 SH6668 6668 snR48 3' 30.034614 189.037884 109.536249 2.039557865 -0.198758 138 102 SH9352 9352 RUF1 RUF1 336 354 33.667462 157.014839 95.3411505 1.979280388 0.203269 138 103 SH8435 8435 snoRNA cluster 5 intergenic/snR128 29.686602 176.739315 29.686602 148.052713 88.8696575 1.948753506 0.001326 138 104 SH19074 19074 YOR293W_15_867094_867848_INTRON_53_489 intron 71.1985 309.114566 71.1985 238.916066 155.057283 2.19049217 -0.005883 139 2 SH7778 7778 snoRNA cluster1 intergenic 55.30914 279.347973 55.30914 225.038833 140.1739865 2.146667425 -0.088981 139 3 SH14265 14265 MT VAR1 includes 5’ processing site VAR1 29.339312 184.838424 29.339312 156.499112 92.919212 1.968105518 -0.06804 139 4 SH18349 18349 YML124C_13_23684_22049_INTRON_26_323 intron 37.397785 192.493194 37.397785 156.095409 96.746597 1.985635698 0.394491 139 5 SH10558 10558 RUF8 RUF8 716 732 37.528512 167.437151 102.4828315 2.010651116 0.280312 139 6 SH5387 5387 snR31 snR31 1 18 39.701526 205.572228 122.636877 2.088621082 -0.110936 139 7 SH13524 13524 MT COX1 intronic 29.823041 216.153159 29.823041 187.330118 108.5765795 2.035736156 -0.202753 139 8 SH3671 3671 Val2 3' flank 27.951191 154.171064 91.0611275 1.959333023 -0.156767 139 9 SH7576 7576 snR189 5' 32.120457 158.864049 95.492253 1.97996814 0.103439 139 10 SH16788 16788 YGL103W_7_310965_311925_INTRON_50_560 intron 31.179205 227.002207 31.179205 196.823002 114.0011035 2.056909055 -0.214581 139 11 SH860 860 Glu2 66-72 + 3' flank 66 36.261922 150.570226 93.416074 1.970421611 0.384627 139 12 SH21453 21453 copy of SH379 36.156105 205.398584 120.7773445 2.081985477 -0.167305 139 13 SH21625 21625 copy of SH7730 28.893763 151.721903 90.307833 1.955725421 -0.074684 139 14 SH7818 7818 snoRNA cluster1 intergenic 29.656915 185.002557 29.656915 156.345642 93.0012785 1.968488919 -0.044901 139 15 SH18197 18197 YML024W_13_225889_226697_INTRON_4_401 intron 31.347654 221.555674 31.347654 191.20802 111.277837 2.046408675 -0.159286 139 16 SH13036 13036 MT COX1 COX1ai2 29.068989 175.78582 29.068989 147.716831 88.39291 1.946417432 -0.040855 139 17 SH417 417 Asp1 5' flank 28.788767 130.885669 79.837218 1.902205395 0.033238 139 18 SH20861 20861 YLR078C spliced 32.402441 167.579517 99.990979 1.999960821 0.065515 139 19 SH9159 9159 snR7 U5 RNA U5 66 85 30.291046 164.206975 97.2490105 1.987885191 -0.040735 139 20 SH3638 3638 Val2 5' flank 30.173771 159.781558 94.9776645 1.977621486 -0.026654 139 21 SH15649 15649 YBR189W_2_604466_605466_INTRON_8_420 intron 29.168815 178.924575 29.168815 150.75576 89.9622875 1.95406049 -0.049847 139 22 SH5977 5977 snR36 341-355 + 3' 341 360 38.681815 203.366647 121.024231 2.082872332 -0.101901 139 23 SH10415 10415 RUF8 RUF8 1 18 30.139562 156.924381 93.5319715 1.970960089 -0.014391 139 24 SH11308 11308 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2/25S 3426 3446 30.176183 160.305439 95.240811 1.978823085 -0.02914 139 25 SH427 427 Asp1 5' flank 30.207796 176.017791 103.1127935 2.013312553 -0.115505 139 26 SH8489 8489 snR19 / U1 RNA 5' 32.132236 150.800507 91.4663715 1.961261451 0.150718 139 27 SH5270 5270 snR30 snR30 201 217 30.218586 174.8393 102.528943 2.01084648 -0.108012 139 28 SH2170 2170 Met2 5' flank 29.241236 165.784654 97.512945 1.989062273 -0.121682 139 29 SH19886 19886 Positive Control 2 45.417836 219.780192 132.599014 2.122540295 -0.178097 139 30 SH15167 15167 MT tRNA Val 3' 30.104698 181.749447 30.104698 152.644749 91.3747235 1.960826076 0.005606 139 31 SH13366 13366 MT COX1 intronic 26.256699 151.950366 26.256699 126.693667 76.475183 1.883520525 -0.129128 139 32 SH5932 5932 snR36 snR36 116 132 37.567115 156.582501 97.074808 1.98710654 0.394646 139 33 SH3358 3358 Thr3 3' flank 31.810454 153.606756 92.708605 1.967120046 0.114894 139 34 SH13521 13521 MT COX1 intronic 29.853894 203.975492 29.853894 175.121598 102.487746 2.010671942 -0.132349 139 35 SH7619 7619 snR189 snR189 166 181 31.670371 166.503565 99.086968 1.996016539 0.02934 139 36 SH2020 2020 Lys3 tRNA-intron/exon 46 62 31.611827 186.603217 109.107522 2.037854692 -0.108097 139 37 SH7616 7616 snR189 snR189 151 169 31.573011 144.612486 88.0927485 1.94494016 0.148225 139 38 SH4344 4344 telomerase RNA telomerase 756 777 27.815022 146.490782 87.152902 1.940281853 -0.127229 139 39 SH21434 21434 oligo-dT; WTP_216 23345.40246 24397.82469 23871.61358 4.377881776 -0.444162 139 40 SH11005 11005 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1911 1928 13761.84652 13820.54933 13791.19793 4.139601991 -0.225311 139 41 SH16324 16324 YDR471W_4_1401759_1402553_INTRON_32_415 intron 33.657961 205.553349 33.657961 172.895388 103.2766745 2.014002245 0.095784 139 42 SH9471 9471 RUF2 RUF2 196 212 35.703719 145.117677 90.410698 1.956219822 0.393101 139 43 SH18767 18767 YNL246W_14_185459_186348_INTRON_33_127 intron 32.066934 178.231788 32.066934 147.164854 89.615894 1.952385042 0.166266 139 44 SH11361 11361 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3691 3708 45.658166 190.302309 117.9802375 2.071809266 0.149343 139 45 SH18439 18439 YMR142C_13_551206_550205_INTRON_5_406 intron 28.527507 191.821245 28.527507 164.293738 96.4106225 1.984124887 -0.165647 139 46 SH6337 6337 snR43 5' 28.630392 181.596862 105.113627 2.021659022 -0.247466 139 47 SH150 150 Arg1 3' flank 28.70013 149.149233 88.9246815 1.949022318 -0.075271 139 48 SH8689 8689 LSR1 / U2 RNA U2 86 107 30.672105 138.297179 84.484642 1.926777768 0.123553 139 49 SH2807 2807 Pro6 3' flank 38.440505 184.520115 111.48031 2.047198168 0.109497 139 50 SH18921 18921 YOL121C_15_92849_92025_INTRON_21_410 intron 30.679729 179.063463 30.679729 149.383734 90.0317315 1.954395603 0.062367 139 51 SH11578 11578 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4776 4789 40.383494 184.137693 112.2605935 2.050227334 0.148902 139 52 SH8029 8029 snoRNA cluster 2 snR55 30.710955 187.666281 30.710955 157.955326 94.3331405 1.974664293 0.01928 139 53 SH10010 10010 RUF5-1 3' 32.718802 179.333239 106.0260205 2.025412461 0.000191 139 54 SH13984 13984 MT COB intronic 24708.80479 46370.68157 24708.80479 21662.87678 23185.84078 4.365222849 -0.18167 139 55 SH12380 12380 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.893921 213.558928 36.893921 177.665007 107.279464 2.030516595 0.15983 139 56 SH21184 21184 YOL047C spliced 31.167122 178.234313 104.7007175 2.019949658 -0.069775 139 57 SH18977 18977 YOR096W_15_505793_506766_INTRON_145_545 intron 31.317235 207.551435 31.317235 177.2342 104.2757175 2.018183187 -0.055076 139 58 SH5127 5127 snR11 snR11 236 252 31.446882 156.671465 94.0591735 1.973401158 0.075035 139 59 SH18885 18885 YOL047C_15_242745_241612_INTRON_244_306 intron 31.543238 225.814626 31.543238 195.271388 113.407313 2.054641061 -0.18732 139 60 SH9459 9459 RUF2 RUF2 136 155 29.606522 168.942925 99.2747235 1.996838686 -0.111409 139 61 SH15755 15755 YCR031C_3_178212_177492_INTRON_8_314 intron 29.626499 193.37745 29.626499 164.750951 97.188725 1.987615885 -0.089451 139 62 SH9358 9358 RUF1 RUF1 366 385 27.625993 150.446201 89.036097 1.949566114 -0.162354 139 63 SH14042 14042 MT COB Cytbi4 30.595897 233.257964 30.595897 203.662067 117.128982 2.068664369 -0.294843 139 64 SH10791 10791 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 841 861 29.57407 124.085445 76.8297575 1.885529462 0.132804 139 65 SH7022 7022 snR62 5' 31.547723 181.272875 106.410299 2.026983664 -0.06426 139 66 SH13824 13824 MT COB Cytbi2 33.536107 187.041324 33.536107 154.505217 94.020662 1.973223305 0.212331 139 67 SH21100 21100 YNL050C spliced 29.563984 154.28769 91.925837 1.963437593 -0.04068 139 68 SH4511 4511 U3b (snR17b) U3b 111 127 31.588841 168.640516 100.1146785 2.000497757 0.011565 139 69 SH7376 7376 snR68 snR68 101 117 92.001844 274.827025 183.4144345 2.263433511 -0.04748 139 70 SH17615 17615 YJR021C_10_469271_468247_INTRON_317_396 intron 29.695721 168.457728 29.695721 139.762007 84.728864 1.928031384 0.047209 139 71 SH9770 9770 RUF4 RUF4 626 638 39.802506 175.073491 107.4379985 2.031157909 0.248585 139 72 SH4647 4647 snR3 snR3 151 168 29.822744 167.52015 98.671447 1.994191497 -0.089253 139 73 SH12603 12603 MT_15S MT_15S 29.881387 168.062019 29.881387 139.180632 84.5310095 1.927016056 0.063584 139 74 SH2050 2050 Lys4 5' flank 29.928643 146.037798 87.9832205 1.944399855 0.029279 139 75 SH8203 8203 snoRNA cluster 3; intergenic 33.999703 197.721783 33.999703 164.72208 99.3608915 1.997215479 0.17294 139 76 SH16640 16640 YFR024C-A_6_203420_201947_INTRON_48_165 intron 198.03499 575.32741 198.03499 378.29242 288.163705 2.459639279 0.158318 139 77 SH769 769 Gln4 3' flank 38.043904 181.913079 109.9784915 2.041307758 0.133151 139 78 SH14748 14748 MT ORF11; tRNA Leu; tRNA Gln ORF11 35.980978 199.419014 35.980978 164.438036 100.209507 2.000908926 0.260366 139 79 SH1756 1756 Leu7 76-84 + 3' flank 76 33.900042 161.820181 97.8601115 1.990605706 0.185511 139 80 SH10260 10260 RUF7 5' 41.867457 222.415187 132.141322 2.121038647 -0.256637 139 81 SH9757 9757 RUF4 RUF4 561 577 31.703891 170.050355 100.877123 2.003792688 0.009902 139 82 SH9544 9544 RUF3 RUF3 106 122 37.568687 174.453225 106.010956 2.025350751 0.212326 139 83 SH12761 12761 MT COX1 COX1ai1 59.328448 266.510614 59.328448 208.182166 133.755307 2.126311023 0.129825 139 84 SH11074 11074 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2256 2274 29.280241 133.272471 81.276356 1.909964224 0.054587 139 85 SH2670 2670 Pro4 tRNA 16 32 156.406782 257.729759 207.0682705 2.316113556 0.600759 139 86 SH884 884 Glu3 5' flank 36.714449 186.113788 111.4141185 2.046940229 0.058265 139 87 SH5416 5416 snR31 snR31 146 160 11050.1203 5515.279223 8282.699764 3.918171919 0.952535 139 88 SH8149 8149 snoRNA cluster 3; intergenic 30.475121 163.579765 30.475121 134.104644 82.2898825 1.915346442 0.133974 139 89 SH18844 18844 YNL312W_14_48286_49215_INTRON_8_115 intron 180.178893 542.82883 180.178893 363.649937 271.914415 2.434432231 0.12362 139 90 SH7321 7321 snR66 3' 30.186863 138.014322 84.1005925 1.924799055 0.091564 139 91 SH1345 1345 Ile3 tRNA 106 120 31.998029 149.523863 90.760946 1.957899014 0.148919 139 92 SH1354 1354 Ile3 3' flank 28.149335 151.698819 89.924077 1.953875989 -0.129291 139 93 SH3686 3686 Val3 5' flank 50.9463 200.573835 125.7600675 2.099542762 0.101771 139 94 SH15339 15339 YAL030W_1_87288_87754_INTRON_103_215 intron 28.147506 163.703882 28.147506 136.556376 82.351941 1.91567384 -0.047477 139 95 SH6479 6479 snR45 3' 30.075415 138.077992 84.0767035 1.924675675 0.083414 139 96 SH773 773 Gln4 3' flank 30.111566 191.271025 110.6912955 2.04411347 -0.208035 139 97 SH18697 18697 YNL130C_14_381156_379555_INTRON_30_470 5' exon 33.945797 231.681707 33.945797 198.73591 116.3408535 2.065732246 -0.140117 139 98 SH18734 18734 YNL162W_14_331319_332151_INTRON_5_516 5' exon 28.232766 183.420347 28.232766 156.187581 92.2101735 1.964778839 -0.146211 139 99 SH3225 3225 Thr1 5' flank 32.001563 180.051468 106.0265155 2.025414489 -0.033106 139 100 SH6614 6614 snR47 3' 26.223179 115.343212 70.7831955 1.849930165 -0.053424 139 101 SH20735 20735 YJL189W spliced 28.947241 154.248842 91.5980415 1.961886188 -0.084227 139 102 SH3860 3860 RNaseP RNaseP 266 280 31.616183 145.145378 88.3807805 1.946357833 0.148081 139 103 SH20800 20800 YKL157W spliced 33.292257 186.549614 109.9209355 2.041080416 -0.045567 139 104 SH4238 4238 telomerase RNA telomerase 226 243 27.449503 151.652521 89.551012 1.952070498 -0.182076 140 2 SH17801 17801 YKL190W_11_82949_83552_INTRON_53_128 exon/intron 29.201865 207.966125 29.201865 179.76426 104.4830625 2.019045894 -0.200215 140 3 SH7941 7941 snoRNA cluster1 3' 29.252032 168.844273 29.252032 140.592241 84.9221365 1.929020912 0.010889 140 4 SH21531 21531 copy of SH3751 31.311411 150.240374 90.7758925 1.957970528 0.10003 140 5 SH10373 10373 RUF7 RUF7 476 488 45.376919 204.706326 125.0416225 2.0970546 -0.018811 140 6 SH16288 16288 YDR450W_4_1359912_1360787_INTRON_48_482 exon/intron 28.559287 183.823496 28.559287 156.264209 92.411748 1.965727185 -0.122745 140 7 SH2612 2612 Pro3 tRNA 11 28 55.830851 164.891241 110.361046 2.042815808 0.599573 140 8 SH21344 21344 YPR098C spliced 318.64799 570.158839 444.4034145 2.647777387 0.012884 140 9 SH1918 1918 Lys1 tRNA 46 60 613.688255 850.470874 732.0795645 2.864558284 0.165935 140 10 SH3366 3366 Thr4 5' flank 30.013238 147.996301 89.0047695 1.94941328 0.024345 140 11 SH4001 4001 RNase MRP 3' 30.006117 189.73498 109.8705485 2.040881293 -0.204272 140 12 SH6478 6478 snR45 3' 29.915823 148.488682 89.2022525 1.950375821 0.014907 140 13 SH3957 3957 RNase MRP RNaseMRP 201 216 31.747142 182.03779 106.892466 2.028947096 -0.061182 140 14 SH4833 4833 snR8 5' 31.49102 150.932428 91.211724 1.960050664 0.108177 140 15 SH13720 13720 MT tRNAGlu (and 5' processing site for COB) 3' 31.190633 203.97336 31.190633 173.782727 102.48668 2.010667425 -0.042668 140 16 SH2153 2153 Met1 3' flank 48.470669 202.351296 125.4109825 2.09833557 0.049137 140 17 SH4483 4483 U3b (snR17b) 5' 32.523901 143.601623 88.062762 1.944792303 0.215487 140 18 SH10950 10950 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1636 1656 1222.943131 2107.385094 1665.164113 3.221457042 -0.402056 140 19 SH14352 14352 MT ORF9 and ORF10 (hypothetical) 5' 33.994788 197.212469 33.994788 164.217681 99.1062345 1.996100976 0.175786 140 20 SH14314 14314 MT VAR1 includes 5’ processing site VAR1 33.881547 213.690737 33.881547 180.80919 107.3453685 2.030783311 0.028193 140 21 SH14237 14237 MT tRNA Ser 5' 50.976306 292.019003 50.976306 242.042697 146.5095015 2.165865791 -0.305785 140 22 SH17060 17060 YGR214W_7_920570_921783_INTRON_91_545 intron 31.96481 203.747652 31.96481 172.782842 102.373826 2.010188934 0.009028 140 23 SH13155 13155 MT COX1 intronic 31.071179 195.30407 31.071179 165.232891 98.152035 1.991899308 0.001416 140 24 SH12373 12373 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.823222 210.580733 37.823222 173.757511 105.7903665 2.024446122 0.227158 140 25 SH11690 11690 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5336 5349 37522.96351 31767.88161 34645.42256 4.539645863 -0.247618 140 26 SH14882 14882 MT tRNA Ala tRNA 32.219758 211.292657 32.219758 180.072899 106.1463285 2.025904977 -0.025167 140 27 SH14100 14100 MT COB Cytbi4 32.246785 187.282435 32.246785 156.03565 94.1412175 1.973779811 0.129029 140 28 SH17078 17078 YGR225W_7_945138_946919_INTRON_1184_1276 intron/exon 32.245884 195.70577 32.245884 164.459886 98.352885 1.992787104 0.075553 140 29 SH18465 18465 YMR143W_13_551927_552902_INTRON_25_568 intron 36.050487 238.021602 36.050487 202.971115 119.510801 2.077407157 -0.143483 140 30 SH1298 1298 Ile2 3' flank 32.170802 158.948432 95.559617 1.9802744 0.105828 140 31 SH8932 8932 snR17a / U3a 5' 32.104421 155.063189 93.583805 1.971200699 0.12634 140 32 SH12233 12233 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.926458 191.692975 33.926458 158.766517 96.3464875 1.983835886 0.206323 140 33 SH14206 14206 MT COB 3' 30.033507 217.058087 30.033507 188.02458 109.0290435 2.037542202 -0.193366 140 34 SH6799 6799 snR52 5' 31.82959 161.924434 96.877012 1.986220735 0.067048 140 35 SH12872 12872 MT COX1 COX1ai1 31.728455 222.574908 31.728455 191.846453 111.787454 2.048393065 -0.150447 140 36 SH17787 17787 YKL186C_11_93537_92746_INTRON_71_233 5' exon 37.280069 213.459231 37.280069 177.179162 107.2296155 2.030314749 0.176227 140 37 SH21086 21086 YMR292W spliced 35.316801 153.846485 94.581643 1.975806854 0.313387 140 38 SH14230 14230 MT ATP9 3' 31.522038 215.471752 31.522038 184.949714 108.235876 2.034371236 -0.096486 140 39 SH19485 19485 YPT1 42.775019 200.682134 121.7285765 2.085392543 -0.011168 140 40 SH21442 21442 TH294 - control cDNA - flipped; WTP_224 53.187798 216.797248 134.992523 2.130309714 -0.039315 140 41 SH13929 13929 MT COB Cytbi3 27.882946 159.86133 27.882946 132.978384 80.430665 1.905421659 -0.045659 140 42 SH15663 15663 YBR189W_2_604466_605466_INTRON_8_420 intron 33.643468 185.737189 33.643468 153.093721 93.3685945 1.970200821 0.227631 140 43 SH272 272 Arg4 5' flank 31.891549 157.176514 94.5340315 1.975588179 0.10092 140 44 SH5790 5790 snR35 snR35 136 150 32.032258 169.132962 100.58261 2.002522901 0.03466 140 45 SH3279 3279 Thr2 5' flank - tRNA10 10 35.986117 178.753604 107.3698605 2.030882389 0.119678 140 46 SH19123 19123 YPL031C_16_493033_492014_INTRON_18_119 3' exon 30.348591 188.072084 30.348591 158.723493 94.536042 1.975597415 -0.009283 140 47 SH6577 6577 snR47 5' - 8 -9 8 28.494932 140.356717 84.4258245 1.926475311 -0.043032 140 48 SH2166 2166 Met2 5' flank 28.527296 159.124499 93.8258975 1.972322727 -0.139765 140 49 SH10443 10443 RUF8 RUF8 141 156 91.470501 243.253101 167.361801 2.223656341 0.183747 140 50 SH15035 15035 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.542553 179.479119 28.542553 151.936566 90.2395595 1.955396967 -0.101295 140 51 SH9123 9123 snR14 / U4 RNA 3' 40.118471 187.920845 114.019658 2.056979734 0.099951 140 52 SH13809 13809 MT COB Cytbi2 30.52789 178.829595 30.52789 149.301705 89.9147975 1.953831171 0.052515 140 53 SH16163 16163 YDR129C_4_715372_713333_INTRON_22_132 3' exon 30.61395 165.162759 30.61395 135.548809 83.0813795 1.919503699 0.135199 140 54 SH3311 3311 Thr3 5' flank 37.540792 177.160195 107.3504935 2.030804045 0.181391 140 55 SH20045 20045 YBR189W spliced 30.900544 173.524648 102.212596 2.009504419 -0.058626 140 56 SH15175 15175 MT COX3 5' 29.113967 172.219534 29.113967 144.105567 86.609767 1.93756687 -0.01831 140 57 SH16482 16482 YER102W_5_362729_363698_INTRON_1_360 intron 35.191756 242.93042 35.191756 208.738664 121.96521 2.086235968 -0.221563 140 58 SH4809 4809 snR5 3' 29.40931 145.045299 87.2273045 1.940652452 -0.002118 140 59 SH13688 13688 MT ORF 5 (hypothetical) ORF5 33.488614 197.462145 33.488614 164.973531 99.2310725 1.996647685 0.143076 140 60 SH14880 14880 MT tRNA Ala tRNA 30.570551 176.320859 30.570551 146.750308 88.6604295 1.947729831 0.069376 140 61 SH2463 2463 Phe5 86-91 + 3' flank 86 29.601111 134.559311 82.080211 1.914238464 0.070052 140 62 SH12897 12897 MT COX1 intronic 29.599379 185.308348 29.599379 156.708969 93.154174 1.969202319 -0.050811 140 63 SH16123 16123 YDR064W_4_579453_580447_INTRON_22_560 intron 33.568294 230.447803 33.568294 197.879509 115.7239015 2.063423067 -0.138623 140 64 SH942 942 Gly1 5' flank 31.549451 174.413448 102.9814495 2.012759 -0.024966 140 65 SH4537 4537 U3b (snR17b) U3b 241 257 69.541694 247.344903 158.4432985 2.199873875 -0.096428 140 66 SH1485 1485 Leu2 3' flank 31.526833 166.261529 98.894181 1.995170738 0.022326 140 67 SH21365 21365 Ile2_3 spliced 145.967909 280.740483 213.354196 2.329101188 0.371007 140 68 SH14107 14107 MT COB cytbi4/intronic 31.572986 208.526868 31.572986 177.953882 104.763434 2.020209726 -0.043989 140 69 SH6413 6413 snR45 5' 31.621551 180.184049 105.9028 2.024907443 -0.05377 140 70 SH3168 3168 Ser5 5' flank 31.682001 157.706761 94.694381 1.976324209 0.085158 140 71 SH13380 13380 MT COX1 Exon 5b 31.748742 208.150955 31.748742 177.402213 104.5754775 2.019429856 -0.030457 140 72 SH9512 9512 RUF3 5' 29.806213 144.398348 87.1022805 1.940029526 0.029599 140 73 SH9793 9793 RUF4 RUF4 741 759 31.875565 189.702214 110.7888895 2.044496209 -0.125939 140 74 SH1136 1136 His1 5' flank 29.907053 180.900396 105.4037245 2.022855957 -0.162009 140 75 SH14276 14276 MT VAR1 includes 5’ processing site VAR1 33.972056 225.23748 33.972056 192.265424 113.11874 2.053534559 -0.07228 140 76 SH20937 20937 YLR406C spliced 42.072769 213.475911 127.77434 2.106443646 -0.161233 140 77 SH9401 9401 RUF1 3' 45.093678 203.049007 124.0713425 2.093671481 -0.0045 140 78 SH19859 19859 Negative Control 33.933195 176.041413 104.987304 2.021136783 0.075111 140 79 SH16670 16670 YFR032C-A_6_223758_223245_INTRON_1_331 intron 33.875859 205.692071 33.875859 172.816212 103.3460355 2.014293821 0.104287 140 80 SH7710 7710 snoRNA cluster1 snR77 55.962989 285.641291 55.962989 230.678302 143.3206455 2.156308756 -0.132697 140 81 SH3850 3850 RNaseP RNaseP 216 228 33.695335 171.306999 102.501167 2.01072881 0.112688 140 82 SH19285 19285 YPL143W_16_282121_282969_INTRON_20_544 3' exon 33.569014 214.123922 33.569014 181.554908 107.561961 2.031658711 0.010146 140 83 SH15379 15379 YBL027W_2_168385_169338_INTRON_3_386 intron 29.445692 156.550666 29.445692 128.104974 78.775333 1.896390248 0.097437 140 84 SH16959 16959 YGR029W_7_543547_544199_INTRON_87_169 3' exon 35.215224 207.634134 35.215224 173.41891 104.317067 2.018355368 0.144863 140 85 SH2620 2620 Pro3 tRNA-intron 51 67 104.963778 299.700124 202.331951 2.306064469 -0.08475 140 86 SH8774 8774 LSR1 / U2 RNA U2 511 527 38.686896 151.889911 95.2884035 1.979040051 0.481175 140 87 SH21619 21619 copy of SH7514 62.777046 227.158961 144.9680035 2.161272158 -0.008443 140 88 SH11436 11436 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4066 4081 75.972216 207.882484 141.92735 2.152066094 0.332228 140 89 SH12109 12109 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7431 7448 57.20576 231.893051 144.5494055 2.16001631 -0.126915 140 90 SH8183 8183 snoRNA cluster 3; snR70 79.981453 329.529152 79.981453 250.547699 165.264576 2.218179774 0.001517 140 91 SH13427 13427 MT COX1 intronic 35.755884 196.125122 35.755884 161.369238 98.562561 1.993711979 0.284638 140 92 SH20317 20317 YER044C-A spliced 30.931132 136.431318 83.681225 1.922628029 0.15185 140 93 SH17927 17927 YLR078C_12_286560_285737_INTRON_4_92 intron 33.731038 216.232487 33.731038 183.501449 108.6162435 2.035894779 -0.002082 140 94 SH21303 21303 YPL218W spliced 37.511418 157.314471 97.4129445 1.988616671 0.384998 140 95 SH5926 5926 snR36 snR36 86 104 776.028136 1102.554167 939.2911515 2.972800231 0.041891 140 96 SH14180 14180 MT COB Exon6 29.983336 174.981056 29.983336 145.99772 87.990528 1.944435924 0.03329 140 97 SH8436 8436 snoRNA cluster 5 intergenic/snR128 30.003105 187.927914 30.003105 158.924809 94.463957 1.975266134 -0.03407 140 98 SH13343 13343 MT COX1 COX1-ai5a 28.10702 172.399775 28.10702 145.292755 86.6998875 1.938018534 -0.098836 140 99 SH16657 16657 YFR032C-A_6_223758_223245_INTRON_1_331 5' exon 33.757725 233.711077 33.757725 200.953352 117.3555385 2.069503591 -0.168213 140 100 SH8867 8867 LSR1 / U2 RNA U2 976 992 31.782058 166.499527 99.1407925 1.996252386 0.035945 140 101 SH16408 16408 YER056C-A_5_270183_269421_INTRON_38_434 intron 31.657167 207.744358 31.657167 177.087191 104.372179 2.01858475 -0.034051 140 102 SH9588 9588 RUF3 RUF3 326 347 31.490561 153.535283 92.512922 1.966202398 0.094296 140 103 SH10908 10908 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1426 1442 36583.46044 35875.94963 36229.70504 4.559064798 -0.473543 140 104 SH5494 5494 snR32 snR32 131 143 36.661773 152.226001 94.443887 1.975173853 0.394015 141 2 SH16772 16772 YGL103W_7_310965_311925_INTRON_50_560 intron 29.188237 183.062903 29.188237 154.874666 92.0314515 1.963936272 -0.070301 141 3 SH4920 4920 snR9 snR9 6 27 51.109527 192.493574 121.8015505 2.085652817 0.195191 141 4 SH11889 11889 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6331 6348 2265.040261 1090.672106 1677.856184 3.224754733 1.443012 141 5 SH18203 18203 YML024W_13_225889_226697_INTRON_4_401 intron 29.371093 167.201698 29.371093 138.830605 84.100849 1.92480038 0.02927 141 6 SH5500 5500 snR32 snR32 161 177 110.232104 313.547594 211.889849 2.326110151 -0.121393 141 7 SH13511 13511 MT COX1 intronic 31.603573 183.23996 31.603573 152.636387 92.11998 1.964353835 0.106487 141 8 SH15305 15305 YAL001C_1_151163_147591_INTRON_71_160 intron 27.726722 184.90934 27.726722 158.182618 92.95467 1.968271213 -0.194028 141 9 SH11546 11546 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4616 4629 147.334185 308.522136 227.9281605 2.357797986 0.205936 141 10 SH4568 4568 U3b (snR17b) U3b 396 412 29.879831 158.375799 94.127815 1.973717977 -0.039811 141 11 SH7942 7942 snoRNA cluster1 3' 29.862828 175.233491 29.862828 146.370663 88.1167455 1.945058449 0.022866 141 12 SH13477 13477 MT COX1 intronic 27.762263 173.976702 27.762263 147.214439 87.488351 1.941950231 -0.135068 141 13 SH11927 11927 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6521 6534 31.585022 181.941839 106.7634305 2.02842252 -0.066425 141 14 SH13905 13905 MT COB Exon3 56.136835 256.624783 56.136835 201.487948 128.8123915 2.109957643 0.15848 141 15 SH2896 2896 Pro8 tRNA 1 13 957.020521 1497.331172 1227.175847 3.088906799 -0.179967 141 16 SH4618 4618 snR3 snR3 6 24 71.680163 217.919291 144.799727 2.160767743 0.186787 141 17 SH12559 12559 MT_15S MT_15S 148.606024 532.280002 148.606024 384.673978 266.640001 2.425925302 -0.187291 141 18 SH8913 8913 LSR1 / U2 RNA 3' 30.226175 173.361676 101.7939255 2.007721862 -0.09892 141 19 SH19099 19099 YOR312C_15_901173_900242_INTRON_2_427 intron 31.965445 201.20791 31.965445 170.242465 101.103955 2.004768145 0.024114 141 20 SH6396 6396 snR43 3' 31.874264 138.866138 85.370201 1.931306304 0.200779 141 21 SH14049 14049 MT COB Cytbi4 29.964724 188.223535 29.964724 159.258811 94.6117675 1.975945156 -0.038427 141 22 SH9743 9743 RUF4 RUF4 491 507 30.006239 145.242965 87.624602 1.942626058 0.039073 141 23 SH11507 11507 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4421 4441 734.175908 1082.83555 908.505729 2.95832767 0.000509 141 24 SH18825 18825 YNL302C_14_62942_61957_INTRON_21_571 intron 92.545375 384.492429 92.545375 292.947054 192.7462145 2.284985857 -0.16466 141 25 SH8160 8160 snoRNA cluster 3; snR70 32.198713 205.348307 32.198713 174.149594 103.1741535 2.013570914 0.014652 141 26 SH17558 17558 YJL189W_10_75932_76473_INTRON_7_392 intron 30.367761 219.581215 30.367761 190.213454 110.2906075 2.042538529 -0.18853 141 27 SH13268 13268 MT COX1 intronic 28.501952 206.181446 28.501952 178.679494 103.590723 2.015320864 -0.239417 141 28 SH15787 15787 YDL029W_4_399336_400634_INTRON_23_145 intron 32.367428 169.576584 32.367428 138.209156 85.288292 1.930889417 0.236484 141 29 SH3951 3951 RNase MRP RNaseMRP 171 187 32.35667 148.944898 90.650784 1.957371564 0.175193 141 30 SH6459 6459 snR45 snR45 141 158 34.235061 186.196811 110.215936 2.042244393 -0.00892 141 31 SH18818 18818 YNL302C_14_62942_61957_INTRON_21_571 intron 28.414202 180.68117 28.414202 153.266968 90.840585 1.958279922 -0.117625 141 32 SH1445 1445 Leu2 5' flank - tRNA12 12 229.871169 511.26159 370.5663795 2.568866014 -0.194756 141 33 SH21342 21342 YPR098C spliced 37.752331 159.0011 98.3767155 1.992892319 0.374672 141 34 SH16836 16836 YGL178W_7_167356_170575_INTRON_4_643 intron 28.121302 193.702137 28.121302 166.580835 97.3510685 1.988340723 -0.206609 141 35 SH5223 5223 snR30 5' 29.894612 149.666009 89.7803105 1.953181103 0.007037 141 36 SH15066 15066 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.721253 186.918963 30.721253 157.19771 93.9594815 1.972940612 0.02387 141 37 SH20850 20850 YLR061W spliced 35.314003 188.610189 111.962096 2.04907102 0.001732 141 38 SH18805 18805 YNL301C_14_64561_63569_INTRON_113_544 intron 31.492118 197.84501 31.492118 167.352892 99.422505 1.997484701 0.013619 141 39 SH5864 5864 snR35 snR35 506 522 31.462667 170.254113 100.85839 2.003712031 -0.005592 141 40 SH12847 12847 MT COX1 COX1ai1 29.606534 199.97783 29.606534 171.371296 100.488915 2.002118157 -0.125908 141 41 SH18709 18709 YNL130C_14_381156_379555_INTRON_30_470 intron 29.657843 200.538992 29.657843 171.881149 100.769496 2.003329086 -0.12569 141 42 SH3478 3478 Tyr1 5' flank 65.577048 255.069884 160.323466 2.204997093 -0.209015 141 43 SH16466 16466 YER093C-A_5_348396_347908_INTRON_125_199 intron/exon 31.727925 192.315852 31.727925 161.587927 96.657926 1.985237472 0.063181 141 44 SH7139 7139 snR63 snR63 201 218 42.266391 180.417207 111.341799 2.046658234 0.224917 141 45 SH1017 1017 Gly2 3' flank 26.260135 143.427626 84.8438805 1.928620524 -0.231672 141 46 SH12256 12256 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.133329 188.931824 30.133329 159.798495 94.965912 1.977567743 -0.029523 141 47 SH11893 11893 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6351 6368 1289.067832 1029.59122 1159.329526 3.064206897 0.801651 141 48 SH15720 15720 YBR255C-A_2_727032_726576_INTRON_64_157 exon/intron 30.218016 234.654676 30.218016 205.43666 117.827338 2.071246066 -0.32437 141 49 SH12976 12976 MT COX1 COX1ai2 30.232294 210.719026 30.232294 181.486732 105.859513 2.024729892 -0.145077 141 50 SH13619 13619 MT ATP6 5' / ATP6 30.246428 169.714244 30.246428 140.467816 85.357122 1.931239763 0.081983 141 51 SH5808 5808 snR35 snR35 226 244 53.289277 194.563413 123.926345 2.093163641 0.199553 141 52 SH17353 17353 YIL018W_9_316766_317930_INTRON_5_404 3' exon 39.935961 233.113319 39.935961 194.177358 117.0566595 2.068396126 0.022915 141 53 SH17625 17625 YJR094W-A_10_608000_608553_INTRON_3_277 intron 63.266156 275.158069 63.266156 212.891913 138.0790345 2.140127742 0.132158 141 54 SH10708 10708 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 426 441 62.600658 209.206837 135.9037475 2.133231432 0.160123 141 55 SH17174 17174 YHR021C_8_148660_147862_INTRON_4_553 intron 30.77899 202.872171 30.77899 173.093181 101.9360855 2.008327952 -0.063464 141 56 SH8261 8261 snoRNA cluster4 5'/snR67 30.971499 228.793615 30.971499 198.822116 114.8968075 2.060307962 -0.23964 141 57 SH18621 18621 YNL096C_14_444312_443395_INTRON_145_489 exon/intron 31.156794 227.460367 31.156794 197.303573 114.2301835 2.057780874 -0.219557 141 58 SH4471 4471 U3b (snR17b) 5' 31.316371 160.642289 95.97933 1.982177714 0.044737 141 59 SH10501 10501 RUF8 RUF8 431 450 31.437442 146.759865 89.0986535 1.949871141 0.127354 141 60 SH11053 11053 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2151 2164 29204.59624 25582.39822 27393.49723 4.437647481 -0.229055 141 61 SH21777 21777 copy of SH14041 31.551503 166.129116 98.8403095 1.994934097 0.024598 141 62 SH4531 4531 U3b (snR17b) U3b 211 226 39.534395 185.391149 112.462772 2.051008784 0.119092 141 63 SH2364 2364 Phe3 3' flank 914.224137 1133.95833 1024.091234 3.010338648 0.205727 141 64 SH16672 16672 YFR032C-A_6_223758_223245_INTRON_1_331 intron 29.526725 157.058202 29.526725 128.531477 79.029101 1.897787042 0.100469 141 65 SH12458 12458 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank / 5S 741.619838 1703.479294 741.619838 962.859456 852.239647 2.930561734 0.203265 141 66 SH10196 10196 RUF6 RUF6 826 845 31.488856 161.106409 96.2976325 1.98361561 0.052074 141 67 SH2241 2241 Phe1 81-92 + 3' flank 81 98 29.509595 137.881456 83.6955255 1.922702241 0.044524 141 68 SH19782 19782 Negative Control 41.497246 186.688856 114.093051 2.057259194 0.135806 141 69 SH3556 3556 Tyr2 tRNA-intron/exon 51 67 151.041036 277.841565 214.4413005 2.331308432 0.42555 141 70 SH17407 17407 YIL069C_9_232366_231550_INTRON_4_412 3' exon 31.628009 192.885877 31.628009 162.257868 96.9429385 1.98651618 0.053081 141 71 SH2738 2738 Pro5 tRNA 71 83 932.524057 983.706688 958.1153725 2.981417808 0.459651 141 72 SH2973 2973 Ser1 3' flank 29.754213 116.811204 73.2827085 1.865001512 0.19536 141 73 SH21268 21268 YPL081W spliced 37.857624 208.200439 123.0290315 2.090007605 -0.168508 141 74 SH14681 14681 MT 21S rRNA 21S rRNA4 29.859869 188.880462 29.859869 160.020593 94.940231 1.977450284 -0.049568 141 75 SH6314 6314 snR42 351 + 3' 351 27.87982 114.2357 71.05776 1.851611513 0.080232 141 76 SH1359 1359 Ile3 3' flank 29.909379 138.394066 84.1517225 1.92506301 0.069973 141 77 SH13768 13768 MT COB intronic 27.89298 187.970665 27.89298 161.077685 94.4853325 1.975364396 -0.196313 141 78 SH9185 9185 snR7 U5 RNA U5 196 212 306.208283 479.738462 392.9733725 2.594363124 0.254794 141 79 SH19295 19295 YPL175W_16_218629_220087_INTRON_18_117 3' exon 29.848415 185.457183 29.848415 156.608768 93.2285915 1.969549123 -0.032905 141 80 SH14512 14512 MT 21S rRNA 21S rRNA3 35.819104 228.358131 35.819104 193.539027 114.6790655 2.059484145 -0.044404 141 81 SH14904 14904 MT tRNA Ile 3' 29.715477 202.098132 29.715477 173.382655 101.549066 2.006675933 -0.130898 141 82 SH7316 7316 snR66 71-86 + 3' 71 27.623119 111.168776 69.3959475 1.84133411 0.083994 141 83 SH6283 6283 snR42 snR42 196 213 39.449488 194.739721 117.0946045 2.068536884 0.00895 141 84 SH21780 21780 copy of SH14230 29.353736 178.481415 103.9175755 2.016689006 -0.183241 141 85 SH13423 13423 MT COX1 intronic 31.157293 191.546754 31.157293 161.389461 96.273377 1.983506206 0.030502 141 86 SH2192 2192 Met2 3' flank 29.011606 165.45891 97.235258 1.987823771 -0.13645 141 87 SH16426 16426 YER074W_5_306319_307192_INTRON_4_469 intron 34.657554 188.584958 34.657554 154.927404 94.792479 1.976773881 0.271049 141 88 SH10550 10550 RUF8 RUF8 676 695 26.713685 126.912556 76.8131205 1.885435408 -0.095071 141 89 SH748 748 Gln4 tRNA 11 28 28.469446 156.180186 92.324816 1.965318451 -0.128848 141 90 SH4211 4211 telomerase RNA telomerase 91 110 26.408875 114.513106 70.4609905 1.847948744 -0.032924 141 91 SH8458 8458 snoRNA cluster 5 snR128 31.985551 176.582037 31.985551 145.596486 88.7910185 1.948369038 0.169672 141 92 SH18543 18543 YMR230W_13_732413_733140_INTRON_53_462 intron 26.197433 162.314625 26.197433 137.117192 81.6573125 1.911995082 -0.199299 141 93 SH1821 1821 Leu8 3' flank 31.799059 141.760585 86.779822 1.938418755 0.179165 141 94 SH18 18 Ala1 5' flank - tRNA 3 5' flank 3 35.536598 181.045902 108.29125 2.034593367 0.083117 141 95 SH16141 16141 YDR092W_4_629869_630598_INTRON_31_298 intron 38.36082 208.383328 38.36082 171.022508 104.691664 2.019912103 0.270837 141 96 SH17545 17545 YJL177W_10_90783_91654_INTRON_310_626 intron 29.873458 177.2308 29.873458 148.357342 89.1154 1.949952761 0.012683 141 97 SH6089 6089 snR37 snR37 361 377 29.884377 135.890588 82.8874825 1.918488949 0.082438 141 98 SH15832 15832 YDL075W_4_322225_322987_INTRON_58_478 intron 31.770603 178.11344 31.770603 147.342837 89.55672 1.952098179 0.14602 141 99 SH7851 7851 snoRNA cluster1 intergenic 26.081725 186.913546 26.081725 161.831821 93.956773 1.972928092 -0.340353 141 100 SH17276 17276 YHR141C_8_382752_381991_INTRON_5_445 exon/intron 56.274701 263.332157 56.274701 208.057456 132.1660785 2.121120004 0.091 141 101 SH8967 8967 snR17a / U3a U3a 121 142 27.800729 162.800307 95.300518 1.979095261 -0.211806 141 102 SH5688 5688 snR34 snR34 361 377 521.449995 977.961344 749.7056695 2.874890795 -0.266218 141 103 SH4166 4166 SRP RNA 3' 48.083814 165.111374 106.597594 2.027747402 0.504899 141 104 SH2842 2842 Pro7 tRNA 16 32 129.661884 244.886165 187.2740245 2.272477544 0.507348 142 2 SH4493 4493 U3b (snR17b) U3b 21 42 29.24168 161.385292 95.313486 1.979154354 -0.099863 142 3 SH1949 1949 Lys2 5' flank 29.261091 147.721365 88.491228 1.946900222 -0.027007 142 4 SH15882 15882 YDL082W_4_308423_309387_INTRON_5_369 intron 37.243026 197.901945 37.243026 161.658919 99.4509725 1.997609034 0.330427 142 5 SH4047 4047 SRP RNA SRP RNA 126 145 29.371062 150.476199 89.9236305 1.953873832 -0.034003 142 6 SH16952 16952 YGR029W_7_543547_544199_INTRON_87_169 5' exon 43.407843 240.930571 43.407843 198.522728 120.9652855 2.082660755 0.022368 142 7 SH2500 2500 Pro1 5' flank - tRNA5 5 1556.259245 1941.817809 1749.038527 3.242799376 0.04289 142 8 SH8174 8174 snoRNA cluster 3; snR70 37.672058 214.360182 37.672058 177.688124 107.680091 2.032135414 0.17738 142 9 SH18114 18114 YLR367W_12_855877_857316_INTRON_698_1180 intron 29.742078 199.827459 29.742078 171.085381 100.4137295 2.001793098 -0.115673 142 10 SH3865 3865 RNaseP RNaseP 291 303 64.017604 238.740145 151.3788745 2.180065272 -0.095116 142 11 SH15605 15605 YBR119W_2_479296_480281_INTRON_9_97 intron 29.739598 177.536033 29.739598 148.796435 89.2680165 1.950695885 0.000969 142 12 SH18278 18278 YML056C_13_164176_162194_INTRON_461_868 intron 29.630511 221.596335 29.630511 192.965824 111.2981675 2.046488014 -0.244975 142 13 SH20151 20151 YDL125C spliced 29.448084 180.065683 104.7568835 2.02018257 -0.186221 142 14 SH12700 12700 MT ORF 8 (hypothetical) ORF8 31.174486 193.226304 31.174486 163.051818 97.113152 1.98727805 0.021122 142 15 SH2517 2517 Pro1 3' flank 32.830992 141.288005 87.0594985 1.939816161 0.248148 142 16 SH11770 11770 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5736 5753 2342.655106 1770.624589 2056.639848 3.313158246 0.726807 142 17 SH19226 19226 YPL090C_16_378390_377286_INTRON_7_400 intron 32.224946 218.804265 32.224946 187.579319 109.9021325 2.041006119 -0.09389 142 18 SH20222 20222 YDR092W spliced 33.89369 190.362734 112.128212 2.049714897 -0.058264 142 19 SH19837 19837 Negative Control 33.725065 192.938523 113.331794 2.054351764 -0.086918 142 20 SH16256 16256 YDR397C_4_1266887_1266355_INTRON_38_129 3' exon 33.642003 201.215865 33.642003 168.573862 101.1079325 2.00478523 0.129684 142 21 SH5551 5551 snR33 snR33 41 62 32.696744 153.715816 93.20628 1.969445175 0.170152 142 22 SH11749 11749 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5631 5644 69.804437 209.169529 139.486983 2.144533681 0.248861 142 23 SH20954 20954 YML024W spliced 80.571567 268.622063 174.596815 2.242036317 -0.128125 142 24 SH19716 19716 Negative Control 30.153733 171.966025 101.059879 2.004578774 -0.095193 142 25 SH3486 3486 Tyr1 5' flank 30.279882 153.260024 91.769953 1.962700509 0.014389 142 26 SH10619 10619 RUF8 3' 30.389442 162.197362 96.293402 1.98359653 -0.02403 142 27 SH9106 9106 snR14 / U4 RNA 146-160 + 3' 146 28.546131 142.252959 85.399545 1.931455557 -0.04971 142 28 SH19663 19663 SIR1 2.2 32.440541 180.516581 106.478561 2.027262173 -0.021139 142 29 SH16561 16561 YER133W_5_432491_433954_INTRON_178_702 intron 28.59158 162.738783 28.59158 135.147203 81.8693915 1.913121562 -0.006426 142 30 SH4899 4899 snR9 5' 2700.57853 4068.874237 3384.726384 3.529523567 -0.392262 142 31 SH880 880 Glu3 5' flank 30.419172 156.246456 93.332814 1.97003436 0.00828 142 32 SH14787 14787 MT ORF11; tRNA Leu; tRNA Gln 3' 30.323134 201.842448 30.323134 172.519314 101.421224 2.006128848 -0.087984 142 33 SH7434 7434 snR69 snR69 71 88 37.840534 165.867221 101.8538775 2.007977567 0.306128 142 34 SH7038 7038 snR62 5' 31.967197 193.939179 112.953188 2.052898493 -0.159774 142 35 SH16252 16252 YDR397C_4_1266887_1266355_INTRON_38_129 intron 33.708897 204.99884 33.708897 172.289943 102.99942 2.012834779 0.103515 142 36 SH9072 9072 snR14 / U4 RNA 5' 82.778127 212.97241 147.8752685 2.169895546 0.356706 142 37 SH7187 7187 snR64 snR64 1 17 6717.463907 11182.00869 8949.736296 3.951810239 -0.816327 142 38 SH13415 13415 MT COX1 intronic 31.462823 185.161527 31.462823 154.698704 93.0807635 1.968859937 0.086352 142 39 SH14941 14941 MT tRNA Asn 3' 31.411525 208.532995 31.411525 178.12147 104.7664975 2.020222425 -0.05453 142 40 SH128 128 Arg1 16-28 16 28 48.233556 203.729565 125.9815605 2.100306984 0.030747 142 41 SH813 813 Glu1 3' flank 31.431453 166.459085 98.945269 1.995395034 0.015455 142 42 SH7605 7605 snR189 snR189 96 113 27.752038 138.357425 83.0547315 1.919364379 -0.087488 142 43 SH11524 11524 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4506 4525 37.206025 151.213673 94.209849 1.974096308 0.428342 142 44 SH10364 10364 RUF7 RUF7 431 450 27.900374 167.220372 97.560373 1.989273452 -0.226082 142 45 SH20590 20590 YHR021C spliced 26.089178 123.02642 74.557799 1.872493079 -0.117782 142 46 SH18521 18521 YMR225C_13_721402_720959_INTRON_59_205 exon/intron 202.182341 604.538387 202.182341 403.356046 302.7691935 2.481111684 0.068469 142 47 SH11158 11158 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S/ITS1 2676 2693 2532.753139 2530.838746 2531.795943 3.4034287 0.271011 142 48 SH15313 15313 YAL003W_1_142172_143158_INTRON_81_446 intron 29.041829 163.094914 29.041829 135.053085 82.047457 1.914065125 0.027025 142 49 SH14978 14978 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.007956 201.412191 30.007956 172.404235 101.2060955 2.00520667 -0.106838 142 50 SH1919 1919 Lys1 tRNA 51 63 39.529928 186.888104 113.209016 2.053881016 0.101497 142 51 SH11328 11328 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3526 3541 38135.9516 30682.04431 34408.99796 4.536672025 -0.171381 142 52 SH3792 3792 RNaseP 5' flank 33.982042 148.833694 91.407868 1.96098358 0.275022 142 53 SH737 737 Gln4 5' flank 32.210867 151.844402 92.0276345 1.963918259 0.150202 142 54 SH13034 13034 MT COX1 COX1ai2 30.46382 209.695981 30.46382 180.232161 105.3479905 2.022626256 -0.123768 142 55 SH9951 9951 RUF5-1 RUF5-1 561 578 30.657719 176.847817 103.752768 2.015999692 -0.092647 142 56 SH2401 2401 Phe4 tRNA 56 70 847.464588 981.709636 914.587112 2.961225077 0.341209 142 57 SH15648 15648 YBR189W_2_604466_605466_INTRON_8_420 intron 34.980494 188.245549 34.980494 154.265055 94.6227745 1.975995678 0.29274 142 58 SH17910 17910 YLR061W_12_263195_263949_INTRON_13_401 intron 33.197441 179.741877 33.197441 147.544436 90.3709385 1.956028792 0.236083 142 59 SH2718 2718 Pro5 5' flank 31.355452 156.718999 94.0372255 1.973299807 0.068747 142 60 SH7281 7281 snR65 3' 41.379948 193.101593 117.2407705 2.069078664 0.056927 142 61 SH16266 16266 YDR447C_4_1355542_1354818_INTRON_4_317 5' exon 47.422355 257.518092 47.422355 211.095737 129.259046 2.111460946 -0.059885 142 62 SH12979 12979 MT COX1 COX1ai2 29.508332 182.102018 29.508332 153.593686 91.551009 1.961663135 -0.040938 142 63 SH3537 3537 Tyr2 5' flank 33.472169 170.40312 101.9376445 2.008334594 0.109257 142 64 SH8039 8039 snoRNA cluster 2 intergenic 33.447849 226.763255 33.447849 194.315406 113.8816275 2.056453665 -0.108806 142 65 SH613 613 Gln1 3' flank 27.470851 134.757902 81.1143765 1.909097834 -0.087299 142 66 SH20817 20817 YKL190W spliced 29.441691 173.45203 101.4468605 2.006238611 -0.148608 142 67 SH16262 16262 YDR424C_4_1319830_1319376_INTRON_26_121 intron 31.427682 210.17302 31.427682 179.745338 105.58651 2.023608435 -0.062789 142 68 SH9915 9915 RUF5-1 RUF5-1 381 402 31.447724 158.678797 95.0632605 1.978012706 0.064777 142 69 SH12607 12607 MT_15S MT_15S 41.442942 246.980799 41.442942 206.537857 123.9903995 2.093388059 -0.095882 142 70 SH10395 10395 RUF8 5' 33.530424 181.843867 107.6871455 2.032163865 0.006084 142 71 SH4598 4598 snR3 5' 114.623194 321.802275 218.2127345 2.338880092 -0.130316 142 72 SH11962 11962 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6696 6709 146.554419 372.290599 259.422509 2.414007655 -0.143045 142 73 SH3158 3158 Ser5 5' flank 31.735431 174.175147 102.955289 2.012648662 -0.012589 142 74 SH18108 18108 YLR367W_12_855877_857316_INTRON_698_1180 intron 31.795132 187.637147 31.795132 156.842015 94.3185735 1.974597224 0.09701 142 75 SH14795 14795 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys 31.842984 192.377862 31.842984 161.534878 96.688931 1.985376759 0.070281 142 76 SH9570 9570 RUF3 RUF3 236 257 31.875585 151.63516 91.7553725 1.962631503 0.129604 142 77 SH12746 12746 MT COX1 COX1ai1 31.891021 212.903813 31.891021 182.012792 106.9519065 2.029188531 -0.055533 142 78 SH12610 12610 MT_15S MT_15S 33.903097 194.394259 33.903097 161.491162 97.6971295 1.989881804 0.187747 142 79 SH11309 11309 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2/25S 3431 3450 31.867385 155.686759 93.777072 1.972096669 0.107709 142 80 SH3223 3223 Thr1 5' flank 27.809706 160.112247 93.9609765 1.972947522 -0.197649 142 81 SH21379 21379 Lys3_4 spliced 34.776772 167.54352 101.160146 2.005009447 0.188016 142 82 SH21518 21518 copy of SH3113 29.682464 141.727271 85.7048675 1.933005488 0.035387 142 83 SH21725 21725 copy of SH11920 286.327728 480.847709 383.5877185 2.583864694 0.170302 142 84 SH10294 10294 RUF7 RUF7 81 98 31.443959 183.213982 107.3289705 2.030716964 -0.083545 142 85 SH3095 3095 Ser3 3' flank 31.289696 194.352834 112.821265 2.052390965 -0.189031 142 86 SH537 537 Cys1 5' flank - tRNA3 5' flank 3 31.116041 190.489442 110.8027415 2.044550506 -0.161816 142 87 SH2213 2213 Phe1 5' flank 30.928183 173.802647 102.365415 2.010153251 -0.058581 142 88 SH11883 11883 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6301 6319 117.27189 275.116657 196.1942735 2.292686327 0.187373 142 89 SH8770 8770 LSR1 / U2 RNA U2 491 503 147.098993 301.428047 224.26352 2.350758634 0.247352 142 90 SH334 334 Arg5 tRNA 6 18 61.130956 223.392469 142.2617125 2.153088032 0.004503 142 91 SH7971 7971 snoRNA cluster 2 5'/snR57 33.993627 210.893654 33.993627 177.900027 105.946827 2.025087955 0.05952 142 92 SH15726 15726 YBR255C-A_2_727032_726576_INTRON_64_157 3' exon 33.831442 202.217969 33.831442 169.386527 101.6089845 2.006932111 0.135295 142 93 SH174 174 Arg2 5' flank - tRNA3 5' flank 3 29.925794 139.368396 84.647095 1.927612058 0.065661 142 94 SH12275 12275 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.397304 244.619432 37.397304 208.222128 122.809716 2.089232727 -0.176089 142 95 SH6561 6561 snR47 5' 33.576514 156.426189 95.0013515 1.977729784 0.202028 142 96 SH14708 14708 MT tRNA thr2 3' 29.796092 189.326255 29.796092 160.530163 95.1631275 1.978468707 -0.056581 142 97 SH5287 5287 snR30 snR30 286 298 54.339944 210.120337 132.2301405 2.121330459 0.04391 142 98 SH14818 14818 "MT tRNAs (Lys, Arg1, Gly)" intergenic 27.910041 178.449093 27.910041 151.539052 89.7245465 1.952911272 -0.14645 142 99 SH10949 10949 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1631 1653 108.988799 242.785248 175.8870235 2.245233799 0.353638 142 100 SH19276 19276 YPL143W_16_282121_282969_INTRON_20_544 intron 29.717473 193.283335 29.717473 164.565862 97.1416675 1.987405554 -0.082177 142 101 SH572 572 Gln1 5' flank 29.628338 164.490916 97.059627 1.987038618 -0.088043 142 102 SH4658 4658 snR3 3' 25.76297 109.59769 67.68033 1.830462468 -0.046952 142 103 SH19060 19060 YOR234C_15_779404_778554_INTRON_20_546 3' exon 59.363822 280.735922 59.363822 222.3721 140.867961 2.148812228 -0.009938 142 104 SH3762 3762 Val4 tRNA 36 50 83.678776 238.608721 161.1437485 2.207213462 0.139052 143 2 SH4552 4552 U3b (snR17b) U3b 316 333 29.35705 158.219846 93.788448 1.972149349 -0.075644 143 3 SH21484 21484 copy of SH1850 39.328676 175.507178 107.417927 2.031076767 0.234724 143 4 SH1852 1852 Leu9 tRNA 1 13 32542.18074 33184.77259 32863.47666 4.516713506 -0.501755 143 5 SH16902 16902 YGL226C-A_7_73156_72747_INTRON_22_170 3' exon 37.392791 212.349049 37.392791 175.956258 106.6745245 2.028060716 0.192228 143 6 SH8521 8521 snR19 / U1 RNA U1 101 120 35.4739 166.776333 101.1251165 2.004859035 0.219537 143 7 SH11479 11479 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4281 4296 63.632543 223.762872 143.6977075 2.15744984 0.033774 143 8 SH11665 11665 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5211 5224 29.647204 156.771608 93.209406 1.96945974 -0.047784 143 9 SH3611 3611 Val1 tRNA 51 65 29.695778 175.533428 102.614603 2.011209169 -0.144663 143 10 SH6393 6393 snR43 206-209 + 3' 206 29.699294 140.179165 84.9392295 1.929108317 0.04514 143 11 SH10315 10315 RUF7 RUF7 186 204 29.64054 145.443592 87.542066 1.942216792 0.012239 143 12 SH18190 18190 YML024W_13_225889_226697_INTRON_4_401 intron 29.510917 219.684422 29.510917 191.173505 110.342211 2.042741682 -0.243054 143 13 SH5698 5698 snR34 snR34 411 426 30.300667 146.266397 88.283532 1.9458797 0.053649 143 14 SH14059 14059 MT COB Cytbi4 29.063208 183.791215 29.063208 155.728007 92.3956075 1.965651325 -0.083661 143 15 SH14247 14247 MT tRNA Ser tRNA/3' 30.723209 209.526785 30.723209 179.803576 105.2633925 2.022277363 -0.105499 143 16 SH10149 10149 RUF6 RUF6 591 614 30.425331 166.016983 98.221157 1.992205046 -0.04266 143 17 SH8604 8604 snR19 / U1 RNA U1 516 531 62.661051 240.959865 151.810458 2.181301691 -0.132042 143 18 SH15842 15842 YDL075W_4_322225_322987_INTRON_58_478 intron 29.944152 213.138802 29.944152 184.19465 107.069401 2.029665373 -0.178027 143 19 SH13714 13714 MT tRNAGlu (and 5' processing site for COB) 3' 29.801836 187.687335 29.801836 158.885499 94.3436675 1.974712755 -0.047838 143 20 SH5829 5829 snR35 snR35 331 347 135.839377 308.711821 222.275599 2.346891789 0.120808 143 21 SH9265 9265 RUF1 5' 31.625193 187.739425 109.682309 2.040136585 -0.117835 143 22 SH2085 2085 Lys4 91-96 + 3' flank 91 108 26.055401 131.279406 78.6674035 1.895794816 -0.174422 143 23 SH17445 17445 YIL148W_9_68708_69528_INTRON_9_442 5' exon 31.827478 194.297935 31.827478 163.470457 97.6489675 1.989667656 0.057269 143 24 SH8282 8282 snoRNA cluster4 intergenic 30.079029 211.736955 30.079029 182.657926 106.3684775 2.026812943 -0.161114 143 25 SH16980 16980 YGR034W_7_555923_556666_INTRON_20_496 intron 28.316871 174.350795 28.316871 147.033924 87.6753975 1.942877744 -0.092453 143 26 SH4489 4489 U3b (snR17b) U3b 1 15 30.35532 169.978746 100.167033 2.00072481 -0.070928 143 27 SH1226 1226 Ile1 3' flank 28.533204 144.683688 86.608446 1.937560246 -0.063867 143 28 SH12879 12879 MT COX1 COX1ai1 28.591277 202.90678 28.591277 175.315503 101.95339 2.008401671 -0.214257 143 29 SH21254 21254 YPL075W spliced 34.397049 191.694656 113.0458525 2.053254633 -0.05237 143 30 SH5991 5991 snR36 3' 38.232468 161.589936 99.911202 1.999614184 0.362557 143 31 SH13109 13109 MT COX1 COX1ai3 30.452597 188.134631 30.452597 158.682034 94.5673155 1.975741061 -0.001971 143 32 SH1570 1570 Leu4 tRNA 21 35 30.355153 168.614506 99.4848295 1.99775686 -0.062751 143 33 SH16094 16094 YDR025W_4_491510_492319_INTRON_46_384 3' exon 39.787361 225.190725 39.787361 186.403364 113.0953625 2.053444797 0.111746 143 34 SH10911 10911 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1441 1454 2186.329463 3444.805599 2815.567531 3.449565948 -0.406428 143 35 SH13908 13908 MT COB Cytbi3 28.042858 177.776029 28.042858 150.733171 89.3880145 1.951279291 -0.132296 143 36 SH19092 19092 YOR312C_15_901173_900242_INTRON_2_427 intron 31.666728 223.375157 31.666728 192.708429 112.1875785 2.049944774 -0.160344 143 37 SH13851 13851 MT COB Cytbi2 29.657647 173.350679 29.657647 144.693032 87.1753395 1.940393647 0.017486 143 38 SH4542 4542 U3b (snR17b) U3b 266 280 35.162301 157.412087 96.287194 1.983568531 0.281913 143 39 SH11730 11730 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5536 5553 522.368 729.960731 626.1643655 2.796688349 0.213302 143 40 SH7382 7382 snR68 131-136 + 3' 131 33.19236 156.975922 95.084141 1.978108087 0.176953 143 41 SH18359 18359 YMR033W_13_337787_339276_INTRON_31_116 intron 31.337986 167.255536 31.337986 136.91755 84.127768 1.924939367 0.1766 143 42 SH1393 1393 Leu1 tRNA-exon/intron 36 53 29.510141 172.970369 101.240255 2.00535323 -0.141441 143 43 SH14479 14479 MT 21S rRNA 21S rRNA3 59.537034 297.558228 59.537034 239.021194 149.279114 2.173999049 -0.157019 143 44 SH12114 12114 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7456 7473 150.120384 401.51909 275.819737 2.44062534 -0.253839 143 45 SH9707 9707 RUF4 RUF4 311 323 27.797345 162.329417 95.063381 1.978013256 -0.209712 143 46 SH3660 3660 Val2 tRNA 41 53 31.590349 152.22921 91.9097795 1.963361724 0.107783 143 47 SH19365 19365 YPR028W_16_623522_624197_INTRON_52_184 intron 41.034485 257.197054 41.034485 217.162569 129.098527 2.110921287 -0.215636 143 48 SH18501 18501 YMR194W_13_651144_651909_INTRON_17_479 intron 44.843497 283.558148 44.843497 239.714651 142.279074 2.15314103 -0.37776 143 49 SH13180 13180 MT COX1 Exon4 35.449883 236.236719 35.449883 201.786836 118.6183595 2.074151913 -0.142624 143 50 SH15633 15633 YBR186W_2_600511_602318_INTRON_1552_1664 5' exon 31.727615 191.220466 31.727615 160.492851 96.110233 1.98276963 0.070071 143 51 SH13091 13091 MT COX1 COX1ai3 31.80152 191.959831 31.80152 161.158311 96.4799155 1.984436914 0.070217 143 52 SH13085 13085 MT COX1 COX1ai3 30.018121 171.450942 30.018121 142.432821 86.225471 1.935635575 0.055199 143 53 SH7709 7709 snoRNA cluster1 snR77 37.788008 228.165417 37.788008 191.377409 114.5827085 2.059119084 0.017916 143 54 SH856 856 Glu2 tRNA 46 58 44.736154 173.307064 109.021609 2.037512587 0.350882 143 55 SH4050 4050 SRP RNA SRP RNA 141 155 34.401618 171.733135 103.0673765 2.013121222 0.133346 143 56 SH1615 1615 Leu5 5' flank 30.7515 191.259821 111.0056605 2.045345125 -0.182744 143 57 SH14234 14234 MT ATP9 3' 30.948811 195.162192 30.948811 165.213381 98.081096 1.99158531 -0.005841 143 58 SH19441 19441 YPR187W_16_911252_911795_INTRON_21_96 intron 29.155763 157.960217 29.155763 129.804454 79.4801085 1.900258451 0.066164 143 59 SH16181 16181 YDR367W_4_1212837_1213603_INTRON_31_131 5' exon 31.252879 192.521336 31.252879 162.268457 96.760668 1.985698858 0.03071 143 60 SH2411 2411 Phe4 3' flank 29.36597 127.045793 78.2058815 1.893239416 0.098742 143 61 SH16090 16090 YDR025W_4_491510_492319_INTRON_46_384 intron 29.413099 185.782733 29.413099 157.369634 93.3913665 1.97030673 -0.067321 143 62 SH14935 14935 MT tRNA Asn tRNA 39.351519 208.875722 39.351519 170.524203 104.937861 2.020932208 0.297865 143 63 SH18891 18891 YOL120C_15_94401_93394_INTRON_113_559 5' exon 31.401777 187.64109 31.401777 157.239313 94.320545 1.974606302 0.069125 143 64 SH3722 3722 Val3 3' flank 29.399103 155.765991 92.582547 1.966529124 -0.060011 143 65 SH18737 18737 YNL162W_14_331319_332151_INTRON_5_516 intron 31.354611 196.567378 31.354611 166.212767 98.783689 1.994685241 0.012384 143 66 SH21111 21111 YNL069C spliced 33.315104 164.192049 98.7535765 1.994552833 0.138189 143 67 SH11460 11460 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4186 4201 36.27986 179.448979 107.8644195 2.032878211 0.122864 143 68 SH333 333 Arg5 tRNA 1 13 37.284643 177.428626 107.3566345 2.030828888 0.17325 143 69 SH2708 2708 Pro5 5' flank 29.391174 157.609646 93.50041 1.970813515 -0.070103 143 70 SH16686 16686 YGL030W_7_439087_439634_INTRON_4_233 intron 33.403695 184.002943 33.403695 151.599248 92.5014715 1.966148641 0.224227 143 71 SH19224 19224 YPL090C_16_378390_377286_INTRON_7_400 exon/intron 30.486173 200.48083 30.486173 170.994657 100.740415 2.003203736 -0.068941 143 72 SH15909 15909 YDL083C_4_307788_306925_INTRON_25_456 intron 29.558655 172.948836 29.558655 144.390181 86.974418 1.939391531 0.012077 143 73 SH5062 5062 snR11 5' 33.622911 172.651404 103.1371575 2.013415158 0.096919 143 74 SH1316 1316 Ile3 5' flank 27.695794 172.702671 100.1992325 2.000864395 -0.267487 143 75 SH1141 1141 His1 5' flank 30.758616 192.080073 111.4193445 2.046960599 -0.189689 143 76 SH19958 19958 YBL059C-A spliced 29.805626 128.238769 79.0221975 1.897749103 0.122046 143 77 SH15253 15253 MT tRNA fMet 3' 27.831725 185.992671 27.831725 159.160946 93.4963355 1.970794589 -0.191179 143 78 SH1080 1080 Gly3 3' flank 33.88699 165.579654 99.733322 1.998840285 0.161457 143 79 SH9344 9344 RUF1 RUF1 296 312 33.890114 177.618091 105.7541025 2.024297224 0.058543 143 80 SH21333 21333 YPR063C spliced 31.860031 166.477292 99.1686615 1.996374452 0.040662 143 81 SH13173 13173 MT COX1 Exon4 29.814159 179.953054 29.814159 151.138895 90.476527 1.956535922 -0.006489 143 82 SH21644 21644 copy of SH8559 29.759234 162.718926 96.23908 1.983351463 -0.07012 143 83 SH18422 18422 YMR133W_13_536206_537608_INTRON_1243_1358 intron/exon 41.701298 236.526024 41.701298 195.824726 118.763012 2.074681203 0.029568 143 84 SH8637 8637 snR19 / U1 RNA 3' 27.593262 118.371879 72.9825705 1.863219155 0.029346 143 85 SH17391 17391 YIL069C_9_232366_231550_INTRON_4_412 intron 31.451289 216.741971 31.451289 186.290682 108.8709855 2.036912154 -0.111368 143 86 SH18498 18498 YMR194W_13_651144_651909_INTRON_17_479 intron 31.301559 209.344851 31.301559 179.043292 105.1724255 2.02190189 -0.06633 143 87 SH19167 19167 YPL079W_16_406631_407534_INTRON_12_432 5' exon 48.866155 259.937928 48.866155 212.071773 130.468964 2.115507214 -0.049404 143 88 SH16610 16610 YFL034C-B_6_63992_63015_INTRON_21_134 intron 28.98988 179.906314 28.98988 151.916434 90.453157 1.956423729 -0.06883 143 89 SH3736 3736 Val4 5' flank 32.683613 161.834119 97.258866 1.987929202 0.117111 143 90 SH15562 15562 YBR084C-A_2_415219_414144_INTRON_3_508 5' exon 28.608842 168.720504 28.608842 141.111662 84.860252 1.928704317 -0.03881 143 91 SH4172 4172 SRP RNA 3' 36.085508 150.985421 93.5354645 1.970976307 0.372712 143 92 SH6992 6992 snR60 snR60 41 58 33.960995 182.058349 108.009672 2.033462647 0.01938 143 93 SH6061 6061 snR37 snR37 221 240 29.997788 166.656323 98.3270555 1.992673034 -0.073021 143 94 SH17913 17913 YLR061W_12_263195_263949_INTRON_13_401 intron 31.768062 198.992157 31.768062 168.224095 99.9960785 1.999982969 0.024653 143 95 SH10928 10928 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1526 1539 35.454802 166.937504 101.196153 2.005164003 0.217262 143 96 SH21224 21224 YOR182C spliced 33.525882 183.061817 108.2938495 2.034603792 -0.005342 143 97 SH15532 15532 YBR078W_2_393082_394818_INTRON_59_388 5' exon 29.749796 199.836584 29.749796 171.086788 100.418292 2.00181283 -0.115196 143 98 SH10808 10808 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 926 944 8126.571461 3529.475215 5828.023338 3.765521282 1.264855 143 99 SH18055 18055 YLR333C_12_796335_795573_INTRON_1_423 intron 31.609531 214.898827 31.609531 184.289296 107.9494135 2.033220287 -0.087129 143 100 SH11149 11149 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2631 2650 31713.24455 21751.85925 26732.5519 4.427040419 0.135463 143 101 SH2485 2485 Pro1 5' flank 33.38189 198.176155 115.7790225 2.063629879 -0.145825 143 102 SH13081 13081 MT COX1 COX1ai3 31.398021 197.54769 31.398021 167.149669 99.273845 1.996834843 0.00926 143 103 SH5409 5409 snR31 snR31 111 132 33.12756 158.126488 95.627024 1.98058064 0.16588 143 104 SH89 89 Ala2 3' flank 27.360518 132.23507 79.797794 1.901990886 -0.079913 144 2 SH13386 13386 MT COX1 Exon 5b 31.526539 215.747844 31.526539 185.221305 108.373922 2.034924791 -0.098791 144 3 SH11307 11307 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3421 3438 29.509909 167.119529 98.314719 1.992618542 -0.109198 144 4 SH17748 17748 YKL157W_11_154993_158183_INTRON_282_664 intron 33.512036 195.46579 33.512036 162.953754 98.232895 1.992256943 0.156899 144 5 SH10028 10028 RUF6 5' - 1 -14 1 33.53655 152.033768 92.785159 1.967478516 0.228739 144 6 SH13142 13142 MT COX1 intronic 29.585893 179.487275 29.585893 150.901382 90.2436375 1.955416592 -0.021165 144 7 SH7531 7531 snR79 5' - 17 -4 17 79.896424 221.533975 150.7151995 2.178157053 0.246511 144 8 SH5369 5369 snR31 5' 41.69526 202.672407 122.1838335 2.087013747 -0.049065 144 9 SH13088 13088 MT COX1 COX1ai3 29.688703 209.309564 29.688703 180.620861 105.154782 2.021829027 -0.174136 144 10 SH12596 12596 MT_15S MT_15S 29.657117 200.166066 29.657117 171.508949 100.583033 2.002524727 -0.123533 144 11 SH12919 12919 MT COX1 COX1ai2 36.541586 219.769632 36.541586 184.228046 110.384816 2.042909338 0.077106 144 12 SH7052 7052 snR62 snR62 51 70 31.387457 182.143897 106.765677 2.028431658 -0.078652 144 13 SH2482 2482 Pro1 5' flank 31.152134 152.89698 92.024557 1.963903735 0.075247 144 14 SH13274 13274 MT COX1 Exon 5a 28.919677 164.333276 28.919677 136.413599 82.666638 1.917330276 0.010336 144 15 SH14732 14732 MT tRNA cys; tRNA his tRNA his 36.35316 206.928059 36.35316 171.574899 103.9640295 2.016883104 0.201 144 16 SH15786 15786 YDL029W_4_399336_400634_INTRON_23_145 intron 32.169154 214.902465 32.169154 183.733311 107.9512325 2.033227605 -0.061007 144 17 SH18534 18534 YMR230W_13_732413_733140_INTRON_53_462 intron 29.990966 176.11535 29.990966 147.124384 88.557675 1.947226206 0.027591 144 18 SH13272 13272 MT COX1 Exon 5a 31.66222 183.611154 31.66222 152.948934 92.305577 1.965227941 0.108678 144 19 SH11871 11871 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6241 6258 13544.68633 10878.52448 12211.6054 4.086772762 0.134918 144 20 SH11688 11688 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5326 5344 20120.12675 16987.8198 18553.97328 4.268436927 -0.061554 144 21 SH9376 9376 RUF1 RUF1 456 472 38.022853 191.166387 114.59462 2.059164229 0.024702 144 22 SH10145 10145 RUF6 RUF6 571 588 31.554736 185.059666 108.307201 2.034657332 -0.096246 144 23 SH9136 9136 snR7 U5 RNA 5' 31.688499 158.691303 95.189901 1.978590875 0.079235 144 24 SH3363 3363 Thr4 5' flank 31.85006 149.161112 90.505586 1.956675385 0.141268 144 25 SH17716 17716 YKL081W_11_282533_284097_INTRON_206_531 intron 33.920749 206.008391 33.920749 173.087642 103.5041955 2.014957954 0.103225 144 26 SH18769 18769 YNL246W_14_185459_186348_INTRON_33_127 intron 32.169712 219.68151 32.169712 188.511798 110.340755 2.042735951 -0.104312 144 27 SH2796 2796 Pro6 tRNA 71 83 125.417192 341.419666 233.418429 2.368135142 -0.148177 144 28 SH18295 18295 YML073C_13_124172_123227_INTRON_16_430 intron 38.152206 211.13062 38.152206 173.978414 106.06531 2.025573366 0.232291 144 29 SH9525 9525 RUF3 RUF3 11 27 34.336959 171.700466 103.0187125 2.012916118 0.131413 144 30 SH1727 1727 Leu7 5' flank 36.252569 196.510494 116.3815315 2.065884068 -0.069077 144 31 SH7856 7856 snoRNA cluster1 intergenic 32.341782 232.117206 32.341782 200.775424 116.558603 2.066544334 -0.204276 144 32 SH7577 7577 snR189 5' 32.243813 168.285514 100.2646635 2.001147901 0.05207 144 33 SH18711 18711 YNL130C_14_381156_379555_INTRON_30_470 intron 30.203933 184.190312 30.203933 154.986379 92.595156 1.966588268 0.000103 144 34 SH17290 17290 YHR141C_8_382752_381991_INTRON_5_445 intron 31.007076 210.700459 31.007076 180.693383 105.8502295 2.024691804 -0.093321 144 35 SH15267 15267 MT 9S rRNA 9S 26.128655 155.300507 26.128655 130.171852 78.1502535 1.892930391 -0.161627 144 36 SH16833 16833 YGL178W_7_167356_170575_INTRON_4_643 intron 41.041465 201.077136 41.041465 161.035671 101.038568 2.004487182 0.452301 144 37 SH12371 12371 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.359873 215.902943 33.359873 183.54307 108.4514715 2.035235449 -0.015719 144 38 SH3328 3328 Thr3 5' flank - tRNA3 3 31.37575 141.332433 86.3540915 1.936282919 0.153804 144 39 SH6705 6705 snR49 snR49 51 67 36.882982 176.691512 106.787247 2.02851939 0.168747 144 40 SH1146 1146 His1 5' flank 31.258418 154.96192 93.110169 1.968997115 0.071448 144 41 SH14723 14723 MT tRNA cys; tRNA his tRNA Cys / intergenic 29.393473 214.21932 29.393473 185.825847 107.60966 2.031851259 -0.221683 144 42 SH6991 6991 snR60 snR60 36 53 34.982454 179.119879 107.0511665 2.029591404 0.082338 144 43 SH5868 5868 snR35 526-540 + 3' 526 33.154885 190.726536 111.9407105 2.048988059 -0.087887 144 44 SH16754 16754 YGL076C_7_365994_364333_INTRON_565_1032 intron/exon 31.330441 186.611985 31.330441 156.281544 93.8059925 1.972230583 0.069355 144 45 SH15544 15544 YBR078W_2_393082_394818_INTRON_59_388 intron 29.501743 172.02888 29.501743 143.527137 86.51444 1.937088601 0.01269 144 46 SH10669 10669 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 231 248 35.128203 169.844998 102.4866005 2.010667088 0.177039 144 47 SH3268 3268 Thr2 5' flank 31.421895 187.379269 109.400582 2.039019632 -0.12232 144 48 SH17360 17360 YIL052C_9_257061_256224_INTRON_38_509 intron 29.583014 182.645353 29.583014 154.062339 91.8226765 1.962949948 -0.03816 144 49 SH21282 21282 YPL143W spliced 38.986218 204.730001 121.8581095 2.085854436 -0.112466 144 50 SH10822 10822 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 996 1016 146.730595 325.180134 235.9553645 2.372829856 0.105206 144 51 SH12573 12573 MT_15S MT_15S 33.5321 176.754638 33.5321 144.222538 88.877319 1.948790946 0.275346 144 52 SH14934 14934 MT tRNA Asn tRNA 50.713967 244.568496 50.713967 194.854529 122.784248 2.089142655 0.162826 144 53 SH12077 12077 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7271 7293 31.950426 187.138624 109.544525 2.039590677 -0.100169 144 54 SH17324 17324 YIL004C_9_348502_347943_INTRON_12_142 intron 39.795995 245.689049 39.795995 206.893054 123.3445245 2.091119875 -0.124146 144 55 SH14863 14863 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 30.440312 220.997226 30.440312 191.556914 110.998613 2.045317552 -0.197548 144 56 SH1960 1960 Lys2 tRNA 1 13 36.452601 169.616315 103.034458 2.012982491 0.223646 144 57 SH4368 4368 telomerase RNA telomerase 876 894 32.782494 214.653196 123.717845 2.092432347 -0.332587 144 58 SH9219 9219 snR6 / U6 RNA 5' 29.044574 172.034398 100.539486 2.002336661 -0.165664 144 59 SH21176 21176 YNR053C spliced 33.097488 179.109613 106.1035505 2.025729917 0.016082 144 60 SH5400 5400 snR31 snR31 66 80 91.783529 254.020023 172.901776 2.237799454 0.102488 144 61 SH20599 20599 YHR041C spliced 41.163985 194.720713 117.942349 2.071669773 0.034705 144 62 SH13287 13287 MT COX1 Exon 5a 29.322875 194.104948 29.322875 165.782073 97.552474 1.989238288 -0.115883 144 63 SH14643 14643 MT 21S rRNA intronic 29.318411 176.879668 29.318411 148.561257 88.939834 1.949096315 -0.027352 144 64 SH2454 2454 Phe5 tRNA-intron/exon 41 57 33.2477 191.999902 112.623801 2.05163018 -0.095767 144 65 SH17171 17171 YHR021C_8_148660_147862_INTRON_4_553 5' exon 51.025613 249.364179 51.025613 199.338566 125.1820895 2.097542196 0.116419 144 66 SH6454 6454 snR45 snR45 116 135 31.223527 141.368556 86.2960415 1.935990875 0.143504 144 67 SH13069 13069 MT COX1 intronic / exon3 46.022 226.954047 46.022 181.932047 113.9770235 2.056817311 0.256899 144 68 SH20588 20588 YHR021C spliced 33.187421 169.044167 101.115794 2.004818996 0.101422 144 69 SH17126 17126 YHR010W_8_126513_127484_INTRON_32_592 intron 31.239331 206.069434 31.239331 175.830103 103.534717 2.015086001 -0.051651 144 70 SH13095 13095 MT COX1 COX1ai3 33.25855 207.185465 33.25855 174.926915 104.0927325 2.017420409 0.061771 144 71 SH7006 7006 snR60 3' 33.323425 207.858154 120.5907895 2.081314138 -0.25095 144 72 SH7425 7425 snR69 snR69 26 43 37.376293 188.852107 113.1142 2.053517128 0.039095 144 73 SH20851 20851 YLR061W spliced 43.459795 201.056868 122.2583315 2.087278465 -0.00577 144 74 SH5742 5742 snR34 3' 31.588268 157.539465 94.5638665 1.975725221 0.079869 144 75 SH12497 12497 MT_tRNA Pro tRNA 53.73956 287.051304 53.73956 234.311744 144.025652 2.15843985 -0.196696 144 76 SH424 424 Asp1 5' flank 31.746562 174.441301 103.0939315 2.013233102 -0.013485 144 77 SH15308 15308 YAL001C_1_151163_147591_INTRON_71_160 intron/exon 31.808861 213.867871 31.808861 183.05901 107.4339355 2.031141485 -0.068295 144 78 SH7107 7107 snR63 snR63 41 59 31.855194 194.333529 113.0943615 2.053440953 -0.167407 144 79 SH19179 19179 YPL079W_16_406631_407534_INTRON_12_432 intron 27.859256 185.316433 27.859256 158.457177 93.1582165 1.969221165 -0.185537 144 80 SH19957 19957 YBL059C-A spliced 29.87838 152.59337 91.235875 1.960165642 -0.009782 144 81 SH14498 14498 MT 21S rRNA 21S rRNA3 181.405069 564.352066 181.405069 383.946997 282.676033 2.451288988 0.034209 144 82 SH14036 14036 MT COB Cytbi4 31.846252 193.606546 31.846252 162.760294 97.303273 1.988127449 0.062795 144 83 SH5297 5297 snR30 snR30 336 353 29.785684 156.613816 93.19975 1.969414747 -0.037298 144 84 SH15249 15249 MT tRNA fMet tRNA / 3' 27.714909 178.739437 27.714909 152.024528 89.8697185 1.953613381 -0.163719 144 85 SH18308 18308 YML073C_13_124172_123227_INTRON_16_430 intron 31.620558 210.425509 31.620558 179.804951 105.7127545 2.024127389 -0.051689 144 86 SH9386 9386 RUF1 RUF1 506 523 33.489275 188.666363 111.077819 2.045627344 -0.057539 144 87 SH8761 8761 LSR1 / U2 RNA U2 446 461 535.321808 688.799377 612.0605925 2.786794418 0.338849 144 88 SH9672 9672 RUF4 RUF4 136 153 31.179702 162.049928 96.614815 1.985043727 0.027697 144 89 SH8869 8869 LSR1 / U2 RNA U2 986 1002 32.937506 183.304 108.120753 2.033909062 -0.028784 144 90 SH18627 18627 YNL096C_14_444312_443395_INTRON_145_489 intron 28.821957 190.650791 28.821957 162.828834 95.8253955 1.98148062 -0.137081 144 91 SH10192 10192 RUF6 RUF6 806 822 30.538028 173.916668 102.227348 2.009567094 -0.082979 144 92 SH15808 15808 YDL061C_4_341182_340627_INTRON_1_408 intron 30.320154 212.660657 30.320154 183.340503 106.8303285 2.028694564 -0.149977 144 93 SH7070 7070 snR62 3' 32.028224 190.460171 111.2441975 2.046277367 -0.126944 144 94 SH19779 19779 Negative Control 74.655227 233.798465 154.226846 2.188159977 0.078659 144 95 SH10462 10462 RUF8 RUF8 236 252 31.743392 181.884278 106.813835 2.028627508 -0.0599 144 96 SH6879 6879 snR56 snR56 26 40 46.759663 203.467797 125.11373 2.097304972 0.013919 144 97 SH2211 2211 Phe1 5' flank 34.461559 230.723022 132.5922905 2.122518273 -0.459648 144 98 SH7800 7800 snoRNA cluster1 snR75 33.510167 218.721592 33.510167 186.211425 109.860796 2.040842741 -0.03469 144 99 SH20483 20483 YGL226C-A spliced 31.622541 178.910195 105.266368 2.022289639 -0.046503 144 100 SH9423 9423 RUF2 5' 29.722452 127.180281 78.4513665 1.894600513 0.122681 144 101 SH19985 19985 YBL091C-A spliced 31.558281 180.858334 106.2083075 2.026158488 -0.061309 144 102 SH12205 12205 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7911 7928 69.299033 252.50553 160.9022815 2.206562202 -0.141203 144 103 SH4402 4402 telomerase RNA telomerase 1046 1065 31.372902 142.385652 86.879277 1.938916198 0.147601 144 104 SH9945 9945 RUF5-1 RUF5-1 531 545 99.349831 265.356847 182.353339 2.26091372 0.093531 145 2 SH11064 11064 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2206 2221 28929.01777 18126.43847 23527.72812 4.371579993 0.305957 145 3 SH10123 10123 RUF6 RUF6 461 479 29.689832 146.688594 88.189213 1.945415467 0.009051 145 4 SH766 766 Gln4 3' flank 31.691482 139.291447 85.4914645 1.931922757 0.186367 145 5 SH8354 8354 snoRNA cluster4 3' 33.705123 212.895472 33.705123 180.190349 106.947736 2.029171595 0.027724 145 6 SH4295 4295 telomerase RNA telomerase 511 527 31.716527 171.558506 101.6375165 2.007054045 0.001676 145 7 SH21277 21277 YPL129W spliced 31.736305 160.854165 96.295235 1.983604797 0.068299 145 8 SH18495 18495 YMR194W_13_651144_651909_INTRON_17_479 intron 33.747871 201.791365 33.747871 169.043494 101.3956825 2.006019463 0.132731 145 9 SH2060 2060 Lys4 5' flank 29.71313 174.452851 102.0829905 2.008953384 -0.137297 145 10 SH15871 15871 YDL079C_4_314747_312950_INTRON_413_704 intron/exon 27.645285 167.694843 27.645285 141.049558 84.3474215 1.926071811 -0.110623 145 11 SH1278 1278 Ile2 tRNA-intron/exon 86 102 29.508952 161.858377 95.6836645 1.9808378 -0.083352 145 12 SH7357 7357 snR68 snR68 6 25 33.264481 153.616554 93.4405175 1.970535235 0.202989 145 13 SH4664 4664 snR3 3' 29.063208 162.844941 95.9540745 1.982063421 -0.119862 145 14 SH19166 19166 YPL079W_16_406631_407534_INTRON_12_432 5' exon 40.420931 236.007433 40.420931 196.586502 118.5037165 2.073731971 0.00198 145 15 SH19764 19764 Negative Control 30.389173 172.190211 101.289692 2.005565251 -0.081977 145 16 SH14238 14238 MT tRNA Ser 5' 26.284042 155.890302 26.284042 130.60626 78.445151 1.894566103 -0.152193 145 17 SH11506 11506 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4416 4434 37.347622 157.055995 97.2018085 1.987674345 0.382531 145 18 SH3441 3441 Trp1 tRNA 36 55 31.47199 151.092043 91.2820165 1.960385225 0.106067 145 19 SH9215 9215 snR6 / U6 RNA 5' 33.192 136.542846 84.867423 1.928741015 0.298517 145 20 SH12314 12314 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.270525 201.090012 31.270525 170.819487 101.045006 2.004514854 -0.020412 145 21 SH18712 18712 YNL130C_14_381156_379555_INTRON_30_470 intron 29.431033 186.276151 29.431033 157.845118 93.6380755 1.971452479 -0.0685 145 22 SH12463 12463 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 80.126494 286.288561 80.126494 207.162067 143.6442805 2.157288338 0.384717 145 23 SH2861 2861 Pro7 3' flank 27.767669 154.992464 91.3800665 1.96085147 -0.174781 145 24 SH14866 14866 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 / 3' 26.0318 144.591918 26.0318 119.560118 72.795959 1.862107272 -0.098429 145 25 SH4207 4207 telomerase RNA telomerase 71 90 26.171497 124.183058 75.1772775 1.876086594 -0.119138 145 26 SH2997 2997 Ser2 5' flank 28.200608 157.078907 92.6397575 1.96679741 -0.153186 145 27 SH21313 21313 YPL241C spliced 32.134295 168.957347 100.545821 2.002364025 0.041661 145 28 SH4912 4912 snR9 5' 187.757796 282.378138 235.067967 2.371193451 0.623705 145 29 SH14335 14335 MT VAR1 includes 5’ processing site VAR1 28.442848 209.000291 28.442848 181.557443 105.0001455 2.021189901 -0.259531 145 30 SH3713 3713 Val3 tRNA 46 58 117.779424 241.89467 179.837047 2.254879163 0.436161 145 31 SH5884 5884 snR35 3' 30.323325 183.184835 106.75408 2.028384482 -0.148919 145 32 SH13974 13974 MT COB Cytbi3 28.333481 158.399055 28.333481 131.065574 79.6995275 1.901455747 -0.000686 145 33 SH21209 21209 YOR096W spliced 30.128344 178.064168 104.096256 2.01743511 -0.132172 145 34 SH4678 4678 snR4 5' 31.883773 154.000871 92.942322 1.968213518 0.117596 145 35 SH7442 7442 snR69 3' 29.838724 171.983014 100.910869 2.003937946 -0.114925 145 36 SH9736 9736 RUF4 RUF4 456 471 30.628373 162.164466 96.3964195 1.984060903 -0.007613 145 37 SH20548 20548 YGR225W spliced 29.559083 169.975482 99.7672825 1.998988143 -0.120598 145 38 SH21828 21828 copy of SH16123 31.313684 184.320957 107.8173205 2.032688534 -0.098683 145 39 SH7731 7731 snoRNA cluster1 intergenic 29.379215 190.465153 29.379215 162.085938 95.7325765 1.981059747 -0.093634 145 40 SH17226 17226 YHR077C_8_255757_252375_INTRON_7_119 5' exon 29.335857 182.831229 29.335857 154.495372 91.9156145 1.963389295 -0.057846 145 41 SH14905 14905 MT tRNA Ile 3' 29.318615 205.162238 29.318615 176.843623 103.081119 2.013179124 -0.176113 145 42 SH12179 12179 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7781 7801 29.319981 135.547267 82.433624 1.916104393 0.044254 145 43 SH9541 9541 RUF3 RUF3 91 107 29.331923 150.359521 89.845722 1.953497403 -0.036142 145 44 SH3105 3105 Ser4 5' flank 33.055712 163.316608 98.18616 1.992050275 0.129009 145 45 SH10747 10747 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 621 634 69.418971 199.283576 134.3512735 2.128241787 0.344569 145 46 SH15494 15494 YBL092W_2_45639_46364_INTRON_1_333 intron 27.526432 152.948442 27.526432 126.42201 76.974221 1.886345302 -0.030223 145 47 SH13785 13785 MT COB intronic 29.401511 200.641202 29.401511 172.239691 100.820601 2.003549282 -0.144034 145 48 SH7947 7947 snoRNA cluster1 3' 34.082145 230.87288 34.082145 197.790735 115.93644 2.064219961 -0.126898 145 49 SH17860 17860 YLL050C_12_40413_39803_INTRON_15_193 5' exon 33.208208 218.369252 33.208208 186.161044 109.684626 2.040145759 -0.045077 145 50 SH1941 1941 Lys2 5' flank 31.426073 181.892373 106.659223 2.027998416 -0.074949 145 51 SH17232 17232 YHR077C_8_255757_252375_INTRON_7_119 intron 31.5398 164.105016 31.5398 133.565216 82.552508 1.916730272 0.209437 145 52 SH14106 14106 MT COB Cytbi4 29.804945 193.730346 29.804945 164.925401 97.365173 1.98840364 -0.077846 145 53 SH8366 8366 snoRNA cluster4 3' 29.97131 208.45378 29.97131 179.48247 104.72689 2.020058207 -0.150002 145 54 SH17455 17455 YIL148W_9_68708_69528_INTRON_9_442 intron 32.061781 202.477828 32.061781 171.416047 101.738914 2.007487097 0.02276 145 55 SH5594 5594 snR33 3' 32.269192 158.282471 95.2758315 1.978982748 0.115802 145 56 SH8348 8348 snoRNA cluster4 snR53/3' 30.544597 196.629485 30.544597 167.084888 98.8147425 1.994821743 -0.041861 145 57 SH20003 20003 YBR078W spliced 30.721946 170.719117 100.7205315 2.003118009 -0.052901 145 58 SH19000 19000 YOR122C_15_552886_552297_INTRON_14_222 intron 28.926706 203.958638 28.926706 176.031932 102.479319 2.010636231 -0.196596 145 59 SH12304 12304 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.99745 208.505971 30.99745 178.508521 104.7529855 2.020166409 -0.081542 145 60 SH8022 8022 snoRNA cluster 2 snR55 33.048733 154.366292 33.048733 122.317559 77.683146 1.890326805 0.376416 145 61 SH21375 21375 Leu8_9 spliced 29.175048 147.417668 88.296358 1.94594279 -0.031605 145 62 SH19386 19386 YPR043W_16_654161_654842_INTRON_3_405 intron 31.164092 175.423377 31.164092 145.259285 88.2116885 1.945526135 0.117556 145 63 SH9284 9284 RUF1 5' - 12 -4 14 29.196642 172.268678 100.73266 2.003170302 -0.157277 145 64 SH13884 13884 MT COB intronic 29.180097 199.589661 29.180097 171.409564 100.2948305 2.001278549 -0.153257 145 65 SH15801 15801 YDL061C_4_341182_340627_INTRON_1_408 intron 32.102478 213.204407 32.102478 182.101929 107.1022035 2.029798406 -0.048443 145 66 SH12927 12927 MT COX1 COX1ai2 29.133082 211.365066 29.133082 183.231984 106.182533 2.026053081 -0.224036 145 67 SH10411 10411 RUF8 5' 29.118623 173.412656 101.2656395 2.00546211 -0.169003 145 68 SH12537 12537 MT_ORF6 + ORF7 (hypothetical) ORF6/7 33.043325 196.496851 33.043325 164.453526 98.7484255 1.99453018 0.12126 145 69 SH7429 7429 snR69 snR69 46 63 27.175859 114.06502 70.6204395 1.848930416 0.029047 145 70 SH18869 18869 YNR053C_14_723108_721117_INTRON_811_1341 intron 31.142427 181.223404 31.142427 151.080977 91.111702 1.959574159 0.08428 145 71 SH8374 8374 snoRNA cluster 5 5' 27.2669 191.362037 27.2669 165.095137 96.1810185 1.983089372 -0.263383 145 72 SH15977 15977 YDL136W_4_217600_218367_INTRON_4_408 intron 29.311087 199.660339 29.311087 171.349252 100.3301695 2.001431546 -0.144526 145 73 SH3836 3836 RNaseP RNaseP 146 158 43.291395 161.724421 102.507908 2.01075737 0.480765 145 74 SH16840 16840 YGL178W_7_167356_170575_INTRON_4_643 intron 29.494141 179.326564 29.494141 150.832423 90.163282 1.955029712 -0.02724 145 75 SH21772 21772 copy of SH13812 29.589855 148.637014 89.1134345 1.949943182 -0.008639 145 76 SH21380 21380 Lys3_4 spliced 29.680468 136.7883 83.234384 1.92030277 0.062887 145 77 SH11464 11464 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4206 4223 1065.740827 1068.81044 1067.275634 3.028276594 0.497168 145 78 SH20689 20689 YIL133C spliced 51.994758 190.17942 121.087089 2.083097839 0.233316 145 79 SH11741 11741 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5591 5606 187.43437 383.244061 285.3392155 2.455361463 0.073928 145 80 SH4525 4525 U3b (snR17b) U3b 181 197 31.918694 169.478045 100.6983695 2.003022439 0.02595 145 81 SH21276 21276 YPL129W spliced 29.913814 177.529893 103.7218535 2.015870269 -0.142478 145 82 SH19653 19653 SIR1 2.2 29.905165 151.606887 90.756026 1.957875471 -0.002668 145 83 SH19798 19798 Negative Control 68.291833 203.700242 135.9960375 2.133526255 0.285845 145 84 SH17404 17404 YIL069C_9_232366_231550_INTRON_4_412 intron 29.835802 193.3649 29.835802 164.529098 97.18245 1.987587844 -0.073749 145 85 SH13554 13554 MT COX1 intronic / exon6 29.774047 169.107055 29.774047 140.333008 85.0535275 1.92969233 0.049579 145 86 SH13600 13600 MT ATP8/AAP1 ATP8 27.69161 170.05926 27.69161 143.36765 85.52963 1.932116593 -0.1198 145 87 SH2831 2831 Pro7 5' flank 29.579638 155.493934 92.536786 1.966314411 -0.04589 145 88 SH5131 5131 snR11 256-258 + 3' 256 26.465506 108.514293 67.4898995 1.829238781 0.016403 145 89 SH16149 16149 YDR092W_4_629869_630598_INTRON_31_298 intron 33.205053 215.125365 33.205053 182.920312 108.0626825 2.033675744 -0.015557 145 90 SH14711 14711 MT tRNA thr2 3' 29.05669 201.822406 29.05669 173.765716 101.411203 2.006085935 -0.17505 145 91 SH3810 3810 RNaseP RNaseP 16 33 28.8325 160.815385 94.8239425 1.976918008 -0.126242 145 92 SH13340 13340 MT COX1 COX1-ai5a 28.605307 171.952959 28.605307 144.347652 86.4764795 1.936898001 -0.05674 145 93 SH8189 8189 snoRNA cluster 3; snR70/intergenic 26.48282 158.217863 26.48282 132.735043 79.6089315 1.900961795 -0.150097 145 94 SH3179 3179 Ser5 tRNA 16 30 82.691228 218.198231 150.4447295 2.177376978 0.30731 145 95 SH16773 16773 YGL103W_7_310965_311925_INTRON_50_560 intron 47.039802 249.364288 47.039802 203.324486 125.182144 2.097542385 0.0193 145 96 SH19373 19373 YPR043W_16_654161_654842_INTRON_3_405 exon/intron 27.993221 181.754951 27.993221 154.76173 91.3774755 1.960839156 -0.156582 145 97 SH4993 4993 snR10 5' - 14 -4 14 44.932885 196.496958 120.7149215 2.081760956 0.067028 145 98 SH7145 7145 snR63 snR63 231 248 35.467413 153.482852 94.4751325 1.97531751 0.323747 145 99 SH5361 5361 snR30 3' 27.925698 141.784854 84.855276 1.92867885 -0.09342 145 100 SH1702 1702 Leu6 76-84 + 3' flank 76 27.917885 140.765758 84.3418215 1.926042976 -0.088388 145 101 SH3857 3857 RNaseP RNaseP 251 265 31.664542 179.89909 105.781816 2.024411018 -0.049622 145 102 SH861 861 Glu2 71-72 + 3' flank 71 27.846301 143.396647 85.621474 1.9325827 -0.108226 145 103 SH8882 8882 LSR1 / U2 RNA U2 1051 1065 40.990634 164.277206 102.63392 2.011290917 0.40802 145 104 SH3673 3673 Val2 3' flank 35.210238 136.399542 85.80489 1.933512039 0.421869 146 2 SH3727 3727 Val3 3' flank 31.932635 178.727586 105.3301105 2.02255254 -0.027223 146 3 SH18156 18156 YLR426W_12_987057_988108_INTRON_81_151 intron 46.118037 252.806792 46.118037 207.688755 126.903396 2.103473244 -0.041059 146 4 SH10853 10853 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1151 1166 46.058291 192.967381 119.512836 2.077414552 0.12353 146 5 SH16846 16846 YGL178W_7_167356_170575_INTRON_4_643 3' exon 45.012076 237.486608 45.012076 193.474532 119.243304 2.076434001 0.103023 146 6 SH20919 20919 YLR344W spliced 33.884722 169.897531 101.8911265 2.008136364 0.133343 146 7 SH6925 6925 snR58 5' - 7 -14 7 28.841942 149.422206 89.132074 1.950034012 -0.066315 146 8 SH17986 17986 YLR275W_12_694378_694800_INTRON_6_95 intron 29.82037 184.05628 29.82037 155.23591 92.52814 1.966273832 -0.027723 146 9 SH8546 8546 snR19 / U1 RNA U1 226 240 41.804917 190.707008 116.2559625 2.065415236 0.091575 146 10 SH4112 4112 SRP RNA SRP RNA 451 465 45.648578 185.482676 115.565627 2.06282868 0.207839 146 11 SH4765 4765 snR5 5' - 15 15 33.435799 195.190152 114.3129755 2.058095529 -0.116816 146 12 SH15884 15884 YDL082W_4_308423_309387_INTRON_5_369 intron 27.260764 158.438626 27.260764 132.177862 79.719313 1.901563547 -0.087067 146 13 SH4867 4867 snR8 snR8 116 128 32.842582 164.000187 98.4213845 1.99308947 0.112673 146 14 SH4638 4638 snR3 snR3 106 123 34.41437 164.005836 99.210103 1.996555901 0.200029 146 15 SH18764 18764 YNL246W_14_185459_186348_INTRON_33_127 5' exon 35.938366 221.161586 35.938366 186.22322 111.080793 2.045638971 0.041869 146 16 SH10264 10264 RUF7 5' 33.667699 169.049497 101.358598 2.005860595 0.128249 146 17 SH19121 19121 YPL031C_16_493033_492014_INTRON_18_119 intron/exon 33.360388 205.497495 33.360388 173.137107 103.2487475 2.013884792 0.082788 146 18 SH13002 13002 MT COX1 COX1ai2 31.268307 178.762534 31.268307 148.494227 89.881267 1.953669186 0.106641 146 19 SH3584 3584 Val1 5' flank 42.244813 204.733469 123.489141 2.09162877 -0.064328 146 20 SH20047 20047 YBR191W spliced 47.727174 211.001801 129.3644875 2.111815072 -0.054501 146 21 SH19037 19037 YOR234C_15_779404_778554_INTRON_20_546 intron 29.243184 188.032722 29.243184 159.789538 94.516361 1.975506992 -0.091707 146 22 SH5771 5771 snR35 snR35 41 59 29.321548 143.513659 86.4176035 1.936602218 -0.00014 146 23 SH13195 13195 MT COX1 Exon4 29.444241 177.478248 29.444241 149.034007 89.239124 1.950555298 -0.021038 146 24 SH12237 12237 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.59309 193.25451 29.59309 164.66142 97.127255 1.987341115 -0.091352 146 25 SH3983 3983 RNase MRP 331-340 + 3' 331 33.510132 158.701217 96.1056745 1.982749031 0.183659 146 26 SH9763 9763 RUF4 RUF4 591 613 31.787535 187.755079 109.771307 2.040488835 -0.111842 146 27 SH12876 12876 MT COX1 COX1ai1 31.922902 184.736471 31.922902 153.813569 92.8682355 1.967867194 0.121128 146 28 SH21749 21749 copy of SH12970 32.02543 163.479901 97.7526655 1.990128608 0.068801 146 29 SH5133 5133 snR11 3' 26.370885 130.942998 78.6569415 1.895737055 -0.147543 146 30 SH5255 5255 snR30 snR30 126 138 166.280855 379.762228 273.0215415 2.436196914 -0.042006 146 31 SH2940 2940 Ser1 5' flank 32.082814 178.585909 105.3343615 2.022570067 -0.017646 146 32 SH14909 14909 MT tRNA Tyr 5' 30.111952 197.573387 30.111952 168.461435 99.2866935 1.996891048 -0.076865 146 33 SH19453 19453 CYC1 30.0125 151.005288 90.508894 1.956691258 0.007988 146 34 SH1935 1935 Lys1 3' flank 28.000097 145.023149 86.511623 1.93707446 -0.105415 146 35 SH17280 17280 YHR141C_8_382752_381991_INTRON_5_445 intron 32.567243 228.198664 32.567243 196.631421 114.599332 2.059182086 -0.160761 146 36 SH21554 21554 copy of SH4780 82.283102 281.818349 182.0507255 2.260192414 -0.202315 146 37 SH12544 12544 MT_ORF6 + ORF7 (hypothetical) ORF6/7 / 3' 31.349348 208.112012 31.349348 177.762664 104.556006 2.019348985 -0.056185 146 38 SH4538 4538 U3b (snR17b) U3b 246 267 29.388168 178.697294 104.042731 2.017211743 -0.182278 146 39 SH21411 21411 Ser3 spliced 40.443789 167.325471 103.88463 2.016551297 0.358476 146 40 SH15590 15590 YBR084C-A_2_415219_414144_INTRON_3_508 3' exon 31.126133 194.208969 31.126133 164.082836 97.6044845 1.989469772 0.011816 146 41 SH5336 5336 snR30 snR30 531 547 34.804852 169.507131 102.1559915 2.009263843 0.169321 146 42 SH21546 21546 copy of SH4255 31.10207 164.015988 97.559029 1.989267469 0.010784 146 43 SH14422 14422 MT 21S rRNA 21S rRNA3 29.258033 172.468763 29.258033 144.21073 86.7343815 1.938191286 -0.008483 146 44 SH1040 1040 Gly3 5' flank 32.96069 151.799531 92.3801105 1.965578477 0.197928 146 45 SH16157 16157 YDR129C_4_715372_713333_INTRON_22_132 intron 29.269583 166.893553 29.269583 138.62397 83.9467765 1.924004024 0.023139 146 46 SH2367 2367 Phe3 3' flank 29.278893 149.074233 89.176563 1.95025073 -0.032943 146 47 SH19641 19641 RNA14 2.2 32.999087 200.78165 116.8903685 2.067778728 -0.182432 146 48 SH10671 10671 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 241 257 34.893814 163.445475 99.1696445 1.996378756 0.22937 146 49 SH21440 21440 TH302 - control oligo; WTP_222 33.106683 182.452775 107.779729 2.032537087 -0.014792 146 50 SH12727 12727 MT COX1 Exon1 33.207475 212.731565 33.207475 180.52409 106.8657825 2.02883867 0.006782 146 51 SH9722 9722 RUF4 RUF4 386 403 35.214589 190.665799 112.940194 2.052848529 -0.023871 146 52 SH20734 20734 YJL189W spliced 35.390664 171.073618 103.232141 2.013814935 0.173793 146 53 SH19198 19198 YPL081W_16_404945_406039_INTRON_8_508 intron 43.167517 225.393436 43.167517 183.225919 113.196718 2.053833835 0.202276 146 54 SH20117 20117 YDL075W spliced 32.001796 170.373174 101.187485 2.005126802 0.025459 146 55 SH16693 16693 YGL031C_7_438393_437938_INTRON_1_456 5' exon 32.195544 190.666872 32.195544 159.471328 95.833436 1.98151706 0.103928 146 56 SH6813 6813 snR52 5' 30.457372 175.732042 103.094707 2.013236369 -0.098473 146 57 SH14674 14674 MT 21S rRNA 21S rRNA4 30.615214 198.104612 30.615214 168.489398 99.552306 1.998051324 -0.046049 146 58 SH21247 21247 YPL031C spliced 33.663901 148.352454 91.0081775 1.959080417 0.260616 146 59 SH8710 8710 LSR1 / U2 RNA U2 191 210 28.912512 124.059908 76.48621 1.883583142 0.086446 146 60 SH7077 7077 snR62 3' 30.940882 181.271714 106.106298 2.025741162 -0.100563 146 61 SH2219 2219 Phe1 5' flank 40.789826 192.992775 116.8913005 2.06778219 0.049595 146 62 SH18460 18460 YMR143W_13_551927_552902_INTRON_25_568 intron 31.018775 190.26941 31.018775 160.250635 95.634705 1.980615523 0.02829 146 63 SH8373 8373 snoRNA cluster 5 5' 29.063961 198.799789 29.063961 170.735828 99.8998945 1.99956503 -0.158141 146 64 SH14775 14775 MT ORF11; tRNA Leu; tRNA Gln intergenic 30.029293 236.24406 30.029293 207.214767 118.62203 2.074165352 -0.346418 146 65 SH8500 8500 snR19 / U1 RNA 5' - 13 -4 13 34.899488 200.661735 117.7806115 2.071073805 -0.141517 146 66 SH161 161 Arg2 5' flank 48.595602 221.742596 135.169099 2.130877419 -0.15123 146 67 SH7152 7152 snR63 3' 30.947305 146.629411 88.788358 1.948356024 0.095464 146 68 SH8677 8677 LSR1 / U2 RNA U2 26 43 40.730597 167.759163 104.24488 2.018054734 0.357838 146 69 SH2847 2847 Pro7 tRNA-intron 41 57 30.968276 184.104814 107.536545 2.031556079 -0.114665 146 70 SH296 296 Arg4 3' flank 27.098546 122.518096 74.808321 1.873949908 -0.036448 146 71 SH12050 12050 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7136 7151 36.972252 187.1551 112.063676 2.049464864 0.051064 146 72 SH19854 19854 Negative Control 80.650099 222.750241 151.70017 2.180986067 0.243884 146 73 SH846 846 Glu2 5' flank - tRNA15 15 271.874343 412.136045 342.005194 2.534032702 0.371301 146 74 SH10345 10345 RUF7 RUF7 336 353 31.388278 158.495824 94.942051 1.977458609 0.061785 146 75 SH14099 14099 MT COB Cytbi4 31.507551 207.680312 31.507551 177.172761 104.340156 2.018451482 -0.043398 146 76 SH1476 1476 Leu2 3' flank 49.641834 212.48822 131.065027 2.117486821 -0.042888 146 77 SH11182 11182 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2796 2811 35.739301 164.131946 99.9356235 1.999720326 0.255437 146 78 SH4122 4122 SRP RNA SRP RNA 501 513 1817.678727 1893.913114 1855.795921 3.268530216 0.286467 146 79 SH10626 10626 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 16 33 31.891176 151.475247 91.6832115 1.962289817 0.131474 146 80 SH21431 21431 Tyr1_2 spliced 35.977223 181.819814 108.8985185 2.037021971 0.090681 146 81 SH13803 13803 MT COB intronic 30.961408 196.931307 30.961408 166.969899 98.9656535 1.995484497 -0.015825 146 82 SH8715 8715 LSR1 / U2 RNA U2 216 233 34.000628 168.952224 101.476426 2.006365163 0.146849 146 83 SH15191 15191 MT COX3 cox3 29.957018 191.547226 29.957018 162.590208 96.273613 1.983507271 -0.055732 146 84 SH14440 14440 MT 21S rRNA 21S rRNA3 68.420719 305.678821 68.420719 238.258102 153.3394105 2.185653789 -0.034242 146 85 SH14096 14096 MT COB Cytbi4 29.902613 174.71427 29.902613 145.811657 87.857135 1.943777037 0.028728 146 86 SH21063 21063 YMR201C spliced 33.870244 208.780276 121.32526 2.083951231 -0.249076 146 87 SH19737 19737 Negative Control 33.777288 177.898819 105.8380535 2.024641844 0.051883 146 88 SH14861 14861 MT tRNA Ser2; tRNA Arg2 tRNA Ser / tRNA Arg2 29.649195 176.324699 29.649195 147.675504 88.6623495 1.947739236 0.000776 146 89 SH4043 4043 SRP RNA SRP RNA 106 125 29.492325 147.47606 88.4841925 1.946865692 -0.009138 146 90 SH2776 2776 Pro6 5' flank 29.296594 165.502413 97.3995035 1.988556743 -0.116377 146 91 SH16215 16215 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 32.988271 234.14067 32.988271 202.152399 117.570335 2.070297756 -0.197482 146 92 SH15556 15556 YBR082C_2_407127_406586_INTRON_48_142 intron 30.774676 185.739362 30.774676 155.964686 93.369681 1.970205875 0.033855 146 93 SH1263 1263 Ile2 tRNA 11 25 78.958062 224.145956 151.552009 2.180561698 0.212608 146 94 SH11798 11798 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5876 5893 31093.13312 35028.07403 33060.60358 4.519310778 -0.64669 146 95 SH579 579 Gln1 5' flank 32.997718 184.792081 108.8948995 2.037007538 -0.040239 146 96 SH13083 13083 MT COX1 COX1ai3 31.921559 175.537345 31.921559 144.615786 88.2686725 1.945806595 0.170991 146 97 SH16496 16496 YER117W_5_396765_397649_INTRON_43_513 intron 33.744077 240.416672 33.744077 207.672595 120.708336 2.081737263 -0.24013 146 98 SH19916 19916 YAL003W spliced 31.821326 145.699633 88.7604795 1.94821964 0.158416 146 99 SH2964 2964 Ser1 tRNA 51 63 35.6032 165.5222 100.5627 2.002436925 0.236633 146 100 SH3893 3893 RNaseP 3' 33.712283 205.389208 119.5507455 2.077552289 -0.216718 146 101 SH834 834 Glu2 5' flank 28.023799 147.563653 87.793726 1.943463481 -0.117167 146 102 SH4599 4599 snR3 5' 101.04344 310.858093 205.9507665 2.313763413 -0.191726 146 103 SH1644 1644 Leu5 tRNA 86 102 509.190888 789.160751 649.1758195 2.812362335 0.053827 146 104 SH3630 3630 Val1 3' flank 29.768423 173.439869 101.604146 2.00691143 -0.127905 147 2 SH14653 14653 MT 21S rRNA 21S rRNA4 32.108845 206.124037 32.108845 175.015192 103.5620185 2.015200507 0.00439 147 3 SH5441 5441 snR31 3' 30.039806 187.070328 108.555067 2.0356501 -0.187804 147 4 SH6757 6757 snR50 5' 32.051151 167.278417 99.664784 1.99854173 0.046965 147 5 SH18057 18057 YLR333C_12_796335_795573_INTRON_1_423 intron 27.982759 178.568461 27.982759 151.585702 89.7842305 1.953200065 -0.14121 147 6 SH14837 14837 MT tRNA Asp 5' / tRNA Asp 29.991582 206.684603 29.991582 177.693021 103.8423015 2.016374305 -0.138558 147 7 SH8498 8498 snR19 / U1 RNA 5' - 2 -14 2 29.962179 169.30645 99.6343145 1.998408937 -0.09127 147 8 SH16148 16148 YDR092W_4_629869_630598_INTRON_31_298 intron 37.974572 251.597518 37.974572 214.622946 126.298759 2.101399083 -0.236087 147 9 SH21479 21479 copy of SH1652 29.803024 158.682344 94.242684 1.974247646 -0.046719 147 10 SH951 951 Gly1 tRNA 6 22 110.811523 293.908683 202.360103 2.306124892 0.006088 147 11 SH5748 5748 snR35 5' 29.424165 154.805579 92.114872 1.964329753 -0.053233 147 12 SH16440 16440 YER074W_5_306319_307192_INTRON_4_469 intron 31.10816 203.561648 31.10816 173.453488 102.280824 2.009794218 -0.045691 147 13 SH16612 16612 YFL034C-B_6_63992_63015_INTRON_21_134 3' exon 32.705371 222.01099 32.705371 190.305619 111.505495 2.04729627 -0.100511 147 14 SH14814 14814 "MT tRNAs (Lys, Arg1, Gly)" tRNA Arg1 28.4756 182.540638 28.4756 155.065038 91.770319 1.962702241 -0.122594 147 15 SH2773 2773 Pro6 5' flank 30.029637 178.197247 104.113442 2.017506805 -0.139066 147 16 SH16549 16549 YER133W_5_432491_433954_INTRON_178_702 intron 33.449738 179.59389 33.449738 147.144152 90.296945 1.955673057 0.253996 147 17 SH14233 14233 MT ATP9 3' 29.420577 185.600228 29.420577 157.179651 93.300114 1.969882174 -0.065815 147 18 SH9090 9090 snR14 / U4 RNA U4 66 87 32.904658 191.269149 112.0869035 2.049554872 -0.101756 147 19 SH16931 16931 YGR001C_7_498029_497128_INTRON_36_97 3' exon 30.920877 207.158499 30.920877 177.237622 104.0792495 2.017364152 -0.078906 147 20 SH2985 2985 Ser1 3' flank 30.864718 163.922168 97.393443 1.988529719 -0.002955 147 21 SH3305 3305 Thr2 3' flank 30.882458 158.056061 94.4692595 1.975290511 0.03032 147 22 SH6016 6016 snR37 5' - 12 -4 12 32.801646 179.766681 106.2841635 2.026468559 -0.000853 147 23 SH4510 4510 U3b (snR17b) U3b 106 122 32.008224 160.826495 96.4173595 1.984155234 0.084422 147 24 SH16809 16809 YGL137W_7_249872_252741_INTRON_19_218 3' exon 29.378559 207.476834 29.378559 179.098275 104.238417 2.018027807 -0.185167 147 25 SH8383 8383 snoRNA cluster 5 5' 36.997606 251.281391 36.997606 215.283785 126.1406955 2.100855221 -0.258754 147 26 SH11474 11474 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4256 4273 253.475006 508.854227 381.1646165 2.581112578 -0.070769 147 27 SH4572 4572 U3b (snR17b) U3b 416 431 118.421511 318.612075 218.516793 2.339484818 -0.07858 147 28 SH7172 7172 snR64 5' 39.363733 189.653988 114.5088605 2.058839093 0.066521 147 29 SH12767 12767 MT COX1 COX1ai1 31.868344 202.272341 31.868344 171.403997 101.6361705 2.007048293 0.011518 147 30 SH18852 18852 YNR053C_14_723108_721117_INTRON_811_1341 5' exon 31.903649 182.635982 31.903649 151.732333 91.817991 1.962927786 0.130912 147 31 SH18974 18974 YOR096W_15_505793_506766_INTRON_145_545 intron 37.590964 242.481496 37.590964 205.890532 121.740748 2.085435966 -0.147255 147 32 SH6908 6908 snR58 5' 29.955046 173.092039 101.5235425 2.006566763 -0.114182 147 33 SH3080 3080 Ser3 96-101 + 3' flank 96 26.102507 127.149573 76.62604 1.884376382 -0.144218 147 34 SH11913 11913 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6451 6470 433.989404 620.329941 527.1596725 2.72194218 0.250249 147 35 SH3288 3288 Thr2 tRNA 41 53 8179.561709 3427.012953 5803.287331 3.763674074 1.320116 147 36 SH13930 13930 MT COB Cytbi3 29.519266 190.333885 29.519266 161.814619 95.6669425 1.980761894 -0.082408 147 37 SH20997 20997 YML085C spliced 30.338354 143.998278 87.168316 1.940358656 0.068889 147 38 SH18996 18996 YOR122C_15_552886_552297_INTRON_14_222 intron 33.028773 184.725037 33.028773 152.696264 92.8625185 1.967840458 0.195801 147 39 SH11979 11979 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6781 6798 119.967669 285.067898 202.5177835 2.306463166 0.142826 147 40 SH2393 2393 Phe4 tRNA 16 28 55.162791 208.399875 131.781333 2.119853896 0.072359 147 41 SH17206 17206 YHR039C-A_8_187670_187164_INTRON_4_165 intron 31.989304 202.493942 31.989304 171.504638 101.746971 2.007521489 0.018004 147 42 SH18155 18155 YLR426W_12_987057_988108_INTRON_81_151 exon/intron 31.065611 186.642983 31.065611 156.577372 93.8214915 1.972302333 0.050206 147 43 SH2209 2209 Phe1 5' flank 46.795306 207.500795 127.1480505 2.104309706 -0.029757 147 44 SH2314 2314 Phe2 3' flank 31.072175 144.06521 87.5686925 1.942348865 0.118112 147 45 SH9912 9912 RUF5-1 RUF5-1 366 385 27.383875 124.377244 75.8805595 1.880130524 -0.027388 147 46 SH1176 1176 His1 3' flank 84.955434 237.926376 161.440905 2.208013583 0.158666 147 47 SH9322 9322 RUF1 RUF1 186 206 29.252361 159.034219 94.14329 1.973789371 -0.087217 147 48 SH11687 11687 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5321 5341 15809.9822 9379.292528 12594.63736 4.100185667 0.571014 147 49 SH2486 2486 Pro1 5' flank 46.078889 209.003936 127.5414125 2.105651222 -0.055801 147 50 SH19644 19644 SIR1 2.2 46.231835 217.787766 132.0098005 2.120606175 -0.145959 147 51 SH19516 19516 ACT1 29.582188 145.745804 87.663996 1.942821263 0.006471 147 52 SH13170 13170 MT COX1 intronic 29.733703 206.470838 29.733703 177.737135 103.735419 2.015927065 -0.154953 147 53 SH9746 9746 RUF4 RUF4 506 520 35.567712 174.644464 105.106088 2.021627872 0.144911 147 54 SH19304 19304 YPL198W_16_173151_174701_INTRON_12_420 intron 37.672536 230.987886 37.672536 194.31535 115.993943 2.064435312 -0.017429 147 55 SH16253 16253 YDR397C_4_1266887_1266355_INTRON_38_129 intron 34.055518 220.388224 34.055518 187.332706 110.694112 2.044124521 -0.025482 147 56 SH17568 17568 YJL189W_10_75932_76473_INTRON_7_392 intron 28.470763 183.658324 28.470763 156.187561 92.329162 1.965338894 -0.12879 147 57 SH10121 10121 RUF6 RUF6 451 467 32.451412 164.705126 98.578269 1.993781188 0.085916 147 58 SH17195 17195 YHR021C_8_148660_147862_INTRON_4_553 intron 55.866569 212.179329 55.866569 157.31276 106.5896645 2.027715095 0.705838 147 59 SH11470 11470 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4236 4249 116.306778 281.380796 198.843787 2.298512026 0.136593 147 60 SH218 218 Arg3 5' flank 29.830955 172.305209 101.068082 2.004614024 -0.117314 147 61 SH8743 8743 LSR1 / U2 RNA U2 356 372 28.903858 144.976711 86.9402845 1.939221057 -0.038261 147 62 SH7418 7418 snR69 5' - 12 -9 12 28.927712 134.07682 81.502266 1.911169684 0.024386 147 63 SH8096 8096 snoRNA cluster 2 3' 30.881804 188.414322 30.881804 158.532518 94.707161 1.976382818 0.027838 147 64 SH21085 21085 YMR292W spliced 32.821575 179.712959 106.267267 2.026399511 0.000379 147 65 SH12078 12078 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7276 7296 32.802258 183.727572 108.264915 2.034487739 -0.037608 147 66 SH2996 2996 Ser2 5' flank 30.835359 143.91729 87.3763245 1.941393772 0.103067 147 67 SH13635 13635 MT ATP6 ATP6 30.8245 187.710431 30.8245 157.885931 94.3552155 1.974765911 0.027294 147 68 SH21323 21323 YPR028W spliced 32.77566 168.542513 100.6590865 2.002852985 0.081102 147 69 SH20944 20944 YLR426W spliced 40.607696 183.691497 112.1495965 2.049797715 0.158102 147 70 SH17528 17528 YJL136C_10_156971_156248_INTRON_25_484 3' exon 30.903062 175.36892 30.903062 145.465858 88.18446 1.94539206 0.098949 147 71 SH6574 6574 snR47 5' 29.021477 187.576783 108.29913 2.034624968 -0.255021 147 72 SH5831 5831 snR35 snR35 341 355 873.636513 1174.724134 1024.180324 3.010376428 0.090883 147 73 SH6594 6594 snR47 snR47 76 92 36.115764 149.767718 92.941741 1.968210803 0.382506 147 74 SH17546 17546 YJL177W_10_90783_91654_INTRON_310_626 intron 30.326963 202.024301 30.326963 172.697338 101.5121505 2.006518028 -0.088796 147 75 SH10723 10723 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 501 521 29.463263 161.30535 95.3843065 1.979476926 -0.083795 147 76 SH9462 9462 RUF2 RUF2 151 167 33.574634 175.677835 104.6262345 2.019640595 0.065874 147 77 SH13790 13790 MT COB intronic 31.70158 199.071621 31.70158 168.370041 100.0358105 2.000155495 0.019855 147 78 SH3548 3548 Tyr2 tRNA 11 27 47.912088 175.6972 111.804644 2.048459843 0.360743 147 79 SH6484 6484 snR46 5' 29.881214 146.199327 88.0402705 1.944681368 0.025092 147 80 SH361 361 Arg5 3' flank 33.97741 167.560026 100.768718 2.003325733 0.154358 147 81 SH10714 10714 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 456 469 42.119192 198.447303 120.2832475 2.080205145 0.00515 147 82 SH20893 20893 YLR287C-A spliced 32.027677 187.191963 109.60982 2.039849465 -0.097757 147 83 SH4024 4024 SRP RNA SRP RNA 11 23 42.166087 186.959776 114.5629315 2.059044118 0.142088 147 84 SH18387 18387 YMR116C_13_500687_499455_INTRON_538_810 intron 27.995831 143.764285 27.995831 116.768454 72.3821425 1.859631434 0.070432 147 85 SH18652 18652 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.984781 146.314762 27.984781 119.329981 73.657381 1.867216273 0.051587 147 86 SH18823 18823 YNL302C_14_62942_61957_INTRON_21_571 intron 30.985762 211.179672 30.985762 181.19391 106.089836 2.025673778 -0.097417 147 87 SH7804 7804 snoRNA cluster1 snR75/intergenic 29.923415 172.487007 29.923415 143.563592 86.7435035 1.938236959 0.042382 147 88 SH20958 20958 YML025C spliced 33.855597 189.101705 111.478651 2.047191705 -0.048395 147 89 SH8395 8395 snoRNA cluster 5 snR190 111.025971 382.16589 111.025971 272.139919 191.582945 2.282356845 0.15347 147 90 SH10323 10323 RUF7 RUF7 226 243 29.527331 156.249807 92.888569 1.967962272 -0.053492 147 91 SH7157 7157 snR63 3' 29.312709 145.742393 87.527551 1.942144777 -0.012784 147 92 SH16447 16447 YER074W_5_306319_307192_INTRON_4_469 intron/exon 29.075711 161.562753 29.075711 133.487042 81.2813765 1.90999105 0.03857 147 93 SH10043 10043 RUF6 RUF6 61 77 26.896948 137.332013 82.1144805 1.91441975 -0.146401 147 94 SH6242 6242 snR42 5' - 11 -9 11 34.406445 192.324191 113.365318 2.054480211 -0.059157 147 95 SH12252 12252 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 38.031211 194.905552 38.031211 157.874341 97.952776 1.991016748 0.395489 147 96 SH9940 9940 RUF5-1 RUF5-1 506 523 28.312593 121.342121 74.827357 1.874060406 0.061681 147 97 SH8162 8162 snoRNA cluster 3; snR70 78.920397 342.532758 78.920397 264.612361 171.766379 2.23493816 -0.117846 147 98 SH789 789 Glu1 5' flank 28.190635 145.173808 86.6822215 1.937930033 -0.091941 147 99 SH380 380 Asn1 5' flank 30.077105 194.336199 112.206652 2.050018604 -0.236234 147 100 SH14331 14331 MT VAR1 includes 5’ processing site VAR1 31.980078 198.979968 31.980078 167.99989 99.989984 1.999956499 0.038442 147 101 SH13919 13919 MT COB Cytbi3 29.126133 191.602678 29.126133 163.476545 96.301339 1.983632326 -0.11851 147 102 SH1522 1522 Leu3 tRNA 81 97 5844.672117 6047.73492 5946.203519 3.77423977 -0.018427 147 103 SH14270 14270 MT VAR1 includes 5’ processing site VAR1 30.039844 179.821748 30.039844 150.781904 90.410874 1.956220668 0.011078 147 104 SH19952 19952 YBL050W spliced 2399.731814 3057.154258 2728.443036 3.435914891 -0.096486 148 2 SH7119 7119 snR63 snR63 101 120 30.184143 165.113912 97.6490275 1.989667922 -0.052534 148 3 SH1953 1953 Lys2 5' flank 30.161692 155.844333 93.0030125 1.968497016 -0.007273 148 4 SH6388 6388 snR43 snR43 181 197 31.163 146.568906 88.865953 1.948735403 0.110212 148 5 SH20014 20014 YBR084C-A spliced 34.197362 197.147592 115.672477 2.063230036 -0.117417 148 6 SH13694 13694 MT ORF 5 (hypothetical) 3' 30.1015 180.163992 30.1015 151.062492 90.581996 1.957041886 0.013827 148 7 SH19362 19362 YPR028W_16_623522_624197_INTRON_52_184 exon/intron 30.055178 190.945813 30.055178 161.890635 95.9729065 1.982148647 -0.04545 148 8 SH4528 4528 U3b (snR17b) U3b 196 212 31.992754 173.799191 102.8959725 2.012398376 0.004703 148 9 SH18866 18866 YNR053C_14_723108_721117_INTRON_811_1341 intron 29.83847 209.614768 29.83847 180.776298 105.307384 2.022458824 -0.165604 148 10 SH14768 14768 MT ORF11; tRNA Leu; tRNA Gln orf11 / tRNA Leu 29.641765 200.564786 29.641765 171.923021 100.782393 2.003384666 -0.126951 148 11 SH14522 14522 MT 21S rRNA 21S rRNA3 39.287741 231.122807 39.287741 192.835066 116.0614035 2.064687818 0.028926 148 12 SH16593 16593 YFL034C-A_6_64931_64242_INTRON_13_333 intron 34.935985 208.046515 34.935985 174.11053 104.5232575 2.019212936 0.12861 148 13 SH20178 20178 YDL189W spliced 32.567625 154.124137 93.345881 1.970095159 0.16006 148 14 SH6202 6202 snR40 snR40 71 88 89.786265 296.149224 192.9677445 2.285484721 -0.214906 148 15 SH20653 20653 YIL004C spliced 15828.96694 8077.314584 11953.14076 4.077482034 0.810363 148 16 SH15513 15513 YBR048W_2_332790_333771_INTRON_46_556 intron 27.643898 177.440463 27.643898 150.796565 89.2202315 1.950463346 -0.162802 148 17 SH7855 7855 snoRNA cluster1 intergenic 31.071359 205.828649 31.071359 175.75729 103.4143245 2.014580699 -0.061309 148 18 SH21264 21264 YPL081W spliced 40.031718 201.731661 120.8816895 2.082360521 -0.062868 148 19 SH18580 18580 YNL044W_14_545264_545873_INTRON_25_103 intron/exon 30.718495 188.001272 30.718495 158.282777 94.500636 1.975434731 0.018112 148 20 SH21354 21354 YPR187W spliced 939.709033 1410.914801 1175.311917 3.07015314 -0.10879 148 21 SH7776 7776 snoRNA cluster1 intergenic 32.505046 208.446155 32.505046 176.941109 104.7230775 2.020042396 0.015 148 22 SH6771 6771 snR50 snR50 31 48 38.074642 165.278531 101.6765865 2.007220958 0.319516 148 23 SH1162 1162 His1 tRNA 31 43 52.954817 210.810986 131.8829015 2.120188493 0.018946 148 24 SH11559 11559 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4681 4697 39017.5805 27339.19476 33178.38763 4.520855277 0.041387 148 25 SH18428 18428 YMR142C_13_551206_550205_INTRON_5_406 intron 31.16574 211.713806 31.16574 181.548066 106.356903 2.026765683 -0.088575 148 26 SH18261 18261 YML056C_13_164176_162194_INTRON_461_868 intron 31.315612 184.677881 31.315612 154.362269 92.8389405 1.967730176 0.078383 148 27 SH5650 5650 snR34 snR34 171 191 33.322599 145.292235 89.307417 1.950887529 0.256354 148 28 SH11515 11515 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4461 4477 44.729761 195.457978 120.0938695 2.079520838 0.076077 148 29 SH20110 20110 YDL064W spliced 190.022364 482.456289 336.2393265 2.526648507 -0.315512 148 30 SH32 32 Ala1 tRNA 56 68 33.585957 175.062398 104.3241775 2.018384969 0.0722 148 31 SH17985 17985 YLR275W_12_694378_694800_INTRON_6_95 intron 31.71031 180.02715 31.71031 149.31684 90.513575 1.956713718 0.131297 148 32 SH20607 20607 YHR077C spliced 505.305431 792.619629 648.96253 2.812219622 0.037101 148 33 SH18641 18641 YNL112W_14_413636_416278_INTRON_1274_2275 5' exon 36.312805 233.649208 36.312805 198.336403 117.324604 2.069389097 -0.088046 148 34 SH580 580 Gln1 5' flank 31.514515 156.609377 94.061946 1.973413959 0.079815 148 35 SH17664 17664 YKL006C-A_11_430270_429836_INTRON_37_177 5' exon 38.876405 207.266157 38.876405 169.389752 104.1330785 2.017588708 0.303018 148 36 SH16431 16431 YER074W_5_306319_307192_INTRON_4_469 intron 40.600229 249.499338 40.600229 209.899109 125.249669 2.097776587 -0.145103 148 37 SH2164 2164 Met2 5' flank 33.044619 169.417034 101.2308265 2.005312783 0.091122 148 38 SH9497 9497 RUF2 3' 36.668851 173.458803 105.063827 2.021453216 0.192931 148 39 SH15998 15998 YDL137W_4_216158_217074_INTRON_1_332 exon/intron 32.919117 203.671254 32.919117 171.752137 102.335627 2.010026855 0.0701 148 40 SH13216 13216 MT COX1 COX1-ai4 31.054787 214.417723 31.054787 184.362936 107.7088615 2.032251435 -0.110874 148 41 SH93 93 Ala2 3' flank 32.903018 170.71815 101.810584 2.007792929 0.075321 148 42 SH2516 2516 Pro1 71-72 + 3' flank 71 32.915636 156.58631 94.750973 1.976583678 0.163827 148 43 SH17960 17960 YLR185W_12_522665_523290_INTRON_8_366 intron 34.777441 189.441235 34.777441 155.663794 95.2206175 1.978730994 0.272686 148 44 SH3805 3805 RNaseP 5' - 3 3 40.339246 182.633576 111.486411 2.047221935 0.165989 148 45 SH10511 10511 RUF8 RUF8 481 502 27.401348 155.626624 91.513986 1.961487472 -0.205933 148 46 SH1657 1657 Leu5 3' flank 32.949547 151.632106 92.2908265 1.965158535 0.19839 148 47 SH4444 4444 telomerase RNA telomerase 1256 1270 183.192059 384.449485 283.820772 2.453044177 0.04283 148 48 SH9296 9296 RUF1 RUF1 56 73 34.86606 150.19874 92.5324 1.966293827 0.313755 148 49 SH16586 16586 YFL034C-A_6_64931_64242_INTRON_13_333 intron 44.247882 249.536969 44.247882 206.289087 125.2684845 2.097841823 -0.052151 148 50 SH16737 16737 YGL076C_7_365994_364333_INTRON_565_1032 intron 35.996251 212.712642 35.996251 177.716391 106.856321 2.028800218 0.129835 148 51 SH8380 8380 snoRNA cluster 5 5' 31.47318 193.398639 31.47318 162.925459 97.1993195 1.987663224 0.039736 148 52 SH17738 17738 YKL156W_11_158616_159214_INTRON_4_353 intron 99.601364 400.226999 99.601364 301.625635 200.6134995 2.302360154 -0.148969 148 53 SH4280 4280 telomerase RNA telomerase 436 455 29.90985 148.099773 89.0048115 1.949413485 0.016617 148 54 SH8791 8791 LSR1 / U2 RNA U2 596 612 30.066626 153.838503 91.9525645 1.963563846 -0.003331 148 55 SH11160 11160 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S/ITS1 2686 2710 30.213271 170.575794 100.3945325 2.001710062 -0.083259 148 56 SH11205 11205 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2911 2929 59.185925 201.979612 130.5827685 2.115885872 0.192321 148 57 SH15554 15554 YBR082C_2_407127_406586_INTRON_48_142 5' exon 30.457197 197.485895 30.457197 168.028698 99.2429475 1.996699654 -0.052941 148 58 SH9383 9383 RUF1 RUF1 491 508 49.890736 203.632023 126.7613795 2.102986957 0.054118 148 59 SH12674 12674 MT tRNA Trp 5' 30.628634 179.756737 30.628634 150.128103 90.3783685 1.956064497 0.054881 148 60 SH2880 2880 Pro8 5' flank 30.687638 131.498793 81.0932155 1.908984521 0.163902 148 61 SH20572 20572 YHR012W spliced 32.669069 173.347229 103.008149 2.012871583 0.046454 148 62 SH21239 21239 YOR312C spliced 89.447919 274.669213 182.058566 2.260211118 -0.073165 148 63 SH13998 13998 MT COB intronic 30.75806 231.133805 30.75806 201.375745 116.0669025 2.064708394 -0.26946 148 64 SH19791 19791 Negative Control 44.366292 213.021098 128.693695 2.10955727 -0.122704 148 65 SH10377 10377 RUF7 496-500 + 3' 496 38.508848 189.123434 113.816141 2.056203857 0.057088 148 66 SH11228 11228 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3026 3046 34.607339 171.058122 102.8327305 2.012131368 0.147134 148 67 SH21733 21733 copy of SH12133 39.460285 181.479388 110.4698365 2.043243711 0.164211 148 68 SH6013 6013 snR37 5' 32.674263 146.475315 89.574789 1.952185794 0.209008 148 69 SH8497 8497 snR19 / U1 RNA 5' 56.10088 175.577251 115.8390655 2.063855045 0.46136 148 70 SH20235 20235 YDR305C spliced 31.796006 169.076009 100.4360075 2.00188944 0.021164 148 71 SH11002 11002 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1896 1912 17794.05779 8194.983284 12994.52054 4.11376026 0.9388 148 72 SH10159 10159 RUF6 RUF6 641 660 56.548722 235.437086 145.992904 2.164331747 -0.167731 148 73 SH7888 7888 snoRNA cluster1 intergenic 31.130162 200.200926 31.130162 170.070764 100.600463 2.00259998 -0.024359 148 74 SH4791 4791 snR5 snR5 126 144 31.265674 155.537354 93.401514 1.970353916 0.068927 148 75 SH14755 14755 MT ORF11; tRNA Leu; tRNA Gln ORF11 29.424758 173.50107 29.424758 145.076312 87.250535 1.940768099 -0.001179 148 76 SH180 180 Arg2 16-28 16 28 51.526139 206.404648 128.9653935 2.110473188 0.046569 148 77 SH9075 9075 snR14 / U4 RNA 5' - 9 -9 9 33.682053 162.616192 98.1491225 1.991886421 0.168465 148 78 SH9680 9680 RUF4 RUF4 176 197 31.798032 146.526617 89.1623245 1.950181382 0.152311 148 79 SH17137 17137 YHR010W_8_126513_127484_INTRON_32_592 intron 31.895106 178.293302 31.895106 147.398196 89.646651 1.95253407 0.153832 148 80 SH17308 17308 YHR203C_8_505526_504472_INTRON_15_283 intron 31.96981 235.311651 31.96981 204.341841 118.1558255 2.072455139 -0.247845 148 81 SH6513 6513 snR46 snR46 56 72 34.045453 203.548695 118.797074 2.074805744 -0.190156 148 82 SH15152 15152 MT tRNA Thr1 reverse complement 3' 30.035571 184.663243 30.035571 155.627672 92.8316215 1.967695936 -0.014842 148 83 SH2758 2758 Pro5 3' flank 30.057326 180.056306 105.056816 2.021424234 -0.147888 148 84 SH14484 14484 MT 21S rRNA 21S rRNA3 32.096677 203.322883 32.096677 172.226206 102.1614415 2.009287012 0.020003 148 85 SH1645 1645 Leu5 tRNA 91 108 30.077741 167.401497 98.739619 1.994491447 -0.072578 148 86 SH8501 8501 snR19 / U1 RNA U1 1 18 56.487229 241.082333 148.784781 2.17255851 -0.217668 148 87 SH3708 3708 Val3 tRNA 21 36 42.207433 171.133037 106.670235 2.028043252 0.33967 148 88 SH14807 14807 "MT tRNAs (Lys, Arg1, Gly)" intergenic 28.979258 185.81936 28.979258 157.840102 93.40968 1.970391884 -0.100578 148 89 SH15506 15506 YBR048W_2_332790_333771_INTRON_46_556 intron 29.887023 222.090083 29.887023 193.20306 111.5450415 2.047450269 -0.233961 148 90 SH13384 13384 MT COX1 Exon 5b 37.755286 222.641674 37.755286 185.886388 111.820837 2.048522739 0.080706 148 91 SH2044 2044 Lys3 3' flank 29.543005 192.155585 110.849295 2.044732935 -0.246229 148 92 SH8331 8331 snoRNA cluster4 intergenic/snR53 31.292562 170.100933 31.292562 139.808371 85.5504665 1.932222382 0.157077 148 93 SH10576 10576 RUF8 RUF8 806 822 50.683022 168.124355 109.4036885 2.039031964 0.495168 148 94 SH12547 12547 MT_ORF6 + ORF7 (hypothetical) 3' 28.860058 187.398177 28.860058 159.538119 94.1990885 1.9740467 -0.1178 148 95 SH18486 18486 YMR194W_13_651144_651909_INTRON_17_479 intron 30.599364 179.715219 30.599364 150.115855 90.3576095 1.955964733 0.052963 148 96 SH19381 19381 YPR043W_16_654161_654842_INTRON_3_405 intron 38.137268 215.594232 38.137268 178.456964 108.297116 2.034616891 0.17666 148 97 SH9481 9481 RUF2 RUF2 246 262 76.546304 243.988384 160.267344 2.20484504 0.015534 148 98 SH8047 8047 snoRNA cluster 2 intergenic 32.187382 225.890531 32.187382 194.703149 113.4452655 2.054786376 -0.158186 148 99 SH13933 13933 MT COB Cytbi3 30.24839 185.697128 30.24839 156.448738 93.348564 1.970107641 -0.004452 148 100 SH1129 1129 Gly4 3' flank 30.242486 177.819145 104.0308155 2.017162003 -0.123705 148 101 SH4868 4868 snR8 snR8 121 133 34.074729 189.955792 112.0152605 2.049277193 -0.048271 148 102 SH5788 5788 snR35 snR35 126 145 30.24224 157.535553 93.8888965 1.972614235 -0.010482 148 103 SH4153 4153 SRP RNA SRP RNA 656 673 32.150807 165.471318 98.8110625 1.994805569 0.063804 148 104 SH15089 15089 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.20411 199.952351 30.20411 170.748241 100.4761755 2.002063096 -0.084852 149 2 SH18726 18726 YNL147W_14_350937_351380_INTRON_19_138 intron 30.241877 183.573163 30.241877 154.331286 92.2865815 1.965138559 0.00614 149 3 SH7233 7233 snR65 5' 28.181485 139.446756 83.8141205 1.923317192 -0.061259 149 4 SH13347 13347 MT COX1 COX1-ai5a 30.214641 193.869626 30.214641 164.654985 97.434813 1.988714156 -0.048184 149 5 SH411 411 Asn1 3' flank 40.410362 199.6565 120.033431 2.07930222 -0.033588 149 6 SH18562 18562 YMR292W_13_854795_855293_INTRON_23_104 intron/exon 34.241691 180.935047 34.241691 147.693356 90.9675235 1.958886372 0.297066 149 7 SH8399 8399 snoRNA cluster 5 snR190 28.083132 152.600542 28.083132 125.51741 76.800271 1.885362753 0.016908 149 8 SH12706 12706 MT ORF 8 (hypothetical) ORF8 27.989719 166.225858 27.989719 139.236139 83.612929 1.922273437 -0.074461 149 9 SH3623 3623 Val1 3' flank 27.841077 183.081556 105.4613165 2.023093188 -0.308 149 10 SH15767 15767 YCR097W_3_293828_294314_INTRON_106_159 5' exon 29.62272 200.044418 29.62272 171.421698 100.522209 2.002262024 -0.125186 149 11 SH18115 18115 YLR367W_12_855877_857316_INTRON_698_1180 intron/exon 31.30088 180.320472 31.30088 150.019592 90.660236 1.957416845 0.100523 149 12 SH351 351 Arg5 3' flank 520.288766 740.912758 630.600762 2.799754491 0.18396 149 13 SH1424 1424 Leu1 3' flank 34.357885 177.345623 105.851754 2.024698059 0.077555 149 14 SH2904 2904 Pro8 tRNA 41 55 39.586546 215.020203 127.3033745 2.104839916 -0.215363 149 15 SH1150 1150 His1 5' flank 38.117731 162.400217 100.258974 2.001123256 0.350516 149 16 SH15797 15797 YDL061C_4_341182_340627_INTRON_1_408 intron 49.747756 253.228582 49.747756 204.480826 127.114291 2.104194379 0.043003 149 17 SH21343 21343 YPR098C spliced 108.157305 290.923851 199.540578 2.300031226 0.001256 149 18 SH11994 11994 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6856 6869 70.935808 226.338671 148.6372395 2.172127631 0.100851 149 19 SH8154 8154 snoRNA cluster 3; intergenic/snR70 25.095725 133.891854 25.095725 109.796129 67.445927 1.828955728 -0.102118 149 20 SH6636 6636 snR48 snR48 6 25 82.406647 250.898394 166.6525205 2.221811886 0.026451 149 21 SH7444 7444 snR69 3' 26.879562 154.084789 90.4821755 1.956563034 -0.238665 149 22 SH8058 8058 snoRNA cluster 2 intergenic 45.140891 244.258325 45.140891 200.117434 122.6291625 2.088593762 0.028885 149 23 SH18779 18779 YNL265C_14_145280_144279_INTRON_28_132 intron 30.686771 213.117279 30.686771 183.430508 107.0586395 2.02962172 -0.128008 149 24 SH15640 15640 YBR186W_2_600511_602318_INTRON_1552_1664 intron 30.823155 218.706865 30.823155 188.88371 109.8534325 2.040813632 -0.158861 149 25 SH13267 13267 MT COX1 cox1ai4/intronic 29.130567 208.193372 29.130567 180.062805 104.596686 2.019517925 -0.206471 149 26 SH836 836 Glu2 5' flank 31.118628 151.038754 91.078691 1.95941678 0.082919 149 27 SH14646 14646 MT 21S rRNA intronic 29.398818 195.999932 29.398818 167.601114 98.499966 1.993436081 -0.119356 149 28 SH14883 14883 MT tRNA Ala tRNA 29.510981 193.767704 29.510981 165.256723 97.383852 1.988486949 -0.100042 149 29 SH238 238 Arg3 46-58 46 58 76.617043 212.507213 144.562128 2.160054533 0.294731 149 30 SH20286 20286 YDR471W spliced 36.219076 152.551643 94.3853595 1.974904634 0.369134 149 31 SH5162 5162 snR13 5' 31.551421 141.361007 86.456214 1.936796213 0.165227 149 32 SH20093 20093 YDL012C spliced 31.534252 164.626006 98.080129 1.991581028 0.03281 149 33 SH5503 5503 snR32 176-188+3' 176 29.609928 150.050881 89.8304045 1.953423355 -0.014901 149 34 SH5711 5711 snR34 snR34 476 493 31.399325 149.410339 90.404832 1.956191643 0.110337 149 35 SH16230 16230 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 31.303125 184.947821 31.303125 154.644696 92.9739105 1.968361098 0.076074 149 36 SH16722 16722 YGL033W_7_435621_436347_INTRON_56_125 5' exon 31.207688 202.534552 31.207688 172.326864 101.767276 2.00760815 -0.033099 149 37 SH8063 8063 snoRNA cluster 2 snR61 49.674841 258.740563 49.674841 210.065722 129.8702815 2.113509782 -0.01723 149 38 SH5466 5466 snR32 5' - 8 -9 8 32.921652 178.165451 105.5435515 2.023431704 0.01862 149 39 SH7734 7734 snoRNA cluster1 intergenic 64.403886 295.379057 64.403886 231.975171 148.1895285 2.170817516 -0.031012 149 40 SH2134 2134 Met1 tRNA 56 68 34.750203 173.106526 103.9283645 2.016734093 0.131982 149 41 SH19211 19211 YPL081W_16_404945_406039_INTRON_8_508 intron 30.158365 182.159305 30.158365 153.00094 91.5796525 1.961798991 0.007414 149 42 SH19288 19288 YPL175W_16_218629_220087_INTRON_18_117 5' exon 29.265931 180.291452 29.265931 152.025521 90.645726 1.957347332 -0.049743 149 43 SH15429 15429 YBL072C_2_89435_88518_INTRON_1_308 intron 44.122222 233.113863 44.122222 189.991641 117.0569315 2.068397135 0.132541 149 44 SH12111 12111 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7441 7454 3822.335133 2212.515091 3017.425112 3.4796365 1.023116 149 45 SH18659 18659 YNL112W_14_413636_416278_INTRON_1274_2275 intron 65.594847 293.896002 65.594847 229.301155 147.448001 2.168638889 0.007928 149 46 SH5627 5627 snR34 snR34 56 73 31.187178 203.381952 117.284565 2.069240861 -0.269591 149 47 SH8099 8099 snoRNA cluster 3; 5' 31.205239 219.169091 31.205239 188.963852 110.0845455 2.041726354 -0.144818 149 48 SH17070 17070 YGR214W_7_920570_921783_INTRON_91_545 3' exon 30.315073 196.482914 30.315073 167.167841 98.741457 1.994499531 -0.056466 149 49 SH20678 20678 YIL106W spliced 33.171322 185.599532 109.385427 2.038959466 -0.041311 149 50 SH14599 14599 MT 21S rRNA Sce1 endonuc 29.543374 196.433714 29.543374 167.89034 98.716857 1.99439132 -0.110573 149 51 SH7153 7153 snR63 3' 29.663736 153.495957 91.5798465 1.961799911 -0.029522 149 52 SH18238 18238 YML026C_13_223828_222987_INTRON_48_448 intron 31.684795 183.815818 31.684795 153.131023 92.407909 1.965709143 0.109193 149 53 SH15296 15296 MT 9S rRNA 3' 28.05799 170.371996 28.05799 143.314006 85.685998 1.932909859 -0.091826 149 54 SH346 346 Arg5 66-72 + 3' flank 66 3' flank 30.089532 124.171724 77.130628 1.887226867 0.167766 149 55 SH7149 7149 snR63 251-255 + 3' 251 28.310869 146.816054 87.5634615 1.942322921 -0.091744 149 56 SH691 691 Gln3 5' flank - tRNA2 5' flank 2 32.244841 204.825445 118.535143 2.073847128 -0.242218 149 57 SH15989 15989 YDL136W_4_217600_218367_INTRON_4_408 intron 31.383254 213.606359 31.383254 183.223105 107.3031795 2.030612591 -0.085944 149 58 SH21917 21917 copy of SH20000 32.42541 149.067179 90.7462945 1.9578289 0.178933 149 59 SH6154 6154 snR39B 3' 32.490562 129.65179 81.071176 1.908866473 0.295162 149 60 SH11711 11711 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5441 5454 13960.03279 13337.47145 13648.75212 4.135092946 -0.150201 149 61 SH21090 21090 YNL012W spliced 81.21569 245.993348 163.604519 2.213795295 0.051641 149 62 SH12720 12720 MT COX1 5' 28.722834 167.842056 28.722834 140.119222 84.421028 1.926450636 -0.024935 149 63 SH18223 18223 YML026C_13_223828_222987_INTRON_48_448 intron 40.354014 245.090802 40.354014 205.736788 123.045401 2.090065386 -0.102981 149 64 SH11442 11442 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4096 4112 17239.63607 13231.77969 15235.70788 4.182862637 0.135658 149 65 SH19531 19531 CBP1 1.2 32.583168 155.586383 94.0847755 1.973519353 0.151358 149 66 SH5066 5066 snR11 5' 30.641862 144.753607 87.6977345 1.942988374 0.085309 149 67 SH2395 2395 Phe4 tRNA-exon/intron 26 42 40.333039 198.749976 119.5415075 2.077518728 -0.024338 149 68 SH15388 15388 YBL040C_2_142830_142074_INTRON_23_119 exon/intron 28.731859 189.041474 28.731859 161.309615 95.020737 1.977818395 -0.135985 149 69 SH4523 4523 U3b (snR17b) U3b 171 188 30.709388 149.0738 89.891594 1.953719082 0.066054 149 70 SH9886 9886 RUF5-1 RUF5-1 236 248 34.663148 182.44405 108.553599 2.035644227 0.040324 149 71 SH104 104 Ala2 3' flank 34.762677 173.649756 104.2062165 2.017893628 0.127124 149 72 SH16187 16187 YDR367W_4_1212837_1213603_INTRON_31_131 intron 32.927894 195.816804 32.927894 163.88891 98.408402 1.99303218 0.118212 149 73 SH8031 8031 snoRNA cluster 2 snR55 35.027453 193.802054 35.027453 159.774601 97.401027 1.988563536 0.259594 149 74 SH1783 1783 Leu8 5' flank 29.263454 168.630888 98.947171 1.995403382 -0.133896 149 75 SH12012 12012 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6946 6964 29.398843 158.323998 93.8614205 1.972487123 -0.073225 149 76 SH15907 15907 YDL083C_4_307788_306925_INTRON_25_456 intron 33.5157 228.169419 33.5157 195.653719 114.5847095 2.059126668 -0.11796 149 77 SH8548 8548 snR19 / U1 RNA U1 236 250 607.854471 774.025807 690.940139 2.839440423 0.307446 149 78 SH113 113 Arg1 5' flank 31.784358 176.868104 104.326231 2.018393518 -0.025298 149 79 SH1822 1822 Leu8 3' flank 31.887934 170.737884 101.312909 2.005664785 0.016623 149 80 SH12297 12297 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.935216 144.210986 27.935216 117.27577 72.605493 1.860969479 0.062367 149 81 SH9022 9022 snR17a / U3a U3a 396 413 38.101196 186.576918 112.339057 2.050530774 0.079083 149 82 SH1706 1706 Leu6 3' flank 31.060175 164.180488 97.6203315 1.989540278 0.007246 149 83 SH18411 18411 YMR125W_13_517538_520445_INTRON_26_347 intron/exon 30.078049 175.001184 30.078049 145.923135 88.000592 1.944485594 0.040249 149 84 SH21480 21480 copy of SH1653 30.102379 169.532152 99.8172655 1.999205668 -0.083897 149 85 SH19955 19955 YBL059C-A spliced 30.123269 170.659215 100.391242 2.001695827 -0.089332 149 86 SH15332 15332 YAL003W_1_142172_143158_INTRON_81_446 3' exon 34.198606 211.888027 34.198606 178.689421 106.4440135 2.027121241 0.059251 149 87 SH1487 1487 Leu3 5' flank 30.136157 154.496153 92.316155 1.965277708 -0.001993 149 88 SH759 759 Gln4 66-72 + 3' flank 66 30.106565 140.53306 85.3198125 1.931049892 0.07186 149 89 SH5850 5850 snR35 snR35 436 453 128.291636 335.42813 231.859883 2.365225612 -0.091968 149 90 SH7413 7413 snR69 5' 27.903199 142.293562 85.0983805 1.929921295 -0.097909 149 91 SH5465 5465 snR32 5' - 3 -14 3 29.749279 166.365515 98.057397 1.99148036 -0.088768 149 92 SH895 895 Glu3 5' flank - tRNA5 5 29.544121 176.468094 103.0061075 2.012862976 -0.15963 149 93 SH5484 5484 snR32 snR32 81 98 27.34636 139.969137 83.6577485 1.922506172 -0.127528 149 94 SH18170 18170 YLR448W_12_1028848_1029762_INTRON_16_399 intron 60.562714 281.263006 60.562714 221.700292 141.131503 2.149623967 0.012628 149 95 SH14836 14836 MT tRNA Asp 5' 30.8433 187.381338 30.8433 157.538038 94.190669 1.974007882 0.030347 149 96 SH8614 8614 snR19 / U1 RNA U1 566 582 30.669813 149.070765 89.870289 1.953616138 0.063395 149 97 SH13886 13886 MT COB intronic 28.615565 183.365722 28.615565 155.750157 92.182861 1.964650183 -0.11599 149 98 SH17173 17173 YHR021C_8_148660_147862_INTRON_4_553 exon/intron 29.500234 191.006876 29.500234 162.506642 96.003438 1.982286786 -0.087203 149 99 SH21890 21890 copy of SH18800 30.418211 146.406925 88.412568 1.946514005 0.060906 149 100 SH19325 19325 YPL218W_16_138697_139408_INTRON_29_167 intron 32.323376 182.227129 32.323376 150.903753 91.6135645 1.961959781 0.162472 149 101 SH17810 17810 YKR057W_11_551293_551878_INTRON_25_346 intron 30.39814 194.495259 30.39814 165.097119 97.7476295 1.990106234 -0.038687 149 102 SH20412 20412 YFR032C-A spliced 41.983473 208.607807 125.29564 2.097935959 -0.110682 149 103 SH4632 4632 snR3 snR3 76 93 30.398159 145.937173 88.167666 1.945309344 0.062141 149 104 SH10233 10233 RUF6 RUF6 1011 1031 30.388166 149.682068 90.035117 1.954411933 0.040934 150 2 SH16393 16393 YER044C-A_5_239773_238459_INTRON_64_151 intron 30.239048 198.776876 30.239048 169.537828 99.888438 1.999515222 -0.075463 150 3 SH16068 16068 YDR005C_4_458099_456832_INTRON_7_86 intron 30.233832 185.87346 30.233832 156.639628 93.43673 1.970517631 -0.006439 150 4 SH8264 8264 snoRNA cluster4 snR67 34.319087 204.09735 34.319087 170.778263 102.548675 2.010930053 0.139877 150 5 SH6856 6856 snR56 5' 34.300837 144.765918 89.5333775 1.951984968 0.31934 150 6 SH1916 1916 Lys1 tRNA 36 53 12500.05908 15481.42576 13990.74242 4.145840761 -0.530339 150 7 SH12242 12242 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.12624 183.542842 30.12624 154.416602 92.271421 1.965067209 -0.002258 150 8 SH3806 3806 RNaseP 5' - 10 10 44.201289 214.634532 129.4179105 2.111994384 -0.142048 150 9 SH1666 1666 Leu5 3' flank 29.835604 165.631453 97.7335285 1.990043579 -0.079173 150 10 SH7537 7537 snR79 snR79 26 42 29.583443 169.220664 99.4020535 1.997395356 -0.114536 150 11 SH843 843 Glu2 5' flank - tRNA2 2 29.258856 196.210865 112.7348605 2.052058232 -0.285515 150 12 SH2299 2299 Phe2 91-92 + 3' flank 91 28.875955 124.606004 76.7409795 1.885027338 0.080204 150 13 SH16278 16278 YDR447C_4_1355542_1354818_INTRON_4_317 intron 32.295704 216.394371 32.295704 185.098667 108.6971855 2.036218299 -0.068797 150 14 SH13379 13379 MT COX1 intronic / exon 5b 35.605132 232.823225 35.605132 198.218093 116.9116125 2.067857651 -0.10067 150 15 SH3545 3545 Tyr2 5' flank - tRNA10 10 35.111274 173.70716 104.409217 2.018738839 0.13852 150 16 SH20749 20749 YJR021C spliced 35.60964 174.936661 105.2731505 2.02231762 0.143502 150 17 SH18025 18025 YLR306W_12_744151_744851_INTRON_4_137 intron 30.70395 174.634513 30.70395 144.930563 87.8172565 1.943579865 0.088521 150 18 SH480 480 Asp2 5' flank 37.752357 161.034421 99.393389 1.997357499 0.35323 150 19 SH13808 13808 MT COB Cytbi2 28.571782 178.797431 28.571782 151.225649 89.8987155 1.953753486 -0.095485 150 20 SH15904 15904 YDL083C_4_307788_306925_INTRON_25_456 intron 26.732104 186.36053 26.732104 160.628426 93.680265 1.971648111 -0.282662 150 21 SH11071 11071 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2241 2256 32.163709 156.564587 94.364148 1.974807023 0.120768 150 22 SH2121 2121 Met1 5' flank - tRNA3 8 30.435048 178.022157 104.2286025 2.017986915 -0.112999 150 23 SH7385 7385 snR68 3' 30.547716 177.889535 104.2186255 2.017945341 -0.105334 150 24 SH5628 5628 snR34 snR34 61 77 32.508065 162.029095 97.26858 1.987972576 0.10582 150 25 SH11147 11147 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2621 2639 38620.88239 32290.71056 35455.79647 4.549687246 -0.236085 150 26 SH3466 3466 Trp1 3' flank 75.41557 227.669546 151.542558 2.180534614 0.1412 150 27 SH18876 18876 YNR053C_14_723108_721117_INTRON_811_1341 intron 32.972598 212.954191 32.972598 180.981593 106.9770955 2.029290802 -0.005992 150 28 SH5513 5513 snR32 3' 34.033779 175.932036 104.9829075 2.021118596 0.079706 150 29 SH11744 11744 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5606 5623 18184.64903 10020.36292 14102.50597 4.149296292 0.646965 150 30 SH5187 5187 snR13 snR13 91 108 37.019077 150.548317 93.783697 1.972127349 0.423406 150 31 SH21487 21487 copy of SH1853 4982.95844 6438.35474 5710.65659 3.756686045 -0.324525 150 32 SH14409 14409 MT 21S rRNA 21S rRNA3 58.620564 300.59724 58.620564 242.976676 150.79862 2.178397367 -0.203643 150 33 SH2763 2763 Pro6 5' flank 31.384912 163.250169 97.3175405 1.988191125 0.032463 150 34 SH345 345 Arg5 61-72 + 3' flank 61 3' flank 1481.959902 1823.252119 1652.606011 3.218169328 0.077787 150 35 SH19934 19934 YBL026W spliced 33.085206 193.956032 113.520619 2.055074751 -0.118741 150 36 SH20697 20697 YIL148W spliced 32.0732 148.644787 90.3589935 1.955971385 0.158566 150 37 SH11804 11804 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5906 5919 26675.78484 29942.44444 28309.11464 4.451926287 -0.596474 150 38 SH891 891 Glu3 5' flank 31.975165 152.447189 92.211177 1.964783565 0.131751 150 39 SH1707 1707 Leu6 3' flank 32.899508 180.95931 106.929409 2.029097166 -0.008443 150 40 SH1652 1652 Leu5 3' flank 30.161868 159.440859 94.8013635 1.976814584 -0.025744 150 41 SH5426 5426 snR31 snR31 196 212 34.840231 176.853749 105.84699 2.024678512 0.098943 150 42 SH14112 14112 MT COB intronic 29.343714 189.953714 29.343714 161.61 95.476857 1.979898114 -0.093762 150 43 SH10681 10681 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 291 306 718.349165 1223.389777 970.869471 2.987160845 -0.224143 150 44 SH4269 4269 telomerase RNA telomerase 381 399 33.150519 142.142403 87.646461 1.942734385 0.263364 150 45 SH16908 16908 YGL232W_7_62074_63001_INTRON_58_115 intron 29.455094 178.664654 29.455094 150.20956 89.832327 1.95343265 -0.026637 150 46 SH12782 12782 MT COX1 COX1ai1 31.330786 241.873669 31.330786 211.542883 121.4368345 2.084350438 -0.332843 150 47 SH785 785 Glu1 5' flank 31.347926 153.985163 92.6665445 1.966922969 0.082505 150 48 SH2843 2843 Pro7 tRNA 21 36 85.781299 203.618502 144.6999005 2.160468232 0.478081 150 49 SH17800 17800 YKL190W_11_82949_83552_INTRON_53_128 5' exon 32.370354 156.843194 32.370354 125.47284 78.921597 1.897195865 0.312887 150 50 SH18210 18210 YML025C_13_225365_224406_INTRON_28_126 5' exon 33.396154 227.924725 33.396154 195.528571 114.4623625 2.058662705 -0.121161 150 51 SH20486 20486 YGL232W spliced 44.820842 206.208022 125.514432 2.098693665 -0.043091 150 52 SH6899 6899 snR56 3' 29.880362 172.460738 101.17055 2.005054111 -0.115137 150 53 SH13341 13341 MT COX1 COX1-ai5a 30.010924 188.295812 30.010924 159.284888 94.647906 1.97611101 -0.035363 150 54 SH20214 20214 YDR064W spliced 30.136776 170.71564 100.426208 2.001847064 -0.08883 150 55 SH9559 9559 RUF3 RUF3 181 197 35.984731 209.432603 122.708667 2.088875238 -0.213026 150 56 SH19181 19181 YPL079W_16_406631_407534_INTRON_12_432 intron 236.363573 658.868744 236.363573 423.505171 329.934372 2.518427562 0.16155 150 57 SH9435 9435 RUF2 RUF2 16 33 30.424168 167.7039 99.064034 1.995916009 -0.053003 150 58 SH21007 21007 YML094W spliced 30.486611 174.136822 102.3117165 2.009925371 -0.087414 150 59 SH2024 2024 Lys3 tRNA 66 80 346.701774 522.209877 434.4558255 2.637945625 0.262142 150 60 SH7026 7026 snR62 5' 65.4582 229.902624 147.680412 2.169322895 0.000805 150 61 SH3666 3666 Val2 71-74 + 3' flank 71 26.731745 120.637295 73.68452 1.867376259 -0.05152 150 62 SH19419 19419 YPR132W_16_794960_795762_INTRON_66_430 intron 51.912668 263.10301 51.912668 212.190342 132.051505 2.120743355 -0.009053 150 63 SH16698 16698 YGL031C_7_438393_437938_INTRON_1_456 intron 28.669791 236.183577 28.669791 208.513786 118.5917885 2.074054619 -0.412463 150 64 SH19168 19168 YPL079W_16_406631_407534_INTRON_12_432 exon/intron 32.526059 200.540738 32.526059 169.014679 100.770369 2.003332849 0.063969 150 65 SH9908 9908 RUF5-1 RUF5-1 346 365 32.5187 165.597343 99.0580215 1.99588965 0.0843 150 66 SH3033 3033 Ser2 3' flank 32.518587 166.144189 99.331388 1.997086504 0.080944 150 67 SH5898 5898 snR36 5' 30.600328 153.076214 91.838271 1.963023699 0.037208 150 68 SH309 309 Arg4 3' flank 32.566164 191.717127 112.1416455 2.049766924 -0.118091 150 69 SH21188 21188 YOL120C spliced 30.684035 150.988958 90.8364965 1.958260375 0.053999 150 70 SH8034 8034 snoRNA cluster 2 snR55 46.328218 235.371295 46.328218 190.043077 118.1856475 2.072564739 0.1616 150 71 SH11251 11251 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3141 3159 2483.6378 3395.892936 2939.765368 3.468312669 -0.216634 150 72 SH12047 12047 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7121 7134 30.960769 179.621727 105.291248 2.022392273 -0.090072 150 73 SH13269 13269 MT COX1 intronic 29.122242 181.748911 29.122242 153.626669 91.3744555 1.960824802 -0.068445 150 74 SH6065 6065 snR37 snR37 241 257 31.21868 146.285176 88.751928 1.948177796 0.115487 150 75 SH7883 7883 snoRNA cluster1 snR73 518.753354 1169.23028 518.753354 651.476926 585.11514 2.767241336 0.390887 150 76 SH18237 18237 YML026C_13_223828_222987_INTRON_48_448 intron 33.489575 227.856379 33.489575 195.366804 114.4281895 2.058533027 -0.116418 150 77 SH17254 17254 YHR097C_8_298611_297387_INTRON_126_249 3' exon 31.635489 204.181209 31.635489 173.54572 102.5906045 2.011107589 -0.014807 150 78 SH15028 15028 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.754821 193.287587 29.754821 164.532766 97.1437935 1.987415059 -0.079408 150 79 SH19993 19993 YBR048W spliced 31.866293 178.649028 105.2576605 2.022253713 -0.030664 150 80 SH21459 21459 copy of SH635 29.935516 162.179194 96.057355 1.982530624 -0.055172 150 81 SH15559 15559 YBR082C_2_407127_406586_INTRON_48_142 intron 32.01748 216.494719 32.01748 185.477239 108.7473595 2.036418721 -0.08261 150 82 SH3498 3498 Tyr1 tRNA-exon/intron 31 48 40.172805 192.045585 116.109195 2.064866614 0.051691 150 83 SH9381 9381 RUF1 RUF1 481 495 290.066449 513.837195 401.951822 2.604174002 0.074089 150 84 SH14470 14470 MT 21S rRNA 21S rRNA3 33.153711 208.628497 33.153711 176.474786 104.8142485 2.020420325 0.043123 150 85 SH21713 21713 copy of SH11293 72.9814 247.811471 160.3964355 2.205194713 -0.05781 150 86 SH196 196 Arg2 3' flank 30.173086 135.679769 82.9264275 1.918692956 0.103897 150 87 SH20115 20115 YDL075W spliced 36.297425 177.401457 106.849441 2.028772254 0.142809 150 88 SH15987 15987 YDL136W_4_217600_218367_INTRON_4_408 intron 28.156935 150.005848 28.156935 122.848913 75.502924 1.877963771 0.040115 150 89 SH6688 6688 snR49 5' 30.148003 159.708595 94.928299 1.977395699 -0.028057 150 90 SH7401 7401 snR69 5' 32.083889 183.081993 107.582941 2.031743412 -0.058194 150 91 SH10475 10475 RUF8 RUF8 301 320 31.935529 162.503256 97.2193925 1.987752903 0.069634 150 92 SH10645 10645 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 111 133 29.738253 148.273969 89.006111 1.949419826 0.003724 150 93 SH6530 6530 snR46 snR46 141 162 30.522194 166.531876 98.527035 1.993555414 -0.039865 150 94 SH1679 1679 Leu6 5' flank 29.310318 154.594743 91.9525305 1.963563685 -0.060174 150 95 SH2859 2859 Pro7 101-103 + 3' flank 101 29.105274 144.111844 86.608559 1.937560813 -0.018973 150 96 SH5889 5889 snR36 5' 34.777866 172.190968 103.484417 2.014874957 0.141884 150 97 SH12952 12952 MT COX1 COX1ai2 30.73151 201.254324 30.73151 171.522814 101.127162 2.00486782 -0.057091 150 98 SH12931 12931 MT COX1 COX1ai2 38.374801 246.796681 38.374801 209.42188 123.8983405 2.093065489 -0.173733 150 99 SH8540 8540 snR19 / U1 RNA U1 196 215 30.566751 157.503519 94.035135 1.973290152 0.011833 150 100 SH18191 18191 YML024W_13_225889_226697_INTRON_4_401 intron 32.466418 226.61107 32.466418 195.144652 113.805535 2.056163385 -0.151667 150 101 SH2705 2705 Pro5 5' flank 47.958749 178.88788 113.4233145 2.054702334 0.320199 150 102 SH16606 16606 YFL034C-B_6_63992_63015_INTRON_21_134 intron 32.462414 186.493211 32.462414 155.030797 93.7466055 1.971955551 0.148052 150 103 SH1015 1015 Gly2 66-72 + 3' flank 66 82 30.533221 140.674038 85.6036295 1.932492179 0.100715 150 104 SH21746 21746 copy of SH12761 65.793394 249.970725 157.8820595 2.198332783 -0.165171 151 2 SH12035 12035 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7061 7086 28.139199 129.693493 78.916346 1.897166968 -0.006115 151 3 SH4654 4654 snR3 186-195 + 3' 186 28.148407 123.127536 75.6379715 1.878739873 0.037614 151 4 SH10213 10213 RUF6 RUF6 911 928 28.155256 160.137684 94.14647 1.973804041 -0.172149 151 5 SH2216 2216 Phe1 5' flank 34.26962 197.633649 115.9516345 2.064276875 -0.121287 151 6 SH19279 19279 YPL143W_16_282121_282969_INTRON_20_544 intron 32.199153 199.370888 32.199153 168.171735 100.185444 2.000804627 0.050166 151 7 SH5769 5769 snR35 snR35 31 45 32.129988 178.509638 105.319813 2.022510079 -0.014466 151 8 SH13980 13980 MT COB intronic 28.971502 188.74659 28.971502 160.775088 94.873295 1.977143984 -0.116058 151 9 SH5986 5986 snR36 3' 27.786045 163.623738 95.7048915 1.980934135 -0.216989 151 10 SH3138 3138 Ser4 96-101 + 3' flank 96 28.530651 125.840463 77.185557 1.887536043 0.047292 151 11 SH3008 3008 Ser2 tRNA 1 13 191.899443 417.185641 304.542542 2.483647968 -0.049729 151 12 SH9220 9220 snR6 / U6 RNA 5' 26.842445 140.839292 83.8408685 1.923455768 -0.171472 151 13 SH17201 17201 YHR021C_8_148660_147862_INTRON_4_553 3' exon 26.438452 152.68969 26.438452 127.251238 76.844845 1.885614739 -0.118579 151 14 SH10580 10580 RUF8 RUF8 826 843 29.796898 137.520597 83.6587475 1.922511358 0.066972 151 15 SH2990 2990 Ser2 5' flank 30.302153 144.245095 87.273624 1.94088301 0.065024 151 16 SH21788 21788 copy of SH14443 29.018183 174.430093 101.724138 2.007424018 -0.181406 151 17 SH18412 18412 YMR125W_13_517538_520445_INTRON_26_347 3' exon 31.467864 212.553061 31.467864 182.085197 106.7765305 2.028475805 -0.073541 151 18 SH10427 10427 RUF8 RUF8 61 82 29.460777 150.561394 90.0110855 1.954295999 -0.028132 151 19 SH15207 15207 MT COX3 cox3 33.852713 177.241437 33.852713 144.388724 89.1207185 1.949978679 0.294162 151 20 SH21735 21735 copy of SH12340 30.226627 176.52787 103.3772485 2.014424969 -0.11728 151 21 SH2027 2027 Lys3 tRNA 81 93 37.462818 183.947452 110.705135 2.044167766 0.09804 151 22 SH10516 10516 RUF8 RUF8 506 528 24.942401 129.736582 77.3394915 1.888401312 -0.254296 151 23 SH12525 12525 MT_ORF6 + ORF7 (hypothetical) ORF6/7 25.040399 139.693441 25.040399 115.653042 70.3467205 1.847243856 -0.150291 151 24 SH14960 14960 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 26.97267 172.153056 26.97267 146.180386 86.576528 1.937400165 -0.190343 151 25 SH20717 20717 YJL136C spliced 49.092408 223.658517 136.3754625 2.134736236 -0.163146 151 26 SH8717 8717 LSR1 / U2 RNA U2 226 243 29.078495 146.059149 87.568822 1.942349507 -0.031372 151 27 SH16775 16775 YGL103W_7_310965_311925_INTRON_50_560 intron 25.527478 133.917588 25.527478 109.39011 67.458794 1.829038573 -0.06413 151 28 SH6448 6448 snR45 snR45 86 102 727.991103 1293.920037 1010.95557 3.004732069 -0.297418 151 29 SH6573 6573 snR47 5' 33.151579 167.695099 100.423339 2.001834657 0.107542 151 30 SH11321 11321 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3491 3508 27757.44087 36060.05208 31908.74647 4.503909743 -0.840076 151 31 SH6386 6386 snR43 snR43 171 188 35.120574 167.703782 101.412178 2.00609011 0.198188 151 32 SH4550 4550 U3b (snR17b) U3b 306 328 31.375918 158.777265 95.0765915 1.978073604 0.059531 151 33 SH19100 19100 YOR312C_15_901173_900242_INTRON_2_427 intron 36.922238 228.405609 36.922238 192.483371 114.7028045 2.059574037 -0.011032 151 34 SH13164 13164 MT COX1 intronic 29.40367 188.770423 29.40367 160.366753 94.8852115 1.97719853 -0.083269 151 35 SH13277 13277 MT COX1 Exon 5a 31.182205 188.48917 31.182205 158.306965 94.744585 1.976554398 0.049081 151 36 SH16689 16689 YGL030W_7_439087_439634_INTRON_4_233 intron 31.110763 196.905645 31.110763 166.794882 98.9528225 1.995428186 -0.005763 151 37 SH20332 20332 YER074W spliced 32.909128 153.971825 93.4404765 1.970535044 0.180565 151 38 SH11581 11581 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4791 4807 102.358126 297.393123 199.8756245 2.300759834 -0.095159 151 39 SH5016 5016 snR10 snR10 111 127 115.24524 334.536997 224.8911185 2.351972304 -0.19739 151 40 SH8664 8664 LSR1 / U2 RNA 5' 30.209099 130.915298 80.5621985 1.906131309 0.134267 151 41 SH18695 18695 YNL112W_14_413636_416278_INTRON_1274_2275 3' exon 33.07227 212.333078 33.07227 180.260808 106.666539 2.028028204 0.004358 151 42 SH2902 2902 Pro8 tRNA 31 43 31.306855 160.471607 95.889231 1.981769836 0.045249 151 43 SH14000 14000 MT COB intronic 29.52429 180.554286 29.52429 152.029996 90.777143 1.95797651 -0.031527 151 44 SH10289 10289 RUF7 RUF7 56 77 29.583641 156.155583 92.869612 1.967873631 -0.049049 151 45 SH17599 17599 YJL205C-A_10_50443_50139_INTRON_33_175 5' exon 31.492723 223.20032 31.492723 192.707597 112.10016 2.049606232 -0.166938 151 46 SH3141 3141 Ser4 3' flank 27.772181 130.189619 78.9809 1.897522078 -0.03628 151 47 SH8543 8543 snR19 / U1 RNA U1 211 228 31.53146 200.116145 115.8238025 2.063797819 -0.229123 151 48 SH3609 3609 Val1 tRNA 41 53 35.306976 177.534404 106.42069 2.02702607 0.108402 151 49 SH1071 1071 Gly3 3' flank 29.718817 164.992918 97.3558675 1.988362131 -0.084183 151 50 SH10907 10907 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1421 1439 23601.33182 13993.23946 18797.28564 4.274095141 0.453496 151 51 SH6661 6661 snR48 3' 55.424249 236.303475 145.863862 2.163947708 -0.191273 151 52 SH13297 13297 MT COX1 COX1-ai5a 28.084437 161.352878 28.084437 134.268441 81.176439 1.909429996 -0.038852 151 53 SH10556 10556 RUF8 RUF8 706 723 35.796648 145.697811 90.7472295 1.957833375 0.393907 151 54 SH1562 1562 Leu4 5' flank 30.202899 138.744585 84.473742 1.926721733 0.088569 151 55 SH17668 17668 YKL006C-A_11_430270_429836_INTRON_37_177 intron 30.304171 189.388335 30.304171 160.084164 95.1941675 1.97861034 -0.019237 151 56 SH1789 1789 Leu8 5' flank 28.471916 140.6978 84.584858 1.927292625 -0.046626 151 57 SH8221 8221 snoRNA cluster 3; snR51 30.459459 224.102837 30.459459 194.643378 112.5514185 2.051350973 -0.223767 151 58 SH2792 2792 Pro6 tRNA-intron 51 67 76.997839 285.959493 181.478666 2.258825578 -0.292678 151 59 SH15758 15758 YCR031C_3_178212_177492_INTRON_8_314 intron 28.622409 176.976765 28.622409 149.354356 88.9883825 1.949333313 -0.082053 151 60 SH5670 5670 snR34 snR34 271 290 30.574395 160.455003 95.514699 1.980070211 -0.002688 151 61 SH21796 21796 copy of SH14861 28.654577 149.027858 88.8412175 1.948614502 -0.077982 151 62 SH16559 16559 YER133W_5_432491_433954_INTRON_178_702 intron 28.653593 195.340298 28.653593 167.686705 98.170149 1.99197945 -0.173054 151 63 SH229 229 Arg3 1-13 1 13 34.437199 169.269894 101.8535465 2.007976156 0.158963 151 64 SH18806 18806 YNL301C_14_64561_63569_INTRON_113_544 intron 28.634438 160.292819 28.634438 132.658381 80.6464095 1.906585037 0.011214 151 65 SH18102 18102 YLR367W_12_855877_857316_INTRON_698_1180 intron 30.556282 173.351373 30.556282 143.795091 87.1756865 1.940395376 0.084887 151 66 SH17268 17268 YHR123W_8_354817_356083_INTRON_51_141 intron 32.49075 187.474004 32.49075 155.983254 94.237002 1.974221461 0.14346 151 67 SH13773 13773 MT COB intronic 32.513913 219.263598 32.513913 187.749685 110.131799 2.041912733 -0.084727 151 68 SH7875 7875 snoRNA cluster1 snR73 30.624521 172.027015 30.624521 142.402494 86.5135075 1.93708392 0.0974 151 69 SH19376 19376 YPR043W_16_654161_654842_INTRON_3_405 intron 30.686784 203.206292 30.686784 173.519508 102.103146 2.009039124 -0.071572 151 70 SH16384 16384 YER007C-A_5_166884_166236_INTRON_12_114 intron 30.76735 204.110972 30.76735 174.343622 102.555486 2.010958897 -0.071485 151 71 SH1199 1199 Ile1 5' flank 38.667643 156.493041 97.580342 1.989362336 0.430199 151 72 SH18980 18980 YOR096W_15_505793_506766_INTRON_145_545 intron 29.014905 205.37222 29.014905 177.357315 103.18611 2.01362124 -0.198526 151 73 SH4119 4119 SRP RNA SRP RNA 486 498 31.086051 162.46361 96.7748305 1.985762419 0.019483 151 74 SH568 568 Cys1 3' flank 31.209174 160.429984 95.819579 1.981454258 0.039671 151 75 SH6227 6227 snR42 5' 31.33755 146.240913 88.7892315 1.948360297 0.123619 151 76 SH15443 15443 YBL087C_2_60732_59815_INTRON_43_546 5' exon 218.452839 638.392896 218.452839 420.940057 319.696448 2.504737811 0.081536 151 77 SH10293 10293 RUF7 RUF7 76 93 29.60256 160.834975 95.2187675 1.978722556 -0.071641 151 78 SH3427 3427 Trp1 5' flank 29.715983 162.506181 96.111082 1.982773466 -0.072079 151 79 SH17839 17839 YKR094C_11_618384_617630_INTRON_9_376 intron 31.825183 188.134388 31.825183 157.309205 94.567194 1.975740503 0.096168 151 80 SH20652 20652 YIL004C spliced 8072.232375 3362.025049 5717.128712 3.75717797 1.333426 151 81 SH13311 13311 MT COX1 COX1-ai5a 29.965567 192.263801 29.965567 163.298234 96.6319005 1.985120521 -0.05866 151 82 SH19233 19233 YPL090C_16_378390_377286_INTRON_7_400 intron 30.016524 172.856565 30.016524 143.840041 86.9282825 1.939161099 0.047426 151 83 SH1624 1624 Leu5 5' flank - tRNA5 5 32.083367 178.026818 105.0550925 2.021417109 -0.014428 151 84 SH19496 19496 YPT1 32.125838 184.38917 108.257504 2.03445801 -0.068634 151 85 SH20700 20700 YJL001W spliced 30.140151 170.282251 100.211201 2.000916267 -0.086038 151 86 SH8972 8972 snR17a / U3a U3a 146 162 32.216092 188.320799 110.2684455 2.042451252 -0.100876 151 87 SH17965 17965 YLR185W_12_522665_523290_INTRON_8_366 intron 147.220287 459.403816 147.220287 313.183529 230.201908 2.362108919 0.17762 151 88 SH21865 21865 copy of SH19500 42.476096 171.489469 106.9827825 2.029313889 0.339628 151 89 SH9941 9941 RUF5-1 RUF5-1 511 527 32.257823 135.961665 84.109744 1.924846311 0.242727 151 90 SH1661 1661 Leu5 3' flank 33.20845 196.384809 114.7966295 2.059929137 -0.135286 151 91 SH15003 15003 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.048208 187.880579 30.048208 158.832371 94.4402895 1.97515731 -0.030481 151 92 SH9245 9245 snR6 / U6 RNA 96-112 + 3' 96 27.8765 125.953009 76.9147545 1.886009658 -0.001152 151 93 SH6181 6181 snR40 5' 29.692724 197.006901 113.3498125 2.054420806 -0.274675 151 94 SH7315 7315 snR66 snR66 66 85 29.48074 138.53991 84.010325 1.924332665 0.038751 151 95 SH4348 4348 telomerase RNA telomerase 776 793 37.16431 197.050826 117.107568 2.068584962 -0.057485 151 96 SH12193 12193 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7851 7866 34.964821 200.030462 117.4976415 2.070029149 -0.133332 151 97 SH1899 1899 Lys1 5' flank 32.829703 188.573378 110.7015405 2.044153664 -0.080536 151 98 SH14992 14992 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.757843 179.030659 30.757843 149.272816 90.0153295 1.954316476 0.068245 151 99 SH7215 7215 snR64 3' 30.677342 153.641921 92.1596315 1.96454073 0.039436 151 100 SH10586 10586 RUF8 RUF8 856 868 32.569566 177.226881 104.8982235 2.020768133 0.014652 151 101 SH15251 15251 MT tRNA fMet 3' 30.615695 213.292647 30.615695 183.676952 107.1463235 2.029977274 -0.133707 151 102 SH3676 3676 Val2 3' flank 30.61732 148.474546 89.545933 1.952045866 0.063086 151 103 SH5282 5282 snR30 snR30 261 276 32.573961 181.983105 107.278533 2.030512826 -0.029875 151 104 SH2163 2163 Met2 5' flank 30.644384 174.410163 102.5272735 2.010839408 -0.079359 152 2 SH535 535 Cys1 5' flank 32.154696 179.000701 105.5776985 2.023572191 -0.017511 152 3 SH8002 8002 snoRNA cluster 2 intergenic 30.120186 197.823766 30.120186 168.70358 99.411883 1.9974383 -0.077814 152 4 SH3293 3293 Thr2 66-72 + 3' flank 66 36.248431 158.717201 97.482816 1.988928066 0.32899 152 5 SH4445 4445 telomerase RNA telomerase 1261 1273 3078.349511 4060.16942 3569.259466 3.55257812 -0.218097 152 6 SH1439 1439 Leu2 5' flank 36.206078 169.997368 103.101723 2.013265923 0.211731 152 7 SH13593 13593 MT ATP8/AAP1 5' 28.019207 177.206692 28.019207 150.187485 89.103346 1.949894013 -0.131247 152 8 SH2013 2013 Lys3 tRNA 11 25 40.021554 190.703487 115.3625205 2.062064736 0.065453 152 9 SH1607 1607 Leu5 5' flank 29.728285 182.388835 106.05856 2.025545726 -0.181542 152 10 SH7764 7764 snoRNA cluster1 snR76 35.410403 206.743085 35.410403 172.332682 103.8715425 2.016496581 0.162087 152 11 SH17543 17543 YJL177W_10_90783_91654_INTRON_310_626 intron 29.099478 206.077458 29.099478 177.97798 103.538729 2.015102829 -0.196635 152 12 SH14813 14813 "MT tRNAs (Lys, Arg1, Gly)" tRNA Arg1 32.554041 190.657937 32.554041 159.103896 95.8289685 1.981496813 0.126972 152 13 SH21311 21311 YPL241C spliced 30.147511 183.70596 106.9267355 2.029086308 -0.162675 152 14 SH19996 19996 YBR048W spliced 236.812384 391.616695 314.2145395 2.497226277 0.299639 152 15 SH13271 13271 MT COX1 intronic/exon5 58.931639 284.327223 58.931639 226.395584 142.6636115 2.154313214 -0.053015 152 16 SH15031 15031 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.080451 194.01802 27.080451 167.937569 97.50901 1.989044747 -0.291451 152 17 SH21340 21340 YPR098C spliced 28.640571 148.402412 88.5214915 1.947048723 -0.075734 152 18 SH17258 17258 YHR101C_8_315970_314876_INTRON_111_197 exon/intron 28.468711 187.546123 28.468711 160.077412 94.2730615 1.974387611 -0.148868 152 19 SH8803 8803 LSR1 / U2 RNA U2 656 670 82.476729 235.372003 158.924366 2.201190488 0.153537 152 20 SH3861 3861 RNaseP RNaseP 271 283 35.546061 168.483893 102.014977 2.008663936 0.204782 152 21 SH2913 2913 Pro8 tRNA 86 101 41.006663 160.590653 100.798658 2.00345475 0.45694 152 22 SH8186 8186 snoRNA cluster 3; snR70 39.335831 214.411629 39.335831 176.075798 107.7058145 2.032239149 0.227808 152 23 SH2077 2077 Lys4 tRNA-intron/exon 51 67 58.597604 237.102422 147.850013 2.169821367 -0.153302 152 24 SH5126 5126 snR11 snR11 231 250 26.966721 136.027942 81.4973315 1.911143389 -0.133166 152 25 SH7858 7858 snoRNA cluster1 intergenic 27.109194 164.061148 27.109194 137.951954 82.530574 1.916614866 -0.133969 152 26 SH2933 2933 Pro8 3' flank 91.984786 266.257762 179.121274 2.25314717 0.013594 152 27 SH17649 17649 YJR145C_10_702761_701720_INTRON_15_270 intron 32.922654 213.722185 32.922654 181.799531 107.3610925 2.030846922 -0.015417 152 28 SH8259 8259 snoRNA cluster4 5' 33.059935 181.429556 33.059935 149.369621 91.214778 1.960065205 0.21751 152 29 SH14211 14211 MT ATP9 5' 29.443797 198.726626 29.443797 170.282829 99.863313 1.99940597 -0.129738 152 30 SH371 371 Asn1 5' flank 33.231209 162.431241 97.831225 1.990477492 0.14443 152 31 SH9574 9574 RUF3 RUF3 256 270 35.120644 191.011716 113.06618 2.05333272 -0.029708 152 32 SH3909 3909 RNase MRP 5' 31.367923 152.152797 91.76036 1.962655109 0.093526 152 33 SH21018 21018 YMR033W spliced 35.039741 187.786958 111.4133495 2.046937231 0.004561 152 34 SH3786 3786 Val4 3' flank 36.815817 175.874149 106.344983 2.026717006 0.174387 152 35 SH9311 9311 RUF1 RUF1 131 147 33.94048 163.697412 98.818946 1.994840217 0.176021 152 36 SH18522 18522 YMR225C_13_721402_720959_INTRON_59_205 intron 27.401152 155.611571 27.401152 129.210419 78.3057855 1.89379385 -0.057685 152 37 SH510 510 Asp2 3' flank 31.056631 153.96108 92.5088555 1.966183308 0.063257 152 38 SH17061 17061 YGR214W_7_920570_921783_INTRON_91_545 intron 34.75296 191.702548 34.75296 157.949588 96.351274 1.983857461 0.256559 152 39 SH17647 17647 YJR145C_10_702761_701720_INTRON_15_270 intron 32.955979 193.232369 32.955979 161.27639 97.1161845 1.987291612 0.136132 152 40 SH9116 9116 snR14 / U4 RNA 3' 27.489068 125.214374 76.351721 1.882818831 -0.025062 152 41 SH12676 12676 MT tRNA Trp 5' 29.447782 205.67979 29.447782 177.232008 103.339895 2.014268016 -0.170125 152 42 SH388 388 Asn1 21-33 21 33 38.908526 185.885418 112.396972 2.050754611 0.102004 152 43 SH18438 18438 YMR142C_13_551206_550205_INTRON_5_406 intron 46.567822 219.297777 46.567822 173.729955 110.1488885 2.041980119 0.369395 152 44 SH13710 13710 MT tRNAGlu (and 5' processing site for COB) 3' 27.873245 197.209932 27.873245 170.336687 99.104966 1.996095417 -0.243058 152 45 SH4155 4155 SRP RNA 666-675 + 3' 666 31.6885 172.67743 102.182965 2.0093785 -0.006582 152 46 SH12455 12455 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.719794 212.875327 31.719794 182.155533 106.9376635 2.029130691 -0.063305 152 47 SH10517 10517 RUF8 RUF8 511 532 31.734426 197.768797 114.7516115 2.059758793 -0.201526 152 48 SH20409 20409 YFR032C-A spliced 41.194207 211.018175 126.106191 2.100736408 -0.148538 152 49 SH3875 3875 RNaseP RNaseP 341 356 34.605184 165.42223 100.013707 2.000059525 0.201628 152 50 SH6731 6731 snR49 3' 35.602175 147.056702 91.3294385 1.960610788 0.374291 152 51 SH16581 16581 YER179W_5_548416_549512_INTRON_133_224 3' exon 31.888696 205.435915 31.888696 174.547219 103.2179575 2.013755261 -0.005751 152 52 SH17149 17149 YHR012W_8_129473_130440_INTRON_49_167 exon/intron 30.080506 174.461481 30.080506 145.380975 87.7307405 1.943151795 0.043434 152 53 SH8528 8528 snR19 / U1 RNA U1 136 153 32.085326 160.491352 96.288339 1.983573695 0.091039 152 54 SH17759 17759 YKL157W_11_154993_158183_INTRON_282_664 intron 30.27942 179.106094 30.27942 149.826674 90.053047 1.954498412 0.032711 152 55 SH4858 4858 snR8 snR8 71 87 104.513961 287.261392 195.8876765 2.292007115 -0.008811 152 56 SH12606 12606 MT_15S MT_15S 45.874312 255.969633 45.874312 211.095321 128.4848165 2.108851809 -0.08103 152 57 SH20315 20315 YER044C-A spliced 62.449048 241.157285 151.8031665 2.181280831 -0.136501 152 58 SH8891 8891 LSR1 / U2 RNA U2 1096 1108 36.365361 169.569775 102.967568 2.012700455 0.221239 152 59 SH4053 4053 SRP RNA SRP RNA 156 173 30.600554 174.548976 102.574765 2.011040531 -0.082843 152 60 SH8942 8942 snR17a / U3a 5' - 10 -4 10 30.614231 161.274777 95.944504 1.982020102 -0.004114 152 61 SH5581 5581 snR33 3' 28.680293 141.460442 85.0703675 1.929778309 -0.035481 152 62 SH11892 11892 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6346 6361 381.86818 605.878096 493.873138 2.693615405 0.13204 152 63 SH19823 19823 Negative Control 33.474968 202.039157 117.7570625 2.070986963 -0.1859 152 64 SH3783 3783 Val4 3' flank 30.559374 176.557601 103.5584875 2.015185699 -0.096985 152 65 SH16579 16579 YER179W_5_548416_549512_INTRON_133_224 intron 34.410019 199.782168 34.410019 166.372149 100.391084 2.001695144 0.185238 152 66 SH18172 18172 YLR448W_12_1028848_1029762_INTRON_16_399 intron 32.4884 229.715147 32.4884 198.226747 115.3575735 2.062046112 -0.1773 152 67 SH3183 3183 Ser5 tRNA 36 52 84.982154 235.054927 160.0185405 2.204170305 0.182749 152 68 SH17784 17784 YKL180W_11_109271_110131_INTRON_310_615 intron/exon 30.640355 182.534865 30.640355 152.89451 91.7674325 1.962688581 0.040883 152 69 SH7099 7099 snR63 snR63 1 23 44.312448 174.624354 109.468401 2.039288774 0.327867 152 70 SH5046 5046 snR10 3' 34.689994 185.442857 110.0664255 2.041654863 0.01374 152 71 SH6558 6558 snR46 3' 34.797595 186.68705 110.7423225 2.044313627 0.006167 152 72 SH13627 13627 MT ATP6 ATP6 28.059259 167.751852 28.059259 140.692593 84.375926 1.926218552 -0.077345 152 73 SH2461 2461 Phe5 tRNA 76 90 293.70065 424.403626 359.052138 2.555157517 0.412234 152 74 SH1148 1148 His1 5' flank 31.202876 166.34836 98.775618 1.994649756 0.002487 152 75 SH11742 11742 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5596 5611 1559.904716 1883.214376 1721.559546 3.235922049 0.094163 152 76 SH3123 3123 Ser4 tRNA 21 33 35.399991 176.670457 106.035224 2.025450158 0.119786 152 77 SH9664 9664 RUF4 RUF4 96 108 35.531329 175.696335 105.613832 2.0237208 0.133552 152 78 SH5664 5664 snR34 snR34 241 257 33.65854 159.101252 96.379896 1.983986453 0.189362 152 79 SH4965 4965 snR9 3' 31.76389 150.443733 91.1038115 1.959536547 0.12871 152 80 SH3152 3152 Ser4 3' flank 41.925263 179.635302 110.7802825 2.044462468 0.229324 152 81 SH8878 8878 LSR1 / U2 RNA U2 1031 1043 30.92186 177.270178 104.096019 2.017434121 -0.079033 152 82 SH21305 21305 YPL218W spliced 34.010462 166.947204 100.478833 2.002074582 0.159899 152 83 SH16382 16382 YER007C-A_5_166884_166236_INTRON_12_114 intron 30.020125 177.531854 30.020125 148.511729 89.265927 1.950685719 0.022004 152 84 SH17314 17314 YHR203C_8_505526_504472_INTRON_15_283 intron 34.119426 196.299577 34.119426 163.180151 98.6497885 1.994096158 0.189066 152 85 SH15607 15607 YBR119W_2_479296_480281_INTRON_9_97 intron 30.11766 177.147276 30.11766 148.029616 89.073638 1.94974919 0.03137 152 86 SH3984 3984 RNase MRP 336-340 + 3' 336 32.203464 165.424803 98.8141335 1.994819067 0.067149 152 87 SH6811 6811 snR52 5' 32.256899 174.4566 103.3567495 2.014338843 0.016238 152 88 SH8955 8955 snR17a / U3a U3a 61 80 30.255655 192.058866 111.1572605 2.045937835 -0.209253 152 89 SH16669 16669 YFR032C-A_6_223758_223245_INTRON_1_331 intron 35.357741 218.173374 35.357741 183.815633 109.586687 2.039757798 0.051453 152 90 SH8253 8253 snoRNA cluster4 5' 36.329686 253.65183 36.329686 218.322144 127.325915 2.104916806 -0.301714 152 91 SH1041 1041 Gly3 5' flank 30.127601 163.055864 96.5917325 1.984939956 -0.046265 152 92 SH947 947 Gly1 5' flank - tRNA2 2 29.985115 155.844793 92.914954 1.968085616 -0.019461 152 93 SH9425 9425 RUF2 5' 29.801942 151.141688 90.471815 1.956513303 -0.007354 152 94 SH9039 9039 snR17a / U3a 481-490 + 3' 481 33.582011 163.841703 98.711857 1.994369322 0.155277 152 95 SH10077 10077 RUF6 RUF6 231 247 31.36193 197.596138 114.479034 2.058725956 -0.214196 152 96 SH15749 15749 YCR031C_3_178212_177492_INTRON_8_314 intron 31.151628 202.547507 31.151628 172.395879 101.7737535 2.007635792 -0.036866 152 97 SH13420 13420 MT COX1 intronic 30.972527 190.502501 30.972527 160.529974 95.7512505 1.981144455 0.023783 152 98 SH19537 19537 CBP1 1.2 32.781482 183.072359 107.9269205 2.033129785 -0.032338 152 99 SH18340 18340 YML124C_13_23684_22049_INTRON_26_323 intron 32.68068 190.407374 32.68068 158.726694 95.703687 1.980928669 0.136642 152 100 SH10730 10730 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 536 551 32.622903 168.534514 100.5787085 2.002506055 0.072418 152 101 SH15099 15099 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 29.69125 197.367563 29.69125 168.676313 99.1837815 1.996440662 -0.104462 152 102 SH18014 18014 YLR287C-A_12_713158_712537_INTRON_4_433 intron/exon 30.663724 174.413103 30.663724 144.749379 87.7065515 1.943032035 0.086813 152 103 SH9083 9083 snR14 / U4 RNA U4 31 45 32.630742 167.684696 100.157719 2.000684425 0.078003 152 104 SH16894 16894 YGL226C-A_7_73156_72747_INTRON_22_170 exon/intron 30.710184 197.920192 30.710184 168.210008 99.460096 1.997648874 -0.038573 153 2 SH4212 4212 telomerase RNA telomerase 96 113 27.989171 144.170797 86.079984 1.934902178 -0.101644 153 3 SH6278 6278 snR42 snR42 171 188 56.63915 183.465126 120.052138 2.079369899 0.370556 153 4 SH4467 4467 telomerase RNA 3' 29.037936 156.890275 92.9641055 1.968315295 -0.09149 153 5 SH8693 8693 LSR1 / U2 RNA U2 106 122 58.598374 206.800265 132.6993195 2.122868696 0.134592 153 6 SH13275 13275 MT COX1 Exon 5a 32.06037 200.030132 32.06037 168.969762 100.515066 2.002231162 0.037281 153 7 SH2864 2864 Pro7 3' flank 36.038991 187.978884 112.0089375 2.049252678 0.023411 153 8 SH14185 14185 MT COB Exon6 27.838248 152.962546 27.838248 126.124298 76.981273 1.886385089 -0.005102 153 9 SH4323 4323 telomerase RNA telomerase 651 669 27.655513 141.033036 84.3442745 1.926055607 -0.109753 153 10 SH16644 16644 YFR031C-A_6_221405_220494_INTRON_5_151 5' exon 31.353381 208.381913 31.353381 178.028532 104.6909565 2.019909168 -0.057463 153 11 SH11509 11509 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4431 4448 31785.22759 29704.12286 30744.67522 4.48776991 -0.356397 153 12 SH11206 11206 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2916 2936 42.115631 163.640785 102.878208 2.012323391 0.435629 153 13 SH6987 6987 snR60 snR60 16 32 64.363772 231.91793 148.140851 2.170674835 -0.03101 153 14 SH6438 6438 snR45 snR45 36 54 33.325762 147.239876 90.282819 1.955605111 0.245763 153 15 SH5424 5424 snR31 snR31 186 202 32.852314 183.441137 108.1467255 2.034013374 -0.033148 153 16 SH10848 10848 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1126 1146 59.888202 192.029483 125.9588425 2.100228661 0.308702 153 17 SH5662 5662 snR34 snR34 231 246 28.570942 156.425154 92.498048 1.966132568 -0.122732 153 18 SH4282 4282 telomerase RNA telomerase 446 461 33.802402 179.298771 106.5505865 2.027555845 0.039547 153 19 SH4431 4431 telomerase RNA telomerase 1191 1207 26.560523 174.564529 100.562526 2.002436174 -0.363035 153 20 SH14060 14060 MT COB Cytbi4 28.359339 187.506852 28.359339 160.147513 94.253426 1.974297145 -0.157211 153 21 SH12293 12293 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 52.739374 230.153658 52.739374 178.414284 115.576829 2.062870775 0.38603 153 22 SH8117 8117 snoRNA cluster 3; 5'/snR41 37.562571 194.891746 37.562571 158.329175 97.945873 1.990986141 0.375781 153 23 SH6158 6158 snR39B 3' 32.304934 141.085136 86.695035 1.937994226 0.21579 153 24 SH11656 11656 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5166 5179 16767.7372 14815.85628 15791.79674 4.198431545 -0.080124 153 25 SH21737 21737 copy of SH12342 34.499024 173.157219 103.8281215 2.016314997 0.122797 153 26 SH15991 15991 YDL136W_4_217600_218367_INTRON_4_408 intron 34.687072 220.797792 34.687072 187.11072 110.898896 2.044927223 -0.001469 153 27 SH11397 11397 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3871 3888 6594.616986 4574.954891 5584.785939 3.747006532 0.581746 153 28 SH14001 14001 MT COB intronic 29.42088 208.651121 29.42088 180.230241 104.8255605 2.020467193 -0.188877 153 29 SH6685 6685 snR49 5' 31.371661 153.737092 92.5543765 1.96639696 0.085381 153 30 SH1870 1870 Leu9 91-101 + 3' flank 91 31.422438 148.684253 90.0533455 1.954499852 0.11581 153 31 SH17162 17162 YHR016C_8_138446_136872_INTRON_48_215 intron 35.167497 206.314136 35.167497 172.146639 103.657068 2.01559892 0.155664 153 32 SH4788 4788 snR5 snR5 111 132 33.261694 155.509817 94.3857555 1.974906456 0.190387 153 33 SH12036 12036 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7066 7089 25.748802 113.560907 69.6548545 1.842951389 -0.077847 153 34 SH1550 1550 Leu4 5' flank 38.679477 170.828981 104.754229 2.020171565 0.281789 153 35 SH18902 18902 YOL120C_15_94401_93394_INTRON_113_559 intron 33.01108 199.464763 33.01108 167.453683 100.2323815 2.001008049 0.101067 153 36 SH15317 15317 YAL003W_1_142172_143158_INTRON_81_446 intron 34.78928 193.008994 34.78928 159.219714 97.004497 1.986791868 0.250375 153 37 SH20853 20853 YLR061W spliced 36.602309 192.374819 114.488564 2.058762108 -0.01596 153 38 SH4781 4781 snR5 snR5 76 90 55.158477 221.259703 138.20909 2.140536607 -0.055035 153 39 SH7963 7963 snoRNA cluster 2 5' 32.994502 200.479699 32.994502 168.485197 100.7398495 2.003201298 0.093888 153 40 SH5999 5999 snR37 5' 36.831806 172.553467 104.6926365 2.019916137 0.207073 153 41 SH3991 3991 RNase MRP 3' 31.397602 166.426295 98.9119485 1.995248757 0.013641 153 42 SH4075 4075 SRP RNA SRP RNA 266 280 10765.03555 14889.8441 12827.43983 4.108139986 -0.661792 153 43 SH19719 19719 Negative Control 31.69105 160.294159 95.9926045 1.982237775 0.069174 153 44 SH5364 5364 snR30 3' 28.026448 162.690359 95.3584035 1.979358971 -0.194477 153 45 SH407 407 Asn1 3' flank 31.880078 170.445427 101.1627525 2.005020637 0.017904 153 46 SH4590 4590 U3b (snR17b) 3' 30.023528 160.098094 95.060811 1.978001515 -0.038617 153 47 SH15934 15934 YDL115C_4_255042_253994_INTRON_1_88 exon/intron 31.933351 219.363046 31.933351 188.429695 110.181523 2.042108771 -0.112411 153 48 SH21591 21591 copy of SH6252 155.056576 359.286808 257.171692 2.410223162 -0.018035 153 49 SH18451 18451 YMR143W_13_551927_552902_INTRON_25_568 5' exon 50.97737 257.053573 50.97737 207.076203 129.0267865 2.110679881 0.032068 153 50 SH21210 21210 YOR096W spliced 31.965903 184.746913 108.356408 2.0348546 -0.077884 153 51 SH9903 9903 RUF5-1 RUF5-1 321 340 32.014042 152.303895 92.1589685 1.964537605 0.135034 153 52 SH10867 10867 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1221 1237 111.407149 256.657099 184.032124 2.264893639 0.268755 153 53 SH11472 11472 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4246 4264 2970.869723 3196.079805 3083.474764 3.489040398 0.113509 153 54 SH19357 19357 YPL249C-A_16_76239_75699_INTRON_17_254 intron/exon 30.356271 166.705544 30.356271 137.349273 83.852772 1.923517424 0.107114 153 55 SH765 765 Gln4 3' flank 28.525604 136.055572 82.290588 1.915350166 -0.016512 153 56 SH18060 18060 YLR333C_12_796335_795573_INTRON_1_423 3' exon 36.31938 230.041021 36.31938 194.721641 115.5205105 2.062659099 -0.047858 153 57 SH21769 21769 copy of SH13809 28.666241 141.198256 84.9322485 1.929072622 -0.035067 153 58 SH6912 6912 snR58 5' 32.581545 143.919174 88.2503595 1.945716483 0.217372 153 59 SH1410 1410 Leu1 3' flank 26.801851 123.358507 75.080179 1.875525299 -0.064755 153 60 SH15058 15058 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.741257 201.750263 28.741257 174.009006 101.3751315 2.005931431 -0.196876 153 61 SH14977 14977 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.727987 181.411828 28.727987 153.683841 91.205914 1.960023 -0.097033 153 62 SH20408 20408 YFR032C-A spliced 48.084384 227.273161 137.6787725 2.138866985 -0.212646 153 63 SH3307 3307 Thr2 3' flank 28.671333 154.032219 91.351776 1.960716995 -0.102964 153 64 SH7994 7994 snoRNA cluster 2 intergenic 30.575178 206.914025 30.575178 177.338847 103.9570125 2.01685379 -0.100504 153 65 SH8190 8190 snoRNA cluster 3; snR70/intergenic 28.63421 145.99426 28.63421 118.36005 73.49713 1.866270381 0.105533 153 66 SH1221 1221 Ile1 66-74 + 3' flank 66 32.504621 139.889524 86.1970725 1.935492516 0.235472 153 67 SH8768 8768 LSR1 / U2 RNA U2 481 493 114.895059 268.239822 191.5674405 2.282321697 0.214845 153 68 SH3513 3513 Tyr1 3' flank 29.704569 149.296362 89.5004655 1.951825294 -0.004194 153 69 SH3216 3216 Thr1 5' flank 28.812002 139.87568 84.343841 1.926053375 -0.017051 153 70 SH10308 10308 RUF7 RUF7 151 163 102.256541 262.438491 182.347516 2.260899852 0.142744 153 71 SH16953 16953 YGR029W_7_543547_544199_INTRON_87_169 5' exon 40.71939 249.088548 40.71939 209.369158 125.044274 2.097063809 -0.137567 153 72 SH15163 15163 MT tRNA Val tRNA 31.027472 182.501513 31.027472 152.474041 91.7507565 1.962609654 0.06917 153 73 SH10461 10461 RUF8 RUF8 231 245 31.113976 170.41492 100.764448 2.00330733 -0.027385 153 74 SH20448 20448 YGL103W spliced 41.065243 187.492369 114.278806 2.057965694 0.11971 153 75 SH4074 4074 SRP RNA SRP RNA 261 275 5072.12855 4692.843119 4882.485835 3.688640992 0.201134 153 76 SH13887 13887 MT COB intronic 29.400755 183.300901 29.400755 154.900146 92.1504505 1.964497463 -0.055379 153 77 SH3415 3415 Trp1 5' flank 31.48268 155.726018 93.604349 1.971296027 0.0823 153 78 SH7156 7156 snR63 3' 29.592655 152.46301 91.0278325 1.959174202 -0.029031 153 79 SH442 442 Asp1 tRNA 31 43 33.688464 171.144601 102.4165325 2.010370068 0.114044 153 80 SH13114 13114 MT COX1 COX1ai3 33.785843 183.889654 33.785843 151.103811 92.444827 1.965882614 0.248818 153 81 SH21878 21878 copy of SH18253 29.847371 145.449733 87.648552 1.942744746 0.026851 153 82 SH19007 19007 YOR182C_15_678792_678190_INTRON_4_414 5' exon 31.925374 205.801932 31.925374 174.876558 103.400966 2.014524596 -0.005517 153 83 SH3724 3724 Val3 3' flank 29.966543 164.851028 97.4087855 1.988598129 -0.066259 153 84 SH15811 15811 YDL061C_4_341182_340627_INTRON_1_408 intron 32.043786 196.802203 32.043786 165.758417 98.9011015 1.995201129 0.055809 153 85 SH14041 14041 MT COB Cytbi4 30.079561 188.125137 30.079561 159.045576 94.5625685 1.97571926 -0.029404 153 86 SH19745 19745 Negative Control 70.939262 242.650979 156.7951205 2.195332543 -0.040516 153 87 SH7403 7403 snR69 5' 30.200889 152.393128 91.2970085 1.960456547 0.013563 153 88 SH3079 3079 Ser3 91-101 + 3' flank 91 36.363111 164.162981 100.263046 2.001140894 0.275846 153 89 SH5266 5266 snR30 snR30 181 193 36.382751 185.018244 110.7004975 2.044149573 0.064702 153 90 SH17512 17512 YJL136C_10_156971_156248_INTRON_25_484 intron 30.236355 176.703608 30.236355 147.467253 88.851804 1.94866625 0.042616 153 91 SH15951 15951 YDL130W_4_229906_230527_INTRON_115_415 5' exon 30.157803 196.436846 30.157803 167.279043 98.718423 1.994398209 -0.066865 153 92 SH12637 12637 MT_15S MT_15S 56.399572 290.00971 56.399572 234.610138 145.504855 2.162877484 -0.162601 153 93 SH13780 13780 MT COB intronic 29.850849 193.665618 29.850849 164.814769 97.332809 1.988259257 -0.074108 153 94 SH13334 13334 MT COX1 COX1-ai5a 27.650515 173.326511 27.650515 146.675996 87.1632555 1.940333443 -0.140707 153 95 SH11729 11729 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5531 5550 903.68768 679.582898 791.635289 2.898525146 1.018024 153 96 SH17760 17760 YKL157W_11_154993_158183_INTRON_282_664 intron 34.148383 184.985376 34.148383 151.836993 92.992688 1.968448801 0.263853 153 97 SH3787 3787 RNaseP 5' flank 31.002236 158.442826 94.722531 1.976453294 0.036374 153 98 SH18130 18130 YLR388W_12_898158_898821_INTRON_1_488 3' exon 38.652399 257.841536 38.652399 220.189137 129.420768 2.112003973 -0.28398 153 99 SH21310 21310 YPL241C spliced 34.631005 196.45649 115.5437475 2.062746449 -0.100854 153 100 SH18610 18610 YNL069C_14_494998_493953_INTRON_29_477 intron 32.621894 216.173656 32.621894 184.551762 108.586828 2.035777147 -0.051766 153 101 SH1406 1406 Leu1 101-115 + 3' flank 101 44.265832 192.899396 118.582614 2.07402102 0.099781 153 102 SH8256 8256 snoRNA cluster4 5' 30.664677 197.794651 30.664677 168.129974 99.3973255 1.997374699 -0.040862 153 103 SH662 662 Gln2 3' flank 30.692518 142.29954 86.496029 1.93699617 0.102589 153 104 SH16327 16327 YDR471W_4_1401759_1402553_INTRON_32_415 intron 32.68913 208.999492 32.68913 177.310362 104.999746 2.021188248 0.018247 154 2 SH3658 3658 Val2 tRNA 31 46 89.692548 234.436356 162.064452 2.209687765 0.237883 154 3 SH1300 1300 Ile2 3' flank 27.945009 149.406723 88.675866 1.947805438 -0.13277 154 4 SH6435 6435 snR45 snR45 21 42 55.44339 209.402791 132.4230905 2.121963719 0.066 154 5 SH12076 12076 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7266 7289 40.124733 190.282311 115.203522 2.061465757 0.072051 154 6 SH20651 20651 YIL004C spliced 46.170707 212.783292 129.4769995 2.112192627 -0.094857 154 7 SH16136 16136 YDR092W_4_629869_630598_INTRON_31_298 5' exon 29.893896 189.037852 29.893896 160.143956 95.018926 1.977810117 -0.047829 154 8 SH9141 9141 snR7 U5 RNA 5' 28.767895 141.726516 85.2472055 1.930680151 -0.030522 154 9 SH14626 14626 MT 21S rRNA Sce1 endonuc 27.582227 194.773213 27.582227 168.190986 97.8866065 1.990723273 -0.254571 154 10 SH21356 21356 YPR187W spliced 407.780569 684.837207 546.308888 2.737438266 0.010116 154 11 SH1608 1608 Leu5 5' flank 30.890795 196.067208 113.4790015 2.054915506 -0.219221 154 12 SH9162 9162 snR7 U5 RNA U5 81 96 30.449043 156.242013 93.345528 1.970093517 0.01034 154 13 SH13474 13474 MT COX1 intronic 33.766011 219.597351 33.766011 186.83134 110.2986755 2.042570297 -0.031187 154 14 SH20918 20918 YLR344W spliced 38.849389 158.697777 98.773583 1.994640808 0.412209 154 15 SH12470 12470 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 30215.52527 47486.41105 30215.52527 17271.88578 23743.70553 4.375548497 0.439098 154 16 SH21793 21793 copy of SH14653 34.226895 177.198833 105.712864 2.024127839 0.074377 154 17 SH10944 10944 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1606 1621 33.945827 150.838287 92.392057 1.965634636 0.259436 154 18 SH13048 13048 MT COX1 COX1ai2 30.193271 170.594443 30.193271 141.401172 85.7972215 1.933473224 0.073117 154 19 SH16478 16478 YER102W_5_362729_363698_INTRON_1_360 intron 28.355423 211.027169 28.355423 183.671746 106.0135845 2.025361519 -0.27705 154 20 SH20223 20223 YDR092W spliced 28.38809 177.406815 102.8974525 2.012404623 -0.239637 154 21 SH10777 10777 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 771 789 28.479904 153.41726 90.948582 1.958795932 -0.113626 154 22 SH18678 18678 YNL112W_14_413636_416278_INTRON_1274_2275 intron 34.03732 243.132244 34.03732 210.094924 122.066122 2.086595147 -0.259265 154 23 SH12245 12245 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.407445 182.741224 32.407445 151.333779 91.870612 1.963176609 0.165558 154 24 SH17475 17475 YJL001W_10_434855_435618_INTRON_66_181 intron 34.430531 181.77879 34.430531 148.348259 91.389395 1.960895802 0.302852 154 25 SH15664 15664 YBR189W_2_604466_605466_INTRON_8_420 intron 32.793882 204.967095 32.793882 173.173213 102.9835475 2.012767848 0.054603 154 26 SH7286 7286 snR66 5' 32.976059 186.597858 109.7869585 2.040550754 -0.057436 154 27 SH1395 1395 Leu1 tRNA-intron 46 58 31.27618 175.589452 103.432816 2.014658349 -0.048056 154 28 SH15039 15039 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 31.395256 213.573545 31.395256 183.178289 107.2867725 2.030546181 -0.085073 154 29 SH3310 3310 Thr2 3' flank 27.735563 143.55605 85.6458065 1.932706103 -0.117484 154 30 SH9406 9406 RUF1 3' 27.765494 137.949337 82.8574155 1.918331383 -0.084165 154 31 SH5138 5138 snR11 3' 359.651832 612.740025 486.1959285 2.686811318 0.040059 154 32 SH18293 18293 YML073C_13_124172_123227_INTRON_16_430 intron 46.422338 264.984337 46.422338 219.561999 132.9921685 2.123826067 -0.160964 154 33 SH3173 3173 Ser5 5' flank - tRNA5 5 33.222684 197.860629 115.5416565 2.06273859 -0.147407 154 34 SH6418 6418 snR45 5' 33.118034 172.164177 102.6411055 2.011321321 0.078928 154 35 SH12565 12565 MT_15S MT_15S 36.72593 225.327168 36.72593 189.601238 113.163584 2.053706694 0.018054 154 36 SH18812 18812 YNL302C_14_62942_61957_INTRON_21_571 intron 32.943853 200.905942 32.943853 168.962089 100.952971 2.004119105 0.088145 154 37 SH2484 2484 Pro1 5' flank 36.610322 189.784942 113.197632 2.053837342 0.013714 154 38 SH8950 8950 snR17a / U3a U3a 36 53 36.64079 174.406494 105.523642 2.023349772 0.182819 154 39 SH11678 11678 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5276 5291 2881.303539 1709.038843 2295.171191 3.360815084 1.055781 154 40 SH16841 16841 YGL178W_7_167356_170575_INTRON_4_643 intron 35.03231 204.429331 35.03231 170.397021 102.7146655 2.011632456 0.168289 154 41 SH3980 3980 RNase MRP RNaseMRP 316 332 35.219134 171.549851 103.3844925 2.0144554 0.163282 154 42 SH9742 9742 RUF4 RUF4 486 503 35.418881 154.157528 94.7882045 1.976754297 0.316731 154 43 SH5625 5625 snR34 snR34 46 65 31.820971 147.89514 89.8580555 1.953557016 0.146277 154 44 SH825 825 Glu1 3' flank 28.159895 143.188438 85.6741665 1.932849888 -0.083508 154 45 SH9866 9866 RUF5-1 RUF5-1 136 157 30.143187 160.019025 95.081106 1.978094225 -0.029962 154 46 SH7600 7600 snR189 snR189 71 86 32.094691 201.085486 116.5900885 2.066661632 -0.216068 154 47 SH21493 21493 copy of SH2041 33.061147 237.604824 135.3329855 2.131403663 -0.551711 154 48 SH21759 21759 copy of SH13391 30.191703 175.720987 102.956345 2.012653117 -0.114787 154 49 SH14147 14147 MT COB intronic 30.18228 177.347273 30.18228 148.164993 89.1736365 1.950236478 0.035077 154 50 SH16118 16118 YDR064W_4_579453_580447_INTRON_22_560 intron 32.092779 186.296508 32.092779 155.203729 93.648254 1.971499685 0.124853 154 51 SH11048 11048 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2126 2143 2526.330193 815.427567 1670.87888 3.22294497 2.044797 154 52 SH18121 18121 YLR388W_12_898158_898821_INTRON_1_488 intron 30.262734 183.989978 30.262734 154.727244 92.494989 1.966118205 0.005495 154 53 SH11401 11401 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3891 3904 49.549551 178.295008 113.9222795 2.056608666 0.347888 154 54 SH20231 20231 YDR139C spliced 32.346588 178.460719 105.4036535 2.022855665 -0.005285 154 55 SH21744 21744 copy of SH12759 42.101499 199.178819 120.640159 2.081491901 -0.00351 154 56 SH3870 3870 RNaseP RNaseP 316 332 30.604748 186.339154 108.471951 2.035317452 -0.148995 154 57 SH14327 14327 MT VAR1 includes 5’ processing site VAR1 28.740967 173.825638 28.740967 146.084671 87.412819 1.941575126 -0.056097 154 58 SH21436 21436 TH296 - bright yellow; WTP_218 30.728593 156.534128 93.6313605 1.971421334 0.027793 154 59 SH8275 8275 snoRNA cluster4 snR67 35.611724 228.425589 35.611724 193.813865 114.7127945 2.05961186 -0.051602 154 60 SH15481 15481 YBL092W_2_45639_46364_INTRON_1_333 5' exon 28.810406 188.588807 28.810406 160.778401 94.7944035 1.976782698 -0.127647 154 61 SH3381 3381 Thr4 5' flank - tRNA8 8 30.725774 146.931636 88.828705 1.948553331 0.078887 154 62 SH5793 5793 snR35 snR35 151 172 28.747964 141.162911 84.9554375 1.929191181 -0.028876 154 63 SH13759 13759 MT COB intronic 28.705497 183.008397 28.705497 155.3029 92.0041985 1.963807646 -0.107148 154 64 SH14951 14951 MT tRNA Met tRNA 28.671292 215.878327 28.671292 188.207035 108.4391635 2.035186159 -0.281123 154 65 SH18045 18045 YLR333C_12_796335_795573_INTRON_1_423 intron 79.128938 329.60393 79.128938 251.474992 165.301965 2.218278016 -0.015486 154 66 SH6235 6235 snR42 5' 34.466097 164.295922 99.3810095 1.997303404 0.201041 154 67 SH9169 9169 snR7 U5 RNA U5 116 132 34.51592 175.713489 105.1147045 2.021663474 0.098655 154 68 SH17527 17527 YJL136C_10_156971_156248_INTRON_25_484 intron/exon 28.776448 182.195913 28.776448 154.419465 91.5979565 1.961885785 -0.097404 154 69 SH8682 8682 LSR1 / U2 RNA U2 51 68 36.644164 188.146305 112.3952345 2.050747898 0.033254 154 70 SH12993 12993 MT COX1 COX1ai2 28.948174 187.845263 28.948174 159.897089 94.4226315 1.9750761 -0.113294 154 71 SH3964 3964 RNase MRP RNaseMRP 236 253 30.988923 152.283002 91.6359625 1.962065946 0.067605 154 72 SH1020 1020 Gly2 3' flank 36.959922 180.330784 108.645353 2.036011155 0.131726 154 73 SH18455 18455 YMR143W_13_551927_552902_INTRON_25_568 intron 37.041905 239.690449 37.041905 203.648544 120.3452245 2.080428861 -0.131546 154 74 SH11448 11448 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4126 4143 49.967122 200.552965 125.2600435 2.097812558 0.088658 154 75 SH17084 17084 YHL001W_8_104270_105084_INTRON_130_527 intron 39.171201 219.478974 39.171201 181.307773 110.239487 2.042337184 0.161069 154 76 SH4873 4873 snR8 snR8 146 160 49.189891 180.587872 114.8888815 2.060278001 0.314509 154 77 SH14858 14858 MT tRNA Ser2; tRNA Arg2 tRNA Ser 31.418945 196.421654 31.418945 166.002709 98.710827 1.99436479 0.017501 154 78 SH7567 7567 snR189 5' 29.521138 126.348684 77.934911 1.891732044 0.11414 154 79 SH4498 4498 U3b (snR17b) U3b 46 63 33.600308 197.374456 115.487382 2.062534536 -0.132383 154 80 SH19157 19157 YPL075W_16_412249_415357_INTRON_9_759 intron 32.695572 229.022351 32.695572 197.326779 115.0111755 2.060740042 -0.162006 154 81 SH13197 13197 MT COX1 Exon4 29.771668 197.450908 29.771668 168.67924 99.225454 1.996623095 -0.099424 154 82 SH16921 16921 YGL251C_7_31636_27921_INTRON_59_210 intron 31.850596 193.500735 31.850596 162.650139 97.2503675 1.987891251 0.063738 154 83 SH10413 10413 RUF8 5' - 11 -9 11 29.903267 180.775614 105.3394405 2.022591007 -0.161545 154 84 SH8403 8403 snoRNA cluster 5 snR190 42.095473 255.874165 42.095473 214.778692 128.4370825 2.108690432 -0.174579 154 85 SH1948 1948 Lys2 5' flank 30.030026 132.077868 81.053947 1.908774168 0.114855 154 86 SH12864 12864 MT COX1 COX1ai1 32.125637 183.455225 32.125637 152.329588 92.2276125 1.964860966 0.142119 154 87 SH19661 19661 SIR1 2.2 32.195157 171.197309 101.696233 2.007304866 0.031817 154 88 SH17330 17330 YIL018W_9_316766_317930_INTRON_5_404 5' exon 30.213949 180.11414 30.213949 150.900191 90.55707 1.956922362 0.022436 154 89 SH11062 11062 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2196 2214 2332.607978 901.700526 1617.154252 3.208751447 1.781756 154 90 SH9914 9914 RUF5-1 RUF5-1 376 398 30.215145 143.820359 87.017752 1.93960786 0.061423 154 91 SH16785 16785 YGL103W_7_310965_311925_INTRON_50_560 intron 30.142011 204.314257 30.142011 175.172246 102.6571285 2.011389112 -0.114688 154 92 SH21361 21361 Ile2_3 spliced 32.036835 162.084916 97.0608755 1.987044204 0.078174 154 93 SH12276 12276 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.84136 198.355194 29.84136 169.513834 99.677597 1.99859756 -0.100067 154 94 SH16882 16882 YGL189C_7_148970_148233_INTRON_1_368 intron 29.635247 178.518381 29.635247 149.883134 89.7591905 1.953078927 -0.012221 154 95 SH7939 7939 snoRNA cluster1 3' 33.379449 183.594185 33.379449 151.214736 92.2970925 1.96518802 0.22545 154 96 SH18789 18789 YNL301C_14_64561_63569_INTRON_113_544 intron 35.107694 203.576504 35.107694 169.46881 102.288252 2.009825757 0.180081 154 97 SH3243 3243 Thr1 71-73 + 3' flank 71 30.969499 168.925255 99.947377 1.999771401 -0.027165 154 98 SH9143 9143 snR7 U5 RNA 5' - 4 -14 4 30.809148 168.027316 99.418232 1.997466036 -0.031455 154 99 SH5073 5073 snR11 5' 31.665775 127.764835 79.715305 1.901541712 0.252433 154 100 SH1965 1965 Lys2 tRNA 26 45 81.289229 198.104724 139.6969765 2.145187007 0.487853 154 101 SH20520 20520 YGR034W spliced 32.545364 166.214661 99.3800125 1.997299047 0.082051 154 102 SH1259 1259 Ile2 5' flank - tRNA7 7 30.620825 157.556976 94.0889005 1.973538394 0.015226 154 103 SH14549 14549 MT 21S rRNA 21S rRNA3 30.658669 197.961007 30.658669 168.302338 99.4805035 1.997737975 -0.042269 154 104 SH10201 10201 RUF6 RUF6 851 873 30.712235 143.354016 87.0331255 1.93968458 0.097941 155 2 SH14679 14679 MT 21S rRNA 21S rRNA4 27.895504 172.279904 27.895504 145.3844 86.639952 1.937718203 -0.115236 155 3 SH17832 17832 YKR094C_11_618384_617630_INTRON_9_376 intron 29.929341 207.829926 29.929341 178.900585 104.414963 2.018762739 -0.149322 155 4 SH17068 17068 YGR214W_7_920570_921783_INTRON_91_545 intron/exon 29.929994 205.130326 29.929994 176.200332 103.065163 2.013111894 -0.133829 155 5 SH11884 11884 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6306 6321 500.397433 469.966792 485.1821125 2.685904781 0.88491 155 6 SH2610 2610 Pro3 tRNA 1 13 1040.565533 1541.100608 1290.833071 3.110870083 -0.117507 155 7 SH10331 10331 RUF7 RUF7 266 283 29.820031 178.681936 104.2509835 2.018080161 -0.15492 155 8 SH1784 1784 Leu8 5' flank 31.696014 205.955505 118.8257595 2.074910599 -0.271422 155 9 SH15708 15708 YBR220C_2_663261_662457_INTRON_302_722 intron 29.497064 206.846729 29.497064 178.349665 103.9233645 2.016713198 -0.173386 155 10 SH9094 9094 snR14 / U4 RNA U4 86 98 62.836483 203.174427 133.005455 2.123869453 0.225196 155 11 SH827 827 Glu2 5' flank 30.816128 156.534203 93.6751655 1.971624469 0.033696 155 12 SH12071 12071 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7241 7259 28.463528 159.239564 93.851546 1.972441431 -0.144994 155 13 SH5891 5891 snR36 5' 26.142741 143.791199 84.96697 1.929250131 -0.242985 155 14 SH4579 4579 U3b (snR17b) 451-462 + 3' 451 31.329518 162.282135 96.8058265 1.985901497 0.035203 155 15 SH10139 10139 RUF6 RUF6 541 553 1033.43115 1539.475043 1286.453097 3.109393957 -0.124754 155 16 SH18798 18798 YNL301C_14_64561_63569_INTRON_113_544 intron 34.202185 214.014526 34.202185 180.812341 107.507263 2.031437805 0.039446 155 17 SH10709 10709 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 431 446 37.553666 168.825757 103.1897115 2.013636398 0.267178 155 18 SH14280 14280 MT VAR1 includes 5’ processing site VAR1 32.008088 194.837603 32.008088 163.829515 97.9188015 1.990866089 0.065618 155 19 SH8939 8939 snR17a / U3a 5' 30.189722 143.020655 86.6051885 1.937543911 0.063995 155 20 SH13214 13214 MT COX1 COX1-ai4 30.250264 206.165571 30.250264 176.915307 103.5827855 2.015287586 -0.118046 155 21 SH20395 20395 YFL039C spliced 35.792043 159.863226 97.8276345 1.990461552 0.299398 155 22 SH13450 13450 MT COX1 intronic 26.911472 163.952457 26.911472 138.040985 82.4762285 1.916328793 -0.149558 155 23 SH11376 11376 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3766 3782 26039.80667 24895.4708 25467.63874 4.405988681 -0.334597 155 24 SH12040 12040 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7086 7103 36.438971 180.219431 108.329201 2.03474554 0.120877 155 25 SH8824 8824 LSR1 / U2 RNA U2 761 782 37.588127 166.40496 101.9965435 2.008585454 0.292648 155 26 SH21852 21852 copy of SH17602 31.282092 144.454767 87.8684295 1.943832864 0.129898 155 27 SH19482 19482 ADH1 33.293169 168.183158 100.7381635 2.003194029 0.112557 155 28 SH7417 7417 snR69 5' - 7 -14 7 30.59378 149.277662 89.935721 1.953932221 0.05712 155 29 SH1488 1488 Leu3 5' flank 27.839053 127.234204 77.5366285 1.889506913 -0.012304 155 30 SH13703 13703 MT tRNAGlu (and 5' processing site for COB) 5' / tRNA 27.850458 185.518863 27.850458 158.668405 93.2594315 1.969692764 -0.187271 155 31 SH18489 18489 YMR194W_13_651144_651909_INTRON_17_479 intron 39.082701 244.158556 39.082701 206.075855 122.579278 2.088417059 -0.125956 155 32 SH7113 7113 snR63 snR63 71 88 31.495238 169.130753 100.3129955 2.001357199 0.003068 155 33 SH7063 7063 snR62 3' 31.392294 159.994638 95.693466 1.980882285 0.053368 155 34 SH10375 10375 RUF7 RUF7 486 500 36.858703 175.442959 106.150831 2.025923398 0.179924 155 35 SH8823 8823 LSR1 / U2 RNA U2 756 777 25.622524 125.942055 75.7822895 1.879567722 -0.174348 155 36 SH15240 15240 MT tRNA fMet 5' 31.099699 181.558495 31.099699 151.458796 91.2792475 1.960372051 0.079407 155 37 SH21608 21608 copy of SH6884 32.920105 161.596692 97.2583985 1.987927114 0.132081 155 38 SH17752 17752 YKL157W_11_154993_158183_INTRON_282_664 intron 51.492908 279.748262 51.492908 229.255354 140.374131 2.147287081 -0.182709 155 39 SH20828 20828 YKR094C spliced 33.056271 167.306605 100.181438 2.000787261 0.104517 155 40 SH3242 3242 Thr1 66-73 + 3' flank 66 31.351177 149.074326 90.2127515 1.955267929 0.108976 155 41 SH6319 6319 snR42 3' 29.66369 162.744264 96.203977 1.983193026 -0.07692 155 42 SH21087 21087 YMR292W spliced 33.621952 162.148031 97.8849915 1.990716107 0.168056 155 43 SH20931 20931 YLR388W spliced 31.921026 183.907184 107.914105 2.033078213 -0.071879 155 44 SH13179 13179 MT COX1 Exon4 26.359537 176.224942 26.359537 150.865405 88.612471 1.947494847 -0.263355 155 45 SH20501 20501 YGR001C spliced 30.263728 151.395766 90.829747 1.958228104 0.023196 155 46 SH19263 19263 YPL143W_16_282121_282969_INTRON_20_544 intron 34.144706 273.691971 34.144706 240.547265 137.3459855 2.13781597 -0.560483 155 47 SH17852 17852 YKR095W-A_11_625432_625839_INTRON_39_113 5' exon 94.860102 391.58897 94.860102 297.728868 196.294485 2.292908098 -0.171575 155 48 SH17032 17032 YGR183C_7_859471_859058_INTRON_4_216 intron 30.309155 175.75132 30.309155 146.442165 88.37566 1.94633267 0.053258 155 49 SH15595 15595 YBR089C-A_2_426588_426148_INTRON_1_114 intron 32.20084 162.984515 32.20084 131.783675 81.9922575 1.913772844 0.263587 155 50 SH21204 21204 YOL127W spliced 34.102327 170.967962 102.5351445 2.010872748 0.130414 155 51 SH2675 2675 Pro4 tRNA-intron 41 57 32.199598 164.521453 98.3605255 1.99282084 0.072487 155 52 SH7252 7252 snR65 snR65 36 53 30.325119 158.223586 94.2743525 1.974393558 -0.008333 155 53 SH3752 3752 Val4 5' flank - tRNA1 1 30.391702 154.525333 92.4585175 1.965946926 0.015378 155 54 SH17439 17439 YIL133C_9_99416_98527_INTRON_32_321 intron 30.47897 207.222609 30.47897 177.743639 104.1113045 2.017497888 -0.108712 155 55 SH10360 10360 RUF7 RUF7 411 428 32.507983 181.774563 107.141273 2.029956802 -0.030369 155 56 SH21368 21368 Leu1_5 spliced 30.671172 182.512818 106.591995 2.027724591 -0.123863 155 57 SH14804 14804 "MT tRNAs (Lys, Arg1, Gly)" intergenic 28.810286 186.29925 28.810286 158.488964 93.649625 1.971506043 -0.116037 155 58 SH467 467 Asp1 3' flank 28.862795 147.974386 88.4185905 1.946543587 -0.057205 155 59 SH18870 18870 YNR053C_14_723108_721117_INTRON_811_1341 intron 28.886322 190.937659 28.886322 163.051337 95.9688295 1.982130198 -0.133558 155 60 SH18440 18440 YMR142C_13_551206_550205_INTRON_5_406 intron 34.720343 221.592596 34.720343 187.872253 111.296298 2.046480719 -0.007175 155 61 SH1934 1934 Lys1 3' flank 26.904553 136.024346 81.4644495 1.910968127 -0.137891 155 62 SH11934 11934 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6556 6571 38.508659 185.913316 112.2109875 2.050035384 0.094368 155 63 SH5839 5839 snR35 snR35 381 393 63.745464 242.557339 153.1514015 2.185120975 -0.130984 155 64 SH16762 16762 YGL087C_7_346902_346404_INTRON_12_96 intron 30.635618 194.831134 30.635618 165.195516 97.915567 1.990851743 -0.024745 155 65 SH15794 15794 YDL061C_4_341182_340627_INTRON_1_408 5' exon 28.684237 187.688588 28.684237 160.004351 94.344294 1.974715639 -0.132846 155 66 SH17198 17198 YHR021C_8_148660_147862_INTRON_4_553 intron 30.631798 186.1245 30.631798 156.492702 93.56225 1.971100657 0.02146 155 67 SH9800 9800 RUF4 776-788 + 3' 776 30.682491 187.354958 109.0187245 2.037501097 -0.150627 155 68 SH1258 1258 Ile2 5' flank - tRNA2 2 28.820565 151.749699 90.285132 1.955616237 -0.080096 155 69 SH5865 5865 snR35 snR35 511 528 30.858821 168.979893 99.919357 1.999649631 -0.034187 155 70 SH8157 8157 snoRNA cluster 3; intergenic/snR70 34.86941 174.063685 34.86941 140.194275 87.5318425 1.94216607 0.379453 155 71 SH6657 6657 snR48 111-113 + 3' 111 30.065076 161.799855 95.9324655 1.981965606 -0.044312 155 72 SH17266 17266 YHR123W_8_354817_356083_INTRON_51_141 5' exon 29.150802 184.619931 29.150802 156.469129 92.8099655 1.967594611 -0.081262 155 73 SH18321 18321 YML085C_13_99400_97941_INTRON_26_141 intron 31.16739 201.799578 31.16739 171.632188 101.399789 2.006037051 -0.03141 155 74 SH5724 5724 snR34 541-550 + 3' 541 29.23894 159.286192 94.262566 1.974339258 -0.089452 155 75 SH17924 17924 YLR078C_12_286560_285737_INTRON_4_92 intron 35.199419 210.908486 35.199419 176.709067 105.954243 2.025118353 0.112611 155 76 SH15585 15585 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.324296 179.827552 29.324296 151.503256 90.413776 1.956234607 -0.042821 155 77 SH2349 2349 Phe3 tRNA 71 87 72.158442 220.431483 146.2949625 2.165229372 0.169172 155 78 SH19884 19884 Negative Control 29.456349 160.030987 94.743668 1.976550194 -0.077857 155 79 SH8783 8783 LSR1 / U2 RNA U2 556 573 28.54213 142.981707 85.7619185 1.933294488 -0.053987 155 80 SH21133 21133 YNL147W spliced 223.402362 381.662252 302.532307 2.480771759 0.278381 155 81 SH19001 19001 YOR122C_15_552886_552297_INTRON_14_222 intron 29.696327 194.520083 29.696327 165.823756 97.7600415 1.990161377 -0.089823 155 82 SH816 816 Glu1 3' flank 29.768528 143.796305 86.7824165 1.938431739 0.03019 155 83 SH6635 6635 snR48 snR48 1 20 62.121229 196.586018 129.3536235 2.111778599 0.286611 155 84 SH16654 16654 YFR031C-A_6_221405_220494_INTRON_5_151 3' exon 31.918209 215.032803 31.918209 184.114594 108.0164015 2.033489705 -0.073887 155 85 SH21671 21671 copy of SH9621 29.972864 150.730903 90.3518835 1.95593721 0.006719 155 86 SH10917 10917 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1471 1487 118.304205 264.35679 191.3304975 2.281784201 0.271506 155 87 SH20144 20144 YDL108W spliced 1010.814818 1053.07233 1031.943574 3.013655951 0.453135 155 88 SH15345 15345 YBL018C_2_186436_185960_INTRON_48_122 exon/intron 30.162041 175.720477 30.162041 146.558436 88.3602385 1.946256879 0.042517 155 89 SH8655 8655 LSR1 / U2 RNA 5' 30.183532 141.413732 85.798632 1.933480363 0.072369 155 90 SH13766 13766 MT COB intronic 30.161503 200.27232 30.161503 171.110817 100.63616 2.002754057 -0.089646 155 91 SH3182 3182 Ser5 tRNA 31 47 38.201865 170.444824 104.3233445 2.018381502 0.271573 155 92 SH3196 3196 Ser5 3' flank 29.958008 166.47206 98.215034 1.992177971 -0.074777 155 93 SH4313 4313 telomerase RNA telomerase 601 620 29.781538 138.594451 84.1879945 1.925250164 0.059824 155 94 SH5665 5665 snR34 snR34 246 263 29.571466 147.768596 88.670031 1.94777686 -0.005182 155 95 SH17639 17639 YJR145C_10_702761_701720_INTRON_15_270 5' exon 38.251293 231.735455 38.251293 194.484162 116.3677275 2.065832553 -0.008534 155 96 SH12655 12655 MT_15S MT_15S 31.089811 197.906666 31.089811 167.816855 99.453333 1.997619342 -0.013229 155 97 SH4314 4314 telomerase RNA telomerase 606 624 30.882516 201.265151 116.0738335 2.064734328 -0.263695 155 98 SH17433 17433 YIL133C_9_99416_98527_INTRON_32_321 intron 32.657025 224.778744 32.657025 193.121719 112.889372 2.052653057 -0.127071 155 99 SH14677 14677 MT 21S rRNA 21S rRNA4 30.600232 188.517853 30.600232 158.917621 94.7589265 1.976620132 0.006864 155 100 SH17925 17925 YLR078C_12_286560_285737_INTRON_4_92 intron 32.465747 194.74347 32.465747 163.277723 97.871735 1.990657287 0.095585 155 101 SH12941 12941 MT COX1 COX1ai2 30.516179 235.368945 30.516179 205.852766 118.1844725 2.072560421 -0.316023 155 102 SH18672 18672 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.602437 187.586332 28.602437 159.983895 94.293166 1.974480218 -0.138669 155 103 SH17337 17337 YIL018W_9_316766_317930_INTRON_5_404 intron 30.583876 170.293203 30.583876 140.709327 85.6466015 1.932710135 0.104011 155 104 SH242 242 Arg3 66-72 + 3' flank 66 3' flank 32.601026 153.620249 93.1106375 1.9689993 0.165303 156 2 SH10827 10827 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1021 1040 2087.602432 1662.691831 1875.147132 3.27303535 0.673024 156 3 SH17421 17421 YIL111W_9_155219_155762_INTRON_2_89 intron 27.880524 186.405807 27.880524 159.525283 93.7029035 1.971753048 -0.189395 156 4 SH20963 20963 YML025C spliced 29.892086 159.696164 94.794125 1.976781422 -0.045686 156 5 SH2147 2147 Met1 3' flank 37.950514 166.743938 102.347226 2.010076076 0.300708 156 6 SH7341 7341 snR68 5' 29.82769 151.976912 90.902301 1.958574877 -0.010026 156 7 SH20617 20617 YHR097C spliced 31.755725 186.719569 109.237647 2.038372337 -0.103709 156 8 SH12853 12853 MT COX1 COX1ai1 47.63218 253.283835 47.63218 206.651655 127.1419175 2.104288757 -0.009267 156 9 SH20744 20744 YJL205C-A spliced 27.438669 153.794562 90.6166155 1.957207837 -0.193837 156 10 SH14988 14988 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 33.077129 212.135247 33.077129 180.058118 106.5676235 2.027625281 0.006432 156 11 SH7881 7881 snoRNA cluster1 snR73 32.687016 204.168558 32.687016 172.481542 102.584279 2.01108081 0.052568 156 12 SH17603 17603 YJL205C-A_10_50443_50139_INTRON_33_175 intron 26.49414 158.450988 26.49414 132.956848 79.725494 1.901597219 -0.150602 156 13 SH408 408 Asn1 3' flank 33.646757 175.899766 104.7732615 2.020250463 0.066314 156 14 SH20641 20641 YHR203C spliced 408.968401 753.553982 581.2611915 2.764371328 -0.143865 156 15 SH21392 21392 Pro2_7 spliced 156.388993 276.650298 216.5196455 2.335497307 0.469483 156 16 SH17829 17829 YKR094C_11_618384_617630_INTRON_9_376 5' exon 56.090596 274.989261 56.090596 219.898665 137.9946305 2.139862188 -0.029197 156 17 SH12619 12619 MT_15S MT_15S 41.201787 238.521251 41.201787 198.319464 119.7606255 2.078314056 -0.006593 156 18 SH8140 8140 snoRNA cluster 3; intergenic 59.137589 290.433954 59.137589 232.296365 145.716977 2.163510153 -0.103433 156 19 SH12920 12920 MT COX1 COX1ai2 33.860961 193.281208 33.860961 160.420247 97.140604 1.987400799 0.192182 156 20 SH15428 15428 YBL072C_2_89435_88518_INTRON_1_308 intron 52.05144 281.569982 52.05144 230.518542 141.284991 2.150096028 -0.186207 156 21 SH10596 10596 RUF8 RUF8 906 918 33.215733 174.414624 103.8151785 2.016260855 0.065177 156 22 SH19829 19829 Negative Control 30.683142 171.787852 101.235497 2.005332819 -0.061604 156 23 SH6686 6686 snR49 5' 29.052997 147.30971 88.1813535 1.945376761 -0.039863 156 24 SH3037 3037 Ser2 3' flank 29.245747 185.512604 107.3791755 2.030920065 -0.229388 156 25 SH21178 21178 YNR053C spliced 57.398461 210.513479 133.95597 2.126962074 0.081048 156 26 SH2063 2063 Lys4 5' flank 35.188774 195.426406 115.30759 2.061857895 -0.0781 156 27 SH20165 20165 YDL136W spliced 35.334177 210.67549 123.0048335 2.089922177 -0.23882 156 28 SH4452 4452 telomerase RNA 1296-1301 + 3' 1296 35.431762 182.226594 108.829178 2.036745349 0.068609 156 29 SH5693 5693 snR34 snR34 386 405 32.647556 164.165324 98.40644 1.993023521 0.100517 156 30 SH3948 3948 RNase MRP RNaseMRP 156 170 37.350464 197.552839 117.4516515 2.069859128 -0.059491 156 31 SH12771 12771 MT COX1 COX1ai1 31.638315 207.845733 31.638315 177.207418 104.4228665 2.018795611 -0.035854 156 32 SH13489 13489 MT COX1 intronic 27.796563 206.369496 27.796563 179.572933 103.684748 2.015714876 -0.291552 156 33 SH4948 4948 snR9 snR9 146 160 33.289683 156.805708 95.0476955 1.977941592 0.183528 156 34 SH3135 3135 Ser4 tRNA 81 96 33.154531 164.243999 98.699265 1.994313919 0.128836 156 35 SH7896 7896 snoRNA cluster1 intergenic 31.181172 164.79106 31.181172 134.609888 82.89553 1.918531113 0.179281 156 36 SH10083 10083 RUF6 RUF6 261 282 32.951337 197.709145 115.330241 2.0619432 -0.155939 156 37 SH16835 16835 YGL178W_7_167356_170575_INTRON_4_643 intron 38.471381 203.510162 38.471381 166.038781 102.255081 2.009684897 0.324189 156 38 SH19056 19056 YOR234C_15_779404_778554_INTRON_20_546 intron 34.815718 219.558813 34.815718 185.743095 110.2794065 2.04249442 0.015344 156 39 SH8723 8723 LSR1 / U2 RNA U2 256 273 60.077506 218.830343 139.4539245 2.144430741 0.033266 156 40 SH13319 13319 MT COX1 COX1-ai5a 29.516893 176.95805 29.516893 148.441157 88.979025 1.949287643 -0.012694 156 41 SH3729 3729 Val3 3' flank 31.57938 163.749184 97.664282 1.989735762 0.040909 156 42 SH9259 9259 snR6 / U6 RNA 3' 31.790368 149.615515 90.7029415 1.957621371 0.134911 156 43 SH8023 8023 snoRNA cluster 2 snR55 30.087106 166.103465 30.087106 137.016359 83.5517325 1.92195546 0.090248 156 44 SH11332 11332 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3546 3566 37.884734 188.981292 113.433013 2.054739468 0.047165 156 45 SH19232 19232 YPL090C_16_378390_377286_INTRON_7_400 intron 28.426396 168.575546 28.426396 141.14915 84.787773 1.928333228 -0.052491 156 46 SH20473 20473 YGL189C spliced 32.314998 217.780461 125.0477295 2.097075811 -0.37425 156 47 SH21615 21615 copy of SH7316 30.404468 138.891858 84.648163 1.927617538 0.101752 156 48 SH2257 2257 Phe1 3' flank 30.385108 160.235171 95.3101395 1.979139105 -0.014466 156 49 SH21278 21278 YPL129W spliced 30.355493 180.595258 105.4753755 2.02315108 -0.132472 156 50 SH11261 11261 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3191 3204 102.48435 248.573255 175.5288025 2.24434839 0.249361 156 51 SH1491 1491 Leu3 5' flank 30.335497 153.412273 91.873885 1.963192081 0.017393 156 52 SH9324 9324 RUF1 RUF1 196 215 28.450278 136.521649 82.4859635 1.916380052 -0.024745 156 53 SH7931 7931 snoRNA cluster1 snR72 34.27838 177.83302 34.27838 144.55464 89.41651 1.951417715 0.319164 156 54 SH19919 19919 YAL030W spliced 40.174081 201.536857 120.855469 2.082266308 -0.058529 156 55 SH5882 5882 snR35 3' 29.65733 155.081863 92.3695965 1.965529046 -0.038297 156 56 SH21337 21337 YPR063C spliced 30.727537 161.590224 96.1588805 1.982989399 0.001969 156 57 SH16936 16936 YGR027C_7_534779_534126_INTRON_1_312 intron 104.094325 396.733016 104.094325 293.638691 198.866508 2.298561648 -0.054406 156 58 SH21843 21843 copy of SH17173 30.877563 181.742644 106.3101035 2.026574541 -0.107029 156 59 SH19194 19194 YPL081W_16_404945_406039_INTRON_8_508 exon/intron 54.395743 279.124646 54.395743 225.728903 140.062323 2.146321325 -0.108128 156 60 SH8249 8249 snoRNA cluster4 5' 30.892786 176.239033 30.892786 146.346247 88.6195165 1.947529376 0.09337 156 61 SH3804 3804 RNaseP 5' flank 40.603844 203.134668 121.869256 2.08589416 -0.07019 156 62 SH11092 11092 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2346 2359 28.844125 162.894586 95.8693555 1.981679808 -0.135812 156 63 SH3024 3024 Ser2 81-82 + 3' flank 81 26.844686 123.125088 74.984887 1.874973741 -0.059901 156 64 SH7763 7763 snoRNA cluster1 snR76 36.484829 218.970419 36.484829 183.48559 109.9852095 2.041334286 0.084801 156 65 SH19904 19904 snR17B spliced 34.521342 161.535032 98.028187 1.991350971 0.221253 156 66 SH21515 21515 copy of SH3110 28.730472 165.908557 97.3195145 1.988199934 -0.158857 156 67 SH9207 9207 snR6 / U6 RNA 5' 344.97252 478.416634 411.694577 2.614575146 0.402967 156 68 SH13704 13704 MT tRNAGlu (and 5' processing site for COB) 5' / tRNA 30.810143 206.527502 30.810143 176.717359 103.763751 2.016045663 -0.082626 156 69 SH6267 6267 snR42 snR42 116 137 27.012252 131.223984 79.118118 1.898275948 -0.099899 156 70 SH17793 17793 YKL186C_11_93537_92746_INTRON_71_233 intron 31.015863 177.948739 31.015863 147.932876 89.4743695 1.951698647 0.092887 156 71 SH18928 18928 YOL121C_15_92849_92025_INTRON_21_410 intron 29.138661 207.010707 29.138661 178.872046 104.0053535 2.017055694 -0.19921 156 72 SH21492 21492 copy of SH2040 33.132774 184.581105 108.8569395 2.03685612 -0.033419 156 73 SH19685 19685 Negative Control 32.188662 169.220483 100.7045725 2.00304919 0.04324 156 74 SH2681 2681 Pro4 tRNA 71 83 136.719033 306.505944 221.6124885 2.34559423 0.140759 156 75 SH12162 12162 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7696 7711 7792.458428 6988.472918 7390.465673 3.868671804 0.123821 156 76 SH19883 19883 Negative Control 31.279684 164.930517 98.1051005 1.991691587 0.01578 156 77 SH21893 21893 copy of SH18803 35.284332 176.302371 105.7933515 2.024458376 0.119385 156 78 SH10311 10311 RUF7 RUF7 166 185 31.388856 180.74499 106.066923 2.02557997 -0.070735 156 79 SH4272 4272 telomerase RNA telomerase 396 413 33.45152 138.719699 86.0856095 1.934930559 0.301868 156 80 SH19522 19522 ACT1 29.554244 169.874568 99.714406 1.998757906 -0.1203 156 81 SH6808 6808 snR52 5' 33.623447 177.774025 105.698736 2.024069794 0.047599 156 82 SH6511 6511 snR46 snR46 46 63 31.703084 180.281104 105.992094 2.025273472 -0.049503 156 83 SH12011 12011 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6941 6958 35.792553 188.295549 112.044051 2.049388803 0.014891 156 84 SH625 625 Gln2 5' flank 31.850755 146.80675 89.3287525 1.950991269 0.154202 156 85 SH14113 14113 MT COB intronic 28.903558 175.019435 28.903558 147.115877 88.0097175 1.944530627 -0.049698 156 86 SH16767 16767 YGL103W_7_310965_311925_INTRON_50_560 5' exon 211.110888 637.282418 211.110888 427.17153 319.141209 2.503982886 0.0168 156 87 SH8000 8000 snoRNA cluster 2 intergenic 40.181843 231.250671 40.181843 192.068828 116.1253355 2.064926982 0.051549 156 88 SH14432 14432 MT 21S rRNA 21S rRNA3 38.212738 235.74275 38.212738 198.530012 118.371375 2.073246692 -0.054217 156 89 SH3282 3282 Thr2 tRNA 11 25 307.460979 455.155164 381.3080715 2.581275998 0.348316 156 90 SH21750 21750 copy of SH12971 30.082246 170.646948 100.364597 2.001580545 -0.091807 156 91 SH6116 6116 snR39B 5' 30.00137 163.783822 96.892596 1.986290592 -0.058587 156 92 SH16946 16946 YGR027C_7_534779_534126_INTRON_1_312 intron 30.872195 198.67094 30.872195 168.798745 99.83547 1.999284867 -0.032287 156 93 SH18240 18240 YML026C_13_223828_222987_INTRON_48_448 intron 31.683559 216.207801 31.683559 185.524242 108.6039005 2.035845423 -0.095597 156 94 SH16695 16695 YGL031C_7_438393_437938_INTRON_1_456 exon/intron 35.426854 207.997599 35.426854 173.570745 104.4987995 2.019111301 0.150564 156 95 SH2374 2374 Phe4 5' flank 37.122858 169.128891 103.1258745 2.013367644 0.250329 156 96 SH16242 16242 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 36.838461 188.574106 36.838461 152.735645 94.787053 1.976749021 0.399607 156 97 SH14375 14375 MT ORF9 and ORF10 (hypothetical) ORF10 32.698063 204.983424 32.698063 173.285361 102.991712 2.012802277 0.048475 156 98 SH15713 15713 YBR220C_2_663261_662457_INTRON_302_722 intron 38.322566 248.617996 38.322566 211.29543 124.808998 2.096245897 -0.194904 156 99 SH6055 6055 snR37 snR37 191 208 34.321215 177.372735 105.846975 2.024678451 0.076018 156 100 SH5042 5042 snR10 241-245 + 3' 241 32.327561 178.283166 105.3053635 2.022450492 -0.00431 156 101 SH13879 13879 MT COB intronic 30.390363 184.658968 30.390363 155.268605 92.829484 1.967685936 0.011399 156 102 SH6461 6461 snR45 151-172 + 3' 151 28.490842 137.284893 82.8878675 1.918490966 -0.026089 156 103 SH5428 5428 snR31 snR31 206 225 30.473803 143.39013 86.9319665 1.939179504 0.081562 156 104 SH2320 2320 Phe3 5' flank 30.550167 160.882832 95.7164995 1.980986807 -0.006491 157 2 SH916 916 Glu3 3' flank 29.919671 149.5222 89.7209355 1.952893793 0.009555 157 3 SH6101 6101 snR37 3' 31.916824 176.509289 104.2130565 2.017922134 -0.01546 157 4 SH18113 18113 YLR367W_12_855877_857316_INTRON_698_1180 intron 37.950285 215.908414 37.950285 178.958129 108.454207 2.035246403 0.167075 157 5 SH11876 11876 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6266 6281 14217.38261 8483.231766 11350.30719 4.055007616 0.593384 157 6 SH6982 6982 snR60 5' - 10 -9 10 30.769655 152.40188 91.5857675 1.961827989 0.052237 157 7 SH3771 3771 Val4 3' flank 30.676109 133.186347 81.931228 1.913449464 0.153173 157 8 SH17257 17257 YHR101C_8_315970_314876_INTRON_111_197 5' exon 29.537243 172.593348 29.537243 144.056105 86.796674 1.938503084 0.012356 157 9 SH8735 8735 LSR1 / U2 RNA U2 316 337 27.361054 144.48368 85.922367 1.934106233 -0.151135 157 10 SH1413 1413 Leu1 3' flank 46.737184 161.992802 104.364993 2.018554848 0.531338 157 11 SH9366 9366 RUF1 RUF1 406 421 30.668502 182.252171 106.4603365 2.027187835 -0.122573 157 12 SH15174 15174 MT COX3 5' 24.532228 143.546234 24.532228 120.014006 72.273117 1.858976785 -0.223238 157 13 SH796 796 Glu1 5' flank - tRNA12 12 56.29019 222.991168 139.640679 2.145011952 -0.0562 157 14 SH13555 13555 MT COX1 Exon 6 34.987375 181.492632 34.987375 147.505257 91.246316 1.960215339 0.338633 157 15 SH21550 21550 copy of SH4563 54.820406 206.292427 130.5564165 2.115798221 0.090372 157 16 SH6581 6581 snR47 snR47 11 30 28.771004 138.701137 83.7360705 1.922912577 -0.013479 157 17 SH4331 4331 telomerase RNA telomerase 691 705 176.320027 330.820376 253.5702015 2.404098216 0.269601 157 18 SH630 630 Gln2 5' flank 26.723827 124.772434 75.7481305 1.879371919 -0.080196 157 19 SH341 341 Arg5 tRNA 41 57 66.583451 208.21227 137.3978605 2.13797997 0.219837 157 20 SH15067 15067 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.46253 204.182336 30.46253 174.719806 102.591168 2.011109974 -0.092287 157 21 SH5813 5813 snR35 snR35 251 268 34.274889 146.728267 90.501578 1.956656152 0.305538 157 22 SH815 815 Glu1 3' flank 30.837618 176.746376 103.791997 2.016163868 -0.081127 157 23 SH3629 3629 Val1 3' flank 36.595523 186.348023 111.471773 2.047164909 0.05323 157 24 SH3231 3231 Thr1 tRNA 11 25 134.348894 323.741099 229.0449965 2.359920809 0.021392 157 25 SH170 170 Arg2 5' flank 29.584156 157.415158 93.499657 1.970810018 -0.055521 157 26 SH17978 17978 YLR211C_12_564531_563792_INTRON_19_77 intron 28.79081 172.251314 28.79081 144.460504 86.625657 1.937646541 -0.043735 157 27 SH13413 13413 MT COX1 intronic 31.719841 224.176183 31.719841 193.456342 112.5880915 2.051492457 -0.164873 157 28 SH7614 7614 snR189 snR189 141 162 26.124867 136.83906 81.4819635 1.911061486 -0.203321 157 29 SH2917 2917 Pro8 3' flank 26.138965 123.057797 74.598381 1.872729402 -0.114086 157 30 SH19045 19045 YOR234C_15_779404_778554_INTRON_20_546 intron 35.549193 186.133344 35.549193 151.584151 93.566672 1.971121183 0.340699 157 31 SH932 932 Gly1 5' flank 31.694209 172.247608 101.9709085 2.008476289 -0.003713 157 32 SH10441 10441 RUF8 RUF8 131 147 35.336611 177.774985 106.555798 2.027577086 0.107122 157 33 SH11137 11137 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2571 2588 12224.87561 14238.03332 13231.45447 4.121607587 -0.425966 157 34 SH19609 19609 RNA14 1.1 31.309474 163.992743 97.6511085 1.989677178 0.023353 157 35 SH4178 4178 telomerase RNA 5' 29.33741 164.466153 96.9017815 1.986331761 -0.108399 157 36 SH20064 20064 YBR230C spliced 29.261658 167.204431 98.2330445 1.992257604 -0.127141 157 37 SH20372 20372 YER179W spliced 25.549801 157.733076 91.6414385 1.962091898 -0.363757 157 38 SH12066 12066 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7216 7236 32.97767 169.464887 101.2212785 2.005271818 0.087044 157 39 SH5388 5388 snR31 snR31 6 24 33.093868 182.563541 107.8287045 2.032734387 -0.01628 157 40 SH20400 20400 YFR024C-A spliced 34.20403 173.917093 104.0605615 2.017286165 0.105121 157 41 SH6005 6005 snR37 5' 53.268249 168.041867 110.655058 2.04397127 0.52713 157 42 SH18781 18781 YNL265C_14_145280_144279_INTRON_28_132 3' exon 33.714483 213.144318 33.714483 180.429835 107.072159 2.02967656 0.025815 157 43 SH14972 14972 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 114.959436 407.383727 114.959436 293.424291 204.1918635 2.310038433 0.045777 157 44 SH6723 6723 snR49 snR49 141 158 41.763829 161.633009 101.698419 2.007314201 0.456581 157 45 SH2383 2383 Phe4 5' flank 28.461527 150.353743 89.407635 1.951374607 -0.099122 157 46 SH5169 5169 snR13 snR13 1 20 29.472709 164.159774 96.8162415 1.985948219 -0.09734 157 47 SH8750 8750 LSR1 / U2 RNA U2 391 406 30.443411 155.426119 92.934765 1.968178205 0.014197 157 48 SH5520 5520 snR32 3' 30.423368 155.689444 93.056406 1.968746275 0.011459 157 49 SH1090 1090 Gly4 5' flank 457.295681 849.470778 653.3832295 2.815167983 -0.200967 157 50 SH9740 9740 RUF4 RUF4 476 493 30.368203 147.60919 88.9886965 1.949334845 0.050867 157 51 SH2297 2297 Phe2 81-92 + 3' flank 81 28.449904 141.866414 85.158159 1.930226264 -0.0547 157 52 SH11861 11861 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6191 6206 163.559906 202.476414 183.01816 2.262494185 1.097938 157 53 SH7402 7402 snR69 5' 28.540377 139.236576 83.8884765 1.923702307 -0.033432 157 54 SH6601 6601 snR47 3' 42.157975 207.836657 124.997316 2.096900688 -0.099714 157 55 SH3137 3137 Ser4 91-101 + 3' flank 91 8533.26987 8983.675177 8758.472524 3.942428372 -0.158374 157 56 SH14272 14272 MT VAR1 includes 5’ processing site VAR1 30.777553 217.36294 30.777553 187.585387 109.18147 2.038148937 -0.148996 157 57 SH1743 1743 Leu7 tRNA 11 25 10043.15047 11870.07817 10956.61432 4.039676375 -0.390973 157 58 SH8690 8690 LSR1 / U2 RNA U2 91 112 30.938703 154.430991 92.684847 1.967008737 0.052893 157 59 SH6796 6796 snR50 3' 29.010974 129.474013 79.2424935 1.898958133 0.058038 157 60 SH8492 8492 snR19 / U1 RNA 5' 30.952074 151.101612 91.026843 1.959169481 0.071445 157 61 SH15675 15675 YBR191W_2_606228_607098_INTRON_12_399 intron 32.855564 199.159222 32.855564 167.303658 100.079611 2.000345609 0.09315 157 62 SH17628 17628 YJR094W-A_10_608000_608553_INTRON_3_277 intron 32.781246 234.467986 32.781246 202.68674 117.733993 2.070901874 -0.207685 157 63 SH21008 21008 YML124C spliced 28.819312 167.225545 98.0224285 1.991325458 -0.158855 157 64 SH10606 10606 RUF8 3' 34.584734 157.672538 96.128636 1.98285278 0.249272 157 65 SH18042 18042 YLR333C_12_796335_795573_INTRON_1_423 intron 30.681795 207.649144 30.681795 177.967349 104.324572 2.018386612 -0.097591 157 66 SH16373 16373 YER003C_5_159117_157735_INTRON_32_124 intron 28.763092 161.681658 28.763092 133.918566 81.340829 1.910308594 0.013287 157 67 SH4139 4139 SRP RNA SRP RNA 586 602 221.295497 389.516902 305.4061995 2.484877849 0.231935 157 68 SH9790 9790 RUF4 RUF4 726 745 73.938638 251.724823 162.8317305 2.211739038 -0.077588 157 69 SH21807 21807 copy of SH15282 35.856867 175.386445 105.621656 2.023752972 0.147457 157 70 SH7123 7123 snR63 snR63 121 138 29.108972 151.548781 90.3288765 1.955826609 -0.058359 157 71 SH17103 17103 YHL001W_8_104270_105084_INTRON_130_527 intron/exon 29.189119 177.958857 29.189119 149.769738 89.4794285 1.951723202 -0.043087 157 72 SH21522 21522 copy of SH3383 41.08258 173.404771 107.2436755 2.03037169 0.291839 157 73 SH21275 21275 YPL090C spliced 31.243261 163.765891 97.504576 1.989024998 0.020802 157 74 SH6335 6335 snR43 5' 35.205083 180.186923 107.696003 2.032199585 0.079915 157 75 SH17020 17020 YGR148C_7_788173_787307_INTRON_1_392 intron 41.147723 217.487153 41.147723 177.33943 109.2435765 2.03839591 0.244094 157 76 SH10198 10198 RUF6 RUF6 836 853 29.304225 160.956474 95.1303495 1.978319092 -0.093274 157 77 SH21095 21095 YNL044W spliced 33.288107 161.489847 97.388977 1.988509804 0.153534 157 78 SH21526 21526 copy of SH3561 86.140528 260.07501 173.107769 2.238316559 -0.002863 157 79 SH18318 18318 YML085C_13_99400_97941_INTRON_26_141 intron 35.395634 195.78799 35.395634 161.392356 98.393995 1.992968594 0.268906 157 80 SH13422 13422 MT COX1 intronic 35.47701 181.541972 35.47701 147.064962 91.270986 1.960332742 0.36765 157 81 SH21234 21234 YOR293W spliced 33.565027 179.937569 106.751298 2.028373164 0.025103 157 82 SH5342 5342 snR30 snR30 561 575 31.643072 185.183192 108.413132 2.035081891 -0.094024 157 83 SH3785 3785 Val4 3' flank 63.882317 211.159402 137.5208595 2.138368578 0.156976 157 84 SH3544 3544 Tyr2 5' flank - tRNA7 7 33.791431 175.490156 104.6407935 2.019701024 0.075388 157 85 SH9040 9040 snR17a / U3a 486-490 + 3' 486 29.84458 146.532104 88.188342 1.945411178 0.020704 157 86 SH15986 15986 YDL136W_4_217600_218367_INTRON_4_408 intron 35.96198 215.274616 35.96198 180.312636 108.137308 2.033975554 0.10422 157 87 SH19107 19107 YOR312C_15_901173_900242_INTRON_2_427 intron 31.990509 171.674989 31.990509 140.68448 86.3374945 1.936199441 0.197795 157 88 SH11542 11542 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4596 4613 499.764514 637.956768 568.860641 2.755005886 0.378901 157 89 SH8125 8125 snoRNA cluster 3; snR41 32.043353 188.672881 32.043353 157.629528 94.8364405 1.976975245 0.106873 157 90 SH9689 9689 RUF4 RUF4 221 237 32.004545 185.840021 108.922283 2.037116736 -0.086391 157 91 SH6933 6933 snR58 snR58 26 43 31.909345 157.039788 94.4745665 1.975314908 0.102847 157 92 SH8306 8306 snoRNA cluster4 intergenic 31.756903 221.83299 31.756903 191.076087 111.416495 2.046949492 -0.142583 157 93 SH8059 8059 snoRNA cluster 2 intergenic 37.53702 201.242558 37.53702 164.705538 101.121279 2.004842554 0.30834 157 94 SH2805 2805 Pro6 3' flank 30.329277 134.223518 82.2763975 1.915275268 0.123181 157 95 SH14086 14086 MT COB Cytbi4 31.066125 186.672182 31.066125 156.606057 93.836091 1.972369908 0.050092 157 96 SH189 189 Arg2 61-73 61 73 14243.13469 10229.86022 12236.49745 4.087657124 0.297817 157 97 SH1785 1785 Leu8 5' flank 34.47399 181.983911 108.2289505 2.034343447 0.03803 157 98 SH18098 18098 YLR367W_12_855877_857316_INTRON_698_1180 intron 41.989204 216.562255 41.989204 175.573051 108.7811275 2.036553556 0.280218 157 99 SH3554 3554 Tyr2 tRNA-intron/exon 41 59 32.23275 151.406596 91.819673 1.962935742 0.153951 157 100 SH18480 18480 YMR143W_13_551927_552902_INTRON_25_568 3' exon 53.288879 282.259763 53.288879 229.970884 141.6298815 2.151154892 -0.16332 157 101 SH9871 9871 RUF5-1 RUF5-1 161 173 35.990537 169.843569 102.917053 2.012487342 0.206105 157 102 SH5768 5768 snR35 snR35 26 40 32.193557 166.072042 99.1327995 1.996217371 0.062606 157 103 SH2193 2193 Met2 3' flank 34.19247 190.748752 112.470611 2.051039054 -0.051168 157 104 SH4860 4860 snR8 snR8 81 93 116.180321 267.202093 191.691207 2.282602192 0.233242 158 2 SH19561 19561 CBP1 2.2 29.916704 143.245328 86.581016 1.937422678 0.043639 158 3 SH2034 2034 Lys3 3' flank 27.848589 153.635898 90.7422435 1.957809513 -0.161802 158 4 SH14469 14469 MT 21S rRNA 21S rRNA3 27.807357 171.827417 27.807357 145.02006 86.4137085 1.936582644 -0.119946 158 5 SH2135 2135 Met1 tRNA 61 73 87.445033 253.469437 170.457235 2.231615439 0.061459 158 6 SH17988 17988 YLR275W_12_694378_694800_INTRON_6_95 intron 31.696939 183.312856 31.696939 152.615917 92.156428 1.964525633 0.112718 158 7 SH9365 9365 RUF1 RUF1 401 418 33.582291 166.204627 99.893459 1.999537052 0.140744 158 8 SH1437 1437 Leu2 5' flank 29.442425 169.804192 99.6233085 1.998360961 -0.126966 158 9 SH10549 10549 RUF8 RUF8 671 692 27.269448 157.626647 92.4480475 1.965897743 -0.226046 158 10 SH6059 6059 snR37 snR37 211 228 30.92438 173.922295 102.4233375 2.010398923 -0.05951 158 11 SH6276 6276 snR42 snR42 161 182 28.646496 162.415691 95.5310935 1.980144749 -0.147695 158 12 SH2017 2017 Lys3 tRNA-exon/intron 31 47 28.277631 163.547491 95.912561 1.981875487 -0.180217 158 13 SH277 277 Arg4 5' flank 26.95329 186.335335 106.6443125 2.027937699 -0.38648 158 14 SH8478 8478 snoRNA cluster 5 3' 31.23523 181.322615 31.23523 151.087385 91.1613075 1.959810546 0.09042 158 15 SH9385 9385 RUF1 RUF1 501 517 56.65345 228.323294 142.488372 2.153779424 -0.101571 158 16 SH19700 19700 Negative Control 39.713943 173.432729 106.573336 2.02764856 0.267517 158 17 SH7238 7238 snR65 5' 34.0653 160.300967 97.1831335 1.987590898 0.204185 158 18 SH17684 17684 YKL006W_11_431544_432358_INTRON_130_527 intron 30.39351 200.345963 30.39351 170.952453 100.6729815 2.002912931 -0.074381 158 19 SH8794 8794 LSR1 / U2 RNA U2 611 630 26.827625 129.593138 78.2103815 1.893264404 -0.10364 158 20 SH6923 6923 snR58 5' 26.943637 162.607531 94.775584 1.976696469 -0.275834 158 21 SH8367 8367 snoRNA cluster 5 5' 28.936115 196.237932 28.936115 168.301817 98.618966 1.993960445 -0.155658 158 22 SH1664 1664 Leu5 3' flank 27.303147 129.988633 78.64589 1.895676032 -0.070031 158 23 SH4878 4878 snR8 snR8 171 183 36.776319 182.733491 109.754905 2.040423938 0.099376 158 24 SH19777 19777 Negative Control 37.024894 178.683967 107.8544305 2.03283799 0.152949 158 25 SH19025 19025 YOR182C_15_678792_678190_INTRON_4_414 intron 37.238145 224.505055 37.238145 188.26691 112.7525275 2.052126286 0.043234 158 26 SH14004 14004 MT COB intronic 31.740643 180.578136 31.740643 149.837493 90.789068 1.958033558 0.130461 158 27 SH11854 11854 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6156 6176 114.292272 311.761756 213.027014 2.32843468 -0.073981 158 28 SH19600 19600 AEP2/ATP13 2.1 29.987709 150.488569 90.238139 1.95539013 0.00905 158 29 SH10915 10915 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1461 1474 29.985165 175.249334 102.6172495 2.01122037 -0.124888 158 30 SH6106 6106 snR37 3' 28.048925 173.856338 100.9526315 2.004117644 -0.246587 158 31 SH4136 4136 SRP RNA SRP RNA 571 583 35.511839 180.831642 108.1717405 2.034113818 0.084281 158 32 SH21027 21027 YMR116C spliced 39.136321 200.668732 119.9025265 2.078828334 -0.064371 158 33 SH9802 9802 RUF4 786-788 + 3' 786 33.342774 198.957007 116.1498905 2.065018805 -0.155219 158 34 SH3431 3431 Trp1 5' flank - tRNA4 4 33.192272 186.468321 109.8302965 2.040722156 -0.048435 158 35 SH1921 1921 Lys1 61-72 + 3' flank 61 73 34.91954 164.948689 99.9341145 1.999713769 0.219263 158 36 SH1503 1503 Leu3 5' flank - tRNA5 5 34.829962 196.306402 115.568182 2.062838281 -0.095136 158 37 SH14435 14435 MT 21S rRNA 21S rRNA3 29.25917 180.677817 29.25917 152.418647 90.8389085 1.958271907 -0.052315 158 38 SH10970 10970 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1736 1754 452.942113 996.050958 724.4965355 2.860036313 -0.472888 158 39 SH6778 6778 snR50 snR50 66 80 34.980079 172.980605 103.980342 2.016951242 0.141108 158 40 SH17892 17892 YLR048W_12_242233_243350_INTRON_91_449 intron 27.696665 188.080105 27.696665 161.38344 94.5400525 1.975615839 -0.212508 158 41 SH19667 19667 SIR1 2.4 31.630752 172.082636 101.856694 2.007989576 -0.006486 158 42 SH1531 1531 Leu3 3' flank 35.628337 148.384594 92.0064655 1.963818347 0.366531 158 43 SH13066 13066 MT COX1 intronic 30.13356 200.046375 30.13356 170.912815 100.5231875 2.002266251 -0.090202 158 44 SH727 727 Gln4 5' flank 28.370781 158.55037 93.4605755 1.970628451 -0.148254 158 45 SH8300 8300 snoRNA cluster4 intergenic 36.146363 183.649736 36.146363 148.503373 92.324868 1.965318695 0.392703 158 46 SH10785 10785 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 811 826 10575.51091 10397.99649 10486.7537 4.020641068 -0.113427 158 47 SH1951 1951 Lys2 5' flank 34.299208 173.547436 103.923322 2.016713021 0.11204 158 48 SH16801 16801 YGL137W_7_249872_252741_INTRON_19_218 intron 30.434506 206.604685 30.434506 177.170179 103.8023425 2.016207154 -0.108158 158 49 SH14718 14718 MT tRNA cys; tRNA his 5' / tRNA cys 45.80781 257.725294 45.80781 212.917484 129.362647 2.111808893 -0.10129 158 50 SH12950 12950 MT COX1 COX1ai2 40.001138 245.128574 40.001138 206.127436 123.064287 2.09013204 -0.112587 158 51 SH3496 3496 Tyr1 tRNA 21 36 70.911973 214.770293 142.841133 2.154853286 0.207169 158 52 SH20424 20424 YGL031C spliced 142.783746 352.322849 247.5532975 2.393668716 -0.070446 158 53 SH15468 15468 YBL087C_2_60732_59815_INTRON_43_546 intron 36.284575 217.898527 36.284575 182.613952 109.4492635 2.039212843 0.091278 158 54 SH16742 16742 YGL076C_7_365994_364333_INTRON_565_1032 intron 30.598361 200.606984 30.598361 171.008623 100.803492 2.003475577 -0.062157 158 55 SH228 228 Arg3 5' flank - tRNA 12 5' flank 12 42.372683 175.844446 109.1085645 2.037858842 0.283286 158 56 SH5338 5338 snR30 snR30 541 560 30.828672 158.761953 94.7953125 1.976786863 0.023093 158 57 SH12004 12004 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6906 6928 28.974983 145.721615 87.348299 1.941254452 -0.037079 158 58 SH6930 6930 snR58 snR58 11 31 34.91235 160.578346 97.745348 1.990096097 0.248343 158 59 SH10313 10313 RUF7 RUF7 176 197 29.062935 135.117074 82.0900045 1.914290279 0.028185 158 60 SH8594 8594 snR19 / U1 RNA U1 466 482 31.004484 159.177868 95.091176 1.978140218 0.032775 158 61 SH11675 11675 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5261 5276 11094.35356 4096.797829 7595.575694 3.880560696 1.43084 158 62 SH1290 1290 Ile2 3' flank 30.875925 163.64236 97.2591425 1.987930436 -0.000541 158 63 SH1576 1576 Leu4 tRNA-intron 51 65 28.854259 173.883327 101.368793 2.005904275 -0.188807 158 64 SH11582 11582 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4796 4809 91.302726 274.146748 182.724737 2.261797345 -0.049948 158 65 SH21332 21332 YPR043W spliced 56.012434 210.620527 133.3164805 2.12488384 0.061418 158 66 SH12783 12783 MT COX1 COX1ai1 34.619186 217.540122 34.619186 183.920936 109.270061 2.038501186 0.025199 158 67 SH18384 18384 YMR116C_13_500687_499455_INTRON_538_810 intron 50.30039 258.539397 50.30039 209.239007 129.7696985 2.113173296 0.00004 158 68 SH19732 19732 Negative Control 31.8727 166.700899 99.2867995 1.996891511 0.040041 158 69 SH11563 11563 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4701 4718 29798.65872 11078.6418 20438.65026 4.310452212 1.126883 158 70 SH15783 15783 YDL029W_4_399336_400634_INTRON_23_145 5' exon 35.049575 237.225821 35.049575 203.176246 119.1129105 2.075958837 -0.165603 158 71 SH2237 2237 Phe1 tRNA 61 73 194.184793 325.40006 259.7924265 2.414626486 0.404462 158 72 SH17144 17144 YHR010W_8_126513_127484_INTRON_32_592 intron/exon 29.285067 186.675275 29.285067 158.390208 93.8376375 1.972377065 -0.081611 158 73 SH9654 9654 RUF4 RUF4 46 60 32.271904 181.207014 106.739459 2.028324997 -0.033824 158 74 SH10452 10452 RUF8 RUF8 186 205 35.244005 193.630606 114.4373055 2.058567624 -0.056885 158 75 SH9684 9684 RUF4 RUF4 196 213 37.222495 197.744763 117.483629 2.069977353 -0.064034 158 76 SH15836 15836 YDL075W_4_322225_322987_INTRON_58_478 intron 33.273421 210.2053 33.273421 177.931879 105.60265 2.023674817 0.033565 158 77 SH20246 20246 YDR367W spliced 29.341778 117.320169 73.3309735 1.86528745 0.163049 158 78 SH2195 2195 Met2 3' flank 29.378634 171.495601 100.4371175 2.00189424 -0.141091 158 79 SH15274 15274 MT 9S rRNA 9S 29.428549 172.480743 29.428549 144.052194 86.7403715 1.938221278 0.004613 158 80 SH12489 12489 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 31.47228 173.16936 31.47228 142.69708 87.08468 1.93994176 0.152395 158 81 SH7654 7654 snoRNA cluster1 5' 29.54444 183.04256 29.54444 154.49812 92.02128 1.96388827 -0.043156 158 82 SH12180 12180 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7786 7804 29.601892 173.737801 101.6698465 2.007192168 -0.140136 158 83 SH9457 9457 RUF2 RUF2 126 143 31.656534 163.700213 97.6783735 1.989798419 0.045775 158 84 SH5205 5205 snR13 3' 31.717385 178.801211 105.259298 2.022260469 -0.040285 158 85 SH9976 9976 RUF5-1 RUF5-1 686 703 33.78792 184.393402 109.090661 2.037787573 -0.008246 158 86 SH3672 3672 Val2 3' flank 40.904753 170.770177 105.837465 2.024639429 0.322113 158 87 SH15014 15014 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 31.897745 209.391348 31.897745 178.493603 105.195674 2.021997881 -0.027936 158 88 SH20039 20039 YBR186W spliced 31.932683 172.504006 102.2183445 2.009528843 0.008789 158 89 SH18239 18239 YML026C_13_223828_222987_INTRON_48_448 intron 35.96904 225.628148 35.96904 190.659108 113.314074 2.054283854 -0.008797 158 90 SH16868 16868 YGL187C_7_150529_149708_INTRON_1_342 intron 33.900185 201.802815 33.900185 168.90263 101.4014075 2.006043983 0.141996 158 91 SH12450 12450 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.809578 201.157927 37.809578 164.348349 101.0789635 2.00466078 0.320671 158 92 SH20266 20266 YDR424C spliced 31.623858 171.772945 101.6984015 2.007314127 -0.005063 158 93 SH8490 8490 snR19 / U1 RNA 5' 39.360085 177.06473 108.2124075 2.034277059 0.216046 158 94 SH19328 19328 YPL218W_16_138697_139408_INTRON_29_167 intron 29.206738 176.845498 29.206738 148.63876 88.922749 1.94901288 -0.035747 158 95 SH13571 13571 MT COX1 Exon 6 28.967381 163.193709 28.967381 135.226328 82.0968545 1.914326518 0.02062 158 96 SH14046 14046 MT COB Cytbi4 36.487405 217.642712 36.487405 182.155307 109.321356 2.03870501 0.100698 158 97 SH15568 15568 YBR084C-A_2_415219_414144_INTRON_3_508 intron 34.302302 191.262448 34.302302 157.960146 96.131224 1.982864472 0.232092 158 98 SH2676 2676 Pro4 tRNA-intron 46 60 3510.569013 2445.447292 2978.008153 3.473925882 0.753995 158 99 SH14730 14730 MT tRNA cys; tRNA his intergenic / tRNA his 32.068019 203.312488 32.068019 172.244469 102.156244 2.009264917 0.018225 158 100 SH9267 9267 RUF1 5' 45.363276 194.735986 120.049631 2.079360829 0.09334 158 101 SH7282 7282 snR66 5' 31.994618 174.18547 103.090044 2.013216725 0.002556 158 102 SH13530 13530 MT COX1 intronic 30.123396 194.160907 30.123396 165.037511 97.5804535 1.989362832 -0.05634 158 103 SH15584 15584 YBR084C-A_2_415219_414144_INTRON_3_508 intron 32.106353 181.945617 32.106353 150.839264 91.4728085 1.961292013 0.148838 158 104 SH5815 5815 snR35 snR35 261 278 32.203041 148.734531 90.468786 1.956498763 0.166461 159 2 SH15611 15611 YBR181C_2_592732_591670_INTRON_7_358 5' exon 29.89099 197.07799 29.89099 168.187 99.038995 1.995806225 -0.088977 159 3 SH11658 11658 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5176 5191 2233.334873 1576.730107 1905.03249 3.279902387 0.845191 159 4 SH8345 8345 snoRNA cluster4 snR53 27.754009 165.742595 27.754009 138.988586 83.3712975 1.92101656 -0.090886 159 5 SH2058 2058 Lys4 5' flank 65.977616 243.514731 154.7461735 2.189619919 -0.109616 159 6 SH10245 10245 RUF6 3' 29.602001 160.259231 94.930616 1.977406299 -0.068775 159 7 SH15645 15645 YBR189W_2_604466_605466_INTRON_8_420 exon/intron 31.472626 204.249172 31.472626 173.776546 102.624586 2.011251418 -0.025807 159 8 SH20157 20157 YDL130W spliced 29.32657 174.78007 102.05332 2.008827138 -0.163681 159 9 SH2188 2188 Met2 71-72 + 3' flank 71 29.11812 153.639481 91.3788005 1.960845453 -0.068806 159 10 SH5401 5401 snR31 snR31 71 85 34.690525 174.911273 104.800899 2.020365008 0.112421 159 11 SH10435 10435 RUF8 RUF8 101 121 30.460798 153.234723 91.8477605 1.963068571 0.026885 159 12 SH8095 8095 snoRNA cluster 2 3' 29.134777 170.19369 29.134777 142.058913 85.596845 1.932457757 -0.005658 159 13 SH1950 1950 Lys2 5' flank 29.696407 142.203444 85.9499255 1.934245505 0.033762 159 14 SH10531 10531 RUF8 RUF8 581 602 26.553685 129.764368 78.1590265 1.892979141 -0.125843 159 15 SH11370 11370 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3736 3753 2968.026402 3893.36109 3430.693746 3.535381951 -0.199333 159 16 SH16210 16210 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 26.975709 193.815593 26.975709 167.839884 97.4077965 1.988593719 -0.299022 159 17 SH3047 3047 Ser3 5' flank 32.286885 184.649034 108.4679595 2.03530147 -0.06502 159 18 SH5592 5592 snR33 3' 34.067814 147.652116 90.859965 1.958372565 0.287833 159 19 SH4307 4307 telomerase RNA telomerase 571 587 35.96243 164.693169 100.3277995 2.001421287 0.257132 159 20 SH4232 4232 telomerase RNA telomerase 196 210 43.446528 163.639085 103.5428065 2.015119932 0.457663 159 21 SH20134 20134 YDL083C spliced 30.870449 180.844171 105.85731 2.024720854 -0.102424 159 22 SH1499 1499 Leu3 5' flank 31.099785 172.180297 101.640041 2.007064832 -0.038709 159 23 SH11827 11827 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6021 6036 8560.542564 8697.878883 8629.210724 3.935971074 -0.102791 159 24 SH5533 5533 snR33 5' 27.792094 135.118709 81.4554015 1.910919889 -0.065604 159 25 SH20677 20677 YIL106W spliced 27.944004 145.629902 86.786953 1.938454441 -0.112892 159 26 SH17634 17634 YJR094W-A_10_608000_608553_INTRON_3_277 intron 28.056429 183.062932 28.056429 156.006503 92.031466 1.96393634 -0.158274 159 27 SH10401 10401 RUF8 5' 33.814515 173.149258 103.4818865 2.014864337 0.098867 159 28 SH10180 10180 RUF6 RUF6 746 760 37.648196 177.401866 107.525031 2.031509576 0.180444 159 29 SH7363 7363 snR68 snR68 36 48 13569.97652 9911.689791 11740.83315 4.069698916 0.285431 159 30 SH14223 14223 MT ATP9 ATP9 33.766409 183.247001 33.766409 150.480592 92.1235005 1.964370432 0.251941 159 31 SH7090 7090 snR63 5' 33.663275 146.772647 90.217961 1.955293007 0.26925 159 32 SH13452 13452 MT COX1 intronic 27.890095 167.403055 27.890095 140.51296 84.2015275 1.92531997 -0.089085 159 33 SH13585 13585 MT COX1 exon 6 / 3' 27.765733 162.957007 27.765733 136.191274 81.9785035 1.913699986 -0.074108 159 34 SH10191 10191 RUF6 RUF6 801 817 40.699287 177.780139 109.239713 2.03838055 0.230936 159 35 SH9917 9917 RUF5-1 RUF5-1 391 408 29.394535 140.256154 84.8253445 1.928525632 0.022989 159 36 SH1109 1109 Gly4 tRNA 21 35 36.735585 174.347969 105.541777 2.023424402 0.186481 159 37 SH17893 17893 YLR048W_12_242233_243350_INTRON_91_449 intron 36.712876 205.571592 36.712876 169.858716 103.285796 2.014040601 0.229759 159 38 SH6402 6402 snR43 3' 34.910435 160.585186 97.7478105 1.990107038 0.248197 159 39 SH14389 14389 MT 21S rRNA 5' 31.309552 169.807953 31.309552 139.498401 85.4039765 1.931478092 0.160002 159 40 SH11700 11700 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5386 5399 8279.829789 6131.284273 7205.557031 3.85766756 0.410567 159 41 SH8587 8587 snR19 / U1 RNA U1 431 447 29.779959 145.917172 87.8485655 1.943734674 0.019589 159 42 SH569 569 Cys1 3' flank 31.858826 157.429323 94.6440745 1.976093429 0.097368 159 43 SH435 435 Asp1 5' flank - tRNA16 5' flank 16 28.234645 147.192086 87.7133655 1.943065775 -0.099416 159 44 SH7375 7375 snR68 snR68 96 113 32.187234 146.056281 89.1217575 1.949983742 0.180162 159 45 SH11475 11475 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4261 4277 3441.989757 2278.810297 2860.400027 3.456426773 0.839143 159 46 SH17408 17408 YIL106W_9_166412_167441_INTRON_21_105 5' exon 38.117444 255.316748 38.117444 218.199304 128.158374 2.107746989 -0.271599 159 47 SH8584 8584 snR19 / U1 RNA U1 416 432 30.43935 168.794547 99.6169485 1.998333234 -0.058657 159 48 SH8651 8651 snR19 / U1 RNA 3' 30.432069 143.076319 86.754194 1.938290479 0.080493 159 49 SH14892 14892 MT tRNA Ile 5' 30.417259 197.55044 30.417259 168.133181 99.27522 1.996840858 -0.056025 159 50 SH7842 7842 snoRNA cluster1 snR74 36.178547 222.178302 36.178547 186.999755 111.589151 2.047621973 0.037519 159 51 SH10767 10767 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 721 736 34.272705 174.018878 104.1457915 2.017641725 0.106537 159 52 SH3954 3954 RNase MRP RNaseMRP 186 200 30.472799 136.993444 83.7331215 1.922897282 0.117205 159 53 SH20762 20762 YJR145C spliced 827.56585 1251.393534 1039.479692 3.016816009 -0.079946 159 54 SH16532 16532 YER131W_5_423587_424307_INTRON_1_361 intron 53.961535 254.550113 53.961535 201.588578 127.7750565 2.106446082 0.130211 159 55 SH17059 17059 YGR214W_7_920570_921783_INTRON_91_545 intron 34.661467 211.516489 34.661467 177.855022 106.2582445 2.026362637 0.083254 159 56 SH17648 17648 YJR145C_10_702761_701720_INTRON_15_270 intron 28.938419 186.401865 28.938419 158.463446 93.7009325 1.971743913 -0.106697 159 57 SH7371 7371 snR68 snR68 76 100 27.075406 129.428813 78.2521095 1.893496054 -0.08368 159 58 SH358 358 Arg5 3' flank 303.962014 484.136154 394.049084 2.595550322 0.23058 159 59 SH4117 4117 SRP RNA SRP RNA 476 492 36.966635 176.553558 106.7600965 2.028408958 0.172779 159 60 SH11234 11234 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3056 3073 46609.34438 30331.35349 38470.34893 4.585126125 0.107376 159 61 SH12660 12660 MT_15S MT_15S 32.952147 219.440688 32.952147 187.488541 110.220344 2.042261762 -0.06634 159 62 SH18086 18086 YLR344W_12_819312_820142_INTRON_20_466 intron/exon 29.938646 194.263164 29.938646 165.324518 97.631582 1.989590327 -0.070515 159 63 SH8131 8131 snoRNA cluster 3; snR41 32.781109 213.969788 32.781109 182.188679 107.484894 2.031347432 -0.024187 159 64 SH8534 8534 snR19 / U1 RNA U1 166 182 37.579956 190.923732 114.251844 2.057863218 0.019179 159 65 SH9536 9536 RUF3 RUF3 66 86 28.806218 144.557302 86.68176 1.937927721 -0.04313 159 66 SH1434 1434 Leu2 5' flank 30.767825 176.273592 103.5207085 2.015027236 -0.082641 159 67 SH5122 5122 snR11 snR11 211 228 33.754963 189.848054 111.8015085 2.048447663 -0.058609 159 68 SH11577 11577 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4771 4787 36.796892 171.323672 104.060282 2.017284998 0.218007 159 69 SH18879 18879 YNR053C_14_723108_721117_INTRON_811_1341 intron 31.045843 197.135875 31.045843 167.090032 99.0679375 1.995933121 -0.011464 159 70 SH19964 19964 YBL059W spliced 29.187729 182.311695 105.749712 2.024279193 -0.215417 159 71 SH1551 1551 Leu4 5' flank 30.254414 149.868712 90.061563 1.95453948 0.030769 159 72 SH3594 3594 Val1 5' flank 29.320611 148.854742 89.0876765 1.949817632 -0.028795 159 73 SH784 784 Glu1 5' flank 27.36925 153.04496 90.207105 1.955240745 -0.195365 159 74 SH13285 13285 MT COX1 Exon 5a 31.327928 175.723105 31.327928 145.395177 88.3615525 1.946263338 0.12768 159 75 SH13117 13117 MT COX1 COX1ai3 33.305429 207.108259 33.305429 174.80283 104.0541295 2.01725932 0.064656 159 76 SH20290 20290 YDR500C spliced 45.206499 197.923711 121.565105 2.08480893 0.054608 159 77 SH4267 4267 telomerase RNA telomerase 371 388 29.36953 142.494106 85.931818 1.934154 0.00886 159 78 SH21226 21226 YOR234C spliced 40.308656 189.156707 114.7326815 2.059687144 0.088354 159 79 SH12054 12054 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7156 7173 39.369563 177.836665 108.603114 2.035842278 0.206742 159 80 SH866 866 Glu2 3' flank 29.484568 132.673911 81.0792395 1.908909666 0.07274 159 81 SH3237 3237 Thr1 tRNA 41 56 148.822008 267.81782 208.319914 2.318730788 0.478275 159 82 SH19563 19563 CBP1 2.2 145.083648 295.030749 220.0571985 2.34253558 0.272804 159 83 SH7571 7571 snR189 5' 29.611302 139.987125 84.7992135 1.928391824 0.039959 159 84 SH17037 17037 YGR183C_7_859471_859058_INTRON_4_216 intron 33.650674 203.037611 33.650674 170.386937 102.0188055 2.008680234 0.119297 159 85 SH12068 12068 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7226 7245 29.697718 165.759225 97.7284715 1.990021106 -0.089411 159 86 SH16326 16326 YDR471W_4_1401759_1402553_INTRON_32_415 intron 29.743897 189.224167 29.743897 160.48027 95.1120835 1.978235695 -0.059967 159 87 SH928 928 Glu3 3' flank 33.800403 179.130067 106.465235 2.027207817 0.041064 159 88 SH20601 20601 YHR041C spliced 29.808539 150.412321 90.11043 1.954775062 -0.002976 159 89 SH11466 11466 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4216 4234 5518.051802 3427.484174 4472.767988 3.650576371 0.809438 159 90 SH21214 21214 YOR122C spliced 29.752292 149.28971 89.521001 1.95192493 -0.000827 159 91 SH10832 10832 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1046 1066 1387.481858 1341.474733 1364.478296 3.134966632 0.476277 159 92 SH9900 9900 RUF5-1 RUF5-1 306 322 31.48837 145.349606 88.418988 1.94654554 0.138535 159 93 SH2146 2146 Met1 3' flank 31.279158 175.396476 103.337817 2.014259283 -0.046761 159 94 SH16604 16604 YFL034C-B_6_63992_63015_INTRON_21_134 5' exon 32.997322 204.140287 32.997322 172.142965 102.5701435 2.011020963 0.072227 159 95 SH11684 11684 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5306 5323 220.468409 387.539783 304.004096 2.482879435 0.236619 159 96 SH19133 19133 YPL075W_16_412249_415357_INTRON_9_759 intron 30.533584 175.390411 30.533584 145.856827 88.1952055 1.945444976 0.071812 159 97 SH5091 5091 snR11 snR11 56 73 32.229883 140.152269 86.191076 1.935462302 0.216337 159 98 SH17723 17723 YKL156W_11_158616_159214_INTRON_4_353 exon/intron 35.858292 204.44554 35.858292 169.587248 102.72277 2.011666722 0.204244 159 99 SH1677 1677 Leu6 5' flank 28.124264 128.983229 78.5537465 1.895166903 -0.002656 159 100 SH16594 16594 YFL034C-A_6_64931_64242_INTRON_13_333 intron 37.545728 220.385861 37.545728 183.840133 110.6929305 2.044119885 0.100875 159 101 SH91 91 Ala2 3' flank 31.8432 157.271338 94.557269 1.97569492 0.097471 159 102 SH3958 3958 RNase MRP RNaseMRP 206 218 41.404809 182.884006 112.1444075 2.049777621 0.181451 159 103 SH18500 18500 YMR194W_13_651144_651909_INTRON_17_479 intron 30.044066 192.903673 30.044066 163.859607 96.9518365 1.98655604 -0.05601 159 104 SH10595 10595 RUF8 RUF8 901 913 32.047045 152.515741 92.281393 1.965114142 0.136047 160 2 SH3234 3234 Thr1 tRNA 26 42 29.832756 181.503323 105.6680395 2.02394365 -0.17004 160 3 SH7733 7733 snoRNA cluster1 intergenic 31.776629 231.565408 31.776629 200.788779 116.282704 2.065515122 -0.225507 160 4 SH1224 1224 Ile1 3' flank 31.689005 170.028655 100.85883 2.003713926 0.009154 160 5 SH20656 20656 YIL018W spliced 79.895556 240.620644 160.2581 2.204819989 0.081269 160 6 SH13628 13628 MT ATP6 ATP6 29.487724 179.088769 29.487724 150.601045 90.0443845 1.954456634 -0.026448 160 7 SH743 743 Gln4 5' flank - tRNA7 7 29.355709 161.131606 95.2436575 1.978836065 -0.090512 160 8 SH21686 21686 copy of SH10241 29.18697 156.583657 92.8853135 1.967947051 -0.079282 160 9 SH4591 4591 U3b (snR17b) 3' 32.879298 176.988813 104.9340555 2.020916458 0.028259 160 10 SH4758 4758 snR5 5' 30.644679 157.384798 94.0147385 1.973195942 0.017728 160 11 SH17212 17212 YHR039C-A_8_187670_187164_INTRON_4_165 intron 36.065659 226.142025 36.065659 191.076366 113.5710125 2.055267498 -0.01166 160 12 SH8751 8751 LSR1 / U2 RNA U2 396 410 31.850736 171.927583 101.8891595 2.00812798 0.007386 160 13 SH14821 14821 "MT tRNAs (Lys, Arg1, Gly)" intergenic / tRNA Gly 37.077947 242.908775 37.077947 206.830828 121.9543875 2.086197429 -0.165915 160 14 SH21056 21056 YMR194W spliced 140.070994 357.81137 248.941182 2.396096747 -0.118967 160 15 SH18169 18169 YLR448W_12_1028848_1029762_INTRON_16_399 intron 36.299827 237.993849 36.299827 202.694022 119.4969245 2.077356728 -0.135631 160 16 SH4567 4567 U3b (snR17b) U3b 391 405 36.04807 198.403802 117.225936 2.069023709 -0.093962 160 17 SH3522 3522 Tyr1 3' flank 28.667676 176.981044 102.82436 2.012096015 -0.218875 160 18 SH18770 18770 YNL246W_14_185459_186348_INTRON_33_127 intron 28.661051 187.334449 28.661051 159.673398 94.1672245 1.97389977 -0.132847 160 19 SH11771 11771 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5741 5754 69.784422 242.310703 156.0475625 2.193256989 -0.051671 160 20 SH12417 12417 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.722478 197.637608 30.722478 167.91513 99.318804 1.997031481 -0.036042 160 21 SH6369 6369 snR43 snR43 86 103 30.935957 141.587379 86.261668 1.935817852 0.123049 160 22 SH8386 8386 snoRNA cluster 5 5'/snR190 38.588728 215.833403 38.588728 178.244675 108.4167015 2.03509619 0.187579 160 23 SH14455 14455 MT 21S rRNA 21S rRNA3 35.136764 239.213425 35.136764 205.076661 120.1067125 2.07956728 -0.184122 160 24 SH10980 10980 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1786 1804 28021.1147 26789.89855 27405.50663 4.437837835 -0.355965 160 25 SH14810 14810 "MT tRNAs (Lys, Arg1, Gly)" intergenic / tRNA Arg1 31.77333 223.032812 31.77333 192.259482 112.016406 2.049281634 -0.152383 160 26 SH19744 19744 Negative Control 33.787239 182.630189 108.208714 2.034262236 0.007943 160 27 SH17376 17376 YIL052C_9_257061_256224_INTRON_38_509 intron 30.062256 188.100719 30.062256 159.038463 94.5503595 1.975663184 -0.030562 160 28 SH3691 3691 Val3 5' flank 28.184821 135.612753 81.898787 1.913277469 -0.039283 160 29 SH18883 18883 YOL047C_15_242745_241612_INTRON_244_306 5' exon 39.569412 224.560548 39.569412 185.991136 112.780274 2.052233145 0.112682 160 30 SH9831 9831 RUF5-1 5' 185.885364 369.81561 277.850487 2.443811162 0.127802 160 31 SH9872 9872 RUF5-1 RUF5-1 166 181 37.487001 198.261566 117.8742835 2.071419066 -0.064709 160 32 SH17964 17964 YLR185W_12_522665_523290_INTRON_8_366 intron 31.693699 182.323963 31.693699 151.630264 91.6619815 1.962189241 0.117755 160 33 SH16747 16747 YGL076C_7_365994_364333_INTRON_565_1032 intron 39.072452 200.347538 39.072452 162.275086 100.673769 2.002916328 0.381452 160 34 SH18962 18962 YOL127W_15_80347_81189_INTRON_14_427 intron 29.567266 193.045587 29.567266 164.478321 97.0227935 1.986873775 -0.092263 160 35 SH20631 20631 YHR123W spliced 57.470875 236.471192 146.9710335 2.167231748 -0.163615 160 36 SH6643 6643 snR48 snR48 41 57 48.943636 196.961805 122.9527205 2.089738143 0.116045 160 37 SH9729 9729 RUF4 RUF4 421 435 29.387262 156.0742 92.730731 1.967223683 -0.062449 160 38 SH17310 17310 YHR203C_8_505526_504472_INTRON_15_283 intron 29.429177 176.493316 29.429177 148.064139 88.746658 1.948152007 -0.016811 160 39 SH17613 17613 YJR021C_10_469271_468247_INTRON_317_396 exon/intron 33.255043 218.937498 33.255043 186.682455 109.968749 2.041269285 -0.048108 160 40 SH8975 8975 snR17a / U3a U3a 161 178 37.1628 180.386524 108.774662 2.036527742 0.134926 160 41 SH16091 16091 YDR025W_4_491510_492319_INTRON_46_384 intron 31.709445 188.377469 31.709445 157.668024 94.6887345 1.976298312 0.087042 160 42 SH7548 7548 snR79 81-84 + 3' 81 29.992089 151.664767 90.828428 1.958221798 0.003046 160 43 SH21905 21905 copy of SH19400 30.142949 165.455754 97.7993515 1.990335975 -0.057044 160 44 SH9125 9125 snR14 / U4 RNA 3' 32.176164 192.920471 112.5483175 2.051339007 -0.143082 160 45 SH4173 4173 telomerase RNA 5' 28.434285 157.187756 92.8110205 1.967599548 -0.136622 160 46 SH21741 21741 copy of SH12551 30.400664 173.920559 102.1606115 2.009283484 -0.091429 160 47 SH16479 16479 YER102W_5_362729_363698_INTRON_1_360 intron 112.296379 389.650394 112.296379 278.354015 195.325197 2.290758271 0.122116 160 48 SH7428 7428 snR69 snR69 41 53 40.051032 184.008825 112.0299285 2.049334059 0.144578 160 49 SH566 566 Cys1 3' flank 30.430555 150.765403 90.597979 1.95711851 0.037984 160 50 SH115 115 Arg1 5' flank 30.442452 154.896197 92.6693245 1.966935997 0.016899 160 51 SH7392 7392 snR68 3' 59.45606 206.966397 133.2112285 2.124540833 0.143911 160 52 SH21179 21179 YNR053C spliced 34.393638 162.638302 98.51597 1.993506638 0.20741 160 53 SH19626 19626 RNA14 2.2 40.305075 200.409463 120.357269 2.080472325 -0.043756 160 54 SH1603 1603 Leu4 3' flank 28.78951 132.422071 80.6057905 1.906366241 0.023978 160 55 SH7203 7203 snR64 snR64 81 93 34.746853 182.590244 108.6685485 2.036103866 0.041862 160 56 SH20384 20384 YFL034C-B spliced 32.917413 154.93219 93.9248015 1.972780286 0.174718 160 57 SH9033 9033 snR17a / U3a U3a 451 465 90.270806 257.107108 173.688957 2.239772207 0.063313 160 58 SH560 560 Cys1 3' flank 31.111595 158.176102 94.6438485 1.976092392 0.045047 160 59 SH512 512 Asp2 3' flank 33.092682 176.664407 104.8785445 2.020686652 0.039104 160 60 SH5967 5967 snR36 snR36 291 308 32.079755 152.294739 92.187247 1.964670846 0.139339 160 61 SH11816 11816 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5966 5979 162.083466 357.008415 259.5459405 2.414214241 0.041167 160 62 SH6740 6740 snR49 3' 28.995734 161.177008 95.086371 1.978118273 -0.116346 160 63 SH14548 14548 MT 21S rRNA 21S rRNA3 30.865553 199.622916 30.865553 169.757363 100.311458 2.001350543 -0.038443 160 64 SH14959 14959 MT tRNA Met 3' 32.748055 208.372077 32.748055 176.624022 104.6860385 2.019888766 0.026949 160 65 SH13049 13049 MT COX1 COX1ai2 28.833907 183.305379 28.833907 155.471472 92.1526895 1.964508015 -0.098764 160 66 SH993 993 Gly2 5' flank 28.852703 168.583252 98.7179775 1.994396249 -0.163003 160 67 SH2141 2141 Met1 3' flank 28.913135 127.614347 78.263741 1.893560603 0.06308 160 68 SH13480 13480 MT COX1 intronic 29.004678 176.921849 29.004678 148.917171 88.9609245 1.949199288 -0.051827 160 69 SH16459 16459 YER074W-A_0_5_307649_INTRON_95_196 3' exon 29.110367 185.229707 29.110367 157.11934 93.1148535 1.969018964 -0.087502 160 70 SH7702 7702 snoRNA cluster1 intergenic 29.211522 193.054699 29.211522 164.843177 97.0273495 1.986894168 -0.119178 160 71 SH4145 4145 SRP RNA SRP RNA 616 628 168.176117 360.320627 264.248372 2.42201232 0.06437 160 72 SH9470 9470 RUF2 RUF2 191 205 31.324501 164.523288 97.9238945 1.990888677 0.020968 160 73 SH12482 12482 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S/3' flank 27.397694 144.744056 27.397694 118.346362 72.872028 1.862560856 0.014943 160 74 SH2823 2823 Pro7 5' flank 29.38574 170.077889 99.7318145 1.998833721 -0.132205 160 75 SH21896 21896 copy of SH19001 31.369536 175.827336 103.598436 2.015353199 -0.04386 160 76 SH16033 16033 YDL191W_4_117665_118518_INTRON_4_494 intron 33.359271 228.849357 33.359271 196.490086 114.9246785 2.060413297 -0.130762 160 77 SH14945 14945 MT tRNA Met 5' 29.413608 211.564344 29.413608 183.150736 106.282172 2.026460421 -0.205671 160 78 SH17513 17513 YJL136C_10_156971_156248_INTRON_25_484 intron 29.440073 209.885901 29.440073 181.445828 105.4429505 2.02301755 -0.194487 160 79 SH5707 5707 snR34 snR34 456 477 29.472099 180.364092 104.9180955 2.020850399 -0.18638 160 80 SH7481 7481 snR71 snR71 21 36 61.435671 215.30285 138.3692605 2.14103962 0.084909 160 81 SH3345 3345 Thr3 71-72 + 3' flank 71 27.542441 141.771602 84.6570215 1.927662985 -0.122452 160 82 SH5452 5452 snR32 5' 29.552412 168.191245 98.8718285 1.995072566 -0.111389 160 83 SH16485 16485 YER102W_5_362729_363698_INTRON_1_360 intron 32.560492 182.101579 32.560492 150.541087 91.5507895 1.961662094 0.17959 160 84 SH3209 3209 Thr1 5' flank 49.583385 216.084969 132.834177 2.123309829 -0.08059 160 85 SH4354 4354 telomerase RNA telomerase 806 824 31.612042 167.877104 99.744573 1.998889275 0.017547 160 86 SH7632 7632 snR189 3' 30.6444 137.915027 84.2797135 1.925723051 0.123806 160 87 SH6191 6191 snR40 snR40 16 30 40.68699 211.724347 126.2056685 2.101078862 -0.163608 160 88 SH19317 19317 YPL198W_16_173151_174701_INTRON_12_420 intron 29.687803 179.549698 29.687803 150.861895 90.274849 1.955566771 -0.013817 160 89 SH9126 9126 snR7 U5 RNA 5' 35.678789 198.641355 117.160072 2.06877963 -0.103853 160 90 SH4333 4333 telomerase RNA telomerase 701 720 33.617549 202.171389 117.894469 2.071493431 -0.184318 160 91 SH11510 11510 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4436 4454 20542.18003 12926.81833 16734.49918 4.22361272 0.399719 160 92 SH21698 21698 copy of SH10663 39.284562 206.875876 123.080219 2.09018826 -0.131718 160 93 SH17906 17906 YLR061W_12_263195_263949_INTRON_13_401 intron 33.118232 219.308659 33.118232 187.190427 110.1543295 2.042001571 -0.057632 160 94 SH7440 7440 snR69 101 + 3' 101 32.866305 185.352369 109.109337 2.037861917 -0.050128 160 95 SH13202 13202 MT COX1 Exon4 34.537908 214.004098 34.537908 180.46619 107.502049 2.031416742 0.054381 160 96 SH1217 1217 Ile1 tRNA 46 58 84.541762 224.697983 154.6198725 2.189265311 0.268236 160 97 SH1726 1726 Leu7 5' flank 32.11167 178.046901 105.0792855 2.021517111 -0.012895 160 98 SH8004 8004 snoRNA cluster 2 intergenic 35.727829 191.168925 35.727829 156.441096 96.0844625 1.982653165 0.318026 160 99 SH4294 4294 telomerase RNA telomerase 506 522 31.801765 148.859813 90.330789 1.955835804 0.139757 160 100 SH2011 2011 Lys3 tRNA 1 17 104.602607 187.276654 145.9396305 2.164173242 0.821119 160 101 SH13333 13333 MT COX1 COX1-ai5a 202.59677 582.420206 202.59677 380.823436 291.710103 2.464951471 0.171923 160 102 SH15194 15194 MT COX3 cox3 29.861199 214.902831 29.861199 186.041632 107.9514155 2.033228341 -0.19335 160 103 SH16546 16546 YER133W_5_432491_433954_INTRON_178_702 intron 33.723432 228.923613 33.723432 196.200181 114.9618065 2.06055358 -0.116799 160 104 SH17715 17715 YKL081W_11_282533_284097_INTRON_206_531 intron 29.998913 197.547903 29.998913 168.54899 99.2739515 1.996835309 -0.084424 161 2 SH13946 13946 MT COB Cytbi3 27.724556 176.940764 27.724556 150.216208 88.970382 1.949245455 -0.153661 161 3 SH11272 11272 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3246 3264 27.65536 147.379545 87.5174525 1.942094668 -0.144067 161 4 SH8311 8311 snoRNA cluster4 intergenic 31.573441 183.936032 31.573441 153.362591 92.468016 1.965991539 0.100663 161 5 SH9064 9064 snR14 / U4 RNA 5' 32.45827 159.300061 95.8791655 1.981724245 0.120213 161 6 SH6938 6938 snR58 snR58 51 67 37.282529 174.221695 105.752112 2.02428905 0.205408 161 7 SH12192 12192 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7846 7859 48.95469 222.366045 135.6603675 2.132452989 -0.152339 161 8 SH18932 18932 YOL121C_15_92849_92025_INTRON_21_410 intron 29.026986 167.763872 29.026986 139.736886 84.381936 1.926249485 -0.000621 161 9 SH16185 16185 YDR367W_4_1212837_1213603_INTRON_31_131 intron 26.866747 178.897571 26.866747 153.030824 89.9487855 1.953995304 -0.23432 161 10 SH17365 17365 YIL052C_9_257061_256224_INTRON_38_509 intron 95.305153 369.148315 95.305153 274.843162 185.0741575 2.267345781 -0.014018 161 11 SH19530 19530 CBP1 1.2 26.34392 160.369378 93.356649 1.970145254 -0.312212 161 12 SH12015 12015 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6961 6986 27.92548 140.89359 84.409535 1.926391508 -0.088522 161 13 SH8928 8928 snR17a / U3a 5' 31.326848 152.413369 91.8701085 1.963174229 0.08942 161 14 SH21182 21182 YOL047C spliced 38.3709 179.353527 108.8622135 2.036877161 0.170067 161 15 SH2590 2590 Pro3 5' flank 32.548926 177.521393 105.0351595 2.021334699 0.011091 161 16 SH12668 12668 MT_15S 3' 32.349738 192.023835 32.349738 160.674097 96.5119175 1.984580944 0.105225 161 17 SH16121 16121 YDR064W_4_579453_580447_INTRON_22_560 intron 30.444475 209.278435 30.444475 179.83396 105.1392175 2.02176474 -0.122708 161 18 SH18516 18516 YMR201C_13_667043_665844_INTRON_28_111 intron/exon 39.515247 225.14215 39.515247 186.626903 113.071075 2.053351521 0.104281 161 19 SH21422 21422 Trp1 spliced 32.371162 165.771573 99.0713675 1.995948158 0.07473 161 20 SH17202 17202 YHR021C_8_148660_147862_INTRON_4_553 3' exon 39.869733 214.667695 39.869733 175.797962 107.8338475 2.032755101 0.240786 161 21 SH7273 7273 snR65 3' 27.271704 167.506001 97.3888525 1.988509249 -0.274761 161 22 SH7643 7643 snoRNA cluster1 5' 25.631805 172.473419 25.631805 147.841614 86.7367095 1.938202942 -0.306539 161 23 SH738 738 Gln4 5' flank 27.685884 150.363486 89.024685 1.949510446 -0.157364 161 24 SH17874 17874 YLR048W_12_242233_243350_INTRON_91_449 5' exon 29.742396 179.844266 29.742396 151.10187 90.422133 1.956274748 -0.011291 161 25 SH15818 15818 YDL064W_4_337486_338069_INTRON_39_148 5' exon 35.562586 207.600155 35.562586 173.037569 104.3000775 2.018284631 0.160337 161 26 SH5755 5755 snR35 5' 41.388912 185.128452 113.258682 2.054071503 0.153418 161 27 SH16919 16919 YGL251C_7_31636_27921_INTRON_59_210 intron 31.966239 212.832159 31.966239 181.86592 106.9160795 2.029043025 -0.051349 161 28 SH17566 17566 YJL189W_10_75932_76473_INTRON_7_392 intron 37.699417 201.605575 37.699417 164.906158 101.3027875 2.005621396 0.311458 161 29 SH11567 11567 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4721 4734 83.574478 257.896602 170.73554 2.232323932 -0.014403 161 30 SH21582 21582 copy of SH5871 28.137621 157.828319 92.98297 1.968403414 -0.161682 161 31 SH7493 7493 snR71 81-90 + 3' 81 26.180635 166.001938 96.0912865 1.982684008 -0.352208 161 32 SH15059 15059 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.868852 186.630804 29.868852 157.761952 93.815402 1.972274144 -0.037428 161 33 SH20154 20154 YDL125C spliced 31.64468 168.412041 100.0283605 2.000123151 0.016244 161 34 SH12083 12083 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7301 7319 39.039121 185.347098 112.1931095 2.049966185 0.110691 161 35 SH1898 1898 Lys1 5' flank 29.577243 180.459731 105.018487 2.021265757 -0.180261 161 36 SH4842 4842 snR8 5' - 7 7 45.402417 203.926691 124.664554 2.095742988 -0.009868 161 37 SH15493 15493 YBL092W_2_45639_46364_INTRON_1_333 intron 65.072569 286.154679 65.072569 222.08211 143.5773395 2.157085902 0.067628 161 38 SH3626 3626 Val1 3' flank 46.385687 182.065696 114.2256915 2.057763796 0.259945 161 39 SH7981 7981 snoRNA cluster 2 snR57 58.752239 265.354744 58.752239 207.602505 133.177372 2.124430441 0.128348 161 40 SH4782 4782 snR5 snR5 81 98 31.638739 145.4875 88.5631195 1.947252905 0.147654 161 41 SH10436 10436 RUF8 RUF8 106 125 29.898084 173.744833 101.8214585 2.007839314 -0.121565 161 42 SH13332 13332 MT COX1 COX1-ai5a 31.93453 188.757924 31.93453 157.823394 94.878962 1.977169925 0.099264 161 43 SH3448 3448 Trp1 tRNA 71 85 158.520187 379.506478 269.0133325 2.429773804 -0.09328 161 44 SH10130 10130 RUF6 RUF6 496 510 32.173969 141.19446 86.6842145 1.937940018 0.206732 161 45 SH473 473 Asp2 5' flank 66.896384 230.117963 148.5071735 2.171747432 0.017166 161 46 SH15501 15501 YBL092W_2_45639_46364_INTRON_1_333 3' exon 34.221972 236.962634 34.221972 203.740662 118.981317 2.075478772 -0.188551 161 47 SH19797 19797 Negative Control 32.332694 163.668469 98.0005815 1.991228653 0.08548 161 48 SH4731 4731 snR4 3' 28.510918 128.998206 78.754562 1.89627572 0.02533 161 49 SH13550 13550 MT COX1 intronic 32.377936 216.537662 32.377936 185.159726 108.768831 2.036504461 -0.066308 161 50 SH6697 6697 snR49 snR49 11 27 32.413412 161.440544 96.926978 1.986444672 0.104066 161 51 SH59 59 Ala2 5' flank 28.611669 157.752366 93.1820175 1.969332109 -0.12662 161 52 SH19494 19494 YPT1 73.368251 232.12237 152.7453105 2.183967886 0.078354 161 53 SH15141 15141 MT tRNA Thr1 reverse complement 5' 26.834831 148.858063 26.834831 123.023232 74.9290315 1.874650119 -0.059971 161 54 SH10624 10624 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 6 28 28.877185 157.074647 92.975916 1.968370466 -0.103962 161 55 SH15574 15574 YBR084C-A_2_415219_414144_INTRON_3_508 intron 32.893838 206.464456 32.893838 174.570618 103.732228 2.015913706 0.052003 161 56 SH10932 10932 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1546 1563 29.08595 122.35124 75.718595 1.879202547 0.11024 161 57 SH7322 7322 snR66 3' 31.128191 135.648767 83.388479 1.921106052 0.169708 161 58 SH16170 16170 YDR139C_4_733917_733611_INTRON_150_222 intron/exon 29.206318 202.610206 29.206318 174.403888 101.805103 2.007769548 -0.169173 161 59 SH13000 13000 MT COX1 COX1ai2 29.209569 181.325863 29.209569 153.116294 91.1629315 1.959818282 -0.059535 161 60 SH7840 7840 snoRNA cluster1 snR74 29.173621 182.155653 29.173621 153.982032 91.5778265 1.961790332 -0.066658 161 61 SH14523 14523 MT 21S rRNA 21S rRNA3 696.653226 1661.996954 696.653226 966.343728 831.498477 2.919861458 0.118248 161 62 SH9312 9312 RUF1 RUF1 136 153 30.979157 168.28265 99.6309035 1.998394069 -0.02271 161 63 SH20783 20783 YKL006W spliced 417.39584 673.886934 545.641387 2.736907304 0.065518 161 64 SH12140 12140 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7586 7604 28.882281 159.286339 94.08431 1.973517204 -0.114923 161 65 SH17479 17479 YJL001W_10_434855_435618_INTRON_66_181 intron/exon 32.746723 214.357966 32.746723 182.611243 107.678983 2.032130945 -0.029353 161 66 SH1386 1386 Leu1 tRNA 1 13 418.346461 705.908809 562.127635 2.749834936 -0.008173 161 67 SH6148 6148 snR39B snR39B 81 93 79.902634 204.310364 142.106499 2.15261394 0.410495 161 68 SH14513 14513 MT 21S rRNA 21S rRNA3 105.597179 420.233392 105.597179 315.636213 210.616696 2.323492796 -0.176691 161 69 SH20063 20063 YBR230C spliced 29.124042 156.898527 93.0112845 1.968535642 -0.085388 161 70 SH9320 9320 RUF1 RUF1 176 193 31.192579 139.498585 85.345582 1.931181044 0.152233 161 71 SH17409 17409 YIL106W_9_166412_167441_INTRON_21_105 5' exon 29.305972 166.714386 29.305972 138.408414 83.857193 1.923540321 0.026969 161 72 SH2271 2271 Phe2 5' flank 29.363971 134.459119 81.911545 1.913345118 0.053692 161 73 SH640 640 Gln2 5' flank - tRNA3 5' flank 3 35.34454 181.859824 108.602182 2.035838551 0.069056 161 74 SH3302 3302 Thr2 3' flank 29.41814 181.039009 105.2285745 2.022133687 -0.1936 161 75 SH14370 14370 MT ORF9 and ORF10 (hypothetical) intergenic / ORF10 31.414463 184.229851 31.414463 153.815388 92.6149255 1.966680982 0.087798 161 76 SH3654 3654 Val2 tRNA 11 26 481.606574 742.25793 611.932252 2.786703343 0.08444 161 77 SH18721 18721 YNL130C_14_381156_379555_INTRON_30_470 3' exon 31.455098 190.616174 31.455098 160.161076 95.808087 1.981402169 0.056048 161 78 SH21040 21040 YMR133W spliced 29.496252 161.95371 95.724981 1.981025289 -0.084722 161 79 SH6591 6591 snR47 snR47 61 79 1294.751068 1582.871092 1438.81108 3.158003774 0.124222 161 80 SH11325 11325 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3511 3524 6958.047306 6735.191733 6846.61952 3.835476194 0.036003 161 81 SH20097 20097 YDL029W spliced 31.540133 144.821904 88.1810185 1.945375111 0.14489 161 82 SH7725 7725 snoRNA cluster1 intergenic 31.537545 171.633903 31.537545 141.096358 86.3169515 1.936096094 0.165832 161 83 SH19692 19692 Negative Control 29.538445 168.203765 98.871105 1.995069388 -0.11243 161 84 SH16053 16053 YDL191W_4_117665_118518_INTRON_4_494 intron/exon 29.531754 169.304609 29.531754 140.772855 85.1523045 1.930196406 0.029932 161 85 SH804 804 Glu1 tRNA 36 48 865.439237 1025.148706 945.2939715 2.975566888 0.298032 161 86 SH20080 20080 YCR031C spliced 29.540404 152.991967 91.2661855 1.960309899 -0.035504 161 87 SH5032 5032 snR10 snR10 191 205 33.536328 139.367628 86.451978 1.936774934 0.303347 161 88 SH2578 2578 Pro2 3' flank 29.556059 154.625742 92.0909005 1.96421672 -0.043009 161 89 SH12823 12823 MT COX1 COX1ai1 31.529642 226.351945 31.529642 195.822303 113.6759725 2.055668678 -0.19259 161 90 SH17702 17702 YKL081W_11_282533_284097_INTRON_206_531 exon/intron 27.502263 179.862838 27.502263 153.360575 90.431419 1.956319346 -0.18676 161 91 SH9883 9883 RUF5-1 RUF5-1 221 235 37.323314 169.590818 103.457066 2.014760158 0.252178 161 92 SH7468 7468 snR71 5' 28.268535 138.89357 83.5810525 1.922107836 -0.051666 161 93 SH8327 8327 snoRNA cluster4 intergenic 63.495585 248.502897 63.495585 186.007312 124.7514485 2.096045597 0.420845 161 94 SH2635 2635 Pro3 3' flank 30.806938 172.662543 101.7347405 2.007469282 -0.059237 161 95 SH19527 19527 CBP1 1.2 28.638535 145.788473 87.213504 1.940583736 -0.062035 161 96 SH12367 12367 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.251741 184.339997 32.251741 153.088256 92.6699985 1.966939156 0.146225 161 97 SH231 231 Arg3 11-27 11 27 32.031048 167.908927 99.9699875 1.999869638 0.041969 161 98 SH15864 15864 YDL079C_4_314747_312950_INTRON_413_704 intron 31.853681 195.206392 31.853681 164.352711 98.103196 1.991683156 0.053339 161 99 SH9640 9640 RUF4 5' 31.729741 190.257864 110.9938025 2.04529873 -0.136367 161 100 SH4827 4827 snR8 5' 56.253045 216.571028 136.4120365 2.134852693 0.005423 161 101 SH20621 20621 YHR101C spliced 31.64597 142.32885 86.98741 1.9394564 0.165909 161 102 SH9301 9301 RUF1 RUF1 81 97 29.78459 172.000919 100.8927545 2.003859979 -0.118426 161 103 SH19830 19830 Negative Control 32.68021 158.651739 95.6659745 1.9807575 0.137095 161 104 SH1014 1014 Gly2 61-72 + 3' flank 61 73 29.905621 137.144456 83.5250385 1.921816684 0.076777 162 2 SH8067 8067 snoRNA cluster 2 snR61 33.657419 198.239838 33.657419 165.582419 99.619919 1.998346184 0.148732 162 3 SH6763 6763 snR50 5' - 8 -9 8 33.550782 174.945289 104.2480355 2.01806788 0.072074 162 4 SH15250 15250 MT tRNA fMet 3' 27.460138 179.591647 27.460138 153.131509 90.2958235 1.955667663 -0.188823 162 5 SH19422 19422 YPR132W_16_794960_795762_INTRON_66_430 intron 35.284642 228.292401 35.284642 194.007759 114.6462005 2.059359666 -0.060308 162 6 SH6375 6375 snR43 snR43 116 128 37.094408 167.786616 102.440512 2.01047174 0.262856 162 7 SH13589 13589 MT COX1 3' 29.046139 192.399335 29.046139 164.353196 96.6996675 1.985424981 -0.12855 162 8 SH4735 4735 snR4 3' 32.74699 194.673148 113.710069 2.055798923 -0.137277 162 9 SH8505 8505 snR19 / U1 RNA U1 21 40 29.593536 159.095313 94.3444245 1.97471624 -0.063464 162 10 SH3807 3807 RNaseP RNaseP 1 17 47.530356 195.850802 121.690579 2.085256957 0.110152 162 11 SH16580 16580 YER179W_5_548416_549512_INTRON_133_224 intron/exon 29.967107 188.22607 29.967107 159.258963 94.613035 1.975950974 -0.038263 162 12 SH12471 12471 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 1228.830905 2382.012959 1228.830905 1154.182054 1191.50648 3.076096408 0.55777 162 13 SH5761 5761 snR35 5' - 7 -9 7 36.733708 196.466472 116.60009 2.066698886 -0.059261 162 14 SH16875 16875 YGL187C_7_150529_149708_INTRON_1_342 intron 26.281353 152.762635 26.281353 127.481282 76.8813175 1.885820817 -0.132333 162 15 SH18234 18234 YML026C_13_223828_222987_INTRON_48_448 intron 26.978377 200.430215 26.978377 174.451838 100.7151075 2.003094621 -0.330117 162 16 SH9047 9047 snR17a / U3a 3' 30.447296 159.316593 94.8819445 1.977183576 -0.005565 162 17 SH2426 2426 Phe5 5' flank 32.178267 141.940433 87.05935 1.93981542 0.20274 162 18 SH5574 5574 snR33 snR33 156 174 53.947959 219.171013 136.559486 2.135321873 -0.051704 162 19 SH18246 18246 YML034W_13_209525_212155_INTRON_1921_2046 5' exon 34.128216 228.657137 34.128216 195.528921 114.8285685 2.060049951 -0.100894 162 20 SH1260 1260 Ile2 5' flank - tRNA12 12 34.325985 181.900694 108.1133395 2.033879282 0.033648 162 21 SH16295 16295 YDR450W_4_1359912_1360787_INTRON_48_482 intron 27.229583 208.680169 27.229583 182.450586 104.8400845 2.020527362 -0.347199 162 22 SH16480 16480 YER102W_5_362729_363698_INTRON_1_360 intron 31.139236 214.589288 31.139236 184.450052 107.794644 2.032597183 -0.106557 162 23 SH12562 12562 MT_15S MT_15S 27.645138 196.670951 27.645138 170.025813 98.8354755 1.994912856 -0.258632 162 24 SH4581 4581 U3b (snR17b) 461-462 + 3' 461 27.825146 148.972626 88.398886 1.946446792 -0.139555 162 25 SH16911 16911 YGL232W_7_62074_63001_INTRON_58_115 3' exon 27.969841 196.791154 27.969841 169.821313 98.895577 1.995176869 -0.233424 162 26 SH16450 16450 YER074W-A_0_5_307649_INTRON_95_196 5' exon 28.075195 182.564469 28.075195 155.489274 91.7822345 1.962758627 -0.154196 162 27 SH3571 3571 Tyr2 3' flank 31.935674 171.950591 101.9431325 2.008357974 0.012229 162 28 SH2471 2471 Phe5 3' flank 35.775551 190.595596 113.1855735 2.053791076 -0.011887 162 29 SH18964 18964 YOL127W_15_80347_81189_INTRON_14_427 intron/exon 34.82895 223.692751 34.82895 189.863801 112.3463755 2.050559066 -0.022481 162 30 SH4736 4736 snR4 3' 33.851706 180.184688 107.018197 2.02945763 0.032975 162 31 SH10670 10670 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 236 253 43.295835 185.133769 114.214802 2.057722391 0.180385 162 32 SH3188 3188 Ser5 tRNA 61 76 663.230144 1243.278288 953.254216 2.979208735 -0.351691 162 33 SH17241 17241 YHR079C-A_8_262554_262193_INTRON_114_199 intron 27.981795 153.839872 27.981795 126.858077 77.419936 1.888852808 0.000668 162 34 SH17185 17185 YHR021C_8_148660_147862_INTRON_4_553 intron 27.910408 174.791533 27.910408 147.881125 87.8957665 1.943967958 -0.127381 162 35 SH7843 7843 snoRNA cluster1 snR74 46.657663 263.620339 46.657663 217.962676 132.3101695 2.121593226 -0.14142 162 36 SH2113 2113 Met1 5' flank 33.439105 157.044727 95.241916 1.978828124 0.190353 162 37 SH14318 14318 MT VAR1 includes 5’ processing site VAR1 29.685317 200.69202 29.685317 172.006703 100.84601 2.00365872 -0.124701 162 38 SH11488 11488 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4326 4343 65.53079 219.84469 142.68774 2.154386659 0.09431 162 39 SH17251 17251 YHR097C_8_298611_297387_INTRON_126_249 intron 33.55754 184.419739 33.55754 151.862199 92.7098695 1.96712597 0.231056 162 40 SH9502 9502 RUF2 3' 29.891236 166.455965 98.1736005 1.991994719 -0.079329 162 41 SH19163 19163 YPL075W_16_412249_415357_INTRON_9_759 intron 30.000759 221.608887 30.000759 192.608128 111.3044435 2.046512503 -0.224207 162 42 SH9096 9096 snR14 / U4 RNA U4 96 112 28.207571 137.978013 83.092792 1.919563352 -0.051059 162 43 SH3146 3146 Ser4 3' flank 28.295427 154.756631 91.526029 1.96154462 -0.134154 162 44 SH3782 3782 Val4 3' flank 30.276859 142.948383 86.612621 1.937581181 0.070459 162 45 SH9170 9170 snR7 U5 RNA U5 121 137 38.003968 245.577787 141.7908775 2.15164829 -0.541057 162 46 SH396 396 Asn1 61-73 61 73 228.99725 481.649011 355.3231305 2.55062348 -0.096874 162 47 SH10701 10701 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 391 408 32.331869 148.465996 90.3989325 1.956163302 0.176211 162 48 SH6770 6770 snR50 snR50 26 42 32.369233 153.356223 92.862728 1.967841438 0.152355 162 49 SH7508 7508 snR71 3' 30.48831 178.992961 104.7406355 2.020115205 -0.115256 162 50 SH5952 5952 snR36 snR36 216 232 35.369229 187.221228 111.2952285 2.046476545 0.018935 162 51 SH6540 6540 snR46 191-197 + 3' 191 30.61592 155.476777 93.0463485 1.968699334 0.02566 162 52 SH7358 7358 snR68 snR68 11 28 32.645995 157.061532 94.8537635 1.977054567 0.145372 162 53 SH21117 21117 YNL096C spliced 28.866993 166.801956 97.8344745 1.990491917 -0.15337 162 54 SH16000 16000 YDL137W_4_216158_217074_INTRON_1_332 intron 38.747427 231.245396 38.747427 193.497969 116.122698 2.064917118 0.011655 162 55 SH20991 20991 YML073C spliced 35.941892 207.202379 121.5721355 2.084834045 -0.190552 162 56 SH9428 9428 RUF2 5' - 3 -19 3 33.101486 184.526948 108.814217 2.036685641 -0.034055 162 57 SH11454 11454 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4156 4171 32741.82679 29210.51439 30976.17059 4.491027727 -0.29131 162 58 SH10335 10335 RUF7 RUF7 286 302 37.15758 183.376096 110.266838 2.042444921 0.099028 162 59 SH21939 21939 copy of SH2 35.170219 173.549236 104.3597275 2.018532936 0.142064 162 60 SH20342 20342 YER093C-A spliced 33.143554 199.934279 116.5389165 2.066470976 -0.170131 162 61 SH6603 6603 snR47 3' 36.990514 212.155846 124.57318 2.095424551 -0.225422 162 62 SH6441 6441 snR45 snR45 51 68 29.044452 149.884263 89.4643575 1.951650047 -0.054017 162 63 SH19721 19721 Negative Control 32.864921 162.5725 97.7187105 1.989977727 0.122828 162 64 SH7084 7084 snR63 5' 30.846861 138.227913 84.537387 1.92704882 0.135909 162 65 SH21069 21069 YMR225C spliced 30.818619 170.276298 100.5474585 2.002371098 -0.044389 162 66 SH4393 4393 telomerase RNA telomerase 1001 1022 28.888439 152.675639 90.782039 1.957999933 -0.080143 162 67 SH3840 3840 RNaseP RNaseP 166 182 1102.43163 964.743161 1033.587396 3.014347205 0.704829 162 68 SH6626 6626 snR48 5' 30.983056 135.143625 83.0633405 1.919409393 0.162773 162 69 SH14743 14743 MT ORF11; tRNA Leu; tRNA Gln 5' 35.016984 228.754031 35.016984 194.737047 114.8770155 2.060233144 -0.073867 162 70 SH9085 9085 snR14 / U4 RNA U4 41 58 37.106556 142.352506 89.729531 1.952935398 0.484692 162 71 SH18935 18935 YOL121C_15_92849_92025_INTRON_21_410 intron 29.30724 193.017014 29.30724 164.709774 97.008507 1.986809821 -0.111733 162 72 SH11725 11725 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5511 5526 35.309921 171.475423 103.392672 2.014489759 0.167098 162 73 SH16403 16403 YER056C-A_5_270183_269421_INTRON_38_434 intron 5839.516779 13281.68018 5839.516779 7443.1634 6641.34009 3.82225572 -0.349852 162 74 SH4529 4529 U3b (snR17b) U3b 201 217 82.317681 250.739999 166.52884 2.221489457 0.026688 162 75 SH2171 2171 Met2 5' flank - tRNA3 3 33.445008 170.329515 101.8872615 2.00811989 0.108179 162 76 SH16358 16358 YEL012W_5_131772_132551_INTRON_6_128 5' exon 31.488717 192.787855 31.488717 162.299138 96.8939275 1.98629656 0.044571 162 77 SH445 445 Asp1 tRNA 46 60 47.481902 175.867157 111.6745295 2.047954131 0.35312 162 78 SH15558 15558 YBR082C_2_407127_406586_INTRON_48_142 intron 29.563293 170.162951 29.563293 141.599658 85.5814755 1.93237977 0.027616 162 79 SH12290 12290 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.57949 189.275745 31.57949 158.696255 95.1378725 1.978353435 0.072761 162 80 SH17812 17812 YKR057W_11_551293_551878_INTRON_25_346 intron 33.583032 195.261076 33.583032 162.678044 98.130538 1.99180418 0.162575 162 81 SH16375 16375 YER003C_5_159117_157735_INTRON_32_124 intron 31.575693 207.889796 31.575693 177.314103 104.444898 2.01888723 -0.04017 162 82 SH979 979 Gly1 3' flank 33.538939 188.916517 111.227728 2.046213066 -0.057999 162 83 SH18725 18725 YNL147W_14_350937_351380_INTRON_19_138 exon/intron 31.506103 206.502575 31.506103 175.996472 103.7512875 2.015993495 -0.036716 162 84 SH17085 17085 YHL001W_8_104270_105084_INTRON_130_527 intron 106.268162 386.673025 106.268162 281.404863 193.8365125 2.287435587 0.046775 162 85 SH1768 1768 Leu7 3' flank 29.450868 179.56454 104.507704 2.019148307 -0.183213 162 86 SH9812 9812 RUF4 3' 31.417615 172.247436 101.8325255 2.007886515 -0.020097 162 87 SH15438 15438 YBL072C_2_89435_88518_INTRON_1_308 intron 29.425988 173.105892 29.425988 144.679904 87.052946 1.939783473 0.001041 162 88 SH1800 1800 Leu8 tRNA-exon/intron 26 41 106.045009 304.828706 205.4368575 2.312678363 -0.106624 162 89 SH7541 7541 snR79 snR79 46 62 31.375508 167.443041 99.4092745 1.997426904 0.006137 162 90 SH13168 13168 MT COX1 intronic 29.345065 184.070516 29.345065 155.725451 92.535258 1.96630724 -0.063619 162 91 SH13938 13938 MT COB Cytbi3 29.258556 199.508128 29.258556 171.249572 100.254064 2.001101987 -0.147288 162 92 SH11941 11941 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6591 6608 40.926022 167.846674 104.386348 2.018643704 0.360089 162 93 SH13304 13304 MT COX1 COX1-ai5a 28.967136 177.343204 28.967136 149.376068 89.171602 1.950226569 -0.056952 162 94 SH10471 10471 RUF8 RUF8 281 298 29.744398 192.851435 111.2979165 2.046487034 -0.237201 162 95 SH2179 2179 Met2 tRNA 26 40 34.34916 182.214224 108.281692 2.034555033 0.03155 162 96 SH9611 9611 RUF3 3' 30.280896 151.657696 90.969296 1.958894834 0.022972 162 97 SH11281 11281 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3291 3309 164.735561 337.935863 251.335712 2.400254201 0.15797 162 98 SH9149 9149 snR7 U5 RNA U5 16 30 5827.351891 6073.436148 5950.39402 3.774545725 -0.029015 162 99 SH15369 15369 YBL027W_2_168385_169338_INTRON_3_386 intron 50.628775 290.484114 50.628775 240.855339 145.742057 2.163584895 -0.300518 162 100 SH12146 12146 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7616 7634 37.303006 202.238052 119.770529 2.078349968 -0.111439 162 101 SH3233 3233 Thr1 tRNA 21 33 33.514143 172.677114 103.0956285 2.013240251 0.092786 162 102 SH16047 16047 YDL191W_4_117665_118518_INTRON_4_494 intron 30.707059 180.703768 30.707059 150.996709 90.851884 1.958333938 0.055514 162 103 SH4521 4521 U3b (snR17b) U3b 161 177 33.596305 169.963634 101.7799695 2.007662316 0.118801 162 104 SH17769 17769 YKL180W_11_109271_110131_INTRON_310_615 exon/intron 39.397593 227.264366 39.397593 188.866773 114.132183 2.057408124 0.076188 163 2 SH13466 13466 MT COX1 intronic 29.513906 174.816243 29.513906 146.302337 87.9081215 1.944029 -0.001366 163 3 SH306 306 Arg4 3' flank 29.4263 169.441193 99.4337465 1.997533803 -0.126262 163 4 SH403 403 Asn1 3' flank 29.322558 140.71673 85.019644 1.929519282 0.015271 163 5 SH8981 8981 snR17a / U3a U3a 191 207 29.200381 130.761407 79.980894 1.902986254 0.063658 163 6 SH19196 19196 YPL081W_16_404945_406039_INTRON_8_508 intron 29.05622 183.870039 29.05622 155.813819 92.4350195 1.965836537 -0.084607 163 7 SH18275 18275 YML056C_13_164176_162194_INTRON_461_868 intron 48.416518 243.783529 48.416518 196.367011 122.3917645 2.087752196 0.115968 163 8 SH19314 19314 YPL198W_16_173151_174701_INTRON_12_420 intron 32.553898 206.43325 32.553898 174.879352 103.716625 2.015848376 0.030912 163 9 SH8966 8966 snR17a / U3a U3a 116 138 26.53682 146.255428 86.396124 1.936494259 -0.225053 163 10 SH15410 15410 YBL059C-A_2_110500_110086_INTRON_35_119 intron 31.991359 178.692707 31.991359 147.701348 89.8463535 1.953500456 0.158421 163 11 SH20100 20100 YDL029W spliced 35.434659 180.796452 108.1155555 2.033888184 0.082003 163 12 SH4907 4907 snR9 5' 33.197395 150.218796 91.7080955 1.962407675 0.221528 163 13 SH8552 8552 snR19 / U1 RNA U1 256 270 40.240033 171.032748 105.6363905 2.023813553 0.307176 163 14 SH14189 14189 MT COB Exon6 32.549612 167.924706 32.549612 136.375094 84.462353 1.926663176 0.258955 163 15 SH1578 1578 Leu4 tRNA-intron/exon 61 76 89.770864 250.461034 170.115949 2.230745032 0.109168 163 16 SH14297 14297 MT VAR1 includes 5’ processing site VAR1 26.734089 183.773451 26.734089 158.039362 92.3867255 1.965609575 -0.269842 163 17 SH7568 7568 snR189 5' 24.879529 106.806402 65.8429655 1.818509383 -0.096585 163 18 SH3765 3765 Val4 tRNA 51 65 28.495391 160.038102 94.2667465 1.974358518 -0.146725 163 19 SH18078 18078 YLR344W_12_819312_820142_INTRON_20_466 intron 30.402696 177.902092 30.402696 148.499396 89.451046 1.951585423 0.048352 163 20 SH19315 19315 YPL198W_16_173151_174701_INTRON_12_420 intron 39.675704 222.292885 39.675704 183.617181 111.6464425 2.047844889 0.142557 163 21 SH20606 20606 YHR077C spliced 94.284742 274.705026 184.494884 2.265984328 -0.023292 163 22 SH13045 13045 MT COX1 COX1ai2 27.350127 186.612652 27.350127 160.262525 93.806326 1.972232127 -0.232991 163 23 SH3915 3915 RNase MRP 5' - 8 8 31.269893 168.495643 99.882768 1.999490569 -0.006533 163 24 SH8806 8806 LSR1 / U2 RNA U2 671 689 31.478433 148.682389 90.080411 1.954630359 0.119515 163 25 SH11671 11671 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5241 5258 16476.07232 13189.4698 14832.77106 4.171222293 0.082093 163 26 SH17774 17774 YKL180W_11_109271_110131_INTRON_310_615 intron 28.006844 205.797885 28.006844 178.791041 103.3989425 2.014516097 -0.272809 163 27 SH17219 17219 YHR041C_8_189855_189122_INTRON_15_115 intron 29.980873 183.146753 29.980873 154.16588 92.0733765 1.96413407 -0.01098 163 28 SH4515 4515 U3b (snR17b) U3b 131 148 28.140318 166.309079 97.2246985 1.987776605 -0.203883 163 29 SH7323 7323 snR66 3' 30.064718 124.800272 77.432495 1.888923253 0.161884 163 30 SH11451 11451 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4141 4158 6611.459703 4191.849123 5401.654413 3.732526795 0.724095 163 31 SH8053 8053 snoRNA cluster 2 intergenic 31.95488 209.493566 31.95488 178.538686 105.246783 2.02220883 -0.024847 163 32 SH19268 19268 YPL143W_16_282121_282969_INTRON_20_544 intron 42.371771 234.391018 42.371771 193.019247 117.695509 2.070759891 0.072117 163 33 SH2132 2132 Met1 tRNA 46 60 29.985344 173.532504 101.758924 2.007572506 -0.114875 163 34 SH18283 18283 YML067C_13_140214_139063_INTRON_32_124 exon/intron 29.941232 163.16186 29.941232 134.220628 82.08093 1.914242268 0.096077 163 35 SH20021 20021 YBR089C-A spliced 28.016864 165.616195 96.8165295 1.985949511 -0.209626 163 36 SH14119 14119 MT COB intronic 29.884518 192.064774 29.884518 163.180256 96.532387 1.984673045 -0.063695 163 37 SH11030 11030 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2036 2049 27873.32089 27026.90435 27450.11262 4.438544131 -0.376813 163 38 SH10903 10903 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1401 1421 9252.020265 6447.18471 7849.602488 3.894847664 0.474274 163 39 SH13455 13455 MT COX1 intronic 35.663926 196.884629 35.663926 162.220703 98.9423145 1.995382065 0.272672 163 40 SH20772 20772 YKL002W spliced 32.90119 194.301634 113.601412 2.055383729 -0.128426 163 41 SH706 706 Gln3 61-72 + 3' flank 61 3' flank 53.030262 217.014501 135.0223815 2.130405764 -0.043695 163 42 SH9744 9744 RUF4 RUF4 496 510 30.203577 164.540859 97.372218 1.988435063 -0.048382 163 43 SH12772 12772 MT COX1 COX1ai1 28.353725 188.442608 28.353725 161.088883 94.721304 1.976447668 -0.162369 163 44 SH8993 8993 snR17a / U3a U3a 251 266 32.225787 142.641339 87.433563 1.941678177 0.201812 163 45 SH13751 13751 MT COB Exon1 26.519467 131.82924 26.519467 106.309773 66.41462 1.822263692 0.03783 163 46 SH2350 2350 Phe3 76-91 + 3' flank 76 57.339526 220.459872 138.899699 2.142701305 -0.017907 163 47 SH1353 1353 Ile3 3' flank 30.4224 145.896409 88.1594045 1.945268648 0.064022 163 48 SH17387 17387 YIL069C_9_232366_231550_INTRON_4_412 intron 30.469358 199.3484 30.469358 169.879042 100.1742 2.000755883 -0.063322 163 49 SH20136 20136 YDL083C spliced 30.529139 173.26279 101.8959645 2.008156984 -0.079696 163 50 SH11793 11793 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5851 5868 1442.589356 1432.147383 1437.36837 3.157568084 0.423467 163 51 SH15166 15166 MT tRNA Val tRNA / 3' 28.756916 185.255296 28.756916 157.49838 93.127648 1.969078635 -0.114806 163 52 SH12317 12317 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 181.09813 511.570591 181.09813 331.472461 256.2852955 2.408723689 0.294809 163 53 SH4834 4834 snR8 5' 28.960782 132.966133 80.9634575 1.908289046 0.033275 163 54 SH13459 13459 MT COX1 intronic 31.026835 266.063868 31.026835 236.037033 133.531934 2.125585139 -0.578354 163 55 SH6937 6937 snR58 snR58 46 62 31.132459 176.663344 103.8979015 2.016606776 -0.062861 163 56 SH16414 16414 YER056C-A_5_270183_269421_INTRON_38_434 intron 29.246763 150.254561 29.246763 122.007798 75.6272805 1.878678484 0.12391 163 57 SH17247 17247 YHR097C_8_298611_297387_INTRON_126_249 exon/intron 34.234232 190.459852 34.234232 157.22562 95.729926 1.981047723 0.233114 163 58 SH20950 20950 YLR448W spliced 33.261992 173.973059 103.6175255 2.015433217 0.071122 163 59 SH14378 14378 MT ORF9 and ORF10 (hypothetical) ORF10 29.286955 173.664583 29.286955 145.377628 87.3322915 1.941174856 -0.012682 163 60 SH15728 15728 YBR230C_2_680008_679507_INTRON_12_108 5' exon 89.759876 333.624139 89.759876 244.864263 167.3120695 2.223527271 0.153325 163 61 SH509 509 Asp2 3' flank 35.041751 182.40601 108.7238805 2.036324945 0.053689 163 62 SH18469 18469 YMR143W_13_551927_552902_INTRON_25_568 intron 32.971598 221.600266 32.971598 189.628668 111.300133 2.046495683 -0.084786 163 63 SH513 513 Asp2 3' flank 30.922466 149.240411 90.0814385 1.954635313 0.079499 163 64 SH14516 14516 MT 21S rRNA 21S rRNA3 33.779709 181.88931 33.779709 149.109601 91.444655 1.961158326 0.261976 163 65 SH8351 8351 snoRNA cluster4 3' 62.089303 289.250494 62.089303 228.161191 145.125247 2.161742972 -0.026538 163 66 SH5738 5738 snR34 3' 40.589436 163.030287 101.8098615 2.007789847 0.417655 163 67 SH17281 17281 YHR141C_8_382752_381991_INTRON_5_445 intron 31.86901 174.08279 31.86901 143.21378 87.541395 1.942213463 0.175464 163 68 SH15700 15700 YBR220C_2_663261_662457_INTRON_302_722 intron 30.978091 216.289629 30.978091 186.311538 108.6448145 2.036009003 -0.129717 163 69 SH5040 5040 snR10 231-245 + 3' 231 31.078698 187.752877 109.4157875 2.03907999 -0.138837 163 70 SH2513 2513 Pro1 tRNA 56 68 39.06367 177.239094 108.151382 2.034032073 0.208555 163 71 SH21587 21587 copy of SH6044 37.198314 181.277849 109.2380815 2.038374064 0.124867 163 72 SH4470 4470 U3b (snR17b) 5' 29.365329 154.11014 91.7377345 1.962548011 -0.053739 163 73 SH3048 3048 Ser3 5' flank 39.341552 201.187797 120.2646745 2.08013808 -0.067135 163 74 SH5809 5809 snR35 snR35 231 247 53.357011 212.516522 132.9367665 2.123645111 0.006438 163 75 SH10248 10248 RUF6 3' 31.496716 156.17736 93.837038 1.972374291 0.08088 163 76 SH3041 3041 Ser3 5' flank 37.525115 167.998727 102.761921 2.011832214 0.274554 163 77 SH2202 2202 Met2 3' flank 29.597739 154.340346 91.9690425 1.963641665 -0.038588 163 78 SH3334 3334 Thr3 tRNA 16 30 35.630518 175.043331 105.3369245 2.022580634 0.143175 163 79 SH11459 11459 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4181 4196 1951.032569 1413.881602 1682.457086 3.225943995 0.838674 163 80 SH15899 15899 YDL083C_4_307788_306925_INTRON_25_456 intron 29.657945 204.891675 29.657945 176.23373 102.9458375 2.012608791 -0.151091 163 81 SH9390 9390 RUF1 RUF1 526 545 45.636454 203.444001 124.5402275 2.095309655 -0.001269 163 82 SH13188 13188 MT COX1 Exon4 27.585761 169.409715 27.585761 142.823954 85.2048575 1.930464354 -0.124905 163 83 SH13445 13445 MT COX1 intronic 51.448299 255.46838 51.448299 205.020081 128.23419 2.108003833 0.060323 163 84 SH19235 19235 YPL090C_16_378390_377286_INTRON_7_400 intron 33.410538 208.69356 33.410538 176.283022 104.84678 2.020555097 0.054202 163 85 SH5010 5010 snR10 snR10 81 97 57.197175 197.866575 127.531875 2.105618745 0.211207 163 86 SH12880 12880 MT COX1 COX1ai1 29.334851 176.91513 29.334851 148.580279 88.957565 1.949182887 -0.026292 163 87 SH6502 6502 snR46 snR46 1 13 31.277997 151.843326 91.5606615 1.961708922 0.089217 163 88 SH13156 13156 MT COX1 intronic 33.225235 199.496816 33.225235 167.271581 100.248408 2.001077485 0.11426 163 89 SH11794 11794 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5856 5873 2717.92641 2128.27643 2423.10142 3.384371592 0.6355 163 90 SH15905 15905 YDL083C_4_307788_306925_INTRON_25_456 intron 568.20289 1629.924396 568.20289 1062.721506 815.462198 2.911403833 -0.2934 163 91 SH13528 13528 MT COX1 intronic 31.080876 187.763196 31.080876 157.68232 94.381598 1.974887326 0.045529 163 92 SH7637 7637 snR189 3' 29.006968 166.418058 97.712513 1.989950183 -0.141465 163 93 SH1571 1571 Leu4 tRNA-exon/intron 26 42 30.807963 180.241925 105.524944 2.02335513 -0.102823 163 94 SH7057 7057 snR62 snR62 76 95 34.499758 173.795001 104.1473795 2.017648347 0.116619 163 95 SH19509 19509 ACT1 29.477347 158.239854 93.8586005 1.972474074 -0.06726 163 96 SH327 327 Arg5 5' flank 30.251489 143.153554 86.7025215 1.938031728 0.067576 163 97 SH8405 8405 snoRNA cluster 5 snR190 33.887995 198.047028 33.887995 165.159033 99.523514 1.997925702 0.164096 163 98 SH12766 12766 MT COX1 COX1ai1 35.633644 206.105933 35.633644 171.472289 103.5529665 2.015162545 0.178062 163 99 SH1740 1740 Leu7 5' flank - tRNA10 10 326.050367 549.700282 437.8753245 2.641350472 0.101835 163 100 SH10480 10480 RUF8 RUF8 326 342 33.578263 173.65996 103.6191115 2.015439864 0.085498 163 101 SH19796 19796 Negative Control 33.566143 166.186801 99.876472 1.999463193 0.139954 163 102 SH14623 14623 MT 21S rRNA Sce1 endonuc 29.807457 190.57285 29.807457 161.765393 95.786425 1.981303965 -0.061999 163 103 SH7995 7995 snoRNA cluster 2 intergenic 31.740286 196.458772 31.740286 165.718486 98.729386 1.994446436 0.038264 163 104 SH5096 5096 snR11 snR11 81 97 37.520708 159.620185 98.5704465 1.993746724 0.360742 164 2 SH2230 2230 Phe1 tRNA-exon/intron 26 42 39.422459 211.620832 125.5216455 2.098718624 -0.181438 164 3 SH14744 14744 MT ORF11; tRNA Leu; tRNA Gln 5' 33.295021 240.524274 33.295021 208.229253 120.762137 2.08193079 -0.255439 164 4 SH20188 20188 YDL219W spliced 31.184224 147.987526 89.585875 1.95223954 0.103822 164 5 SH21443 21443 TH299 - control cDNA - flipped; WTP_225 33.005099 183.35683 108.1809645 2.034150849 -0.026814 164 6 SH18010 18010 YLR287C-A_12_713158_712537_INTRON_4_433 intron 30.872154 172.891764 30.872154 143.01961 86.945882 1.939249017 0.110611 164 7 SH7465 7465 snR71 5' 30.677113 146.387456 88.5322845 1.947101671 0.078603 164 8 SH3670 3670 Val2 3' flank 28.529709 143.739853 86.134781 1.935178554 -0.059025 164 9 SH18655 18655 YNL112W_14_413636_416278_INTRON_1274_2275 intron 45.494104 226.807959 45.494104 182.313855 113.9039795 2.056538897 0.245184 164 10 SH18855 18855 YNR053C_14_723108_721117_INTRON_811_1341 intron 33.701725 217.829738 33.701725 185.128013 109.414869 2.039076345 -0.018015 164 11 SH1605 1605 Leu4 3' flank 54.026157 212.775412 133.4007845 2.125158384 0.012374 164 12 SH12474 12474 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 60131.66202 85739.4743 60131.66202 25608.81228 42870.23715 4.632155886 0.706738 164 13 SH2509 2509 Pro1 tRNA 36 48 393.417511 570.377574 481.8975425 2.682954712 0.268885 164 14 SH17152 17152 YHR012W_8_129473_130440_INTRON_49_167 intron 37.872871 210.154121 37.872871 173.28125 105.5770605 2.023569566 0.233361 164 15 SH14604 14604 MT 21S rRNA Sce1 endonuc 33.080551 190.011601 33.080551 157.93105 95.5058005 1.980029749 0.164482 164 16 SH15591 15591 YBR084C-A_2_415219_414144_INTRON_3_508 3' exon 41.017068 212.531376 41.017068 172.514308 106.765688 2.028431703 0.301922 164 17 SH681 681 Gln3 5' flank 33.741915 147.232311 90.487113 1.956586732 0.27156 164 18 SH6566 6566 snR47 5' 48.152861 183.414379 115.78362 2.063647124 0.266026 164 19 SH5919 5919 snR36 snR36 51 70 24.882337 113.27993 69.0811335 1.839359455 -0.145848 164 20 SH871 871 Glu2 3' flank 30.441825 163.425902 96.9338635 1.986475523 -0.026568 164 21 SH4770 4770 snR5 snR5 21 35 34.301391 178.71067 106.5060305 2.027374199 0.062645 164 22 SH14480 14480 MT 21S rRNA 21S rRNA3 29.056841 167.216689 29.056841 139.159848 84.1083445 1.924839085 0.004769 164 23 SH14207 14207 MT ATP9 5' 27.43012 164.369136 27.43012 137.939016 82.684568 1.917424462 -0.109687 164 24 SH14867 14867 MT tRNA Ser2; tRNA Arg2 3' 25.760408 179.525991 25.760408 154.765583 90.2629955 1.955509742 -0.331667 164 25 SH9070 9070 snR14 / U4 RNA 5' 27.782027 142.717594 85.2498105 1.930693422 -0.109393 164 26 SH15183 15183 MT COX3 cox3 31.675046 193.142827 31.675046 162.467781 97.0714135 1.987091354 0.054546 164 27 SH15233 15233 MT COX3 3' 31.789552 202.466315 31.789552 171.676763 101.7331575 2.007462524 0.005275 164 28 SH21849 21849 copy of SH17599 31.874921 187.647479 109.7612 2.040448846 -0.107586 164 29 SH1166 1166 His1 tRNA 51 66 1114.554689 1815.183044 1464.868867 3.165798749 -0.287786 164 30 SH14676 14676 MT 21S rRNA 21S rRNA4 31.977638 185.725972 31.977638 154.748334 93.362986 1.970174733 0.119775 164 31 SH1649 1649 Leu5 111-115 + 3' flank 111 28.200414 140.550242 84.375328 1.926215474 -0.065987 164 32 SH12802 12802 MT COX1 COX1ai1 28.208115 164.540942 28.208115 137.332827 82.770471 1.917875427 -0.047365 164 33 SH7490 7490 snR71 snR71 66 85 32.007132 184.922026 108.464579 2.035287935 -0.077938 164 34 SH4882 4882 snR8 3' 31.998051 161.8676 96.9328255 1.986470872 0.077272 164 35 SH5514 5514 snR32 3' 31.990599 176.300453 104.145526 2.017640618 -0.009941 164 36 SH14426 14426 MT 21S rRNA 21S rRNA3 31.992712 234.117314 31.992712 203.124602 117.558657 2.070254616 -0.236905 164 37 SH16503 16503 YER117W_5_396765_397649_INTRON_43_513 intron 52.989837 226.834462 52.989837 174.844625 113.917231 2.05658942 0.434513 164 38 SH2754 2754 Pro5 3' flank 30.140846 178.57167 104.356258 2.018518498 -0.134288 164 39 SH2750 2750 Pro5 3' flank 28.280223 162.59104 95.4356315 1.979710552 -0.175275 164 40 SH6894 6894 snR56 3' 28.326712 135.989328 82.15802 1.914649964 -0.030868 164 41 SH4551 4551 U3b (snR17b) U3b 311 330 32.193999 174.257322 103.2256605 2.01378767 0.01375 164 42 SH3136 3136 Ser4 tRNA 86 101 23733.51203 23375.40427 23554.45815 4.372073118 -0.354771 164 43 SH7820 7820 snoRNA cluster1 intergenic 34.180492 191.094073 34.180492 157.913581 96.0470365 1.982483969 0.225741 164 44 SH12442 12442 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.965257 231.155561 39.965257 192.190304 116.0777805 2.064749095 0.046861 164 45 SH11110 11110 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2436 2454 30.383306 163.609062 96.996184 1.986754649 -0.031469 164 46 SH21592 21592 copy of SH6253 43.873284 218.347558 131.110421 2.117637212 -0.185371 164 47 SH18584 18584 YNL050C_14_534978_534075_INTRON_18_108 5' exon 27.562564 170.690016 27.562564 144.127452 85.845008 1.933715045 -0.133757 164 48 SH8049 8049 snoRNA cluster 2 intergenic 30.498502 215.760767 30.498502 186.262265 108.3803835 2.034950683 -0.155077 164 49 SH4693 4693 snR4 snR4 1 18 52.83631 211.42315 132.12973 2.121000548 0.011033 164 50 SH20965 20965 YML026C spliced 32.597255 163.815513 98.206384 1.99213972 0.099801 164 51 SH9286 9286 RUF1 RUF1 6 22 30.765362 168.538454 99.651908 1.998485618 -0.037199 164 52 SH13082 13082 MT COX1 COX1ai3 30.880347 211.176353 30.880347 181.296006 106.0881765 2.025666985 -0.10436 164 53 SH17000 17000 YGR118W_7_726968_727725_INTRON_66_385 intron 27.086854 160.064296 27.086854 133.977442 80.532148 1.905969283 -0.111436 164 54 SH2370 2370 Phe4 5' flank 29.148624 175.919524 102.534074 2.010868214 -0.181661 164 55 SH19994 19994 YBR048W spliced 31.210652 191.687575 111.4491135 2.047076618 -0.16876 164 56 SH18599 18599 YNL069C_14_494998_493953_INTRON_29_477 intron 31.282856 216.004606 31.282856 185.72175 108.502303 2.035438956 -0.112639 164 57 SH10278 10278 RUF7 RUF7 1 18 31.320579 171.463429 101.392004 2.006003707 -0.021245 164 58 SH18348 18348 YML124C_13_23684_22049_INTRON_26_323 intron 27.366656 160.802946 27.366656 134.43629 80.901473 1.907956429 -0.093134 164 59 SH565 565 Cys1 3' flank 29.304511 142.081663 85.693087 1.932945788 0.006451 164 60 SH1211 1211 Ile1 tRNA 16 30 47.00286 182.989727 114.9962935 2.060683843 0.256308 164 61 SH9687 9687 RUF4 RUF4 211 227 42.917422 221.405485 132.1614535 2.121104806 -0.23066 164 62 SH18468 18468 YMR143W_13_551927_552902_INTRON_25_568 intron 31.01126 208.804264 31.01126 178.793004 104.902132 2.020784315 -0.082327 164 63 SH7166 7166 snR63 3' 28.969085 179.541437 104.255261 2.01809798 -0.213916 164 64 SH7680 7680 snoRNA cluster1 intergenic 44.516346 253.631324 44.516346 210.114978 127.315662 2.104881833 -0.089653 164 65 SH2818 2818 Pro6 3' flank 32.770778 192.157744 112.464261 2.051014534 -0.114461 164 66 SH2530 2530 Pro1 3' flank 34.730038 177.707849 106.2189435 2.026201977 0.087018 164 67 SH2584 2584 Pro2 3' flank 32.833218 142.318 87.575609 1.942383166 0.242404 164 68 SH18231 18231 YML026C_13_223828_222987_INTRON_48_448 intron 29.006895 187.133756 29.006895 159.126861 94.066878 1.97343673 -0.105177 164 69 SH4141 4141 SRP RNA SRP RNA 596 610 40.873189 188.997963 114.935576 2.060454477 0.09862 164 70 SH15860 15860 YDL079C_4_314747_312950_INTRON_413_704 intron 35.089862 240.605845 35.089862 206.515983 120.8029225 2.082077441 -0.200299 164 71 SH13915 13915 MT COB Cytbi3 29.272965 200.213859 29.272965 171.940894 100.6069295 2.002627895 -0.150461 164 72 SH7000 7000 snR60 snR60 81 97 29.347933 157.058107 93.20302 1.969429985 -0.070319 164 73 SH17327 17327 YIL004C_9_348502_347943_INTRON_12_142 intron 35.361911 212.211469 35.361911 177.849558 106.6057345 2.027780567 0.107272 164 74 SH5379 5379 snR31 5' 29.474673 152.511435 90.993054 1.959008242 -0.037578 164 75 SH12916 12916 MT COX1 COX1ai2 31.52566 218.614471 31.52566 188.088811 109.8072355 2.040630958 -0.124748 164 76 SH8474 8474 snoRNA cluster 5 3' 31.592613 185.277754 31.592613 154.685141 93.138877 1.969130997 0.094966 164 77 SH4651 4651 snR3 snR3 171 186 53.711156 220.877665 137.2944105 2.137652857 -0.071537 164 78 SH15351 15351 YBL026W_2_170585_171000_INTRON_55_182 5' exon 29.708221 151.198142 29.708221 122.489921 76.099071 1.881379355 0.152838 164 79 SH8089 8089 snoRNA cluster 2 3' 29.735314 193.514229 29.735314 164.778915 97.2571145 1.98792138 -0.08198 164 80 SH6543 6543 snR46 3' 127.006937 306.190942 216.5989395 2.335656326 0.066853 164 81 SH2137 2137 Met1 71-73 + 3' flank 71 33.692471 164.205991 98.949231 1.995412423 0.159159 164 82 SH14317 14317 MT VAR1 includes 5’ processing site VAR1 27.622174 191.301922 27.622174 164.679748 96.150961 1.982953629 -0.234476 164 83 SH17359 17359 YIL052C_9_257061_256224_INTRON_38_509 intron 29.522449 208.04709 29.522449 179.524641 104.523545 2.019214131 -0.178449 164 84 SH7391 7391 snR68 3' 83.277041 260.434482 171.8557615 2.235164097 -0.03689 164 85 SH1981 1981 Lys2 3' flank 33.282758 174.645203 103.9639805 2.016882899 0.065363 164 86 SH12248 12248 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.144151 218.154161 37.144151 182.01001 109.5770805 2.039719725 0.115057 164 87 SH12046 12046 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7116 7131 35.09858 183.895234 109.496907 2.039401852 0.041909 164 88 SH19172 19172 YPL079W_16_406631_407534_INTRON_12_432 intron 31.111195 227.435835 31.111195 197.32464 114.2179175 2.057734238 -0.221492 164 89 SH7674 7674 snoRNA cluster1 snR78 31.064282 160.838491 31.064282 130.774209 80.9192455 1.908051825 0.1939 164 90 SH1098 1098 Gly4 5' flank 36.886202 190.560796 113.723499 2.055850213 0.01014 164 91 SH7263 7263 snR65 91-100 + 3' 91 30.929217 155.323476 93.1263465 1.969072565 0.047588 164 92 SH8754 8754 LSR1 / U2 RNA U2 411 430 28.879484 137.413898 83.146691 1.91984497 0.001713 164 93 SH15869 15869 YDL079C_4_314747_312950_INTRON_413_704 intron 30.695705 186.061579 30.695705 156.365874 93.5307895 1.9709546 0.026442 164 94 SH1208 1208 Ile1 tRNA 1 13 30.547245 146.799328 88.6732865 1.947792805 0.067523 164 95 SH14092 14092 MT COB Cytbi4 29.431471 176.042583 29.431471 147.611112 88.5212915 1.947047742 -0.014197 164 96 SH13576 13576 MT COX1 Exon 6 32.150849 208.16607 32.150849 177.015221 104.583035 2.019461241 -0.004711 164 97 SH11372 11372 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3746 3766 39.633116 198.456559 119.0448375 2.075710567 -0.031468 164 98 SH4637 4637 snR3 snR3 101 117 56.653063 199.367951 128.010507 2.107245618 0.188021 164 99 SH12414 12414 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.724995 190.462551 33.724995 157.737556 95.7312755 1.981053845 0.201795 164 100 SH21327 21327 YPR043W spliced 56.498006 221.560487 139.0292465 2.143106169 -0.039716 164 101 SH10842 10842 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1096 1119 48.896013 218.566856 133.7314345 2.126233503 -0.115288 164 102 SH17887 17887 YLR048W_12_242233_243350_INTRON_91_449 intron 31.817421 212.12215 31.817421 181.304729 106.561075 2.027598593 -0.051724 164 103 SH21924 21924 copy of SH20399 29.953131 191.450247 110.701689 2.044154247 -0.21672 164 104 SH8042 8042 snoRNA cluster 2 intergenic 31.902308 176.116698 31.902308 145.21439 88.558349 1.947229511 0.166393 165 2 SH18582 18582 YNL044W_14_545264_545873_INTRON_25_103 3' exon 33.338783 213.710346 33.338783 181.371563 107.355173 2.030822976 0.003607 165 3 SH585 585 Gln1 5' flank 29.248516 150.497892 89.873204 1.953630225 -0.042797 165 4 SH7791 7791 snoRNA cluster1 snR75 37.011564 200.973964 37.011564 164.9624 100.986982 2.004265393 0.288823 165 5 SH4296 4296 telomerase RNA telomerase 516 530 30.93686 142.783454 86.860157 1.93882061 0.116295 165 6 SH13575 13575 MT COX1 Exon 6 30.754962 187.250719 30.754962 157.495757 94.1253595 1.973706648 0.024612 165 7 SH15346 15346 YBL018C_2_186436_185960_INTRON_48_122 intron 26.689277 151.02707 26.689277 125.337793 76.013535 1.88089093 -0.086604 165 8 SH4895 4895 snR8 3' 27.443035 158.326383 92.884709 1.967944225 -0.216134 165 9 SH188 188 Arg2 56-68 56 68 45.280276 204.508558 124.894417 2.096543025 -0.017991 165 10 SH3603 3603 Val1 tRNA 11 26 485.446644 818.100331 651.7734875 2.81409669 -0.064761 165 11 SH19804 19804 Negative Control 35.083045 188.182633 111.632839 2.04779197 0.002032 165 12 SH1521 1521 Leu3 tRNA 76 92 1166.931097 1339.306873 1253.118985 3.09799231 0.254067 165 13 SH8341 8341 snoRNA cluster4 snR53 34.408117 193.354714 34.408117 159.946597 97.177357 1.987565083 0.225152 165 14 SH5802 5802 snR35 snR35 196 215 34.113444 190.810757 112.4621005 2.051006191 -0.054489 165 15 SH15705 15705 YBR220C_2_663261_662457_INTRON_302_722 intron 30.272541 180.562044 30.272541 151.289503 90.781022 1.957995068 0.024369 165 16 SH7017 7017 snR60 3' 31.912664 177.546081 104.7293725 2.020068501 -0.021654 165 17 SH17847 17847 YKR094C_11_618384_617630_INTRON_9_376 intron 26.477867 194.566568 26.477867 169.088701 97.783284 1.990264619 -0.343685 165 18 SH6506 6506 snR46 snR46 21 39 26.483556 130.536293 78.5099245 1.89492456 -0.136197 165 19 SH1697 1697 Leu6 tRNA 51 63 3246.963337 4286.427338 3766.695338 3.575960494 -0.234477 165 20 SH13615 13615 MT ATP6 5' 30.292189 204.411828 30.292189 175.119639 102.705914 2.011595452 -0.105092 165 21 SH11020 11020 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1986 2001 21949.1698 21471.21144 21710.19062 4.336663637 -0.32108 165 22 SH11057 11057 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2171 2188 10639.93324 10334.58834 10487.26079 4.020662068 -0.095835 165 23 SH12090 12090 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7336 7351 52.184682 223.235084 137.709883 2.138965109 -0.115992 165 24 SH18603 18603 YNL069C_14_494998_493953_INTRON_29_477 intron 73.090387 319.799904 73.090387 247.709517 160.399952 2.205204234 -0.055665 165 25 SH8602 8602 snR19 / U1 RNA U1 506 525 33.249021 154.493341 93.871181 1.972532282 0.196338 165 26 SH10694 10694 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 356 373 67.328642 222.972136 145.150389 2.161818204 0.087138 165 27 SH7627 7627 snR189 3' 27.924585 119.768068 73.8463265 1.868328896 0.044122 165 28 SH2207 2207 Phe1 5' flank 28.023934 135.635336 81.829635 1.912910614 -0.051469 165 29 SH14319 14319 MT VAR1 includes 5’ processing site VAR1 29.999031 186.129444 29.999031 157.130413 93.564722 1.971112132 -0.025153 165 30 SH791 791 Glu1 5' flank 31.969835 163.69958 97.8347075 1.990492951 0.064189 165 31 SH12099 12099 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7381 7398 32.031395 163.274261 97.652828 1.989684825 0.070428 165 32 SH6491 6491 snR46 5' 28.269309 156.736888 92.5030985 1.96615628 -0.146371 165 33 SH75 75 Ala2 11-23 11 23 37.847551 168.679863 103.263707 2.013947711 0.277975 165 34 SH9711 9711 RUF4 RUF4 331 347 26.420348 116.642456 71.531402 1.854496737 -0.04742 165 35 SH5411 5411 snR31 snR31 121 137 32.171263 184.66578 108.4185215 2.035103481 -0.069471 165 36 SH3504 3504 Tyr1 tRNA 61 73 37.943327 181.831194 109.8872605 2.040947347 0.132258 165 37 SH2194 2194 Met2 3' flank 31.273007 165.567772 98.4203895 1.993085079 0.011463 165 38 SH20228 20228 YDR129C spliced 32.267273 166.04099 99.1541315 1.996310815 0.067071 165 39 SH19545 19545 CBP1 2.2 34.225242 180.49996 107.362601 2.030853024 0.043172 165 40 SH2086 2086 Lys4 96 + 3' flank 96 117 25.620117 118.78182 72.2009685 1.858543023 -0.125658 165 41 SH6680 6680 snR49 5' 26.596799 118.873112 72.7349555 1.861743177 -0.049593 165 42 SH15243 15243 MT tRNA fMet 5' / tRNA 32.368038 198.519241 32.368038 167.151203 99.7596205 1.998954788 0.066129 165 43 SH3683 3683 Val2 3' flank 28.520943 151.670781 90.095862 1.954704845 -0.101526 165 44 SH17459 17459 YIL148W_9_68708_69528_INTRON_9_442 intron 86.502267 329.996913 86.502267 244.494646 165.4984565 2.218793948 0.122036 165 45 SH8233 8233 snoRNA cluster 3; 3' 32.353952 242.601296 32.353952 211.247344 121.800648 2.085649599 -0.307064 165 46 SH16317 16317 YDR471W_4_1401759_1402553_INTRON_32_415 intron 116.175677 414.887484 116.175677 299.711807 207.943742 2.317945855 0.016324 165 47 SH11079 11079 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2281 2296 28.550942 154.269538 91.41024 1.960994849 -0.112944 165 48 SH18600 18600 YNL069C_14_494998_493953_INTRON_29_477 intron 27.639717 171.563072 27.639717 144.923355 86.281536 1.935917868 -0.132162 165 49 SH12601 12601 MT_15S MT_15S 30.608375 203.710445 30.608375 174.10207 102.3552225 2.010110007 -0.07976 165 50 SH9490 9490 RUF2 3' 36.529123 168.593879 102.561501 2.010984368 0.236361 165 51 SH18581 18581 YNL044W_14_545264_545873_INTRON_25_103 3' exon 30.821295 180.496315 30.821295 150.67502 90.7481575 1.957837816 0.064948 165 52 SH960 960 Gly1 tRNA 51 63 44.646582 172.727165 108.6868735 2.036177096 0.357339 165 53 SH3201 3201 Ser5 3' flank 29.103436 175.396079 102.2497575 2.009662287 -0.181533 165 54 SH16134 16134 YDR064W_4_579453_580447_INTRON_22_560 3' exon 64.778148 274.944178 64.778148 211.16603 137.972089 2.13979124 0.168265 165 55 SH12815 12815 MT COX1 COX1ai1 29.290807 174.04371 29.290807 145.752903 87.521855 1.942116514 -0.014415 165 56 SH17510 17510 YJL136C_10_156971_156248_INTRON_25_484 intron 33.301847 190.734337 33.301847 158.43249 95.8671685 1.9816699 0.173725 165 57 SH14139 14139 MT COB intronic 29.367073 183.559553 29.367073 155.19248 92.2797765 1.965106534 -0.059285 165 58 SH16129 16129 YDR064W_4_579453_580447_INTRON_22_560 intron 31.328634 176.570183 31.328634 146.241549 88.7850915 1.948340047 0.123025 165 59 SH11188 11188 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2826 2844 34.23866 128.555211 81.3969355 1.910608055 0.41178 165 60 SH5284 5284 snR30 snR30 271 288 29.224892 147.242177 88.2335345 1.945633677 -0.027082 165 61 SH18287 18287 YML067C_13_140214_139063_INTRON_32_124 intron 31.095234 212.138594 31.095234 182.04336 106.569297 2.027632101 -0.095577 165 62 SH7155 7155 snR63 3' 29.038265 156.705244 92.8717545 1.96788365 -0.090511 165 63 SH14316 14316 MT VAR1 includes 5’ processing site VAR1 28.95496 171.802752 28.95496 143.847792 86.401376 1.936520659 -0.028449 165 64 SH958 958 Gly1 tRNA 41 53 55.255496 224.018042 139.636769 2.144999791 -0.080049 165 65 SH21755 21755 copy of SH13180 38.600124 195.451128 117.025626 2.068280973 -0.012913 165 66 SH10490 10490 RUF8 RUF8 376 393 30.818303 183.378328 107.0983155 2.02978264 -0.119723 165 67 SH8064 8064 snoRNA cluster 2 snR61 34.760148 193.038068 34.760148 159.27792 97.019034 1.986856946 0.248437 165 68 SH6074 6074 snR37 snR37 286 302 27.02907 156.577213 91.8031415 1.962857543 -0.239488 165 69 SH21767 21767 copy of SH13602 27.105826 114.157852 70.631839 1.849000514 0.023077 165 70 SH10107 10107 RUF6 RUF6 381 398 29.15014 158.86391 94.007025 1.973160309 -0.093614 165 71 SH12649 12649 MT_15S MT_15S 37.121064 223.633889 37.121064 187.512825 112.3169445 2.05044528 0.049747 165 72 SH11959 11959 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6681 6694 41.183506 180.133479 110.6584925 2.04398475 0.210663 165 73 SH6678 6678 snR49 5' 31.373171 158.421154 94.8971625 1.977253227 0.061168 165 74 SH14515 14515 MT 21S rRNA 21S rRNA3 29.469475 191.088187 29.469475 162.618712 96.0440935 1.982470662 -0.089927 165 75 SH13016 13016 MT COX1 COX1ai2 27.5595 142.214378 27.5595 115.654878 71.607189 1.854956625 0.046228 165 76 SH16361 16361 YEL012W_5_131772_132551_INTRON_6_128 intron 29.630785 192.393683 29.630785 163.762898 96.6968415 1.985412289 -0.084278 165 77 SH6783 6783 snR50 3' 27.70871 169.666534 98.687622 1.994262684 -0.252152 165 78 SH5582 5582 snR33 3' 29.772745 141.336322 85.5545335 1.932243028 0.043936 165 79 SH9586 9586 RUF3 RUF3 316 337 31.817048 166.95372 99.385384 1.99732252 0.035235 165 80 SH17549 17549 YJL177W_10_90783_91654_INTRON_310_626 3' exon 31.813287 199.954016 31.813287 169.140729 100.477008 2.002066694 0.021791 165 81 SH1654 1654 Leu5 3' flank 29.757108 142.242522 85.999815 1.934497517 0.037848 165 82 SH3399 3399 Thr4 3' flank 27.671146 103.158808 65.414977 1.815677193 0.150042 165 83 SH18756 18756 YNL162W_14_331319_332151_INTRON_5_516 intron 29.552826 169.767553 29.552826 141.214727 85.3837765 1.93137536 0.028992 165 84 SH4456 4456 telomerase RNA 3' 29.424568 146.4414 87.932984 1.944151811 -0.008491 165 85 SH19264 19264 YPL143W_16_282121_282969_INTRON_20_544 intron 31.27508 201.887926 31.27508 171.612846 101.443963 2.006226207 -0.024848 165 86 SH9626 9626 RUF4 5' 78.647427 195.83243 137.2399285 2.137480483 0.483099 165 87 SH11780 11780 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5786 5803 2966.15374 1165.802111 2065.977926 3.315125677 1.692445 165 88 SH5216 5216 snR30 5' 29.033803 149.853989 89.443896 1.951550708 -0.054615 165 89 SH15959 15959 YDL130W_4_229906_230527_INTRON_115_415 intron 30.924418 172.062269 30.924418 142.137851 86.5311345 1.937172398 0.119131 165 90 SH4975 4975 snR10 5' 30.857946 179.116083 104.9870145 2.021135586 -0.093426 165 91 SH15256 15256 MT 9S rRNA 5' 28.838553 193.555348 28.838553 165.716795 97.277674 1.988013178 -0.150128 165 92 SH18399 18399 YMR125W_13_517538_520445_INTRON_26_347 intron 26.816883 138.16381 26.816883 112.346927 69.581905 1.842496315 0.014458 165 93 SH13209 13209 MT COX1 COX1-ai4 28.652676 197.646498 28.652676 169.993822 99.323249 1.997050917 -0.18419 165 94 SH12822 12822 MT COX1 COX1ai1 28.543305 212.306597 28.543305 184.763292 106.6532985 2.027974292 -0.270724 165 95 SH4778 4778 snR5 snR5 61 78 34.184687 210.014052 122.0993695 2.086713421 -0.25537 165 96 SH20592 20592 YHR039C-A spliced 32.151879 193.061868 112.6068735 2.051564901 -0.145223 165 97 SH5629 5629 snR34 snR34 66 80 32.058494 167.104432 99.581463 1.998178502 0.04845 165 98 SH21097 21097 YNL044W spliced 31.9935 147.906868 89.950184 1.954002056 0.157434 165 99 SH5591 5591 snR33 3' 28.158871 129.163603 78.661237 1.895760772 -0.001285 165 100 SH507 507 Asp2 3' flank 47.214391 162.553627 104.884009 2.020709279 0.529626 165 101 SH19355 19355 YPL249C-A_16_76239_75699_INTRON_17_254 intron 28.165791 169.405848 28.165791 142.240057 85.202924 1.930454499 -0.077888 165 102 SH5502 5502 snR32 snR32 171 188 32.007758 157.816284 94.912021 1.977321221 0.103592 165 103 SH4554 4554 U3b (snR17b) U3b 326 342 31.091282 155.863986 93.477634 1.970707711 0.05562 165 104 SH21441 21441 TH213 - control oligo; WTP_223 30.167517 156.422093 93.294805 1.969857461 -0.00987 166 2 SH20763 20763 YJR145C spliced 77.600262 249.349581 163.4749215 2.213451137 -0.015803 166 3 SH15656 15656 YBR189W_2_604466_605466_INTRON_8_420 intron 31.199457 208.225491 31.199457 178.026034 104.6127455 2.0195846 -0.066649 166 4 SH21044 21044 YMR142C spliced 40.902036 207.830766 124.366401 2.094703067 -0.118028 166 5 SH21826 21826 copy of SH16121 30.87237 171.268734 101.070552 2.004624638 -0.047035 166 6 SH12344 12344 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 46.230397 219.343985 46.230397 174.113588 110.1719925 2.042071204 0.35999 166 7 SH20512 20512 YGR029W spliced 30.452826 174.002761 102.2277935 2.009568987 -0.088705 166 8 SH8044 8044 snoRNA cluster 2 intergenic 28.302434 185.415649 28.302434 158.113215 93.2078245 1.969452372 -0.151023 166 9 SH18791 18791 YNL301C_14_64561_63569_INTRON_113_544 intron 31.842559 224.106717 31.842559 193.264158 112.5533585 2.051358459 -0.15857 166 10 SH15753 15753 YCR031C_3_178212_177492_INTRON_8_314 intron 56.014467 289.552609 56.014467 234.538142 145.2763045 2.162194784 -0.167288 166 11 SH12821 12821 MT COX1 COX1ai1 38.693057 236.203748 38.693057 198.510691 118.601874 2.074091551 -0.046498 166 12 SH21164 21164 YNL302C spliced 36.483322 160.536125 98.5097235 1.9934791 0.317499 166 13 SH15930 15930 YDL108W_4_267697_268698_INTRON_29_109 3' exon 37.978577 199.723563 37.978577 162.744986 100.3617815 2.001568362 0.342557 166 14 SH10429 10429 RUF8 RUF8 71 88 32.231628 149.343483 90.7875555 1.958026323 0.164993 166 15 SH8393 8393 snoRNA cluster 5 snR190 33.804018 208.958693 33.804018 176.154675 104.9793465 2.021103865 0.069457 166 16 SH2991 2991 Ser2 5' flank 30.94802 168.704034 99.826027 1.999243787 -0.027131 166 17 SH17700 17700 YKL081W_11_282533_284097_INTRON_206_531 5' exon 217.950369 593.570232 217.950369 376.619863 297.285116 2.473173166 0.273732 166 18 SH20953 20953 YML024W spliced 61.237951 242.285622 151.7617865 2.18116243 -0.162131 166 19 SH19586 19586 AEP2/ATP13 2.1 33.590207 188.338312 110.9642595 2.045183119 -0.050997 166 20 SH18144 18144 YLR406C_12_931752_931062_INTRON_58_406 intron 26.572054 199.745738 26.572054 174.173684 100.372869 2.001616338 -0.360318 166 21 SH9531 9531 RUF3 RUF3 41 58 37.563238 210.18245 123.872844 2.092976109 -0.194846 166 22 SH8597 8597 snR19 / U1 RNA U1 481 497 32.38134 156.226657 94.3039985 1.974530107 0.13557 166 23 SH17719 17719 YKL081W_11_282533_284097_INTRON_206_531 3' exon 32.629809 206.985112 32.629809 175.355303 103.992556 2.017002253 0.032505 166 24 SH17329 17329 YIL004C_9_348502_347943_INTRON_12_142 3' exon 32.871553 205.036283 32.871553 173.16473 103.0181415 2.012913711 0.059075 166 25 SH18374 18374 YMR079W_13_424988_426058_INTRON_10_165 3' exon 33.092976 192.546638 33.092976 160.453662 96.773319 1.985755636 0.149084 166 26 SH16898 16898 YGL226C-A_7_73156_72747_INTRON_22_170 intron 72.697299 258.995849 72.697299 187.29855 129.9979245 2.113936419 0.510587 166 27 SH21139 21139 YNL162W spliced 29.70246 179.482534 104.592497 2.019500531 -0.166847 166 28 SH3029 3029 Ser2 3' flank 31.715093 165.576593 98.645843 1.994078789 0.03765 166 29 SH19021 19021 YOR182C_15_678792_678190_INTRON_4_414 intron 29.942927 204.458162 29.942927 175.515235 102.729081 2.011693403 -0.129064 166 30 SH8697 8697 LSR1 / U2 RNA U2 126 143 123.121103 309.235895 216.178499 2.334812497 0.016794 166 31 SH15752 15752 YCR031C_3_178212_177492_INTRON_8_314 intron 56.861327 270.942428 56.861327 215.081101 135.971214 2.133446975 0.028265 166 32 SH3318 3318 Thr3 5' flank 28.300476 146.197443 87.2489595 1.940760256 -0.089227 166 33 SH878 878 Glu3 5' flank 34.100911 184.635923 109.368417 2.038891926 0.000582 166 34 SH21283 21283 YPL143W spliced 34.167856 197.195263 115.6815595 2.063264135 -0.118554 166 35 SH13966 13966 MT COB Cytbi3 26.553041 170.884387 26.553041 145.331346 85.9421935 1.934206434 -0.218826 166 36 SH11533 11533 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4551 4568 93.306043 246.625798 169.9659205 2.230361851 0.175267 166 37 SH15413 15413 YBL059C-A_2_110500_110086_INTRON_35_119 3' exon 28.560133 208.226859 28.560133 180.666726 104.6134295 2.01958744 -0.246842 166 38 SH1859 1859 Leu9 tRNA-exon/intron 36 52 32.454289 153.556762 93.0055255 1.968508751 0.156742 166 39 SH21180 21180 YNR053C spliced 36.353387 179.985288 108.1693375 2.03410417 0.120254 166 40 SH17074 17074 YGR225W_7_945138_946919_INTRON_1184_1276 intron 34.443647 203.573405 34.443647 170.129758 102.2867025 2.009819178 0.150637 166 41 SH13473 13473 MT COX1 intronic 30.582958 192.727566 30.582958 163.144608 96.863783 1.986161426 -0.015574 166 42 SH1970 1970 Lys2 tRNA 51 63 43.136307 192.242407 117.689357 2.07073719 0.092065 166 43 SH7534 7534 snR79 snR79 11 28 30.542342 142.263729 86.4030355 1.936529 0.092587 166 44 SH13453 13453 MT COX1 intronic 28.586696 199.894683 28.586696 172.307987 100.4473415 2.001938447 -0.199928 166 45 SH19195 19195 YPL081W_16_404945_406039_INTRON_8_508 intron 26.642903 158.575896 26.642903 132.932993 79.787948 1.901937296 -0.138938 166 46 SH20436 20436 YGL076C spliced 78.871136 249.67811 164.274623 2.215570479 -0.004041 166 47 SH16239 16239 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 30.508651 178.041409 30.508651 148.532758 89.5207045 1.951923491 0.05539 166 48 SH16646 16646 YFR031C-A_6_221405_220494_INTRON_5_151 exon/intron 32.489915 203.23363 32.489915 171.743715 102.116815 2.009097261 0.045617 166 49 SH931 931 Gly1 5' flank 28.705363 154.189899 91.447631 1.961172459 -0.101332 166 50 SH1473 1473 Leu2 3' flank 30.741576 172.623502 101.682539 2.007246382 -0.062977 166 51 SH6551 6551 snR46 3' 28.912017 145.593484 87.2527505 1.940779126 -0.040975 166 52 SH525 525 Cys1 5' flank 183.147098 285.526654 234.336876 2.369840636 0.576888 166 53 SH13985 13985 MT COB intronic 37.002563 231.387298 37.002563 195.384735 116.193649 2.065182391 -0.042078 166 54 SH10476 10476 RUF8 RUF8 306 327 27.272118 124.168373 75.7202455 1.879212013 -0.034405 166 55 SH4427 4427 telomerase RNA telomerase 1171 1192 29.315599 129.430677 79.373138 1.89967355 0.079923 166 56 SH4336 4336 telomerase RNA telomerase 716 735 29.358492 155.786636 92.572564 1.966482293 -0.062987 166 57 SH7318 7318 snR66 81-86 + 3' 81 29.3652 153.706701 91.5359505 1.961591696 -0.051625 166 58 SH4539 4539 U3b (snR17b) U3b 251 270 29.335974 178.505631 103.9208025 2.016702492 -0.184511 166 59 SH20563 20563 YHR001W-A spliced 59.957361 193.00175 126.4795555 2.102020331 0.298838 166 60 SH9758 9758 RUF4 RUF4 566 582 31.159644 191.137561 111.1486025 2.045904007 -0.165871 166 61 SH17896 17896 YLR048W_12_242233_243350_INTRON_91_449 3' exon 33.021073 241.38913 33.021073 209.368057 121.194565 2.083483144 -0.273162 166 62 SH12857 12857 MT COX1 COX1ai1 32.916265 205.900269 32.916265 173.984004 103.4501345 2.01473106 0.056821 166 63 SH5933 5933 snR36 snR36 121 136 32.826332 142.069822 87.448077 1.941750264 0.243383 166 64 SH11817 11817 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5971 5988 28.871812 143.307426 86.089619 1.934950786 -0.031573 166 65 SH4937 4937 snR9 snR9 91 108 46.369754 194.528994 120.449374 2.080804547 0.109678 166 66 SH6995 6995 snR60 snR60 56 76 34.68345 188.972308 111.827879 2.048550088 -0.0183 166 67 SH1998 1998 Lys3 5' flank 29.857715 187.31988 108.5887975 2.035785024 -0.200525 166 68 SH477 477 Asp2 5' flank 28.944059 169.502601 99.22333 1.996613798 -0.160848 166 69 SH21206 21206 YOL127W spliced 32.929732 172.291315 102.6105235 2.011191903 0.067519 166 70 SH18968 18968 YOR096W_15_505793_506766_INTRON_145_545 exon/intron 31.061845 204.622174 31.061845 174.560329 102.811087 2.012039951 -0.054939 166 71 SH5945 5945 snR36 snR36 181 202 35.087929 209.746845 122.417387 2.087843105 -0.234147 166 72 SH14854 14854 MT tRNA Ser2; tRNA Arg2 5' / tRNA Ser 29.270397 186.882272 29.270397 158.611875 93.941136 1.972855808 -0.083784 166 73 SH18913 18913 YOL120C_15_94401_93394_INTRON_113_559 intron 31.333936 175.361629 31.333936 145.027693 88.1808145 1.945374106 0.130128 166 74 SH4744 4744 snR4 3' 31.43053 168.625001 100.0277655 2.000120567 0.002266 166 75 SH10953 10953 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1651 1667 34824.00296 24159.9416 29491.97228 4.469703817 0.090103 166 76 SH14332 14332 MT VAR1 includes 5’ processing site VAR1 33.640367 216.185716 33.640367 183.545349 108.592858 2.035801263 -0.00571 166 77 SH18683 18683 YNL112W_14_413636_416278_INTRON_1274_2275 intron 33.75075 214.14789 33.75075 181.39714 107.573945 2.031707096 0.018081 166 78 SH19424 19424 YPR132W_16_794960_795762_INTRON_66_430 intron 31.831166 193.029252 31.831166 162.198086 97.014626 1.986837214 0.065425 166 79 SH16207 16207 YDR381W_4_1236547_1237993_INTRON_286_1051 exon/intron 29.869731 189.182582 29.869731 160.312851 95.091291 1.978140744 -0.050361 166 80 SH11719 11719 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5481 5496 334.972814 518.365165 426.6689895 2.630091079 0.232903 166 81 SH7715 7715 snoRNA cluster1 snR77 41.902409 219.393705 41.902409 178.491296 110.1968525 2.04216919 0.242852 166 82 SH8506 8506 snR19 / U1 RNA U1 26 48 29.729046 161.672265 95.7006555 1.980914912 -0.066999 166 83 SH6014 6014 snR37 5' - 5 -14 5 27.604437 129.119473 78.361955 1.894105262 -0.0419 166 84 SH13204 13204 MT COX1 exon4/cox1-ai4 33.417994 213.603278 33.417994 181.185284 107.301639 2.030606356 0.008183 166 85 SH19815 19815 Negative Control 68.968627 207.695555 138.332091 2.140922942 0.253678 166 86 SH15627 15627 YBR181C_2_592732_591670_INTRON_7_358 intron 402.98752 1009.202781 402.98752 607.215261 505.1013905 2.703378564 0.194458 166 87 SH3726 3726 Val3 3' flank 31.000187 161.776205 96.388196 1.984023852 0.018621 166 88 SH13769 13769 MT COB intronic 30.89656 208.912575 30.89656 179.016015 104.9562875 2.02100846 -0.090521 166 89 SH12759 12759 MT COX1 COX1ai1 44.452644 244.995178 44.452644 201.542534 122.997589 2.089896598 0.003156 166 90 SH14872 14872 MT tRNA Ser2; tRNA Arg2 3' 34.610962 216.584187 34.610962 182.973225 108.7920935 2.036597334 0.033632 166 91 SH6975 6975 snR60 5' 36.458661 150.048495 93.253578 1.969665504 0.398268 166 92 SH20589 20589 YHR021C spliced 32.494739 154.315461 93.4051 1.97037059 0.154611 166 93 SH17058 17058 YGR214W_7_920570_921783_INTRON_91_545 intron 38.183822 228.504523 38.183822 191.320701 114.7522615 2.059761253 0.025934 166 94 SH16019 16019 YDL189W_4_122079_123590_INTRON_1_99 exon/intron 38.076514 240.021216 38.076514 202.944702 120.510608 2.081025278 -0.10662 166 95 SH10969 10969 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1731 1748 2240.746246 1896.167716 2068.456981 3.315646493 0.560912 166 96 SH6305 6305 snR42 snR42 306 320 32.162974 168.619653 100.3913135 2.001696136 0.045362 166 97 SH146 146 Arg1 3' flank 30.212884 191.917847 111.0653655 2.04557865 -0.209708 166 98 SH2247 2247 Phe1 3' flank 28.292219 141.621098 84.9566585 1.929197422 -0.065057 166 99 SH20916 20916 YLR344W spliced 31.167645 176.385411 103.776528 2.016099137 -0.05915 166 100 SH12280 12280 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 58.112539 265.0463 58.112539 207.933761 133.02315 2.123927228 0.11665 166 101 SH17521 17521 YJL136C_10_156971_156248_INTRON_25_484 intron 30.288023 195.00815 30.288023 165.720127 98.004075 1.991244134 -0.049298 166 102 SH8507 8507 snR19 / U1 RNA U1 31 52 32.260356 158.602623 95.4314895 1.979691702 0.113237 166 103 SH11424 11424 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4006 4021 2275.461956 1956.489362 2115.975659 3.325510668 0.532275 166 104 SH237 237 Arg3 41-53 41 53 49.885498 190.742991 120.3142445 2.080317048 0.200341 167 2 SH7079 7079 snR63 5' 33.370474 167.576978 100.473726 2.002052508 0.120561 167 3 SH562 562 Cys1 3' flank 29.241073 163.880569 96.560821 1.98480095 -0.112336 167 4 SH11517 11517 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4471 4488 58.719595 190.449315 124.584455 2.095463857 0.313241 167 5 SH15181 15181 MT COX3 cox3 28.898655 167.225937 28.898655 139.327282 84.1129685 1.92486296 -0.007665 167 6 SH5204 5204 snR13 3' 30.632118 164.597496 97.614807 1.9895157 -0.021274 167 7 SH8108 8108 snoRNA cluster 3; 5' 45.801559 260.400239 45.801559 215.59868 130.7001195 2.116275985 -0.129532 167 8 SH21657 21657 copy of SH8992 30.1428 158.59727 94.370035 1.974834116 -0.022759 167 9 SH10246 10246 RUF6 3' 29.879497 183.331088 106.6052925 2.027778766 -0.177293 167 10 SH8056 8056 snoRNA cluster 2 intergenic 29.610337 199.226687 29.610337 170.61635 100.1133435 2.000491966 -0.121183 167 11 SH19064 19064 YOR293W_15_867094_867848_INTRON_53_489 exon/intron 29.340918 179.4587 29.340918 151.117782 90.22935 1.955347829 -0.039581 167 12 SH4952 4952 snR9 snR9 166 182 34.591822 164.140767 99.3662945 1.997239095 0.208808 167 13 SH12121 12121 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7491 7513 30.648076 179.448735 105.0484055 2.021389465 -0.108069 167 14 SH13761 13761 MT COB intronic 30.404873 215.241058 30.404873 185.836185 108.120529 2.033908162 -0.158498 167 15 SH7279 7279 snR65 3' 28.401871 152.796785 90.599328 1.957124976 -0.116101 167 16 SH18970 18970 YOR096W_15_505793_506766_INTRON_145_545 intron 78.508157 349.613976 78.508157 272.105819 175.306988 2.243799228 -0.177402 167 17 SH7474 7474 snR71 5' - 5 -14 5 31.711617 130.876443 81.29403 1.910058653 0.236728 167 18 SH8762 8762 LSR1 / U2 RNA U2 451 467 70.081608 240.002202 155.041905 2.190449096 -0.028593 167 19 SH6012 6012 snR37 5' 33.500512 149.967971 91.7342415 1.962531474 0.240629 167 20 SH21014 21014 YMR033W spliced 38.991848 180.246716 109.619282 2.039886953 0.170605 167 21 SH7853 7853 snoRNA cluster1 intergenic 33.811908 215.363771 33.811908 182.551863 108.1818855 2.034154546 0.009542 167 22 SH14611 14611 MT 21S rRNA Sce1 endonuc 27.715279 176.735073 27.715279 150.019794 88.8675365 1.948743141 -0.153346 167 23 SH9194 9194 snR7 U5 RNA 3' 25.194318 152.183464 88.688891 1.947869224 -0.365353 167 24 SH6648 6648 snR48 snR48 66 83 30.882804 147.587396 89.2351 1.950535715 0.085858 167 25 SH3317 3317 Thr3 5' flank 29.250679 143.830719 86.540699 1.937220399 -0.006956 167 26 SH4164 4164 SRP RNA 3' 42.468955 196.504171 119.486563 2.077319069 0.0326 167 27 SH16605 16605 YFL034C-B_6_63992_63015_INTRON_21_134 exon/intron 31.465482 192.88513 31.465482 162.419648 96.942565 1.986514507 0.042438 167 28 SH6841 6841 snR52 3' 31.618411 180.316666 105.9675385 2.025172846 -0.054703 167 29 SH13917 13917 MT COB Cytbi3 29.869059 199.686195 29.869059 170.817136 100.3430975 2.001487503 -0.106115 167 30 SH441 441 Asp1 tRNA 26 38 89.075072 229.896586 159.485829 2.2027221 0.269789 167 31 SH11766 11766 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5716 5731 3045.838244 1139.82672 2092.832482 3.320734467 1.762697 167 32 SH11921 11921 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6491 6507 32.103648 125.614185 78.8589165 1.896850806 0.294586 167 33 SH1330 1330 Ile3 tRNA-exon/intron 31 47 32.202058 179.124056 105.663057 2.023923171 -0.01691 167 34 SH4503 4503 U3b (snR17b) U3b 71 85 28.456503 173.236947 100.846725 2.003661799 -0.213757 167 35 SH9283 9283 RUF1 5' - 9 -9 9 34.301004 180.55691 107.428957 2.031121359 0.045288 167 36 SH2901 2901 Pro8 tRNA 26 38 30.525151 137.721782 84.1234665 1.92491716 0.116688 167 37 SH13957 13957 MT COB Cytbi3 28.659578 194.189955 28.659578 166.530377 97.5949775 1.989427468 -0.167015 167 38 SH18760 18760 YNL162W_14_331319_332151_INTRON_5_516 intron 28.711262 182.181663 28.711262 154.470401 91.5908315 1.961852002 -0.102377 167 39 SH21412 21412 Ser3 spliced 30.685574 153.718523 92.2020485 1.96474057 0.039589 167 40 SH12117 12117 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7471 7488 30.705317 181.734431 106.219874 2.026205782 -0.11744 167 41 SH7781 7781 snoRNA cluster1 intergenic 28.764162 161.85584 28.764162 134.091678 81.42792 1.910773341 0.012359 167 42 SH15206 15206 MT COX3 cox3 34.552411 201.447557 34.552411 167.895146 101.2237785 2.005282545 0.176725 167 43 SH20508 20508 YGR027C spliced 30.63557 162.151319 96.3934445 1.9840475 -0.007059 167 44 SH4059 4059 SRP RNA SRP RNA 186 205 28.659011 160.164341 94.411676 1.975025707 -0.135481 167 45 SH17304 17304 YHR203C_8_505526_504472_INTRON_15_283 intron 32.480863 223.160517 32.480863 191.679654 112.0802585 2.049529124 -0.120903 167 46 SH8126 8126 snoRNA cluster 3; snR41 30.533401 192.927234 30.533401 163.393833 96.963617 1.986608807 -0.020176 167 47 SH11746 11746 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5616 5634 2421.911067 1456.415787 1939.163427 3.287614412 1.076444 167 48 SH2759 2759 Pro5 3' flank 28.657371 139.03686 83.8471155 1.923488127 -0.023697 167 49 SH18822 18822 YNL302C_14_62942_61957_INTRON_21_571 intron 31.631253 181.285801 31.631253 150.654548 91.1429005 1.959722845 0.118891 167 50 SH4419 4419 telomerase RNA telomerase 1131 1147 30.764656 155.848468 93.306562 1.969912188 0.033783 167 51 SH9718 9718 RUF4 RUF4 366 380 32.833704 189.35987 111.096787 2.045701499 -0.087413 167 52 SH3166 3166 Ser5 5' flank 27.094948 127.35613 77.225539 1.887760948 -0.068817 167 53 SH2019 2019 Lys3 tRNA-intron 41 57 29.161099 198.295741 113.72842 2.055869006 -0.307321 167 54 SH11023 11023 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2001 2014 257.785272 418.65033 338.217801 2.529196462 0.282133 167 55 SH1053 1053 Gly3 tRNA 1 15 148.74618 322.590337 235.6682585 2.372301093 0.13422 167 56 SH7513 7513 snR79 5' 31.32508 188.347843 109.8364615 2.040746533 -0.134717 167 57 SH9557 9557 RUF3 RUF3 171 187 780.520318 1007.211719 893.8660185 2.951272427 0.195179 167 58 SH20695 20695 YIL148W spliced 31.272062 158.967592 95.119827 1.978271052 0.05168 167 59 SH14350 14350 MT ORF9 and ORF10 (hypothetical) 5' 27.261209 138.203061 27.261209 111.941852 69.6015305 1.84261879 0.051167 167 60 SH3139 3139 Ser4 101 + 3' flank 101 27.180311 133.349933 80.265122 1.90452687 -0.100462 167 61 SH9109 9109 snR14 / U4 RNA 3' 30.027525 165.751147 97.889336 1.990735383 -0.066451 167 62 SH1370 1370 Leu1 5' flank 32.864749 175.500163 104.182456 2.017794591 0.041982 167 63 SH2174 2174 Met2 tRNA 1 13 30.835617 151.608792 91.2222045 1.960100563 0.060907 167 64 SH2473 2473 Phe5 3' flank 32.726102 171.168258 101.94718 2.008375217 0.062567 167 65 SH17415 17415 YIL106W_9_166412_167441_INTRON_21_105 3' exon 34.643305 203.394424 34.643305 169.751119 102.197212 2.009439048 0.161321 167 66 SH10736 10736 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 566 583 32.705559 151.461945 92.083752 1.964183007 0.183875 167 67 SH10704 10704 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 406 424 28.852249 137.665858 83.2590535 1.920431469 -0.001701 167 68 SH16039 16039 YDL191W_4_117665_118518_INTRON_4_494 intron 1622.927979 3929.71712 1622.927979 2307.789141 1965.35856 3.293441795 -0.172564 167 69 SH2335 2335 Phe3 tRNA 1 15 307.530029 463.543927 385.536978 2.586066039 0.317818 167 70 SH4640 4640 snR3 snR3 116 134 29.045525 167.212654 98.1290895 1.991797769 -0.142567 167 71 SH17427 17427 YIL133C_9_99416_98527_INTRON_32_321 5' exon 33.051751 200.301991 33.051751 168.25024 100.6509955 2.002818075 0.098547 167 72 SH7115 7115 snR63 snR63 81 102 27.245339 123.71645 75.4808945 1.877837038 -0.033404 167 73 SH3360 3360 Thr3 3' flank 33.253648 167.594469 100.4240585 2.001837769 0.113899 167 74 SH12065 12065 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7211 7231 29.405617 155.341379 92.373498 1.96554739 -0.05734 167 75 SH16132 16132 YDR064W_4_579453_580447_INTRON_22_560 intron 32.50068 211.860953 32.50068 180.360273 106.4304765 2.027066007 -0.017458 167 76 SH2968 2968 Ser1 tRNA 71 83 61.705921 194.46153 128.0837255 2.107493951 0.304627 167 77 SH1579 1579 Leu4 tRNA-intron/exon 66 82 39.785387 183.482872 111.6341295 2.04779699 0.146104 167 78 SH20503 20503 YGR001C spliced 33.871444 152.153889 93.0126665 1.968542095 0.246512 167 79 SH1835 1835 Leu9 5' flank 29.910613 172.718915 101.314764 2.005672737 -0.114765 167 80 SH1242 1242 Ile2 5' flank 31.941323 195.035298 113.4883105 2.054951131 -0.170255 167 81 SH821 821 Glu1 3' flank 29.882715 148.290149 89.086432 1.949811565 0.013693 167 82 SH7116 7116 snR63 snR63 86 108 27.780853 142.699381 85.240117 1.930644037 -0.109383 167 83 SH487 487 Asp2 5' flank - tRNA13 5' flank 13 114.785948 205.966273 160.3761105 2.205139677 0.72082 167 84 SH9898 9898 RUF5-1 RUF5-1 296 310 31.471956 160.134441 95.8031985 1.981380009 0.057219 167 85 SH11694 11694 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5356 5371 1822.992015 701.398432 1262.195224 3.101126532 1.861197 167 86 SH2934 2934 Ser1 5' flank 31.119122 192.59256 111.855841 2.048658667 -0.180226 167 87 SH10518 10518 RUF8 RUF8 516 534 29.012149 153.985479 91.498814 1.961415465 -0.078195 167 88 SH563 563 Cys1 3' flank 30.83692 161.381087 96.1090035 1.982764074 0.010393 167 89 SH7437 7437 snR69 snR69 86 100 34.608834 172.031777 103.3203055 2.014185682 0.137608 167 90 SH5663 5663 snR34 snR34 236 251 30.629903 155.486906 93.0584045 1.968755602 0.026555 167 91 SH96 96 Ala2 3' flank 28.614824 178.628371 103.6215975 2.015450283 -0.231738 167 92 SH6081 6081 snR37 snR37 321 337 43.952006 193.447728 118.699867 2.074450232 0.089024 167 93 SH1602 1602 Leu4 3' flank 26.554307 107.075406 66.8148565 1.82487304 0.034479 167 94 SH17392 17392 YIL069C_9_232366_231550_INTRON_4_412 intron 30.329684 173.932576 30.329684 144.602892 87.466288 1.941840696 0.064902 167 95 SH12745 12745 MT COX1 COX1ai1 84.187638 329.281832 84.187638 246.094194 165.140916 2.217854689 0.084134 167 96 SH4704 4704 snR4 snR4 56 74 28.361637 168.414261 98.387949 1.992941907 -0.197815 167 97 SH1939 1939 Lys1 3' flank 30.286297 149.728308 90.0073025 1.954277746 0.033715 167 98 SH12269 12269 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.368532 179.505502 29.368532 151.13697 90.252751 1.955460449 -0.037731 167 99 SH9943 9943 RUF5-1 RUF5-1 521 535 28.46849 147.149484 87.808987 1.943538967 -0.081819 167 100 SH11622 11622 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4996 5014 28.538638 140.7029 84.620769 1.927476968 -0.041724 167 101 SH21398 21398 Pro2_7 spliced 124.24096 299.756446 211.998703 2.326333204 0.084206 167 102 SH3266 3266 Thr2 5' flank 30.61885 177.805962 104.212406 2.017919423 -0.100508 167 103 SH6057 6057 snR37 snR37 201 217 32.629176 163.556738 98.092957 1.991637826 0.103237 167 104 SH18194 18194 YML024W_13_225889_226697_INTRON_4_401 intron 47.42953 252.022225 47.42953 205.592695 126.5111125 2.102128675 -0.000417 168 2 SH20901 20901 YLR306W spliced 31.468822 197.403927 114.4363745 2.05856409 -0.208478 168 3 SH15027 15027 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.32226 183.737487 27.32226 157.415227 92.3687435 1.965525036 -0.220925 168 4 SH3874 3874 RNaseP RNaseP 336 348 31.088933 180.872036 105.9804845 2.025225901 -0.089397 168 5 SH476 476 Asp2 5' flank 30.866228 147.861769 89.3639985 1.951162593 0.08324 168 6 SH21390 21390 Phe1_5 spliced 860.324132 1097.567569 978.9458505 2.99075867 0.180575 168 7 SH19431 19431 YPR132W_16_794960_795762_INTRON_66_430 intron 32.290543 204.622502 32.290543 173.331959 102.811251 2.012040644 0.024757 168 8 SH19917 19917 YAL003W spliced 31.057891 165.067744 98.0628175 1.991504367 0.001633 168 9 SH8996 8996 snR17a / U3a U3a 266 282 118.573604 335.917518 227.245561 2.356495408 -0.176116 168 10 SH1452 1452 Leu2 tRNA-exon/intron 31 50 29.575716 177.962097 103.7689065 2.01606724 -0.166197 168 11 SH16088 16088 YDR025W_4_491510_492319_INTRON_46_384 intron 25.617292 158.261024 25.617292 133.643732 79.630512 1.901079508 -0.224091 168 12 SH1569 1569 Leu4 tRNA 16 28 29.071254 177.896664 103.483959 2.014873035 -0.197984 168 13 SH1023 1023 Gly2 3' flank 28.837823 144.476785 86.657304 1.937805174 -0.040387 168 14 SH3739 3739 Val4 5' flank 34.050591 192.754918 113.4027545 2.054623603 -0.073804 168 15 SH19602 19602 AEP2/ATP13 2.1 42.830203 185.29111 114.0606565 2.057135867 0.171954 168 16 SH17888 17888 YLR048W_12_242233_243350_INTRON_91_449 intron 31.852253 224.450217 31.852253 193.597964 112.7251085 2.052020662 -0.161118 168 17 SH5050 5050 snR10 3' 33.512575 160.59942 97.0559975 1.987022377 0.171715 168 18 SH11698 11698 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5376 5391 23505.38335 20121.43183 21813.40759 4.338723514 -0.129108 168 19 SH18854 18854 YNR053C_14_723108_721117_INTRON_811_1341 intron 29.912005 174.781414 29.912005 145.869409 87.890707 1.943942958 0.029059 168 20 SH1147 1147 His1 5' flank 31.778844 150.340671 91.0597575 1.959326489 0.130242 168 21 SH8724 8724 LSR1 / U2 RNA U2 261 277 66.127378 216.908015 141.5176965 2.150810751 0.129537 168 22 SH8296 8296 snoRNA cluster4 intergenic 30.328585 184.547327 30.328585 155.218742 92.7736635 1.967424707 0.007437 168 23 SH1194 1194 Ile1 5' flank 33.267461 194.143739 113.7056 2.055781854 -0.113792 168 24 SH2397 2397 Phe4 tRNA-exon/intron 36 53 30.765421 187.290933 109.028177 2.037538751 -0.146817 168 25 SH4484 4484 U3b (snR17b) 5' 27.299669 127.34078 77.3202245 1.888293106 -0.053237 168 26 SH16970 16970 YGR034W_7_555923_556666_INTRON_20_496 intron 27.473378 196.839166 27.473378 170.365788 98.919583 1.995282277 -0.273184 168 27 SH9583 9583 RUF3 RUF3 301 322 27.629651 134.384809 81.00723 1.908523782 -0.073147 168 28 SH21103 21103 YNL050C spliced 30.576899 199.657749 115.117324 2.061140686 -0.262078 168 29 SH13632 13632 MT ATP6 ATP6 31.657875 211.910181 31.657875 181.252306 106.4550905 2.027166433 -0.057629 168 30 SH14846 14846 MT tRNA Asp 3' 31.791823 187.267131 31.791823 156.475308 94.1335655 1.973744509 0.09869 168 31 SH14587 14587 MT 21S rRNA Sce1 endonuc 33.815425 215.712809 33.815425 182.897384 108.3564045 2.034854586 0.006475 168 32 SH587 587 Gln1 5' flank 30.133536 184.430595 107.2820655 2.030527126 -0.167542 168 33 SH5825 5825 snR35 snR35 311 328 30.240535 143.457291 86.848913 1.938764387 0.065161 168 34 SH6027 6027 snR37 snR37 51 68 39.938465 203.347523 121.642994 2.085087101 -0.082499 168 35 SH7986 7986 snoRNA cluster 2 snR57 26.598607 160.350321 26.598607 134.751714 80.6751605 1.906739838 -0.153622 168 36 SH3652 3652 Val2 tRNA 1 15 164.276632 364.356331 264.3164815 2.422124244 0.018767 168 37 SH5250 5250 snR30 snR30 101 113 30.619559 179.369497 104.994528 2.021166666 -0.10936 168 38 SH4513 4513 U3b (snR17b) U3b 121 138 34.571809 177.007036 105.7894225 2.024442246 0.088216 168 39 SH15359 15359 YBL026W_2_170585_171000_INTRON_55_182 intron 32.690409 196.503311 32.690409 164.812902 98.7516555 1.994544385 0.098969 168 40 SH13989 13989 MT COB intronic 30.778838 191.918236 30.778838 162.139398 96.459118 1.984343287 0.002683 168 41 SH4683 4683 snR4 5' 26.896935 138.198341 82.547638 1.916704651 -0.151614 168 42 SH16707 16707 YGL031C_7_438393_437938_INTRON_1_456 intron 32.698957 218.35353 32.698957 186.654573 109.676765 2.040114632 -0.068057 168 43 SH10846 10846 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1116 1133 149.848415 318.830756 234.3395855 2.369845657 0.163478 168 44 SH18566 18566 YNL012W_14_609682_611661_INTRON_106_189 5' exon 61.745565 237.607347 61.745565 176.861782 119.3036735 2.076653816 0.510469 168 45 SH844 844 Glu2 5' flank - tRNA4 4 34.47516 225.427174 129.951167 2.113780184 -0.406346 168 46 SH18407 18407 YMR125W_13_517538_520445_INTRON_26_347 intron 32.509214 199.87392 32.509214 168.364706 100.43696 2.001893559 0.066916 168 47 SH21271 21271 YPL090C spliced 40.243566 185.620503 112.9320345 2.052817152 0.128978 168 48 SH129 129 Arg1 21-33 21 33 40.289313 187.434872 113.8620925 2.056379161 0.108597 168 49 SH8432 8432 snoRNA cluster 5 intergenic 43.295245 246.76866 43.295245 204.473415 123.88433 2.093016376 -0.046092 168 50 SH3580 3580 Tyr2 3' flank 30.780455 168.753529 99.766992 1.998986878 -0.037578 168 51 SH10127 10127 RUF6 RUF6 481 497 30.897408 167.459949 99.1786785 1.996418317 -0.02267 168 52 SH11950 11950 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6636 6649 56.563411 223.208099 139.885755 2.145773491 -0.054594 168 53 SH6253 6253 snR42 snR42 46 60 46.892662 256.965587 151.9291245 2.181641035 -0.496375 168 54 SH18956 18956 YOL127W_15_80347_81189_INTRON_14_427 intron 35.168918 238.036811 35.168918 203.867893 119.5184055 2.077434791 -0.1706 168 55 SH15918 15918 YDL083C_4_307788_306925_INTRON_25_456 intron 31.280459 206.672925 31.280459 176.392466 103.8364625 2.016349884 -0.052436 168 56 SH16845 16845 YGL178W_7_167356_170575_INTRON_4_643 intron/exon 31.29692 206.473518 31.29692 176.176598 103.736759 2.015932675 -0.050208 168 57 SH162 162 Arg2 5' flank 456.704301 603.121127 529.912714 2.72420434 0.35972 168 58 SH14407 14407 MT 21S rRNA 21S rRNA3 41.08119 234.087214 41.08119 194.006024 117.543607 2.070199014 0.0419 168 59 SH7569 7569 snR189 5' 31.129946 133.515255 82.3226005 1.915519081 0.182181 168 60 SH5200 5200 snR13 3' 31.033654 162.75848 96.896067 1.986306149 0.014487 168 61 SH9981 9981 RUF5-1 RUF5-1 711 732 36.801519 245.301938 141.0517285 2.149378413 -0.55896 168 62 SH12283 12283 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 43.533755 246.391191 43.533755 203.857436 123.6955955 2.092354236 -0.035813 168 63 SH20709 20709 YJL024C spliced 30.785408 183.773694 107.279551 2.030516947 -0.123908 168 64 SH15007 15007 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.802545 184.48297 28.802545 156.680425 92.741485 1.967274046 -0.107298 168 65 SH4543 4543 U3b (snR17b) U3b 271 285 34.606714 153.491904 94.049309 1.973355609 0.277762 168 66 SH10106 10106 RUF6 RUF6 376 394 28.793567 148.837254 88.8154105 1.948488327 -0.066794 168 67 SH18332 18332 YML094W_13_82275_82849_INTRON_17_99 3' exon 32.705459 217.530835 32.705459 185.825376 109.2654175 2.03848273 -0.060306 168 68 SH654 654 Gln2 tRNA 56 70 77.741505 240.542892 159.1421985 2.201785353 0.057697 168 69 SH8240 8240 snoRNA cluster 3; 3' 30.871593 159.496118 30.871593 129.624525 80.248059 1.904434537 0.187677 168 70 SH20328 20328 YER074W spliced 31.919363 206.595732 119.2575475 2.076485874 -0.268248 168 71 SH8431 8431 snoRNA cluster 5 intergenic 418.145967 980.615624 418.145967 563.469657 490.807812 2.690911467 0.363648 168 72 SH2526 2526 Pro1 3' flank 29.146723 156.030129 92.588426 1.966556701 -0.079276 168 73 SH17772 17772 YKL180W_11_109271_110131_INTRON_310_615 intron 29.240943 225.152176 29.240943 196.911233 113.076088 2.053370775 -0.292222 168 74 SH19920 19920 YAL030W spliced 30.337422 190.335893 110.3366575 2.042719823 -0.190813 168 75 SH8495 8495 snR19 / U1 RNA 5' 39.410605 196.397241 117.903923 2.071528256 -0.01101 168 76 SH17717 17717 YKL081W_11_282533_284097_INTRON_206_531 intron 31.596554 217.980474 31.596554 187.38392 109.490237 2.039375396 -0.115722 168 77 SH9011 9011 snR17a / U3a U3a 341 359 31.735391 160.694446 96.2149185 1.983242416 0.069254 168 78 SH21700 21700 copy of SH10875 4812.775548 2349.628486 3581.202017 3.55402882 1.22962 168 79 SH452 452 Asp1 3' flank 33.957494 159.907464 96.932479 1.98646932 0.200757 168 80 SH13914 13914 MT COB Cytbi3 29.951188 200.627475 29.951188 171.676287 100.8137375 2.003519716 -0.106079 168 81 SH13061 13061 MT COX1 intronic 29.919988 192.120203 29.919988 163.200215 96.5601015 1.984797714 -0.061332 168 82 SH19433 19433 YPR132W_16_794960_795762_INTRON_66_430 intron 29.830699 187.447682 29.830699 158.616983 94.223841 1.974160804 -0.044459 168 83 SH17518 17518 YJL136C_10_156971_156248_INTRON_25_484 intron 31.694748 203.425234 31.694748 172.730486 102.212617 2.009504508 -0.006525 168 84 SH17499 17499 YJL041W_10_365480_368069_INTRON_2_119 intron/exon 31.515568 194.745091 31.515568 164.229523 97.8725455 1.990660884 0.034152 168 85 SH19972 19972 YBL072C spliced 35.282179 165.067932 100.1750555 2.000759592 0.23042 168 86 SH2828 2828 Pro7 5' flank 37.039725 210.480842 123.7602835 2.092581296 -0.206511 168 87 SH15323 15323 YAL003W_1_142172_143158_INTRON_81_446 intron 32.920081 220.869638 32.920081 188.949557 110.934819 2.045067879 -0.080605 168 88 SH15090 15090 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.868894 178.450222 28.868894 150.581328 89.725111 1.952914004 -0.07037 168 89 SH12106 12106 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7416 7429 75.477239 230.640566 153.0589025 2.184858595 0.115553 168 90 SH13893 13893 MT COB intronic 74.228784 310.090234 74.228784 236.86145 155.545117 2.191856382 0.047561 168 91 SH18479 18479 YMR143W_13_551927_552902_INTRON_25_568 intron/exon 30.47842 172.316078 30.47842 142.837658 86.658039 1.937808857 0.085004 168 92 SH9153 9153 snR7 U5 RNA U5 36 52 32.31826 188.168069 110.2431645 2.042351671 -0.095714 168 93 SH16054 16054 YDL191W_4_117665_118518_INTRON_4_494 3' exon 33.210787 217.253592 33.210787 185.042805 109.126796 2.037931404 -0.034817 168 94 SH21281 21281 YPL129W spliced 36.042442 185.937475 110.9899585 2.045283689 0.04726 168 95 SH7997 7997 snoRNA cluster 2 intergenic 30.288079 192.992856 30.288079 163.704777 96.996428 1.986755741 -0.038457 168 96 SH15650 15650 YBR189W_2_604466_605466_INTRON_8_420 intron 28.399294 208.091293 28.399294 180.691999 104.5456465 2.019305953 -0.257541 168 97 SH9414 9414 RUF2 5' 28.456266 153.41921 90.937738 1.958744147 -0.11536 168 98 SH14338 14338 MT VAR1 includes 5’ processing site VAR1 28.542433 173.613341 28.542433 146.070908 87.3066705 1.941047426 -0.070622 168 99 SH10067 10067 RUF6 RUF6 181 196 941.406579 1087.958014 1014.682297 3.006330083 0.309702 168 100 SH2055 2055 Lys4 5' flank 28.763494 134.687272 81.725383 1.912356965 0.008856 168 101 SH4029 4029 SRP RNA SRP RNA 36 55 28.87402 150.225048 89.549534 1.95206333 -0.06815 168 102 SH6250 6250 snR42 snR42 31 49 32.893124 157.385158 95.139141 1.978359226 0.157378 168 103 SH14594 14594 MT 21S rRNA Sce1 endonuc 34.957609 255.178048 34.957609 221.220439 128.089024 2.107511916 -0.354957 168 104 SH19472 19472 ADH1 33.047492 186.796471 109.9219815 2.041084549 -0.056639 169 2 SH13033 13033 MT COX1 COX1ai2 28.584538 166.712085 28.584538 139.127547 83.8560425 1.923534362 -0.029565 169 3 SH5228 5228 snR30 5' - 10 -9 10 35.37845 203.044078 119.211264 2.076317293 -0.157578 169 4 SH3680 3680 Val2 3' flank 29.185476 137.794801 83.4901385 1.921635181 0.021754 169 5 SH11204 11204 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2906 2924 125.692984 322.999263 224.3461235 2.35091857 -0.043222 169 6 SH14149 14149 MT COB intronic 28.705876 175.106909 28.705876 147.401033 88.0534545 1.944746399 -0.065661 169 7 SH18930 18930 YOL121C_15_92849_92025_INTRON_21_410 intron 78.656702 322.083569 78.656702 244.426867 161.5417845 2.208284876 0.036044 169 8 SH8396 8396 snoRNA cluster 5 snR190 221.250379 637.739706 221.250379 417.489327 319.369853 2.504293918 0.110451 169 9 SH3412 3412 Thr4 3' flank 31.70633 188.433379 110.0698545 2.041668392 -0.120991 169 10 SH2220 2220 Phe1 5' flank 35.169716 200.389272 117.779494 2.071069684 -0.133101 169 11 SH18723 18723 YNL147W_14_350937_351380_INTRON_19_138 5' exon 33.023469 201.884184 33.023469 169.860715 101.442092 2.006218197 0.087268 169 12 SH3751 3751 Val4 5' flank 29.088685 148.431646 88.7601655 1.948218103 -0.043191 169 13 SH14472 14472 MT 21S rRNA 21S rRNA3 25.230589 160.796538 25.230589 136.565949 80.898269 1.907939229 -0.273299 169 14 SH2402 2402 Phe4 tRNA 61 75 5850.851469 5354.141013 5602.496241 3.748381574 0.176667 169 15 SH13100 13100 MT COX1 COX1ai3 28.500533 224.03634 28.500533 196.535807 112.51817 2.05122266 -0.336285 169 16 SH8144 8144 snoRNA cluster 3; intergenic 33.725059 218.601612 33.725059 185.876553 109.800806 2.040605528 -0.023995 169 17 SH7388 7388 snR68 3' 80.270389 281.125859 180.698124 2.256953644 -0.220721 169 18 SH15112 15112 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF3 exon3 29.948568 167.004228 29.948568 138.05566 84.002114 1.924290216 0.074639 169 19 SH8178 8178 snoRNA cluster 3; snR70 58.520799 254.039243 58.520799 196.518444 127.5196215 2.105577015 0.242036 169 20 SH16632 16632 YFL039C_6_54695_53260_INTRON_11_318 3' exon 31.780016 185.046925 31.780016 154.266909 93.0234625 1.968592501 0.109434 169 21 SH18157 18157 YLR426W_12_987057_988108_INTRON_81_151 intron 30.113758 196.115088 30.113758 167.00133 98.557544 1.993689873 -0.067909 169 22 SH12222 12222 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.278901 178.755845 30.278901 149.476944 89.8779225 1.953653025 0.034569 169 23 SH2199 2199 Met2 3' flank 30.474529 139.99756 85.2360445 1.930623287 0.10042 169 24 SH13126 13126 MT COX1 COX1ai3 28.859227 188.338437 28.859227 160.47921 94.6692185 1.976208792 -0.122624 169 25 SH18302 18302 YML073C_13_124172_123227_INTRON_16_430 intron 30.885801 204.203436 30.885801 174.317635 102.601718 2.011154633 -0.06415 169 26 SH12898 12898 MT COX1 intronic 29.229445 203.999571 29.229445 175.770126 102.4997855 2.010722957 -0.175621 169 27 SH8971 8971 snR17a / U3a U3a 141 156 29.390999 155.773609 92.582304 1.966527984 -0.060623 169 28 SH18843 18843 YNL312W_14_48286_49215_INTRON_8_115 exon/intron 27.671679 207.249568 27.671679 180.577889 104.124784 2.017554114 -0.305419 169 29 SH16305 16305 YDR450W_4_1359912_1360787_INTRON_48_482 intron 31.542281 193.266248 31.542281 162.723967 97.133124 1.987367357 0.045093 169 30 SH11874 11874 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6256 6272 18315.55843 25785.58873 22050.57358 4.343419891 -0.846649 169 31 SH15328 15328 YAL003W_1_142172_143158_INTRON_81_446 intron 36.524945 231.270232 36.524945 195.745287 116.135116 2.064963558 -0.055284 169 32 SH15081 15081 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.967739 203.652774 30.967739 173.685035 102.326387 2.00998764 -0.055503 169 33 SH2918 2918 Pro8 3' flank 32.03384 144.109796 88.071818 1.944836961 0.181117 169 34 SH9902 9902 RUF5-1 RUF5-1 316 335 30.240407 159.030353 94.63538 1.97605353 -0.018258 169 35 SH16274 16274 YDR447C_4_1355542_1354818_INTRON_4_317 intron 43.796727 252.147617 43.796727 209.35089 126.5738085 2.102343848 -0.091812 169 36 SH18815 18815 YNL302C_14_62942_61957_INTRON_21_571 intron 28.537928 210.783704 28.537928 183.245776 105.891852 2.024862544 -0.262697 169 37 SH16086 16086 YDR025W_4_491510_492319_INTRON_46_384 intron 26.709178 195.296527 26.709178 169.587349 98.1482635 1.99188262 -0.328019 169 38 SH14562 14562 MT 21S rRNA 21S rRNA3 28.727969 167.899705 28.727969 140.171736 84.4498525 1.926598895 -0.024851 169 39 SH17454 17454 YIL148W_9_68708_69528_INTRON_9_442 intron 32.683634 220.750408 32.683634 189.066774 110.875204 2.044834432 -0.090287 169 40 SH8970 8970 snR17a / U3a U3a 136 150 36.631759 189.622341 113.12705 2.053566462 0.015995 169 41 SH21724 21724 copy of SH11919 62.064472 203.777299 132.9208855 2.123593226 0.209515 169 42 SH14153 14153 MT COB intronic 28.856108 175.184059 28.856108 147.327951 88.0920295 1.944936616 -0.054281 169 43 SH1699 1699 Leu6 tRNA 61 73 30.760884 162.42047 96.590677 1.98493521 0.000069 169 44 SH4906 4906 snR9 5' 26.832267 118.719458 72.7758625 1.861987361 -0.030441 169 45 SH4838 4838 snR8 5' 26.785475 121.436094 74.1107845 1.869881411 -0.052914 169 46 SH17081 17081 YHL001W_8_104270_105084_INTRON_130_527 5' exon 32.548776 207.93752 32.548776 176.388744 104.46876 2.01898644 0.021886 169 47 SH10871 10871 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1241 1254 17602.10403 13188.14809 15395.12606 4.18738325 0.167855 169 48 SH4437 4437 telomerase RNA telomerase 1221 1238 30.63368 156.423146 93.528413 1.970943565 0.021948 169 49 SH3945 3945 RNase MRP RNaseMRP 141 160 30.697819 149.052628 89.8752235 1.953639983 0.065387 169 50 SH4652 4652 snR3 snR3 176 193 36.630026 179.702428 108.166227 2.034091681 0.13199 169 51 SH4436 4436 telomerase RNA telomerase 1216 1235 28.957797 141.004433 84.981115 1.929322425 -0.012684 169 52 SH9122 9122 snR14 / U4 RNA 3' 44.766961 227.216505 135.991733 2.133512508 -0.261247 169 53 SH5406 5406 snR31 snR31 96 108 40.979685 245.539195 143.25944 2.156123249 -0.492471 169 54 SH5035 5035 snR10 snR10 206 218 106.412949 271.525821 188.969385 2.27639145 0.116433 169 55 SH1734 1734 Leu7 5' flank 28.302606 138.197315 83.2499605 1.920384036 -0.045213 169 56 SH1301 1301 Ile2 3' flank 27.316836 119.364176 73.340506 1.865343902 0.001732 169 57 SH17072 17072 YGR225W_7_945138_946919_INTRON_1184_1276 5' exon 43.066423 221.316323 43.066423 179.2499 111.1581615 2.045941355 0.251005 169 58 SH20640 20640 YHR141C spliced 33.112766 170.426163 101.7694645 2.007617489 0.088939 169 59 SH7 7 Ala1 5' flank 29.092011 165.494188 97.2930995 1.988082039 -0.130879 169 60 SH7667 7667 snoRNA cluster1 snR78 30.95189 221.390847 30.95189 191.438957 111.1954235 2.046086913 -0.176543 169 61 SH16621 16621 YFL039C_6_54695_53260_INTRON_11_318 intron 34.75788 214.622472 34.75788 180.864592 107.811236 2.032664025 0.058266 169 62 SH1116 1116 Gly4 tRNA 56 70 32.727784 149.338627 91.0332055 1.959199836 0.196722 169 63 SH714 714 Gln3 3' flank 28.791697 120.721741 74.756719 1.873650232 0.10044 169 64 SH10505 10505 RUF8 RUF8 451 468 30.702249 178.662906 104.6825775 2.019874407 -0.100309 169 65 SH12116 12116 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7466 7484 30.696486 186.17293 108.434708 2.035168314 -0.142494 169 66 SH6203 6203 snR40 snR40 76 94 43.334876 194.79196 119.063418 2.075778346 0.064713 169 67 SH20012 20012 YBR084C-A spliced 30.740407 166.288932 98.5146695 1.993500905 -0.025064 169 68 SH20210 20210 YDR059C spliced 44.412152 165.164212 104.788182 2.020312306 0.453011 169 69 SH19733 19733 Negative Control 30.833662 160.182648 95.508155 1.980040456 0.016212 169 70 SH21921 21921 copy of SH20201 36.749704 183.4916 110.120652 2.041868774 0.089847 169 71 SH11300 11300 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3386 3403 38.790467 182.278671 110.534569 2.043498122 0.142527 169 72 SH18858 18858 YNR053C_14_723108_721117_INTRON_811_1341 intron 29.084 147.686373 29.084 119.602373 74.3431865 1.871241172 0.128934 169 73 SH17955 17955 YLR185W_12_522665_523290_INTRON_8_366 intron 31.140328 183.116495 31.140328 152.976167 92.0582475 1.964062703 0.074041 169 74 SH13652 13652 MT ATP6 ATP6 29.283363 186.124517 29.283363 157.841154 93.5622585 1.971100697 -0.078919 169 75 SH1303 1303 Ile2 3' flank 31.390624 161.118833 96.2547285 1.983422073 0.046155 169 76 SH496 496 Asp2 tRNA 41 53 6842.085715 7085.539485 6963.8126 3.842847076 -0.06644 169 77 SH9008 9008 snR17a / U3a U3a 326 350 29.686829 137.66075 83.6737895 1.922589438 0.058384 169 78 SH7621 7621 snR189 snR189 176 188 210.920335 419.405681 315.163008 2.498535237 0.047948 169 79 SH18692 18692 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.902613 170.994019 29.902613 142.091406 85.9970095 1.934483349 0.04895 169 80 SH8866 8866 LSR1 / U2 RNA U2 971 988 31.962147 176.6793 104.3207235 2.01837059 -0.013785 169 81 SH4390 4390 telomerase RNA telomerase 986 1005 29.926576 149.382687 89.6546315 1.95257273 0.01079 169 82 SH18031 18031 YLR316C_12_766358_765266_INTRON_230_285 intron 29.849224 210.217954 29.849224 181.36873 105.608977 2.023700836 -0.168254 169 83 SH18927 18927 YOL121C_15_92849_92025_INTRON_21_410 intron 33.728309 214.075608 33.728309 181.347299 107.537804 2.031561164 0.017748 169 84 SH617 617 Gln1 3' flank 39.529888 209.212872 124.37138 2.094720453 -0.153653 169 85 SH20626 20626 YHR101C spliced 29.378708 151.328218 90.353463 1.955944803 -0.038037 169 86 SH13673 13673 MT ATP6 3' 29.198892 196.736968 29.198892 168.538076 98.868484 1.995057875 -0.138033 169 87 SH15681 15681 YBR191W_2_606228_607098_INTRON_12_399 intron 27.076056 161.970367 27.076056 135.894311 81.4851835 1.911078648 -0.12403 169 88 SH18001 18001 YLR287C-A_12_713158_712537_INTRON_4_433 intron 36.670568 210.381359 36.670568 174.710791 105.6906795 2.02403669 0.180851 169 89 SH6156 6156 snR39B 3' 28.749693 141.322553 85.036123 1.929603451 -0.029631 169 90 SH7004 7004 snR60 101-104 + 3' 101 36.361894 195.177608 115.769751 2.063595099 -0.052124 169 91 SH21301 21301 YPL218W spliced 30.466819 147.928785 89.197802 1.950354153 0.055843 169 92 SH13145 13145 MT COX1 intronic 28.469084 181.589237 28.469084 154.120153 91.2946185 1.960445178 -0.118118 169 93 SH6229 6229 snR42 5' 41.84367 194.92086 118.382265 2.073286645 0.042186 169 94 SH11826 11826 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6016 6029 872.265702 907.626901 889.9463015 2.949363803 0.504505 169 95 SH20334 20334 YER074W-A spliced 36.074552 178.711874 107.393213 2.030976836 0.123012 169 96 SH4890 4890 snR8 3' 40.956227 154.832341 97.894284 1.990757334 0.517084 169 97 SH370 370 Asn1 5' flank 292.755619 541.317783 417.036701 2.620174276 -0.002491 169 98 SH19014 19014 YOR182C_15_678792_678190_INTRON_4_414 intron 33.527228 192.001867 33.527228 159.474639 96.5009335 1.984531515 0.179673 169 99 SH13121 13121 MT COX1 COX1ai3 30.784036 177.715404 30.784036 147.931368 89.357702 1.951131992 0.077325 169 100 SH20871 20871 YLR128W spliced 30.953342 173.555608 102.254475 2.009682323 -0.055615 169 101 SH9851 9851 RUF5-1 RUF5-1 61 78 29.143685 162.235992 95.6898385 1.980865822 -0.111089 169 102 SH16419 16419 YER056C-A_5_270183_269421_INTRON_38_434 intron/exon 33.235071 214.752414 33.235071 182.517343 107.876207 2.032925668 -0.010753 169 103 SH8976 8976 snR17a / U3a U3a 166 183 31.359034 165.682292 98.520663 1.993527326 0.015896 169 104 SH2998 2998 Ser2 5' flank 31.430761 152.722584 92.0766725 1.964149616 0.094651 170 2 SH17570 17570 YJL189W_10_75932_76473_INTRON_7_392 intron 29.717156 182.536402 29.717156 153.819246 91.768201 1.962692218 -0.027492 170 3 SH9605 9605 RUF3 RUF3 411 430 29.499775 161.677052 95.5884135 1.980405254 -0.08309 170 4 SH15631 15631 YBR181C_2_592732_591670_INTRON_7_358 3' exon 29.260177 181.109667 29.260177 152.84949 91.0548335 1.959303005 -0.05453 170 5 SH704 704 Gln3 tRNA 51 63 42.744656 197.307793 120.0262245 2.079276145 0.027157 170 6 SH6597 6597 snR47 91-99 + 3' 91 44.281994 169.568365 106.9251795 2.029079988 0.393621 170 7 SH6627 6627 snR48 5' 32.299029 153.652331 92.97568 1.968369363 0.146286 170 8 SH11028 11028 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2026 2044 37619.6714 31147.05188 34383.36164 4.536348335 -0.212951 170 9 SH21827 21827 copy of SH16122 31.697421 164.430109 98.063765 1.991508563 0.043668 170 10 SH19418 19418 YPR132W_16_794960_795762_INTRON_66_430 intron 29.557577 187.943117 29.557577 159.38554 94.4715585 1.97530108 -0.067463 170 11 SH3528 3528 Tyr2 5' flank 33.032202 146.903082 89.967642 1.954086338 0.229257 170 12 SH6687 6687 snR49 5' 29.115261 137.479406 83.2973335 1.920631099 0.018467 170 13 SH7845 7845 snoRNA cluster1 snR74 49.080079 264.137944 49.080079 216.057865 132.568972 2.122441889 -0.087328 170 14 SH21833 21833 copy of SH16333 28.749393 152.590041 90.669717 1.95746226 -0.089701 170 15 SH7975 7975 snoRNA cluster 2 snR57 26.784157 165.738137 26.784157 139.95398 83.3690685 1.921004949 -0.170717 170 16 SH15184 15184 MT COX3 cox3 26.651515 172.565598 26.651515 146.914083 86.782799 1.938433653 -0.219471 170 17 SH14750 14750 MT ORF11; tRNA Leu; tRNA Gln ORF11 31.914023 211.986714 31.914023 181.072691 106.493357 2.027322518 -0.045931 170 18 SH3641 3641 Val2 5' flank 31.829095 172.534427 102.181761 2.009373383 0.002536 170 19 SH3550 3550 Tyr2 tRNA 21 36 64.060035 228.540389 146.300212 2.165244955 -0.004498 170 20 SH11434 11434 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4056 4074 37.199137 168.802557 103.000847 2.012840796 0.256047 170 21 SH10639 10639 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 81 96 1528.04535 2640.058275 2084.051813 3.318908512 -0.462602 170 22 SH8062 8062 snoRNA cluster 2 intergenic/snR61 50.124605 268.685027 50.124605 219.560422 134.8425135 2.129826839 -0.108195 170 23 SH256 256 Arg3 3' flank 107.568004 301.108745 204.3383745 2.310349934 -0.069224 170 24 SH16888 16888 YGL189C_7_148970_148233_INTRON_1_368 intron 31.544712 201.065605 31.544712 170.520893 101.0328025 2.0044624 -0.002315 170 25 SH3447 3447 Trp1 tRNA 66 82 62.080035 235.430484 148.7552595 2.17247233 -0.091583 170 26 SH8263 8263 snoRNA cluster4 snR67 105.824354 423.714888 105.824354 318.890534 212.357444 2.327067489 -0.193942 170 27 SH5120 5120 snR11 snR11 201 215 31.149097 167.795594 99.4723455 1.997702358 -0.009539 170 28 SH4655 4655 snR3 191-195 + 3' 191 25.714956 119.363792 72.539374 1.860573803 -0.122164 170 29 SH18640 18640 YNL096C_14_444312_443395_INTRON_145_489 3' exon 31.413591 172.479886 31.413591 142.066295 86.739943 1.938219132 0.15211 170 30 SH6285 6285 snR42 snR42 206 224 27.783571 167.643595 97.713583 1.989954938 -0.236836 170 31 SH14186 14186 MT COB Exon6 35.403974 235.170717 35.403974 200.766743 118.0853585 2.072196052 -0.132503 170 32 SH922 922 Glu3 3' flank 27.034652 138.995151 83.0149015 1.919156057 -0.145875 170 33 SH7730 7730 snoRNA cluster1 intergenic 31.860635 196.077304 31.860635 165.216669 98.538652 1.993606617 0.04842 170 34 SH11210 11210 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2936 2952 39.590242 177.801655 108.6959485 2.036213357 0.211126 170 35 SH9362 9362 RUF1 RUF1 386 402 32.10117 156.871124 94.486147 1.975368139 0.115143 170 36 SH11463 11463 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4201 4216 1386.542632 1571.853312 1479.197972 3.170026303 0.224683 170 37 SH13258 13258 MT COX1 COX1-ai4 35.253312 230.610952 35.253312 196.35764 115.805476 2.063729096 -0.087157 170 38 SH3763 3763 Val4 tRNA 41 53 38.294422 187.846482 113.070452 2.053349128 0.067892 170 39 SH9299 9299 RUF1 RUF1 71 89 28.733687 148.32866 88.5311735 1.947096221 -0.06851 170 40 SH10403 10403 RUF8 5' 30.749677 162.021521 96.385599 1.984012151 0.001305 170 41 SH11017 11017 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1971 1989 4123.333352 3324.97234 3724.152846 3.571027497 0.478795 170 42 SH16448 16448 YER074W_5_306319_307192_INTRON_4_469 3' exon 34.695422 201.575686 34.695422 167.880264 101.287843 2.005557323 0.181823 170 43 SH9528 9528 RUF3 RUF3 26 40 32.722519 173.197274 102.9598965 2.012668097 0.05039 170 44 SH13866 13866 MT COB intronic 28.792895 204.406705 28.792895 176.61381 102.7033525 2.01158462 -0.208617 170 45 SH10762 10762 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 696 713 48.153879 225.087322 136.6206005 2.13551619 -0.190413 170 46 SH4692 4692 snR4 5' - 13 13 49.061414 203.763206 126.41231 2.101789367 0.041191 170 47 SH5081 5081 snR11 snR11 6 25 30.626541 130.5873 80.6069205 1.90637233 0.165125 170 48 SH15357 15357 YBL026W_2_170585_171000_INTRON_55_182 intron 28.715254 178.64248 28.715254 150.927226 89.82124 1.953379046 -0.083396 170 49 SH18230 18230 YML026C_13_223828_222987_INTRON_48_448 intron 32.649981 202.737833 32.649981 171.087852 101.8689165 2.008041687 0.058691 170 50 SH14885 14885 MT tRNA Ala 3' 30.805297 186.51678 30.805297 156.711483 93.75839 1.972010141 0.03205 170 51 SH9055 9055 snR17a / U3a 3' 30.920507 158.589584 94.7550455 1.976602344 0.030146 170 52 SH4041 4041 SRP RNA SRP RNA 96 113 31.039465 164.908028 97.9737465 1.991109716 0.001507 170 53 SH8895 8895 LSR1 / U2 RNA U2 1116 1134 29.178172 131.919687 80.5489295 1.906059773 0.055183 170 54 SH13774 13774 MT COB intronic 28.261576 167.788588 28.261576 140.527012 84.394294 1.926313084 -0.061296 170 55 SH4752 4752 snR5 5' 29.273656 157.872138 93.572897 1.971150075 -0.079766 170 56 SH19120 19120 YPL031C_16_493033_492014_INTRON_18_119 intron 33.2001 211.884408 33.2001 179.684308 106.442204 2.027113859 0.014384 170 57 SH16976 16976 YGR034W_7_555923_556666_INTRON_20_496 intron 70.704911 287.538848 70.704911 217.833937 144.269424 2.159174298 0.175892 170 58 SH18047 18047 YLR333C_12_796335_795573_INTRON_1_423 intron 31.07711 190.911189 31.07711 160.834079 95.9555945 1.9820703 0.029188 170 59 SH21571 21571 copy of SH5386 32.927317 204.474952 118.7011345 2.07445487 -0.22367 170 60 SH17753 17753 YKL157W_11_154993_158183_INTRON_282_664 intron 38.671252 224.429774 38.671252 186.758522 112.714887 2.05198128 0.087471 170 61 SH11040 11040 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2086 2101 49886.17195 32074.16743 40980.16969 4.612573752 0.106967 170 62 SH18049 18049 YLR333C_12_796335_795573_INTRON_1_423 intron 36.537314 215.988966 36.537314 180.451652 108.494483 2.035407655 0.121933 170 63 SH18542 18542 YMR230W_13_732413_733140_INTRON_53_462 intron 32.615961 225.345213 32.615961 193.729252 113.1726065 2.053741318 -0.133878 170 64 SH13192 13192 MT COX1 Exon4 30.667976 196.103327 30.667976 166.435351 98.5516635 1.993663959 -0.030368 170 65 SH1185 1185 His1 3' flank 33.584465 190.12433 111.8543975 2.048653063 -0.067129 170 66 SH4886 4886 snR8 3' 28.765298 148.057932 88.411615 1.946509324 -0.064771 170 67 SH8235 8235 snoRNA cluster 3; 3' 30.73675 186.298937 30.73675 156.562187 93.6494685 1.971505317 0.028199 170 68 SH3312 3312 Thr3 5' flank 30.775622 140.970887 85.8732545 1.933857922 0.115727 170 69 SH9107 9107 snR14 / U4 RNA 151-160 + 3' 151 30.818169 156.375165 93.596667 1.971260384 0.034657 170 70 SH10726 10726 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 516 532 1889.178785 1874.885549 1882.032167 3.274627042 0.353166 170 71 SH4230 4230 telomerase RNA telomerase 186 203 30.921408 178.400103 104.6607555 2.019783865 -0.085516 170 72 SH18942 18942 YOL127W_15_80347_81189_INTRON_14_427 5' exon 58.479375 305.971378 58.479375 248.492003 153.485689 2.186067888 -0.252072 170 73 SH9878 9878 RUF5-1 RUF5-1 196 210 33.040359 170.925175 101.982767 2.008526791 0.081877 170 74 SH11706 11706 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5416 5429 76.711468 225.624418 151.167943 2.179459704 0.174076 170 75 SH18187 18187 YML024W_13_225889_226697_INTRON_4_401 exon/intron 29.340052 197.888315 29.340052 169.548263 99.4441575 1.997579273 -0.132866 170 76 SH14897 14897 MT tRNA Ile tRNA 29.477058 196.371954 29.477058 167.894896 98.685977 1.994255445 -0.115259 170 77 SH13254 13254 MT COX1 COX1-ai4 29.618149 202.689562 29.618149 174.071413 101.844781 2.007938779 -0.141059 170 78 SH3038 3038 Ser2 3' flank 31.751869 178.238972 104.9954205 2.021170357 -0.035054 170 79 SH13872 13872 MT COB intronic 29.846603 193.664591 29.846603 164.817988 97.3322955 1.988256966 -0.074419 170 80 SH5233 5233 snR30 snR30 16 32 31.914207 167.262501 99.588354 1.998208554 0.039057 170 81 SH8890 8890 LSR1 / U2 RNA U2 1091 1103 33.925898 174.96556 104.445729 2.018890685 0.085198 170 82 SH6140 6140 snR39B snR39B 41 57 36.8752 199.38138 118.12829 2.072353917 -0.088617 170 83 SH11899 11899 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6381 6394 40432.8377 35471.11064 37951.97417 4.579234372 -0.325622 170 84 SH7961 7961 snoRNA cluster 2 5' 35.552627 191.021679 35.552627 156.469052 96.0108395 1.982320267 0.308655 170 85 SH11249 11249 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3131 3148 20939.96928 18294.22489 19617.09708 4.292634741 -0.12758 170 86 SH5557 5557 snR33 snR33 71 88 32.185239 156.284027 94.234633 1.974210544 0.123842 170 87 SH430 430 Asp1 5' flank 29.067386 172.71203 100.889708 2.003846865 -0.168182 170 88 SH18021 18021 YLR306W_12_744151_744851_INTRON_4_137 intron 28.92 172.243323 28.92 144.323323 86.6216615 1.93762651 -0.033565 170 89 SH7649 7649 snoRNA cluster1 5' 28.790766 162.196149 28.790766 134.405383 81.5980745 1.911679911 0.012485 170 90 SH18372 18372 YMR079W_13_424988_426058_INTRON_10_165 intron 28.679848 171.303952 28.679848 143.624104 86.151976 1.935265243 -0.047343 170 91 SH14784 14784 MT ORF11; tRNA Leu; tRNA Gln 3' 28.587403 175.973445 28.587403 148.386042 88.4867225 1.946878109 -0.079561 170 92 SH9213 9213 snR6 / U6 RNA 5' 28.515582 141.3643 84.939941 1.929111955 -0.047081 170 93 SH7677 7677 snoRNA cluster1 snR78/intergenic 28.469495 169.376908 28.469495 141.907413 85.188454 1.930380737 -0.053476 170 94 SH17088 17088 YHL001W_8_104270_105084_INTRON_130_527 intron 34.213118 187.68367 34.213118 154.470552 94.341835 1.974704319 0.249922 170 95 SH13738 13738 MT COB Exon1 28.4854 181.762873 28.4854 154.277473 91.3814365 1.960857981 -0.117755 170 96 SH14396 14396 MT 21S rRNA 21S rRNA3 175.473242 535.620344 175.473242 361.147102 268.310172 2.428637138 0.106909 170 97 SH9382 9382 RUF1 RUF1 486 502 143.66063 340.562623 242.1116265 2.384015645 -0.00177 170 98 SH15517 15517 YBR048W_2_332790_333771_INTRON_46_556 intron 54.229546 267.923879 54.229546 214.694333 134.4619395 2.128599371 -0.003868 170 99 SH20378 20378 YFL034C-A spliced 536.044076 684.404412 610.224244 2.785489458 0.351004 170 100 SH19042 19042 YOR234C_15_779404_778554_INTRON_20_546 intron 98.556237 383.917102 98.556237 286.360865 192.458551 2.284337212 -0.059933 170 101 SH16652 16652 YFR031C-A_6_221405_220494_INTRON_5_151 intron 29.406663 182.14652 29.406663 153.739857 91.57326 1.961768675 -0.048871 170 102 SH20152 20152 YDL125C spliced 29.562951 185.21298 107.3879655 2.030955615 -0.207579 170 103 SH5548 5548 snR33 snR33 26 43 31.696715 192.571035 112.133875 2.04973683 -0.158007 170 104 SH8835 8835 LSR1 / U2 RNA U2 816 828 33.814531 161.8846 97.8495655 1.990558902 0.180385 171 2 SH6795 6795 snR50 3' 27.806513 138.461144 83.1338285 1.919777781 -0.083942 171 3 SH4570 4570 U3b (snR17b) U3b 406 422 29.589034 162.604751 96.0968925 1.982709344 -0.081455 171 4 SH13889 13889 MT COB intronic 27.34494 177.357614 27.34494 151.012674 89.178807 1.950261658 -0.186819 171 5 SH8482 8482 snR19 / U1 RNA 5' 31.00861 163.940099 97.4743545 1.988890368 0.005629 171 6 SH20745 20745 YJL205C-A spliced 28.7572 145.902425 87.3298125 1.941162528 -0.053935 171 7 SH20538 20538 YGR183C spliced 28.466585 136.861556 82.6640705 1.917316787 -0.025477 171 8 SH19401 19401 YPR063C_16_678315_677807_INTRON_42_127 intron 31.987205 199.017736 31.987205 168.030531 100.008868 2.000038512 0.038673 171 9 SH10423 10423 RUF8 RUF8 41 58 33.572653 159.245781 96.409217 1.984118556 0.183663 171 10 SH19703 19703 Negative Control 31.418221 157.653788 94.5360045 1.975597243 0.068079 171 11 SH11118 11118 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2476 2492 84.338732 247.95056 166.144646 2.220486351 0.071074 171 12 SH9642 9642 RUF4 5' - 1 -14 1 38.352182 198.974641 118.6634115 2.07431683 -0.057143 171 13 SH11019 11019 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1981 1998 172.260844 392.543697 282.4022705 2.450868184 -0.062383 171 14 SH21864 21864 copy of SH19499 34.282377 195.670934 114.9766555 2.060609672 -0.099286 171 15 SH6656 6656 snR48 106-113 + 3' 106 26.868026 139.081799 82.9749125 1.918946803 -0.159107 171 16 SH14386 14386 MT 21S rRNA 5' 27.651298 186.567825 27.651298 159.916527 93.7839125 1.972128347 -0.208513 171 17 SH16029 16029 YDL191W_4_117665_118518_INTRON_4_494 exon/intron 26.649971 175.855409 26.649971 150.205438 88.4277045 1.946588351 -0.23686 171 18 SH11129 11129 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2531 2544 5702.914101 8530.863368 7116.888735 3.852290176 -0.597514 171 19 SH3600 3600 Val1 5' flank - tRNA12 12 95.783782 262.921616 179.352699 2.253707917 0.076494 171 20 SH2316 2316 Phe3 5' flank 34.614754 165.793474 100.204114 2.000885552 0.199868 171 21 SH3910 3910 RNase MRP 5' 37.387903 157.160286 97.2740945 1.987997197 0.382702 171 22 SH5800 5800 snR35 snR35 186 208 32.115023 171.729413 101.922218 2.008268866 0.024006 171 23 SH18665 18665 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.458246 200.622971 30.458246 171.164725 100.8114855 2.003510014 -0.071664 171 24 SH17024 17024 YGR148C_7_788173_787307_INTRON_1_392 intron 30.619191 180.538234 30.619191 150.919043 90.769117 1.957938111 0.049984 171 25 SH3876 3876 RNaseP RNaseP 346 360 32.609769 179.312175 105.960972 2.025145934 -0.003609 171 26 SH1637 1637 Leu5 tRNA-intron 51 67 30.929424 169.288195 100.1088095 2.000472297 -0.031767 171 27 SH9556 9556 RUF3 RUF3 166 178 5188.621467 5193.332679 5190.977073 3.715249111 0.069525 171 28 SH8746 8746 LSR1 / U2 RNA U2 371 387 75.884225 199.073546 137.4788855 2.138236003 0.419359 171 29 SH10135 10135 RUF6 RUF6 521 536 31.279383 156.723566 94.0014745 1.973134666 0.063682 171 30 SH20108 20108 YDL064W spliced 40.71011 198.61222 119.661165 2.077953227 -0.017169 171 31 SH3325 3325 Thr3 5' flank 29.592162 164.012775 96.8024685 1.985886432 -0.08822 171 32 SH246 246 Arg3 3' flank 27.803619 145.715645 86.759632 1.938317701 -0.123958 171 33 SH10892 10892 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1346 1361 30497.81161 38351.74199 34424.7768 4.536871133 -0.81567 171 34 SH13527 13527 MT COX1 intronic 27.985772 163.833489 27.985772 136.847717 82.4167445 1.916015456 -0.061274 171 35 SH20147 20147 YDL115C spliced 31.884382 171.321606 101.602994 2.006906506 0.012947 171 36 SH15931 15931 YDL108W_4_267697_268698_INTRON_29_109 3' exon 39.64949 206.260153 39.64949 167.610663 103.6300765 2.015485819 0.340734 171 37 SH9921 9921 RUF5-1 RUF5-1 411 429 32.177089 180.523444 106.3502665 2.026738583 -0.030971 171 38 SH20864 20864 YLR093C spliced 32.331816 163.082603 97.7072095 1.98992661 0.089073 171 39 SH20679 20679 YIL106W spliced 32.475613 181.600785 107.038199 2.029538793 -0.029949 171 40 SH3885 3885 RNaseP 3' 26.787873 130.451863 78.619868 1.89553231 -0.112163 171 41 SH15823 15823 YDL064W_4_337486_338069_INTRON_39_148 intron 30.733083 206.42832 30.733083 176.695237 103.71416 2.015838054 -0.08718 171 42 SH1530 1530 Leu3 3' flank 26.88509 107.737254 67.311172 1.828087152 0.054655 171 43 SH16513 16513 YER117W_5_396765_397649_INTRON_43_513 intron 26.881703 185.714003 26.881703 159.8323 93.3570015 1.970146894 -0.267037 171 44 SH9688 9688 RUF4 RUF4 216 232 28.791454 170.091381 99.4414175 1.997567306 -0.174628 171 45 SH19473 19473 ADH1 32.623796 177.369424 104.99661 2.021175277 0.015288 171 46 SH16997 16997 YGR118W_7_726968_727725_INTRON_66_385 intron 36.457337 195.532528 36.457337 160.075191 98.266264 1.992404445 0.321498 171 47 SH14204 14204 MT COB 3' 30.634683 173.679316 30.634683 144.044633 87.339658 1.941211487 0.0888 171 48 SH12368 12368 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.657363 196.103398 30.657363 166.446035 98.551699 1.993664116 -0.03108 171 49 SH747 747 Gln4 tRNA 6 23 69.679343 200.100221 134.889782 2.129979053 0.339156 171 50 SH18196 18196 YML024W_13_225889_226697_INTRON_4_401 intron 32.762659 202.00094 32.762659 170.238281 101.50047 2.006468053 0.070189 171 51 SH20873 20873 YLR185W spliced 59.349635 272.735694 166.0426645 2.220219694 -0.430242 171 52 SH10780 10780 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 786 806 29.095281 188.924918 109.0100995 2.037466736 -0.257549 171 53 SH1269 1269 Ile2 tRNA-intron 41 57 29.190373 184.627155 106.908764 2.029013309 -0.22807 171 54 SH11841 11841 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6091 6104 977.324937 1222.582743 1099.95384 3.04137446 0.170716 171 55 SH21580 21580 copy of SH5869 33.210154 181.163378 107.186766 2.030141168 0.000914 171 56 SH10102 10102 RUF6 RUF6 356 374 31.202671 150.728262 90.9654665 1.958876551 0.090184 171 57 SH20696 20696 YIL148W spliced 29.159453 131.560863 80.360158 1.905040782 0.055954 171 58 SH1838 1838 Leu9 5' flank 31.015558 148.103402 89.55948 1.952111563 0.091933 171 59 SH5294 5294 snR30 snR30 321 333 33294.00857 26795.16651 30044.58754 4.477766246 -0.132576 171 60 SH343 343 Arg5 tRNA 51 63 46.372892 220.999146 133.686019 2.126085991 -0.176036 171 61 SH9911 9911 RUF5-1 RUF5-1 361 378 32.643894 159.958717 96.3013055 1.983632175 0.126681 171 62 SH14630 14630 MT 21S rRNA Sce1 endonuc 30.653324 153.983978 30.653324 124.330654 77.491989 1.889256808 0.205228 171 63 SH9155 9155 snR7 U5 RNA U5 46 62 34.505807 131.748694 83.1272505 1.919743416 0.408032 171 64 SH21060 21060 YMR194W spliced 34.517787 182.603121 108.560454 2.035671651 0.033819 171 65 SH11679 11679 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5281 5294 85.226762 242.164303 163.6955325 2.214036827 0.127034 171 66 SH21004 21004 YML094W spliced 30.716382 174.353434 102.534908 2.010871746 -0.074641 171 67 SH8919 8919 LSR1 / U2 RNA 3' 30.758336 177.459787 104.1090615 2.017488532 -0.090032 171 68 SH5013 5013 snR10 snR10 96 117 28.853737 134.654094 81.7539155 1.912508562 0.015646 171 69 SH14415 14415 MT 21S rRNA 21S rRNA3 109.93491 423.303502 109.93491 314.368592 212.151751 2.326646621 -0.129023 171 70 SH8237 8237 snoRNA cluster 3; 3' 58.249057 233.505861 58.249057 176.256804 117.2529305 2.069123706 0.477922 171 71 SH8456 8456 snoRNA cluster 5 snR128 36.768876 197.450577 36.768876 161.681701 99.2252885 1.99662237 0.31484 171 72 SH8283 8283 snoRNA cluster4 intergenic 29.007991 198.098137 29.007991 170.090146 99.5490685 1.998037201 -0.159072 171 73 SH4522 4522 U3b (snR17b) U3b 166 181 29.074774 149.261255 89.1680145 1.950209096 -0.048542 171 74 SH6742 6742 snR49 3' 29.162788 145.900603 87.5316955 1.942165341 -0.024429 171 75 SH9774 9774 RUF4 RUF4 646 663 49.042912 223.056033 136.0494725 2.133696862 -0.15791 171 76 SH20521 20521 YGR034W spliced 33.36169 155.265348 94.313519 1.974573949 0.197597 171 77 SH10523 10523 RUF8 RUF8 541 560 29.532315 176.646057 103.089186 2.01321311 -0.161401 171 78 SH6585 6585 snR47 snR47 31 48 31.655929 177.174076 104.4150025 2.018762903 -0.034623 171 79 SH18485 18485 YMR194W_13_651144_651909_INTRON_17_479 intron 45.831962 245.4139 45.831962 200.581938 123.20695 2.090635207 0.033324 171 80 SH685 685 Gln3 5' flank 31.825351 142.141718 86.9835345 1.939437051 0.178706 171 81 SH15855 15855 YDL079C_4_314747_312950_INTRON_413_704 5' exon 29.823305 205.81124 29.823305 176.987935 103.40562 2.014544143 -0.145036 171 82 SH11591 11591 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4841 4854 31.783445 185.159218 108.4713315 2.035314971 -0.088503 171 83 SH10495 10495 RUF8 RUF8 401 417 36.689519 198.575854 117.6326865 2.070528016 -0.083372 171 84 SH7037 7037 snR62 5' 33.53859 184.349546 108.944068 2.037203588 -0.016717 171 85 SH20787 20787 YKL081W spliced 35.354944 158.070896 96.71292 1.985484496 0.287883 171 86 SH1552 1552 Leu4 5' flank 31.225896 153.302722 92.264309 1.965033734 0.078008 171 87 SH609 609 Gln1 3' flank 29.110108 141.414205 85.2621565 1.930756313 -0.003897 171 88 SH18856 18856 YNR053C_14_723108_721117_INTRON_811_1341 intron 30.931682 165.056681 30.931682 135.124999 83.0283405 1.919226358 0.159385 171 89 SH20578 20578 YHR016C spliced 36.649927 184.542549 110.596238 2.043740354 0.075485 171 90 SH18690 18690 YNL112W_14_413636_416278_INTRON_1274_2275 intron 32.642562 219.467497 32.642562 187.824935 110.2337485 2.042314576 -0.080673 171 91 SH21322 21322 YPR028W spliced 30.615319 182.527254 106.5712865 2.027640208 -0.12735 171 92 SH4939 4939 snR9 snR9 101 120 63.47122 207.35401 135.412615 2.131659125 0.18952 171 93 SH4233 4233 telomerase RNA telomerase 201 213 58.538061 205.272885 131.905473 2.120262816 0.149575 171 94 SH2328 2328 Phe3 5' flank 70.175673 223.046747 146.61121 2.166167178 0.121427 171 95 SH10997 10997 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1871 1888 34042.23941 33218.63228 33630.43585 4.526732496 -0.444873 171 96 SH8353 8353 snoRNA cluster4 3' 53.92924 281.552483 53.92924 228.623243 141.2762415 2.150069132 -0.141757 171 97 SH16107 16107 YDR064W_4_579453_580447_INTRON_22_560 intron 32.724121 206.720618 32.724121 174.996497 103.860309 2.01644961 0.039981 171 98 SH11878 11878 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6276 6292 113.343519 264.401542 188.8725305 2.276168799 0.228684 171 99 SH797 797 Glu1 tRNA 1 17 2554.468613 2518.414142 2536.441378 3.404224829 0.289978 171 100 SH10547 10547 RUF8 RUF8 661 682 29.443833 145.425569 87.434701 1.941683829 -0.001688 171 101 SH2715 2715 Pro5 5' flank 29.651637 150.269541 89.960589 1.95405229 -0.013159 171 102 SH11319 11319 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3481 3498 8490.607477 8098.635087 8294.621282 3.918796562 0.000206 171 103 SH8086 8086 snoRNA cluster 2 3' 32.005804 180.320762 32.005804 149.314958 90.660381 1.95741754 0.150556 171 104 SH14769 14769 MT ORF11; tRNA Leu; tRNA Gln orf11 / tRNA Leu 36.212547 210.266205 36.212547 175.053658 105.6331025 2.023800035 0.162486 172 2 SH15997 15997 YDL137W_4_216158_217074_INTRON_1_332 5' exon 29.909769 233.286679 29.909769 204.37691 117.1433395 2.068717601 -0.327926 172 3 SH6467 6467 snR45 3' 29.650894 155.068999 92.3599465 1.965483673 -0.03868 172 4 SH7256 7256 snR65 snR65 56 75 27.386452 146.425898 86.906175 1.939050636 -0.159587 172 5 SH2542 2542 Pro2 5' flank 29.074722 155.586197 92.3304595 1.965344997 -0.082101 172 6 SH16290 16290 YDR450W_4_1359912_1360787_INTRON_48_482 intron 32.654777 217.503849 32.654777 185.849072 109.2519245 2.038429096 -0.062379 172 7 SH6322 6322 snR42 3' 30.386451 164.768956 97.5777035 1.989350593 -0.037384 172 8 SH3130 3130 Ser4 tRNA 56 72 52.957938 194.44628 123.702109 2.092377104 0.196588 172 9 SH8359 8359 snoRNA cluster4 3' 26.026185 171.904966 26.026185 146.878781 86.452483 1.936777471 -0.269289 172 10 SH21467 21467 copy of SH1003 100.736286 292.06802 196.402153 2.293146244 -0.076372 172 11 SH1809 1809 Leu8 tRNA 71 85 2841.571881 4062.652162 3452.112022 3.53808488 -0.323418 172 12 SH1325 1325 Ile3 tRNA 6 22 47.599131 178.894484 113.2468075 2.054025968 0.315597 172 13 SH13746 13746 MT COB Exon1 28.077316 182.455209 28.077316 155.377893 91.7276045 1.962500052 -0.153459 172 14 SH125 125 Arg1 1-13 1 13 36.165878 162.404624 99.285251 1.996884738 0.287503 172 15 SH15545 15545 YBR078W_2_393082_394818_INTRON_59_388 intron 28.749452 164.754748 28.749452 137.005296 82.877374 1.918435982 -0.00547 172 16 SH4823 4823 snR5 3' 32.263643 138.854108 85.5588755 1.932265068 0.226048 172 17 SH2378 2378 Phe4 5' flank 27.648754 157.6011 92.624927 1.966727879 -0.196889 172 18 SH4302 4302 telomerase RNA telomerase 546 565 26.680235 132.013309 79.346772 1.899529263 -0.130305 172 19 SH18161 18161 YLR448W_12_1028848_1029762_INTRON_16_399 5' exon 57.287666 283.089049 57.287666 226.801383 142.0445245 2.152424497 -0.078901 172 20 SH15064 15064 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.439738 151.541456 28.439738 124.101718 76.270728 1.882357892 0.052259 172 21 SH12580 12580 MT_15S MT_15S 158.713142 576.284485 158.713142 418.571343 288.6422425 2.46035989 -0.26707 172 22 SH9045 9045 snR17a / U3a 3' 32.180952 166.542872 99.361912 1.99721994 0.058997 172 23 SH2820 2820 Pro7 5' flank 29.589631 136.967725 83.278678 1.920533822 0.05541 172 24 SH9643 9643 RUF4 5' - 5 -9 5 34.27292 183.755402 109.014161 2.037482917 0.014676 172 25 SH5104 5104 snR11 snR11 121 139 30.763652 155.61096 93.187306 1.969356757 0.034951 172 26 SH7397 7397 snR68 3' 34.558075 175.968823 105.263449 2.022277596 0.097666 172 27 SH937 937 Gly1 5' flank 33.752742 164.867729 99.3102355 1.996994012 0.158414 172 28 SH11885 11885 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6311 6324 46.810757 189.464385 118.137571 2.072388037 0.175046 172 29 SH11601 11601 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4891 4911 7165.143641 2680.585249 4922.864445 3.692217877 1.538642 172 30 SH19426 19426 YPR132W_16_794960_795762_INTRON_66_430 intron 30.287383 194.824809 30.287383 165.537426 97.9124045 1.990837716 -0.048216 172 31 SH21009 21009 YML124C spliced 31.279349 157.024415 94.151882 1.973829006 0.062126 172 32 SH6545 6545 snR46 3' 31.348443 156.968855 94.158649 1.973860219 0.066992 172 33 SH614 614 Gln1 3' flank 27.694034 119.772653 73.7333435 1.867663928 0.027039 172 34 SH15347 15347 YBL018C_2_186436_185960_INTRON_48_122 intron 29.65324 208.480183 29.65324 179.826943 104.7400915 2.020112949 -0.171895 172 35 SH16443 16443 YER074W_5_306319_307192_INTRON_4_469 intron 27.887417 176.985998 27.887417 150.098581 88.992999 1.949355842 -0.140715 172 36 SH19932 19932 YBL026W spliced 46.950186 213.88621 130.418198 2.115338195 -0.095628 172 37 SH7181 7181 snR64 5' 2630.540815 2324.041792 2477.291304 3.393977078 0.454539 172 38 SH1758 1758 Leu7 3' flank 34.048798 153.959037 94.0039175 1.973145953 0.244292 172 39 SH5341 5341 snR30 snR30 556 572 34.23128 169.145257 101.6882685 2.007270852 0.153022 172 40 SH20782 20782 YKL006W spliced 34.390341 190.646167 112.518254 2.051222984 -0.043348 172 41 SH21238 21238 YOR293W spliced 32.573255 161.987166 97.2802105 1.988024502 0.109828 172 42 SH10238 10238 RUF6 1036-1051 + 3' 1036 28.762644 162.792899 95.7777715 1.981264728 -0.141177 172 43 SH15845 15845 YDL075W_4_322225_322987_INTRON_58_478 intron 28.780201 207.012233 28.780201 179.232032 104.0061165 2.01705888 -0.224392 172 44 SH10205 10205 RUF6 RUF6 871 893 28.765315 171.935855 100.350585 2.001519909 -0.18525 172 45 SH17991 17991 YLR287C-A_12_713158_712537_INTRON_4_433 5' exon 28.733667 168.934029 28.733667 141.200362 84.9670145 1.929250359 -0.030131 172 46 SH4879 4879 snR8 176-190 + 3' 176 30.637797 147.987223 89.31251 1.950912295 0.067137 172 47 SH8838 8838 LSR1 / U2 RNA U2 831 848 42.247849 173.73211 107.9899795 2.033383459 0.307519 172 48 SH5857 5857 snR35 snR35 471 488 32.590745 172.351466 102.4711055 2.010601422 0.04782 172 49 SH7935 7935 snoRNA cluster1 snR72/3' 30.722615 192.439819 30.722615 162.717204 96.7199095 1.985515881 -0.004086 172 50 SH18212 18212 YML025C_13_225365_224406_INTRON_28_126 exon/intron 30.825515 196.452395 30.825515 166.62688 98.7261975 1.99443241 -0.021958 172 51 SH17622 17622 YJR094W-A_10_608000_608553_INTRON_3_277 exon/intron 29.972755 239.056879 29.972755 210.084124 120.0284395 2.07928416 -0.371882 172 52 SH15270 15270 MT 9S rRNA 9S 29.112582 201.450683 29.112582 173.338101 101.2253415 2.005289251 -0.168954 172 53 SH15654 15654 YBR189W_2_604466_605466_INTRON_8_420 intron 33.143185 247.809494 33.143185 215.666309 124.404747 2.094836952 -0.335101 172 54 SH2860 2860 Pro7 3' flank 31.234003 122.009934 76.6219685 1.884353305 0.259435 172 55 SH4386 4386 telomerase RNA telomerase 966 985 31.239087 176.527489 103.883288 2.016545687 -0.055688 172 56 SH13579 13579 MT COX1 Exon 6 29.220279 171.799254 29.220279 143.578975 86.399627 1.936511868 -0.007781 172 57 SH11575 11575 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4761 4778 38.952162 159.699448 99.325805 1.997062094 0.404756 172 58 SH14134 14134 MT COB intronic 27.059681 145.233388 27.059681 119.173707 73.116694 1.864016546 -0.016327 172 59 SH16487 16487 YER102W_5_362729_363698_INTRON_1_360 intron 30.837073 229.919369 30.837073 200.082296 115.4596845 2.062430366 -0.255513 172 60 SH12865 12865 MT COX1 COX1ai1 30.723748 253.865039 30.723748 224.141291 127.4325195 2.10528027 -0.472675 172 61 SH21155 21155 YNL265C spliced 30.643663 183.681231 107.162447 2.030042622 -0.132023 172 62 SH17709 17709 YKL081W_11_282533_284097_INTRON_206_531 intron 34.471834 217.05121 34.471834 183.579376 109.025605 2.037528505 0.023226 172 63 SH16585 16585 YFL034C-A_6_64931_64242_INTRON_13_333 intron 28.675299 170.148191 28.675299 142.472892 85.5740955 1.932342317 -0.041405 172 64 SH16536 16536 YER131W_5_423587_424307_INTRON_1_361 intron 28.707304 157.130762 28.707304 129.423458 79.065381 1.897986368 0.03672 172 65 SH10381 10381 RUF7 3' 30.694679 181.824024 106.2593515 2.026367161 -0.118589 172 66 SH11617 11617 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4971 4986 30083.00555 25436.14724 27759.5764 4.443412835 -0.181506 172 67 SH16886 16886 YGL189C_7_148970_148233_INTRON_1_368 intron 30.80792 198.823978 30.80792 169.016058 99.911989 1.999617605 -0.03749 172 68 SH3480 3480 Tyr1 5' flank 28.903742 175.395363 102.1495525 2.009236468 -0.1944 172 69 SH15657 15657 YBR189W_2_604466_605466_INTRON_8_420 intron 50.432146 260.504919 50.432146 211.072773 130.7524595 2.116449867 -0.017339 172 70 SH2649 2649 Pro4 5' flank 36.766018 178.507246 107.636632 2.0319601 0.147689 172 71 SH6492 6492 snR46 5' 28.979531 154.211939 91.595735 1.961875252 -0.08172 172 72 SH14605 14605 MT 21S rRNA Sce1 endonuc 34.877796 207.885917 34.877796 174.008121 104.4429585 2.018879165 0.127606 172 73 SH1944 1944 Lys2 5' flank 29.058271 152.207713 90.632992 1.957286317 -0.065491 172 74 SH18506 18506 YMR194W_13_651144_651909_INTRON_17_479 intron 42.884429 235.326298 42.884429 193.441869 118.163149 2.072482056 0.074336 172 75 SH3552 3552 Tyr2 tRNA-exon/intron 31 50 39.067414 186.539108 112.803261 2.052321655 0.097242 172 76 SH1861 1861 Leu9 tRNA-intron/exon 46 63 32.285155 174.16151 103.2233325 2.013777876 0.019595 172 77 SH18099 18099 YLR367W_12_855877_857316_INTRON_698_1180 intron 94.323787 370.939367 94.323787 277.61558 185.9696835 2.269442152 -0.043277 172 78 SH2041 2041 Lys3 3' flank 30.544346 192.194978 111.369662 2.046766902 -0.199072 172 79 SH20691 20691 YIL133C spliced 95.960193 265.434791 180.697492 2.256952125 0.059851 172 80 SH19369 19369 YPR028W_16_623522_624197_INTRON_52_184 intron/exon 27.698944 194.06433 27.698944 167.365386 97.532165 1.989147865 -0.241821 172 81 SH14219 14219 MT ATP9 ATP9 29.712918 183.916992 29.712918 155.204074 92.458496 1.965946825 -0.035049 172 82 SH6009 6009 snR37 5' 27.681788 143.570483 85.6261355 1.932606344 -0.121649 172 83 SH14800 14800 "MT tRNAs (Lys, Arg1, Gly)" intergenic 31.602367 178.170941 31.602367 147.568574 89.5854705 1.952237579 0.133761 172 84 SH13680 13680 MT ORF 5 (hypothetical) 5' 29.503706 179.69776 29.503706 151.194054 90.34888 1.955922773 -0.028507 172 85 SH14294 14294 MT VAR1 includes 5’ processing site VAR1 33.346115 200.494616 33.346115 168.148501 100.747308 2.00323345 0.115737 172 86 SH5598 5598 snR34 5' 37.157675 160.541948 98.8498115 1.994975845 0.339378 172 87 SH10344 10344 RUF7 RUF7 331 350 29.148601 157.856329 93.502465 1.97082306 -0.088569 172 88 SH6360 6360 snR43 snR43 41 53 101.812183 259.41835 180.6152665 2.256754456 0.160637 172 89 SH11088 11088 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2326 2342 79.97306 205.572404 142.772732 2.15464527 0.398733 172 90 SH13734 13734 MT COB Exon1 30.829586 174.840448 30.829586 145.010862 87.920224 1.944088786 0.096546 172 91 SH11099 11099 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2381 2396 42.434789 178.430236 110.4325125 2.043096953 0.25253 172 92 SH8749 8749 LSR1 / U2 RNA U2 386 400 32.648189 166.072402 99.3602955 1.997212874 0.088818 172 93 SH18792 18792 YNL301C_14_64561_63569_INTRON_113_544 intron 28.740311 193.17027 28.740311 165.429959 97.085135 1.987152739 -0.155807 172 94 SH1693 1693 Leu6 tRNA 31 43 42.318992 180.938081 111.6285365 2.047775231 0.219076 172 95 SH12003 12003 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6901 6921 30.718499 165.30993 98.0142145 1.991289064 -0.020398 172 96 SH19598 19598 AEP2/ATP13 2.1 28.868069 154.25353 91.5607995 1.961709576 -0.089936 172 97 SH3385 3385 Thr4 tRNA 11 25 54.523095 196.686889 125.604992 2.0990069 0.191432 172 98 SH13894 13894 MT COB intronic 115.993273 428.144572 115.993273 313.151299 214.572286 2.331573628 -0.067294 172 99 SH484 484 Asp2 5' flank 41.347181 166.764272 104.0557265 2.017265986 0.381422 172 100 SH13863 13863 MT COB cytbi2/intronic 27.648082 174.891057 27.648082 148.242975 87.9455285 1.944213763 -0.149174 172 101 SH12964 12964 MT COX1 COX1ai2 27.853975 196.885686 27.853975 170.031711 98.942843 1.995384385 -0.243042 172 102 SH3102 3102 Ser4 5' flank 32.101842 148.134698 90.11827 1.954812846 0.163203 172 103 SH15622 15622 YBR181C_2_592732_591670_INTRON_7_358 intron 34.324076 214.98815 34.324076 181.664074 107.994075 2.033399929 0.035778 172 104 SH11574 11574 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4756 4773 127.636855 307.420094 217.5284745 2.337516114 0.064386 173 2 SH16111 16111 YDR064W_4_579453_580447_INTRON_22_560 intron 27.917187 175.954768 27.917187 149.037581 88.477384 1.946832273 -0.13294 173 3 SH16933 16933 YGR027C_7_534779_534126_INTRON_1_312 5' exon 33.702771 227.022035 33.702771 194.319264 114.0110175 2.056946822 -0.099744 173 4 SH4404 4404 telomerase RNA telomerase 1056 1072 29.388954 156.620465 93.0047095 1.968504941 -0.06516 173 5 SH14697 14697 MT tRNA thr2 5' 31.047128 182.914757 31.047128 152.867629 91.9573785 1.963586582 0.068395 173 6 SH9755 9755 RUF4 RUF4 551 563 32.652833 178.007469 105.330151 2.022552707 0.010295 173 7 SH11489 11489 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4331 4348 266.074046 497.823056 381.948551 2.582004867 0.024078 173 8 SH12842 12842 MT COX1 COX1ai1 30.05448 194.869539 30.05448 165.815059 97.9347695 1.990936906 -0.064901 173 9 SH4942 4942 snR9 snR9 116 133 41.063691 161.861194 101.4624425 2.006305313 0.441548 173 10 SH14007 14007 MT COB intronic 27.642354 172.037421 27.642354 145.395067 86.5187105 1.937110038 -0.134493 173 11 SH5167 5167 snR13 5' - 7 -9 7 181.508965 364.093879 272.801422 2.43584663 0.129515 173 12 SH2312 2312 Phe2 3' flank 34.647152 159.192198 96.919675 1.986411949 0.242897 173 13 SH9319 9319 RUF1 RUF1 171 190 30.820809 127.436682 79.1287455 1.898334281 0.197475 173 14 SH5579 5579 snR33 181-183 + 3' 181 28.880414 164.625038 96.752726 1.98566321 -0.141763 173 15 SH18136 18136 YLR406C_12_931752_931062_INTRON_58_406 intron 37.890594 213.143591 37.890594 176.252997 107.0717955 2.029675085 0.199134 173 16 SH5528 5528 snR33 5' 28.70211 207.927181 118.3146455 2.073038507 -0.406359 173 17 SH9334 9334 RUF1 RUF1 246 263 25.013536 127.477903 76.2457195 1.882215467 -0.233789 173 18 SH9066 9066 snR14 / U4 RNA 5' 26.763604 131.313133 79.0383685 1.897837967 -0.119481 173 19 SH14671 14671 MT 21S rRNA 21S rRNA4 28.532509 178.138713 28.532509 150.606204 89.5693565 1.952159454 -0.095183 173 20 SH6681 6681 snR49 5' 28.531813 165.75537 97.1435915 1.987414156 -0.172509 173 21 SH16306 16306 YDR450W_4_1359912_1360787_INTRON_48_482 intron 32.178737 187.510755 32.178737 156.332018 94.2553775 1.974306137 0.123152 173 22 SH21245 21245 YPL031C spliced 78.669182 192.72515 135.697166 2.132570778 0.515834 173 23 SH17903 17903 YLR061W_12_263195_263949_INTRON_13_401 intron 26.919562 199.747884 26.919562 173.828322 100.373942 2.001620981 -0.331746 173 24 SH5540 5540 snR33 5' - 8 -14 8 30.658623 180.855608 105.7571155 2.024309597 -0.11536 173 25 SH367 367 Asn1 5' flank 30.765205 171.194718 100.9799615 2.004235201 -0.053097 173 26 SH12336 12336 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.52754 223.544678 34.52754 190.017138 112.272339 2.050272771 -0.033002 173 27 SH3747 3747 Val4 5' flank 33.690395 173.91209 103.8012425 2.016202552 0.087044 173 28 SH15033 15033 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 30.98832 208.08101 30.98832 178.09269 104.540505 2.019284594 -0.079723 173 29 SH14627 14627 MT 21S rRNA Sce1 endonuc 32.877783 205.103417 32.877783 173.225634 103.0517085 2.013055196 0.059072 173 30 SH17402 17402 YIL069C_9_232366_231550_INTRON_4_412 intron 31.071073 171.565767 31.071073 141.494694 86.2828835 1.93592465 0.132624 173 31 SH6902 6902 snR56 3' 32.960908 163.726197 98.3435525 1.992745892 0.121095 173 32 SH11943 11943 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6601 6619 731.878292 854.472046 793.175169 2.89936911 0.380161 173 33 SH11311 11311 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2/25S 3441 3459 266.509905 609.196718 437.8533115 2.641328639 -0.314116 173 34 SH4841 4841 snR8 5' 142.837007 359.514314 251.1756605 2.399977553 -0.107095 173 35 SH5908 5908 snR36 5' - 11 -4 11 93.51071 282.569266 188.039988 2.274250215 -0.085594 173 36 SH20576 20576 YHR012W spliced 29.696027 174.549052 102.1225395 2.009121606 -0.138934 173 37 SH5102 5102 snR11 snR11 111 127 145.750522 411.068155 278.4093385 2.444683798 -0.328243 173 38 SH21798 21798 copy of SH14863 28.145988 165.936337 97.0411625 1.98695599 -0.201648 173 39 SH5112 5112 snR11 snR11 161 183 30.226102 133.466079 81.8460905 1.91299794 0.120414 173 40 SH10891 10891 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1341 1358 23664.23293 32336.59587 28000.4144 4.447164459 -0.874039 173 41 SH20694 20694 YIL148W spliced 34.382033 175.570724 104.9763785 2.021091586 0.09537 173 42 SH2474 2474 Phe5 3' flank 30.611969 166.234703 98.423336 1.993098081 -0.03256 173 43 SH16663 16663 YFR032C-A_6_223758_223245_INTRON_1_331 intron 113.130697 448.673073 113.130697 336.542376 224.8365365 2.351866887 -0.227371 173 44 SH2581 2581 Pro2 3' flank 28.71871 141.699617 85.2091635 1.930486302 -0.033978 173 45 SH5956 5956 snR36 snR36 236 254 30.631895 158.234262 94.4330785 1.975124148 0.012501 173 46 SH9947 9947 RUF5-1 RUF5-1 541 556 32.542442 168.142948 100.342695 2.001485761 0.070165 173 47 SH2282 2282 Phe2 tRNA 6 22 307.30589 478.77525 393.04057 2.594437381 0.262476 173 48 SH4656 4656 snR3 3' 26.775739 106.23267 66.5042045 1.822849103 0.058101 173 49 SH10404 10404 RUF8 5' 44.313683 155.853727 100.083705 2.000363374 0.577808 173 50 SH19297 19297 YPL198W_16_173151_174701_INTRON_12_420 5' exon 30.828012 226.642089 30.828012 196.814077 113.8210445 2.056222567 -0.228074 173 51 SH3758 3758 Val4 tRNA 16 30 30.960212 163.228708 97.09446 1.987194451 0.007127 173 52 SH11648 11648 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5126 5144 31.090564 169.617923 100.3542435 2.001535741 -0.024029 173 53 SH14731 14731 MT tRNA cys; tRNA his tRNA his 29.226118 204.219686 29.226118 175.993568 102.609843 2.011189023 -0.177125 173 54 SH5493 5493 snR32 snR32 126 138 37.174418 169.276637 103.2255275 2.013787111 0.250518 173 55 SH16061 16061 YDL219W_4_65243_65766_INTRON_66_136 intron 31.248285 187.051445 31.248285 156.80316 94.0257225 1.973246679 0.061207 173 56 SH6192 6192 snR40 snR40 21 35 35.124976 179.117876 107.121426 2.029876345 0.087227 173 57 SH9297 9297 RUF1 RUF1 61 79 29.112682 139.372337 84.2425095 1.925531296 0.007623 173 58 SH5281 5281 snR30 snR30 256 270 38.755945 174.481874 106.6189095 2.027834236 0.237106 173 59 SH21562 21562 copy of SH4992 32.739093 177.144465 104.941779 2.020948422 0.021656 173 60 SH13397 13397 MT COX1 intronic 28.740765 191.228511 28.740765 163.487746 96.1142555 1.982787806 -0.146207 173 61 SH3131 3131 Ser4 tRNA 61 77 55.802317 180.628927 118.215622 2.072674872 0.394565 173 62 SH6701 6701 snR49 snR49 31 47 73.261561 224.668219 148.96489 2.17308392 0.143435 173 63 SH21753 21753 copy of SH12974 27.700963 154.940889 91.320926 1.960570307 -0.179588 173 64 SH543 543 Cys1 tRNA 16 28 38.407327 181.394829 109.901078 2.041001952 0.146091 173 65 SH7698 7698 snoRNA cluster1 intergenic 26.855419 145.036392 26.855419 119.180973 73.018196 1.863431099 -0.031913 173 66 SH15464 15464 YBL087C_2_60732_59815_INTRON_43_546 intron 30.814422 208.754085 30.814422 178.939663 104.8770425 2.020680432 -0.095064 173 67 SH4223 4223 telomerase RNA telomerase 151 165 56.317489 211.989947 134.153718 2.127602713 0.051758 173 68 SH14525 14525 MT 21S rRNA 21S rRNA3 28.981192 201.06888 28.981192 173.087688 101.03444 2.004469439 -0.175941 173 69 SH20927 20927 YLR367W spliced 29.009618 160.251082 94.63035 1.976030446 -0.110685 173 70 SH18546 18546 YMR230W_13_732413_733140_INTRON_53_462 intron 30.001721 193.284403 30.001721 164.282682 97.1422015 1.987407942 -0.061026 173 71 SH3306 3306 Thr2 3' flank 27.078751 144.759384 85.9190675 1.934089555 -0.174463 173 72 SH4096 4096 SRP RNA SRP RNA 371 383 40.802717 166.113358 103.4580375 2.014764236 0.380561 173 73 SH6385 6385 snR43 snR43 166 185 29.069972 136.276704 82.673338 1.917365473 0.022036 173 74 SH12924 12924 MT COX1 COX1ai2 29.111769 149.527694 29.111769 121.415925 75.263847 1.876586413 0.118425 173 75 SH13094 13094 MT COX1 COX1ai3 33.105158 225.20081 33.105158 193.095652 113.100405 2.05346416 -0.110516 173 76 SH5480 5480 snR32 snR32 61 77 37.142436 187.365633 112.2540345 2.050201959 0.051865 173 77 SH21070 21070 YMR225C spliced 65.076706 230.821676 147.949191 2.170112595 -0.01222 173 78 SH5518 5518 snR32 3' 29.43099 171.3348 100.382895 2.001659716 -0.136809 173 79 SH5879 5879 snR35 3' 29.506681 156.60614 93.0564105 1.968746296 -0.056789 173 80 SH291 291 Arg4 51-63 51 63 1335.710868 1179.250057 1257.480463 3.099501246 0.631434 173 81 SH16962 16962 YGR034W_7_555923_556666_INTRON_20_496 5' exon 27.580389 180.096952 27.580389 153.516563 90.548476 1.956881145 -0.181578 173 82 SH6633 6633 snR48 5' - 8 -9 8 29.550318 154.449287 91.9998025 1.963786895 -0.042487 173 83 SH20263 20263 YDR397C spliced 33.473426 188.060985 110.7672055 2.044411199 -0.052682 173 84 SH21240 21240 YOR312C spliced 49.297918 201.309905 125.3039115 2.097964628 0.0715 173 85 SH15847 15847 YDL075W_4_322225_322987_INTRON_58_478 intron 37.248361 231.788815 37.248361 195.540454 116.3944075 2.065932114 -0.039129 173 86 SH16445 16445 YER074W_5_306319_307192_INTRON_4_469 intron 29.248826 170.033434 29.248826 141.784608 85.516717 1.93205102 0.004076 173 87 SH12915 12915 MT COX1 COX1ai2 448.9358 1033.522761 448.9358 585.586961 517.2613805 2.713710055 0.387307 173 88 SH16818 16818 YGL178W_7_167356_170575_INTRON_4_643 intron 31.072161 204.627188 31.072161 174.555027 102.813594 2.012050541 -0.054287 173 89 SH10824 10824 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1006 1027 39.842611 162.844411 101.343511 2.005795946 0.398925 173 90 SH5004 5004 snR10 snR10 51 63 32.928892 177.709007 105.3189495 2.022506519 0.023212 173 91 SH6118 6118 snR39B 5' 28.981835 150.969706 89.9757705 1.954125574 -0.064342 173 92 SH13676 13676 MT ATP6 3' 31.878757 196.435647 31.878757 165.55689 98.7178235 1.994395572 0.047393 173 93 SH8129 8129 snoRNA cluster 3; snR41 27.9612 182.957964 27.9612 155.996764 91.978982 1.963688599 -0.165279 173 94 SH13401 13401 MT COX1 intronic 38.702105 232.483152 38.702105 194.781047 116.741576 2.067225552 -0.003567 173 95 SH20824 20824 YKR057W spliced 28.98033 137.02654 83.003435 1.919096066 0.011255 173 96 SH10362 10362 RUF7 RUF7 421 437 34.94673 163.440673 99.1937015 1.996484097 0.232232 173 97 SH9416 9416 RUF2 5' 60.829648 245.024885 152.9272665 2.184484926 -0.190858 173 98 SH14283 14283 MT VAR1 includes 5’ processing site VAR1 29.385681 181.998595 29.385681 153.612914 91.4992975 1.96141776 -0.049683 173 99 SH13526 13526 MT COX1 intronic 27.607517 143.915738 27.607517 117.308221 72.457869 1.860085557 0.037943 173 100 SH2491 2491 Pro1 5' flank 29.835949 164.606089 97.221019 1.987760169 -0.074118 173 101 SH5443 5443 snR31 3' 30.062391 178.737311 104.399851 2.018699879 -0.140103 173 102 SH8427 8427 snoRNA cluster 5 intergenic 28.2177 202.894437 28.2177 175.676737 101.9472185 2.008375381 -0.242575 173 103 SH11201 11201 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2891 2909 34.554968 183.874402 109.214685 2.038281038 0.023402 173 104 SH18544 18544 YMR230W_13_732413_733140_INTRON_53_462 intron 30.542498 193.654098 30.542498 164.1116 97.327049 1.988233556 -0.023747 174 2 SH1613 1613 Leu5 5' flank 29.951835 178.543612 104.2477235 2.01806658 -0.145889 174 3 SH975 975 Gly1 3' flank 29.678591 169.300314 99.4894525 1.997777041 -0.109011 174 4 SH7987 7987 snoRNA cluster 2 snR57 29.384575 180.466508 29.384575 152.081933 90.733254 1.957766486 -0.041647 174 5 SH12859 12859 MT COX1 COX1ai1 29.074567 181.87773 29.074567 153.803163 91.438865 1.961130827 -0.072775 174 6 SH8371 8371 snoRNA cluster 5 5' 34.582029 208.698304 34.582029 175.116275 104.849152 2.020564922 0.106692 174 7 SH21528 21528 copy of SH3563 30.355764 157.398311 93.8770375 1.972559376 -0.002 174 8 SH9173 9173 snR7 U5 RNA U5 136 150 37.629031 187.946324 112.7876775 2.052261654 0.054334 174 9 SH21265 21265 YPL081W spliced 31.608035 203.00464 117.3063375 2.069321476 -0.2504 174 10 SH6965 6965 snR60 5' 33.193404 164.186097 98.6897505 1.994272051 0.131385 174 11 SH7043 7043 snR62 snR62 6 27 34.801214 155.91159 95.356402 1.979349856 0.272348 174 12 SH5946 5946 snR36 snR36 186 208 29.08419 185.672583 107.3783865 2.030916874 -0.240619 174 13 SH15078 15078 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 33.532847 193.717556 33.532847 161.184709 97.358778 1.988375114 0.169149 174 14 SH12828 12828 MT COX1 COX1ai1 32.508565 203.095209 32.508565 171.586644 102.0476045 2.008802814 0.047619 174 15 SH2982 2982 Ser1 3' flank 28.784292 156.657343 92.7208175 1.967177252 -0.108494 174 16 SH2274 2274 Phe2 5' flank 32.349389 190.67337 111.5113795 2.047319188 -0.116879 174 17 SH13125 13125 MT COX1 COX1ai3 30.474946 182.07358 30.474946 152.598634 91.53679 1.961595679 0.031219 174 18 SH13978 13978 MT COB intronic 30.42969 207.52204 30.42969 178.09235 104.26102 2.018121969 -0.113728 174 19 SH17837 17837 YKR094C_11_618384_617630_INTRON_9_376 intron 30.40606 205.495418 30.40606 176.089358 103.247709 2.013880424 -0.103689 174 20 SH17899 17899 YLR061W_12_263195_263949_INTRON_13_401 exon/intron 34.028792 226.429765 34.028792 193.400973 113.7148825 2.055817307 -0.080218 174 21 SH11374 11374 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3756 3774 61.337654 229.083574 145.210614 2.161998362 -0.04482 174 22 SH1126 1126 Gly4 3' flank 28.704366 161.824375 95.2643705 1.978930502 -0.140552 174 23 SH4518 4518 U3b (snR17b) U3b 146 163 54.322658 233.896106 144.109382 2.158692256 -0.184731 174 24 SH14986 14986 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.227723 149.594125 25.227723 125.366402 75.2970625 1.876778034 -0.202359 174 25 SH9418 9418 RUF2 5' 32.607551 175.403585 104.005568 2.01705659 0.030949 174 26 SH4708 4708 snR4 snR4 76 92 34.512248 167.529068 101.020658 2.004410193 0.179015 174 27 SH18351 18351 YML124C_13_23684_22049_INTRON_26_323 intron/exon 32.726579 204.442169 32.726579 172.71559 102.7210845 2.011659596 0.053451 174 28 SH8988 8988 snR17a / U3a U3a 226 242 36.43712 172.827949 104.6325345 2.019666745 0.191485 174 29 SH19435 19435 YPR132W_16_794960_795762_INTRON_66_430 3' exon 40.145045 217.233721 40.145045 178.088676 109.1168605 2.037891862 0.217459 174 30 SH15352 15352 YBL026W_2_170585_171000_INTRON_55_182 5' exon 32.79275 208.393427 32.79275 176.600677 104.6967135 2.019933049 0.028806 174 31 SH8123 8123 snoRNA cluster 3; snR41 32.813622 198.570535 32.813622 166.756913 99.7852675 1.999066426 0.094088 174 32 SH17274 17274 YHR141C_8_382752_381991_INTRON_5_445 5' exon 36.538214 208.687409 36.538214 173.149195 104.8437045 2.020542358 0.19167 174 33 SH20111 20111 YDL064W spliced 123.403164 345.283124 234.343144 2.369852252 -0.185749 174 34 SH15739 15739 YCR028C-A_3_173432_172942_INTRON_243_325 exon/intron 68.329479 301.458121 68.329479 234.128642 151.2290605 2.179635254 0.000146 174 35 SH255 255 Arg3 3' flank 117.705007 324.271005 220.988006 2.344368703 -0.117663 174 36 SH21768 21768 copy of SH13603 31.387997 147.089324 89.2386605 1.950553043 0.122271 174 37 SH15889 15889 YDL082W_4_308423_309387_INTRON_5_369 intron 31.566543 199.366971 31.566543 168.800428 100.1834855 2.000796137 0.009282 174 38 SH10267 10267 RUF7 5' 184.168981 363.920993 274.044987 2.437821862 0.146337 174 39 SH5635 5635 snR34 snR34 96 113 28.176425 159.331925 93.754175 1.971990617 -0.166503 174 40 SH20437 20437 YGL076C spliced 322.770732 653.944903 488.3578175 2.688738144 -0.200414 174 41 SH16397 16397 YER056C-A_5_270183_269421_INTRON_38_434 5' exon 49.661742 264.382517 49.661742 215.720775 132.6912585 2.122842313 -0.075797 174 42 SH13910 13910 MT COB Cytbi3 28.588754 192.197918 28.588754 164.609164 96.598959 1.984972446 -0.16275 174 43 SH1007 1007 Gly2 tRNA 26 42 34.435328 177.261508 105.848418 2.024684371 0.081053 174 44 SH9368 9368 RUF1 RUF1 416 433 32.520565 149.98741 91.2539875 1.960251851 0.180028 174 45 SH20060 20060 YBR255C-A spliced 32.510831 199.076839 115.793835 2.063685438 -0.183694 174 46 SH1972 1972 Lys2 tRNA 61 73 55.73229 217.308671 136.5204805 2.135197808 -0.008865 174 47 SH14416 14416 MT 21S rRNA 21S rRNA3 36.368658 221.737904 36.368658 186.369246 111.368952 2.046764133 0.048583 174 48 SH16764 16764 YGL087C_7_346902_346404_INTRON_12_96 3' exon 30.616241 191.69358 30.616241 162.077339 96.34679 1.98383725 -0.007999 174 49 SH18637 18637 YNL096C_14_444312_443395_INTRON_145_489 intron 34.578346 192.914929 34.578346 159.336583 96.9574645 1.98658125 0.23826 174 50 SH11275 11275 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3261 3278 38.612314 179.429911 109.0211125 2.037510609 0.173577 174 51 SH17132 17132 YHR010W_8_126513_127484_INTRON_32_592 intron 32.91862 232.355989 32.91862 200.437369 116.6779945 2.066988956 -0.180422 174 52 SH13569 13569 MT COX1 Exon 6 31.102013 203.330315 31.102013 173.228302 102.1651575 2.009302809 -0.04474 174 53 SH15850 15850 YDL075W_4_322225_322987_INTRON_58_478 intron 29.241387 179.384976 29.241387 151.143589 90.192488 1.955170367 -0.046771 174 54 SH7477 7477 snR71 snR71 1 20 60.982819 195.692073 128.337446 2.108353392 0.282268 174 55 SH12835 12835 MT COX1 COX1ai1 28.302476 157.213492 28.302476 129.911016 79.106746 1.89821352 0.004395 174 56 SH12058 12058 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7176 7191 37.102492 168.862529 102.9825105 2.012763475 0.252331 174 57 SH4611 4611 snR3 5' 30.087794 135.601907 82.8448505 1.918265519 0.098383 174 58 SH9056 9056 snR17a / U3a 3' 30.91914 165.737572 98.328356 1.992678778 -0.010852 174 59 SH5666 5666 snR34 snR34 251 268 32.714534 190.509394 111.611964 2.04771075 -0.101982 174 60 SH13499 13499 MT COX1 intronic 30.651397 207.367926 30.651397 177.716529 104.183963 2.017800873 -0.098011 174 61 SH9772 9772 RUF4 RUF4 636 653 30.580239 183.161688 106.8709635 2.028859725 -0.133019 174 62 SH16647 16647 YFR031C-A_6_221405_220494_INTRON_5_151 intron 93.697883 329.117257 93.697883 236.419374 165.0586285 2.217638232 0.261857 174 63 SH460 460 Asp1 3' flank 28.675171 139.289445 83.982308 1.924187806 -0.023804 174 64 SH4675 4675 snR4 5' 28.751327 135.377127 82.064227 1.914153883 0.003984 174 65 SH8726 8726 LSR1 / U2 RNA U2 271 285 130.972901 286.559511 208.766206 2.319660199 0.221982 174 66 SH4243 4243 telomerase RNA telomerase 251 267 34.796652 150.194204 92.495428 1.966120266 0.310061 174 67 SH13247 13247 MT COX1 COX1-ai4 29.023252 182.707392 29.023252 154.68414 91.853696 1.963096636 -0.081068 174 68 SH20135 20135 YDL083C spliced 29.079233 144.127634 86.6034335 1.93753511 -0.020944 174 69 SH11629 11629 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5031 5046 5388.972642 3493.443235 4441.207939 3.647501107 0.748452 174 70 SH3732 3732 Val3 3' flank 30.09886 193.015349 111.5571045 2.047497233 -0.22386 174 71 SH404 404 Asn1 3' flank 29.114619 156.935951 93.025285 1.968601009 -0.086253 174 72 SH17862 17862 YLL050C_12_40413_39803_INTRON_15_193 exon/intron 31.069172 196.913716 31.069172 166.844544 98.956858 1.995445897 -0.008566 174 73 SH18140 18140 YLR406C_12_931752_931062_INTRON_58_406 intron 33.031371 206.088255 33.031371 174.056884 103.5441275 2.015125473 0.061974 174 74 SH2277 2277 Phe2 5' flank - tRNA2 2 29.121807 161.610433 95.36612 1.979394114 -0.109517 174 75 SH1462 1462 Leu2 tRNA 81 97 6344.440432 6652.077024 6498.258728 3.812796999 -0.063729 174 76 SH16418 16418 YER056C-A_5_270183_269421_INTRON_38_434 intron 31.16408 189.809503 31.16408 159.645423 95.4047515 1.979570005 0.041054 174 77 SH12350 12350 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.144726 205.497702 37.144726 169.352976 103.248851 2.013885227 0.2488 174 78 SH21673 21673 copy of SH9623 28.326811 136.991162 82.6589865 1.917290076 -0.036581 174 79 SH17001 17001 YGR118W_7_726968_727725_INTRON_66_385 intron/exon 29.366339 181.239187 29.366339 152.872848 91.1195935 1.959611774 -0.047138 174 80 SH3882 3882 RNaseP 3' 31.382751 167.307112 99.3449315 1.997145715 0.007394 174 81 SH12107 12107 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7421 7436 131.553114 323.833526 227.69332 2.35735029 -0.000881 174 82 SH16725 16725 YGL033W_7_435621_436347_INTRON_56_125 intron 35.344465 219.484054 35.344465 185.139589 110.242027 2.04234719 0.038892 174 83 SH20609 20609 YHR079C-A spliced 33.318635 189.516451 111.417543 2.046953577 -0.071244 174 84 SH21452 21452 copy of SH378 31.284688 140.91604 86.100364 1.935004987 0.150162 174 85 SH8626 8626 snR19 / U1 RNA U1 626 640 1229.524643 1567.898067 1398.711355 3.145728101 0.071943 174 86 SH12353 12353 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.178944 213.990402 31.178944 183.811458 107.495201 2.031389076 -0.100371 174 87 SH14084 14084 MT COB Cytbi4 35.079931 192.559827 35.079931 158.479896 96.7799135 1.98578523 0.27066 174 88 SH14751 14751 MT ORF11; tRNA Leu; tRNA Gln ORF11 40.965417 244.521852 40.965417 204.556435 122.760926 2.089060156 -0.080808 174 89 SH11961 11961 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6691 6706 484.604486 753.411021 619.0077535 2.791696089 0.067802 174 90 SH18868 18868 YNR053C_14_723108_721117_INTRON_811_1341 intron 31.113192 184.879654 31.113192 154.766462 92.939827 1.96820186 0.062806 174 91 SH15273 15273 MT 9S rRNA 9S 29.147233 201.208912 29.147233 173.061679 101.104456 2.004770297 -0.165109 174 92 SH16072 16072 YDR005C_4_458099_456832_INTRON_7_86 3' exon 29.14405 197.683578 29.14405 169.539528 99.341789 1.997131977 -0.146734 174 93 SH13357 13357 MT COX1 intronic 29.144199 209.024112 29.144199 180.879913 105.012056 2.021239161 -0.210196 174 94 SH12748 12748 MT COX1 COX1ai1 31.122165 203.633574 31.122165 173.511409 102.316787 2.009946894 -0.045188 174 95 SH13503 13503 MT COX1 intronic 31.165379 227.303743 31.165379 197.138364 114.1518715 2.057483036 -0.217814 174 96 SH19642 19642 RNA14 2.2 33.225257 174.989576 104.1074165 2.017481669 0.059967 174 97 SH17841 17841 YKR094C_11_618384_617630_INTRON_9_376 intron 33.369889 190.121025 33.369889 157.751136 95.5605125 1.98027847 0.181919 174 98 SH13421 13421 MT COX1 intronic 29.576421 168.574171 29.576421 139.99775 84.7870855 1.928329707 0.037418 174 99 SH5265 5265 snR30 snR30 176 188 31.792307 181.667607 106.729957 2.028286334 -0.056044 174 100 SH2908 2908 Pro8 tRNA 61 77 162.251262 375.906327 269.0787945 2.429879473 -0.0507 174 101 SH12789 12789 MT COX1 COX1ai1 30.226734 186.978592 30.226734 157.751858 93.989296 1.973078397 -0.012658 174 102 SH8674 8674 LSR1 / U2 RNA U2 11 28 30.424359 166.674198 98.5492785 1.993653449 -0.046734 174 103 SH7652 7652 snoRNA cluster1 5' 30.58531 172.680255 30.58531 143.094945 86.8401275 1.938720452 0.090812 174 104 SH12801 12801 MT COX1 COX1ai1 41.162099 247.824833 41.162099 207.662734 124.4124165 2.094863726 -0.112375 175 2 SH7441 7441 snR69 3' 29.931127 199.249727 114.590427 2.059148338 -0.284197 175 3 SH6069 6069 snR37 snR37 261 279 33.681407 184.588427 109.134917 2.037963722 -0.013812 175 4 SH14703 14703 MT tRNA thr2 tRNA 29.368354 185.531462 29.368354 157.163108 93.265731 1.969722099 -0.069417 175 5 SH16937 16937 YGR027C_7_534779_534126_INTRON_1_312 intron 31.022674 213.356239 31.022674 183.333565 107.1781195 2.030106133 -0.107119 175 6 SH19323 19323 YPL218W_16_138697_139408_INTRON_29_167 5' exon 79.508243 316.241634 79.508243 237.733391 158.620817 2.200360182 0.101098 175 7 SH4430 4430 telomerase RNA telomerase 1186 1205 26.505137 130.316498 78.4108175 1.894375982 -0.133125 175 8 SH6429 6429 snR45 5' - 8 -9 8 34.750368 185.340503 110.0454355 2.041572033 0.016755 175 9 SH7547 7547 snR79 76-84 + 3' 76 29.699213 157.701859 93.700536 1.971742075 -0.04894 175 10 SH21920 21920 copy of SH20200 35.011921 195.743336 115.3776285 2.062121608 -0.085194 175 11 SH20273 20273 YDR447C spliced 49.560121 215.397336 132.4787285 2.122146151 -0.073907 175 12 SH16992 16992 YGR118W_7_726968_727725_INTRON_66_385 intron 659.646119 1864.736693 659.646119 1206.090574 932.8683465 2.969820357 -0.309578 175 13 SH20484 20484 YGL226C-A spliced 33.470626 181.87619 107.673408 2.032108459 0.003646 175 14 SH11736 11736 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5566 5586 32.453383 175.298843 103.876113 2.01651569 0.022697 175 15 SH17980 17980 YLR211C_12_564531_563792_INTRON_19_77 3' exon 42.391593 245.807442 42.391593 204.415849 123.403721 2.091328255 -0.058699 175 16 SH15827 15827 YDL064W_4_337486_338069_INTRON_39_148 3' exon 30.510443 187.014009 30.510443 157.503566 94.0070045 1.973160214 0.008006 175 17 SH10019 10019 RUF6 5' 390.239789 783.033146 586.6364675 2.768369057 -0.26511 175 18 SH7573 7573 snR189 5' 28.637892 144.496111 86.5670015 1.937352375 -0.055143 175 19 SH19821 19821 Negative Control 30.441395 164.463916 97.4526555 1.988793678 -0.032124 175 20 SH19564 19564 CBP1 2.2 30.460331 148.14373 89.3020305 1.950861334 0.054225 175 21 SH1421 1421 Leu1 3' flank 30.505513 181.143972 105.8247425 2.02458722 -0.126338 175 22 SH4032 4032 SRP RNA SRP RNA 51 70 26.941115 129.694262 78.3176885 1.893859861 -0.095604 175 23 SH16235 16235 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 30.65167 202.561747 30.65167 172.910077 101.7808735 2.007666174 -0.070138 175 24 SH11760 11760 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5686 5699 20057.79157 28132.12644 24094.959 4.381926192 -0.867236 175 25 SH14374 14374 MT ORF9 and ORF10 (hypothetical) ORF10 28.964867 169.009446 28.964867 141.044579 85.004723 1.929443056 -0.012392 175 26 SH10273 10273 RUF7 5' 29.006691 169.507649 99.25717 1.996761889 -0.156386 175 27 SH21074 21074 YMR230W spliced 30.862168 163.224398 97.043283 1.98696548 0.001224 175 28 SH6830 6830 snR52 snR52 56 75 32.704185 175.612542 104.1583635 2.017694148 0.035034 175 29 SH7387 7387 snR68 3' 31.78455 175.747911 103.7662305 2.01605604 -0.018831 175 30 SH8997 8997 snR17a / U3a U3a 271 288 41.893123 200.74202 121.3175715 2.083923708 -0.024353 175 31 SH2535 2535 Pro2 5' flank 30.872214 151.851987 91.3621005 1.960766076 0.062071 175 32 SH13798 13798 MT COB intronic 31.812917 212.964799 31.812917 182.151882 106.9823995 2.029312334 -0.05976 175 33 SH5721 5721 snR34 snR34 526 546 34.619607 188.229727 111.424667 2.046981345 -0.013863 175 34 SH15445 15445 YBL087C_2_60732_59815_INTRON_43_546 intron 34.700303 191.217883 34.700303 157.51758 96.1089415 1.982763794 0.256507 175 35 SH20295 20295 YDR500C spliced 32.966658 157.410626 95.188642 1.978585131 0.161388 175 36 SH6834 6834 snR52 snR52 76 92 44.292124 184.077104 114.184614 2.057607588 0.207119 175 37 SH21266 21266 YPL081W spliced 35.173374 172.075363 103.6243685 2.015461897 0.156563 175 38 SH21373 21373 Leu8_9 spliced 59.946689 223.128992 141.5378405 2.150872565 -0.009005 175 39 SH4756 4756 snR5 5' 29.952824 150.95077 90.451797 1.956417199 0.00415 175 40 SH16779 16779 YGL103W_7_310965_311925_INTRON_50_560 intron 32.045553 188.490508 32.045553 157.444955 94.745254 1.976557464 0.108191 175 41 SH8018 8018 snoRNA cluster 2 snR55 62.964875 261.990692 62.964875 200.025817 131.495346 2.118910382 0.259958 175 42 SH6518 6518 snR46 snR46 81 100 32.341441 141.083579 86.71251 1.938081758 0.218142 175 43 SH14125 14125 MT COB intron/exon5 28.566349 191.098135 28.566349 163.531786 96.0490675 1.982493153 -0.159057 175 44 SH1540 1540 Leu3 3' flank 40.165523 190.336905 115.251214 2.061645509 0.072005 175 45 SH7788 7788 snoRNA cluster1 intergenic/snR75 44.032513 206.833794 44.032513 163.801281 103.916897 2.01668617 0.464984 175 46 SH18837 18837 YNL302C_14_62942_61957_INTRON_21_571 intron 32.444596 203.566619 32.444596 172.122023 102.2833095 2.009804772 0.040772 175 47 SH5536 5536 snR33 5' 28.606228 123.62501 76.115619 1.881473784 0.067454 175 48 SH11289 11289 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3331 3344 44.121462 207.783996 125.952729 2.100207582 -0.070215 175 49 SH16769 16769 YGL103W_7_310965_311925_INTRON_50_560 intron 3005.99821 6361.675195 3005.99821 3356.676985 3181.337598 3.502609758 0.051545 175 50 SH17127 17127 YHR010W_8_126513_127484_INTRON_32_592 intron 30.806852 246.630554 30.806852 216.823702 123.815277 2.092774234 -0.398475 175 51 SH2774 2774 Pro6 5' flank 30.957774 172.644859 101.8013165 2.007753394 -0.050002 175 52 SH12910 12910 MT COX1 COX1ai2 31.104231 187.845503 31.104231 157.741272 94.4227515 1.975076652 0.046785 175 53 SH1659 1659 Leu5 3' flank 27.280405 140.321428 83.8009165 1.923248768 -0.134572 175 54 SH6073 6073 snR37 snR37 281 299 29.30562 145.194662 87.250141 1.940766137 -0.010359 175 55 SH18547 18547 YMR230W_13_732413_733140_INTRON_53_462 intron 29.299 181.133538 29.299 152.834538 91.066769 1.959359928 -0.051699 175 56 SH16374 16374 YER003C_5_159117_157735_INTRON_32_124 intron 27.261945 144.941961 27.261945 118.680016 72.9709805 1.863150182 0.002408 175 57 SH15841 15841 YDL075W_4_322225_322987_INTRON_58_478 intron 31.071992 209.986834 31.071992 179.914842 105.493417 2.02322536 -0.085025 175 58 SH6120 6120 snR39B 5' 32.870375 176.082165 104.47627 2.019017659 0.0366 175 59 SH19034 19034 YOR234C_15_779404_778554_INTRON_20_546 intron 29.794739 213.002726 29.794739 184.207987 107.001363 2.02938931 -0.187452 175 60 SH15318 15318 YAL003W_1_142172_143158_INTRON_81_446 intron 69.536463 294.582407 69.536463 226.045944 147.7912035 2.169648586 0.086477 175 61 SH21003 21003 YML094W spliced 38.314087 160.983477 99.648782 1.998471995 0.371457 175 62 SH12825 12825 MT COX1 COX1ai1 28.646928 198.278479 28.646928 170.631551 99.6392395 1.998430404 -0.18764 175 63 SH3564 3564 Tyr2 3' flank 32.569174 144.084565 88.3268695 1.946092838 0.215654 175 64 SH9975 9975 RUF5-1 RUF5-1 681 700 28.794704 159.472148 94.133426 1.973743865 -0.12217 175 65 SH15272 15272 MT 9S rRNA 9S 28.910322 197.451647 28.910322 169.541325 99.2258235 1.996624712 -0.163453 175 66 SH17087 17087 YHL001W_8_104270_105084_INTRON_130_527 intron 32.937738 198.032082 32.937738 166.094344 99.516041 1.99789309 0.10519 175 67 SH15703 15703 YBR220C_2_663261_662457_INTRON_302_722 intron 31.083103 205.442223 31.083103 175.35912 103.2211115 2.013768531 -0.058298 175 68 SH14954 14954 MT tRNA Met 3' 29.187458 183.498 29.187458 155.310542 92.249 1.964961667 -0.072633 175 69 SH3122 3122 Ser4 tRNA 16 30 43.026276 191.906834 117.466555 2.069914232 0.094525 175 70 SH13078 13078 MT COX1 COX1ai3 45.010876 247.329097 45.010876 203.318221 124.1645485 2.093997614 -0.008649 175 71 SH8611 8611 snR19 / U1 RNA U1 551 569 29.214289 152.161209 90.687749 1.957548622 -0.054131 175 72 SH8758 8758 LSR1 / U2 RNA U2 431 447 86.561654 279.693058 183.127356 2.262753225 -0.13943 175 73 SH1647 1647 Leu5 101-115 + 3' flank 101 42.945423 184.678109 113.811766 2.056187162 0.181139 175 74 SH12397 12397 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.152905 174.55986 29.152905 146.406955 87.77993 1.94339523 -0.027843 175 75 SH17601 17601 YJL205C-A_10_50443_50139_INTRON_33_175 exon/intron 29.149621 178.504464 29.149621 150.354843 89.752232 1.953045258 -0.049056 175 76 SH8363 8363 snoRNA cluster4 3' 29.159714 202.403482 29.159714 174.243768 101.701741 2.007328388 -0.171225 175 77 SH12281 12281 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 46.913355 236.167048 46.913355 190.253693 118.583524 2.074024352 0.167084 175 78 SH11360 11360 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3686 3704 41.032137 166.973698 104.0029175 2.017045522 0.373278 175 79 SH17791 17791 YKL186C_11_93537_92746_INTRON_71_233 intron 29.233069 205.400589 29.233069 177.16752 103.2002945 2.013680937 -0.183435 175 80 SH9192 9192 snR7 U5 RNA 3' 27.279692 134.975861 81.1277765 1.909169573 -0.103 175 81 SH3935 3935 RNase MRP RNaseMRP 91 106 33.194517 170.234603 101.71456 2.007383125 0.094691 175 82 SH14932 14932 MT tRNA Asn tRNA 29.237394 175.818101 29.237394 147.580707 88.4090505 1.946496726 -0.027971 175 83 SH4312 4312 telomerase RNA telomerase 596 615 27.244969 171.743633 99.494301 1.997798205 -0.297036 175 84 SH8019 8019 snoRNA cluster 2 snR55 99.366704 378.96854 99.366704 280.601836 189.98427 2.278717644 -0.013116 175 85 SH6350 6350 snR43 5' - 7 -9 7 32.10868 177.075069 104.5918745 2.019497947 -0.007508 175 86 SH6214 6214 snR40 3' 29.151289 160.837012 94.9941505 1.977696863 -0.103531 175 87 SH16240 16240 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 31.125087 191.255843 31.125087 161.130756 96.1279215 1.982849552 0.030199 175 88 SH16321 16321 YDR471W_4_1401759_1402553_INTRON_32_415 intron 35.089247 212.898108 35.089247 178.808861 106.949054 2.029176947 0.088922 175 89 SH1252 1252 Ile2 5' flank 29.22269 176.016218 102.619454 2.0112297 -0.177475 175 90 SH13791 13791 MT COB intronic 29.262383 182.14355 29.262383 153.881167 91.571775 1.961761633 -0.059823 175 91 SH17492 17492 YJL041W_10_365480_368069_INTRON_2_119 5' exon 31.271159 216.993905 31.271159 186.722746 108.9969525 2.037414355 -0.122158 175 92 SH16556 16556 YER133W_5_432491_433954_INTRON_178_702 intron 27.350274 147.455482 27.350274 121.105208 74.227741 1.870566244 -0.007819 175 93 SH13523 13523 MT COX1 intronic 29.346143 186.115946 29.346143 157.769803 93.557973 1.971080804 -0.074108 175 94 SH17674 17674 YKL006C-A_11_430270_429836_INTRON_37_177 3' exon 29.371968 196.866808 29.371968 168.49484 98.933404 1.995342952 -0.12556 175 95 SH15214 15214 MT COX3 cox3 27.435056 145.716355 27.435056 119.281299 73.3581775 1.865448533 0.011166 175 96 SH8241 8241 snoRNA cluster 3; 3' 29.490961 173.939387 29.490961 145.448426 87.4696935 1.941857605 0.001558 175 97 SH5821 5821 snR35 snR35 291 307 59.653173 201.944269 130.798721 2.116603497 0.198661 175 98 SH16777 16777 YGL103W_7_310965_311925_INTRON_50_560 intron 33.779684 200.307712 33.779684 167.528028 100.653856 2.002830417 0.143642 175 99 SH13465 13465 MT COX1 intronic 42.098719 266.292203 42.098719 225.193484 133.6461015 2.125956295 -0.281067 175 100 SH17907 17907 YLR061W_12_263195_263949_INTRON_13_401 intron 30.163125 167.212187 30.163125 138.049062 84.1060935 1.924827462 0.089711 175 101 SH4819 4819 snR5 3' 28.318947 152.337225 90.328086 1.955822808 -0.119912 175 102 SH15100 15100 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 30.554549 186.195046 30.554549 156.640497 93.597523 1.971264356 0.015455 175 103 SH9478 9478 RUF2 RUF2 231 247 32.787322 146.786395 89.7868585 1.953212777 0.214458 175 104 SH17487 17487 YJL024C_10_396288_395627_INTRON_23_99 intron 32.908762 203.70771 32.908762 171.798948 102.353855 2.010104204 0.069235 176 2 SH18061 18061 YLR333C_12_796335_795573_INTRON_1_423 3' exon 31.935837 208.65327 31.935837 177.717433 104.826635 2.020471645 -0.021277 176 3 SH14489 14489 MT 21S rRNA 21S rRNA3 29.639767 199.744312 29.639767 171.104545 100.372156 2.001613253 -0.122229 176 4 SH16624 16624 YFL039C_6_54695_53260_INTRON_11_318 intron 65.299375 297.278357 65.299375 232.978982 149.1391785 2.173591747 -0.028562 176 5 SH9646 9646 RUF4 RUF4 6 21 32.977159 162.413778 97.6954685 1.98987442 0.130193 176 6 SH5421 5421 snR31 snR31 171 187 38.445644 155.838063 97.1418535 1.987406386 0.430379 176 7 SH9877 9877 RUF5-1 RUF5-1 191 206 34.169177 160.873302 97.5212395 1.989099213 0.206256 176 8 SH17262 17262 YHR101C_8_315970_314876_INTRON_111_197 intron/exon 29.996581 181.744235 29.996581 152.747654 91.3721175 1.96081369 -0.002406 176 9 SH16399 16399 YER056C-A_5_270183_269421_INTRON_38_434 exon/intron 31.55788 213.627063 31.55788 183.069183 107.3135315 2.030654487 -0.077879 176 10 SH6583 6583 snR47 snR47 21 36 42.428889 190.620557 116.524723 2.066418079 0.101502 176 11 SH17347 17347 YIL018W_9_316766_317930_INTRON_5_404 intron 34.697143 186.094526 34.697143 152.397383 93.547263 1.971031085 0.289912 176 12 SH6347 6347 snR43 5' 35.392439 179.375255 107.383847 2.030938958 0.093892 176 13 SH10018 10018 RUF6 5' 1920.103886 3073.218256 2496.661071 3.39735959 -0.398344 176 14 SH3961 3961 RNase MRP RNaseMRP 221 237 30.563853 145.408223 87.986038 1.944413762 0.076364 176 15 SH18611 18611 YNL069C_14_494998_493953_INTRON_29_477 intron 30.498017 222.707918 30.498017 193.209901 111.853959 2.04865136 -0.209778 176 16 SH12201 12201 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7891 7909 36.799608 172.89956 104.849584 2.020566712 0.202644 176 17 SH16437 16437 YER074W_5_306319_307192_INTRON_4_469 intron 31.33936 204.699719 31.33936 174.360359 102.8498595 2.012203703 -0.037147 176 18 SH13418 13418 MT COX1 intronic 28.621422 174.680324 28.621422 147.058902 87.840162 1.943693128 -0.070055 176 19 SH15176 15176 MT COX3 5' 28.63443 182.390802 28.63443 154.756372 91.695401 1.962347554 -0.109437 176 20 SH10208 10208 RUF6 RUF6 886 902 41.365012 202.856781 122.1108965 2.08675442 -0.055915 176 21 SH6320 6320 snR42 3' 28.721034 151.285517 90.0032755 1.954258315 -0.08482 176 22 SH8839 8839 LSR1 / U2 RNA U2 836 853 37.891513 199.976429 118.933971 2.075305919 -0.075872 176 23 SH14026 14026 MT COB Exon4 28.861791 171.984041 28.861791 144.12225 86.4920205 1.936976043 -0.036722 176 24 SH16035 16035 YDL191W_4_117665_118518_INTRON_4_494 intron 34.412526 205.696069 34.412526 172.283543 103.3480345 2.014302222 0.128326 176 25 SH11296 11296 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3366 3387 28.977063 148.345648 88.6613555 1.947734367 -0.050836 176 26 SH21125 21125 YNL130C spliced 38.175367 216.855744 127.5155555 2.105563167 -0.256573 176 27 SH4014 4014 SRP RNA 5' 27.179792 144.938424 86.059108 1.93479684 -0.167583 176 28 SH18555 18555 YMR230W_13_732413_733140_INTRON_53_462 3' exon 67.659861 311.414193 67.659861 244.754332 156.2070965 2.19370076 -0.098446 176 29 SH16063 16063 YDL219W_4_65243_65766_INTRON_66_136 3' exon 30.822141 175.770638 30.822141 145.948497 88.385319 1.946380134 0.090824 176 30 SH11697 11697 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5371 5389 12035.64365 11867.20428 11951.42397 4.077419653 -0.156371 176 31 SH16127 16127 YDR064W_4_579453_580447_INTRON_22_560 intron 39.988377 223.136427 39.988377 184.14805 112.0682135 2.049482449 0.141823 176 32 SH17950 17950 YLR128W_12_398531_399434_INTRON_4_97 3' exon 34.504818 216.933264 34.504818 183.428446 108.966632 2.037293528 0.025759 176 33 SH9696 9696 RUF4 RUF4 256 275 30.879384 167.040189 98.9597865 1.99545875 -0.021211 176 34 SH6588 6588 snR47 snR47 46 67 183.12287 451.951512 317.537191 2.501794599 -0.243071 176 35 SH9405 9405 RUF1 3' 31.05181 169.850903 100.4513565 2.001955806 -0.027756 176 36 SH2176 2176 Met2 tRNA 11 23 66.573863 221.088015 143.830939 2.157852316 0.095512 176 37 SH14503 14503 MT 21S rRNA 21S rRNA3 36.951821 239.6383 36.951821 203.686479 120.31915 2.080334755 -0.133674 176 38 SH17987 17987 YLR275W_12_694378_694800_INTRON_6_95 intron 29.673143 202.039258 29.673143 173.366115 101.519629 2.006550022 -0.133466 176 39 SH19246 19246 YPL129W_16_305297_306136_INTRON_10_114 5' exon 35.528797 192.904322 35.528797 158.375525 96.952161 1.986557494 0.295097 176 40 SH17463 17463 YIL148W_9_68708_69528_INTRON_9_442 intron 201.193228 652.082265 201.193228 451.889037 326.5411325 2.513937895 -0.136225 176 41 SH20354 20354 YER117W spliced 28.306337 146.800723 87.55353 1.942273661 -0.092 176 42 SH1182 1182 His1 3' flank 28.421836 155.143054 91.782445 1.962759623 -0.126924 176 43 SH14728 14728 MT tRNA cys; tRNA his intergenic 28.495096 181.541253 28.495096 154.046157 91.2706265 1.960331032 -0.115833 176 44 SH16678 16678 YGL030W_7_439087_439634_INTRON_4_233 5' exon 28.530067 188.751303 28.530067 161.221236 94.8756515 1.977154771 -0.150168 176 45 SH5606 5606 snR34 5' 28.540262 152.517214 90.528738 1.956786466 -0.104466 176 46 SH3289 3289 Thr2 tRNA 46 61 34.316716 148.667832 91.492274 1.961384422 0.294475 176 47 SH12682 12682 MT tRNA Trp tRNA 32.416084 195.290978 32.416084 163.874894 98.145489 1.991870343 0.089014 176 48 SH15362 15362 YBL027W_2_168385_169338_INTRON_3_386 5' exon 34.407199 206.431249 34.407199 173.02405 103.7156245 2.015844187 0.120903 176 49 SH5453 5453 snR32 5' 46.157568 187.76972 116.963644 2.06805089 0.186489 176 50 SH20668 20668 YIL069C spliced 32.729468 196.00663 114.368049 2.058304713 -0.149438 176 51 SH14490 14490 MT 21S rRNA 21S rRNA3 28.990722 204.157293 28.990722 176.166571 102.5786465 2.011056964 -0.193241 176 52 SH13875 13875 MT COB intronic 29.133739 231.571557 29.133739 203.437818 116.2857785 2.065526605 -0.351646 176 53 SH16704 16704 YGL031C_7_438393_437938_INTRON_1_456 intron 35.15983 223.315528 35.15983 189.155698 112.157764 2.049829343 -0.007654 176 54 SH20924 20924 YLR367W spliced 29.30705 165.924905 97.6159775 1.989520908 -0.117701 176 55 SH2764 2764 Pro6 5' flank 33.252522 168.393589 100.8230555 2.003559855 0.109003 176 56 SH9272 9272 RUF1 5' 29.235467 180.935886 105.0856765 2.021543524 -0.204665 176 57 SH6449 6449 snR45 snR45 91 105 56.676597 211.62843 134.1525135 2.127598814 0.060211 176 58 SH12687 12687 MT tRNA Trp 3' 32.878376 204.650063 32.878376 172.771687 102.8250315 2.012098851 0.061772 176 59 SH15653 15653 YBR189W_2_604466_605466_INTRON_8_420 intron 28.831356 200.677912 28.831356 172.846556 100.838956 2.003628341 -0.18477 176 60 SH8568 8568 snR19 / U1 RNA U1 336 352 38.411345 180.424928 109.4181365 2.039089314 0.157841 176 61 SH1764 1764 Leu7 3' flank 79.184769 228.305555 153.745162 2.186801458 0.178386 176 62 SH11625 11625 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5011 5024 51.927845 194.516395 123.22212 2.090688676 0.182291 176 63 SH15334 15334 YAL030W_1_87288_87754_INTRON_103_215 5' exon 115.124776 380.369651 115.124776 266.244875 190.6848255 2.280316134 0.230943 176 64 SH20082 20082 YCR097W spliced 28.844123 150.960258 89.9021905 1.953770274 -0.074176 176 65 SH6224 6224 snR42 5' 30.928207 184.918591 107.923399 2.033115615 -0.121566 176 66 SH15450 15450 YBL087C_2_60732_59815_INTRON_43_546 intron 29.106202 227.571228 29.106202 199.465026 114.285614 2.057991566 -0.319499 176 67 SH21881 21881 copy of SH18401 29.216357 154.759699 91.988028 1.963731309 -0.067701 176 68 SH663 663 Gln2 3' flank 31.267296 174.81795 103.042623 2.013016905 -0.044113 176 69 SH14213 14213 MT ATP9 5'/ATP9 29.333822 189.684926 29.333822 161.351104 95.342463 1.979286367 -0.093162 176 70 SH21393 21393 Pro2_7 spliced 86.178873 205.183518 145.6811955 2.163403497 0.466871 176 71 SH5746 5746 snR35 5' 33.271282 172.202983 102.7371325 2.01172744 0.087329 176 72 SH16834 16834 YGL178W_7_167356_170575_INTRON_4_643 intron 35.204653 169.721139 35.204653 135.516486 85.3605695 1.931257304 0.426801 176 73 SH16743 16743 YGL076C_7_365994_364333_INTRON_565_1032 intron 29.240312 181.434304 29.240312 153.193992 91.217152 1.960076508 -0.057763 176 74 SH9163 9163 snR7 U5 RNA U5 86 102 29.198777 153.280419 91.239598 1.960183363 -0.06117 176 75 SH2853 2853 Pro7 tRNA 71 83 844.021423 1006.97314 925.4972815 2.966375147 0.295031 176 76 SH17054 17054 YGR214W_7_920570_921783_INTRON_91_545 intron 31.103897 198.709283 31.103897 168.605386 99.8546415 1.999368257 -0.017145 176 77 SH3171 3171 Ser5 5' flank 29.127678 128.46833 78.798004 1.896515217 0.072757 176 78 SH14070 14070 MT COB Cytbi4 29.122146 184.555163 29.122146 156.433017 92.7775815 1.967443047 -0.083116 176 79 SH5438 5438 snR31 3' 33.044758 194.139397 113.5920775 2.055348042 -0.121801 176 80 SH12238 12238 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.115181 175.142127 29.115181 147.026946 88.0710635 1.944833241 -0.033863 176 81 SH679 679 Gln3 5' flank 29.10513 164.380174 96.742652 1.985617989 -0.124472 176 82 SH11094 11094 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2356 2369 56.629166 222.618861 139.6240135 2.144960118 -0.048091 176 83 SH11313 11313 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3451 3468 36002.78556 31562.57052 33782.67804 4.528694074 -0.291014 176 84 SH3235 3235 Thr1 tRNA 31 48 64.462446 238.39233 151.427388 2.180204431 -0.086244 176 85 SH17448 17448 YIL148W_9_68708_69528_INTRON_9_442 intron 29.059528 180.704886 29.059528 152.645358 90.852443 1.95833661 -0.067728 176 86 SH14271 14271 MT VAR1 includes 5’ processing site VAR1 29.080843 193.906247 29.080843 165.825404 97.4531235 1.988795763 -0.133296 176 87 SH17286 17286 YHR141C_8_382752_381991_INTRON_5_445 intron 31.087932 167.27025 31.087932 137.182318 84.135125 1.924977344 0.158222 176 88 SH4803 4803 snR5 snR5 186 203 32.140953 171.807815 101.974384 2.008491091 0.025051 176 89 SH18751 18751 YNL162W_14_331319_332151_INTRON_5_516 intron 31.239703 186.854531 31.239703 156.614828 93.9272655 1.972791679 0.06161 176 90 SH4221 4221 telomerase RNA telomerase 141 155 31.324813 174.979475 103.152144 2.013478259 -0.041616 176 91 SH1767 1767 Leu7 3' flank 29.419925 172.776654 101.0982895 2.004743808 -0.146026 176 92 SH18461 18461 YMR143W_13_551927_552902_INTRON_25_568 intron 29.47902 193.074903 29.47902 164.595883 97.0374515 1.986939382 -0.099045 176 93 SH21190 21190 YOL120C spliced 29.525868 149.180471 89.3531695 1.951109962 -0.016088 176 94 SH15349 15349 YBL018C_2_186436_185960_INTRON_48_122 intron/exon 29.568589 185.847828 29.568589 157.279239 93.423914 1.970458058 -0.055914 176 95 SH12785 12785 MT COX1 COX1ai1 29.620382 196.816314 29.620382 168.195932 98.908157 1.99523211 -0.106644 176 96 SH1172 1172 His1 3' flank 29.695358 156.871828 93.283593 1.969805265 -0.044934 176 97 SH17654 17654 YJR145C_10_702761_701720_INTRON_15_270 3' exon 33.822153 219.6099 33.822153 186.787747 110.30495 2.042595002 -0.028803 176 98 SH16794 16794 YGL103W_7_310965_311925_INTRON_50_560 3' exon 48.161189 266.898861 48.161189 219.737672 133.9494305 2.126940871 -0.13744 176 99 SH3058 3058 Ser3 5' flank - tRNA3 3 32.151988 179.128427 105.6402075 2.023829246 -0.018815 176 100 SH6889 6889 snR56 76-88 + 3' 76 28.265024 122.24953 75.257277 1.8765485 0.052048 176 101 SH14886 14886 MT tRNA Ala 3' 28.437004 193.588737 28.437004 166.151733 97.2943685 1.988087704 -0.181351 176 102 SH8927 8927 snR17a / U3a 5' 29.626397 148.595303 89.11085 1.949930586 -0.00585 176 103 SH21075 21075 YMR230W spliced 30.797928 179.105718 104.951823 2.020989987 -0.097007 176 104 SH3010 3010 Ser2 tRNA 11 25 2785.511601 3442.622089 3114.066845 3.493327931 -0.08796 177 2 SH19250 19250 YPL129W_16_305297_306136_INTRON_10_114 intron 29.887501 161.269163 29.887501 132.381662 81.1345815 1.909206 0.103046 177 3 SH623 623 Gln2 5' flank 29.632518 174.065508 101.849013 2.007956825 -0.140117 177 4 SH8936 8936 snR17a / U3a 5' 29.355724 147.949886 88.652805 1.947692481 -0.021411 177 5 SH3241 3241 Thr1 61-73 + 3' flank 61 40.860017 170.243536 105.5517765 2.023465547 0.328066 177 6 SH10685 10685 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 311 326 32.631083 157.143666 94.8873745 1.97720843 0.143986 177 7 SH8721 8721 LSR1 / U2 RNA U2 246 265 30.348337 138.452752 84.4005445 1.926345248 0.100328 177 8 SH21543 21543 copy of SH4153 31.907365 162.228308 97.0678365 1.98707535 0.069705 177 9 SH1582 1582 Leu4 tRNA 81 97 6420.023095 7366.395417 6893.209256 3.838421462 -0.210694 177 10 SH14481 14481 MT 21S rRNA 21S rRNA3 34.971389 218.046955 34.971389 184.075566 109.5234775 2.039507225 0.035906 177 11 SH12959 12959 MT COX1 COX1ai2 32.828481 186.946751 32.828481 155.11827 93.9733755 1.973004827 0.168441 177 12 SH11783 11783 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5801 5814 2341.577161 1737.142663 2039.359912 3.309493878 0.756045 177 13 SH894 894 Glu3 5' flank - tRNA2 2 30.610265 165.377823 97.994044 1.99119968 -0.027413 177 14 SH10470 10470 RUF8 RUF8 276 295 41.394731 176.11966 108.7571955 2.036458 0.26336 177 15 SH20746 20746 YJL205C-A spliced 26.814845 140.874091 83.844468 1.923474413 -0.173793 177 16 SH21257 21257 YPL075W spliced 34.007941 172.035483 103.021712 2.012928763 0.11659 177 17 SH10958 10958 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1676 1694 1692.31266 1426.802674 1559.557667 3.193001438 0.637956 177 18 SH8242 8242 snoRNA cluster 3; 3' 30.390529 188.058009 30.390529 158.66748 94.5290045 1.975565084 -0.006131 177 19 SH5324 5324 snR30 snR30 471 483 806.954818 1304.724884 1055.839851 3.02359805 -0.1792 177 20 SH2563 2563 Pro2 tRNA-intron 51 67 85.137335 296.884979 191.011157 2.281058735 -0.270564 177 21 SH8026 8026 snoRNA cluster 2 snR55 28.726114 200.658916 28.726114 172.932802 100.829458 2.003587433 -0.192764 177 22 SH9987 9987 RUF5-1 RUF5-1 741 760 29.710128 179.259639 104.4848835 2.019053463 -0.165102 177 23 SH3776 3776 Val4 3' flank 30.698851 165.099036 97.8989435 1.990778005 -0.020297 177 24 SH19621 19621 RNA14 1.1 28.93787 146.487188 87.712529 1.943061633 -0.043862 177 25 SH8116 8116 snoRNA cluster 3; 5'/snR41 30.811057 168.155964 30.811057 138.344907 84.577982 1.927257319 0.132804 177 26 SH14598 14598 MT 21S rRNA Sce1 endonuc 28.99972 192.579068 28.99972 164.579348 96.789534 1.985828399 -0.132983 177 27 SH9294 9294 RUF1 RUF1 46 66 25.338544 114.433183 69.8858635 1.844389336 -0.117168 177 28 SH18053 18053 YLR333C_12_796335_795573_INTRON_1_423 intron 25.326478 173.205908 25.326478 148.87943 87.102954 1.940032884 -0.337043 177 29 SH1449 1449 Leu2 tRNA 16 28 28.969308 154.741723 91.8555155 1.963105239 -0.08523 177 30 SH14786 14786 MT ORF11; tRNA Leu; tRNA Gln 3' 30.791061 208.739259 30.791061 178.948198 104.8696295 2.020649734 -0.09653 177 31 SH15950 15950 YDL125C_4_239605_239018_INTRON_98_208 3' exon 28.967597 185.618835 28.967597 157.651238 93.3094175 1.969925478 -0.100443 177 32 SH4304 4304 telomerase RNA telomerase 556 574 28.992294 147.457235 88.2247645 1.945590508 -0.045048 177 33 SH4250 4250 telomerase RNA telomerase 286 305 29.037596 140.120346 84.578971 1.927262397 -0.001987 177 34 SH12861 12861 MT COX1 COX1ai1 30.94459 204.736655 30.94459 174.792065 102.8683275 2.012281679 -0.063357 177 35 SH17187 17187 YHR021C_8_148660_147862_INTRON_4_553 intron 29.198278 197.920798 29.198278 169.72252 99.460399 1.997650197 -0.14375 177 36 SH1869 1869 Leu9 86-101 + 3' flank 86 36.734083 171.337414 104.0357485 2.017182596 0.215825 177 37 SH10675 10675 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 261 279 31.325551 137.030546 84.1780485 1.925198853 0.175121 177 38 SH7689 7689 snoRNA cluster1 intergenic 29.632019 163.600763 29.632019 134.968744 82.3003815 1.915401848 0.069882 177 39 SH6932 6932 snR58 snR58 21 38 31.694756 165.556791 98.6257735 1.993990422 0.036572 177 40 SH2559 2559 Pro2 tRNA-exon/intron 31 45 42.318813 157.568147 99.94348 1.999754467 0.521393 177 41 SH1100 1100 Gly4 5' flank 28.242315 150.550319 89.396317 1.951319627 -0.116424 177 42 SH14669 14669 MT 21S rRNA 21S rRNA4 28.357766 164.93573 28.357766 137.577964 82.967865 1.918909915 -0.037611 177 43 SH762 762 Gln4 3' flank 32.266857 161.622855 96.944856 1.98652477 0.094448 177 44 SH8151 8151 snoRNA cluster 3; intergenic 32.313802 215.209027 32.313802 183.895225 108.1045135 2.033843827 -0.057119 177 45 SH18171 18171 YLR448W_12_1028848_1029762_INTRON_16_399 intron 30.413623 198.999168 30.413623 169.585545 99.999584 1.999998193 -0.064988 177 46 SH8462 8462 snoRNA cluster 5 snR128/3' 30.427278 193.944759 30.427278 164.517481 97.4723795 1.988881568 -0.033322 177 47 SH913 913 Glu3 3' flank 30.457039 142.117333 86.287186 1.935946306 0.087499 177 48 SH6362 6362 snR43 snR43 51 70 32.447025 151.120649 91.783837 1.962766209 0.169232 177 49 SH3598 3598 Val1 5' flank - tRNA5 5 37.396166 175.732987 106.5645765 2.027612863 0.194479 177 50 SH16806 16806 YGL137W_7_249872_252741_INTRON_19_218 intron 32.706281 180.122641 32.706281 148.41636 90.5613205 1.956942746 0.200376 177 51 SH8210 8210 snoRNA cluster 3; snR51 36.784764 237.919119 36.784764 202.134355 119.4595595 2.077220909 -0.12022 177 52 SH8705 8705 LSR1 / U2 RNA U2 166 181 31.078436 195.561749 113.3200925 2.05430692 -0.20761 177 53 SH2762 2762 Pro6 5' flank 29.232337 136.502957 82.867647 1.918385007 0.032473 177 54 SH17480 17480 YJL001W_10_434855_435618_INTRON_66_181 3' exon 31.269712 179.058791 31.269712 148.789079 90.0293955 1.954384334 0.105128 177 55 SH10705 10705 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 411 428 31.270108 173.178855 102.2244815 2.009554916 -0.034374 177 56 SH10886 10886 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1316 1329 393.24656 518.060623 455.6535915 2.658634798 0.428439 177 57 SH20898 20898 YLR306W spliced 31.082167 177.59964 104.3409035 2.018454593 -0.071254 177 58 SH18782 18782 YNL265C_14_145280_144279_INTRON_28_132 3' exon 30.933418 194.286738 30.933418 164.35332 97.643369 1.989642756 -0.001468 177 59 SH15005 15005 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.844078 193.062227 28.844078 165.218149 97.0311135 1.986911015 -0.147289 177 60 SH9965 9965 RUF5-1 RUF5-1 631 648 32.614779 190.086233 111.350506 2.046692195 -0.101888 177 61 SH8324 8324 snoRNA cluster4 intergenic 28.688194 170.845238 28.688194 143.157044 85.922619 1.934107506 -0.044191 177 62 SH2602 2602 Pro3 5' flank 28.700307 156.063477 92.381892 1.965586852 -0.111481 177 63 SH21328 21328 YPR043W spliced 101.827323 282.885087 192.356205 2.2841062 -0.004803 177 64 SH19786 19786 Negative Control 81.785599 223.105605 152.445602 2.1831149 0.253086 177 65 SH6717 6717 snR49 snR49 111 131 27.078278 141.407502 84.24289 1.925533257 -0.156243 177 66 SH5589 5589 snR33 3' 29.176081 128.591137 78.883609 1.896986772 0.07538 177 67 SH1289 1289 Ile2 3' flank 29.297948 155.918086 92.608017 1.966648585 -0.067955 177 68 SH2273 2273 Phe2 5' flank 29.385334 153.961672 91.673503 1.962243827 -0.051545 177 69 SH5717 5717 snR34 snR34 506 522 49.311894 222.092483 135.7021885 2.132586852 -0.144635 177 70 SH5942 5942 snR36 snR36 166 182 29.441021 148.148855 88.794938 1.948388208 -0.016439 177 71 SH2109 2109 Met1 5' flank 29.417649 183.885468 106.6515585 2.027967206 -0.209482 177 72 SH69 69 Ala2 5' flank 31.350201 177.565741 104.457971 2.018941586 -0.055008 177 73 SH12294 12294 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 43.15797 194.209399 43.15797 152.051429 97.6046995 1.989470729 0.610395 177 74 SH19734 19734 Negative Control 29.250502 154.838519 92.0445105 1.963997892 -0.06569 177 75 SH16066 16066 YDR005C_4_458099_456832_INTRON_7_86 exon/intron 31.157149 226.897528 31.157149 196.740379 113.948764 2.056709619 -0.21472 177 76 SH1850 1850 Leu9 5' flank - tRNA8 8 36.997184 193.83891 115.418047 2.062273721 -0.024881 177 77 SH17248 17248 YHR097C_8_298611_297387_INTRON_126_249 intron 36.943852 199.040691 36.943852 163.096839 100.0203455 2.00008835 0.305822 177 78 SH11983 11983 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6801 6818 88.168985 261.649465 174.909225 2.242812715 0.007027 177 79 SH8687 8687 LSR1 / U2 RNA U2 76 93 29.036886 135.690007 82.3634465 1.915734511 0.022999 177 80 SH3835 3835 RNaseP RNaseP 141 153 30.968677 172.192786 101.5807315 2.006811336 -0.04668 177 81 SH18530 18530 YMR225C_13_721402_720959_INTRON_59_205 3' exon 46.614237 224.388323 46.614237 178.774086 112.6941615 2.051901417 0.304588 177 82 SH15262 15262 MT 9S rRNA 9S 28.971921 173.131176 28.971921 145.159255 87.065588 1.939846537 -0.034288 177 83 SH12296 12296 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 40.683495 187.688142 40.683495 148.004647 94.344071 1.974714612 0.585183 177 84 SH13388 13388 MT COX1 exon 5b / intronic 27.004672 179.730999 27.004672 153.726327 90.3654995 1.956002654 -0.22707 177 85 SH21170 21170 YNL312W spliced 32.877902 187.700582 110.289242 2.042533152 -0.07095 177 86 SH3065 3065 Ser3 tRNA 21 35 2352.742533 1391.32767 1872.035102 3.272313988 1.109985 177 87 SH9735 9735 RUF4 RUF4 451 465 31.045706 159.989014 95.51736 1.980082311 0.031415 177 88 SH5527 5527 snR33 5' 49.88154 205.244569 127.5630545 2.10572491 0.036655 177 89 SH1810 1810 Leu8 tRNA 76 90 29.291463 182.82022 106.0558415 2.025534594 -0.211615 177 90 SH19006 19006 YOR182C_15_678792_678190_INTRON_4_414 5' exon 37.337508 200.049017 37.337508 163.711509 100.5245085 2.002271958 0.312171 177 91 SH6919 6919 snR58 5' 33.489416 178.883277 106.1863465 2.026068679 0.032318 177 92 SH1296 1296 Ile2 3' flank 29.602303 151.543454 90.5728785 1.95699817 -0.023453 177 93 SH18149 18149 YLR406C_12_931752_931062_INTRON_58_406 intron 31.675366 187.968565 31.675366 157.293199 94.4842825 1.975359569 0.086851 177 94 SH9133 9133 snR7 U5 RNA 5' 29.73978 134.078406 81.909093 1.913332117 0.082685 177 95 SH21756 21756 copy of SH13181 95.488545 244.179511 169.834028 2.23002471 0.216549 177 96 SH1523 1523 Leu3 tRNA 86 102 52.09559 195.59659 123.84609 2.0928823 0.172337 177 97 SH19036 19036 YOR234C_15_779404_778554_INTRON_20_546 intron 29.989782 205.763508 29.989782 176.773726 103.381754 2.014443896 -0.1334 177 98 SH10820 10820 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 986 1005 77.080073 222.338348 149.7092105 2.17524852 0.207979 177 99 SH14173 14173 MT COB intronic 30.279408 208.626589 30.279408 179.347181 104.8132945 2.020416372 -0.130117 177 100 SH12972 12972 MT COX1 COX1ai2 28.3944 174.27599 28.3944 146.88159 87.637995 1.942692433 -0.085887 177 101 SH7325 7325 snR66 3' 28.545826 153.145846 90.845836 1.958305026 -0.107394 177 102 SH16957 16957 YGR029W_7_543547_544199_INTRON_87_169 intron 28.678906 164.917352 28.678906 137.238446 82.958676 1.918861812 -0.011969 177 103 SH14864 14864 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 29.826578 173.027165 29.826578 144.200587 87.0135825 1.93958705 0.032105 177 104 SH6519 6519 snR46 snR46 86 103 43.600792 197.88978 120.745286 2.081870185 0.032328 178 2 SH7056 7056 snR62 snR62 71 88 35.997122 186.793034 111.395078 2.046866002 0.036371 178 3 SH19162 19162 YPL075W_16_412249_415357_INTRON_9_759 intron 31.659456 194.748711 31.659456 164.089255 97.8743555 1.990668915 0.043535 178 4 SH5147 5147 snR11 3' 29.382689 148.230705 88.806697 1.948445718 -0.021002 178 5 SH1722 1722 Leu7 5' flank 29.094791 155.123417 92.109104 1.964302558 -0.078256 178 6 SH8503 8503 snR19 / U1 RNA U1 11 27 188.4325 372.745958 280.589229 2.448070996 0.129009 178 7 SH21797 21797 copy of SH14862 28.473949 163.359372 95.9166605 1.98189405 -0.164927 178 8 SH10918 10918 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1476 1493 453.236707 762.261422 607.7490645 2.783724299 -0.03484 178 9 SH20614 20614 YHR079C-A spliced 35.364889 204.532281 119.948585 2.078995129 -0.173754 178 10 SH2604 2604 Pro3 5' flank 40.59182 195.051945 117.8218825 2.071225957 0.022421 178 11 SH7231 7231 snR65 5' 36.52929 161.063911 98.7966005 1.994742001 0.313469 178 12 SH14371 14371 MT ORF9 and ORF10 (hypothetical) ORF10 34.422377 178.955448 34.422377 145.533071 89.977724 1.954135003 0.321875 178 13 SH4399 4399 telomerase RNA telomerase 1031 1048 30.583885 155.365751 92.974818 1.968365337 0.024066 178 14 SH6332 6332 snR43 5' 48.608539 195.940619 122.274579 2.087336176 0.123374 178 15 SH21719 21719 copy of SH11709 101.960218 248.723762 175.34199 2.243885931 0.243311 178 16 SH16515 16515 YER117W_5_396765_397649_INTRON_43_513 intron 30.337991 167.676023 30.337991 138.338032 84.3380115 1.926023357 0.100255 178 17 SH5737 5737 snR34 3' 32.132149 151.188637 91.660393 1.962181715 0.14863 178 18 SH9379 9379 RUF1 RUF1 471 487 72.040777 244.735005 158.387891 2.199721976 -0.044329 178 19 SH2456 2456 Phe5 tRNA-intron/exon 51 66 1297.238879 2247.256971 1772.247925 3.248524477 -0.425821 178 20 SH9195 9195 snR7 U5 RNA 3' 30.449443 162.066143 96.257793 1.9834359 -0.019281 178 21 SH17632 17632 YJR094W-A_10_608000_608553_INTRON_3_277 intron 28.713411 204.521187 28.713411 176.807776 102.7605935 2.011826604 -0.2149 178 22 SH11217 11217 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2971 2992 41.545718 200.025554 120.785636 2.08201529 -0.02118 178 23 SH4060 4060 SRP RNA SRP RNA 191 208 43.485973 209.414338 126.4501555 2.101919368 -0.097019 178 24 SH18267 18267 YML056C_13_164176_162194_INTRON_461_868 intron 30.759374 182.403975 30.759374 152.644601 91.7019875 1.962378748 0.050254 178 25 SH444 444 Asp1 tRNA 41 53 108.806742 286.098398 197.45257 2.295462791 0.038829 178 26 SH299 299 Arg4 3' flank 28.988845 144.101691 86.545268 1.937243327 -0.02736 178 27 SH8820 8820 LSR1 / U2 RNA U2 741 756 32.649765 162.509937 97.579851 1.989360151 0.11094 178 28 SH2650 2650 Pro4 5' flank 30.80518 167.470526 99.137853 1.996239509 -0.028323 178 29 SH7305 7305 snR66 snR66 16 32 86.049765 266.344763 176.197264 2.24599916 -0.050505 178 30 SH5611 5611 snR34 5' 27.136032 171.873547 99.5047895 1.997843985 -0.305963 178 31 SH16583 16583 YFL034C-A_6_64931_64242_INTRON_13_333 5' exon 175.967873 532.426624 175.967873 357.458751 266.713312 2.426044692 0.128349 178 32 SH13556 13556 MT COX1 Exon 6 30.85003 189.05937 30.85003 159.20934 95.029685 1.97785929 0.022251 178 33 SH3888 3888 RNaseP 3' 29.987976 132.743002 81.365489 1.910440239 0.10799 178 34 SH7074 7074 snR62 3' 30.981792 163.313098 97.147445 1.987431383 0.007904 178 35 SH17703 17703 YKL081W_11_282533_284097_INTRON_206_531 intron 29.230029 170.170508 29.230029 141.940479 85.585254 1.932398944 0.001866 178 36 SH16344 16344 YDR500C_4_1450856_1450201_INTRON_8_396 intron 34.90419 227.121144 34.90419 193.216954 114.060572 2.057135545 -0.059082 178 37 SH19866 19866 Negative Control 35.059957 167.360008 101.2099825 2.00522335 0.199581 178 38 SH21248 21248 YPL031C spliced 33.365098 185.287515 109.3263065 2.038724676 -0.031494 178 39 SH12736 12736 MT COX1 Exon1 32.606505 198.048753 32.606505 166.442248 99.5243765 1.997929465 0.08417 178 40 SH6294 6294 snR42 snR42 251 268 33.730794 159.42303 96.576912 1.984873315 0.191318 178 41 SH11011 11011 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1941 1959 31.995765 149.025519 90.510642 1.956699645 0.151477 178 42 SH19551 19551 CBP1 2.2 34.033144 173.976624 104.004884 2.017053734 0.098544 178 43 SH12053 12053 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7151 7168 30.301129 169.781231 100.04118 2.000178806 -0.073087 178 44 SH3109 3109 Ser4 5' flank 30.352477 164.907016 97.6297465 1.989582162 -0.040326 178 45 SH15050 15050 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.463431 196.519251 28.463431 169.05582 98.7596255 1.994579434 -0.19346 178 46 SH14639 14639 MT 21S rRNA Sce1 endonuc 30.402866 178.511372 30.402866 149.108506 89.755686 1.953061971 0.045047 178 47 SH5370 5370 snR31 5' 65.169713 256.375843 160.772778 2.206212516 -0.22471 178 48 SH20051 20051 YBR191W spliced 45.943954 190.449748 118.196851 2.072605906 0.151498 178 49 SH2576 2576 Pro2 3' flank 34.477074 159.878959 97.1780165 1.98756803 0.229325 178 50 SH15851 15851 YDL075W_4_322225_322987_INTRON_58_478 intron/exon 29.777693 177.457416 29.777693 148.679723 89.228708 1.950504605 0.004261 178 51 SH18271 18271 YML056C_13_164176_162194_INTRON_461_868 intron 30.903811 248.24079 30.903811 218.336979 124.620395 2.095589123 -0.411399 178 52 SH2460 2460 Phe5 tRNA 71 85 52.682168 194.045762 123.363965 2.091188319 0.197531 178 53 SH8122 8122 snoRNA cluster 3; snR41 27.241048 173.141536 27.241048 146.900488 87.070768 1.939872375 -0.17332 178 54 SH5025 5025 snR10 snR10 156 171 31.243059 137.889258 84.5661585 1.927196603 0.164699 178 55 SH19654 19654 SIR1 2.2 29.274114 142.658346 85.96623 1.934327881 0.001109 178 56 SH7040 7040 snR62 5' - 10 -9 10 31.185489 164.840413 98.012951 1.991283465 0.010697 178 57 SH6220 6220 snR40 3' 29.111298 154.922702 92.017 1.96386807 -0.07603 178 58 SH17273 17273 YHR123W_8_354817_356083_INTRON_51_141 3' exon 30.93385 199.625764 30.93385 169.691914 100.312882 2.001356708 -0.033919 178 59 SH21213 21213 YOR096W spliced 44.444039 231.538018 137.9910285 2.139850852 -0.307633 178 60 SH13981 13981 MT COB intronic 30.694194 198.014032 30.694194 168.319838 99.507016 1.997853703 -0.04021 178 61 SH14419 14419 MT 21S rRNA 21S rRNA3 234.857049 702.911052 234.857049 469.054003 351.955526 2.546487788 -0.021858 178 62 SH19378 19378 YPR043W_16_654161_654842_INTRON_3_405 intron 36.481331 190.822363 36.481331 155.341032 95.9111815 1.981869241 0.364211 178 63 SH652 652 Gln2 tRNA 46 58 42.421226 168.568906 105.495066 2.023232148 0.376124 178 64 SH8321 8321 snoRNA cluster4 intergenic 28.927513 179.35701 28.927513 151.429497 90.178505 1.955103031 -0.070699 178 65 SH21110 21110 YNL069C spliced 31.035509 172.215789 101.625649 2.007003332 -0.042786 178 66 SH12354 12354 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.180589 209.19854 32.180589 178.017951 105.09927 2.0215997 -0.008722 178 67 SH1075 1075 Gly3 3' flank 27.378964 144.341622 85.860293 1.933792366 -0.14899 178 68 SH5507 5507 snR32 3' 27.468377 128.931987 78.200182 1.893207764 -0.050858 178 69 SH1586 1586 Leu4 101-114 + 3' flank 101 35.472996 170.12244 102.797718 2.011983474 0.185985 178 70 SH10249 10249 RUF6 3' 29.517556 173.985937 101.7517465 2.007541872 -0.146919 178 71 SH1673 1673 Leu6 5' flank 29.493672 175.91817 102.705921 2.011595481 -0.159654 178 72 SH13057 13057 MT COX1 COX1ai2 29.442531 185.460994 29.442531 157.018463 93.230497 1.969557999 -0.063436 178 73 SH20989 20989 YML067C spliced 29.373971 198.440058 113.9070145 2.056550469 -0.299835 178 74 SH10688 10688 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 326 343 31.270682 162.66684 96.968761 1.986631847 0.029283 178 75 SH16679 16679 YGL030W_7_439087_439634_INTRON_4_233 exon/intron 41.046699 246.133872 41.046699 206.087173 123.566936 2.091902278 -0.096656 178 76 SH18362 18362 YMR033W_13_337787_339276_INTRON_31_116 3' exon 29.149206 185.545032 29.149206 157.395826 93.272516 1.969753692 -0.086159 178 77 SH16854 16854 YGL183C_7_157071_156547_INTRON_4_86 intron/exon 34.968538 180.634643 34.968538 146.666105 90.8173215 1.958168689 0.343423 178 78 SH126 126 Arg1 6-12 6 18 32.947859 185.013074 108.9804665 2.037348663 -0.044068 178 79 SH1900 1900 Lys1 5' flank 33.876902 177.883296 105.880099 2.024814339 0.055558 178 80 SH5996 5996 snR36 3' 30.906711 159.527639 95.217175 1.978715292 0.024442 178 81 SH11991 11991 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6841 6860 32.824966 146.542877 89.6839215 1.95271459 0.218184 178 82 SH18768 18768 YNL246W_14_185459_186348_INTRON_33_127 intron 112.889572 397.905689 112.889572 286.016117 199.4528445 2.299840234 0.076031 178 83 SH6355 6355 snR43 snR43 16 33 30.835094 158.779065 94.8070795 1.976840768 0.023438 178 84 SH21477 21477 copy of SH1444 32.78616 177.163675 104.9749175 2.021085542 0.023194 178 85 SH16502 16502 YER117W_5_396765_397649_INTRON_43_513 intron 30.86594 185.312288 30.86594 155.446348 93.156144 1.969211504 0.042697 178 86 SH14649 14649 MT 21S rRNA intronic / 21S rRNA4 57.38473 285.136388 57.38473 228.751658 143.068194 2.155543095 -0.095824 178 87 SH16410 16410 YER056C-A_5_270183_269421_INTRON_38_434 intron 31.01786 222.111316 31.01786 192.093456 111.555658 2.047491602 -0.179752 178 88 SH10936 10936 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1566 1581 18363.95025 8470.22978 13417.09001 4.127658333 0.927042 178 89 SH4102 4102 SRP RNA SRP RNA 401 417 31.281911 145.049598 88.1657545 1.945299928 0.126557 178 90 SH6961 6961 snR58 3' 29.446768 161.478013 95.4623905 1.979832305 -0.085824 178 91 SH6451 6451 snR45 snR45 101 113 33.567058 173.030033 103.2985455 2.014094206 0.091231 178 92 SH1027 1027 Gly2 3' flank 29.698392 165.036298 97.367345 1.988413328 -0.085823 178 93 SH16573 16573 YER179W_5_548416_549512_INTRON_133_224 5' exon 31.806018 206.324998 31.806018 175.51898 103.662499 2.015621674 -0.016245 178 94 SH786 786 Glu1 5' flank 29.884957 157.895576 93.8902665 1.972620572 -0.036995 178 95 SH1392 1392 Leu1 tRNA-exon/intron 31 50 29.967169 186.300963 108.134066 2.033962533 -0.188143 178 96 SH682 682 Gln3 5' flank 30.056854 176.159419 103.1081365 2.013292938 -0.125687 178 97 SH12060 12060 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7186 7201 60.765753 234.792403 147.779078 2.169612953 -0.103412 178 98 SH14444 14444 MT 21S rRNA 21S rRNA3 61.031351 292.810098 61.031351 232.778747 146.905049 2.167036722 -0.082026 178 99 SH20468 20468 YGL187C spliced 30.431866 166.174989 98.3034275 1.99256866 -0.043225 178 100 SH10178 10178 RUF6 RUF6 736 754 30.580449 151.752322 91.1663855 1.959834737 0.042896 178 101 SH13324 13324 MT COX1 COX1-ai5a 30.722209 186.052848 30.722209 156.330639 93.526424 1.970934329 0.028416 178 102 SH13174 13174 MT COX1 Exon4 35.017909 223.487167 35.017909 189.469258 112.2435835 2.050161524 -0.014123 178 103 SH1432 1432 Leu2 5' flank 30.935881 179.27992 105.1079005 2.021635361 -0.08964 178 104 SH8013 8013 snoRNA cluster 2 intergenic 33.096462 205.929205 33.096462 173.832743 103.4646025 2.014791794 0.066507 179 2 SH21339 21339 YPR098C spliced 27.900406 137.913891 82.9071485 1.918591978 -0.073756 179 3 SH13601 13601 MT ATP8/AAP1 ATP8 29.697591 184.949373 29.697591 156.251782 92.9746865 1.968364723 -0.04157 179 4 SH11855 11855 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6161 6179 25254.01403 9234.454652 17244.23434 4.236643916 1.202085 179 5 SH557 557 Cys1 3' flank 33.101099 162.751276 97.9261875 1.990898847 0.135097 179 6 SH17267 17267 YHR123W_8_354817_356083_INTRON_51_141 exon/intron 34.708585 202.401424 34.708585 168.692839 101.700712 2.007323993 0.174129 179 7 SH2872 2872 Pro7 3' flank 32.400009 186.079088 109.2395485 2.038379896 -0.073849 179 8 SH21548 21548 copy of SH4257 31.084406 176.426083 103.7552445 2.016010058 -0.064383 179 9 SH5780 5780 snR35 snR35 86 103 32.622815 151.505343 92.064079 1.964090213 0.178386 179 10 SH20121 20121 YDL079C spliced 46.286563 211.877612 129.0820875 2.11086598 -0.083667 179 11 SH13643 13643 MT ATP6 ATP6 32.893335 198.685122 32.893335 166.791787 99.842561 1.999315712 0.098411 179 12 SH20692 20692 YIL148W spliced 39.04299 199.205279 119.1241345 2.075999758 -0.049077 179 13 SH3510 3510 Tyr1 3' flank 32.416151 149.920616 91.1683835 1.959844254 0.173715 179 14 SH7769 7769 snoRNA cluster1 snR76 32.263453 214.442681 32.263453 183.179228 107.7213405 2.032301749 -0.052404 179 15 SH8800 8800 LSR1 / U2 RNA U2 641 657 32.163958 177.749121 104.9565395 2.021009503 -0.008152 179 16 SH7471 7471 snR71 5' 30.30863 173.355972 101.832301 2.007885557 -0.093794 179 17 SH7578 7578 snR189 5' 28.494843 135.771153 82.132998 1.914517676 -0.017153 179 18 SH1029 1029 Gly2 3' flank 32.114025 147.147227 89.630626 1.95245643 0.169409 179 19 SH10253 10253 RUF6 3' 31.257745 163.644675 97.45121 1.988787236 0.02242 179 20 SH15637 15637 YBR186W_2_600511_602318_INTRON_1552_1664 intron 41.286767 207.644218 41.286767 167.357451 104.322109 2.018376358 0.372655 179 21 SH3031 3031 Ser2 3' flank 30.502128 172.213759 101.3579435 2.00585779 -0.075181 179 22 SH12175 12175 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7761 7776 336.794464 644.234077 490.5142705 2.690651647 -0.123554 179 23 SH4720 4720 snR4 snR4 136 152 37.970592 172.060479 105.0155355 2.021253551 0.248378 179 24 SH1548 1548 Leu4 5' flank 27.086286 170.990081 99.0381835 1.995802666 -0.305596 179 25 SH17733 17733 YKL156W_11_158616_159214_INTRON_4_353 intron 27.124487 180.910994 27.124487 154.786507 90.955497 1.958828951 -0.223102 179 26 SH2777 2777 Pro6 5' flank 28.970946 185.118289 107.0446175 2.029564835 -0.244875 179 27 SH17205 17205 YHR039C-A_8_187670_187164_INTRON_4_165 exon/intron 43.643549 238.212103 43.643549 195.568554 119.6060515 2.077753153 0.05988 179 28 SH5234 5234 snR30 snR30 21 36 49.154384 196.048211 122.6012975 2.088495066 0.129236 179 29 SH10482 10482 RUF8 RUF8 336 350 235.748433 435.577473 335.662953 2.525903411 0.109757 179 30 SH11419 11419 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3981 3998 71.318563 226.210368 148.7644655 2.172499206 0.106596 179 31 SH19523 19523 ACT1 27.1854 169.912415 98.5489075 1.993651814 -0.292894 179 32 SH11845 11845 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6111 6128 393.881342 602.209919 498.0456305 2.697269134 0.180047 179 33 SH12531 12531 MT_ORF6 + ORF7 (hypothetical) ORF6/7 30.968314 181.14792 30.968314 151.179606 91.07396 1.959394221 0.072116 179 34 SH11225 11225 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3011 3032 43.990518 203.19873 123.594624 2.091999581 -0.021898 179 35 SH1836 1836 Leu9 5' flank 31.136984 173.047312 102.092148 2.008992341 -0.041577 179 36 SH19057 19057 YOR234C_15_779404_778554_INTRON_20_546 intron 29.385079 173.161413 29.385079 144.776334 87.0807065 1.939921944 -0.002408 179 37 SH2892 2892 Pro8 5' flank 33.227492 181.731922 107.479707 2.031326474 -0.003749 179 38 SH12555 12555 MT_15S 5' 31.501784 216.293747 31.501784 185.791963 108.6468735 2.036017233 -0.104923 179 39 SH4289 4289 telomerase RNA telomerase 481 498 31.654167 186.736426 109.1952965 2.038203932 -0.107698 179 40 SH9292 9292 RUF1 RUF1 36 53 33.70152 141.420007 87.5607635 1.94230954 0.301702 179 41 SH4674 4674 snR4 5' 31.958295 156.880458 94.4193765 1.975061128 0.106744 179 42 SH3129 3129 Ser4 tRNA 51 66 55.026441 219.759864 137.3931525 2.137965089 -0.04239 179 43 SH15061 15061 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.357733 189.677053 28.357733 162.31932 95.3385265 1.979268435 -0.16824 179 44 SH5334 5334 snR30 snR30 521 533 28.414319 154.464949 91.439634 1.961134479 -0.123924 179 45 SH16759 16759 YGL087C_7_346902_346404_INTRON_12_96 exon/intron 28.451089 182.196853 28.451089 154.745764 91.5984265 1.961888013 -0.122712 179 46 SH1583 1583 Leu4 tRNA 86 102 53.497393 213.235424 133.3664085 2.125046456 0.000822 179 47 SH10534 10534 RUF8 RUF8 596 615 30.444199 180.946797 105.695498 2.024056489 -0.128992 179 48 SH10158 10158 RUF6 RUF6 636 657 30.513505 181.566646 106.0400755 2.025470028 -0.128216 179 49 SH8920 8920 LSR1 / U2 RNA 3' 46.108971 197.527054 121.8180125 2.08571151 0.071683 179 50 SH18926 18926 YOL121C_15_92849_92025_INTRON_21_410 intron 30.744732 212.571333 30.744732 182.826601 106.7856665 2.028512963 -0.12113 179 51 SH16428 16428 YER074W_5_306319_307192_INTRON_4_469 intron 44.566564 299.801773 44.566564 256.235209 150.4008865 2.177250396 -0.528499 179 52 SH6238 6238 snR42 5' 29.06986 143.566664 86.318262 1.936102687 -0.018584 179 53 SH9927 9927 RUF5-1 RUF5-1 441 458 29.172865 169.708639 99.440752 1.9975644 -0.145491 179 54 SH864 864 Glu2 3' flank 27.262643 131.984653 79.623648 1.901042071 -0.085713 179 55 SH20380 20380 YFL034C-A spliced 35.146773 178.541042 106.8439075 2.028749763 0.093414 179 56 SH5713 5713 snR34 snR34 486 501 33.114943 182.897902 108.0064225 2.033449581 -0.018605 179 57 SH9273 9273 RUF1 5' 31.044267 201.071552 116.0579095 2.064674744 -0.255814 179 58 SH5377 5377 snR31 5' 32.870727 150.195053 91.53289 1.961577175 0.201134 179 59 SH7586 7586 snR189 snR189 1 22 42.486803 213.442261 127.964532 2.107089613 -0.154655 179 60 SH3229 3229 Thr1 tRNA 1 15 199.738422 330.561628 265.150025 2.423491672 0.407292 179 61 SH11568 11568 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4726 4742 433.477856 546.789779 490.1338175 2.690314668 0.457684 179 62 SH204 204 Arg2 3' flank 30.681588 168.513821 99.5977045 1.998249329 -0.042148 179 63 SH20785 20785 YKL081W spliced 26.880479 122.888888 74.8846835 1.874392999 -0.05557 179 64 SH19005 19005 YOR122C_15_552886_552297_INTRON_14_222 3' exon 32.849786 209.225973 32.849786 177.376187 105.1129865 2.021656376 0.023494 179 65 SH5671 5671 snR34 snR34 276 295 29.095348 177.308498 103.201923 2.01368779 -0.193071 179 66 SH5007 5007 snR10 snR10 66 82 31.219181 175.560166 103.3896735 2.014477164 -0.051296 179 67 SH10060 10060 RUF6 RUF6 146 166 35.326802 181.428571 108.3776865 2.034939876 0.072461 179 68 SH235 235 Arg3 31-43 31 43 39.42942 174.196205 106.8128125 2.028623351 0.252863 179 69 SH11109 11109 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2431 2449 164.663229 382.193876 273.4285525 2.436843863 -0.064148 179 70 SH7503 7503 snR71 3' 27.567842 151.977048 89.772445 1.953143054 -0.174681 179 71 SH10551 10551 RUF8 RUF8 681 698 27.546885 151.962527 89.754706 1.953057229 -0.176209 179 72 SH18221 18221 YML026C_13_223828_222987_INTRON_48_448 5' exon 30.475546 193.168498 30.475546 163.692952 97.084249 1.987148775 -0.025593 179 73 SH18634 18634 YNL096C_14_444312_443395_INTRON_145_489 intron 63.221637 327.815268 63.221637 265.593631 164.407634 2.215921979 -0.322385 179 74 SH17159 17159 YHR016C_8_138446_136872_INTRON_48_215 5' exon 29.327698 202.650295 29.327698 174.322597 101.8251475 2.007855048 -0.160946 179 75 SH21732 21732 copy of SH12132 33.184304 166.889931 100.0371175 2.000161169 0.114277 179 76 SH19108 19108 YOR312C_15_901173_900242_INTRON_2_427 intron 29.164376 197.36155 29.164376 169.197174 99.180775 1.996427498 -0.14365 179 77 SH9516 9516 RUF3 5' 27.135819 157.939539 92.537679 1.966318602 -0.237938 179 78 SH20405 20405 YFR031C-A spliced 80.173761 236.994141 158.583951 2.200259234 0.114711 179 79 SH16910 16910 YGL232W_7_62074_63001_INTRON_58_115 3' exon 30.939038 174.328748 30.939038 144.38971 87.664374 1.942823136 0.107379 179 80 SH19090 19090 YOR312C_15_901173_900242_INTRON_2_427 5' exon 32.848237 227.157383 32.848237 195.309146 114.0786915 2.057204531 -0.139083 179 81 SH11857 11857 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6171 6189 22539.13429 11439.7607 16989.4475 4.230179256 0.714215 179 82 SH13096 13096 MT COX1 COX1ai3 36.685313 192.540829 36.685313 156.855516 96.7704145 1.985742601 0.363252 179 83 SH11976 11976 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6766 6782 3058.173956 2770.402991 2914.288474 3.464532539 0.376686 179 84 SH5390 5390 snR31 snR31 16 33 30.831099 162.515855 96.673477 1.985307339 0.003762 179 85 SH16008 16008 YDL137W_4_216158_217074_INTRON_1_332 intron 32.81268 201.127105 32.81268 169.314425 101.0635525 2.00459456 0.07857 179 86 SH10666 10666 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 216 234 40.707232 205.172277 122.9397545 2.089692342 -0.091472 179 87 SH1759 1759 Leu7 3' flank 28.088705 115.631698 71.8602015 1.856488431 0.085392 179 88 SH16820 16820 YGL178W_7_167356_170575_INTRON_4_643 intron 35.094322 199.008456 35.094322 164.914134 100.004228 2.000018362 0.225598 179 89 SH17305 17305 YHR203C_8_505526_504472_INTRON_15_283 intron 31.310661 218.990833 31.310661 188.680172 109.9954165 2.041374589 -0.138243 179 90 SH2512 2512 Pro1 tRNA 51 63 1366.089001 1195.457949 1280.773475 3.107472325 0.638921 179 91 SH12172 12172 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7746 7769 29.639539 135.993226 82.8163825 1.918116256 0.064524 179 92 SH20177 20177 YDL189W spliced 35.800745 185.295349 110.548047 2.043551075 0.050034 179 93 SH21289 21289 YPL175W spliced 31.915352 187.487646 109.701499 2.040212562 -0.104629 179 94 SH1805 1805 Leu8 tRNA-intron/exon 51 70 30.008783 164.387847 97.198315 1.987658736 -0.061056 179 95 SH8028 8028 snoRNA cluster 2 snR55 28.081972 176.809425 28.081972 149.727453 88.9047125 1.948924782 -0.124144 179 96 SH9589 9589 RUF3 RUF3 331 350 30.210947 157.095309 93.653128 1.971522287 -0.010364 179 97 SH15636 15636 YBR186W_2_600511_602318_INTRON_1552_1664 intron 28.280058 137.479649 28.280058 110.199591 69.2398245 1.840355958 0.139496 179 98 SH8863 8863 LSR1 / U2 RNA U2 956 973 32.496704 152.064904 92.280804 1.96511137 0.167362 179 99 SH3784 3784 Val4 3' flank 39.864433 196.539558 118.2019955 2.072624808 -0.005794 179 100 SH19800 19800 Negative Control 30.706823 162.033255 96.370039 1.983942035 -0.001648 179 101 SH12721 12721 MT COX1 5' 28.747022 161.39116 28.747022 133.644138 81.19558 1.909532388 0.013709 179 102 SH1457 1457 Leu2 tRNA-intron/exon 56 72 108.360119 245.044991 176.702555 2.247242829 0.330293 179 103 SH3540 3540 Tyr2 5' flank 30.99497 156.270771 93.6328705 1.971428338 0.04707 179 104 SH6528 6528 snR46 snR46 131 150 50.080309 241.517064 145.7986865 2.163753611 -0.314618 180 2 SH21810 21810 copy of SH15490 32.040353 195.741194 113.8907735 2.056488543 -0.172643 180 3 SH2514 2514 Pro1 61-72 + 3' flank 61 33.813322 196.339656 115.076489 2.060986603 -0.116463 180 4 SH2173 2173 Met2 5' flank - tRNA8 8 37.524639 183.945456 110.7350475 2.044285096 0.099231 180 5 SH8231 8231 snoRNA cluster 3; 3' 37.165733 208.885866 37.165733 172.720133 104.942933 2.020953198 0.216256 180 6 SH17476 17476 YJL001W_10_434855_435618_INTRON_66_181 intron 32.868132 189.151756 32.868132 157.283624 95.075878 1.978070345 0.156613 180 7 SH21770 21770 copy of SH13810 29.613585 156.513327 93.063456 1.968779176 -0.048803 180 8 SH14258 14258 MT VAR1 includes 5’ processing site 5' 32.15079 192.587021 32.15079 161.436231 96.7935105 1.985846241 0.088885 180 9 SH21919 21919 copy of SH20199 33.681694 183.113095 108.3973945 2.035018843 -0.000261 180 10 SH13424 13424 MT COX1 intronic 35.189451 239.838138 35.189451 205.648687 120.419069 2.080695265 -0.189128 180 11 SH18975 18975 YOR096W_15_505793_506766_INTRON_145_545 intron 34.840751 196.521954 34.840751 162.681203 98.760977 1.994585378 0.231287 180 12 SH19353 19353 YPL249C-A_16_76239_75699_INTRON_17_254 intron 27.201826 162.272974 27.201826 136.071148 81.636487 1.911884308 -0.115576 180 13 SH19466 19466 ADH1 45.25895 175.21902 110.238985 2.042335206 0.332782 180 14 SH21404 21404 Pro8 spliced 74.210769 230.050888 152.1308285 2.18221723 0.106313 180 15 SH19936 19936 YBL027W spliced 35.799613 200.129289 117.964451 2.071751151 -0.117715 180 16 SH3918 3918 RNase MRP RNaseMRP 6 22 51.997647 221.354985 136.676316 2.135693264 -0.100731 180 17 SH5302 5302 snR30 snR30 361 373 33.889768 181.991314 107.940541 2.03318459 0.017487 180 18 SH12716 12716 MT ORF 8 (hypothetical) 3' 31.196664 185.209895 31.196664 155.013231 93.1049475 1.96897276 0.067076 180 19 SH3005 3005 Ser2 5' flank - tRNA5 5 32.137464 191.784869 111.9611665 2.049067415 -0.134561 180 20 SH13345 13345 MT COX1 COX1-ai5a 30.395673 185.683597 30.395673 156.287924 93.3417985 1.970076165 0.006461 180 21 SH21868 21868 copy of SH19503 34.097802 163.513689 98.8057455 1.994782199 0.185807 180 22 SH16796 16796 YGL137W_7_249872_252741_INTRON_19_218 5' exon 41.472418 245.038687 41.472418 204.566269 123.0193435 2.089973405 -0.073536 180 23 SH8792 8792 LSR1 / U2 RNA U2 601 620 30.6386 147.593677 89.1161385 1.94995636 0.069348 180 24 SH11462 11462 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4196 4212 159.083033 341.327712 250.2053725 2.398296631 0.102331 180 25 SH3303 3303 Thr2 3' flank 30.750682 183.254742 107.002712 2.029394785 -0.123144 180 26 SH3069 3069 Ser3 tRNA 41 59 32.606604 195.860457 114.2335305 2.057793599 -0.152684 180 27 SH7864 7864 snoRNA cluster1 intergenic/snR73 29.875296 194.086123 29.875296 165.210827 97.5430615 1.989196382 -0.074354 180 28 SH18560 18560 YMR292W_13_854795_855293_INTRON_23_104 intron 30.800603 188.787049 30.800603 158.986446 94.8935245 1.977236577 0.020058 180 29 SH12361 12361 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.651506 208.614595 32.651506 176.963089 104.8072975 2.020391523 0.020176 180 30 SH15292 15292 MT 9S rRNA 9S 29.019762 188.888567 29.019762 160.868805 94.9442835 1.977468821 -0.113076 180 31 SH20759 20759 YJR094W-A spliced 134.638584 361.406981 248.0227825 2.394491575 -0.178918 180 32 SH7969 7969 snoRNA cluster 2 5' 53.130271 275.561893 53.130271 223.431622 138.2809465 2.140762344 -0.104236 180 33 SH433 433 Asp1 5' flank - tRNA6 5' flank 6 27.357103 142.380681 84.868892 1.928748532 -0.140013 180 34 SH2127 2127 Met1 tRNA 21 35 47.817171 198.528775 123.172973 2.090515424 0.083419 180 35 SH17730 17730 YKL156W_11_158616_159214_INTRON_4_353 intron 33.065162 198.244618 33.065162 166.179456 99.622309 1.998356603 0.111888 180 36 SH8153 8153 snoRNA cluster 3; intergenic/snR70 27.581719 164.445316 27.581719 137.863597 82.722658 1.91762448 -0.097667 180 37 SH4698 4698 snR4 snR4 26 45 35.137124 153.370191 94.2536575 1.974298212 0.307003 180 38 SH4922 4922 snR9 snR9 16 35 39.020843 178.989858 109.0053505 2.037447816 0.186371 180 39 SH12882 12882 MT COX1 COX1ai1 29.771415 198.193486 29.771415 169.422071 99.596743 1.998245136 -0.103904 180 40 SH8833 8833 LSR1 / U2 RNA U2 806 820 1777.583033 2799.680381 2288.631707 3.35957591 -0.354375 180 41 SH16194 16194 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 95.841049 365.444813 95.841049 270.603764 183.2224065 2.262978583 0.021376 180 42 SH10218 10218 RUF6 RUF6 936 953 32.056956 149.426779 90.7418675 1.957807713 0.153264 180 43 SH2379 2379 Phe4 5' flank 28.340357 149.396571 88.868464 1.948747674 -0.10313 180 44 SH20685 20685 YIL111W spliced 30.32165 142.208864 86.265257 1.93583592 0.077615 180 45 SH13065 13065 MT COX1 intronic 27427.79024 47803.04767 27427.79024 20376.25743 23902.02384 4.378434675 0.050971 180 46 SH8953 8953 snR17a / U3a U3a 51 68 34.264272 199.277365 116.7708185 2.067334324 -0.139436 180 47 SH2260 2260 Phe1 3' flank 47.828459 202.428628 125.1285435 2.097356389 0.039801 180 48 SH5359 5359 snR30 3' 44.069119 199.555426 121.8122725 2.085691045 0.019943 180 49 SH7562 7562 snR79 3' 30.641377 150.421776 90.5315765 1.956800083 0.054161 180 50 SH10882 10882 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1296 1313 12557.14067 12359.98262 12458.56164 4.095467905 -0.166205 180 51 SH668 668 Gln2 3' flank 158.411703 322.533003 240.472353 2.381065153 0.200791 180 52 SH9551 9551 RUF3 RUF3 141 157 31.002592 137.987633 84.4951125 1.926831589 0.147871 180 53 SH7343 7343 snR68 5' 29.131039 128.532995 78.832017 1.896702639 0.072577 180 54 SH14115 14115 MT COB intronic 29.176039 182.020128 29.176039 153.844089 91.510064 1.961468859 -0.06576 180 55 SH10695 10695 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 361 378 37.043896 190.014342 113.529119 2.055107268 0.019413 180 56 SH12466 12466 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 29383.08904 52239.23986 29383.08904 22857.15082 26120.11993 4.416975167 -0.042246 180 57 SH12732 12732 MT COX1 Exon1 205.47951 619.029748 205.47951 414.550238 310.014874 2.491382531 0.038782 180 58 SH7897 7897 snoRNA cluster1 intergenic 33.803564 199.238372 33.803564 166.434808 100.119186 2.00051731 0.151615 180 59 SH10973 10973 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1751 1766 26002.56821 22643.96667 24323.26744 4.386021915 -0.185867 180 60 SH5382 5382 snR31 5' 30.686446 157.530918 94.108682 1.973629691 0.019802 180 61 SH9942 9942 RUF5-1 RUF5-1 516 532 40.354297 164.665813 102.510055 2.010766467 0.391805 180 62 SH4400 4400 telomerase RNA telomerase 1036 1054 28.742617 152.713997 90.728307 1.957742807 -0.090848 180 63 SH9277 9277 RUF1 5' 28.820829 170.427643 99.624236 1.998365004 -0.174111 180 64 SH10847 10847 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1121 1138 1906.427074 878.762675 1392.594875 3.143824792 1.560043 180 65 SH28 28 Ala1 tRNA 36 48 2265.541872 2169.535018 2217.538445 3.345871158 0.364937 180 66 SH16032 16032 YDL191W_4_117665_118518_INTRON_4_494 intron 47.018672 251.840111 47.018672 205.821439 126.4200555 2.101815977 -0.008448 180 67 SH8429 8429 snoRNA cluster 5 intergenic 31.352691 198.308689 31.352691 167.955998 99.6543445 1.998496237 0.001669 180 68 SH490 490 Asp2 tRNA 11 28 1197.285444 1482.470197 1339.877821 3.127065198 0.126094 180 69 SH10356 10356 RUF7 RUF7 391 406 59.497861 223.086943 141.292402 2.150118808 -0.014743 180 70 SH4297 4297 telomerase RNA telomerase 521 537 29.552843 148.455256 89.0040495 1.949409767 -0.010245 180 71 SH17686 17686 YKL006W_11_431544_432358_INTRON_130_527 intron 29.531943 176.993482 29.531943 148.461539 88.996741 1.949374103 -0.011748 180 72 SH9731 9731 RUF4 RUF4 431 443 31.467077 182.573851 107.020464 2.02946683 -0.076759 180 73 SH14178 14178 MT COB intron/exon6 33.374104 224.007681 33.374104 191.633577 112.5038405 2.051167348 -0.087998 180 74 SH3768 3768 Val4 66-73 + 3' flank 66 29.330614 147.407011 88.3688125 1.946299019 -0.020349 180 75 SH578 578 Gln1 5' flank 35.164499 160.160297 97.662398 1.989727384 0.264445 180 76 SH14850 14850 MT tRNA Ser2; tRNA Arg2 5' 27.211704 154.53512 27.211704 128.323416 77.76756 1.890798473 -0.066245 180 77 SH14555 14555 MT 21S rRNA 21S rRNA3 36.962348 235.536371 36.962348 199.574023 118.2681855 2.072867934 -0.08905 180 78 SH19892 19892 Positive Control 8 31.016268 185.951231 108.4837495 2.035364687 -0.124975 180 79 SH13031 13031 MT COX1 COX1ai2 32.928148 222.268084 32.928148 190.339936 111.634042 2.04779665 -0.092683 180 80 SH8061 8061 snoRNA cluster 2 intergenic/snR61 32.89189 192.070429 32.89189 160.178539 96.5352145 1.984685766 0.139433 180 81 SH13788 13788 MT COB intronic 34.817932 238.527713 34.817932 204.709781 119.7638565 2.078325772 -0.186671 180 82 SH21353 21353 YPR187W spliced 38.706382 199.187737 118.9470595 2.07535371 -0.054072 180 83 SH13122 13122 MT COX1 COX1ai3 32.837819 196.339393 32.837819 164.501574 98.6696965 1.994183792 0.109301 180 84 SH10621 10621 RUF8 3' 36.754668 182.05969 109.407179 2.03904582 0.107005 180 85 SH9087 9087 snR14 / U4 RNA U4 51 68 30.92922 151.67193 91.300575 1.960473513 0.06686 180 86 SH6914 6914 snR58 5' 30.992584 168.340347 99.6664655 1.998549057 -0.022248 180 87 SH21604 21604 copy of SH6880 38.95189 160.655625 99.8037575 1.999146892 0.394675 180 88 SH13092 13092 MT COX1 COX1ai3 33.19025 193.924337 33.19025 161.734087 97.4621685 1.98883607 0.146495 180 89 SH16925 16925 YGR001C_7_498029_497128_INTRON_36_97 5' exon 53.225989 241.664126 53.225989 189.438137 121.332063 2.083975582 0.257409 180 90 SH12351 12351 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.548369 214.753414 29.548369 186.205045 107.876707 2.032927681 -0.213929 180 91 SH12157 12157 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7671 7689 460.021775 722.266886 591.1443305 2.771693529 0.072095 180 92 SH8564 8564 snR19 / U1 RNA U1 316 332 70.270535 192.670558 131.4705465 2.118828468 0.424368 180 93 SH2305 2305 Phe2 3' flank 34.036465 148.678087 91.357276 1.960743142 0.279076 180 94 SH14450 14450 MT 21S rRNA 21S rRNA3 100.50097 398.667475 100.50097 299.166505 199.8337375 2.300668811 -0.124565 180 95 SH12505 12505 MT_tRNA Pro 3' 30.233413 200.601848 30.233413 171.368435 100.800924 2.003464513 -0.086723 180 96 SH4681 4681 snR4 5' 32.391418 153.741993 93.0667055 1.96879434 0.151741 180 97 SH18957 18957 YOL127W_15_80347_81189_INTRON_14_427 intron 32.515917 181.89025 32.515917 150.374333 91.445125 1.961160558 0.177645 180 98 SH15916 15916 YDL083C_4_307788_306925_INTRON_25_456 intron 30.583858 182.101909 30.583858 152.518051 91.5509545 1.961662877 0.03905 180 99 SH15019 15019 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 32.776358 205.762305 32.776358 173.985947 103.3811525 2.014441369 0.048847 180 100 SH10623 10623 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 1 21 30.821895 182.60978 106.7158375 2.028228877 -0.115238 180 101 SH15677 15677 YBR191W_2_606228_607098_INTRON_12_399 intron 36.1472 227.600491 36.1472 192.453291 114.3002455 2.058047163 -0.0257 180 102 SH9811 9811 RUF4 3' 28.906748 156.69604 92.801394 1.9675545 -0.099884 180 103 SH18290 18290 YML073C_13_124172_123227_INTRON_16_430 5' exon 41.587374 244.278148 41.587374 203.690774 122.639074 2.088628863 -0.062073 180 104 SH15094 15094 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " intronic / orf2exon2 31.0641 185.444437 31.0641 155.380337 93.2222185 1.969519434 0.056322 181 2 SH11025 11025 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2011 2026 297.516544 477.512394 387.514469 2.588287923 0.228055 181 3 SH10895 10895 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1361 1379 913.824976 1229.555419 1071.690198 3.030069258 0.075372 181 4 SH15940 15940 YDL115C_4_255042_253994_INTRON_1_88 3' exon 31.634808 196.074412 31.634808 165.439604 98.537206 1.993600244 0.033753 181 5 SH10614 10614 RUF8 3' 33.33185 146.965949 90.1488995 1.954960429 0.247651 181 6 SH1860 1860 Leu9 tRNA-intron/exon 41 60 31.035573 159.929403 95.482488 1.979923727 0.031039 181 7 SH9783 9783 RUF4 RUF4 691 713 30.7066 150.846847 90.7767235 1.957974503 0.056288 181 8 SH18948 18948 YOL127W_15_80347_81189_INTRON_14_427 intron 32.286552 223.632993 32.286552 192.346441 112.3164965 2.050443548 -0.133951 181 9 SH15946 15946 YDL125C_4_239605_239018_INTRON_98_208 intron 30.027444 180.902152 30.027444 151.874708 90.951076 1.958807841 0.004371 181 10 SH4883 4883 snR8 3' 25.951264 124.740784 75.346024 1.87706034 -0.140206 181 11 SH7521 7521 snR79 5' 27.543515 130.219449 78.881482 1.896975061 -0.053474 181 12 SH1902 1902 Lys1 5' flank 32.818468 149.48898 91.153724 1.959774416 0.201649 181 13 SH21400 21400 Pro8 spliced 84.057498 203.236424 143.646961 2.157296442 0.464465 181 14 SH6240 6240 snR42 5' 30.563763 157.145035 93.854399 1.972454633 0.013476 181 15 SH13728 13728 MT COB Exon1 32.242936 204.262794 32.242936 173.019858 102.631397 2.01128024 0.02383 181 16 SH3308 3308 Thr2 3' flank 33.959776 160.989725 97.4747505 1.988892132 0.194029 181 17 SH21534 21534 copy of SH3940 28.507366 143.660747 86.0840565 1.934922724 -0.060246 181 18 SH17172 17172 YHR021C_8_148660_147862_INTRON_4_553 5' exon 35.70968 209.486748 35.70968 174.777068 105.243374 2.022194763 0.148403 181 19 SH8051 8051 snoRNA cluster 2 intergenic 30.328005 213.515672 30.328005 184.187667 107.257836 2.030429031 -0.154177 181 20 SH12712 12712 MT ORF 8 (hypothetical) ORF8 28.574454 167.289156 28.574454 139.714702 84.144578 1.925026137 -0.03359 181 21 SH6216 6216 snR40 3' 30.448865 180.476474 105.4626695 2.02309876 -0.126062 181 22 SH18670 18670 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.527168 175.153411 30.527168 145.626243 88.0767055 1.944861062 0.072658 181 23 SH15518 15518 YBR048W_2_332790_333771_INTRON_46_556 intron 28.785593 202.288364 28.785593 174.502771 101.644182 2.007082525 -0.196874 181 24 SH11931 11931 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6541 6558 461.358244 837.029907 649.1940755 2.812374548 -0.165782 181 25 SH19806 19806 Negative Control 28.894331 152.479181 90.686756 1.957543867 -0.078676 181 26 SH7443 7443 snR69 3' 28.927104 155.649936 92.28852 1.965147681 -0.092997 181 27 SH7565 7565 snR79 3' 28.037876 166.053176 97.045526 1.986975518 -0.210205 181 28 SH9657 9657 RUF4 RUF4 61 73 39.975836 179.660245 109.8180405 2.04067369 0.195335 181 29 SH1173 1173 His1 3' flank 27.181475 164.664534 95.9230045 1.981922773 -0.267779 181 30 SH11222 11222 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2996 3018 30.89937 142.070765 86.4850675 1.936941129 0.117832 181 31 SH10815 10815 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 961 981 15983.59801 18745.25343 17364.42572 4.239660425 -0.516235 181 32 SH10745 10745 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 611 626 31.047553 165.385888 98.2167205 1.992185429 -0.000946 181 33 SH16766 16766 YGL103W_7_310965_311925_INTRON_50_560 5' exon 34.832565 219.04864 34.832565 185.216075 110.02432 2.041488693 0.020719 181 34 SH11937 11937 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6571 6587 169.019051 456.955573 312.987312 2.495526732 -0.352776 181 35 SH13365 13365 MT COX1 intronic 25.71115 175.086702 25.71115 150.375552 88.043351 1.944696564 -0.313273 181 36 SH9677 9677 RUF4 RUF4 161 177 33.223858 187.89609 110.559974 2.043597928 -0.060167 181 37 SH18636 18636 YNL096C_14_444312_443395_INTRON_145_489 intron 33.311093 192.470095 33.311093 160.159002 96.7350475 1.985583849 0.163232 181 38 SH1320 1320 Ile3 5' flank 30.601227 150.127634 90.3644305 1.955997516 0.053025 181 39 SH3977 3977 RNase MRP RNaseMRP 301 316 33.53288 177.654118 105.593499 2.023637181 0.045507 181 40 SH9398 9398 RUF1 3' 33.667578 148.220831 90.9442045 1.958775028 0.261562 181 41 SH10327 10327 RUF7 RUF7 246 263 31.911723 197.71753 114.8146265 2.059997217 -0.194414 181 42 SH3700 3700 Val3 5' flank 30.136498 170.936418 100.536458 2.002323581 -0.09016 181 43 SH1152 1152 His1 5' flank - tRNA2 2 26.427095 115.42342 70.9252575 1.850800921 -0.038123 181 44 SH9261 9261 snR6 / U6 RNA 3' 30.330615 134.375148 82.3528815 1.9156788 0.122394 181 45 SH1189 1189 Ile1 5' flank 41.935554 216.092396 129.013975 2.110636756 -0.190718 181 46 SH18259 18259 YML056C_13_164176_162194_INTRON_461_868 intron 30.464217 194.864347 30.464217 165.40013 97.9321735 1.990925393 -0.036491 181 47 SH5961 5961 snR36 snR36 261 279 30.527796 151.869874 91.198835 1.959989291 0.038693 181 48 SH702 702 Gln3 tRNA 41 53 44.150008 204.735807 124.4429075 2.094970149 -0.036553 181 49 SH19908 19908 YAL001C spliced 30.689501 171.615962 101.1527315 2.004977615 -0.060199 181 50 SH3974 3974 RNase MRP RNaseMRP 286 298 103.037254 315.737446 209.38735 2.320950441 -0.20172 181 51 SH5447 5447 snR31 3' 30.890188 189.821947 110.3560675 2.042796216 -0.16462 181 52 SH17345 17345 YIL018W_9_316766_317930_INTRON_5_404 intron 29.024487 172.602965 29.024487 144.578478 86.8014825 1.938527143 -0.027346 181 53 SH10931 10931 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1541 1554 44.79349 172.906683 108.8500865 2.036828778 0.356937 181 54 SH3612 3612 Val1 tRNA 56 68 40.895929 173.439714 107.1678215 2.030064402 0.288178 181 55 SH2972 2972 Ser1 3' flank 29.093241 131.419697 80.256469 1.904480048 0.052003 181 56 SH3453 3453 Trp1 96-106 + 3' flank 96 29.039711 131.934008 80.4868595 1.905724982 0.04508 181 57 SH5584 5584 snR33 3' 30.909863 143.430137 87.17 1.940367046 0.110822 181 58 SH11755 11755 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5661 5678 2625.971564 1413.443467 2019.707516 3.305288482 1.230096 181 59 SH18787 18787 YNL301C_14_64561_63569_INTRON_113_544 intron 32.657402 210.559127 32.657402 178.901725 105.7795635 2.024401771 0.002006 181 60 SH17331 17331 YIL018W_9_316766_317930_INTRON_5_404 5' exon 40.349169 235.582321 40.349169 196.233152 118.2911605 2.072952292 0.005025 181 61 SH13113 13113 MT COX1 COX1ai3 28.693745 169.859034 28.693745 142.165289 85.429517 1.931607951 -0.038366 181 62 SH915 915 Glu3 3' flank 28.72236 131.535972 80.129166 1.903790623 0.024381 181 63 SH6185 6185 snR40 5' - 5 -14 5 34.628606 186.442726 110.535666 2.043502432 0.002545 181 64 SH7996 7996 snoRNA cluster 2 intergenic 32.816016 218.887013 32.816016 187.070997 109.9435065 2.041169584 -0.067537 181 65 SH5653 5653 snR34 snR34 186 203 108.638988 298.277247 203.4581175 2.308475022 -0.041506 181 66 SH13490 13490 MT COX1 intronic 31.166743 203.957152 31.166743 173.790409 102.478576 2.010633082 -0.044145 181 67 SH16364 16364 YEL012W_5_131772_132551_INTRON_6_128 intron 31.302874 208.931943 31.302874 178.629069 104.9659715 2.02104853 -0.063899 181 68 SH17694 17694 YKL006W_11_431544_432358_INTRON_130_527 intron 29.423193 183.562944 29.423193 155.139751 92.281472 1.965114513 -0.055048 181 69 SH14302 14302 MT VAR1 includes 5’ processing site VAR1 27.495385 163.793652 27.495385 137.298267 82.396826 1.915910483 -0.100941 181 70 SH17956 17956 YLR185W_12_522665_523290_INTRON_8_366 intron 40.44318 230.193726 40.44318 190.750546 115.596863 2.062946049 0.071179 181 71 SH19210 19210 YPL081W_16_404945_406039_INTRON_8_508 intron 29.477112 187.179528 29.477112 158.702416 94.089764 1.973542379 -0.069641 181 72 SH19862 19862 Negative Control 29.430047 188.955696 109.1928715 2.038194287 -0.236329 181 73 SH17050 17050 YGR214W_7_920570_921783_INTRON_91_545 intron 33.324494 226.454713 33.324494 194.130219 113.7273565 2.055864944 -0.111623 181 74 SH5087 5087 snR11 snR11 36 53 27.325121 137.05556 82.1903405 1.91482078 -0.112249 181 75 SH3125 3125 Ser4 tRNA 31 46 35.141963 147.137453 91.139708 1.959707633 0.349411 181 76 SH5892 5892 snR36 5' 32.122179 193.350093 112.736136 2.052063145 -0.148847 181 77 SH20094 20094 YDL029W spliced 33.054745 172.43903 102.7468875 2.011768675 0.073731 181 78 SH8085 8085 snoRNA cluster 2 3' 29.097126 163.110439 29.097126 135.013313 82.0552195 1.914106212 0.03126 181 79 SH18874 18874 YNR053C_14_723108_721117_INTRON_811_1341 intron 31.035198 185.388404 31.035198 155.353206 93.194202 1.969388894 0.054532 181 80 SH14305 14305 MT VAR1 includes 5’ processing site VAR1 27.107402 184.254471 27.107402 158.147069 92.6272355 1.966738703 -0.241168 181 81 SH20304 20304 YER003C spliced 36.895284 178.485112 107.690198 2.032176175 0.152103 181 82 SH12630 12630 MT_15S MT_15S 29.055518 170.664992 29.055518 142.609474 85.832496 1.933651742 -0.01441 181 83 SH12308 12308 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 38.861547 233.229426 38.861547 195.367879 117.114713 2.068611458 -0.007421 181 84 SH1231 1231 Ile1 3' flank 29.075257 200.778077 114.926667 2.060420812 -0.331845 181 85 SH8767 8767 LSR1 / U2 RNA U2 476 490 80.392328 218.068608 149.230468 2.173857501 0.283515 181 86 SH16825 16825 YGL178W_7_167356_170575_INTRON_4_643 intron 1096.182161 2245.210795 1096.182161 1150.028634 1123.105398 3.050420514 0.416219 181 87 SH11113 11113 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2451 2466 239.190246 469.085203 354.1377245 2.549172192 -0.000578 181 88 SH4636 4636 snR3 snR3 96 112 45.216066 191.292103 118.2540845 2.07281615 0.131649 181 89 SH20714 20714 YJL041W spliced 29.493084 168.845784 99.169434 1.996377835 -0.118706 181 90 SH20226 20226 YDR129C spliced 29.641456 168.659951 99.1507035 1.9962958 -0.107502 181 91 SH635 635 Gln2 5' flank 29.794784 169.430433 99.6126085 1.998314313 -0.102487 181 92 SH13784 13784 MT COB intronic 29.944696 189.527419 29.944696 160.582723 95.2637095 1.978927489 -0.046521 181 93 SH1223 1223 Ile1 3' flank 30.086044 153.296061 91.6910525 1.962326958 0.000871 181 94 SH5365 5365 snR30 3' 32.253501 168.066851 100.160176 2.000695079 0.053952 181 95 SH9020 9020 snR17a / U3a U3a 386 407 32.386253 167.078171 99.732212 1.998835452 0.067625 181 96 SH15205 15205 MT COX3 cox3 36.624112 226.198913 36.624112 190.574801 113.5994565 2.055376254 0.004935 181 97 SH1880 1880 Leu9 3' flank 8790.520286 8388.464952 8589.492619 3.933967511 -0.010842 181 98 SH2873 2873 Pro7 3' flank 32.770292 169.17478 100.972536 2.004203264 0.076992 181 99 SH1999 1999 Lys3 5' flank 30.814909 162.129974 96.4724415 1.98440327 0.005161 181 100 SH2342 2342 Phe3 tRNA-exon/intron 36 53 30.918203 186.417265 108.667734 2.036100611 -0.132993 181 101 SH17373 17373 YIL052C_9_257061_256224_INTRON_38_509 intron 31.003478 183.101716 31.003478 153.098238 92.050858 1.964027841 0.064255 181 102 SH11169 11169 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2731 2746 1108.064558 1785.588493 1446.826526 3.160416462 -0.269352 181 103 SH21586 21586 copy of SH6043 28.990882 155.021566 92.006224 1.963817207 -0.085149 181 104 SH4810 4810 snR5 3' 31.095064 154.080786 92.587925 1.966554351 0.065194 182 2 SH2068 2068 Lys4 tRNA 6 22 36.363299 163.361494 99.8623965 1.999401984 0.284111 182 3 SH21394 21394 Pro2_7 spliced 37.106307 170.842078 103.9741925 2.016925556 0.232788 182 4 SH5552 5552 snR33 snR33 46 65 29.74473 158.881669 94.3131995 1.974572478 -0.051799 182 5 SH2123 2123 Met1 tRNA 1 15 96.463858 226.498961 161.4814095 2.208122532 0.372784 182 6 SH16662 16662 YFR032C-A_6_223758_223245_INTRON_1_331 intron 97.477657 367.331198 97.477657 270.853541 184.165599 2.26520851 0.035812 182 7 SH12136 12136 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7566 7579 56.278827 207.111097 131.694962 2.119569161 0.10075 182 8 SH20004 20004 YBR078W spliced 32.429948 156.240636 94.335292 1.974674198 0.138283 182 9 SH19054 19054 YOR234C_15_779404_778554_INTRON_20_546 intron 33.975725 230.573374 33.975725 197.597649 115.786687 2.063658628 -0.126983 182 10 SH17864 17864 YLL050C_12_40413_39803_INTRON_15_193 intron 31.718322 208.784204 31.718322 178.065882 104.892102 2.020742789 -0.036043 182 11 SH17385 17385 YIL069C_9_232366_231550_INTRON_4_412 exon/intron 31.392792 224.426586 31.392792 194.033794 112.713293 2.051975138 -0.182318 182 12 SH2439 2439 Phe5 5' flank 45.924959 215.700462 130.8127105 2.116649945 -0.128884 182 13 SH615 615 Gln1 3' flank 30.858542 149.528889 90.1937155 1.955176278 0.07364 182 14 SH354 354 Arg5 3' flank 461.250624 770.733397 615.9920105 2.789575079 -0.031107 182 15 SH4469 4469 U3b (snR17b) 5' 30.513772 199.118043 114.8159075 2.060002063 -0.259987 182 16 SH18150 18150 YLR406C_12_931752_931062_INTRON_58_406 intron/exon 28.604451 191.96586 28.604451 164.361409 96.48293 1.984450484 -0.160391 182 17 SH17609 17609 YJL205C-A_10_50443_50139_INTRON_33_175 3' exon 30.350553 194.8801 30.350553 165.529547 97.94005 1.990960321 -0.044273 182 18 SH8844 8844 LSR1 / U2 RNA U2 861 877 50.208282 187.011269 118.6097755 2.074120484 0.248894 182 19 SH3286 3286 Thr2 tRNA 31 43 41.172607 200.326495 120.749551 2.081885525 -0.030029 182 20 SH15765 15765 YCR031C_3_178212_177492_INTRON_8_314 3' exon 30.375434 156.839115 30.375434 127.463681 78.9195575 1.897184642 0.166654 182 21 SH1158 1158 His1 tRNA 11 28 34.053303 180.401424 107.2273635 2.030305628 0.03806 182 22 SH13507 13507 MT COX1 intronic 30.504225 196.292116 30.504225 166.787891 98.646058 1.994079735 -0.042526 182 23 SH19002 19002 YOR122C_15_552886_552297_INTRON_14_222 intron 29.667913 178.822905 29.667913 150.154992 89.9114525 1.953815014 -0.011403 182 24 SH19512 19512 ACT1 34.285845 154.587421 94.436633 1.975140495 0.253123 182 25 SH10173 10173 RUF6 RUF6 711 723 38.91571 188.649325 113.7825175 2.056075539 0.06999 182 26 SH20160 20160 YDL130W spliced 30.741367 177.477226 104.1092965 2.017489512 -0.091163 182 27 SH11226 11226 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3016 3034 30.782128 171.660336 101.221232 2.005271619 -0.054828 182 28 SH17996 17996 YLR287C-A_12_713158_712537_INTRON_4_433 intron 87.979743 377.222329 87.979743 290.242586 189.1111645 2.276717169 -0.195553 182 29 SH19742 19742 Negative Control 36.395646 175.184779 105.7902125 2.024445489 0.167264 182 30 SH3465 3465 Trp1 3' flank 30.9561 178.436948 104.696524 2.019932263 -0.08363 182 31 SH20811 20811 YKL186C spliced 31.040344 182.266183 106.6532635 2.027974149 -0.100122 182 32 SH20710 20710 YJL024C spliced 31.129635 185.266672 108.1981535 2.034219849 -0.114381 182 33 SH16259 16259 YDR424C_4_1319830_1319376_INTRON_26_121 exon/intron 31.215117 199.701579 31.215117 169.486462 100.3507895 2.001520794 -0.015768 182 34 SH4022 4022 SRP RNA SRP RNA 1 17 31.29044 163.302072 97.296256 1.988096129 0.026504 182 35 SH19407 19407 YPR098C_16_729525_728944_INTRON_48_143 exon/intron 29.491728 171.037142 29.491728 142.545414 86.018571 1.934592223 0.017324 182 36 SH11229 11229 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3031 3054 27.681804 168.669383 98.1755935 1.992003535 -0.249393 182 37 SH332 332 Arg5 5' flank - tRNA10 5' flank 10 38.967604 188.020133 113.4938685 2.054972399 0.078209 182 38 SH21692 21692 copy of SH10452 29.678129 183.170554 106.4243415 2.027040972 -0.189044 182 39 SH19833 19833 Negative Control 35.412647 179.704145 107.558396 2.031644317 0.091484 182 40 SH5175 5175 snR13 snR13 31 47 60.178928 203.94835 132.063639 2.12078326 0.184319 182 41 SH1595 1595 Leu4 3' flank 39.483692 197.13296 118.308326 2.073015309 -0.018443 182 42 SH13308 13308 MT COX1 COX1-ai5a 28.224353 176.220687 28.224353 148.996334 88.6103435 1.94748442 -0.109678 182 43 SH20881 20881 YLR211C spliced 28.335753 143.098771 85.717262 1.93306829 -0.069908 182 44 SH16473 16473 YER102W_5_362729_363698_INTRON_1_360 intron 51.484503 255.702532 51.484503 205.218029 128.351266 2.108400157 0.058686 182 45 SH3022 3022 Ser2 71-82 + 3' flank 71 36.211666 164.225662 100.218664 2.000948609 0.270203 182 46 SH3681 3681 Val2 3' flank 30.522523 160.881437 95.70198 1.980920923 -0.008362 182 47 SH20932 20932 YLR388W spliced 38.333618 191.728637 115.0311275 2.060815377 0.024065 182 48 SH20031 20031 YBR181C spliced 32.61221 158.747409 95.6798095 1.980820302 0.132588 182 49 SH6372 6372 snR43 snR43 101 116 32.696626 183.936573 108.3165995 2.034695017 -0.04339 182 50 SH18662 18662 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.833712 206.303504 30.833712 176.469792 103.651752 2.015576647 -0.079772 182 51 SH20526 20526 YGR118W spliced 38.720202 246.580417 142.6503095 2.154272718 -0.538359 182 52 SH18068 18068 YLR344W_12_819312_820142_INTRON_20_466 intron 48.599324 241.985484 48.599324 194.38616 121.492742 2.084550334 0.141174 182 53 SH17984 17984 YLR275W_12_694378_694800_INTRON_6_95 exon/intron 29.03478 160.647845 29.03478 132.613065 80.8239225 1.907539924 0.040722 182 54 SH16781 16781 YGL103W_7_310965_311925_INTRON_50_560 intron 29.032965 159.060665 29.032965 131.0277 80.0303325 1.903254621 0.049963 182 55 SH17053 17053 YGR214W_7_920570_921783_INTRON_91_545 intron 30.954694 211.009162 30.954694 181.054468 106.004581 2.025324634 -0.098511 182 56 SH21748 21748 copy of SH12763 34.796403 175.554148 105.1752755 2.021913658 0.109881 182 57 SH5132 5132 snR11 3' 27.890654 121.011483 74.4510685 1.871870935 0.033061 182 58 SH1349 1349 Ile3 126-133 + 3' flank 126 140 34.605511 168.503758 101.5546345 2.006699747 0.172459 182 59 SH11076 11076 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2266 2283 549.259826 681.541126 615.400476 2.789157828 0.388299 182 60 SH167 167 Arg2 5' flank 28.662488 177.369307 103.0158975 2.012904251 -0.22144 182 61 SH1848 1848 Leu9 5' flank 32.518037 188.011652 110.2648445 2.042437069 -0.086928 182 62 SH3388 3388 Thr4 tRNA 26 43 28.68603 160.916446 94.801238 1.976814009 -0.137321 182 63 SH3493 3493 Tyr1 tRNA 6 20 59.915827 199.366609 129.641218 2.112743103 0.229313 182 64 SH7985 7985 snoRNA cluster 2 snR57 36.663448 188.174857 36.663448 152.511409 94.5874285 1.975833419 0.392198 182 65 SH21734 21734 copy of SH12339 34.867341 191.156177 113.011759 2.053123635 -0.036476 182 66 SH10304 10304 RUF7 RUF7 131 147 31.092638 185.288933 108.1907855 2.034190274 -0.116008 182 67 SH10103 10103 RUF6 RUF6 361 378 29.244002 146.740261 87.9921315 1.944443838 -0.023044 182 68 SH15302 15302 YAL001C_1_151163_147591_INTRON_71_160 5'exon 29.329572 174.584218 29.329572 146.254646 87.792109 1.943455482 -0.014307 182 69 SH12844 12844 MT COX1 COX1ai1 29.378175 199.700895 29.378175 171.32272 100.3504475 2.001519314 -0.140095 182 70 SH8556 8556 snR19 / U1 RNA U1 276 292 37.318366 157.227942 97.273154 1.987992998 0.379746 182 71 SH12647 12647 MT_15S MT_15S 29.369071 183.602887 29.369071 155.233816 92.3014435 1.965208493 -0.05936 182 72 SH17417 17417 YIL111W_9_155219_155762_INTRON_2_89 5' exon 29.327131 171.642365 29.327131 143.315234 86.3211825 1.936117381 0.001339 182 73 SH6030 6030 snR37 snR37 66 84 27.304073 144.100175 85.702124 1.932991585 -0.153454 182 74 SH20523 20523 YGR118W spliced 33.162114 177.601418 105.381766 2.022765472 0.032688 182 75 SH504 504 Asp2 3' flank 29.180509 177.45416 103.3173345 2.014173193 -0.188442 182 76 SH17538 17538 YJL177W_10_90783_91654_INTRON_310_626 intron 31.115344 221.335002 31.115344 191.219658 111.167501 2.045977843 -0.1683 182 77 SH20262 20262 YDR397C spliced 35.030619 183.877458 109.4540385 2.03923179 0.039751 182 78 SH13325 13325 MT COX1 COX1-ai5a 31.102274 180.837143 31.102274 150.734869 90.9185715 1.958652604 0.08346 182 79 SH1381 1381 Leu1 5' flank 31.115357 173.898437 102.506897 2.010753087 -0.047861 182 80 SH20579 20579 YHR016C spliced 79.561821 256.370784 167.9663025 2.225222162 -0.048364 182 81 SH11846 11846 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6116 6133 167.601145 315.876363 241.738754 2.383346279 0.298668 182 82 SH14242 14242 MT tRNA Ser tRNA 44.991316 217.524189 44.991316 173.532873 109.2620945 2.038469521 0.35132 182 83 SH16093 16093 YDR025W_4_491510_492319_INTRON_46_384 3' exon 35.150045 221.487026 35.150045 187.336981 111.243513 2.046274695 0.012374 182 84 SH15118 15118 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 3' 29.264358 181.160252 29.264358 152.895894 91.080126 1.959423623 -0.054479 182 85 SH3962 3962 RNase MRP RNaseMRP 226 240 31.276016 167.744215 99.5101155 1.99786723 -0.001626 182 86 SH9314 9314 RUF1 RUF1 146 163 35.292751 166.414693 100.853722 2.00369193 0.217067 182 87 SH695 695 Gln3 tRNA 6 23 63.274711 199.477817 131.376264 2.118516907 0.269517 182 88 SH19978 19978 YBL087C spliced 33.506566 157.35128 95.428923 1.979680022 0.192139 182 89 SH17220 17220 YHR041C_8_189855_189122_INTRON_15_115 intron 31.639836 188.942459 31.639836 158.302623 94.9712295 1.97759206 0.078853 182 90 SH21410 21410 Ser3 spliced 33.785705 170.833987 102.309846 2.009917431 0.120562 182 91 SH12198 12198 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7876 7894 37.977362 191.553061 114.7652115 2.059810261 0.019454 182 92 SH18850 18850 YNL312W_14_48286_49215_INTRON_8_115 3' exon 78.889868 323.265888 78.889868 245.37602 162.132944 2.209871269 0.030918 182 93 SH14071 14071 MT COB Cytbi4 32.214483 219.734376 32.214483 188.519893 110.367188 2.042839977 -0.102719 182 94 SH10843 10843 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1101 1123 355.996799 584.542522 470.2696605 2.672346961 0.105938 182 95 SH2579 2579 Pro2 3' flank 32.484553 171.380624 101.9325885 2.008313053 0.047458 182 96 SH14131 14131 MT COB intronic 30.555191 194.64814 30.555191 165.092949 97.82407 1.990445728 -0.029028 182 97 SH9375 9375 RUF1 RUF1 451 467 36.879299 179.760117 108.319708 2.034707481 0.137084 182 98 SH11359 11359 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3681 3698 3042.565467 3913.587448 3478.076458 3.541339125 -0.175188 182 99 SH16807 16807 YGL137W_7_249872_252741_INTRON_19_218 intron 30.894525 201.78376 30.894525 171.889235 101.39188 2.006003176 -0.049369 182 100 SH5751 5751 snR35 5' 30.986955 159.938551 95.462753 1.979833955 0.027739 182 101 SH6749 6749 snR50 5' 28.963574 158.644317 93.8039455 1.972221106 -0.105818 182 102 SH7575 7575 snR189 5' 29.005365 128.246685 78.626025 1.89556632 0.065534 182 103 SH12174 12174 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7756 7773 46.989349 191.449475 119.219412 2.076346976 0.154016 182 104 SH21563 21563 copy of SH4993 48.089725 216.556846 132.3232855 2.121636276 -0.106413 183 2 SH10689 10689 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 331 349 28.241471 160.938271 94.589871 1.975844633 -0.169844 183 3 SH19022 19022 YOR182C_15_678792_678190_INTRON_4_414 intron 32.12936 199.504976 32.12936 168.375616 100.252488 2.001095159 0.044878 183 4 SH6097 6097 snR37 3' 27.836707 138.572528 83.2046175 1.920147428 -0.082283 183 5 SH7106 7106 snR63 snR63 36 54 29.594089 152.404065 90.999077 1.959036987 -0.028617 183 6 SH13760 13760 MT COB intronic 29.310476 181.551284 29.310476 153.240808 91.275642 1.960354896 -0.053037 183 7 SH14199 14199 MT COB Exon6 30.964847 170.992355 30.964847 141.027508 85.9961775 1.934479147 0.128195 183 8 SH15908 15908 YDL083C_4_307788_306925_INTRON_25_456 intron 30.628733 185.598038 30.628733 155.969305 93.299019 1.969877077 0.023966 183 9 SH166 166 Arg2 5' flank 34.119829 142.980625 88.550227 1.947189679 0.318412 183 10 SH10442 10442 RUF8 RUF8 136 152 31.854099 176.599183 104.226641 2.017978742 -0.019655 183 11 SH2066 2066 Lys4 5' flank - tRNA12 12 33.400545 151.477272 92.4389085 1.965854809 0.224869 183 12 SH9935 9935 RUF5-1 RUF5-1 481 499 29.375261 140.352758 84.8640095 1.928723547 0.021071 183 13 SH4169 4169 SRP RNA 3' 762.276457 1008.151493 885.213975 2.947048262 0.163698 183 14 SH13691 13691 MT ORF 5 (hypothetical) ORF5 / 3' 25.286699 148.415067 25.286699 124.128368 74.7075335 1.873364398 -0.189284 183 15 SH9117 9117 snR14 / U4 RNA 3' 26.967874 123.281016 75.124445 1.875781277 -0.051534 183 16 SH9916 9916 RUF5-1 RUF5-1 386 405 30.48324 151.14582 90.81453 1.95815534 0.039533 183 17 SH1122 1122 Gly4 3' flank 30.40482 142.700449 86.5526345 1.937280292 0.080694 183 18 SH11909 11909 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6431 6448 7420.010406 5151.079175 6285.544791 3.798342925 0.545819 183 19 SH18304 18304 YML073C_13_124172_123227_INTRON_16_430 intron 103.684193 411.958542 103.684193 309.274349 206.479271 2.314876458 -0.156397 183 20 SH7247 7247 snR65 snR65 11 33 28.579836 163.02646 95.803148 1.98137978 -0.155571 183 21 SH857 857 Glu2 tRNA 51 63 34.052343 163.492129 98.772236 1.994634885 0.183447 183 22 SH13312 13312 MT COX1 COX1-ai5a 37.753414 229.255886 37.753414 192.502472 115.127943 2.061180745 0.004502 183 23 SH14236 14236 MT tRNA Ser 5' 40.569791 209.994326 40.569791 170.424535 105.497163 2.023240781 0.320709 183 24 SH9244 9244 snR6 / U6 RNA U6 91 110 34.274452 179.59908 106.936766 2.029127046 0.053336 183 25 SH18587 18587 YNL050C_14_534978_534075_INTRON_18_108 intron 28.869053 167.042242 28.869053 139.173189 84.021121 1.924388472 -0.008961 183 26 SH3720 3720 Val3 3' flank 28.921016 148.416328 88.668672 1.947770204 -0.055285 183 27 SH17145 17145 YHR010W_8_126513_127484_INTRON_32_592 3' exon 32.633767 187.843764 32.633767 156.209997 94.421882 1.975072652 0.150195 183 28 SH2598 2598 Pro3 5' flank 29.030855 172.842846 100.9368505 2.004049749 -0.171303 183 29 SH14300 14300 MT VAR1 includes 5’ processing site VAR1 27.263387 184.364388 27.263387 158.101001 92.682194 1.966996306 -0.228856 183 30 SH13329 13329 MT COX1 COX1-ai5a 29.182127 184.16359 29.182127 155.981463 92.581795 1.966525597 -0.076504 183 31 SH20237 20237 YDR305C spliced 29.271848 158.59952 93.935684 1.972830602 -0.083618 183 32 SH3916 3916 RNase MRP 5' - 12 12 31.215876 171.211911 101.2138935 2.005240132 -0.026013 183 33 SH14912 14912 MT tRNA Tyr 5' / tRNA 27.581883 187.099537 27.581883 160.517654 94.0497685 1.973357731 -0.216768 183 34 SH10805 10805 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 911 929 12372.95213 13831.5853 13102.26872 4.117346502 -0.364306 183 35 SH1865 1865 Leu9 tRNA 66 80 70.822366 223.600414 147.21139 2.167941413 0.124218 183 36 SH2040 2040 Lys3 3' flank 33.330016 185.410171 109.3700935 2.038898583 -0.033871 183 37 SH3711 3711 Val3 tRNA 36 48 143.705392 376.905887 260.3056395 2.415483577 -0.186462 183 38 SH21887 21887 copy of SH18602 27.811336 145.969699 86.8905175 1.938972384 -0.124731 183 39 SH8220 8220 snoRNA cluster 3; snR51 31.641471 226.534428 31.641471 195.892957 113.767214 2.056017123 -0.188958 183 40 SH5913 5913 snR36 snR36 21 40 72.502972 284.052776 178.277874 2.251097446 -0.335298 183 41 SH13717 13717 MT tRNAGlu (and 5' processing site for COB) 3' 29.983671 171.926538 29.983671 142.942867 86.463269 1.936831651 0.049995 183 42 SH18292 18292 YML073C_13_124172_123227_INTRON_16_430 exon/intron 30.115771 184.735024 30.115771 155.619253 92.867512 1.967863811 -0.009265 183 43 SH19816 19816 Negative Control 31.203514 167.571914 99.387714 1.997332702 -0.00492 183 44 SH4876 4876 snR8 snR8 161 175 38.052136 192.076836 115.064486 2.060941302 0.014899 183 45 SH12333 12333 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.41192 238.039627 32.41192 206.627707 119.5198135 2.077439907 -0.257641 183 46 SH8050 8050 snoRNA cluster 2 intergenic 30.587292 218.06508 30.587292 188.477788 109.53254 2.039543159 -0.164433 183 47 SH3160 3160 Ser5 5' flank 28.741 145.465429 87.1032145 1.940034183 -0.052784 183 48 SH20187 20187 YDL219W spliced 30.757321 157.678727 94.218024 1.974133992 0.02383 183 49 SH16196 16196 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 28.882733 157.792971 28.882733 129.910238 79.3964855 1.899801279 0.046139 183 50 SH6994 6994 snR60 snR60 51 72 34.789122 215.738868 125.263995 2.097826258 -0.301543 183 51 SH335 335 Arg5 tRNA 11 25 131.549624 297.928921 214.7392725 2.331911477 0.153689 183 52 SH12394 12394 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 48.576014 220.598845 48.576014 173.022831 110.7994225 2.044537497 0.404054 183 53 SH21682 21682 copy of SH10032 27.03447 136.982314 82.008392 1.913858296 -0.1338 183 54 SH1277 1277 Ile2 tRNA-intron 81 97 30.905796 170.193824 100.54981 2.002381254 -0.038616 183 55 SH21819 21819 copy of SH15999 117.714503 265.265056 191.4897795 2.282145599 0.26005 183 56 SH11685 11685 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5311 5331 188.675645 368.879569 278.777607 2.445257886 0.148901 183 57 SH5335 5335 snR30 snR30 526 542 32.636915 149.248932 90.9429235 1.958768911 0.191438 183 58 SH11957 11957 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6671 6684 1012.451016 1187.96325 1100.207133 3.041474456 0.262076 183 59 SH5347 5347 snR30 586-601+3' 586 36.360961 210.021835 123.191398 2.090580384 -0.212621 183 60 SH2481 2481 Phe5 3' flank 34.390183 179.721243 107.055713 2.029609848 0.056227 183 61 SH1387 1387 Leu1 tRNA 6 18 51778.23994 28560.73996 40169.48995 4.603896317 0.339395 183 62 SH20560 20560 YHR001W-A spliced 271.593927 467.759355 369.676641 2.567822009 0.154178 183 63 SH16643 16643 YFR024C-A_6_203420_201947_INTRON_48_165 3' exon 34.524094 167.738573 34.524094 134.214479 84.3692865 1.926184376 0.394111 183 64 SH3738 3738 Val4 5' flank 30.753762 162.50732 96.630541 1.985114411 -0.00088 183 65 SH18952 18952 YOL127W_15_80347_81189_INTRON_14_427 intron 32.825472 183.990668 32.825472 152.165196 92.495334 1.966119825 0.187718 183 66 SH5399 5399 snR31 snR31 61 77 68.373987 223.709285 146.041636 2.164476689 0.093204 183 67 SH7753 7753 snoRNA cluster1 snR76 262.571225 792.896194 262.571225 531.324969 396.948097 2.598733724 -0.101867 183 68 SH3402 3402 Thr4 3' flank 31.166678 108.254201 69.7104395 1.843297821 0.353793 183 69 SH15204 15204 MT COX3 cox3 29.232656 211.569422 29.232656 183.336766 106.284711 2.026470796 -0.218238 183 70 SH16120 16120 YDR064W_4_579453_580447_INTRON_22_560 intron 31.204768 194.56952 31.204768 164.364752 97.78476 1.990271174 0.014789 183 71 SH18677 18677 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.212202 191.24278 29.212202 163.030578 96.12139 1.982820042 -0.110173 183 72 SH11659 11659 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5181 5196 10755.94047 8726.30002 9741.120245 3.988608904 0.187398 183 73 SH7915 7915 snoRNA cluster1 intergenic/snR72 31.101768 185.48609 31.101768 155.384322 93.243045 1.969616448 0.058817 183 74 SH20015 20015 YBR084C-A spliced 31.070925 177.889196 104.4800605 2.019033415 -0.073585 183 75 SH10242 10242 RUF6 3' 29.097038 143.992763 86.5449005 1.937241483 -0.018925 183 76 SH1229 1229 Ile1 3' flank 31.064978 167.560529 99.3127535 1.997005023 -0.013169 183 77 SH5239 5239 snR30 snR30 46 60 31.093565 166.512643 98.803104 1.994770589 -0.005076 183 78 SH11807 11807 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5921 5938 5648.244528 4763.436903 5205.840716 3.716490876 0.316859 183 79 SH16985 16985 YGR118W_7_726968_727725_INTRON_66_385 exon/intron 31.197728 206.505845 31.197728 176.308117 103.7529225 2.016000339 -0.056901 183 80 SH21847 21847 copy of SH17382 29.28793 182.724115 106.0060225 2.025330539 -0.211306 183 81 SH5002 5002 snR10 snR10 41 55 31.323617 169.15313 100.2383735 2.001034011 -0.007281 183 82 SH6323 6323 snR42 3' 29.400739 147.184061 88.2924 1.945923322 -0.01414 183 83 SH8808 8808 LSR1 / U2 RNA U2 681 695 29.449546 168.316615 98.8830805 1.995121988 -0.119229 183 84 SH6772 6772 snR50 snR50 36 55 29.495156 136.88863 83.191893 1.920081007 0.049125 183 85 SH20120 20120 YDL079C spliced 204.10014 360.010043 282.0550915 2.450333944 0.27964 183 86 SH1246 1246 Ile2 5' flank 43.577684 179.566939 111.5723115 2.047556431 0.254049 183 87 SH15237 15237 MT COX3 3' 29.661267 181.043522 29.661267 152.382255 91.021761 1.959145234 -0.023795 183 88 SH8303 8303 snoRNA cluster4 intergenic 29.740492 205.359666 29.740492 176.619174 103.179833 2.013594821 -0.148115 183 89 SH17642 17642 YJR145C_10_702761_701720_INTRON_15_270 intron 62.115263 286.543678 62.115263 225.428415 143.771839 2.157673828 -0.001254 183 90 SH14349 14349 MT ORF9 and ORF10 (hypothetical) 5' 27.921449 158.060407 27.921449 131.138958 79.5302035 1.900532094 -0.031277 183 91 SH14476 14476 MT 21S rRNA 21S rRNA3 30.047724 174.364135 30.047724 145.316411 87.6820675 1.942910782 0.041531 183 92 SH6208 6208 snR40 3' 28.131154 112.99059 70.560872 1.848563939 0.107784 183 93 SH8358 8358 snoRNA cluster4 3' 37.421878 208.475449 37.421878 172.053571 104.7377245 2.020103134 0.231008 183 94 SH15116 15116 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " orf 3 / 3' 30.391566 203.436241 30.391566 174.044675 102.2181205 2.009527891 -0.092714 183 95 SH12206 12206 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7916 7936 36.676264 212.588526 124.632395 2.095630941 -0.235199 183 96 SH13909 13909 MT COB Cytbi3 30.619818 187.578773 30.619818 157.958955 94.2893865 1.97446281 0.013093 183 97 SH8825 8825 LSR1 / U2 RNA U2 766 787 28.662108 116.649519 72.6558135 1.86127037 0.1196 183 98 SH14614 14614 MT 21S rRNA Sce1 endonuc 28.761621 180.62592 28.761621 152.864299 90.81296 1.958147832 -0.090274 183 99 SH11227 11227 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3021 3041 35.111269 160.106594 97.6089315 1.989489559 0.261953 183 100 SH16488 16488 YER102W_5_362729_363698_INTRON_1_360 intron/exon 34.160513 207.189538 34.160513 174.029025 104.094769 2.017428906 0.10251 183 101 SH2206 2206 Phe1 5' flank 31.08297 152.393017 91.7379935 1.962549237 0.073309 183 102 SH20255 20255 YDR381W spliced 31.121896 158.352533 94.7372145 1.976520611 0.044831 183 103 SH16505 16505 YER117W_5_396765_397649_INTRON_43_513 intron 29.027021 201.937249 29.027021 173.910228 101.4686245 2.006331773 -0.177804 183 104 SH16490 16490 YER102W_5_362729_363698_INTRON_1_360 3' exon 37.470404 231.069885 37.470404 194.599481 116.0349425 2.064588791 -0.024418 184 2 SH13630 13630 MT ATP6 ATP6 28.320985 183.280384 28.320985 155.959399 92.140192 1.964449113 -0.138552 184 3 SH10271 10271 RUF7 5' 32.224665 199.955994 116.0903295 2.064796044 -0.201721 184 4 SH9103 9103 snR14 / U4 RNA U4 131 148 40.093614 171.026943 105.5602785 2.023500527 0.304671 184 5 SH5687 5687 snR34 snR34 356 372 51.827739 221.194226 136.5109825 2.135167592 -0.101517 184 6 SH13024 13024 MT COX1 COX1ai2 31.390858 202.263848 31.390858 171.87299 101.631924 2.007030147 -0.019479 184 7 SH16851 16851 YGL183C_7_157071_156547_INTRON_4_86 intron 31.068275 215.117063 31.068275 185.048788 108.0585315 2.033659061 -0.114759 184 8 SH6499 6499 snR46 5' - 3 -14 3 37.538439 192.141815 114.840127 2.060093664 0.004546 184 9 SH11241 11241 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3091 3108 38081.95213 30330.35525 34206.15369 4.534104243 -0.154922 184 10 SH16677 16677 YGL030W_7_439087_439634_INTRON_4_233 5' exon 38.62674 230.531375 38.62674 192.904635 115.7656875 2.063579855 0.016136 184 11 SH2353 2353 Phe3 91 + 3' flank 91 31.639877 143.078409 87.359143 1.941308365 0.161255 184 12 SH15852 15852 YDL075W_4_322225_322987_INTRON_58_478 3' exon 35.069938 234.539804 35.069938 200.469866 117.769902 2.071034314 -0.135987 184 13 SH10292 10292 RUF7 RUF7 71 86 31.081464 183.540973 107.3112185 2.030645126 -0.104729 184 14 SH15589 15589 YBR084C-A_2_415219_414144_INTRON_3_508 intron/exon 109.926491 386.0945 109.926491 277.168009 193.54725 2.286787005 0.10896 184 15 SH17721 17721 YKL156W_11_158616_159214_INTRON_4_353 5' exon 35.248815 221.717089 35.248815 187.468274 111.3585445 2.046723546 0.01365 184 16 SH9130 9130 snR7 U5 RNA 5' 34.185969 169.413465 101.799717 2.007746571 0.148761 184 17 SH5623 5623 snR34 snR34 36 53 37.708638 166.259063 101.9838505 2.008531405 0.297963 184 18 SH16116 16116 YDR064W_4_579453_580447_INTRON_22_560 intron 34.022843 209.700117 34.022843 176.677274 105.3500585 2.022634781 0.072188 184 19 SH15282 15282 MT 9S rRNA 9S 39.432552 231.235727 39.432552 192.803175 116.1178635 2.064899036 0.031532 184 20 SH11660 11660 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5186 5199 48.520916 201.470711 124.9958135 2.096895467 0.059607 184 21 SH11844 11844 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6106 6124 198.10547 417.4599 307.782685 2.488244184 -0.014853 184 22 SH13014 13014 MT COX1 COX1ai2 28.695741 210.650772 28.695741 182.955031 105.825386 2.024589861 -0.250775 184 23 SH2911 2911 Pro8 tRNA 76 88 54.270976 221.82475 138.047863 2.140029688 -0.072768 184 24 SH9043 9043 snR17a / U3a 3' 28.82604 139.989252 84.407646 1.926381789 -0.016658 184 25 SH3342 3342 Thr3 tRNA 56 71 1659.121661 3575.337401 2617.229531 3.417841812 -0.828091 184 26 SH7458 7458 snR71 5' 34.440626 178.017644 106.229135 2.026243645 0.074054 184 27 SH9992 9992 RUF5-1 766-775 + 3' 766 32.682554 165.743309 99.2129315 1.996568282 0.0928 184 28 SH20770 20770 YKL002W spliced 38.2844 199.096568 118.690484 2.074415901 -0.059605 184 29 SH19450 19450 CYC1 36.546451 169.890935 103.218693 2.013758356 0.223997 184 30 SH10142 10142 RUF6 RUF6 556 573 1852.46213 2914.979984 2383.721057 3.377255433 -0.36298 184 31 SH970 970 Gly1 3' flank 29.357221 157.276657 93.316939 1.969960485 -0.070789 184 32 SH14135 14135 MT COB intronic 31.306648 170.398188 31.306648 140.09154 85.699094 1.932976231 0.156372 184 33 SH16470 16470 YER102W_5_362729_363698_INTRON_1_360 exon/intron 31.384918 197.251452 31.384918 166.866534 99.125726 1.996186381 0.010202 184 34 SH266 266 Arg4 5' flank 31.440397 160.258714 95.8495555 1.981590103 0.054555 184 35 SH13306 13306 MT COX1 COX1-ai5a 31.474294 197.264485 31.474294 166.790191 99.1322425 1.996214931 0.015983 184 36 SH21043 21043 YMR133W spliced 31.495594 193.179465 112.3375295 2.050524869 -0.170955 184 37 SH2673 2673 Pro4 tRNA-exon/intron 31 45 42.776966 172.73195 107.754458 2.032435247 0.328899 184 38 SH20571 20571 YHR010W spliced 161.603368 369.445739 265.5245535 2.424104687 -0.023986 184 39 SH21912 21912 copy of SH19565 35.387375 173.679724 104.5335495 2.019255697 0.148169 184 40 SH9787 9787 RUF4 RUF4 711 733 31.72623 190.553346 111.139788 2.045869564 -0.139118 184 41 SH5201 5201 snR13 3' 29.962774 149.28277 89.622772 1.952418372 0.013841 184 42 SH3625 3625 Val1 3' flank 26.30412 180.794535 103.5493275 2.015147283 -0.411573 184 43 SH18198 18198 YML024W_13_225889_226697_INTRON_4_401 intron 30.249546 202.306338 30.249546 173.056792 101.653169 2.007120922 -0.095687 184 44 SH8832 8832 LSR1 / U2 RNA U2 801 817 256.696555 499.018881 377.857718 2.577328297 -0.02264 184 45 SH1066 1066 Gly3 66-71 + 3' flank 66 28.60174 158.327358 93.464549 1.970646915 -0.130288 184 46 SH17867 17867 YLL050C_12_40413_39803_INTRON_15_193 intron 32.583663 158.309398 32.583663 126.725735 79.654699 1.901211401 0.318977 184 47 SH3347 3347 Thr3 3' flank 30.752055 140.170179 85.461117 1.931768565 0.118552 184 48 SH18939 18939 YOL121C_15_92849_92025_INTRON_21_410 3' exon 35.707657 228.223577 35.707657 193.51592 114.6117885 2.05922929 -0.046348 184 49 SH21471 21471 copy of SH1241 32.852842 175.972107 104.4124745 2.018752388 0.037016 184 50 SH21704 21704 copy of SH11079 30.940961 191.030161 110.985561 2.045266482 -0.173359 184 51 SH20511 20511 YGR029W spliced 36.820745 206.297663 121.559204 2.084787848 -0.164194 184 52 SH3978 3978 RNase MRP RNaseMRP 306 323 28.98326 139.339934 84.161597 1.925113968 -0.001579 184 53 SH401 401 Asn1 3' flank 26.993565 113.996507 70.495036 1.848158537 0.015749 184 54 SH17897 17897 YLR061W_12_263195_263949_INTRON_13_401 5' exon 30.827365 212.076338 30.827365 182.248973 106.538169 2.027505229 -0.112897 184 55 SH3277 3277 Thr2 5' flank - tRNA4 4 48.270952 185.367386 116.819169 2.067514113 0.243752 184 56 SH3259 3259 Thr1 3' flank 30.666622 141.707029 86.1868255 1.935440885 0.104195 184 57 SH16389 16389 YER044C-A_5_239773_238459_INTRON_64_151 5' exon 37.359632 225.628809 37.359632 189.269177 113.3144045 2.054285121 0.033975 184 58 SH4006 4006 SRP RNA 5' 30.52576 170.907053 100.7164065 2.003100222 -0.065994 184 59 SH19079 19079 YOR293W_15_867094_867848_INTRON_53_489 intron 30.4829 215.623252 30.4829 186.140352 108.311626 2.034675076 -0.155368 184 60 SH12124 12124 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7506 7524 32.391823 180.372079 106.381951 2.026867951 -0.021588 184 61 SH2894 2894 Pro8 5' flank - tRNA7 7 75.018461 236.971065 155.994763 2.193110019 0.056013 184 62 SH13954 13954 MT COB Cytbi3 28.595585 169.42664 28.595585 141.831055 85.21332 1.930507486 -0.043749 184 63 SH119 119 Arg1 5' flank 44.153956 193.567633 118.8607945 2.075038629 0.09036 184 64 SH13972 13972 MT COB Cytbi3 28.747236 194.763384 28.747236 167.016148 97.881692 1.990701468 -0.163037 184 65 SH15853 15853 YDL075W_4_322225_322987_INTRON_58_478 3' exon 32.729504 205.441789 32.729504 173.712285 103.2208945 2.013767618 0.047772 184 66 SH17031 17031 YGR183C_7_859471_859058_INTRON_4_216 intron 94.642586 332.808098 94.642586 239.165512 166.904049 2.222466873 0.248528 184 67 SH11008 11008 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1926 1939 8849.632726 6917.34611 7883.489418 3.896718489 0.304716 184 68 SH16219 16219 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 30.996356 217.658785 30.996356 187.662429 109.3293925 2.038736935 -0.141202 184 69 SH8379 8379 snoRNA cluster 5 5' 29.05342 167.2288 29.05342 139.17538 84.1144 1.924870351 0.004434 184 70 SH20026 20026 YBR119W spliced 31.000301 168.563194 99.7817475 1.999051106 -0.023127 184 71 SH744 744 Gln4 5' flank - tRNA12 12 34.887063 175.113251 105.000157 2.021189948 0.117241 184 72 SH20524 20524 YGR118W spliced 70.207813 232.419485 151.313649 2.179878105 0.038177 184 73 SH4308 4308 telomerase RNA telomerase 576 592 30.918255 182.695326 106.8067905 2.028598865 -0.109879 184 74 SH8391 8391 snoRNA cluster 5 snR190 74.083967 254.008175 74.083967 180.924208 127.5040875 2.105524108 0.597669 184 75 SH6102 6102 snR37 3' 142.235632 272.377585 207.3066085 2.316613147 0.400666 184 76 SH19521 19521 ACT1 30.988104 163.46718 97.227642 1.987789753 0.007327 184 77 SH6699 6699 snR49 snR49 21 36 34.989481 160.729037 97.859259 1.990601923 0.251516 184 78 SH19384 19384 YPR043W_16_654161_654842_INTRON_3_405 intron 44.959722 238.97416 44.959722 195.014438 119.98708 2.079134484 0.084447 184 79 SH17426 17426 YIL133C_9_99416_98527_INTRON_32_321 5' exon 45.115375 261.275409 45.115375 217.160034 131.1377045 2.117727577 -0.15536 184 80 SH19165 19165 YPL075W_16_412249_415357_INTRON_9_759 3' exon 29.399451 170.856419 29.399451 142.456968 85.9282095 1.934135762 0.011208 184 81 SH21249 21249 YPL031C spliced 29.500783 179.844123 104.672453 2.019832402 -0.181628 184 82 SH13331 13331 MT COX1 COX1-ai5a 29.593159 190.590337 29.593159 161.997178 95.7951685 1.981343606 -0.078133 184 83 SH4888 4888 snR8 3' 29.673987 146.378183 88.026085 1.944611387 0.009622 184 84 SH20433 20433 YGL076C spliced 31.74742 184.894676 108.321048 2.034712853 -0.087449 184 85 SH10094 10094 RUF6 RUF6 316 335 35.832533 145.397377 90.614955 1.957199879 0.397877 184 86 SH2615 2615 Pro3 tRNA-exon/intron 26 38 31.87428 158.565668 95.219974 1.978728059 0.090967 184 87 SH5694 5694 snR34 snR34 391 410 29.920191 170.236508 100.0783495 2.000340134 -0.099458 184 88 SH7421 7421 snR69 snR69 6 20 47.186629 212.425103 129.805866 2.113294319 -0.077108 184 89 SH6872 6872 snR56 5' - 11 -9 11 30.047738 161.586488 95.817113 1.981443081 -0.04444 184 90 SH13965 13965 MT COB Cytbi3 30.119654 207.850041 30.119654 178.730387 104.4250205 2.018804569 -0.136506 184 91 SH10447 10447 RUF8 RUF8 161 178 30.19677 189.858347 110.0275585 2.041501476 -0.193092 184 92 SH19652 19652 SIR1 2.2 30.278677 180.067433 105.173055 2.021904489 -0.134234 184 93 SH9217 9217 snR6 / U6 RNA 5' 30.36526 160.919119 95.6421895 1.98064951 -0.019272 184 94 SH6025 6025 snR37 snR37 41 60 36.616995 163.227031 99.922013 1.999661175 0.29383 184 95 SH15712 15712 YBR220C_2_663261_662457_INTRON_302_722 intron 33.641105 209.236151 33.641105 176.595046 105.1180755 2.021677401 0.059456 184 96 SH451 451 Asp1 3' flank 34.78437 158.596556 96.690463 1.98538364 0.254095 184 97 SH6584 6584 snR47 snR47 26 40 34.898589 179.979382 107.4389855 2.031161899 0.071385 184 98 SH20267 20267 YDR424C spliced 32.928273 167.876893 100.402583 2.001744886 0.093807 184 99 SH19403 19403 YPR063C_16_678315_677807_INTRON_42_127 3' exon 35.111557 236.846924 35.111557 202.735367 118.923462 2.075267544 -0.159622 184 100 SH12770 12770 MT COX1 COX1ai1 31.011467 192.655752 31.011467 162.644285 96.827876 1.986000405 0.013863 184 101 SH8595 8595 snR19 / U1 RNA U1 471 488 31.067696 149.105773 90.0867345 1.954660845 0.089954 184 102 SH19086 19086 YOR293W_15_867094_867848_INTRON_53_489 intron/exon 35.311379 188.975131 35.311379 154.663752 94.9875655 1.977666757 0.307717 184 103 SH7558 7558 snR79 3' 31.112898 159.207906 95.160402 1.978456268 0.039866 184 104 SH13409 13409 MT COX1 intronic 31.099681 210.491828 31.099681 180.392147 105.745914 2.024263595 -0.086052 185 2 SH13124 13124 MT COX1 COX1ai3 29.408477 180.664115 29.408477 152.255638 90.8320575 1.958239152 -0.040885 185 3 SH10184 10184 RUF6 RUF6 766 780 32.291353 172.987547 102.63945 2.011314316 0.026825 185 4 SH18051 18051 YLR333C_12_796335_795573_INTRON_1_423 intron 30.011877 187.735611 30.011877 158.723734 94.3678055 1.974823856 -0.032438 185 5 SH9988 9988 RUF5-1 RUF5-1 746 763 33.776813 180.708544 107.2426785 2.030367652 0.025423 185 6 SH19075 19075 YOR293W_15_867094_867848_INTRON_53_489 intron 31.462785 199.365496 31.462785 168.902711 100.182748 2.00079294 0.002511 185 7 SH8514 8514 snR19 / U1 RNA U1 66 88 26.224281 122.20966 74.2169705 1.870503223 -0.10163 185 8 SH17142 17142 YHR010W_8_126513_127484_INTRON_32_592 intron 32.754909 191.608682 32.754909 159.853773 96.304341 1.983645864 0.133694 185 9 SH11417 11417 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3971 3986 122.012249 286.532661 204.272455 2.310209808 0.150189 185 10 SH8504 8504 snR19 / U1 RNA U1 16 35 32.05047 170.557129 101.3037995 2.005625734 0.027204 185 11 SH2037 2037 Lys3 3' flank 29.837961 155.876827 92.857394 1.967816491 -0.029837 185 12 SH19690 19690 Negative Control 31.424456 160.108764 95.76661 1.981214114 0.054558 185 13 SH14666 14666 MT 21S rRNA 21S rRNA4 27.459078 174.837754 27.459078 148.378676 87.918877 1.944082132 -0.164333 185 14 SH7890 7890 snoRNA cluster1 intergenic 30.936 206.036045 30.936 176.100045 103.5180225 2.015015967 -0.07145 185 15 SH13737 13737 MT COB Exon1 27.098863 171.961068 27.098863 145.862205 86.480534 1.936918363 -0.178814 185 16 SH15333 15333 YAL030W_1_87288_87754_INTRON_103_215 5' exon 32.428402 213.442463 32.428402 182.014061 107.2212315 2.030280791 -0.035527 185 17 SH6867 6867 snR56 5' 26.883799 154.662762 90.7732805 1.957958031 -0.241251 185 18 SH9099 9099 snR14 / U4 RNA U4 111 128 30.446659 144.950004 87.6983315 1.942991331 0.070948 185 19 SH13447 13447 MT COX1 intronic 26.811139 181.821419 26.811139 156.01028 91.4107095 1.96099708 -0.253711 185 20 SH10086 10086 RUF6 RUF6 276 294 26.822404 168.649676 97.73604 1.990054739 -0.314749 185 21 SH17011 17011 YGR148C_7_788173_787307_INTRON_1_392 intron 28.667906 205.087477 28.667906 177.419571 103.0437385 2.013021607 -0.221374 185 22 SH5679 5679 snR34 snR34 316 332 85.306663 295.991185 190.648924 2.280234359 -0.262843 185 23 SH9392 9392 RUF1 536-550 + 3' 536 37.895618 188.396917 113.1462675 2.053640232 0.054113 185 24 SH18071 18071 YLR344W_12_819312_820142_INTRON_20_466 intron 27.043718 174.978178 27.043718 148.93446 87.989089 1.944428821 -0.199348 185 25 SH20256 20256 YDR381W spliced 28.937754 157.481533 93.2096435 1.969460847 -0.10171 185 26 SH13062 13062 MT COX1 intronic 34.509916 227.0008 34.509916 193.490884 114.0004 2.056906375 -0.070205 185 27 SH4100 4100 SRP RNA SRP RNA 391 405 30.923078 138.670972 84.797025 1.928380616 0.138613 185 28 SH20969 20969 YML026C spliced 29.168824 157.60511 93.386967 1.970286271 -0.08584 185 29 SH2855 2855 Pro7 tRNA 81 95 42.218056 168.146801 105.1824285 2.021943194 0.378188 185 30 SH2837 2837 Pro7 5' flank - tRNA7 7 83.450299 290.727578 187.0889385 2.272048111 -0.249089 185 31 SH17970 17970 YLR185W_12_522665_523290_INTRON_8_366 intron 29.452165 198.325367 29.452165 169.873202 99.6626835 1.998532577 -0.12676 185 32 SH20331 20331 YER074W spliced 31.401359 159.334531 95.367945 1.979402425 0.058108 185 33 SH1276 1276 Ile2 tRNA-intron 76 93 27.72921 143.081772 85.405491 1.931485794 -0.115387 185 34 SH5550 5550 snR33 snR33 36 60 27.762887 156.626125 92.194506 1.964705042 -0.183315 185 35 SH3101 3101 Ser4 5' flank 29.646326 147.905436 88.775881 1.948294991 -0.000685 185 36 SH3574 3574 Tyr2 3' flank 27.774401 141.301289 84.537845 1.927051173 -0.102199 185 37 SH19214 19214 YPL081W_16_404945_406039_INTRON_8_508 intron 29.648398 207.644074 29.648398 178.995676 104.322037 2.018376059 -0.167493 185 38 SH1155 1155 His1 5' flank - tRNA12 12 35.295731 164.964887 100.130309 2.000565556 0.231934 185 39 SH14154 14154 MT COB intronic 29.722239 187.248129 29.722239 158.52589 94.1240645 1.973700673 -0.051553 185 40 SH437 437 Asp1 tRNA 6 23 65.737992 210.256287 137.9971395 2.139870084 0.189195 185 41 SH7665 7665 snoRNA cluster1 snR78 28.044186 175.420803 28.044186 148.376617 88.2104015 1.945519799 -0.119917 185 42 SH5079 5079 snR11 5' - 15 -4 15 28.182392 134.461599 81.3219955 1.910208027 -0.032821 185 43 SH2487 2487 Pro1 5' flank 28.332989 161.757959 95.045474 1.977931441 -0.167245 185 44 SH5080 5080 snR11 snR11 1 22 30.403793 139.271228 84.8375105 1.928587916 0.099579 185 45 SH9171 9171 snR7 U5 RNA U5 126 143 42.15165 206.73798 124.444815 2.094976806 -0.087884 185 46 SH16699 16699 YGL031C_7_438393_437938_INTRON_1_456 intron 34.574562 221.959828 34.574562 188.385266 111.479914 2.047196625 -0.016817 185 47 SH14865 14865 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 / 3' 28.869699 185.286296 28.869699 157.416597 93.143148 1.969150912 -0.106262 185 48 SH18739 18739 YNL162W_14_331319_332151_INTRON_5_516 intron 27.980439 172.283951 27.980439 145.303512 86.6419755 1.937728346 -0.1084 185 49 SH5415 5415 snR31 snR31 141 157 493.896437 496.320939 495.108688 2.694700547 0.778492 185 50 SH9331 9331 RUF1 RUF1 231 247 32.946664 169.497536 101.2221 2.005275343 0.08509 185 51 SH13924 13924 MT COB Cytbi3 29.021926 206.993382 29.021926 178.971456 103.996691 2.017019521 -0.207279 185 52 SH7972 7972 snoRNA cluster 2 5'/snR57 44.626196 211.990703 44.626196 168.364507 106.4953515 2.027330651 0.414616 185 53 SH14033 14033 MT COB Cytbi4 26.960836 152.838359 26.960836 126.877523 76.9191795 1.886034643 -0.075902 185 54 SH20247 20247 YDR381C-A spliced 28.820505 158.562994 93.6917495 1.971701349 -0.115679 185 55 SH4725 4725 snR4 snR4 161 180 28.72931 128.694809 78.7120595 1.896041276 0.042975 185 56 SH20790 20790 YKL081W spliced 28.644406 168.547959 98.5961825 1.9938601 -0.17787 185 57 SH20292 20292 YDR500C spliced 215.619215 372.898329 294.258772 2.468729418 0.278972 185 58 SH11864 11864 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6206 6221 29.486094 154.003449 91.7447715 1.962581323 -0.044661 185 59 SH11540 11540 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4586 4599 7714.527017 7724.434744 7719.480881 3.887588096 -0.048529 185 60 SH19656 19656 SIR1 2.2 28.496656 118.920422 73.708539 1.867517803 0.091715 185 61 SH15210 15210 MT COX3 cox3 32.363697 196.093311 32.363697 164.729614 98.5466555 1.99364189 0.080706 185 62 SH1184 1184 His1 3' flank 30.48478 180.350704 105.417742 2.02291371 -0.12315 185 63 SH2531 2531 Pro1 3' flank 34.409231 170.149634 102.2794325 2.00978831 0.149242 185 64 SH13640 13640 MT ATP6 ATP6 26.753087 131.585908 26.753087 105.832821 66.292954 1.821467372 0.059542 185 65 SH15472 15472 YBL091C-A_2_46858_46559_INTRON_35_122 5' exon 30.691262 218.407114 30.691262 188.715852 109.703557 2.040220709 -0.162498 185 66 SH10673 10673 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 251 269 26.869478 115.09111 70.980294 1.851137794 -0.001678 185 67 SH17966 17966 YLR185W_12_522665_523290_INTRON_8_366 intron 28.848145 162.285807 28.848145 134.437662 81.6429035 1.911918441 0.016491 185 68 SH7011 7011 snR60 3' 30.807722 150.341645 90.5746835 1.957006825 0.065828 185 69 SH13902 13902 MT COB Exon3 26.91048 170.102902 26.91048 144.192422 85.551451 1.93222738 -0.184534 185 70 SH5313 5313 snR30 snR30 416 433 28.829246 132.108583 80.4689145 1.905628143 0.02873 185 71 SH7825 7825 snoRNA cluster1 intergenic 26.860063 175.855299 26.860063 149.995236 88.4276495 1.946588081 -0.21923 185 72 SH5381 5381 snR31 5' 32.656876 134.752806 83.704841 1.922750576 0.275477 185 73 SH9247 9247 snR6 / U6 RNA 106-112 + 3' 106 26.835887 116.472091 71.653989 1.855240373 -0.014204 185 74 SH11061 11061 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2191 2209 61.921525 168.140997 115.031261 2.060815881 0.623563 185 75 SH11239 11239 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3081 3097 3164.228181 4527.563583 3845.895882 3.584997523 -0.354744 185 76 SH18907 18907 YOL120C_15_94401_93394_INTRON_113_559 intron 29.914623 169.305432 29.914623 140.390809 85.152716 1.930198505 0.059179 185 77 SH19595 19595 AEP2/ATP13 2.1 31.012457 167.905258 99.4588575 1.997643466 -0.018421 185 78 SH17522 17522 YJL136C_10_156971_156248_INTRON_25_484 intron 29.190665 196.797938 29.190665 168.607273 98.898969 1.995191764 -0.138951 185 79 SH777 777 Glu1 5' flank 29.338893 180.095792 104.7173425 2.020018612 -0.193335 185 80 SH2992 2992 Ser2 5' flank 29.490227 134.442321 81.966274 1.913635193 0.062826 185 81 SH15284 15284 MT 9S rRNA 9S 37.629826 230.222997 37.629826 193.593171 115.6114985 2.06300103 -0.010123 185 82 SH362 362 Arg5 3' flank 29.769512 120.263415 75.0164635 1.875156586 0.172279 185 83 SH17343 17343 YIL018W_9_316766_317930_INTRON_5_404 intron 29.886026 194.34554 29.886026 165.459514 97.67277 1.989773504 -0.074827 185 84 SH12097 12097 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7371 7391 25.948249 118.148285 72.048267 1.857623539 -0.095099 185 85 SH10766 10766 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 716 734 36.143234 173.154775 104.6490045 2.019735101 0.178595 185 86 SH2413 2413 Phe4 3' flank 30.127942 149.600554 89.864248 1.953586944 0.023527 185 87 SH10361 10361 RUF7 RUF7 416 432 32.213306 168.737675 100.4754905 2.002060135 0.047574 185 88 SH3368 3368 Thr4 5' flank 28.18912 136.502237 82.3456785 1.915640812 -0.044057 185 89 SH21778 21778 copy of SH14042 30.262762 180.709197 105.4859795 2.02319474 -0.138832 185 90 SH19030 19030 YOR182C_15_678792_678190_INTRON_4_414 3' exon 32.341566 199.885238 32.341566 168.543672 100.442619 2.001918028 0.056171 185 91 SH9837 9837 RUF5-1 5' - 13 -9 13 28.29658 115.829379 72.0629795 1.857712214 0.099083 185 92 SH1873 1873 Leu9 3' flank 26.293446 100.292577 63.2930115 1.80135576 0.069339 185 93 SH590 590 Gln1 5' flank - tRNA8 5' flank 8 34.538395 186.618525 110.57846 2.043670537 -0.00217 185 94 SH3450 3450 Trp1 tRNA 81 97 32.551889 158.61653 95.5842095 1.980386153 0.129965 185 95 SH13067 13067 MT COX1 intronic 30.567882 186.542743 30.567882 156.974861 93.7713715 1.972070268 0.014633 185 96 SH1440 1440 Leu2 5' flank 32.712523 195.552223 114.132373 2.057408847 -0.146142 185 97 SH2712 2712 Pro5 5' flank 33.838552 143.711118 88.774835 1.948289874 0.297104 185 98 SH6672 6672 snR48 3' 31.852911 186.323591 109.088251 2.037777979 -0.096466 185 99 SH18999 18999 YOR122C_15_552886_552297_INTRON_14_222 intron 30.892145 213.897424 30.892145 184.005279 107.448712 2.031201214 -0.118717 185 100 SH7650 7650 snoRNA cluster1 5' 28.871174 176.827519 28.871174 148.956345 88.9137595 1.948968974 -0.061748 185 101 SH19457 19457 CYC1 31.010966 165.289401 98.1501835 1.991891116 -0.002557 185 102 SH18002 18002 YLR287C-A_12_713158_712537_INTRON_4_433 intron 28.946283 170.473349 28.946283 142.527066 85.7366745 1.933166634 -0.021892 185 103 SH11990 11990 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S/3'ETS 6836 6858 27.904613 118.495627 73.20012 1.864511793 0.051502 185 104 SH14792 14792 "MT tRNAs (Lys, Arg1, Gly)" 5' 37.389172 227.211011 37.389172 190.821839 114.1055055 2.057306599 0.016741 186 2 SH919 919 Glu3 3' flank 28.400164 162.926638 95.663401 1.980745817 -0.168163 186 3 SH1658 1658 Leu5 3' flank 30.272692 164.298444 97.285568 1.988048419 -0.042444 186 4 SH19247 19247 YPL129W_16_305297_306136_INTRON_10_114 5' exon 28.015313 201.89551 28.015313 174.880197 101.447755 2.006242441 -0.253832 186 5 SH1600 1600 Leu4 3' flank 33.817194 175.02845 104.422822 2.018795426 0.080747 186 6 SH10235 10235 RUF6 RUF6 1021 1038 29.509754 151.562972 90.536363 1.956823044 -0.030056 186 7 SH15923 15923 YDL108W_4_267697_268698_INTRON_29_109 5' exon 35.125127 207.75485 35.125127 173.629723 104.377425 2.018606579 0.139745 186 8 SH19135 19135 YPL075W_16_412249_415357_INTRON_9_759 intron 35.725168 203.631017 35.725168 168.905849 102.3155085 2.009941467 0.206582 186 9 SH7296 7296 snR66 5' 509.718696 889.207444 699.46307 2.84476479 -0.13969 186 10 SH5058 5058 snR10 3' 32.09788 165.291882 98.694881 1.994294628 0.061826 186 11 SH21222 21222 YOR182C spliced 33.66202 179.382643 106.5223315 2.027440663 0.033772 186 12 SH7450 7450 snR69 3' 105.603432 259.937563 182.7704975 2.261906094 0.192399 186 13 SH331 331 Arg5 5' flank - tRNA7 5' flank 7 33.066944 173.348516 103.20773 2.013712226 0.069077 186 14 SH650 650 Gln2 tRNA 36 48 45.74716 200.79087 123.269015 2.090853926 0.029805 186 15 SH8638 8638 snR19 / U1 RNA 3' 27.137675 129.819033 78.478354 1.894749886 -0.081451 186 16 SH5134 5134 snR11 3' 30.648421 149.783053 90.215737 1.955282301 0.058085 186 17 SH1454 1454 Leu2 tRNA-intron 41 57 34.175343 190.105833 112.140588 2.049762829 -0.046071 186 18 SH2437 2437 Phe5 5' flank 72.345974 240.629482 156.487728 2.194480285 -0.006759 186 19 SH4928 4928 snR9 snR9 46 63 34.080314 160.406231 97.2432725 1.987859566 0.204342 186 20 SH19788 19788 Negative Control 35.910381 201.158686 118.5345335 2.073844895 -0.126703 186 21 SH12376 12376 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 41.417041 205.213599 41.417041 164.796558 103.1067995 2.013287306 0.408467 186 22 SH21272 21272 YPL090C spliced 34.223666 182.364113 108.2938895 2.034603952 0.025778 186 23 SH11558 11558 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4676 4691 23484.03929 17304.93994 20394.48961 4.309512841 0.109372 186 24 SH3193 3193 Ser5 3' flank 43.568582 165.397097 104.4828395 2.019044967 0.436375 186 25 SH12512 12512 MT_ORF6 + ORF7 (hypothetical) 5'/ORF6 29.00972 198.269781 29.00972 170.260061 99.6348905 1.998411448 -0.159757 186 26 SH9079 9079 snR14 / U4 RNA U4 11 27 69.704343 262.106896 165.9056195 2.219861097 -0.210647 186 27 SH16391 16391 YER044C-A_5_239773_238459_INTRON_64_151 intron 32.866254 193.633362 32.866254 161.767108 97.316681 1.988187289 0.127949 186 28 SH14336 14336 MT VAR1 includes 5’ processing site VAR1 31.119497 216.2637 31.119497 186.144203 108.63185 2.035957176 -0.122745 186 29 SH18628 18628 YNL096C_14_444312_443395_INTRON_145_489 intron 34.934822 237.16898 34.934822 203.234158 119.08449 2.075855201 -0.168544 186 30 SH10234 10234 RUF6 RUF6 1016 1035 33.187334 154.434372 93.810853 1.972253085 0.193254 186 31 SH18462 18462 YMR143W_13_551927_552902_INTRON_25_568 intron 228.409832 712.69693 228.409832 485.287098 356.848465 2.552483833 -0.112786 186 32 SH3110 3110 Ser4 5' flank 31.496638 184.422467 107.9595525 2.033261076 -0.092634 186 33 SH5137 5137 snR11 3' 35.296422 201.869093 118.5827575 2.074021545 -0.146581 186 34 SH4801 4801 snR5 snR5 176 188 44.716698 193.479483 119.0980905 2.075904798 0.099001 186 35 SH4095 4095 SRP RNA SRP RNA 366 378 35.302406 172.666701 103.9845535 2.016968831 0.155161 186 36 SH4406 4406 telomerase RNA telomerase 1066 1080 607.713167 1025.498226 816.6056965 2.912012405 -0.15065 186 37 SH6455 6455 snR45 snR45 121 140 31.507097 149.366432 90.4367645 1.956345016 0.117686 186 38 SH12378 12378 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.261638 214.399687 35.261638 180.138049 107.6998435 2.032215072 0.082295 186 39 SH6608 6608 snR47 3' 29.683397 147.593748 88.6385725 1.947622753 0.003617 186 40 SH15722 15722 YBR255C-A_2_727032_726576_INTRON_64_157 intron 35.412491 191.522711 35.412491 157.11022 96.2613555 1.983451973 0.297117 186 41 SH4844 4844 snR8 snR8 1 20 56.411303 213.942044 135.1766735 2.130901755 0.033528 186 42 SH15529 15529 YBR048W_2_332790_333771_INTRON_46_556 intron/exon 28.15128 178.261529 28.15128 151.110249 89.6307645 1.952457101 -0.126116 186 43 SH1339 1339 Ile3 tRNA-intron 76 93 28.313568 150.510249 89.4119085 1.951395365 -0.11091 186 44 SH5968 5968 snR36 snR36 296 313 32.318793 164.635288 98.4770405 1.993334988 0.078692 186 45 SH4545 4545 U3b (snR17b) U3b 281 295 32.501216 189.604906 111.053061 2.045530534 -0.101788 186 46 SH19312 19312 YPL198W_16_173151_174701_INTRON_12_420 intron 30.726106 215.67628 30.726106 185.950174 108.33814 2.034781375 -0.139474 186 47 SH6780 6780 snR50 76-90 + 3' 76 38.657394 191.983339 115.3203665 2.061906014 0.027124 186 48 SH7104 7104 snR63 snR63 26 43 32.909531 177.817479 105.363505 2.022690209 0.021477 186 49 SH4148 4148 SRP RNA SRP RNA 631 643 36.892153 185.056869 110.974511 2.04522324 0.074085 186 50 SH19150 19150 YPL075W_16_412249_415357_INTRON_9_759 intron 36.909554 280.087411 36.909554 244.177857 140.5437055 2.1478114 -0.546764 186 51 SH18550 18550 YMR230W_13_732413_733140_INTRON_53_462 intron 27.086524 198.267575 27.086524 172.181051 99.6337875 1.99840664 -0.3112 186 52 SH2925 2925 Pro8 3' flank 32.881434 168.382184 100.631809 2.00273528 0.088093 186 53 SH13942 13942 MT COB Cytbi3 27.911487 168.552081 27.911487 141.640594 84.7760405 1.928273129 -0.093699 186 54 SH5747 5747 snR35 5' 40.429464 174.867821 107.6486425 2.032008558 0.262203 186 55 SH3880 3880 RNaseP 366-369 + 3' 366 61.654029 206.889258 134.2716435 2.127984305 0.17225 186 56 SH10421 10421 RUF8 RUF8 31 51 32.439458 168.395508 100.417483 2.001809331 0.062714 186 57 SH7618 7618 snR189 snR189 161 178 30.441369 143.626496 87.0339325 1.939688607 0.078018 186 58 SH16335 16335 YDR471W_4_1401759_1402553_INTRON_32_415 3' exon 61.242874 280.822843 61.242874 220.579969 140.9114215 2.148946196 0.032221 186 59 SH17227 17227 YHR077C_8_255757_252375_INTRON_7_119 5' exon 32.303628 223.821559 32.303628 192.517931 112.4107795 2.050807959 -0.134821 186 60 SH21112 21112 YNL096C spliced 30.392963 186.018182 108.2055725 2.034249627 -0.160225 186 61 SH14177 14177 MT COB intron/exon6 30.421238 188.55022 30.421238 159.128982 94.77511 1.976694297 -0.006388 186 62 SH2965 2965 Ser1 tRNA 56 68 36.241854 174.201242 105.221548 2.022104687 0.171692 186 63 SH11021 11021 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1991 2004 45318.54514 37491.47618 41405.01066 4.617052901 -0.265353 186 64 SH11919 11919 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6481 6501 65.474495 197.638748 131.5566215 2.119112712 0.315147 186 65 SH261 261 Arg4 5' flank 30.604064 176.841579 103.7228215 2.015874322 -0.095886 186 66 SH440 440 Asp1 tRNA 21 33 244.309945 468.507805 356.408875 2.55194851 0.026317 186 67 SH11171 11171 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2741 2757 809.674303 933.969371 871.821837 2.940427743 0.363817 186 68 SH15914 15914 YDL083C_4_307788_306925_INTRON_25_456 intron 32.549592 208.383616 32.549592 176.834024 104.691808 2.0199127 0.017662 186 69 SH18620 18620 YNL096C_14_444312_443395_INTRON_145_489 5' exon 31.546256 223.554015 31.546256 193.007759 112.2770075 2.050290829 -0.16753 186 70 SH20461 20461 YGL183C spliced 31.503476 185.640289 108.5718825 2.035717368 -0.10348 186 71 SH20495 20495 YGL251C spliced 28.577773 164.184399 96.381086 1.983991816 -0.161454 186 72 SH10888 10888 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1326 1346 129.701579 290.488275 210.094927 2.322415566 0.186614 186 73 SH9035 9035 snR17a / U3a U3a 461 476 100.18515 265.176505 182.6808275 2.26169297 0.10298 186 74 SH12320 12320 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.555283 204.474475 30.555283 174.919192 102.7372375 2.011727884 -0.087763 186 75 SH9717 9717 RUF4 RUF4 361 377 32.584122 187.199389 109.8917555 2.040965111 -0.07719 186 76 SH3593 3593 Val1 5' flank 30.778993 162.808829 96.793911 1.985848038 -0.00123 186 77 SH8329 8329 snoRNA cluster4 intergenic/snR53 27.037365 137.829362 27.037365 111.791997 69.414681 1.841451332 0.035381 186 78 SH5214 5214 snR30 5' 31.131274 158.009901 94.5705875 1.975756087 0.04721 186 79 SH11768 11768 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5726 5744 39.258258 162.954263 101.1062605 2.004778048 0.380087 186 80 SH10496 10496 RUF8 RUF8 406 423 29.550203 184.98414 107.2671715 2.030466829 -0.20713 186 81 SH16703 16703 YGL031C_7_438393_437938_INTRON_1_456 intron 29.738231 187.422775 29.738231 158.684544 94.2113875 1.9741034 -0.051247 186 82 SH13342 13342 MT COX1 COX1-ai5a 29.911863 202.903289 29.911863 173.991426 101.9516445 2.008394235 -0.122145 186 83 SH13148 13148 MT COX1 intronic 34.11652 234.543149 34.11652 201.426629 117.7715745 2.071040481 -0.165857 186 84 SH9364 9364 RUF1 RUF1 396 413 32.225699 202.619314 117.4225065 2.069751347 -0.22401 186 85 SH7379 7379 snR68 snR68 116 133 38.461902 172.76871 105.615306 2.023726862 0.253207 186 86 SH14878 14878 MT tRNA Ala 5' / tRNA 32.410634 221.028452 32.410634 189.617818 111.014226 2.045378635 -0.105246 186 87 SH5357 5357 snR30 3' 34.512628 185.550478 110.031553 2.041517243 0.006621 186 88 SH20261 20261 YDR397C spliced 32.491994 171.159059 101.8255265 2.007856664 0.049201 186 89 SH2245 2245 Phe1 3' flank 457.239892 564.035547 510.6377195 2.708112892 0.471923 186 90 SH2346 2346 Phe3 tRNA 56 70 869.85136 996.682024 933.266692 2.970005766 0.349942 186 91 SH13338 13338 MT COX1 COX1-ai5a 28.405428 192.353624 28.405428 164.948196 96.676812 1.985322321 -0.177767 186 92 SH4091 4091 SRP RNA SRP RNA 346 362 33.540263 167.071776 100.3060195 2.001326996 0.133116 186 93 SH10788 10788 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 826 847 49.001824 234.879664 141.940744 2.152107077 -0.271877 186 94 SH7998 7998 snoRNA cluster 2 intergenic 30.504308 192.656783 30.504308 163.152475 96.8283915 1.986002717 -0.020957 186 95 SH16650 16650 YFR031C-A_6_221405_220494_INTRON_5_151 intron 30.547476 167.192308 30.547476 137.644832 84.096154 1.924776135 0.118663 186 96 SH111 111 Arg1 5' flank 32.666442 161.264018 96.96523 1.986616032 0.119714 186 97 SH8880 8880 LSR1 / U2 RNA U2 1041 1057 34.805394 202.079125 118.4422595 2.073506684 -0.158757 186 98 SH366 366 Asn1 5' flank 30.73757 184.244519 107.4910445 2.031372283 -0.129414 186 99 SH11932 11932 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6546 6561 45.381919 195.821314 120.6016165 2.081353129 0.081096 186 100 SH15792 15792 YDL029W_4_399336_400634_INTRON_23_145 3' exon 41.29862 228.620668 41.29862 188.322048 114.810334 2.05998098 0.113021 186 101 SH15672 15672 YBR191W_2_606228_607098_INTRON_12_399 intron 30.914444 214.211904 30.914444 184.29746 107.605952 2.031836294 -0.11898 186 102 SH4461 4461 telomerase RNA 3' 33.043968 196.888969 114.9664685 2.060571191 -0.145561 186 103 SH3971 3971 RNase MRP RNaseMRP 271 285 35.170684 153.65551 94.413097 1.975032244 0.306899 186 104 SH8888 8888 LSR1 / U2 RNA U2 1081 1095 35.18643 187.827086 111.506758 2.047301189 0.008233 187 2 SH2125 2125 Met1 tRNA 11 25 341.820413 499.544282 420.6823475 2.623954289 0.319387 187 3 SH20892 20892 YLR287C-A spliced 36.437262 195.991989 116.2146255 2.065260787 -0.059728 187 4 SH16832 16832 YGL178W_7_167356_170575_INTRON_4_643 intron 30.051332 205.678214 30.051332 176.626882 103.339107 2.014264704 -0.128723 187 5 SH5053 5053 snR10 3' 31.810888 156.016467 93.9136775 1.972728847 0.102313 187 6 SH21026 21026 YMR116C spliced 33.504593 177.560215 105.532404 2.023385831 0.045388 187 7 SH9681 9681 RUF4 RUF4 181 201 29.219724 142.850318 86.035021 1.934675269 -0.003856 187 8 SH20056 20056 YBR220C spliced 31.835238 154.687227 93.2612325 1.969701151 0.110833 187 9 SH6403 6403 snR43 3' 34.388882 192.975619 113.6822505 2.055692662 -0.066883 187 10 SH14907 14907 MT tRNA Tyr 5' 32.116713 197.252924 32.116713 166.136211 99.126462 1.996189606 0.057746 187 11 SH16537 16537 YER131W_5_423587_424307_INTRON_1_361 intron 35.577444 185.90679 35.577444 151.329346 93.453395 1.970595083 0.343894 187 12 SH15912 15912 YDL083C_4_307788_306925_INTRON_25_456 intron 33.373661 205.303431 33.373661 172.92977 103.1517155 2.013476455 0.085287 187 13 SH14558 14558 MT 21S rRNA 21S rRNA3 12743.36523 20585.82878 12743.36523 7843.463549 10293.41439 4.012559457 0.576532 187 14 SH19519 19519 ACT1 32.854803 166.676088 99.7654455 1.998980146 0.096925 187 15 SH19337 19337 YPL241C_16_96258_95372_INTRON_26_105 intron 32.654518 189.444954 32.654518 157.790436 95.222477 1.978739474 0.141155 187 16 SH13970 13970 MT COB Cytbi3 32.497438 181.689447 32.497438 150.192009 91.3447235 1.960683466 0.177448 187 17 SH11483 11483 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4301 4314 43.308323 172.575293 107.941808 2.033189688 0.339609 187 18 SH19909 19909 YAL001C spliced 30.508015 188.255147 109.381581 2.038944196 -0.165547 187 19 SH2470 2470 Phe5 3' flank 30.490278 150.292256 90.391267 1.956126474 0.0446 187 20 SH3668 3668 Val2 3' flank 31.418405 168.903747 100.161076 2.000698981 -0.000134 187 21 SH18109 18109 YLR367W_12_855877_857316_INTRON_698_1180 intron 30.56579 187.395681 30.56579 157.829891 94.1978405 1.974040947 0.010091 187 22 SH14713 14713 MT tRNA cys; tRNA his 5' 27.00425 169.279683 27.00425 143.275433 85.1398415 1.930132837 -0.172236 187 23 SH18675 18675 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.085313 177.600897 27.085313 151.515584 89.3004485 1.95085364 -0.209501 187 24 SH8170 8170 snoRNA cluster 3; snR70 30.833997 169.535743 30.833997 139.701746 85.2678715 1.930785422 0.126765 187 25 SH14048 14048 MT COB Cytbi4 33.692735 215.092098 33.692735 182.399363 108.046049 2.03360889 0.006722 187 26 SH5918 5918 snR36 snR36 46 67 27.349588 136.462534 81.906061 1.91331604 -0.106815 187 27 SH8818 8818 LSR1 / U2 RNA U2 731 748 31.137583 158.680786 94.9091845 1.977308242 0.044199 187 28 SH2808 2808 Pro6 3' flank 2464.311156 1630.44716 2047.379158 3.311198278 0.922682 187 29 SH21073 21073 YMR225C spliced 33.209206 183.426102 108.317654 2.034699245 -0.020066 187 30 SH3252 3252 Thr1 3' flank 33.313786 167.74447 100.529128 2.002291915 0.116368 187 31 SH6567 6567 snR47 5' 73.895827 251.464696 162.6802615 2.211334862 -0.076034 187 32 SH8464 8464 snoRNA cluster 5 3' 29.709105 184.106368 29.709105 155.397263 92.553184 1.966391364 -0.036323 187 33 SH16315 16315 YDR471W_4_1401759_1402553_INTRON_32_415 intron 29.731554 222.979346 29.731554 194.247792 111.989673 2.049177977 -0.249309 187 34 SH14805 14805 "MT tRNAs (Lys, Arg1, Gly)" intergenic 32.537986 216.292414 32.537986 184.754428 108.646207 2.036014569 -0.056703 187 35 SH16706 16706 YGL031C_7_438393_437938_INTRON_1_456 intron 35.314829 236.902362 35.314829 202.587533 118.951181 2.075368758 -0.153949 187 36 SH805 805 Glu1 tRNA 41 53 2177.539229 3087.985998 2632.762614 3.420411702 -0.240028 187 37 SH4682 4682 snR4 5' 33.343906 142.678663 88.0112845 1.944538359 0.272385 187 38 SH16629 16629 YFL039C_6_54695_53260_INTRON_11_318 intron 33.33482 177.593852 33.33482 145.259032 89.296926 1.950836509 0.2573 187 39 SH3695 3695 Val3 5' flank 35.247633 160.596973 97.922303 1.990881619 0.266092 187 40 SH10829 10829 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1031 1049 1885.315421 1808.762669 1847.039045 3.266476076 0.406739 187 41 SH16254 16254 YDR397C_4_1266887_1266355_INTRON_38_129 intron 31.724634 220.481141 31.724634 189.756507 110.7405705 2.044306757 -0.132107 187 42 SH4066 4066 SRP RNA SRP RNA 221 240 28.109037 159.048534 93.5787855 1.971177404 -0.170031 187 43 SH4862 4862 snR8 snR8 91 105 28.282003 154.768607 91.525305 1.961541185 -0.135202 187 44 SH17680 17680 YKL006W_11_431544_432358_INTRON_130_527 intron 51.537502 262.522023 51.537502 211.984521 131.7610115 2.11978692 -0.011907 187 45 SH16451 16451 YER074W-A_0_5_307649_INTRON_95_196 5' exon 57.675164 297.669599 57.675164 240.994435 149.3347995 2.174161023 -0.199943 187 46 SH20581 20581 YHR016C spliced 124.005902 298.620366 211.313134 2.324926491 0.089384 187 47 SH13608 13608 MT ATP8/AAP1 3' 28.928209 174.259564 28.928209 146.331355 87.629782 1.942651731 -0.043736 187 48 SH7673 7673 snoRNA cluster1 snR78 31.960152 188.366024 31.960152 157.405872 94.683012 1.976272065 0.103455 187 49 SH2322 2322 Phe3 5' flank 33.002714 154.453251 93.7279825 1.971869269 0.182702 187 50 SH1694 1694 Leu6 tRNA 36 51 29.093106 167.553017 98.3230615 1.992655393 -0.140817 187 51 SH19693 19693 Negative Control 29.056058 161.050561 95.0533095 1.977967242 -0.111397 187 52 SH19801 19801 Negative Control 30.930956 164.324684 97.62782 1.989573592 -0.001439 187 53 SH12579 12579 MT_15S MT_15S 36.661848 192.157438 36.661848 156.49559 96.578719 1.984881441 0.365915 187 54 SH9050 9050 snR17a / U3a 3' 28.758659 136.157577 82.458118 1.916233418 0.000041 187 55 SH15598 15598 YBR089C-A_2_426588_426148_INTRON_1_114 intron 28.649413 183.254874 28.649413 155.605461 92.127437 1.964388989 -0.112784 187 56 SH5186 5186 snR13 snR13 86 102 74.991458 253.022419 164.0069385 2.214862222 -0.075339 187 57 SH6564 6564 snR47 5' 30.419584 178.317725 104.3686545 2.018570085 -0.115634 187 58 SH14642 14642 MT 21S rRNA intronic 27.50961 188.735955 27.50961 162.226345 94.8679775 1.977119642 -0.230791 187 59 SH18596 18596 YNL069C_14_494998_493953_INTRON_29_477 intron 38.066062 226.775184 38.066062 189.709122 113.887592 2.05647641 0.042171 187 60 SH20374 20374 YER179W spliced 30.398403 180.287618 105.3430105 2.022605725 -0.128099 187 61 SH13753 13753 MT COB Exon1 28.507115 158.116809 28.507115 130.609694 79.5584045 1.900686065 0.014767 187 62 SH6045 6045 snR37 snR37 141 159 45.89284 211.178585 128.5357125 2.109023809 -0.081661 187 63 SH7658 7658 snoRNA cluster1 5' / snR78 32.424151 182.937682 32.424151 151.513531 91.968841 1.963640713 0.165666 187 64 SH5504 5504 snR32 181-188+3' 181 28.593916 131.871514 80.232715 1.904351489 0.013051 187 65 SH2640 2640 Pro3 3' flank 30.529506 158.333838 94.431672 1.975117679 0.005043 187 66 SH8274 8274 snoRNA cluster4 snR67 40.170793 253.262719 40.170793 214.091926 127.1313595 2.104252691 -0.196683 187 67 SH11887 11887 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6321 6338 36.26601 154.615827 95.4409185 1.97973461 0.357899 187 68 SH2057 2057 Lys4 5' flank 28.51108 168.308053 98.4095665 1.993037319 -0.186398 187 69 SH15616 15616 YBR181C_2_592732_591670_INTRON_7_358 intron 30.373471 189.287627 30.373471 159.914156 95.1438135 1.978380555 -0.013636 187 70 SH2442 2442 Phe5 5' flank - tRNA1 1 28.40409 173.458819 100.9314545 2.004026532 -0.21862 187 71 SH5156 5156 snR13 5' 30.281392 161.255753 95.7685725 1.981223014 -0.026705 187 72 SH9242 9242 snR6 / U6 RNA U6 81 98 62.920698 227.963901 145.4422995 2.162690732 -0.013902 187 73 SH2477 2477 Phe5 3' flank 28.393622 154.449201 91.4214115 1.961047922 -0.125354 187 74 SH7284 7284 snR66 5' 30.383652 184.922508 107.65308 2.03202646 -0.154796 187 75 SH7591 7591 snR189 snR189 26 42 51.760471 201.629234 126.6948525 2.10275897 0.101137 187 76 SH11365 11365 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3711 3728 6111.055444 5719.334481 5915.194963 3.771969063 0.128084 187 77 SH11996 11996 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6866 6879 1008.708919 1387.631455 1198.170187 3.078518509 0.009223 187 78 SH2694 2694 Pro4 3' flank 29.122461 170.129474 99.6259675 1.998372552 -0.151086 187 79 SH15312 15312 YAL003W_1_142172_143158_INTRON_81_446 exon/intron 31.323643 183.693426 31.323643 153.369783 92.346713 1.965421442 0.08414 187 80 SH15396 15396 YBL050W_2_125087_126081_INTRON_31_146 5' exon 31.568066 211.451647 31.568066 180.883581 106.2258235 2.026230107 -0.060871 187 81 SH15275 15275 MT 9S rRNA 9S 29.799455 190.598717 29.799455 161.799262 95.7993585 1.981362601 -0.062726 187 82 SH15825 15825 YDL064W_4_337486_338069_INTRON_39_148 intron 27.988365 163.037817 27.988365 136.049452 82.0189085 1.913913985 -0.05652 187 83 SH17921 17921 YLR078C_12_286560_285737_INTRON_4_92 5' exon 30.194351 197.780265 30.194351 168.585914 99.3901325 1.99734327 -0.072507 187 84 SH13549 13549 MT COX1 intronic 36.486786 226.971156 36.486786 191.48437 113.985578 2.056849906 -0.008092 187 85 SH19191 19191 YPL079W_16_406631_407534_INTRON_12_432 3' exon 32.521363 191.183372 32.521363 159.662009 96.091686 1.982685813 0.121537 187 86 SH5699 5699 snR34 snR34 416 433 32.608956 184.435966 108.522461 2.035519634 -0.051182 187 87 SH12849 12849 MT COX1 COX1ai1 28.53649 185.24127 28.53649 157.70478 93.120635 1.969045929 -0.131836 187 88 SH3968 3968 RNase MRP RNaseMRP 256 273 30.609176 184.13899 107.374083 2.030899468 -0.136657 187 89 SH19865 19865 Negative Control 34.720272 189.02023 111.870251 2.048714612 -0.017457 187 90 SH14471 14471 MT 21S rRNA 21S rRNA3 28.508078 163.4835 28.508078 135.975422 82.24175 1.915092343 -0.017347 187 91 SH15772 15772 YCR097W_3_293828_294314_INTRON_106_159 3' exon 34.645524 220.495321 34.645524 186.849797 110.7476605 2.044334561 -0.00055 187 92 SH7657 7657 snoRNA cluster1 5' 30.496937 189.761201 30.496937 160.264264 95.3806005 1.979460052 -0.006989 187 93 SH3989 3989 RNase MRP 3' 30.476166 113.599557 72.0378615 1.857560812 0.267771 187 94 SH14798 14798 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys 34.581889 196.283802 34.581889 162.701913 98.641901 1.994061433 0.217216 187 95 SH19491 19491 YPT1 30.488504 184.55349 107.520997 2.031493283 -0.146326 187 96 SH689 689 Gln3 5' flank 38.760461 223.401182 131.0808215 2.117539154 -0.3154 187 97 SH13495 13495 MT COX1 intronic 42.955509 232.674644 42.955509 190.719135 116.837322 2.067581594 0.107724 187 98 SH19462 19462 CYC1 32.688544 152.104517 92.3965305 1.965655664 0.179366 187 99 SH13236 13236 MT COX1 COX1-ai4 32.750665 211.582632 32.750665 179.831967 106.291316 2.026497784 -0.003329 187 100 SH11557 11557 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4671 4684 18088.52111 11232.61729 14660.5692 4.166150832 0.458433 187 101 SH6765 6765 snR50 snR50 1 18 224.97754 481.182427 353.0799835 2.547873098 -0.115934 187 102 SH7336 7336 snR68 5' 30.824736 157.066417 93.9455765 1.972876336 0.031526 187 103 SH10772 10772 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 746 764 32.946024 160.68573 96.815877 1.985946584 0.139296 187 104 SH10370 10370 RUF7 RUF7 461 476 41.390221 195.487328 118.4387745 2.073493905 0.029015 188 2 SH7409 7409 snR69 5' 30.440132 153.305725 91.8729285 1.96318756 0.025102 188 3 SH6241 6241 snR42 5' - 5 -14 5 32.30588 180.095247 106.2005635 2.026126821 -0.022178 188 4 SH14929 14929 MT tRNA Asn 5' 28.005648 191.83325 28.005648 164.827602 96.416625 1.984151925 -0.20659 188 5 SH6886 6886 snR56 snR56 61 82 31.797402 157.089271 94.4433365 1.975171321 0.095882 188 6 SH19270 19270 YPL143W_16_282121_282969_INTRON_20_544 intron 31.499662 174.097044 31.499662 143.597382 87.548522 1.942248819 0.149104 188 7 SH19446 19446 CYC1 31.182101 185.523502 108.3528015 2.034840145 -0.114701 188 8 SH16576 16576 YER179W_5_548416_549512_INTRON_133_224 intron 32.804815 193.243358 32.804815 161.438543 97.121679 1.987316182 0.126517 188 9 SH9205 9205 snR7 U5 RNA 3' 32.456455 162.42311 97.4397825 1.988736306 0.100382 188 10 SH16045 16045 YDL191W_4_117665_118518_INTRON_4_494 intron 32.119596 189.579498 32.119596 158.459902 95.289749 1.979046183 0.105977 188 11 SH8910 8910 LSR1 / U2 RNA 3' 31.803021 149.985424 90.8942225 1.958536279 0.133736 188 12 SH14010 14010 MT COB intronic 35.261592 220.039671 35.261592 185.778079 110.5198355 2.04344023 0.030271 188 13 SH16984 16984 YGR118W_7_726968_727725_INTRON_66_385 5' exon 40.55526 225.604447 40.55526 186.049187 113.3022235 2.054238433 0.129413 188 14 SH10568 10568 RUF8 RUF8 766 784 32.873808 156.67576 94.774784 1.976692803 0.16087 188 15 SH10740 10740 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 586 604 36.344875 197.576144 116.9605095 2.068039251 -0.079057 188 16 SH18679 18679 YNL112W_14_413636_416278_INTRON_1274_2275 intron 34.344624 221.128304 34.344624 187.78368 111.064152 2.045573905 -0.019413 188 17 SH12688 12688 MT tRNA Trp 3' 30.591137 194.196923 30.591137 164.605786 97.5984615 1.989442972 -0.023827 188 18 SH20565 20565 YHR010W spliced 32.348486 177.56942 104.958953 2.02101949 0.003235 188 19 SH2989 2989 Ser2 5' flank 26.896402 153.802532 90.349467 1.955925595 -0.235917 188 20 SH3430 3430 Trp1 5' flank 26.921958 158.955709 92.9388335 1.968197217 -0.2596 188 21 SH17823 17823 YKR057W_11_551293_551878_INTRON_25_346 intron 30.613293 186.706769 30.613293 157.093476 93.8533845 1.972449939 0.017102 188 22 SH100 100 Ala2 3' flank 30.70175 191.314386 111.008068 2.045354544 -0.185165 188 23 SH10367 10367 RUF7 RUF7 446 462 30.805881 185.538178 108.1720295 2.034114978 -0.132373 188 24 SH5072 5072 snR11 5' 27.245818 138.593497 82.9196575 1.9186575 -0.127475 188 25 SH7645 7645 snoRNA cluster1 5' 25.505052 163.447141 25.505052 138.942089 82.2235705 1.914996332 -0.265343 188 26 SH7692 7692 snoRNA cluster1 intergenic 85.123553 304.677582 85.123553 220.554029 152.838791 2.184233594 0.311529 188 27 SH19874 19874 Negative Control 31.25559 175.007649 103.1316195 2.013391838 -0.045915 188 28 SH5626 5626 snR34 snR34 51 68 31.3647 155.544584 93.454642 1.970600878 0.075452 188 29 SH7509 7509 snR71 3' 33.338326 194.25009 113.794208 2.056120158 -0.112167 188 30 SH16392 16392 YER044C-A_5_239773_238459_INTRON_64_151 intron 35.310863 193.599321 35.310863 159.288458 97.2996605 1.988111325 0.277755 188 31 SH4730 4730 snR4 186 + 3' 186 33.505196 151.866153 92.6856745 1.967012615 0.228112 188 32 SH14647 14647 MT 21S rRNA intronic 28.838681 175.761627 28.838681 147.922946 88.3808135 1.946357995 -0.058694 188 33 SH14130 14130 MT COB intronic 29.774987 183.966957 29.774987 155.19197 92.4834785 1.966064156 -0.030655 188 34 SH4264 4264 telomerase RNA telomerase 356 373 31.615167 155.643312 93.6292395 1.971411496 0.091445 188 35 SH5478 5478 snR32 snR32 51 67 90.990786 282.123342 186.557064 2.270811698 -0.108662 188 36 SH8566 8566 snR19 / U1 RNA U1 326 345 30.539733 149.398412 89.9690725 1.954093243 0.052795 188 37 SH12722 12722 MT COX1 5' 31.417519 188.536219 31.417519 158.1187 94.7681095 1.976662217 0.065648 188 38 SH17662 17662 YKL002W_11_437416_438182_INTRON_61_128 3' exon 42.613662 231.468088 42.613662 189.854426 116.234044 2.065333348 0.113314 188 39 SH13367 13367 MT COX1 intronic 31.429205 198.985839 31.429205 168.556634 99.9929195 1.999969249 0.002599 188 40 SH6839 6839 snR52 3' 29.645475 148.484578 89.0650265 1.949707201 -0.00391 188 41 SH13952 13952 MT COB Cytbi3 31.659718 178.62064 31.659718 147.960922 89.81032 1.953326244 0.135373 188 42 SH1287 1287 Ile2 131-133 + 3' flank 131 150 29.950135 137.135319 83.542727 1.921908647 0.079962 188 43 SH4625 4625 snR3 snR3 41 57 36.813716 177.419438 107.116577 2.029856686 0.159557 188 44 SH9410 9410 RUF1 3' 28.432734 144.348072 86.390403 1.9364655 -0.069486 188 45 SH9986 9986 RUF5-1 RUF5-1 736 756 30.545649 176.328488 103.4370685 2.014676204 -0.096505 188 46 SH5100 5100 snR11 snR11 101 119 29.75553 166.829729 98.2926295 1.992520953 -0.09059 188 47 SH5277 5277 snR30 snR30 236 252 28.927373 167.413186 98.1702795 1.991980027 -0.151997 188 48 SH15877 15877 YDL082W_4_308423_309387_INTRON_5_369 intron 32.944396 193.717568 32.944396 161.773172 97.358784 1.988375141 0.132351 188 49 SH12813 12813 MT COX1 COX1ai1 31.05149 177.687782 31.05149 147.636292 89.343891 1.951064862 0.096895 188 50 SH16749 16749 YGL076C_7_365994_364333_INTRON_565_1032 intron 29.102164 193.343113 29.102164 165.240949 97.1715565 1.987539159 -0.128915 188 51 SH14083 14083 MT COB Cytbi4 31.021174 171.184233 31.021174 141.163059 86.0921165 1.934963385 0.131189 188 52 SH4017 4017 SRP RNA 5' 28.983275 138.778802 83.8810385 1.923663799 0.001567 188 53 SH322 322 Arg5 5' flank 42.515684 184.87328 113.694482 2.055739387 0.17269 188 54 SH21388 21388 Phe1_5 spliced 84.308365 250.035507 167.171936 2.223163372 0.054337 188 55 SH17859 17859 YKR095W-A_11_625432_625839_INTRON_39_113 3' exon 359.668213 873.121218 359.668213 514.453005 437.060609 2.640541667 0.331735 188 56 SH5923 5923 snR36 snR36 71 88 32.418015 186.874876 109.6464455 2.039994557 -0.080385 188 57 SH10930 10930 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1536 1549 49.704621 207.929389 128.817005 2.109973198 0.005648 188 58 SH21165 21165 YNL302C spliced 33.293235 182.952562 108.1228985 2.03391768 -0.012677 188 59 SH156 156 Arg1 3' flank 29.454397 190.313534 109.8839655 2.040934324 -0.242058 188 60 SH3181 3181 Ser5 tRNA 26 42 30.435228 177.366165 103.9006965 2.016618459 -0.109237 188 61 SH21867 21867 copy of SH19502 40.096834 154.980233 97.5385335 1.989176222 0.490069 188 62 SH7772 7772 snoRNA cluster1 snR76/intergenic 55.607303 238.12707 55.607303 183.519767 119.563535 2.077598747 0.357261 188 63 SH19308 19308 YPL198W_16_173151_174701_INTRON_12_420 intron 28.576538 165.773399 28.576538 138.196861 83.3866995 1.921096785 -0.024924 188 64 SH14834 14834 MT tRNA Asp 5' 30.499146 180.211947 30.499146 150.712801 90.6059735 1.957156831 0.04294 188 65 SH14311 14311 MT VAR1 includes 5’ processing site VAR1 28.549315 171.466384 28.549315 143.917069 86.233192 1.935674462 -0.058538 188 66 SH582 582 Gln1 5' flank 32.346806 191.076006 111.711406 2.048097518 -0.120535 188 67 SH10727 10727 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 521 534 1080.615824 1270.300587 1175.458206 3.070207192 0.238953 188 68 SH10165 10165 RUF6 RUF6 671 683 41.766905 190.512231 116.139568 2.064980206 0.093364 188 69 SH12599 12599 MT_15S MT_15S 35.918278 217.275287 35.918278 182.357009 109.1376435 2.037974572 0.083739 188 70 SH6599 6599 snR47 3' 75.088615 248.310085 161.69935 2.208708274 -0.036606 188 71 SH6169 6169 snR40 5' 28.188106 152.878841 90.5334735 1.956809183 -0.132431 188 72 SH20036 20036 YBR186W spliced 30.090013 174.067577 102.078795 2.008935535 -0.111489 188 73 SH11362 11362 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3696 3711 82.809336 231.921432 157.365384 2.196909206 0.18663 188 74 SH20323 20323 YER056C-A spliced 35.968739 198.80417 117.3864545 2.069617986 -0.099912 188 75 SH19465 19465 ADH1 32.296043 154.660235 93.478139 1.970710058 0.140798 188 76 SH14354 14354 MT ORF9 and ORF10 (hypothetical) 5' 34.423216 201.695774 34.423216 168.272558 101.347887 2.005814699 0.168449 188 77 SH21062 21062 YMR201C spliced 38.563968 188.221749 113.3928585 2.054585703 0.068508 188 78 SH7929 7929 snoRNA cluster1 snR72 31.024381 212.232368 31.024381 182.207987 106.616184 2.027823134 -0.100759 188 79 SH17215 17215 YHR039C-A_8_187670_187164_INTRON_4_165 3' exon 156.550143 494.949301 156.550143 339.399158 247.9746505 2.394407287 0.095312 188 80 SH14164 14164 MT COB intronic 27.576287 152.171299 27.576287 125.595012 76.5856495 1.8841474 -0.021062 188 81 SH455 455 Asp1 3' flank 29.818653 147.303684 88.5611685 1.947243338 0.014646 188 82 SH9354 9354 RUF1 RUF1 346 370 30.055966 154.582284 92.319125 1.96529168 -0.007974 188 83 SH4133 4133 SRP RNA SRP RNA 556 568 65.075551 212.387882 138.7317165 2.14217576 0.160057 188 84 SH203 203 Arg2 3' flank 36.602901 205.6398 121.1213505 2.083220705 -0.161172 188 85 SH12032 12032 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS/3'flank 7046 7069 28.521963 132.725764 80.6238635 1.906463606 0.002529 188 86 SH13438 13438 MT COX1 intronic 28.604586 194.673525 28.604586 167.068939 97.8367625 1.990502073 -0.173617 188 87 SH4459 4459 telomerase RNA 3' 30.711126 184.162381 107.4367535 2.031152876 -0.13057 188 88 SH16732 16732 YGL076C_7_365994_364333_INTRON_565_1032 intron 30.710095 187.052101 30.710095 157.342006 94.0260505 1.973248194 0.022373 188 89 SH10529 10529 RUF8 RUF8 571 592 28.609098 130.796233 79.7026655 1.901472846 0.020929 188 90 SH830 830 Glu2 5' flank 32.678683 205.456186 119.0674345 2.075792996 -0.239459 188 91 SH5873 5873 snR35 3' 32.605621 172.158842 102.3822315 2.010224591 0.04981 188 92 SH16907 16907 YGL232W_7_62074_63001_INTRON_58_115 intron 59.343213 304.679442 59.343213 246.336229 152.839721 2.184236236 -0.222079 188 93 SH11936 11936 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6566 6583 151.288748 370.967194 261.127971 2.416853394 -0.102391 188 94 SH5150 5150 snR13 5' 30.398864 159.202823 94.8008435 1.976812202 -0.008291 188 95 SH5254 5254 snR30 snR30 121 133 40.648018 200.414993 120.5315055 2.081100581 -0.038734 188 96 SH10615 10615 RUF8 3' 32.454245 201.723013 117.088629 2.068514721 -0.208063 188 97 SH5656 5656 snR34 snR34 201 222 30.435092 146.141851 88.2884715 1.945903998 0.063526 188 98 SH20690 20690 YIL133C spliced 183.066155 380.249889 281.658022 2.449722125 0.061503 188 99 SH18189 18189 YML024W_13_225889_226697_INTRON_4_401 intron 34.650555 225.912702 34.650555 192.262147 113.456351 2.054828812 -0.053453 188 100 SH13361 13361 MT COX1 intronic 30.581016 182.28977 30.581016 152.708754 91.644885 1.962108231 0.037845 188 101 SH9108 9108 snR14 / U4 RNA 156-160 + 3' 156 32.703337 155.007943 93.85564 1.972460375 0.162024 188 102 SH7895 7895 snoRNA cluster1 intergenic 30.68047 204.336815 30.68047 174.656345 102.6684075 2.011436826 -0.078592 188 103 SH9955 9955 RUF5-1 RUF5-1 581 598 30.722121 174.559105 102.640613 2.011319237 -0.07549 188 104 SH7314 7314 snR66 snR66 61 80 34.941719 168.932072 101.9368955 2.008331403 0.179757 189 2 SH17931 17931 YLR093C_12_327416_326514_INTRON_17_157 5' exon 30.404698 191.260383 30.404698 161.855685 96.1301915 1.982859807 -0.02128 189 3 SH4420 4420 telomerase RNA telomerase 1136 1155 28.1782 153.36789 90.773045 1.957956904 -0.13566 189 4 SH12644 12644 MT_15S MT_15S 27.981803 167.841719 27.981803 140.859916 84.4208595 1.926449769 -0.084093 189 5 SH4451 4451 telomerase RNA 1291-1301 + 3' 1291 31.774434 157.478819 94.6266265 1.976013357 0.09209 189 6 SH17584 17584 YJL191W_10_73786_74610_INTRON_11_418 intron 29.489965 181.274784 29.489965 152.784819 91.137392 1.959696597 -0.037953 189 7 SH102 102 Ala2 3' flank 31.167213 147.423149 89.295181 1.950828022 0.105785 189 8 SH7054 7054 snR62 snR62 61 80 33.769659 159.100452 96.4350555 1.984234935 0.195528 189 9 SH20175 20175 YDL189W spliced 86.813905 246.007072 166.4104885 2.221180695 0.113287 189 10 SH16468 16468 YER102W_5_362729_363698_INTRON_1_360 5' exon 32.121829 188.051227 32.121829 156.929398 94.5256135 1.975549505 0.115968 189 11 SH19893 19893 snR17A spliced 31.81205 157.160639 94.4863445 1.975369047 0.096356 189 12 SH11975 11975 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6761 6778 6729.033175 4228.187809 5478.610492 3.738670425 0.733213 189 13 SH13139 13139 MT COX1 intronic 33.133556 182.984383 33.133556 150.850827 91.9921915 1.963750965 0.214076 189 14 SH17935 17935 YLR093C_12_327416_326514_INTRON_17_157 intron 34.746035 213.36512 34.746035 179.619085 107.18256 2.030124126 0.069518 189 15 SH17876 17876 YLR048W_12_242233_243350_INTRON_91_449 exon/intron 32.702266 203.442486 32.702266 171.74022 102.221243 2.009541158 0.057816 189 16 SH8138 8138 snoRNA cluster 3; intergenic 56.368583 246.513529 56.368583 191.144946 123.7567645 2.092568947 0.277135 189 17 SH7355 7355 snR68 5' - 13 -4 13 41.555375 191.486556 116.5209655 2.066404075 0.078659 189 18 SH3760 3760 Val4 tRNA 26 40 32.381792 157.361397 94.8715945 1.9771362 0.128243 189 19 SH6246 6246 snR42 snR42 11 26 220.387286 463.739477 342.0633815 2.534106585 -0.076447 189 20 SH18716 18716 YNL130C_14_381156_379555_INTRON_30_470 intron 29.681505 171.958765 29.681505 143.27726 86.4793825 1.93691258 0.026842 189 21 SH17620 17620 YJR094W-A_10_608000_608553_INTRON_3_277 5' exon 28.838978 202.818151 28.838978 174.979173 101.9090755 2.008212862 -0.19618 189 22 SH12049 12049 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7131 7148 32.584933 185.684886 109.1349095 2.037963693 -0.063453 189 23 SH19476 19476 ADH1 29.037553 147.197348 88.1174505 1.945061923 -0.040388 189 24 SH9893 9893 RUF5-1 RUF5-1 271 287 30.994068 171.460545 101.2273065 2.005297681 -0.040818 189 25 SH10512 10512 RUF8 RUF8 486 508 29.270883 194.047108 111.6589955 2.047893717 -0.27348 189 26 SH13604 13604 MT ATP8/AAP1 ATP8 29.387162 186.40624 29.387162 158.019078 93.70312 1.971754052 -0.072488 189 27 SH21688 21688 copy of SH10243 29.49951 145.286081 87.3927955 1.941475632 0.003039 189 28 SH1482 1482 Leu2 3' flank 40.838918 172.610908 106.724913 2.028265809 0.297624 189 29 SH5827 5827 snR35 snR35 321 335 29.69862 161.756783 95.7277015 1.981037631 -0.069547 189 30 SH13873 13873 MT COB intronic 27.893399 200.048888 27.893399 173.155489 100.524444 2.00227168 -0.254854 189 31 SH7164 7164 snR63 3' 31.701256 197.667384 114.68432 2.059504044 -0.201913 189 32 SH86 86 Ala2 tRNA + 3' flank 66 3' flank 26.062028 122.13009 74.096059 1.869795109 -0.11381 189 33 SH12729 12729 MT COX1 Exon1 30.735935 192.037276 30.735935 162.301341 96.518638 1.984611185 -0.001021 189 34 SH17797 17797 YKL186C_11_93537_92746_INTRON_71_233 3' exon 31.606666 212.741081 31.606666 182.134415 106.8705405 2.028858006 -0.06739 189 35 SH8173 8173 snoRNA cluster 3; snR70 29.640672 190.231504 29.640672 161.590832 95.615752 1.980529445 -0.072769 189 36 SH9829 9829 RUF5-1 5' 33.286612 159.092135 96.1893735 1.983127096 0.168648 189 37 SH5237 5237 snR30 snR30 36 50 171.604727 404.325428 287.9650775 2.459339823 -0.119275 189 38 SH16668 16668 YFR032C-A_6_223758_223245_INTRON_1_331 intron 33.18242 184.435783 33.18242 152.253363 92.7178915 1.967163547 0.207428 189 39 SH20728 20728 YJL177W spliced 45.357042 207.435912 126.396477 2.101734969 -0.048891 189 40 SH14118 14118 MT COB intronic 31.445994 196.986214 31.445994 166.54022 98.993107 1.995604955 0.015825 189 41 SH2755 2755 Pro5 3' flank 37.23427 205.547837 121.3910535 2.08418668 -0.14917 189 42 SH9590 9590 RUF3 RUF3 336 355 29.899065 137.28234 83.5907025 1.922157975 0.075532 189 43 SH13223 13223 MT COX1 COX1-ai4 33.907079 176.445243 33.907079 143.538164 88.7226215 1.948034365 0.302278 189 44 SH9806 9806 RUF4 3' 36.061938 200.144134 118.103036 2.072261062 -0.112711 189 45 SH17378 17378 YIL052C_9_257061_256224_INTRON_38_509 intron 38.235615 236.878078 38.235615 199.642463 118.939039 2.075324425 -0.066627 189 46 SH17048 17048 YGR214W_7_920570_921783_INTRON_91_545 intron 36.524928 222.553883 36.524928 187.028955 111.7769415 2.048352222 0.043921 189 47 SH15702 15702 YBR220C_2_663261_662457_INTRON_302_722 intron 36.709274 224.492852 36.709274 188.783578 112.746426 2.052102784 0.027145 189 48 SH7976 7976 snoRNA cluster 2 snR57 29.019831 181.439239 29.019831 153.419408 91.2196195 1.960088256 -0.074662 189 49 SH4477 4477 U3b (snR17b) 5' 33.002093 145.712964 89.3575285 1.951131148 0.233954 189 50 SH9852 9852 RUF5-1 RUF5-1 66 83 31.056086 179.188405 105.1222455 2.021694629 -0.081871 189 51 SH19975 19975 YBL087C spliced 29.060946 148.10425 88.582598 1.947348413 -0.043479 189 52 SH2883 2883 Pro8 5' flank 32.891365 184.671062 108.7812135 2.036553899 -0.043001 189 53 SH13663 13663 MT ATP6 ATP6 29.85602 168.844098 29.85602 139.988078 84.922049 1.929020464 0.057288 189 54 SH4973 4973 snR9 3' 38.477399 180.16524 109.3213195 2.038704865 0.162193 189 55 SH11209 11209 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2931 2949 32.540292 138.166469 85.3533805 1.931220726 0.247789 189 56 SH4318 4318 telomerase RNA telomerase 626 638 30.528404 163.581047 97.0547255 1.987016686 -0.021443 189 57 SH20771 20771 YKL002W spliced 30.482617 202.758363 116.62049 2.066774862 -0.291782 189 58 SH9012 9012 snR17a / U3a U3a 346 362 30.468602 142.098328 86.283465 1.935927577 0.088403 189 59 SH16049 16049 YDL191W_4_117665_118518_INTRON_4_494 intron 29.516409 185.035141 29.516409 156.518732 93.0175705 1.968564992 -0.055652 189 60 SH11951 11951 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6641 6654 28.575573 172.453022 100.5142975 2.002227842 -0.201417 189 61 SH9888 9888 RUF5-1 RUF5-1 246 264 28.596992 137.945987 83.2714895 1.920496333 -0.022001 189 62 SH13916 13916 MT COB Cytbi3 28.608768 202.312045 28.608768 174.703277 101.6560225 2.007133113 -0.209559 189 63 SH14884 14884 MT tRNA Ala tRNA / 3' 28.602838 170.387778 28.602838 142.78494 85.693889 1.932949853 -0.048439 189 64 SH1823 1823 Leu8 3' flank 27.61129 150.86249 89.23689 1.950544426 -0.165628 189 65 SH8765 8765 LSR1 / U2 RNA U2 466 483 101.88912 199.855142 150.872131 2.178609025 0.668633 189 66 SH978 978 Gly1 3' flank 28.439951 179.157877 103.798914 2.01619281 -0.246204 189 67 SH19289 19289 YPL175W_16_218629_220087_INTRON_18_117 exon/intron 30.254053 175.043112 30.254053 145.789059 88.021556 1.944589042 0.053102 189 68 SH9501 9501 RUF2 3' 30.144762 154.425928 92.285345 1.96513274 -0.001032 189 69 SH7964 7964 snoRNA cluster 2 5' 33.842123 195.71888 33.842123 162.876757 98.35944 1.992816047 0.175702 189 70 SH6054 6054 snR37 snR37 186 202 52.757218 217.323476 135.040347 2.130463545 -0.050495 189 71 SH16819 16819 YGL178W_7_167356_170575_INTRON_4_643 intron 32.768354 199.7385 32.768354 167.970146 100.36925 2.001600679 0.084142 189 72 SH6580 6580 snR47 snR47 6 26 26.161509 118.99106 72.5762845 1.860794731 -0.084254 189 73 SH5644 5644 snR34 snR34 141 162 26.214799 122.732138 74.4734685 1.872001581 -0.105934 189 74 SH9199 9199 snR7 U5 RNA 3' 28.211806 152.030506 90.121156 1.954826754 -0.126325 189 75 SH10987 10987 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1821 1838 4497.031467 1425.525526 2961.278497 3.471479253 1.927387 189 76 SH597 597 Gln1 tRNA 26 41 32.392038 141.098903 86.7454705 1.938246807 0.221299 189 77 SH20455 20455 YGL178W spliced 27.791243 111.426699 69.608971 1.842665214 0.094499 189 78 SH14757 14757 MT ORF11; tRNA Leu; tRNA Gln ORF11 32.911745 196.937312 32.911745 165.025567 98.968656 1.995497673 0.110273 189 79 SH13533 13533 MT COX1 intronic 62.922175 283.951064 62.922175 222.028889 142.475532 2.153740287 0.040724 189 80 SH11329 11329 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3531 3544 3438.962968 3296.909041 3367.936005 3.527363831 0.255679 189 81 SH11580 11580 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4786 4802 39.852338 176.104934 107.978636 2.033337837 0.236677 189 82 SH7833 7833 snoRNA cluster1 snR74 106.31552 401.195855 106.31552 295.880335 201.0979275 2.303407595 -0.047769 189 83 SH9113 9113 snR14 / U4 RNA 3' 32.326506 150.936319 91.6314125 1.962044381 0.162498 189 84 SH13270 13270 MT COX1 intronic 28.426085 213.281741 28.426085 185.855656 107.1408705 2.029955171 -0.284406 189 85 SH11259 11259 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3181 3194 123.623592 333.342451 228.4830215 2.358853933 -0.118744 189 86 SH14127 14127 MT COB Exon5 30.71316 204.385091 30.71316 174.671931 102.6925455 2.011538919 -0.076691 189 87 SH4670 4670 snR3 3' 28.678651 151.023611 89.851131 1.953523548 -0.08658 189 88 SH12048 12048 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7126 7139 32.804998 188.798365 110.8016815 2.044546351 -0.083449 189 89 SH7792 7792 snoRNA cluster1 snR75 36.884084 222.08616 36.884084 186.202076 111.54308 2.047442632 0.060494 189 90 SH3788 3788 RNaseP 5' flank 28.535465 127.588661 78.062063 1.892440024 0.036206 189 91 SH8547 8547 snR19 / U1 RNA U1 231 247 106.858682 301.283795 204.0712385 2.3097818 -0.076907 189 92 SH17022 17022 YGR148C_7_788173_787307_INTRON_1_392 intron 406.89482 903.917374 406.89482 498.022554 452.458687 2.655578931 0.535788 189 93 SH19380 19380 YPR043W_16_654161_654842_INTRON_3_405 intron 30.334492 190.666889 30.334492 161.332397 95.8334445 1.981517098 -0.023454 189 94 SH4106 4106 SRP RNA SRP RNA 421 433 34.366805 161.740989 98.053897 1.991464859 0.211572 189 95 SH11245 11245 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3111 3129 10179.56151 11325.02384 10752.29267 4.031501077 -0.298713 189 96 SH12911 12911 MT COX1 COX1ai2 30.25616 188.525854 30.25616 159.269694 94.762927 1.976638467 -0.018396 189 97 SH11250 11250 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3136 3154 5616.622664 8026.663206 6821.642935 3.833888983 -0.520307 189 98 SH13451 13451 MT COX1 intronic 28.269365 162.566994 28.269365 135.297629 81.783497 1.912665677 -0.031162 189 99 SH14181 14181 MT COB Exon6 30.360587 179.073764 30.360587 149.713177 90.036882 1.954420447 0.038881 189 100 SH11920 11920 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6486 6504 228.391917 472.312887 350.352402 2.544505099 -0.066397 189 101 SH2131 2131 Met1 tRNA 41 56 6095.397102 6422.335151 6258.866127 3.796495662 -0.059649 189 102 SH61 61 Ala2 5' flank 30.532825 151.249283 90.891054 1.95852114 0.042352 189 103 SH13298 13298 MT COX1 COX1-ai5a 30.590126 178.499996 30.590126 148.90987 89.749998 1.953034448 0.05887 189 104 SH7496 7496 snR71 3' 30.642952 153.078264 91.860608 1.963129316 0.040086 190 2 SH753 753 Gln4 tRNA 36 50 78.332947 235.52604 156.9294935 2.195704573 0.106552 190 3 SH19775 19775 Negative Control 28.151375 173.196933 100.674154 2.002917989 -0.235943 190 4 SH19481 19481 ADH1 34.04577 186.119274 110.082522 2.041718371 -0.014859 190 5 SH19436 19436 YPR132W_16_794960_795762_INTRON_66_430 3' exon 35.777957 210.121823 35.777957 175.343866 105.5609115 2.023503132 0.145227 190 6 SH10620 10620 RUF8 3' 33.456317 157.792844 95.6245805 1.980569543 0.186486 190 7 SH2082 2082 Lys4 tRNA 76 88 35.100268 209.31455 122.207409 2.087097536 -0.229404 190 8 SH4508 4508 U3b (snR17b) U3b 96 113 38.64862 156.970047 97.8093335 1.9903803 0.424474 190 9 SH17419 17419 YIL111W_9_155219_155762_INTRON_2_89 exon/intron 30.528694 196.869927 30.528694 167.341233 98.9349635 1.995349798 -0.044392 190 10 SH14175 14175 MT COB intronic 30.227058 182.450646 30.227058 153.223588 91.725323 1.96248925 0.010958 190 11 SH18450 18450 YMR143W_13_551927_552902_INTRON_25_568 5' exon 47.009778 266.091781 47.009778 220.082003 133.5458905 2.125630528 -0.157518 190 12 SH9492 9492 RUF2 3' 29.685268 145.846494 87.765881 1.943325717 0.013259 190 13 SH20660 20660 YIL052C spliced 129.026855 307.680865 218.35386 2.339160874 0.0738 190 14 SH19787 19787 Negative Control 32.945303 184.317871 108.631587 2.035956124 -0.037808 190 15 SH15757 15757 YCR031C_3_178212_177492_INTRON_8_314 intron 29.077316 187.11519 29.077316 159.037874 94.057595 1.97339387 -0.099692 190 16 SH3696 3696 Val3 5' flank 30.769838 148.526072 89.647955 1.952540387 0.073117 190 17 SH15503 15503 YBR048W_2_332790_333771_INTRON_46_556 5' exon 30.668449 210.905205 30.668449 181.236756 105.9526025 2.025111629 -0.1169 190 18 SH13870 13870 MT COB intronic 30.612927 187.021971 30.612927 157.409044 94.0109855 1.973178605 0.015451 190 19 SH9017 9017 snR17a / U3a U3a 371 388 30.603734 142.621002 86.612368 1.937579912 0.094749 190 20 SH3561 3561 Tyr2 tRNA 76 88 80.981034 285.757877 183.3694555 2.263326995 -0.24434 190 21 SH13947 13947 MT COB Cytbi3 27.062369 174.284514 27.062369 148.222145 87.642257 1.942713553 -0.19416 190 22 SH10765 10765 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 711 728 65.736845 270.850341 168.293593 2.226067583 -0.32818 190 23 SH8115 8115 snoRNA cluster 3; 5' 32.766776 181.254649 32.766776 149.487873 91.1273245 1.95964862 0.198384 190 24 SH2549 2549 Pro2 5' flank 31.058483 179.692156 105.3753195 2.022738904 -0.084579 190 25 SH6172 6172 snR40 5' 29.339046 149.269025 89.3040355 1.950871084 -0.029742 190 26 SH8589 8589 snR19 / U1 RNA U1 441 458 31.323189 155.420827 93.372008 1.970216699 0.073349 190 27 SH3688 3688 Val3 5' flank 29.58 174.960559 102.2702795 2.009749443 -0.148644 190 28 SH6836 6836 snR52 86-92 + 3' 86 31.561169 140.947024 86.2540965 1.93577973 0.168244 190 29 SH11383 11383 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3801 3819 24451.84981 27965.15113 26208.50047 4.418442173 -0.600893 190 30 SH11363 11363 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3701 3716 35.493455 178.280504 106.8869795 2.028924805 0.107636 190 31 SH15793 15793 YDL061C_4_341182_340627_INTRON_1_408 5' exon 29.863084 172.559639 29.863084 143.696555 86.7798195 1.938418742 0.03741 190 32 SH14151 14151 MT COB intronic 31.73318 209.396491 31.73318 178.663311 105.1982455 2.022008497 -0.038571 190 33 SH6381 6381 snR43 snR43 146 165 29.79058 163.074101 96.4323405 1.984222708 -0.069702 190 34 SH3484 3484 Tyr1 5' flank 29.699462 173.618947 101.6592045 2.007146707 -0.133289 190 35 SH20701 20701 YJL001W spliced 35.202612 185.046099 110.1243555 2.04188338 0.034927 190 36 SH21633 21633 copy of SH7933 33.214994 175.217655 104.2163245 2.017935752 0.057399 190 37 SH20204 20204 YDR025W spliced 275.209635 521.331533 398.270584 2.600178231 -0.013433 190 38 SH4908 4908 snR9 5' 31.245868 156.275122 93.760495 1.972019891 0.063779 190 39 SH11668 11668 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5226 5239 35.004839 205.462362 120.2336005 2.080025853 -0.190875 190 40 SH6273 6273 snR42 snR42 146 165 35.120458 156.889279 96.0048685 1.982293257 0.283067 190 41 SH7766 7766 snoRNA cluster1 snR76 31.547522 204.655124 31.547522 174.107602 102.827562 2.012109539 -0.023297 190 42 SH9601 9601 RUF3 RUF3 391 407 143.884967 329.477461 236.681214 2.374163788 0.060532 190 43 SH13108 13108 MT COX1 COX1ai3 30.074334 189.09228 30.074334 160.017946 95.04614 1.977934484 -0.034702 190 44 SH4628 4628 snR3 snR3 56 73 29.334157 162.49811 95.9161335 1.981891663 -0.098877 190 45 SH4110 4110 SRP RNA SRP RNA 441 453 40.137952 201.623161 120.8805565 2.082356451 -0.060048 190 46 SH6859 6859 snR56 5' 28.744678 138.970776 83.857727 1.923543086 -0.01692 190 47 SH16415 16415 YER056C-A_5_270183_269421_INTRON_38_434 intron 36.680157 195.083675 36.680157 159.403518 98.0418375 1.991411442 0.335892 190 48 SH14930 14930 MT tRNA Asn 5' / tRNA 30.948696 190.852314 30.948696 160.903618 95.926157 1.981937046 0.020302 190 49 SH6642 6642 snR48 snR48 36 52 38.857776 187.631186 113.244481 2.054017046 0.080722 190 50 SH14607 14607 MT 21S rRNA Sce1 endonuc 29.074778 169.117088 29.074778 141.04231 85.058544 1.929717944 -0.004403 190 51 SH7786 7786 snoRNA cluster1 intergenic/snR75 29.045347 168.980166 29.045347 140.934819 84.990083 1.929368253 -0.005942 190 52 SH20055 20055 YBR220C spliced 28.978508 142.841871 85.9101895 1.934044677 -0.021268 190 53 SH4194 4194 telomerase RNA telomerase 6 23 116.690275 322.05203 219.3711525 2.341179517 -0.113616 190 54 SH21567 21567 copy of SH5227 32.673937 191.13953 111.9067335 2.048856219 -0.109041 190 55 SH5661 5661 snR34 snR34 226 240 29.677182 163.164864 96.421023 1.984171735 -0.078067 190 56 SH11850 11850 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6136 6152 83.0191 239.335452 161.177276 2.207303812 0.125959 190 57 SH7528 7528 snR79 5' 28.622866 140.706089 84.6644775 1.927701233 -0.035535 190 58 SH10330 10330 RUF7 RUF7 261 278 28.620863 164.908299 96.764581 1.98571642 -0.161891 190 59 SH3656 3656 Val2 tRNA 21 37 38.29553 158.240581 98.2680555 1.992412362 0.399876 190 60 SH9582 9582 RUF3 RUF3 296 315 27.69437 144.084231 85.8893005 1.933939066 -0.123476 190 61 SH6521 6521 snR46 snR46 96 112 290.087125 510.878529 400.482827 2.602583898 0.083903 190 62 SH13987 13987 MT COB intronic 40.286637 247.189574 40.286637 207.902937 124.094787 2.093753538 -0.127919 190 63 SH13461 13461 MT COX1 intronic 28.650549 197.307806 28.650549 169.657257 99.153903 1.996309814 -0.182739 190 64 SH17214 17214 YHR039C-A_8_187670_187164_INTRON_4_165 3' exon 34.381826 212.30854 34.381826 178.926714 106.65427 2.027978248 0.063412 190 65 SH3350 3350 Thr3 3' flank 50.676842 175.750507 113.2136745 2.053898886 0.394524 190 66 SH8195 8195 snoRNA cluster 3; intergenic 28.404259 176.340613 28.404259 148.936354 88.6703065 1.94777821 -0.095982 190 67 SH16791 16791 YGL103W_7_310965_311925_INTRON_50_560 intron 30.186093 201.911395 30.186093 172.725302 101.4556975 2.006276441 -0.097664 190 68 SH8612 8612 snR19 / U1 RNA U1 556 572 31.951074 162.033903 96.9924885 1.986738102 0.073482 190 69 SH21446 21446 copy of SH84 84.164094 201.580779 142.8724365 2.154948451 0.482168 190 70 SH11521 11521 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4491 4511 2702.876128 1717.510225 2210.193177 3.344430234 0.963521 190 71 SH14420 14420 MT 21S rRNA 21S rRNA3 29.812493 176.011802 29.812493 147.199309 88.505901 1.946972228 0.014791 190 72 SH6807 6807 snR52 5' 29.827736 167.420437 98.6240865 1.993982994 -0.088423 190 73 SH21174 21174 YNL312W spliced 33.676445 175.148743 104.412594 2.018752885 0.074591 190 74 SH19190 19190 YPL079W_16_406631_407534_INTRON_12_432 3' exon 30.017723 198.645022 30.017723 169.627299 99.822511 1.99922849 -0.089732 190 75 SH15744 15744 YCR028C-A_3_173432_172942_INTRON_243_325 3' exon 32.08985 216.474125 32.08985 185.384275 108.7370625 2.036377596 -0.079059 190 76 SH20391 20391 YFL039C spliced 32.30604 168.699705 100.5028725 2.002178475 0.053176 190 77 SH21280 21280 YPL129W spliced 40.306643 208.618511 124.462577 2.095038789 -0.135473 190 78 SH21634 21634 copy of SH8139 79.928798 224.612286 152.270542 2.182615894 0.21928 190 79 SH16988 16988 YGR118W_7_726968_727725_INTRON_66_385 intron 41.022908 213.792298 41.022908 173.76939 107.396149 2.030988709 0.286236 190 80 SH8225 8225 snoRNA cluster 3; snR51/3' 29.474343 209.42163 29.474343 180.947287 105.210815 2.022060385 -0.189517 190 81 SH3523 3523 Tyr1 3' flank 28.748942 160.972436 94.860689 1.977086275 -0.133056 190 82 SH114 114 Arg1 5' flank 30.015171 170.883134 100.4491525 2.001946277 -0.097385 190 83 SH19631 19631 RNA14 2.2 32.291586 199.99716 116.144373 2.064998174 -0.199583 190 84 SH18842 18842 YNL312W_14_48286_49215_INTRON_8_115 5' exon 30.450656 225.324997 30.450656 195.874341 113.1624985 2.053702528 -0.234751 190 85 SH5836 5836 snR35 snR35 366 382 30.596284 185.825872 108.211078 2.034271724 -0.14671 190 86 SH20454 20454 YGL137W spliced 28.616978 177.506395 103.0616865 2.013097245 -0.225195 190 87 SH10340 10340 RUF7 RUF7 311 328 30.709178 178.001856 104.355517 2.018515414 -0.096121 190 88 SH8244 8244 snoRNA cluster4 5' 30.680296 187.652183 30.680296 157.971887 94.3260915 1.974631839 0.017122 190 89 SH16245 16245 YDR381W_4_1236547_1237993_INTRON_286_1051 intron/exon 31.638263 188.515469 31.638263 157.877206 94.7577345 1.976614669 0.081416 190 90 SH16521 16521 YER131W_5_423587_424307_INTRON_1_361 exon/intron 34.618028 239.560031 34.618028 205.942003 120.2800155 2.080193475 -0.203815 190 91 SH17868 17868 YLL050C_12_40413_39803_INTRON_15_193 intron 42.700011 224.425966 42.700011 182.725955 112.712983 2.051973944 0.201985 190 92 SH13181 13181 MT COX1 Exon4 328.41118 802.446317 328.41118 475.035137 401.7231585 2.603926869 0.355441 190 93 SH6151 6151 snR39B 96 + 3' 96 30.191459 134.953856 82.5726575 1.916836262 0.10936 190 94 SH6590 6590 snR47 snR47 56 75 506.710387 786.688576 646.6994815 2.810702513 0.052856 190 95 SH11551 11551 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4641 4659 40.24983 167.275195 103.7625125 2.016040479 0.35573 190 96 SH10431 10431 RUF8 RUF8 81 97 30.084324 165.531824 97.808074 1.990374707 -0.061457 190 97 SH4561 4561 U3b (snR17b) U3b 361 378 30.101619 143.76508 86.9333495 1.939186413 0.053794 190 98 SH7538 7538 snR79 snR79 31 48 38.281728 178.704757 108.4932425 2.035402689 0.176313 190 99 SH7337 7337 snR68 5' 32.228513 151.604243 91.916378 1.963392902 0.152621 190 100 SH257 257 Arg3 3' flank 44.590671 197.474321 121.032496 2.08290199 0.051006 190 101 SH2573 2573 Pro2 101-103 + 3' flank 101 30.324186 165.204106 97.764146 1.990179611 -0.043898 190 102 SH2691 2691 Pro4 3' flank 30.399472 157.808208 94.10384 1.973607346 -0.001121 190 103 SH4146 4146 SRP RNA SRP RNA 621 633 2969.034527 3156.84923 3062.941879 3.486138756 0.132168 190 104 SH17213 17213 YHR039C-A_8_187670_187164_INTRON_4_165 intron/exon 34.710987 200.445114 34.710987 166.734127 100.722557 2.003126742 0.19392 191 2 SH11528 11528 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4526 4543 1639.917179 1260.125602 1450.021391 3.161374409 0.793009 191 3 SH10984 10984 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1806 1826 216.638635 411.56188 314.1002575 2.497068292 0.111332 191 4 SH17002 17002 YGR118W_7_726968_727725_INTRON_66_385 3' exon 138.086649 485.458481 138.086649 348.371832 243.2292405 2.386015784 -0.08497 191 5 SH17785 17785 YKL180W_11_109271_110131_INTRON_310_615 3' exon 31.742835 183.08686 31.742835 152.344025 92.04343 1.963992794 0.117165 191 6 SH16800 16800 YGL137W_7_249872_252741_INTRON_19_218 intron 33.45183 210.633272 33.45183 178.181442 105.816636 2.024553951 0.037606 191 7 SH2126 2126 Met1 tRNA 16 30 652.009264 921.994252 787.001758 2.895975702 0.110823 191 8 SH10157 10157 RUF6 RUF6 631 653 28.9058 172.969464 100.937632 2.004053112 -0.180117 191 9 SH18301 18301 YML073C_13_124172_123227_INTRON_16_430 intron 63.513418 304.61979 63.513418 242.106372 152.809895 2.184151477 -0.130315 191 10 SH13519 13519 MT COX1 intronic 30.261818 175.682902 30.261818 146.421084 88.341451 1.946164528 0.050131 191 11 SH5823 5823 snR35 snR35 301 321 29.990224 125.549676 77.76995 1.89081182 0.151821 191 12 SH3378 3378 Thr4 5' flank 29.741258 159.377783 94.5595205 1.975705261 -0.054567 191 13 SH17303 17303 YHR203C_8_505526_504472_INTRON_15_283 exon/intron 36.982486 223.789856 36.982486 187.80737 112.394928 2.050746713 0.043683 191 14 SH16916 16916 YGL251C_7_31636_27921_INTRON_59_210 intron 29.319647 203.606704 29.319647 175.287057 102.303352 2.009889864 -0.167065 191 15 SH11862 11862 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6196 6213 40.215859 155.731983 97.973921 1.991110489 0.485454 191 16 SH20489 20489 YGL232W spliced 29.017585 158.960759 93.989172 1.973077824 -0.103566 191 17 SH2850 2850 Pro7 tRNA-intron/exon 56 71 62.852898 270.943557 166.8982275 2.222451724 -0.367901 191 18 SH21034 21034 YMR125W spliced 108.409301 311.150205 209.779753 2.32176357 -0.123478 191 19 SH18699 18699 YNL130C_14_381156_379555_INTRON_30_470 intron 29.763516 184.045178 29.763516 155.281662 92.522589 1.966247777 -0.031923 191 20 SH19647 19647 SIR1 2.2 29.791195 177.521504 103.6563495 2.01559591 -0.150109 191 21 SH271 271 Arg4 5' flank 28.941555 168.765007 98.853281 1.994991088 -0.157494 191 22 SH18363 18363 YMR079W_13_424988_426058_INTRON_10_165 5' exon 29.031833 201.120155 29.031833 173.088322 101.0600775 2.004579627 -0.172681 191 23 SH13995 13995 MT COB intronic 27.303134 167.718565 27.303134 141.415431 84.3592825 1.926132877 -0.138871 191 24 SH19389 19389 YPR043W_16_654161_654842_INTRON_3_405 intron 31.112874 211.836257 31.112874 181.723383 106.4181285 2.027015617 -0.092729 191 25 SH15230 15230 MT COX3 cox3 31.24861 172.000786 31.24861 141.752176 86.500393 1.937018081 0.142975 191 26 SH18038 18038 YLR333C_12_796335_795573_INTRON_1_423 exon/intron 29.518822 190.33754 29.518822 161.818718 95.66877 1.98077019 -0.08246 191 27 SH11485 11485 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4311 4328 670.452061 609.771935 640.111998 2.806255968 0.819535 191 28 SH16822 16822 YGL178W_7_167356_170575_INTRON_4_643 intron 31.620551 189.709096 31.620551 159.088545 95.354548 1.979341412 0.072682 191 29 SH16109 16109 YDR064W_4_579453_580447_INTRON_22_560 intron 29.823694 199.051283 29.823694 170.227589 100.0256415 2.000111345 -0.105443 191 30 SH6173 6173 snR40 5' 29.872973 143.648357 86.760665 1.938322872 0.038369 191 31 SH19834 19834 Negative Control 31.769049 175.176435 103.472742 2.014825958 -0.016434 191 32 SH14163 14163 MT COB intronic 26.078801 163.497422 26.078801 138.418621 82.248711 1.9151291 -0.216462 191 33 SH5955 5955 snR36 snR36 231 250 29.766932 170.957495 100.3622135 2.001570231 -0.113352 191 34 SH16991 16991 YGR118W_7_726968_727725_INTRON_66_385 intron 29.657546 195.138359 29.657546 166.480813 98.0691795 1.991532542 -0.095739 191 35 SH15888 15888 YDL082W_4_308423_309387_INTRON_5_369 intron 29.5366 175.214553 29.5366 146.677953 88.1072765 1.945011777 -0.001745 191 36 SH11400 11400 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3886 3901 36.871096 152.846987 94.8590415 1.977078732 0.400522 191 37 SH13730 13730 MT COB Exon1 29.356184 181.149061 29.356184 152.792877 91.0745305 1.959396941 -0.047432 191 38 SH19115 19115 YPL031C_16_493033_492014_INTRON_18_119 5' exon 31.19254 202.642786 31.19254 172.450246 101.821393 2.007839034 -0.034733 191 39 SH7965 7965 snoRNA cluster 2 5' 30.314194 170.492917 30.314194 141.178723 85.7464585 1.933216192 0.082762 191 40 SH21761 21761 copy of SH13393 843.591451 1648.741914 1246.166683 3.095576136 -0.496457 191 41 SH6955 6955 snR58 3' 35.282563 147.651522 91.4670425 1.961264637 0.353332 191 42 SH20141 20141 YDL108W spliced 1261.074627 2122.262592 1691.66861 3.228315291 -0.372912 191 43 SH1455 1455 Leu2 tRNA-intron 46 60 41.485678 186.25723 113.871454 2.056414866 0.140928 191 44 SH13812 13812 MT COB Cytbi2 26.465345 182.970818 26.465345 157.505473 91.985409 1.963718944 -0.288484 191 45 SH313 313 Arg5 5' flank 30.489058 203.443324 116.966191 2.068060347 -0.29722 191 46 SH8055 8055 snoRNA cluster 2 intergenic 28.730346 179.562729 28.730346 151.832383 90.2813645 1.955598114 -0.087044 191 47 SH1565 1565 Leu4 5' flank - tRNA12 12 96.36386 245.747069 171.0554645 2.233136953 0.212861 191 48 SH20646 20646 YHR203C spliced 36.777126 180.816637 108.7968815 2.036616447 0.122358 191 49 SH1427 1427 Leu2 5' flank 30.978295 175.152911 103.065603 2.013113749 -0.063417 191 50 SH11708 11708 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5426 5441 414.879756 547.225483 481.0526195 2.682192584 0.402722 191 51 SH11853 11853 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6151 6170 29.013944 140.402655 84.7082995 1.927925963 -0.005272 191 52 SH7415 7415 snR69 5' 30.908064 167.444361 99.1762125 1.996407519 -0.021931 191 53 SH12615 12615 MT_15S MT_15S 28.882518 189.098907 28.882518 161.216389 95.0494535 1.977949624 -0.124663 191 54 SH17665 17665 YKL006C-A_11_430270_429836_INTRON_37_177 exon/intron 28.806029 190.184114 28.806029 162.378085 95.592057 1.980421807 -0.135982 191 55 SH2415 2415 Phe4 3' flank 32.617326 151.077204 91.847265 1.963066229 0.180329 191 56 SH9142 9142 snR7 U5 RNA 5' 26.772736 122.75095 74.761843 1.873679999 -0.062883 191 57 SH21420 21420 Trp1 spliced 81.192039 226.452196 153.8221175 2.187018786 0.216865 191 58 SH7081 7081 snR63 5' 26.774471 154.505182 90.6398265 1.957319066 -0.249038 191 59 SH10446 10446 RUF8 RUF8 156 174 28.732717 161.722195 95.227456 1.978762182 -0.137992 191 60 SH732 732 Gln4 5' flank 28.758389 177.929604 103.3439965 2.014285252 -0.2184 191 61 SH10617 10617 RUF8 3' 43.338098 202.929507 123.1338025 2.090377291 -0.028411 191 62 SH8660 8660 LSR1 / U2 RNA 5' 26.823972 125.313807 76.0688895 1.881207076 -0.076092 191 63 SH10483 10483 RUF8 RUF8 341 358 34.528195 187.345927 110.937061 2.045076656 -0.009089 191 64 SH971 971 Gly1 3' flank 28.642476 165.193229 96.9178525 1.986403783 -0.161723 191 65 SH12469 12469 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 2470.338981 5032.345397 2470.338981 2563.006416 2516.672699 3.400826738 0.218326 191 66 SH7451 7451 snR69 3' 30.31141 182.088254 106.199832 2.02612383 -0.143553 191 67 SH1420 1420 Leu1 3' flank 30.152142 171.780964 100.966553 2.00417753 -0.094198 191 68 SH2874 2874 Pro7 3' flank 28.10201 141.115321 84.6086655 1.927414845 -0.076476 191 69 SH2975 2975 Ser1 3' flank 27.976782 143.597715 85.7872485 1.933422739 -0.099472 191 70 SH21071 21071 YMR225C spliced 67.556678 242.56442 155.060549 2.190501317 -0.081486 191 71 SH9995 9995 RUF5-1 3' 47.612113 192.616553 120.114333 2.079594834 0.148709 191 72 SH9506 9506 RUF3 5' 155.418853 364.219386 259.8191195 2.414671107 -0.040195 191 73 SH3117 3117 Ser4 5' flank - tRNA7 7 31.70085 164.263119 97.9819845 1.991146231 0.044902 191 74 SH16178 16178 YDR305C_4_1073479_1072737_INTRON_88_176 intron 29.94118 165.314528 29.94118 136.373348 83.157264 1.919900192 0.083674 191 75 SH4150 4150 SRP RNA SRP RNA 641 656 39.631808 198.991571 119.3116895 2.076682996 -0.03764 191 76 SH11989 11989 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S/3'ETS 6831 6853 24.575422 109.980109 67.2777655 1.827871559 -0.146355 191 77 SH11096 11096 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2366 2379 437.642391 769.258983 603.450687 2.780641786 -0.093403 191 78 SH19756 19756 Negative Control 40.553071 185.285297 112.919184 2.052767731 0.138335 191 79 SH1367 1367 Leu1 5' flank 31.090066 187.450894 109.27048 2.038502851 -0.135683 191 80 SH8277 8277 snoRNA cluster4 snR67/intergenic 27.422104 198.649617 27.422104 172.227513 99.8248085 1.999238486 -0.285866 191 81 SH18158 18158 YLR426W_12_987057_988108_INTRON_81_151 intron 31.678459 214.575461 31.678459 183.897002 107.7877305 2.032569328 -0.080924 191 82 SH13133 13133 MT COX1 COX1ai3 27.925986 197.877421 27.925986 170.951435 99.4387105 1.997555484 -0.242054 191 83 SH19280 19280 YPL143W_16_282121_282969_INTRON_20_544 intron 29.16222 185.550158 29.16222 157.387938 93.275079 1.969765626 -0.085192 191 84 SH522 522 Cys1 5' flank 32.418436 159.543707 95.9810715 1.982185594 0.116364 191 85 SH18323 18323 YML085C_13_99400_97941_INTRON_26_141 intron/exon 30.510134 198.041937 30.510134 168.531803 99.5209685 1.997914594 -0.052732 191 86 SH16949 16949 YGR027C_7_534779_534126_INTRON_1_312 intron 28.526513 151.786194 28.526513 124.259681 76.393097 1.883054117 0.057471 191 87 SH20778 20778 YKL006C-A spliced 36.788239 189.507504 113.1478715 2.053646389 0.02033 191 88 SH18040 18040 YLR333C_12_796335_795573_INTRON_1_423 intron 34.673948 214.283569 34.673948 180.609621 107.6417845 2.031980889 0.05775 191 89 SH17743 17743 YKL157W_11_154993_158183_INTRON_282_664 5' exon 32.519259 203.319466 32.519259 171.800207 102.159733 2.009279749 0.04697 191 90 SH18762 18762 YNL162W_14_331319_332151_INTRON_5_516 intron/exon 30.349681 196.421061 30.349681 167.07138 98.7105305 1.994363486 -0.053747 191 91 SH49 49 Ala1 3' flank 30.223414 140.686248 85.454831 1.93173662 0.079169 191 92 SH9552 9552 RUF3 RUF3 146 160 57.594179 206.802062 132.1981205 2.121225281 0.121457 191 93 SH2264 2264 Phe2 5' flank 27.984921 178.697626 103.3412735 2.014273809 -0.273742 191 94 SH9676 9676 RUF4 RUF4 156 173 29.937455 171.794222 100.8658385 2.003744103 -0.107634 191 95 SH20518 20518 YGR034W spliced 29.901123 159.651235 94.776179 1.976699196 -0.044831 191 96 SH3719 3719 Val3 3' flank 28.888668 128.745451 78.8170595 1.896620228 0.054026 191 97 SH11330 11330 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3536 3552 22351.47243 35007.81627 28679.64435 4.457573761 -1.074129 191 98 SH4448 4448 telomerase RNA telomerase 1276 1288 382.056127 717.294249 549.675188 2.740106134 -0.146826 191 99 SH2829 2829 Pro7 5' flank 32.057432 195.534637 113.7960345 2.056127128 -0.170223 191 100 SH9514 9514 RUF3 5' 32.143359 183.9821 108.0627295 2.033675933 -0.064252 191 101 SH3712 3712 Val3 tRNA 41 53 65.105358 239.897692 152.501525 2.183274187 -0.090565 191 102 SH12506 12506 MT_tRNA Pro 3' 28.24689 175.319358 28.24689 148.072468 88.159679 1.94527 -0.10315 191 103 SH4535 4535 U3b (snR17b) U3b 231 243 34.523781 202.396212 118.4599965 2.073571715 -0.167919 191 104 SH12715 12715 MT ORF 8 (hypothetical) ORF8 / 3' 28.42395 189.831357 28.42395 162.407407 95.4156785 1.979619743 -0.163839 192 2 SH16999 16999 YGR118W_7_726968_727725_INTRON_66_385 intron 32.405234 192.917601 32.405234 161.512367 96.9588005 1.986587234 0.103143 192 3 SH13371 13371 MT COX1 intronic 28.127756 160.120014 28.127756 132.992258 80.560007 1.906119495 -0.027767 192 4 SH18220 18220 YML026C_13_223828_222987_INTRON_48_448 5' exon 31.995552 223.536192 31.995552 192.54064 112.268096 2.050256357 -0.146499 192 5 SH12792 12792 MT COX1 COX1ai1 31.744311 225.32042 31.744311 194.576109 113.16021 2.053693745 -0.173689 192 6 SH6453 6453 snR45 snR45 111 127 33.461158 149.998429 91.7297935 1.962510416 0.238226 192 7 SH15734 15734 YBR230C_2_680008_679507_INTRON_12_108 intron/exon 39.07579 255.767064 39.07579 217.691274 128.383532 2.10850932 -0.25137 192 8 SH2112 2112 Met1 5' flank 32.837513 156.368158 94.6028355 1.975904154 0.160802 192 9 SH11312 11312 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3446 3463 46970.63786 37702.41805 42336.52795 4.626715238 -0.227743 192 10 SH17891 17891 YLR048W_12_242233_243350_INTRON_91_449 intron 34.152161 217.655603 34.152161 184.503442 109.3278015 2.038730615 0.003592 192 11 SH15387 15387 YBL040C_2_142830_142074_INTRON_23_119 5' exon 33.86181 222.372451 33.86181 189.510641 111.6862255 2.047999614 -0.051821 192 12 SH17614 17614 YJR021C_10_469271_468247_INTRON_317_396 intron 35.482725 228.435143 35.482725 193.952418 114.7175715 2.059629945 -0.055726 192 13 SH15829 15829 YDL075W_4_322225_322987_INTRON_58_478 5' exon 31.484461 210.914674 31.484461 180.430213 105.957337 2.025131035 -0.063279 192 14 SH18218 18218 YML025C_13_225365_224406_INTRON_28_126 3' exon 31.284126 222.629511 31.284126 192.345385 111.8147555 2.048499118 -0.171724 192 15 SH21916 21916 copy of SH19999 36.663804 166.598029 101.6309165 2.007025842 0.260865 192 16 SH7216 7216 snR64 3' 30.971702 171.950207 101.4609545 2.006298944 -0.045065 192 17 SH11740 11740 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5586 5603 121.75562 335.387423 228.5715215 2.359022119 -0.14581 192 18 SH17711 17711 YKL081W_11_282533_284097_INTRON_206_531 intron 32.634268 188.875236 32.634268 157.240968 94.937618 1.977438331 0.14354 192 19 SH16914 16914 YGL251C_7_31636_27921_INTRON_59_210 exon/intron 34.440393 210.033391 34.440393 176.592998 105.5166955 2.023321182 0.087605 192 20 SH13648 13648 MT ATP6 ATP6 34.459647 184.61201 34.459647 151.152363 92.806005 1.967576078 0.285406 192 21 SH8603 8603 snR19 / U1 RNA U1 511 528 49.228288 197.198705 123.2134965 2.090658282 0.117025 192 22 SH19750 19750 Negative Control 41.981929 195.417282 118.6996055 2.074449276 0.038353 192 23 SH18622 18622 YNL096C_14_444312_443395_INTRON_145_489 intron 29.199716 186.800283 29.199716 158.600567 93.9001415 1.972666247 -0.088743 192 24 SH19699 19699 Negative Control 34.872709 193.96027 114.4164895 2.058488619 -0.068083 192 25 SH76 76 Ala2 16-28 16 28 25.724473 154.877965 90.301219 1.955693613 -0.335173 192 26 SH12171 12171 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7741 7764 29.562529 145.736112 87.6493205 1.942748554 0.005123 192 27 SH6298 6298 snR42 snR42 271 285 33.428019 184.488404 108.9582115 2.037259966 -0.021944 192 28 SH9238 9238 snR6 / U6 RNA U6 61 73 34.481201 187.342401 110.911801 2.044977757 -0.010689 192 29 SH18464 18464 YMR143W_13_551927_552902_INTRON_25_568 intron 31.735773 210.365888 31.735773 179.630115 105.682944 2.024004903 -0.043901 192 30 SH15073 15073 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.887369 190.296495 29.887369 161.409126 95.6482475 1.980677017 -0.054656 192 31 SH21299 21299 YPL198W spliced 31.767998 178.439938 105.103968 2.021619112 -0.03525 192 32 SH16300 16300 YDR450W_4_1359912_1360787_INTRON_48_482 intron 29.828244 207.300503 29.828244 178.472259 104.1502515 2.017660323 -0.153212 192 33 SH14395 14395 MT 21S rRNA 21S rRNA3 44.790173 244.768375 44.790173 200.978202 122.8841875 2.089496002 0.014272 192 34 SH8177 8177 snoRNA cluster 3; snR70 96.37547 426.552975 96.37547 331.177505 213.7764875 2.329959937 -0.358482 192 35 SH492 492 Asp2 tRNA 21 35 916.400339 1725.691813 1321.046076 3.120917965 -0.462009 192 36 SH9480 9480 RUF2 RUF2 241 260 31.245679 154.030748 92.6382135 1.966790171 0.075485 192 37 SH10486 10486 RUF8 RUF8 356 374 49.761787 217.556954 133.6593705 2.125999411 -0.093042 192 38 SH10030 10030 RUF6 5' - 12 -4 12 33.032822 170.363224 101.698023 2.00731251 0.084796 192 39 SH2787 2787 Pro6 tRNA-exon/intron 26 38 31.246969 148.280664 89.7638165 1.953101309 0.106391 192 40 SH12164 12164 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7706 7721 1994.910068 2542.111921 2268.510995 3.355740888 -0.051001 192 41 SH4161 4161 SRP RNA 3' 73.987689 247.446939 160.717314 2.206062666 -0.042732 192 42 SH17428 17428 YIL133C_9_99416_98527_INTRON_32_321 exon/intron 31.782201 189.748597 31.782201 158.966396 95.3742985 1.979431357 0.082994 192 43 SH11341 11341 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3591 3608 41994.17354 36582.28338 39288.22846 4.594262447 -0.32536 192 44 SH10108 10108 RUF6 RUF6 386 405 30.31755 188.339976 109.328763 2.038734434 -0.177472 192 45 SH7557 7557 snR79 3' 28.581031 156.797989 92.68951 1.967030586 -0.123928 192 46 SH12424 12424 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.604501 207.066618 32.604501 175.462117 104.033309 2.017172412 0.030436 192 47 SH10677 10677 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 271 287 77.711424 243.161487 160.4364555 2.205303059 0.035707 192 48 SH21207 21207 YOR096W spliced 32.834204 209.598655 121.2164295 2.083561487 -0.279575 192 49 SH6067 6067 snR37 snR37 251 268 30.933076 157.742522 94.337799 1.974685739 0.035328 192 50 SH15692 15692 YBR220C_2_663261_662457_INTRON_302_722 5' exon 30.942948 203.595807 30.942948 173.652859 102.2979035 2.009866733 -0.056812 192 51 SH14240 14240 MT tRNA Ser 5' 27.016025 163.789327 27.016025 137.773302 82.3946635 1.915899084 -0.139975 192 52 SH17929 17929 YLR078C_12_286560_285737_INTRON_4_92 3' exon 36.717742 230.603884 36.717742 194.886142 115.801942 2.063715843 -0.04198 192 53 SH10384 10384 RUF7 3' 30.802588 175.513648 103.158118 2.01350341 -0.07614 192 54 SH4960 4960 snR9 3' 31.713675 161.918255 96.815965 1.985946979 0.060266 192 55 SH19507 19507 ACT1 32.640552 181.253476 106.947014 2.029168663 -0.02065 192 56 SH12695 12695 MT ORF 8 (hypothetical) 5' / ORF8 28.749912 189.354891 28.749912 161.604979 95.1774455 1.978534044 -0.136163 192 57 SH13400 13400 MT COX1 intronic 30.699574 221.617161 30.699574 191.917587 111.3085805 2.046528644 -0.190562 192 58 SH18619 18619 YNL096C_14_444312_443395_INTRON_145_489 5' exon 34.616333 231.667856 34.616333 198.051523 116.333928 2.065706392 -0.118765 192 59 SH20751 20751 YJR021C spliced 34.663393 186.269897 110.466645 2.043231164 0.005312 192 60 SH3563 3563 Tyr2 86-89 + 3' flank 86 28.865017 139.197544 84.0312805 1.924440982 -0.009392 192 61 SH593 593 Gln1 tRNA 6 23 64.050305 204.585053 134.317679 2.128133179 0.225001 192 62 SH11421 11421 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3991 4009 109.837218 245.190943 177.5140805 2.249232807 0.342332 192 63 SH21406 21406 Ser3 spliced 5921.936366 4075.933577 4998.934972 3.698877487 0.625907 192 64 SH4171 4171 SRP RNA 3' 77.348649 210.498713 143.923681 2.158132258 0.322138 192 65 SH7436 7436 snR69 snR69 81 98 30.504129 146.693441 88.598785 1.947427766 0.065176 192 66 SH9495 9495 RUF2 3' 28.419012 156.567649 92.4933305 1.966110418 -0.134535 192 67 SH9384 9384 RUF1 RUF1 496 513 35.868686 208.275473 122.0720795 2.086616343 -0.203245 192 68 SH6395 6395 snR43 3' 28.080679 120.757012 74.4188455 1.871682928 0.048771 192 69 SH10057 10057 RUF6 RUF6 131 150 29.822688 186.12248 107.972584 2.033313495 -0.196204 192 70 SH18408 18408 YMR125W_13_517538_520445_INTRON_26_347 intron 29.717206 184.393163 29.717206 155.675957 92.6965815 1.967063718 -0.037209 192 71 SH9360 9360 RUF1 RUF1 376 392 27.795286 145.868182 86.831734 1.938678474 -0.125405 192 72 SH18689 18689 YNL112W_14_413636_416278_INTRON_1274_2275 intron 105.872174 423.059177 105.872174 318.187003 212.0295885 2.32639647 -0.189317 192 73 SH7597 7597 snR189 snR189 56 68 33.512463 177.656457 105.58446 2.023600003 0.044755 192 74 SH16004 16004 YDL137W_4_216158_217074_INTRON_1_332 intron 33.650343 217.087799 33.650343 184.437456 109.0438995 2.037601374 -0.013537 192 75 SH8764 8764 LSR1 / U2 RNA U2 461 480 31.937664 174.110883 103.0242735 2.012939561 -0.00034 192 76 SH3213 3213 Thr1 5' flank 30.240918 166.121385 98.1811515 1.992028121 -0.054664 192 77 SH5098 5098 snR11 snR11 91 112 28.548157 147.104935 87.826546 1.943625803 -0.075697 192 78 SH2225 2225 Phe1 tRNA 1 13 34.613143 168.109368 101.3612555 2.005871981 0.176677 192 79 SH8822 8822 LSR1 / U2 RNA U2 751 765 31.005596 159.390786 95.198191 1.978628696 0.031767 192 80 SH21029 21029 YMR116C spliced 39.210254 200.496087 119.8531705 2.078649527 -0.061271 192 81 SH10913 10913 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1451 1464 238.994545 451.688678 345.3416115 2.538248911 0.063284 192 82 SH20540 20540 YGR183C spliced 29.845584 152.565163 91.2053735 1.960020426 -0.011911 192 83 SH20349 20349 YER102W spliced 65.6877 241.442898 153.565299 2.18629309 -0.096012 192 84 SH8413 8413 snoRNA cluster 5 snR190 32.291595 219.249121 32.291595 187.957526 110.1245605 2.041884188 -0.094813 192 85 SH6950 6950 snR58 3' 28.330534 133.857922 81.094228 1.908989944 -0.018273 192 86 SH3632 3632 Val2 5' flank 35.564885 199.489549 117.527217 2.070138452 -0.115395 192 87 SH811 811 Glu1 71-72 + 3' flank 71 92 26.33373 114.028044 70.180887 1.846218853 -0.035222 192 88 SH19055 19055 YOR234C_15_779404_778554_INTRON_20_546 intron 30.370253 176.955575 30.370253 147.585322 88.9777875 1.949281602 0.051138 192 89 SH9110 9110 snR14 / U4 RNA 3' 30.267806 137.50479 83.886298 1.923691029 0.100086 192 90 SH19898 19898 snR17A spliced 36.238752 163.723678 99.981215 1.99991841 0.276264 192 91 SH19974 19974 YBL087C spliced 28.996836 157.403041 93.1999385 1.969415626 -0.097073 192 92 SH13670 13670 MT ATP6 ATP6 29.885438 203.095723 29.885438 174.210285 102.0478615 2.008803908 -0.125074 192 93 SH5420 5420 snR31 snR31 166 178 37.828134 172.045128 104.936631 2.020927117 0.244026 192 94 SH16186 16186 YDR367W_4_1212837_1213603_INTRON_31_131 intron 46.795761 224.441373 46.795761 178.645612 112.7206865 2.052003625 0.308563 192 95 SH15588 15588 YBR084C-A_2_415219_414144_INTRON_3_508 intron 31.695691 218.973863 31.695691 188.278172 109.9869315 2.041341086 -0.120003 192 96 SH8739 8739 LSR1 / U2 RNA U2 336 352 39.728154 157.477576 98.602865 1.993889534 0.452029 192 97 SH15489 15489 YBL092W_2_45639_46364_INTRON_1_333 intron 31.743058 208.175764 31.743058 177.432706 104.587882 2.019481368 -0.030967 192 98 SH18355 18355 YMR033W_13_337787_339276_INTRON_31_116 5' exon 29.801555 186.854704 29.801555 158.053149 93.927352 1.972792079 -0.043603 192 99 SH11774 11774 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5756 5773 1117.371497 1055.437712 1086.404605 3.035991598 0.578043 192 100 SH2458 2458 Phe5 tRNA 61 75 5814.682792 4839.083837 5326.883315 3.726473184 0.329453 192 101 SH11518 11518 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4476 4494 54.639754 205.680294 130.160024 2.11447762 0.094634 192 102 SH5605 5605 snR34 5' 30.233591 148.632523 89.433057 1.951498076 0.03605 192 103 SH3602 3602 Val1 tRNA 6 18 38.61528 172.191602 105.403441 2.022854789 0.26331 192 104 SH4665 4665 snR3 3' 30.489119 162.524663 96.506891 1.984558325 -0.018867 193 2 SH18873 18873 YNR053C_14_723108_721117_INTRON_811_1341 intron 32.409818 193.832252 32.409818 162.422434 97.416126 1.988630855 0.097698 193 3 SH810 810 Glu1 66-72 + 3' flank 66 85 28.131138 126.183738 77.157438 1.887377799 0.016032 193 4 SH3356 3356 Thr3 3' flank 32.001297 207.03445 119.5178735 2.077432857 -0.270945 193 5 SH2267 2267 Phe2 5' flank 31.75473 161.20137 96.47805 1.984428517 0.067193 193 6 SH15484 15484 YBL092W_2_45639_46364_INTRON_1_333 intron 29.496282 191.2286 29.496282 162.732318 96.1143 1.982788007 -0.088606 193 7 SH9662 9662 RUF4 RUF4 86 102 39.112388 168.068816 103.590602 2.015320357 0.323479 193 8 SH10302 10302 RUF7 RUF7 121 138 30.92782 135.190575 83.0591975 1.919387731 0.158744 193 9 SH11912 11912 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6446 6467 127.529481 276.047236 201.7883585 2.304896107 0.264811 193 10 SH10968 10968 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1726 1743 1100.131297 1078.143881 1089.137589 3.037082747 0.524009 193 11 SH7770 7770 snoRNA cluster1 snR76/intergenic 30.156439 183.740712 30.156439 154.584273 92.370356 1.965532617 -0.001058 193 12 SH4533 4533 U3b (snR17b) U3b 221 237 35.615928 166.644105 101.1300165 2.004880078 0.225662 193 13 SH3534 3534 Tyr2 5' flank 29.741423 161.687767 95.714595 1.980978166 -0.066213 193 14 SH15837 15837 YDL075W_4_322225_322987_INTRON_58_478 intron 27.69973 181.684263 27.69973 154.984533 91.3421315 1.960671142 -0.179901 193 15 SH16357 16357 YDR500C_4_1450856_1450201_INTRON_8_396 intron 31.271739 203.903907 31.271739 173.632168 102.4519535 2.010520244 -0.036933 193 16 SH3461 3461 Trp1 3' flank 39.474076 204.525014 121.999545 2.086358211 -0.102713 193 17 SH10952 10952 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1646 1664 16282.08887 10195.64509 13238.86698 4.121850818 0.476319 193 18 SH2653 2653 Pro4 5' flank 27.285794 136.501652 81.893723 1.913250615 -0.111855 193 19 SH4848 4848 snR8 snR8 21 37 57.67017 197.194534 127.432352 2.105279699 0.224347 193 20 SH10653 10653 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 151 168 40.134528 190.930808 115.532668 2.062704803 0.064422 193 21 SH9356 9356 RUF1 RUF1 356 378 29.129564 155.481108 92.305336 1.965226808 -0.077643 193 22 SH12202 12202 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7896 7913 38.419733 183.095956 110.7578445 2.044374495 0.12599 193 23 SH9666 9666 RUF4 RUF4 106 121 31.126673 155.503824 93.3152485 1.969952617 0.059855 193 24 SH14452 14452 MT 21S rRNA 21S rRNA3 101.127132 391.49411 101.127132 291.366978 196.247055 2.292803148 -0.068008 193 25 SH20976 20976 YML034W spliced 55.650868 200.668233 128.1595505 2.107750976 0.161462 193 26 SH11530 11530 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4536 4555 917.102851 1579.632384 1248.367618 3.096342495 -0.320269 193 27 SH14942 14942 MT tRNA Met 5' 25.964962 139.074386 25.964962 114.109424 70.037193 1.845328732 -0.064732 193 28 SH21421 21421 Trp1 spliced 88.515912 231.876448 160.19618 2.204652156 0.247157 193 29 SH15507 15507 YBR048W_2_332790_333771_INTRON_46_556 intron 37.419112 246.487663 37.419112 210.068551 123.7438315 2.092523559 -0.195914 193 30 SH4401 4401 telomerase RNA telomerase 1041 1057 31.780264 145.489473 88.6348685 1.947604605 0.156905 193 31 SH3051 3051 Ser3 5' flank 29.873475 174.739622 102.3065485 2.009903433 -0.128905 193 32 SH19203 19203 YPL081W_16_404945_406039_INTRON_8_508 intron 29.810548 185.581025 29.810548 156.770477 93.2905125 1.969837479 -0.036376 193 33 SH20190 20190 YDL219W spliced 29.71153 167.55634 98.633935 1.99402636 -0.097181 193 34 SH708 708 Gln3 71-72 + 3' flank 71 3' flank 29.592731 145.980234 87.7864825 1.943427648 0.005969 193 35 SH6683 6683 snR49 5' 25.756499 119.655067 72.705783 1.861568956 -0.12089 193 36 SH19038 19038 YOR234C_15_779404_778554_INTRON_20_546 intron 51.726055 238.228108 51.726055 187.502053 119.614054 2.07778221 0.261923 193 37 SH15970 15970 YDL130W_4_229906_230527_INTRON_115_415 3' exon 91.856529 376.853652 91.856529 285.997123 188.926826 2.276293628 -0.126018 193 38 SH4018 4018 SRP RNA 5' 31.220964 141.549461 86.3852125 1.936439406 0.142297 193 39 SH44 44 Ala1 3' flank 33.172199 185.187292 109.1797455 2.038142078 -0.037527 193 40 SH16861 16861 YGL187C_7_150529_149708_INTRON_1_342 intron 86.958742 357.172911 86.958742 271.214169 179.0864555 2.253062741 -0.07555 193 41 SH15421 15421 YBL059W_2_110555_111205_INTRON_287_355 3' exon 42.964305 232.577654 42.964305 190.613349 116.788827 2.067401297 0.109115 193 42 SH13159 13159 MT COX1 intronic 29.035826 196.214704 29.035826 168.178878 98.607352 1.993909296 -0.147927 193 43 SH10672 10672 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 246 263 32.098387 150.351886 91.2251365 1.960114522 0.150944 193 44 SH4031 4031 SRP RNA SRP RNA 46 66 28.468116 148.067951 88.2680335 1.945803451 -0.086695 193 45 SH11418 11418 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3976 3989 43.119996 163.703513 103.4117545 2.014569906 0.451469 193 46 SH3756 3756 Val4 tRNA 6 21 492.47178 764.25777 628.364775 2.798211831 0.064548 193 47 SH1442 1442 Leu2 5' flank 32.738031 168.239666 100.4888485 2.00211787 0.080782 193 48 SH18549 18549 YMR230W_13_732413_733140_INTRON_53_462 intron 30.857579 218.953017 30.857579 189.095438 109.9765085 2.041299928 -0.159414 193 49 SH2621 2621 Pro3 tRNA-intron/exon 56 71 64.178072 248.437856 156.307964 2.193981106 -0.173887 193 50 SH20103 20103 YDL061C spliced 30.882571 170.955842 100.9192065 2.003973827 -0.04456 193 51 SH20788 20788 YKL081W spliced 30.85219 141.647568 86.249879 1.935758494 0.117077 193 52 SH19024 19024 YOR182C_15_678792_678190_INTRON_4_414 intron 30.805478 194.26746 30.805478 164.461982 97.63373 1.989599881 -0.009887 193 53 SH5434 5434 snR31 3' 30.755913 146.594407 88.67516 1.947801981 0.082783 193 54 SH7609 7609 snR189 snR189 116 133 28.778907 157.78407 93.2814885 1.969795468 -0.114688 193 55 SH18276 18276 YML056C_13_164176_162194_INTRON_461_868 intron 29.733747 168.402902 29.733747 139.669155 84.701451 1.92789085 0.050422 193 56 SH10985 10985 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1811 1828 12591.51925 4599.446927 8595.483087 3.93427029 1.410486 193 57 SH5645 5645 snR34 snR34 146 165 29.786505 156.6807 93.2336025 1.969572465 -0.037586 193 58 SH5034 5034 snR10 snR10 201 213 32.761613 175.618191 104.189902 2.01782563 0.037082 193 59 SH3244 3244 Thr1 3' flank 28.927255 171.375554 100.1514045 2.000657044 -0.170955 193 60 SH18601 18601 YNL069C_14_494998_493953_INTRON_29_477 intron 28.971762 193.320809 28.971762 165.349047 97.1604045 1.987489314 -0.138764 193 61 SH6653 6653 snR48 snR48 91 110 32.897246 158.631845 95.7645455 1.981204752 0.149596 193 62 SH4454 4454 telomerase RNA 3' 34.829159 192.235292 113.5322255 2.055119151 -0.049511 193 63 SH5274 5274 snR30 snR30 221 237 93.602609 214.583084 154.0928465 2.187782478 0.450756 193 64 SH20221 20221 YDR092W spliced 34.620514 186.318216 110.469365 2.043241858 0.003392 193 65 SH18682 18682 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.645354 167.632476 28.645354 139.987122 84.316238 1.925911221 -0.029889 193 66 SH15476 15476 YBL091C-A_2_46858_46559_INTRON_35_122 intron 30.383529 183.584777 30.383529 154.201248 92.2923885 1.965165886 0.016521 193 67 SH3690 3690 Val3 5' flank 26.368388 115.918728 71.143558 1.852135581 -0.046259 193 68 SH9931 9931 RUF5-1 RUF5-1 461 477 28.086502 128.835316 78.460909 1.894653335 -0.004468 193 69 SH8215 8215 snoRNA cluster 3; snR51 113.791227 357.470205 113.791227 244.678978 179.2351025 2.253423069 0.38075 193 70 SH11552 11552 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4646 4664 40.960932 169.010263 104.9855975 2.021129724 0.345646 193 71 SH20049 20049 YBR191W spliced 31.500979 180.929885 106.215432 2.02618762 -0.065108 193 72 SH17363 17363 YIL052C_9_257061_256224_INTRON_38_509 intron 29.631411 202.937159 29.631411 174.305748 101.9685795 2.008466369 -0.141588 193 73 SH17815 17815 YKR057W_11_551293_551878_INTRON_25_346 intron 28.75628 197.78737 28.75628 170.03109 99.393685 1.997358792 -0.176877 193 74 SH14702 14702 MT tRNA thr2 tRNA 37.349032 215.469967 37.349032 179.120935 108.2349835 2.034367655 0.153796 193 75 SH17193 17193 YHR021C_8_148660_147862_INTRON_4_553 intron 26.184706 145.326802 26.184706 120.142096 73.163401 1.864293885 -0.090476 193 76 SH20667 20667 YIL069C spliced 32.068711 203.15293 117.6108205 2.07044728 -0.234298 193 77 SH5218 5218 snR30 5' 31.348726 138.819401 85.0840635 1.929848223 0.166549 193 78 SH13529 13529 MT COX1 intronic 28.705809 170.96581 28.705809 143.260001 85.982905 1.934412114 -0.043459 193 79 SH10034 10034 RUF6 RUF6 16 33 27.009608 143.658293 85.3339505 1.931121852 -0.173898 193 80 SH6157 6157 snR39B 3' 29.224409 149.511128 89.3677685 1.951180914 -0.039179 193 81 SH12869 12869 MT COX1 COX1ai1 31.474037 202.910502 31.474037 172.436465 101.955251 2.008409598 -0.017858 193 82 SH16973 16973 YGR034W_7_555923_556666_INTRON_20_496 intron 78.089188 348.037736 78.089188 270.948548 174.518868 2.241842387 -0.17401 193 83 SH1627 1627 Leu5 tRNA 1 13 407.705759 692.205926 549.9558425 2.74032782 -0.007749 193 84 SH12698 12698 MT ORF 8 (hypothetical) ORF8 30.105623 186.753608 30.105623 157.647985 93.876804 1.972558296 -0.020456 193 85 SH19618 19618 RNA14 1.1 30.20807 138.854101 84.5310855 1.927016446 0.088315 193 86 SH4460 4460 telomerase RNA 3' 32.284006 189.972435 111.1282205 2.04582436 -0.113088 193 87 SH13226 13226 MT COX1 COX1-ai4 30.22109 185.311161 30.22109 156.090071 93.1555805 1.969208876 -0.004467 193 88 SH259 259 Arg3 3' flank 34.20803 175.317527 104.7627785 2.020207008 0.091728 193 89 SH16960 16960 YGR029W_7_543547_544199_INTRON_87_169 3' exon 32.052534 205.907305 32.052534 174.854771 103.4536525 2.014745828 0.00204 193 90 SH15135 15135 MT tRNA Phe 3' 27.880729 171.569582 27.880729 144.688853 86.284791 1.935934251 -0.112615 193 91 SH666 666 Gln2 3' flank 29.758387 157.917788 93.8380875 1.972379148 -0.045917 193 92 SH4421 4421 telomerase RNA telomerase 1141 1160 28.639775 138.928408 83.7840915 1.923161565 -0.024383 193 93 SH3757 3757 Val4 tRNA 11 26 116.373132 244.967999 180.6705655 2.256887404 0.40033 193 94 SH12102 12102 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7396 7411 466.607654 759.726431 613.1670425 2.787578804 0.006852 193 95 SH16073 16073 YDR025W_4_491510_492319_INTRON_46_384 5' exon 33.452712 213.172929 33.452712 180.720217 107.0864645 2.02973458 0.013764 193 96 SH20814 20814 YKL190W spliced 31.489855 163.805662 97.6477585 1.989662279 0.035252 193 97 SH16095 16095 YDR059C_4_569765_569229_INTRON_48_137 5' exon 33.55019 202.534894 33.55019 169.984704 101.767447 2.00760888 0.116108 193 98 SH5796 5796 snR35 snR35 166 188 27.652524 114.080814 70.866669 1.85044202 0.064581 193 99 SH7367 7367 snR68 snR68 56 75 27.760613 135.853806 81.8072095 1.912791579 -0.072432 193 100 SH15747 15747 YCR031C_3_178212_177492_INTRON_8_314 5' exon 66.463661 308.196167 66.463661 242.732506 154.5980835 2.189204106 -0.096814 193 101 SH8113 8113 snoRNA cluster 3; 5' 32.087382 148.273404 32.087382 117.186022 74.636702 1.872952441 0.347965 193 102 SH11235 11235 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3061 3077 18025.65715 23903.79396 20964.72555 4.321489181 -0.746896 193 103 SH21246 21246 YPL031C spliced 42.768251 178.413631 110.590941 2.043719553 0.257521 193 104 SH17073 17073 YGR225W_7_945138_946919_INTRON_1184_1276 exon/intron 32.606804 212.105156 32.606804 180.498352 106.552578 2.027563962 -0.014844 194 2 SH5264 5264 snR30 snR30 171 185 30.355692 160.656337 95.5060145 1.980030722 -0.018602 194 3 SH3428 3428 Trp1 5' flank 30.182367 157.38168 93.7820235 1.972119599 -0.013803 194 4 SH16270 16270 YDR447C_4_1355542_1354818_INTRON_4_317 intron 42.179989 259.038463 42.179989 217.858474 130.0192315 2.114007595 -0.205338 194 5 SH1749 1749 Leu7 tRNA 41 55 324.85507 515.283505 420.0692875 2.62332093 0.20586 194 6 SH12717 12717 MT ORF 8 (hypothetical) 3' 31.509405 188.441386 31.509405 157.931981 94.720693 1.976444867 0.072666 194 7 SH15393 15393 YBL040C_2_142830_142074_INTRON_23_119 intron/exon 33.218923 203.690497 33.218923 171.471574 102.3452485 2.010067685 0.08871 194 8 SH9263 9263 snR6 / U6 RNA 3' 29.020836 151.488606 90.254721 1.955469928 -0.06433 194 9 SH13326 13326 MT COX1 COX1-ai5a 28.783011 186.310611 28.783011 158.5276 93.6553055 1.971532385 -0.1182 194 10 SH11748 11748 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5626 5641 47.862476 178.389811 113.1261435 2.053562982 0.325365 194 11 SH14228 14228 MT ATP9 ATP9/3 30.268615 181.70712 30.268615 152.438505 91.35356 1.960725476 0.017971 194 12 SH19651 19651 SIR1 2.2 30.07211 154.991647 92.5318785 1.966291379 -0.009002 194 13 SH11696 11696 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5366 5382 22011.12577 21560.62681 21785.87629 4.338175033 -0.324031 194 14 SH13063 13063 MT COX1 intronic 58.012688 279.714155 58.012688 222.701467 140.3570775 2.147234317 -0.030564 194 15 SH19849 19849 Negative Control 35.211501 173.588379 104.39994 2.018700249 0.143089 194 16 SH1390 1390 Leu1 tRNA 21 35 33.206949 179.896037 106.551493 2.027559539 0.012644 194 17 SH13310 13310 MT COX1 COX1-ai5a 30.315163 181.19795 30.315163 151.882787 91.098975 1.959513491 0.024118 194 18 SH9231 9231 snR6 / U6 RNA U6 26 45 39.515599 167.437111 103.476355 2.014841122 0.340597 194 19 SH19812 19812 Negative Control 31.127231 179.319376 105.2233035 2.022111932 -0.078336 194 20 SH20774 20774 YKL006C-A spliced 32.963774 190.401601 111.6826875 2.047985856 -0.091934 194 21 SH15093 15093 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " intronic 33.907462 231.247231 33.907462 198.339769 116.1236155 2.064920549 -0.13657 194 22 SH16582 16582 YFL034C-A_6_64931_64242_INTRON_13_333 5' exon 36.738557 223.358254 36.738557 187.619697 112.179127 2.049912056 0.041178 194 23 SH18226 18226 YML026C_13_223828_222987_INTRON_48_448 intron 33.103278 203.865236 33.103278 171.761958 102.432618 2.010438273 0.080471 194 24 SH5304 5304 snR30 snR30 371 383 33.19742 176.323465 104.7604425 2.020197324 0.046149 194 25 SH14397 14397 MT 21S rRNA 21S rRNA3 31.436616 188.831838 31.436616 158.395222 94.915919 1.977339057 0.065493 194 26 SH16965 16965 YGR034W_7_555923_556666_INTRON_20_496 intron 21165.6481 43670.92302 21165.6481 22506.27492 21835.96151 4.33917232 -0.443018 194 27 SH5624 5624 snR34 snR34 41 60 31.642269 142.873954 87.2581115 1.940805809 0.16257 194 28 SH15509 15509 YBR048W_2_332790_333771_INTRON_46_556 intron 29.840207 176.414905 29.840207 147.574698 88.7074525 1.947960107 0.014656 194 29 SH20467 20467 YGL187C spliced 31.778115 190.081645 110.92988 2.045048543 -0.132978 194 30 SH7539 7539 snR79 snR79 36 52 33.682368 184.673867 109.1781175 2.038135602 -0.014559 194 31 SH11639 11639 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5081 5098 12047.44012 7889.463254 9968.451687 3.998627708 0.494562 194 32 SH2488 2488 Pro1 5' flank 96.99153 309.346686 203.169108 2.307857674 -0.223142 194 33 SH8192 8192 snoRNA cluster 3; intergenic 29.710762 176.011787 29.710762 147.301025 88.5058935 1.946972191 0.007138 194 34 SH20379 20379 YFL034C-A spliced 60.564509 231.771911 146.16821 2.164852929 -0.079314 194 35 SH12101 12101 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7391 7409 50.051159 197.890174 123.9706665 2.093318936 0.119685 194 36 SH10858 10858 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1176 1194 36.877801 185.588882 111.2333415 2.046234984 0.067557 194 37 SH11441 11441 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4091 4104 7522.03907 5301.584318 6411.811694 3.806980759 0.517686 194 38 SH18401 18401 YMR125W_13_517538_520445_INTRON_26_347 intron 31.326738 188.622917 31.326738 158.296179 94.8114585 1.976860827 0.058734 194 39 SH10402 10402 RUF8 5' 31.440286 166.025055 98.7326705 1.994460884 0.018633 194 40 SH8491 8491 snR19 / U1 RNA 5' 27.853019 133.086788 80.4699035 1.905633481 -0.048543 194 41 SH20620 20620 YHR097C spliced 28.975801 163.457698 96.2167495 1.983250681 -0.129155 194 42 SH14670 14670 MT 21S rRNA 21S rRNA4 28.222195 176.521612 28.222195 149.299417 88.760806 1.948221237 -0.111423 194 43 SH2376 2376 Phe4 5' flank 30.320486 155.91019 93.115338 1.969021224 0.003282 194 44 SH7553 7553 snR79 3' 28.569849 163.12638 95.8481145 1.981583574 -0.156793 194 45 SH21525 21525 copy of SH3560 36.446248 175.372828 105.909538 2.024935074 0.167118 194 46 SH14359 14359 MT ORF9 and ORF10 (hypothetical) ORF9 30.742421 212.024339 30.742421 182.281918 106.5121695 2.027399231 -0.118239 194 47 SH8893 8893 LSR1 / U2 RNA U2 1106 1122 36.652642 169.896454 103.274548 2.013993303 0.227417 194 48 SH11848 11848 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6126 6143 12095.15071 7476.143845 9785.64728 3.990589558 0.585316 194 49 SH18431 18431 YMR142C_13_551206_550205_INTRON_5_406 intron 34.743299 223.162325 34.743299 189.419026 112.0811625 2.049532627 -0.020219 194 50 SH742 742 Gln4 5' flank 32.768364 185.79127 109.279817 2.038539959 -0.057695 194 51 SH14214 14214 MT ATP9 ATP9 30.780361 191.170572 30.780361 161.390211 96.085286 1.982656887 0.006537 194 52 SH3536 3536 Tyr2 5' flank 32.674523 160.901772 96.7881475 1.985822178 0.122461 194 53 SH3434 3434 Trp1 tRNA 1 13 120.003998 300.84968 210.426839 2.323101131 0.042163 194 54 SH18969 18969 YOR096W_15_505793_506766_INTRON_145_545 intron 31.642845 204.512143 31.642845 173.869298 102.7560715 2.011807492 -0.016265 194 55 SH4891 4891 snR8 3' 36.502625 161.670214 99.0864195 1.996014135 0.306254 194 56 SH9600 9600 RUF3 RUF3 386 405 30.727286 190.546103 110.6366945 2.043899192 -0.177379 194 57 SH21193 21193 YOL120C spliced 40.534919 186.879964 113.7074415 2.055788888 0.119354 194 58 SH20258 20258 YDR397C spliced 30.882587 141.708424 86.2955055 1.935988177 0.118773 194 59 SH2914 2914 Pro8 tRNA 91 103 34.879482 158.334384 96.606933 1.985008295 0.26088 194 60 SH15791 15791 YDL029W_4_399336_400634_INTRON_23_145 3' exon 34.952224 193.785435 34.952224 159.833211 97.3927175 1.988526484 0.255203 194 61 SH3227 3227 Thr1 5' flank - tRNA9 9 32.040944 181.055955 106.5484495 2.027547134 -0.041021 194 62 SH14256 14256 MT VAR1 includes 5’ processing site 5' 29.082196 182.46166 29.082196 154.379464 91.73083 1.962515323 -0.07526 194 63 SH7716 7716 snoRNA cluster1 snR77 40.7608 229.030494 40.7608 189.269694 115.015247 2.060755416 0.093684 194 64 SH15924 15924 YDL108W_4_267697_268698_INTRON_29_109 5' exon 41.569502 248.181647 41.569502 207.612145 124.5908235 2.095486056 -0.105908 194 65 SH7644 7644 snoRNA cluster1 5' 30.664824 170.459794 30.664824 140.79497 85.729897 1.933132302 0.109104 194 66 SH6624 6624 snR48 5' 36.228808 186.805654 111.517231 2.047341977 0.040763 194 67 SH15817 15817 YDL061C_4_341182_340627_INTRON_1_408 3' exon 32.13728 179.801145 32.13728 148.663865 90.4005725 1.956171181 0.162604 194 68 SH18997 18997 YOR122C_15_552886_552297_INTRON_14_222 intron 33.801889 204.683274 33.801889 171.881385 102.841637 2.012168981 0.110822 194 69 SH11058 11058 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2176 2193 36729.73004 31869.50696 34299.6185 4.53528929 -0.280424 194 70 SH15995 15995 YDL136W_4_217600_218367_INTRON_4_408 3' exon 82.49739 344.469234 82.49739 262.971844 172.734617 2.237379381 -0.064597 194 71 SH17069 17069 YGR214W_7_920570_921783_INTRON_91_545 3' exon 31.47456 200.714154 31.47456 170.239594 100.857077 2.003706377 -0.004799 194 72 SH18629 18629 YNL096C_14_444312_443395_INTRON_145_489 intron 31.460498 217.103729 31.460498 186.643231 109.0518645 2.037633095 -0.114208 194 73 SH18350 18350 YML124C_13_23684_22049_INTRON_26_323 intron 27.767798 153.891476 27.767798 127.123678 77.445738 1.888997523 -0.016855 194 74 SH10520 10520 RUF8 RUF8 526 545 29.741464 172.786909 101.2641865 2.005455878 -0.125766 194 75 SH136 136 Arg1 56-68 56 68 62.121692 243.299811 152.7107515 2.183869614 -0.159096 194 76 SH9962 9962 RUF5-1 RUF5-1 616 635 31.976496 150.165358 91.070927 1.959379757 0.144054 194 77 SH11342 11342 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3596 3609 37971.01938 31356.54356 34663.78147 4.539875938 -0.211523 194 78 SH21042 21042 YMR133W spliced 36.334917 174.228424 105.2816705 2.022352767 0.174501 194 79 SH3492 3492 Tyr1 tRNA 1 13 58.153694 202.762622 130.458158 2.115471242 0.170742 194 80 SH1610 1610 Leu5 5' flank 29.120991 197.721808 113.4213995 2.054695002 -0.304078 194 81 SH8104 8104 snoRNA cluster 3; 5' 35.317658 223.306786 35.317658 188.989128 112.153393 2.049812417 -0.002566 194 82 SH11183 11183 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2801 2814 31.601759 149.626961 90.61436 1.957197027 0.1225 194 83 SH11858 11858 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6176 6194 22063.43147 14174.54092 18118.98619 4.258133894 0.345739 194 84 SH6329 6329 snR42 3' 31.959497 153.01838 92.4889385 1.966089795 0.127704 194 85 SH18415 18415 YMR133W_13_536206_537608_INTRON_1243_1358 5' exon 111.203935 425.205529 111.203935 315.001594 213.1027645 2.328589084 -0.12113 194 86 SH20874 20874 YLR185W spliced 91.209857 261.882629 176.546243 2.24685848 0.037578 194 87 SH3255 3255 Thr1 3' flank 40.10736 201.96435 121.035855 2.082914042 -0.064369 194 88 SH18524 18524 YMR225C_13_721402_720959_INTRON_59_205 intron 30.902214 188.271196 30.902214 158.368982 94.635598 1.976054531 0.030045 194 89 SH531 531 Cys1 5' flank 33.782674 153.802036 93.792355 1.972167441 0.23066 194 90 SH15441 15441 YBL072C_2_89435_88518_INTRON_1_308 3' exon 37.624214 225.64716 37.624214 189.022946 113.32358 2.054320286 0.041803 194 91 SH1584 1584 Leu4 tRNA 91 108 29.492997 155.72865 92.6108235 1.966661746 -0.0532 194 92 SH2797 2797 Pro6 tRNA 76 90 35.322872 160.209021 97.7659465 1.990187609 0.272536 194 93 SH10284 10284 RUF7 RUF7 31 45 35.224524 164.865744 100.045134 2.00019597 0.230529 194 94 SH2326 2326 Phe3 5' flank 164.065146 361.962864 263.014005 2.419978874 0.029306 194 95 SH17116 17116 YHR010W_8_126513_127484_INTRON_32_592 exon/intron 33.204556 205.800347 33.204556 173.595791 103.4001735 2.014521267 0.072715 194 96 SH2726 2726 Pro5 tRNA 11 28 55.088211 183.348482 119.2183465 2.076343094 0.352866 194 97 SH17196 17196 YHR021C_8_148660_147862_INTRON_4_553 intron 29.393575 170.119435 29.393575 141.72586 85.5597175 1.932269342 0.014796 194 98 SH15805 15805 YDL061C_4_341182_340627_INTRON_1_408 intron 29.517723 184.342975 29.517723 155.825252 92.6714875 1.966946134 -0.051963 194 99 SH16028 16028 YDL191W_4_117665_118518_INTRON_4_494 5' exon 41.709541 239.873154 41.709541 199.163613 120.436577 2.080758404 -0.008949 194 100 SH15526 15526 YBR048W_2_332790_333771_INTRON_46_556 intron 29.844869 187.075613 29.844869 158.230744 94.0378065 1.97330249 -0.041499 194 101 SH2678 2678 Pro4 tRNA-intron/exon 56 70 46.321542 215.454255 130.8878985 2.116899495 -0.12085 194 102 SH17963 17963 YLR185W_12_522665_523290_INTRON_8_366 intron 30.226659 197.629616 30.226659 168.402957 99.314808 1.997014007 -0.069405 194 103 SH2502 2502 Pro1 tRNA 1 13 927.278908 1456.580705 1191.929807 3.07625068 -0.176805 194 104 SH13677 13677 MT ORF 5 (hypothetical) 5' 30.606404 193.523226 30.606404 163.916822 97.261613 1.987941468 -0.018633 195 2 SH6777 6777 snR50 snR50 61 78 34.495728 179.648843 107.0722855 2.029677073 0.060578 195 3 SH3905 3905 RNase MRP 5' 33.259178 191.324268 112.291723 2.050347746 -0.089405 195 4 SH2878 2878 Pro8 5' flank 32.017175 169.205539 100.611357 2.002647007 0.033344 195 5 SH2455 2455 Phe5 tRNA-intron/exon 46 60 33.793255 180.763122 107.2781885 2.030511431 0.025497 195 6 SH20647 20647 YIL004C spliced 33.526252 171.610774 102.568513 2.011014059 0.103672 195 7 SH15366 15366 YBL027W_2_168385_169338_INTRON_3_386 intron 32.267035 172.346322 32.267035 141.079287 86.673161 1.937884636 0.213387 195 8 SH11052 11052 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2146 2162 24699.53307 29388.09986 27043.81647 4.43206798 -0.666651 195 9 SH3589 3589 Val1 5' flank 34.692808 166.692187 100.6924975 2.002997113 0.193717 195 10 SH13385 13385 MT COX1 Exon 5b 34.451596 186.189135 34.451596 152.737539 93.5945675 1.971250642 0.27437 195 11 SH1560 1560 Leu4 5' flank 32.313442 145.98687 89.150156 1.950122107 0.188669 195 12 SH16590 16590 YFL034C-A_6_64931_64242_INTRON_13_333 intron 28.314144 194.803903 28.314144 167.489759 97.9019515 1.990791349 -0.196834 195 13 SH21558 21558 copy of SH4784 33.869632 149.851465 91.8605485 1.963129034 0.261904 195 14 SH10905 10905 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1411 1430 13690.74412 8838.853571 11264.79884 4.051723441 0.47919 195 15 SH15129 15129 MT tRNA Phe tRNA 35.465857 231.799512 35.465857 197.333655 116.399756 2.06595207 -0.093703 195 16 SH12393 12393 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 52.288872 262.268799 52.288872 210.979927 131.6343995 2.119369397 0.008485 195 17 SH12913 12913 MT COX1 COX1ai2 35.237681 220.824076 35.237681 186.586395 110.912038 2.044978685 0.022132 195 18 SH7374 7374 snR68 snR68 91 108 33.288257 163.885914 98.5870855 1.993820028 0.138578 195 19 SH15840 15840 YDL075W_4_322225_322987_INTRON_58_478 intron 446.868783 1031.059983 446.868783 585.1912 516.0299915 2.712674943 0.38275 195 20 SH7726 7726 snoRNA cluster1 intergenic 27.622573 188.955088 27.622573 162.332515 94.977544 1.977620935 -0.222817 195 21 SH955 955 Gly1 tRNA 26 40 50.0135 198.706394 124.359947 2.094680528 0.109945 195 22 SH14179 14179 MT COB Exon6 32.298801 174.088663 32.298801 142.789862 87.5443315 1.942228031 0.205666 195 23 SH19546 19546 CBP1 2.2 29.5469 170.837641 100.1922705 2.000834218 -0.126509 195 24 SH12002 12002 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6896 6913 31.478033 180.451218 105.9646255 2.025160908 -0.063779 195 25 SH9420 9420 RUF2 5' 31.557186 143.286588 87.421887 1.941620176 0.154646 195 26 SH17687 17687 YKL006W_11_431544_432358_INTRON_130_527 intron 48.601723 248.256667 48.601723 200.654944 124.6283335 2.095616788 0.069793 195 27 SH1683 1683 Leu6 5' flank 35.494894 175.370166 105.43253 2.022974628 0.135459 195 28 SH14739 14739 MT tRNA cys; tRNA his 3' 31.788042 185.045859 31.788042 154.257817 93.0229295 1.968590012 0.110005 195 29 SH3809 3809 RNaseP RNaseP 11 28 29.935798 161.659502 95.79765 1.981354856 -0.052552 195 30 SH5152 5152 snR13 5' 1535.132519 2663.763763 2099.448141 3.322105151 -0.470461 195 31 SH6710 6710 snR49 snR49 76 93 30.848012 177.184434 104.016223 2.01710108 -0.083012 195 32 SH11267 11267 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3221 3239 42.102406 165.672829 103.8876175 2.016563787 0.408529 195 33 SH7048 7048 snR62 snR62 31 52 29.746012 141.138343 85.4421775 1.931672308 0.043136 195 34 SH2361 2361 Phe3 3' flank 29.651952 170.671528 100.16174 2.00070186 -0.118886 195 35 SH1976 1976 Lys2 3' flank 40.798561 200.763735 120.781148 2.081999153 -0.040489 195 36 SH8223 8223 snoRNA cluster 3; snR51 33.269334 205.210698 33.269334 172.941364 103.105349 2.013281197 0.081423 195 37 SH15844 15844 YDL075W_4_322225_322987_INTRON_58_478 intron 29.551989 179.930745 29.551989 151.378756 90.4653725 1.956482376 -0.026103 195 38 SH14034 14034 MT COB Cytbi4 35.242662 206.120558 35.242662 171.877896 103.560279 2.015193212 0.160858 195 39 SH16799 16799 YGL137W_7_249872_252741_INTRON_19_218 intron 29.754445 190.32011 29.754445 161.565665 95.660055 1.980730626 -0.064692 195 40 SH1730 1730 Leu7 5' flank 62.181657 229.575509 145.878583 2.163991536 -0.038118 195 41 SH9761 9761 RUF4 RUF4 581 598 32.020422 175.169401 103.5949115 2.015338424 -0.00166 195 42 SH20488 20488 YGL232W spliced 28.399669 164.143419 96.271544 1.983497937 -0.174226 195 43 SH8632 8632 snR19 / U1 RNA 656-668 + 3' 656 28.566806 150.963241 89.7650235 1.953107149 -0.094498 195 44 SH11514 11514 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4456 4469 44.210558 206.208835 125.2096965 2.097637963 -0.051812 195 45 SH7206 7206 snR64 96-101 + 3' 96 44.36875 177.08676 110.727755 2.044256495 0.296629 195 46 SH3351 3351 Thr3 3' flank 30.818215 156.783372 93.8007935 1.972206512 0.032548 195 47 SH15449 15449 YBL087C_2_60732_59815_INTRON_43_546 intron 30.849268 228.318829 30.849268 198.469561 114.6594145 2.05940972 -0.241383 195 48 SH12595 12595 MT_15S MT_15S 33.770307 189.753782 33.770307 156.983475 95.376891 1.979443162 0.209174 195 49 SH7891 7891 snoRNA cluster1 intergenic 28.872348 182.134677 28.872348 154.262329 91.5673385 1.961740591 -0.089674 195 50 SH10328 10328 RUF7 RUF7 251 268 30.77003 166.450698 98.610364 1.993922562 -0.024251 195 51 SH16570 16570 YER133W_5_432491_433954_INTRON_178_702 intron/exon 26.837414 152.000599 26.837414 126.163185 76.5002995 1.883663135 -0.08066 195 52 SH19697 19697 Negative Control 32.598939 159.355821 95.97738 1.98216889 0.127941 195 53 SH9546 9546 RUF3 RUF3 116 133 47.107114 198.989547 123.0483305 2.090075726 0.068696 195 54 SH9187 9187 snR7 U5 RNA 206-215 + 3' 206 225.095221 452.989913 339.042567 2.530254228 -0.011438 195 55 SH957 957 Gly1 tRNA 36 48 46.176772 188.914147 117.5454595 2.070205858 0.172924 195 56 SH1638 1638 Leu5 tRNA-intron/exon 56 73 31.69421 174.924528 103.309369 2.014139709 -0.019381 195 57 SH14890 14890 MT tRNA Ile 5' 28.876404 187.861743 28.876404 159.985339 94.4308715 1.975113998 -0.118892 195 58 SH18163 18163 YLR448W_12_1028848_1029762_INTRON_16_399 exon/intron 30.934701 204.532331 30.934701 174.59763 102.7661655 2.011850152 -0.062823 195 59 SH13578 13578 MT COX1 Exon 6 31.042883 179.640708 31.042883 149.597825 90.320354 1.955785631 0.085627 195 60 SH14299 14299 MT VAR1 includes 5’ processing site VAR1 29.162183 200.76741 29.162183 172.605227 100.883705 2.003821024 -0.161467 195 61 SH16830 16830 YGL178W_7_167356_170575_INTRON_4_643 intron 29.202194 176.114527 29.202194 147.912333 88.5572635 1.947224188 -0.032257 195 62 SH2352 2352 Phe3 86-91 + 3' flank 86 27.225871 112.726013 69.975942 1.844948754 0.042678 195 63 SH15897 15897 YDL083C_4_307788_306925_INTRON_25_456 5' exon 33.048687 209.641887 33.048687 177.5932 105.3209435 2.022514741 0.028662 195 64 SH12285 12285 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.906412 202.425733 32.906412 170.519321 101.7128665 2.007375894 0.076698 195 65 SH6178 6178 snR40 5' 33.679421 176.141664 104.9105425 2.020819133 0.065158 195 66 SH4911 4911 snR9 5' 147.105111 265.524403 206.314757 2.314530293 0.482499 195 67 SH45 45 Ala1 3' flank 34.123224 162.918293 98.5207585 1.993527747 0.190906 195 68 SH19291 19291 YPL175W_16_218629_220087_INTRON_18_117 intron 31.956029 191.152669 31.956029 160.19664 96.0763345 1.982616426 0.085358 195 69 SH19207 19207 YPL081W_16_404945_406039_INTRON_8_508 intron 41.179693 190.74973 41.179693 150.570037 95.874865 1.981704765 0.570707 195 70 SH12091 12091 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7341 7354 2282.537283 1327.918274 1805.227779 3.256532008 1.143298 195 71 SH13743 13743 MT COB Exon1 27.724331 172.572152 27.724331 145.847821 86.786076 1.938450052 -0.130679 195 72 SH6304 6304 snR42 snR42 301 316 31.427005 153.541962 92.4844835 1.966068875 0.090068 195 73 SH8720 8720 LSR1 / U2 RNA U2 241 259 29.588773 132.649127 81.11895 1.909122321 0.080316 195 74 SH21350 21350 YPR132W spliced 29.673943 172.734112 101.2040275 2.005197796 -0.129705 195 75 SH21931 21931 copy of SH21371 160.411876 382.726583 271.5692295 2.43388056 -0.095358 195 76 SH7516 7516 snR79 5' 32.824891 192.736622 112.7807565 2.052235003 -0.117561 195 77 SH5590 5590 snR33 3' 28.28717 123.486231 75.8867005 1.88016567 0.045317 195 78 SH21161 21161 YNL301C spliced 30.434183 164.174321 97.304252 1.988131818 -0.030791 195 79 SH8644 8644 snR19 / U1 RNA 3' 24.884654 144.048888 84.466771 1.926685892 -0.345903 195 80 SH8286 8286 snoRNA cluster4 intergenic 27.055425 170.816595 27.055425 144.76117 85.9082975 1.934035112 -0.176288 195 81 SH11426 11426 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4016 4029 499.007926 653.03861 576.023268 2.760440027 0.33867 195 82 SH14232 14232 MT ATP9 3' 29.473368 206.136067 29.473368 177.662699 103.5680335 2.01522573 -0.170967 195 83 SH9925 9925 RUF5-1 RUF5-1 431 452 30.649312 157.43157 94.040441 1.973314657 0.017801 195 84 SH8571 8571 snR19 / U1 RNA U1 351 367 33.78526 140.590047 87.1876535 1.94045499 0.31162 195 85 SH7821 7821 snoRNA cluster1 intergenic 33.849194 181.58897 33.849194 148.739776 91.294485 1.960444543 0.268341 195 86 SH13314 13314 MT COX1 COX1-ai5a 27.810742 180.497824 27.810742 153.687082 90.748912 1.957841427 -0.164926 195 87 SH10464 10464 RUF8 RUF8 246 267 27.749723 135.588606 81.6691645 1.912058113 -0.071619 195 88 SH6876 6876 snR56 snR56 11 32 118.729779 353.034776 235.8822775 2.372695312 -0.266772 195 89 SH14437 14437 MT 21S rRNA 21S rRNA3 57.451236 292.763059 57.451236 236.311823 146.8815295 2.166967186 -0.162498 195 90 SH9140 9140 snR7 U5 RNA 5' 30.353724 138.479919 84.4168215 1.926428996 0.100548 195 91 SH4817 4817 snR5 3' 35.144858 178.22716 106.686009 2.028107469 0.096318 195 92 SH17260 17260 YHR101C_8_315970_314876_INTRON_111_197 intron 29.121299 174.346936 29.121299 146.225637 87.673468 1.942868186 -0.029162 195 93 SH8696 8696 LSR1 / U2 RNA U2 121 140 44.750286 207.369426 126.059856 2.100576807 -0.056729 195 94 SH6741 6741 snR49 3' 27.068273 128.213813 77.641043 1.890091361 -0.076406 195 95 SH20105 20105 YDL061C spliced 32.965532 169.978533 101.4720325 2.006346359 0.083281 195 96 SH8946 8946 snR17a / U3a U3a 16 34 31.083812 170.435364 100.759588 2.003286383 -0.02932 195 97 SH10078 10078 RUF6 RUF6 236 252 29.239379 160.632304 94.9358415 1.977430204 -0.096238 195 98 SH3579 3579 Tyr2 3' flank 28.407669 162.983148 95.6954085 1.980891101 -0.167895 195 99 SH13237 13237 MT COX1 COX1-ai4 27.594547 177.472506 27.594547 150.877959 89.236253 1.950541326 -0.166986 195 100 SH11157 11157 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2671 2684 1214.805792 1393.5546 1304.180196 3.115337601 0.243151 195 101 SH14973 14973 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.002313 194.679695 28.002313 167.677382 97.8398475 1.990515767 -0.220724 195 102 SH21877 21877 copy of SH18252 28.214361 136.965265 82.589813 1.916926483 -0.044811 195 103 SH14483 14483 MT 21S rRNA 21S rRNA3 32.554488 219.632309 32.554488 188.077821 110.3161545 2.042639114 -0.08618 195 104 SH14651 14651 MT 21S rRNA 21S rRNA4 32.789541 224.735038 32.789541 192.945497 112.867519 2.052568979 -0.120679 196 2 SH13849 13849 MT COB Cytbi2 30.368611 183.009134 30.368611 153.640523 92.004567 1.963809386 0.018453 196 3 SH2788 2788 Pro6 tRNA-exon/intron 31 45 40.44552 159.305359 99.8754395 1.999458703 0.453994 196 4 SH8347 8347 snoRNA cluster4 snR53 28.978987 185.492607 28.978987 157.51362 93.2463035 1.969631624 -0.09892 196 5 SH1771 1771 Leu7 3' flank 31.791559 188.817942 110.3047505 2.042594217 -0.121216 196 6 SH1135 1135 Gly4 3' flank 114.463099 279.372981 196.91804 2.294285504 0.134228 196 7 SH21763 21763 copy of SH13395 29.337281 140.132769 84.735025 1.928062962 0.019568 196 8 SH7865 7865 snoRNA cluster1 intergenic/snR73 29.125839 181.464199 29.125839 153.33836 91.2320995 1.960147669 -0.066667 196 9 SH4214 4214 telomerase RNA telomerase 106 123 32.832266 158.318359 95.5753125 1.980345727 0.14791 196 10 SH8421 8421 snoRNA cluster 5 snR190 36.514865 243.452866 36.514865 207.938001 122.226433 2.087165138 -0.187299 196 11 SH3405 3405 Thr4 3' flank 34.387159 163.631151 99.009155 1.995675354 0.200874 196 12 SH169 169 Arg2 5' flank 34.224734 188.321661 111.2731975 2.046390568 -0.02843 196 13 SH5064 5064 snR11 5' 36.952907 171.185151 104.069029 2.017321502 0.22444 196 14 SH16351 16351 YDR500C_4_1450856_1450201_INTRON_8_396 intron 32.050838 201.725255 32.050838 170.674417 101.3626275 2.00587786 0.026527 196 15 SH5568 5568 snR33 snR33 126 142 30.047318 143.522427 86.7848725 1.93844403 0.051308 196 16 SH16895 16895 YGL226C-A_7_73156_72747_INTRON_22_170 intron 29.959583 176.844954 29.959583 147.885371 88.922477 1.949011552 0.021239 196 17 SH19666 19666 SIR1 2.4 32.71524 154.954078 93.834659 1.97236328 0.163058 196 18 SH4938 4938 snR9 snR9 96 113 33.588856 151.134425 92.3616405 1.965491638 0.237681 196 19 SH18901 18901 YOL120C_15_94401_93394_INTRON_113_559 intron 31.653033 177.124532 31.653033 146.471499 89.062266 1.949693741 0.143131 196 20 SH15548 15548 YBR078W_2_393082_394818_INTRON_59_388 intron 31.618487 216.449076 31.618487 185.830589 108.724538 2.036327571 -0.100844 196 21 SH15238 15238 MT tRNA fMet 5' 31.602428 208.87026 31.602428 178.267832 104.93513 2.020920905 -0.044038 196 22 SH16653 16653 YFR031C-A_6_221405_220494_INTRON_5_151 intron/exon 37.244285 220.230896 37.244285 183.986611 110.615448 2.043815783 0.093438 196 23 SH20547 20547 YGR225W spliced 57.080714 213.710533 135.3956235 2.131604627 0.044782 196 24 SH7234 7234 snR65 5' 48.644428 194.735438 121.689933 2.085254652 0.137725 196 25 SH9764 9764 RUF4 RUF4 596 617 27.957711 178.025213 102.991462 2.012801223 -0.272543 196 26 SH10453 10453 RUF8 RUF8 191 210 31.786489 187.996477 109.891483 2.040964034 -0.114049 196 27 SH18537 18537 YMR230W_13_732413_733140_INTRON_53_462 intron 33.737467 210.078099 33.737467 177.340632 105.5390495 2.023413179 0.055773 196 28 SH16460 16460 YER093C-A_5_348396_347908_INTRON_125_199 5' exon 35.681488 218.781592 35.681488 184.100104 109.890796 2.040961319 0.059762 196 29 SH12648 12648 MT_15S MT_15S 31.911364 200.516037 31.911364 169.604673 100.7580185 2.003279618 0.024762 196 30 SH14254 14254 MT VAR1 includes 5’ processing site 5' 35.69563 224.255713 35.69563 189.560083 112.6278565 2.051645819 -0.001605 196 31 SH6920 6920 snR58 5' 43.237735 171.320048 107.2788915 2.030514277 0.354354 196 32 SH3247 3247 Thr1 3' flank 29.903677 189.680811 109.792244 2.040571662 -0.210375 196 33 SH18645 18645 YNL112W_14_413636_416278_INTRON_1274_2275 intron 26.062016 156.1126 26.062016 131.050584 78.5563 1.89518102 -0.172455 196 34 SH16673 16673 YFR032C-A_6_223758_223245_INTRON_1_331 intron 31.63047 199.649107 31.63047 169.018637 100.3245535 2.001407236 0.011751 196 35 SH15115 15115 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " orf 3 / 3' 25.953958 147.539893 25.953958 122.585935 74.2699465 1.870813111 -0.125441 196 36 SH13476 13476 MT COX1 intronic 27.82017 180.244942 27.82017 153.424772 90.622471 1.9572359 -0.162881 196 37 SH6128 6128 snR39B 5' 39.14202 200.187306 119.664663 2.077965922 -0.058794 196 38 SH5974 5974 snR36 snR36 326 343 31.725256 170.616588 101.170922 2.005055708 0.007784 196 39 SH5938 5938 snR36 snR36 146 162 29.988478 154.324387 92.1564325 1.964525654 -0.011286 196 40 SH4052 4052 SRP RNA SRP RNA 151 167 32.073435 164.824781 98.449108 1.993211786 0.063277 196 41 SH97 97 Ala2 3' flank 30.358846 159.058727 94.7087865 1.976390272 -0.010291 196 42 SH2451 2451 Phe5 tRNA-exon/intron 26 42 38.263992 196.416029 117.3400105 2.069446123 -0.029826 196 43 SH3344 3344 Thr3 66-72 + 3' flank 66 28.757894 155.180601 91.9692475 1.963642633 -0.102725 196 44 SH20803 20803 YKL180W spliced 28.867352 168.411183 98.6392675 1.994049839 -0.161122 196 45 SH5067 5067 snR11 5' 28.936189 164.858639 96.897414 1.986312187 -0.138908 196 46 SH15992 15992 YDL136W_4_217600_218367_INTRON_4_408 intron 30.916845 196.617978 30.916845 166.701133 98.808989 1.994796456 -0.016881 196 47 SH10110 10110 RUF6 RUF6 396 413 30.909593 161.346455 96.128024 1.982850015 0.015452 196 48 SH15408 15408 YBL059C-A_2_110500_110086_INTRON_35_119 intron 34.773262 185.957749 34.773262 152.184487 93.4788745 1.970713475 0.295428 196 49 SH3300 3300 Thr2 3' flank 28.866082 141.523762 85.194922 1.93041371 -0.02223 196 50 SH17354 17354 YIL018W_9_316766_317930_INTRON_5_404 3' exon 36.568331 189.364238 36.568331 153.795907 95.182119 1.978555369 0.37882 196 51 SH10240 10240 RUF6 1046-1051 + 3' 1046 31.635183 161.555497 96.59534 1.984956175 0.057912 196 52 SH20396 20396 YFR024C-A spliced 34.475831 188.274205 111.375018 2.046787787 -0.019248 196 53 SH9059 9059 snR14 / U4 RNA 5' 30.574665 174.233975 102.40432 2.010318278 -0.08259 196 54 SH15768 15768 YCR097W_3_293828_294314_INTRON_106_159 exon/intron 30.579597 175.80601 30.579597 146.226413 88.403005 1.946467028 0.072887 196 55 SH137 137 Arg1 61-73 61 73 13831.80976 10815.97346 12323.89161 4.09074787 0.171242 196 56 SH6718 6718 snR49 snR49 116 135 30.717954 161.793376 96.255665 1.983426299 0.000304 196 57 SH19588 19588 AEP2/ATP13 2.1 32.787769 177.2089 104.9983345 2.02118241 0.022822 196 58 SH14315 14315 MT VAR1 includes 5’ processing site VAR1 29.020497 177.943497 29.020497 149.923 89.4717485 1.951685925 -0.055939 196 59 SH3278 3278 Thr2 5' flank - tRNA8 8 40.942263 160.978694 100.9604785 2.0041514 0.450984 196 60 SH21021 21021 YMR079W spliced 33.180857 196.596912 114.8888845 2.060278013 -0.138104 196 61 SH19639 19639 RNA14 2.2 31.266672 181.781711 106.5241915 2.027448247 -0.083837 196 62 SH13394 13394 MT COX1 intronic 29.290721 208.01953 29.290721 179.728809 104.509765 2.019156871 -0.194335 196 63 SH3464 3464 Trp1 3' flank 31.194773 196.707685 113.951229 2.056719014 -0.212994 196 64 SH8741 8741 LSR1 / U2 RNA U2 346 362 30.078545 141.981721 86.030133 1.934650594 0.061907 196 65 SH19052 19052 YOR234C_15_779404_778554_INTRON_20_546 intron 32.814393 184.348398 32.814393 152.534005 92.674199 1.966958841 0.184708 196 66 SH10256 10256 RUF6 3' 34.498847 158.747889 96.623368 1.985082172 0.237718 196 67 SH9691 9691 RUF4 RUF4 231 250 32.289773 157.038511 94.664142 1.976185503 0.12501 196 68 SH7951 7951 snoRNA cluster1 3' 33.924168 221.6809 33.924168 188.756732 111.34045 2.046652972 -0.04289 196 69 SH9709 9709 RUF4 RUF4 321 337 33.670254 171.17308 102.421667 2.01039184 0.113116 196 70 SH298 298 Arg4 3' flank 40.051312 157.595303 98.8233075 1.994859385 0.460473 196 71 SH10265 10265 RUF7 5' 224.099814 346.456139 285.2779765 2.455268245 0.451844 196 72 SH12218 12218 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 72.680078 320.705401 72.680078 249.025323 160.8527005 2.206428357 -0.071245 196 73 SH2360 2360 Phe3 3' flank 33.282578 186.313609 109.7980935 2.040594799 -0.04378 196 74 SH4397 4397 telomerase RNA telomerase 1021 1040 31.483813 177.392429 104.438121 2.01885905 -0.046066 196 75 SH8460 8460 snoRNA cluster 5 snR128 39.131828 225.091525 39.131828 186.959697 113.0457625 2.053254288 0.093502 196 76 SH10393 10393 RUF7 3' 39.344112 190.250823 114.7974675 2.059932307 0.059325 196 77 SH936 936 Gly1 5' flank 28.189905 143.187544 85.6887245 1.932923678 -0.08126 196 78 SH11814 11814 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5956 5973 624.164107 860.542005 742.353056 2.870610501 0.168087 196 79 SH2231 2231 Phe1 tRNA-exon/intron 31 49 28.64623 183.532925 106.0895775 2.02567272 -0.257207 196 80 SH6149 6149 snR39B 86-96 + 3' 86 36.689626 161.780929 99.2352775 1.996666088 0.31122 196 81 SH4645 4645 snR3 snR3 141 158 27.166604 152.66721 89.916907 1.953841359 -0.209091 196 82 SH7570 7570 snR189 5' 28.348466 142.316345 85.3324055 1.931113988 -0.064691 196 83 SH12963 12963 MT COX1 COX1ai2 33.476702 226.716816 33.476702 194.240114 113.858408 2.056365107 -0.107119 196 84 SH13165 13165 MT COX1 intronic 31.597097 184.25045 31.597097 153.653353 92.625225 1.966729276 0.100683 196 85 SH6667 6667 snR48 3' 33.636259 182.944104 108.2901815 2.034589082 -0.00032 196 86 SH11016 11016 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1966 1984 520.881032 953.197126 737.039079 2.867490515 -0.225786 196 87 SH2560 2560 Pro2 tRNA-exon/intron 36 52 31.522403 177.685277 104.60384 2.019547628 -0.045452 196 88 SH4663 4663 snR3 3' 31.392986 168.139957 99.7664715 1.998984613 0.002958 196 89 SH8542 8542 snR19 / U1 RNA U1 206 223 31.240096 167.003453 99.1217745 1.996169068 0.000722 196 90 SH11294 11294 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3356 3369 50.774068 201.033943 125.9040055 2.100039547 0.094407 196 91 SH1667 1667 Leu6 5' flank 34.854592 169.464627 102.1596095 2.009279224 0.171455 196 92 SH16607 16607 YFL034C-B_6_63992_63015_INTRON_21_134 intron 36.68215 202.422323 36.68215 166.740173 101.7111615 2.007368614 0.260025 196 93 SH10098 10098 RUF6 RUF6 336 353 32.711985 155.26661 93.9892975 1.973078404 0.160824 196 94 SH8622 8622 snR19 / U1 RNA U1 606 624 42.435491 209.986502 126.2109965 2.101097196 -0.118698 196 95 SH227 227 Arg3 5' flank - tRNA10 5' flank 10 32.747686 163.092798 97.920242 1.990872478 0.112901 196 96 SH4071 4071 SRP RNA SRP RNA 246 262 131.463627 292.678708 212.0711675 2.326481627 0.186271 196 97 SH11180 11180 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2786 2799 29.101893 166.005921 97.553907 1.989244667 -0.132676 196 98 SH1692 1692 Leu6 tRNA 26 38 546.706605 1009.867134 778.2868695 2.891139704 -0.258985 196 99 SH2365 2365 Phe3 3' flank 76.634971 224.52958 150.5822755 2.177773856 0.183108 196 100 SH10222 10222 RUF6 RUF6 956 970 358.806746 546.659457 452.7331015 2.655842249 0.227351 196 101 SH14255 14255 MT VAR1 includes 5’ processing site 5' 28.007953 189.895185 28.007953 162.887232 95.4475925 1.979764979 -0.196827 196 102 SH4458 4458 telomerase RNA 3' 28.250336 145.406834 86.828585 1.938662724 -0.088736 196 103 SH12514 12514 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.483359 162.770802 28.483359 135.287443 81.885401 1.91320648 -0.015221 196 104 SH14684 14684 MT 21S rRNA 21S rRNA4 28.69973 194.537456 28.69973 166.837726 97.768728 1.990199965 -0.165603 197 2 SH5832 5832 snR35 snR35 346 363 30.373227 161.290032 95.8316295 1.981508873 -0.020593 197 3 SH7930 7930 snoRNA cluster1 snR72 30.196682 195.972055 30.196682 166.775373 98.4860275 1.99337462 -0.061393 197 4 SH12334 12334 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.002691 225.003393 30.002691 196.000702 113.0016965 2.053084964 -0.253594 197 5 SH2637 2637 Pro3 3' flank 29.797428 180.227784 105.012606 2.021241436 -0.165089 197 6 SH5622 5622 snR34 snR34 31 46 35.584791 170.243493 102.914142 2.012475058 0.188555 197 7 SH12381 12381 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.366767 201.137961 31.366767 170.771194 101.0689805 2.004617885 -0.01438 197 8 SH12257 12257 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 421.016248 954.432256 421.016248 534.416008 477.716128 2.679169904 0.460063 197 9 SH4123 4123 SRP RNA SRP RNA 506 518 2585.836382 3143.496322 2864.666352 3.457074047 -0.042218 197 10 SH935 935 Gly1 5' flank 28.870365 134.00972 81.4400425 1.910837992 0.020597 197 11 SH4949 4949 snR9 snR9 151 163 34.555155 196.916266 115.7357105 2.063467382 -0.107496 197 12 SH16787 16787 YGL103W_7_310965_311925_INTRON_50_560 intron 30.560632 204.704214 30.560632 175.143582 102.852107 2.012213193 -0.088738 197 13 SH5806 5806 snR35 snR35 216 233 40.08988 199.89725 119.993565 2.079157956 -0.041121 197 14 SH20673 20673 YIL106W spliced 32.289431 145.566357 88.927894 1.949038007 0.189463 197 15 SH3723 3723 Val3 3' flank 30.292808 148.255833 89.2743205 1.950726553 0.042167 197 16 SH4440 4440 telomerase RNA telomerase 1236 1253 26.409138 147.856102 87.13262 1.940180773 -0.243693 197 17 SH13992 13992 MT COB intronic 24.454152 142.998468 24.454152 119.544316 71.999234 1.857327876 -0.226499 197 18 SH9421 9421 RUF2 5' 33.910481 141.277088 87.5937845 1.94247329 0.315349 197 19 SH16805 16805 YGL137W_7_249872_252741_INTRON_19_218 intron 31.959933 188.826549 31.959933 157.866616 94.9132745 1.977326957 0.100473 197 20 SH1369 1369 Leu1 5' flank 33.819611 180.308673 107.064142 2.029644041 0.030678 197 21 SH6524 6524 snR46 snR46 111 128 28.109277 155.947214 92.0282455 1.963921142 -0.154061 197 22 SH4332 4332 telomerase RNA telomerase 696 712 175.461122 378.638965 277.0500435 2.442558223 0.022291 197 23 SH12133 12133 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7551 7564 35.682521 168.743302 102.2129115 2.009505759 0.206776 197 24 SH8554 8554 snR19 / U1 RNA U1 266 282 30.0148 137.698971 83.8568855 1.923538728 0.081307 197 25 SH500 500 Asp2 61-72 + 3' flank 61 73 42.393923 180.491278 111.4426005 2.047051238 0.225787 197 26 SH16733 16733 YGL076C_7_365994_364333_INTRON_565_1032 intron 30.078465 171.465593 30.078465 142.387128 86.2327965 1.93567247 0.059679 197 27 SH18311 18311 YML073C_13_124172_123227_INTRON_16_430 intron 26.311918 201.06937 26.311918 175.757452 101.034685 2.004470492 -0.388068 197 28 SH12449 12449 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.845114 194.216139 35.845114 159.371025 97.6080695 1.989485723 0.3053 197 29 SH7151 7151 snR63 3' 33.944721 142.506619 88.22567 1.945594965 0.310424 197 30 SH9958 9958 RUF5-1 RUF5-1 596 610 39.638675 208.68472 124.1616975 2.093987641 -0.146227 197 31 SH5522 5522 snR32 3' 30.07614 145.784624 87.930382 1.94413896 0.040887 197 32 SH5203 5203 snR13 3' 30.016754 181.748294 105.882524 2.024824285 -0.159916 197 33 SH21242 21242 YOR312C spliced 31.844166 176.255476 104.049821 2.017241337 -0.018258 197 34 SH1782 1782 Leu8 5' flank 31.788922 171.352231 101.5705765 2.006767917 0.007161 197 35 SH11980 11980 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6786 6803 65.880704 208.560227 137.2204655 2.137418888 0.20773 197 36 SH10374 10374 RUF7 RUF7 481 495 29.901159 168.749491 99.325325 1.997059995 -0.091734 197 37 SH18705 18705 YNL130C_14_381156_379555_INTRON_30_470 intron 28.083518 200.038012 28.083518 172.954494 100.519006 2.002248185 -0.239816 197 38 SH2722 2722 Pro5 5' flank - tRNA5 5 45.336551 212.133409 128.73498 2.10969657 -0.099561 197 39 SH14024 14024 MT COB Exon4 28.352068 194.805369 28.352068 167.453301 97.9026845 1.9907946 -0.19388 197 40 SH7214 7214 snR64 3' 27.56357 148.631825 88.0976975 1.944964558 -0.157663 197 41 SH20257 20257 YDR381W spliced 28.695872 156.157092 92.426482 1.965796423 -0.112288 197 42 SH14572 14572 MT 21S rRNA 21S rRNA3 31.765418 199.635688 31.765418 168.87027 100.317844 2.00137819 0.020602 197 43 SH12025 12025 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7011 7031 28.969099 144.666391 86.817745 1.938608501 -0.031843 197 44 SH17619 17619 YJR021C_10_469271_468247_INTRON_317_396 3' exon 31.004752 209.004195 31.004752 178.999443 105.0020975 2.021197975 -0.083892 197 45 SH12359 12359 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.081556 194.37716 29.081556 166.295604 97.68858 1.989843797 -0.135539 197 46 SH10720 10720 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 486 504 31.0343 191.657613 111.3459565 2.04667445 -0.175284 197 47 SH2802 2802 Pro6 101-102 + 3' flank 101 27.078755 118.932251 73.005503 1.863355598 -0.013188 197 48 SH21476 21476 copy of SH1443 32.873182 197.976441 115.4248115 2.062299174 -0.161063 197 49 SH12169 12169 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7731 7749 26.939769 119.202698 73.0712335 1.863746439 -0.025636 197 50 SH1519 1519 Leu3 tRNA-intron/exon 66 82 38.512671 190.834895 114.673783 2.05946414 0.037538 197 51 SH11722 11722 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5496 5513 44.229204 155.622181 99.9256925 1.999677167 0.579696 197 52 SH7485 7485 snR71 snR71 41 62 28.652695 159.084161 93.868428 1.972519545 -0.130457 197 53 SH20472 20472 YGL187C spliced 50.868929 204.601383 127.735156 2.106310443 0.05703 197 54 SH2711 2711 Pro5 5' flank 42.161743 179.57207 110.8669065 2.04480193 0.23407 197 55 SH2780 2780 Pro6 5' flank - tRNA7 7 81.196378 277.828414 179.512396 2.254094444 -0.186981 197 56 SH10239 10239 RUF6 1041-1051 + 3' 1041 30.722157 177.881149 104.301653 2.018291191 -0.094641 197 57 SH4604 4604 snR3 5' 30.859787 147.461907 89.160847 1.950174185 0.085 197 58 SH1311 1311 Ile3 5' flank 31.0132 151.189851 91.1015255 1.959525649 0.075067 197 59 SH15774 15774 YDL012C_4_431513_431104_INTRON_46_131 5' exon 33.128685 211.024045 33.128685 178.89536 106.0120225 2.02535512 0.01923 197 60 SH10924 10924 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1506 1524 2349.495874 1199.256038 1774.375956 3.249045644 1.341546 197 61 SH14793 14793 "MT tRNAs (Lys, Arg1, Gly)" 5' 29.369396 207.470519 29.369396 179.101123 104.2352595 2.018014652 -0.185766 197 62 SH19610 19610 RNA14 1.1 31.354581 183.902169 107.628375 2.031926783 -0.093282 197 63 SH5144 5144 snR11 3' 33.266401 170.721165 101.993783 2.0085737 0.095836 197 64 SH1931 1931 Lys1 3' flank 29.188796 146.592523 87.8906595 1.943942723 -0.026239 197 65 SH6256 6256 snR42 snR42 61 81 29.004413 125.851507 77.42796 1.888897817 0.081091 197 66 SH11263 11263 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S/ITS2 3201 3217 32.65598 154.479779 93.5678795 1.971126787 0.162783 197 67 SH11003 11003 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1901 1919 5574.901454 2970.62379 4272.762622 3.630708766 1.049704 197 68 SH20138 20138 YDL108W spliced 32.092019 200.553858 116.3229385 2.065665365 -0.2117 197 69 SH11049 11049 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2131 2148 66.990832 194.709534 130.850183 2.116774334 0.364274 197 70 SH1611 1611 Leu5 5' flank 34.451316 190.298694 112.375005 2.050669724 -0.038148 197 71 SH320 320 Arg5 5' flank 35.228316 180.083963 107.6561395 2.032038802 0.08167 197 72 SH10521 10521 RUF8 RUF8 531 551 29.537201 182.332461 105.934831 2.025038778 -0.193283 197 73 SH9938 9938 RUF5-1 RUF5-1 496 512 27.659201 157.593636 92.6264185 1.966734872 -0.196066 197 74 SH5286 5286 snR30 snR30 281 295 30.500768 166.487441 98.4941045 1.993410236 -0.040906 197 75 SH8898 8898 LSR1 / U2 RNA U2 1131 1147 29.663231 142.782579 86.222905 1.935622651 0.028241 197 76 SH11255 11255 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3161 3174 35.460928 179.540936 107.500932 2.031412229 0.09465 197 77 SH7866 7866 snoRNA cluster1 intergenic/snR73 34.733632 185.86401 34.733632 152.130378 93.432005 1.970495669 0.293658 197 78 SH12604 12604 MT_15S MT_15S 28.306331 173.39222 28.306331 146.085889 87.19611 1.940497111 -0.088196 197 79 SH6696 6696 snR49 snR49 6 22 37.201252 166.03448 101.617866 2.00697007 0.284016 197 80 SH7302 7302 snR66 snR66 1 20 52.119828 227.088822 139.604325 2.144898873 -0.153333 197 81 SH21215 21215 YOR122C spliced 27.047698 147.637557 87.3426275 1.941226253 -0.192222 197 82 SH8472 8472 snoRNA cluster 5 3' 29.199126 188.205445 29.199126 160.006319 94.6027225 1.975903635 -0.095934 197 83 SH2928 2928 Pro8 3' flank 29.349892 188.908044 109.128968 2.037940048 -0.241171 197 84 SH7729 7729 snoRNA cluster1 intergenic 29.440605 186.445644 29.440605 158.005039 93.722822 1.971845357 -0.068645 197 85 SH16484 16484 YER102W_5_362729_363698_INTRON_1_360 intron 31.451747 184.026664 31.451747 153.574917 92.513332 1.966204323 0.091528 197 86 SH10069 10069 RUF6 RUF6 191 208 63.288174 247.179564 155.233869 2.190986482 -0.175485 197 87 SH5074 5074 snR11 5' 31.314746 132.119513 81.7171295 1.912313103 0.202837 197 88 SH15848 15848 YDL075W_4_322225_322987_INTRON_58_478 intron 31.178272 202.68882 31.178272 172.510548 101.84441 2.007937197 -0.035944 197 89 SH19416 19416 YPR132W_16_794960_795762_INTRON_66_430 exon/intron 29.062721 204.996367 29.062721 176.933646 102.9981835 2.012829565 -0.193018 197 90 SH1922 1922 Lys1 66-72 + 3' flank 66 82 32.814986 146.376239 89.5956125 1.952286743 0.218475 197 91 SH5020 5020 snR10 snR10 131 149 30.726107 157.144133 93.93512 1.972827995 0.024474 197 92 SH20658 20658 YIL018W spliced 38.369382 152.52507 95.447226 1.979763311 0.464261 197 93 SH9208 9208 snR6 / U6 RNA 5' 30.56515 176.653322 103.609236 2.015398471 -0.097182 197 94 SH20804 20804 YKL180W spliced 38.299499 185.555994 111.9277465 2.04893776 0.094705 197 95 SH5943 5943 snR36 snR36 171 186 36.439658 158.032847 97.2362525 1.987828213 0.342585 197 96 SH8304 8304 snoRNA cluster4 intergenic 34.644549 224.505498 34.644549 190.860949 112.752749 2.052127139 -0.037645 197 97 SH19517 19517 ACT1 27.033554 132.282243 79.6578985 1.901228845 -0.104934 197 98 SH18082 18082 YLR344W_12_819312_820142_INTRON_20_466 intron 29.209142 188.239841 29.209142 160.030699 94.6199205 1.975982579 -0.095345 197 99 SH10053 10053 RUF6 RUF6 111 127 27.480725 154.710376 91.0955505 1.959497165 -0.195239 197 100 SH168 168 Arg2 5' flank 33.767878 175.190132 104.479005 2.019029028 0.077441 197 101 SH20832 20832 YKR095W-A spliced 30.039688 175.19548 102.617584 2.011221786 -0.12118 197 102 SH9009 9009 snR17a / U3a U3a 331 353 26.229132 136.043154 81.136143 1.909214359 -0.190295 197 103 SH17057 17057 YGR214W_7_920570_921783_INTRON_91_545 intron 28.529863 175.358125 28.529863 147.828262 88.1790625 1.945365477 -0.08087 197 104 SH5652 5652 snR34 snR34 181 198 130.830126 304.719802 217.774964 2.338007951 0.106055 198 2 SH12947 12947 MT COX1 COX1ai2 28.323358 199.003444 28.323358 171.680086 100.001722 2.000007478 -0.216177 198 3 SH2600 2600 Pro3 5' flank 28.168496 140.273327 84.2209115 1.925419937 -0.066836 198 4 SH10176 10176 RUF6 RUF6 726 745 30.028487 150.565143 90.296815 1.955672432 0.011458 198 5 SH8045 8045 snoRNA cluster 2 intergenic 27.821107 183.781297 27.821107 156.96019 92.3906485 1.965628015 -0.180691 198 6 SH19724 19724 Negative Control 33.644495 178.492251 106.068373 2.025585907 0.041545 198 7 SH8681 8681 LSR1 / U2 RNA U2 46 63 29.45628 174.79088 102.12358 2.009126031 -0.155494 198 8 SH5485 5485 snR32 snR32 86 103 35.213528 154.356467 94.7849975 1.976739603 0.30455 198 9 SH15189 15189 MT COX3 cox3 33.064856 184.490355 33.064856 152.425499 92.7451775 1.967291337 0.199645 198 10 SH7061 7061 snR62 96-100 + 3' 96 30.962732 140.403493 85.6831125 1.932895234 0.131636 198 11 SH6377 6377 snR43 snR43 126 141 32.796829 190.068308 111.4325685 2.047012141 -0.09506 198 12 SH1288 1288 Ile2 3' flank 26.872052 135.782005 81.3270285 1.910234904 -0.138899 198 13 SH16975 16975 YGR034W_7_555923_556666_INTRON_20_496 intron 30.672599 203.138372 30.672599 173.465773 102.069186 2.008894651 -0.072122 198 14 SH12881 12881 MT COX1 COX1ai1 30.603273 187.63162 30.603273 158.028347 94.31581 1.974584499 0.011616 198 15 SH10818 10818 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 976 991 11109.56434 10820.65991 10965.11212 4.040013077 -0.113083 198 16 SH1132 1132 Gly4 3' flank 32.41328 187.050892 109.732086 2.040333635 -0.082148 198 17 SH17394 17394 YIL069C_9_232366_231550_INTRON_4_412 intron 32.361478 199.010858 32.361478 167.64938 100.005429 2.000023577 0.062727 198 18 SH12340 12340 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.235783 223.420718 34.235783 190.184935 112.210359 2.050032952 -0.044657 198 19 SH12143 12143 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7601 7618 36.11157 199.009433 117.5605015 2.07026143 -0.099355 198 20 SH3414 3414 Trp1 5' flank 28.410464 143.175335 85.7928995 1.933451346 -0.064779 198 21 SH14161 14161 MT COB intronic 27.430411 169.972352 27.430411 143.541941 85.486176 1.93189589 -0.140707 198 22 SH3432 3432 Trp1 5' flank - tRNA7 7 39.851387 207.201807 123.526597 2.091760477 -0.126719 198 23 SH15941 15941 YDL125C_4_239605_239018_INTRON_98_208 5' exon 36.010234 206.335151 36.010234 171.324917 103.6675755 2.015642942 0.192107 198 24 SH6802 6802 snR52 5' 36.012364 183.637499 109.8249315 2.040700941 0.073777 198 25 SH19678 19678 SIR1 2.4 37.939465 183.950723 110.945094 2.045108102 0.106946 198 26 SH11682 11682 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5296 5311 4960.46379 4332.50545 4646.48462 3.667124504 0.29918 198 27 SH7446 7446 snR69 3' 30.309083 144.493213 87.401148 1.941517137 0.064106 198 28 SH18597 18597 YNL069C_14_494998_493953_INTRON_29_477 intron 30.31226 199.960768 30.31226 170.648508 100.480384 2.002081286 -0.077577 198 29 SH18257 18257 YML056C_13_164176_162194_INTRON_461_868 5' exon 39.879077 187.998962 39.879077 149.119885 94.499481 1.975429423 0.548592 198 30 SH5890 5890 snR36 5' 26.453433 174.863072 100.6582525 2.002849386 -0.372803 198 31 SH1849 1849 Leu9 5' flank - tRNA3 3 34.04819 200.254414 117.151302 2.06874712 -0.154563 198 32 SH15367 15367 YBL027W_2_168385_169338_INTRON_3_386 intron 32.082116 181.549474 32.082116 150.467358 91.274737 1.96035059 0.14927 198 33 SH10133 10133 RUF6 RUF6 511 527 35.83824 179.766146 107.802193 2.032627596 0.105213 198 34 SH686 686 Gln3 5' flank 32.948251 171.134294 102.0412725 2.008775866 0.075416 198 35 SH14546 14546 MT 21S rRNA 21S rRNA3 37.711279 237.373707 37.711279 200.662428 119.1868535 2.076228355 -0.086704 198 36 SH16247 16247 YDR381W_4_1236547_1237993_INTRON_286_1051 3' exon 33.959528 183.958422 33.959528 150.998894 92.479211 1.966044116 0.259109 198 37 SH20361 20361 YER131W spliced 51.317556 230.91357 141.115563 2.149574913 -0.200623 198 38 SH21542 21542 copy of SH4152 49.6302 198.41262 124.02141 2.093496665 0.108385 198 39 SH18729 18729 YNL147W_14_350937_351380_INTRON_19_138 intron 28.632811 164.593605 28.632811 136.960794 82.7968025 1.918013565 -0.013779 198 40 SH5812 5812 snR35 snR35 246 263 28.803233 151.402303 90.102768 1.954738133 -0.079488 198 41 SH16475 16475 YER102W_5_362729_363698_INTRON_1_360 intron 28.963725 190.309365 28.963725 162.34564 95.6546825 1.980706235 -0.12449 198 42 SH1134 1134 Gly4 3' flank 2117.435503 1844.562041 1980.998772 3.296884206 0.529235 198 43 SH11986 11986 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6816 6833 82.616915 245.920442 164.2686785 2.215554763 0.068069 198 44 SH4910 4910 snR9 5' 97.592567 247.228138 172.4103525 2.23656334 0.213302 198 45 SH3006 3006 Ser2 5' flank - tRNA9 9 29.237212 156.937847 93.0875295 1.968891504 -0.077543 198 46 SH16597 16597 YFL034C-A_6_64931_64242_INTRON_13_333 intron 32.150086 200.045618 32.150086 168.895532 100.522809 2.002264616 0.042951 198 47 SH19503 19503 YPT1 29.126974 163.0503 96.088637 1.982672033 -0.116335 198 48 SH14600 14600 MT 21S rRNA Sce1 endonuc 36.869377 206.73993 36.869377 170.870553 103.869965 2.016489985 0.224833 198 49 SH2931 2931 Pro8 3' flank 134.254057 333.732417 233.993237 2.369203305 -0.035613 198 50 SH6251 6251 snR42 snR42 36 52 45.378851 194.950166 120.1645085 2.079776214 0.091085 198 51 SH2916 2916 Pro8 101-105 + 3' flank 101 31.641216 146.46042 89.050818 1.949637913 0.142417 198 52 SH16755 16755 YGL076C_7_365994_364333_INTRON_565_1032 3' exon 32.532726 202.288587 32.532726 170.755861 101.6442935 2.007083002 0.053939 198 53 SH12611 12611 MT_15S MT_15S 75.207805 314.330306 75.207805 240.122501 157.665153 2.197735717 0.031834 198 54 SH14817 14817 "MT tRNAs (Lys, Arg1, Gly)" intergenic 217.099844 650.022639 217.099844 433.922795 325.5113195 2.512566096 0.021658 198 55 SH13406 13406 MT COX1 intronic 30.637073 196.43183 30.637073 166.794757 98.715915 1.994387175 -0.034444 198 56 SH13084 13084 MT COX1 COX1ai3 30.746367 208.158522 30.746367 178.412155 104.579261 2.019445569 -0.096197 198 57 SH12600 12600 MT_15S MT_15S 3722.631315 7721.4999 3722.631315 3999.868585 3861.24995 3.586727916 0.053033 198 58 SH15485 15485 YBL092W_2_45639_46364_INTRON_1_333 intron 33.014445 211.761228 33.014445 179.746783 106.380614 2.026862493 0.00708 198 59 SH21718 21718 copy of SH11503 13347.48117 10123.55357 11735.51737 4.06950224 0.230382 198 60 SH17811 17811 YKR057W_11_551293_551878_INTRON_25_346 intron 35.295333 190.815281 35.295333 156.519948 95.9076405 1.981853207 0.294747 198 61 SH14221 14221 MT ATP9 ATP9 33.397017 224.908737 33.397017 192.51172 112.9543685 2.052903032 -0.094891 198 62 SH12220 12220 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.410583 212.102378 33.410583 179.691795 106.551189 2.0275583 0.021885 198 63 SH8127 8127 snoRNA cluster 3; snR41 33.346817 226.809706 33.346817 194.462889 113.904853 2.056542228 -0.11371 198 64 SH1912 1912 Lys1 tRNA 16 28 35.179562 173.397171 104.2883665 2.018235865 0.143861 198 65 SH10136 10136 RUF6 RUF6 526 538 32.996858 170.413737 101.7052975 2.007343575 0.082458 198 66 SH18813 18813 YNL302C_14_62942_61957_INTRON_21_571 intron 36.630118 213.371975 36.630118 177.741857 107.1859875 2.030138013 0.150504 198 67 SH15613 15613 YBR181C_2_592732_591670_INTRON_7_358 exon/intron 34.379568 217.104125 34.379568 183.724557 109.0520625 2.037633884 0.018681 198 68 SH19759 19759 Negative Control 32.163262 184.66755 108.415406 2.035091001 -0.069785 198 69 SH16823 16823 YGL178W_7_167356_170575_INTRON_4_643 intron 31.899894 177.303161 31.899894 146.403267 89.1515805 1.950129047 0.159631 198 70 SH1716 1716 Leu6 3' flank 31.680723 176.406731 104.043727 2.017215901 -0.028749 198 71 SH7059 7059 snR62 86-100 + 3' 86 29.646204 164.282241 96.9642225 1.986611519 -0.085763 198 72 SH4825 4825 snR8 5' 31.420313 192.784799 112.102556 2.049615515 -0.170371 198 73 SH8938 8938 snR17a / U3a 5' 27.65643 118.469176 73.062803 1.86369633 0.033348 198 74 SH16575 16575 YER179W_5_548416_549512_INTRON_133_224 exon/intron 31.410245 183.89895 31.410245 153.488705 92.449475 1.965904449 0.089242 198 75 SH17631 17631 YJR094W-A_10_608000_608553_INTRON_3_277 intron 37.11255 204.914796 37.11255 168.802246 102.957398 2.012657558 0.253258 198 76 SH3228 3228 Thr1 5' flank - tRNA12 12 76.988807 208.044247 142.516527 2.15386523 0.341991 198 77 SH1414 1414 Leu1 3' flank 191.857609 405.906268 298.8819385 2.475499671 -0.001726 198 78 SH7144 7144 snR63 snR63 226 244 32.02066 165.360857 98.6907585 1.994276487 0.0569 198 79 SH9745 9745 RUF4 RUF4 501 515 91.153392 265.893076 178.523234 2.251694746 0.007602 198 80 SH14418 14418 MT 21S rRNA 21S rRNA3 138.739698 483.206623 138.739698 345.466925 242.1033115 2.38400073 -0.064656 198 81 SH12673 12673 MT tRNA Trp 5' 24.98603 161.509807 24.98603 137.523777 81.2549035 1.909849579 -0.299124 198 82 SH16614 16614 YFL039C_6_54695_53260_INTRON_11_318 5' exon 29.062744 180.777951 29.062744 152.715207 90.8889755 1.958511208 -0.067868 198 83 SH10217 10217 RUF6 RUF6 931 950 29.205425 149.586967 89.396196 1.951319039 -0.040939 198 84 SH16544 16544 YER133W_5_432491_433954_INTRON_178_702 exon/intron 31.263683 210.877711 31.263683 180.614028 105.9388555 2.025055277 -0.077468 198 85 SH12584 12584 MT_15S MT_15S 27.335962 156.322365 27.335962 129.986403 78.6611825 1.895760471 -0.067546 198 86 SH11406 11406 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3916 3933 47.065162 186.227025 116.6460935 2.066870199 0.217267 198 87 SH6555 6555 snR46 3' 104.218119 286.771589 195.494854 2.29113533 -0.008307 198 88 SH11143 11143 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2601 2617 836.931983 950.396519 893.664251 2.951174385 0.377615 198 89 SH18552 18552 YMR230W_13_732413_733140_INTRON_53_462 intron 32.802791 213.940591 32.802791 182.1378 107.4702955 2.031288443 -0.022923 198 90 SH19143 19143 YPL075W_16_412249_415357_INTRON_9_759 intron 32.639027 227.113419 32.639027 195.474392 114.0567095 2.057120838 -0.148164 198 91 SH8871 8871 LSR1 / U2 RNA U2 996 1012 49.92559 183.827244 116.876417 2.067726889 0.283942 198 92 SH10151 10151 RUF6 RUF6 601 623 28.541391 166.424186 97.4827885 1.988927944 -0.175074 198 93 SH11761 11761 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5691 5708 1922.889059 1230.2193 1576.55418 3.1977089 1.038845 198 94 SH19447 19447 CYC1 28.503576 141.412659 84.9581175 1.929204881 -0.048234 198 95 SH19395 19395 YPR043W_16_654161_654842_INTRON_3_405 3' exon 32.428499 225.938767 32.428499 194.510268 113.4693835 2.054878695 -0.147573 198 96 SH10910 10910 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1436 1451 20711.49222 21601.06165 21156.27693 4.325439243 -0.40589 198 97 SH7501 7501 snR71 3' 32.800846 162.094933 97.4478895 1.988772438 0.122168 198 98 SH3607 3607 Val1 tRNA 31 46 82.561077 213.525075 148.043076 2.1703881 0.349198 198 99 SH1505 1505 Leu3 5' flank - tRNA12 12 218.070464 458.118884 338.094674 2.529038329 -0.067422 198 100 SH254 254 Arg3 3' flank 43.804077 208.680382 126.2422295 2.101204656 -0.084488 198 101 SH10629 10629 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 31 51 30.035864 169.221673 99.6287685 1.998384762 -0.08617 198 102 SH4325 4325 telomerase RNA telomerase 661 678 30.338738 161.800356 96.069547 1.982585743 -0.02551 198 103 SH1717 1717 Leu6 3' flank 28.55147 174.503957 101.5277135 2.006584606 -0.212746 198 104 SH2642 2642 Pro3 3' flank 32.986701 213.010674 122.9986875 2.089900477 -0.311465 199 2 SH11505 11505 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4411 4428 344.34743 509.780466 427.063948 2.630492911 0.294257 199 3 SH4956 4956 snR9 186-187 + 3' 186 30.255771 148.228802 89.2422865 1.950570689 0.039776 199 4 SH13360 13360 MT COX1 intronic 32.117694 214.428728 32.117694 183.311034 107.714364 2.032273621 -0.059042 199 5 SH21052 21052 YMR143W spliced 29.905259 166.642173 98.273716 1.992437378 -0.079262 199 6 SH19515 19515 ACT1 39.777559 175.271795 107.524677 2.031508147 0.245676 199 7 SH3868 3868 RNaseP RNaseP 306 322 39.549719 178.520241 109.03498 2.037565848 0.201617 199 8 SH11612 11612 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4946 4959 79.286155 219.515073 149.400614 2.174352382 0.258028 199 9 SH14436 14436 MT 21S rRNA 21S rRNA3 35.212484 195.477251 35.212484 161.264767 98.2386255 1.992282277 0.260011 199 10 SH17805 17805 YKL190W_11_82949_83552_INTRON_53_128 intron/exon 46.913088 262.425347 46.913088 216.512259 131.7126735 2.119627565 -0.122992 199 11 SH14774 14774 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu / intergenic 33.007807 209.588291 33.007807 177.580484 105.2941455 2.022404224 0.0273 199 12 SH13669 13669 MT ATP6 ATP6 30.966237 208.35483 30.966237 178.388593 104.677415 2.019852989 -0.082743 199 13 SH21933 21933 copy of SH21373 63.215641 215.873613 139.544627 2.144713119 0.102716 199 14 SH15678 15678 YBR191W_2_606228_607098_INTRON_12_399 intron 30.839729 200.215976 30.839729 170.376247 100.607988 2.002632464 -0.043705 199 15 SH6949 6949 snR58 3' 26.903709 128.169705 77.536707 1.889507352 -0.088662 199 16 SH12774 12774 MT COX1 COX1ai1 28.803769 199.620985 28.803769 171.817216 100.3104925 2.001346363 -0.181918 199 17 SH9078 9078 snR14 / U4 RNA U4 6 22 87.265766 283.17529 185.220528 2.267689118 -0.155644 199 18 SH19723 19723 Negative Control 32.607771 187.855964 110.2318675 2.042307165 -0.082229 199 19 SH1093 1093 Gly4 5' flank 36.44884 208.118402 122.283621 2.08736829 -0.190367 199 20 SH20912 20912 YLR333C spliced 30.613759 183.784456 107.1991075 2.03019117 -0.134419 199 21 SH18354 18354 YMR033W_13_337787_339276_INTRON_31_116 5' exon 26.730767 196.93017 26.730767 171.199403 98.965085 1.995482002 -0.334007 199 22 SH15218 15218 MT COX3 cox3 28.642357 161.013581 28.642357 133.371224 81.0067905 1.908521426 0.00762 199 23 SH17531 17531 YJL177W_10_90783_91654_INTRON_310_626 5' exon 26.702474 184.487519 26.702474 158.785045 92.7437595 1.967284697 -0.276003 199 24 SH745 745 Gln4 5' flank - tRNA15 15 71.243757 241.285694 156.2647255 2.193860953 -0.025395 199 25 SH21851 21851 copy of SH17601 31.510257 163.53244 97.5213485 1.989099698 0.038158 199 26 SH12081 12081 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7291 7309 32.47218 192.78297 112.627575 2.051644733 -0.130908 199 27 SH13047 13047 MT COX1 COX1ai2 32.466739 191.827922 32.466739 160.361183 96.413961 1.984139925 0.113955 199 28 SH20297 20297 YEL012W spliced 38.243216 189.461516 113.852366 2.05634206 0.048301 199 29 SH4714 4714 snR4 snR4 106 120 34.356923 144.650231 89.503577 1.951840392 0.323378 199 30 SH12343 12343 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.244464 219.939009 36.244464 184.694545 110.4695045 2.043242406 0.065822 199 31 SH20054 20054 YBR220C spliced 28.505386 133.678829 81.0921075 1.908978587 -0.004271 199 32 SH15689 15689 YBR191W_2_606228_607098_INTRON_12_399 intron/exon 26.547209 155.060098 26.547209 129.512889 78.030049 1.89226188 -0.124737 199 33 SH153 153 Arg1 3' flank 26.516794 141.849169 84.1829815 1.925224303 -0.202497 199 34 SH20307 20307 YER003C spliced 32.251284 184.274448 108.262866 2.03447952 -0.062915 199 35 SH1517 1517 Leu3 tRNA-intron/exon 56 73 68.881666 205.096138 136.988902 2.136685385 0.27872 199 36 SH4836 4836 snR8 5' 36.202214 165.019017 100.6106155 2.002643806 0.261758 199 37 SH1264 1264 Ile2 tRNA 16 31 36.340215 161.898876 99.1195455 1.996159302 0.298527 199 38 SH10981 10981 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1791 1809 99.86671 282.290084 191.078397 2.281211589 -0.0197 199 39 SH4723 4723 snR4 snR4 151 168 30.874447 145.399571 88.137009 1.945158308 0.097395 199 40 SH1326 1326 Ile3 tRNA 11 25 34.972623 186.005138 110.4888805 2.043318573 0.018352 199 41 SH17056 17056 YGR214W_7_920570_921783_INTRON_91_545 intron 31.203798 182.265291 31.203798 152.061493 91.6326455 1.962050225 0.083125 199 42 SH12322 12322 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.344411 154.908651 29.344411 126.56424 77.9543255 1.891840218 0.100379 199 43 SH20059 20059 YBR255C-A spliced 28.419306 155.058723 91.7390145 1.96255407 -0.126668 199 44 SH18518 18518 YMR201C_13_667043_665844_INTRON_28_111 3' exon 164.028509 550.435244 164.028509 387.406735 275.717622 2.440464524 -0.092603 199 45 SH5978 5978 snR36 346-355 + 3' 346 363 33.36048 165.362455 99.3614675 1.997217997 0.133517 199 46 SH11689 11689 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5331 5348 23920.66843 30321.0126 27120.84051 4.433303145 -0.757848 199 47 SH18380 18380 YMR116C_13_500687_499455_INTRON_538_810 intron 85.741512 371.815264 85.741512 287.073752 186.407632 2.270463689 -0.198854 199 48 SH21575 21575 copy of SH5621 33.046589 172.834846 102.9407175 2.012587191 0.070941 199 49 SH4946 4946 snR9 snR9 136 153 30.956024 174.074623 102.5153235 2.010788787 -0.058487 199 50 SH7990 7990 snoRNA cluster 2 snR57/intergenic 28.887567 160.952243 28.887567 133.064676 80.9761215 1.908356972 0.027367 199 51 SH20091 20091 YDL012C spliced 32.671439 160.241949 96.456694 1.984332373 0.12646 199 52 SH16056 16056 YDL219W_4_65243_65766_INTRON_66_136 5' exon 33.558771 209.351308 33.558771 176.792537 105.175654 2.021915221 0.054635 199 53 SH906 906 Glu3 tRNA 41 53 1524.560995 2023.536043 1774.048519 3.248965493 -0.04889 199 54 SH7408 7408 snR69 5' 30.62501 143.588005 87.1065075 1.940050601 0.090717 199 55 SH21015 21015 YMR033W spliced 34.564614 174.945152 104.754883 2.020174276 0.107738 199 56 SH11447 11447 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4121 4138 34.685684 183.6796 109.182642 2.038153599 0.029713 199 57 SH4026 4026 SRP RNA SRP RNA 21 37 34.846815 164.977752 99.9122835 1.999618885 0.216468 199 58 SH17766 17766 YKL157W_11_154993_158183_INTRON_282_664 3' exon 29.133631 170.001128 29.133631 141.867497 85.500564 1.93196898 -0.00469 199 59 SH12752 12752 MT COX1 COX1ai1 29.279839 162.497063 29.279839 134.217224 81.7485315 1.91247996 0.049053 199 60 SH276 276 Arg4 5' flank 29.399922 156.242466 92.821194 1.967647151 -0.062428 199 61 SH19813 19813 Negative Control 31.460358 193.122294 112.291326 2.05034621 -0.171797 199 62 SH8627 8627 snR19 / U1 RNA U1 631 643 805.104267 1258.520767 1031.812517 3.013600792 -0.124258 199 63 SH2979 2979 Ser1 3' flank 27.453694 116.585389 72.0195415 1.857450352 0.031649 199 64 SH13786 13786 MT COB intronic 31.288195 211.986571 31.288195 181.698376 106.4932855 2.027322226 -0.082085 199 65 SH8656 8656 LSR1 / U2 RNA 5' 29.13145 144.810597 86.9710235 1.939374581 -0.020849 199 66 SH4030 4030 SRP RNA SRP RNA 41 59 29.877818 150.679815 90.2788165 1.955585857 0.000402 199 67 SH47 47 Ala1 3' flank 30.583111 171.179748 100.8814295 2.003811228 -0.064105 199 68 SH20035 20035 YBR186W spliced 30.312739 180.291069 105.301904 2.022436224 -0.133394 199 69 SH7848 7848 snoRNA cluster1 snR74/intergenic 31.961834 218.645626 31.961834 187.683792 109.822813 2.040692564 -0.10465 199 70 SH2588 2588 Pro2 3' flank 30.795009 147.415934 89.1054715 1.949904373 0.080892 199 71 SH6430 6430 snR45 5' - 12 -4 12 54.148903 217.27183 135.7103665 2.132613023 -0.030375 199 72 SH2806 2806 Pro6 3' flank 37.071267 149.921913 93.49659 1.970795772 0.430276 199 73 SH9788 9788 RUF4 RUF4 716 738 38.882541 201.160932 120.0217365 2.079259906 -0.073874 199 74 SH17560 17560 YJL189W_10_75932_76473_INTRON_7_392 intron 29.546694 169.64033 29.546694 141.093636 85.320165 1.931051687 0.029223 199 75 SH11013 11013 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1951 1966 4919.599974 5308.784804 5114.192389 3.708777062 -0.034423 199 76 SH9526 9526 RUF3 RUF3 16 30 33.46221 174.153206 103.807708 2.016229602 0.076565 199 77 SH7291 7291 snR66 5' 27.968353 144.728123 86.348238 1.93625348 -0.106217 199 78 SH13839 13839 MT COB Cytbi2 28.14019 167.056318 28.14019 139.916128 84.028159 1.924424849 -0.066966 199 79 SH3061 3061 Ser3 tRNA 1 13 349.166091 688.639625 518.902858 2.715086063 -0.190178 199 80 SH6847 6847 snR52 3' 61.3924 226.242147 143.8172735 2.157811051 -0.018257 199 81 SH425 425 Asp1 5' flank 30.68661 172.396195 101.5414025 2.006643158 -0.064984 199 82 SH432 432 Asp1 5' flank - tRNA2 5' flank 2 28.927623 144.89704 86.9123315 1.9390814 -0.036102 199 83 SH17045 17045 YGR214W_7_920570_921783_INTRON_91_545 exon/intron 31.023683 200.702647 31.023683 170.678964 100.8513235 2.003681602 -0.034391 199 84 SH6745 6745 snR50 5' 31.112465 175.131699 103.122082 2.013351673 -0.055215 199 85 SH11620 11620 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4986 5003 476.183316 637.828364 557.00584 2.745859749 0.319196 199 86 SH17154 17154 YHR012W_8_129473_130440_INTRON_49_167 intron 29.137004 186.517774 29.137004 158.38077 93.758887 1.972012443 -0.092082 199 87 SH17384 17384 YIL069C_9_232366_231550_INTRON_4_412 5' exon 29.05343 202.216492 29.05343 174.163062 101.608246 2.006928954 -0.17758 199 88 SH7774 7774 snoRNA cluster1 intergenic 79.934296 327.105957 79.934296 248.171661 164.0529785 2.21498412 0.019923 199 89 SH10502 10502 RUF8 RUF8 436 452 32.681185 163.436836 98.0590105 1.991487507 0.10696 199 90 SH439 439 Asp1 tRNA 16 28 1684.213725 2496.351827 2090.282776 3.320205042 -0.246457 199 91 SH2124 2124 Met1 tRNA 6 22 319.247495 527.531147 423.389321 2.6267399 0.145422 199 92 SH9466 9466 RUF2 RUF2 171 187 32.290611 162.630931 97.460771 1.988829843 0.089506 199 93 SH10036 10036 RUF6 RUF6 26 43 30.327485 162.095412 96.2114485 1.983226753 -0.027756 199 94 SH1797 1797 Leu8 tRNA 11 25 1788.381491 2575.57519 2181.978341 3.338850435 -0.215956 199 95 SH20654 20654 YIL018W spliced 34.275247 193.652964 113.9641055 2.056768086 -0.076856 199 96 SH4676 4676 snR4 5' 52.871876 189.550446 121.211161 2.083542611 0.251518 199 97 SH13253 13253 MT COX1 COX1-ai4 26.910464 170.135275 26.910464 144.224811 85.5676375 1.932309541 -0.18471 199 98 SH2618 2618 Pro3 tRNA-intron 41 58 29.108933 165.259676 97.1843045 1.987596131 -0.128524 199 99 SH767 767 Gln4 3' flank 31.382992 173.829541 102.6062665 2.011173885 -0.031448 199 100 SH15431 15431 YBL072C_2_89435_88518_INTRON_1_308 intron 29.710705 194.556758 29.710705 165.846053 97.778379 1.990242833 -0.088928 199 101 SH15143 15143 MT tRNA Thr1 reverse complement 5' 27.999625 181.718509 27.999625 154.718884 91.3592545 1.960752547 -0.155885 199 102 SH8616 8616 snR19 / U1 RNA U1 576 592 28.283152 137.220325 82.7517385 1.917777126 -0.041132 199 103 SH20366 20366 YER133W spliced 30.620172 181.9362 106.278186 2.026444133 -0.123759 199 104 SH12160 12160 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7686 7705 32.979146 183.769521 108.3743335 2.03492644 -0.03155 200 2 SH16864 16864 YGL187C_7_150529_149708_INTRON_1_342 intron 49.198469 276.028199 49.198469 227.82973 138.5140995 2.141493983 -0.202274 200 3 SH14660 14660 MT 21S rRNA 21S rRNA4 30.328518 176.236499 30.328518 146.907981 88.6182495 1.947523167 0.05201 200 4 SH21485 21485 copy of SH1851 947.829953 1616.183085 1282.006519 3.107890234 -0.314125 200 5 SH18339 18339 YML124C_13_23684_22049_INTRON_26_323 intron 400.783333 960.561069 400.783333 560.777736 480.7805345 2.681946876 0.319787 200 6 SH15624 15624 YBR181C_2_592732_591670_INTRON_7_358 intron 64.288596 308.978372 64.288596 245.689776 154.989186 2.190301397 -0.149817 200 7 SH2208 2208 Phe1 5' flank 37.748492 191.508526 114.628509 2.059292643 0.015684 200 8 SH2167 2167 Met2 5' flank 33.585259 181.857269 107.721264 2.032301441 0.007917 200 9 SH19715 19715 Negative Control 33.456903 173.982504 103.7197035 2.015861267 0.07803 200 10 SH14828 14828 "MT tRNAs (Lys, Arg1, Gly)" 3' 29.385953 181.074621 29.385953 152.688668 91.0373105 1.959219419 -0.044775 200 11 SH1012 1012 Gly2 tRNA 51 63 33.253695 166.015887 99.634791 1.998411014 0.123517 200 12 SH10590 10590 RUF8 RUF8 876 893 31.202373 153.314448 92.2584105 1.965005968 0.076382 200 13 SH14980 14980 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 33.102036 195.217618 33.102036 163.115582 98.108809 1.991708004 0.132878 200 14 SH4828 4828 snR8 5' 35.002966 175.447518 105.225242 2.022119933 0.117996 200 15 SH21023 21023 YMR079W spliced 36.906218 210.377678 123.641948 2.092165839 -0.207557 200 16 SH11403 11403 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3901 3916 4962.743376 5207.587399 5085.165388 3.706305082 0.007483 200 17 SH558 558 Cys1 3' flank 28.991383 139.494245 84.242814 1.925532865 -0.001852 200 18 SH14038 14038 MT COB Cytbi4 27.014237 164.416647 27.014237 138.40241 82.7083235 1.917549218 -0.143887 200 19 SH7258 7258 snR65 snR65 66 83 30.891866 173.303579 102.0977225 2.009016054 -0.057855 200 20 SH1709 1709 Leu6 3' flank 34.773319 191.867218 113.3202685 2.054307595 -0.046472 200 21 SH17312 17312 YHR203C_8_505526_504472_INTRON_15_283 intron 34.755221 216.991814 34.755221 183.236593 108.995907 2.03741019 0.036187 200 22 SH6735 6735 snR49 3' 36.689684 182.228711 109.4591975 2.03925226 0.103732 200 23 SH19983 19983 YBL091C-A spliced 34.72636 178.21955 106.472955 2.027239307 0.082039 200 24 SH13147 13147 MT COX1 intronic 29.848294 202.621623 29.848294 173.773329 101.8108115 2.007793899 -0.124847 200 25 SH9850 9850 RUF5-1 RUF5-1 56 73 26.923696 177.091233 102.0074645 2.008631953 -0.346492 200 26 SH17109 17109 YHR001W-A_8_107819_108115_INTRON_7_69 intron 28.856602 175.910621 28.856602 148.054019 88.4553105 1.946723911 -0.058076 200 27 SH13141 13141 MT COX1 intronic 32.729676 223.774075 32.729676 192.044399 112.3870375 2.050716223 -0.114969 200 28 SH1994 1994 Lys3 5' flank 40.489156 206.720297 123.6047265 2.092035078 -0.111873 200 29 SH6384 6384 snR43 snR43 161 181 34.618793 157.693987 96.15639 1.98297815 0.250974 200 30 SH17940 17940 YLR093C_12_327416_326514_INTRON_17_157 3' exon 38.461147 231.374296 38.461147 193.913149 116.187148 2.065158091 0.00174 200 31 SH410 410 Asn1 3' flank 36.472297 214.061695 125.266996 2.097836663 -0.254327 200 32 SH14124 14124 MT COB intronic 30.624561 188.171788 30.624561 158.547227 94.585894 1.975826373 0.010404 200 33 SH4107 4107 SRP RNA SRP RNA 426 438 34.470947 184.756161 109.613554 2.039864259 0.012412 200 34 SH15051 15051 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.678184 217.104046 28.678184 189.425862 109.052023 2.037633726 -0.287232 200 35 SH15773 15773 YDL012C_4_431513_431104_INTRON_46_131 5' exon 30.653848 202.445164 30.653848 172.791316 101.722582 2.007417375 -0.069307 200 36 SH12391 12391 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.799218 178.365783 28.799218 150.566565 89.6828915 1.952709602 -0.075383 200 37 SH13136 13136 MT COX1 COX1ai3 28.916874 184.309929 28.916874 156.393055 92.6549645 1.966868694 -0.097589 200 38 SH13816 13816 MT COB Cytbi2 29.062222 197.540513 29.062222 169.478291 99.2702565 1.996819144 -0.152276 200 39 SH10341 10341 RUF7 RUF7 316 337 29.219688 169.993609 99.6066485 1.998288327 -0.143522 200 40 SH16241 16241 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 31.349731 194.510484 31.349731 164.160753 97.755242 1.990140055 0.024715 200 41 SH19299 19299 YPL198W_16_173151_174701_INTRON_12_420 exon/intron 33.473506 212.421674 33.473506 179.948168 106.710837 2.028208526 0.021733 200 42 SH18720 18720 YNL130C_14_381156_379555_INTRON_30_470 intron/exon 29.583606 190.097839 29.583606 161.514233 95.5489195 1.98022578 -0.076384 200 43 SH19758 19758 Negative Control 29.622178 183.364905 106.4935415 2.02732327 -0.193649 200 44 SH17790 17790 YKL186C_11_93537_92746_INTRON_71_233 intron 37.601115 252.055559 37.601115 215.454444 126.5277795 2.102185886 -0.250854 200 45 SH6114 6114 snR39B 5' 29.553974 161.57915 95.566562 1.980305963 -0.078789 200 46 SH869 869 Glu2 3' flank 31.44707 163.552195 97.4996325 1.989002979 0.034283 200 47 SH7751 7751 snoRNA cluster1 snR76 193.946116 619.671829 193.946116 426.725713 310.3359145 2.491832038 -0.077365 200 48 SH11125 11125 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2511 2527 9346.101741 15654.19409 12500.14791 4.096915152 -0.924387 200 49 SH19209 19209 YPL081W_16_404945_406039_INTRON_8_508 intron 31.047256 194.212295 31.047256 164.165039 97.6061475 1.989477172 0.006564 200 50 SH10109 10109 RUF6 RUF6 391 408 30.919105 153.910346 92.4147255 1.965741178 0.054313 200 51 SH20738 20738 YJL191W spliced 36.655224 193.403349 115.0292865 2.060808426 -0.026551 200 52 SH10017 10017 RUF6 5' 324.908414 598.394216 461.651315 2.664314077 -0.044262 200 53 SH1334 1334 Ile3 tRNA-intron 51 66 30.69299 143.860583 87.2767865 1.940898747 0.093782 200 54 SH21902 21902 copy of SH19202 30.699481 148.977223 89.838352 1.953461777 0.06591 200 55 SH6527 6527 snR46 snR46 126 143 52.190356 258.265624 155.22799 2.190970034 -0.424698 200 56 SH10865 10865 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1211 1227 665.89747 909.077002 787.487236 2.896243523 0.160334 200 57 SH2043 2043 Lys3 3' flank 34.908106 210.644237 122.7761715 2.089114087 -0.24708 200 58 SH4955 4955 snR9 181-187 + 3' 181 30.159914 152.417593 91.2887535 1.960417277 0.010615 200 59 SH21723 21723 copy of SH11713 87.969439 205.186999 146.578219 2.16606944 0.485059 200 60 SH6849 6849 snR52 3' 31.414424 161.828963 96.6216935 1.985074645 0.043103 200 61 SH20970 20970 YML034W spliced 41.446708 219.099753 130.2732305 2.114855183 -0.229265 200 62 SH1806 1806 Leu8 tRNA-intron/exon 56 72 33.493131 166.292356 99.8927435 1.999533941 0.135238 200 63 SH12988 12988 MT COX1 COX1ai2 31.445929 201.690817 31.445929 171.244888 101.3454085 2.005804078 -0.012483 200 64 SH6223 6223 snR40 3' 31.31737 171.042405 101.1798875 2.005094192 -0.018939 200 65 SH12665 12665 MT_15S MT_15S 31.12611 186.550642 31.12611 156.424532 93.775321 1.972088559 0.055035 200 66 SH6907 6907 snR56 3' 30.888222 172.860922 101.874572 2.008065797 -0.055477 200 67 SH17824 17824 YKR057W_11_551293_551878_INTRON_25_346 intron 32.559128 238.002411 32.559128 206.443283 119.5012055 2.077372286 -0.252491 200 68 SH1142 1142 His1 5' flank 30.360252 167.195245 98.7777485 1.994659123 -0.053849 200 69 SH12044 12044 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7106 7123 39.635696 181.033008 110.334352 2.042710749 0.172712 200 70 SH20528 20528 YGR118W spliced 35.577141 165.38977 100.4834555 2.002094561 0.237106 200 71 SH11405 11405 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3911 3926 12707.83575 7489.441663 10098.63871 4.004262835 0.646425 200 72 SH3798 3798 RNaseP 5' flank 35.257804 160.72954 97.993672 1.991198032 0.265794 200 73 SH20057 20057 YBR255C-A spliced 33.3199 179.448977 106.3844385 2.026878106 0.020911 200 74 SH15153 15153 MT tRNA Thr1 reverse complement 3' 29.573896 183.73055 29.573896 155.156654 92.365275 1.965508728 -0.044534 200 75 SH4707 4707 snR4 snR4 71 83 86.091985 224.213045 155.152515 2.19075882 0.288657 200 76 SH11763 11763 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5701 5718 3979.422929 1834.684002 2907.053466 3.463453019 1.370474 200 77 SH7610 7610 snR189 snR189 121 137 27.933114 153.237601 90.5853575 1.957058003 -0.153396 200 78 SH18279 18279 YML056C_13_164176_162194_INTRON_461_868 3' exon 31.866509 225.591591 31.866509 194.725082 113.2957955 2.054213793 -0.170378 200 79 SH5469 5469 snR32 snR32 6 24 28.252494 162.761291 95.5068925 1.980034715 -0.178159 200 80 SH11583 11583 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4801 4814 153.83504 372.692401 263.2637205 2.420391015 -0.092827 200 81 SH10562 10562 RUF8 RUF8 736 752 41.184937 173.157334 107.1711355 2.030077832 0.296709 200 82 SH17954 17954 YLR185W_12_522665_523290_INTRON_8_366 intron 34.616769 235.854683 34.616769 202.237914 118.4273415 2.07345198 -0.164312 200 83 SH7515 7515 snR79 5' 34.776885 205.572943 120.174914 2.07981382 -0.19667 200 84 SH2251 2251 Phe1 3' flank 32.923411 175.778351 104.350881 2.01849612 0.041445 200 85 SH2646 2646 Pro3 3' flank 32.961233 155.730308 94.3457705 1.974722436 0.171984 200 86 SH1416 1416 Leu1 3' flank 34.897185 192.927628 113.9124065 2.056571027 -0.05596 200 87 SH1216 1216 Ile1 tRNA 41 53 4742.939658 2503.402596 3623.171127 3.559088847 1.110302 200 88 SH21739 21739 copy of SH12549 26.914592 134.780141 80.8473665 1.907665878 -0.129508 200 89 SH18064 18064 YLR344W_12_819312_820142_INTRON_20_466 exon/intron 32.61209 200.459077 32.61209 168.846987 100.7295385 2.003156844 0.069916 200 90 SH5403 5403 snR31 snR31 81 96 32.472345 154.278129 93.375237 1.970231717 0.153568 200 91 SH11492 11492 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4346 4361 28645.66681 25097.12301 26871.39491 4.429290211 -0.223709 200 92 SH17438 17438 YIL133C_9_99416_98527_INTRON_32_321 intron 66.925271 315.660296 66.925271 249.735025 158.330148 2.199563618 -0.148698 200 93 SH2803 2803 Pro6 3' flank 28.391317 137.447646 82.9194815 1.918656578 -0.034383 200 94 SH5158 5158 snR13 5' 36.079244 196.189725 116.1344845 2.064961197 -0.06891 200 95 SH8905 8905 LSR1 / U2 RNA 1166-1175 + 3' 1166 26.576336 135.223824 80.90008 1.907948951 -0.158243 200 96 SH11331 11331 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3541 3556 8892.326831 8555.687531 8724.007181 3.940716014 -0.027359 200 97 SH13927 13927 MT COB Cytbi3 48.351739 251.674773 48.351739 204.323034 126.3373865 2.101531889 0.025758 200 98 SH21898 21898 copy of SH19003 31.069734 138.528399 84.7990665 1.928391071 0.149379 200 99 SH1477 1477 Leu2 3' flank 45.296357 223.070429 134.183393 2.127698769 -0.212688 200 100 SH10696 10696 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 366 384 29.706323 155.209891 92.458107 1.965944997 -0.03554 200 101 SH12620 12620 MT_15S MT_15S 38.136006 240.656131 38.136006 203.520125 120.8280655 2.082167822 -0.112153 200 102 SH5855 5855 snR35 snR35 461 482 30.316349 172.882844 101.5995965 2.006891983 -0.090541 200 103 SH14365 14365 MT ORF9 and ORF10 (hypothetical) ORF9 28.523879 206.471112 28.523879 178.947233 103.735556 2.015927639 -0.2395 200 104 SH17218 17218 YHR041C_8_189855_189122_INTRON_15_115 exon/intron 31.892084 222.320311 31.892084 191.428227 111.6601555 2.047898228 -0.140602 201 2 SH17969 17969 YLR185W_12_522665_523290_INTRON_8_366 intron 30.560625 217.66832 30.560625 188.107695 109.33416 2.038755873 -0.162161 201 3 SH5775 5775 snR35 snR35 61 77 55.30078 217.968883 136.6348315 2.135561426 -0.021214 201 4 SH1308 1308 Ile3 5' flank 28.253855 122.311522 75.2826885 1.87669512 0.050815 201 5 SH415 415 Asn1 3' flank 37.31031 206.824324 122.067317 2.086599399 -0.162094 201 6 SH21148 21148 YNL246W spliced 34.100426 186.302874 110.20165 2.042188097 -0.014602 201 7 SH8760 8760 LSR1 / U2 RNA U2 441 457 35.984241 155.741682 95.8629615 1.981650842 0.335947 201 8 SH120 120 Arg1 5' flank 33.838717 178.105881 105.972299 2.025192356 0.052097 201 9 SH7982 7982 snoRNA cluster 2 snR57 64.917382 280.01894 64.917382 216.101558 140.50947 2.147705596 0.12219 201 10 SH3527 3527 Tyr2 5' flank 29.631222 140.660124 85.145673 1.930162583 0.037638 201 11 SH15442 15442 YBL087C_2_60732_59815_INTRON_43_546 5' exon 33.532333 216.673787 33.532333 184.141454 108.8368935 2.036776137 -0.015035 201 12 SH18215 18215 YML025C_13_225365_224406_INTRON_28_126 intron 29.472741 192.299271 29.472741 163.82653 96.6496355 1.98520022 -0.095691 201 13 SH14474 14474 MT 21S rRNA 21S rRNA3 29.399862 206.000527 29.399862 177.600665 103.5002635 2.014941455 -0.17528 201 14 SH19740 19740 Negative Control 41.204704 192.476395 116.8405495 2.067593591 0.061791 201 15 SH8775 8775 LSR1 / U2 RNA U2 516 532 34.202265 156.613932 95.4080985 1.97958524 0.235328 201 16 SH18094 18094 YLR367W_12_855877_857316_INTRON_698_1180 intron 31.186786 188.403002 31.186786 158.216216 94.701501 1.976356863 0.049851 201 17 SH11339 11339 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3581 3598 377.889197 821.058807 599.474002 2.777770353 -0.383013 201 18 SH7324 7324 snR66 3' 27.186002 127.884241 77.5351215 1.889498472 -0.065347 201 19 SH6748 6748 snR50 5' 29.129226 163.331512 96.230369 1.983312151 -0.11757 201 20 SH20867 20867 YLR093C spliced 27.157823 147.887758 87.5227905 1.942121156 -0.184985 201 21 SH9407 9407 RUF1 3' 29.112189 139.254753 84.183471 1.925226828 0.008245 201 22 SH6663 6663 snR48 3' 78.400979 274.785203 176.593091 2.246973708 -0.197863 201 23 SH6279 6279 snR42 snR42 176 192 110.762188 305.980696 208.371442 2.318838197 -0.070442 201 24 SH6464 6464 snR45 166-172 + 3' 166 27.144607 122.765967 74.955287 1.874802271 -0.03463 201 25 SH14835 14835 MT tRNA Asp 5' 29.098727 187.768056 29.098727 159.669329 94.384028 1.974898508 -0.101374 201 26 SH19331 19331 YPL218W_16_138697_139408_INTRON_29_167 intron/exon 29.090095 209.172636 29.090095 181.082541 105.086318 2.021546176 -0.214807 201 27 SH3566 3566 Tyr2 3' flank 36.918392 154.005151 95.4617715 1.979829489 0.395249 201 28 SH14672 14672 MT 21S rRNA 21S rRNA4 29.057166 181.022102 29.057166 152.964936 91.011051 1.95909413 -0.06959 201 29 SH15258 15258 MT 9S rRNA 5' 29.031801 188.253358 29.031801 160.221557 94.626679 1.976013598 -0.108949 201 30 SH1518 1518 Leu3 tRNA-intron/exon 61 76 89.95867 283.259206 186.608938 2.270932441 -0.12729 201 31 SH12690 12690 MT ORF 8 (hypothetical) 5' 32.877431 187.085623 32.877431 155.208192 94.0428115 1.973325604 0.170638 201 32 SH1541 1541 Leu3 3' flank 32.851714 185.461507 109.1566105 2.038050042 -0.051654 201 33 SH15306 15306 YAL001C_1_151163_147591_INTRON_71_160 intron 32.844172 190.380708 32.844172 158.536536 95.690354 1.980868161 0.147188 201 34 SH11086 11086 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2316 2331 7090.710027 6517.311492 6804.01076 3.832764992 0.112772 201 35 SH6659 6659 snR48 3' 90.016164 277.178404 183.597284 2.263866252 -0.084721 201 36 SH9214 9214 snR6 / U6 RNA 5' 29.100945 158.669213 93.885079 1.972596576 -0.096126 201 37 SH21726 21726 copy of SH11921 29.220214 125.355421 77.2878175 1.888111044 0.099609 201 38 SH16924 16924 YGR001C_7_498029_497128_INTRON_36_97 5' exon 27.383603 193.282718 27.383603 166.899115 97.141359 1.987404175 -0.263323 201 39 SH18358 18358 YMR033W_13_337787_339276_INTRON_31_116 intron 29.506837 222.264496 29.506837 193.757659 111.632248 2.04778967 -0.256955 201 40 SH6051 6051 snR37 snR37 171 190 33.637022 183.08342 108.360221 2.034869882 -0.001577 201 41 SH14510 14510 MT 21S rRNA 21S rRNA3 29.745912 201.410398 29.745912 172.664486 101.205199 2.005202823 -0.124767 201 42 SH17843 17843 YKR094C_11_618384_617630_INTRON_9_376 intron 29.808734 158.51482 29.808734 129.706086 79.75741 1.901771042 0.1134 201 43 SH2769 2769 Pro6 5' flank 29.822008 156.980738 93.401373 1.97035326 -0.036664 201 44 SH8842 8842 LSR1 / U2 RNA U2 851 866 5345.109719 5240.857199 5292.983459 3.723700537 0.093558 201 45 SH20799 20799 YKL157W spliced 31.70641 204.828902 118.267656 2.072865989 -0.261773 201 46 SH18429 18429 YMR142C_13_551206_550205_INTRON_5_406 intron 35.577179 245.334953 35.577179 210.757774 123.1674765 2.090496044 -0.234822 201 47 SH6570 6570 snR47 5' 151.409125 341.021104 246.2151145 2.39131471 0.051039 201 48 SH15322 15322 YAL003W_1_142172_143158_INTRON_81_446 intron 31.288609 185.752823 31.288609 155.464214 93.3764115 1.97023718 0.07083 201 49 SH7676 7676 snoRNA cluster1 snR78/intergenic 29.174387 182.630568 29.174387 154.456181 91.815284 1.962914982 -0.069094 201 50 SH4305 4305 telomerase RNA telomerase 561 578 29.049287 153.882687 91.465987 1.961259625 -0.074999 201 51 SH1747 1747 Leu7 tRNA 31 47 28.945681 147.304244 88.1249625 1.945098945 -0.047628 201 52 SH13827 13827 MT COB Cytbi2 74.853925 329.281887 74.853925 255.427962 165.1409435 2.217854762 -0.095884 201 53 SH10510 10510 RUF8 RUF8 476 497 28.832168 143.423758 86.127963 1.935144176 -0.035099 201 54 SH6405 6405 snR43 3' 30.778023 168.239382 99.5087025 1.997861063 -0.034626 201 55 SH5269 5269 snR30 snR30 196 213 32.774445 214.462803 123.618624 2.092083905 -0.330829 201 56 SH17948 17948 YLR128W_12_398531_399434_INTRON_4_97 intron 30.917663 211.436179 30.917663 181.518516 106.2180895 2.026198486 -0.103349 201 57 SH12551 12551 MT_15S 5' 31.041749 175.710201 31.041749 145.668452 88.3551005 1.946231625 0.107114 201 58 SH12435 12435 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.182694 181.087628 31.182694 150.904934 91.043814 1.959250443 0.087906 201 59 SH11178 11178 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2776 2789 113.61536 283.307816 198.461588 2.297676462 0.100393 201 60 SH19184 19184 YPL079W_16_406631_407534_INTRON_12_432 intron 25.483978 149.221299 25.483978 124.737321 75.1106495 1.875701517 -0.177437 201 61 SH3590 3590 Val1 5' flank 29.512241 158.136432 93.8243365 1.972315502 -0.064275 201 62 SH8934 8934 snR17a / U3a 5' 28.526121 152.889715 90.707918 1.957645199 -0.107471 201 63 SH5261 5261 snR30 snR30 156 170 32.441877 169.382452 100.9121645 2.003943522 0.056916 201 64 SH3376 3376 Thr4 5' flank 29.344163 146.985555 88.164859 1.945295517 -0.017145 201 65 SH18803 18803 YNL301C_14_64561_63569_INTRON_113_544 intron 35.066364 224.689194 35.066364 190.62283 112.844597 2.05248077 -0.026364 201 66 SH226 226 Arg3 5 'flank - tRNA 5 5' flank 5 30.901422 176.264848 103.583135 2.015289051 -0.074491 201 67 SH14231 14231 MT ATP9 3' 30.646848 223.732459 30.646848 194.085611 112.3662295 2.050635808 -0.211577 201 68 SH20604 20604 YHR077C spliced 41.923508 187.174565 114.5490365 2.058991441 0.136001 201 69 SH6623 6623 snR48 5' 28.253634 148.330979 88.2923065 1.945922862 -0.104006 201 70 SH9443 9443 RUF2 RUF2 56 70 35.636944 161.001359 98.3191515 1.992638122 0.284072 201 71 SH19134 19134 YPL075W_16_412249_415357_INTRON_9_759 intron 31.685118 177.994837 31.685118 147.309719 89.4974185 1.951810509 0.14061 201 72 SH4957 4957 snR9 3' 28.758319 159.111732 93.9350255 1.972827558 -0.122961 201 73 SH2910 2910 Pro8 tRNA 71 83 173.400065 362.566082 267.9830735 2.428107364 0.086851 201 74 SH3622 3622 Val1 3' flank 29.617984 171.615429 100.6167065 2.002670097 -0.126632 201 75 SH21382 21382 Lys3_4 spliced 35.2616 176.311346 105.786473 2.024430138 0.118527 201 76 SH7983 7983 snoRNA cluster 2 snR57 46.624967 243.154121 46.624967 197.529154 122.0770605 2.086634063 0.078731 201 77 SH1557 1557 Leu4 5' flank 26.032506 156.21951 91.126008 1.959642345 -0.316825 201 78 SH15576 15576 YBR084C-A_2_415219_414144_INTRON_3_508 intron 112.331641 427.935592 112.331641 316.603951 214.467796 2.331362089 -0.120372 201 79 SH6535 6535 snR46 snR46 166 183 30.072414 135.986454 83.029434 1.919232077 0.095099 201 80 SH11803 11803 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5901 5916 175.974674 465.742073 320.8583735 2.506313378 -0.340846 201 81 SH16052 16052 YDL191W_4_117665_118518_INTRON_4_494 intron 28.497821 183.936307 28.497821 156.438486 92.4681535 1.965992185 -0.128119 201 82 SH2983 2983 Ser1 3' flank 28.652335 159.791794 94.2220645 1.974152616 -0.134078 201 83 SH9537 9537 RUF3 RUF3 71 90 28.782334 147.674611 88.2284725 1.94560876 -0.061504 201 84 SH887 887 Glu3 5' flank 30.821206 161.887409 96.3543075 1.983871134 0.006798 201 85 SH10274 10274 RUF7 5' 32.823098 164.168826 98.495962 1.993418426 0.11052 201 86 SH21808 21808 copy of SH15283 37.705867 217.379896 127.5428815 2.105656225 -0.269516 201 87 SH19571 19571 AEP2/ATP13 0.6 32.77795 154.275068 93.526509 1.970934724 0.171099 201 88 SH207 207 Arg2 3' flank 29.779233 169.724767 99.752 1.998921612 -0.105227 201 89 SH13990 13990 MT COB intronic 28.712447 169.416913 28.712447 141.704466 85.2084565 1.930482698 -0.034464 201 90 SH8553 8553 snR19 / U1 RNA U1 261 277 34.397892 150.610249 92.5040705 1.966160844 0.285704 201 91 SH20462 20462 YGL183C spliced 55.517817 231.644514 143.5811655 2.157097474 -0.147646 201 92 SH19161 19161 YPL075W_16_412249_415357_INTRON_9_759 intron 28.452326 184.20587 28.452326 156.753544 92.602935 1.966624752 -0.133065 201 93 SH3996 3996 RNase MRP 3' 28.42698 126.619619 77.5232995 1.889432249 0.03469 201 94 SH2533 2533 Pro2 5' flank 28.453956 150.744417 89.5991865 1.952304067 -0.101704 201 95 SH16005 16005 YDL137W_4_216158_217074_INTRON_1_332 intron 85.649828 319.321392 85.649828 234.671564 160.160696 2.204555947 0.19319 201 96 SH2580 2580 Pro2 3' flank 30.622126 163.282213 96.9521695 1.986557532 -0.013732 201 97 SH10190 10190 RUF6 RUF6 796 812 58.217406 197.514434 127.86592 2.106754808 0.227341 201 98 SH15004 15004 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 27.179536 155.790638 27.179536 129.611102 78.395319 1.894290132 -0.076952 201 99 SH8718 8718 LSR1 / U2 RNA U2 231 247 37.369628 158.36293 97.866279 1.990633076 0.369253 201 100 SH13327 13327 MT COX1 COX1-ai5a 31.725346 199.199758 31.725346 168.474412 100.099879 2.000433553 0.020627 201 101 SH1639 1639 Leu5 tRNA-intron/exon 61 77 36.101379 178.259251 107.180315 2.030115029 0.128181 201 102 SH18423 18423 YMR133W_13_536206_537608_INTRON_1243_1358 3' exon 28.25153 181.504007 28.25153 154.252477 91.2520035 1.960242408 -0.134733 201 103 SH8205 8205 snoRNA cluster 3; intergenic/snR51 28.491047 170.9419 28.491047 143.450853 85.97095 1.934351726 -0.060312 201 104 SH5407 5407 snR31 snR31 101 120 28.702745 158.435203 93.568974 1.971131867 -0.123523 202 2 SH6690 6690 snR49 5' 29.622566 149.304199 89.4633825 1.951645314 -0.009974 202 3 SH12502 12502 MT_tRNA Pro 3' 30.561427 204.228092 30.561427 174.666665 102.614046 2.011206812 -0.085919 202 4 SH12327 12327 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.458112 172.840801 30.458112 143.382689 86.9204005 1.939121719 0.080536 202 5 SH15620 15620 YBR181C_2_592732_591670_INTRON_7_358 intron 32.407115 214.631387 32.407115 183.224272 107.8156935 2.032681981 -0.047497 202 6 SH11264 11264 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S/ITS2 3206 3225 30.258893 150.434336 90.3466145 1.955911883 0.028025 202 7 SH13562 13562 MT COX1 Exon 6 32.200268 192.691019 32.200268 161.490751 96.8455095 1.986079488 0.091417 202 8 SH9842 9842 RUF5-1 RUF5-1 16 37 30.077113 167.771264 98.9241885 1.995302496 -0.074859 202 9 SH19671 19671 SIR1 2.4 29.990606 146.39028 88.190443 1.945421524 0.031618 202 10 SH5356 5356 snR30 3' 62.265678 191.069923 126.6678005 2.102666229 0.348896 202 11 SH9983 9983 RUF5-1 RUF5-1 721 743 33.832975 180.298397 107.065686 2.029650304 0.031248 202 12 SH11233 11233 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3051 3069 26931.58495 28401.72361 27666.65428 4.441956643 -0.500198 202 13 SH7125 7125 snR63 snR63 131 147 37.617648 164.128614 100.873131 2.003775501 0.316832 202 14 SH16979 16979 YGR034W_7_555923_556666_INTRON_20_496 intron 29.533614 162.153763 29.533614 133.620149 81.5768815 1.911567099 0.070702 202 15 SH5762 5762 snR35 5' - 12 -4 12 35.402219 175.533251 105.467735 2.023119619 0.130759 202 16 SH135 135 Arg1 51-65 51 65 55.179608 202.13159 128.655599 2.109428691 0.139646 202 17 SH12384 12384 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.243245 227.160438 35.243245 192.917193 114.080219 2.057210346 -0.048861 202 18 SH7554 7554 snR79 3' 36.183339 190.904714 113.5440265 2.055164291 -0.007398 202 19 SH19536 19536 CBP1 1.2 39.118974 176.921785 108.0203795 2.033505699 0.213458 202 20 SH10355 10355 RUF7 RUF7 386 400 45.040502 208.83008 126.935291 2.103582383 -0.068413 202 21 SH12754 12754 MT COX1 COX1ai1 27.280658 166.561473 27.280658 140.280815 83.7807365 1.923144174 -0.134327 202 22 SH4191 4191 telomerase RNA 5' - 8 8 27.290677 165.988729 96.639703 1.985155587 -0.265947 202 23 SH5253 5253 snR30 snR30 116 130 29.274028 164.379565 96.8267965 1.985995564 -0.112461 202 24 SH147 147 Arg1 3' flank 33.233984 208.071005 120.6524945 2.081536305 -0.255081 202 25 SH13522 13522 MT COX1 intronic 33.244476 243.42524 33.244476 211.180764 122.21262 2.087116055 -0.287167 202 26 SH9332 9332 RUF1 RUF1 236 253 35.225377 151.768417 93.496897 1.970797198 0.322359 202 27 SH11590 11590 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4836 4851 35.222569 196.429918 115.8262435 2.063806971 -0.088576 202 28 SH8328 8328 snoRNA cluster4 intergenic 29.288676 166.286273 29.288676 137.997597 83.6431365 1.92243031 0.028042 202 29 SH9088 9088 snR14 / U4 RNA U4 56 75 29.273596 134.405047 81.8393215 1.91296202 0.047514 202 30 SH19897 19897 snR17A spliced 29.254866 152.293669 90.7742675 1.957962753 -0.051955 202 31 SH18914 18914 YOL120C_15_94401_93394_INTRON_113_559 intron/exon 27.268416 147.405185 27.268416 121.136769 74.2025925 1.870419079 -0.014199 202 32 SH18305 18305 YML073C_13_124172_123227_INTRON_16_430 intron 34.151956 243.826326 34.151956 210.67437 122.413163 2.08782812 -0.262885 202 33 SH2845 2845 Pro7 tRNA-exon/intron 31 45 41.067734 175.841587 108.4546605 2.035248219 0.261191 202 34 SH17883 17883 YLR048W_12_242233_243350_INTRON_91_449 intron 96.694001 423.934538 96.694001 328.240537 212.467269 2.327292036 -0.33836 202 35 SH8978 8978 snR17a / U3a U3a 176 194 37.228743 167.853159 102.540951 2.010897341 0.266518 202 36 SH12204 12204 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7906 7921 35.355929 201.765527 118.560728 2.073940857 -0.144272 202 37 SH8817 8817 LSR1 / U2 RNA U2 726 743 32.505821 174.244521 103.375171 2.014416241 0.031844 202 38 SH12472 12472 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 12907.49458 22630.67898 12907.49458 9724.184393 11315.83949 4.053686779 0.251049 202 39 SH15156 15156 MT tRNA Val 5' 27.775126 180.175676 27.775126 153.40055 90.587838 1.957069895 -0.16617 202 40 SH20567 20567 YHR010W spliced 33.92544 149.732279 91.8288595 1.96297919 0.26579 202 41 SH19900 19900 snR17B spliced 34.019544 148.893994 91.456769 1.961215854 0.276672 202 42 SH21706 21706 copy of SH11081 10126.44349 9961.260559 10043.85203 4.001900306 -0.101287 202 43 SH5531 5531 snR33 5' 30.007159 137.964694 83.9859265 1.924206518 0.079269 202 44 SH14576 14576 MT 21S rRNA intronic 33.985538 188.375018 33.985538 155.38948 94.687509 1.976292691 0.231419 202 45 SH20773 20773 YKL006C-A spliced 31.855872 201.711459 116.7836655 2.067382102 -0.23026 202 46 SH13330 13330 MT COX1 COX1-ai5a 29.709497 195.614637 29.709497 166.90514 98.3073185 1.99258585 -0.094169 202 47 SH10594 10594 RUF8 RUF8 896 908 33.542351 202.440544 117.9914475 2.071850529 -0.1888 202 48 SH3383 3383 Thr4 tRNA 1 15 40.313715 171.268479 105.791097 2.024449121 0.30547 202 49 SH21304 21304 YPL218W spliced 41.097764 188.563823 114.8307935 2.060058366 0.107163 202 50 SH2053 2053 Lys4 5' flank 29.118137 146.344666 87.7314015 1.943155067 -0.030024 202 51 SH17115 17115 YHR010W_8_126513_127484_INTRON_32_592 5' exon 30.965535 203.605796 30.965535 173.640261 102.302898 2.009887936 -0.055375 202 52 SH8294 8294 snoRNA cluster4 intergenic 28.932653 170.479426 28.932653 142.546773 85.739713 1.933182025 -0.022992 202 53 SH3210 3210 Thr1 5' flank 32.786864 201.667558 117.227211 2.069028433 -0.196585 202 54 SH1428 1428 Leu2 5' flank 29.862198 175.634923 102.7485605 2.011775746 -0.134803 202 55 SH2839 2839 Pro7 tRNA 1 13 958.038102 1332.685383 1145.361743 3.058942673 0.007243 202 56 SH5159 5159 snR13 5' 32.916329 167.90347 100.4098995 2.001776532 0.092968 202 57 SH18288 18288 YML067C_13_140214_139063_INTRON_32_124 intron/exon 40.902545 236.820866 40.902545 196.918321 118.910433 2.075219961 0.005235 202 58 SH4132 4132 SRP RNA SRP RNA 551 565 52.948361 186.953479 119.95092 2.079003583 0.283357 202 59 SH4562 4562 U3b (snR17b) U3b 366 382 31.329132 199.044609 115.1868705 2.061402979 -0.227774 202 60 SH14224 14224 MT ATP9 ATP9 29.446988 169.868117 29.446988 141.421129 85.4340585 1.931631038 0.020297 202 61 SH13741 13741 MT COB Exon1 29.502628 204.092826 29.502628 175.590198 102.546413 2.010920474 -0.15719 202 62 SH9498 9498 RUF2 3' 35.471753 167.437497 101.454625 2.00627185 0.212788 202 63 SH3796 3796 RNaseP 5' flank 57.311796 221.628105 139.4699505 2.144480647 -0.029513 202 64 SH4991 4991 snR10 5' - 5 -14 5 30.313461 157.574662 93.9440615 1.972869332 -0.005802 202 65 SH21415 21415 Ser4 spliced 35.048952 228.459881 131.7544165 2.119765182 -0.426978 202 66 SH21022 21022 YMR079W spliced 32.844498 189.941705 111.3931015 2.046858296 -0.092196 202 67 SH3862 3862 RNaseP RNaseP 276 288 30.649867 159.308901 94.979384 1.977629349 0.008235 202 68 SH9000 9000 snR17a / U3a U3a 286 303 45.799237 163.074955 104.437096 2.018854787 0.502495 202 69 SH7457 7457 snR71 5' 34.000919 173.058211 103.529565 2.015064389 0.10634 202 70 SH15319 15319 YAL003W_1_142172_143158_INTRON_81_446 intron 35.687998 188.198549 35.687998 153.510551 94.5992745 1.975887806 0.335154 202 71 SH9363 9363 RUF1 RUF1 391 410 29.855881 144.116507 86.986194 1.939450329 0.034628 202 72 SH21006 21006 YML094W spliced 31.633866 172.51485 102.074358 2.008916657 -0.00885 202 73 SH12708 12708 MT ORF 8 (hypothetical) ORF8 27.819027 168.371646 27.819027 141.552619 84.685823 1.927810712 -0.100203 202 74 SH21183 21183 YOL047C spliced 27.795533 171.865776 99.8306545 1.999263918 -0.256092 202 75 SH16481 16481 YER102W_5_362729_363698_INTRON_1_360 intron 33.4262 226.753355 33.4262 194.327155 113.8766775 2.056434788 -0.109683 202 76 SH1983 1983 Lys2 3' flank 35.346739 186.678745 111.012742 2.04537283 0.024805 202 77 SH2867 2867 Pro7 3' flank 29.776818 135.679835 82.7283265 1.917654239 0.076054 202 78 SH15892 15892 YDL082W_4_308423_309387_INTRON_5_369 intron 27.98369 184.15671 27.98369 157.17302 92.578355 1.96650946 -0.169696 202 79 SH10662 10662 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 196 214 126.657483 336.2839 231.4706915 2.364496009 -0.10994 202 80 SH21643 21643 copy of SH8353 51.118163 239.066845 145.092504 2.161644976 -0.277369 202 81 SH16904 16904 YGL232W_7_62074_63001_INTRON_58_115 5' exon 28.365595 216.32522 28.365595 188.959625 108.66261 2.036080132 -0.305217 202 82 SH200 200 Arg2 3' flank 32.348399 181.588187 106.968293 2.029255065 -0.034534 202 83 SH6317 6317 snR42 3' 28.632073 143.379854 86.0059635 1.934528565 -0.049527 202 84 SH4167 4167 SRP RNA 3' 30.66899 167.807389 99.2381895 1.996678832 -0.038648 202 85 SH4339 4339 telomerase RNA telomerase 731 750 34.624464 164.727238 99.675851 1.998589952 0.206947 202 86 SH7396 7396 snR68 3' 32.712807 172.705563 102.709185 2.011609283 0.052723 202 87 SH6825 6825 snR52 snR52 31 48 34.644905 176.897437 105.771171 2.024367312 0.091791 202 88 SH6041 6041 snR37 snR37 121 139 30.712377 165.684319 98.198348 1.992104182 -0.023069 202 89 SH2898 2898 Pro8 tRNA 11 28 40.332858 161.625992 100.979425 2.004232893 0.426248 202 90 SH17211 17211 YHR039C-A_8_187670_187164_INTRON_4_165 intron 30.564481 186.000249 30.564481 156.435768 93.5001245 1.970812189 0.017189 202 91 SH21830 21830 copy of SH16330 32.418234 152.430928 92.424581 1.96578749 0.160397 202 92 SH6826 6826 snR52 snR52 36 55 34.289515 194.205939 114.247727 2.057847568 -0.082771 202 93 SH1979 1979 Lys2 3' flank 32.352468 179.462658 105.907563 2.024926975 -0.014514 202 94 SH6311 6311 snR42 336-351 + 3' 336 67.197525 242.525963 154.861744 2.189944146 -0.085713 202 95 SH20018 20018 YBR089C-A spliced 30.564602 178.817575 104.6910885 2.019909715 -0.109588 202 96 SH4472 4472 U3b (snR17b) 5' 120.110547 296.362338 208.2364425 2.318556736 0.071165 202 97 SH4396 4396 telomerase RNA telomerase 1016 1037 30.930997 152.993681 91.962339 1.963610009 0.059951 202 98 SH4893 4893 snR8 3' 31.185027 156.867914 94.0264705 1.973250134 0.056667 202 99 SH12440 12440 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.447774 209.567642 35.447774 175.119868 105.283821 2.022361638 0.136278 202 100 SH13041 13041 MT COX1 COX1ai2 29.755508 204.070138 29.755508 175.31463 102.535069 2.010872428 -0.139639 202 101 SH5285 5285 snR30 snR30 276 292 30.028611 151.49703 90.7628205 1.957907983 0.006468 202 102 SH10459 10459 RUF8 RUF8 221 238 30.287687 142.975907 86.631797 1.937677323 0.071062 202 103 SH3219 3219 Thr1 5' flank 28.459327 143.735357 86.097342 1.934989744 -0.064203 202 104 SH2593 2593 Pro3 5' flank 49.592829 242.013839 145.803334 2.163767455 -0.32641 203 2 SH3645 3645 Val2 5' flank 28.6827 125.218358 76.950529 1.88621161 0.062331 203 3 SH17067 17067 YGR214W_7_920570_921783_INTRON_91_545 intron 28.620003 152.318223 28.620003 124.69822 76.6591115 1.884563781 0.06128 203 4 SH14102 14102 MT COB Cytbi4 28.557174 164.473116 28.557174 136.915942 82.736558 1.917697449 -0.019095 203 5 SH18947 18947 YOL127W_15_80347_81189_INTRON_14_427 intron 32.622232 237.896985 32.622232 206.274753 119.4484925 2.077180673 -0.249342 203 6 SH13046 13046 MT COX1 COX1ai2 30.491244 173.320823 30.491244 143.829579 87.1604115 1.940319272 0.080271 203 7 SH20033 20033 YBR181C spliced 30.424417 146.546418 88.4854175 1.946871704 0.060558 203 8 SH21108 21108 YNL069C spliced 30.354046 149.227219 89.7906325 1.953231031 0.041067 203 9 SH14694 14694 MT 21S rRNA 3' 45.607862 240.186592 45.607862 195.57873 120.593296 2.081323165 0.087041 203 10 SH21253 21253 YPL075W spliced 29.16963 195.395028 112.282329 2.050311412 -0.286991 203 11 SH5180 5180 snR13 snR13 56 72 28.057024 137.557549 82.8072865 1.918068554 -0.059951 203 12 SH13262 13262 MT COX1 COX1-ai4 29.965402 206.900386 29.965402 177.934984 103.950193 2.0168253 -0.141573 203 13 SH5566 5566 snR33 snR33 116 132 34.867096 158.914133 96.8906145 1.98628171 0.256503 203 14 SH3596 3596 Val1 5' flank 31.711814 149.714816 90.713315 1.957671038 0.129239 203 15 SH7988 7988 snoRNA cluster 2 snR57/intergenic 29.587544 185.035453 29.587544 156.447909 93.0177265 1.96856572 -0.05029 203 16 SH17848 17848 YKR094C_11_618384_617630_INTRON_9_376 intron/exon 27.495087 181.002368 27.495087 154.507281 91.001184 1.959047043 -0.193115 203 17 SH5027 5027 snR10 snR10 166 182 27.415467 115.844865 71.630166 1.855095958 0.034114 203 18 SH6692 6692 snR49 5' - 3 -14 3 29.335881 170.038823 99.687352 1.99864006 -0.135501 203 19 SH13390 13390 MT COX1 intronic 29.304515 216.4211 29.304515 188.116585 108.71055 2.036271693 -0.239798 203 20 SH10007 10007 RUF5-1 3' 29.298082 164.673963 96.9860225 1.986709149 -0.112206 203 21 SH8684 8684 LSR1 / U2 RNA U2 61 77 29.311728 188.162451 108.7370895 2.036377704 -0.239585 203 22 SH15335 15335 YAL030W_1_87288_87754_INTRON_103_215 exon/intron 31.316147 209.011266 31.316147 178.695119 105.005633 2.021212597 -0.063482 203 23 SH9913 9913 RUF5-1 RUF5-1 371 392 27.396654 126.269414 76.833034 1.885547983 -0.038941 203 24 SH15255 15255 MT 9S rRNA 5' 27.431188 171.744372 27.431188 145.313184 86.372186 1.936373911 -0.150205 203 25 SH18395 18395 YMR125W_13_517538_520445_INTRON_26_347 exon/intron 501.234295 1410.708726 501.234295 910.474431 705.854363 2.848715104 -0.199302 203 26 SH3230 3230 Thr1 tRNA 6 22 31.459507 165.063884 98.2616955 1.992384254 0.025675 203 27 SH9817 9817 RUF4 3' 32.474903 166.534729 99.504816 1.997844101 0.076045 203 28 SH14160 14160 MT COB intronic 35.472555 222.509611 35.472555 188.037056 111.7548055 2.048266207 0.011529 203 29 SH13647 13647 MT ATP6 ATP6 31.496969 182.510285 31.496969 152.013316 91.7551425 1.962630414 0.102789 203 30 SH18802 18802 YNL301C_14_64561_63569_INTRON_113_544 intron 34.480033 239.574092 34.480033 206.094059 120.287046 2.08021886 -0.208248 203 31 SH14442 14442 MT 21S rRNA 21S rRNA3 27.518247 151.132003 27.518247 124.613756 76.0660015 1.881190588 -0.018895 203 32 SH10079 10079 RUF6 RUF6 241 257 29.508299 147.582182 88.5452405 1.947165222 -0.008597 203 33 SH6880 6880 snR56 snR56 31 48 35.497488 147.508287 91.5028875 1.961434799 0.365671 203 34 SH14898 14898 MT tRNA Ile tRNA 35.541117 202.963266 35.541117 168.422149 101.981633 2.008521962 0.205234 203 35 SH11081 11081 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2291 2307 9322.860931 9972.916501 9647.888716 3.984432285 -0.210129 203 36 SH9638 9638 RUF4 5' 33.711366 178.721926 106.216646 2.026192584 0.041754 203 37 SH1674 1674 Leu6 5' flank 31.819649 153.321435 92.570542 1.966472807 0.117 203 38 SH18882 18882 YOL047C_15_242745_241612_INTRON_244_306 5' exon 33.960256 220.238055 33.960256 187.277799 110.6190275 2.043829836 -0.028343 203 39 SH10687 10687 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 321 338 36.113569 188.604179 112.358874 2.050607378 0.017641 203 40 SH21154 21154 YNL265C spliced 30.129924 160.348218 95.239071 1.97881515 -0.03254 203 41 SH18316 18316 YML085C_13_99400_97941_INTRON_26_141 5' exon 32.225933 229.58451 32.225933 198.358577 115.292255 2.061800134 -0.188139 203 42 SH17296 17296 YHR141C_8_382752_381991_INTRON_5_445 intron 28.174725 217.919264 28.174725 190.744539 109.459632 2.039253984 -0.32739 203 43 SH20471 20471 YGL187C spliced 114.801806 309.783693 212.2927495 2.326935162 -0.057562 203 44 SH12662 12662 MT_15S MT_15S 45.340339 261.552427 45.340339 217.212088 131.2762135 2.118186042 -0.152738 203 45 SH1819 1819 Leu8 3' flank 29.972915 138.762851 84.367883 1.926177152 0.072368 203 46 SH7186 7186 snR64 5' - 12 -4 12 56.029443 230.245299 143.137371 2.155753036 -0.127801 203 47 SH20280 20280 YDR450W spliced 31.64232 132.235999 81.9391595 1.913491505 0.224067 203 48 SH2778 2778 Pro6 5' flank 29.469131 168.529912 98.9995215 1.995633096 -0.118875 203 49 SH17506 17506 YJL136C_10_156971_156248_INTRON_25_484 intron 3899.053082 9680.251251 3899.053082 5782.198169 4840.625626 3.684901496 -0.471571 203 50 SH13736 13736 MT COB Exon1 29.159834 182.752079 29.159834 154.592245 91.8760395 1.963202266 -0.070843 203 51 SH3045 3045 Ser3 5' flank 29.042684 140.498775 84.7707295 1.928245921 -0.00372 203 52 SH12677 12677 MT tRNA Trp 5' / tRNA 28.958281 197.923295 28.958281 169.965014 99.4616475 1.997655649 -0.162035 203 53 SH4583 4583 U3b (snR17b) 3' 26.96364 127.220034 77.091837 1.887008394 -0.077922 203 54 SH143 143 Arg1 3' flank 30.851965 202.673083 116.762524 2.067303474 -0.276645 203 55 SH3822 3822 RNaseP RNaseP 76 93 100.472171 285.746652 193.1094115 2.28580344 -0.037088 203 56 SH20195 20195 YDR005C spliced 29.985813 189.370672 109.6782425 2.040120483 -0.203585 203 57 SH1117 1117 Gly4 61-72 + 3' flank 61 30.088839 166.607184 98.3480115 1.992765583 -0.067056 203 58 SH1894 1894 Lys1 5' flank 33.162794 191.860084 112.511439 2.051196679 -0.0976 203 59 SH19894 19894 snR17A spliced 29.333472 152.23422 90.783846 1.958008577 -0.04607 203 60 SH12510 12510 MT_ORF6 + ORF7 (hypothetical) 5' 27.441106 151.143604 27.441106 124.702498 76.071802 1.881223704 -0.025258 203 61 SH7020 7020 snR60 3' 29.472086 159.103712 94.287899 1.974455959 -0.072041 203 62 SH8539 8539 snR19 / U1 RNA U1 191 210 27.485519 154.188978 90.8372485 1.958263971 -0.192241 203 63 SH1556 1556 Leu4 5' flank 27.428914 142.805716 85.117315 1.930017915 -0.136815 203 64 SH3118 3118 Ser4 5' flank - tRNA10 10 134.91933 283.009502 208.964416 2.320072338 0.275439 203 65 SH17943 17943 YLR128W_12_398531_399434_INTRON_4_97 5' exon 29.123503 179.456433 29.123503 151.33293 90.2282165 1.955342373 -0.056169 203 66 SH8450 8450 snoRNA cluster 5 snR128 40.629475 210.371753 40.629475 170.742278 105.6858765 2.024016954 0.317692 203 67 SH21166 21166 YNL302C spliced 30.63973 147.528466 89.084098 1.949800187 0.069783 203 68 SH9065 9065 snR14 / U4 RNA 5' 28.493522 129.519719 79.0066205 1.897663485 0.020731 203 69 SH11116 11116 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2466 2483 34.024394 168.662093 101.3432435 2.0057948 0.150281 203 70 SH13655 13655 MT ATP6 ATP6 28.140297 178.519164 28.140297 151.378867 89.759582 1.953080821 -0.128322 203 71 SH13039 13039 MT COX1 COX1ai2 28.015571 176.574685 28.015571 149.559114 88.7873425 1.948351057 -0.128253 203 72 SH7013 7013 snR60 3' 420.609149 763.405393 592.007271 2.772327041 -0.130264 203 73 SH11051 11051 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2141 2158 237.337847 506.739711 372.038779 2.57058821 -0.141891 203 74 SH20470 20470 YGL187C spliced 78.788459 243.210193 160.999326 2.206824058 0.047503 203 75 SH9678 9678 RUF4 RUF4 166 185 29.70648 186.763182 108.234831 2.034367043 -0.206994 203 76 SH5471 5471 snR32 snR32 16 32 29.719733 160.634209 95.176971 1.978531879 -0.062431 203 77 SH5086 5086 snR11 snR11 31 46 37.280766 156.878815 97.0797905 1.98712883 0.382289 203 78 SH18015 18015 YLR287C-A_12_713158_712537_INTRON_4_433 3' exon 29.81376 182.76648 29.81376 153.95272 91.88324 1.963236301 -0.021459 203 79 SH15162 15162 MT tRNA Val tRNA 28.009598 173.220854 28.009598 146.211256 87.110427 1.940070143 -0.111059 203 80 SH20956 20956 YML024W spliced 79.553268 254.543129 167.0481985 2.222841796 -0.034448 203 81 SH13 13 Ala1 5' flank 30.127327 178.644354 104.3858405 2.018641592 -0.135541 203 82 SH2073 2073 Lys4 tRNA-exon/intron 31 48 30.260295 136.250638 83.2554665 1.920412759 0.106703 203 83 SH8248 8248 snoRNA cluster4 5' 26.555397 141.336303 26.555397 115.780906 71.1681515 1.852285686 -0.030776 203 84 SH17447 17447 YIL148W_9_68708_69528_INTRON_9_442 exon/intron 32.433682 220.746904 32.433682 189.313222 110.873452 2.044827569 -0.101682 203 85 SH20661 20661 YIL052C spliced 139.731644 362.789206 251.260425 2.40012409 -0.146846 203 86 SH2822 2822 Pro7 5' flank 32.593523 164.354213 98.473868 1.993320997 0.096252 203 87 SH14860 14860 MT tRNA Ser2; tRNA Arg2 tRNA Ser 30.682352 182.293273 30.682352 152.610921 91.6466365 1.962116531 0.04523 203 88 SH1046 1046 Gly3 5' flank 26.804956 154.501712 90.653334 1.957383781 -0.246624 203 89 SH6613 6613 snR47 3' 28.712401 137.379732 83.0460665 1.919319067 -0.010313 203 90 SH7850 7850 snoRNA cluster1 snR74/intergenic 28.673486 185.166677 28.673486 157.493191 93.0833385 1.968871951 -0.120809 203 91 SH13172 13172 MT COX1 intronic/exon4 28.636369 186.099527 28.636369 158.463158 93.5497635 1.971042694 -0.128471 203 92 SH9129 9129 snR7 U5 RNA 5' 30.543225 181.718904 106.1310645 2.02584252 -0.127248 203 93 SH1498 1498 Leu3 5' flank 28.623145 159.292382 93.9577635 1.972932671 -0.133658 203 94 SH7695 7695 snoRNA cluster1 intergenic 35.438654 191.996821 35.438654 157.558167 96.4984105 1.98452016 0.295605 203 95 SH17437 17437 YIL133C_9_99416_98527_INTRON_32_321 intron 138.29797 508.959741 138.29797 371.661771 254.9798705 2.406505896 -0.201991 203 96 SH17170 17170 YHR016C_8_138446_136872_INTRON_48_215 3' exon 28.910579 172.211923 28.910579 144.301344 86.6059615 1.937547788 -0.034133 203 97 SH12850 12850 MT COX1 COX1ai1 29.098106 163.729818 29.098106 135.631712 82.364909 1.915742223 0.02777 203 98 SH1646 1646 Leu5 tRNA 96 113 61.069682 192.677392 126.873537 2.103371047 0.316363 203 99 SH2478 2478 Phe5 3' flank 31.556217 186.329501 108.942859 2.037198768 -0.10773 203 100 SH2690 2690 Pro4 3' flank 33.83772 170.581321 102.2095205 2.009491351 0.124903 203 101 SH18269 18269 YML056C_13_164176_162194_INTRON_461_868 intron 28.031366 168.653011 28.031366 141.621645 84.8265055 1.928531576 -0.084568 203 102 SH17425 17425 YIL111W_9_155219_155762_INTRON_2_89 3' exon 84.971627 347.946236 84.971627 263.974609 174.473118 2.241728522 -0.044676 203 103 SH18519 18519 YMR225C_13_721402_720959_INTRON_59_205 5' exon 28.436582 183.707985 28.436582 156.271403 92.3539925 1.965455675 -0.131718 203 104 SH454 454 Asp1 3' flank 30.683995 181.334493 106.009244 2.025343737 -0.1165 204 2 SH15511 15511 YBR048W_2_332790_333771_INTRON_46_556 intron 30.868665 226.096716 30.868665 196.228051 113.548358 2.055180858 -0.221463 204 3 SH5940 5940 snR36 snR36 156 174 30.826574 185.04375 107.935162 2.033162948 -0.128407 204 4 SH9001 9001 snR17a / U3a U3a 291 306 41.220284 186.429324 113.824804 2.056236911 0.134966 204 5 SH8624 8624 snR19 / U1 RNA U1 616 632 45.328667 172.968562 109.1486145 2.038018227 0.363247 204 6 SH21721 21721 copy of SH11711 18737.93708 15157.86938 16947.90323 4.229115976 0.027466 204 7 SH4035 4035 SRP RNA SRP RNA 66 82 30.677456 179.531858 105.104657 2.021621959 -0.106748 204 8 SH8243 8243 snoRNA cluster4 5' 26.499799 153.367526 26.499799 127.867727 77.183763 1.887525948 -0.117818 204 9 SH14712 14712 MT tRNA cys; tRNA his 5' 30.552014 180.694625 30.552014 151.142611 90.8473125 1.958312084 0.044227 204 10 SH7738 7738 snoRNA cluster1 intergenic 30.455662 208.7878 30.455662 179.332138 104.8939 2.020750233 -0.119182 204 11 SH12279 12279 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.376885 218.125444 32.376885 186.748559 109.562722 2.039662813 -0.080765 204 12 SH6318 6318 snR42 3' 28.154032 146.359058 87.256545 1.940798013 -0.101014 204 13 SH9439 9439 RUF2 RUF2 36 54 30.022333 152.690091 91.356212 1.960738084 -0.00032 204 14 SH4785 4785 snR5 snR5 96 115 30.856407 141.73205 86.2942285 1.93598175 0.116878 204 15 SH15440 15440 YBL072C_2_89435_88518_INTRON_1_308 3' exon 35.688955 198.03083 35.688955 163.341875 99.515415 1.997890358 0.26189 204 16 SH6468 6468 snR45 3' 27.547184 138.154248 82.850716 1.918296266 -0.101947 204 17 SH17520 17520 YJL136C_10_156971_156248_INTRON_25_484 intron 31.397912 216.628438 31.397912 186.230526 108.814219 2.036685649 -0.112858 204 18 SH6647 6647 snR48 snR48 61 78 27.355861 155.790972 91.5734165 1.961769418 -0.210254 204 19 SH11894 11894 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6356 6373 3533.723433 2060.902552 2797.312993 3.446741062 1.03168 204 20 SH835 835 Glu2 5' flank 27.303886 151.002009 89.1529475 1.950135706 -0.189928 204 21 SH4602 4602 snR3 5' 28.311063 152.155987 90.233525 1.955367924 -0.119571 204 22 SH17182 17182 YHR021C_8_148660_147862_INTRON_4_553 intron 31.321647 220.283974 31.321647 189.962327 110.641987 2.043919967 -0.149251 204 23 SH1366 1366 Leu1 5' flank 31.387679 181.324873 106.356276 2.026763122 -0.07406 204 24 SH1228 1228 Ile1 3' flank 29.474808 152.84266 91.158734 1.959798285 -0.039326 204 25 SH8691 8691 LSR1 / U2 RNA U2 96 115 29.542883 143.070177 86.30653 1.936043656 0.01811 204 26 SH19914 19914 YAL003W spliced 29.60467 149.924117 89.7643935 1.953104101 -0.014585 204 27 SH20434 20434 YGL076C spliced 35.655155 183.603292 109.6292235 2.039926338 0.063438 204 28 SH6831 6831 snR52 snR52 61 80 37.708216 170.049089 103.8786525 2.016526307 0.259914 204 29 SH18835 18835 YNL302C_14_62942_61957_INTRON_21_571 intron 35.738602 233.09799 35.738602 198.359388 117.048995 2.068367689 -0.099575 204 30 SH6232 6232 snR42 5' 32.753257 173.075546 102.9144015 2.012476153 0.052859 204 31 SH11541 11541 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4591 4608 20134.005 22921.74207 21527.87353 4.333001133 -0.536855 204 32 SH6508 6508 snR46 snR46 31 47 33.795247 162.907949 98.351598 1.992781421 0.172916 204 33 SH11978 11978 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6776 6792 2332.729151 1660.944479 1996.836815 3.300342575 0.821196 204 34 SH3511 3511 Tyr1 3' flank 27.837127 130.684341 79.260734 1.89905809 -0.03462 204 35 SH14478 14478 MT 21S rRNA 21S rRNA3 300.43415 898.962378 300.43415 599.528228 449.981189 2.653194359 -0.142523 204 36 SH9348 9348 RUF1 RUF1 316 335 34.030224 179.821414 106.925819 2.029082585 0.042682 204 37 SH6515 6515 snR46 snR46 66 84 34.135886 174.410316 104.273101 2.018172289 0.097953 204 38 SH7861 7861 snoRNA cluster1 intergenic 30.178365 174.210451 30.178365 145.032086 87.6052255 1.942530012 0.052121 204 39 SH16557 16557 YER133W_5_432491_433954_INTRON_178_702 intron 30.271386 211.239471 30.271386 181.968085 106.1197355 2.025796159 -0.145352 204 40 SH8181 8181 snoRNA cluster 3; snR70 81.770302 343.488531 81.770302 262.718229 172.2442655 2.236144772 -0.070909 204 41 SH3573 3573 Tyr2 3' flank 36.535321 167.500214 102.0177675 2.008675815 0.247546 204 42 SH12836 12836 MT COX1 COX1ai1 30.386331 173.507115 30.386331 144.120784 87.2535575 1.940783143 0.07148 204 43 SH134 134 Arg1 46-61 46 61 34.426671 177.4157 105.9211855 2.024982833 0.079285 204 44 SH7105 7105 snR63 snR63 31 48 38.394941 205.273974 121.8344575 2.085770134 -0.127701 204 45 SH3694 3694 Val3 5' flank 28.06455 150.668509 89.3665295 1.951174893 -0.130334 204 46 SH300 300 Arg4 3' flank 29.913318 176.451966 103.182642 2.013606644 -0.136321 204 47 SH6602 6602 snR47 3' 33.724368 157.414731 95.5695495 1.980319539 0.203842 204 48 SH7416 7416 snR69 5' - 2 -19 2 31.508659 136.417363 83.963011 1.924088004 0.190891 204 49 SH761 761 Gln4 3' flank 33.287901 147.123956 90.2059285 1.955235081 0.244042 204 50 SH15055 15055 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.204796 173.200817 27.204796 146.996021 87.1004085 1.940020192 -0.176632 204 51 SH7494 7494 snR71 86-90 + 3' 86 30.993199 178.653141 104.82317 2.020457289 -0.082621 204 52 SH10120 10120 RUF6 RUF6 446 462 28.939411 159.954945 94.447178 1.975188986 -0.114215 204 53 SH10654 10654 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 156 174 344.242398 599.53655 471.889474 2.67384029 0.022778 204 54 SH20541 20541 YGR214W spliced 30.814631 197.792206 114.3034185 2.058059219 -0.236959 204 55 SH4998 4998 snR10 snR10 21 37 36.696711 213.377487 125.037099 2.097038889 -0.243329 204 56 SH5354 5354 snR30 3' 28.965599 144.165854 86.5657265 1.937345978 -0.029397 204 57 SH21680 21680 copy of SH10030 32.982413 158.916236 95.9493245 1.982041922 0.15261 204 58 SH13620 13620 MT ATP6 ATP6 27.210693 182.282323 27.210693 156.07163 91.6411615 1.962090585 -0.222863 204 59 SH11486 11486 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4316 4332 616.835814 394.34201 505.588912 2.703797541 1.432639 204 60 SH17165 17165 YHR016C_8_138446_136872_INTRON_48_215 intron 55.1897 267.139977 55.1897 212.950277 134.0699885 2.127331572 0.026796 204 61 SH6572 6572 snR47 5' 52.286308 252.253173 152.2697405 2.182613608 -0.374398 204 62 SH15733 15733 YBR230C_2_680008_679507_INTRON_12_108 intron 31.40039 186.951217 31.40039 156.550827 93.9756085 1.973015146 0.072589 204 63 SH11337 11337 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3571 3584 29.358899 163.447144 96.4030215 1.984090646 -0.101845 204 64 SH4739 4739 snR4 3' 33.186696 174.059686 103.623191 2.015456962 0.067567 204 65 SH15625 15625 YBR181C_2_592732_591670_INTRON_7_358 intron 29.085228 203.70986 29.085228 175.624632 102.35493 2.010108766 -0.184026 204 66 SH18515 18515 YMR201C_13_667043_665844_INTRON_28_111 intron 28.894872 188.348643 28.894872 160.453771 94.6743215 1.976232201 -0.119934 204 67 SH2351 2351 Phe3 81-91 + 3' flank 81 28.691957 155.53219 92.1120735 1.964316559 -0.109323 204 68 SH15617 15617 YBR181C_2_592732_591670_INTRON_7_358 intron 30.414088 215.08442 30.414088 185.670332 108.04221 2.033593459 -0.157024 204 69 SH5184 5184 snR13 snR13 76 92 78.196496 262.414274 170.305385 2.23122838 -0.110043 204 70 SH54 54 Ala2 5' flank 30.067085 147.993651 89.030368 1.949538169 0.028079 204 71 SH13794 13794 MT COB intronic 29.944086 174.952004 29.944086 146.007918 87.976002 1.944364222 0.030515 204 72 SH18141 18141 YLR406C_12_931752_931062_INTRON_58_406 intron 39.292853 233.335501 39.292853 195.042648 117.1677505 2.068808092 0.003011 204 73 SH10170 10170 RUF6 RUF6 696 708 29.790873 162.106909 95.948891 1.982039959 -0.064862 204 74 SH12022 12022 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6996 7014 36.331242 176.651522 106.491382 2.027314463 0.151073 204 75 SH13242 13242 MT COX1 COX1-ai4 28.785541 179.080388 28.785541 151.294847 90.040194 1.954436422 -0.080188 204 76 SH7819 7819 snoRNA cluster1 intergenic 29.713706 188.668402 29.713706 159.954696 94.834201 1.97696499 -0.059418 204 77 SH19283 19283 YPL143W_16_282121_282969_INTRON_20_544 intron 25.968694 150.576369 25.968694 125.607675 75.7881845 1.879601504 -0.144614 204 78 SH5476 5476 snR32 snR32 41 60 29.746071 149.422666 89.5843685 1.952232237 -0.001982 204 79 SH14565 14565 MT 21S rRNA 21S rRNA3 44.882641 234.780937 44.882641 190.898296 117.8904685 2.071478694 0.131916 204 80 SH7268 7268 snR65 3' 31.757845 153.264059 92.510952 1.96619315 0.113269 204 81 SH11500 11500 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4386 4401 39.445843 167.615496 103.5306695 2.015069022 0.337028 204 82 SH17450 17450 YIL148W_9_68708_69528_INTRON_9_442 intron 35.790744 224.709033 35.790744 189.918289 112.8545165 2.052518944 -0.003834 204 83 SH1451 1451 Leu2 tRNA-exon/intron 26 42 34.02933 198.813039 116.4211845 2.066032014 -0.139223 204 84 SH5723 5723 snR34 536-550 + 3' 536 32.25102 176.903692 104.577356 2.019437657 0.001745 204 85 SH9527 9527 RUF3 RUF3 21 37 36.21773 174.679102 105.448416 2.02304006 0.166272 204 86 SH4156 4156 SRP RNA 671-675 + 3' 671 32.46295 172.338777 102.4008635 2.010303619 0.04055 204 87 SH10281 10281 RUF7 RUF7 16 33 34.463233 187.871066 111.1671495 2.04597647 -0.016068 204 88 SH7862 7862 snoRNA cluster1 intergenic 30.633022 190.056068 30.633022 160.423046 95.528034 1.98013084 0.001449 204 89 SH16112 16112 YDR064W_4_579453_580447_INTRON_22_560 intron 34.519833 194.003021 34.519833 160.483188 97.5015105 1.989011344 0.227809 204 90 SH968 968 Gly1 3' flank 34.52074 154.547226 94.533983 1.975587956 0.266151 204 91 SH8344 8344 snoRNA cluster4 snR53 34.519721 195.336432 34.519721 161.816711 98.168216 1.991970899 0.219395 204 92 SH2912 2912 Pro8 tRNA 81 95 35.500764 171.575031 103.5378975 2.015099342 0.172576 204 93 SH6818 6818 snR52 5' - 14 -4 14 42.340608 183.558298 112.949453 2.052884132 0.186526 204 94 SH13301 13301 MT COX1 COX1-ai5a 30.760879 204.814745 30.760879 175.053866 102.9073725 2.01244649 -0.076008 204 95 SH15737 15737 YCR028C-A_3_173432_172942_INTRON_243_325 5' exon 32.821057 203.438879 32.821057 171.617822 102.2194395 2.009533495 0.065318 204 96 SH16763 16763 YGL087C_7_346902_346404_INTRON_12_96 intron/exon 32.98298 216.606671 32.98298 184.623691 108.8033355 2.036642209 -0.039236 204 97 SH2679 2679 Pro4 tRNA-intron/exon 61 75 822.87692 1268.321389 1045.599155 3.019365223 -0.108777 204 98 SH20806 20806 YKL180W spliced 33.417897 175.200704 104.3093005 2.018323033 0.064858 204 99 SH21122 21122 YNL112W spliced 31.667047 192.798588 112.2328175 2.050119866 -0.161122 204 100 SH3777 3777 Val4 3' flank 33.924792 174.916494 104.420643 2.018786363 0.085632 204 101 SH19174 19174 YPL079W_16_406631_407534_INTRON_12_432 intron 28.075768 170.767342 28.075768 143.691574 85.883671 1.9339106 -0.092543 204 102 SH2224 2224 Phe1 5' flank - tRNA11 11 36.460465 180.588575 108.52452 2.035527874 0.118131 204 103 SH3003 3003 Ser2 5' flank 30.489409 192.244751 111.36708 2.046756833 -0.201666 204 104 SH21058 21058 YMR194W spliced 32.727554 203.912602 118.320078 2.073058447 -0.221978 205 2 SH19230 19230 YPL090C_16_378390_377286_INTRON_7_400 intron 28.840193 161.967463 28.840193 134.12727 81.4837315 1.911070909 0.017712 205 3 SH1651 1651 Leu5 3' flank 28.83586 149.188055 89.0119575 1.949448352 -0.065537 205 4 SH11145 11145 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2611 2629 4169.409023 1378.128255 2773.768639 3.443070234 1.880626 205 5 SH6751 6751 snR50 5' 30.923993 192.844501 111.884247 2.048768943 -0.189967 205 6 SH375 375 Asn1 5' flank 33.00578 158.916303 95.9610415 1.982094953 0.153933 205 7 SH14956 14956 MT tRNA Met 3' 28.819245 179.003814 28.819245 151.184569 90.001907 1.954251712 -0.077169 205 8 SH2047 2047 Lys4 5' flank 28.784566 136.35139 82.567978 1.916811649 0.000829 205 9 SH3987 3987 RNase MRP 3' 28.721318 152.062852 90.392085 1.956130404 -0.088925 205 10 SH15505 15505 YBR048W_2_332790_333771_INTRON_46_556 intron 30.690506 215.197682 30.690506 185.507176 108.098841 2.033821038 -0.139218 205 11 SH21232 21232 YOR293W spliced 30.547034 171.558927 101.0529805 2.004549127 -0.06856 205 12 SH5368 5368 snR31 5' 28.323817 155.321918 91.8228675 1.962950851 -0.135027 205 13 SH9112 9112 snR14 / U4 RNA 3' 50.543195 190.944914 120.7440545 2.081865755 0.206284 205 14 SH2483 2483 Pro1 5' flank 29.948513 181.799433 105.873973 2.024789211 -0.164456 205 15 SH8606 8606 snR19 / U1 RNA U1 526 543 27.733341 141.443986 84.5886635 1.927312163 -0.106102 205 16 SH6293 6293 snR42 snR42 246 260 71.56029 239.146555 155.3534225 2.191320825 -0.003517 205 17 SH16313 16313 YDR471W_4_1401759_1402553_INTRON_32_415 5' exon 31.364238 188.089698 31.364238 157.72546 94.544849 1.975637873 0.064142 205 18 SH11177 11177 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2771 2786 55.9915 209.650839 132.8211695 2.1232673 0.070947 205 19 SH19774 19774 Negative Control 29.204721 184.987332 107.0960265 2.029773358 -0.229131 205 20 SH7082 7082 snR63 5' 29.19006 146.232913 87.7114865 1.943056471 -0.024233 205 21 SH13446 13446 MT COX1 intronic 31.18986 233.245774 31.18986 203.055914 117.122887 2.068641769 -0.26678 205 22 SH17416 17416 YIL106W_9_166412_167441_INTRON_21_105 3' exon 29.287081 180.73323 29.287081 152.446149 90.866615 1.95840435 -0.050482 205 23 SH10982 10982 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1796 1816 33.340254 147.788535 90.5643945 1.956957488 0.243653 205 24 SH4435 4435 telomerase RNA telomerase 1211 1228 33.459607 154.494009 93.976808 1.97302069 0.208136 205 25 SH1795 1795 Leu8 tRNA 1 13 20753.15283 30189.56329 25471.35806 4.406052101 -0.935181 205 26 SH20575 20575 YHR012W spliced 31.695064 161.624435 96.6597495 1.985245665 0.061014 205 27 SH11529 11529 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4531 4549 11141.74522 5211.608649 8176.676936 3.912576839 1.05335 205 28 SH249 249 Arg3 3' flank 29.857617 187.008828 108.4332225 2.035162365 -0.198842 205 29 SH14091 14091 MT COB Cytbi4 29.91565 183.504168 29.91565 154.588518 92.252084 1.964976186 -0.017718 205 30 SH5340 5340 snR30 snR30 551 567 33.999449 187.807016 110.9032325 2.044944205 -0.031723 205 31 SH2616 2616 Pro3 tRNA-exon/intron 31 45 44.171812 175.112064 109.641938 2.039976703 0.319586 205 32 SH13997 13997 MT COB intronic 30.026617 185.480624 30.026617 156.454007 93.240312 1.969603718 -0.019751 205 33 SH18073 18073 YLR344W_12_819312_820142_INTRON_20_466 intron 131.422969 434.970702 131.422969 304.547733 217.985351 2.338427309 0.111775 205 34 SH16738 16738 YGL076C_7_365994_364333_INTRON_565_1032 intron 30.107333 177.892399 30.107333 148.785066 89.4461995 1.951561892 0.026535 205 35 SH7211 7211 snR64 3' 28.133795 144.76479 86.4492925 1.936761443 -0.093993 205 36 SH11416 11416 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3966 3983 100.905818 258.869181 179.8874995 2.255000985 0.156112 205 37 SH20552 20552 YGR225W spliced 30.320727 143.604151 86.962439 1.939331712 0.069903 205 38 SH20826 20826 YKR094C spliced 35.532613 186.846635 111.189624 2.046064262 0.026558 205 39 SH15390 15390 YBL040C_2_142830_142074_INTRON_23_119 intron 32.537928 197.510091 32.537928 165.972163 99.2550455 1.996752593 0.083108 205 40 SH6228 6228 snR42 5' 30.540924 150.775386 90.658155 1.957406876 0.045444 205 41 SH21510 21510 copy of SH2855 42.947958 181.698508 112.323233 2.050469595 0.218346 205 42 SH8727 8727 LSR1 / U2 RNA U2 276 293 29.521652 152.18541 90.853531 1.958341811 -0.03254 205 43 SH447 447 Asp1 tRNA 56 68 30.484572 167.37761 98.931091 1.995332798 -0.047317 205 44 SH6342 6342 snR43 5' 28.321664 157.437035 92.8793495 1.967919165 -0.146141 205 45 SH10545 10545 RUF8 RUF8 651 673 26.135553 141.874102 84.0048275 1.924304244 -0.232427 205 46 SH12409 12409 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.001287 192.073601 30.001287 163.072314 96.5368005 1.984692901 -0.055066 205 47 SH3477 3477 Tyr1 5' flank 35.804414 180.397465 108.1009395 2.033829468 0.098166 205 48 SH15343 15343 YBL018C_2_186436_185960_INTRON_48_122 5' exon 766.454753 1818.532985 766.454753 1053.078232 909.7664925 2.958929937 0.100193 205 49 SH11692 11692 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5346 5363 361.386914 532.5224 446.954657 2.650263467 0.279837 205 50 SH18556 18556 YMR292W_13_854795_855293_INTRON_23_104 5' exon 33.081591 196.624521 33.081591 164.54293 98.8122605 1.994810835 0.122871 205 51 SH16626 16626 YFL039C_6_54695_53260_INTRON_11_318 intron 28.99557 175.231971 28.99557 147.236401 88.1159855 1.945054703 -0.043642 205 52 SH12001 12001 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6891 6908 44.483727 190.557635 117.520681 2.070114299 0.13064 205 53 SH12493 12493 MT_tRNA Pro 5' 26.869195 149.767853 26.869195 123.898658 75.3839265 1.877278755 -0.063215 205 54 SH3226 3226 Thr1 5' flank - tRNA2 2 34.611074 218.906746 126.75891 2.102978496 -0.336921 205 55 SH12221 12221 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.752661 219.934203 30.752661 190.181542 110.4671015 2.043232959 -0.173159 205 56 SH20761 20761 YJR145C spliced 253.560773 476.31703 364.9389015 2.56222016 0.041752 205 57 SH11478 11478 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4276 4291 911.286982 1042.661694 976.974338 2.989883156 0.336604 205 58 SH16013 16013 YDL137W_4_216158_217074_INTRON_1_332 intron 27.13399 163.386982 27.13399 137.252992 82.193491 1.914837427 -0.127879 205 59 SH20194 20194 YDR005C spliced 29.207584 194.213232 111.710408 2.048093638 -0.278396 205 60 SH14577 14577 MT 21S rRNA intronic 29.299466 194.12981 29.299466 165.830344 97.564905 1.989293626 -0.117777 205 61 SH12817 12817 MT COX1 COX1ai1 29.352322 214.844125 29.352322 186.491803 107.9220625 2.033110237 -0.227937 205 62 SH11310 11310 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2/25S 3436 3454 31.332624 178.233108 104.782866 2.020290273 -0.059868 205 63 SH3730 3730 Val3 3' flank 29.301531 174.457305 101.879418 2.008086455 -0.1634 205 64 SH4015 4015 SRP RNA 5' 29.195859 153.048558 91.1222085 1.959624237 -0.060151 205 65 SH2023 2023 Lys3 tRNA 61 75 110.539536 296.64896 203.594248 2.308765504 -0.0139 205 66 SH8658 8658 LSR1 / U2 RNA 5' 28.870066 146.254783 87.5624245 1.942317778 -0.047565 205 67 SH3411 3411 Thr4 3' flank 29.648098 174.07645 101.862274 2.008013367 -0.139199 205 68 SH6553 6553 snR46 3' 30.419819 161.660595 96.040207 1.982453087 -0.019271 205 69 SH20530 20530 YGR148C spliced 30.245108 184.363056 107.304082 2.030616243 -0.160261 205 70 SH18971 18971 YOR096W_15_505793_506766_INTRON_145_545 intron 77.874398 337.579665 77.874398 260.705267 169.2898325 2.228630875 -0.101067 205 71 SH17563 17563 YJL189W_10_75932_76473_INTRON_7_392 intron 29.981271 215.825007 29.981271 186.843736 108.4125035 2.035079373 -0.190219 205 72 SH6840 6840 snR52 3' 28.004086 143.052625 85.5283555 1.932110122 -0.094454 205 73 SH16526 16526 YER131W_5_423587_424307_INTRON_1_361 intron 28.879998 210.424659 28.879998 182.544661 105.7123295 2.024125643 -0.236528 205 74 SH8744 8744 LSR1 / U2 RNA U2 361 378 29.766759 130.109296 79.9380275 1.902753428 0.108013 205 75 SH14021 14021 MT COB Exon4 27.846488 172.651512 27.846488 145.805024 86.825756 1.938648573 -0.121191 205 76 SH14574 14574 MT 21S rRNA intronic 29.68908 210.279307 29.68908 181.590227 105.6396535 2.023826968 -0.179551 205 77 SH3597 3597 Val1 5' flank - tRNA1 1 27.794939 157.793045 92.793992 1.967519858 -0.186931 205 78 SH15679 15679 YBR191W_2_606228_607098_INTRON_12_399 intron 31.538478 216.927431 31.538478 186.388953 108.9637155 2.037281904 -0.108942 205 79 SH15022 15022 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.810481 193.911797 27.810481 167.101316 97.4558985 1.98880813 -0.232202 205 80 SH2915 2915 Pro8 96-105 + 3' flank 96 33.489285 184.475576 108.9824305 2.037356489 -0.019633 205 81 SH7758 7758 snoRNA cluster1 snR76 33.574699 211.610096 33.574699 179.035397 106.305048 2.026553888 0.03393 205 82 SH13318 13318 MT COX1 COX1-ai5a 29.909266 177.698122 29.909266 148.788856 89.349061 1.951089993 0.012816 205 83 SH11437 11437 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4071 4084 43.328718 196.017217 119.6729675 2.07799606 0.050299 205 84 SH18605 18605 YNL069C_14_494998_493953_INTRON_29_477 intron 30.158445 183.830122 30.158445 154.671677 92.415061 1.965742755 -0.001378 205 85 SH2189 2189 Met2 3' flank 30.286043 152.372452 91.3292475 1.960609879 0.019516 205 86 SH15651 15651 YBR189W_2_604466_605466_INTRON_8_420 intron 31.362535 190.13952 31.362535 159.776985 95.56976 1.980320495 0.052978 205 87 SH7463 7463 snR71 5' 36.284192 163.827672 100.055932 2.000242842 0.276694 205 88 SH10627 10627 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 21 39 34.443106 180.503803 107.4734545 2.031301209 0.050737 205 89 SH18452 18452 YMR143W_13_551927_552902_INTRON_25_568 exon/intron 28.703731 191.096404 28.703731 163.392673 96.048202 1.982489239 -0.148411 205 90 SH3309 3309 Thr2 3' flank 28.746323 148.742837 88.74458 1.948141838 -0.069757 205 91 SH1347 1347 Ile3 tRNA 116 128 32.665113 189.360992 111.0130525 2.045374045 -0.09359 205 92 SH15461 15461 YBL087C_2_60732_59815_INTRON_43_546 intron 43.425918 224.939452 43.425918 182.513534 112.969726 2.052962075 0.21476 205 93 SH18420 18420 YMR133W_13_536206_537608_INTRON_1243_1358 intron 30.835977 199.121807 30.835977 169.28583 100.0609035 2.00026442 -0.037409 205 94 SH6953 6953 snR58 3' 32.879366 143.535802 88.207584 1.945505927 0.238417 205 95 SH4786 4786 snR5 snR5 101 118 29.0866 130.449087 79.7678435 1.901827851 0.057299 205 96 SH21331 21331 YPR043W spliced 45.019207 222.409751 133.714479 2.126178437 -0.210389 205 97 SH14552 14552 MT 21S rRNA 21S rRNA3 29.398129 183.819651 29.398129 155.421522 92.4098255 1.96571815 -0.058287 205 98 SH2630 2630 Pro3 101-103 + 3' flank 101 28.589053 152.49845 90.5437515 1.956858485 -0.100822 205 99 SH21544 21544 copy of SH4253 29.782647 159.099987 94.441317 1.975162035 -0.050268 205 100 SH20130 20130 YDL082W spliced 29.979309 156.180568 93.0799385 1.968856088 -0.021606 205 101 SH14852 14852 MT tRNA Ser2; tRNA Arg2 5' 28.131778 172.875559 28.131778 145.743781 86.9377795 1.939208544 -0.099397 205 102 SH20809 20809 YKL186C spliced 28.290193 155.82619 92.0581915 1.964062439 -0.140118 205 103 SH2730 2730 Pro5 tRNA-exon/intron 31 45 36.694002 148.600391 92.6471965 1.966832282 0.420149 205 104 SH17781 17781 YKL180W_11_109271_110131_INTRON_310_615 intron 28.546312 155.839476 28.546312 128.293164 78.419738 1.894425387 0.032424 206 2 SH12958 12958 MT COX1 COX1ai2 35.199611 217.74112 35.199611 183.541509 109.37056 2.038900436 0.048602 206 3 SH6064 6064 snR37 snR37 236 252 31.001234 144.810151 87.9056925 1.944017 0.109191 206 4 SH16296 16296 YDR450W_4_1359912_1360787_INTRON_48_482 intron 35.228592 247.111355 35.228592 212.882763 124.0556775 2.093616645 -0.263637 206 5 SH12971 12971 MT COX1 COX1ai2 31.055422 200.796064 31.055422 170.740642 100.898032 2.003882695 -0.032846 206 6 SH9973 9973 RUF5-1 RUF5-1 671 692 34.224591 196.933178 115.5788845 2.062878499 -0.114484 206 7 SH16899 16899 YGL226C-A_7_73156_72747_INTRON_22_170 intron 28.985779 194.347139 28.985779 166.36136 97.6735695 1.989777059 -0.142705 206 8 SH15499 15499 YBL092W_2_45639_46364_INTRON_1_333 intron 26.871569 151.636083 26.871569 125.764514 76.3180415 1.882627217 -0.075421 206 9 SH12737 12737 MT COX1 exon1 / coxai1 28.900794 210.231397 28.900794 182.330603 105.6156985 2.023728476 -0.23399 206 10 SH11707 11707 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5421 5434 424.364132 531.829007 478.0965695 2.679515628 0.477814 206 11 SH7910 7910 snoRNA cluster1 intergenic 30.709597 193.160962 30.709597 163.451365 97.080481 1.987131919 -0.009452 206 12 SH18394 18394 YMR125W_13_517538_520445_INTRON_26_347 5' exon 30.501191 189.350759 30.501191 159.849568 95.1753795 1.978524617 -0.004601 206 13 SH6725 6725 snR49 151-165 + 3' 151 38.425127 169.056904 103.7410155 2.015950495 0.29235 206 14 SH6556 6556 snR46 3' 36.071395 196.86414 116.4677675 2.066205751 -0.076538 206 15 SH20704 20704 YJL001W spliced 31.74954 175.036386 103.392963 2.014490981 -0.01677 206 16 SH4619 4619 snR3 snR3 11 28 100.466867 279.701806 190.0843365 2.278946331 0.003744 206 17 SH4679 4679 snR4 5' 27.338246 138.591258 82.964752 1.918893619 -0.120443 206 18 SH14500 14500 MT 21S rRNA 21S rRNA3 1677.732031 4239.856265 1677.732031 2563.124234 2120.428133 3.326423558 -0.292824 206 19 SH995 995 Gly2 5' flank 31.046068 160.983734 96.014901 1.982338638 0.026374 206 20 SH1594 1594 Leu4 3' flank 727.729569 691.291233 709.510401 2.850958766 0.717683 206 21 SH21805 21805 copy of SH15280 29.103058 172.243856 100.673457 2.002914982 -0.163132 206 22 SH7870 7870 snoRNA cluster1 snR73 118.881456 437.211081 118.881456 319.329625 219.1055405 2.34065336 -0.07885 206 23 SH18456 18456 YMR143W_13_551927_552902_INTRON_25_568 intron 35.24462 212.422196 35.24462 178.177576 106.711098 2.028209589 0.100183 206 24 SH544 544 Cys1 tRNA 21 33 167.147396 362.609042 264.878219 2.423046248 0.046317 206 25 SH15943 15943 YDL125C_4_239605_239018_INTRON_98_208 exon/intron 29.605976 196.642302 29.605976 168.036326 98.821151 1.994849908 -0.106884 206 26 SH20381 20381 YFL034C-A spliced 43.81207 210.490635 127.1513525 2.104320984 -0.103806 206 27 SH10676 10676 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 266 283 67.303225 230.950669 149.126947 2.173556127 0.015001 206 28 SH3439 3439 Trp1 tRNA 26 43 29.987096 175.582371 102.7847335 2.011928614 -0.126697 206 29 SH16369 16369 YER003C_5_159117_157735_INTRON_32_124 5' exon 30.073941 224.688765 30.073941 195.614824 112.8443825 2.052479944 -0.247427 206 30 SH12756 12756 MT COX1 COX1ai1 30.141153 170.732317 30.141153 141.591164 85.8661585 1.933822034 0.068432 206 31 SH20209 20209 YDR059C spliced 28.159738 172.512047 100.3358925 2.001456318 -0.232116 206 32 SH6762 6762 snR50 5' - 3 -14 3 35.336595 196.486762 115.9116785 2.064127195 -0.08692 206 33 SH6644 6644 snR48 snR48 46 63 34.365732 175.344152 104.854942 2.020588904 0.096981 206 34 SH20698 20698 YJL001W spliced 30.329886 162.789081 96.5594835 1.984794934 -0.031051 206 35 SH15375 15375 YBL027W_2_168385_169338_INTRON_3_386 intron 32.436663 230.28286 32.436663 198.846197 115.64143 2.063113453 -0.184474 206 36 SH18081 18081 YLR344W_12_819312_820142_INTRON_20_466 intron 30.455344 220.462191 30.455344 191.006847 110.7310955 2.044269597 -0.192104 206 37 SH15961 15961 YDL130W_4_229906_230527_INTRON_115_415 intron 30.529781 212.485608 30.529781 182.955827 106.742804 2.028338607 -0.134963 206 38 SH9920 9920 RUF5-1 RUF5-1 406 425 28.542705 147.794345 88.168525 1.945313575 -0.079743 206 39 SH20557 20557 YHL001W spliced 55.562766 205.451172 130.506969 2.115633703 0.108601 206 40 SH13626 13626 MT ATP6 ATP6 28.647929 186.257608 28.647929 158.609679 93.628804 1.971409476 -0.128382 206 41 SH3800 3800 RNaseP 5' flank 2374.691385 2565.49295 2470.092168 3.392713159 0.164753 206 42 SH9444 9444 RUF2 RUF2 61 73 146.49155 318.512676 232.502113 2.366426904 0.141468 206 43 SH13862 13862 MT COB Cytbi2 28.562638 186.434024 28.562638 158.871386 93.717012 1.971818433 -0.135905 206 44 SH14819 14819 "MT tRNAs (Lys, Arg1, Gly)" intergenic 28.438983 184.687366 28.438983 157.248383 92.843683 1.96775236 -0.136591 206 45 SH9895 9895 RUF5-1 RUF5-1 281 297 30.309568 162.369751 96.3396595 1.983805107 -0.030352 206 46 SH18023 18023 YLR306W_12_744151_744851_INTRON_4_137 intron 324.292648 752.100064 324.292648 428.807416 376.550032 2.575822689 0.51277 206 47 SH7585 7585 snR189 5' - 19 -4 19 29.838068 148.414061 89.1260645 1.95000473 0.009913 206 48 SH8789 8789 LSR1 / U2 RNA U2 586 602 76.686531 238.524934 157.6057325 2.19757201 0.062433 206 49 SH2685 2685 Pro4 91-102 + 3' flank 91 61.096782 204.983151 133.0399665 2.123982127 0.185043 206 50 SH9966 9966 RUF5-1 RUF5-1 636 653 33.04431 189.997407 111.5208585 2.047356104 -0.085425 206 51 SH21124 21124 YNL112W spliced 30.884744 176.491378 103.688061 2.015728753 -0.076805 206 52 SH17431 17431 YIL133C_9_99416_98527_INTRON_32_321 intron 28.795572 195.933687 28.795572 168.138115 98.4668435 1.993290016 -0.164974 206 53 SH13282 13282 MT COX1 Exon 5a 28.706668 177.225346 28.706668 149.518678 89.112673 1.949939471 -0.076719 206 54 SH285 285 Arg4 21-33 21 33 48.047469 186.901952 117.4747105 2.069944383 0.222254 206 55 SH9617 9617 RUF3 3' 28.689824 172.329937 100.5098805 2.002208757 -0.192558 206 56 SH11115 11115 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2461 2478 980.280306 748.405679 864.3429925 2.936686115 0.96454 206 57 SH3907 3907 RNase MRP 5' 32.752944 165.036091 98.8945175 1.995172216 0.101167 206 58 SH7086 7086 snR63 5' 28.984678 139.239114 84.111896 1.924857423 -0.000912 206 59 SH5603 5603 snR34 5' 31.069929 157.986037 94.527983 1.975560391 0.043239 206 60 SH20250 20250 YDR381C-A spliced 29.209642 160.668035 94.9388385 1.977443914 -0.09853 206 61 SH7810 7810 snoRNA cluster1 intergenic 29.272456 213.197587 29.272456 184.925131 107.0987935 2.029784578 -0.224459 206 62 SH21785 21785 copy of SH14440 68.944379 229.487763 149.216071 2.1738156 0.048474 206 63 SH10408 10408 RUF8 5' 29.243246 172.436231 100.8397385 2.003631711 -0.155283 206 64 SH5063 5063 snR11 5' 33.080408 165.16202 99.121214 1.996166612 0.118989 206 65 SH20132 20132 YDL083C spliced 40.765573 182.015653 111.390613 2.046848594 0.180808 206 66 SH7420 7420 snR69 snR69 1 17 107.891985 260.322716 184.1073505 2.265071128 0.210435 206 67 SH6848 6848 snR52 3' 32.550096 154.102028 93.326062 1.970002941 0.159199 206 68 SH11402 11402 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3896 3911 41.989117 165.583665 103.786391 2.01614041 0.407795 206 69 SH10571 10571 RUF8 RUF8 781 795 39.846833 152.837321 96.342077 1.983816005 0.506072 206 70 SH2617 2617 Pro3 tRNA-exon/intron 36 52 32.037528 167.228046 99.632787 1.998402279 0.046476 206 71 SH1073 1073 Gly3 3' flank 30.017363 191.822899 110.920131 2.045010374 -0.21665 206 72 SH2494 2494 Pro1 5' flank 39.382129 186.777576 113.0798525 2.053385233 0.100136 206 73 SH15117 15117 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 3' 27.955438 172.141021 27.955438 145.185583 86.5705105 1.937369979 -0.109649 206 74 SH16341 16341 YDR500C_4_1450856_1450201_INTRON_8_396 intron 1550.733642 3707.822579 1550.733642 2158.088937 1854.41129 3.268206063 -0.127494 206 75 SH3703 3703 Val3 5' flank - tRNA15 15 37.21558 166.368366 101.791973 2.007713532 0.281087 206 76 SH4163 4163 SRP RNA 3' 35.268014 179.688625 107.4783195 2.031320867 0.086727 206 77 SH3365 3365 Thr4 5' flank 27.731109 128.982276 78.3566925 1.894076096 -0.031603 206 78 SH13971 13971 MT COB Cytbi3 29.571251 189.299708 29.571251 160.728457 95.149854 1.978408126 -0.0733 206 79 SH1106 1106 Gly4 tRNA 6 23 59.564217 189.582911 124.573564 2.09542589 0.333081 206 80 SH7974 7974 snoRNA cluster 2 snR57 29.591249 178.973464 29.591249 150.382215 89.986732 1.95417848 -0.017997 206 81 SH7651 7651 snoRNA cluster1 5' 31.521241 199.901274 31.521241 169.380033 100.450637 2.001952695 0.003114 206 82 SH8433 8433 snoRNA cluster 5 intergenic 35.375541 232.207756 35.375541 197.832215 116.603878 2.066712994 -0.101003 206 83 SH14609 14609 MT 21S rRNA Sce1 endonuc 36.456551 205.755517 36.456551 170.298966 103.3777585 2.014427111 0.216998 206 84 SH4382 4382 telomerase RNA telomerase 946 963 33.774512 188.345089 111.0598005 2.045556889 -0.044503 206 85 SH10716 10716 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 466 481 121.58256 356.108389 238.8454745 2.378117017 -0.258271 206 86 SH15647 15647 YBR189W_2_604466_605466_INTRON_8_420 intron 32.17991 200.091282 32.17991 168.911372 100.545641 2.002363247 0.04459 206 87 SH3348 3348 Thr3 3' flank 26.56255 123.970941 75.2667455 1.876603138 -0.087302 206 88 SH4501 4501 U3b (snR17b) U3b 61 78 31.480236 195.810379 113.6453075 2.055551508 -0.194366 206 89 SH12588 12588 MT_15S MT_15S 30.61865 201.315564 30.61865 171.696914 101.157782 2.004999298 -0.064999 206 90 SH6447 6447 snR45 snR45 81 98 431.268301 781.058173 606.163237 2.782589593 -0.13664 206 91 SH4646 4646 snR3 snR3 146 165 31.765142 140.842654 86.303898 1.936030411 0.182213 206 92 SH16814 16814 YGL178W_7_167356_170575_INTRON_4_643 intron 30.878443 177.594443 30.878443 147.716 89.2972215 1.950837946 0.08486 206 93 SH17573 17573 YJL189W_10_75932_76473_INTRON_7_392 3' exon 30.974082 222.851814 30.974082 192.877732 111.925907 2.048930622 -0.188319 206 94 SH20923 20923 YLR367W spliced 31.086343 192.65991 111.8731265 2.048725775 -0.182079 206 95 SH4807 4807 snR5 3' 29.248277 140.618988 84.9336325 1.929079699 0.01047 206 96 SH5599 5599 snR34 5' 33.355603 168.643694 100.9996485 2.004319862 0.113281 206 97 SH14116 14116 MT COB intronic 31.545622 189.921932 31.545622 159.37631 95.460966 1.979825825 0.066411 206 98 SH9989 9989 RUF5-1 RUF5-1 751 768 29.725712 185.851599 107.7886555 2.032573055 -0.200813 206 99 SH348 348 Arg5 3' flank 68.400875 192.675708 130.5382915 2.115737924 0.40241 206 100 SH11767 11767 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5721 5738 33.117011 168.311739 100.714375 2.003091462 0.101863 206 101 SH12631 12631 MT_15S MT_15S 34.318507 196.941203 34.318507 163.622696 98.9706015 1.99550621 0.19719 206 102 SH12980 12980 MT COX1 COX1ai2 32.432643 189.927287 32.432643 158.494644 95.4636435 1.979838006 0.123886 206 103 SH21169 21169 YNL312W spliced 30.505111 191.314995 110.910053 2.044970913 -0.192868 206 104 SH2258 2258 Phe1 3' flank 30.611916 185.982412 108.297164 2.034617084 -0.146611 207 2 SH9786 9786 RUF4 RUF4 706 727 28.886941 169.908126 99.3975335 1.997375608 -0.166883 207 3 SH570 570 Cys1 3' flank 35.250809 190.07528 112.6630445 2.051781483 -0.016388 207 4 SH15911 15911 YDL083C_4_307788_306925_INTRON_25_456 intron 33.194506 187.420549 33.194506 155.226043 94.2102745 1.974098269 0.188463 207 5 SH7714 7714 snoRNA cluster1 snR77 52.26365 262.510311 52.26365 211.246661 131.7551555 2.119767618 0.005376 207 6 SH10084 10084 RUF6 RUF6 266 285 41.731109 226.272308 134.0017085 2.127110336 -0.297394 207 7 SH7433 7433 snR69 snR69 66 83 134.296797 305.596233 219.946515 2.342317085 0.127779 207 8 SH15425 15425 YBL072C_2_89435_88518_INTRON_1_308 intron 31.188368 202.70527 31.188368 172.516902 101.852635 2.007972269 -0.035376 207 9 SH5396 5396 snR31 snR31 46 62 31.121169 179.312435 105.216802 2.022085098 -0.078661 207 10 SH4840 4840 snR8 5' 30.996853 175.865493 103.431173 2.01465145 -0.066422 207 11 SH4514 4514 U3b (snR17b) U3b 126 143 32.891739 194.153883 113.522811 2.055083136 -0.127487 207 12 SH10382 10382 RUF7 3' 29.550162 168.116987 98.8335745 1.994904503 -0.111189 207 13 SH1198 1198 Ile1 5' flank 32.350562 156.539219 94.4448905 1.975178467 0.131762 207 14 SH10160 10160 RUF6 RUF6 646 663 30.013872 179.041818 104.527845 2.019231997 -0.144852 207 15 SH4433 4433 telomerase RNA telomerase 1201 1215 27.718362 170.08251 98.900436 1.995198206 -0.253413 207 16 SH8669 8669 LSR1 / U2 RNA 5' - 3 -14 3 31.435116 165.355142 98.395129 1.992973599 0.022434 207 17 SH6843 6843 snR52 3' 37.109757 172.120372 104.6150645 2.019594227 0.22032 207 18 SH20905 20905 YLR316C spliced 31.010512 185.68219 108.346351 2.034814289 -0.122754 207 19 SH10642 10642 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 96 117 38.726545 205.718855 122.2227 2.087151873 -0.127488 207 20 SH21934 21934 copy of SH19617 34.783581 189.502405 112.142993 2.049772143 -0.019574 207 21 SH6414 6414 snR45 5' 40.715152 203.098279 121.9067155 2.08602763 -0.068137 207 22 SH15781 15781 YDL012C_4_431513_431104_INTRON_46_131 3' exon 38.898225 225.639541 38.898225 187.741316 113.3197705 2.054305686 0.08018 207 23 SH5292 5292 snR30 snR30 311 327 41.078889 169.806975 105.442932 2.023017474 0.337438 207 24 SH154 154 Arg1 3' flank 27.431222 151.095646 89.263434 1.95067359 -0.180612 207 25 SH15354 15354 YBL026W_2_170585_171000_INTRON_55_182 intron 29.602073 181.752037 29.602073 153.149964 91.3760185 1.960832231 -0.032012 207 26 SH17627 17627 YJR094W-A_10_608000_608553_INTRON_3_277 intron 29.784858 191.327385 29.784858 162.542527 96.1636925 1.983011131 -0.067455 207 27 SH8894 8894 LSR1 / U2 RNA U2 1111 1127 33.989001 147.305446 90.6472235 1.957354506 0.285891 207 28 SH16514 16514 YER117W_5_396765_397649_INTRON_43_513 intron 30.088803 192.795087 30.088803 163.706284 96.8975435 1.986312767 -0.052164 207 29 SH19615 19615 RNA14 1.1 32.236745 148.086874 90.1618095 1.955022619 0.172167 207 30 SH14532 14532 MT 21S rRNA 21S rRNA3 30.28745 186.538779 30.28745 157.251329 93.7693895 1.972061088 -0.005919 207 31 SH967 967 Gly1 3' flank 28.309341 138.310061 83.309701 1.920695576 -0.045347 207 32 SH20765 20765 YJR145C spliced 36.564372 183.53065 110.047511 2.041580224 0.085807 207 33 SH5273 5273 snR30 snR30 216 230 196.158799 299.200882 247.6798405 2.393890659 0.5661 207 34 SH1792 1792 Leu8 5' flank - tRNA3 3 32.568848 181.303847 106.9363475 2.029125346 -0.023753 207 35 SH877 877 Glu2 3' flank 32.631294 154.146592 93.388943 1.97029546 0.163563 207 36 SH5872 5872 snR35 3' 32.701344 178.295082 105.498213 2.023245103 0.009349 207 37 SH16011 16011 YDL137W_4_216158_217074_INTRON_1_332 intron 30.705528 168.060478 30.705528 138.35495 84.530239 1.927012097 0.125522 207 38 SH20628 20628 YHR123W spliced 30.77483 165.950785 98.3628075 1.992830916 -0.020904 207 39 SH4298 4298 telomerase RNA telomerase 526 545 28.757011 135.312168 82.0345895 1.913997009 0.004774 207 40 SH18961 18961 YOL127W_15_80347_81189_INTRON_14_427 intron 28.794368 208.570022 28.794368 180.775654 104.785011 2.020299163 -0.232185 207 41 SH15289 15289 MT 9S rRNA 9S 30.882655 214.084938 30.882655 184.202283 107.542469 2.031580003 -0.120379 207 42 SH1042 1042 Gly3 5' flank 28.76937 171.123801 99.9465855 1.999767962 -0.181122 207 43 SH12973 12973 MT COX1 COX1ai2 30.75979 173.090911 30.75979 143.331121 87.0454555 1.939746102 0.101281 207 44 SH2069 2069 Lys4 tRNA 11 25 45.087602 193.07242 119.080011 2.075838866 0.108771 207 45 SH2201 2201 Met2 3' flank 30.416747 159.968425 95.192586 1.978603125 -0.010956 207 46 SH7121 7121 snR63 snR63 111 130 32.206807 150.513752 91.3602795 1.96075742 0.157071 207 47 SH19520 19520 ACT1 31.915166 186.209409 109.0622875 2.037674602 -0.093092 207 48 SH14226 14226 MT ATP9 ATP9 33.609048 185.650699 33.609048 153.041651 93.3253495 1.969999625 0.226063 207 49 SH9604 9604 RUF3 RUF3 406 422 27.363401 113.862941 70.613171 1.848885715 0.044628 207 50 SH20481 20481 YGL226C-A spliced 29.087109 186.309659 107.698384 2.032209187 -0.243912 207 51 SH17849 17849 YKR094C_11_618384_617630_INTRON_9_376 3' exon 28.8727 171.882468 28.8727 144.009768 86.441234 1.936720958 -0.035318 207 52 SH20570 20570 YHR010W spliced 36.453036 142.920989 89.6870125 1.952729558 0.447425 207 53 SH5963 5963 snR36 snR36 271 287 28.596001 140.370753 84.483377 1.926771265 -0.035653 207 54 SH5413 5413 snR31 snR31 131 147 30.470089 163.727031 97.09856 1.987212789 -0.026134 207 55 SH14910 14910 MT tRNA Tyr 5' 28.556487 222.120545 28.556487 194.564058 111.5602725 2.047509566 -0.322374 207 56 SH12018 12018 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6976 6996 71.297472 250.289168 160.79332 2.206268002 -0.098385 207 57 SH21488 21488 copy of SH1854 1938.718817 2461.70793 2200.213374 3.3424648 -0.038545 207 58 SH8008 8008 snoRNA cluster 2 intergenic 32.757083 188.326383 32.757083 156.5693 94.6631915 1.976181142 0.154911 207 59 SH11759 11759 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5681 5694 25212.85489 26440.97291 25826.9139 4.412072515 -0.472122 207 60 SH1715 1715 Leu6 3' flank 29.113406 153.448455 91.2809305 1.960380059 -0.068134 207 61 SH12037 12037 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7071 7093 27.223596 127.274423 77.2490095 1.88789292 -0.058544 207 62 SH16298 16298 YDR450W_4_1359912_1360787_INTRON_48_482 intron 35.128317 212.066418 35.128317 177.938101 106.533209 2.027485009 0.098493 207 63 SH16656 16656 YFR032C-A_6_223758_223245_INTRON_1_331 5' exon 29.190027 170.628236 29.190027 142.438209 85.814118 1.933558743 -0.003746 207 64 SH6394 6394 snR43 3' 27.152997 115.612214 71.3826055 1.853592396 0.01607 207 65 SH386 386 Asn1 11-26 11 26 74.188415 217.317586 145.7530005 2.163617504 0.221758 207 66 SH5869 5869 snR35 531-540 + 3' 531 34.692436 190.293021 112.4927285 2.051124451 -0.030177 207 67 SH5501 5501 snR32 snR32 166 181 475.26632 871.827789 673.5470545 2.828367941 -0.195181 207 68 SH1346 1346 Ile3 tRNA 111 123 30.468922 166.06973 98.269326 1.992417977 -0.040307 207 69 SH18747 18747 YNL162W_14_331319_332151_INTRON_5_516 intron 80.387695 341.57383 80.387695 262.186135 171.286915 2.233724187 -0.082736 207 70 SH9532 9532 RUF3 RUF3 46 64 35.899199 190.501006 113.2001025 2.05384682 -0.008365 207 71 SH10250 10250 RUF6 3' 28.156554 146.402163 87.2793585 1.940911546 -0.101055 207 72 SH17158 17158 YHR016C_8_138446_136872_INTRON_48_215 5' exon 29.945118 202.686378 29.945118 173.74126 101.843189 2.00793199 -0.118606 207 73 SH9819 9819 RUF5-1 5' 29.845888 156.576133 93.2110105 1.969467216 -0.032912 207 74 SH6732 6732 snR49 3' 29.753316 149.728712 89.741014 1.952990972 -0.003134 207 75 SH11033 11033 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2051 2064 2742.091024 1968.920617 2355.505821 3.372084182 0.768954 207 76 SH20377 20377 YER179W spliced 31.456732 167.018888 99.23781 1.996677172 0.013547 207 77 SH20293 20293 YDR500C spliced 164.424559 345.060853 254.742706 2.406101758 0.118185 207 78 SH21689 21689 copy of SH10449 29.471256 162.891601 96.1814285 1.983091223 -0.09116 207 79 SH2071 2071 Lys4 tRNA 21 33 36.897347 169.570624 103.2339855 2.013822694 0.238628 207 80 SH19368 19368 YPR028W_16_623522_624197_INTRON_52_184 intron 25.737197 152.018441 25.737197 127.281244 76.5092205 1.883713777 -0.174026 207 81 SH18062 18062 YLR344W_12_819312_820142_INTRON_20_466 5' exon 35.093478 219.456152 35.093478 185.362674 110.228076 2.042292227 0.028323 207 82 SH532 532 Cys1 5' flank 29.577054 150.848803 90.2129285 1.955268781 -0.021503 207 83 SH576 576 Gln1 5' flank 37.197325 187.011531 112.104428 2.049622767 0.057029 207 84 SH12412 12412 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.708784 179.020345 31.708784 148.311561 90.0101725 1.954291594 0.136669 207 85 SH18988 18988 YOR096W_15_505793_506766_INTRON_145_545 intron/exon 31.872208 182.433357 31.872208 151.561149 91.7166785 1.962448318 0.12978 207 86 SH67 67 Ala2 5' flank 32.043586 156.424302 94.233944 1.974207368 0.114684 207 87 SH13183 13183 MT COX1 Exon4 36.045841 203.606674 36.045841 168.560833 102.303337 2.0098898 0.220737 207 88 SH18299 18299 YML073C_13_124172_123227_INTRON_16_430 intron 53.606912 286.710257 53.606912 234.103345 143.8551285 2.157925349 -0.196679 207 89 SH16493 16493 YER117W_5_396765_397649_INTRON_43_513 exon/intron 30.593877 195.737779 30.593877 166.143902 98.3688895 1.992857769 -0.03311 207 90 SH18919 18919 YOL121C_15_92849_92025_INTRON_21_410 exon/intron 32.667106 186.795415 32.667106 155.128309 93.8977075 1.972654989 0.159163 207 91 SH1037 1037 Gly3 5' flank 31.825186 149.921508 90.873347 1.958436524 0.135527 207 92 SH3011 3011 Ser2 tRNA 16 32 149.183586 387.366369 268.2749775 2.428580167 -0.195737 207 93 SH4932 4932 snR9 snR9 66 78 40.936876 204.864106 122.900491 2.089553618 -0.084661 207 94 SH12753 12753 MT COX1 COX1ai1 31.2345 204.715174 31.2345 174.480674 102.857587 2.012236332 -0.044113 207 95 SH12305 12305 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.346706 233.724092 35.346706 199.377386 117.362046 2.069527672 -0.118524 207 96 SH20113 20113 YDL075W spliced 31.536369 194.535544 113.0359565 2.053216614 -0.18121 207 97 SH7801 7801 snoRNA cluster1 snR75 33.705041 176.067088 33.705041 143.362047 88.533544 1.947107849 0.29087 207 98 SH658 658 Gln2 3' flank 29.85753 152.622854 91.240192 1.960186191 -0.011387 207 99 SH3455 3455 Trp1 106 + 3' flank 106 32.038167 148.045738 90.0419525 1.954444904 0.159569 207 100 SH14635 14635 MT 21S rRNA Sce1 endonuc 30.162188 186.068352 30.162188 156.906164 93.534176 1.970970325 -0.01274 207 101 SH8287 8287 snoRNA cluster4 intergenic 30.298363 210.6025 30.298363 181.304137 105.80125 2.024490799 -0.139973 207 102 SH10150 10150 RUF6 RUF6 596 618 28.363316 148.629849 88.4965825 1.9469265 -0.097415 207 103 SH8408 8408 snoRNA cluster 5 snR190 28.455714 174.59955 28.455714 147.143836 87.799775 1.943493403 -0.082734 207 104 SH19339 19339 YPL241C_16_96258_95372_INTRON_26_105 intron 30.606766 181.245403 30.606766 151.638637 91.1227015 1.959626587 0.045289 208 2 SH7545 7545 snR79 snR79 66 82 44.734838 201.071151 122.9029945 2.089562464 0.012446 208 3 SH11456 11456 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4166 4179 190.658979 345.918852 268.2889155 2.42860273 0.275044 208 4 SH13021 13021 MT COX1 COX1ai2 31.117924 183.066412 31.117924 152.948488 92.033206 1.963944551 0.072694 208 5 SH12024 12024 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7006 7024 31.189786 177.028337 104.1090615 2.017488532 -0.061519 208 6 SH5116 5116 snR11 snR11 181 200 35.471662 174.858831 105.1652465 2.021872244 0.139602 208 7 SH2298 2298 Phe2 86-92 + 3' flank 86 29.168543 145.397028 87.2827855 1.940928598 -0.021319 208 8 SH1653 1653 Leu5 3' flank 31.264656 179.19105 105.227853 2.022130709 -0.069374 208 9 SH918 918 Glu3 3' flank 29.092307 154.240029 91.666168 1.962209077 -0.073807 208 10 SH2835 2835 Pro7 5' flank 31.06142 180.794494 105.927957 2.025010596 -0.090616 208 11 SH8087 8087 snoRNA cluster 2 3' 28.784479 186.354106 28.784479 158.569627 93.677053 1.97163322 -0.118309 208 12 SH5315 5315 snR30 snR30 426 443 30.61071 157.283741 93.9472255 1.972883959 0.015946 208 13 SH11314 11314 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3456 3471 14933.44282 15224.67999 15079.06141 4.17837431 -0.273441 208 14 SH13201 13201 MT COX1 Exon4 184.202203 591.277359 184.202203 408.075156 296.1386795 2.471495136 -0.056584 208 15 SH1957 1957 Lys2 5' flank - tRNA5 5 29.676787 151.363798 90.5202925 1.956745949 -0.017277 208 16 SH11045 11045 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2111 2129 18269.85465 7712.489419 12991.17203 4.113648334 1.069506 208 17 SH7836 7836 snoRNA cluster1 snR74 33.059194 225.082176 33.059194 193.022982 113.041088 2.053236329 -0.111546 208 18 SH15026 15026 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 31.86974 226.459454 31.86974 195.589714 113.729727 2.055873997 -0.177732 208 19 SH12769 12769 MT COX1 COX1ai1 94.479615 336.967919 94.479615 243.488304 168.9839595 2.227845482 0.21192 208 20 SH11607 11607 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4921 4936 34287.86137 36952.68163 35620.2715 4.551697225 -0.604616 208 21 SH1140 1140 His1 5' flank 32.755301 180.156487 106.455894 2.027169711 -0.006202 208 22 SH2798 2798 Pro6 tRNA 81 95 38.775064 174.932512 106.853788 2.028789923 0.231837 208 23 SH9741 9741 RUF4 RUF4 481 500 29.164542 136.929631 83.0470865 1.919324401 0.025151 208 24 SH6129 6129 snR39B 5' - 7 -14 7 37.309258 171.02587 104.167564 2.017732508 0.237507 208 25 SH1500 1500 Leu3 5' flank 31.594315 178.31504 104.9546775 2.021001798 -0.044787 208 26 SH21553 21553 copy of SH4566 34.842038 169.39161 102.116824 2.009097299 0.171751 208 27 SH6660 6660 snR48 3' 693.985075 955.217167 824.601121 2.916243921 0.132191 208 28 SH15248 15248 MT tRNA fMet tRNA 28.13623 196.618248 28.13623 169.482018 98.809124 1.994797049 -0.219495 208 29 SH19371 19371 YPR043W_16_654161_654842_INTRON_3_405 5' exon 32.343322 199.868841 32.343322 168.525519 100.4344205 2.001882578 0.056382 208 30 SH8983 8983 snR17a / U3a U3a 201 218 30.401146 187.193078 108.797112 2.036617367 -0.166119 208 31 SH1060 1060 Gly3 tRNA 36 48 40.770218 191.728334 116.249276 2.065390257 0.064328 208 32 SH8716 8716 LSR1 / U2 RNA U2 221 238 30.541525 145.254888 87.8982065 1.943980014 0.075702 208 33 SH3997 3997 RNase MRP 3' 30.597448 185.494511 108.0459795 2.033608611 -0.144826 208 34 SH963 963 Gly1 66-72 + 3' flank 66 28.587351 132.562476 80.5749135 1.906199848 0.008311 208 35 SH5659 5659 snR34 snR34 216 230 147.574786 370.509358 259.042072 2.413370305 -0.126902 208 36 SH21578 21578 copy of SH5624 30.780584 156.717405 93.7489945 1.971966618 0.030353 208 37 SH15944 15944 YDL125C_4_239605_239018_INTRON_98_208 intron 32.931488 200.818528 32.931488 168.88704 100.909264 2.003931039 0.087894 208 38 SH11001 11001 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1891 1907 22145.14512 24916.14949 23530.6473 4.371633874 -0.546002 208 39 SH6425 6425 snR45 5' 33.065359 143.148455 88.106907 1.945009956 0.252313 208 40 SH15552 15552 YBR078W_2_393082_394818_INTRON_59_388 3' exon 31.013614 183.205543 31.013614 153.191929 92.1027715 1.964272699 0.064437 208 41 SH11050 11050 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2136 2154 35.204235 140.732382 87.9683085 1.944326241 0.396182 208 42 SH17228 17228 YHR077C_8_255757_252375_INTRON_7_119 exon/intron 28.89291 175.141848 28.89291 147.248938 88.070924 1.944832553 -0.051179 208 43 SH10332 10332 RUF7 RUF7 271 289 32.970219 185.8114 109.3908095 2.038980836 -0.050521 208 44 SH12937 12937 MT COX1 COX1ai2 32.807632 190.575048 32.807632 158.767416 95.787524 1.981308947 0.143629 208 45 SH11066 11066 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2216 2233 17392.31221 14985.97699 16189.1446 4.209223902 -0.050916 208 46 SH2695 2695 Pro4 3' flank 34.347233 197.116103 115.731668 2.063452213 -0.113975 208 47 SH15821 15821 YDL064W_4_337486_338069_INTRON_39_148 intron 34.013054 179.446718 34.013054 146.433664 90.223359 1.955318992 0.292576 208 48 SH13462 13462 MT COX1 intronic 29.661149 174.789841 29.661149 146.128692 87.8949205 1.943963778 0.01004 208 49 SH15533 15533 YBR078W_2_393082_394818_INTRON_59_388 5' exon 33.314085 195.117008 33.314085 162.802923 98.058504 1.991485263 0.146764 208 50 SH21641 21641 copy of SH8351 59.564723 244.868118 152.2164205 2.182461505 -0.206667 208 51 SH7979 7979 snoRNA cluster 2 snR57 55.150518 253.303033 55.150518 199.152515 127.1515165 2.104321544 0.171917 208 52 SH13410 13410 MT COX1 intronic 26.704378 178.305031 26.704378 152.600653 89.6525155 1.95256248 -0.244893 208 53 SH4864 4864 snR8 snR8 101 116 32.343395 152.260389 92.301892 1.965210603 0.156507 208 54 SH4915 4915 snR9 5' 38.029359 180.800103 109.414731 2.039075797 0.146246 208 55 SH8714 8714 LSR1 / U2 RNA U2 211 226 32.268751 179.231644 105.7501975 2.024281187 -0.015445 208 56 SH16913 16913 YGL251C_7_31636_27921_INTRON_59_210 5' exon 163.666758 520.189417 163.666758 357.522659 260.5947085 2.415965593 0.049022 208 57 SH3764 3764 Val4 tRNA 46 58 34.398852 189.511955 111.9554035 2.04904506 -0.032983 208 58 SH16539 16539 YER131W_5_423587_424307_INTRON_1_361 intron/exon 30.687161 195.484503 30.687161 165.797342 98.2422515 1.992298307 -0.025297 208 59 SH13606 13606 MT ATP8/AAP1 ATP8 / 3' 28.89454 204.678652 28.89454 176.784112 102.839326 2.012159222 -0.203008 208 60 SH2101 2101 Lys4 3' flank 29.022266 169.585591 99.3039285 1.99696643 -0.155644 208 61 SH338 338 Arg5 tRNA 26 43 29.113144 164.307533 96.7103385 1.985472903 -0.123543 208 62 SH4846 4846 snR8 snR8 11 29 37.026272 149.514366 93.270319 1.969743462 0.430771 208 63 SH17413 17413 YIL106W_9_166412_167441_INTRON_21_105 intron 31.111356 219.193178 31.111356 189.081822 110.096589 2.041773864 -0.149481 208 64 SH7809 7809 snoRNA cluster1 intergenic 29.088776 183.510409 29.088776 155.421633 92.2552045 1.964990876 -0.080241 208 65 SH12400 12400 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.946557 186.823605 30.946557 156.877048 93.9118025 1.972720176 0.040689 208 66 SH11103 11103 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2401 2419 106.019152 258.801477 182.4103145 2.261049392 0.204598 208 67 SH1684 1684 Leu6 5' flank - tRNA2 2 34.54361 190.761834 112.652722 2.05174169 -0.039045 208 68 SH1913 1913 Lys1 tRNA 21 35 36.302729 173.474167 104.888448 2.020727659 0.18076 208 69 SH13375 13375 MT COX1 intronic 28.447694 183.588536 28.447694 156.140842 92.294268 1.96517473 -0.13023 208 70 SH13028 13028 MT COX1 COX1ai2 30.22398 192.299367 30.22398 163.075387 96.6496835 1.985200436 -0.039734 208 71 SH1253 1253 Ile2 5' flank 30.090663 181.781982 105.9363225 2.025044893 -0.155507 208 72 SH83 83 Ala2 15-63 51 63 28.071878 166.220568 97.146223 1.98742592 -0.208506 208 73 SH11995 11995 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6861 6874 62.035094 211.082474 136.558784 2.135319641 0.134255 208 74 SH12260 12260 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.485748 217.970872 33.485748 185.485124 109.485436 2.039356352 -0.028969 208 75 SH21055 21055 YMR143W spliced 31.489463 159.548179 95.518821 1.980088953 0.061985 208 76 SH8675 8675 LSR1 / U2 RNA U2 16 32 31.383673 182.435063 106.909368 2.029015762 -0.0805 208 77 SH5023 5023 snR10 snR10 146 160 48.084334 196.376706 122.23052 2.087179659 0.111482 208 78 SH11087 11087 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2321 2336 83.54435 244.054564 163.799457 2.214312458 0.093331 208 79 SH13727 13727 MT COB 5'/Exon1 29.334339 195.030016 29.334339 166.695677 98.015008 1.99129258 -0.119524 208 80 SH10012 10012 RUF6 5' 36.753816 162.900676 99.827246 1.99924909 0.301675 208 81 SH7459 7459 snR71 5' 34.936799 205.157194 120.0469965 2.079351299 -0.189015 208 82 SH9910 9910 RUF5-1 RUF5-1 356 374 33.159473 171.332689 102.246081 2.009646671 0.086184 208 83 SH12088 12088 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7326 7343 55.776915 247.337061 151.556988 2.180575966 -0.281006 208 84 SH10754 10754 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 656 674 37.195779 203.082794 120.1392865 2.079685048 -0.122554 208 85 SH15271 15271 MT 9S rRNA 9S 29.84771 197.533987 29.84771 168.686277 99.2669935 1.996804869 -0.094697 208 86 SH7919 7919 snoRNA cluster1 snR72 30.0255 187.432122 30.0255 158.406622 94.216061 1.974124943 -0.029876 208 87 SH8804 8804 LSR1 / U2 RNA U2 661 680 29.255261 148.465883 88.860572 1.948709104 -0.031344 208 88 SH21462 21462 copy of SH808 32.312892 185.552235 108.9325635 2.037157724 -0.07229 208 89 SH19616 19616 RNA14 1.1 52.850644 236.771556 144.8111 2.160801852 -0.231561 208 90 SH14447 14447 MT 21S rRNA 21S rRNA3 28.796858 193.131532 28.796858 165.334674 97.065766 1.987066086 -0.151261 208 91 SH9460 9460 RUF2 RUF2 141 159 33.82995 177.211133 105.5205415 2.023337011 0.060285 208 92 SH4978 4978 snR10 5' 33.019616 149.555664 91.28764 1.96041198 0.213969 208 93 SH14536 14536 MT 21S rRNA 21S rRNA3 31.211137 202.316483 31.211137 172.105346 101.6582415 2.007142593 -0.031585 208 94 SH20975 20975 YML034W spliced 41.290096 202.292085 121.7910905 2.085615519 -0.050633 208 95 SH14592 14592 MT 21S rRNA Sce1 endonuc 31.522506 242.409365 31.522506 211.886859 121.7046825 2.085307288 -0.332066 208 96 SH15540 15540 YBR078W_2_393082_394818_INTRON_59_388 intron 29.679955 164.567855 29.679955 135.8879 82.7839275 1.917946027 0.067997 208 97 SH1791 1791 Leu8 5' flank 29.828525 166.745417 98.286971 1.992495951 -0.085095 208 98 SH18491 18491 YMR194W_13_651144_651909_INTRON_17_479 intron 29.974107 191.797764 29.974107 162.823657 96.398882 1.984071997 -0.055711 208 99 SH14726 14726 MT tRNA cys; tRNA his intergenic 36.212891 229.051213 36.212891 193.838322 115.0256065 2.060794532 -0.040033 208 100 SH16506 16506 YER117W_5_396765_397649_INTRON_43_513 intron 34.326053 220.313532 34.326053 186.987479 110.656766 2.043977974 -0.012891 208 101 SH5024 5024 snR10 snR10 151 167 28.305816 150.095022 89.200419 1.950366894 -0.109333 208 102 SH15615 15615 YBR181C_2_592732_591670_INTRON_7_358 intron 32.514739 216.384209 32.514739 184.86947 108.6921045 2.036197998 -0.058609 208 103 SH3468 3468 Trp1 3' flank 84.857579 247.121931 165.989755 2.220081284 0.083314 208 104 SH2015 2015 Lys3 tRNA 21 33 38.938807 202.02967 120.4842385 2.080930237 -0.082854 209 2 SH17049 17049 YGR214W_7_920570_921783_INTRON_91_545 intron 33.060458 213.82514 33.060458 181.764682 107.41257 2.031055108 -0.01009 209 3 SH9249 9249 snR6 / U6 RNA 3' 28.927158 142.994023 85.9605905 1.93429939 -0.025833 209 4 SH8979 8979 snR17a / U3a U3a 181 198 238.866249 468.830998 353.8486235 2.548817511 -0.001235 209 5 SH15643 15643 YBR189W_2_604466_605466_INTRON_8_420 5' exon 84.403236 356.175909 84.403236 272.772673 178.5879545 2.251852163 -0.11502 209 6 SH16221 16221 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 39.736189 218.970808 39.736189 180.234619 109.985404 2.041335054 0.18413 209 7 SH13025 13025 MT COX1 COX1ai2 29.193302 223.229621 29.193302 195.036319 112.1148105 2.049662987 -0.283608 209 8 SH3900 3900 RNase MRP 5' 29.181528 139.120449 84.1509885 1.925059222 0.014008 209 9 SH6002 6002 snR37 5' 31.217895 157.156607 94.187251 1.973992122 0.057363 209 10 SH8945 8945 snR17a / U3a U3a 11 29 31.076412 170.348756 100.712584 2.003083739 -0.029249 209 11 SH5442 5442 snR31 3' 30.86856 175.272146 103.070353 2.013133763 -0.070742 209 12 SH6641 6641 snR48 snR48 31 47 32.667273 148.171791 90.419532 1.956262255 0.199236 209 13 SH21486 21486 copy of SH1852 22868.71723 28733.02748 25800.87235 4.41163439 -0.730735 209 14 SH11384 11384 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3806 3826 18087.52185 16697.37324 17392.44754 4.240360702 -0.172103 209 15 SH4450 4450 telomerase RNA 1286-1301 + 3' 1286 34.62693 157.392981 96.0099555 1.982316268 0.253354 209 16 SH19591 19591 AEP2/ATP13 2.1 35.254502 169.627161 102.4408315 2.010473095 0.183504 209 17 SH10703 10703 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 401 419 34.937056 156.214712 95.575884 1.980348324 0.277657 209 18 SH3375 3375 Thr4 5' flank 40.558459 163.327426 101.9429425 2.008357165 0.413149 209 19 SH7560 7560 snR79 3' 46.243763 159.32578 102.7847715 2.011928775 0.559984 209 20 SH17451 17451 YIL148W_9_68708_69528_INTRON_9_442 intron 48.155211 231.942227 48.155211 184.787016 116.4711135 2.066218227 0.249282 209 21 SH4179 4179 telomerase RNA 5' 28.782344 153.896042 91.339193 1.96065717 -0.094228 209 22 SH5143 5143 snR11 3' 50.466064 169.171333 109.8186985 2.040676292 0.478407 209 23 SH6587 6587 snR47 snR47 41 62 66.662905 199.055203 132.859054 2.123391156 0.313911 209 24 SH19596 19596 AEP2/ATP13 2.1 36.301733 193.417225 114.859479 2.060166842 -0.033563 209 25 SH21490 21490 copy of SH2038 53.664341 235.112734 144.3885375 2.159532717 -0.205016 209 26 SH18526 18526 YMR225C_13_721402_720959_INTRON_59_205 intron 31.85879 215.265049 31.85879 184.406259 108.1325245 2.033956342 -0.07879 209 27 SH4258 4258 telomerase RNA telomerase 326 343 32.085112 190.099181 111.0921465 2.045683358 -0.121617 209 28 SH20876 20876 YLR185W spliced 102.921664 290.011048 196.466356 2.29328819 -0.041969 209 29 SH1814 1814 Leu8 96-101 + 3' flank 96 26.2839 141.49502 83.88946 1.923707399 -0.218569 209 30 SH14950 14950 MT tRNA Met tRNA 30.487986 167.855126 30.487986 138.36714 84.427563 1.926484254 0.110479 209 31 SH17380 17380 YIL052C_9_257061_256224_INTRON_38_509 intron 32.635689 192.7151 32.635689 161.079411 96.85755 1.986133479 0.119117 209 32 SH19755 19755 Negative Control 32.709286 176.472202 104.590744 2.019493252 0.026981 209 33 SH4362 4362 telomerase RNA telomerase 846 860 32.774947 173.730959 103.252953 2.013902481 0.050257 209 34 SH11813 11813 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5951 5969 41.159328 184.082798 112.621063 2.051619622 0.163014 209 35 SH20529 20529 YGR118W spliced 43.333845 182.743959 113.038902 2.05322793 0.210603 209 36 SH3966 3966 RNase MRP RNaseMRP 246 264 30.897222 173.077677 101.9874495 2.008546731 -0.056206 209 37 SH10817 10817 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 971 987 3803.398516 4871.974263 4337.68639 3.63725815 -0.231847 209 38 SH2725 2725 Pro5 tRNA 6 22 304.443158 533.768252 419.105705 2.622323573 0.068353 209 39 SH21906 21906 copy of SH19401 31.096457 182.095539 106.595998 2.0277409 -0.095794 209 40 SH10940 10940 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1586 1601 47.979597 176.167524 112.0735605 2.049503169 0.355479 209 41 SH6510 6510 snR46 snR46 41 58 31.140701 158.683773 94.912237 1.977322209 0.044391 209 42 SH18458 18458 YMR143W_13_551927_552902_INTRON_25_568 intron 29.005338 166.508441 29.005338 138.503103 83.7542205 1.923006701 0.004719 209 43 SH17355 17355 YIL052C_9_257061_256224_INTRON_38_509 5' exon 67.776 295.787866 67.776 229.011866 148.393933 2.171416145 0.038105 209 44 SH12270 12270 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.772266 201.659157 28.772266 173.886891 101.3295785 2.005736236 -0.194147 209 45 SH3143 3143 Ser4 3' flank 34.767463 151.707921 93.237692 1.969591514 0.298303 209 46 SH17994 17994 YLR287C-A_12_713158_712537_INTRON_4_433 intron 31.387029 178.546673 31.387029 148.159644 89.7733365 1.953147366 0.116333 209 47 SH10363 10363 RUF7 RUF7 426 443 30.053601 173.494733 101.774167 2.007637556 -0.110403 209 48 SH18499 18499 YMR194W_13_651144_651909_INTRON_17_479 intron 29.723435 164.881631 29.723435 136.158196 82.9408155 1.918768301 0.069532 209 49 SH15948 15948 YDL125C_4_239605_239018_INTRON_98_208 intron 29.393419 190.068483 29.393419 161.675064 95.5342415 1.98015906 -0.090575 209 50 SH17114 17114 YHR010W_8_126513_127484_INTRON_32_592 5' exon 64.541286 307.262292 64.541286 243.721006 154.131146 2.187890407 -0.13012 209 51 SH6844 6844 snR52 3' 32.697216 166.022733 99.3599745 1.997211471 0.091927 209 52 SH4617 4617 snR3 snR3 1 19 69.285462 198.59958 133.942521 2.126918469 0.350117 209 53 SH6018 6018 snR37 snR37 6 23 28.434126 150.904389 89.6692575 1.952643574 -0.103999 209 54 SH2228 2228 Phe1 tRNA 16 28 57.141282 195.96071 126.550996 2.102265568 0.231807 209 55 SH4301 4301 telomerase RNA telomerase 541 558 28.338632 151.334681 89.8366565 1.95345358 -0.113303 209 56 SH542 542 Cys1 tRNA 11 23 74.634065 261.625204 168.1296345 2.225644269 -0.146418 209 57 SH718 718 Gln3 3' flank 32.355087 174.459625 103.407356 2.014551434 0.021902 209 58 SH15487 15487 YBL092W_2_45639_46364_INTRON_1_333 intron 53.868467 283.776174 53.868467 230.907707 142.388087 2.153473655 -0.163757 209 59 SH5385 5385 snR31 5' - 8 -9 8 36.588176 203.5838 120.085988 2.079492336 -0.139573 209 60 SH9271 9271 RUF1 5' 28.946266 146.434926 87.690596 1.942953022 -0.042973 209 61 SH3096 3096 Ser3 3' flank 31.009376 183.366165 107.1877705 2.030145238 -0.108101 209 62 SH6609 6609 snR47 3' 29.107203 140.269282 84.6882425 1.92782312 0.002228 209 63 SH18173 18173 YLR448W_12_1028848_1029762_INTRON_16_399 intron 29.114448 206.075213 29.114448 177.960765 103.5376065 2.015098121 -0.195575 209 64 SH14123 14123 MT COB intronic 31.036169 177.376471 31.036169 147.340302 89.1882355 1.950307572 0.097496 209 65 SH8652 8652 LSR1 / U2 RNA 5' 34.868815 169.038274 101.9535445 2.008402329 0.176195 209 66 SH8443 8443 snoRNA cluster 5 snR128 36.6942 191.584714 36.6942 155.890514 96.292357 1.983591817 0.3715 209 67 SH422 422 Asp1 5' flank 30.70889 144.031608 87.370249 1.941363573 0.093895 209 68 SH12303 12303 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.566872 201.434321 30.566872 171.867449 101.2171605 2.00525415 -0.069172 209 69 SH6646 6646 snR48 snR48 56 73 40.048253 188.672785 114.360519 2.058276118 0.090015 209 70 SH19091 19091 YOR312C_15_901173_900242_INTRON_2_427 exon/intron 30.272389 180.100434 30.272389 150.828045 90.550217 1.956889495 0.026833 209 71 SH9243 9243 snR6 / U6 RNA U6 86 107 35.841203 181.540473 108.690838 2.036192937 0.088738 209 72 SH18532 18532 YMR230W_13_732413_733140_INTRON_53_462 5' exon 31.871861 213.11018 31.871861 182.238319 107.05509 2.029607321 -0.058343 209 73 SH19506 19506 ACT1 35.493094 173.296156 104.394625 2.018678139 0.155474 209 74 SH12852 12852 MT COX1 COX1ai1 61.739079 302.502541 61.739079 241.763462 151.7512705 2.181132336 -0.15102 209 75 SH12819 12819 MT COX1 COX1ai1 27.691872 194.296322 27.691872 167.60445 97.648161 1.989664069 -0.243507 209 76 SH10929 10929 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1531 1544 31.304099 169.600714 100.4524065 2.001960345 -0.011131 209 77 SH5828 5828 snR35 snR35 326 343 33.057325 149.157188 91.1072565 1.959552969 0.218499 209 78 SH5472 5472 snR32 snR32 21 40 31.123578 157.29706 94.210319 1.974098474 0.05036 209 79 SH17356 17356 YIL052C_9_257061_256224_INTRON_38_509 5' exon 29.23039 193.465313 29.23039 165.234923 97.2326565 1.987812151 -0.119761 209 80 SH3270 3270 Thr2 5' flank 34.769971 161.993951 98.381961 1.992915475 0.231786 209 81 SH15486 15486 YBL092W_2_45639_46364_INTRON_1_333 intron 32.953468 197.504277 32.953468 165.550809 99.2521385 1.996739873 0.109413 209 82 SH21080 21080 YMR230W spliced 33.03123 154.533855 93.7825425 1.972122003 0.183786 209 83 SH8990 8990 snR17a / U3a U3a 236 252 79.979655 260.928808 170.4542315 2.231607787 -0.078033 209 84 SH12692 12692 MT ORF 8 (hypothetical) 5' 31.440729 184.771605 31.440729 154.330876 92.8858025 1.967949338 0.086823 209 85 SH11429 11429 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4031 4044 10571.25696 5072.640688 7821.948826 3.89331497 1.02835 209 86 SH20496 20496 YGL251C spliced 33.718472 184.018088 108.86828 2.036901362 -0.007273 209 87 SH17820 17820 YKR057W_11_551293_551878_INTRON_25_346 intron 30.135322 173.118982 30.135322 143.98366 87.059491 1.939816124 0.054967 209 88 SH20460 20460 YGL178W spliced 32.261434 167.174949 99.7181915 1.998774393 0.059818 209 89 SH10898 10898 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1376 1389 54.771498 215.287535 135.0295165 2.130428713 -0.002189 209 90 SH11564 11564 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4706 4723 638.668522 594.255872 616.462197 2.78990645 0.800938 209 91 SH3175 3175 Ser5 5' flank - tRNA11 11 164.531038 399.481411 282.0062245 2.450258694 -0.144105 209 92 SH4037 4037 SRP RNA SRP RNA 76 95 33.096784 159.159611 96.1281975 1.982850799 0.157526 209 93 SH2639 2639 Pro3 3' flank 33.286272 154.59315 93.939711 1.97284922 0.197775 209 94 SH10668 10668 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 226 243 33.468875 172.319658 102.8942665 2.012391176 0.094664 209 95 SH9302 9302 RUF1 RUF1 86 102 33.645211 183.94106 108.7931355 2.036601494 -0.009172 209 96 SH8038 8038 snoRNA cluster 2 snR55/intergenic 32.809376 182.231233 32.809376 150.421857 91.6156165 1.961969508 0.196034 209 97 SH4850 4850 snR8 snR8 31 47 73.601834 197.957192 135.779513 2.132834247 0.406099 209 98 SH8473 8473 snoRNA cluster 5 3' 30.070812 186.678648 30.070812 157.607836 93.839324 1.972384871 -0.022651 209 99 SH6958 6958 snR58 3' 31.212851 146.174054 88.6934525 1.947891561 0.115715 209 100 SH16939 16939 YGR027C_7_534779_534126_INTRON_1_312 intron 32.35082 189.956424 32.35082 158.605604 95.478212 1.979904277 0.118453 209 101 SH11150 11150 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2636 2654 17635.31996 13718.12337 15676.72167 4.195255248 0.107634 209 102 SH3185 3185 Ser5 tRNA 46 58 30.478021 171.885301 101.181661 2.005101805 -0.074719 209 103 SH3532 3532 Tyr2 5' flank 30.541602 166.297607 98.4196045 1.993081615 -0.037246 209 104 SH3208 3208 Ser5 3' flank 30.590026 158.900909 94.7454675 1.976558443 0.006257 210 2 SH4610 4610 snR3 5' 30.917897 138.840401 84.879149 1.928801017 0.137308 210 3 SH2541 2541 Pro2 5' flank 31.0102 177.493723 104.2519615 2.018084235 -0.074981 210 4 SH8269 8269 snoRNA cluster4 snR67 37.444102 221.483225 37.444102 185.039123 111.2416125 2.046267276 0.0848 210 5 SH10920 10920 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1486 1505 611.074945 957.996503 784.535724 2.894612724 -0.033114 210 6 SH2946 2946 Ser1 5' flank 29.153677 164.672723 96.9132 1.986382934 -0.122454 210 7 SH20505 20505 YGR027C spliced 31.300666 148.775234 90.03795 1.954425598 0.107256 210 8 SH15571 15571 YBR084C-A_2_415219_414144_INTRON_3_508 intron 29.171853 198.475337 29.171853 170.303484 99.7376685 1.998859212 -0.148397 210 9 SH12126 12126 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7516 7531 97.856378 290.534053 194.1952155 2.288238526 -0.094533 210 10 SH18352 18352 YML124C_13_23684_22049_INTRON_26_323 3' exon 28.960012 194.611955 28.960012 166.651943 97.8059775 1.990365398 -0.145964 210 11 SH9766 9766 RUF4 RUF4 606 624 28.760247 185.787313 107.27378 2.030493584 -0.262185 210 12 SH7055 7055 snR62 snR62 66 83 49.19293 216.89507 133.044 2.123995294 -0.09425 210 13 SH6199 6199 snR40 snR40 56 71 77.526356 232.967589 155.2469725 2.19102314 0.119217 210 14 SH9779 9779 RUF4 RUF4 671 685 35.983066 192.102564 114.042815 2.057067929 -0.024948 210 15 SH17945 17945 YLR128W_12_398531_399434_INTRON_4_97 intron 29.581061 175.986334 29.581061 147.405273 88.493167 1.946909738 -0.002515 210 16 SH10634 10634 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 56 71 31.243069 185.350565 108.296817 2.034615692 -0.110788 210 17 SH9183 9183 snR7 U5 RNA U5 186 202 30.958383 143.517652 87.2380175 1.940705788 0.113583 210 18 SH13230 13230 MT COX1 COX1-ai4 26.859066 159.057592 26.859066 133.198526 80.028796 1.903246283 -0.123973 210 19 SH11114 11114 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2456 2473 83.34954 241.083418 162.216479 2.210094971 0.115163 210 20 SH11520 11520 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4486 4508 507.564245 848.206657 677.885451 2.831156313 -0.067951 210 21 SH13222 13222 MT COX1 COX1-ai4 34.579968 203.267119 34.579968 169.687151 102.1335595 2.009168468 0.159765 210 22 SH5980 5980 snR36 3' 26.956274 133.162455 80.0593645 1.903412138 -0.116318 210 23 SH13469 13469 MT COX1 intronic 29.124251 188.44615 29.124251 160.321899 94.723075 1.976455788 -0.102858 210 24 SH16117 16117 YDR064W_4_579453_580447_INTRON_22_560 intron 27.394602 153.356755 27.394602 126.962153 77.1783775 1.887495644 -0.043629 210 25 SH20992 20992 YML073C spliced 34.645177 198.509369 116.577273 2.066613892 -0.123204 210 26 SH21638 21638 copy of SH8143 127.701323 350.472826 239.0870745 2.378556098 -0.177968 210 27 SH267 267 Arg4 5' flank 32.142109 159.847057 95.994583 1.982246726 0.098432 210 28 SH12416 12416 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.293858 187.601476 30.293858 158.307618 94.300738 1.974515092 -0.010904 210 29 SH9949 9949 RUF5-1 RUF5-1 551 567 28.387582 128.628519 78.5080505 1.894914193 0.018792 210 30 SH8080 8080 snoRNA cluster 2 snR61/3' 28.494032 158.797784 28.494032 131.303752 79.898892 1.902540757 0.009431 210 31 SH10439 10439 RUF8 RUF8 121 137 32.713291 189.532138 111.1227145 2.045802842 -0.093349 210 32 SH19895 19895 snR17A spliced 74.525339 231.003801 152.76457 2.184022642 0.101523 210 33 SH3917 3917 RNase MRP RNaseMRP 1 18 39.109083 201.873894 120.4914885 2.080956369 -0.078472 210 34 SH20301 20301 YEL012W spliced 114.264682 298.076882 206.170782 2.314227118 0.010008 210 35 SH19257 19257 YPL143W_16_282121_282969_INTRON_20_544 5' exon 33.007906 215.208204 33.007906 183.200298 108.104102 2.033842174 -0.025271 210 36 SH5168 5168 snR13 5' - 12 -4 12 68.86617 200.037831 134.4520005 2.128567268 0.33023 210 37 SH18446 18446 YMR142C_13_551206_550205_INTRON_5_406 intron 28.970014 173.164725 28.970014 145.194711 87.0823625 1.939930203 -0.034617 210 38 SH15920 15920 YDL083C_4_307788_306925_INTRON_25_456 intron/exon 119.468536 423.43972 119.468536 304.971184 212.21986 2.326786024 0.012179 210 39 SH14948 14948 MT tRNA Met 5' / tRNA 29.093254 192.284743 29.093254 164.191489 96.6423715 1.985167579 -0.124389 210 40 SH7422 7422 snR69 snR69 11 25 60.887731 223.234652 142.0611915 2.152475453 0.002715 210 41 SH20693 20693 YIL148W spliced 31.246711 203.096251 117.171481 2.068821919 -0.264934 210 42 SH13793 13793 MT COB intronic 29.104902 174.43568 29.104902 146.330778 87.71784 1.943087929 -0.030908 210 43 SH15810 15810 YDL061C_4_341182_340627_INTRON_1_408 intron 29.018377 210.233299 29.018377 182.214922 105.6166495 2.023732386 -0.225755 210 44 SH7703 7703 snoRNA cluster1 intergenic/snR77 26.787199 155.197292 26.787199 129.410093 78.098646 1.892643505 -0.10557 210 45 SH17958 17958 YLR185W_12_522665_523290_INTRON_8_366 intron 36.96855 215.109043 36.96855 179.140493 108.0545215 2.033642944 0.146314 210 46 SH7025 7025 snR62 5' 28.411267 201.99311 115.2021885 2.061460729 -0.369977 210 47 SH18077 18077 YLR344W_12_819312_820142_INTRON_20_466 intron 32.179966 194.280087 32.179966 163.100121 97.6400435 1.989627964 0.080163 210 48 SH8384 8384 snoRNA cluster 5 5'/snR190 33.82505 226.817132 33.82505 193.992082 113.908566 2.056556385 -0.092562 210 49 SH2622 2622 Pro3 tRNA-intron/exon 61 75 49.38127 209.050951 129.2161105 2.111316664 -0.010662 210 50 SH6091 6091 snR37 371-386 + 3' 371 29.123752 168.252722 98.688237 1.994265391 -0.142008 210 51 SH6197 6197 snR40 snR40 46 61 32.7193 181.678348 107.198824 2.030190021 -0.021714 210 52 SH930 930 Gly1 5' flank 26.658345 138.665708 82.6620265 1.917306048 -0.172737 210 53 SH4905 4905 snR9 5' 30.324978 161.291841 95.8084095 1.981403631 -0.023901 210 54 SH14585 14585 MT 21S rRNA intronic 51.303593 260.679372 51.303593 210.375779 130.839686 2.116739493 0.001709 210 55 SH21401 21401 Pro8 spliced 32.101466 159.787209 95.9443375 1.982019348 0.096447 210 56 SH11888 11888 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6326 6343 392.706394 391.967576 392.336985 2.59365925 0.893935 210 57 SH17944 17944 YLR128W_12_398531_399434_INTRON_4_97 exon/intron 32.281928 203.500858 32.281928 172.21893 102.250429 2.009665139 0.030804 210 58 SH4897 4897 snR8 3' 38.248585 183.76644 111.0075125 2.045352371 0.11487 210 59 SH12929 12929 MT COX1 COX1ai2 2315.401997 5319.882598 2315.401997 3005.480601 2660.441299 3.424953681 -0.116768 210 60 SH7034 7034 snR62 5' 30.841893 176.011792 103.4268425 2.014633266 -0.076636 210 61 SH6310 6310 snR42 snR42 331 345 70.342398 265.284593 167.8134955 2.224826884 -0.226666 210 62 SH10943 10943 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1601 1616 36.930274 162.247585 99.5889295 1.998211064 0.314191 210 63 SH4576 4576 U3b (snR17b) U3b 436 450 193.313259 457.551795 325.432527 2.512460959 -0.203362 210 64 SH12776 12776 MT COX1 COX1ai1 29.070816 182.544412 29.070816 154.473596 91.772206 1.962711171 -0.076566 210 65 SH11956 11956 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6666 6681 1057.750495 1483.592691 1270.671593 3.104033321 -0.035856 210 66 SH10044 10044 RUF6 RUF6 66 85 30.872121 151.914744 91.3934325 1.960914989 0.06173 210 67 SH3264 3264 Thr2 5' flank 29.781787 146.568485 88.175136 1.945346138 0.016132 210 68 SH1650 1650 Leu5 3' flank 31.587918 154.804389 93.1961535 1.969397988 0.094034 210 69 SH16719 16719 YGL031C_7_438393_437938_INTRON_1_456 3' exon 30.472558 177.184758 30.472558 147.7122 89.092379 1.949840556 0.057421 210 70 SH1069 1069 Gly3 3' flank 28.399069 157.627875 93.013472 1.968545856 -0.141459 210 71 SH10259 10259 RUF7 5' 28.244297 150.269264 89.2567805 1.950641218 -0.11482 210 72 SH21757 21757 copy of SH13182 31.876622 150.942343 91.4094825 1.96099125 0.133382 210 73 SH20936 20936 YLR406C spliced 27.92543 164.745308 96.335369 1.983785765 -0.212139 210 74 SH16119 16119 YDR064W_4_579453_580447_INTRON_22_560 intron 29.645726 178.916945 29.645726 150.271219 89.9584725 1.954042072 -0.013582 210 75 SH10183 10183 RUF6 RUF6 761 776 29.494493 169.167545 99.331019 1.997084891 -0.120149 210 76 SH491 491 Asp2 tRNA 16 30 2138.581428 2962.916069 2550.748749 3.406667682 -0.199007 210 77 SH10277 10277 RUF7 5' - 12 -4 12 29.256787 169.626559 99.441673 1.997568422 -0.139137 210 78 SH10115 10115 RUF6 RUF6 421 442 219.215455 486.871639 353.043547 2.547828278 -0.166456 210 79 SH5960 5960 snR36 snR36 256 275 30.98149 148.048466 89.514978 1.951895709 0.089953 210 80 SH15546 15546 YBR078W_2_393082_394818_INTRON_59_388 intron 31.896178 182.179613 31.896178 151.283435 91.5898065 1.961847141 0.132826 210 81 SH9977 9977 RUF5-1 RUF5-1 691 708 32.853309 197.355206 115.1042575 2.061091388 -0.156484 210 82 SH9440 9440 RUF2 RUF2 41 57 133.583989 284.873683 209.228836 2.320621539 0.253061 210 83 SH9349 9349 RUF1 RUF1 321 340 30.267814 145.70166 87.984737 1.94440734 0.054532 210 84 SH15225 15225 MT COX3 cox3 31.34987 185.283239 31.34987 154.933369 93.1416195 1.969143785 0.07766 210 85 SH6821 6821 snR52 snR52 11 28 5724.346442 6547.121688 6135.734065 3.787866528 -0.17157 210 86 SH6600 6600 snR47 3' 61.170398 230.627151 145.8987745 2.164051644 -0.060948 210 87 SH9974 9974 RUF5-1 RUF5-1 676 697 30.079544 160.755852 95.417698 1.979628935 -0.03807 210 88 SH5794 5794 snR35 snR35 156 177 28.390736 149.292319 88.8415275 1.948616017 -0.098845 210 89 SH8809 8809 LSR1 / U2 RNA U2 686 700 30.536173 141.916728 86.2264505 1.935640509 0.094065 210 90 SH14758 14758 MT ORF11; tRNA Leu; tRNA Gln ORF11 38.555456 255.856441 38.555456 218.300985 128.4282205 2.108660465 -0.265807 210 91 SH4210 4210 telomerase RNA telomerase 86 103 30.980925 153.744229 92.362577 1.965496042 0.059333 210 92 SH15217 15217 MT COX3 cox3 33.163039 185.343836 33.163039 153.180797 93.171918 1.969285036 0.200166 210 93 SH3669 3669 Val2 3' flank 33.372682 185.930814 109.651748 2.040015559 -0.03707 210 94 SH19568 19568 AEP2/ATP13 0.6 130.324507 367.293198 248.8088525 2.395865828 -0.242802 210 95 SH692 692 Gln3 5' flank - tRNA5 5' flank 5 45.831779 204.447033 125.139406 2.097394089 -0.009621 210 96 SH10307 10307 RUF7 RUF7 146 158 6358.412914 6323.499569 6340.956242 3.802154756 0.019713 210 97 SH991 991 Gly2 5' flank 30.022093 171.366188 100.6941405 2.003004199 -0.099822 210 98 SH1558 1558 Leu4 5' flank 30.145072 166.326999 98.2360355 1.992270827 -0.061855 210 99 SH11781 11781 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5791 5806 2799.091497 1470.187862 2134.63968 3.329324578 1.252836 210 100 SH9608 9608 RUF3 426-431 + 3' 426 30.346949 151.349379 90.848164 1.958316155 0.029143 210 101 SH16098 16098 YDR059C_4_569765_569229_INTRON_48_137 intron 32.48351 183.71253 32.48351 152.22902 92.356265 1.965466361 0.165645 210 102 SH19185 19185 YPL079W_16_406631_407534_INTRON_12_432 intron 30.486492 204.839571 30.486492 175.353079 102.9197855 2.012498872 -0.094493 210 103 SH10802 10802 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 896 909 1072.489616 1213.914947 1143.202282 3.058123083 0.301686 210 104 SH17818 17818 YKR057W_11_551293_551878_INTRON_25_346 intron 32.649307 236.945567 32.649307 205.29626 118.9727835 2.075447623 -0.238399 211 2 SH11873 11873 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6251 6266 9177.070403 5581.844597 7379.4575 3.868024436 0.69311 211 3 SH13624 13624 MT ATP6 ATP6 28.87772 176.678741 28.87772 148.801021 88.8393705 1.948605473 -0.060457 211 4 SH6113 6113 snR39B 5' 31.085596 147.524057 89.3048265 1.950874931 0.099789 211 5 SH553 553 Cys1 66-72 + 3' flank 66 3' flank 29.064931 127.015563 78.040247 1.892318635 0.077747 211 6 SH999 999 Gly2 5' flank - tRNA3 3 30.187625 181.387628 105.7876265 2.024434873 -0.147286 211 7 SH13570 13570 MT COX1 Exon 6 29.160201 180.249891 29.160201 152.08969 90.6249455 1.957247758 -0.057596 211 8 SH17577 17577 YJL191W_10_73786_74610_INTRON_11_418 intron 33.364235 200.58023 33.364235 168.215995 100.790115 2.003417941 0.116345 211 9 SH7816 7816 snoRNA cluster1 intergenic 29.059646 209.844587 29.059646 181.784941 105.4222935 2.02293246 -0.220698 211 10 SH10543 10543 RUF8 RUF8 641 662 28.916996 143.231793 86.0743945 1.934873976 -0.027868 211 11 SH16224 16224 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 30.79371 168.978392 30.79371 139.184682 84.989196 1.929363721 0.126902 211 12 SH4317 4317 telomerase RNA telomerase 621 635 30.522176 189.946123 110.2341495 2.042316156 -0.180081 211 13 SH20682 20682 YIL111W spliced 28.171271 145.660332 86.9158015 1.939098739 -0.095996 211 14 SH9887 9887 RUF5-1 RUF5-1 241 258 29.878768 133.94346 81.911114 1.913342832 0.09329 211 15 SH17821 17821 YKR057W_11_551293_551878_INTRON_25_346 intron 27.55148 169.918235 27.55148 143.366755 85.4591175 1.931758404 -0.13048 211 16 SH925 925 Glu3 3' flank 29.238109 165.3901 97.3141045 1.988175791 -0.119974 211 17 SH17297 17297 YHR141C_8_382752_381991_INTRON_5_445 intron 27.020238 151.116197 27.020238 125.095959 76.0580985 1.881145464 -0.059656 211 18 SH12039 12039 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7081 7098 28.78654 163.312518 96.049529 1.98249524 -0.142035 211 19 SH15085 15085 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.745891 168.328126 26.745891 142.582235 84.664063 1.927699106 -0.188703 211 20 SH19178 19178 YPL079W_16_406631_407534_INTRON_12_432 intron 32.555776 175.222722 32.555776 143.666946 88.111361 1.94503191 0.217151 211 21 SH21782 21782 copy of SH14232 30.709036 185.248668 107.978852 2.033338706 -0.136673 211 22 SH16042 16042 YDL191W_4_117665_118518_INTRON_4_494 intron 43.642005 190.972471 43.642005 148.330466 95.9862355 1.982208959 0.665565 211 23 SH9777 9777 RUF4 RUF4 661 673 29.162728 167.644372 98.40355 1.993010766 -0.136298 211 24 SH7849 7849 snoRNA cluster1 snR74/intergenic 27.437345 187.121013 27.437345 160.683668 94.0605065 1.973407313 -0.22851 211 25 SH4854 4854 snR8 snR8 51 65 3328.936135 3013.098978 3171.017557 3.501198647 0.355359 211 26 SH20827 20827 YKR094C spliced 33.994001 174.900367 104.447184 2.018896735 0.088229 211 27 SH10241 10241 RUF6 1051 + 3' 1051 32.204029 175.133248 103.6686385 2.015647395 0.009238 211 28 SH6302 6302 snR42 snR42 291 308 32.399343 151.555791 91.977567 1.963681917 0.163851 211 29 SH7346 7346 snR68 5' 26.378959 130.096183 78.237571 1.893415359 -0.141537 211 30 SH4278 4278 telomerase RNA telomerase 426 440 30.609158 162.469315 96.5392365 1.98470386 -0.010436 211 31 SH9484 9484 RUF2 261-268 + 3' 261 28.628298 144.632045 86.6301715 1.937669174 -0.056582 211 32 SH11199 11199 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2881 2901 32.859369 162.250907 97.555138 1.989250148 0.124524 211 33 SH1415 1415 Leu1 3' flank 28.768216 165.576688 97.172452 1.987543162 -0.154511 211 34 SH14380 14380 MT ORF9 and ORF10 (hypothetical) ORF10 / 3' 30.92301 198.718899 30.92301 168.795889 99.8594495 1.999389168 -0.029195 211 35 SH6985 6985 snR60 snR60 6 24 314.423834 546.817757 430.6207955 2.634094999 0.066797 211 36 SH8217 8217 snoRNA cluster 3; snR51 120.266954 412.460922 120.266954 293.193968 206.730461 2.315404473 0.092584 211 37 SH2261 2261 Phe2 5' flank 29.044514 131.45356 80.249037 1.90443983 0.048272 211 38 SH13244 13244 MT COX1 COX1-ai4 31.220711 195.229169 31.220711 165.008458 98.1145845 1.991733569 0.011772 211 39 SH8040 8040 snoRNA cluster 2 intergenic 29.170418 167.305553 29.170418 139.135135 84.1527765 1.925068449 0.013123 211 40 SH6752 6752 snR50 5' 31.325404 187.980201 109.6528025 2.040019736 -0.131407 211 41 SH21016 21016 YMR033W spliced 29.220778 152.488046 90.854412 1.958346022 -0.055408 211 42 SH6213 6213 snR40 3' 29.189738 145.706742 87.44824 1.941751073 -0.021447 211 43 SH13227 13227 MT COX1 COX1-ai4 29.106456 202.330131 29.106456 174.223675 101.6650655 2.007171745 -0.174525 211 44 SH10080 10080 RUF6 RUF6 246 263 28.964011 179.292382 104.1281965 2.017568346 -0.212833 211 45 SH17959 17959 YLR185W_12_522665_523290_INTRON_8_366 intron 32.925372 211.262126 32.925372 179.336754 106.131063 2.025842514 0.007697 211 46 SH14184 14184 MT COB Exon6 28.504066 157.390754 28.504066 129.886688 79.195377 1.898699831 0.019147 211 47 SH20676 20676 YIL106W spliced 28.204043 154.947742 91.5758925 1.96178116 -0.141867 211 48 SH5129 5129 snR11 246-258 + 3' 246 29.894389 147.76234 88.8283645 1.948551666 0.017392 211 49 SH17406 17406 YIL069C_9_232366_231550_INTRON_4_412 3' exon 31.530396 189.603641 31.530396 159.073245 95.3018205 1.979101197 0.067442 211 50 SH9463 9463 RUF2 RUF2 156 173 29.190987 174.269699 101.730343 2.007450509 -0.169372 211 51 SH21800 21800 copy of SH15070 26.930549 162.71246 94.8215045 1.976906842 -0.277365 211 52 SH20820 20820 YKR057W spliced 37.32362 176.446722 106.885171 2.028917456 0.185313 211 53 SH364 364 Asn1 5' flank 28.422992 153.120266 90.771629 1.957950129 -0.116208 211 54 SH2547 2547 Pro2 5' flank 28.305566 160.031518 94.168542 1.973905846 -0.160562 211 55 SH4914 4914 snR9 5' 57.033127 159.838701 108.435914 2.035173144 0.683131 211 56 SH18463 18463 YMR143W_13_551927_552902_INTRON_25_568 intron 28.309672 190.273636 28.309672 162.963964 95.636818 1.980625118 -0.174971 211 57 SH9702 9702 RUF4 RUF4 286 303 26.495212 150.158455 88.3268335 1.946092661 -0.248882 211 58 SH20699 20699 YJL001W spliced 26.629053 139.822194 83.2256235 1.920257057 -0.181881 211 59 SH15338 15338 YAL030W_1_87288_87754_INTRON_103_215 intron 30.653929 187.990351 30.653929 158.336422 94.4951755 1.975409636 0.013471 211 60 SH16122 16122 YDR064W_4_579453_580447_INTRON_22_560 intron 28.861918 184.114891 28.861918 156.252973 92.5574455 1.96641136 -0.100811 211 61 SH20897 20897 YLR306W spliced 30.936505 184.373445 107.654975 2.032034104 -0.118065 211 62 SH17325 17325 YIL004C_9_348502_347943_INTRON_12_142 intron 32.980894 196.07596 32.980894 164.095066 98.53798 1.993603655 0.119942 211 63 SH3837 3837 RNaseP RNaseP 151 163 33.014948 181.473995 107.2444715 2.030374913 -0.009039 211 64 SH8350 8350 snoRNA cluster4 snR53/3' 29.072091 220.086718 29.072091 192.014627 110.543359 2.043532657 -0.275521 211 65 SH2586 2586 Pro2 3' flank 29.023963 135.358438 82.1912005 1.914825324 0.023969 211 66 SH12843 12843 MT COX1 COX1ai1 32.858623 216.083767 32.858623 184.225144 108.5418835 2.035597354 -0.040115 211 67 SH4328 4328 telomerase RNA telomerase 676 695 744.654197 1310.989173 1027.821685 3.011917776 -0.289611 211 68 SH4933 4933 snR9 snR9 71 83 620.678374 937.882207 779.2802905 2.891693692 0.021032 211 69 SH4303 4303 telomerase RNA telomerase 551 570 30.514364 142.115227 86.3147955 1.936085246 0.091471 211 70 SH3340 3340 Thr3 tRNA 46 63 30.346411 143.754234 87.0503225 1.939770384 0.070814 211 71 SH15013 15013 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 28.255157 210.065715 28.255157 182.810558 105.5328575 2.023387698 -0.278897 211 72 SH420 420 Asp1 5' flank 29.971068 148.251087 89.1110775 1.949931695 0.020033 211 73 SH6993 6993 snR60 snR60 46 65 48.688493 207.925878 128.3071855 2.108250979 -0.008515 211 74 SH4334 4334 telomerase RNA telomerase 706 725 29.591125 160.818869 95.204997 1.978659744 -0.072362 211 75 SH8325 8325 snoRNA cluster4 intergenic 29.422748 173.487682 29.422748 145.064934 87.243841 1.940734778 -0.001262 211 76 SH6473 6473 snR45 3' 33.91924 152.763531 93.3413855 1.970074243 0.245085 211 77 SH5490 5490 snR32 snR32 111 127 40.275246 181.993803 111.1345245 2.045848996 0.172509 211 78 SH14303 14303 MT VAR1 includes 5’ processing site VAR1 30.015464 183.382193 30.015464 154.366729 92.1910965 1.96468898 -0.009642 211 79 SH14293 14293 MT VAR1 includes 5’ processing site VAR1 29.055343 182.445789 29.055343 154.390446 91.7228945 1.962477751 -0.077235 211 80 SH1969 1969 Lys2 tRNA 46 60 529.38303 821.795196 675.589113 2.829682642 0.036427 211 81 SH11134 11134 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2556 2571 40.163957 198.102095 119.133026 2.076032173 -0.019398 211 82 SH19382 19382 YPR043W_16_654161_654842_INTRON_3_405 intron 31.009937 186.951258 31.009937 156.941321 93.975629 1.973015241 0.044603 211 83 SH9451 9451 RUF2 RUF2 96 110 27.421714 159.033706 93.22771 1.969545017 -0.221331 211 84 SH7968 7968 snoRNA cluster 2 5' 31.285319 186.214277 31.285319 155.928958 93.6071385 1.971308969 0.068194 211 85 SH20972 20972 YML034W spliced 35.231165 154.770103 95.000634 1.977726504 0.302767 211 86 SH20203 20203 YDR025W spliced 304.153116 519.561943 411.8575295 2.61474701 0.112454 211 87 SH3746 3746 Val4 5' flank 30.040551 158.375899 94.208225 1.974088821 -0.028679 211 88 SH12578 12578 MT_15S MT_15S 32.200298 175.217855 32.200298 144.017557 88.1089275 1.945019915 0.192392 211 89 SH962 962 Gly1 61-72 + 3' flank 61 32.463208 157.543828 95.003518 1.977739688 0.13176 211 90 SH15886 15886 YDL082W_4_308423_309387_INTRON_5_369 intron 38.579912 232.798148 38.579912 195.218236 116.899074 2.067811071 -0.010687 211 91 SH16126 16126 YDR064W_4_579453_580447_INTRON_22_560 intron 31.995411 201.24437 31.995411 170.248959 101.122185 2.004846445 0.025827 211 92 SH13280 13280 MT COX1 Exon 5a 29.262941 178.005164 29.262941 149.742223 89.502582 1.951835564 -0.037696 211 93 SH15701 15701 YBR220C_2_663261_662457_INTRON_302_722 intron 29.460723 187.078263 29.460723 158.61754 94.0391315 1.97330861 -0.070362 211 94 SH13349 13349 MT COX1 COX1-ai5a / intronic 29.642399 195.722244 29.642399 167.079845 98.361122 1.992823474 -0.099709 211 95 SH18251 18251 YML034W_13_209525_212155_INTRON_1921_2046 intron 25.784598 139.557799 25.784598 114.773201 70.2788995 1.846824952 -0.083867 211 96 SH12672 12672 MT tRNA Trp 5' 29.954037 183.599391 29.954037 154.645354 92.2996955 1.965200268 -0.015354 211 97 SH17222 17222 YHR041C_8_189855_189122_INTRON_15_115 intron 28.052338 141.090446 28.052338 114.038108 71.045223 1.851534882 0.094325 211 98 SH20376 20376 YER179W spliced 34.280162 169.168846 101.724504 2.007425581 0.154496 211 99 SH270 270 Arg4 5' flank 32.339506 158.959502 95.649504 1.980682722 0.115534 211 100 SH20639 20639 YHR141C spliced 34.481658 175.322077 104.9018675 2.02078322 0.101228 211 101 SH20911 20911 YLR333C spliced 30.430374 160.187038 95.308706 1.979132573 -0.011133 211 102 SH7306 7306 snR66 snR66 21 36 38.763013 201.392293 120.077653 2.079462191 -0.078348 211 103 SH387 387 Asn1 16-30 16 30 33.622306 147.865485 90.7438955 1.957817419 0.260714 211 104 SH18910 18910 YOL120C_15_94401_93394_INTRON_113_559 intron 27.40732 172.713623 27.40732 146.306303 86.8568115 1.938803882 -0.157346 212 2 SH3803 3803 RNaseP 5' flank 47.883386 201.335209 124.6092975 2.095550448 0.052716 212 3 SH13281 13281 MT COX1 Exon 5a 28.852097 202.045531 28.852097 174.193434 101.5227655 2.00656344 -0.190757 212 4 SH1629 1629 Leu5 tRNA 11 23 81.28226 243.203655 162.2429575 2.210165854 0.075169 212 5 SH10026 10026 RUF6 5' 36.446564 184.414598 110.430581 2.043089357 0.073059 212 6 SH9984 9984 RUF5-1 RUF5-1 726 747 29.098862 170.628401 99.8636315 1.999407355 -0.155141 212 7 SH9190 9190 snR7 U5 RNA 3' 29.121744 126.748408 77.935076 1.891732963 0.083508 212 8 SH3364 3364 Thr4 5' flank 31.205512 158.720512 94.963012 1.977554481 0.048519 212 9 SH14269 14269 MT VAR1 includes 5’ processing site VAR1 31.112693 193.075574 31.112693 162.962881 97.037787 1.986940884 0.017967 212 10 SH8293 8293 snoRNA cluster4 intergenic 51.981869 296.946105 51.981869 245.964236 148.9730525 2.173107717 -0.32514 212 11 SH7777 7777 snoRNA cluster1 intergenic 39.069928 206.855197 39.069928 168.785269 103.9275985 2.016730892 0.314999 212 12 SH2793 2793 Pro6 tRNA-intron/exon 56 72 82.424836 288.569585 185.4972105 2.268337383 -0.246452 212 13 SH21334 21334 YPR063C spliced 34.252756 152.256956 93.254856 1.969671456 0.266751 212 14 SH8956 8956 snR17a / U3a U3a 66 83 29.845964 182.047807 105.9468855 2.025088194 -0.172255 212 15 SH11280 11280 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3286 3305 132.122644 309.224418 220.673531 2.343750244 0.089051 212 16 SH14485 14485 MT 21S rRNA 21S rRNA3 37.153477 227.616599 37.153477 191.463122 114.3082995 2.058077764 0.00496 212 17 SH20870 20870 YLR128W spliced 28.98034 179.972901 104.4766205 2.019019116 -0.215629 212 18 SH11334 11334 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3556 3574 66.092157 218.793492 142.4428245 2.153640577 0.111187 212 19 SH8815 8815 LSR1 / U2 RNA U2 716 733 34.548723 183.405449 108.977086 2.037335191 0.027494 212 20 SH4847 4847 snR8 snR8 16 32 34.556471 159.128539 96.842505 1.986066015 0.238405 212 21 SH539 539 Cys1 5' flank - tRNA11 5' flank 11 182.924481 370.639945 276.782213 2.442138177 0.106193 212 22 SH1506 1506 Leu3 tRNA 1 13 438.814869 772.110342 605.4626055 2.782087325 -0.096145 212 23 SH6444 6444 snR45 snR45 66 78 29.234588 171.894907 100.5647475 2.002445768 -0.152642 212 24 SH1915 1915 Lys1 tRNA 31 50 356.631759 565.2573 460.9445295 2.663648665 0.164062 212 25 SH12226 12226 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.816281 189.76454 35.816281 154.948259 95.38227 1.979467654 0.33239 212 26 SH11649 11649 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5131 5149 32.043813 148.462033 90.252923 1.955461276 0.15766 212 27 SH16139 16139 YDR092W_4_629869_630598_INTRON_31_298 intron 42.524992 245.526304 42.524992 204.001312 123.263152 2.090833269 -0.052174 212 28 SH8330 8330 snoRNA cluster4 intergenic/snR53 28.346545 170.089872 28.346545 142.743327 85.544936 1.932194306 -0.067168 212 29 SH11338 11338 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3576 3589 45.044669 215.23224 130.1384545 2.114405645 -0.136294 212 30 SH12563 12563 MT_15S MT_15S 32.729667 228.936245 32.729667 197.206578 114.9681225 2.060577439 -0.15973 212 31 SH5957 5957 snR36 snR36 241 257 36.996596 181.101122 109.048859 2.037621126 0.123144 212 32 SH10746 10746 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 616 629 43.376843 207.036676 125.2067595 2.097627776 -0.072925 212 33 SH8908 8908 LSR1 / U2 RNA 3' 26.732278 115.626678 71.179478 1.852354799 -0.016051 212 34 SH8267 8267 snoRNA cluster4 snR67 37.284655 233.948289 37.284655 197.663634 117.4741445 2.069942291 -0.06196 212 35 SH5756 5756 snR35 5' 99.515661 214.206738 156.8611995 2.195515532 0.510946 212 36 SH17816 17816 YKR057W_11_551293_551878_INTRON_25_346 intron 31.141804 207.941177 31.141804 177.799373 104.4705885 2.018994041 -0.068812 212 37 SH13573 13573 MT COX1 Exon 6 31.218116 193.53464 31.218116 163.316524 97.26732 1.98796695 0.022088 212 38 SH3056 3056 Ser3 5' flank 31.290055 186.181117 108.735586 2.036371699 -0.116532 212 39 SH3457 3457 Trp1 3' flank 30.291876 184.580028 107.435952 2.031149637 -0.158567 212 40 SH7178 7178 snR64 5' 31.395537 143.673561 87.534549 1.942179498 0.141803 212 41 SH11831 11831 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6041 6054 32200.50446 37398.79712 34799.65079 4.541574886 -0.705207 212 42 SH15348 15348 YBL018C_2_186436_185960_INTRON_48_122 intron 33.501644 192.186987 33.501644 159.685343 96.5934935 1.984947873 0.176904 212 43 SH21545 21545 copy of SH4254 31.294008 174.820105 103.0570565 2.013077734 -0.042529 212 44 SH10172 10172 RUF6 RUF6 706 718 37.4707 180.795093 109.1328965 2.037955682 0.135836 212 45 SH10299 10299 RUF7 RUF7 106 127 30.933913 158.542893 94.738403 1.97652606 0.031284 212 46 SH12520 12520 MT_ORF6 + ORF7 (hypothetical) ORF6/7 36.886921 211.921491 36.886921 176.03457 106.4607455 2.027189503 0.17516 212 47 SH10407 10407 RUF8 5' 30.343114 167.061265 98.7021895 1.994326787 -0.05409 212 48 SH2594 2594 Pro3 5' flank 464.57763 640.690532 552.634081 2.742437664 0.281285 212 49 SH15578 15578 YBR084C-A_2_415219_414144_INTRON_3_508 intron 27.629975 181.487493 27.629975 154.857518 91.2437465 1.960203109 -0.184572 212 50 SH11925 11925 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6511 6526 31.257596 186.265077 108.7613365 2.036474536 -0.118536 212 51 SH17095 17095 YHL001W_8_104270_105084_INTRON_130_527 intron 44.655216 217.202219 44.655216 173.547003 109.1011095 2.037829167 0.346634 212 52 SH20830 20830 YKR094C spliced 28.681364 151.556224 90.118794 1.954815371 -0.089124 212 53 SH1577 1577 Leu4 tRNA-intron/exon 56 73 62.342451 194.518028 128.4302395 2.108667292 0.311797 212 54 SH2084 2084 Lys4 86-96 + 3' flank 86 102 62.059326 216.770225 139.4147755 2.144308804 0.079084 212 55 SH3529 3529 Tyr2 5' flank 30.206521 191.154339 110.68043 2.044070838 -0.203234 212 56 SH13668 13668 MT ATP6 ATP6 28.323619 173.141971 28.323619 145.818352 87.0709855 1.93987346 -0.085482 212 57 SH1685 1685 Leu6 5' flank - tRNA7 7 36.115078 157.444187 96.7796325 1.985783969 0.331685 212 58 SH8695 8695 LSR1 / U2 RNA U2 116 135 81.113102 271.921036 176.517069 2.246786708 -0.14583 212 59 SH3085 3085 Ser3 3' flank 28.709726 164.047448 96.378587 1.983980555 -0.151218 212 60 SH9644 9644 RUF4 5' - 8 -4 8 30.806141 183.666851 107.236496 2.030342615 -0.122058 212 61 SH14003 14003 MT COB intronic 25.057916 143.748582 25.057916 119.690666 72.374291 1.859584322 -0.177515 212 62 SH21642 21642 copy of SH8352 57.671427 254.479632 156.0755295 2.193334817 -0.312703 212 63 SH12429 12429 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.986918 185.617328 34.986918 151.63041 93.308664 1.969921971 0.310585 212 64 SH7634 7634 snR189 3' 45.838742 162.850314 104.344528 2.018469679 0.506107 212 65 SH20906 20906 YLR316C spliced 32.963652 179.475732 106.219692 2.026205038 0.007782 212 66 SH2162 2162 Met2 5' flank 32.884679 207.253752 120.0692155 2.079431673 -0.253985 212 67 SH6443 6443 snR45 snR45 61 73 32.776408 173.258208 103.017308 2.012910197 0.053108 212 68 SH6117 6117 snR39B 5' 32.640067 155.162934 93.9015005 1.972672532 0.157389 212 69 SH8536 8536 snR19 / U1 RNA U1 176 195 28.60522 154.444661 91.5249405 1.961539455 -0.109922 212 70 SH12151 12151 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7641 7659 34.211565 207.476577 120.844071 2.082225347 -0.22834 212 71 SH9262 9262 snR6 / U6 RNA 3' 30.160174 151.463582 90.811878 1.958142657 0.01572 212 72 SH2641 2641 Pro3 3' flank 29.946801 148.73778 89.3422905 1.951057082 0.015697 212 73 SH5951 5951 snR36 snR36 211 228 41.064384 169.029103 105.0467435 2.021382594 0.347188 212 74 SH1811 1811 Leu8 tRNA 81 96 37.024696 166.671468 101.848082 2.007952855 0.271855 212 75 SH1526 1526 Leu3 101-114 + 3' flank 101 38.663582 176.105962 107.384772 2.030942699 0.21524 212 76 SH18474 18474 YMR143W_13_551927_552902_INTRON_25_568 intron 34.753353 208.708404 34.753353 174.955051 104.854202 2.020585839 0.114166 212 77 SH4843 4843 snR8 5' - 15 15 34.621072 192.682487 113.6517795 2.05557624 -0.058811 212 78 SH6989 6989 snR60 snR60 26 44 34.536934 171.553572 103.045253 2.01302799 0.139814 212 79 SH11735 11735 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5561 5576 16246.35485 9373.28052 12809.81768 4.107542949 0.607275 212 80 SH5752 5752 snR35 5' 30.826312 157.539546 94.182929 1.973972192 0.029196 212 81 SH17928 17928 YLR078C_12_286560_285737_INTRON_4_92 3' exon 36.406189 225.309252 36.406189 189.903063 113.154626 2.053672314 0.008403 212 82 SH3330 3330 Thr3 5' flank - tRNA12 12 34.654925 153.546022 94.1004735 1.973591809 0.280007 212 83 SH16588 16588 YFL034C-A_6_64931_64242_INTRON_13_333 intron 31.080549 172.304451 31.080549 142.223902 86.6522255 1.937779721 0.129092 212 84 SH186 186 Arg2 46-62 46 62 41.514226 169.007465 105.2608455 2.022266854 0.355174 212 85 SH3165 3165 Ser5 5' flank 25.818483 131.365893 78.592188 1.89537938 -0.193755 212 86 SH4137 4137 SRP RNA SRP RNA 576 588 31.66508 175.326023 103.4955515 2.014921683 -0.023429 212 87 SH4416 4416 telomerase RNA telomerase 1116 1132 31.917206 152.121626 92.019416 1.963879473 0.129718 212 88 SH12445 12445 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.878396 211.92858 39.878396 173.050184 106.46429 2.027203962 0.27525 212 89 SH7921 7921 snoRNA cluster1 snR72 30.526884 182.191686 30.526884 152.664802 91.595843 1.961875764 0.034401 212 90 SH18998 18998 YOR122C_15_552886_552297_INTRON_14_222 intron 30.786757 182.124466 30.786757 152.337709 91.562233 1.961716376 0.053731 212 91 SH17999 17999 YLR287C-A_12_713158_712537_INTRON_4_433 intron 33.007591 227.312775 33.007591 195.305184 114.1563875 2.057500217 -0.133252 212 92 SH3931 3931 RNase MRP RNaseMRP 71 87 34.254193 159.502344 96.8782685 1.986226368 0.219597 212 93 SH20308 20308 YER003C spliced 33.496668 191.669426 112.583047 2.051472998 -0.083922 212 94 SH13748 13748 MT COB Exon1 29.689968 176.218347 29.689968 147.528379 88.6091735 1.947478686 0.004436 212 95 SH21385 21385 Phe1_5 spliced 246.213042 467.864357 357.0386995 2.552715292 0.037754 212 96 SH9313 9313 RUF1 RUF1 141 158 32.029212 160.328287 96.1787495 1.983079126 0.0888 212 97 SH15557 15557 YBR082C_2_407127_406586_INTRON_48_142 intron 32.160175 179.329275 32.160175 148.1691 90.1646375 1.955036241 0.166782 212 98 SH18074 18074 YLR344W_12_819312_820142_INTRON_20_466 intron 32.269368 238.69697 32.269368 207.427602 119.848485 2.078632549 -0.269175 212 99 SH20752 20752 YJR021C spliced 32.358021 199.947881 116.152951 2.065030248 -0.196705 212 100 SH21119 21119 YNL112W spliced 30.368754 184.627786 107.49827 2.031401475 -0.154092 212 101 SH13130 13130 MT COX1 COX1ai3 36.615499 223.940609 36.615499 188.32511 112.4703045 2.051037871 0.030631 212 102 SH13129 13129 MT COX1 COX1ai3 26.313808 168.741776 26.313808 143.427968 84.870888 1.928758746 -0.227475 212 103 SH17972 17972 YLR185W_12_522665_523290_INTRON_8_366 3' exon 28.389607 198.528442 28.389607 171.138835 99.764221 1.998974816 -0.20877 212 104 SH972 972 Gly1 3' flank 30.468373 180.900879 105.684626 2.024011815 -0.127251 213 2 SH13840 13840 MT COB Cytbi2 28.724597 188.01619 28.724597 160.291593 94.508095 1.975469009 -0.131381 213 3 SH20514 20514 YGR029W spliced 30.944152 148.242592 89.593372 1.952275882 0.086389 213 4 SH18976 18976 YOR096W_15_505793_506766_INTRON_145_545 intron 31.041213 221.876644 31.041213 191.835431 111.438322 2.047034564 -0.176582 213 5 SH17091 17091 YHL001W_8_104270_105084_INTRON_130_527 intron 3612.7527 7554.238722 3612.7527 3942.486022 3777.619361 3.577218196 0.036948 213 6 SH19640 19640 RNA14 2.2 31.179361 167.020791 99.100076 1.996073988 -0.003021 213 7 SH21167 21167 YNL302C spliced 33.312214 176.419227 104.8657205 2.020633545 0.049368 213 8 SH18653 18653 YNL112W_14_413636_416278_INTRON_1274_2275 intron 26.933058 150.50168 26.933058 124.568622 75.75084 1.879387453 -0.062802 213 9 SH4205 4205 telomerase RNA telomerase 61 83 28.9516 128.998052 78.974826 1.897488678 0.056877 213 10 SH5791 5791 snR35 snR35 141 157 28.803793 136.78457 82.7941815 1.917999817 -0.000236 213 11 SH14753 14753 MT ORF11; tRNA Leu; tRNA Gln ORF11 28.603947 203.496001 28.603947 175.892054 102.2480005 2.009654824 -0.216764 213 12 SH16337 16337 YDR500C_4_1450856_1450201_INTRON_8_396 5' exon 30.421897 188.992885 30.421897 159.570988 94.9964425 1.977707342 -0.00859 213 13 SH5 5 Ala1 5' flank 30.129562 158.349065 94.2393135 1.974232114 -0.022401 213 14 SH321 321 Arg5 5' flank 31.843534 157.176179 94.5098565 1.975477104 0.098105 213 15 SH1713 1713 Leu6 3' flank 27.516538 137.118125 82.3173315 1.915491283 -0.098271 213 16 SH7693 7693 snoRNA cluster1 intergenic 35.19038 184.665031 35.19038 150.474651 92.8325155 1.967700119 0.329199 213 17 SH18899 18899 YOL120C_15_94401_93394_INTRON_113_559 intron 27.037459 164.521502 27.037459 138.484043 82.760751 1.917824423 -0.142608 213 18 SH4413 4413 telomerase RNA telomerase 1101 1118 28.840203 152.111334 90.4757685 1.956532281 -0.080611 213 19 SH4170 4170 SRP RNA 3' 107.667936 253.351378 180.509657 2.256500441 0.260315 213 20 SH20854 20854 YLR061W spliced 32.69531 177.409393 105.0523515 2.021405778 0.017531 213 21 SH5293 5293 snR30 snR30 316 330 325.457012 440.600112 383.028562 2.58323116 0.471367 213 22 SH3863 3863 RNaseP RNaseP 281 293 31.06316 159.894767 95.4789635 1.979907696 0.033059 213 23 SH16714 16714 YGL031C_7_438393_437938_INTRON_1_456 intron 29.330064 202.387593 29.330064 174.057529 101.6937965 2.007294461 -0.159249 213 24 SH10811 10811 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 941 960 320.274316 605.187065 462.7306905 2.665328305 -0.080569 213 25 SH12686 12686 MT tRNA Trp 3' 31.877474 180.971697 31.877474 150.094223 90.9858485 1.95897385 0.138002 213 26 SH6346 6346 snR43 5' 30.087873 172.535658 101.3117655 2.005659884 -0.10264 213 27 SH5437 5437 snR31 3' 28.237279 141.483024 84.8601515 1.928703803 -0.068391 213 28 SH8066 8066 snoRNA cluster 2 snR61 30.453792 170.449941 30.453792 140.996149 85.7249705 1.933107344 0.093447 213 29 SH1322 1322 Ile3 5' flank - tRNA7 7 30.587235 162.010152 96.2986935 1.983620395 -0.009631 213 30 SH8072 8072 snoRNA cluster 2 snR61 74.737276 362.811072 74.737276 289.073796 181.905536 2.259845916 -0.341503 213 31 SH9994 9994 RUF5-1 3' 32.880279 189.301042 111.0906605 2.045677549 -0.08519 213 32 SH15462 15462 YBL087C_2_60732_59815_INTRON_43_546 intron 30.880128 202.607269 30.880128 172.727141 101.8036345 2.007763283 -0.055181 213 33 SH21676 21676 copy of SH9839 28.866691 142.976772 85.9217315 1.93410302 -0.030146 213 34 SH14462 14462 MT 21S rRNA 21S rRNA3 28.942939 210.68446 28.942939 182.741521 105.84223 2.024658981 -0.233553 213 35 SH1204 1204 Ile1 5' flank 31.126263 198.128584 114.6274235 2.059288531 -0.227773 213 36 SH19455 19455 CYC1 26.978018 120.608567 73.7932925 1.868016888 -0.032519 213 37 SH20957 20957 YML024W spliced 39.777265 195.90183 117.8395475 2.071291066 0.00032 213 38 SH5907 5907 snR36 5' - 8 -9 8 33.473001 194.451176 113.9620885 2.0567604 -0.109084 213 39 SH5419 5419 snR31 snR31 161 177 37.802704 158.607943 98.2053235 1.992135031 0.380447 213 40 SH5959 5959 snR36 snR36 251 265 29.319165 178.724369 104.021767 2.017124227 -0.186826 213 41 SH20023 20023 YBR119W spliced 33.596897 188.550326 111.0736115 2.045610893 -0.052657 213 42 SH4999 4999 snR10 snR10 26 42 29.308965 175.332681 102.320823 2.009964025 -0.168011 213 43 SH14424 14424 MT 21S rRNA 21S rRNA3 132.886054 481.556997 132.886054 349.670943 241.2784985 2.382518622 -0.132188 213 44 SH4004 4004 SRP RNA 5' 33.33177 169.535117 101.4334435 2.006181169 0.106588 213 45 SH21321 21321 YPR028W spliced 33.112812 206.707461 119.9101365 2.078855897 -0.243346 213 46 SH11450 11450 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4136 4153 37.002357 187.846651 112.424504 2.05086098 0.043607 213 47 SH292 292 Arg4 56-68 56 68 29.40619 168.878899 99.1425445 1.996260061 -0.124988 213 48 SH16151 16151 YDR092W_4_629869_630598_INTRON_31_298 intron/exon 31.109895 187.433266 31.109895 157.323371 94.216633 1.97412758 0.049312 213 49 SH13799 13799 MT COB intronic 29.731813 181.328483 29.731813 152.59667 91.1642415 1.959824523 -0.020004 213 50 SH19696 19696 Negative Control 31.36722 171.923683 101.6454515 2.007087949 -0.021187 213 51 SH10214 10214 RUF6 RUF6 916 935 27.084707 158.493437 92.789072 1.967496831 -0.244637 213 52 SH1171 1171 His1 3' flank 25.849328 116.297083 71.0732055 1.851705903 -0.089742 213 53 SH8119 8119 snoRNA cluster 3; snR41 32.417706 223.165986 32.417706 191.74828 112.082993 2.04953972 -0.123838 213 54 SH4087 4087 SRP RNA SRP RNA 326 338 32.256792 181.921484 107.089138 2.029745423 -0.041025 213 55 SH896 896 Glu3 5' flank - tRNA10 10 28.34767 150.155009 89.2513395 1.950614743 -0.106533 213 56 SH19649 19649 SIR1 2.2 26.447767 168.643193 97.54548 1.98920715 -0.343908 213 57 SH2028 2028 Lys3 86-96 + 3' flank 86 102 34.240794 148.196389 91.2185915 1.960083362 0.293562 213 58 SH6249 6249 snR42 snR42 26 42 28.581556 148.597742 88.589649 1.947382981 -0.081103 213 59 SH7003 7003 snR60 96-104 + 3' 96 28.727827 174.513147 101.620487 2.006981272 -0.200689 213 60 SH18569 18569 YNL012W_14_609682_611661_INTRON_106_189 intron 26.912372 203.67167 26.912372 177.759298 102.335835 2.010027738 -0.350415 213 61 SH7239 7239 snR65 5' 27.015804 130.800766 78.908285 1.897122604 -0.096951 213 62 SH4668 4668 snR3 3' 32.988587 156.45187 94.7202285 1.976442737 0.168838 213 63 SH12372 12372 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.024891 207.103077 33.024891 175.078186 104.0515385 2.017248506 0.051867 213 64 SH6708 6708 snR49 snR49 66 82 29.076099 126.132538 77.6043185 1.889885889 0.084319 213 65 SH15822 15822 YDL064W_4_337486_338069_INTRON_39_148 intron 35.932655 208.160317 35.932655 173.227662 104.5801585 2.019449296 0.170885 213 66 SH7584 7584 snR189 5' - 15 -9 15 32.899334 179.415433 106.1573835 2.025950206 0.00601 213 67 SH191 191 Arg2 71-73 + 3' flank 71 3' flank 28.8779 150.894345 89.8861225 1.953692646 -0.071393 213 68 SH14072 14072 MT COB Cytbi4 30.705168 189.108236 30.705168 159.403068 95.054118 1.977970936 0.011498 213 69 SH495 495 Asp2 tRNA 36 48 36.370515 177.713704 107.0421095 2.029554659 0.142251 213 70 SH19802 19802 Negative Control 29.390663 179.939155 104.664909 2.0198011 -0.189156 213 71 SH16860 16860 YGL187C_7_150529_149708_INTRON_1_342 intron 30.137626 182.441053 30.137626 153.303427 91.7205265 1.962466539 0.004387 213 72 SH20172 20172 YDL137W spliced 35.609926 163.507566 99.558746 1.998079418 0.257524 213 73 SH10488 10488 RUF8 RUF8 366 382 176.507613 310.056406 243.2820095 2.386109994 0.38803 213 74 SH16370 16370 YER003C_5_159117_157735_INTRON_32_124 5' exon 31.320539 182.342143 31.320539 152.021604 91.6710715 1.962232308 0.091087 213 75 SH1635 1635 Leu5 tRNA-intron 41 58 32.976017 163.232866 98.1044415 1.99168867 0.125018 213 76 SH14734 14734 MT tRNA cys; tRNA his tRNA his 32.802428 175.50884 32.802428 143.706412 88.25442 1.945736465 0.232593 213 77 SH15563 15563 YBR084C-A_2_415219_414144_INTRON_3_508 5' exon 32.679586 199.818926 32.679586 168.13934 100.409463 2.001774644 0.078048 213 78 SH20355 20355 YER117W spliced 30.767722 151.389567 91.0786445 1.959416558 0.057505 213 79 SH14144 14144 MT COB intronic 30.746354 178.236901 30.746354 148.490547 89.6184505 1.952397431 0.071727 213 80 SH21352 21352 YPR132W spliced 41.833472 184.850963 113.3422175 2.054391705 0.163258 213 81 SH4902 4902 snR9 5' 30.823866 148.172711 89.4982885 1.95181473 0.078688 213 82 SH15706 15706 YBR220C_2_663261_662457_INTRON_302_722 intron 29.069642 191.659065 29.069642 163.589423 96.3295325 1.983759453 -0.123098 213 83 SH206 206 Arg2 3' flank 32.902831 163.936601 98.419716 1.993082107 0.116493 213 84 SH9447 9447 RUF2 RUF2 76 88 53.704235 229.107335 141.405785 2.150467177 -0.149428 213 85 SH11159 11159 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S/ITS1 2681 2703 31.410161 171.187794 101.2989775 2.005605062 -0.014271 213 86 SH9520 9520 RUF3 5' - 4 -14 4 29.75127 180.971874 105.361572 2.022682242 -0.172173 213 87 SH13479 13479 MT COX1 intronic 28.089919 166.059813 28.089919 138.969894 83.5299065 1.921841995 -0.065444 213 88 SH20037 20037 YBR186W spliced 30.253734 170.133042 100.193388 2.000839062 -0.078116 213 89 SH6160 6160 snR39B 3' 28.585603 183.088631 105.837117 2.024638001 -0.258705 213 90 SH674 674 Gln3 5' flank 30.792924 141.655128 86.224026 1.935628297 0.113044 213 91 SH5252 5252 snR30 snR30 111 126 31.055189 147.397682 89.2264355 1.950493544 0.098452 213 92 SH19763 19763 Negative Control 31.302647 170.472604 100.8876255 2.003837901 -0.016427 213 93 SH2595 2595 Pro3 5' flank 505.949922 883.7829 694.866411 2.841901319 -0.139003 213 94 SH19963 19963 YBL059W spliced 31.73217 184.632522 108.182346 2.034156395 -0.08563 213 95 SH17403 17403 YIL069C_9_232366_231550_INTRON_4_412 intron 31.908244 196.702155 31.908244 165.793911 98.8510775 1.994981408 0.047668 213 96 SH1529 1529 Leu3 3' flank 27.98834 143.305418 85.646879 1.932711542 -0.097014 213 97 SH12447 12447 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.250129 198.300009 35.250129 164.04988 99.6500045 1.998477323 0.239771 213 98 SH5607 5607 snR34 5' 40.502875 175.783381 108.143128 2.033998927 0.252113 213 99 SH7498 7498 snR71 3' 28.242896 165.665729 96.9543125 1.986567131 -0.193192 213 100 SH10934 10934 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1556 1573 51.06336 169.232747 110.1480535 2.041976827 0.484639 213 101 SH9227 9227 snR6 / U6 RNA U6 6 20 30.379198 168.260476 99.319837 1.997035998 -0.059135 213 102 SH3314 3314 Thr3 5' flank 28.326044 130.878162 79.602103 1.900924541 -0.00004 213 103 SH2854 2854 Pro7 tRNA 76 88 53.421563 190.283416 121.8524895 2.085834406 0.250146 213 104 SH7470 7470 snR71 5' 28.305829 120.632222 74.4690255 1.871975671 0.066052 214 2 SH5197 5197 snR13 3' 32.964213 172.76273 102.8634715 2.012261177 0.066699 214 3 SH938 938 Gly1 5' flank 30.928279 172.144249 101.536264 2.00662118 -0.048834 214 4 SH21707 21707 copy of SH11082 14546.65621 9457.010546 12001.83338 4.079247593 0.4501 214 5 SH9222 9222 snR6 / U6 RNA 5' 39.620731 168.884056 104.2523935 2.018086035 0.323737 214 6 SH18482 18482 YMR194W_13_651144_651909_INTRON_17_479 5' exon 94.622467 387.373402 94.622467 293.750935 194.186701 2.288219484 -0.148297 214 7 SH15947 15947 YDL125C_4_239605_239018_INTRON_98_208 intron 31.148592 234.872569 31.148592 204.723977 117.9362845 2.071647442 -0.282172 214 8 SH19212 19212 YPL081W_16_404945_406039_INTRON_8_508 intron 31.102176 204.95442 31.102176 174.852244 102.97721 2.012741121 -0.054211 214 9 SH19175 19175 YPL079W_16_406631_407534_INTRON_12_432 intron 39.451183 266.087551 39.451183 227.636368 133.5437755 2.12562365 -0.346619 214 10 SH182 182 Arg2 26-40 26 40 45.571664 203.972043 124.7718535 2.096116627 -0.008004 214 11 SH20534 20534 YGR148C spliced 243.399072 488.074051 365.7365615 2.563168378 -0.048231 214 12 SH17383 17383 YIL069C_9_232366_231550_INTRON_4_412 5' exon 32.442121 237.257482 32.442121 205.815361 119.128741 2.076016552 -0.248403 214 13 SH16932 16932 YGR027C_7_534779_534126_INTRON_1_312 5' exon 30.096489 202.195588 30.096489 173.099099 101.597794 2.006884278 -0.105418 214 14 SH2268 2268 Phe2 5' flank 33.859421 187.923836 110.8916285 2.044898761 -0.037717 214 15 SH2090 2090 Lys4 3' flank 29.514385 193.743893 111.629139 2.047777575 -0.256404 214 16 SH18889 18889 YOL047C_15_242745_241612_INTRON_244_306 3' exon 29.250946 177.91525 29.250946 149.664304 89.457625 1.951617364 -0.038125 214 17 SH18864 18864 YNR053C_14_723108_721117_INTRON_811_1341 intron 384.3455 864.985048 384.3455 481.639548 432.992524 2.636480398 0.522455 214 18 SH4909 4909 snR9 5' 88.607301 190.546954 139.5771275 2.144814256 0.640456 214 19 SH16486 16486 YER102W_5_362729_363698_INTRON_1_360 intron 28.833706 208.33076 28.833706 180.497054 104.66538 2.019803055 -0.228066 214 20 SH15418 15418 YBL059W_2_110555_111205_INTRON_287_355 intron 32.80365 193.615278 32.80365 161.811628 97.307639 1.988146935 0.124105 214 21 SH1341 1341 Ile3 tRNA-intron/exon 86 102 30.971125 180.097706 105.5344155 2.023394109 -0.092135 214 22 SH17550 17550 YJL189W_10_75932_76473_INTRON_7_392 5' exon 27.210697 219.084122 27.210697 192.873425 110.042061 2.041558716 -0.40375 214 23 SH20883 20883 YLR211C spliced 28.43727 148.561336 88.499303 1.94693985 -0.091571 214 24 SH19785 19785 Negative Control 29.696465 193.258922 111.4776935 2.047187974 -0.242361 214 25 SH13131 13131 MT COX1 COX1ai3 31.982134 204.282131 31.982134 173.299997 102.6410655 2.011321152 0.007004 214 26 SH5658 5658 snR34 snR34 211 227 44.577493 227.658782 136.1181375 2.133915998 -0.268436 214 27 SH3398 3398 Thr4 3' flank 30.351652 161.254056 95.802854 1.981378447 -0.021887 214 28 SH21614 21614 copy of SH7315 30.503832 159.46052 94.982176 1.977642115 -0.002447 214 29 SH19363 19363 YPR028W_16_623522_624197_INTRON_52_184 intron 30.629076 192.145022 30.629076 162.515946 96.572511 1.984853524 -0.009319 214 30 SH1917 1917 Lys1 tRNA 41 57 12404.76531 15161.6835 13783.22441 4.139350827 -0.507046 214 31 SH741 741 Gln4 5' flank 32.929984 185.332639 109.1313115 2.037949374 -0.04763 214 32 SH8148 8148 snoRNA cluster 3; intergenic 31.977325 187.667323 31.977325 156.689998 94.3336615 1.974666692 0.109091 214 33 SH17556 17556 YJL189W_10_75932_76473_INTRON_7_392 intron 33.12525 200.75524 33.12525 168.62999 100.87762 2.003794827 0.100409 214 34 SH13472 13472 MT COX1 intronic 28.989758 190.833402 28.989758 162.843644 95.916701 1.981894233 -0.125107 214 35 SH665 665 Gln2 3' flank 29.065346 182.07967 105.572508 2.023550839 -0.221978 214 36 SH18319 18319 YML085C_13_99400_97941_INTRON_26_141 intron 29.135433 161.725968 29.135433 133.590535 81.362984 1.910426868 0.042287 214 37 SH19850 19850 Negative Control 31.328427 180.352404 105.8404155 2.024651536 -0.072128 214 38 SH12762 12762 MT COX1 COX1ai1 115.24729 415.793036 115.24729 301.545746 208.396518 2.318890458 -0.003231 214 39 SH5561 5561 snR33 snR33 91 107 70.255892 266.910755 168.5833235 2.226814611 -0.239974 214 40 SH8068 8068 snoRNA cluster 2 snR61 35.771352 200.040438 35.771352 165.269086 100.520219 2.002253426 0.24486 214 41 SH3833 3833 RNaseP RNaseP 131 146 32.571911 153.070761 92.821336 1.967647815 0.166818 214 42 SH17042 17042 YGR183C_7_859471_859058_INTRON_4_216 intron 29.341036 188.001058 29.341036 159.660022 94.500529 1.97543424 -0.084117 214 43 SH4822 4822 snR5 3' 27.143605 134.705815 80.92471 1.908081152 -0.111625 214 44 SH7636 7636 snR189 3' 28.087826 147.764762 87.926294 1.944118768 -0.113422 214 45 SH20750 20750 YJR021C spliced 35.297742 194.533197 114.9154695 2.060378496 -0.065936 214 46 SH6357 6357 snR43 snR43 26 42 39.206706 175.562826 107.384766 2.030942675 0.231836 214 47 SH16504 16504 YER117W_5_396765_397649_INTRON_43_513 intron 32.590807 209.16044 32.590807 177.569633 105.08022 2.021520973 0.012173 214 48 SH82 82 Ala2 46-61 46 61 61.12071 180.211047 120.6658785 2.081584479 0.462244 214 49 SH15224 15224 MT COX3 cox3 27.807594 206.285778 27.807594 179.478184 103.642889 2.01553951 -0.290301 214 50 SH18651 18651 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.48128 166.322307 27.48128 139.841027 83.6611535 1.922523848 -0.116449 214 51 SH13725 13725 MT COB 5' 29.152408 199.542318 29.152408 171.38991 100.271159 2.001176035 -0.154933 214 52 SH8147 8147 snoRNA cluster 3; intergenic 26.909089 162.456222 26.909089 136.547133 81.728111 1.912371461 -0.140723 214 53 SH5461 5461 snR32 5' 26.699084 145.525041 86.1120625 1.935063991 -0.208313 214 54 SH7871 7871 snoRNA cluster1 snR73 69.461253 318.890587 69.461253 250.429334 159.9452935 2.203971465 -0.122598 214 55 SH3766 3766 Val4 tRNA 56 70 28.421927 176.625913 102.52392 2.010825203 -0.232928 214 56 SH21885 21885 copy of SH18600 30.362578 154.200603 92.2815905 1.965115071 0.015093 214 57 SH10609 10609 RUF8 3' 30.443053 133.258538 81.8507955 1.913022905 0.136689 214 58 SH1511 1511 Leu3 tRNA-exon/intron 26 40 42.280274 210.638079 126.4591765 2.101950349 -0.127997 214 59 SH21806 21806 copy of SH15281 30.715987 186.69636 108.7061735 2.036254209 -0.144159 214 60 SH11522 11522 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4496 4514 251.05887 447.345203 349.2020365 2.543076768 0.137485 214 61 SH13943 13943 MT COB Cytbi3 27.02519 193.990244 27.02519 167.965054 97.495122 1.988982887 -0.295822 214 62 SH7381 7381 snR68 126-136 + 3' 126 27.085318 135.811861 81.4485895 1.910883568 -0.122823 214 63 SH4144 4144 SRP RNA SRP RNA 611 623 38.983575 205.540372 122.2619735 2.087291402 -0.121534 214 64 SH21127 21127 YNL130C spliced 36.986033 187.40898 112.1975065 2.049983205 0.048375 214 65 SH8342 8342 snoRNA cluster4 snR53 32.978113 210.617762 32.978113 178.639649 105.808881 2.024522121 0.016187 214 66 SH3027 3027 Ser2 3' flank 36.847055 186.822545 111.8348 2.048576965 0.052538 214 67 SH11769 11769 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5731 5748 50.548668 216.169227 133.3589475 2.125022159 -0.068191 214 68 SH5190 5190 snR13 106-124 + 3' 106 28.742768 129.406138 79.074453 1.898036196 0.03937 214 69 SH20926 20926 YLR367W spliced 32.472267 158.239109 95.355688 1.979346604 0.127808 214 70 SH4371 4371 telomerase RNA telomerase 891 907 34.191127 201.682143 117.936635 2.071648732 -0.167072 214 71 SH20213 20213 YDR064W spliced 33.930777 178.351904 106.1413405 2.025884568 0.053022 214 72 SH21028 21028 YMR116C spliced 39.372158 190.946103 115.1591305 2.061298377 0.051884 214 73 SH14082 14082 MT COB Cytbi4 33.367803 210.319091 33.367803 177.951288 105.6595455 2.023908738 0.036774 214 74 SH20028 20028 YBR181C spliced 42.496841 189.599202 116.0480215 2.064637741 0.11474 214 75 SH11709 11709 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5431 5446 114.195319 244.796627 179.495973 2.25405471 0.383281 214 76 SH19578 19578 AEP2/ATP13 0.6 56.91418 227.990586 142.452383 2.153669719 -0.094985 214 77 SH2008 2008 Lys3 5' flank - tRNA2 2 38.127994 173.652146 105.89007 2.024855235 0.23593 214 78 SH5236 5236 snR30 snR30 31 45 5252.745168 6158.777284 5705.761226 3.756313593 -0.185639 214 79 SH2232 2232 Phe1 tRNA-exon/intron 36 54 34.357644 200.206538 117.282091 2.0692317 -0.147642 214 80 SH1892 1892 Lys1 5' flank 140.228561 383.237841 261.733201 2.417858817 -0.24296 214 81 SH13256 13256 MT COX1 COX1-ai4 34.474365 195.482862 34.474365 162.008497 98.241431 1.99229468 0.215734 214 82 SH17901 17901 YLR061W_12_263195_263949_INTRON_13_401 intron 29.031681 174.538574 29.031681 146.506893 87.769287 1.94334257 -0.03715 214 83 SH739 739 Gln4 5' flank 31.017553 167.937279 99.477416 1.997724496 -0.018307 214 84 SH20343 20343 YER093C-A spliced 34.928819 190.783177 112.855998 2.052524646 -0.030976 214 85 SH21820 21820 copy of SH16000 37.040982 194.518331 115.7796565 2.063632257 -0.031664 214 86 SH20630 20630 YHR123W spliced 46.842758 219.536386 133.189572 2.124470223 -0.15451 214 87 SH8316 8316 snoRNA cluster4 intergenic 30.928136 191.01464 30.928136 161.086504 96.00732 1.982304347 0.018003 214 88 SH9579 9579 RUF3 RUF3 281 296 37.957209 187.7513 112.8542545 2.052517936 0.062738 214 89 SH11734 11734 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5556 5571 31330.54424 30014.95162 30672.74793 4.486752686 -0.391622 214 90 SH219 219 Arg3 5' flank 44.565916 224.347846 134.456881 2.128583033 -0.236411 214 91 SH10964 10964 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1706 1724 35.01946 157.91504 96.46725 1.984379898 0.271062 214 92 SH6225 6225 snR42 5' 31.311748 185.979256 108.645502 2.036011751 -0.113871 214 93 SH10897 10897 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1371 1386 33.552377 177.211826 105.3821015 2.022766855 0.050409 214 94 SH12895 12895 MT COX1 intronic 35.79453 237.601417 35.79453 202.806887 119.3007085 2.076643023 -0.146761 214 95 SH10810 10810 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 936 953 41.092835 194.175962 117.6343985 2.070534336 0.040069 214 96 SH16140 16140 YDR092W_4_629869_630598_INTRON_31_298 intron 36.154272 241.149433 36.154272 205.995161 121.0747165 2.083053461 -0.173658 214 97 SH14922 14922 MT tRNA Tyr 3' 34.230652 199.253687 34.230652 166.023035 100.1268435 2.000550525 0.177602 214 98 SH11619 11619 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4981 4994 16960.52548 16665.20392 16812.8647 4.225641718 -0.252371 214 99 SH19220 19220 YPL081W_16_404945_406039_INTRON_8_508 3' exon 30.268141 201.663523 30.268141 172.395382 101.3317615 2.005745592 -0.090647 214 100 SH20822 20822 YKR057W spliced 34.44007 193.899314 114.169692 2.057550829 -0.076231 214 101 SH5211 5211 snR30 5' 30.322686 161.243335 95.7830105 1.981288483 -0.023815 214 102 SH11947 11947 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6621 6636 684.029963 969.225552 826.6277575 2.917309984 0.090322 214 103 SH11963 11963 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6701 6714 47.070083 215.077068 131.0735755 2.117515147 -0.106077 214 104 SH9030 9030 snR17a / U3a U3a 436 453 40.789185 174.359014 107.5740995 2.031707719 0.274816