Column Row SH # numerical values ncRNA oligo covers start of coverage end of coverage Cy5 Cy3 avg log I Ratio 61 44 SH21430 21430 Tyr1_2 spliced 184.960247 125.881113 155.42068 2.191508805 1.619576 164 12 SH12474 12474 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 67047.80817 88642.61513 67047.80817 21595.80696 44321.80756 4.646617464 1.513654 41 100 SH12460 12460 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 63102.89413 83694.73552 63102.89413 20592.84139 41847.86776 4.621673335 1.50476 57 51 SH1164 1164 His1 tRNA 41 56 63837.48232 23544.31928 43690.9008 4.640390999 1.314795 154 15 SH12470 12470 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 39990.35267 56682.85927 39990.35267 16693.5066 28341.92964 4.452429416 1.21094 71 17 SH12462 12462 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 54129.70381 76639.4063 54129.70381 22510.70249 38320.20315 4.583427803 1.160939 45 63 SH3119 3119 Ser4 tRNA 1 13 56508.2473 24033.10693 40270.67711 4.604988932 1.118565 160 100 SH2011 2011 Lys3 tRNA 1 17 144.910502 143.310739 144.1106205 2.158695988 1.110542 128 37 SH2067 2067 Lys4 tRNA 1 17 154.039296 154.286461 154.1628785 2.187979811 1.056723 44 93 SH5651 5651 snR34 snR34 176 195 189.339545 186.300351 187.819948 2.273741716 0.985822 167 83 SH487 487 Asp2 5' flank - tRNA13 5' flank 13 159.556557 168.734726 164.1456415 2.215229356 0.946602 30 2 SH546 546 Cys1 tRNA 31 47 54.468638 93.101005 73.7848215 1.867967031 0.879212 99 102 SH1062 1062 Gly3 tRNA 46 58 79.768035 114.085487 96.926761 1.9864437 0.857317 11 84 SH12475 12475 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 31364.34175 48454.51724 31364.34175 17091.17548 24227.75862 4.384313238 0.846661 105 101 SH10989 10989 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1831 1847 47861.85877 24790.84051 36326.34964 4.560221759 0.84665 183 61 SH1387 1387 Leu1 tRNA 6 18 61453.64877 31351.91968 46402.78423 4.66654404 0.823783 29 21 SH12465 12465 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 38480.2355 59254.63737 38480.2355 20775.40187 29627.81868 4.471699678 0.823213 39 69 SH349 349 Arg5 3' flank 418.659279 392.734522 405.6969005 2.60820169 0.807379 122 24 SH1628 1628 Leu5 tRNA 6 18 60196.55323 31421.40747 45808.98035 4.660950625 0.792476 80 87 SH2236 2236 Phe1 tRNA-intron/exon 56 70 824.510894 718.892691 771.7017925 2.887449509 0.784565 121 47 SH1567 1567 Leu4 tRNA 6 18 59543.86101 31490.77107 45517.31604 4.658176646 0.77437 192 100 SH2458 2458 Phe5 tRNA 61 75 6833.23922 4730.9585 5782.09886 3.762085513 0.762706 2 96 SH239 239 Arg3 51-63 51 63 1437.111119 1196.840558 1316.975839 3.119577807 0.758775 91 86 SH12476 12476 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 5485.293899 9440.597318 5485.293899 3956.303419 4720.798659 3.674015478 0.741476 42 97 SH489 489 Asp2 tRNA 6 23 829.651747 756.95 793.3008735 2.899437932 0.71378 51 84 SH1401 1401 Leu1 tRNA 76 92 968.061464 867.445502 917.753483 2.962726041 0.713443 40 24 SH2347 2347 Phe3 tRNA 61 75 7863.26099 5529.186266 6696.223628 3.825829949 0.712342 198 98 SH3607 3607 Val1 tRNA 31 46 103.265508 144.586977 123.9262425 2.093163282 0.706487 141 104 SH2842 2842 Pro7 tRNA 16 32 193.158376 223.724086 208.441231 2.318983629 0.706346 54 71 SH10975 10975 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1761 1774 59600.19701 33267.4834 46433.8402 4.666834602 0.691392 140 7 SH2612 2612 Pro3 tRNA 11 28 64.879731 112.046348 88.4630395 1.946761857 0.685037 67 47 SH21722 21722 copy of SH11712 667.607356 637.62229 652.614823 2.814656934 0.684464 202 38 SH12472 12472 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 21797.46139 35603.39913 21797.46139 13806.93774 17802.19957 4.250473665 0.682781 9 10 SH20202 20202 YDR025W spliced 963.831968 884.956536 924.394252 2.965857236 0.676902 134 72 SH4913 4913 snR9 5' 67.297093 114.788061 91.042577 1.959244542 0.674643 44 103 SH9182 9182 snR7 U5 RNA U5 181 197 35.332223 85.441412 60.3868175 1.780942142 0.67216 162 12 SH12471 12471 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 1932.679014 3587.954969 1932.679014 1656.275955 1794.477485 3.253938014 0.66853 25 87 SH9857 9857 RUF5-1 RUF5-1 91 108 42.116318 92.744862 67.43059 1.82885696 0.661842 110 93 SH21923 21923 copy of SH20203 497.373112 502.940128 500.15662 2.699106021 0.65521 156 15 SH21392 21392 Pro2_7 spliced 214.803908 250.502713 232.6533105 2.366709237 0.653809 129 20 SH7592 7592 snR189 snR189 31 48 86.61528 133.841759 110.2285195 2.042293974 0.650734 63 78 SH1447 1447 Leu2 tRNA 6 18 47074.6716 27854.48917 37464.58039 4.573620873 0.645405 139 85 SH2670 2670 Pro4 tRNA 16 32 205.87037 243.830395 224.8503825 2.351893631 0.644415 3 82 SH2613 2613 Pro3 tRNA 16 32 213.157188 250.632474 231.894831 2.365291068 0.643297 50 47 SH1507 1507 Leu3 tRNA 6 18 58570.92067 33863.71382 46217.31724 4.664804733 0.6406 119 24 SH2900 2900 Pro8 tRNA 21 36 103.655783 150.995877 127.32583 2.104916516 0.63406 177 73 SH12294 12294 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.953091 131.000922 39.953091 92.047831 66.000461 1.819546969 0.633527 169 14 SH2402 2402 Phe4 tRNA 61 75 6224.787709 4742.713801 5483.750755 3.739077707 0.633174 171 70 SH8237 8237 snoRNA cluster 3; 3' 38.145082 127.566264 38.145082 90.421182 64.283132 1.808097028 0.632566 84 99 SH11130 11130 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2536 2553 746.815193 728.265691 737.540442 2.867785839 0.631125 107 61 SH11712 11712 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5446 5459 631.859412 630.525147 631.1922795 2.800161678 0.627624 12 55 SH2669 2669 Pro4 tRNA 11 28 69.257269 119.751205 94.504237 1.97545128 0.623719 159 60 SH11234 11234 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3056 3073 57222.46194 33653.64581 45438.05387 4.657419722 0.618702 67 76 SH85 85 Ala2 61-73 61 73 1176.616124 1099.295095 1137.95561 3.056125321 0.615995 173 80 SH291 291 Arg4 51-63 51 63 1577.499858 1430.339102 1503.91948 3.177224585 0.614856 65 95 SH12461 12461 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 25457.09441 42007.69201 25457.09441 16551.59761 21004.34601 4.322309164 0.61407 128 72 SH8667 8667 LSR1 / U2 RNA 5' 34.047188 86.412439 60.2298135 1.779811518 0.613768 72 63 SH1741 1741 Leu7 tRNA 1 13 48542.32726 29235.31979 38888.82352 4.589824805 0.612599 79 82 SH2784 2784 Pro6 tRNA 11 28 75.084538 125.920205 100.5023715 2.00217631 0.612063 31 92 SH6334 6334 snR43 5' 315.036259 350.028384 332.5323215 2.521833864 0.609936 148 69 SH8497 8497 snR19 / U1 RNA 5' 64.259625 115.973096 90.1163605 1.954803644 0.609911 92 60 SH2727 2727 Pro5 tRNA 16 32 200.764928 244.27876 222.521844 2.34737265 0.609871 57 80 SH4624 4624 snR3 snR3 36 52 276.871505 314.947852 295.9096785 2.47115917 0.608745 128 26 SH21391 21391 Phe1_5 spliced 249.69517 290.173408 269.934289 2.431258055 0.607166 129 79 SH2785 2785 Pro6 tRNA 16 32 200.98191 245.488919 223.2354145 2.348763093 0.603179 211 55 SH4914 4914 snR9 5' 56.922662 109.512773 83.2177175 1.9202158 0.602821 128 73 SH21409 21409 Ser3 spliced 77.712297 129.154834 103.4335655 2.014661496 0.600744 102 80 SH2556 2556 Pro2 tRNA 16 32 197.096725 242.297584 219.6971545 2.341824432 0.600308 40 53 SH2555 2555 Pro2 tRNA 11 28 72.390106 124.21402 98.302063 1.992562632 0.599474 31 76 SH397 397 Asn1 66-74 + 3' flank 66 3' flank 34.228579 87.57006 60.8993195 1.78461244 0.594019 54 86 SH11141 11141 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2591 2607 15075.87559 10580.88525 12828.38042 4.10817183 0.593537 106 26 SH12345 12345 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 73.642993 198.502467 73.642993 125.859474 99.7512335 1.998918275 0.592889 68 102 SH2291 2291 Phe2 tRNA-intron/exon 51 67 793.503514 787.499952 790.501733 2.897902826 0.592887 60 82 SH2786 2786 Pro6 tRNA 21 36 98.734844 150.035503 124.3851735 2.094768616 0.590949 12 40 SH5758 5758 snR35 5' 58.394568 111.579339 84.9869535 1.929352262 0.590869 98 38 SH5544 5544 snR33 snR33 6 22 33.786978 87.13419 60.460584 1.781472338 0.590415 107 16 SH12468 12468 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 46450.82292 74987.77322 46450.82292 28537.9503 37494.38661 4.573966253 0.590181 196 3 SH2788 2788 Pro6 tRNA-exon/intron 31 45 35.423992 89.366883 62.3954375 1.795152834 0.590134 66 96 SH1877 1877 Leu9 3' flank 32.551309 84.703543 58.627426 1.768100827 0.588942 124 100 SH16623 16623 YFL039C_6_54695_53260_INTRON_11_318 intron 783.661428 1564.199987 783.661428 781.538559 782.5999935 2.89353984 0.587691 83 104 SH3437 3437 Trp1 tRNA 16 31 91.535464 143.438911 117.4871875 2.069990507 0.586648 33 31 SH2293 2293 Phe2 tRNA 61 73 260.945516 304.669116 282.807316 2.45149064 0.585501 155 70 SH8157 8157 snoRNA cluster 3; intergenic/snR70 39.197232 131.835531 39.197232 93.638299 66.4177655 1.82228426 0.582488 19 7 SH10881 10881 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1291 1306 4605.675922 3770.279068 4187.977495 3.622004339 0.579991 62 88 SH16603 16603 YFL034C-B_6_63992_63015_INTRON_21_134 5' exon 204.254652 455.708177 204.254652 252.453525 228.3540885 2.358608792 0.577902 208 54 SH4915 4915 snR9 5' 32.803867 86.337612 59.5707395 1.775032991 0.577039 145 30 SH3713 3713 Val3 tRNA 46 58 151.26461 202.236676 176.750643 2.247361002 0.576913 87 26 SH2510 2510 Pro1 tRNA 41 53 255.261626 301.177025 278.2193255 2.444387293 0.575647 116 84 SH1742 1742 Leu7 tRNA 6 18 44813.46595 27925.83748 36369.65172 4.560739142 0.575001 194 96 SH2726 2726 Pro5 tRNA 11 28 59.872616 113.926442 86.899529 1.939017423 0.574831 64 78 SH11248 11248 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3126 3143 39893.95906 25241.36156 32567.66031 4.51278656 0.573088 79 20 SH11715 11715 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5461 5476 579.063317 605.794737 592.429027 2.772636329 0.571954 58 77 SH11075 11075 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2261 2278 381.124254 421.792166 401.45821 2.603640344 0.571329 30 16 SH9441 9441 RUF2 RUF2 46 63 424.45307 463.254848 443.853959 2.647240098 0.569955 122 63 SH2457 2457 Phe5 tRNA 56 70 1009.034501 988.449657 998.742079 2.999453348 0.569697 55 20 SH2680 2680 Pro4 tRNA-intron/exon 66 78 194.018983 244.013994 219.0164885 2.340476812 0.569164 179 90 SH2512 2512 Pro1 tRNA 51 63 1551.743829 1452.414109 1502.078969 3.176692765 0.5691 108 78 SH2728 2728 Pro5 tRNA 21 36 95.432559 148.727735 122.080147 2.086645044 0.56838 89 100 SH3120 3120 Ser4 tRNA 6 18 9004.651654 6840.899753 7922.775704 3.898877361 0.567995 154 2 SH3658 3658 Val2 tRNA 31 46 112.180363 165.215259 138.697811 2.142069607 0.567667 93 12 SH1461 1461 Leu2 tRNA 76 92 2038.113314 1855.24286 1946.678087 3.28929414 0.567632 104 98 SH15938 15938 YDL115C_4_255042_253994_INTRON_1_88 intron 154.239162 359.538251 154.239162 206.299089 180.2691255 2.255921352 0.566712 206 10 SH11707 11707 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5421 5434 331.238887 375.455722 353.3473045 2.548201783 0.566085 92 90 SH2961 2961 Ser1 tRNA 36 53 41.18747 96.339135 68.7633025 1.837356726 0.565371 55 76 SH8778 8778 LSR1 / U2 RNA U2 531 546 33.50808 87.9157 60.71189 1.783273753 0.565292 103 40 SH9856 9856 RUF5-1 RUF5-1 86 103 55.027114 109.962896 82.495005 1.916427653 0.562724 7 12 SH6078 6078 snR37 snR37 306 322 33.335882 87.911475 60.6236785 1.782642285 0.560223 192 96 SH8739 8739 LSR1 / U2 RNA U2 336 352 33.528432 88.229945 60.8791885 1.784468855 0.559178 150 48 SH2843 2843 Pro7 tRNA 21 36 106.910025 161.041588 133.9758065 2.12702638 0.556867 211 86 SH20203 20203 YDR025W spliced 472.56017 512.879104 492.719637 2.692599871 0.556396 214 18 SH4909 4909 snR9 5' 82.528963 137.145579 109.837271 2.040749734 0.554864 184 74 SH8391 8391 snoRNA cluster 5 snR190 71.635054 197.200027 71.635054 126.564973 99.1000135 1.996073714 0.553929 58 61 SH2994 2994 Ser2 5' flank 88.840053 143.44862 116.1443365 2.064998037 0.553785 133 102 SH6110 6110 snR37 3' 40.613833 96.422897 68.518365 1.835806991 0.551785 86 85 SH16014 16014 YDL137W_4_216158_217074_INTRON_1_332 intron 324.994211 697.236856 324.994211 373.242645 349.118428 2.542972773 0.550196 190 69 SH21446 21446 copy of SH84 86.985631 141.90493 114.4452805 2.058597888 0.550044 60 58 SH19348 19348 YPL249C-A_16_76239_75699_INTRON_17_254 intron 775.01373 1567.460377 775.01373 793.446647 784.2301885 2.894443556 0.549496 60 94 SH7449 7449 snR69 3' 96.503675 151.487414 123.9955445 2.09340608 0.548371 59 66 SH4941 4941 snR9 snR9 111 129 60.73904 116.377913 88.5584765 1.947230137 0.548228 206 99 SH348 348 Arg5 3' flank 76.39594 131.620537 104.0082385 2.017067741 0.54807 138 3 SH9422 9422 RUF2 5' 42.702125 98.620958 70.6615415 1.849183107 0.547952 173 22 SH21245 21245 YPL031C spliced 96.123202 151.398413 123.7608075 2.092583134 0.544992 59 24 SH21838 21838 copy of SH16603 183.702819 237.649134 210.6759765 2.323615016 0.544774 19 12 SH1165 1165 His1 tRNA 46 60 2056.508759 1898.443223 1977.475991 3.296111219 0.544676 86 86 SH2841 2841 Pro7 tRNA 11 28 62.941464 118.769022 90.855243 1.958349994 0.544198 64 29 SH10986 10986 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1816 1833 53757.04088 33451.04754 43604.04421 4.639526771 0.543614 25 46 SH11455 11455 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4161 4174 318.298013 368.31293 343.3054715 2.535680725 0.543499 50 34 SH12459 12459 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 3140.326897 5904.644242 3140.326897 2765.317345 2952.822121 3.470237286 0.540371 10 21 SH5006 5006 snR10 snR10 61 73 276.879898 328.906489 302.8931935 2.481289514 0.539922 179 20 SH15637 15637 YBR186W_2_600511_602318_INTRON_1552_1664 intron 37.446726 130.346545 37.446726 93.899819 65.6732725 1.817388658 0.53939 108 98 SH20554 20554 YHL001W spliced 464.43555 511.07764 487.756595 2.68820315 0.538596 186 89 SH2245 2245 Phe1 3' flank 604.55813 643.063358 623.810744 2.79505285 0.537894 9 86 SH11323 11323 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3501 3518 55865.55265 34738.14684 45301.84975 4.656115935 0.537608 53 29 SH3659 3659 Val2 tRNA 36 50 77.705784 133.782953 105.7443685 2.024257248 0.535879 169 96 SH4890 4890 snR8 3' 46.77943 103.363316 75.071373 1.875474359 0.534563 33 13 SH21399 21399 Pro8 spliced 116.215763 172.580285 144.398024 2.15956125 0.533756 154 100 SH1965 1965 Lys2 tRNA 26 45 90.904135 147.147237 119.025686 2.075640693 0.533379 168 6 SH21390 21390 Phe1_5 spliced 1073.55428 1070.789131 1072.171706 3.030264342 0.531516 67 89 SH13532 13532 MT COX1 intronic 33.621293 122.291263 33.621293 89.66997 61.6456315 1.789902306 0.531449 47 67 SH2505 2505 Pro1 tRNA 16 32 147.727803 204.498317 176.11306 2.245791563 0.529795 155 80 SH21133 21133 YNL147W spliced 320.551813 374.030624 347.2912185 2.540693802 0.528717 37 94 SH5224 5224 snR30 5' 34.134802 90.526833 62.3308175 1.794702823 0.528712 82 82 SH3436 3436 Trp1 tRNA 11 27 44.559824 101.500667 73.0302455 1.863502761 0.527057 2 49 SH21355 21355 YPR187W spliced 1196.572556 1183.070363 1189.82146 3.075481798 0.526887 153 16 SH10848 10848 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1126 1146 75.733519 132.590069 104.161794 2.017708451 0.525476 188 55 SH17859 17859 YKR095W-A_11_625432_625839_INTRON_39_113 3' exon 439.301228 929.588341 439.301228 491.287113 465.2941705 2.667727611 0.525129 21 57 SH11379 11379 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3781 3798 43913.63182 28338.91282 36126.27232 4.557823151 0.52507 30 7 SH10885 10885 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1311 1324 38909.9579 25488.19576 32199.07683 4.50784342 0.524422 37 26 SH9318 9318 RUF1 RUF1 166 183 38.111843 95.24781 66.6798265 1.823994461 0.524295 20 27 SH2671 2671 Pro4 tRNA 21 36 103.840232 161.030459 132.4353455 2.122003909 0.523728 188 61 SH21867 21867 copy of SH19502 34.965799 91.937202 63.4515005 1.802441897 0.523676 113 34 SH18832 18832 YNL302C_14_62942_61957_INTRON_21_571 intron 183.279627 422.668917 183.279627 240.38929 211.8344585 2.325996607 0.523065 86 25 SH20287 20287 YDR471W spliced 56.556638 113.879904 85.218271 1.930532719 0.520995 165 54 SH16134 16134 YDR064W_4_579453_580447_INTRON_22_560 3' exon 94.440078 245.285983 94.440078 151.845905 123.1429915 2.0904097 0.520023 113 9 SH21521 21521 copy of SH3382 40.261539 97.646019 68.953779 1.838558073 0.518692 61 22 SH21173 21173 YNL312W spliced 300.780438 356.94093 328.860684 2.517011956 0.518471 12 12 SH20843 20843 YLL050C spliced 48.90552 106.383266 77.644393 1.890110099 0.517994 176 72 SH16834 16834 YGL178W_7_167356_170575_INTRON_4_643 intron 31.973236 118.538899 31.973236 87.565663 59.7694495 1.776479256 0.517724 136 64 SH3382 3382 Thr4 5' flank - tRNA12 12 37.605782 95.115945 66.3608635 1.821912029 0.516238 120 73 SH645 645 Gln2 tRNA 11 28 32.534724 88.871515 60.7031195 1.78321101 0.515399 30 24 SH17150 17150 YHR012W_8_129473_130440_INTRON_49_167 intron 64.27338 185.181957 64.27338 121.908577 93.0909785 1.968907595 0.515236 101 89 SH21720 21720 copy of SH11710 12723.6069 9592.422181 11158.01454 4.047586923 0.515169 60 99 SH1966 1966 Lys2 tRNA 31 50 337.341095 394.344468 365.8427815 2.56329449 0.513533 176 70 SH21393 21393 Pro2_7 spliced 96.931569 154.939091 125.93533 2.100147585 0.513504 124 6 SH9656 9656 RUF4 RUF4 56 68 248.064387 306.024382 277.0443845 2.442549352 0.513341 61 52 SH2852 2852 Pro7 tRNA-intron/exon 66 78 203.103878 262.174843 232.6393605 2.366683195 0.509253 34 44 SH5934 5934 snR36 snR36 126 140 44.67258 102.5769 73.62474 1.867023774 0.508364 212 54 SH2084 2084 Lys4 86-96 + 3' flank 86 102 39.230237 97.116399 68.173318 1.833614432 0.507953 93 26 SH2899 2899 Pro8 tRNA 16 32 121.521181 180.663261 151.092221 2.179242105 0.507736 85 89 SH11477 11477 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4271 4284 9110.356988 7191.092722 8150.724855 3.911196233 0.507028 58 5 SH5757 5757 snR35 5' 58.116548 116.273175 87.1948615 1.940490892 0.506839 105 21 SH9830 9830 RUF5-1 5' 40.582065 98.558877 69.570471 1.842424944 0.506356 191 50 SH11708 11708 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5426 5441 518.694664 574.371008 546.532836 2.73761626 0.506336 212 64 SH7634 7634 snR189 3' 39.489347 97.471764 68.4805555 1.835567275 0.506034 145 28 SH4912 4912 snR9 5' 204.467411 264.115918 234.2916645 2.369756838 0.505644 142 99 SH10949 10949 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1631 1653 125.186331 184.670967 154.928649 2.190131734 0.505404 174 66 SH4243 4243 telomerase RNA telomerase 251 267 32.13048 88.764855 60.4476675 1.781379547 0.50514 58 97 SH10803 10803 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 901 916 3041.791795 2752.387471 2897.089633 3.461961932 0.504569 186 90 SH2346 2346 Phe3 tRNA 56 70 1088.480502 1103.327586 1095.904044 3.03977253 0.504561 96 94 SH11316 11316 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3466 3483 14008.07381 10523.79758 12265.93569 4.088700683 0.502679 184 9 SH11241 11241 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3091 3108 45568.93741 29706.96262 37637.95001 4.575625961 0.502673 53 12 SH17866 17866 YLL050C_12_40413_39803_INTRON_15_193 intron 39.718194 136.630815 39.718194 97.912621 68.8154075 1.837685686 0.501679 33 24 SH12328 12328 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.656725 126.29681 34.656725 92.640085 63.648405 1.803787525 0.500436 28 15 SH11073 11073 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2251 2268 34.057183 91.794133 62.925658 1.798827766 0.500242 113 72 SH21236 21236 YOR293W spliced 46.481856 104.869526 75.675691 1.878956395 0.500081 10 52 SH2737 2737 Pro5 tRNA-intron/exon 66 78 211.238482 271.824785 241.5316335 2.382974019 0.499941 210 82 SH9440 9440 RUF2 RUF2 41 57 220.578119 281.268081 250.9231 2.399540644 0.499508 31 80 SH7348 7348 snR68 5' 30.120754 82.406374 56.263564 1.750227239 0.498976 73 26 SH20795 20795 YKL156W spliced 30.999912 85.488498 58.244205 1.765252722 0.498522 173 89 SH10824 10824 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1006 1027 32.004847 88.917999 60.461423 1.781478364 0.497969 166 26 SH16898 16898 YGL226C-A_7_73156_72747_INTRON_22_170 intron 59.434183 176.619416 59.434183 118.185233 88.809708 1.948460442 0.497604 113 6 SH3474 3474 Tyr1 5' flank 31.564734 87.553246 59.55899 1.774947324 0.497191 73 55 SH2292 2292 Phe2 tRNA-intron/exon 56 70 846.137772 887.199163 866.6684675 2.937852996 0.496811 97 54 SH7176 7176 snR64 5' 31.855234 88.673152 60.264193 1.780059345 0.495749 12 97 SH11713 11713 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5451 5466 92.364583 151.846099 122.105341 2.086734661 0.495172 153 3 SH6278 6278 snR42 snR42 171 188 81.720927 140.967915 111.344421 2.046668461 0.494353 206 68 SH11402 11402 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3896 3911 33.751196 91.751597 62.7513965 1.797623395 0.492077 38 104 SH8740 8740 LSR1 / U2 RNA U2 341 357 33.840955 91.88613 62.8635425 1.798398851 0.491976 3 67 SH21429 21429 Tyr1_2 spliced 58.372821 117.459586 87.9162035 1.944068926 0.49176 184 17 SH5623 5623 snR34 snR34 36 53 31.927108 89.098165 60.5126365 1.781846075 0.49172 76 26 SH2390 2390 Phe4 tRNA 1 15 443.58832 506.35154 474.96993 2.676666116 0.491436 75 80 SH1642 1642 Leu5 tRNA 76 92 948.559702 985.211317 966.8855095 2.985375052 0.490948 85 32 SH14690 14690 MT 21S rRNA 3' 143.667861 347.87928 143.667861 205.211419 174.43964 2.241645182 0.490518 41 57 SH5495 5495 snR32 snR32 136 153 31.550513 87.971807 59.76116 1.776419019 0.490387 106 101 SH1689 1689 Leu6 tRNA 11 25 11838.13878 9150.984313 10494.56154 4.020964299 0.490175 67 75 SH10567 10567 RUF8 RUF8 761 777 149.459211 211.324789 180.392 2.256217274 0.488378 128 52 SH4721 4721 snR4 snR4 141 157 32.136828 89.57068 60.853754 1.784287375 0.488312 52 4 SH5830 5830 snR35 snR35 336 353 82.215249 142.056396 112.1358225 2.049744373 0.48678 100 73 SH9350 9350 RUF1 RUF1 326 344 38.537272 97.421854 67.979563 1.832378368 0.486686 53 35 SH5179 5179 snR13 snR13 51 67 30.204742 83.575164 56.889953 1.755035575 0.485512 25 83 SH16092 16092 YDR025W_4_491510_492319_INTRON_46_384 intron/exon 359.956684 783.560728 359.956684 424.604044 392.280364 2.59359657 0.484775 192 9 SH11312 11312 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3446 3463 54223.60842 35028.75769 44626.18306 4.649589743 0.484538 155 91 SH3182 3182 Ser5 tRNA 31 47 70.903796 130.686548 100.795172 2.00343973 0.484016 50 56 SH10883 10883 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1301 1316 39471.28354 26503.03733 32987.16044 4.518344933 0.483839 5 32 SH11240 11240 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3086 3101 39133.9456 26313.17877 32723.56218 4.514860574 0.483282 126 7 SH6004 6004 snR37 5' 52.125671 111.577457 81.851564 1.913026982 0.483075 127 9 SH750 750 Gln4 tRNA 21 38 32.88214 90.936528 61.909334 1.791756132 0.482762 200 59 SH21723 21723 copy of SH11713 91.327781 151.843176 121.5854785 2.084881708 0.482583 58 58 SH5875 5875 snR35 3' 240.805925 304.743276 272.7746005 2.435803928 0.482066 138 84 SH9625 9625 RUF4 5' 38.002293 97.102507 67.5524 1.829640783 0.482055 202 96 SH4472 4472 U3b (snR17b) 5' 129.06996 191.318714 160.194337 2.204647159 0.48138 82 96 SH2302 2302 Phe2 3' flank 92.042628 152.723586 122.383107 2.087721475 0.481085 70 20 SH548 548 Cys1 tRNA 41 56 61.001375 120.900356 90.9508655 1.958806836 0.479671 147 58 SH17195 17195 YHR021C_8_148660_147862_INTRON_4_553 intron 60.727111 180.357416 60.727111 120.630305 90.678708 1.957505324 0.479538 157 41 SH6005 6005 snR37 5' 45.655747 105.13409 75.3949185 1.877342076 0.478971 163 37 SH11030 11030 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2036 2049 48018.49304 31601.11795 39809.8055 4.599990056 0.478503 48 28 SH20722 20722 YJL136C spliced 31.420821 88.343017 59.881919 1.777295709 0.478385 19 66 SH21132 21132 YNL147W spliced 429.913929 497.038563 463.476246 2.666027481 0.478206 74 87 SH1543 1543 Leu3 3' flank 30.327907 84.493983 57.410945 1.758994696 0.478131 208 47 SH15821 15821 YDL064W_4_337486_338069_INTRON_39_148 intron 28.810026 105.213846 28.810026 77.40382 53.106923 1.725151139 0.477865 149 77 SH8548 8548 snR19 / U1 RNA U1 236 250 1184.738344 1211.976225 1198.357285 3.07858632 0.476566 9 97 SH10872 10872 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1246 1262 50518.23079 33092.55992 41805.39535 4.621232335 0.476244 159 81 SH3237 3237 Thr1 tRNA 41 56 198.152367 262.746616 230.4494915 2.362575754 0.474695 119 20 SH2511 2511 Pro1 tRNA 46 58 450.221425 518.595497 484.408461 2.68521172 0.474379 194 5 SH1749 1749 Leu7 tRNA 41 55 236.966078 302.451643 269.7088605 2.430895214 0.473703 166 52 SH525 525 Cys1 5' flank 250.070766 315.749315 282.9100405 2.451648361 0.473631 140 86 SH8774 8774 LSR1 / U2 RNA U2 511 527 39.757471 99.321867 69.539669 1.842232619 0.473312 156 67 SH9207 9207 snR6 / U6 RNA 5' 439.321728 508.14898 473.735354 2.675535797 0.473014 159 37 SH17893 17893 YLR048W_12_242233_243350_INTRON_91_449 intron 30.51572 115.021447 30.51572 85.505727 58.0107235 1.763508282 0.472906 83 90 SH3449 3449 Trp1 tRNA 76 90 295.565973 362.135487 328.85073 2.51699881 0.4728 128 89 SH1059 1059 Gly3 tRNA 31 45 289.133868 355.597114 322.365491 2.508348545 0.472688 126 51 SH21922 21922 copy of SH20202 837.474676 893.13662 865.305648 2.937169538 0.47267 14 51 SH3500 3500 Tyr1 tRNA-intron/exon 41 58 39.859365 99.549797 69.704581 1.843261321 0.470784 128 64 SH1640 1640 Leu5 tRNA-intron/exon 66 82 430.212318 499.993238 465.102778 2.667548934 0.469971 81 102 SH6631 6631 snR48 5' 52.263501 112.524166 82.3938335 1.91589471 0.469225 17 83 SH2614 2614 Pro3 tRNA 21 36 101.62193 163.827593 132.7247615 2.122951954 0.469046 166 92 SH20589 20589 YHR021C spliced 31.727871 89.904532 60.8162015 1.784019291 0.468478 148 93 SH10576 10576 RUF8 RUF8 806 822 40.38849 100.255326 70.321908 1.847090646 0.467459 58 72 SH497 497 Asp2 tRNA 46 61 123.692233 187.468406 155.5803195 2.191954659 0.465598 142 36 SH9072 9072 snR14 / U4 RNA 5' 102.868193 165.531448 134.1998205 2.127751935 0.464919 138 32 SH5165 5165 snR13 5' 41.236663 101.279146 71.2579045 1.852833047 0.4642 128 11 SH11102 11102 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2396 2413 70.643992 131.853304 101.248648 2.005389233 0.463771 212 51 SH17095 17095 YHL001W_8_104270_105084_INTRON_130_527 intron 40.542009 140.153104 40.542009 100.611095 70.576552 1.848660437 0.463416 45 93 SH6494 6494 snR46 5' 30.267375 85.273293 57.770334 1.761704878 0.463212 116 88 SH21195 21195 YOL121C spliced 32.832675 91.820043 62.326359 1.794671757 0.46304 100 102 SH9832 9832 RUF5-1 5' 250.682186 318.500173 284.5911795 2.454221436 0.462888 117 73 SH15942 15942 YDL125C_4_239605_239018_INTRON_98_208 5' exon 34.522692 127.846527 34.522692 94.323835 64.4232635 1.809042721 0.462623 202 68 SH9000 9000 snR17a / U3a U3a 286 303 35.868871 95.832943 65.850907 1.818561761 0.462067 170 61 SH11040 11040 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2086 2101 49961.63911 33075.71778 41518.67845 4.618243521 0.462065 108 44 SH3519 3519 Tyr1 3' flank 249.364932 317.503924 283.434428 2.452452602 0.461131 209 17 SH10703 10703 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 401 419 39.961147 100.174754 70.0679505 1.845519414 0.460144 45 45 SH2795 2795 Pro6 tRNA-intron/exon 66 78 179.604788 246.016042 212.810415 2.327992879 0.459885 53 42 SH9177 9177 snR7 U5 RNA U5 156 172 34.30384 94.151843 64.2278415 1.807723327 0.459692 182 70 SH8556 8556 snR19 / U1 RNA U1 276 292 29.887944 84.160634 57.024289 1.756059879 0.45963 90 86 SH8874 8874 LSR1 / U2 RNA U2 1011 1028 49.561994 110.300961 79.9314775 1.902717841 0.459203 213 39 SH5419 5419 snR31 snR31 161 177 35.200802 95.260444 65.230623 1.814451526 0.459098 90 62 SH15304 15304 YAL001C_1_151163_147591_INTRON_71_160 intron 32.02711 121.859014 32.02711 90.831904 61.429507 1.78837703 0.458545 29 24 SH9034 9034 snR17a / U3a U3a 456 468 930.784724 989.768832 960.276778 2.982396427 0.458248 191 36 SH11400 11400 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3886 3901 30.897571 87.907052 59.4023115 1.773803345 0.457638 60 72 SH1157 1157 His1 tRNA 6 23 35.307666 95.461109 65.3843875 1.81547406 0.457222 77 66 SH2244 2244 Phe1 3' flank 56.79846 118.005711 87.4020855 1.941521795 0.456202 158 71 SH2237 2237 Phe1 tRNA 61 73 251.90083 321.143635 286.5222325 2.457158326 0.455894 152 50 SH6731 6731 snR49 3' 30.91727 88.170818 59.544044 1.774838327 0.454846 47 57 SH13070 13070 MT COX1 Exon3 31.215067 119.480168 31.215067 89.265101 60.240084 1.779885569 0.454567 180 87 SH21604 21604 copy of SH6880 34.322503 94.43819 64.3803465 1.80875331 0.454516 137 61 SH8745 8745 LSR1 / U2 RNA U2 366 382 40.462683 100.969157 70.71592 1.849517196 0.454508 186 21 SH12376 12376 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.38939 132.187207 36.38939 96.797817 66.5936035 1.823432516 0.453119 34 69 SH4700 4700 snR4 snR4 36 53 32.008893 91.069611 61.539252 1.789152213 0.453052 146 58 SH21247 21247 YPL031C spliced 29.141509 81.22367 55.1825895 1.741802076 0.452769 165 12 SH1521 1521 Leu3 tRNA 76 92 2020.143699 1984.60341 2002.373555 3.301545101 0.452655 50 68 SH7135 7135 snR63 snR63 181 198 32.721615 92.168548 62.4450815 1.795498237 0.452509 143 91 SH4172 4172 SRP RNA 3' 29.527842 83.35511 56.441476 1.751598362 0.452361 165 59 SH11188 11188 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2826 2844 32.706607 92.163678 62.4351425 1.795429107 0.452149 61 92 SH2557 2557 Pro2 tRNA-exon/intron 21 36 92.132331 155.345356 123.7388435 2.092506053 0.452095 116 46 SH6707 6707 snR49 snR49 61 78 29.437065 82.939141 56.188103 1.74964437 0.451677 214 75 SH11709 11709 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5431 5446 92.731633 156.043137 124.387385 2.094776338 0.451425 212 35 SH5756 5756 snR35 5' 87.311925 150.325622 118.8187735 2.074885065 0.450961 28 18 SH5516 5516 snR32 3' 33.491967 93.407419 63.449693 1.802429525 0.45066 193 101 SH8113 8113 snoRNA cluster 3; 5' 28.99013 108.599759 28.99013 80.609629 54.7998795 1.738779604 0.450215 113 89 SH14840 14840 MT tRNA Asp tRNA Asp 38.614819 136.893958 38.614819 99.279139 68.946979 1.838515242 0.449635 212 82 SH3330 3330 Thr3 5' flank - tRNA12 12 30.256421 86.202953 58.229687 1.765144456 0.448809 196 99 SH2365 2365 Phe3 3' flank 123.257779 188.871685 156.064732 2.193304771 0.44873 143 6 SH8521 8521 snR19 / U1 RNA U1 101 120 36.064569 96.694665 66.379617 1.822034742 0.447998 101 15 SH5683 5683 snR34 snR34 336 352 34.182243 94.585056 64.3836495 1.80877559 0.447487 196 100 SH10222 10222 RUF6 RUF6 956 970 542.907843 621.021521 581.964682 2.764896629 0.447089 167 32 SH11921 11921 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6491 6507 31.064164 89.258116 60.16114 1.779316057 0.446861 51 27 SH84 84 Ala2 56-68 56 68 94.677036 158.557657 126.6173465 2.102493208 0.446391 214 91 SH10964 10964 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1706 1724 28.726798 79.517097 54.1219475 1.733373416 0.446082 152 14 SH19996 19996 YBR048W spliced 250.851064 322.318944 286.585004 2.457253462 0.444681 77 80 SH8738 8738 LSR1 / U2 RNA U2 331 347 29.879706 85.202647 57.5411765 1.759978737 0.443503 73 82 SH20321 20321 YER056C-A spliced 228.440859 299.373004 263.9069315 2.421450797 0.443416 131 17 SH9071 9071 snR14 / U4 RNA 5' 37.84112 98.774827 68.3079735 1.834471401 0.443265 184 102 SH19086 19086 YOR293W_15_867094_867848_INTRON_53_489 intron/exon 34.752575 129.268333 34.752575 95.515758 65.1341665 1.81380886 0.443091 42 42 SH1581 1581 Leu4 tRNA 76 92 1818.869688 1819.249446 1819.059567 3.259846921 0.442843 193 63 SH5274 5274 snR30 snR30 221 237 90.798165 154.756035 122.7771 2.089117371 0.4425 140 91 SH13427 13427 MT COX1 intronic 28.775414 107.850306 28.775414 80.074892 54.425153 1.735799659 0.442499 211 22 SH16042 16042 YDL191W_4_117665_118518_INTRON_4_494 intron 35.055956 129.9342 35.055956 95.878244 65.4671 1.816023103 0.442358 18 22 SH15130 15130 MT tRNA Phe tRNA 30.8286 118.578841 30.8286 88.750241 59.7894205 1.776624344 0.441872 118 70 SH7948 7948 snoRNA cluster1 3' 429.190932 936.811072 429.190932 508.62014 468.905536 2.67108536 0.440338 202 33 SH2845 2845 Pro7 tRNA-exon/intron 31 45 35.552191 96.512026 66.0321085 1.819755165 0.440216 91 77 SH15515 15515 YBR048W_2_332790_333771_INTRON_46_556 intron 437.441271 953.594708 437.441271 517.153437 477.297354 2.678789027 0.440111 141 91 SH8458 8458 snoRNA cluster 5 snR128 30.930742 119.18242 30.930742 89.251678 60.09121 1.778810949 0.440019 9 2 SH20337 20337 YER074W-A spliced 76.896619 140.186856 108.5417375 2.035596769 0.439632 134 91 SH12347 12347 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 46.305008 153.247827 46.305008 107.942819 77.1239135 1.887189059 0.43925 26 82 SH10837 10837 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1071 1087 151.889898 220.184769 186.0373335 2.269600106 0.439085 29 34 SH9345 9345 RUF1 RUF1 301 317 37.678113 98.822983 68.250548 1.834106143 0.438729 33 6 SH3472 3472 Tyr1 5' flank 37.91197 99.081686 68.496828 1.83567046 0.438378 205 103 SH2730 2730 Pro5 tRNA-exon/intron 31 45 42.038185 103.430587 72.734386 1.861739777 0.43746 41 50 SH3608 3608 Val1 tRNA 36 50 77.938552 141.544514 109.741533 2.040371023 0.436432 38 88 SH1914 1914 Lys1 tRNA 26 45 82.197111 146.058745 114.127928 2.057391933 0.436374 16 100 SH6592 6592 snR47 snR47 66 85 558.719213 641.27336 599.9962865 2.778148562 0.436162 24 31 SH7779 7779 snoRNA cluster1 intergenic 39.331407 139.034183 39.331407 100.702776 70.0170915 1.845204066 0.436026 30 22 SH6833 6833 snR52 snR52 71 87 55.518157 117.941485 86.729821 1.93816845 0.435557 25 5 SH21648 21648 copy of SH8563 33.892692 94.813535 64.3531135 1.808569564 0.434423 41 17 SH3020 3020 Ser2 tRNA 61 73 75.659558 139.272199 107.4658785 2.031270593 0.434265 194 47 SH8893 8893 LSR1 / U2 RNA U2 1106 1122 30.794741 89.158452 59.9765965 1.777981817 0.434253 197 69 SH11049 11049 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2131 2148 51.803199 114.083329 82.943264 1.918781122 0.434186 142 56 SH2401 2401 Phe4 tRNA 56 70 1082.617827 1150.018661 1116.318244 3.047788022 0.433973 9 89 SH11714 11714 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5456 5469 224.120223 296.618076 260.3691495 2.415589524 0.433929 34 66 SH11646 11646 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5116 5134 41.545194 103.11097 72.328082 1.859306949 0.43385 127 67 SH3044 3044 Ser3 5' flank 32.484573 92.762232 62.6234025 1.79673666 0.433132 114 8 SH10947 10947 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1621 1638 383.421712 463.713407 423.5675595 2.626922691 0.432451 184 37 SH2673 2673 Pro4 tRNA-exon/intron 31 45 35.046073 96.331857 65.688965 1.817492419 0.432366 175 78 SH11360 11360 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3686 3704 35.902707 97.255863 66.579285 1.823339127 0.432353 197 51 SH11722 11722 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5496 5513 30.827378 89.414769 60.1210735 1.779026727 0.4323 72 104 SH8840 8840 LSR1 / U2 RNA U2 841 856 3326.680199 3120.989045 3223.834622 3.508372755 0.43215 21 66 SH20288 20288 YDR471W spliced 34.74823 96.026167 65.3871985 1.815492731 0.431966 198 44 SH4910 4910 snR9 5' 98.462724 163.995387 131.2290555 2.118030003 0.431209 212 75 SH1526 1526 Leu3 101-114 + 3' flank 101 29.981241 86.404527 58.192884 1.764869881 0.431114 125 27 SH16142 16142 YDR092W_4_629869_630598_INTRON_31_298 intron 38.179795 136.910916 38.179795 99.731121 68.955458 1.838568647 0.430813 19 91 SH19765 19765 Negative Control 86.592412 151.274637 118.9335245 2.075304289 0.430632 60 4 SH2290 2290 Phe2 tRNA-intron/exon 46 62 40.498753 102.215045 71.356899 1.853435968 0.430199 46 33 SH350 350 Arg5 3' flank 1316.017384 1372.641226 1344.329305 3.128505666 0.43017 125 21 SH20205 20205 YDR059C spliced 125.457857 193.318789 159.388323 2.202456501 0.429985 59 37 SH16620 16620 YFL039C_6_54695_53260_INTRON_11_318 intron 38.630813 137.906567 38.630813 100.275754 69.4532835 1.841692782 0.429574 177 83 SH12296 12296 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.876254 136.367501 37.876254 99.491247 68.6837505 1.836854002 0.429076 171 63 SH9155 9155 snR7 U5 RNA U5 46 62 30.195601 87.363178 58.7793895 1.769225071 0.428528 48 31 SH11905 11905 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6411 6428 48.077061 110.454459 79.26576 1.899085628 0.428473 61 99 SH16730 16730 YGL076C_7_365994_364333_INTRON_565_1032 5' exon 265.293375 605.009522 265.293375 340.716147 303.004761 2.481449452 0.428443 83 12 SH8442 8442 snoRNA cluster 5 snR128 31.90905 123.036166 31.90905 92.127116 62.018083 1.792518338 0.428173 68 47 SH721 721 Gln3 3' flank 52.932889 115.674612 84.3037505 1.925846896 0.427852 58 6 SH7464 7464 snR71 5' 31.01887 90.472353 60.7456115 1.783514908 0.427289 46 92 SH11244 11244 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3106 3123 26281.5228 19228.30488 22754.91384 4.357075195 0.427039 26 77 SH2475 2475 Phe5 3' flank 29.358854 84.423052 56.890953 1.755043209 0.42689 173 13 SH9319 9319 RUF1 RUF1 171 190 30.662091 89.211968 59.9370295 1.777695215 0.426534 13 67 SH4644 4644 snR3 snR3 136 153 28.809619 81.601616 55.2056175 1.741983272 0.426359 157 80 SH13422 13422 MT COX1 intronic 31.441157 121.937949 31.441157 91.496792 61.4689745 1.788655968 0.426313 104 86 SH3257 3257 Thr1 3' flank 28.892808 82.091023 55.4919155 1.744229716 0.42604 213 100 SH10934 10934 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1556 1573 64.554314 128.168404 96.361359 1.983902916 0.42532 34 14 SH10870 10870 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1236 1252 42246.61661 29231.73649 35739.17655 4.553144542 0.425194 108 103 SH8216 8216 snoRNA cluster 3; snR51 364.569671 809.720633 364.569671 446.150962 405.3603165 2.60784123 0.424991 73 21 SH11067 11067 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2221 2240 390.213724 473.507536 431.86063 2.635343614 0.423582 24 17 SH11806 11806 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5916 5931 312.263583 391.359931 351.811757 2.546310349 0.423257 20 46 SH21855 21855 copy of SH17800 34.058164 95.637706 64.847935 1.811896151 0.422995 121 41 SH15331 15331 YAL003W_1_142172_143158_INTRON_81_446 3' exon 29.415965 113.313942 29.415965 84.897977 57.156971 1.757069206 0.422871 132 30 SH5295 5295 snR30 snR30 326 338 613.489053 702.310282 657.8996675 2.818159667 0.421928 6 72 SH5781 5781 snR35 snR35 91 105 29.107656 83.677649 56.3926525 1.751222523 0.421535 83 4 SH20842 20842 YLL050C spliced 58.22087 121.728447 89.9746585 1.954120207 0.421077 184 46 SH17867 17867 YLL050C_12_40413_39803_INTRON_15_193 intron 27.822847 103.481575 27.822847 76.658728 52.2407875 1.718009715 0.420676 123 49 SH1399 1399 Leu1 tRNA-intron/exon 66 82 420.790653 506.486029 463.638341 2.666179343 0.420368 139 102 SH3860 3860 RNaseP RNaseP 266 280 31.954245 92.595789 62.275017 1.794313855 0.420031 114 46 SH19502 19502 YPT1 47.046365 109.809989 78.428177 1.89447212 0.420026 122 97 SH4622 4622 snR3 snR3 26 42 549.668466 639.029981 594.3492235 2.7740417 0.419609 114 56 SH2246 2246 Phe1 3' flank 51.011896 114.113701 82.5627985 1.916784405 0.419055 66 80 SH5178 5178 snR13 snR13 46 61 37.174808 99.244325 68.2095665 1.833845289 0.418941 15 10 SH18647 18647 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.927281 115.99346 29.927281 87.066179 58.49673 1.767131589 0.41849 133 95 SH5739 5739 snR34 3' 343.427532 425.817945 384.6227385 2.585034956 0.417787 13 80 SH17871 17871 YLL050C_12_40413_39803_INTRON_15_193 intron/exon 37.963842 137.101909 37.963842 100.138067 69.0509545 1.839169686 0.417715 51 45 SH11098 11098 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2376 2391 396.961297 482.403058 439.6821775 2.643138862 0.4177 98 92 SH647 647 Gln2 tRNA 21 38 34.711728 96.661857 65.6867925 1.817478056 0.41746 148 22 SH6771 6771 snR50 snR50 31 48 37.280331 99.431403 68.355867 1.834775796 0.417362 197 104 SH5652 5652 snR34 snR34 181 198 290.935501 370.236373 330.585937 2.519284375 0.417261 195 66 SH4911 4911 snR9 5' 165.162264 237.207259 201.1847615 2.303595083 0.416927 110 39 SH720 720 Gln3 3' flank 31.085024 91.40693 61.245977 1.787077567 0.416756 97 90 SH3467 3467 Trp1 3' flank 822.825271 912.371824 867.5985475 2.938318816 0.416137 87 88 SH4180 4180 telomerase RNA 5' 31.38598 91.927863 61.6569215 1.789981837 0.415699 82 103 SH5052 5052 snR10 3' 59.146297 123.066567 91.106432 1.959549039 0.415612 136 43 SH383 383 Asn1 5' flank - tRNA12 5' flank 12 382.663973 468.170572 425.4172725 2.628815119 0.414998 6 56 SH6333 6333 snR43 5' 118.137146 187.088964 152.613055 2.183591686 0.414811 164 76 SH8474 8474 snoRNA cluster 5 3' 30.690558 119.84381 30.690558 90.153252 60.421905 1.781194414 0.414652 115 20 SH7664 7664 snoRNA cluster1 snR78 28.455692 108.071642 28.455692 80.61595 54.535821 1.736681856 0.414587 150 30 SH5187 5187 snR13 snR13 91 108 29.760971 86.731185 58.246078 1.765266687 0.414426 141 89 SH748 748 Gln4 tRNA 11 28 33.244246 94.860413 64.0523295 1.806534929 0.414145 27 20 SH10575 10575 RUF8 RUF8 801 815 37.395459 99.738223 68.566841 1.836114141 0.413509 126 97 SH10927 10927 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1521 1536 34.1101 96.193834 65.151967 1.813927532 0.413213 110 36 SH8555 8555 snR19 / U1 RNA U1 271 287 30.806565 90.731983 60.769274 1.783684048 0.412574 153 34 SH1550 1550 Leu4 5' flank 38.01747 100.459012 69.238241 1.840346026 0.412366 204 20 SH835 835 Glu2 5' flank 35.194011 97.432772 66.3133915 1.82160124 0.412304 165 100 SH507 507 Asp2 3' flank 47.080098 110.282745 78.6814215 1.895872198 0.412244 127 63 SH11812 11812 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5946 5967 36.903202 99.27947 68.091336 1.833091855 0.412217 30 85 SH705 705 Gln3 tRNA 56 68 457.195285 547.247532 502.2214085 2.700895222 0.411865 113 97 SH13178 13178 MT COX1 Exon4 82.346636 229.641516 82.346636 148.29488 115.320758 2.061907488 0.411169 60 76 SH10557 10557 RUF8 RUF8 711 725 76.412067 141.895793 109.15393 2.038039377 0.410845 61 91 SH15933 15933 YDL115C_4_255042_253994_INTRON_1_88 5' exon 443.542654 976.032101 443.542654 533.489447 488.5160505 2.688878837 0.410593 46 30 SH7295 7295 snR66 5' 444.812288 534.8366 489.824444 2.690040454 0.410525 106 81 SH2508 2508 Pro1 tRNA 31 43 669.293298 763.980853 716.6370755 2.855299273 0.409753 107 30 SH18592 18592 YNL069C_14_494998_493953_INTRON_29_477 5' exon 802.110186 1697.269516 802.110186 896.15933 849.134758 2.928976618 0.409154 191 96 SH3719 3719 Val3 3' flank 27.720369 77.027928 52.3741485 1.719116975 0.408942 102 8 SH2960 2960 Ser1 tRNA 31 48 31.06048 91.751168 61.405824 1.788209564 0.408883 138 93 SH9909 9909 RUF5-1 RUF5-1 351 370 41.576045 104.424861 73.000453 1.863325555 0.408603 122 88 SH19423 19423 YPR132W_16_794960_795762_INTRON_66_430 intron 625.069905 1344.439008 625.069905 720.369103 672.719504 2.827834019 0.408025 202 89 SH2898 2898 Pro8 tRNA 11 28 38.683373 101.39577 70.0395715 1.84534348 0.408023 121 45 SH14917 14917 MT tRNA Tyr tRNA 32.774514 126.246899 32.774514 94.472385 63.6234495 1.803617212 0.407616 105 43 SH21237 21237 YOR293W spliced 48.514116 112.142904 80.32851 1.904869711 0.406992 47 62 SH8921 8921 LSR1 / U2 RNA 3' 194.212921 269.881778 232.0473495 2.365576612 0.405818 136 25 SH12092 12092 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7346 7364 41.311382 104.304724 72.808053 1.862179418 0.405578 77 37 SH18742 18742 YNL162W_14_331319_332151_INTRON_5_516 intron 353.803595 793.085204 353.803595 440.281609 397.042602 2.598837108 0.405533 125 41 SH21874 21874 copy of SH18249 30.163059 88.836711 59.499885 1.774516126 0.405473 35 27 SH12298 12298 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 46.227323 154.947559 46.227323 109.720236 77.9737795 1.891948586 0.405469 188 2 SH7409 7409 snR69 5' 30.063892 88.491666 59.277779 1.772891923 0.405128 45 57 SH8158 8158 snoRNA cluster 3; snR70 39.95592 141.864833 39.95592 102.908913 71.4324165 1.853895342 0.405012 107 100 SH6724 6724 snR49 snR49 146 162 133.747157 205.202705 169.474931 2.229105466 0.404876 48 35 SH8389 8389 snoRNA cluster 5 snR190 38.404989 138.661409 38.404989 101.25642 69.8307045 1.844046424 0.404751 114 39 SH18731 18731 YNL147W_14_350937_351380_INTRON_19_138 intron/exon 500.391333 1094.020206 500.391333 594.628873 547.510103 2.738392137 0.404629 139 32 SH5932 5932 snR36 snR36 116 132 37.401602 100.193465 68.7975335 1.837572868 0.404224 193 93 SH3757 3757 Val4 tRNA 11 26 171.638904 245.984803 208.8118535 2.319755148 0.403826 164 13 SH2509 2509 Pro1 tRNA 36 48 557.099893 653.34958 605.2247365 2.78191667 0.403514 60 20 SH5642 5642 snR34 snR34 131 147 269.567868 350.663549 310.1157085 2.491523765 0.403485 98 39 SH11262 11262 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S/ITS2 3196 3213 73.94608 139.769623 106.8578515 2.028806438 0.403369 56 59 SH10578 10578 RUF8 RUF8 816 832 33.817764 96.288631 65.0531975 1.813268648 0.403122 197 9 SH4123 4123 SRP RNA SRP RNA 506 518 2854.674588 2781.50784 2818.091214 3.449955046 0.402759 157 104 SH4860 4860 snR8 snR8 81 93 174.229089 248.948029 211.588559 2.325492181 0.402681 176 11 SH17347 17347 YIL018W_9_316766_317930_INTRON_5_404 intron 31.334809 122.829403 31.334809 92.494594 61.9147015 1.791793783 0.402487 44 74 SH71 71 Ala2 5' flank - tRNA6 5' flank 6 164.389916 238.573852 201.481884 2.304236003 0.401648 196 31 SH6920 6920 snR58 5' 42.122667 105.418706 73.7706865 1.867883825 0.401277 108 86 SH10873 10873 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1251 1264 42607.13619 29913.83097 36260.48358 4.559433592 0.401266 202 62 SH9498 9498 RUF2 3' 30.813432 91.58697 61.200201 1.786752849 0.400979 188 58 SH21165 21165 YNL302C spliced 29.137993 85.338633 57.238313 1.757686825 0.400978 85 51 SH2345 2345 Phe3 tRNA-intron/exon 51 67 994.003209 1089.340228 1041.671719 3.017730873 0.400764 18 31 SH8901 8901 LSR1 / U2 RNA U2 1146 1161 72.74447 138.683326 105.713898 2.024132087 0.400659 47 82 SH19967 19967 YBL072C spliced 623.599644 722.392864 672.996254 2.828012647 0.400537 114 50 SH87 87 Ala2 tRNA + 3' flank 71 3' flank 30.088113 88.921069 59.504591 1.774550474 0.400256 62 8 SH4109 4109 SRP RNA SRP RNA 436 448 38667.21579 27485.35346 33076.28463 4.51951672 0.400184 86 96 SH16859 16859 YGL187C_7_150529_149708_INTRON_1_342 exon/intron 29.212163 113.880953 29.212163 85.66879 57.4404765 1.759218034 0.400152 145 104 SH3673 3673 Val2 3' flank 33.408297 95.821423 64.61486 1.810332408 0.400086 188 26 SH7692 7692 snoRNA cluster1 intergenic 92.35304 251.649107 92.35304 160.296067 126.3245535 2.101487772 0.399331 65 13 SH12629 12629 MT_15S MT_15S 30.096674 118.138507 30.096674 89.041833 59.5692535 1.775022158 0.398985 21 74 SH8043 8043 snoRNA cluster 2 intergenic 26.774677 98.369001 26.774677 72.594324 49.6845005 1.696220928 0.398674 47 86 SH10601 10601 RUF8 RUF8 931 947 30.859619 91.933828 61.3967235 1.788145195 0.398574 31 104 SH11784 11784 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5806 5819 38900.91746 27661.28322 33281.10034 4.522197676 0.398528 2 42 SH606 606 Gln1 71-72 + 3' flank 71 3' flank 30.914258 92.101815 61.5080365 1.788931863 0.396972 190 37 SH20204 20204 YDR025W spliced 444.917848 539.673258 492.295553 2.692225913 0.39693 125 35 SH13436 13436 MT COX1 intronic 30.620332 120.776649 30.620332 91.156317 60.8883245 1.784534023 0.396859 65 102 SH6289 6289 snR42 snR42 226 243 78.67177 145.471767 112.0717685 2.049496225 0.396602 6 13 SH18915 18915 YOL120C_15_94401_93394_INTRON_113_559 3' exon 31.292728 123.013819 31.292728 92.721091 62.0069095 1.792440086 0.396533 139 42 SH9471 9471 RUF2 RUF2 196 212 30.069403 89.144088 59.6067455 1.77529541 0.396061 100 88 SH10834 10834 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1056 1076 64.165288 129.78717 96.976229 1.986665292 0.395628 212 73 SH5951 5951 snR36 snR36 211 228 34.347894 97.285222 65.816558 1.818335166 0.395555 96 74 SH12056 12056 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7166 7182 30.508677 90.915231 60.711954 1.783274211 0.39435 141 33 SH21342 21342 YPR098C spliced 37.814896 101.129409 69.4721525 1.841810755 0.394276 162 39 SH17251 17251 YHR097C_8_298611_297387_INTRON_126_249 intron 28.333342 109.000609 28.333342 81.667267 55.0003045 1.740365094 0.393724 178 31 SH16583 16583 YFL034C-A_6_64931_64242_INTRON_13_333 5' exon 220.1772 519.063276 220.1772 299.886076 260.031638 2.415026192 0.393646 10 10 SH11018 11018 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1976 1994 164.044915 239.370451 201.707683 2.304722441 0.393542 66 25 SH2098 2098 Lys4 3' flank 30.577155 91.23196 60.9045575 1.784649792 0.393529 62 86 SH7899 7899 snoRNA cluster1 intergenic 31.172914 122.884256 31.172914 92.711342 61.942128 1.791986121 0.392889 59 18 SH17710 17710 YKL081W_11_282533_284097_INTRON_206_531 intron 36.722956 135.749052 36.722956 100.026096 68.374526 1.834894329 0.39272 117 58 SH7917 7917 snoRNA cluster1 snR72 29.367441 115.147065 29.367441 86.779624 58.0735325 1.763978244 0.392272 117 101 SH16115 16115 YDR064W_4_579453_580447_INTRON_22_560 intron 47.639208 158.675227 47.639208 112.036019 79.8376135 1.902207547 0.392116 105 61 SH11882 11882 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6296 6314 32.862869 95.38933 64.1260995 1.807034825 0.392115 9 95 SH11166 11166 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2716 2736 28.400083 82.238759 55.319421 1.742877626 0.391423 65 38 SH1412 1412 Leu1 3' flank 116.749197 188.142094 152.4456455 2.183115024 0.39129 38 95 SH7046 7046 snR62 snR62 21 41 29.790122 88.444352 59.117237 1.771714128 0.391074 174 11 SH7043 7043 snR62 snR62 6 27 31.041401 92.606053 61.823727 1.791155183 0.390796 193 69 SH8215 8215 snoRNA cluster 3; snR51 172.452379 420.276128 172.452379 248.823749 210.638064 2.323536854 0.390776 147 73 SH6594 6594 snR47 snR47 76 92 33.20896 95.995469 64.6022145 1.810247405 0.390673 162 70 SH9085 9085 snR14 / U4 RNA U4 41 58 30.443465 90.957569 60.700517 1.78319239 0.390309 3 44 SH3170 3170 Ser5 5' flank 33.16316 95.970015 64.5665875 1.810007834 0.389791 52 69 SH8810 8810 LSR1 / U2 RNA U2 691 703 690.695041 795.739791 743.217416 2.871115878 0.389611 36 52 SH5615 5615 snR34 5' - 12 -4 12 36.789564 100.249479 68.5195215 1.835814321 0.389587 26 103 SH11411 11411 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3941 3957 30.766301 92.248746 61.5075235 1.788928241 0.389164 85 52 SH10095 10095 RUF6 RUF6 321 337 33.804753 96.974198 65.3894755 1.815507854 0.389154 53 48 SH11811 11811 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5941 5963 30.344061 90.715205 60.529633 1.781968041 0.388442 188 68 SH10165 10165 RUF6 RUF6 671 683 41.729345 105.656201 73.692773 1.867424899 0.388381 23 66 SH2623 2623 Pro3 tRNA-intron/exon 66 78 183.96 261.670063 222.8150315 2.347944486 0.388231 209 90 SH11564 11564 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4706 4723 808.984863 915.392361 862.188612 2.935602282 0.388133 60 32 SH3854 3854 RNaseP RNaseP 236 250 168.423591 244.880816 206.6522035 2.31524004 0.388094 115 22 SH9388 9388 RUF1 RUF1 516 537 60.801702 126.711643 93.7566725 1.972002185 0.386861 11 24 SH17423 17423 YIL111W_9_155219_155762_INTRON_2_89 intron 155.014943 384.559373 155.014943 230.54443 192.7796865 2.28506127 0.386824 84 101 SH20569 20569 YHR010W spliced 52.228694 117.402478 84.815586 1.928475667 0.386432 10 93 SH10770 10770 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 736 749 94.247507 163.603373 128.92544 2.110338622 0.385946 21 13 SH4872 4872 snR8 snR8 141 157 32.936805 95.834876 64.3858405 1.808790369 0.385587 114 104 SH20875 20875 YLR185W spliced 372.759299 466.569898 419.6645985 2.622902335 0.385226 45 86 SH21915 21915 copy of SH19998 94.479206 163.9353 129.207253 2.111286893 0.38511 184 77 SH6699 6699 snR49 snR49 21 36 29.77587 88.807817 59.2918435 1.772994954 0.385076 76 6 SH8238 8238 snoRNA cluster 3; 3' 57.662472 180.100074 57.662472 123.437602 90.550037 1.956888632 0.385051 15 59 SH19255 19255 YPL129W_16_305297_306136_INTRON_10_114 3' exon 155.935385 386.764579 155.935385 231.829194 193.8822895 2.28753814 0.384698 38 48 SH8766 8766 LSR1 / U2 RNA U2 471 486 359.46747 452.403774 405.935622 2.608457164 0.384598 210 19 SH11114 11114 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2456 2473 85.631726 154.17956 119.905643 2.078839622 0.384364 152 67 SH3183 3183 Ser5 tRNA 36 52 278.79755 364.891021 321.8442855 2.507645802 0.384356 72 64 SH3952 3952 RNase MRP RNaseMRP 176 192 30.811847 92.559446 61.6856465 1.790184121 0.384311 137 20 SH2858 2858 Pro7 96-103 + 3' flank 96 28.795449 85.119878 56.9576635 1.755552165 0.384274 72 22 SH486 486 Asp2 5' flank - tRNA7 5' flank 7 32.562733 95.32757 63.9451515 1.805807621 0.384147 39 41 SH11185 11185 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2811 2828 30.912638 92.755459 61.8340485 1.791227682 0.383596 37 32 SH7978 7978 snoRNA cluster 2 snR57 42.255626 147.768327 42.255626 106.512701 74.3841635 1.871480483 0.383588 126 59 SH8773 8773 LSR1 / U2 RNA U2 506 524 33.115525 96.221939 64.668732 1.810694346 0.383413 102 35 SH5166 5166 snR13 5' - 3 -14 3 95.301278 165.015218 130.158248 2.114471694 0.383195 150 44 SH4269 4269 telomerase RNA telomerase 381 399 28.081937 81.189634 54.6357855 1.737477191 0.382413 15 29 SH10877 10877 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1271 1284 40568.57135 29005.48845 34787.0299 4.54141735 0.382384 191 74 SH16178 16178 YDR305C_4_1073479_1072737_INTRON_88_176 intron 27.357144 103.478425 27.357144 77.121281 52.2392125 1.717996621 0.382377 30 81 SH15751 15751 YCR031C_3_178212_177492_INTRON_8_314 intron 30.088573 119.288587 30.088573 90.200014 60.1442935 1.779194428 0.38208 7 19 SH8390 8390 snoRNA cluster 5 snR190 30.085812 119.294637 30.085812 90.208825 60.1473185 1.77921627 0.381808 43 74 SH10800 10800 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS/18S 886 904 49.274486 114.426726 81.850606 1.913021899 0.381689 70 63 SH11610 11610 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4936 4951 278.259201 364.935524 321.5973625 2.507312478 0.381632 122 16 SH10097 10097 RUF6 RUF6 331 347 30.471893 91.733031 61.102462 1.78605871 0.380993 116 48 SH5021 5021 snR10 snR10 136 152 29.504462 88.076962 58.790712 1.76930872 0.380858 99 55 SH8795 8795 LSR1 / U2 RNA U2 616 635 29.68997 88.786828 59.238399 1.772603313 0.380723 142 57 SH15648 15648 YBR189W_2_604466_605466_INTRON_8_420 intron 33.102392 128.456119 33.102392 96.353727 64.7280595 1.811092587 0.380437 43 51 SH15710 15710 YBR220C_2_663261_662457_INTRON_302_722 intron 84.906044 237.653802 84.906044 153.747758 119.326901 2.076738362 0.380061 186 24 SH3193 3193 Ser5 3' flank 30.162143 90.668851 60.415497 1.781148353 0.379406 58 99 SH20929 20929 YLR388W spliced 53.834169 119.60617 86.7201695 1.938120118 0.379178 60 83 SH11084 11084 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2306 2322 35527.99468 25873.88099 30700.93784 4.487151642 0.378566 77 15 SH508 508 Asp2 3' flank 41.671804 106.121496 73.89665 1.868624751 0.378409 144 36 SH16833 16833 YGL178W_7_167356_170575_INTRON_4_643 intron 34.78369 132.369723 34.78369 98.586033 66.6848615 1.824027254 0.378384 118 103 SH7362 7362 snR68 snR68 31 45 946.628493 1058.591716 1002.610105 3.001132077 0.378273 117 62 SH1262 1262 Ile2 tRNA 6 22 56.450175 122.53852 89.4943475 1.951795606 0.378251 63 18 SH18405 18405 YMR125W_13_517538_520445_INTRON_26_347 intron 29.530155 116.905854 29.530155 88.375699 58.952927 1.770505373 0.377944 142 89 SH8770 8770 LSR1 / U2 RNA U2 491 503 174.292213 252.794359 213.543286 2.329485921 0.377928 50 67 SH11717 11717 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5471 5484 34.784216 98.62922 66.706718 1.824169574 0.377491 14 47 SH16711 16711 YGL031C_7_438393_437938_INTRON_1_456 intron 93.597533 256.279181 93.597533 163.681648 128.6395905 2.109374649 0.377363 102 4 SH1731 1731 Leu7 5' flank 39.507798 103.85505 71.681424 1.855406624 0.376814 11 40 SH6640 6640 snR48 snR48 26 45 31.817706 94.532703 63.1752045 1.800546656 0.376741 122 3 SH17430 17430 YIL133C_9_99416_98527_INTRON_32_321 intron 34.697571 132.283751 34.697571 98.58618 66.6418755 1.823747211 0.376356 77 81 SH16631 16631 YFL039C_6_54695_53260_INTRON_11_318 3' exon 28.041487 108.515178 28.041487 81.473691 54.757589 1.738444318 0.376254 94 84 SH7868 7868 snoRNA cluster1 snR73 35.940211 134.918429 35.940211 99.978218 67.9592145 1.83224835 0.376106 95 75 SH11154 11154 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2656 2671 250.243919 335.782708 293.0133135 2.466887354 0.37608 170 99 SH20378 20378 YFL034C-A spliced 301.91717 392.165335 347.0412525 2.540381102 0.375535 60 86 SH7720 7720 snoRNA cluster1 snR77 42.277201 148.253635 42.277201 106.976434 74.6268175 1.872894921 0.375412 5 19 SH7867 7867 snoRNA cluster1 snR73 45.340441 154.76302 45.340441 110.422579 77.88151 1.891434363 0.375207 85 79 SH5684 5684 snR34 snR34 341 357 29.717914 89.280876 59.499395 1.77451255 0.375167 86 97 SH1568 1568 Leu4 tRNA 11 23 77.054942 145.41728 111.236111 2.046245797 0.375158 206 69 SH10571 10571 RUF8 RUF8 781 795 35.551893 99.598591 67.575242 1.82978761 0.375098 133 104 SH16211 16211 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 75.986644 219.241602 75.986644 144.254958 110.120801 2.041869362 0.374888 124 26 SH1123 1123 Gly4 3' flank 30.301644 91.530567 60.9161055 1.78473213 0.374784 146 88 SH14861 14861 MT tRNA Ser2; tRNA Arg2 tRNA Ser / tRNA Arg2 39.195731 141.823808 39.195731 103.628077 71.411904 1.853770612 0.374607 111 100 SH19518 19518 ACT1 56.736441 123.107076 89.9217585 1.953864791 0.374356 15 97 SH11491 11491 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4341 4354 40419.51973 29069.35239 34744.43606 4.540885267 0.374037 117 74 SH9175 9175 snR7 U5 RNA U5 146 160 86.899163 156.479447 121.689305 2.085252411 0.373955 164 95 SH14092 14092 MT COB Cytbi4 27.826082 107.291064 27.826082 80.464982 54.145532 1.733562625 0.373664 186 40 SH15722 15722 YBR255C-A_2_727032_726576_INTRON_64_157 intron 30.603519 122.38695 30.603519 92.783431 61.693475 1.790239233 0.372963 152 80 SH3152 3152 Ser4 3' flank 34.010329 97.977155 65.993742 1.819502755 0.372826 74 23 SH12517 12517 MT_ORF6 + ORF7 (hypothetical) ORF6/7 31.188966 123.924793 31.188966 93.735827 62.4623965 1.795618643 0.372701 191 92 SH9552 9552 RUF3 RUF3 146 160 30.396718 92.076127 61.2364225 1.787009811 0.372256 125 22 SH7150 7150 snR63 3' 30.386147 92.058755 61.222451 1.786910712 0.371936 202 70 SH15319 15319 YAL003W_1_142172_143158_INTRON_81_446 intron 28.909426 114.355916 28.909426 86.44649 57.677958 1.761009876 0.371853 128 71 SH501 501 Asp2 66-72 + 3'flank 66 82 30.422357 92.220063 61.32121 1.787610716 0.371623 86 27 SH4871 4871 snR8 snR8 136 152 30.318307 91.833799 61.076053 1.785870963 0.371454 109 45 SH9874 9874 RUF5-1 RUF5-1 176 192 29.71242 89.53446 59.62344 1.775417029 0.371254 50 90 SH4574 4574 U3b (snR17b) U3b 426 440 1310.795709 1422.039477 1366.417593 3.135583445 0.370966 145 60 SH8022 8022 snoRNA cluster 2 snR55 30.203484 120.638121 30.203484 91.434637 60.8190605 1.784039707 0.370894 119 46 SH2029 2029 Lys3 91-96 + 3' flank 91 108 30.851699 93.306985 62.079342 1.792947105 0.370451 46 78 SH11413 11413 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3951 3967 838.877952 956.142719 897.5103355 2.953039459 0.37044 171 21 SH3910 3910 RNase MRP 5' 28.734459 85.891875 57.313167 1.758254407 0.370277 187 93 SH3989 3989 RNase MRP 3' 28.59234 85.180829 56.8865845 1.755009859 0.370052 21 12 SH18364 18364 YMR079W_13_424988_426058_INTRON_10_165 5' exon 36.290062 135.955962 36.290062 100.6659 68.477981 1.835550947 0.369844 62 28 SH17161 17161 YHR016C_8_138446_136872_INTRON_48_215 intron 32.235417 126.80745 32.235417 95.572033 63.903725 1.805526174 0.369204 64 36 SH21397 21397 Pro2_7 spliced 93.440313 164.307615 128.873964 2.110165187 0.368738 125 52 SH12346 12346 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 43.400047 151.015979 43.400047 108.615932 76.0079895 1.880859245 0.36872 102 17 SH2429 2429 Phe5 5' flank 27.698773 80.152533 53.925653 1.731795413 0.368695 53 23 SH8239 8239 snoRNA cluster 3; 3' 31.006315 123.693023 31.006315 93.686708 62.3465115 1.794812158 0.367807 188 94 SH5150 5150 snR13 5' 32.49453 96.061061 64.2777955 1.808060974 0.367607 35 38 SH14601 14601 MT 21S rRNA Sce1 endonuc 28.865691 114.440893 28.865691 86.575202 57.7204465 1.761329682 0.367518 166 12 SH21164 21164 YNL302C spliced 30.549297 92.964549 61.756923 1.790685649 0.367513 75 44 SH2652 2652 Pro4 5' flank 31.532412 94.545295 63.0388535 1.799608306 0.36747 66 17 SH6764 6764 snR50 5' - 15 -4 15 43.73108 109.062212 76.396646 1.883074292 0.367394 71 16 SH3019 3019 Ser2 tRNA 56 68 95.393493 166.649189 131.021341 2.11734204 0.367065 180 75 SH578 578 Gln1 5' flank 31.777055 94.957518 63.3672865 1.80186511 0.367014 111 99 SH11072 11072 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2246 2264 42.067138 107.201507 74.6343225 1.872938595 0.366763 145 17 SH11506 11506 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4416 4434 37.297543 101.928598 69.6130705 1.84269079 0.366592 3 11 SH9351 9351 RUF1 RUF1 331 348 32.947781 96.825976 64.8868785 1.812156882 0.366537 83 7 SH8457 8457 snoRNA cluster 5 snR128 29.666801 118.370528 29.666801 89.703727 59.685264 1.775867119 0.366371 143 22 SH2085 2085 Lys4 91-96 + 3' flank 91 108 31.531794 94.606422 63.069108 1.799816689 0.366233 150 25 SH11147 11147 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2621 2639 45260.45679 32282.93074 38771.69376 4.588514774 0.365858 98 21 SH16147 16147 YDR092W_4_629869_630598_INTRON_31_298 intron 35.89106 135.312836 35.89106 100.421776 68.156418 1.833506758 0.365832 114 92 SH21423 21423 Trp1 spliced 166.994865 246.653772 206.8243185 2.315601602 0.365678 22 83 SH18727 18727 YNL147W_14_350937_351380_INTRON_19_138 intron 28.810543 114.311681 28.810543 86.501138 57.6558405 1.760843308 0.365528 60 57 SH2506 2506 Pro1 tRNA 21 36 62.108753 129.636024 95.8723885 1.981693547 0.365168 88 52 SH10268 10268 RUF7 5' 574.352185 688.037403 631.194794 2.800163408 0.36482 159 46 SH17408 17408 YIL106W_9_166412_167441_INTRON_21_105 5' exon 30.809786 123.333496 30.809786 93.52371 62.166748 1.79355815 0.364719 29 50 SH20686 20686 YIL133C spliced 30.950933 93.761623 62.356278 1.794880185 0.36451 4 91 SH9298 9298 RUF1 RUF1 66 83 30.497124 93.030332 61.763728 1.790733502 0.364428 89 43 SH6000 6000 snR37 5' 31.691518 94.992545 63.3420315 1.801691988 0.36362 89 59 SH488 488 Asp2 tRNA 1 18 2073.75768 2152.965289 2113.361485 3.324973788 0.363617 27 81 SH5616 5616 snR34 snR34 1 17 29.67672 89.9534 59.81506 1.776810543 0.363367 190 13 SH20660 20660 YIL052C spliced 176.760307 257.783009 217.271658 2.337003078 0.363263 43 70 SH6969 6969 snR60 5' 36.280791 100.991813 68.636302 1.836553876 0.362949 206 95 SH4807 4807 snR5 3' 28.034384 82.556384 55.295384 1.742688878 0.362902 6 26 SH11299 11299 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3381 3398 916.490837 1039.350971 977.920904 2.99030373 0.362485 34 80 SH11810 11810 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5936 5956 27.940086 82.073881 55.0069835 1.74041783 0.362178 14 15 SH12211 12211 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.908016 119.843911 29.908016 90.935895 60.4219555 1.781194777 0.362029 107 42 SH9619 9619 RUF3 3' 29.975328 91.21294 60.594134 1.782430583 0.361773 21 96 SH7593 7593 snR189 snR189 36 52 84.334229 154.689363 119.511796 2.077410773 0.36173 153 72 SH15163 15163 MT tRNA Val tRNA 31.07866 124.18649 31.07866 94.10783 62.593245 1.796527467 0.361691 182 18 SH8844 8844 LSR1 / U2 RNA U2 861 877 57.176431 124.423446 90.7999385 1.958085554 0.3616 203 64 SH3118 3118 Ser4 5' flank - tRNA10 10 117.561575 192.384675 154.973125 2.190256391 0.361456 135 37 SH21389 21389 Phe1_5 spliced 253.936964 342.917394 298.427179 2.474838374 0.361452 138 38 SH19566 19566 AEP2/ATP13 0.6 30.116164 91.780971 60.9485675 1.784963503 0.361411 3 31 SH10555 10555 RUF8 RUF8 701 718 27.995642 82.464947 55.2302945 1.742177359 0.36134 164 97 SH11372 11372 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3746 3766 35.608508 100.35194 67.980224 1.832382591 0.360813 146 68 SH8677 8677 LSR1 / U2 RNA U2 26 43 39.131443 104.26299 71.6972165 1.855502295 0.360744 48 104 SH3145 3145 Ser4 3' flank 37.20308 102.115281 69.6591805 1.842978361 0.360718 40 46 SH2507 2507 Pro1 tRNA 26 38 30.482871 93.20525 61.8440605 1.791297996 0.360462 208 103 SH3468 3468 Trp1 3' flank 134.809604 211.866824 173.338214 2.238894317 0.360397 194 77 SH11342 11342 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3596 3609 38904.58649 28365.50966 33635.04808 4.526792053 0.360069 48 64 SH8588 8588 snR19 / U1 RNA U1 436 453 28.175196 83.614947 55.8950715 1.747373516 0.360056 192 94 SH16186 16186 YDR367W_4_1212837_1213603_INTRON_31_131 intron 41.958071 148.402562 41.958071 107.444491 74.701281 1.873328049 0.359932 197 92 SH20658 20658 YIL018W spliced 41.751242 107.205521 74.4783815 1.87203023 0.35992 160 83 SH16485 16485 YER102W_5_362729_363698_INTRON_1_360 intron 29.206308 116.61409 29.206308 88.407782 58.807045 1.769429357 0.359718 83 73 SH17318 17318 YHR203C_8_505526_504472_INTRON_15_283 3' exon 124.943551 324.875607 124.943551 200.932056 162.9378035 2.212021857 0.359581 5 102 SH4927 4927 snR9 snR9 41 57 34.293413 98.933128 66.6132705 1.823560757 0.359516 40 29 SH2343 2343 Phe3 tRNA-intron/exon 41 58 29.910449 91.130562 60.5205055 1.781902547 0.359434 185 97 SH2712 2712 Pro5 5' flank 28.576358 86.03501 57.305684 1.758197701 0.359258 167 30 SH441 441 Asp1 tRNA 26 38 115.923449 190.789096 153.3562725 2.185701544 0.359091 55 13 SH12464 12464 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 131.950456 339.787021 131.950456 208.836565 170.3935105 2.23145305 0.359018 121 19 SH8134 8134 snoRNA cluster 3; snR41 29.186378 116.593674 29.186378 88.407296 58.796837 1.769353964 0.358626 98 33 SH18979 18979 YOR096W_15_505793_506766_INTRON_145_545 intron 204.199604 492.088807 204.199604 288.889203 246.5444035 2.391895149 0.358473 172 41 SH21238 21238 YOR293W spliced 31.207723 94.495183 62.851453 1.798315322 0.358103 24 102 SH21702 21702 copy of SH10877 41630.64147 30147.16455 35888.90301 4.554960184 0.358028 66 29 SH11423 11423 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4001 4016 18437.41173 14725.95908 16581.68541 4.219628671 0.357798 68 55 SH6437 6437 snR45 snR45 31 50 32.826688 97.089671 64.9581795 1.812633845 0.357726 93 20 SH21842 21842 copy of SH17172 44.370426 110.320296 77.345361 1.888434271 0.357631 154 10 SH21356 21356 YPR187W spliced 558.672188 674.856604 616.764396 2.790119295 0.357403 60 45 SH11357 11357 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3671 3684 51899.61371 36619.46223 44259.53797 4.646006876 0.357214 185 82 SH362 362 Arg5 3' flank 30.350338 93.008799 61.6795685 1.790141327 0.356951 139 5 SH10558 10558 RUF8 RUF8 716 732 33.253558 97.799865 65.5267115 1.816418373 0.356935 108 91 SH1770 1770 Leu7 3' flank 80.49205 150.741457 115.6167535 2.06302077 0.356926 41 91 SH11371 11371 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3741 3758 110.745702 185.143286 147.944494 2.170098807 0.356688 123 67 SH17120 17120 YHR010W_8_126513_127484_INTRON_32_592 intron 29.89156 120.154936 29.89156 91.263376 60.577468 1.782311117 0.35656 208 3 SH11456 11456 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4166 4179 222.045385 308.94037 265.4928775 2.424052875 0.356555 205 33 SH18073 18073 YLR344W_12_819312_820142_INTRON_20_466 intron 165.42576 410.715276 165.42576 246.289516 205.857638 2.313566985 0.356551 180 92 SH8564 8564 snR19 / U1 RNA U1 316 332 71.922322 141.129759 106.5260405 2.027455785 0.356539 23 5 SH12453 12453 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.115998 131.997327 34.115998 98.881329 66.4986635 1.822812917 0.356361 209 19 SH7560 7560 snR79 3' 39.385241 104.773151 72.079196 1.857809934 0.356214 179 102 SH1457 1457 Leu2 tRNA-intron/exon 56 72 188.867372 272.307981 230.5876765 2.362836093 0.356172 27 7 SH897 897 Glu3 5' flank - tRNA15 15 459.622502 569.981323 514.8019125 2.711640152 0.356056 56 2 SH8763 8763 LSR1 / U2 RNA U2 456 475 45.319532 111.475668 78.3976 1.894302768 0.356025 91 3 SH9756 9756 RUF4 RUF4 556 571 44.369437 110.423344 77.3963905 1.888720707 0.355755 186 103 SH3971 3971 RNase MRP RNaseMRP 271 285 30.251061 92.732594 61.4918275 1.7888174 0.355464 163 98 SH12766 12766 MT COX1 COX1ai1 29.731855 119.466502 29.731855 90.734647 60.233251 1.779836304 0.355336 107 92 SH11317 11317 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3471 3489 3389.059048 3336.103156 3362.581102 3.526672768 0.354719 178 81 SH11991 11991 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6841 6860 29.708628 90.70593 60.207279 1.779649 0.354481 49 19 SH19713 19713 Negative Control 29.016333 88.047024 58.5316785 1.767390978 0.354417 190 59 SH3656 3656 Val2 tRNA 21 37 29.45919 89.749769 59.6044795 1.7752789 0.354405 9 14 SH11394 11394 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3856 3869 48099.86919 34316.67612 41208.27266 4.61498441 0.354245 132 97 SH3655 3655 Val2 tRNA 16 31 72.350165 141.784892 107.0675285 2.029657778 0.35411 151 53 SH10556 10556 RUF8 RUF8 706 723 33.048315 97.64167 65.3449925 1.815212312 0.353784 109 23 SH10839 10839 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1081 1099 750.898237 876.670315 813.784276 2.910509294 0.353722 57 27 SH655 655 Gln2 tRNA 61 77 35.84506 100.982512 68.413786 1.835143625 0.353267 191 3 SH10984 10984 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1806 1826 171.383156 253.436149 212.4096525 2.327174248 0.352862 64 20 SH8902 8902 LSR1 / U2 RNA U2 1151 1163 47.207931 113.821978 80.5149545 1.905876552 0.352669 184 85 SH10094 10094 RUF6 RUF6 316 335 28.504473 86.210233 57.357353 1.758589101 0.352462 208 62 SH4846 4846 snR8 snR8 11 29 28.541295 86.368997 57.455146 1.759328933 0.352352 184 94 SH6025 6025 snR37 snR37 41 60 28.701291 86.995528 57.8484095 1.762291423 0.352144 99 90 SH15606 15606 YBR119W_2_479296_480281_INTRON_9_97 intron 34.67568 133.403445 34.67568 99.727765 67.2017225 1.827380405 0.352027 75 6 SH8027 8027 snoRNA cluster 2 snR55 54.577699 175.693093 54.577699 122.115394 88.3465465 1.946189577 0.352008 78 50 SH18207 18207 YML024W_13_225889_226697_INTRON_4_401 intron/exon 43.511714 152.184554 43.511714 109.67284 76.592277 1.884184981 0.351781 27 11 SH21159 21159 YNL301C spliced 33.01297 97.694552 65.353761 1.815270586 0.351693 88 2 SH11728 11728 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5526 5546 109.104552 183.819131 146.4618415 2.16572449 0.351657 208 39 SH6425 6425 snR45 5' 26.644337 75.514158 51.0792475 1.708244491 0.351565 74 61 SH2389 2389 Phe4 5- flank - tRNA12 12 44.243376 110.518527 77.3809515 1.888634066 0.351488 30 15 SH12229 12229 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.84709 135.9206 35.84709 101.07351 68.4603 1.835438798 0.351451 111 12 SH12227 12227 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 77.32677 223.968042 77.32677 147.641272 112.484021 2.051090833 0.351287 123 61 SH12387 12387 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.499239 128.412461 32.499239 96.913222 64.7062305 1.8109461 0.351113 148 27 SH5650 5650 snR34 snR34 171 191 29.618153 90.600004 60.1090785 1.77894007 0.351056 34 16 SH2583 2583 Pro2 3' flank 27.946574 83.066241 55.5064075 1.74434312 0.350907 100 60 SH18523 18523 YMR225C_13_721402_720959_INTRON_59_205 intron 30.935478 124.354602 30.935478 94.419124 62.677301 1.797110287 0.350845 82 95 SH17548 17548 YJL177W_10_90783_91654_INTRON_310_626 intron/exon 192.999064 469.821998 192.999064 277.822934 235.410999 2.37182675 0.3507 35 75 SH7713 7713 snoRNA cluster1 snR77 345.157715 790.771064 345.157715 446.613349 395.885532 2.59756963 0.350373 175 42 SH6518 6518 snR46 snR46 81 100 29.272599 89.314042 59.2933205 1.773005772 0.350372 106 85 SH8868 8868 LSR1 / U2 RNA U2 981 998 27.125186 78.393034 52.75911 1.722297461 0.350313 29 33 SH11010 11010 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1936 1954 91.522799 163.866003 127.694401 2.106171855 0.350308 170 47 SH5081 5081 snR11 snR11 6 25 28.711288 87.194612 57.95295 1.763075548 0.349792 45 8 SH1720 1720 Leu6 3' flank 29.07339 88.594815 58.8341025 1.769629133 0.349677 120 11 SH19041 19041 YOR234C_15_779404_778554_INTRON_20_546 intron 28.627624 114.516571 28.627624 86.888947 57.7582855 1.761614293 0.349567 171 46 SH16997 16997 YGR118W_7_726968_727725_INTRON_66_385 intron 28.816539 115.43622 28.816539 87.619681 58.21811 1.765058102 0.349488 46 80 SH11516 11516 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4466 4484 47.803458 114.704711 81.2540845 1.909845201 0.349026 2 92 SH9621 9621 RUF3 3' 37.672687 103.252778 70.4627325 1.847959481 0.348646 130 17 SH16104 16104 YDR064W_4_579453_580447_INTRON_22_560 5' exon 327.857725 754.782998 327.857725 427.925273 377.891499 2.577367122 0.348443 75 58 SH10563 10563 RUF8 RUF8 741 757 29.360631 89.812348 59.5864895 1.7751478 0.348118 141 103 SH4166 4166 SRP RNA 3' 49.52835 116.699038 83.113694 1.919672585 0.347779 145 12 SH7357 7357 snR68 snR68 6 25 33.11303 98.099163 65.6060965 1.816944198 0.346937 140 17 SH4483 4483 U3b (snR17b) 5' 26.851372 77.083538 51.967455 1.715731449 0.346838 200 75 SH4707 4707 snR4 snR4 71 83 99.594201 173.435096 136.5146485 2.135179255 0.34666 182 5 SH2123 2123 Met1 tRNA 1 15 56.075503 124.173442 90.1244725 1.954842736 0.346449 42 93 SH6625 6625 snR48 5' 26.997678 77.984985 52.4913315 1.720087589 0.346209 101 99 SH11453 11453 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4151 4168 40220.62351 29483.89456 34852.25904 4.542230933 0.345642 81 90 SH1343 1343 Ile3 tRNA-intron/exon 96 108 33.352681 98.520922 65.9368015 1.819127876 0.345425 142 43 SH11524 11524 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4506 4525 32.444784 97.140596 64.79269 1.811526011 0.345019 194 79 SH3492 3492 Tyr1 tRNA 1 13 63.367394 132.456646 97.91202 1.99083601 0.344748 116 80 SH6379 6379 snR43 snR43 136 152 33.292193 98.482883 65.887538 1.81880328 0.34474 54 103 SH5323 5323 snR30 snR30 466 480 322.555997 423.049766 372.8028815 2.57147926 0.344611 191 41 SH6955 6955 snR58 3' 28.462432 86.600487 57.5314595 1.759905392 0.344483 112 51 SH14145 14145 MT COB intronic 30.656338 123.951473 30.656338 94.295135 62.4757365 1.795711385 0.344243 68 11 SH21910 21910 copy of SH19563 247.507418 339.584904 293.546161 2.467676405 0.343931 122 26 SH990 990 Gly2 5' flank 30.089367 92.960932 61.5251495 1.789052678 0.343696 49 11 SH17630 17630 YJR094W-A_10_608000_608553_INTRON_3_277 intron 32.962285 129.995682 32.962285 98.033397 65.497841 1.816226985 0.343631 39 46 SH10899 10899 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1381 1398 32.446471 97.221314 64.8338925 1.811802097 0.343506 26 13 SH1397 1397 Leu1 tRNA-intron 56 72 337.653836 440.23177 388.942803 2.58988574 0.343443 114 34 SH16872 16872 YGL187C_7_150529_149708_INTRON_1_342 intron 32.011783 127.550927 32.011783 96.539144 64.2754635 1.808045217 0.343264 36 81 SH21081 21081 YMR292W spliced 234.707724 325.593848 280.150786 2.447391845 0.343019 66 45 SH3194 3194 Ser5 3' flank 58.394472 127.009497 92.7019845 1.967089031 0.342924 167 4 SH11517 11517 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4471 4488 64.392959 133.729355 99.061157 1.995903396 0.342835 205 23 SH10982 10982 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1796 1816 31.01733 94.956717 62.9870235 1.799251086 0.342796 4 28 SH10939 10939 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1581 1596 56.866957 125.332941 91.099949 1.959518134 0.342398 96 104 SH1009 1009 Gly2 tRNA 36 48 257.669164 351.219261 304.4442125 2.483507723 0.342398 143 5 SH16902 16902 YGL226C-A_7_73156_72747_INTRON_22_170 3' exon 29.861314 121.026475 29.861314 92.165161 61.0132375 1.78542407 0.342398 103 32 SH21498 21498 copy of SH2291 866.590655 1002.319619 934.455137 2.970558456 0.342187 138 88 SH16941 16941 YGR027C_7_534779_534126_INTRON_1_312 intron 64.29374 196.967107 64.29374 133.673367 98.9835535 1.995563041 0.342078 62 48 SH6075 6075 snR37 snR37 291 308 453.807902 569.012695 511.4102985 2.708769469 0.341625 194 73 SH18350 18350 YML124C_13_23684_22049_INTRON_26_323 intron 25.584566 94.95573 25.584566 70.371164 47.977865 1.681040918 0.341557 19 57 SH11381 11381 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3791 3808 47314.23538 34105.93877 40710.08708 4.609702031 0.341462 214 89 SH11734 11734 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5556 5571 45520.87591 32971.03687 39245.95639 4.593794917 0.341231 71 36 SH9178 9178 snR7 U5 RNA U5 161 179 71.997391 142.38983 107.1936105 2.030168899 0.341173 87 98 SH8139 8139 snoRNA cluster 3; intergenic 121.136409 318.907164 121.136409 198.770755 159.953582 2.20399397 0.34114 7 23 SH3753 3753 Val4 5' flank - tRNA3 3 87.737617 160.376695 124.057156 2.093621821 0.341114 56 60 SH15835 15835 YDL075W_4_322225_322987_INTRON_58_478 intron 196.840763 479.640343 196.840763 283.79958 240.3201715 2.380790225 0.340792 53 104 SH11439 11439 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4081 4097 133.126495 212.459135 172.792815 2.23752568 0.340628 60 44 SH2373 2373 Phe4 5' flank 28.99288 88.916257 58.9545685 1.770517465 0.340594 177 40 SH2559 2559 Pro2 tRNA-exon/intron 31 45 42.344252 108.948238 75.646245 1.878787375 0.340535 82 21 SH10974 10974 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1756 1769 43794.66948 31884.3226 37839.49604 4.577945344 0.34047 119 12 SH9473 9473 RUF2 RUF2 206 224 28.614055 87.462399 58.038227 1.763714137 0.340419 198 27 SH7446 7446 snR69 3' 28.49183 87.014585 57.7532075 1.761576109 0.340066 105 74 SH5456 5456 snR32 5' 27.86962 83.552257 55.7109385 1.745940475 0.339952 103 85 SH21513 21513 copy of SH2858 27.244723 79.934452 53.5895875 1.729080414 0.33977 116 97 SH1545 1545 Leu3 3' flank 32.081029 96.850532 64.4657805 1.809329245 0.339361 148 92 SH8331 8331 snoRNA cluster4 intergenic/snR53 26.920927 104.036509 26.920927 78.115582 52.5182545 1.720310283 0.339117 158 55 SH228 228 Arg3 5' flank - tRNA 12 5' flank 12 34.9061 100.626072 67.766086 1.831012403 0.338892 36 26 SH2030 2030 Lys3 96 + 3' flank 96 115 27.308226 80.381054 53.84464 1.731142478 0.338788 124 83 SH7333 7333 snR66 3' 28.904767 88.706196 58.8054815 1.76941781 0.338706 112 67 SH384 384 Asn1 1-13 1 13 220.402531 310.607498 265.5050145 2.424072728 0.338418 104 103 SH11940 11940 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6586 6603 33.233304 98.718246 65.975775 1.8193845 0.338356 3 33 SH12401 12401 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.305476 128.597637 32.305476 97.292161 64.7988185 1.811567087 0.337773 71 75 SH18005 18005 YLR287C-A_12_713158_712537_INTRON_4_433 intron 85.179222 241.933176 85.179222 157.753954 121.466588 2.084456832 0.337537 161 44 SH10130 10130 RUF6 RUF6 496 510 28.583632 87.577639 58.0806355 1.76403136 0.337027 37 61 SH6331 6331 snR42 3' 31.815173 96.54397 64.1795715 1.807396813 0.337 180 52 SH9551 9551 RUF3 RUF3 141 157 26.92173 78.297161 52.6094455 1.721063724 0.336955 200 81 SH10562 10562 RUF8 RUF8 736 752 29.984831 93.044798 61.5148145 1.788979719 0.336941 104 51 SH4553 4553 U3b (snR17b) U3b 321 335 30.172084 93.793394 61.982739 1.792270764 0.336756 141 100 SH17276 17276 YHR141C_8_382752_381991_INTRON_5_445 exon/intron 77.01076 224.484916 77.01076 148.474156 112.742458 2.052087499 0.336686 71 37 SH11425 11425 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4011 4026 680.521597 812.999031 746.760314 2.87318123 0.336628 58 20 SH15208 15208 MT COX3 cox3 28.428259 114.438338 28.428259 87.010079 57.719169 1.76132007 0.336534 150 49 SH17800 17800 YKL190W_11_82949_83552_INTRON_53_128 5' exon 28.759993 116.078057 28.759993 88.318064 58.5390285 1.767445511 0.336206 8 59 SH10966 10966 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1716 1736 60.02012 129.279427 94.6497735 1.976119579 0.336065 209 18 SH3375 3375 Thr4 5' flank 29.641445 91.767117 60.704281 1.78321932 0.336009 99 40 SH7822 7822 snoRNA cluster1 intergenic 27.828373 110.589445 27.828373 83.761072 55.7947225 1.746593122 0.334689 10 64 SH224 224 Arg3 5' flank 28.225873 86.14544 57.1856565 1.757287111 0.334429 45 94 SH12110 12110 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7436 7451 325.845856 429.589729 377.7177925 2.577167443 0.334221 93 11 SH12291 12291 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.148128 125.752726 31.148128 95.604598 63.376363 1.801927313 0.3342 100 89 SH8128 8128 snoRNA cluster 3; snR41 36.399546 137.945952 36.399546 102.546406 69.472976 1.841815903 0.334024 160 33 SH16747 16747 YGL076C_7_365994_364333_INTRON_565_1032 intron 30.746317 124.709163 30.746317 94.962846 62.8545815 1.798336939 0.333885 32 22 SH16765 16765 YGL087C_7_346902_346404_INTRON_12_96 3' exon 257.589165 609.661036 257.589165 353.071871 305.330518 2.484770215 0.333641 184 56 SH3259 3259 Thr1 3' flank 26.768441 77.698853 52.233647 1.71795035 0.33327 27 76 SH10424 10424 RUF8 RUF8 46 63 29.503278 91.425969 60.4646235 1.781501353 0.33323 3 20 SH21573 21573 copy of SH5388 30.239277 94.169362 62.2043195 1.793820543 0.33304 153 66 SH1221 1221 Ile1 66-74 + 3' flank 66 28.915543 89.144587 59.030065 1.771073261 0.333023 2 18 SH14460 14460 MT 21S rRNA 21S rRNA3 472.172483 1063.408643 472.172483 592.23616 532.2043215 2.726078397 0.333015 210 5 SH10920 10920 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1486 1505 59.981485 129.451461 94.716473 1.976425518 0.332916 17 84 SH7635 7635 snR189 3' 28.129121 85.716458 56.9227895 1.755286175 0.332734 85 98 SH10935 10935 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1561 1578 214.704948 305.314605 260.0097765 2.414989678 0.332659 208 26 SH21553 21553 copy of SH4566 30.97972 95.43935 63.209535 1.800782595 0.33203 200 98 SH21898 21898 copy of SH19003 27.105852 79.797296 53.451574 1.727960498 0.33168 34 37 SH6736 6736 snR49 3' 28.935503 89.332668 59.1340855 1.771837885 0.331448 179 23 SH4720 4720 snR4 snR4 136 152 35.446161 101.612759 68.52946 1.83587731 0.331255 171 28 SH8746 8746 LSR1 / U2 RNA U2 371 387 68.395551 139.108778 103.7521645 2.015997166 0.331179 37 76 SH16940 16940 YGR027C_7_534779_534126_INTRON_1_312 intron 27.534136 108.864456 27.534136 82.33032 54.932228 1.739827214 0.331173 24 52 SH7042 7042 snR62 snR62 1 23 30.959533 95.450828 63.2051805 1.800752676 0.33115 129 83 SH14914 14914 MT tRNA Tyr tRNA 34.593121 134.250783 34.593121 100.657662 67.6253915 1.830109792 0.330884 27 90 SH8711 8711 LSR1 / U2 RNA U2 196 212 27.307347 81.032798 54.1700725 1.733759417 0.330855 31 86 SH6432 6432 snR45 snR45 6 25 29.984516 93.505767 61.7451415 1.79060279 0.330625 98 20 SH5289 5289 snR30 snR30 296 311 29.859762 93.019247 61.4395045 1.788447705 0.330558 202 10 SH5356 5356 snR30 3' 46.05703 113.789684 79.923357 1.902673717 0.33051 97 84 SH8446 8446 snoRNA cluster 5 snR128 103.347534 281.745728 103.347534 179.398194 141.372864 2.150366056 0.330435 171 86 SH1552 1552 Leu4 5' flank 28.168659 86.184018 57.1763385 1.75721634 0.330115 52 89 SH70 70 Ala2 5' flank - tRNA3 5' flank 3 74.681545 146.380642 110.5310935 2.043484467 0.329807 115 80 SH1775 1775 Leu8 5' flank 28.172642 86.236354 57.204498 1.757430179 0.329794 193 103 SH21246 21246 YPL031C spliced 42.699555 109.961317 76.330436 1.882697743 0.329642 122 89 SH8713 8713 LSR1 / U2 RNA U2 206 222 30.581456 94.918525 62.7499905 1.797613664 0.32938 108 18 SH6130 6130 snR39B 5' - 11 -9 11 29.124077 90.227721 59.675899 1.77579897 0.329206 108 90 SH16553 16553 YER133W_5_432491_433954_INTRON_178_702 intron 33.865788 132.764885 33.865788 99.899097 66.8824425 1.825312125 0.329167 32 11 SH12443 12443 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 79.264738 229.945102 79.264738 151.680364 115.472551 2.06247876 0.32898 110 75 SH2334 2334 Phe3 5' flank - tRNA13 13 123.907597 203.413112 163.6603545 2.213943488 0.328864 160 54 SH1603 1603 Leu4 3' flank 28.522232 87.901472 58.211852 1.765011417 0.328859 13 24 SH17389 17389 YIL069C_9_232366_231550_INTRON_4_412 intron 44.372556 155.304903 44.372556 111.932347 78.1524515 1.892942606 0.328842 105 85 SH5176 5176 snR13 snR13 36 50 115.843291 194.115982 154.9796365 2.190274638 0.328801 115 3 SH8572 8572 snR19 / U1 RNA U1 356 371 29.374583 91.240509 60.307546 1.780371657 0.328776 90 37 SH10859 10859 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1181 1199 28.329074 87.196404 57.762739 1.761647778 0.328177 120 74 SH4792 4792 snR5 snR5 131 150 29.123113 90.304794 59.7139535 1.776075826 0.328064 59 98 SH21345 21345 YPR098C spliced 242.411945 337.303481 289.857713 2.462184861 0.327985 38 102 SH2392 2392 Phe4 tRNA 11 25 519.094206 645.26762 582.180913 2.765057963 0.327779 65 69 SH9258 9258 snR6 / U6 RNA 3' 157.850481 242.140235 199.995358 2.301019916 0.327247 204 92 SH2912 2912 Pro8 tRNA 81 95 32.129435 97.553553 64.841494 1.811853013 0.327246 46 103 SH1279 1279 Ile2 tRNA-intron/exon 91 105 76.023939 148.124531 112.074235 2.049505783 0.327236 159 18 SH5592 5592 snR33 3' 32.246126 97.742586 64.994356 1.812875645 0.327229 50 97 SH15082 15082 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 33.274364 131.580402 33.274364 99.306038 66.290201 1.821449336 0.327087 174 97 SH17841 17841 YKR094C_11_618384_617630_INTRON_9_376 intron 29.798339 121.832344 29.798339 93.034005 61.416172 1.788282744 0.327038 69 23 SH3290 3290 Thr2 tRNA 51 66 39.330574 106.220111 72.7753425 1.861984258 0.327019 184 11 SH2353 2353 Phe3 91 + 3' flank 91 25.994673 73.713868 49.8542705 1.697702366 0.326999 79 74 SH7880 7880 snoRNA cluster1 snR73 27.712116 110.456876 27.712116 83.74476 55.728438 1.74607687 0.32688 96 43 SH549 549 Cys1 tRNA 46 62 66.264976 136.990224 101.6276 2.00701167 0.326814 64 72 SH4093 4093 SRP RNA SRP RNA 356 371 32.371245 97.981924 65.1765845 1.814091598 0.3265 145 22 SH12463 12463 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 115.057398 307.544303 115.057398 193.486905 154.2721515 2.188287536 0.326299 213 21 SH5293 5293 snR30 snR30 316 330 97.369848 172.914471 135.1421595 2.130790854 0.326117 8 91 SH21593 21593 copy of SH6254 28.802005 89.186397 58.994201 1.770809324 0.326087 148 20 SH21354 21354 YPR187W spliced 1636.329536 1787.138705 1711.734121 3.233436308 0.32598 196 70 SH298 298 Arg4 3' flank 26.410786 76.197711 51.3042485 1.71015333 0.325963 75 2 SH5355 5355 snR30 3' 74.121657 146.053559 110.087608 2.041738435 0.32586 5 50 SH2280 2280 Phe2 5' flank - tRNA12 12 54.65167 123.880794 89.266232 1.950687203 0.325833 173 9 SH4942 4942 snR9 snR9 116 133 35.334738 101.753341 68.5440395 1.835969695 0.325823 103 51 SH6146 6146 snR39B snR39B 71 88 28.204102 86.788607 57.4963545 1.75964031 0.325704 66 46 SH19088 19088 YOR293W_15_867094_867848_INTRON_53_489 3' exon 261.80619 620.38815 261.80619 359.58196 310.694075 2.492332971 0.325698 162 97 SH11281 11281 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3291 3309 212.241875 303.862439 258.052157 2.411707494 0.325659 152 82 SH21305 21305 YPL218W spliced 34.155721 100.407938 67.2818295 1.827897792 0.325624 161 79 SH6591 6591 snR47 snR47 61 79 2284.847824 2404.46231 2344.655067 3.370078961 0.325615 111 59 SH1807 1807 Leu8 tRNA 61 77 53.75023 122.880639 88.3154345 1.94603661 0.325409 150 5 SH6856 6856 snR56 5' 29.188699 90.758161 59.97343 1.777958888 0.325305 85 3 SH7476 7476 snR71 5' - 17 -4 17 109.270762 186.901355 148.0860585 2.170514174 0.324811 161 40 SH4782 4782 snR5 snR5 81 98 30.458168 94.95511 62.706639 1.797313524 0.324609 27 101 SH10632 10632 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 46 62 28.574083 88.397972 58.4860275 1.767052124 0.324606 38 90 SH2318 2318 Phe3 5' flank 40.437493 107.569577 74.003535 1.869252466 0.324596 109 93 SH20475 20475 YGL189C spliced 28.177952 86.737419 57.4576855 1.759348128 0.324507 103 72 SH5935 5935 snR36 snR36 131 143 31.782421 97.14045 64.4614355 1.809299973 0.324365 110 23 SH21914 21914 copy of SH19997 159.820206 244.836519 202.3283625 2.306056767 0.324086 29 7 SH8580 8580 snR19 / U1 RNA U1 396 410 2593.20635 2690.972873 2642.089612 3.421947543 0.323935 118 68 SH3604 3604 Val1 tRNA 16 31 75.54227 147.845041 111.6936555 2.048028505 0.323901 91 8 SH20504 20504 YGR027C spliced 28.078791 86.207117 57.142954 1.756962687 0.323749 197 77 SH7866 7866 snoRNA cluster1 intergenic/snR73 37.230623 140.253034 37.230623 104.022411 70.626517 1.848967789 0.323532 45 14 SH1331 1331 Ile3 tRNA-exon/intron 36 52 28.330995 87.534151 57.932573 1.762922818 0.323359 180 51 SH668 668 Gln2 3' flank 177.471185 264.944065 221.207625 2.344800093 0.323205 178 6 SH8503 8503 snR19 / U1 RNA U1 11 27 271.653118 371.233276 321.443197 2.507104239 0.323203 57 49 SH16789 16789 YGL103W_7_310965_311925_INTRON_50_560 intron 29.435624 120.317553 29.435624 91.881929 60.6587765 1.782893646 0.323191 123 51 SH17231 17231 YHR077C_8_255757_252375_INTRON_7_119 intron 27.379942 108.501551 27.379942 82.121609 54.7507755 1.738390275 0.322918 96 86 SH15874 15874 YDL082W_4_308423_309387_INTRON_5_369 5' exon 105.105912 286.387788 105.105912 182.281876 143.693894 2.157438314 0.322635 208 24 SH6129 6129 snR39B 5' - 7 -14 7 29.309021 91.429352 60.3691865 1.780815324 0.322541 197 18 SH9421 9421 RUF2 5' 30.293331 94.790186 62.5417585 1.796170088 0.322449 61 79 SH9076 9076 snR14 / U4 RNA 5' - 12 -4 12 38.573332 105.610627 72.0919795 1.857886951 0.322406 135 102 SH16412 16412 YER056C-A_5_270183_269421_INTRON_38_434 intron 40.834791 147.993292 40.834791 108.158501 74.496646 1.87213672 0.322402 112 73 SH14823 14823 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly 37.779094 141.491629 37.779094 104.712535 71.2458145 1.852759356 0.322336 127 19 SH4342 4342 telomerase RNA telomerase 746 764 28.96959 90.110801 59.5401955 1.774810256 0.322291 50 4 SH4940 4940 snR9 snR9 106 123 34.27121 100.709904 67.490557 1.829243012 0.322171 57 16 SH5455 5455 snR32 5' 29.0523 90.456238 59.754269 1.776368938 0.322007 129 84 SH11412 11412 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3946 3961 915.094406 1065.849082 990.471744 2.995842091 0.3219 50 52 SH19130 19130 YPL075W_16_412249_415357_INTRON_9_759 intron 28.690283 116.733271 28.690283 89.042988 58.8666355 1.769869215 0.321878 212 25 SH12226 12226 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.8879 112.132942 27.8879 85.245042 56.566471 1.752559085 0.321654 32 29 SH8441 8441 snoRNA cluster 5 snR128 125.556206 330.774519 125.556206 206.218313 165.8872595 2.219813033 0.32135 92 39 SH21556 21556 copy of SH4782 30.026793 94.361213 62.194003 1.79374851 0.321288 98 44 SH4605 4605 snR3 5' 28.134193 86.767751 57.450972 1.759297381 0.321196 101 3 SH6096 6096 snR37 3' 30.058572 94.472916 62.265744 1.794249182 0.320974 13 97 SH183 183 Arg2 31-45 31 45 104.424382 181.686486 143.055434 2.155504359 0.320691 208 34 SH963 963 Gly1 66-72 + 3' flank 66 26.222085 75.518272 50.8701785 1.706463262 0.320689 117 25 SH7517 7517 snR79 5' 620.045427 757.182408 688.6139175 2.837975796 0.32048 92 56 SH19439 19439 YPR187W_16_911252_911795_INTRON_21_96 exon/intron 1320.255903 2798.82319 1320.255903 1479.567287 1399.911595 3.146100611 0.320453 181 13 SH21400 21400 Pro8 spliced 43.675847 111.610263 77.643055 1.890102615 0.320359 108 57 SH6888 6888 snR56 snR56 71 88 27.334017 82.077346 54.7056815 1.738032433 0.320236 55 103 SH2571 2571 Pro2 tRNA 91 103 76.245734 148.966826 112.60628 2.051562612 0.32002 10 68 SH12430 12430 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.65453 116.692066 28.65453 89.037536 58.846033 1.769717191 0.319947 86 8 SH2294 2294 Phe2 tRNA 66 80 29.831052 93.708444 61.769748 1.79077583 0.3196 132 100 SH7127 7127 snR63 snR63 141 153 29.436313 92.157505 60.796909 1.7838815 0.319412 129 55 SH3438 3438 Trp1 tRNA 21 35 111.956454 190.634016 151.295235 2.17982525 0.319375 196 59 SH3278 3278 Thr2 5' flank - tRNA8 8 32.858238 99.141471 65.9998545 1.819542978 0.31929 64 84 SH11825 11825 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6011 6024 570.870253 705.002182 637.9362175 2.804777259 0.319115 49 40 SH6003 6003 snR37 5' 35.02965 101.735414 68.382532 1.834945177 0.319102 28 42 SH1755 1755 Leu7 tRNA 71 83 52.19258 121.516466 86.854523 1.93879244 0.319099 164 43 SH7820 7820 snoRNA cluster1 intergenic 27.45368 109.338576 27.45368 82.884896 55.169288 1.741697379 0.319038 111 20 SH8807 8807 LSR1 / U2 RNA U2 676 692 32.681642 98.878477 65.7800595 1.818094262 0.318897 120 58 SH10825 10825 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1011 1030 131.258119 213.074552 172.1663355 2.235948236 0.318807 40 78 SH2357 2357 Phe3 3' flank 27.042752 80.511854 53.777303 1.730599018 0.318538 126 43 SH12323 12323 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.218696 124.091355 30.218696 94.872659 62.5456775 1.796197301 0.31834 63 26 SH8814 8814 LSR1 / U2 RNA U2 711 723 159.008715 244.771515 201.890115 2.305115055 0.318284 153 94 SH13334 13334 MT COX1 COX1-ai5a 30.801123 125.648273 30.801123 95.84715 63.3241365 1.801569276 0.318207 45 92 SH15999 15999 YDL137W_4_216158_217074_INTRON_1_332 intron 172.803253 432.259854 172.803253 260.456601 216.629927 2.335718453 0.318192 81 3 SH12832 12832 MT COX1 COX1ai1 38.795606 143.882045 38.795606 106.086439 72.4410225 1.859984572 0.318059 147 39 SH11979 11979 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6781 6798 191.180456 281.411124 236.29579 2.373455984 0.317901 74 2 SH8886 8886 LSR1 / U2 RNA U2 1071 1090 28.152742 87.195416 57.674079 1.760980668 0.317663 171 71 SH8456 8456 snoRNA cluster 5 snR128 34.11306 133.859941 34.11306 100.746881 67.4299705 1.82885297 0.317633 178 77 SH16854 16854 YGL183C_7_157071_156547_INTRON_4_86 intron/exon 29.69918 122.032909 29.69918 93.333729 61.5164545 1.788991297 0.317569 207 84 SH12412 12412 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.563033 103.348336 26.563033 77.785303 52.174168 1.717455532 0.317343 5 25 SH17278 17278 YHR141C_8_382752_381991_INTRON_5_445 intron 28.373074 115.521074 28.373074 88.148 58.260537 1.765374483 0.316844 212 63 SH12429 12429 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.331518 101.794722 26.331518 76.463204 51.397361 1.710940821 0.316839 94 82 SH4271 4271 telomerase RNA telomerase 391 408 28.397914 88.24723 58.322572 1.765836668 0.316819 124 60 SH10838 10838 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1076 1091 445.261251 568.78629 507.0237705 2.705028321 0.316764 73 83 SH17655 17655 YKL002W_11_437416_438182_INTRON_61_128 5' exon 43.442691 153.997321 43.442691 111.55463 77.4986605 1.889294196 0.316543 50 23 SH15145 15145 MT tRNA Thr1 reverse complement tRNA 29.216302 119.711424 29.216302 91.495122 60.355712 1.780718378 0.316521 182 3 SH21394 21394 Pro2_7 spliced 32.94788 99.436056 66.191968 1.820805294 0.316324 75 54 SH6952 6952 snR58 3' 29.551614 92.850069 61.2008415 1.786757394 0.316167 101 46 SH3701 3701 Val3 5' flank - tRNA3 3 28.421353 88.384525 58.402939 1.766434703 0.316167 100 57 SH3908 3908 RNase MRP 5' 31.35698 96.872989 64.1149845 1.806959542 0.316063 178 15 SH21719 21719 copy of SH11709 94.381755 170.424732 132.4032435 2.121898624 0.315826 171 9 SH10423 10423 RUF8 RUF8 41 58 30.922251 96.177422 63.5498365 1.803114438 0.315657 54 76 SH20114 20114 YDL075W spliced 28.139984 87.300241 57.7201125 1.761327169 0.315626 122 99 SH21419 21419 Ser4 spliced 98.296253 175.048131 136.672192 2.13568016 0.315541 93 79 SH12921 12921 MT COX1 COX1ai2 27.539366 110.243947 27.539366 83.704581 55.6219735 1.745246394 0.3154 40 86 SH21669 21669 copy of SH9619 30.483722 95.46637 62.975046 1.799168493 0.315333 146 79 SH10626 10626 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 16 33 27.300459 82.312478 54.8064685 1.738831819 0.3151 188 54 SH21388 21388 Phe1_5 spliced 79.897803 153.682247 116.790025 2.067405751 0.314225 153 21 SH12293 12293 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 44.834358 157.137351 44.834358 113.302993 79.0686755 1.898004464 0.314169 116 60 SH12398 12398 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.5482 110.417915 27.5482 83.869715 55.7089575 1.745925031 0.314092 73 44 SH8872 8872 LSR1 / U2 RNA U2 1001 1017 294.129162 399.037207 346.5831845 2.539807488 0.313839 43 36 SH17338 17338 YIL018W_9_316766_317930_INTRON_5_404 intron 301.915568 708.866154 301.915568 407.950586 354.933077 2.550146474 0.313787 193 8 SH10302 10302 RUF7 RUF7 121 138 27.63031 84.388276 56.009293 1.748260091 0.31377 174 77 SH12350 12350 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.994005 129.048543 31.994005 98.054538 65.0242715 1.813075495 0.313365 114 3 SH11809 11809 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5931 5949 107.864923 186.521502 147.1932125 2.167887784 0.313235 26 16 SH8790 8790 LSR1 / U2 RNA U2 591 607 237.302073 334.664905 285.983489 2.45634096 0.313173 166 63 SH5933 5933 snR36 snR36 121 136 28.364162 88.378889 58.3715255 1.766201043 0.313004 62 17 SH10995 10995 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1861 1878 46025.82447 33910.99177 39968.40812 4.601716851 0.312979 55 2 SH7620 7620 snR189 snR189 171 183 241.649462 339.635917 290.6426895 2.463359404 0.312908 130 8 SH19404 19404 YPR063C_16_678315_677807_INTRON_42_127 3' exon 130.815533 343.154095 130.815533 213.338562 172.0770475 2.235722946 0.312669 99 92 SH14501 14501 MT 21S rRNA 21S rRNA3 306.545901 719.086831 306.545901 413.54093 360.0434155 2.556354873 0.312596 97 93 SH6768 6768 snR50 snR50 16 32 1685.390782 1851.483025 1768.436904 3.247589569 0.312369 32 12 SH1695 1695 Leu6 tRNA 41 55 42.33659 110.494497 76.4155435 1.883181706 0.312364 65 21 SH8315 8315 snoRNA cluster4 intergenic 105.981795 289.441756 105.981795 184.459961 145.220878 2.162029058 0.311855 80 64 SH8182 8182 snoRNA cluster 3; snR70 45.0503 157.756671 45.0503 113.706371 79.3783355 1.899701988 0.311608 123 45 SH6131 6131 snR39B 5' - 17 -4 17 60.983814 132.0942 96.539007 1.984702827 0.311474 87 91 SH11377 11377 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3771 3784 37251.55013 28183.0593 32717.30471 4.514777519 0.311335 84 93 SH17362 17362 YIL052C_9_257061_256224_INTRON_38_509 intron 117.287043 314.103813 117.287043 197.81677 157.5519065 2.197423663 0.311223 162 2 SH8067 8067 snoRNA cluster 2 snR61 28.774107 117.898003 28.774107 90.123896 59.4490015 1.774144565 0.311199 100 90 SH17617 17617 YJR021C_10_469271_468247_INTRON_317_396 intron/exon 41.777556 150.678801 41.777556 109.901245 75.8394005 1.879894891 0.311128 150 56 SH19181 19181 YPL079W_16_406631_407534_INTRON_12_432 intron 262.942218 626.14853 262.942218 364.206312 313.574265 2.496340413 0.311025 136 68 SH15963 15963 YDL130W_4_229906_230527_INTRON_115_415 intron 105.806798 289.163669 105.806798 184.356871 145.0818345 2.161613038 0.310893 202 40 SH20567 20567 YHR010W spliced 31.317104 97.085614 64.201359 1.807544221 0.310658 182 45 SH3022 3022 Ser2 71-82 + 3' flank 71 27.65 84.776706 56.213353 1.749839491 0.310655 132 31 SH20587 20587 YHR021C spliced 29.562771 93.323241 61.443006 1.788472455 0.310297 28 91 SH65 65 Ala2 5' flank 31.475378 97.370047 64.4227125 1.809039007 0.310195 158 58 SH6930 6930 snR58 snR58 11 31 28.915438 90.757375 59.8364065 1.776965504 0.310165 144 5 SH10028 10028 RUF6 5' - 1 -14 1 28.088944 87.485373 57.7871585 1.76183134 0.310092 14 3 SH1812 1812 Leu8 86-101 + 3' flank 86 29.210979 91.937423 60.574201 1.782287694 0.310081 77 17 SH21907 21907 copy of SH19402 41.751638 109.929342 75.84049 1.87990113 0.310062 199 2 SH11505 11505 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4411 4428 114.264313 194.422846 154.3435795 2.188488568 0.309907 73 5 SH20977 20977 YML056C spliced 45.655449 114.520655 80.088052 1.90356773 0.309867 62 44 SH12329 12329 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.852487 118.38298 28.852487 90.530493 59.69149 1.77591242 0.309844 194 59 SH2914 2914 Pro8 tRNA 91 103 32.5201 99.130015 65.8250575 1.818391247 0.309149 85 100 SH11795 11795 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5861 5879 221.429414 317.521216 269.475315 2.430518988 0.308919 214 60 SH11522 11522 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4496 4514 118.863459 199.941904 159.4026815 2.202495623 0.308764 89 85 SH19231 19231 YPL090C_16_378390_377286_INTRON_7_400 intron 189.354183 469.276518 189.354183 280.922335 235.138259 2.371323298 0.308673 59 65 SH20948 20948 YLR448W spliced 91.04495 167.223197 129.1340735 2.111040851 0.308615 192 101 SH11518 11518 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4476 4494 60.583134 131.849853 96.2164935 1.983249525 0.308353 14 72 SH13546 13546 MT COX1 intronic 29.387838 121.173409 29.387838 92.785571 61.0867045 1.785946696 0.308101 69 98 SH18320 18320 YML085C_13_99400_97941_INTRON_26_141 intron 32.846752 131.560637 32.846752 99.713885 66.2803185 1.821384587 0.308041 26 23 SH2569 2569 Pro2 tRNA 81 95 39.706786 107.639317 73.6730515 1.867308658 0.307916 108 92 SH6512 6512 snR46 snR46 51 65 108.04393 187.32443 147.68418 2.169333976 0.307773 4 10 SH4769 4769 snR5 snR5 16 31 32.923561 99.820512 66.3720365 1.821985143 0.307739 68 49 SH524 524 Cys1 5' flank 52.925132 123.072849 87.9989905 1.94447769 0.307695 194 17 SH13310 13310 MT COX1 COX1-ai5a 28.14512 115.028047 28.14512 87.882927 58.0140235 1.763532987 0.307688 29 68 SH9432 9432 RUF2 RUF2 1 17 35.864514 103.257254 69.560884 1.842365093 0.307637 79 100 SH7706 7706 snoRNA cluster1 intergenic/snR77 164.16308 415.403554 164.16308 252.240474 208.201777 2.318484432 0.307547 121 9 SH18280 18280 YML056C_13_164176_162194_INTRON_461_868 3' exon 34.443707 135.076003 34.443707 101.632296 68.0380015 1.832751548 0.307416 70 50 SH3475 3475 Tyr1 5' flank 33.341894 100.337756 66.839825 1.825035304 0.307366 69 101 SH9151 9151 snR7 U5 RNA U5 26 38 1305.395301 1477.426426 1391.410864 3.14345539 0.307213 15 60 SH14557 14557 MT 21S rRNA 21S rRNA3 38.764129 144.394809 38.764129 106.63068 72.6974045 1.861518906 0.30692 38 76 SH10999 10999 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1881 1898 37217.40039 28242.82368 32730.11204 4.514947492 0.306845 172 90 SH13734 13734 MT COB Exon1 27.812896 112.912433 27.812896 86.099537 56.9562165 1.755541132 0.306786 65 17 SH9073 9073 snR14 / U4 RNA 5' 35.171355 102.509789 68.840572 1.83784447 0.306717 74 35 SH3014 3014 Ser2 tRNA 31 48 30.420643 95.800565 63.110604 1.800102337 0.306675 145 73 SH3836 3836 RNaseP RNaseP 146 158 39.332394 107.293428 73.312911 1.865180464 0.306515 161 57 SH7322 7322 snR66 3' 28.709792 90.217851 59.4638215 1.774252816 0.306266 122 10 SH3162 3162 Ser5 5' flank 30.600432 96.144626 63.372529 1.801901039 0.305822 137 66 SH2504 2504 Pro1 tRNA 11 28 60.372867 131.81147 96.0921685 1.982687994 0.305416 63 48 SH7456 7456 snR69 3' 28.972193 91.324772 60.1484825 1.779224675 0.30538 81 31 SH16684 16684 YGL030W_7_439087_439634_INTRON_4_233 intron 27.918148 113.791327 27.918148 86.873179 57.3956635 1.758879081 0.305284 145 55 SH5594 5594 snR33 3' 33.010655 100.043407 66.527031 1.822998142 0.305284 67 24 SH8453 8453 snoRNA cluster 5 snR128 37.147465 141.022052 37.147465 104.874587 71.011026 1.851325788 0.304978 12 60 SH1348 1348 Ile3 tRNA 121 133 69.84342 142.783061 106.3132405 2.026587356 0.304628 125 65 SH8236 8236 snoRNA cluster 3; 3' 28.770801 118.348728 28.770801 90.577927 59.674364 1.775787799 0.304609 66 51 SH18859 18859 YNR053C_14_723108_721117_INTRON_811_1341 intron 29.067341 119.828624 29.067341 91.761283 60.414312 1.781139834 0.304584 169 8 SH8396 8396 snoRNA cluster 5 snR190 339.326053 791.635895 339.326053 453.309842 396.3179475 2.59804374 0.304552 92 38 SH758 758 Gln4 61-72 + 3' flank 61 42.310765 110.916472 76.6136185 1.884305975 0.30424 69 43 SH21727 21727 copy of SH11922 40.999026 109.355179 75.1771025 1.876085583 0.304137 15 8 SH3709 3709 Val3 tRNA 26 40 38.387621 106.347904 72.3677625 1.859545145 0.304127 114 33 SH6088 6088 snR37 snR37 356 372 43.483088 112.301957 77.8925225 1.891495768 0.304108 14 19 SH3635 3635 Val2 5' flank 29.685109 94.270132 61.9776205 1.792234898 0.304083 18 76 SH10884 10884 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1306 1321 46842.08049 34641.08735 40741.58392 4.610037909 0.30402 144 42 SH6991 6991 snR60 snR60 36 53 32.804523 99.857984 66.3312535 1.821718204 0.304003 89 7 SH8415 8415 snoRNA cluster 5 snR190 33.982583 134.245428 33.982583 101.262845 67.622714 1.830092597 0.303936 15 63 SH5754 5754 snR35 5' 28.537952 89.701739 59.1198455 1.77173329 0.303908 175 73 SH1647 1647 Leu5 101-115 + 3' flank 101 44.019433 112.955751 78.487592 1.894801005 0.303578 139 48 SH8689 8689 LSR1 / U2 RNA U2 86 107 28.274973 88.702825 58.488899 1.767073446 0.303267 102 75 SH9399 9399 RUF1 3' 27.929317 87.122154 57.5257355 1.75986218 0.303259 55 6 SH11636 11636 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5066 5083 312.757657 423.164762 367.9612095 2.565802038 0.303191 14 52 SH8017 8017 snoRNA cluster 2 snR55 31.331853 127.844744 31.331853 97.512891 64.422372 1.809036711 0.302857 164 37 SH16503 16503 YER117W_5_396765_397649_INTRON_43_513 intron 46.838831 162.165595 46.838831 116.326764 81.5827975 1.911598593 0.302671 127 60 SH8676 8676 LSR1 / U2 RNA U2 21 38 35.248065 102.821806 69.0349355 1.839068923 0.302211 99 35 SH8845 8845 LSR1 / U2 RNA U2 866 883 29.794687 94.858501 62.326594 1.794673394 0.302088 43 28 SH2300 2300 Phe2 3' flank 29.907164 95.173589 62.5403765 1.796160491 0.301996 184 96 SH451 451 Asp1 3' flank 28.688947 90.443729 59.566338 1.775000902 0.301909 39 102 SH11778 11778 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5776 5793 299.876484 408.729702 354.303093 2.549374944 0.301851 119 102 SH2799 2799 Pro6 tRNA 86 100 34.261857 101.728315 67.995086 1.832477527 0.301138 58 96 SH4926 4926 snR9 snR9 36 52 28.037676 87.909786 57.973731 1.763231251 0.301137 116 93 SH9309 9309 RUF1 RUF1 121 137 27.190525 82.890582 55.0405535 1.740682793 0.300569 27 60 SH10564 10564 RUF8 RUF8 746 761 30.604073 96.426657 63.515365 1.802878798 0.300423 190 5 SH19436 19436 YPR132W_16_794960_795762_INTRON_66_430 3' exon 33.400543 133.154099 33.400543 100.753556 67.0770495 1.826573951 0.300249 15 31 SH20241 20241 YDR367W spliced 45.37258 114.751422 80.062001 1.90342644 0.300191 118 48 SH4209 4209 telomerase RNA telomerase 81 97 27.328187 83.751072 55.5396295 1.744602978 0.300151 44 32 SH6630 6630 snR48 5' 31.771309 98.379993 65.075651 1.813418521 0.300127 97 71 SH12390 12390 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.323674 135.179283 34.323674 101.855609 68.0896415 1.833081048 0.300024 65 5 SH19332 19332 YPL218W_16_138697_139408_INTRON_29_167 3' exon 28.383966 116.75042 28.383966 89.366454 58.87521 1.769932469 0.299965 183 99 SH11227 11227 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3021 3041 28.74517 90.820502 59.782836 1.776576513 0.299765 196 71 SH10265 10265 RUF7 5' 359.322391 477.686705 418.504548 2.621700182 0.299715 142 58 SH17910 17910 YLR061W_12_263195_263949_INTRON_13_401 intron 26.897246 107.122407 26.897246 81.225161 54.0612035 1.73288571 0.299632 116 39 SH14900 14900 MT tRNA Ile tRNA 40.789277 149.142012 40.789277 109.352735 75.071006 1.875472236 0.299576 202 13 SH7125 7125 snR63 snR63 131 147 32.47799 99.567693 66.0228415 1.819694212 0.299551 107 59 SH4870 4870 snR8 snR8 131 147 29.180511 92.578181 60.879346 1.784469978 0.299548 188 36 SH8566 8566 snR19 / U1 RNA U1 326 345 26.488588 78.819341 52.6539645 1.721431076 0.299305 208 13 SH11314 11314 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3456 3471 24273.06728 19485.4992 21879.28324 4.34003309 0.299278 143 30 SH5991 5991 snR36 3' 40.754437 109.328789 75.041613 1.875302161 0.299244 167 69 SH2335 2335 Phe3 tRNA 1 15 447.772081 578.092212 512.9321465 2.710059918 0.299218 206 20 SH1594 1594 Leu4 3' flank 330.280996 444.47279 387.376893 2.588133712 0.29918 21 84 SH15427 15427 YBL072C_2_89435_88518_INTRON_1_308 intron 28.643902 118.105849 28.643902 90.461947 59.5529245 1.774903093 0.299121 99 9 SH4245 4245 telomerase RNA telomerase 261 277 35.10305 102.820408 68.961729 1.838608142 0.298871 36 79 SH1061 1061 Gly3 tRNA 41 53 119.475504 201.827307 160.6514055 2.205884529 0.298825 81 104 SH6445 6445 snR45 snR45 71 87 28.376283 89.419209 58.897746 1.770098675 0.298777 157 98 SH18098 18098 YLR367W_12_855877_857316_INTRON_698_1180 intron 39.471859 146.334549 39.471859 107.86269 73.6672745 1.867274602 0.298683 100 4 SH14686 14686 MT 21S rRNA 21S rRNA4 33.189472 132.769781 33.189472 100.580309 66.8848905 1.82532802 0.298628 102 93 SH1113 1113 Gly4 tRNA 41 53 2976.28831 3088.459483 3032.373897 3.481782749 0.298184 10 97 SH16792 16792 YGL103W_7_310965_311925_INTRON_50_560 intron 26.540368 104.77639 26.540368 79.236022 52.888195 1.723358745 0.298033 97 3 SH4616 4616 snR3 5' - 15 15 28.806854 91.198093 60.0024735 1.778169154 0.29793 210 36 SH5168 5168 snR13 5' - 12 -4 12 35.008461 102.76219 68.8853255 1.838126715 0.297838 81 41 SH20884 20884 YLR211C spliced 27.610165 85.662039 56.636102 1.753093355 0.297774 137 102 SH11490 11490 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4336 4353 39187.31474 29731.70862 34459.51168 4.537309119 0.297646 51 40 SH14482 14482 MT 21S rRNA 21S rRNA3 38.762863 144.879052 38.762863 107.116189 72.939526 1.862962937 0.29761 16 95 SH21597 21597 copy of SH6473 29.217128 92.877273 61.0472005 1.785665753 0.297457 195 69 SH19207 19207 YPL081W_16_404945_406039_INTRON_8_508 intron 30.650081 126.312529 30.650081 96.662448 63.6562645 1.80384115 0.297327 131 96 SH10864 10864 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1206 1223 103.957591 183.618966 143.7882785 2.157723484 0.297266 202 41 SH19900 19900 snR17B spliced 29.07858 92.339814 60.709197 1.783254489 0.297197 104 94 SH1864 1864 Leu9 tRNA 61 77 47.199858 117.073953 82.1369055 1.914538337 0.297156 69 39 SH8397 8397 snoRNA cluster 5 snR190 30.854443 126.871305 30.854443 97.016862 63.9356525 1.805743102 0.297087 108 47 SH5177 5177 snR13 snR13 41 55 29.879103 95.377397 62.62825 1.796770277 0.297026 45 81 SH20333 20333 YER074W spliced 27.876505 87.382344 57.6294245 1.760644283 0.296736 174 62 SH16647 16647 YFR031C-A_6_221405_220494_INTRON_5_151 intron 97.509132 272.529346 97.509132 176.020214 136.764673 2.135973931 0.296706 69 93 SH4749 4749 snR5 5' 2607.722463 2752.674592 2680.198528 3.428166964 0.296651 91 57 SH4417 4417 telomerase RNA telomerase 1121 1137 30.106946 95.787495 62.9472205 1.798976558 0.296551 142 104 SH3762 3762 Val4 tRNA 36 50 109.250809 189.977536 149.6141725 2.174972735 0.296503 122 4 SH2448 2448 Phe5 tRNA 11 25 482.969798 618.453111 550.7114545 2.74092411 0.29644 23 4 SH18268 18268 YML056C_13_164176_162194_INTRON_461_868 intron 27.648111 112.672613 27.648111 86.024502 56.8363065 1.754625848 0.296282 31 51 SH9134 9134 snR7 U5 RNA 5' 28.74018 91.052361 59.8962705 1.777399781 0.296236 98 10 SH20171 20171 YDL137W spliced 114.912577 196.757472 155.8350245 2.192665074 0.296234 202 60 SH14224 14224 MT ATP9 ATP9 26.505334 104.701039 26.505334 79.195705 52.8505195 1.723049261 0.295971 65 66 SH2566 2566 Pro2 tRNA-intron/exon 66 78 176.427112 268.172832 222.299972 2.346939408 0.295968 30 32 SH4236 4236 telomerase RNA telomerase 216 234 30.217121 96.003958 63.1105395 1.800101893 0.295957 16 54 SH1444 1444 Leu2 5' flank - tRNA9 9 30.857198 97.089643 63.9734205 1.805999572 0.295764 33 30 SH11268 11268 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3226 3243 139.782405 225.917441 182.849923 2.262094782 0.295516 68 5 SH12388 12388 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 49.072854 167.421495 49.072854 119.348641 84.2107475 1.925367522 0.295427 157 17 SH4331 4331 telomerase RNA telomerase 691 705 240.298585 341.983597 291.141091 2.464103505 0.294681 8 48 SH12292 12292 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.189872 125.213816 30.189872 96.023944 63.106908 1.800076902 0.294661 170 84 SH7961 7961 snoRNA cluster 2 5' 28.399722 117.202845 28.399722 89.803123 59.1014225 1.771597934 0.294647 36 54 SH11710 11710 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5436 5449 13173.23502 11417.68947 12295.46224 4.08974486 0.294551 159 20 SH4232 4232 telomerase RNA telomerase 196 210 34.3367 102.152436 68.244568 1.834068089 0.294316 211 76 SH6473 6473 snR45 3' 27.970853 88.123054 58.0469535 1.763779431 0.294205 72 25 SH17739 17739 YKL156W_11_158616_159214_INTRON_4_353 intron 32.581759 131.602769 32.581759 100.02101 66.3013845 1.821522597 0.294188 116 24 SH19698 19698 Negative Control 89.100698 166.309186 127.704942 2.106207704 0.294163 186 64 SH11919 11919 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6481 6501 72.643757 146.881181 109.762469 2.040453868 0.294117 186 62 SH2965 2965 Ser1 tRNA 56 68 36.436894 104.597721 70.5173075 1.848295722 0.294115 106 3 SH11821 11821 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5991 6008 37.161544 105.458058 71.309801 1.853149224 0.293961 163 52 SH12317 12317 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 181.378076 454.595214 181.378076 274.217138 227.797607 2.357549158 0.293955 123 85 SH9041 9041 snR17a / U3a 3' 28.502783 90.265476 59.3841295 1.773670395 0.293937 18 11 SH7168 7168 snR64 5' 30.123357 95.95119 63.0372735 1.799597421 0.29388 59 53 SH4274 4274 telomerase RNA telomerase 406 420 28.687215 91.01701 59.8521125 1.777079484 0.293759 133 59 SH1710 1710 Leu6 3' flank 33.523205 101.222792 67.3729985 1.828485876 0.293633 48 89 SH10232 10232 RUF6 RUF6 1006 1023 26.467083 79.160767 52.813925 1.722748444 0.293606 81 95 SH4995 4995 snR10 snR10 6 23 34.918416 102.867953 68.8931845 1.83817626 0.293606 90 67 SH7462 7462 snR71 5' 31.35253 98.027337 64.6899335 1.810836705 0.293605 5 48 SH21622 21622 copy of SH7517 595.193084 743.498032 669.345558 2.825650386 0.29345 201 27 SH3566 3566 Tyr2 3' flank 37.14247 105.462191 71.3023305 1.853103725 0.293448 24 56 SH16197 16197 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 26.302986 103.493525 26.302986 78.190539 52.2467625 1.718059384 0.293394 214 40 SH8068 8068 snoRNA cluster 2 snR61 28.646936 118.52878 28.646936 90.881844 59.76439 1.776442491 0.29339 15 37 SH11653 11653 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5151 5168 105.343911 185.692153 145.518032 2.162916813 0.293368 146 10 SH4112 4112 SRP RNA SRP RNA 451 465 43.573166 113.016231 78.2946985 1.893732356 0.293365 51 71 SH10385 10385 RUF7 3' 270.481868 377.012221 323.7470445 2.510205812 0.293206 162 47 SH10701 10701 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 391 408 28.423535 90.003221 59.213378 1.772419837 0.29316 8 65 SH12744 12744 MT COX1 COX1ai1 96.187804 269.999846 96.187804 174.812042 135.499923 2.131939048 0.293141 61 18 SH12148 12148 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7626 7639 1045.456493 1222.597704 1134.027099 3.054623433 0.293102 23 57 SH12173 12173 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7751 7771 28.183058 89.052125 58.6175915 1.76802797 0.293013 29 93 SH11167 11167 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2721 2739 31.220619 97.838618 64.5296185 1.809759098 0.293012 124 96 SH10795 10795 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 861 878 26.44466 79.076913 52.7607865 1.722311261 0.292984 44 2 SH8732 8732 LSR1 / U2 RNA U2 301 318 27.753742 86.965066 57.359404 1.75860463 0.292969 7 67 SH4541 4541 U3b (snR17b) U3b 261 278 46.458361 116.480236 81.4692985 1.910993977 0.292573 153 12 SH11206 11206 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2916 2936 37.412193 105.8337 71.6229465 1.855052184 0.292356 156 79 SH4272 4272 telomerase RNA telomerase 396 413 27.235527 83.888784 55.5621555 1.744779086 0.29206 157 75 SH17020 17020 YGR148C_7_788173_787307_INTRON_1_392 intron 37.275037 141.965321 37.275037 105.690284 71.4826605 1.854200708 0.292034 126 6 SH5033 5033 snR10 snR10 196 210 34.621724 102.601696 68.61171 1.836398243 0.291994 106 66 SH6884 6884 snR56 snR56 51 70 28.426786 90.108461 59.2676235 1.772817513 0.291855 140 92 SH20317 20317 YER044C-A spliced 26.734158 80.905719 53.8199385 1.730943197 0.291853 120 67 SH19393 19393 YPR043W_16_654161_654842_INTRON_3_405 intron/exon 31.481843 128.822901 31.481843 98.341058 64.9114505 1.812321314 0.291707 207 27 SH8894 8894 LSR1 / U2 RNA U2 1111 1127 29.430154 94.157924 61.794039 1.790946583 0.291706 153 52 SH10867 10867 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1221 1237 187.469296 281.77174 234.620518 2.370365989 0.291185 169 91 SH21301 21301 YPL218W spliced 27.565153 85.979839 56.772496 1.754137988 0.291047 24 4 SH848 848 Glu2 tRNA 6 23 13981.32985 12060.71589 13021.02287 4.114645102 0.29079 41 23 SH7631 7631 snR189 3' 27.449737 85.300796 56.3752665 1.751088608 0.290759 114 77 SH9168 9168 snR7 U5 RNA U5 111 123 35.400072 103.57 69.485036 1.841891287 0.290732 71 25 SH11718 11718 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5476 5492 3202.519747 3309.702579 3256.111163 3.512699223 0.290618 171 36 SH15931 15931 YDL108W_4_267697_268698_INTRON_29_109 3' exon 30.224048 125.519799 30.224048 96.295751 63.2598995 1.801128498 0.290469 155 104 SH242 242 Arg3 66-72 + 3' flank 66 3' flank 29.074756 92.817097 60.9459265 1.784944684 0.290414 151 89 SH9941 9941 RUF5-1 RUF5-1 511 527 27.706154 86.917013 57.3115835 1.758242408 0.290229 197 66 SH11263 11263 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S/ITS2 3201 3217 27.663071 86.660543 57.161807 1.757105949 0.290136 194 10 SH11748 11748 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5626 5641 35.303378 103.489525 69.3964515 1.841337264 0.290104 111 67 SH547 547 Cys1 tRNA 36 52 33.366063 101.213153 67.289608 1.827947998 0.289991 119 39 SH7066 7066 snR62 3' 46.192028 116.331463 81.2617455 1.909886147 0.289793 194 3 SH3428 3428 Trp1 5' flank 26.580732 80.180971 53.3808515 1.727385497 0.289627 131 6 SH19048 19048 YOR234C_15_779404_778554_INTRON_20_546 intron 468.010883 1071.475717 468.010883 604.464834 536.2378585 2.729357472 0.28958 99 97 SH8452 8452 snoRNA cluster 5 snR128 27.022181 108.845762 27.022181 82.823581 54.922881 1.73975331 0.289491 37 96 SH7260 7260 snR65 snR65 76 95 25.988523 76.628009 51.308266 1.710187338 0.289482 130 36 SH9007 9007 snR17a / U3a U3a 321 338 36.88114 105.361208 71.121174 1.851998917 0.28946 73 68 SH8299 8299 snoRNA cluster4 intergenic 25.770009 100.116089 25.770009 75.34608 50.5580445 1.703790268 0.289316 205 50 SH18556 18556 YMR292W_13_854795_855293_INTRON_23_104 5' exon 30.889833 127.369541 30.889833 97.479708 64.1847705 1.807431993 0.289269 124 66 SH3599 3599 Val1 5' flank - tRNA8 8 29.327209 93.929257 61.628233 1.789779716 0.28916 73 63 SH8873 8873 LSR1 / U2 RNA U2 1006 1022 247.745082 351.751702 299.748392 2.476756862 0.289033 187 2 SH2125 2125 Met1 tRNA 11 25 255.601777 360.841598 308.2216875 2.488863194 0.289027 212 53 SH1577 1577 Leu4 tRNA-intron/exon 56 73 40.35326 109.424727 74.8889935 1.874417994 0.288618 151 37 SH20332 20332 YER074W spliced 27.496386 85.77572 56.636053 1.753092979 0.288591 13 83 SH16918 16918 YGL251C_7_31636_27921_INTRON_59_210 intron 26.188824 103.100167 26.188824 77.911343 52.0500835 1.716421431 0.28842 84 28 SH3627 3627 Val1 3' flank 54.381015 126.029937 90.205476 1.955232903 0.288155 209 66 SH8443 8443 snoRNA cluster 5 snR128 30.09528 125.291225 30.09528 96.195945 63.1456125 1.80034318 0.288147 33 44 SH19896 19896 snR17A spliced 63.179597 136.286633 99.733115 1.998839384 0.288099 89 36 SH1544 1544 Leu3 3' flank 26.41923 79.350273 52.8847515 1.723330468 0.287829 200 99 SH1477 1477 Leu2 3' flank 48.669603 119.33409 84.0018465 1.924288833 0.287829 40 76 SH7411 7411 snR69 5' 27.074254 83.290901 55.1825775 1.741801982 0.287685 129 36 SH7364 7364 snR68 snR68 41 53 626.020978 780.111479 703.0662285 2.846996237 0.287539 53 66 SH10269 10269 RUF7 5' 302.599687 415.654305 359.126996 2.555248053 0.287507 15 99 SH19559 19559 CBP1 2.2 27.235612 84.28917 55.762391 1.746341387 0.287425 205 31 SH2616 2616 Pro3 tRNA-exon/intron 31 45 35.078619 103.362572 69.2205955 1.840235331 0.287425 81 40 SH10796 10796 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 866 886 25.67667 74.949803 50.3132365 1.701682255 0.287355 156 34 SH3135 3135 Ser4 tRNA 81 96 31.160654 98.038177 64.5994155 1.810228588 0.287248 203 33 SH6880 6880 snR56 snR56 31 48 28.814014 91.998639 60.4063265 1.781082426 0.287191 176 74 SH9163 9163 snR7 U5 RNA U5 86 102 26.865759 82.080993 54.473376 1.736184292 0.287177 36 27 SH11270 11270 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3236 3253 44.369072 114.311451 79.3402615 1.899493628 0.287156 196 19 SH18901 18901 YOL120C_15_94401_93394_INTRON_113_559 intron 26.990897 108.831317 26.990897 82.84042 54.9156585 1.739696196 0.287079 128 14 SH20176 20176 YDL189W spliced 274.974808 383.720987 329.3478975 2.517654895 0.286994 145 98 SH7145 7145 snR63 snR63 231 248 39.80536 108.865783 74.3355715 1.871196685 0.286854 55 69 SH5332 5332 snR30 snR30 511 527 26.894437 82.280536 54.5874865 1.737093098 0.286849 51 73 SH17424 17424 YIL111W_9_155219_155762_INTRON_2_89 3' exon 26.615496 106.240299 26.615496 80.624803 53.6201495 1.729328021 0.286743 55 101 SH4767 4767 snR5 snR5 6 23 34.283664 102.475189 68.3794265 1.834925454 0.286528 176 10 SH6583 6583 snR47 snR47 21 36 48.385671 119.094005 83.739838 1.922932116 0.286377 191 18 SH21034 21034 YMR125W spliced 167.950378 259.94764 213.949009 2.330310279 0.28604 32 45 SH8163 8163 snoRNA cluster 3; snR70 30.471811 126.423352 30.471811 96.951541 63.711676 1.80421903 0.285859 6 53 SH6928 6928 snR58 snR58 1 21 45.169821 115.353299 80.26156 1.904507597 0.28579 190 103 SH4146 4146 SRP RNA SRP RNA 621 633 4173.403128 4187.555681 4180.479405 3.621226088 0.285755 28 83 SH11140 11140 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2586 2599 136.702263 223.666474 180.1843685 2.255717112 0.285696 86 13 SH5241 5241 snR30 snR30 56 71 51.808319 123.184536 87.4964275 1.941990321 0.285689 142 74 SH18108 18108 YLR367W_12_855877_857316_INTRON_698_1180 intron 26.665039 106.71054 26.665039 81.045501 53.85527 1.731228208 0.285224 71 63 SH19142 19142 YPL075W_16_412249_415357_INTRON_9_759 intron 45.064888 159.335793 45.064888 115.270905 80.1678965 1.904000488 0.285053 77 93 SH8334 8334 snoRNA cluster4 snR53 54.654943 180.228049 54.654943 126.573106 90.6140245 1.957195419 0.284854 117 100 SH18483 18483 YMR194W_13_651144_651909_INTRON_17_479 5' exon 1145.47682 2478.189307 1145.47682 1333.712487 1239.594654 3.093279694 0.284808 95 24 SH18624 18624 YNL096C_14_444312_443395_INTRON_145_489 intron 50.023386 170.165502 50.023386 121.142116 85.582751 1.932386242 0.284768 115 65 SH7419 7419 snR69 5' - 15 -4 15 45.389495 115.677606 80.5335505 1.905976846 0.284738 32 40 SH10836 10836 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1066 1083 51.478519 122.884668 87.1815935 1.940424803 0.284344 93 10 SH3797 3797 RNaseP 5' flank 30.214858 96.594672 63.404765 1.802121897 0.284325 212 38 SH3056 3056 Ser3 5' flank 28.453528 90.75496 59.604244 1.775277184 0.284258 37 15 SH1681 1681 Leu6 5' flank 28.210854 89.78464 58.997747 1.770835427 0.28416 213 73 SH10488 10488 RUF8 RUF8 366 382 106.137829 187.644894 146.8913615 2.166996256 0.284106 101 55 SH8168 8168 snoRNA cluster 3; snR70 35.704537 138.96296 35.704537 104.258423 69.98148 1.844983123 0.284027 95 36 SH13708 13708 MT tRNAGlu (and 5' processing site for COB) tRNA 63.667031 199.811004 63.667031 137.143973 100.405502 2.001757512 0.283994 196 56 SH6718 6718 snR49 snR49 116 135 26.247676 78.632331 52.4400035 1.719662712 0.283946 127 21 SH17688 17688 YKL006W_11_431544_432358_INTRON_130_527 intron 26.928191 108.659245 26.928191 82.731054 54.8296225 1.739015256 0.283923 189 9 SH20175 20175 YDL189W spliced 82.301059 159.172926 120.7369925 2.081840354 0.283854 25 68 SH15474 15474 YBL091C-A_2_46858_46559_INTRON_35_122 exon/intron 34.201719 135.71336 34.201719 102.511641 68.35668 1.834780961 0.283837 5 100 SH3407 3407 Thr4 3' flank 26.376661 79.437284 52.9069725 1.723512911 0.28367 210 55 SH21401 21401 Pro8 spliced 28.322201 90.267863 59.295032 1.773018308 0.283665 35 29 SH2388 2388 Phe4 5' flank - tRNA8 8 33.649659 101.865674 67.7576665 1.830958441 0.283615 38 91 SH7561 7561 snR79 3' 32.144089 99.868677 66.006383 1.819585935 0.283516 129 75 SH4377 4377 telomerase RNA telomerase 921 937 29.397955 94.640662 62.0193085 1.79252692 0.283425 198 76 SH3228 3228 Thr1 5' flank - tRNA12 12 86.906775 164.71379 125.8102825 2.099716138 0.283319 208 66 SH11103 11103 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2401 2419 73.491067 148.771945 111.131506 2.0458372 0.283195 171 88 SH18856 18856 YNR053C_14_723108_721117_INTRON_811_1341 intron 27.956797 115.794176 27.956797 88.837379 58.397088 1.766391191 0.283106 41 2 SH8171 8171 snoRNA cluster 3; snR70 27.368841 111.846748 27.368841 85.477907 56.423374 1.751459052 0.283098 14 78 SH16133 16133 YDR064W_4_579453_580447_INTRON_22_560 intron/exon 68.481634 210.358008 68.481634 142.876374 105.679004 2.023988712 0.283036 134 103 SH6495 6495 snR46 5' 27.577515 86.775797 57.176656 1.757218752 0.282922 63 79 SH656 656 Gln2 66-72 + 3' flank 66 3' flank 23.824087 65.178108 44.5010975 1.648370722 0.282916 111 74 SH5728 5728 snR34 3' 91.213324 169.889044 130.551184 2.115780815 0.282731 36 93 SH3693 3693 Val3 5' flank 26.326702 79.223309 52.7750055 1.722428287 0.28259 109 47 SH1466 1466 Leu2 101-114 + 3' flank 101 31.637042 99.086708 65.361875 1.815324502 0.282401 212 95 SH21385 21385 Phe1_5 spliced 376.293581 502.718784 439.5061825 2.642964989 0.282334 65 14 SH18593 18593 YNL069C_14_494998_493953_INTRON_29_477 5' exon 197.440087 491.376361 197.440087 294.936274 246.1881805 2.391267199 0.282293 165 25 SH8602 8602 snR19 / U1 RNA U1 506 525 32.521496 100.564419 66.5429575 1.823102099 0.282127 166 85 SH19815 19815 Negative Control 71.70003 146.726187 109.2131085 2.038274768 0.282106 34 72 SH2185 2185 Met2 tRNA 56 68 94.580118 173.998884 134.289501 2.12804206 0.28203 125 57 SH8370 8370 snoRNA cluster 5 5' 32.914314 132.972421 32.914314 101.058107 66.9862105 1.82598541 0.282024 188 62 SH7772 7772 snoRNA cluster1 snR76/intergenic 57.513826 186.626046 57.513826 130.11222 93.813023 1.972263131 0.282015 53 59 SH18494 18494 YMR194W_13_651144_651909_INTRON_17_479 intron 29.047589 121.370602 29.047589 93.323013 61.185301 1.786647101 0.28198 163 79 SH11459 11459 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4181 4196 2439.011961 2620.355404 2529.683683 3.403066219 0.281958 74 102 SH14453 14453 MT 21S rRNA 21S rRNA3 680.167112 1521.305059 680.167112 842.137947 761.1525295 2.881471695 0.281833 190 8 SH4508 4508 U3b (snR17b) U3b 96 113 33.240214 101.493087 67.3666505 1.828444955 0.281191 141 93 SH1821 1821 Leu8 3' flank 26.854201 82.517841 54.686021 1.737876325 0.281181 187 19 SH2470 2470 Phe5 3' flank 27.806174 88.367715 58.0869445 1.764078532 0.280979 172 54 SH2860 2860 Pro7 3' flank 26.673975 81.471864 54.0729195 1.732979819 0.280749 193 9 SH11912 11912 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6446 6467 62.170475 135.655097 98.912786 1.995252434 0.280705 50 75 SH4697 4697 snR4 snR4 21 39 38.795715 108.049041 73.422378 1.865828446 0.280606 115 11 SH11124 11124 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2506 2519 71.878344 147.070282 109.474313 2.039312228 0.28049 196 50 SH17354 17354 YIL018W_9_316766_317930_INTRON_5_404 3' exon 30.814289 127.624699 30.814289 97.81041 64.3123495 1.808294376 0.280436 45 17 SH11355 11355 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3661 3674 110.953406 193.842383 152.3978945 2.182978967 0.280296 27 89 SH21653 21653 copy of SH8773 29.537141 95.44538 62.4912605 1.795819285 0.280242 176 6 SH5421 5421 snR31 snR31 171 187 31.961024 99.739107 65.8500655 1.818556211 0.280242 113 19 SH4556 4556 U3b (snR17b) U3b 336 355 26.802711 82.290241 54.546476 1.736766698 0.280206 134 19 SH4277 4277 telomerase RNA telomerase 421 435 54.837813 127.103763 90.970788 1.958901957 0.280131 155 23 SH11376 11376 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3766 3782 34816.38521 27100.99095 30958.68808 4.490782548 0.280122 154 76 SH4873 4873 snR8 snR8 146 160 39.791475 109.216632 74.5040535 1.872179902 0.279986 133 25 SH5314 5314 snR30 snR30 421 438 26.129006 78.24799 52.188498 1.717574798 0.279886 198 91 SH8871 8871 LSR1 / U2 RNA U2 996 1012 54.107952 126.260708 90.18433 1.955131083 0.279747 202 16 SH135 135 Arg1 51-65 51 65 55.665648 128.126569 91.8961085 1.963297121 0.279467 25 91 SH12100 12100 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7386 7403 626.191368 784.405064 705.298216 2.848372785 0.279466 202 28 SH8328 8328 snoRNA cluster4 intergenic 28.391631 118.244264 28.391631 90.852633 59.622132 1.775407502 0.279379 155 42 SH21087 21087 YMR292W spliced 29.261654 94.395552 61.828603 1.791189434 0.279244 113 35 SH9970 9970 RUF5-1 RUF5-1 656 672 288.84039 401.770835 345.3056125 2.538203637 0.279191 93 23 SH4072 4072 SRP RNA SRP RNA 251 267 77.936098 154.357532 116.146815 2.065007305 0.279146 82 92 SH8608 8608 snR19 / U1 RNA U1 536 552 94.66209 174.387673 134.5248815 2.128802618 0.279127 190 97 SH4561 4561 U3b (snR17b) U3b 361 378 27.763045 88.278738 58.0208915 1.763584398 0.278995 203 74 SH20470 20470 YGL187C spliced 88.708959 167.289317 127.999138 2.107207045 0.278851 182 64 SH7985 7985 snoRNA cluster 2 snR57 32.027752 130.957274 32.027752 99.929522 65.978637 1.81940334 0.278737 21 20 SH3591 3591 Val1 5' flank 26.492424 80.590752 53.541588 1.728691248 0.2783 109 43 SH2281 2281 Phe2 tRNA 1 15 423.421942 558.317052 490.869497 2.690966046 0.278088 47 72 SH3877 3877 RNaseP RNaseP 351 366 45.75698 116.515546 81.136263 1.909215001 0.277977 198 23 SH15941 15941 YDL125C_4_239605_239018_INTRON_98_208 5' exon 32.466264 132.164819 32.466264 100.698555 66.5824095 1.823359507 0.277913 118 55 SH11292 11292 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3346 3364 29.33388 94.789464 62.061672 1.792823472 0.277907 74 37 SH11481 11481 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4291 4304 707.970614 874.595966 791.28329 2.898331995 0.277846 78 46 SH493 493 Asp2 tRNA 26 38 159.354708 251.245768 205.300238 2.312389453 0.277641 113 44 SH13027 13027 MT COX1 COX1ai2 42.807548 154.814715 42.807548 113.007167 77.9073575 1.891578474 0.277607 109 87 SH21035 21035 YMR125W spliced 160.497462 252.596475 206.5469685 2.315018825 0.277511 203 73 SH11051 11051 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2141 2158 116.771951 201.178367 158.975159 2.201329268 0.277298 47 75 SH21405 21405 Pro8 spliced 189.296961 286.329313 237.813137 2.376235842 0.277238 97 2 SH19852 19852 Negative Control 28.778549 92.575807 60.677178 1.783025374 0.277236 136 100 SH2954 2954 Ser1 tRNA 1 13 259.77883 368.378395 314.0786125 2.497038364 0.277234 138 94 SH233 233 Arg3 21-36 21 36 47.196527 118.269409 82.732968 1.917678605 0.277128 36 6 SH6431 6431 snR45 snR45 1 18 99.378068 180.248588 139.813328 2.145548573 0.276985 102 47 SH6983 6983 snR60 5' - 16 -4 16 208.313118 308.601046 258.457082 2.412388437 0.276942 37 10 SH16674 16674 YFR032C-A_6_223758_223245_INTRON_1_331 intron 26.421133 105.692488 26.421133 80.271355 53.346244 1.727103847 0.276936 19 65 SH2010 2010 Lys3 5' flank - tRNA12 12 28.563206 91.724017 60.1436115 1.779189503 0.276919 131 14 SH20580 20580 YHR016C spliced 728.11539 897.084629 812.6000095 2.909876823 0.276779 102 22 SH18353 18353 YML124C_13_23684_22049_INTRON_26_323 3' exon 29.203016 122.547324 29.203016 94.344308 61.773662 1.790803347 0.276705 8 9 SH11739 11739 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5581 5599 37.349635 106.578675 71.964155 1.85711623 0.276614 202 77 SH2867 2867 Pro7 3' flank 25.687233 75.862972 50.7751025 1.705650809 0.276573 55 75 SH11776 11776 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5766 5781 38.832728 108.316376 73.574552 1.866727626 0.27636 25 41 SH2518 2518 Pro1 3' flank 29.65563 96.04562 62.850625 1.798309601 0.276355 139 11 SH860 860 Glu2 66-72 + 3' flank 66 38.72686 108.206381 73.4666205 1.866090063 0.276137 200 96 SH11331 11331 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3541 3556 11843.34246 10524.45354 11183.898 4.048593197 0.276002 124 46 SH9693 9693 RUF4 RUF4 241 262 27.705943 88.201663 57.953803 1.76308194 0.275913 199 72 SH2806 2806 Pro6 3' flank 36.298831 105.381928 70.8403795 1.850280879 0.275656 78 97 SH16099 16099 YDR059C_4_569765_569229_INTRON_48_137 intron 29.644407 124.707056 29.644407 96.062649 62.853528 1.79832966 0.275642 206 92 SH16814 16814 YGL178W_7_167356_170575_INTRON_4_643 intron 26.268125 104.720602 26.268125 79.452477 52.860301 1.723129632 0.275531 179 60 SH3229 3229 Thr1 tRNA 1 15 253.023398 360.943071 306.9832345 2.487114658 0.275426 44 94 SH8903 8903 LSR1 / U2 RNA U2 1156 1168 36.08173 105.133658 70.607694 1.848852028 0.275424 62 81 SH2684 2684 Pro4 tRNA 86 100 31.29043 98.874345 65.0823875 1.813463476 0.275411 13 61 SH12389 12389 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 42.880911 155.102192 42.880911 113.221281 78.051096 1.892379006 0.275383 49 82 SH21306 21306 YPL218W spliced 60.541584 134.139321 97.3404525 1.988293361 0.275249 77 87 SH11305 11305 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3411 3426 2790.451684 2962.943786 2876.697735 3.458894231 0.274974 191 77 SH11096 11096 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2366 2379 942.736264 1128.49777 1035.617017 3.015199178 0.274923 168 69 SH8240 8240 snoRNA cluster 3; 3' 26.111859 103.664789 26.111859 78.55293 52.3323945 1.718770607 0.274902 4 56 SH2012 2012 Lys3 tRNA 6 22 40.454458 110.309156 75.381807 1.877266544 0.274868 62 97 SH11634 11634 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5056 5073 133.724133 221.612986 177.6685595 2.249610581 0.274849 176 39 SH19246 19246 YPL129W_16_305297_306136_INTRON_10_114 5' exon 29.505097 124.224986 29.505097 95.719889 62.612493 1.796660996 0.274833 138 44 SH7691 7691 snoRNA cluster1 intergenic 34.033664 135.794754 34.033664 102.76109 68.397377 1.835039447 0.274786 204 38 SH7861 7861 snoRNA cluster1 intergenic 26.779459 108.392572 26.779459 82.613113 54.696286 1.737957838 0.274731 131 65 SH16694 16694 YGL031C_7_438393_437938_INTRON_1_456 5' exon 397.830899 926.961335 397.830899 530.130436 463.9806675 2.666499885 0.27468 125 37 SH15016 15016 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " cox2 / ORF1exon1 28.581789 119.552588 28.581789 91.970799 60.276294 1.780146543 0.274542 13 81 SH2748 2748 Pro5 3' flank 24.420473 68.884856 46.6526645 1.668876453 0.274506 192 64 SH4171 4171 SRP RNA 3' 43.971509 114.57329 79.2723995 1.899122004 0.274376 197 29 SH7151 7151 snR63 3' 26.444626 80.644395 53.5445105 1.728714953 0.274201 72 90 SH11819 11819 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5981 5998 36.158725 105.296732 70.7277285 1.84958971 0.274052 190 28 SH6836 6836 snR52 86-92 + 3' 86 26.433206 80.588948 53.511077 1.728443692 0.274043 178 84 SH21477 21477 copy of SH1444 31.905685 99.985265 65.945475 1.819185001 0.273862 166 103 SH11424 11424 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4006 4021 550.603064 703.476137 627.0396005 2.797294969 0.273847 9 92 SH21712 21712 copy of SH11292 28.677048 92.420982 60.549015 1.782107083 0.273678 166 43 SH7534 7534 snR79 snR79 11 28 28.571616 92.000177 60.2858965 1.780215724 0.273561 124 74 SH13577 13577 MT COX1 Exon 6 27.814356 115.750465 27.814356 88.936109 58.3752325 1.766228623 0.273462 80 2 SH4546 4546 U3b (snR17b) U3b 286 298 30.651873 97.901172 64.2765225 1.808052372 0.273396 124 71 SH6098 6098 snR37 3' 27.72343 88.549943 58.1366865 1.764450276 0.273277 73 99 SH116 116 Arg1 5' flank 31.522835 99.379271 65.451053 1.815916638 0.273225 149 29 SH238 238 Arg3 46-58 46 58 102.922466 184.966927 143.9446965 2.158195668 0.273026 74 3 SH19469 19469 ADH1 35.852085 104.989494 70.4207895 1.84770089 0.272944 119 7 SH20568 20568 YHR010W spliced 32.653019 101.186783 66.919901 1.82555529 0.27288 208 6 SH5116 5116 snR11 snR11 181 200 30.4355 97.564028 63.999764 1.806178373 0.272801 198 94 SH19447 19447 CYC1 26.366026 80.280438 53.323232 1.726916465 0.272799 74 8 SH11738 11738 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5576 5597 32.602963 101.134259 66.868611 1.825222302 0.2727 107 66 SH4009 4009 SRP RNA 5' 26.492524 81.057482 53.775003 1.730580443 0.272678 119 18 SH3606 3606 Val1 tRNA 26 41 77.926251 154.908653 116.417452 2.06601809 0.272628 198 29 SH18257 18257 YML056C_13_164176_162194_INTRON_461_868 5' exon 31.993837 131.19659 31.993837 100.202753 66.098295 1.820190257 0.272532 118 15 SH7126 7126 snR63 snR63 136 150 30.459252 97.618668 64.03896 1.80644427 0.272527 114 49 SH6463 6463 snR45 161-172 + 3' 161 26.277228 79.763431 53.0203295 1.724442422 0.272466 79 87 SH20042 20042 YBR189W spliced 125.171662 211.792781 168.4822215 2.22655408 0.272458 66 83 SH1858 1858 Leu9 tRNA-exon/intron 31 48 27.852572 89.162403 58.5074875 1.767211449 0.272435 88 40 SH16034 16034 YDL191W_4_117665_118518_INTRON_4_494 intron 31.925831 131.033074 31.925831 100.107243 66.016537 1.819652739 0.272198 67 35 SH10542 10542 RUF8 RUF8 636 653 26.489015 81.076838 53.7829265 1.73064443 0.272192 185 74 SH11061 11061 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2191 2209 59.47393 133.093328 96.283629 1.983552451 0.272155 135 91 SH17930 17930 YLR093C_12_327416_326514_INTRON_17_157 5' exon 33.993612 135.838148 33.993612 102.844536 68.419074 1.835177192 0.272145 127 87 SH8179 8179 snoRNA cluster 3; snR70 35.359518 138.81904 35.359518 104.459522 69.90952 1.84453632 0.272107 75 92 SH3715 3715 Val3 tRNA 56 68 34.09803 102.97503 68.53653 1.835922112 0.272028 124 90 SH11193 11193 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2851 2868 35.630942 104.796388 70.213665 1.846421643 0.271696 34 4 SH7480 7480 snR71 snR71 16 30 95.410115 176.044435 135.727275 2.13266713 0.271623 191 84 SH522 522 Cys1 5' flank 28.582741 92.194798 60.3887695 1.78095618 0.271495 23 2 SH3845 3845 RNaseP RNaseP 191 206 31.910987 100.122591 66.016789 1.819654397 0.271443 153 58 SH6912 6912 snR58 5' 29.183567 94.659057 61.921312 1.79184015 0.271386 51 52 SH17880 17880 YLR048W_12_242233_243350_INTRON_91_449 intron 38.750862 146.239022 38.750862 108.48816 73.619511 1.866992928 0.271345 54 33 SH7015 7015 snR60 3' 570.670073 727.137321 648.903697 2.812180248 0.271059 180 49 SH7562 7562 snR79 3' 27.089627 84.819382 55.9545045 1.747835054 0.271044 124 53 SH1954 1954 Lys2 5' flank 27.404895 86.775437 57.090166 1.756561306 0.270929 75 5 SH10933 10933 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1551 1569 32.285462 100.776259 66.5308605 1.823023141 0.270867 213 16 SH7693 7693 snoRNA cluster1 intergenic 27.804192 115.880537 27.804192 89.076345 58.4402685 1.766712203 0.270865 19 17 SH2136 2136 Met1 66-73 + 3' flank 66 29.406878 95.624989 62.5159335 1.795990721 0.270726 70 70 SH12230 12230 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.119193 133.987479 33.119193 101.868286 67.4937395 1.829263491 0.270579 146 73 SH846 846 Glu2 5' flank - tRNA15 15 534.03348 686.492201 610.2628405 2.785516926 0.270415 34 9 SH21320 21320 YPL249C-A spliced 28.404365 91.591563 59.997964 1.778136513 0.269777 28 80 SH1882 1882 Leu9 3' flank 421.25075 559.052428 490.151589 2.690330415 0.269165 49 103 SH11218 11218 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2976 2997 35.164997 104.382191 69.773594 1.843691094 0.269131 119 16 SH6589 6589 snR47 snR47 51 70 1047.377769 1244.139628 1145.758699 3.059093163 0.268945 67 65 SH15466 15466 YBL087C_2_60732_59815_INTRON_43_546 intron 27.585706 114.667341 27.585706 88.081635 57.8336705 1.762180756 0.26893 210 62 SH10943 10943 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1601 1616 30.786992 98.366655 64.5768235 1.810076678 0.268865 41 99 SH4559 4559 U3b (snR17b) U3b 351 367 26.959352 84.218281 55.5888165 1.744987428 0.268766 190 92 SH13181 13181 MT COX1 Exon4 147.407949 384.959477 147.407949 238.551528 192.9797385 2.285511714 0.268708 131 67 SH4154 4154 SRP RNA 661-675 + 3' 661 33.65603 102.614066 68.135048 1.833370566 0.26863 39 88 SH11399 11399 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3881 3897 121.426973 207.819587 164.62328 2.21649125 0.268463 62 35 SH21577 21577 copy of SH5623 26.582775 81.960883 54.271829 1.734574458 0.268372 206 75 SH3703 3703 Val3 5' flank - tRNA15 15 30.068936 97.177147 63.6230415 1.803614427 0.268151 157 43 SH14972 14972 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 130.750449 348.736255 130.750449 218.985806 174.8681275 2.24271066 0.268006 71 11 SH15161 15161 MT tRNA Val 5' / tRNA 38.776536 146.474102 38.776536 108.697566 73.737051 1.867685765 0.267962 177 5 SH3241 3241 Thr1 61-73 + 3' flank 61 40.90217 111.245024 76.073597 1.881233952 0.26796 121 79 SH4127 4127 SRP RNA SRP RNA 526 540 39.347862 109.36344 74.355651 1.87131398 0.2678 11 69 SH9732 9732 RUF4 RUF4 436 452 28.954162 93.984066 61.469114 1.788656953 0.267795 185 103 SH11990 11990 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S/3'ETS 6836 6858 26.330228 80.483969 53.4070985 1.727598984 0.267758 202 35 SH8978 8978 snR17a / U3a U3a 176 194 28.922108 93.86336 61.392734 1.788116974 0.267648 53 87 SH7918 7918 snoRNA cluster1 snR72 31.768271 130.856971 31.768271 100.0887 65.9284855 1.819073099 0.267592 59 50 SH14404 14404 MT 21S rRNA 21S rRNA3 27.10106 111.29195 27.10106 85.19089 56.145975 1.749318628 0.26759 178 82 SH18768 18768 YNL246W_14_185459_186348_INTRON_33_127 intron 99.017014 278.816836 99.017014 180.799822 139.908418 2.145843846 0.267505 111 47 SH10128 10128 RUF6 RUF6 486 502 206.426832 308.208125 257.3174785 2.410469287 0.267476 97 31 SH20687 20687 YIL133C spliced 40.530432 110.832629 75.6815305 1.878989906 0.267143 57 72 SH2408 2408 Phe4 91 + 3' flank 91 28.414421 91.827098 60.1207595 1.779024458 0.267074 201 97 SH10190 10190 RUF6 RUF6 796 812 70.479719 146.476876 108.4782975 2.035342861 0.266911 166 13 SH15930 15930 YDL108W_4_267697_268698_INTRON_29_109 3' exon 38.578943 146.125044 38.578943 108.546101 73.562522 1.86665661 0.266509 71 20 SH4094 4094 SRP RNA SRP RNA 361 375 34.360535 103.564539 68.962537 1.83861323 0.266487 54 104 SH2095 2095 Lys4 3' flank 28.734522 93.192178 60.96335 1.785068824 0.266313 128 57 SH4966 4966 snR9 3' 28.095391 90.598381 59.346886 1.773397936 0.266054 52 78 SH10976 10976 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1766 1781 7768.362365 7314.610722 7541.486544 3.87745696 0.265918 156 96 SH16242 16242 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 27.266661 112.628943 27.266661 86.362282 56.8144715 1.754458971 0.265918 168 102 SH6250 6250 snR42 snR42 31 49 27.29363 86.58795 56.94079 1.755423488 0.265264 148 87 SH3708 3708 Val3 tRNA 21 36 37.891089 107.821203 72.856146 1.862466194 0.265051 138 50 SH16920 16920 YGL251C_7_31636_27921_INTRON_59_210 intron 32.442464 132.755286 32.442464 101.312822 66.877643 1.825280959 0.265019 156 89 SH3282 3282 Thr2 tRNA 11 25 358.653082 487.725094 423.189088 2.626534461 0.264988 191 15 SH11862 11862 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6196 6213 36.95235 106.716775 71.8345625 1.856333451 0.264963 202 99 SH12440 12440 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.327016 124.061051 29.327016 95.734035 62.5305255 1.796092078 0.264893 41 101 SH15107 15107 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 26.935634 110.346811 26.935634 84.411177 55.6734055 1.745647788 0.264854 148 48 SH9296 9296 RUF1 RUF1 56 73 26.559362 82.121979 54.3406705 1.735124993 0.264775 180 56 SH12466 12466 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 31544.64165 56643.16343 31544.64165 25099.52178 28322.08171 4.452125171 0.264597 152 21 SH2913 2913 Pro8 tRNA 86 101 34.63351 103.983946 69.308728 1.840787928 0.264594 2 4 SH3333 3333 Thr3 tRNA 11 25 64.802186 139.92158 102.361883 2.010138266 0.264533 141 29 SH3951 3951 RNase MRP RNaseMRP 171 187 27.623848 88.725245 58.1745465 1.764733006 0.264474 56 83 SH17147 17147 YHR012W_8_129473_130440_INTRON_49_167 5' exon 28.193366 118.304526 28.193366 91.11116 59.652263 1.775626924 0.264469 133 55 SH8246 8246 snoRNA cluster4 5' 26.710225 108.778243 26.710225 83.068018 54.8891215 1.73948628 0.264433 202 98 SH4893 4893 snR8 3' 27.330089 86.892896 57.1114925 1.75672351 0.264387 50 39 SH12095 12095 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7361 7386 26.590229 82.352609 54.471419 1.736168689 0.264261 59 95 SH16571 16571 YER133W_5_432491_433954_INTRON_178_702 3' exon 49.514268 170.335862 49.514268 121.821594 85.667931 1.932818278 0.264227 73 41 SH2743 2743 Pro5 96-103 + 3' flank 96 27.441851 87.627962 57.5349065 1.759931412 0.263974 21 16 SH11055 11055 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2161 2174 243.248969 352.044656 297.6468125 2.473701236 0.263963 67 103 SH12839 12839 MT COX1 COX1ai1 35.267076 139.033576 35.267076 104.7665 70.016788 1.845202184 0.263899 192 61 SH593 593 Gln1 tRNA 6 23 31.866974 100.450956 66.158965 1.820588702 0.263892 196 40 SH4052 4052 SRP RNA SRP RNA 151 167 28.653815 93.042854 60.8483345 1.784248696 0.263826 126 90 SH4534 4534 U3b (snR17b) U3b 226 240 29.078777 94.802174 61.9404755 1.791974535 0.263666 161 70 SH9320 9320 RUF1 RUF1 176 193 26.408566 81.303066 53.855816 1.731232611 0.263665 84 42 SH8900 8900 LSR1 / U2 RNA U2 1141 1157 27.612579 88.735414 58.1739965 1.7647289 0.263582 8 75 SH11186 11186 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2816 2834 27.483045 87.925656 57.7043505 1.761208557 0.263534 79 84 SH11446 11446 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4116 4131 843.625169 1030.390187 937.007678 2.97174315 0.263523 86 101 SH20688 20688 YIL133C spliced 54.325454 127.610586 90.96802 1.958888742 0.263367 86 55 SH12055 12055 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7161 7179 26.225393 80.211674 53.2185335 1.726062903 0.263299 107 13 SH19712 19712 Negative Control 223.21215 328.785694 275.998922 2.440907386 0.263046 129 73 SH8035 8035 snoRNA cluster 2 snR55 34.522698 137.45402 34.522698 103.931322 69.22701 1.840275574 0.263022 39 3 SH6517 6517 snR46 snR46 76 93 29.148349 95.140548 62.1444485 1.793402338 0.262975 158 60 SH8594 8594 snR19 / U1 RNA U1 466 482 26.854418 84.088202 55.47131 1.744068422 0.262821 62 73 SH3628 3628 Val1 3' flank 119.356546 206.015674 162.68611 2.211350475 0.2628 186 91 SH13338 13338 MT COX1 COX1-ai5a 28.762081 121.328048 28.762081 93.565967 61.164024 1.78649605 0.262755 123 44 SH8982 8982 snR17a / U3a U3a 196 212 29.477198 96.440787 62.9589925 1.79905777 0.262576 23 6 SH10942 10942 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1596 1613 29.826184 97.046511 63.4363475 1.802338169 0.262567 169 68 SH20210 20210 YDR059C spliced 44.294388 115.667221 79.9808045 1.902985768 0.262437 3 10 SH2534 2534 Pro2 5' flank 32.865027 101.963938 67.4144825 1.828753205 0.262343 191 65 SH12469 12469 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 4496.110154 9033.900262 4496.110154 4538.790108 4517.450131 3.654893367 0.262273 27 52 SH1268 1268 Ile2 tRNA exon/intron 36 52 27.880508 89.993567 58.9370375 1.770388302 0.262224 92 10 SH2877 2877 Pro8 5' flank 30.095429 97.529204 63.8123165 1.804904511 0.26222 100 96 SH1936 1936 Lys1 3' flank 26.918292 84.542906 55.730599 1.746093711 0.262104 32 24 SH16223 16223 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 28.287712 118.957208 28.287712 91.669496 59.978604 1.777996353 0.262064 83 30 SH16850 16850 YGL183C_7_157071_156547_INTRON_4_86 exon/intron 28.028747 117.640132 28.028747 90.611385 59.320066 1.773201626 0.262046 126 39 SH9193 9193 snR7 U5 RNA 3' 26.661949 82.985336 54.8236425 1.738967887 0.261947 160 18 SH18770 18770 YNL246W_14_185459_186348_INTRON_33_127 intron 28.152336 118.27762 28.152336 91.125284 59.63881 1.775528969 0.261925 12 86 SH567 567 Cys1 3' flank 25.788163 77.651409 51.719786 1.713656719 0.261867 143 62 SH14935 14935 MT tRNA Asn tRNA 51.883303 175.683773 51.883303 124.80047 88.3418865 1.946166669 0.261832 190 38 SH4908 4908 snR9 5' 26.360635 81.17729 53.7689625 1.730531657 0.261703 55 100 SH4657 4657 snR3 3' 24.056492 67.814874 45.935683 1.662150178 0.261577 24 82 SH12480 12480 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S/3' flank 96.605133 274.117511 96.605133 178.512378 137.5587555 2.138488238 0.261557 40 31 SH6265 6265 snR42 snR42 106 122 25.508301 75.989505 50.748903 1.705426659 0.261492 199 54 SH7408 7408 snR69 5' 26.41905 81.549752 53.984401 1.732268287 0.26147 33 41 SH7869 7869 snoRNA cluster1 snR73 45.044595 160.693784 45.044595 116.649189 80.846892 1.907663329 0.261282 119 103 SH16237 16237 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 374.350608 880.758568 374.350608 507.40796 440.879284 2.644319693 0.261039 8 33 SH3767 3767 Val4 tRNA 61 73 27.884185 90.099636 58.9919105 1.770792461 0.260935 51 8 SH11282 11282 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3296 3313 29.389367 96.291983 62.840675 1.798240841 0.260908 89 2 SH19726 19726 Negative Control 27.850709 89.967592 58.9091505 1.77018276 0.260869 6 35 SH2783 2783 Pro6 tRNA 6 22 397.261707 534.228951 465.745329 2.668148508 0.260855 204 78 SH5476 5476 snR32 snR32 41 60 25.879304 78.290878 52.085091 1.716713427 0.260835 180 97 SH18957 18957 YOL127W_15_80347_81189_INTRON_14_427 intron 26.682177 108.886739 26.682177 83.204562 54.9433695 1.73991529 0.260824 10 35 SH21589 21589 copy of SH6250 27.573376 88.747834 58.160605 1.764628916 0.260731 82 42 SH1754 1754 Leu7 tRNA 66 80 75.345679 152.839925 114.092802 2.057258246 0.260655 55 56 SH4901 4901 snR9 5' 32.771258 101.934694 67.352976 1.82835679 0.260601 24 24 SH7893 7893 snoRNA cluster1 intergenic 177.906496 452.679956 177.906496 275.77346 226.839978 2.355719596 0.260455 2 85 SH15482 15482 YBL092W_2_45639_46364_INTRON_1_333 5' exon 431.182975 1003.876134 431.182975 573.693159 502.438067 2.701082536 0.260439 99 53 SH3754 3754 Val4 5' flank - tRNA10 10 278.00868 393.858087 335.9333835 2.526253164 0.260283 122 60 SH2097 2097 Lys4 3' flank 26.118721 79.814265 52.966493 1.724001219 0.260182 29 59 SH6352 6352 snR43 snR43 1 15 47.458408 119.608531 83.5334695 1.92186052 0.260097 119 14 SH10604 10604 RUF8 946-951 + 3' 946 38.156414 108.400407 73.2784105 1.86497604 0.25998 122 82 SH6632 6632 snR48 5' - 2 -14 2 30.050455 97.572987 63.811721 1.804900458 0.259877 124 20 SH7035 7035 snR62 5' 124.138282 212.136167 168.1372245 2.225663874 0.259852 133 79 SH6931 6931 snR58 snR58 16 33 29.562415 96.731742 63.1470785 1.800353263 0.259792 20 71 SH16958 16958 YGR029W_7_543547_544199_INTRON_87_169 intron/exon 26.832811 110.059366 26.832811 84.226555 55.529683 1.744525194 0.259681 133 48 SH9431 9431 RUF2 5' - 13 -4 13 29.693706 96.965959 63.3298325 1.801608339 0.259673 205 57 SH11478 11478 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4276 4291 396.862644 534.196244 465.529444 2.667947155 0.259604 35 55 SH4620 4620 snR3 snR3 16 30 33.100008 102.390304 67.745156 1.830878247 0.259533 162 48 SH6770 6770 snR50 snR50 26 42 28.381207 92.239774 60.3104905 1.780392861 0.259475 78 8 SH9448 9448 RUF2 RUF2 81 97 31.149504 99.475566 65.312535 1.814996541 0.259469 212 42 SH15348 15348 YBL018C_2_186436_185960_INTRON_48_122 intron 25.574738 101.132439 25.574738 76.557701 51.0662195 1.708133708 0.25939 78 82 SH9150 9150 snR7 U5 RNA U5 21 33 32378.25747 25770.19493 29074.2262 4.463508165 0.259352 53 37 SH20088 20088 YDL012C spliced 40.273637 110.951402 75.6125195 1.87859371 0.259307 57 103 SH6761 6761 snR50 5' 98.052085 180.493503 139.272794 2.143866288 0.259282 178 54 SH5025 5025 snR10 snR10 156 171 27.839249 90.039916 58.9395825 1.770407055 0.259182 57 44 SH19928 19928 YBL018C spliced 27.503101 88.463856 57.9834785 1.763304266 0.25898 21 60 SH4202 4202 telomerase RNA telomerase 46 60 34.153539 103.693706 68.9236225 1.838368095 0.258972 140 88 SH11436 11436 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4066 4081 76.736184 154.631978 115.684081 2.063273601 0.258969 71 44 SH4754 4754 snR5 5' 27.449211 88.137314 57.7932625 1.761877212 0.258837 81 65 SH7717 7717 snoRNA cluster1 snR77 27.218702 112.918015 27.218702 86.699313 56.9590075 1.755562413 0.258758 150 101 SH2705 2705 Pro5 5' flank 43.777183 115.253608 79.5153955 1.900451223 0.258666 21 43 SH20044 20044 YBR189W spliced 34.27274 103.860912 69.066826 1.839269498 0.258486 85 101 SH15958 15958 YDL130W_4_229906_230527_INTRON_115_415 intron 188.372949 475.926224 188.372949 288.553275 238.463112 2.377421207 0.258486 117 45 SH13224 13224 MT COX1 COX1-ai4 29.218396 123.991867 29.218396 95.773471 62.4959335 1.795851759 0.258391 207 23 SH5292 5292 snR30 snR30 311 327 38.516087 108.906562 73.7113245 1.867534215 0.258362 204 49 SH761 761 Gln4 3' flank 28.763082 93.89326 61.328171 1.787660013 0.258361 107 54 SH12731 12731 MT COX1 Exon1 29.636887 125.575127 29.636887 96.93824 63.2875635 1.801318376 0.258294 183 63 SH16643 16643 YFR024C-A_6_203420_201947_INTRON_48_165 3' exon 34.080943 136.721907 34.080943 103.640964 68.8609535 1.837973032 0.258286 203 3 SH17067 17067 YGR214W_7_920570_921783_INTRON_91_545 intron 26.202896 105.697093 26.202896 80.494197 53.3485465 1.727122591 0.258282 149 2 SH18726 18726 YNL147W_14_350937_351380_INTRON_19_138 intron 26.819468 110.086151 26.819468 84.266683 55.5430755 1.744629924 0.258266 189 43 SH13223 13223 MT COX1 COX1-ai4 28.39888 119.79948 28.39888 92.4006 60.39974 1.781035069 0.258258 2 77 SH29 29 Ala1 tRNA 41 53 1246.976964 1464.417046 1355.697005 3.132162637 0.258205 58 44 SH20277 20277 YDR450W spliced 27.32316 87.405799 57.3644795 1.758643057 0.258166 177 50 SH16806 16806 YGL137W_7_249872_252741_INTRON_19_218 intron 26.902752 110.698653 26.902752 84.795901 55.8493265 1.74701794 0.258088 75 77 SH8273 8273 snoRNA cluster4 snR67 80.520215 238.85688 80.520215 159.336665 119.92844 2.078922185 0.258051 39 104 SH7200 7200 snR64 snR64 66 83 27.527113 88.700143 58.113628 1.764277989 0.258047 154 78 SH7567 7567 snR189 5' 25.207034 74.457032 49.832033 1.697508605 0.258042 63 44 SH15411 15411 YBL059C-A_2_110500_110086_INTRON_35_119 intron/exon 26.906542 110.737024 26.906542 84.830482 55.868512 1.747167105 0.25796 139 64 SH10791 10791 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 841 861 26.162032 80.275427 53.2187295 1.726064502 0.257872 10 88 SH1472 1472 Leu2 3' flank 27.469356 88.362196 57.915776 1.76279688 0.257755 52 40 SH20406 20406 YFR031C-A spliced 42.607085 113.903128 78.2551065 1.893512687 0.257697 209 97 SH4850 4850 snR8 snR8 31 47 81.589512 160.663442 121.126477 2.083239086 0.257659 99 79 SH6871 6871 snR56 5' - 5 -14 5 28.134119 91.356266 59.7451925 1.776302965 0.257656 148 24 SH11559 11559 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4681 4697 41428.27194 32047.43896 36737.85545 4.565113801 0.257622 121 14 SH9260 9260 snR6 / U6 RNA 3' 28.593802 93.253419 60.9236105 1.784785633 0.257567 130 99 SH2490 2490 Pro1 5' flank 292.66738 411.924365 352.2958725 2.546907555 0.257529 157 10 SH1413 1413 Leu1 3' flank 53.373863 126.851297 90.11258 1.954785424 0.257498 10 41 SH3818 3818 RNaseP RNaseP 56 68 482.486229 633.707046 558.0966375 2.746709406 0.257467 25 48 SH16102 16102 YDR059C_4_569765_569229_INTRON_48_137 3' exon 44.17877 158.998139 44.17877 115.819369 79.9990695 1.903084936 0.257448 6 78 SH11414 11414 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3956 3973 3406.708054 3570.2531 3488.480577 3.542636309 0.257431 64 100 SH8430 8430 snoRNA cluster 5 intergenic 72.491486 221.179605 72.491486 149.688119 111.0898025 2.045674195 0.257431 40 4 SH19953 19953 YBL050W spliced 1550.613719 1781.623404 1666.118562 3.221705903 0.257362 2 93 SH1929 1929 Lys1 3' flank 31.741613 100.592867 66.16724 1.82064302 0.257285 31 98 SH9181 9181 snR7 U5 RNA U5 176 192 26.576414 82.869829 54.7231215 1.738170862 0.257165 54 87 SH12907 12907 MT COX1 COX1ai2 27.89931 117.328715 27.89931 90.429405 59.1643575 1.772060153 0.257152 133 24 SH13986 13986 MT COB intronic 30476.61926 54945.10708 30476.61926 24469.48782 27473.05354 4.438906932 0.257095 152 19 SH8803 8803 LSR1 / U2 RNA U2 656 670 131.737966 221.596058 176.667012 2.247155464 0.25704 188 98 SH20690 20690 YIL133C spliced 273.489292 389.330209 331.4097505 2.520365282 0.257033 52 75 SH81 81 Ala2 41-56 41 56 877.885862 1071.887968 974.886915 2.988954241 0.256993 126 38 SH1333 1333 Ile3 tRNA-intron 46 61 28.640619 93.499537 61.070078 1.785828475 0.256843 177 48 SH6362 6362 snR43 snR43 51 70 31.144232 99.60897 65.376601 1.815422337 0.256775 153 70 SH10308 10308 RUF7 RUF7 151 163 160.997633 256.365671 208.681652 2.319484266 0.256756 36 64 SH19605 19605 RNA14 1.1 31.948562 100.983543 66.4660525 1.822599886 0.256491 197 35 SH11980 11980 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6786 6803 46.56848 118.771279 82.6698795 1.917347305 0.256478 72 58 SH3657 3657 Val2 tRNA 26 41 67.912575 144.278179 106.095377 2.02569646 0.256334 17 82 SH5572 5572 snR33 snR33 146 165 26.248917 80.948536 53.5987265 1.729154471 0.256288 69 2 SH16649 16649 YFR031C-A_6_221405_220494_INTRON_5_151 intron 28.895111 122.490525 28.895111 94.595414 61.7452625 1.790603641 0.256242 210 29 SH9949 9949 RUF5-1 RUF5-1 551 567 27.319044 87.555234 57.437139 1.759192799 0.256213 51 25 SH13695 13695 MT ORF 5 (hypothetical) 3' 29.032698 123.208483 29.032698 95.175785 62.1042415 1.793121262 0.256099 156 2 SH10827 10827 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1021 1040 1516.965453 1748.411157 1632.688305 3.212903282 0.256091 47 65 SH9068 9068 snR14 / U4 RNA 5' 26.34984 81.593413 53.9716265 1.732165506 0.255936 81 33 SH4627 4627 snR3 snR3 51 70 27.927524 90.635536 59.28153 1.772919404 0.255878 46 99 SH21664 21664 copy of SH9399 27.524015 88.897623 58.210819 1.76500371 0.255664 10 102 SH855 855 Glu2 tRNA 41 53 3624.045348 3773.566501 3698.805925 3.568061545 0.255623 21 81 SH4492 4492 U3b (snR17b) U3b 16 37 24.520419 70.76947 47.6449445 1.678016825 0.25549 187 24 SH8170 8170 snoRNA cluster 3; snR70 25.897483 103.746764 25.897483 78.849281 52.373382 1.719110619 0.255396 61 27 SH523 523 Cys1 5' flank 28.724967 93.955192 61.3400795 1.787744335 0.255384 7 15 SH5482 5482 snR32 snR32 71 86 31.654911 100.55733 66.1061205 1.820241671 0.255212 65 78 SH5321 5321 snR30 snR30 456 473 33.21046 102.740923 67.9756915 1.832353634 0.255185 105 103 SH18693 18693 YNL112W_14_413636_416278_INTRON_1274_2275 intron/exon 24.309986 92.955509 24.309986 69.645523 46.9777545 1.671892254 0.255032 58 30 SH4713 4713 snR4 snR4 101 115 31.369863 100.092298 65.7310805 1.817770771 0.254885 39 40 SH7016 7016 snR60 3' 163.323072 259.394535 211.3588035 2.325020342 0.25486 134 2 SH7191 7191 snR64 snR64 21 37 209.434098 314.194906 261.814502 2.417993699 0.254801 86 50 SH15716 15716 YBR220C_2_663261_662457_INTRON_302_722 3' exon 25.654061 102.080657 25.654061 77.426596 51.5403285 1.712147182 0.254578 12 50 SH7102 7102 snR63 snR63 16 33 25.341328 75.534156 50.437742 1.702755636 0.254565 114 80 SH8563 8563 snR19 / U1 RNA U1 311 327 31.946188 101.08854 66.517364 1.82293503 0.254459 52 7 SH19459 19459 CYC1 143.765821 236.294739 190.03028 2.278822808 0.254296 164 25 SH9070 9070 snR14 / U4 RNA 5' 24.419265 70.300595 47.35993 1.675411052 0.254248 71 56 SH21143 21143 YNL162W spliced 29.054281 95.408511 62.231396 1.794009543 0.254183 178 41 SH11011 11011 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1941 1959 27.493775 88.84556 58.1696675 1.764696581 0.254135 111 42 SH11589 11589 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4831 4846 411.067336 552.694049 481.8806925 2.682939526 0.254065 182 2 SH2068 2068 Lys4 tRNA 6 22 33.001032 102.545397 67.7732145 1.831058085 0.253956 91 82 SH6637 6637 snR48 snR48 11 30 102.284948 186.254321 144.2696345 2.159174932 0.253854 152 4 SH3293 3293 Thr2 66-72 + 3' flank 66 39.657047 110.488468 75.0727575 1.875482368 0.253764 30 13 SH854 854 Glu2 tRNA 36 48 1344.122424 1570.957722 1457.540073 3.163620504 0.253748 182 56 SH21748 21748 copy of SH12763 30.810659 99.204725 65.007692 1.812964747 0.253652 128 74 SH8454 8454 snoRNA cluster 5 snR128 47.061957 165.596232 47.061957 119.534275 83.298116 1.920635179 0.253596 44 19 SH19461 19461 CYC1 35.000608 104.97866 69.989634 1.845033722 0.253517 14 90 SH10372 10372 RUF7 RUF7 471 485 243.660245 354.861851 299.261048 2.476050192 0.253483 120 15 SH4865 4865 snR8 snR8 106 121 32.351952 101.772093 67.0620225 1.826476647 0.253381 122 72 SH8772 8772 LSR1 / U2 RNA U2 501 518 27.449992 88.639868 58.04493 1.763764292 0.253349 206 91 SH4646 4646 snR3 snR3 146 165 26.369613 81.934269 54.151941 1.733614028 0.253306 12 5 SH4687 4687 snR4 5' 27.02427 85.981281 56.5027755 1.752069782 0.253167 13 21 SH4845 4845 snR8 snR8 6 24 57.4739 132.048913 94.7614065 1.976631498 0.253136 204 13 SH9439 9439 RUF2 RUF2 36 54 27.849532 90.51406 59.181796 1.772188141 0.253083 152 78 SH5664 5664 snR34 snR34 241 257 29.565748 97.100356 63.333052 1.801630417 0.252739 66 103 SH11356 11356 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3666 3679 6117.033555 5982.113443 6049.573499 3.781724758 0.252728 130 96 SH8021 8021 snoRNA cluster 2 snR55 204.332809 511.889093 204.332809 308.556284 256.4445465 2.408993468 0.252728 197 24 SH8554 8554 snR19 / U1 RNA U1 266 282 26.028113 79.880593 52.954353 1.723901666 0.252683 40 59 SH17571 17571 YJL189W_10_75932_76473_INTRON_7_392 intron/exon 27.517394 115.646838 27.517394 89.129444 58.323419 1.765842975 0.252666 207 52 SH20570 20570 YHR010W spliced 30.682753 99.039495 64.861124 1.81198447 0.252626 46 81 SH1801 1801 Leu8 tRNA-exon/intron 31 48 27.699476 89.93436 58.816918 1.769502264 0.252569 21 79 SH16354 16354 YDR500C_4_1450856_1450201_INTRON_8_396 intron 24.542222 94.643123 24.542222 71.100901 47.8215615 1.679623753 0.252543 5 43 SH1328 1328 Ile3 tRNA 21 37 28.440289 92.994493 60.717391 1.783313102 0.252439 63 58 SH18912 18912 YOL120C_15_94401_93394_INTRON_113_559 intron 27.226811 113.541829 27.226811 87.315018 57.2709145 1.757934118 0.25243 120 2 SH11090 11090 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2336 2349 379.64304 516.471079 448.0570595 2.651333324 0.25241 90 52 SH8212 8212 snoRNA cluster 3; snR51 25.966917 104.491607 25.966917 79.52469 52.7458035 1.722187913 0.252409 128 84 SH4248 4248 telomerase RNA telomerase 276 295 24.631361 71.607455 48.119408 1.682320276 0.252374 166 2 SH20763 20763 YJR145C spliced 96.092872 178.832102 137.462487 2.138184197 0.252367 80 14 SH5614 5614 snR34 5' - 8 -9 8 26.911876 85.352016 56.131946 1.749210099 0.252364 143 38 SH4542 4542 U3b (snR17b) U3b 266 280 33.207088 102.877157 68.0421225 1.832777852 0.252361 174 44 SH9368 9368 RUF1 RUF1 416 433 27.003316 85.9431 56.473208 1.751842459 0.252118 119 63 SH20551 20551 YGR225W spliced 26.834183 84.896251 55.865217 1.74714149 0.252059 26 26 SH4126 4126 SRP RNA SRP RNA 521 533 114.791547 201.787805 158.289676 2.19945259 0.251949 198 10 SH7061 7061 snR62 96-100 + 3' 96 26.35495 81.959397 54.1571735 1.73365599 0.251944 96 71 SH6829 6829 snR52 snR52 51 70 28.702498 94.119411 61.4109545 1.788245848 0.251898 148 56 SH11205 11205 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2911 2929 69.944163 147.034079 108.489121 2.03538619 0.251874 8 62 SH2863 2863 Pro7 3' flank 69.140572 146.08889 107.614731 2.031871724 0.251809 123 18 SH5029 5029 snR10 snR10 176 193 30.39215 98.584651 64.4884005 1.809481605 0.251768 17 87 SH286 286 Arg4 26-40 26 40 29.9091 97.753866 63.831483 1.805034935 0.251666 140 25 SH11690 11690 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5336 5349 41106.85971 31953.39452 36530.12711 4.562651183 0.251615 126 62 SH20351 20351 YER102W spliced 31.16328 99.918283 65.5407815 1.816511616 0.251546 113 83 SH18617 18617 YNL069C_14_494998_493953_INTRON_29_477 3' exon 48.291729 168.426542 48.291729 121.134813 84.713271 1.927951451 0.251434 85 75 SH3007 3007 Ser2 5' flank - tRNA12 12 131.007276 221.462632 176.234954 2.24609205 0.251389 63 54 SH8610 8610 snR19 / U1 RNA U1 546 562 28.616191 93.80388 61.2100355 1.786822631 0.251327 31 79 SH8827 8827 LSR1 / U2 RNA U2 776 793 25.747618 78.265961 52.0067895 1.716060045 0.251295 114 100 SH2319 2319 Phe3 5' flank 56.138065 130.600817 93.369441 1.970204759 0.251214 4 63 SH14520 14520 MT 21S rRNA 21S rRNA3 34.434659 137.863034 34.434659 104.428375 69.431517 1.841556654 0.251068 59 79 SH18184 18184 YLR448W_12_1028848_1029762_INTRON_16_399 3' exon 29.502909 125.583051 29.502909 97.080142 63.2915255 1.801345563 0.251001 76 93 SH4750 4750 snR5 5' 10381.06473 9527.840187 9954.452459 3.998017377 0.250944 126 37 SH8545 8545 snR19 / U1 RNA U1 221 236 32.54954 102.14044 67.34499 1.828305293 0.250884 88 27 SH21107 21107 YNL069C spliced 28.609519 93.809429 61.209474 1.786818647 0.250876 41 21 SH5657 5657 snR34 snR34 206 224 29.183092 96.195464 62.689278 1.797193268 0.25084 76 41 SH17018 17018 YGR148C_7_788173_787307_INTRON_1_392 intron 27.552051 116.009746 27.552051 89.457695 58.504873 1.767192041 0.250745 52 8 SH12262 12262 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 366.311603 866.61555 366.311603 501.303947 433.807775 2.637297331 0.250739 164 86 SH12248 12248 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.677804 128.809784 30.677804 99.13198 64.904892 1.812277432 0.250706 60 81 SH12395 12395 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 38.84261 147.544487 38.84261 109.701877 74.2722435 1.870826543 0.250604 210 100 SH9608 9608 RUF3 426-431 + 3' 426 26.069607 80.324348 53.1969775 1.725886958 0.250461 212 92 SH3931 3931 RNase MRP RNaseMRP 71 87 32.877817 102.567638 67.7227275 1.830734441 0.250451 89 101 SH17701 17701 YKL081W_11_282533_284097_INTRON_206_531 5' exon 27.349752 114.619651 27.349752 88.269899 57.8098255 1.762001658 0.250436 44 16 SH11663 11663 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5201 5216 30.397346 98.671629 64.5344875 1.809791865 0.250278 103 93 SH18097 18097 YLR367W_12_855877_857316_INTRON_698_1180 intron 28.491871 120.899404 28.491871 93.407533 60.949702 1.784971587 0.24971 180 71 SH17686 17686 YKL006W_11_431544_432358_INTRON_130_527 intron 25.95284 104.631028 25.95284 79.678188 52.815514 1.722761511 0.24952 74 78 SH11036 11036 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2066 2083 56.215632 130.80974 93.512686 1.970870532 0.249512 47 42 SH20493 20493 YGL251C spliced 29.005368 95.563197 62.2842825 1.794378466 0.249404 18 7 SH16995 16995 YGR118W_7_726968_727725_INTRON_66_385 intron 34.336911 137.733578 34.336911 104.396667 69.366789 1.841151591 0.249373 152 26 SH2933 2933 Pro8 3' flank 127.183015 217.108611 172.145813 2.235896464 0.249366 44 72 SH6638 6638 snR48 snR48 16 35 71.814671 149.531197 110.672934 2.044041423 0.249345 90 16 SH901 901 Glu3 tRNA 16 30 1781.804195 2027.726763 1904.765479 3.279841512 0.249335 174 50 SH11275 11275 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3261 3278 35.125719 105.342912 70.2343155 1.846549354 0.249269 81 76 SH5026 5026 snR10 snR10 161 178 24.084127 68.816346 46.4502365 1.66698793 0.249221 140 49 SH10443 10443 RUF8 RUF8 141 156 105.295067 190.469958 147.8825125 2.169916821 0.249106 34 11 SH11056 11056 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2166 2182 73.101769 151.115606 112.1086875 2.049639268 0.24909 77 29 SH14918 14918 MT tRNA Tyr tRNA 27.827356 117.535569 27.827356 90.708213 59.2677845 1.772818693 0.249068 11 91 SH9229 9229 snR6 / U6 RNA U6 16 31 36.681721 107.22678 71.9542505 1.857056454 0.249031 7 16 SH14408 14408 MT 21S rRNA 21S rRNA3 364.468211 863.162066 364.468211 499.693855 432.081033 2.635565203 0.248972 210 20 SH11520 11520 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4486 4508 111.167021 197.704853 154.435937 2.188748367 0.248927 62 51 SH5545 5545 snR33 snR33 11 26 28.840698 94.914885 61.8777915 1.791534805 0.248909 41 46 SH10317 10317 RUF7 RUF7 196 212 28.522533 93.597218 61.0598755 1.785755914 0.248857 140 32 SH12233 12233 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.273891 124.998988 29.273891 96.725097 62.999494 1.799337061 0.248846 61 72 SH4162 4162 SRP RNA 3' 28.269211 92.564852 60.4170315 1.781159383 0.248622 25 4 SH11785 11785 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5811 5824 39961.06718 31229.9518 35595.50949 4.551395214 0.24859 5 38 SH17125 17125 YHR010W_8_126513_127484_INTRON_32_592 intron 25.969623 104.841807 25.969623 79.872184 52.9209035 1.72362725 0.248443 105 36 SH13011 13011 MT COX1 COX1ai2 26.466908 108.409747 26.466908 82.942839 54.7048735 1.738026018 0.248418 118 10 SH2184 2184 Met2 tRNA 51 65 84.88144 165.51343 125.197435 2.097595431 0.248392 61 46 SH19061 19061 YOR234C_15_779404_778554_INTRON_20_546 3' exon 28.990013 123.578614 28.990013 95.588601 62.289307 1.794413499 0.248212 120 102 SH798 798 Glu1 tRNA 6 22 3119.390065 3324.818817 3222.104441 3.508139613 0.248159 67 14 SH18249 18249 YML034W_13_209525_212155_INTRON_1921_2046 intron 27.472043 115.731098 27.472043 89.259055 58.365549 1.766156575 0.248098 101 67 SH2052 2052 Lys4 5' flank 26.474398 83.022836 54.748617 1.738373153 0.248019 193 7 SH9662 9662 RUF4 RUF4 86 102 34.364056 104.498258 69.431157 1.841554402 0.248007 168 47 SH21271 21271 YPL090C spliced 35.762762 106.173508 70.968135 1.851063392 0.247836 72 43 SH21088 21088 YNL012W spliced 472.921811 626.709029 549.81542 2.740216916 0.247766 205 36 SH11416 11416 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3966 3983 78.32806 157.576309 117.9521845 2.071705989 0.247699 105 23 SH19998 19998 YBR048W spliced 98.952945 182.791149 140.872047 2.148824825 0.247665 65 76 SH21189 21189 YOL120C spliced 27.485363 89.387609 58.436486 1.766684092 0.247621 123 19 SH9668 9668 RUF4 RUF4 116 133 26.484 83.118808 54.801404 1.738791685 0.247585 81 21 SH5483 5483 snR32 snR32 76 92 27.957362 91.350904 59.654133 1.775640538 0.247578 59 16 SH10835 10835 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1061 1079 45.462709 117.979818 81.7212635 1.912335073 0.247498 204 32 SH6508 6508 snR46 snR46 31 47 28.674174 94.340563 61.5073685 1.788927147 0.247316 146 80 SH21431 21431 Tyr1_2 spliced 44.259196 116.519269 80.3892325 1.905197882 0.247283 107 15 SH21715 21715 copy of SH11500 35.662003 106.07928 70.8706415 1.850466364 0.247275 168 65 SH4543 4543 U3b (snR17b) U3b 271 285 28.189813 92.3428 60.2663065 1.780074576 0.247152 149 15 SH1150 1150 His1 5' flank 28.835243 95.025732 61.9304875 1.791904499 0.247117 199 35 SH1517 1517 Leu3 tRNA-intron/exon 56 73 42.240547 114.070301 78.155424 1.892959124 0.247025 71 5 SH17491 17491 YJL041W_10_365480_368069_INTRON_2_119 5' exon 55.597344 184.844223 55.597344 130.246879 92.9221115 1.96811907 0.246941 120 89 SH7138 7138 snR63 snR63 196 213 51.857646 125.742284 88.799965 1.948412795 0.246808 6 57 SH1197 1197 Ile1 5' flank 27.242488 87.928232 57.58536 1.760312086 0.246708 89 57 SH9032 9032 snR17a / U3a U3a 446 458 1248.250641 1477.065744 1362.658193 3.134386932 0.246516 62 2 SH16017 16017 YDL189W_4_122079_123590_INTRON_1_99 5' exon 33.518421 136.071938 33.518421 103.553517 68.535969 1.835918557 0.246433 123 3 SH8590 8590 snR19 / U1 RNA U1 446 464 26.88902 85.733488 56.311254 1.750595199 0.246394 12 91 SH6610 6610 snR47 3' 27.019409 86.559792 56.7896005 1.754268814 0.246287 170 20 SH11434 11434 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4056 4074 37.52507 108.38162 72.953345 1.86304521 0.246284 65 91 SH1335 1335 Ile3 tRNA-intron 56 72 29.365242 97.084885 63.2250635 1.800889274 0.246225 13 22 SH20985 20985 YML067C spliced 29.610263 97.518125 63.564194 1.803212544 0.246158 73 72 SH2403 2403 Phe4 tRNA 66 80 29.478789 97.288426 63.3836075 1.801976954 0.246144 53 99 SH16523 16523 YER131W_5_423587_424307_INTRON_1_361 intron 317.274077 760.752721 317.274077 444.478644 380.8763605 2.580784019 0.245763 203 77 SH5086 5086 snR11 snR11 31 46 33.760579 103.882959 68.821769 1.837725832 0.245745 206 46 SH18023 18023 YLR306W_12_744151_744851_INTRON_4_137 intron 58.126525 190.468022 58.126525 133.341497 95.734011 1.981066255 0.245676 67 61 SH6604 6604 snR47 3' 28.151026 92.294647 60.2228365 1.779761207 0.245599 12 43 SH4482 4482 U3b (snR17b) 5' 25.406814 76.647329 51.0270715 1.707800644 0.245561 90 28 SH1299 1299 Ile2 3' flank 28.943411 95.594482 62.2689465 1.794271518 0.245542 103 95 SH3142 3142 Ser4 3' flank 28.42826 93.450839 60.9395495 1.784899239 0.245519 137 36 SH8400 8400 snoRNA cluster 5 snR190 26.069738 105.817406 26.069738 80.747668 53.408703 1.727612032 0.245447 31 46 SH2447 2447 Phe5 tRNA 6 20 30.589861 99.257566 64.9237135 1.812403353 0.245446 63 43 SH15057 15057 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 28.776603 122.689689 28.776603 94.913086 61.8448445 1.791303502 0.245349 63 92 SH19542 19542 CBP1 1.2 27.087083 87.079163 57.083123 1.756507725 0.245236 103 83 SH10316 10316 RUF7 RUF7 191 208 25.604226 77.886331 51.7452785 1.713870729 0.245167 19 6 SH19567 19567 AEP2/ATP13 0.6 25.669268 78.28741 51.978339 1.715822397 0.245153 180 96 SH4681 4681 snR4 5' 26.661714 84.42606 55.543887 1.744636269 0.245153 191 47 SH1565 1565 Leu4 5' flank - tRNA12 12 52.680685 126.829832 89.7552585 1.953059902 0.245087 29 16 SH13182 13182 MT COX1 Exon4 27.739356 117.368458 27.739356 90.629102 59.184229 1.772205994 0.245078 183 90 SH14349 14349 MT ORF9 and ORF10 (hypothetical) 5' 25.556658 102.186899 25.556658 77.630241 51.5934495 1.712594565 0.244727 70 32 SH599 599 Gln1 tRNA 36 50 80.752889 160.814889 120.783889 2.082009009 0.244682 10 87 SH15376 15376 YBL027W_2_168385_169338_INTRON_3_386 intron 30.661837 129.084283 30.661837 99.422446 65.0421415 1.813194832 0.244673 15 73 SH5810 5810 snR35 snR35 236 253 37.751453 108.741372 73.2464125 1.864786358 0.244578 124 86 SH16839 16839 YGL178W_7_167356_170575_INTRON_4_643 intron 27.873787 118.096423 27.873787 91.222636 59.5482115 1.774868722 0.244546 39 18 SH2480 2480 Phe5 3' flank 47.063114 120.088723 83.5759185 1.922081158 0.244525 102 23 SH20285 20285 YDR471W spliced 31.165253 100.296114 65.7306835 1.817768148 0.244499 180 98 SH15916 15916 YDL083C_4_307788_306925_INTRON_25_456 intron 26.698463 110.416667 26.698463 84.718204 55.7083335 1.745920167 0.244417 117 39 SH8883 8883 LSR1 / U2 RNA U2 1056 1070 38.7785 109.96131 74.369905 1.871397227 0.244386 209 52 SH4617 4617 snR3 snR3 1 19 48.213191 121.486223 84.849707 1.928650347 0.244281 49 67 SH18200 18200 YML024W_13_225889_226697_INTRON_4_401 intron 25.425964 101.309069 25.425964 76.883105 51.1545345 1.708884137 0.244079 95 82 SH8980 8980 snR17a / U3a U3a 186 202 30.310763 98.847783 64.579273 1.810093152 0.244061 156 50 SH11261 11261 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3191 3204 108.747474 195.275121 152.0112975 2.181875866 0.244035 24 67 SH4944 4944 snR9 snR9 126 140 122.34683 211.959003 167.1529165 2.223113959 0.243984 111 78 SH11579 11579 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4781 4798 63.732623 140.176006 101.9543145 2.008405609 0.243943 131 35 SH4849 4849 snR8 snR8 26 42 60.631977 136.496862 98.5644195 1.993720168 0.243938 135 70 SH1337 1337 Ile3 tRNA-intron 66 82 32.7021 102.675207 67.6886535 1.830515875 0.243904 188 85 SH12032 12032 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS/3'flank 7046 7069 24.673772 72.466102 48.569937 1.68636754 0.243819 198 36 SH16247 16247 YDR381W_4_1236547_1237993_INTRON_286_1051 3' exon 26.546291 109.37263 26.546291 83.826339 55.186315 1.741831396 0.243812 186 63 SH11021 11021 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1991 2004 48094.52834 36875.57657 42485.05246 4.628236159 0.243697 28 20 SH6387 6387 snR43 snR43 176 193 27.425598 89.385311 58.4054545 1.766453408 0.243487 200 36 SH12391 12391 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.885353 123.392413 28.885353 95.50706 62.1962065 1.793763897 0.243474 126 15 SH2499 2499 Pro1 5' flank - tRNA2 2 360.145821 496.336691 428.241256 2.631688504 0.24345 157 2 SH916 916 Glu3 3' flank 26.708435 84.875915 55.792175 1.746573292 0.243318 39 45 SH10179 10179 RUF6 RUF6 741 757 28.431992 93.640194 61.036093 1.785586726 0.24315 93 102 SH4411 4411 telomerase RNA telomerase 1091 1109 23.861534 68.027685 45.9446095 1.662234565 0.243058 206 90 SH6447 6447 snR45 snR45 81 98 913.689638 1120.754449 1017.222044 3.007415763 0.242965 126 29 SH9054 9054 snR17a / U3a 3' 28.779365 95.103129 61.941247 1.791979944 0.242954 143 66 SH21111 21111 YNL069C spliced 30.640838 99.479393 65.0601155 1.81331483 0.242908 127 104 SH4507 4507 U3b (snR17b) U3b 91 108 43.608639 115.981821 79.79523 1.901976931 0.242739 9 93 SH15173 15173 MT COX3 5' 26.63286 110.096006 26.63286 84.463146 55.548003 1.74466845 0.242656 49 69 SH9971 9971 RUF5-1 RUF5-1 661 677 171.149211 270.742817 220.946014 2.344286171 0.242581 72 69 SH15300 15300 MT 9S rRNA 3' 27.574255 116.70515 27.574255 90.130895 58.852575 1.769765469 0.242488 70 24 SH11777 11777 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5771 5786 113.852845 201.761296 157.8070705 2.198126458 0.24248 188 83 SH4133 4133 SRP RNA SRP RNA 556 568 71.891145 150.19031 111.0407275 2.045482298 0.242475 192 43 SH11341 11341 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3591 3608 47861.36529 36747.73449 42304.54989 4.626387079 0.242466 149 80 SH12297 12297 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.423687 101.423089 25.423687 76.999402 51.2115445 1.709367874 0.242461 134 20 SH12225 12225 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.27063 107.519774 26.27063 82.249144 54.259887 1.734478885 0.242382 42 94 SH17224 17224 YHR041C_8_189855_189122_INTRON_15_115 3' exon 125.005622 339.387407 125.005622 215.381785 170.1937035 2.230943489 0.242377 2 103 SH11029 11029 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2031 2046 46959.51017 36143.17463 41551.3424 4.618585059 0.242243 186 85 SH7379 7379 snR68 snR68 116 133 28.723873 94.929841 61.826857 1.791177169 0.24217 212 20 SH4847 4847 snR8 snR8 16 32 26.943861 86.454483 56.699172 1.753576717 0.242124 64 43 SH13754 13754 MT COB Exon1 28.800633 123.05731 28.800633 95.256677 62.028655 1.792592364 0.242088 153 67 SH8768 8768 LSR1 / U2 RNA U2 481 493 185.682987 288.278342 236.9806645 2.374712913 0.241968 41 94 SH17585 17585 YJL191W_10_73786_74610_INTRON_11_418 intron 27.125778 113.755256 27.125778 87.629478 57.377628 1.75874259 0.241822 113 11 SH16177 16177 YDR305C_4_1073479_1072737_INTRON_88_176 intron 56.834414 187.913596 56.834414 132.079182 94.456798 1.975233219 0.24177 188 69 SH12599 12599 MT_15S MT_15S 31.596141 131.773893 31.596141 101.177752 66.3869465 1.822082694 0.241763 193 57 SH5645 5645 snR34 snR34 146 165 25.890028 79.939157 52.9145925 1.723575456 0.241719 16 73 SH6211 6211 snR40 3' 25.018091 74.606808 49.8124495 1.697337898 0.241603 69 34 SH9875 9875 RUF5-1 RUF5-1 181 197 26.654569 84.696931 55.67575 1.745666076 0.241518 14 60 SH6354 6354 snR43 snR43 11 27 26.4955 83.712917 55.1042085 1.741184769 0.241472 182 40 SH5175 5175 snR13 snR13 31 47 41.088807 112.969686 77.0292465 1.88665565 0.241471 176 49 SH5453 5453 snR32 5' 26.894869 86.214265 56.554567 1.752467682 0.241359 179 32 SH11845 11845 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6111 6128 639.919011 819.540023 729.729517 2.863161913 0.241324 41 74 SH6103 6103 snR37 3' 254.204486 370.198958 312.201722 2.494435294 0.241262 208 40 SH15552 15552 YBR078W_2_393082_394818_INTRON_59_388 3' exon 26.709362 110.772864 26.709362 85.063502 55.886432 1.747306384 0.241232 59 11 SH2706 2706 Pro5 5' flank 31.725495 101.429601 66.577548 1.823327796 0.241171 2 15 SH7133 7133 snR63 snR63 171 188 27.23627 88.393563 57.8149165 1.762039903 0.241127 180 14 SH21404 21404 Pro8 spliced 80.643691 161.005252 120.8244715 2.082154904 0.241082 211 37 SH2261 2261 Phe2 5' flank 26.203121 81.949815 54.076468 1.733008318 0.241019 184 63 SH119 119 Arg1 5' flank 44.203847 116.826329 80.515088 1.905877272 0.24096 73 23 SH5481 5481 snR32 snR32 66 82 59.195094 134.979695 97.0873945 1.987162846 0.240944 69 28 SH11720 11720 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5486 5499 163.07507 261.305962 212.190516 2.326725969 0.240898 51 100 SH10963 10963 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1701 1718 538.016528 704.347019 621.1817735 2.793218704 0.240846 115 88 SH15358 15358 YBL026W_2_170585_171000_INTRON_55_182 intron 26.887968 112.107323 26.887968 86.219355 56.5536615 1.752460728 0.240811 202 7 SH13562 13562 MT COX1 Exon 6 28.498648 121.590413 28.498648 94.091765 61.2952065 1.787426512 0.240791 54 54 SH1156 1156 His1 tRNA 1 17 265.42231 383.702143 324.5622265 2.511297974 0.24076 61 42 SH15260 15260 MT 9S rRNA 5' / 9S 26.844854 111.818135 26.844854 85.973281 56.4090675 1.75134892 0.240531 129 12 SH7824 7824 snoRNA cluster1 intergenic 25.50789 102.179741 25.50789 77.671851 51.5898705 1.712564438 0.24053 49 60 SH2391 2391 Phe4 tRNA 6 22 429.64063 579.375778 504.508204 2.702868233 0.240404 214 87 SH8316 8316 snoRNA cluster4 intergenic 28.426409 121.257384 28.426409 93.830975 61.128692 1.786245103 0.24024 7 98 SH16507 16507 YER117W_5_396765_397649_INTRON_43_513 intron 24.498459 95.247091 24.498459 71.748632 48.1235455 1.682357616 0.240174 81 73 SH10941 10941 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1591 1607 228.092505 339.35451 283.7235075 2.45289532 0.240035 93 25 SH14020 14020 MT COB Exon4 26.676999 110.657914 26.676999 84.980915 55.828957 1.746859514 0.239863 36 13 SH770 770 Gln4 3' flank 244.723321 359.19521 301.9592655 2.47994836 0.239858 62 93 SH11498 11498 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4376 4391 55.764714 130.936996 93.350855 1.9701183 0.23979 11 60 SH11138 11138 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2576 2591 36271.90123 28844.75688 32558.32905 4.512662108 0.239724 170 6 SH6597 6597 snR47 91-99 + 3' 91 45.757612 118.811189 82.2844005 1.915317509 0.23965 54 21 SH1585 1585 Leu4 tRNA 96 112 72.818499 151.560077 112.189288 2.049951392 0.239608 100 14 SH16512 16512 YER117W_5_396765_397649_INTRON_43_513 intron 26.270616 107.758201 26.270616 82.487585 54.3791005 1.73543202 0.239559 170 29 SH18640 18640 YNL096C_14_444312_443395_INTRON_145_489 3' exon 26.875627 112.129703 26.875627 86.254076 56.5648515 1.752546651 0.239541 13 39 SH9549 9549 RUF3 RUF3 131 148 27.352043 89.284103 58.318073 1.765803165 0.23946 195 84 SH8571 8571 snR19 / U1 RNA U1 351 367 28.334138 93.513467 60.9238025 1.784787002 0.239322 24 37 SH8879 8879 LSR1 / U2 RNA U2 1036 1048 317.115845 446.17037 381.6431075 2.581657423 0.239188 49 88 SH8618 8618 snR19 / U1 RNA U1 586 601 28.350033 93.593568 60.9718005 1.78512902 0.239135 122 25 SH10485 10485 RUF8 RUF8 351 370 69.846362 147.945692 108.896027 2.037012035 0.239134 8 92 SH9999 9999 RUF5-1 3' 26.707722 85.243441 55.9755815 1.747998614 0.239055 110 7 SH15685 15685 YBR191W_2_606228_607098_INTRON_12_399 intron 168.706612 436.119775 168.706612 268.413163 218.5598875 2.339570458 0.238939 67 3 SH10856 10856 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1166 1179 143.955398 238.718505 191.3369515 2.28179885 0.238815 212 61 SH14003 14003 MT COB intronic 24.185396 93.297178 24.185396 70.111782 47.148589 1.6734687 0.238685 161 101 SH20621 20621 YHR101C spliced 25.878882 80.124257 53.0015695 1.72428873 0.238677 119 72 SH1876 1876 Leu9 3' flank 27.397939 89.672622 58.5352805 1.767417704 0.238431 140 59 SH13688 13688 MT ORF 5 (hypothetical) ORF5 27.789992 118.103473 27.789992 91.313481 59.5517365 1.77489443 0.238428 19 27 SH6300 6300 snR42 snR42 281 297 36.4215 107.480374 71.950937 1.857036454 0.238209 180 50 SH10882 10882 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1296 1313 19676.66323 16857.46431 18267.06377 4.261668745 0.238135 132 46 SH8747 8747 LSR1 / U2 RNA U2 376 390 41.294795 113.423235 77.359015 1.888510931 0.237998 70 12 SH503 503 Asp2 3' flank 27.172696 88.285558 57.729127 1.76139499 0.237854 117 59 SH17320 17320 YIL004C_9_348502_347943_INTRON_12_142 5' exon 45.916489 164.043109 45.916489 119.12662 82.5215545 1.9165674 0.23763 73 38 SH6612 6612 snR47 3' 25.391722 77.194213 51.2929675 1.710057825 0.237618 107 32 SH4244 4244 telomerase RNA telomerase 256 270 42.731789 115.213468 78.9726285 1.897476593 0.237588 124 19 SH8755 8755 LSR1 / U2 RNA U2 416 433 28.506505 94.364073 61.435289 1.788417906 0.237552 171 33 SH10892 10892 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1346 1361 47800.01942 36824.39884 42312.20913 4.626465701 0.237535 204 89 SH16112 16112 YDR064W_4_579453_580447_INTRON_22_560 intron 26.491162 109.52728 26.491162 84.036118 55.26364 1.742439487 0.237404 40 92 SH1119 1119 Gly4 71-72 + 3' flank 71 25.541466 78.134893 51.8381795 1.714649741 0.237386 163 97 SH8405 8405 snoRNA cluster 5 snR190 27.826822 118.371189 27.826822 91.544367 59.6855945 1.775869524 0.237343 81 77 SH6866 6866 snR56 5' 35.312372 106.179124 70.745748 1.849700343 0.237246 120 82 SH10983 10983 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1801 1821 169.121485 269.215693 219.168589 2.340778312 0.237081 121 4 SH10749 10749 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 631 646 28.838685 95.799043 62.318864 1.794619528 0.236979 109 18 SH2336 2336 Phe3 tRNA 6 22 398.379589 543.891602 471.1355955 2.673145918 0.236902 71 89 SH12738 12738 MT COX1 COX1ai1 28.455151 121.669616 28.455151 94.214465 61.334808 1.78770701 0.236669 132 52 SH7762 7762 snoRNA cluster1 snR76 42.392177 156.248307 42.392177 114.85613 78.6241535 1.895555983 0.236597 118 39 SH14952 14952 MT tRNA Met tRNA 27.591688 117.222194 27.591688 90.630506 59.111097 1.771669019 0.23646 190 94 SH6590 6590 snR47 snR47 56 75 576.329519 750.156453 663.242986 2.821672666 0.236371 53 3 SH11467 11467 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4221 4238 809.591986 1011.41135 910.501668 2.959280746 0.236261 9 30 SH10553 10553 RUF8 RUF8 691 708 25.776205 79.695055 52.73563 1.722104139 0.23614 177 64 SH19786 19786 Negative Control 182.9802 286.072245 234.5262225 2.370191408 0.236059 189 91 SH8547 8547 snR19 / U1 RNA U1 231 247 140.329053 234.750018 187.5395355 2.273092836 0.23595 144 15 SH14732 14732 MT tRNA cys; tRNA his tRNA his 31.048282 130.60168 31.048282 100.553398 65.80084 1.818231438 0.235907 147 89 SH8395 8395 snoRNA cluster 5 snR190 132.529081 356.882771 132.529081 225.35369 178.9413855 2.252710796 0.235856 134 102 SH5173 5173 snR13 snR13 21 38 153.062376 250.095885 201.5791305 2.304445568 0.23584 53 33 SH16702 16702 YGL031C_7_438393_437938_INTRON_1_456 intron 28.2512 120.678637 28.2512 93.427437 60.8393185 1.784184341 0.235773 152 43 SH18438 18438 YMR142C_13_551206_550205_INTRON_5_406 intron 48.370246 169.588138 48.370246 122.217892 85.294069 1.930918833 0.235744 122 8 SH11525 11525 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4511 4531 72.226041 151.161432 111.6937365 2.04802882 0.235697 94 11 SH13955 13955 MT COB Cytbi3 26.198226 107.572507 26.198226 82.374281 54.2862535 1.73468987 0.235627 16 41 SH10948 10948 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1626 1644 46.678335 120.172334 83.4253345 1.921297957 0.235602 37 71 SH18563 18563 YMR292W_13_854795_855293_INTRON_23_104 3' exon 27.633628 117.500929 27.633628 90.867301 59.2504645 1.772691759 0.235581 93 48 SH10566 10566 RUF8 RUF8 756 771 38.092176 109.626732 73.859454 1.868406093 0.235575 121 63 SH14566 14566 MT 21S rRNA 21S rRNA3 32.180351 133.61743 32.180351 102.437079 67.308715 1.828071299 0.235565 158 86 SH3672 3672 Val2 3' flank 36.000404 107.109076 71.55474 1.854638408 0.235488 119 61 SH4409 4409 telomerase RNA telomerase 1081 1100 26.129972 81.970838 54.050405 1.732798952 0.235428 95 42 SH4082 4082 SRP RNA SRP RNA 301 316 35.886188 106.975935 71.4310615 1.853887104 0.235353 194 25 SH14397 14397 MT 21S rRNA 21S rRNA3 28.305366 121.002513 28.305366 93.697147 61.0012565 1.785338781 0.235185 80 25 SH289 289 Arg4 41-53 41 53 516.749049 682.574111 599.66158 2.777906225 0.234993 32 23 SH10823 10823 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1001 1021 42.280823 114.814499 78.547661 1.895133257 0.234956 80 12 SH6351 6351 snR43 5' - 12 -4 12 27.819469 91.691045 59.755257 1.776376119 0.234877 146 5 SH16846 16846 YGL178W_7_167356_170575_INTRON_4_643 3' exon 34.771189 139.427982 34.771189 105.656793 70.213991 1.846423659 0.234826 139 66 SH13824 13824 MT COB Cytbi2 28.953221 124.399314 28.953221 96.446093 62.699657 1.797265165 0.234785 186 79 SH11768 11768 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5726 5744 31.994945 102.232825 67.113885 1.826812379 0.234781 117 37 SH12105 12105 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7411 7426 622.850651 803.774062 713.3123565 2.853279747 0.234752 201 73 SH2910 2910 Pro8 tRNA 71 83 290.698449 415.610585 353.154517 2.547964765 0.234674 73 24 SH8260 8260 snoRNA cluster4 5'/snR67 26.060887 106.676793 26.060887 81.615906 53.8383965 1.731092117 0.234568 59 81 SH11859 11859 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6181 6197 37205.33992 29598.13191 33401.73591 4.523769038 0.234466 35 39 SH8416 8416 snoRNA cluster 5 snR190 55.731457 186.003305 55.731457 131.271848 93.5016525 1.970819286 0.234332 83 99 SH11077 11077 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2271 2286 1880.175639 2147.990614 2014.083127 3.304077391 0.234309 168 91 SH18479 18479 YMR143W_13_551927_552902_INTRON_25_568 intron/exon 25.621894 103.513075 25.621894 78.891181 52.2565375 1.71814063 0.234245 151 63 SH229 229 Arg3 1-13 1 13 31.227514 100.95184 66.089677 1.820133629 0.234221 202 4 SH12327 12327 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.256952 108.116182 26.256952 82.85923 54.558091 1.736859166 0.234183 168 21 SH8724 8724 LSR1 / U2 RNA U2 261 277 65.373465 142.94607 104.1597675 2.017700002 0.234051 184 4 SH9103 9103 snR14 / U4 RNA U4 131 148 39.791242 111.762563 75.7769025 1.879536849 0.23401 67 26 SH1405 1405 Leu1 tRNA 96 113 63.292893 140.393138 101.8430155 2.00793125 0.233996 86 19 SH5887 5887 snR35 3' 57.853997 133.843327 95.848662 1.981586055 0.233892 96 26 SH21650 21650 copy of SH8770 174.906886 276.680593 225.7937395 2.353711896 0.233884 210 103 SH10802 10802 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 896 909 1178.33895 1414.433329 1296.38614 3.112734379 0.233878 126 49 SH8414 8414 snoRNA cluster 5 snR190 57.214296 189.294181 57.214296 133.079885 95.1470905 1.978395513 0.23387 45 12 SH10850 10850 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1136 1156 66.447216 144.269262 105.358239 2.022668503 0.233868 124 35 SH7549 7549 snR79 3' 27.63881 91.014323 59.3265665 1.773249214 0.233823 64 14 SH1974 1974 Lys2 71-73 + 3' flank 71 88 28.169428 93.22993 60.699679 1.783186394 0.233801 51 75 SH12403 12403 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.708525 129.788157 30.708525 100.079632 65.3940785 1.815538424 0.233785 27 96 SH12213 12213 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.80235 130.052453 30.80235 100.250103 65.5262265 1.816415159 0.233634 74 48 SH2450 2450 Phe5 tRNA 21 33 31.571959 101.574745 66.573352 1.823300424 0.233619 174 7 SH21528 21528 copy of SH3563 26.239201 82.805036 54.5221185 1.736572722 0.233529 59 80 SH18888 18888 YOL047C_15_242745_241612_INTRON_244_306 3' exon 144.272159 383.139443 144.272159 239.867284 192.0697215 2.283458907 0.233445 119 4 SH10906 10906 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1416 1434 43580.59371 34040.49953 38810.54662 4.58894976 0.23341 208 32 SH8716 8716 LSR1 / U2 RNA U2 221 238 26.000033 81.331485 53.665759 1.729697276 0.233395 135 77 SH10965 10965 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1711 1729 25.765895 79.860039 52.812967 1.722740567 0.233392 101 29 SH1004 1004 Gly2 tRNA 11 30 27.645996 91.087771 59.3668835 1.773544251 0.233214 30 33 SH10347 10347 RUF7 RUF7 346 362 27.101116 88.250757 57.6759365 1.760994655 0.233198 173 61 SH3131 3131 Ser4 tRNA 61 77 62.906587 139.996423 101.451505 2.006258494 0.233187 172 57 SH11575 11575 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4761 4778 42.974255 115.764952 79.3696035 1.899654211 0.233178 97 83 SH21520 21520 copy of SH3381 26.343343 83.486737 54.91504 1.739691304 0.233106 47 63 SH19072 19072 YOR293W_15_867094_867848_INTRON_53_489 intron 26.592574 110.637057 26.592574 85.044483 55.8185285 1.746778383 0.233077 66 87 SH12500 12500 MT_tRNA Pro tRNA 27.857137 118.835639 27.857137 91.978502 59.9178195 1.777556 0.233067 175 45 SH7788 7788 snoRNA cluster1 intergenic/snR75 49.016699 171.203198 49.016699 123.186499 86.101599 1.935011217 0.233067 115 71 SH10574 10574 RUF8 RUF8 796 810 35.126768 106.175002 70.650885 1.849117606 0.23302 31 35 SH9753 9753 RUF4 RUF4 541 553 559.859597 732.984825 646.422211 2.81051627 0.232984 35 37 SH21904 21904 copy of SH19399 26.877369 86.865739 56.871554 1.754895095 0.232777 53 26 SH6926 6926 snR58 5' - 1 -9 10 28.664125 95.394738 62.0294315 1.792597801 0.232589 203 6 SH13046 13046 MT COX1 COX1ai2 26.260764 108.291094 26.260764 83.03033 54.645547 1.737554778 0.23245 18 72 SH605 605 Gln1 66-72 + 3' flank 66 3' flank 38.46458 110.238868 74.351724 1.871291043 0.23239 207 97 SH7801 7801 snoRNA cluster1 snR75 28.081123 120.055999 28.081123 92.974876 60.5279995 1.78195632 0.232235 27 92 SH18955 18955 YOL127W_15_80347_81189_INTRON_14_427 intron 71.279548 220.581076 71.279548 150.301528 110.790538 2.044502671 0.232024 9 83 SH21559 21559 copy of SH4989 24.498245 72.340399 48.419322 1.685018704 0.232016 161 26 SH5755 5755 snR35 5' 33.096224 103.757796 68.42701 1.835227563 0.231999 20 60 SH10691 10691 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 341 359 32.169947 102.604435 67.387191 1.828577353 0.231925 35 81 SH15535 15535 YBR078W_2_393082_394818_INTRON_59_388 intron 25.702727 104.294917 25.702727 79.59219 52.6474585 1.721377411 0.231867 121 18 SH4262 4262 telomerase RNA telomerase 346 363 28.330518 94.048631 61.1895745 1.786677433 0.231844 168 54 SH18956 18956 YOL127W_15_80347_81189_INTRON_14_427 intron 38.877258 148.632956 38.877258 110.755698 74.816478 1.87399726 0.23182 13 46 SH660 660 Gln2 3' flank 25.359982 77.47074 51.415361 1.711092889 0.231787 153 22 SH8117 8117 snoRNA cluster 3; 5'/snR41 28.559095 122.586216 28.559095 95.027121 61.793108 1.790940039 0.231597 194 28 SH15509 15509 YBR048W_2_332790_333771_INTRON_46_556 intron 26.392604 109.32039 26.392604 83.927786 55.160195 1.741625793 0.231539 155 37 SH21608 21608 copy of SH6884 29.112716 97.369254 63.240985 1.800998626 0.231493 40 39 SH2740 2740 Pro5 tRNA 81 95 45.920189 119.504215 82.712202 1.917569583 0.231486 84 23 SH483 483 Asp2 5' flank 80.323301 161.483939 120.90362 2.082439304 0.231407 11 68 SH4741 4741 snR4 3' 66.13912 144.088321 105.1137205 2.021659408 0.231379 56 90 SH11830 11830 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6036 6051 40986.22836 32299.24945 36642.7389 4.563987928 0.231122 204 98 SH20806 20806 YKL180W spliced 29.611529 98.302884 63.9572065 1.805889487 0.231101 208 55 SH8714 8714 LSR1 / U2 RNA U2 211 226 26.222633 82.912224 54.5674285 1.736933488 0.231061 204 100 SH3777 3777 Val4 3' flank 27.673084 91.355201 59.5141425 1.774620181 0.231055 54 4 SH21699 21699 copy of SH10874 2179.446667 2453.329765 2316.388216 3.364811347 0.230915 146 77 SH11182 11182 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2796 2811 28.276633 93.891862 61.0842475 1.785929228 0.230903 212 15 SH11280 11280 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3286 3305 65.097546 142.859694 103.97862 2.016944049 0.230791 119 100 SH9517 9517 RUF3 5' 27.248797 89.427545 58.338171 1.765952809 0.23067 44 51 SH6533 6533 snR46 snR46 156 172 28.867236 96.400277 62.6337565 1.79680846 0.230599 130 10 SH2857 2857 Pro7 tRNA 91 103 75.19639 155.212444 115.204417 2.06146913 0.230509 4 47 SH5243 5243 snR30 snR30 66 83 26.335083 83.658527 54.996805 1.74033746 0.230503 75 35 SH3932 3932 RNase MRP RNaseMRP 76 92 33.520835 104.357951 68.939393 1.838467455 0.230486 32 44 SH10306 10306 RUF7 RUF7 141 155 653.349595 840.559241 746.954418 2.8732941 0.230438 15 49 SH10926 10926 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1516 1533 339.877356 476.216039 408.0466975 2.610709867 0.23026 183 68 SH3402 3402 Thr4 3' flank 25.84282 80.612949 53.2278845 1.726139206 0.230174 154 53 SH11401 11401 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3891 3904 45.468096 119.031795 82.2499455 1.915135619 0.230163 182 98 SH11359 11359 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3681 3698 4219.767816 4384.034245 4301.901031 3.633660415 0.230135 74 95 SH11265 11265 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3211 3229 26.359042 83.840997 55.1000195 1.741151753 0.230117 133 29 SH8991 8991 snR17a / U3a U3a 241 257 31.956302 102.421288 67.188795 1.827296852 0.230101 176 60 SH8568 8568 snR19 / U1 RNA U1 336 352 38.561177 110.477235 74.519206 1.872268219 0.230089 34 30 SH16540 16540 YER131W_5_423587_424307_INTRON_1_361 3' exon 115.122302 318.92998 115.122302 204.807678 159.96499 2.204024943 0.230019 98 30 SH8272 8272 snoRNA cluster4 snR67 38.29866 147.473177 38.29866 110.174517 74.2365885 1.870618006 0.229943 152 86 SH3984 3984 RNase MRP 336-340 + 3' 336 27.835442 92.11344 59.974441 1.777966209 0.229943 93 98 SH21037 21037 YMR125W spliced 57.399498 133.582286 95.490892 1.97996195 0.229834 20 66 SH10210 10210 RUF6 RUF6 896 908 173.698364 275.920514 224.809439 2.351814542 0.229798 95 89 SH18706 18706 YNL130C_14_381156_379555_INTRON_30_470 intron 44.945827 162.362603 44.945827 118.416776 81.6813015 1.912122649 0.22971 58 93 SH3192 3192 Ser5 81-82 + 3' flank 81 26.665325 85.798885 56.232105 1.749984341 0.229689 107 17 SH21840 21840 copy of SH17170 27.354298 90.127124 58.740711 1.768939199 0.22964 65 16 SH4227 4227 telomerase RNA telomerase 171 186 29.504762 98.195807 63.8502845 1.805162837 0.229537 29 48 SH20586 20586 YHR021C spliced 26.776315 86.525543 56.650929 1.753207036 0.229405 69 103 SH4855 4855 snR8 snR8 56 72 987.730288 1211.934197 1099.832243 3.041326447 0.229254 50 46 SH7180 7180 snR64 5' 285.686469 410.993067 348.339768 2.542003058 0.229183 109 27 SH6290 6290 snR42 snR42 231 248 26.849213 87.009655 56.929434 1.755336866 0.229161 65 31 SH4143 4143 SRP RNA SRP RNA 606 620 70.607118 149.710553 110.1588355 2.042019336 0.229095 109 85 SH12664 12664 MT_15S MT_15S 153.43801 404.0177 153.43801 251.57969 202.50885 2.306444007 0.229033 99 52 SH13934 13934 MT COB Cytbi3 26.108652 107.491554 26.108652 82.382902 54.245777 1.734365934 0.228981 104 33 SH10998 10998 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1876 1893 36461.234 29180.76565 32820.99982 4.516151807 0.228979 178 62 SH19378 19378 YPR043W_16_654161_654842_INTRON_3_405 intron 32.267263 134.142118 32.267263 102.874855 67.571059 1.829760725 0.228949 175 6 SH19323 19323 YPL218W_16_138697_139408_INTRON_29_167 5' exon 107.126305 301.102103 107.126305 194.975798 151.0510515 2.179123753 0.228943 33 35 SH2416 2416 Phe4 3' flank 39.562214 111.760475 75.6613445 1.878874054 0.228864 63 67 SH9279 9279 RUF1 5' 34.096848 105.154197 69.6255225 1.842768467 0.228687 144 51 SH12573 12573 MT_15S MT_15S 26.418315 109.756497 26.418315 84.338182 55.3782485 1.743339216 0.228645 103 37 SH11482 11482 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4296 4309 1161.569621 1401.242624 1281.406123 3.107686795 0.228608 62 80 SH3338 3338 Thr3 tRNA 36 52 157.050784 256.03882 206.544802 2.31501427 0.228431 32 90 SH3280 3280 Thr2 tRNA 1 13 30.45093 99.917591 65.1842605 1.814142743 0.228401 120 18 SH13112 13112 MT COX1 COX1ai3 28.301888 121.484512 28.301888 94.182624 61.242256 1.787051181 0.2284 45 103 SH3912 3912 RNase MRP 5' 26.555652 85.221801 55.8887265 1.747324214 0.228393 53 100 SH19572 19572 AEP2/ATP13 0.6 25.964619 81.53489 53.7497545 1.730376485 0.228377 149 30 SH20286 20286 YDR471W spliced 31.982665 102.544948 67.2638065 1.827781441 0.228354 21 58 SH18663 18663 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.079488 120.334923 28.079488 93.255435 60.6674615 1.782955823 0.228301 198 60 SH17811 17811 YKR057W_11_551293_551878_INTRON_25_346 intron 28.622054 123.164025 28.622054 95.541971 62.0820125 1.792965787 0.228257 165 67 SH8064 8064 snoRNA cluster 2 snR61 38.426721 147.845992 38.426721 110.419271 74.422996 1.871707149 0.22822 140 104 SH5494 5494 snR32 snR32 131 143 29.974927 99.098484 64.5367055 1.809806792 0.228131 156 37 SH16835 16835 YGL178W_7_167356_170575_INTRON_4_643 intron 34.145196 138.392056 34.145196 105.24686 69.696028 1.843208028 0.228023 107 103 SH20385 20385 YFL034C-B spliced 29.394996 98.080935 63.7379655 1.804398197 0.228009 61 2 SH20743 20743 YJL205C-A spliced 27.382577 90.361322 58.8719495 1.769908417 0.227997 181 22 SH18670 18670 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.409672 126.523158 29.409672 98.113486 63.761579 1.804559063 0.227884 183 51 SH335 335 Arg5 tRNA 11 25 103.467213 190.567808 147.0175105 2.167369064 0.227832 88 21 SH2249 2249 Phe1 3' flank 42.085215 114.986938 78.5360765 1.895069201 0.22781 202 48 SH3383 3383 Thr4 tRNA 1 15 33.32881 104.25655 68.79268 1.837542229 0.227803 201 99 SH8718 8718 LSR1 / U2 RNA U2 231 247 37.049231 108.793635 72.921433 1.862855195 0.227785 32 4 SH17003 17003 YGR118W_7_726968_727725_INTRON_66_385 3' exon 28.78864 124.075986 28.78864 96.287346 62.537993 1.79614394 0.227701 177 95 SH21756 21756 copy of SH13181 141.849134 237.761437 189.8052855 2.278308302 0.227675 30 100 SH21205 21205 YOL127W spliced 90.55338 174.468719 132.5110495 2.122252094 0.22766 171 76 SH20521 20521 YGR034W spliced 27.240411 89.660027 58.450219 1.766786143 0.227551 105 102 SH7311 7311 snR66 snR66 46 63 102.323592 189.177593 145.7505925 2.163610329 0.227492 186 19 SH4928 4928 snR9 snR9 46 63 26.66961 86.022351 56.3459805 1.750862941 0.227461 186 3 SH1658 1658 Leu5 3' flank 28.82696 96.475653 62.6513065 1.796930132 0.227354 72 60 SH12349 12349 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.575575 129.770528 30.575575 100.194953 65.385264 1.815479882 0.22727 27 39 SH21256 21256 YPL075W spliced 29.390945 98.125895 63.75842 1.804537546 0.227008 30 79 SH1265 1265 Ile2 tRNA 21 37 34.31261 105.503276 69.907943 1.844526523 0.226986 49 95 SH5851 5851 snR35 snR35 441 457 532.064889 703.864135 617.964512 2.790963535 0.226945 214 50 SH18651 18651 YNL112W_14_413636_416278_INTRON_1274_2275 intron 26.331238 109.282852 26.331238 83.951614 55.141426 1.741477993 0.226815 119 22 SH10324 10324 RUF7 RUF7 231 247 29.90016 99.041151 64.4706555 1.809362086 0.22672 179 68 SH235 235 Arg3 31-43 31 43 42.239454 115.241969 78.7407115 1.896199335 0.226691 87 14 SH9476 9476 RUF2 RUF2 221 237 33.696155 104.767996 69.2320755 1.840307351 0.226638 180 57 SH12732 12732 MT COX1 Exon1 328.223092 790.455306 328.223092 463.232214 395.727653 2.597396399 0.226577 47 103 SH8180 8180 snoRNA cluster 3; snR70 28.659031 123.491208 28.659031 95.832177 62.245604 1.794108685 0.226472 164 9 SH18655 18655 YNL112W_14_413636_416278_INTRON_1274_2275 intron 47.581991 168.412053 47.581991 121.830062 84.7060265 1.92791431 0.226328 201 37 SH21726 21726 copy of SH11921 26.710225 86.384338 56.5472815 1.752411731 0.226275 81 53 SH12653 12653 MT_15S MT_15S 25.836932 105.746408 25.836932 80.909476 53.373204 1.727323274 0.226225 132 13 SH18904 18904 YOL120C_15_94401_93394_INTRON_113_559 intron 132.150911 357.348005 132.150911 226.197094 179.1740025 2.253274995 0.22613 19 28 SH11060 11060 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2186 2204 99.891196 186.280874 143.086035 2.155597249 0.226036 94 103 SH19992 19992 YBL092W spliced 31.270057 101.47019 66.3701235 1.821972626 0.225936 76 90 SH5930 5930 snR36 snR36 106 121 45.478312 119.30822 82.393266 1.915891718 0.225812 172 86 SH5598 5598 snR34 5' 32.207065 102.959257 67.583161 1.829838501 0.225727 26 49 SH19997 19997 YBR048W spliced 146.990228 244.256066 195.623147 2.291420241 0.225721 82 20 SH9223 9223 snR6 / U6 RNA 5' - 3 -14 3 25.928059 81.535925 53.731992 1.730232941 0.225646 178 69 SH1586 1586 Leu4 101-114 + 3' flank 101 30.094924 99.444245 64.7695845 1.811371111 0.22557 109 73 SH10737 10737 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 571 586 46.130437 120.121608 83.1260225 1.919737 0.225565 190 66 SH8195 8195 snoRNA cluster 3; intergenic 26.302981 109.186206 26.302981 83.883225 55.093103 1.741097234 0.225558 20 18 SH7718 7718 snoRNA cluster1 snR77 31.151538 131.437771 31.151538 101.286233 66.2188855 1.820981867 0.225552 186 72 SH10888 10888 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1326 1346 166.093831 267.438837 216.766334 2.335991833 0.225538 142 95 SH6561 6561 snR47 5' 26.035372 82.230238 54.132805 1.733460532 0.225419 70 7 SH7089 7089 snR63 5' 26.9495 87.993701 57.4716005 1.759453292 0.225322 145 34 SH4678 4678 snR4 5' 31.988388 102.709841 67.3491145 1.82833189 0.225177 25 66 SH6973 6973 snR60 5' 24.652761 73.727213 49.189987 1.691876708 0.225104 140 8 SH21344 21344 YPR098C spliced 410.485789 562.476853 486.481321 2.68706617 0.22504 43 43 SH8668 8668 LSR1 / U2 RNA 5' 26.857577 87.454875 57.156226 1.757063545 0.224781 14 33 SH133 133 Arg1 41-56 41 56 58.321124 135.077526 96.699325 1.985423443 0.224669 74 70 SH12324 12324 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.727071 105.079089 25.727071 80.352018 53.0395445 1.724599786 0.224612 63 10 SH2626 2626 Pro3 tRNA 81 95 41.510592 114.460949 77.9857705 1.892015367 0.224577 203 16 SH17848 17848 YKR094C_11_618384_617630_INTRON_9_376 intron/exon 27.486107 117.524745 27.486107 91.038638 59.2623725 1.772779034 0.224558 25 2 SH1561 1561 Leu4 5' flank 27.508462 91.136208 59.322335 1.773218237 0.224502 203 47 SH20280 20280 YDR450W spliced 26.665405 86.265861 56.465633 1.751784201 0.224404 62 31 SH12325 12325 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.538623 111.014204 26.538623 85.475581 56.007102 1.748243101 0.224269 26 36 SH11378 11378 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3776 3789 21333.30553 18264.87726 19799.0914 4.29664526 0.22422 140 45 SH3279 3279 Thr2 5' flank - tRNA10 10 32.230864 103.067901 67.6493825 1.830263837 0.224149 10 65 SH10497 10497 RUF8 RUF8 411 427 27.241912 89.984039 58.6129755 1.767993769 0.22414 201 95 SH16005 16005 YDL137W_4_216158_217074_INTRON_1_332 intron 112.454698 313.667132 112.454698 202.212434 157.333566 2.196821386 0.224087 97 103 SH21312 21312 YPL241C spliced 30.903552 100.935709 65.9196305 1.819014764 0.224079 9 20 SH10087 10087 RUF6 RUF6 281 298 25.764385 80.638484 53.2014345 1.725923343 0.224006 102 29 SH8209 8209 snoRNA cluster 3; snR51 25.519942 103.637503 25.519942 79.117561 52.3187515 1.718657372 0.223813 212 57 SH1685 1685 Leu6 5' flank - tRNA7 7 28.383287 94.868042 61.6256645 1.789761615 0.223785 158 45 SH8300 8300 snoRNA cluster4 intergenic 29.954401 128.256084 29.954401 99.301683 64.628042 1.810420999 0.223586 52 26 SH11960 11960 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6686 6699 543.375845 718.472567 630.924206 2.79997719 0.223581 65 94 SH13595 13595 MT ATP8/AAP1 5' 23.537504 90.132781 23.537504 67.595277 45.5663905 1.658644628 0.223555 63 99 SH16150 16150 YDR092W_4_629869_630598_INTRON_31_298 intron 60.846442 198.09039 60.846442 138.243948 99.545195 1.998020302 0.223529 112 94 SH10821 10821 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 991 1013 117.563947 208.62456 163.0942535 2.212438659 0.223459 141 44 SH7139 7139 snR63 snR63 201 218 57.769815 134.484518 96.1271665 1.982846141 0.223433 184 2 SH13630 13630 MT ATP6 ATP6 26.468717 110.594382 26.468717 85.125665 55.797191 1.746612336 0.223228 166 17 SH17700 17700 YKL081W_11_282533_284097_INTRON_206_531 5' exon 298.305381 725.201813 298.305381 427.896432 363.1009065 2.560027333 0.223213 195 7 SH15366 15366 YBL027W_2_168385_169338_INTRON_3_386 intron 26.484352 110.716062 26.484352 85.23171 55.858031 1.747085623 0.223142 115 99 SH18054 18054 YLR333C_12_796335_795573_INTRON_1_423 intron 26.993408 114.488101 26.993408 88.494693 57.7440505 1.761507245 0.222899 57 35 SH2627 2627 Pro3 tRNA 86 100 33.346196 104.526579 68.9363875 1.838448521 0.222879 178 8 SH10918 10918 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1476 1493 621.605522 808.6034 715.104461 2.854369487 0.222844 91 19 SH3408 3408 Thr4 3' flank 25.94597 81.894165 53.9200675 1.731750427 0.222788 49 63 SH12452 12452 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.964562 128.328249 29.964562 99.363687 64.6641245 1.810663402 0.222749 164 72 SH7000 7000 snR60 snR60 81 97 28.376508 94.916589 61.6465485 1.789908766 0.222748 146 39 SH21411 21411 Ser3 spliced 37.760837 109.926474 73.8436555 1.868313188 0.222639 76 70 SH20306 20306 YER003C spliced 63.005726 140.907382 101.956554 2.008415148 0.222553 135 61 SH6077 6077 snR37 snR37 301 313 469.95272 633.57419 551.763455 2.741752932 0.222495 89 22 SH15819 15819 YDL064W_4_337486_338069_INTRON_39_148 5' exon 28.172556 121.246748 28.172556 94.074192 61.123374 1.786207319 0.22249 113 8 SH6651 6651 snR48 snR48 81 102 27.476966 91.15037 59.313668 1.773154782 0.222459 199 57 SH4026 4026 SRP RNA SRP RNA 21 37 28.670507 96.185399 62.427953 1.795379095 0.222428 2 17 SH7668 7668 snoRNA cluster1 snR78 27.5986 118.27131 27.5986 91.67271 59.635655 1.775505994 0.222291 72 27 SH5231 5231 snR30 snR30 6 22 26.881379 87.831763 57.356571 1.75858318 0.222282 53 52 SH4699 4699 snR4 snR4 31 48 30.039651 99.533017 64.786334 1.811483406 0.222048 62 21 SH10072 10072 RUF6 RUF6 206 223 27.205888 89.94476 58.575324 1.7677147 0.222037 30 35 SH15718 15718 YBR255C-A_2_727032_726576_INTRON_64_157 5' exon 27.096209 115.337986 27.096209 89.241777 58.168993 1.764691546 0.221967 192 65 SH7436 7436 snR69 snR69 81 98 26.927318 88.159991 57.5436545 1.75999744 0.221909 79 72 SH3156 3156 Ser5 5' flank 25.848346 81.356174 53.60226 1.729183101 0.221814 214 48 SH82 82 Ala2 46-61 46 61 35.549823 107.273077 71.41145 1.853767851 0.221755 154 95 SH7939 7939 snoRNA cluster1 3' 27.521783 117.922635 27.521783 91.400852 59.4613175 1.774234528 0.221587 171 13 SH11019 11019 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1981 1998 247.485782 366.720204 307.102993 2.487284049 0.2215 36 22 SH17100 17100 YHL001W_8_104270_105084_INTRON_130_527 intron 26.78927 113.110277 26.78927 87.321007 57.0551385 1.756294764 0.221409 9 28 SH4457 4457 telomerase RNA 3' 25.884807 81.629439 53.757123 1.730436018 0.221329 104 11 SH6703 6703 snR49 snR49 41 57 169.74713 272.574989 221.1610595 2.344708662 0.221281 126 16 SH18871 18871 YNR053C_14_723108_721117_INTRON_811_1341 intron 27.058256 115.120274 27.058256 89.062018 58.060137 1.763878056 0.221255 52 85 SH9997 9997 RUF5-1 3' 78.23003 159.80106 119.015545 2.07560369 0.221233 140 67 SH21365 21365 Ile2_3 spliced 105.163353 193.416407 149.28988 2.174030369 0.221229 126 56 SH2301 2301 Phe2 3' flank 51.767082 127.305893 89.5364875 1.952000053 0.221223 38 77 SH3295 3295 Thr2 3' flank 25.286931 77.880919 51.583925 1.712514384 0.221173 83 6 SH2317 2317 Phe3 5' flank 31.576101 102.256012 66.9160565 1.825530339 0.221157 162 89 SH7541 7541 snR79 snR79 46 62 28.804231 96.849898 62.8270645 1.798146768 0.221149 194 92 SH2797 2797 Pro6 tRNA 76 90 30.016975 99.547387 64.782181 1.811455565 0.22102 9 88 SH19660 19660 SIR1 2.2 979.136764 1209.079075 1094.10792 3.039060162 0.220974 52 62 SH6008 6008 snR37 5' 25.033037 76.328562 50.6807995 1.704843457 0.220947 119 101 SH9562 9562 RUF3 RUF3 196 212 27.296104 90.501915 58.8990095 1.770107991 0.22092 181 75 SH3125 3125 Ser4 tRNA 31 46 31.77174 102.607964 67.189852 1.827303684 0.22087 103 103 SH959 959 Gly1 tRNA 46 58 29.831012 99.228783 64.5298975 1.809760975 0.220835 196 64 SH8741 8741 LSR1 / U2 RNA U2 346 362 26.889069 88.01611 57.4525895 1.759309608 0.220785 42 35 SH5570 5570 snR33 snR33 136 153 25.287858 77.921473 51.6046655 1.712688967 0.220746 95 80 SH6248 6248 snR42 snR42 21 37 187.905867 294.751609 241.328738 2.382609042 0.220746 126 81 SH11315 11315 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3461 3474 885.613608 1106.209115 995.9113615 2.998220687 0.22065 18 74 SH11484 11484 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4306 4321 247.246615 366.632972 306.9397935 2.487053197 0.220623 86 104 SH16608 16608 YFL034C-B_6_63992_63015_INTRON_21_134 intron 33.958738 138.359595 33.958738 105.400857 69.6797975 1.84310688 0.220524 101 96 SH18954 18954 YOL127W_15_80347_81189_INTRON_14_427 intron 34.000945 138.456281 34.000945 105.455336 69.7281405 1.843408084 0.22047 149 18 SH11994 11994 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6856 6869 80.368618 162.529759 121.4491885 2.084394617 0.22047 14 27 SH7148 7148 snR63 246-255 + 3' 246 31.16302 101.580911 66.3719655 1.821984679 0.220448 105 100 SH1924 1924 Lys1 3' flank 27.978262 93.418622 60.698442 1.783177544 0.220255 133 26 SH11089 11089 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2331 2346 154.716507 254.479319 204.597913 2.310901199 0.220199 84 92 SH1945 1945 Lys2 5' flank 23.831603 69.450678 46.6411405 1.668769162 0.220161 97 37 SH1827 1827 Leu8 3' flank 25.871714 81.667724 53.769719 1.730537767 0.219905 11 7 SH1083 1083 Gly3 3' flank 31.267055 101.790921 66.528988 1.823010917 0.219895 119 89 SH10611 10611 RUF8 3' 32.61273 103.761904 68.187317 1.833703602 0.219893 206 72 SH2494 2494 Pro1 5' flank 36.718648 108.815467 72.7670575 1.861934814 0.219827 26 33 SH3451 3451 Trp1 tRNA 86 101 29.266554 98.278909 63.7727315 1.804635019 0.219825 161 87 SH5032 5032 snR10 snR10 191 205 31.183935 101.653487 66.418711 1.822290443 0.219774 173 34 SH4841 4841 snR8 5' 241.796287 360.221943 301.009115 2.478579647 0.219714 102 103 SH16423 16423 YER074W_5_306319_307192_INTRON_4_469 5' exon 33.552774 137.504201 33.552774 104.951427 69.2521005 1.840432951 0.219536 125 78 SH6750 6750 snR50 5' 28.746559 96.732836 62.7396975 1.79754242 0.219462 171 85 SH20787 20787 YKL081W spliced 32.330604 103.434765 67.8826845 1.831759009 0.219325 163 20 SH19315 19315 YPL198W_16_173151_174701_INTRON_12_420 intron 40.979367 154.078437 40.979367 114.09907 77.5392185 1.88952142 0.219306 144 67 SH13069 13069 MT COX1 intronic / exon3 45.145576 163.446507 45.145576 119.300931 82.2232535 1.914994657 0.219174 66 21 SH9781 9781 RUF4 RUF4 681 697 93.936332 179.58831 136.762321 2.135966463 0.219097 90 50 SH18660 18660 YNL112W_14_413636_416278_INTRON_1274_2275 intron 25.868336 106.5869 25.868336 81.718564 53.79345 1.730729398 0.219058 59 85 SH14438 14438 MT 21S rRNA 21S rRNA3 184.331191 474.055974 184.331191 290.724783 237.527987 2.375714788 0.219022 160 30 SH9831 9831 RUF5-1 5' 253.065428 374.105621 313.5855245 2.496356007 0.218765 4 12 SH1385 1385 Leu1 5' flank - tRNA12 12 339.038194 478.74471 408.891452 2.611608032 0.218747 127 89 SH19773 19773 Negative Control 29.487758 98.733692 64.110725 1.806930688 0.218668 132 68 SH16983 16983 YGR118W_7_726968_727725_INTRON_66_385 5' exon 28.125095 121.287795 28.125095 94.1627 61.1438975 1.786353119 0.218576 45 80 SH7700 7700 snoRNA cluster1 intergenic 23.936103 93.083894 23.936103 70.147791 47.041947 1.672485288 0.21855 212 84 SH186 186 Arg2 46-62 46 62 38.591017 111.140836 74.8659265 1.874284204 0.218504 172 75 SH3552 3552 Tyr2 tRNA-exon/intron 31 50 34.177612 105.776279 69.9769455 1.844954982 0.21842 21 78 SH17669 17669 YKL006C-A_11_430270_429836_INTRON_37_177 intron 26.628136 112.192703 26.628136 86.564567 56.5963515 1.752788435 0.218362 184 10 SH16677 16677 YGL030W_7_439087_439634_INTRON_4_233 5' exon 30.462637 129.942375 30.462637 100.479738 65.4711875 1.816050218 0.218217 115 104 SH17936 17936 YLR093C_12_327416_326514_INTRON_17_157 intron 27.197756 116.444496 27.197756 90.24674 58.722248 1.768802673 0.218199 17 98 SH16079 16079 YDR025W_4_491510_492319_INTRON_46_384 intron 31.541723 132.904521 31.541723 102.362798 66.9522605 1.825765245 0.2181 101 80 SH8188 8188 snoRNA cluster 3; snR70/intergenic 25.986995 107.554819 25.986995 82.567824 54.2774095 1.734619112 0.217872 191 55 SH2415 2415 Phe4 3' flank 27.861214 93.107541 60.4843775 1.781643215 0.217753 186 39 SH6608 6608 snR47 3' 26.258214 84.291434 55.274824 1.742527368 0.217571 183 93 SH8358 8358 snoRNA cluster4 3' 40.084136 152.14918 40.084136 113.065044 76.57459 1.88408468 0.217567 188 91 SH5873 5873 snR35 3' 26.666498 86.880993 56.7737455 1.754147547 0.217556 75 17 SH5376 5376 snR31 5' 27.474904 91.509684 59.492294 1.774460715 0.217324 111 89 SH2686 2686 Pro4 96-102 + 3' flank 96 28.334217 95.144775 61.739496 1.79056308 0.217285 132 91 SH20466 20466 YGL183C spliced 120.105836 212.550167 166.3280015 2.220965369 0.217276 156 95 SH2374 2374 Phe4 5' flank 31.596694 102.505801 67.0512475 1.826406862 0.217213 145 10 SH15871 15871 YDL079C_4_314747_312950_INTRON_413_704 intron/exon 26.763178 113.300682 26.763178 87.537504 57.150341 1.757018826 0.217133 160 47 SH16479 16479 YER102W_5_362729_363698_INTRON_1_360 intron 138.776219 373.279003 138.776219 235.502784 187.1395015 2.272165468 0.217107 173 49 SH10404 10404 RUF8 5' 43.400409 117.243958 80.3221835 1.904835506 0.217065 49 49 SH20085 20085 YCR097W spliced 28.856336 97.394431 63.1253835 1.80020403 0.216914 75 52 SH3979 3979 RNase MRP RNaseMRP 311 327 25.605522 80.235143 52.9203325 1.723622564 0.216865 9 94 SH15239 15239 MT tRNA fMet 5' 24.636552 97.886404 24.636552 74.249852 49.443202 1.694106588 0.216857 129 82 SH2227 2227 Phe1 tRNA 11 25 541.094154 718.979049 630.0366015 2.79936578 0.216837 23 30 SH6327 6327 snR42 3' 36.955713 109.271301 73.113507 1.863997616 0.216705 168 79 SH452 452 Asp1 3' flank 28.696863 96.745866 62.7213645 1.797415498 0.216503 53 93 SH15639 15639 YBR186W_2_600511_602318_INTRON_1552_1664 intron 27.10236 115.887298 27.10236 89.784938 58.443649 1.766737324 0.216486 20 3 SH12355 12355 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.671187 119.07038 27.671187 92.399193 60.03519 1.778405889 0.216462 143 39 SH11730 11730 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5536 5553 800.632708 1014.550039 907.5913735 2.957890359 0.216452 146 48 SH10671 10671 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 241 257 28.458988 95.741448 62.100218 1.793093125 0.216395 150 34 SH345 345 Arg5 61-72 + 3' flank 61 3' flank 1854.220176 2146.654781 2000.437479 3.301124983 0.216381 58 43 SH1884 1884 Leu9 3' flank 25.311938 78.429161 51.8705495 1.714920849 0.216375 79 101 SH16648 16648 YFR031C-A_6_221405_220494_INTRON_5_151 intron 30.896452 131.233788 30.896452 101.337336 66.116894 1.820312443 0.216367 23 78 SH3955 3955 RNase MRP RNaseMRP 191 206 26.820393 87.974458 57.3974255 1.758892413 0.21636 41 43 SH7212 7212 snR64 3' 26.720869 87.337618 57.0292435 1.756097611 0.216339 30 23 SH4320 4320 telomerase RNA telomerase 636 652 27.778827 92.870364 60.3245955 1.780494418 0.216233 50 98 SH2501 2501 Pro1 5' flank - tRNA8 8 2226.259433 2523.771357 2375.015395 3.375666429 0.216232 112 53 SH12425 12425 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 73.255768 226.314361 73.255768 154.058593 113.6571805 2.055596878 0.21623 166 72 SH14854 14854 MT tRNA Ser2; tRNA Arg2 5' / tRNA Ser 26.264969 109.724132 26.264969 84.459163 55.362066 1.743212289 0.216125 95 68 SH3410 3410 Thr4 3' flank 27.032479 89.370848 58.2016635 1.764935398 0.21606 212 11 SH7777 7777 snoRNA cluster1 intergenic 32.885195 136.190682 32.885195 104.305487 68.595341 1.836294619 0.215884 166 6 SH12344 12344 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.191615 150.212026 39.191615 112.020411 75.606013 1.878556337 0.215796 8 15 SH1813 1813 Leu8 91-101 + 3' flank 91 25.3182 78.529112 51.923656 1.715365264 0.215635 53 84 SH7663 7663 snoRNA cluster1 snR78 36.111764 143.405603 36.111764 108.293839 72.2028015 1.858554049 0.215611 15 93 SH13649 13649 MT ATP6 ATP6 29.099684 126.304463 29.099684 98.204779 63.6522315 1.803813634 0.21552 80 77 SH10702 10702 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 396 414 25.95745 82.587433 54.2724415 1.734579359 0.215467 192 81 SH10913 10913 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1451 1464 326.09871 463.964731 395.0317205 2.59663197 0.215461 74 92 SH7530 7530 snR79 5' - 10 -9 10 28.437027 95.719664 62.0783455 1.792940134 0.215442 178 63 SH652 652 Gln2 tRNA 46 58 36.27639 108.506192 72.391291 1.859686322 0.215439 3 25 SH7977 7977 snoRNA cluster 2 snR57 34.904127 140.721518 34.904127 106.817391 70.860759 1.8504058 0.215349 37 70 SH10588 10588 RUF8 RUF8 866 882 27.679764 92.529848 60.104806 1.7789092 0.21516 8 98 SH11569 11569 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4731 4748 26094.9891 21937.03341 24016.01125 4.380500878 0.215141 194 44 SH7553 7553 snR79 3' 26.367039 85.192012 55.7795255 1.746474816 0.215114 196 48 SH15408 15408 YBL059C-A_2_110500_110086_INTRON_35_119 intron 26.44938 111.16989 26.44938 85.72051 56.084945 1.748846298 0.215044 40 13 SH10096 10096 RUF6 RUF6 326 342 27.318464 91.016736 59.1676 1.772083953 0.215009 117 77 SH9426 9426 RUF2 5' 25.996284 82.870387 54.4333355 1.735864947 0.214989 63 81 SH20657 20657 YIL018W spliced 38.740088 111.511771 75.1259295 1.875789858 0.214942 137 28 SH15803 15803 YDL061C_4_341182_340627_INTRON_1_408 intron 155.208588 410.127755 155.208588 255.919167 205.5638775 2.312946801 0.214734 125 96 SH4131 4131 SRP RNA SRP RNA 546 560 33.84859 105.56668 69.707635 1.843280348 0.214618 92 7 SH190 190 Arg2 66-73 + 3' flank 66 3' flank 192.522441 301.546775 247.034608 2.392757799 0.214462 182 81 SH11846 11846 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6116 6133 188.481084 296.607301 242.5441925 2.38479088 0.214363 23 98 SH20949 20949 YLR448W spliced 88.335566 173.047535 130.6915505 2.11624751 0.214331 78 92 SH17765 17765 YKL157W_11_154993_158183_INTRON_282_664 3' exon 28.043138 121.174811 28.043138 94.131673 61.0874055 1.78595168 0.214295 184 93 SH9217 9217 snR6 / U6 RNA 5' 26.642441 87.027854 56.8351475 1.754616991 0.214186 170 42 SH16448 16448 YER074W_5_306319_307192_INTRON_4_469 3' exon 28.932346 125.863175 28.932346 97.930829 63.4315875 1.802305581 0.214152 66 101 SH8731 8731 LSR1 / U2 RNA U2 296 313 22.87661 64.692063 43.7843365 1.641318773 0.214143 149 12 SH351 351 Arg5 3' flank 973.405626 1208.269115 1090.837371 3.037760008 0.214016 188 89 SH10529 10529 RUF8 RUF8 571 592 24.735748 75.052365 49.8940565 1.698048815 0.214012 175 36 SH6834 6834 snR52 snR52 76 92 33.715694 105.433913 69.5748035 1.842451988 0.214007 19 76 SH10577 10577 RUF8 RUF8 811 828 28.763153 97.219463 62.991308 1.799280626 0.213996 194 27 SH5624 5624 snR34 snR34 41 60 26.30603 84.905658 55.605844 1.745120437 0.21397 161 67 SH6148 6148 snR39B snR39B 81 93 108.66958 198.655489 153.6625345 2.186567992 0.213927 51 101 SH1114 1114 Gly4 tRNA 46 60 466.067572 632.550249 549.3089105 2.739816644 0.21386 118 66 SH19414 19414 YPR132W_16_794960_795762_INTRON_66_430 5' exon 30.041265 129.016127 30.041265 99.974862 65.0080635 1.812967229 0.213757 135 84 SH11133 11133 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2551 2566 214.943677 329.022826 271.9832515 2.434542161 0.213721 208 38 SH11001 11001 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1891 1907 38350.45895 30813.11158 34581.78526 4.53884741 0.213657 5 23 SH17396 17396 YIL069C_9_232366_231550_INTRON_4_412 intron 26.122967 108.905077 26.122967 83.78211 54.9525385 1.739987759 0.213612 206 57 SH3907 3907 RNase MRP 5' 28.618533 96.632274 62.6254035 1.796750537 0.213597 206 102 SH12980 12980 MT COX1 COX1ai2 30.961512 131.563932 30.961512 101.60242 66.281966 1.821395382 0.213552 134 23 SH124 124 Arg1 5' flank - tRNA10 5' flank 10 26.332776 85.112101 55.7224385 1.746030114 0.213545 189 7 SH102 102 Ala2 3' flank 26.585404 86.728419 56.6569115 1.753252896 0.213451 115 2 SH1520 1520 Leu3 tRNA 71 87 223.423309 339.366725 281.395017 2.449316403 0.213397 3 88 SH1342 1342 Ile3 tRNA-intron/exon 91 105 71.395443 151.996276 111.6958595 2.048037074 0.21335 23 67 SH11179 11179 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2781 2794 27.679869 92.662248 60.1710585 1.779387651 0.213344 41 34 SH696 696 Gln3 tRNA 11 28 27.463707 91.748765 59.606236 1.775291698 0.213341 166 104 SH237 237 Arg3 41-53 41 53 55.068174 131.913044 93.490609 1.970767989 0.213338 196 95 SH227 227 Arg3 5' flank - tRNA10 5' flank 10 25.318989 78.727071 52.02303 1.716195643 0.213289 25 13 SH4820 4820 snR5 3' 26.866145 88.552251 57.709198 1.761245039 0.213236 142 79 SH11309 11309 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2/25S 3431 3450 26.872072 88.592743 57.7324075 1.761419668 0.213212 211 68 SH4933 4933 snR9 snR9 71 83 420.877456 579.237651 500.0575535 2.699019992 0.21316 19 4 SH19999 19999 YBR078W spliced 34.167745 106.03888 70.1033125 1.84573854 0.213055 194 57 SH21193 21193 YOL120C spliced 36.961841 109.475185 73.218513 1.864620905 0.213036 162 6 SH6375 6375 snR43 snR43 116 128 26.867195 88.581198 57.7241965 1.761357896 0.212992 203 20 SH10007 10007 RUF5-1 3' 27.1553 90.453022 58.804161 1.769408058 0.212989 181 2 SH11025 11025 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2011 2026 297.893557 430.267525 364.080541 2.561197468 0.212743 135 39 SH7192 7192 snR64 snR64 26 43 2435.881376 2738.231988 2587.056682 3.412805944 0.212687 198 3 SH2600 2600 Pro3 5' flank 26.387009 85.533756 55.9603825 1.747880674 0.212659 125 39 SH9500 9500 RUF2 3' 28.431412 95.906795 62.1691035 1.793574605 0.212635 160 73 SH12482 12482 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S/3' flank 24.504596 97.317854 24.504596 73.813258 49.158927 1.691602395 0.212529 90 45 SH14029 14029 MT COB Exon4 24.726632 98.8397 24.726632 75.113068 49.91985 1.698273272 0.212528 210 37 SH18446 18446 YMR142C_13_551206_550205_INTRON_5_406 intron 26.297124 110.285605 26.297124 84.988481 55.6428025 1.745408996 0.212373 144 56 SH1960 1960 Lys2 tRNA 1 13 33.092165 104.748597 68.920381 1.83834767 0.212242 79 34 SH11277 11277 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3271 3288 27.8359 93.405443 60.6206715 1.782620743 0.212217 149 73 SH8031 8031 snoRNA cluster 2 snR55 37.474128 146.61885 37.474128 110.144722 73.809425 1.868111822 0.212168 48 9 SH16273 16273 YDR447C_4_1355542_1354818_INTRON_4_317 intron 326.31203 790.530407 326.31203 465.218377 395.7652035 2.597437607 0.212149 114 32 SH9158 9158 snR7 U5 RNA U5 61 80 26.42288 85.806945 56.1149125 1.74907829 0.212146 21 33 SH3790 3790 RNaseP 5' flank 26.85393 88.57929 57.71661 1.761300815 0.212069 195 25 SH9420 9420 RUF2 5' 25.019476 76.961576 50.990526 1.707489492 0.212007 142 8 SH8174 8174 snoRNA cluster 3; snR70 40.323344 153.010852 40.323344 113.687508 77.005426 1.886521328 0.211997 166 38 SH1859 1859 Leu9 tRNA-exon/intron 36 52 28.618928 96.768189 62.6935585 1.797222921 0.211828 48 85 SH17434 17434 YIL133C_9_99416_98527_INTRON_32_321 intron 52.216605 179.691934 52.216605 128.475329 90.345967 1.955908771 0.211807 23 82 SH19129 19129 YPL075W_16_412249_415357_INTRON_9_759 intron 24.8005 99.430473 24.8005 75.629973 50.2152365 1.700835512 0.211728 13 38 SH6356 6356 snR43 snR43 21 38 27.298241 91.167428 59.2328345 1.772562516 0.211708 17 101 SH18568 18568 YNL012W_14_609682_611661_INTRON_106_189 intron 27.866251 120.439947 27.866251 93.573696 60.7199735 1.783331573 0.211679 77 59 SH10916 10916 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1466 1481 4280.779166 4493.176826 4386.977996 3.642165456 0.211666 209 40 SH10940 10940 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1586 1601 35.623564 107.89972 71.761642 1.855892367 0.211599 190 89 SH16245 16245 YDR381W_4_1236547_1237993_INTRON_286_1051 intron/exon 24.673676 98.540472 24.673676 74.866796 49.770236 1.6969697 0.21153 113 51 SH8654 8654 LSR1 / U2 RNA 5' 26.559937 86.743863 56.6519 1.75321448 0.211446 2 7 SH1798 1798 Leu8 tRNA 16 31 81.040108 164.185474 122.612791 2.088535778 0.211443 126 32 SH5900 5900 snR36 5' 26.890487 88.885487 57.887987 1.762588448 0.211305 6 100 SH21360 21360 Ile2_3 spliced 26.471907 86.198182 56.3350445 1.750778642 0.211254 119 5 SH5962 5962 snR36 snR36 266 285 26.941958 89.2246 58.083279 1.764051126 0.211247 119 49 SH15042 15042 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 29.120391 126.588306 29.120391 98.467915 63.794153 1.804780876 0.211191 38 6 SH10728 10728 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 526 543 26.795285 88.287152 57.5412185 1.759979054 0.211112 117 46 SH1238 1238 Ile1 3' flank 204.592196 316.921673 260.7569345 2.416235867 0.21105 84 29 SH4892 4892 snR8 3' 44.30532 118.746194 81.525757 1.91129484 0.21104 194 76 SH9962 9962 RUF5-1 RUF5-1 616 635 25.38887 79.35614 52.372505 1.719103347 0.210999 90 97 SH14773 14773 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu 35.043106 141.258785 35.043106 107.215679 71.1293925 1.8520491 0.210898 72 79 SH11298 11298 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3376 3394 26.184998 84.408049 55.2965235 1.742697828 0.210889 38 72 SH15024 15024 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.508752 118.625028 27.508752 92.116276 59.812514 1.776792057 0.210886 86 49 SH6562 6562 snR47 5' 25.598129 80.694684 53.1464065 1.725473905 0.210849 75 101 SH7719 7719 snoRNA cluster1 snR77 27.605106 119.134082 27.605106 92.528976 60.067041 1.778636238 0.210821 90 74 SH281 281 Arg4 1-13 1 13 42.204401 116.126667 79.165534 1.898536146 0.210746 49 36 SH16082 16082 YDR025W_4_491510_492319_INTRON_46_384 intron 28.827874 125.57317 28.827874 97.745296 63.286585 1.801311661 0.210741 162 80 SH17812 17812 YKR057W_11_551293_551878_INTRON_25_346 intron 28.923174 126.060605 28.923174 98.137431 63.5303025 1.802980923 0.210719 192 98 SH18355 18355 YMR033W_13_337787_339276_INTRON_31_116 5' exon 27.33297 117.719275 27.33297 91.386305 59.3596375 1.77349124 0.2107 18 87 SH3930 3930 RNase MRP RNaseMRP 66 83 28.045149 94.406665 61.225907 1.786935227 0.210693 181 85 SH8767 8767 LSR1 / U2 RNA U2 476 490 118.565541 211.457583 165.011562 2.217514375 0.210669 196 13 SH5064 5064 snR11 5' 30.682861 101.270529 65.976695 1.819390556 0.210662 185 49 SH5415 5415 snR31 snR31 141 157 245.877972 367.277549 306.5777605 2.486540647 0.210632 42 8 SH5151 5151 snR13 5' 163.5672 266.774624 215.170912 2.332783561 0.210593 212 46 SH12520 12520 MT_ORF6 + ORF7 (hypothetical) ORF6/7 34.56404 140.223002 34.56404 106.658962 70.611501 1.848875443 0.210418 40 77 SH2070 2070 Lys4 tRNA 16 30 37.549228 110.330952 73.94009 1.868879975 0.210402 47 51 SH1486 1486 Leu3 5' flank 26.898114 89.036683 57.9673985 1.76318381 0.21019 92 88 SH11431 11431 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4041 4058 606.793894 798.237102 702.515498 2.84665591 0.210177 193 43 SH10672 10672 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 246 263 28.517349 96.460506 62.4889275 1.795803071 0.210159 152 79 SH4965 4965 snR9 3' 27.520838 92.238057 59.8794475 1.777277785 0.20991 193 70 SH11552 11552 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4646 4664 52.229506 128.625352 90.427429 1.956300183 0.209821 125 23 SH1225 1225 Ile1 3' flank 28.45778 96.267423 62.3626015 1.794924224 0.209344 100 84 SH7427 7427 snR69 snR69 36 52 37.050958 109.785805 73.4183815 1.865804806 0.209274 104 93 SH10863 10863 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1201 1219 28.433019 96.170471 62.301745 1.794500211 0.209226 49 16 SH10879 10879 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1281 1296 1265.551745 1532.595883 1399.073814 3.145840628 0.209157 186 18 SH2437 2437 Phe5 5' flank 86.088 170.753029 128.4205145 2.108634406 0.2091 214 41 SH3833 3833 RNaseP RNaseP 131 146 26.557323 86.937342 56.7473325 1.753945452 0.209086 33 86 SH7175 7175 snR64 5' 25.553819 80.567726 53.0607725 1.724773568 0.209011 59 87 SH4857 4857 snR8 snR8 66 82 184.770935 293.060512 238.9157235 2.378244732 0.208981 3 89 SH21932 21932 copy of SH21372 27.12737 90.648241 58.8878055 1.77002537 0.208872 82 46 SH5862 5862 snR35 snR35 496 513 27.454628 92.034015 59.7443215 1.776296633 0.208853 176 16 SH12201 12201 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7891 7909 30.802267 101.58835 66.1953085 1.820827211 0.208649 174 87 SH14084 14084 MT COB Cytbi4 28.106067 121.924478 28.106067 94.818411 61.462239 1.788608377 0.208641 110 69 SH12404 12404 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.328296 137.556375 33.328296 105.228079 69.2781875 1.840596517 0.208606 144 39 SH6705 6705 snR49 snR49 51 67 26.961584 89.596576 58.27908 1.765512687 0.208583 193 21 SH9356 9356 RUF1 RUF1 356 378 28.010681 94.418282 61.2144815 1.786854175 0.208555 202 69 SH7457 7457 snR71 5' 29.204351 98.762683 63.983517 1.806068108 0.208443 190 93 SH6151 6151 snR39B 96 + 3' 96 26.275791 85.196508 55.7361495 1.746136962 0.208439 72 13 SH12498 12498 MT_tRNA Pro tRNA 27.127356 116.80741 27.127356 90.680054 58.903705 1.770142612 0.208424 80 28 SH9442 9442 RUF2 RUF2 51 66 131.54675 227.852947 179.6998485 2.254547711 0.208335 34 47 SH15202 15202 MT COX3 cox3 28.297308 122.96966 28.297308 95.672352 61.98483 1.792285414 0.208138 122 56 SH3899 3899 RNase MRP 5' 27.154687 90.816176 58.9854315 1.770744761 0.208135 202 6 SH11264 11264 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S/ITS2 3206 3225 26.285554 85.287663 55.7866085 1.74652996 0.208107 141 65 SH12458 12458 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank / 5S 1220.944734 2705.064269 1220.944734 1485.119535 1353.032135 3.131308111 0.208069 58 74 SH18853 18853 YNR053C_14_723108_721117_INTRON_811_1341 exon/intron 28.643287 124.801898 28.643287 97.158611 62.900949 1.798657198 0.208067 213 5 SH17091 17091 YHL001W_8_104270_105084_INTRON_130_527 intron 1185.918052 2631.83771 1185.918052 1446.919658 1316.418855 3.119394094 0.208043 39 49 SH9074 9074 snR14 / U4 RNA 5' - 3 -14 3 42.617131 116.797587 79.707359 1.90149842 0.208035 143 100 SH11149 11149 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2631 2650 41087.13474 32861.33361 36974.23417 4.567899187 0.20796 21 18 SH17523 17523 YJL136C_10_156971_156248_INTRON_25_484 intron 24.716312 99.128253 24.716312 75.411941 50.0641265 1.699526643 0.207927 89 87 SH14217 14217 MT ATP9 ATP9 59.68789 196.663634 59.68789 137.975744 98.831817 1.99489678 0.207916 214 33 SH17556 17556 YJL189W_10_75932_76473_INTRON_7_392 intron 27.643259 119.546175 27.643259 92.902916 60.2730875 1.780123439 0.207906 64 92 SH18046 18046 YLR333C_12_796335_795573_INTRON_1_423 intron 89.748111 264.192297 89.748111 175.444186 132.5961485 2.122530909 0.207763 204 47 SH6602 6602 snR47 3' 26.651559 87.663405 57.157482 1.757073088 0.207747 71 18 SH4716 4716 snR4 snR4 116 130 159.245912 261.952051 210.5989815 2.323456267 0.207578 75 26 SH21424 21424 Trp1 spliced 116.155564 208.829767 162.4926655 2.210833763 0.20746 46 76 SH9571 9571 RUF3 RUF3 241 258 25.929071 83.094278 54.5116745 1.736489523 0.207413 80 31 SH10352 10352 RUF7 RUF7 371 387 27.889195 93.986977 60.938086 1.784888809 0.207388 186 8 SH19135 19135 YPL075W_16_412249_415357_INTRON_9_759 intron 28.61479 124.705928 28.61479 97.091138 62.852964 1.798325763 0.207349 45 42 SH9424 9424 RUF2 5' 24.891917 76.548 50.7199585 1.70517889 0.207295 127 12 SH3699 3699 Val3 5' flank 31.117789 102.216344 66.6670665 1.823911346 0.207245 96 98 SH10768 10768 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 726 741 71.728552 152.926409 112.3274805 2.050486018 0.207206 64 21 SH4945 4945 snR9 snR9 131 146 103.886623 193.404244 148.6454335 2.172151572 0.207115 190 101 SH2573 2573 Pro2 101-103 + 3' flank 101 27.473349 92.240252 59.8568005 1.777113499 0.207098 151 65 SH18102 18102 YLR367W_12_855877_857316_INTRON_698_1180 intron 26.930791 115.464353 26.930791 89.533562 58.2321765 1.765163023 0.207086 159 31 SH7090 7090 snR63 5' 26.93139 89.550956 58.241173 1.765230113 0.206939 39 86 SH9650 9650 RUF4 RUF4 26 42 26.617873 87.522061 57.069967 1.756407621 0.206903 17 28 SH10783 10783 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 801 816 98.330577 186.368831 142.349704 2.153356568 0.206888 135 65 SH9780 9780 RUF4 RUF4 676 691 637.921092 835.815712 736.868402 2.867389934 0.206887 115 59 SH14458 14458 MT 21S rRNA 21S rRNA3 39.053274 150.397516 39.053274 112.344242 75.698758 1.879088754 0.206884 200 70 SH20528 20528 YGR118W spliced 28.834622 98.071355 63.4529885 1.802452081 0.206874 142 93 SH174 174 Arg2 5' flank - tRNA3 5' flank 3 24.168189 72.308615 48.238402 1.683392912 0.206757 77 21 SH6082 6082 snR37 snR37 326 342 33.789743 105.899415 69.844579 1.844132704 0.206688 106 67 SH19387 19387 YPR043W_16_654161_654842_INTRON_3_405 intron 93.336424 272.45143 93.336424 180.115006 136.725715 2.135850203 0.206676 145 83 SH19798 19798 Negative Control 75.409235 157.530749 116.469992 2.066214046 0.206617 198 43 SH11986 11986 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6816 6833 35.55771 108.083132 71.820421 1.856247947 0.20657 85 59 SH11476 11476 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4266 4282 28655.69512 23954.75268 26305.2239 4.420042003 0.206519 112 99 SH176 176 Arg2 5' flank - tRNA10 5' flank 10 27.253093 91.353242 59.3031675 1.773077891 0.206447 186 30 SH10234 10234 RUF6 RUF6 1016 1035 26.399534 86.161033 56.2802835 1.750356276 0.206443 146 55 SH16693 16693 YGL031C_7_438393_437938_INTRON_1_456 5' exon 28.889644 126.19131 28.889644 98.301666 63.595655 1.803427445 0.206407 21 3 SH19954 19954 YBL050W spliced 144.831593 244.459976 194.6457845 2.289245003 0.206396 154 17 SH10944 10944 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1606 1621 28.322961 95.912968 62.1179645 1.793217216 0.206396 113 3 SH5685 5685 snR34 snR34 346 361 94.275831 181.339261 137.807546 2.139272999 0.206296 146 98 SH19916 19916 YAL003W spliced 26.076321 84.118271 55.097296 1.741130286 0.206294 27 8 SH17610 17610 YJL205C-A_10_50443_50139_INTRON_33_175 3' exon 35.486731 142.496478 35.486731 108.009747 71.748239 1.855811246 0.206275 66 94 SH11519 11519 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4481 4503 77.214497 159.858623 118.53656 2.07385232 0.206275 17 86 SH14915 14915 MT tRNA Tyr tRNA 36.036183 143.735949 36.036183 108.699766 72.3679745 1.859546417 0.206202 160 56 SH20384 20384 YFL034C-B spliced 26.62074 87.608626 57.114683 1.756747771 0.206146 89 68 SH11852 11852 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6146 6162 29.214811 98.908165 64.061488 1.806597022 0.206029 205 13 SH9112 9112 snR14 / U4 RNA 3' 47.055595 122.456038 84.7558165 1.928169512 0.206019 192 8 SH2112 2112 Met1 5' flank 28.764736 97.840917 63.3028265 1.801423102 0.205963 100 56 SH9015 9015 snR17a / U3a U3a 361 379 25.575584 80.966468 53.271026 1.726491061 0.205935 138 17 SH2081 2081 Lys4 tRNA 71 83 82.907158 167.034222 124.97069 2.096808168 0.205913 136 78 SH15006 15006 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.093041 129.577381 30.093041 100.48434 65.2886905 1.814837958 0.205906 179 82 SH13096 13096 MT COX1 COX1ai3 35.759191 143.130847 35.759191 108.371656 72.0654235 1.857726943 0.205881 33 88 SH6544 6544 snR46 3' 27.433814 92.171164 59.802489 1.77671926 0.205733 101 27 SH2677 2677 Pro4 tRNA-intron 51 65 1146.564236 1406.015243 1276.28974 3.105949278 0.205711 152 85 SH15607 15607 YBR119W_2_479296_480281_INTRON_9_97 intron 25.665674 106.232111 25.665674 81.566437 53.6160555 1.72929486 0.205663 122 18 SH12255 12255 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.390831 123.650201 28.390831 96.25937 62.3251005 1.794662987 0.205657 77 92 SH3649 3649 Val2 5' flank - tRNA6 6 30.064091 100.447755 65.255923 1.814619937 0.205628 159 10 SH5401 5401 snR31 snR31 71 85 31.220317 102.488905 66.854611 1.825131366 0.205523 103 42 SH14431 14431 MT 21S rRNA 21S rRNA3 735.044952 1681.671897 735.044952 947.626945 841.3359485 2.924969446 0.205475 81 45 SH8475 8475 snoRNA cluster 5 3' 25.499425 105.02189 25.499425 80.522465 53.010945 1.724365546 0.205437 172 12 SH1325 1325 Ile3 tRNA 6 22 57.511788 135.453166 96.482477 1.984448445 0.205432 202 91 SH21830 21830 copy of SH16330 26.056342 84.068506 55.062424 1.740855326 0.205407 92 17 SH20910 20910 YLR333C spliced 27.853046 93.981145 60.9170955 1.784739188 0.205378 38 59 SH6412 6412 snR45 5' 27.42643 92.166787 59.7966085 1.776676553 0.20536 122 19 SH2548 2548 Pro2 5' flank 26.399245 86.255712 56.3274785 1.75072031 0.205352 48 72 SH9663 9663 RUF4 RUF4 91 105 38.35007 111.575451 74.9627605 1.874845571 0.205255 212 18 SH11334 11334 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3556 3574 37.061436 110.01534 73.538388 1.866514106 0.205245 121 74 SH15527 15527 YBR048W_2_332790_333771_INTRON_46_556 intron 25.707414 106.590533 25.707414 81.883119 53.7952665 1.730744063 0.205094 85 74 SH8187 8187 snoRNA cluster 3; snR70/intergenic 26.231167 110.438409 26.231167 85.207242 55.7192045 1.746004907 0.205069 146 67 SH7152 7152 snR63 3' 26.734709 88.449865 57.592287 1.760364325 0.204993 182 86 SH9314 9314 RUF1 RUF1 146 163 27.306909 91.688586 59.4977475 1.774500524 0.204954 41 51 SH4961 4961 snR9 3' 24.48663 74.279207 49.3829185 1.693576753 0.204903 22 60 SH11566 11566 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4716 4729 88.987135 174.787089 131.887112 2.120202358 0.204873 46 77 SH11487 11487 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4321 4336 134.641313 232.127658 183.3844855 2.263362591 0.204857 207 33 SH5273 5273 snR30 snR30 216 230 168.496476 273.787186 221.141831 2.344670901 0.204805 93 2 SH16589 16589 YFL034C-A_6_64931_64242_INTRON_13_333 intron 31.376907 133.182058 31.376907 102.805151 67.091029 1.826664453 0.204729 159 99 SH1677 1677 Leu6 5' flank 24.387474 73.722149 49.0548115 1.690681611 0.204678 150 21 SH11071 11071 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2241 2256 30.690428 101.60786 66.149144 1.820524229 0.204644 120 62 SH16461 16461 YER093C-A_5_348396_347908_INTRON_125_199 5' exon 32.308353 135.451734 32.308353 104.143381 68.225867 1.833949063 0.204641 146 29 SH5133 5133 snR11 3' 25.676161 81.727835 53.701998 1.729990444 0.204561 213 10 SH5791 5791 snR35 snR35 141 157 25.553182 80.94208 53.247631 1.726300291 0.204532 76 74 SH13194 13194 MT COX1 Exon4 25.80721 107.396008 25.80721 82.588798 54.198004 1.733983293 0.20436 200 29 SH6384 6384 snR43 snR43 161 181 26.417505 86.466694 56.4420995 1.75160316 0.204292 155 34 SH10375 10375 RUF7 RUF7 486 500 29.227052 99.027635 64.1273435 1.807043249 0.204174 62 76 SH7356 7356 snR68 snR68 1 20 71.024539 152.301388 111.6629635 2.04790915 0.20415 96 38 SH8906 8906 LSR1 / U2 RNA 1171-1175 + 3' 1171 23.88242 70.871835 47.3771275 1.675568726 0.204119 58 46 SH4057 4057 SRP RNA SRP RNA 176 194 27.384124 92.077853 59.7309885 1.776199702 0.204103 48 2 SH5655 5655 snR34 snR34 196 218 25.837976 82.807403 54.3226895 1.734981264 0.204059 115 98 SH11886 11886 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6316 6331 62.836462 142.102048 102.469255 2.010593579 0.204035 198 46 SH16597 16597 YFL034C-A_6_64931_64242_INTRON_13_333 intron 26.593617 113.221137 26.593617 87.62752 57.1105685 1.756716483 0.203988 189 76 SH597 597 Gln1 tRNA 26 41 27.48982 92.535854 60.012837 1.778244158 0.203985 158 103 SH15584 15584 YBR084C-A_2_415219_414144_INTRON_3_508 intron 28.487801 124.292722 28.487801 96.804921 62.646361 1.796895849 0.203946 214 56 SH21885 21885 copy of SH18600 26.09127 84.420889 55.2560795 1.742380068 0.203889 123 88 SH13089 13089 MT COX1 COX1ai3 26.51689 112.659174 26.51689 87.142284 56.829587 1.7545745 0.20388 52 68 SH10301 10301 RUF7 RUF7 116 132 24.252267 73.007814 48.6300405 1.686904631 0.203798 174 57 SH4611 4611 snR3 5' 24.496199 74.42312 49.4596595 1.694251122 0.203725 81 101 SH11824 11824 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6006 6019 28.788217 98.119852 63.4540345 1.80245924 0.203649 188 80 SH14164 14164 MT COB intronic 24.047849 94.901307 24.047849 71.853458 47.9506535 1.68079453 0.203561 169 20 SH16632 16632 YFL039C_6_54695_53260_INTRON_11_318 3' exon 27.528251 119.260917 27.528251 92.732666 60.1304585 1.779094515 0.203528 14 43 SH6080 6080 snR37 snR37 316 335 29.610353 99.754768 64.6825605 1.810787203 0.20344 19 87 SH10164 10164 RUF6 RUF6 666 680 40.405162 114.289925 77.3475435 1.888446525 0.203314 86 29 SH4677 4677 snR4 5' 32.493206 104.44606 68.469633 1.835498 0.2033 16 102 SH12377 12377 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.76131 128.795585 29.76131 100.034275 64.8977925 1.812229925 0.203262 59 15 SH6988 6988 snR60 snR60 21 37 29.006688 98.677855 63.8422715 1.805108331 0.203261 18 48 SH771 771 Gln4 3' flank 607.908518 803.18251 705.545514 2.848525035 0.203155 134 21 SH1593 1593 Leu4 3' flank 247.851496 371.440036 309.645766 2.490865146 0.203109 56 13 SH3873 3873 RNaseP RNaseP 331 343 76.063743 158.678638 117.3711905 2.06956151 0.203088 41 92 SH400 400 Asn1 3' flank 23.377861 68.120977 45.749419 1.660385583 0.202972 164 73 SH17327 17327 YIL004C_9_348502_347943_INTRON_12_142 intron 28.428045 124.057597 28.428045 96.629552 62.5287985 1.796080084 0.202875 145 62 SH19386 19386 YPR043W_16_654161_654842_INTRON_3_405 intron 26.993827 116.332155 26.993827 90.338328 58.6660775 1.768387052 0.20283 40 30 SH13731 13731 MT COB Exon1 42.760818 159.047629 42.760818 117.286811 80.0238145 1.903219249 0.20275 44 75 SH18325 18325 YML094W_13_82275_82849_INTRON_17_99 5' exon 57.017755 191.050287 57.017755 135.032532 96.0251435 1.982384965 0.202707 79 27 SH6353 6353 snR43 snR43 6 21 31.925084 103.750863 67.8379735 1.831472866 0.2027 70 85 SH15385 15385 YBL027W_2_168385_169338_INTRON_3_386 3' exon 41.55621 156.343086 41.55621 115.786876 78.671543 1.895817668 0.202673 100 3 SH4086 4086 SRP RNA SRP RNA 321 335 108.165382 199.332255 153.7488185 2.186811787 0.202639 4 102 SH20212 20212 YDR064W spliced 43.801161 118.62855 81.2148555 1.909635476 0.202455 8 96 SH1883 1883 Leu9 3' flank 28.316073 96.182013 62.249043 1.794132679 0.202434 132 5 SH18265 18265 YML056C_13_164176_162194_INTRON_461_868 intron 27.299905 118.148171 27.299905 91.848266 59.5740855 1.775057384 0.202324 186 22 SH21272 21272 YPL090C spliced 29.985145 100.485085 65.235115 1.814481432 0.202295 14 88 SH11461 11461 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4191 4206 107.143413 198.066804 152.6051085 2.183569072 0.202292 96 97 SH5316 5316 snR30 snR30 431 445 25.578233 81.293314 53.4357735 1.7278321 0.202284 24 49 SH7488 7488 snR71 snR71 56 74 27.219572 91.519604 59.369588 1.773564035 0.202145 63 36 SH11630 11630 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5036 5052 28.411287 96.614851 62.513069 1.795970821 0.202119 68 46 SH12031 12031 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS/3'flank 7041 7063 25.335181 79.76234 52.5487605 1.720562477 0.202034 59 56 SH561 561 Cys1 3' flank 26.338494 86.160811 56.2496525 1.750119844 0.202023 121 22 SH4606 4606 snR3 5' 25.211021 78.98229 52.0966555 1.716809843 0.201949 186 35 SH4095 4095 SRP RNA SRP RNA 366 378 30.913856 102.14753 66.530693 1.823022047 0.201929 57 78 SH6164 6164 snR39B 3' 25.961939 83.771252 54.8665955 1.739308013 0.201924 107 29 SH27 27 Ala1 tRNA 31 45 296.321628 431.33246 363.827044 2.560894978 0.201887 214 57 SH10609 10609 RUF8 3' 26.157157 85.017802 55.5874795 1.744976982 0.20184 37 91 SH14357 14357 MT ORF9 and ORF10 (hypothetical) ORF9 38.537614 149.525416 38.537614 111.987802 75.262708 1.87657984 0.201826 117 69 SH14097 14097 MT COB Cytbi4 26.137641 110.040252 26.137641 84.902611 55.520126 1.744450443 0.201735 23 34 SH11347 11347 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3621 3638 26.102333 84.68005 55.3911915 1.743440707 0.201711 47 29 SH6700 6700 snR49 snR49 26 41 33.65605 105.990393 69.8232215 1.843999882 0.201672 50 13 SH21717 21717 copy of SH11502 55.781769 133.601466 94.6916175 1.976311535 0.201638 130 78 SH12094 12094 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7356 7383 26.640946 88.152465 57.3967055 1.758886965 0.201563 198 55 SH13406 13406 MT COX1 intronic 26.376165 111.82061 26.376165 86.444445 56.410305 1.751358448 0.20155 123 48 SH9021 9021 snR17a / U3a U3a 391 409 27.458014 92.578289 60.0181515 1.778282615 0.201536 12 85 SH15707 15707 YBR220C_2_663261_662457_INTRON_302_722 intron 27.955008 121.664042 27.955008 94.709034 61.332021 1.787687276 0.201431 63 45 SH19292 19292 YPL175W_16_218629_220087_INTRON_18_117 intron 26.958654 116.197721 26.958654 90.239067 58.5988605 1.767889171 0.201411 23 58 SH294 294 Arg4 66-72 + 3' flank 66 3' flank 26.109246 84.7529 55.431073 1.743753285 0.201379 44 98 SH18024 18024 YLR306W_12_744151_744851_INTRON_4_137 intron 28.11259 122.501852 28.11259 95.389262 61.750926 1.790643475 0.201365 123 86 SH14524 14524 MT 21S rRNA 21S rRNA3 26.652651 113.901136 26.652651 88.248485 57.450568 1.759294327 0.201341 95 67 SH11998 11998 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6876 6892 264.099845 391.795296 327.9475705 2.515804418 0.20133 123 42 SH9098 9098 snR14 / U4 RNA U4 106 120 29.651144 99.942007 64.7965755 1.811552054 0.201286 93 15 SH10570 10570 RUF8 RUF8 776 792 25.881042 83.315988 54.598515 1.737180831 0.201273 20 6 SH19827 19827 Negative Control 27.833555 94.204517 61.019036 1.785465342 0.201225 164 78 SH15351 15351 YBL026W_2_170585_171000_INTRON_55_182 5' exon 24.630111 99.042098 24.630111 75.411987 50.021049 1.699152795 0.201185 210 80 SH15546 15546 YBR078W_2_393082_394818_INTRON_59_388 intron 26.136698 110.08561 26.136698 84.948912 55.542805 1.744627809 0.201135 152 22 SH8186 8186 snoRNA cluster 3; snR70 43.010011 159.71103 43.010011 117.701019 80.355515 1.905015689 0.201103 17 32 SH1418 1418 Leu1 3' flank 44.097238 119.08738 81.592309 1.911649224 0.20107 126 98 SH20859 20859 YLR078C spliced 1204.070532 1473.539396 1338.804964 3.126717314 0.20099 72 20 SH288 288 Arg4 36-50 36 50 714.954683 927.506554 821.2306185 2.914465133 0.20096 34 70 SH5649 5649 snR34 snR34 166 188 25.573422 81.379407 53.4764145 1.728162281 0.200909 212 24 SH1915 1915 Lys1 tRNA 31 50 85.615343 170.953453 128.284398 2.108173841 0.20087 11 72 SH14693 14693 MT 21S rRNA 3' 255.252503 635.281848 255.252503 381.029345 318.140924 2.502619538 0.200811 203 17 SH5027 5027 snR10 snR10 166 182 25.225285 79.167384 52.1963345 1.717640006 0.200803 149 58 SH21917 21917 copy of SH20000 29.212405 99.180225 64.196315 1.807510099 0.200771 138 90 SH21466 21466 copy of SH1002 92.439342 179.590662 136.015002 2.133586812 0.200735 124 76 SH21377 21377 Leu8_9 spliced 33.409657 105.732232 69.5709445 1.842427899 0.200712 3 87 SH14578 14578 MT 21S rRNA intronic 27.831206 121.073535 27.831206 94.242329 61.0367675 1.785591525 0.200577 158 80 SH12489 12489 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 25.027438 101.972822 25.027438 77.945384 51.486411 1.711692619 0.200479 67 43 SH13682 13682 MT ORF 5 (hypothetical) 5' 25.125756 102.692079 25.125756 78.566323 51.8460395 1.714715586 0.20046 84 22 SH14307 14307 MT VAR1 includes 5’ processing site VAR1 25.874863 108.221529 25.874863 83.346666 54.6107645 1.737278256 0.200458 60 37 SH6693 6693 snR49 5' - 8 -9 8 26.819354 89.417307 58.1183305 1.76431313 0.20043 11 3 SH4903 4903 snR9 5' 24.687228 75.825637 50.2564325 1.701191657 0.200426 36 44 SH8707 8707 LSR1 / U2 RNA U2 176 190 30.389034 101.303315 65.8461745 1.818530549 0.200416 172 99 SH484 484 Asp2 5' flank 39.413661 113.179981 76.296821 1.882506443 0.200401 3 90 SH20282 20282 YDR450W spliced 28.763473 98.264102 63.5137875 1.802868012 0.200392 123 22 SH15561 15561 YBR082C_2_407127_406586_INTRON_48_142 3' exon 29.14051 127.215664 29.14051 99.075154 64.107832 1.80691109 0.200301 84 62 SH13433 13433 MT COX1 intronic 26.236179 110.894407 26.236179 85.658228 55.9472035 1.747778383 0.200288 14 94 SH2525 2525 Pro1 3' flank 26.957622 90.337931 58.6477765 1.768251551 0.20027 91 34 SH4138 4138 SRP RNA SRP RNA 581 597 405.421747 565.449702 485.4357245 2.686131734 0.200266 129 7 SH18631 18631 YNL096C_14_444312_443395_INTRON_145_489 intron 27.139954 117.458107 27.139954 91.318153 59.2290535 1.772534793 0.200235 11 93 SH19711 19711 Negative Control 26.741147 88.926112 57.8336295 1.762180448 0.200219 100 34 SH8708 8708 LSR1 / U2 RNA U2 181 197 25.736095 82.499551 54.117823 1.733340318 0.200077 125 12 SH17094 17094 YHL001W_8_104270_105084_INTRON_130_527 intron 26.977044 116.470173 26.977044 90.493129 58.7350865 1.768897613 0.199973 25 54 SH9176 9176 snR7 U5 RNA U5 151 165 160.623884 264.853791 212.7388375 2.327846782 0.199926 196 15 SH5568 5568 snR33 snR33 126 142 26.141762 85.087335 55.6145485 1.745188416 0.199918 6 31 SH5221 5221 snR30 5' 25.932189 83.758378 54.8452835 1.739139286 0.199883 120 42 SH6618 6618 snR48 5' 27.365433 92.312701 59.839067 1.776984813 0.199757 133 42 SH4077 4077 SRP RNA SRP RNA 276 293 88.819229 175.092075 131.955652 2.120427997 0.19968 70 34 SH6617 6617 snR48 5' 24.883555 77.108145 50.99585 1.707534835 0.199677 206 64 SH5063 5063 snR11 5' 28.265897 96.175554 62.2207255 1.793935071 0.199663 100 53 SH5596 5596 snR34 5' 25.992332 84.172812 55.082572 1.741014211 0.199499 135 81 SH9228 9228 snR6 / U6 RNA U6 11 25 34.052173 106.596836 70.3245045 1.847106681 0.199433 86 10 SH5083 5083 snR11 snR11 16 32 259.453365 386.530379 322.991872 2.509191594 0.199397 9 79 SH6261 6261 snR42 snR42 86 103 27.196248 91.624451 59.4103495 1.773862107 0.199305 205 92 SH15461 15461 YBL087C_2_60732_59815_INTRON_43_546 intron 48.525204 172.263522 48.525204 124.738318 86.631761 1.937677143 0.199264 77 57 SH14019 14019 MT COB Exon4 25.771207 107.578233 25.771207 82.807026 54.2891165 1.734712774 0.19912 7 7 SH3553 3553 Tyr2 tRNA-exon/intron 36 55 26.771398 89.234025 58.0027115 1.763448296 0.19901 100 69 SH7959 7959 snoRNA cluster 2 5' 26.415766 112.346071 26.415766 86.930305 56.6730355 1.753376475 0.198953 17 55 SH5521 5521 snR32 3' 26.509998 87.539663 57.0248305 1.756064003 0.198948 101 52 SH4717 4717 snR4 snR4 121 135 227.171487 347.058062 287.1147745 2.458055541 0.198915 92 101 SH9791 9791 RUF4 RUF4 731 748 42.439111 117.125106 79.7821085 1.90190551 0.198711 145 45 SH10747 10747 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 621 634 96.550026 184.994079 140.7720525 2.148516443 0.198711 92 92 SH1481 1481 Leu2 3' flank 61.742206 141.175529 101.4588675 2.00629001 0.198666 56 32 SH2337 2337 Phe3 tRNA 11 25 532.408289 717.385255 624.896772 2.795808281 0.198496 43 3 SH10763 10763 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 701 719 25.414066 80.562761 52.9884135 1.724180917 0.198489 8 3 SH9230 9230 snR6 / U6 RNA U6 21 38 26.687421 88.733835 57.710628 1.7612558 0.198486 62 13 SH11420 11420 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3986 4004 12534.34453 11635.28426 12084.8144 4.082239985 0.198454 45 15 SH989 989 Gly2 5' flank 69.244545 150.526158 109.8853515 2.040939802 0.198445 82 49 SH9049 9049 snR17a / U3a 3' 25.521639 81.26041 53.3910245 1.727468254 0.198397 50 104 SH3913 3913 RNase MRP 5' 25.925565 83.850013 54.887789 1.739475737 0.198329 38 69 SH11820 11820 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5986 6002 51.328468 128.284097 89.8062825 1.953306719 0.198326 194 35 SH12101 12101 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7391 7409 40.907443 115.222646 78.0650445 1.892456612 0.198253 52 46 SH10220 10220 RUF6 RUF6 946 962 26.461269 87.290496 56.8758825 1.754928148 0.198211 28 47 SH20583 20583 YHR016C spliced 35.264322 108.159998 71.71216 1.855592804 0.198141 154 67 SH9169 9169 snR7 U5 RNA U5 116 132 28.846316 98.656115 63.7512155 1.80448847 0.198123 146 30 SH5255 5255 snR30 snR30 126 138 274.453712 405.352723 339.9032175 2.531355276 0.198101 110 53 SH21302 21302 YPL218W spliced 25.264567 79.65094 52.4577535 1.719809688 0.197985 108 17 SH5782 5782 snR35 snR35 96 108 62.77267 142.489123 102.6308965 2.011278123 0.197951 190 78 SH21634 21634 copy of SH8139 101.698194 191.659793 146.6789935 2.166367921 0.197919 134 42 SH11345 11345 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3611 3624 375.363916 529.769194 452.566555 2.655682456 0.197897 32 66 SH11104 11104 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2406 2423 72.333134 154.471535 113.4023345 2.054621995 0.197854 47 22 SH4601 4601 snR3 5' 73.742058 156.239024 114.990541 2.060662117 0.197703 122 31 SH4080 4080 SRP RNA SRP RNA 291 303 499.882623 679.386658 589.6346405 2.77058299 0.197656 179 9 SH5780 5780 snR35 snR35 86 103 25.59586 81.805158 53.700509 1.729978402 0.197613 167 3 SH562 562 Cys1 3' flank 26.788093 89.479284 58.1336885 1.764427879 0.197526 79 10 SH10967 10967 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1721 1739 710.15272 924.10126 817.12699 2.912289556 0.197502 83 31 SH7885 7885 snoRNA cluster1 snR73/intergenic 28.052768 122.475013 28.052768 95.422245 61.7375065 1.790549085 0.197493 153 96 SH17760 17760 YKL157W_11_154993_158183_INTRON_282_664 intron 27.463791 119.365805 27.463791 92.902014 60.1829025 1.779473129 0.197426 108 9 SH12214 12214 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 42.65991 159.138784 42.65991 117.478874 80.069392 1.903466531 0.197376 12 2 SH5931 5931 snR36 snR36 111 123 49.827132 126.49323 88.160181 1.945272473 0.197356 156 25 SH21178 21178 YNR053C spliced 81.441554 165.987314 123.714434 2.092420373 0.197319 100 83 SH20126 20126 YDL082W spliced 89.729655 176.473172 133.1014135 2.124182668 0.197308 167 42 SH15206 15206 MT COX3 cox3 26.614173 113.988911 26.614173 88.374738 57.4944555 1.759625965 0.197188 117 14 SH9104 9104 snR14 / U4 RNA U4 136 153 49.832727 126.51536 88.1740435 1.945340757 0.197124 74 21 SH8565 8565 snR19 / U1 RNA U1 321 338 41.004619 115.414046 78.2093325 1.893258579 0.197085 195 100 SH11157 11157 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2671 2684 1849.839902 2169.392282 2009.616092 3.3031131 0.197077 95 23 SH19413 19413 YPR098C_16_729525_728944_INTRON_48_143 3' exon 26.340821 111.975242 26.340821 86.634421 56.487621 1.751953285 0.196848 209 77 SH5828 5828 snR35 snR35 326 343 28.027474 95.3638 61.695637 1.790254453 0.19682 193 10 SH10968 10968 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1726 1743 797.766154 1024.414681 911.0904175 2.959561479 0.196775 24 36 SH11699 11699 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5381 5394 35260.79042 28934.79002 32097.79022 4.506475134 0.196759 11 87 SH14847 14847 MT tRNA Asp 3' 23.664643 92.82741 23.664643 70.162767 46.913705 1.671299733 0.196733 124 16 SH20998 20998 YML085C spliced 26.815018 89.732801 58.2739095 1.765474155 0.196687 3 69 SH12757 12757 MT COX1 COX1ai1 100.915809 290.716879 100.915809 190.80107 145.8584395 2.163931563 0.196655 20 37 SH5876 5876 snR35 3' 84.765268 170.283347 127.5243075 2.105592974 0.196653 195 13 SH21558 21558 copy of SH4784 26.2682 86.189537 56.2288685 1.749959344 0.196592 122 98 SH10655 10655 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 161 178 175.293332 283.546929 229.4201305 2.360631522 0.196581 86 32 SH21203 21203 YOL127W spliced 182.07826 291.990599 237.0344295 2.374811432 0.196494 210 91 SH4210 4210 telomerase RNA telomerase 86 103 26.591472 88.290605 57.4410385 1.759222283 0.196486 131 37 SH6486 6486 snR46 5' 27.187124 91.789675 59.4883995 1.774432285 0.196468 198 51 SH2916 2916 Pro8 101-105 + 3' flank 101 26.438236 87.302222 56.870229 1.754884977 0.196417 157 79 SH18318 18318 YML085C_13_99400_97941_INTRON_26_141 intron 31.3506 133.565892 31.3506 103.215292 67.282946 1.827904999 0.196388 127 93 SH21703 21703 copy of SH10878 16273.73609 14658.07261 15465.90435 4.18937532 0.196338 78 23 SH5015 5015 snR10 snR10 106 124 54.051287 131.833244 92.9422655 1.968213254 0.196289 146 41 SH5336 5336 snR30 snR30 531 547 26.960801 90.730015 58.845408 1.769712578 0.196274 82 32 SH17482 17482 YJL024C_10_396288_395627_INTRON_23_99 5' exon 54.214382 185.252152 54.214382 132.03777 93.126076 1.969071304 0.196273 36 80 SH14543 14543 MT 21S rRNA 21S rRNA3 25.594128 106.507567 25.594128 81.913439 53.7537835 1.730409038 0.196218 157 14 SH13555 13555 MT COX1 Exon 6 26.594333 113.928559 26.594333 88.334226 57.4642795 1.759397966 0.19621 194 2 SH5264 5264 snR30 snR30 171 185 26.58573 88.28457 57.43515 1.75917776 0.19614 140 103 SH10908 10908 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1426 1442 40176.51264 32469.83009 36323.17136 4.56018376 0.196091 120 104 SH3191 3191 Ser5 76-82 + 3' flank 76 27.603377 93.598492 60.6009345 1.782479321 0.196073 50 40 SH19110 19110 YOR312C_15_901173_900242_INTRON_2_427 intron 26.602598 114.005785 26.602598 88.403187 57.5028925 1.759689691 0.196043 142 103 SH19060 19060 YOR234C_15_779404_778554_INTRON_20_546 3' exon 47.97714 171.23264 47.97714 124.2555 86.11632 1.935085463 0.195987 136 41 SH9165 9165 snR7 U5 RNA U5 96 112 33.671437 106.303322 69.9873795 1.845019733 0.195948 85 84 SH11705 11705 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5411 5424 72.26503 154.548334 113.406682 2.054638644 0.195946 206 79 SH1106 1106 Gly4 tRNA 6 23 72.7124 155.107733 113.9100665 2.056562105 0.195946 163 99 SH1740 1740 Leu7 5' flank - tRNA10 10 586.833962 782.397907 684.6159345 2.835447003 0.195914 17 48 SH15766 15766 YCR097W_3_293828_294314_INTRON_106_159 5' exon 25.204707 103.659608 25.204707 79.454901 52.329804 1.718749108 0.195763 91 81 SH4728 4728 snR4 176-186 + 3' 176 26.324461 86.625818 56.4751395 1.751857312 0.195758 81 71 SH6652 6652 snR48 snR48 86 107 26.044993 84.833363 55.439178 1.743816782 0.195746 211 62 SH17325 17325 YIL004C_9_348502_347943_INTRON_12_142 intron 26.372884 112.315403 26.372884 86.942519 56.6577015 1.753258952 0.195712 73 43 SH7670 7670 snoRNA cluster1 snR78 27.507346 119.725728 27.507346 93.218382 60.362864 1.780769837 0.195646 32 17 SH17128 17128 YHR010W_8_126513_127484_INTRON_32_592 intron 95.772949 279.117612 95.772949 184.344663 140.058806 2.14631042 0.195618 110 68 SH9634 9634 RUF4 5' 31.592177 103.692158 67.6421675 1.830217516 0.195306 75 46 SH13882 13882 MT COB intronic 25.606208 106.676701 25.606208 82.070493 53.8383505 1.731091746 0.195298 198 6 SH19724 19724 Negative Control 28.60529 97.974036 63.289663 1.801332783 0.195276 10 98 SH3316 3316 Thr3 5' flank 28.491528 97.485724 62.988626 1.799262135 0.195225 182 96 SH14131 14131 MT COB intronic 26.705994 114.859637 26.705994 89.153643 57.9298185 1.762902168 0.195215 169 72 SH18858 18858 YNR053C_14_723108_721117_INTRON_811_1341 intron 26.1438 110.660454 26.1438 85.516654 55.830227 1.746869394 0.195161 189 16 SH8138 8138 snoRNA cluster 3; intergenic 45.451781 165.602784 45.451781 121.151003 83.301392 1.920652259 0.195156 162 79 SH12290 12290 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.799725 115.581611 26.799725 89.781886 58.2908055 1.765600057 0.195064 87 89 SH7469 7469 snR71 5' 27.672708 93.972095 60.8224015 1.784063564 0.195037 106 27 SH19474 19474 ADH1 38.652968 112.499567 75.5762675 1.87838544 0.195026 104 78 SH20001 20001 YBR078W spliced 29.588876 100.167437 64.8781565 1.812098501 0.194936 71 88 SH18511 18511 YMR201C_13_667043_665844_INTRON_28_111 5' exon 28.435532 124.708583 28.435532 97.273051 62.8542915 1.798334935 0.19484 195 10 SH13385 13385 MT COX1 Exon 5b 28.628452 125.738866 28.628452 98.110414 63.369433 1.801879821 0.194807 189 49 SH4477 4477 U3b (snR17b) 5' 25.980679 84.507208 55.2439435 1.742284672 0.194777 162 54 SH16000 16000 YDL137W_4_216158_217074_INTRON_1_332 intron 34.629693 141.190592 34.629693 107.560899 71.095296 1.851840867 0.194552 141 20 SH6396 6396 snR43 3' 24.971807 78.081165 51.526486 1.712030525 0.194522 152 69 SH7099 7099 snR63 snR63 1 23 58.078748 136.958146 97.518447 1.989086776 0.19446 100 79 SH5427 5427 snR31 snR31 201 217 26.129641 85.489648 55.8096445 1.746709256 0.194434 133 49 SH6019 6019 snR37 snR37 11 30 27.735351 94.287917 61.011634 1.785412656 0.194403 123 30 SH19890 19890 Positive Control 6 138.942071 238.929487 188.935779 2.276314209 0.19438 205 40 SH6228 6228 snR42 5' 26.827195 90.026255 58.426725 1.766611543 0.194372 67 50 SH18028 18028 YLR316C_12_766358_765266_INTRON_230_285 5' exon 29.180628 127.641678 29.180628 99.46105 64.320839 1.808351701 0.194355 120 29 SH4279 4279 telomerase RNA telomerase 431 448 26.407936 87.296415 56.8521755 1.754747088 0.194291 190 25 SH6172 6172 snR40 5' 26.111467 85.388446 55.7499565 1.746244533 0.194259 82 30 SH10878 10878 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1276 1289 15446.78806 14020.62816 14733.70811 4.168312062 0.194179 37 93 SH187 187 Arg2 51-65 51 65 58.579953 137.606891 98.093422 1.991639885 0.194175 10 11 SH3339 3339 Thr3 tRNA 41 58 69.604514 151.343432 110.473973 2.043259973 0.194115 161 93 SH8327 8327 snoRNA cluster4 intergenic 61.84637 202.491153 61.84637 141.644783 101.7455765 2.007515537 0.194107 158 91 SH12450 12450 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.772754 139.303234 33.772754 106.53048 70.151617 1.846037686 0.193988 67 22 SH184 184 Arg2 36-52 36 52 70.449849 152.429478 111.4396635 2.047039792 0.193964 184 67 SH11008 11008 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1926 1939 12747.59137 11843.86208 12295.72673 4.089754202 0.193945 57 45 SH4374 4374 telomerase RNA telomerase 906 922 31.503038 103.622895 67.5629665 1.82970871 0.193821 109 104 SH8083 8083 snoRNA cluster 2 3' 25.754823 107.909787 25.754823 83.154964 54.4548935 1.736036913 0.193818 35 93 SH5826 5826 snR35 snR35 316 333 26.52196 88.086047 57.3040035 1.758184965 0.193745 26 48 SH11091 11091 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2341 2354 1030.288415 1288.055308 1159.171862 3.06414783 0.193647 50 36 SH2099 2099 Lys4 3' flank 28.666226 98.36636 63.516293 1.802885143 0.193611 119 98 SH1067 1067 Gly3 71 + 3' flank 71 23.754806 70.899445 47.3271255 1.675110128 0.193584 46 56 SH867 867 Glu2 3' flank 27.147295 91.8275 59.4873975 1.774424969 0.193581 27 2 SH17352 17352 YIL018W_9_316766_317930_INTRON_5_404 intron/exon 27.343253 119.010096 27.343253 92.666843 60.005048 1.778187787 0.193571 196 90 SH11294 11294 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3356 3369 46.462274 122.510053 84.4861635 1.926785589 0.193473 115 94 SH5927 5927 snR36 snR36 91 108 57.263144 136.002905 96.6330245 1.985125573 0.193462 123 37 SH11121 11121 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2491 2507 37.840887 111.60566 74.7232735 1.873455889 0.193446 32 21 SH459 459 Asp1 3' flank 25.82195 83.612933 54.7174415 1.738125782 0.193438 106 91 SH19505 19505 ACT1 24.880292 77.593053 51.2366725 1.709580917 0.193432 148 38 SH9497 9497 RUF2 3' 29.600711 100.268788 64.9347495 1.812477169 0.193431 99 48 SH21172 21172 YNL312W spliced 111.621049 204.824873 158.222961 2.199269508 0.193417 29 90 SH7806 7806 snoRNA cluster1 snR75/intergenic 25.283615 104.43938 25.283615 80.155765 52.71969 1.721972848 0.1934 37 98 SH1799 1799 Leu8 tRNA 21 37 44.131264 119.597796 81.86453 1.913095773 0.193376 123 13 SH18388 18388 YMR116C_13_500687_499455_INTRON_538_810 intron 25.848632 108.642603 25.848632 83.793971 54.8213015 1.738949342 0.193303 129 57 SH438 438 Asp1 tRNA 11 27 1187.956417 1463.341357 1325.648887 3.122428512 0.193201 164 18 SH6566 6566 snR47 5' 41.850147 116.712256 79.2812015 1.899170223 0.193181 168 85 SH19972 19972 YBL072C spliced 30.416989 101.750951 66.08397 1.820096125 0.19303 35 60 SH20087 20087 YDL012C spliced 75.086622 158.320056 116.703339 2.067083282 0.192974 98 28 SH10405 10405 RUF8 5' 28.165236 96.247466 62.206351 1.793834727 0.192963 128 93 SH21519 21519 copy of SH3380 25.574066 82.06308 53.818573 1.730932178 0.192961 108 26 SH5555 5555 snR33 snR33 61 77 52.040181 129.531349 90.785765 1.958017757 0.192877 155 86 SH10917 10917 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1471 1487 162.525363 268.371457 215.44841 2.333343293 0.192849 18 3 SH12730 12730 MT COX1 Exon1 25.431867 105.5874 25.431867 81.155533 53.2937 1.726675873 0.192832 62 45 SH18666 18666 YNL112W_14_413636_416278_INTRON_1274_2275 intron 26.966424 117.054766 26.966424 91.088342 59.027383 1.771053529 0.192831 195 90 SH9140 9140 snR7 U5 RNA 5' 24.186916 73.444281 48.8155985 1.688558618 0.192779 93 74 SH21324 21324 YPR028W spliced 24.944947 78.058371 51.501659 1.711821219 0.192725 97 76 SH4705 4705 snR4 snR4 61 76 30.331741 101.616996 65.9743685 1.819375242 0.192702 77 38 SH6245 6245 snR42 snR42 6 23 47.553721 123.929041 85.741381 1.933190474 0.192663 199 55 SH21015 21015 YMR033W spliced 28.639475 98.324191 63.481833 1.802649458 0.192653 20 39 SH8776 8776 LSR1 / U2 RNA U2 521 537 25.436218 81.199389 53.3178035 1.72687225 0.192646 195 45 SH7206 7206 snR64 96-101 + 3' 96 39.753722 114.064725 76.9092235 1.885978427 0.192639 75 12 SH10638 10638 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 76 89 79.539625 164.045439 121.792532 2.085620659 0.192497 101 64 SH11247 11247 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3121 3138 34882.23341 28741.04364 31811.63853 4.502586039 0.192493 32 92 SH18514 18514 YMR201C_13_667043_665844_INTRON_28_111 intron 27.038368 117.479769 27.038368 91.441401 59.2398845 1.772614203 0.192475 100 37 SH20723 20723 YJL177W spliced 31.682736 103.952351 67.8175435 1.831342055 0.192461 26 63 SH8937 8937 snR17a / U3a 5' 26.543242 88.344028 57.443635 1.759241914 0.192427 161 39 SH7981 7981 snoRNA cluster 2 snR57 77.495566 237.957528 77.495566 161.461962 119.478764 2.077290721 0.192392 35 94 SH912 912 Glu3 71-72 + 3' flank 71 24.405368 74.752317 49.5788425 1.695296383 0.192313 124 88 SH16018 16018 YDL189W_4_122079_123590_INTRON_1_99 5' exon 28.619804 125.903184 28.619804 98.28338 63.451592 1.802442523 0.192075 203 66 SH8450 8450 snoRNA cluster 5 snR128 40.857411 155.377946 40.857411 115.520535 78.188973 1.893145509 0.192022 13 10 SH10444 10444 RUF8 RUF8 146 162 81.121494 166.079074 123.600284 2.092019469 0.192016 45 33 SH6903 6903 snR56 3' 27.365983 92.893313 60.129648 1.779088661 0.191798 71 85 SH11435 11435 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4061 4078 76.969542 160.850126 118.909834 2.075217773 0.191726 147 83 SH4024 4024 SRP RNA SRP RNA 11 23 42.210406 117.251195 79.7308005 1.901626124 0.191721 40 79 SH4157 4157 SRP RNA 3' 29.117583 99.489364 64.3034735 1.808234433 0.191652 136 22 SH18393 18393 YMR125W_13_517538_520445_INTRON_26_347 5' exon 26.676425 114.964068 26.676425 89.287643 57.982034 1.763293446 0.191634 103 94 SH8094 8094 snoRNA cluster 2 3' 40.119625 153.716527 40.119625 114.596902 77.3582635 1.888506712 0.191615 115 18 SH18757 18757 YNL162W_14_331319_332151_INTRON_5_516 intron 26.676116 114.96502 26.676116 89.288904 57.98251 1.763297012 0.191598 86 53 SH16360 16360 YEL012W_5_131772_132551_INTRON_6_128 exon/intron 40.055209 153.573182 40.055209 114.517973 77.286591 1.888104152 0.191541 188 49 SH12813 12813 MT COX1 COX1ai1 25.882587 109.044959 25.882587 84.162372 55.0224795 1.740540157 0.191535 71 62 SH7900 7900 snoRNA cluster1 intergenic 26.335324 112.408374 26.335324 87.07305 56.704187 1.753615128 0.191527 148 68 SH6013 6013 snR37 5' 24.718573 76.736275 50.727424 1.705242809 0.191463 39 5 SH10887 10887 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1321 1336 151.470777 254.906639 203.188708 2.307899569 0.191412 95 81 SH14459 14459 MT 21S rRNA 21S rRNA3 26.528342 113.872472 26.528342 88.34413 57.436236 1.759185971 0.191353 208 53 SH4864 4864 snR8 snR8 101 116 28.397095 97.373309 62.885202 1.79854846 0.191348 82 19 SH15392 15392 YBL040C_2_142830_142074_INTRON_23_119 intron 29.957418 129.979488 29.957418 101.02207 65.489744 1.816173293 0.191327 183 4 SH6097 6097 snR37 3' 26.339286 87.116819 56.7280525 1.753797874 0.191325 85 57 SH8172 8172 snoRNA cluster 3; snR70 24.403943 98.224598 24.403943 74.820655 49.612299 1.695589352 0.191297 158 27 SH11854 11854 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6156 6176 51.312602 128.73163 90.022116 1.954349217 0.19129 139 26 SH8489 8489 snR19 / U1 RNA 5' 25.243215 80.079964 52.6615895 1.721493963 0.191219 100 30 SH18481 18481 YMR143W_13_551927_552902_INTRON_25_568 3' exon 39.836547 153.093361 39.836547 114.256814 77.0466805 1.886753932 0.191164 133 96 SH8813 8813 LSR1 / U2 RNA U2 706 718 4474.744196 4733.842097 4604.293147 3.663162967 0.191152 65 52 SH12228 12228 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 120.562187 335.987638 120.562187 216.425451 168.493819 2.226583974 0.191138 28 78 SH1826 1826 Leu8 3' flank 25.432645 81.309567 53.371106 1.727306203 0.191079 198 8 SH5485 5485 snR32 snR32 86 103 26.381241 87.411981 56.896611 1.755086399 0.191069 126 14 SH18473 18473 YMR143W_13_551927_552902_INTRON_25_568 intron 27.113941 117.982501 27.113941 91.86856 59.4912505 1.774453098 0.191031 157 58 SH8690 8690 LSR1 / U2 RNA U2 91 112 26.893519 90.774924 58.8342215 1.769630011 0.191018 148 35 SH17664 17664 YKL006C-A_11_430270_429836_INTRON_37_177 5' exon 29.86968 129.751947 29.86968 100.882267 65.3759735 1.815418169 0.190999 190 49 SH6642 6642 snR48 snR48 36 52 28.253673 96.781711 62.517692 1.796002937 0.190958 101 85 SH8550 8550 snR19 / U1 RNA U1 246 258 49.670662 126.718421 88.1945415 1.945441707 0.190927 105 32 SH4275 4275 telomerase RNA telomerase 411 425 27.265173 92.526738 59.8959555 1.777397497 0.190893 126 50 SH6099 6099 snR37 3' 27.939875 95.431279 61.685577 1.790183631 0.190876 182 82 SH14242 14242 MT tRNA Ser tRNA 53.218876 183.38171 53.218876 131.162834 92.190855 1.964687843 0.190861 20 78 SH19820 19820 Negative Control 82.425571 167.843531 125.134551 2.09737724 0.190857 185 70 SH5313 5313 snR30 snR30 416 433 25.647554 82.731546 54.18955 1.733915545 0.190743 19 62 SH19889 19889 Positive Control 5 44.601428 120.355578 82.478503 1.91634077 0.190718 170 3 SH9605 9605 RUF3 RUF3 411 430 27.1157 91.89972 59.50771 1.774573238 0.190704 181 50 SH3974 3974 RNase MRP RNaseMRP 286 298 156.404543 261.138046 208.7712945 2.319670784 0.19066 29 20 SH5036 5036 snR10 snR10 211 223 194.883989 308.9696 251.9267945 2.401274361 0.190563 117 51 SH7607 7607 snR189 snR189 106 124 25.75218 83.417669 54.5849245 1.737072714 0.190547 203 43 SH20471 20471 YGL187C spliced 149.894831 253.077883 201.486357 2.304245645 0.190529 140 94 SH21303 21303 YPL218W spliced 30.439531 101.926931 66.183231 1.820747965 0.190517 11 49 SH12933 12933 MT COX1 COX1ai2 85.652801 256.659242 85.652801 172.006441 128.829621 2.110015729 0.190508 150 26 SH3466 3466 Trp1 3' flank 107.695046 200.153543 153.9242945 2.187307172 0.190485 53 30 SH20145 20145 YDL115C spliced 37.568815 111.437526 74.5031705 1.872174755 0.19045 166 83 SH6014 6014 snR37 5' - 5 -14 5 24.560954 75.834749 50.1978515 1.700685129 0.190416 204 60 SH17165 17165 YHR016C_8_138446_136872_INTRON_48_215 intron 35.376651 143.090922 35.376651 108.714271 72.045461 1.857606625 0.190375 148 67 SH21733 21733 copy of SH12133 30.978556 102.89059 66.934573 1.825650497 0.190368 140 95 SH5926 5926 snR36 snR36 86 104 1108.652533 1378.171581 1243.412057 3.094615074 0.19035 64 30 SH4653 4653 snR3 181-195 + 3' 181 26.194107 86.265585 56.229846 1.749966894 0.190335 211 59 SH15338 15338 YAL030W_1_87288_87754_INTRON_103_215 intron 26.336339 112.523424 26.336339 87.187085 56.761712 1.754055486 0.190325 51 21 SH15760 15760 YCR031C_3_178212_177492_INTRON_8_314 intron 27.054824 117.721362 27.054824 91.666538 59.360681 1.773498875 0.190321 139 40 SH11005 11005 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1911 1928 27274.18441 23180.02397 25227.10419 4.401867401 0.190242 113 58 SH4273 4273 telomerase RNA telomerase 401 418 26.434609 87.83944 57.1370245 1.75691762 0.190175 73 57 SH1908 1908 Lys1 5' flank - tRNA12 12 48.771706 125.637216 87.204461 1.940538702 0.190174 9 100 SH6471 6471 snR45 3' 26.665255 89.348499 58.006877 1.763479484 0.19017 19 96 SH15325 15325 YAL003W_1_142172_143158_INTRON_81_446 intron 23.865473 94.647518 23.865473 71.782045 47.823759 1.679643709 0.190126 33 63 SH18434 18434 YMR142C_13_551206_550205_INTRON_5_406 intron 27.338054 119.234096 27.338054 92.896042 60.117048 1.778997647 0.190116 51 56 SH10613 10613 RUF8 3' 32.22692 104.775404 68.501162 1.835697939 0.190065 111 104 SH4002 4002 SRP RNA 5' 29.101503 99.545004 64.3232535 1.808368003 0.190046 170 73 SH9878 9878 RUF5-1 RUF5-1 196 210 28.161659 96.452732 62.3071955 1.794538204 0.190043 211 80 SH1969 1969 Lys2 tRNA 46 60 764.472255 990.933629 877.702942 2.943347554 0.190029 5 84 SH6312 6312 snR42 341-351 + 3' 341 26.734656 89.82914 58.281898 1.765533687 0.189907 123 101 SH5833 5833 snR35 snR35 351 368 26.333477 87.207595 56.770536 1.754122995 0.189888 33 40 SH12008 12008 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6926 6946 26.605179 88.985289 57.795234 1.761892026 0.189831 114 17 SH8704 8704 LSR1 / U2 RNA U2 161 178 26.836821 90.511292 58.6740565 1.768446115 0.18982 138 22 SH6271 6271 snR42 snR42 136 152 24.89716 77.998158 51.447659 1.711365618 0.189762 3 75 SH1107 1107 Gly4 tRNA 11 27 27.50136 93.624818 60.563089 1.782208018 0.18975 81 75 SH6007 6007 snR37 5' 25.938693 84.678584 55.3086385 1.742792968 0.189712 67 71 SH11497 11497 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4371 4387 53.19681 131.224142 92.210476 1.964780264 0.189564 43 72 SH10925 10925 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1511 1528 32649.35314 27169.40678 29909.37996 4.47580741 0.189462 53 2 SH12439 12439 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.348491 136.313145 32.348491 104.964654 68.6565725 1.836682119 0.189409 166 31 SH15752 15752 YCR031C_3_178212_177492_INTRON_8_314 intron 62.365531 203.99762 62.365531 142.632089 102.49881 2.010718823 0.189407 170 93 SH7677 7677 snoRNA cluster1 snR78/intergenic 25.404179 105.674795 25.404179 81.270616 53.3373975 1.727031821 0.189376 24 33 SH5328 5328 snR30 snR30 491 507 29.193962 99.751911 64.4729365 1.809377451 0.189311 117 48 SH4631 4631 snR3 snR3 71 88 34.844768 108.098917 71.4718425 1.854134978 0.189291 31 81 SH11723 11723 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5501 5517 27.98953 95.765049 61.8772895 1.791531281 0.189287 26 43 SH19880 19880 Negative Control 28.400323 97.54677 62.9735465 1.799158152 0.189262 33 53 SH19213 19213 YPL081W_16_404945_406039_INTRON_8_508 intron 32.912509 137.605598 32.912509 105.693089 69.302799 1.840750775 0.189228 47 56 SH21511 21511 copy of SH2856 31.223394 103.384922 67.304158 1.828041895 0.189223 175 40 SH16779 16779 YGL103W_7_310965_311925_INTRON_50_560 intron 27.256969 118.869838 27.256969 92.612869 59.934919 1.777679923 0.189222 210 66 SH10044 10044 RUF6 RUF6 66 85 25.797684 83.821647 54.8096655 1.738857152 0.189211 120 3 SH1832 1832 Leu9 5' flank 26.983673 91.44419 59.2139315 1.772423897 0.189174 101 73 SH17021 17021 YGR148C_7_788173_787307_INTRON_1_392 intron 26.173433 111.411135 26.173433 86.237702 56.2055675 1.749779337 0.189142 210 32 SH19895 19895 snR17A spliced 72.497694 155.421222 113.959458 2.056750375 0.189121 29 6 SH11197 11197 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2871 2891 41.577363 116.60701 79.0921865 1.898133582 0.189102 133 52 SH17464 17464 YIL148W_9_68708_69528_INTRON_9_442 intron 25.765522 108.392439 25.765522 83.626917 54.6962195 1.73795731 0.189095 9 19 SH5668 5668 snR34 snR34 261 280 25.697607 83.200039 54.448823 1.735988496 0.18904 213 85 SH11159 11159 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S/ITS1 2681 2703 28.344656 97.32625 62.835453 1.79820475 0.188986 187 37 SH4682 4682 snR4 5' 26.410682 87.791316 57.100999 1.756643706 0.188979 91 12 SH12484 12484 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 27.857061 122.073933 27.857061 95.216872 61.5369665 1.789136084 0.188961 9 102 SH18260 18260 YML056C_13_164176_162194_INTRON_461_868 intron 22.995423 88.981498 22.995423 66.986075 44.990749 1.653123223 0.188851 9 11 SH19529 19529 CBP1 1.2 25.020926 78.859102 51.940014 1.715502062 0.188837 141 14 SH13905 13905 MT COB Exon3 78.87231 241.409341 78.87231 163.537031 121.2046705 2.083519355 0.188824 172 14 SH125 125 Arg1 1-13 1 13 35.508983 108.967574 72.2382785 1.858767388 0.188763 2 21 SH9592 9592 RUF3 RUF3 346 360 39.105088 113.444881 76.2749845 1.882382128 0.188697 50 99 SH701 701 Gln3 tRNA 36 48 39.160551 113.5234 76.3419755 1.882763394 0.188595 44 53 SH243 243 Arg3 71-72 + 3' flank 71 3' flank 24.875066 77.954374 51.41472 1.711087475 0.188586 38 87 SH5543 5543 snR33 snR33 1 17 28.742297 98.97512 63.8587085 1.805220131 0.188424 69 24 SH290 290 Arg4 46-58 46 58 46.811839 123.260328 85.0360835 1.92960325 0.188375 95 61 SH2025 2025 Lys3 tRNA 71 83 84.522942 170.774664 127.648803 2.106016747 0.18836 143 3 SH21484 21484 copy of SH1850 39.631384 114.153419 76.8924015 1.885883425 0.188327 9 50 SH5571 5571 snR33 snR33 141 158 25.666625 83.069156 54.3678905 1.735342482 0.18827 199 38 SH10981 10981 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1791 1809 93.960312 182.822356 138.391334 2.141108896 0.188265 208 27 SH6660 6660 snR48 3' 591.430672 791.8016 691.616136 2.839865117 0.188058 90 11 SH1011 1011 Gly2 tRNA 46 58 29.85513 101.014701 65.4349155 1.815809546 0.18804 67 8 SH6247 6247 snR42 snR42 16 28 73.903079 157.273568 115.5883235 2.062913965 0.188016 96 31 SH2278 2278 Phe2 5' flank - tRNA4 4 34.622788 107.895308 71.259048 1.852840016 0.187969 83 93 SH20243 20243 YDR367W spliced 25.652314 83.006238 54.329276 1.735033918 0.187932 159 82 SH19563 19563 CBP1 2.2 221.584797 342.536932 282.0608645 2.450342833 0.187899 174 28 SH8988 8988 snR17a / U3a U3a 226 242 31.047588 103.151003 67.0992955 1.82671796 0.187835 57 75 SH3559 3559 Tyr2 tRNA 66 78 47.362505 123.994394 85.6784495 1.932871599 0.187817 162 77 SH445 445 Asp1 tRNA 46 60 51.555138 129.265974 90.410556 1.95621914 0.187748 184 89 SH6872 6872 snR56 5' - 11 -9 11 24.570805 76.113839 50.342322 1.701933243 0.187678 65 26 SH19164 19164 YPL075W_16_412249_415357_INTRON_9_759 intron/exon 29.711812 129.48782 29.711812 100.776008 65.24391 1.81453998 0.187677 89 89 SH6493 6493 snR46 5' 44.671615 120.631306 82.6514605 1.917250532 0.187668 78 3 SH19902 19902 snR17B spliced 57.513102 136.739574 97.126338 1.987337015 0.187656 35 59 SH1592 1592 Leu4 3' flank 42.01408 117.246729 79.6304045 1.901078922 0.18761 21 104 SH5509 5509 snR32 3' 24.75233 77.263351 51.0078405 1.707636937 0.187553 132 11 SH19372 19372 YPR043W_16_654161_654842_INTRON_3_405 5' exon 2026.667798 4392.655199 2026.667798 2366.987401 2196.8276 3.341795976 0.187429 123 33 SH8678 8678 LSR1 / U2 RNA U2 31 49 30.508407 102.217783 66.363095 1.821926632 0.187412 53 58 SH6832 6832 snR52 snR52 66 83 29.20958 99.884943 64.5472615 1.809877821 0.187336 132 16 SH20394 20394 YFL039C spliced 38.126187 112.289475 75.207831 1.876263064 0.18729 21 76 SH7117 7117 snR63 snR63 91 112 26.700437 89.84651 58.2734735 1.765470906 0.187271 39 101 SH12763 12763 MT COX1 COX1ai1 29.497368 128.908133 29.497368 100.410765 64.9540665 1.812606346 0.187263 188 42 SH1287 1287 Ile2 131-133 + 3' flank 131 150 26.195803 86.553254 56.3745285 1.751082923 0.187214 104 7 SH10977 10977 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1771 1790 88.618199 176.108637 132.363418 2.121767973 0.186916 126 26 SH14740 14740 MT tRNA cys; tRNA his 3' 26.756053 116.004632 26.756053 90.248579 58.502316 1.767173059 0.186895 54 90 SH3072 3072 Ser3 tRNA 56 71 37.563505 111.625553 74.594529 1.872706976 0.186887 204 45 SH3694 3694 Val3 5' flank 26.764964 90.309951 58.5374575 1.767433855 0.186868 169 41 SH21724 21724 copy of SH11919 68.497041 150.527739 109.51239 2.039463257 0.186861 137 23 SH13801 13801 MT COB intronic 24.817265 101.550973 24.817265 77.733708 51.2754865 1.70990979 0.186807 85 93 SH602 602 Gln1 tRNA 51 65 31.190175 103.459825 67.325 1.828176362 0.186792 38 23 SH800 800 Glu1 tRNA 16 30 1836.348815 2169.919611 2003.134213 3.301710049 0.186765 58 89 SH6457 6457 snR45 snR45 131 148 118.007841 213.752603 165.880222 2.219794608 0.186751 76 84 SH20491 20491 YGL251C spliced 31.996849 104.648932 68.3228905 1.834566232 0.186709 157 44 SH6723 6723 snR49 snR49 141 158 45.814942 122.129982 83.972462 1.924136887 0.186666 71 67 SH10155 10155 RUF6 RUF6 621 641 25.762101 83.82301 54.7925555 1.738721556 0.186558 37 19 SH20549 20549 YGR225W spliced 26.491516 88.542307 57.5169115 1.759795558 0.186515 160 46 SH21741 21741 copy of SH12551 26.571135 89.066536 57.8188355 1.762069341 0.186495 156 53 SH7931 7931 snoRNA cluster1 snR72 30.778989 132.52928 30.778989 102.750291 66.76464 1.824546512 0.186466 79 36 SH1323 1323 Ile3 5' flank - tRNA12 12 29.785018 100.974389 65.3797035 1.815442947 0.186437 196 18 SH4938 4938 snR9 snR9 96 113 25.946088 85.01483 55.480459 1.744140045 0.186394 125 69 SH4560 4560 U3b (snR17b) U3b 356 375 26.325218 87.470391 56.8978045 1.755095509 0.186356 30 93 SH14877 14877 MT tRNA Ala 5' 24.936732 102.470452 24.936732 78.53372 51.735226 1.713786351 0.186286 108 3 SH8368 8368 snoRNA cluster 5 5' 36.844231 146.619589 36.844231 110.775358 73.8097945 1.868113996 0.186228 185 50 SH9331 9331 RUF1 RUF1 231 247 27.559956 94.142576 60.851266 1.784269618 0.18615 34 20 SH12431 12431 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.115707 111.246558 26.115707 86.130851 56.123279 1.749143037 0.186132 29 84 SH2812 2812 Pro6 3' flank 25.715304 83.562589 54.6389465 1.737502317 0.186118 125 17 SH12960 12960 MT COX1 COX1ai2 36.544746 145.955597 36.544746 110.410851 73.4777985 1.866156136 0.186089 141 96 SH17545 17545 YJL177W_10_90783_91654_INTRON_310_626 intron 26.768276 116.174608 26.768276 90.406332 58.587304 1.767803514 0.186065 197 21 SH6524 6524 snR46 snR46 111 128 25.878441 84.635741 55.257091 1.742388018 0.185762 188 28 SH5626 5626 snR34 snR34 51 68 26.378065 87.868973 57.123519 1.756814954 0.185756 88 80 SH802 802 Glu1 tRNA 26 40 31.731634 104.356121 68.0438775 1.832789054 0.185703 125 49 SH4078 4078 SRP RNA SRP RNA 281 296 38.044557 112.281924 75.1632405 1.876005495 0.185623 114 94 SH4715 4715 snR4 snR4 111 123 72.247522 155.40635 113.826936 2.056245046 0.185612 101 104 SH2999 2999 Ser2 5' flank 24.766681 77.511462 51.1390715 1.708752839 0.185607 140 53 SH16163 16163 YDR129C_4_715372_713333_INTRON_22_132 3' exon 24.481425 99.205624 24.481425 75.724199 50.102812 1.699862101 0.185552 106 96 SH20407 20407 YFR031C-A spliced 28.170517 96.834954 62.5027355 1.795899025 0.185509 175 13 SH20484 20484 YGL226C-A spliced 29.908112 101.247435 65.5777735 1.816756667 0.18548 33 45 SH13079 13079 MT COX1 COX1ai3 28.349719 124.969386 28.349719 97.619667 62.984693 1.799235017 0.185438 43 46 SH2289 2289 Phe2 tRNA-intron/exon 41 58 26.643901 89.650458 58.1471795 1.764528654 0.185351 123 15 SH6677 6677 snR49 5' 26.767957 90.470462 58.6192095 1.768039958 0.185351 183 96 SH13909 13909 MT COB Cytbi3 26.680139 115.570651 26.680139 89.890512 58.2853255 1.765559226 0.185341 19 2 SH11322 11322 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3496 3513 33798.02436 28086.08929 30942.05683 4.490549179 0.18523 127 54 SH8779 8779 LSR1 / U2 RNA U2 536 548 27.93478 95.835005 61.8848925 1.791584641 0.185202 12 65 SH13713 13713 MT tRNAGlu (and 5' processing site for COB) 3' 28.473436 125.65266 28.473436 98.179224 63.32633 1.80158432 0.185167 16 23 SH19728 19728 Negative Control 39.381818 114.009718 76.695768 1.884771401 0.185158 196 8 SH7865 7865 snoRNA cluster1 intergenic/snR73 26.43654 113.744966 26.43654 88.308426 57.372483 1.758703646 0.185124 11 83 SH969 969 Gly1 3' flank 26.341026 87.687107 57.0140665 1.755982018 0.185091 195 85 SH7821 7821 snoRNA cluster1 intergenic 26.401479 113.483609 26.401479 88.08213 57.2418045 1.757713316 0.185089 9 43 SH4488 4488 U3b (snR17b) 5' - 13 13 27.862805 95.53304 61.6979225 1.790270541 0.185068 141 98 SH15832 15832 YDL075W_4_322225_322987_INTRON_58_478 intron 34.470471 141.329247 34.470471 107.858776 71.1646235 1.852264156 0.185067 100 100 SH13059 13059 MT COX1 COX1ai2 53.899274 185.320771 53.899274 132.421497 93.1603855 1.969231277 0.18504 214 5 SH9222 9222 snR6 / U6 RNA 5' 25.783679 84.095117 54.939398 1.739883896 0.184999 212 68 SH6117 6117 snR39B 5' 25.365768 81.395941 53.3808545 1.727385522 0.184983 92 28 SH10914 10914 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1456 1469 31.092088 103.386252 67.23917 1.827622344 0.184978 170 34 SH11210 11210 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2936 2952 33.337727 106.454054 69.8958905 1.844451642 0.184879 23 74 SH8194 8194 snoRNA cluster 3; intergenic 25.835215 109.271297 25.835215 84.436082 55.1356485 1.741432487 0.18487 210 72 SH21757 21757 copy of SH13182 26.465112 88.521776 57.493444 1.759618325 0.184836 71 49 SH21728 21728 copy of SH11923 35.419343 109.065506 72.2424245 1.858792313 0.184799 172 97 SH3385 3385 Thr4 tRNA 11 25 61.088659 141.417689 101.253174 2.005408646 0.184772 35 83 SH17285 17285 YHR141C_8_382752_381991_INTRON_5_445 intron 25.622172 107.70706 25.622172 83.084888 54.35353 1.735227755 0.184758 37 49 SH12375 12375 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.252816 112.397607 26.252816 87.144791 56.6988035 1.753573894 0.184729 151 71 SH1199 1199 Ile1 5' flank 37.31155 111.434588 74.373069 1.871415703 0.184718 73 96 SH2348 2348 Phe3 tRNA 66 80 28.142863 96.782141 62.462502 1.795619376 0.184622 9 91 SH12486 12486 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 24.965103 102.818504 24.965103 78.853401 51.909252 1.715244771 0.184597 134 32 SH15534 15534 YBR078W_2_393082_394818_INTRON_59_388 exon/intron 28.868905 127.279046 28.868905 99.410141 64.139523 1.807125726 0.184563 160 101 SH13333 13333 MT COX1 COX1-ai5a 301.171054 742.368326 301.171054 442.197272 371.684163 2.570174057 0.184548 91 39 SH6628 6628 snR48 5' 24.007169 73.014987 48.511078 1.685840926 0.184459 99 93 SH10798 10798 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS/18S 876 897 30.798834 102.895387 66.8471105 1.825082639 0.184453 13 30 SH21425 21425 Trp1 spliced 298.355329 438.693492 368.5244105 2.56646626 0.184446 45 38 SH7773 7773 snoRNA cluster1 intergenic 46.138623 167.810706 46.138623 122.672083 84.405353 1.926369991 0.184443 142 50 SH1919 1919 Lys1 tRNA 51 63 34.528456 107.965119 71.2467875 1.852765287 0.184402 20 75 SH15104 15104 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 26.733549 116.065093 26.733549 90.331544 58.5325465 1.767397419 0.184391 105 56 SH19113 19113 YOR312C_15_901173_900242_INTRON_2_427 3' exon 27.609516 121.09646 27.609516 94.486944 61.04823 1.785673077 0.184391 8 16 SH10851 10851 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1141 1161 862.14396 1106.208073 984.1760165 2.993072777 0.184248 183 23 SH14236 14236 MT tRNA Ser 5' 40.436159 154.869021 40.436159 115.432862 77.9345105 1.891729812 0.184226 153 45 SH407 407 Asn1 3' flank 27.133928 92.450545 59.7922365 1.776644798 0.18417 125 60 SH1724 1724 Leu7 5' flank 27.350189 93.385194 60.3676915 1.780804568 0.184137 125 6 SH19882 19882 Negative Control 26.827491 90.979252 58.9033715 1.770140154 0.184129 44 21 SH4573 4573 U3b (snR17b) U3b 421 436 428.275293 599.206821 513.741057 2.710744275 0.184126 5 12 SH11621 11621 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4991 5006 29.002096 99.680734 64.341415 1.808490608 0.184052 204 91 SH8344 8344 snoRNA cluster4 snR53 32.309177 136.498464 32.309177 105.189287 68.749232 1.837267851 0.183993 184 20 SH11660 11660 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5186 5199 42.558913 118.149318 80.3541155 1.905008125 0.183938 193 19 SH4848 4848 snR8 snR8 21 37 51.93021 130.000688 90.965449 1.958876468 0.183907 193 28 SH21421 21421 Trp1 spliced 61.967718 142.565736 102.266727 2.009734357 0.183869 163 29 SH7323 7323 snR66 3' 25.835889 84.528401 55.182145 1.741798578 0.183855 21 17 SH4943 4943 snR9 snR9 121 137 29.049172 99.778073 64.4136225 1.808977724 0.183838 71 28 SH5844 5844 snR35 snR35 406 425 26.677561 90.012905 58.345233 1.766005379 0.18383 80 94 SH1463 1463 Leu2 tRNA 86 102 53.794009 132.373229 93.083619 1.96887326 0.183827 101 68 SH11396 11396 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3866 3883 30556.95555 25726.8314 28141.89347 4.449353315 0.183745 49 94 SH14636 14636 MT 21S rRNA Sce1 endonuc 25.709763 108.442936 25.709763 83.733173 54.721468 1.73815774 0.183718 203 71 SH13039 13039 MT COX1 COX1ai2 24.538174 99.764172 24.538174 76.225998 50.382086 1.702276145 0.183707 134 85 SH1055 1055 Gly3 tRNA 11 29 68.207852 150.420692 109.314272 2.038676867 0.183684 130 66 SH697 697 Gln3 tRNA 16 32 27.929258 95.932239 61.9307485 1.791906329 0.183591 141 28 SH15787 15787 YDL029W_4_399336_400634_INTRON_23_145 intron 25.517694 107.023648 25.517694 82.505954 54.011824 1.732488844 0.183558 157 66 SH16373 16373 YER003C_5_159117_157735_INTRON_32_124 intron 24.576914 100.060295 24.576914 76.483381 50.5301475 1.703550566 0.183528 86 16 SH760 760 Gln4 71-72 + 3' flank 71 27.73574 95.103734 61.419737 1.788307952 0.183446 55 60 SH1005 1005 Gly2 tRNA 16 34 26.33307 87.786041 57.0595555 1.756328384 0.183414 136 72 SH10014 10014 RUF6 5' 25.334816 81.33156 53.333188 1.726997544 0.183384 124 99 SH7847 7847 snoRNA cluster1 snR74 30.052274 130.674748 30.052274 101.622474 65.837374 1.8184725 0.18333 118 73 SH16097 16097 YDR059C_4_569765_569229_INTRON_48_137 exon/intron 461.741757 1100.719159 461.741757 639.977402 550.8595795 2.741040906 0.183328 60 69 SH18152 18152 YLR406C_12_931752_931062_INTRON_58_406 3' exon 36.955531 147.029996 36.955531 111.074465 74.014998 1.869319732 0.183258 62 18 SH8440 8440 snoRNA cluster 5 snR128 317.853064 780.275029 317.853064 463.421965 390.6375145 2.591773948 0.183229 33 82 SH13196 13196 MT COX1 Exon4 25.830902 109.383701 25.830902 84.552799 55.1918505 1.741874956 0.183205 107 88 SH2779 2779 Pro6 5' flank - tRNA3 3 55.774759 134.89013 95.3324445 1.979240729 0.183193 202 44 SH14576 14576 MT 21S rRNA intronic 24.546067 99.865234 24.546067 76.319167 50.432617 1.702711505 0.18316 13 2 SH9714 9714 RUF4 RUF4 346 365 246.260257 374.166736 310.2134965 2.491660689 0.183138 150 36 SH20697 20697 YIL148W spliced 25.466613 82.213454 53.8400335 1.731105321 0.183087 35 44 SH9930 9930 RUF5-1 RUF5-1 456 472 28.332154 97.723462 63.027808 1.799532203 0.183085 4 81 SH13043 13043 MT COX1 COX1ai2 25.392919 106.138885 25.392919 81.745966 53.5694425 1.728917127 0.182946 66 48 SH1338 1338 Ile3 tRNA-intron 71 86 29.129952 99.974866 64.552409 1.809912454 0.182907 118 69 SH19475 19475 ADH1 26.011248 85.740821 55.8760345 1.747225577 0.182898 21 71 SH10713 10713 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 451 467 30.962646 103.272214 67.11743 1.826835319 0.182879 160 48 SH7428 7428 snR69 snR69 41 53 38.770137 113.341812 76.0559745 1.881133335 0.18278 207 60 SH1715 1715 Leu6 3' flank 26.421037 88.422425 57.421731 1.75907628 0.182746 148 8 SH4528 4528 U3b (snR17b) U3b 196 212 29.14658 100.016659 64.5816195 1.810108932 0.182691 108 4 SH20131 20131 YDL082W spliced 26.503246 88.974823 57.7390345 1.761469517 0.182611 23 65 SH17762 17762 YKL157W_11_154993_158183_INTRON_282_664 intron 25.439104 106.520708 25.439104 82.081604 53.760354 1.73046212 0.182535 99 32 SH21198 21198 YOL121C spliced 29.938622 101.464939 65.7017805 1.817577139 0.182458 51 35 SH12609 12609 MT_15S MT_15S 26.471424 114.253205 26.471424 88.781781 57.6266025 1.760623016 0.182433 125 67 SH5975 5975 snR36 snR36 331 351 189.217262 303.434216 246.325739 2.391509794 0.18242 109 63 SH21533 21533 copy of SH3753 82.459576 168.691571 125.5755735 2.09890517 0.182412 62 22 SH5630 5630 snR34 snR34 71 90 28.981085 99.729804 64.3554445 1.808585294 0.182399 147 70 SH17528 17528 YJL136C_10_156971_156248_INTRON_25_484 3' exon 28.837237 127.309041 28.837237 99.471804 64.1545205 1.807227263 0.182296 165 31 SH12099 12099 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7381 7398 30.983748 103.347535 67.1656415 1.827147167 0.182188 75 89 SH9335 9335 RUF1 RUF1 251 268 26.508088 89.045844 57.776966 1.761754732 0.182182 138 4 SH11790 11790 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5836 5851 5514.946242 5719.211222 5617.078732 3.749510511 0.182131 202 9 SH19671 19671 SIR1 2.4 26.257259 87.41583 56.8365445 1.754627666 0.182025 18 66 SH4206 4206 telomerase RNA telomerase 66 87 24.591467 76.697607 50.644537 1.704532605 0.181997 146 12 SH15884 15884 YDL082W_4_308423_309387_INTRON_5_369 intron 24.841386 102.120602 24.841386 78.279216 51.560301 1.712315444 0.181997 171 31 SH3325 3325 Thr3 5' flank 27.048499 92.240102 59.6443005 1.77556895 0.181995 117 18 SH11283 11283 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3301 3316 34.133945 107.604312 70.8691285 1.850457092 0.181936 163 61 SH509 509 Asp2 3' flank 28.617872 99.060187 63.8390295 1.805086276 0.181933 48 95 SH19287 19287 YPL175W_16_218629_220087_INTRON_18_117 5' exon 25.739857 108.828363 25.739857 84.088506 54.9141815 1.739684515 0.181826 3 16 SH19216 19216 YPL081W_16_404945_406039_INTRON_8_508 intron 27.446795 120.419758 27.446795 93.972963 60.709879 1.783259367 0.181821 9 16 SH18084 18084 YLR344W_12_819312_820142_INTRON_20_466 intron 88.843477 264.746941 88.843477 176.903464 132.8734705 2.123438278 0.181797 172 88 SH6360 6360 snR43 snR43 41 53 159.989851 267.006757 213.498304 2.329394429 0.181707 123 47 SH7873 7873 snoRNA cluster1 snR73 25.63907 108.099498 25.63907 83.460428 54.549749 1.736792757 0.181637 104 39 SH17181 17181 YHR021C_8_148660_147862_INTRON_4_553 intron 35.768658 144.447867 35.768658 109.679209 72.7239335 1.861677361 0.181598 138 46 SH7852 7852 snoRNA cluster1 intergenic 28.105514 123.958002 28.105514 96.852488 62.479001 1.795734077 0.181557 172 16 SH4823 4823 snR5 3' 26.083666 86.328653 56.2061595 1.749783911 0.18155 63 17 SH13430 13430 MT COX1 intronic 26.775663 116.656824 26.775663 90.881161 58.828412 1.769587125 0.181486 48 96 SH3636 3636 Val2 5' flank 25.612209 83.303261 54.457735 1.736059574 0.181472 10 45 SH3547 3547 Tyr2 tRNA 6 20 73.105585 156.845267 114.975426 2.060605027 0.181418 133 75 SH3843 3843 RNaseP RNaseP 181 196 26.905479 91.681416 59.2934475 1.773006702 0.181197 9 81 SH11716 11716 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5466 5481 43.61992 119.691712 81.655816 1.911987123 0.181107 29 47 SH5818 5818 snR35 snR35 276 291 41.30174 116.727071 79.0144055 1.897706277 0.181084 211 85 SH20972 20972 YML034W spliced 30.517914 102.579856 66.548885 1.823140783 0.181063 45 49 SH12624 12624 MT_15S MT_15S 26.770337 116.656258 26.770337 90.885921 58.828129 1.769585036 0.181055 96 23 SH330 330 Arg5 5' flank - tRNA3 5' flank 3 28.259907 97.565374 62.9126405 1.798737913 0.181035 168 22 SH8296 8296 snoRNA cluster4 intergenic 25.696761 108.578848 25.696761 83.882087 54.789424 1.738696735 0.18102 9 64 SH11457 11457 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4171 4184 68.808318 151.41311 110.110714 2.041829579 0.181019 80 72 SH907 907 Glu3 tRNA 46 58 50.206774 128.04307 89.124922 1.949999163 0.180987 123 77 SH14011 14011 MT COB intronic 24.512478 99.794185 24.512478 76.281707 50.3970925 1.702405482 0.180987 177 49 SH3598 3598 Val1 5' flank - tRNA5 5 33.190344 106.470415 69.8303795 1.844044402 0.180941 31 102 SH1874 1874 Leu9 3' flank 24.376541 75.44826 49.9124005 1.698208457 0.18089 107 45 SH8407 8407 snoRNA cluster 5 snR190 26.076511 111.41979 26.076511 86.343279 56.209895 1.749812774 0.180861 15 100 SH8332 8332 snoRNA cluster4 intergenic/snR53 25.359118 106.067569 25.359118 81.708451 53.5337845 1.728627946 0.180814 131 98 SH15551 15551 YBR078W_2_393082_394818_INTRON_59_388 intron/exon 25.676492 108.44955 25.676492 83.773058 54.724775 1.738183985 0.18078 212 71 SH9262 9262 snR6 / U6 RNA 3' 24.571961 76.672645 50.622303 1.704341899 0.180777 3 54 SH19860 19860 Negative Control 30.115157 101.875365 65.995261 1.819512751 0.180741 146 14 SH4638 4638 snR3 snR3 106 123 26.900083 91.695847 59.297965 1.773039789 0.180674 12 92 SH14138 14138 MT COB intronic 24.970012 103.1792 24.970012 79.209188 52.0896 1.716751022 0.180673 180 89 SH16925 16925 YGR001C_7_498029_497128_INTRON_36_97 5' exon 48.861226 174.233028 48.861226 126.371802 87.616514 1.94258597 0.180629 182 58 SH1349 1349 Ile3 126-133 + 3' flank 126 140 28.515022 98.714319 63.6146705 1.803557282 0.180591 127 91 SH10200 10200 RUF6 RUF6 846 863 25.566342 83.105262 54.335802 1.735086082 0.180315 36 42 SH973 973 Gly1 3' flank 28.514915 98.73817 63.6265425 1.803638324 0.180277 51 77 SH20522 20522 YGR034W spliced 27.047643 92.360805 59.704224 1.776005058 0.180277 153 95 SH11729 11729 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5531 5550 587.765788 791.531845 689.6488165 2.838627995 0.180204 31 95 SH13735 13735 MT COB Exon1 24.72194 101.395009 24.72194 77.673069 51.1975045 1.709248793 0.180127 162 78 SH15558 15558 YBR082C_2_407127_406586_INTRON_48_142 intron 24.675113 101.055356 24.675113 77.380243 51.027678 1.707805806 0.180079 72 66 SH5170 5170 snR13 snR13 6 27 24.012493 73.381284 48.6968885 1.687501213 0.17992 80 102 SH7431 7431 snR69 snR69 56 73 65.307681 147.110176 106.2089285 2.026161027 0.179881 196 92 SH16607 16607 YFL034C-B_6_63992_63015_INTRON_21_134 intron 29.814235 130.199263 29.814235 101.385028 65.5996315 1.8169014 0.179773 130 54 SH1124 1124 Gly4 3' flank 24.955715 79.192241 52.073978 1.716620755 0.179772 189 19 SH6246 6246 snR42 snR42 11 26 120.185031 217.402424 168.7937275 2.227356304 0.179772 139 54 SH13984 13984 MT COB intronic 36979.95632 67487.56808 36979.95632 30508.61176 33744.28404 4.528200218 0.179756 52 29 SH10658 10658 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 176 191 62.639077 143.732622 103.1858495 2.013620144 0.179668 17 92 SH5070 5070 snR11 5' 25.551967 83.072135 54.312051 1.734896203 0.179611 41 89 SH19913 19913 YAL003W spliced 27.713399 95.29407 61.5037345 1.788901487 0.179599 17 57 SH11890 11890 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6336 6353 326.760534 475.651974 401.206254 2.603367694 0.179581 25 103 SH2589 2589 Pro2 3' flank 24.625594 77.110132 50.867863 1.706443493 0.179545 16 97 SH4068 4068 SRP RNA SRP RNA 231 248 27.301238 93.51554 60.408389 1.781097254 0.179474 3 48 SH9670 9670 RUF4 RUF4 126 147 24.149074 74.220876 49.184975 1.691832455 0.179387 165 84 SH4456 4456 telomerase RNA 3' 26.606527 89.956186 58.2813565 1.765529651 0.17935 65 3 SH20852 20852 YLR061W spliced 40.62751 115.964265 78.2958875 1.893738951 0.179336 144 38 SH3328 3328 Thr3 5' flank - tRNA3 3 24.995488 79.48372 52.239604 1.717999876 0.179333 140 23 SH13155 13155 MT COX1 intronic 25.195307 104.96984 25.195307 80.774533 52.98492 1.724152283 0.179298 124 5 SH19625 19625 RNA14 2.2 60.801896 141.476452 101.139174 2.004919402 0.179273 146 13 SH4867 4867 snR8 snR8 116 128 29.006184 99.941619 64.4739015 1.809383951 0.179269 190 47 SH16415 16415 YER056C-A_5_270183_269421_INTRON_38_434 intron 26.16201 112.206079 26.16201 87.044069 56.6030395 1.752839753 0.179236 63 89 SH11070 11070 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2236 2253 42.085721 117.834586 79.9601535 1.902873619 0.1792 204 30 SH6232 6232 snR42 5' 28.446862 98.527326 63.487094 1.802685449 0.179152 44 80 SH16867 16867 YGL187C_7_150529_149708_INTRON_1_342 intron 34.230022 141.103687 34.230022 107.873665 71.0518435 1.851575351 0.179062 59 62 SH6066 6066 snR37 snR37 246 263 25.506536 82.82321 54.164873 1.733717729 0.179046 180 48 SH5359 5359 snR30 3' 48.235119 125.680557 86.957838 1.939308734 0.179002 173 47 SH2282 2282 Phe2 tRNA 6 22 426.256745 598.748833 512.502789 2.709696233 0.178978 123 96 SH8557 8557 snR19 / U1 RNA U1 281 298 27.087813 92.633432 59.8606225 1.777141229 0.178911 74 84 SH20207 20207 YDR059C spliced 77.856008 163.148137 120.5020725 2.080994516 0.178879 199 42 SH12322 12322 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.441155 99.449788 24.441155 76.008633 50.224894 1.700919029 0.178792 94 26 SH21683 21683 copy of SH10033 24.620861 77.144233 50.882547 1.706568842 0.178752 42 47 SH12575 12575 MT_15S MT_15S 36.793924 146.912762 36.793924 111.118838 73.956381 1.868975651 0.178751 66 2 SH21402 21402 Pro8 spliced 56.355869 135.924276 96.1400725 1.982904445 0.178739 142 97 SH5287 5287 snR30 snR30 286 298 67.917046 150.463973 109.1905095 2.038184892 0.178729 95 7 SH14725 14725 MT tRNA cys; tRNA his intergenic 32.714558 137.692989 32.714558 105.978431 69.3464945 1.841024512 0.178723 114 55 SH9396 9396 RUF1 3' 28.253638 97.722285 62.9879615 1.799257553 0.17863 21 72 SH4042 4042 SRP RNA SRP RNA 101 121 24.736237 77.888613 51.312425 1.71022254 0.178594 169 19 SH8178 8178 snoRNA cluster 3; snR70 57.319945 193.479566 57.319945 137.159621 97.239783 1.987843981 0.178509 6 67 SH10894 10894 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1356 1376 696.425683 919.701557 808.06362 2.907445555 0.178463 119 57 SH11422 11422 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3996 4013 1485.702357 1805.96467 1645.833514 3.216385901 0.178419 148 31 SH17985 17985 YLR275W_12_694378_694800_INTRON_6_95 intron 25.648956 108.451177 25.648956 83.802221 54.7255885 1.738190441 0.17839 144 94 SH19779 19779 Negative Control 122.259448 220.207496 171.233472 2.233588663 0.178376 200 90 SH5403 5403 snR31 snR31 81 96 28.157287 97.324894 62.7410905 1.797552063 0.17832 79 66 SH16175 16175 YDR305C_4_1073479_1072737_INTRON_88_176 intron 24.743108 101.697861 24.743108 77.954753 51.3489305 1.710531403 0.178318 182 59 SH11076 11076 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2266 2283 746.519498 977.829016 862.174257 2.935595051 0.178312 140 37 SH21086 21086 YMR292W spliced 26.535018 89.578956 58.056987 1.763854493 0.178304 202 58 SH4132 4132 SRP RNA SRP RNA 551 565 42.12707 117.94151 80.03429 1.903276097 0.178279 32 71 SH15586 15586 YBR084C-A_2_415219_414144_INTRON_3_508 intron 25.556168 107.772583 25.556168 83.216415 54.3862915 1.735489446 0.17827 121 97 SH177 177 Arg2 1-13 1 13 34.446591 108.18487 71.3157305 1.853185335 0.178257 214 67 SH11769 11769 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5731 5748 38.673039 113.47747 76.0752545 1.881243414 0.178151 187 63 SH7658 7658 snoRNA cluster1 5' / snR78 26.266431 113.102884 26.266431 87.836453 57.051442 1.756266626 0.178014 166 100 SH12280 12280 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 43.002181 161.088426 43.002181 119.086245 81.044213 1.908722009 0.177945 205 3 SH1651 1651 Leu5 3' flank 26.119752 86.887688 56.50372 1.752077041 0.1779 81 88 SH21478 21478 copy of SH1445 311.451815 457.014835 384.233325 2.584595029 0.177859 35 19 SH18845 18845 YNL312W_14_48286_49215_INTRON_8_115 intron 26.201942 112.632421 26.201942 87.430479 56.8162105 1.754472264 0.177832 54 15 SH15988 15988 YDL136W_4_217600_218367_INTRON_4_408 intron 56.457055 191.574189 56.457055 136.117134 96.2870945 1.983568082 0.177785 32 14 SH21307 21307 YPL218W spliced 27.933707 96.398102 62.1659045 1.793552257 0.177673 158 22 SH1664 1664 Leu5 3' flank 26.46373 89.167461 57.8155955 1.762045003 0.177652 146 22 SH5771 5771 snR35 snR35 41 59 24.990672 79.593143 52.2919075 1.718434484 0.177646 206 13 SH6725 6725 snR49 151-165 + 3' 151 27.552055 94.738782 61.1454185 1.786363922 0.177642 154 50 SH16118 16118 YDR064W_4_579453_580447_INTRON_22_560 intron 24.691233 101.372967 24.691233 77.681734 51.1864835 1.709155295 0.177622 112 64 SH9347 9347 RUF1 RUF1 311 328 26.065152 86.558008 56.31158 1.750597713 0.177607 192 3 SH13371 13371 MT COX1 intronic 24.416235 99.373412 24.416235 75.957177 50.186706 1.700588692 0.177471 121 94 SH10455 10455 RUF8 RUF8 201 217 28.363858 98.295633 63.3297455 1.801607743 0.177446 211 48 SH5129 5129 snR11 246-258 + 3' 246 26.488452 89.351741 57.9200965 1.762829277 0.177424 48 73 SH2710 2710 Pro5 5' flank 29.454903 100.860876 65.1578895 1.813967009 0.177394 179 58 SH5377 5377 snR31 5' 26.485967 89.341536 57.9137515 1.762781698 0.177356 45 13 SH19406 19406 YPR098C_16_729525_728944_INTRON_48_143 5' exon 24.292213 98.510356 24.292213 75.218143 49.755178 1.696838284 0.177353 109 103 SH5843 5843 snR35 snR35 401 420 24.018844 73.609542 48.814193 1.688546114 0.177342 6 91 SH5417 5417 snR31 snR31 151 163 520.604219 713.263706 616.9339625 2.790238679 0.177226 94 67 SH21879 21879 copy of SH18399 25.23505 81.211056 53.223053 1.726099783 0.177188 197 79 SH6696 6696 snR49 snR49 6 22 38.409294 113.195868 75.802581 1.879683993 0.177093 81 42 SH6509 6509 snR46 snR46 36 51 39.469412 114.592187 77.0307995 1.886664405 0.177025 59 89 SH10325 10325 RUF7 RUF7 236 250 76.66545 161.787656 119.226553 2.076372988 0.176987 164 30 SH14676 14676 MT 21S rRNA 21S rRNA4 26.843379 117.569709 26.843379 91.72633 59.2848545 1.772943758 0.176851 109 4 SH6270 6270 snR42 snR42 131 150 24.305329 75.335725 49.820527 1.697408317 0.176827 113 46 SH19657 19657 SIR1 2.2 28.445441 98.709713 63.577577 1.803303973 0.176715 77 44 SH19655 19655 SIR1 2.2 25.569397 83.436795 54.503096 1.736421173 0.176714 32 75 SH7235 7235 snR65 5' 29.916263 101.735459 65.825861 1.818396548 0.176694 213 61 SH7239 7239 snR65 5' 26.417483 88.950167 57.683825 1.761054051 0.176688 29 18 SH8527 8527 snR19 / U1 RNA U1 131 147 47.304648 124.637613 85.9711305 1.934352638 0.17664 34 15 SH15169 15169 MT tRNA Val 3' 25.96128 110.929789 25.96128 85.968509 55.9648945 1.747915689 0.176639 36 100 SH5681 5681 snR34 snR34 326 342 28.185611 97.577482 62.8815465 1.798523214 0.176637 109 35 SH17217 17217 YHR041C_8_189855_189122_INTRON_15_115 5' exon 38.697572 151.295249 38.697572 113.597677 76.1476245 1.88165636 0.176616 200 65 SH12665 12665 MT_15S MT_15S 25.940729 110.782799 25.940729 85.84207 55.8913995 1.747344984 0.17656 202 50 SH2053 2053 Lys4 5' flank 24.310356 75.386034 49.848195 1.697649437 0.176557 30 92 SH8439 8439 snoRNA cluster 5 snR128 16283.38915 31138.4278 16283.38915 14856.03866 15569.7139 4.192280632 0.176544 213 57 SH2028 2028 Lys3 86-96 + 3' flank 86 102 26.164911 87.30496 56.7349355 1.753850565 0.17653 208 73 SH11995 11995 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6861 6874 51.867088 130.42659 91.146839 1.959741612 0.176476 43 71 SH2624 2624 Pro3 tRNA 71 83 1286.814084 1589.500382 1438.157233 3.15780637 0.176432 168 8 SH19917 19917 YAL003W spliced 26.689374 90.780689 58.7350315 1.768897206 0.176397 35 102 SH11662 11662 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5196 5209 73.540149 157.826266 115.6832075 2.063270322 0.176386 178 91 SH6451 6451 snR45 snR45 101 113 28.408187 98.573507 63.490847 1.802711121 0.176364 53 91 SH6858 6858 snR56 5' 23.720015 71.946026 47.8330205 1.679727806 0.176284 199 37 SH1264 1264 Ile2 tRNA 16 31 28.839654 99.799216 64.319435 1.808342221 0.176189 161 95 SH19527 19527 CBP1 1.2 26.429134 89.074297 57.7517155 1.761564889 0.176172 123 57 SH9315 9315 RUF1 RUF1 151 167 61.923887 143.096233 102.51006 2.010766488 0.176166 39 33 SH10088 10088 RUF6 RUF6 286 303 25.325268 81.886176 53.605722 1.72921115 0.17616 26 10 SH19977 19977 YBL087C spliced 29.175267 100.418772 64.7970195 1.81155503 0.176117 97 60 SH6534 6534 snR46 snR46 161 178 25.19788 81.061266 53.129573 1.725336326 0.176108 152 65 SH16579 16579 YER179W_5_548416_549512_INTRON_133_224 intron 31.079757 133.933867 31.079757 103.85411 67.4669335 1.829090971 0.176075 103 60 SH8369 8369 snoRNA cluster 5 5' 56.427118 191.633913 56.427118 136.206795 96.3169565 1.983702751 0.17601 74 66 SH20245 20245 YDR367W spliced 26.007366 86.324116 56.165741 1.749471493 0.176004 60 6 SH7050 7050 snR62 snR62 41 60 29.771019 101.510307 65.640663 1.817172959 0.175994 81 69 SH19976 19976 YBL087C spliced 33.873041 107.594347 70.733694 1.849626339 0.175858 4 25 SH4372 4372 telomerase RNA telomerase 896 910 255.144424 386.943807 321.0441155 2.506564714 0.175803 96 37 SH16613 16613 YFL039C_6_54695_53260_INTRON_11_318 5' exon 25.945184 110.886066 25.945184 85.940882 55.943033 1.747746008 0.175767 164 61 SH9687 9687 RUF4 RUF4 211 227 42.970543 119.178364 81.0744535 1.90888403 0.175748 133 46 SH6145 6145 snR39B snR39B 66 85 26.610048 90.312742 58.461395 1.766869174 0.175747 210 92 SH15217 15217 MT COX3 cox3 26.57776 115.676067 26.57776 90.098307 58.3380335 1.765951786 0.175745 106 4 SH7383 7383 snR68 136 + 3' 136 28.81732 99.781866 64.299593 1.808208224 0.175741 35 91 SH12639 12639 MT_15S MT_15S 26.712678 116.722887 26.712678 91.010209 58.8614435 1.769830908 0.175603 81 26 SH8207 8207 snoRNA cluster 3; snR51 25.90092 110.570493 25.90092 85.669573 55.7852465 1.746519356 0.175587 3 98 SH8929 8929 snR17a / U3a 5' 27.871823 96.288193 62.080008 1.792951764 0.175555 77 88 SH3615 3615 Val1 71-74 + 3' flank 71 26.3366 88.522514 57.429557 1.759135466 0.175527 26 99 SH2953 2953 Ser1 5' flank - tRNA12 12 104.198718 197.390968 150.794843 2.178386489 0.175492 118 47 SH8423 8423 snoRNA cluster 5 snR190/intergenic 28.204973 124.955807 28.204973 97.750834 62.9779035 1.799188199 0.17548 170 74 SH11706 11706 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5416 5429 85.290816 173.015644 129.15323 2.111105272 0.175434 45 60 SH19464 19464 CYC1 27.292305 93.774445 60.533375 1.781994888 0.175423 133 86 SH9648 9648 RUF4 RUF4 16 28 31.169141 104.049317 67.609229 1.830005983 0.175413 90 48 SH7378 7378 snR68 snR68 111 130 27.787984 95.932967 61.8604755 1.791413254 0.175412 62 59 SH6258 6258 snR42 snR42 71 91 24.197467 74.81026 49.5038635 1.694639095 0.17534 138 102 SH9352 9352 RUF1 RUF1 336 354 26.141946 87.285168 56.713557 1.753686887 0.175074 56 4 SH19076 19076 YOR293W_15_867094_867848_INTRON_53_489 intron 32.174247 136.645088 32.174247 105.470841 68.822544 1.837730722 0.175045 164 31 SH1649 1649 Leu5 111-115 + 3' flank 111 24.718883 78.070334 51.3946085 1.710917562 0.175012 150 28 SH5513 5513 snR32 3' 27.440215 94.448752 60.9444835 1.784934401 0.174998 53 101 SH3030 3030 Ser2 3' flank 27.543451 94.900937 61.222194 1.786908889 0.174959 133 89 SH4135 4135 SRP RNA SRP RNA 566 578 63.247573 144.881089 104.064331 2.017301897 0.174951 131 4 SH8524 8524 snR19 / U1 RNA U1 116 132 126.300093 225.787017 176.043555 2.24562013 0.174908 192 88 SH19055 19055 YOR234C_15_779404_778554_INTRON_20_546 intron 26.652612 116.327724 26.652612 90.675112 58.663862 1.76837065 0.174898 104 32 SH3184 3184 Ser5 tRNA 41 53 41.13984 116.890697 79.0152685 1.89771102 0.174774 48 101 SH5163 5163 snR13 5' 23.18223 68.968229 46.0752295 1.663467507 0.174746 80 40 SH6578 6578 snR47 5' - 12 -4 12 24.663101 77.73894 51.2010205 1.709278617 0.174719 171 95 SH10997 10997 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1871 1888 43553.36737 35348.48613 39450.92675 4.59605721 0.174689 41 37 SH18892 18892 YOL120C_15_94401_93394_INTRON_113_559 exon/intron 27.25535 119.92468 27.25535 93.66933 60.46234 1.781484951 0.17467 13 89 SH15806 15806 YDL061C_4_341182_340627_INTRON_1_408 intron 58.887825 197.318423 58.887825 139.430598 99.1592115 1.996333065 0.174638 187 104 SH10370 10370 RUF7 RUF7 461 476 44.242195 120.888455 82.565325 1.916797695 0.174594 51 38 SH19039 19039 YOR234C_15_779404_778554_INTRON_20_546 intron 24.383068 99.361009 24.383068 75.977941 50.1805045 1.700535023 0.174587 114 75 SH1896 1896 Lys1 5' flank 31.74703 104.939334 68.343182 1.834695195 0.174572 121 86 SH20074 20074 YCR028C-A spliced 26.149054 87.378074 56.763564 1.754069656 0.174556 60 67 SH10861 10861 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1191 1208 1150.038817 1439.128631 1294.583724 3.112130143 0.174393 121 49 SH2969 2969 Ser1 76-83 + 3' flank 76 26.348682 88.707032 57.527857 1.759878196 0.174374 159 92 SH9900 9900 RUF5-1 RUF5-1 306 322 26.095517 87.046017 56.570767 1.752592067 0.174352 71 79 SH9310 9310 RUF1 RUF1 126 142 26.191174 87.67923 56.935202 1.755380866 0.174278 126 3 SH14799 14799 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys / intergenic 26.909907 118.111753 26.909907 92.201846 59.5558765 1.774924621 0.174248 112 90 SH10394 10394 RUF7 3' 26.32265 88.552161 57.4374055 1.759194814 0.174188 128 88 SH19463 19463 CYC1 26.141577 87.362192 56.7518845 1.753980287 0.174187 213 19 SH4170 4170 SRP RNA 3' 68.097817 151.063922 109.5808695 2.039734742 0.174162 41 9 SH10572 10572 RUF8 RUF8 786 802 26.733687 91.285638 59.0096625 1.770923131 0.17416 76 104 SH19067 19067 YOR293W_15_867094_867848_INTRON_53_489 intron 1042.401386 2359.71561 1042.401386 1318.314224 1180.357805 3.072013676 0.174151 195 4 SH2878 2878 Pro8 5' flank 26.524025 89.891126 58.2075755 1.76497951 0.174122 80 15 SH17718 17718 YKL081W_11_282533_284097_INTRON_206_531 intron/exon 31.968438 136.220497 31.968438 105.252059 68.6102485 1.836388992 0.174097 50 48 SH18698 18698 YNL130C_14_381156_379555_INTRON_30_470 exon/intron 26.701358 116.781705 26.701358 91.080347 58.8908525 1.770047841 0.174043 123 6 SH2801 2801 Pro6 96-102 + 3' flank 96 26.793427 91.703352 59.2483895 1.77267655 0.173975 74 83 SH17098 17098 YHL001W_8_104270_105084_INTRON_130_527 intron 49.129783 175.288025 49.129783 127.158242 88.1440125 1.945192817 0.173823 167 76 SH2968 2968 Ser1 tRNA 71 83 69.757729 153.241114 111.4994215 2.047272614 0.17378 211 29 SH7346 7346 snR68 5' 25.081995 80.508125 52.79506 1.722593288 0.173759 160 96 SH1217 1217 Ile1 tRNA 46 58 86.43225 174.648008 130.540129 2.115744038 0.173705 179 40 SH9292 9292 RUF1 RUF1 36 53 25.528452 83.435073 54.4817625 1.736251149 0.173667 135 96 SH12392 12392 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.621856 135.445079 31.621856 104.823223 68.2225395 1.833927881 0.173634 105 4 SH10221 10221 RUF6 RUF6 951 965 76.08201 161.339742 118.710876 2.07449051 0.173581 174 65 SH8726 8726 LSR1 / U2 RNA U2 271 285 213.808837 335.929208 274.8690225 2.439125798 0.173534 29 32 SH8141 8141 snoRNA cluster 3; intergenic 2102.259848 4568.375624 2102.259848 2467.115776 2284.687812 3.358826865 0.173526 14 73 SH4187 4187 telomerase RNA 5' 27.277083 93.850355 60.563719 1.782212536 0.173493 186 36 SH4406 4406 telomerase RNA telomerase 1066 1080 186.180959 301.287724 243.7343415 2.386916724 0.173431 102 98 SH15785 15785 YDL029W_4_399336_400634_INTRON_23_145 intron 26.616278 116.196918 26.616278 90.58064 58.598459 1.767886195 0.173307 108 8 SH15538 15538 YBR078W_2_393082_394818_INTRON_59_388 intron 28.422729 126.297375 28.422729 98.874646 63.6486875 1.803789452 0.1733 94 52 SH8124 8124 snoRNA cluster 3; snR41 28.044919 124.261477 28.044919 97.216558 62.6307385 1.796787533 0.173298 194 60 SH15791 15791 YDL029W_4_399336_400634_INTRON_23_145 3' exon 28.104893 124.58564 28.104893 97.480747 62.79282 1.797909987 0.173281 23 81 SH1468 1468 Leu2 111-114 + 3' flank 111 24.775649 78.575958 51.6758035 1.713287238 0.173267 39 65 SH9739 9739 RUF4 RUF4 471 488 25.637089 84.170595 54.903842 1.739602736 0.173231 33 36 SH8245 8245 snoRNA cluster4 5' 24.847271 102.888404 24.847271 79.041133 51.944202 1.715537079 0.173195 42 55 SH6639 6639 snR48 snR48 21 40 27.094403 93.078714 60.0865585 1.77877733 0.173191 127 41 SH1489 1489 Leu3 5' flank 26.698544 91.141584 58.920064 1.77026321 0.173186 5 8 SH369 369 Asn1 5' flank 32.920829 106.527977 69.724403 1.843384804 0.173161 185 44 SH5080 5080 snR11 snR11 1 22 25.922255 86.026195 55.974225 1.747988089 0.173111 21 49 SH3675 3675 Val2 3' flank 27.249105 93.757129 60.503117 1.781777749 0.173107 54 99 SH10561 10561 RUF8 RUF8 731 748 27.770445 96.042366 61.9064055 1.791735588 0.172943 101 40 SH15147 15147 MT tRNA Thr1 reverse complement tRNA 25.850574 110.428035 25.850574 85.577461 55.7140175 1.745964476 0.172918 58 92 SH9505 9505 RUF3 5' 82.841935 170.099864 126.4708995 2.101990607 0.172893 12 38 SH13941 13941 MT COB Cytbi3 25.25947 106.001002 25.25947 81.741532 53.500501 1.728357849 0.172831 87 93 SH18147 18147 YLR406C_12_931752_931062_INTRON_58_406 intron 70.378331 223.498812 70.378331 154.120481 112.249406 2.050184051 0.172804 190 91 SH17868 17868 YLL050C_12_40413_39803_INTRON_15_193 intron 38.905784 151.998297 38.905784 114.092513 76.4991485 1.883656601 0.172796 51 86 SH3884 3884 RNaseP 3' 22.666154 66.253586 44.45987 1.647968188 0.17279 95 14 SH21670 21670 copy of SH9620 26.072851 87.038959 56.555905 1.752477956 0.17277 71 30 SH5215 5215 snR30 5' 24.874064 79.256343 52.0652035 1.71654757 0.172675 190 2 SH753 753 Gln4 tRNA 36 50 81.260452 168.061671 124.6610615 2.095730821 0.17265 22 88 SH20967 20967 YML026C spliced 26.703394 91.225649 58.9645215 1.770590779 0.172634 124 41 SH5174 5174 snR13 snR13 26 43 81.091345 167.849276 124.4703105 2.095065773 0.172631 137 98 SH17799 17799 YKL190W_11_82949_83552_INTRON_53_128 5' exon 50.749851 179.030601 50.749851 129.28075 90.0153005 1.954316336 0.17258 46 89 SH19301 19301 YPL198W_16_173151_174701_INTRON_12_420 intron 24.849628 102.959436 24.849628 79.109808 51.979718 1.715833919 0.172548 37 54 SH5998 5998 snR37 5' 28.81772 99.951953 64.3848365 1.808783597 0.172546 31 68 SH12341 12341 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.544903 121.633726 27.544903 95.088823 61.316863 1.787579928 0.172524 159 74 SH13285 13285 MT COX1 Exon 5a 26.667094 116.663213 26.667094 90.996119 58.8316065 1.769610708 0.172491 57 96 SH192 192 Arg2 3' flank 26.292019 88.50591 57.3989645 1.758904058 0.172473 181 18 SH17172 17172 YHR021C_8_148660_147862_INTRON_4_553 5' exon 31.5005 135.223808 31.5005 104.723308 68.111904 1.833223021 0.172465 6 66 SH2804 2804 Pro6 3' flank 23.985968 73.782532 48.88425 1.689168956 0.172421 73 31 SH12019 12019 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6981 6999 138.424196 241.434494 189.929345 2.278592071 0.1724 14 64 SH16562 16562 YER133W_5_432491_433954_INTRON_178_702 intron 88.409017 264.711488 88.409017 177.302471 132.855744 2.123380336 0.172334 208 41 SH11050 11050 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2136 2154 24.512365 76.975617 50.743991 1.705384621 0.172322 95 55 SH3605 3605 Val1 tRNA 21 37 37.790914 112.706108 75.248511 1.876497911 0.172285 49 8 SH3950 3950 RNase MRP RNaseMRP 166 180 29.236742 100.736492 64.986617 1.81282393 0.172274 87 41 SH9563 9563 RUF3 RUF3 201 217 25.785159 85.22314 55.5041495 1.744325452 0.172121 66 76 SH10831 10831 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1041 1058 30083.08573 25568.48129 27825.78351 4.444447402 0.172112 5 62 SH6150 6150 snR39B 91-96 + 3' 91 24.316909 75.770526 50.0437175 1.699349564 0.172026 40 81 SH19375 19375 YPR043W_16_654161_654842_INTRON_3_405 intron 165.888043 440.918721 165.888043 276.030678 220.9593605 2.344312404 0.172019 11 101 SH8155 8155 snoRNA cluster 3; intergenic/snR70 24.948804 103.747915 24.948804 79.799111 52.3739575 1.719115391 0.171941 87 38 SH6409 6409 snR43 3' 24.075508 74.346564 49.211036 1.692062508 0.171931 144 104 SH9945 9945 RUF5-1 RUF5-1 531 545 193.822264 311.217636 252.51995 2.402295695 0.171909 67 84 SH5696 5696 snR34 snR34 401 419 24.211392 75.154002 49.682697 1.696205163 0.171886 195 51 SH16570 16570 YER133W_5_432491_433954_INTRON_178_702 intron/exon 24.087806 97.510403 24.087806 74.422597 49.2552015 1.6924521 0.171885 44 31 SH1285 1285 Ile2 tRNA 121 133 74.723905 159.723268 117.2235865 2.069015005 0.171875 50 44 SH6138 6138 snR39B snR39B 31 47 55.702281 135.602746 95.6525135 1.980696387 0.171866 5 101 SH12240 12240 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.517187 108.039986 25.517187 83.522799 54.519993 1.736555791 0.171805 93 92 SH11194 11194 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2856 2876 24.15814 74.848637 49.5033885 1.694634927 0.17175 159 58 SH358 358 Arg5 3' flank 393.654563 561.480307 477.567435 2.679034705 0.171713 208 87 SH8804 8804 LSR1 / U2 RNA U2 661 680 26.620254 90.756301 58.6882775 1.768551363 0.171704 108 97 SH3799 3799 RNaseP 5' flank 52.575865 131.665542 92.1207035 1.964357246 0.171687 54 9 SH12485 12485 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 27.449347 121.183733 27.449347 94.734386 61.0918665 1.785983394 0.171685 15 6 SH1402 1402 Leu1 tRNA 81 97 5828.218328 6044.151721 5936.185025 3.773507429 0.171661 206 54 SH285 285 Arg4 21-33 21 33 37.37471 112.227832 74.801271 1.873908977 0.171648 85 104 SH11832 11832 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6046 6059 38813.69994 32004.56251 35409.13122 4.549115271 0.171641 150 89 SH6688 6688 snR49 5' 25.428978 82.955784 54.192381 1.733938233 0.171641 202 63 SH3796 3796 RNaseP 5' flank 74.967788 160.065463 117.5166255 2.070099312 0.171614 52 56 SH2446 2446 Phe5 tRNA 1 13 35.877421 110.358116 73.1177685 1.864022929 0.171546 157 77 SH21095 21095 YNL044W spliced 31.176057 104.277964 67.7270105 1.830761906 0.1715 72 65 SH11346 11346 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3616 3633 25.980875 86.55232 56.2665975 1.750250654 0.171483 95 13 SH1064 1064 Gly3 tRNA 56 68 30.196961 102.526977 66.361969 1.821919263 0.171446 207 90 SH18919 18919 YOL121C_15_92849_92025_INTRON_21_410 exon/intron 26.512974 115.586676 26.512974 90.073702 58.293338 1.765618925 0.171348 110 26 SH16782 16782 YGL103W_7_310965_311925_INTRON_50_560 intron 26.78732 117.667932 26.78732 91.880612 59.333966 1.773303378 0.171341 62 33 SH8493 8493 snR19 / U1 RNA 5' 26.572047 90.468908 58.5204775 1.767307861 0.171333 159 55 SH17059 17059 YGR214W_7_920570_921783_INTRON_91_545 intron 26.588202 116.169948 26.588202 90.581746 58.584974 1.767786242 0.171279 188 77 SH21062 21062 YMR201C spliced 35.610058 110.033123 72.8215905 1.86226016 0.171274 86 66 SH14508 14508 MT 21S rRNA 21S rRNA3 33.379962 139.590857 33.379962 107.210895 70.2954285 1.846927083 0.171261 111 36 SH7236 7236 snR65 5' 117.822408 215.484552 166.65348 2.221814387 0.171193 5 26 SH13811 13811 MT COB Cytbi2 26.16367 112.943805 26.16367 87.780135 56.9719025 1.755660722 0.171149 182 14 SH354 354 Arg5 3' flank 373.284793 536.424446 454.8546195 2.65787261 0.171144 196 96 SH4071 4071 SRP RNA SRP RNA 246 262 132.900847 234.673801 183.787324 2.264315554 0.170861 93 34 SH1465 1465 Leu2 tRNA 96 112 74.031408 158.944518 116.487963 2.066281051 0.170631 41 102 SH19128 19128 YPL075W_16_412249_415357_INTRON_9_759 intron 77.756597 240.532172 77.756597 163.775575 120.766086 2.081944991 0.170609 23 100 SH3546 3546 Tyr2 tRNA 1 13 38.956304 114.286613 76.6214585 1.884350415 0.170582 85 70 SH14661 14661 MT 21S rRNA 21S rRNA4 28.489427 126.869598 28.489427 99.380171 63.934799 1.805737304 0.170576 88 88 SH1054 1054 Gly3 tRNA 6 23 55.752589 135.758893 95.755741 1.981164821 0.170551 32 53 SH7326 7326 snR66 3' 35.027042 109.328285 72.1776635 1.858402819 0.170503 132 42 SH12165 12165 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7711 7728 437.021995 615.25267 526.1373325 2.721099119 0.170389 2 99 SH11609 11609 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4931 4947 92.404598 182.705877 137.5552375 2.138477131 0.170317 125 38 SH15990 15990 YDL136W_4_217600_218367_INTRON_4_408 intron 28.510142 127.002509 28.510142 99.492367 64.0012545 1.806188487 0.170309 42 82 SH13352 13352 MT COX1 intronic 26.407782 114.879895 26.407782 89.472113 57.9399475 1.762978097 0.170284 198 20 SH3414 3414 Trp1 5' flank 28.009768 97.297189 62.6534785 1.796945188 0.170222 13 25 SH6684 6684 snR49 5' 25.209916 81.648566 53.429241 1.727779005 0.170129 211 95 SH18251 18251 YML034W_13_209525_212155_INTRON_1921_2046 intron 24.465015 100.321051 24.465015 76.856036 50.6605255 1.70466969 0.170077 170 53 SH8895 8895 LSR1 / U2 RNA U2 1116 1134 24.547769 77.382892 50.9653305 1.707274845 0.170063 56 29 SH20163 20163 YDL130W spliced 96.45882 187.953208 142.206014 2.152917963 0.169959 26 87 SH21561 21561 copy of SH4991 25.319871 82.38493 53.8524005 1.731205067 0.169945 165 86 SH9626 9626 RUF4 5' 78.906447 165.315947 122.111197 2.086755488 0.169933 103 53 SH632 632 Gln2 5' flank 25.976372 86.664403 56.3203875 1.750665634 0.169891 27 63 SH15530 15530 YBR048W_2_332790_333771_INTRON_46_556 3' exon 82.678557 251.860907 82.678557 170.18235 126.4304535 2.101851696 0.169829 69 100 SH12189 12189 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7831 7849 80.064796 166.808228 123.436512 2.091443641 0.169812 9 101 SH3844 3844 RNaseP RNaseP 186 201 26.763385 91.887562 59.3254735 1.773241213 0.169805 99 6 SH19351 19351 YPL249C-A_16_76239_75699_INTRON_17_254 intron 27.926694 123.895046 27.926694 96.968352 62.447523 1.795515217 0.169752 211 14 SH9887 9887 RUF5-1 RUF5-1 241 258 24.573017 77.572105 51.072561 1.708187636 0.169712 104 85 SH14658 14658 MT 21S rRNA 21S rRNA4 94.127805 278.121715 94.127805 184.99391 139.5608575 2.144763629 0.169707 76 92 SH16938 16938 YGR027C_7_534779_534126_INTRON_1_312 intron 28.286991 125.84589 28.286991 98.558899 63.422945 1.802246404 0.169665 211 103 SH387 387 Asn1 16-30 16 30 37.742388 112.792085 75.2672365 1.876605971 0.169645 180 59 SH10973 10973 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1751 1766 28141.64932 24150.98011 26146.31471 4.417410484 0.16955 71 76 SH3169 3169 Ser5 5' flank 26.043863 87.138916 56.5913895 1.752750357 0.169526 103 102 SH16096 16096 YDR059C_4_569765_569229_INTRON_48_137 5' exon 26.320301 114.286213 26.320301 88.965912 57.6431065 1.760747378 0.169474 151 15 SH2990 2990 Ser2 5' flank 24.58028 77.639296 51.109788 1.70850408 0.169454 90 32 SH2104 2104 Met1 5' flank 24.776297 78.89426 51.8352785 1.714625436 0.169453 19 19 SH19839 19839 Negative Control 29.063305 100.571113 64.817209 1.811690327 0.169411 200 91 SH11492 11492 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4346 4361 29831.95063 25426.95051 27629.45057 4.441372249 0.16931 171 103 SH8086 8086 snoRNA cluster 2 3' 25.694768 109.579939 25.694768 84.885171 55.2899695 1.74264635 0.169284 41 66 SH20289 20289 YDR471W spliced 27.624406 95.679416 61.651911 1.789946543 0.169275 179 97 SH15636 15636 YBR186W_2_600511_602318_INTRON_1552_1664 intron 24.546731 100.987755 24.546731 77.441024 50.9938775 1.707518036 0.169263 89 32 SH7938 7938 snoRNA cluster1 3' 24.723422 102.29562 24.723422 78.572198 51.64781 1.713051911 0.169241 158 90 SH16868 16868 YGL187C_7_150529_149708_INTRON_1_342 intron 29.582755 130.117279 29.582755 101.534524 65.5586395 1.816629932 0.169191 123 55 SH3562 3562 Tyr2 81-89 + 3' flank 81 25.397158 82.959192 54.178175 1.733824372 0.169186 81 81 SH14581 14581 MT 21S rRNA intronic 27.828064 123.407516 27.828064 96.579452 62.203758 1.793816623 0.169174 60 98 SH14486 14486 MT 21S rRNA 21S rRNA3 29.609156 130.194022 29.609156 101.584866 65.597011 1.816884051 0.169151 113 54 SH11987 11987 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S/3'ETS 6821 6841 24.669287 78.236602 51.4529445 1.711410233 0.169103 18 75 SH18785 18785 YNL301C_14_64561_63569_INTRON_113_544 exon/intron 28.895076 128.173714 28.895076 100.278638 64.586857 1.810144151 0.169084 189 28 SH1482 1482 Leu2 3' flank 35.290319 109.765939 72.528129 1.860506474 0.168646 100 13 SH6165 6165 snR39B 3' 26.415531 89.682467 58.048999 1.763794735 0.168555 122 20 SH10706 10706 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 416 433 30.10765 102.525497 66.3165735 1.821622079 0.168507 34 52 SH19388 19388 YPR043W_16_654161_654842_INTRON_3_405 intron 26.577141 116.344178 26.577141 90.767037 58.672089 1.768431551 0.168492 211 97 SH17222 17222 YHR041C_8_189855_189122_INTRON_15_115 intron 24.318061 99.37507 24.318061 76.057009 50.187535 1.700595865 0.168442 178 49 SH2576 2576 Pro2 3' flank 26.970312 92.889722 59.930017 1.777644401 0.168387 102 20 SH10769 10769 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 731 744 33.230035 107.169503 70.199769 1.846335683 0.168381 60 80 SH363 363 Arg5 3' flank 31.340355 104.723905 68.03213 1.832714068 0.168288 184 75 SH6102 6102 snR37 3' 152.351124 259.600204 205.975664 2.313815912 0.168253 70 17 SH7479 7479 snR71 snR71 11 27 84.171894 172.276007 128.2239505 2.107969153 0.168238 12 93 SH21359 21359 Ile2_3 spliced 26.811181 92.21102 59.5111005 1.774597981 0.168201 198 57 SH12600 12600 MT_15S MT_15S 5606.638959 11461.03418 5606.638959 5855.39522 5731.01709 3.758231703 0.168182 30 39 SH12948 12948 MT COX1 COX1ai2 24.815308 103.067563 24.815308 79.252255 52.0337815 1.716285389 0.168161 119 70 SH13169 13169 MT COX1 intronic 37.957496 150.096445 37.957496 113.138949 75.5482225 1.878224251 0.168157 46 95 SH1866 1866 Leu9 tRNA 71 85 4018.726529 4373.246244 4195.986387 3.62283407 0.168139 73 80 SH7198 7198 snR64 snR64 56 75 24.33201 76.17118 50.251595 1.701149851 0.168114 102 67 SH19081 19081 YOR293W_15_867094_867848_INTRON_53_489 intron 30.251521 132.069758 30.251521 102.818237 66.534879 1.823049371 0.16791 136 80 SH18008 18008 YLR287C-A_12_713158_712537_INTRON_4_433 intron 56.580477 192.566563 56.580477 136.986086 96.7832815 1.985800343 0.167877 186 95 SH16650 16650 YFR031C-A_6_221405_220494_INTRON_5_151 intron 24.43316 100.26556 24.43316 76.8324 50.63278 1.704431773 0.167857 192 2 SH16999 16999 YGR118W_7_726968_727725_INTRON_66_385 intron 28.918723 128.306878 28.918723 100.388155 64.653439 1.810591631 0.167846 191 98 SH4448 4448 telomerase RNA telomerase 1276 1288 636.367882 855.507377 745.9376295 2.872702516 0.167827 46 88 SH4239 4239 telomerase RNA telomerase 231 246 26.897811 92.617408 59.7576095 1.776393216 0.167792 37 7 SH10674 10674 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 256 276 26.64322 91.280861 58.9620405 1.770572505 0.167734 161 100 SH4827 4827 snR8 5' 78.555663 165.070288 121.8129755 2.085693552 0.167714 169 29 SH16305 16305 YDR450W_4_1359912_1360787_INTRON_48_482 intron 28.946097 128.392228 28.946097 100.446131 64.696114 1.810878195 0.167706 109 49 SH8962 8962 snR17a / U3a U3a 96 112 27.561124 95.521987 61.5415555 1.789168469 0.167679 6 40 SH3435 3435 Trp1 tRNA 6 18 447.642743 629.328316 538.4855295 2.731174037 0.167656 122 83 SH11942 11942 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6596 6614 51.460619 130.504223 90.982421 1.958957489 0.167656 50 50 SH1815 1815 Leu8 101 + 3' flank 101 24.609674 77.979742 51.294708 1.710072562 0.167578 24 93 SH20506 20506 YGR027C spliced 24.613038 78.004414 51.308726 1.710191231 0.16754 170 83 SH11899 11899 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6381 6394 42898.20632 35043.58861 38970.89746 4.590740407 0.167519 199 52 SH16056 16056 YDL219W_4_65243_65766_INTRON_66_136 5' exon 30.88644 133.86943 30.88644 103.98299 67.434715 1.828883526 0.16749 146 72 SH19854 19854 Negative Control 87.36053 176.460757 131.9106435 2.120279839 0.167403 33 51 SH693 693 Gln3 5' flank - tRNA10 5' flank 10 28.60144 99.826133 64.2137865 1.80762828 0.167375 98 37 SH16885 16885 YGL189C_7_148970_148233_INTRON_1_368 intron 31.806636 136.191409 31.806636 105.384773 68.5957045 1.836296921 0.167344 40 25 SH20211 20211 YDR059C spliced 53.459732 133.096928 93.27833 1.969780762 0.167332 115 33 SH12337 12337 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.984406 136.602668 31.984406 105.618262 68.801334 1.837596859 0.167321 109 72 SH2932 2932 Pro8 3' flank 110.605922 206.677126 158.641524 2.200416873 0.167284 19 53 SH20941 20941 YLR426W spliced 26.588377 90.957323 58.77285 1.769176751 0.167258 123 53 SH11354 11354 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3656 3669 102.903293 196.668349 149.785821 2.175470704 0.167238 183 13 SH4169 4169 SRP RNA 3' 349.404191 507.92919 428.6666905 2.632119738 0.167215 71 21 SH16007 16007 YDL137W_4_216158_217074_INTRON_1_332 intron 719.670082 1672.311623 719.670082 953.641541 836.6558115 2.922546832 0.167193 16 76 SH1739 1739 Leu7 5' flank - tRNA6 6 772.682034 1015.33369 894.007862 2.951341338 0.167174 209 4 SH8979 8979 snR17a / U3a U3a 181 198 279.278879 419.510752 349.3948155 2.543316456 0.167127 164 87 SH12046 12046 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7116 7131 28.542901 99.730947 64.136924 1.807108127 0.16712 99 62 SH2226 2226 Phe1 tRNA 6 20 30.762518 103.782187 67.2723525 1.827836615 0.167105 202 101 SH5285 5285 snR30 snR30 276 292 25.48783 83.739179 54.6135045 1.737300046 0.167083 182 88 SH19978 19978 YBL087C spliced 26.422728 89.866624 58.144676 1.764509955 0.167076 12 31 SH3878 3878 RNaseP RNaseP 356 368 33.660194 107.784165 70.7221795 1.849555636 0.167062 90 3 SH595 595 Gln1 tRNA 16 32 25.963568 86.83306 56.398314 1.751266121 0.167054 207 61 SH12037 12037 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7071 7093 24.176762 75.318362 49.747562 1.696771802 0.167009 181 30 SH11222 11222 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2996 3018 25.72597 85.291396 55.508683 1.744360923 0.16695 126 20 SH4158 4158 SRP RNA 3' 59.693915 141.020475 100.357195 2.001548514 0.166917 60 3 SH6204 6204 snR40 81-97 + 3' 81 30.801048 103.861778 67.331413 1.828217729 0.166914 128 9 SH10819 10819 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 981 999 249.274578 381.795773 315.5351755 2.499047781 0.166872 61 56 SH6198 6198 snR40 snR40 51 65 34.888294 109.344736 72.116515 1.858034731 0.166853 151 94 SH7315 7315 snR66 snR66 66 85 25.300717 82.529162 53.9149395 1.731709122 0.166813 61 14 SH14128 14128 MT COB exon5/intron 26.796416 118.044535 26.796416 92.248119 59.5222675 1.774679467 0.166801 79 50 SH17894 17894 YLR048W_12_242233_243350_INTRON_91_449 intron/exon 27.588914 122.300072 27.588914 95.711158 61.650036 1.789933335 0.166781 35 36 SH5678 5678 snR34 snR34 311 329 57.326398 138.025899 97.6761485 1.989788526 0.166766 207 103 SH8408 8408 snoRNA cluster 5 snR190 25.947675 111.710867 25.947675 86.763192 56.3554335 1.750935795 0.166668 87 17 SH18880 18880 YNR053C_14_723108_721117_INTRON_811_1341 intron/exon 71.733285 227.112601 71.733285 156.379316 114.0563005 2.057119281 0.166642 72 26 SH14665 14665 MT 21S rRNA 21S rRNA4 44.241222 164.618762 44.241222 121.37754 82.809381 1.918079538 0.16664 204 57 SH21680 21680 copy of SH10030 26.475991 90.262671 58.369331 1.766184716 0.166638 176 5 SH9646 9646 RUF4 RUF4 6 21 27.770134 96.524283 62.1472085 1.793421626 0.166546 26 101 SH3452 3452 Trp1 91-106 + 3' flank 91 26.559612 90.838938 58.699275 1.768632737 0.16646 161 10 SH17365 17365 YIL052C_9_257061_256224_INTRON_38_509 intron 124.411282 347.917359 124.411282 224.506077 174.4586795 2.241692581 0.166441 124 93 SH18967 18967 YOR096W_15_505793_506766_INTRON_145_545 5' exon 28.282193 126.076402 28.282193 98.794209 63.538201 1.803034914 0.166353 81 32 SH18559 18559 YMR292W_13_854795_855293_INTRON_23_104 intron 25.917019 111.508602 25.917019 86.591583 56.254301 1.750155733 0.16634 172 53 SH15654 15654 YBR189W_2_604466_605466_INTRON_8_420 intron 28.76675 127.956439 28.76675 100.189689 64.4782195 1.809413036 0.166298 41 55 SH5051 5051 snR10 3' 528.593966 727.968822 628.281394 2.798154199 0.166263 172 27 SH937 937 Gly1 5' flank 26.651708 91.484471 59.0680895 1.771352924 0.166171 8 32 SH14982 14982 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 30.101538 131.74881 30.101538 102.647272 66.374405 1.822000641 0.166067 18 102 SH6153 6153 snR39B 3' 25.158748 81.663839 53.4112935 1.727633096 0.16603 43 89 SH703 703 Gln3 tRNA 46 58 39.10392 114.74712 76.92552 1.886070441 0.165986 187 17 SH11483 11483 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4301 4314 34.357836 108.719644 71.53874 1.854541287 0.16595 186 2 SH919 919 Glu3 3' flank 26.597691 91.149602 58.8736465 1.769920936 0.165869 24 5 SH16282 16282 YDR447C_4_1355542_1354818_INTRON_4_317 intron 25.443593 107.999964 25.443593 83.556371 54.499982 1.736396359 0.165854 197 47 SH2802 2802 Pro6 101-102 + 3' flank 101 24.298016 76.140238 50.219127 1.700869159 0.165805 163 15 SH1578 1578 Leu4 tRNA-intron/exon 61 76 131.341684 233.423194 182.382439 2.260983019 0.165727 44 83 SH21191 21191 YOL120C spliced 25.881106 86.412527 56.1468165 1.749325137 0.165708 35 95 SH6166 6166 snR39B 3' 26.402048 89.856852 58.12945 1.764396214 0.165686 159 71 SH1551 1551 Leu4 5' flank 24.492885 77.387841 50.940363 1.707062035 0.165683 200 17 SH558 558 Cys1 3' flank 25.779759 85.753045 55.766402 1.746372625 0.165679 166 22 SH8597 8597 snR19 / U1 RNA U1 481 497 27.788057 96.680882 62.2344695 1.794030992 0.165519 52 25 SH1168 1168 His1 61-72 + 3' flank 61 78.982687 165.822962 122.4028245 2.087791439 0.165509 194 12 SH19651 19651 SIR1 2.2 26.320502 89.331808 57.826155 1.762124316 0.165488 32 89 SH5207 5207 snR13 3' 25.288009 82.564276 53.9261425 1.731799355 0.165437 99 86 SH4379 4379 telomerase RNA telomerase 931 943 705.004969 937.593658 821.2993135 2.91450146 0.16543 179 3 SH13601 13601 MT ATP8/AAP1 ATP8 26.061053 112.685154 26.061053 87.624101 56.842577 1.754673759 0.165375 123 7 SH6205 6205 snR40 86-97 + 3' 86 26.778175 92.273889 59.526032 1.774706933 0.165348 131 99 SH4195 4195 telomerase RNA telomerase 11 27 436.714566 616.889203 526.8018845 2.72164732 0.165343 84 20 SH11977 11977 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6771 6789 570.148722 778.250504 674.199613 2.828788499 0.165265 16 103 SH7879 7879 snoRNA cluster1 snR73 25.866146 111.225799 25.866146 86.359653 56.1128995 1.74906271 0.1652 67 25 SH4085 4085 SRP RNA SRP RNA 316 328 37.093833 112.236635 74.665234 1.873118431 0.165136 132 21 SH10729 10729 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 531 547 27.919364 97.290305 62.6048345 1.796607872 0.165104 19 79 SH21609 21609 copy of SH7090 26.497278 90.547767 58.5225225 1.767323037 0.1651 146 82 SH8715 8715 LSR1 / U2 RNA U2 216 233 31.480192 105.070728 68.27546 1.834264635 0.165088 57 63 SH850 850 Glu2 tRNA 16 30 1728.474692 2085.625305 1907.049999 3.280362079 0.165068 154 14 SH20918 20918 YLR344W spliced 26.637898 91.497518 59.067708 1.771350119 0.165042 132 56 SH1047 1047 Gly3 5' flank 25.434405 83.572372 54.5033885 1.736423503 0.164974 147 102 SH1522 1522 Leu3 tRNA 81 97 11202.93901 10774.1622 10988.5506 4.040940413 0.164964 168 33 SH5825 5825 snR35 snR35 311 328 24.848525 79.737325 52.292925 1.718442935 0.16491 136 66 SH14446 14446 MT 21S rRNA 21S rRNA3 27.361804 121.218476 27.361804 94.856672 61.109238 1.786106868 0.164895 89 14 SH16002 16002 YDL137W_4_216158_217074_INTRON_1_332 intron 286.835673 715.522818 286.835673 429.687145 358.261409 2.55420003 0.164892 39 61 SH12215 12215 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 36.235766 146.408807 36.235766 111.173041 73.7044035 1.867493436 0.164882 58 18 SH20371 20371 YER133W spliced 55.584027 135.952129 95.768078 1.981220772 0.164879 155 89 SH8655 8655 LSR1 / U2 RNA 5' 25.66994 85.111145 55.3905425 1.743435619 0.164846 77 46 SH21541 21541 copy of SH4151 29.542919 101.69665 65.6197845 1.8170348 0.164836 192 16 SH7216 7216 snR64 3' 30.333501 103.135081 66.734291 1.824349051 0.164823 124 21 SH2865 2865 Pro7 3' flank 28.363331 99.274664 63.8189975 1.804949978 0.164784 209 20 SH17451 17451 YIL148W_9_68708_69528_INTRON_9_442 intron 43.254403 162.471524 43.254403 120.217121 81.735762 1.912412116 0.164755 188 63 SH19308 19308 YPL198W_16_173151_174701_INTRON_12_420 intron 24.37862 100.114703 24.37862 76.736083 50.5573515 1.703784315 0.164744 9 99 SH14055 14055 MT COB Cytbi4 23.711602 95.451334 23.711602 72.739732 48.225667 1.683278243 0.164737 25 8 SH6650 6650 snR48 snR48 76 93 31.643992 105.310443 68.4772175 1.835546105 0.164615 117 52 SH4010 4010 SRP RNA 5' 25.784056 85.87723 55.830643 1.74687263 0.164587 197 54 SH2711 2711 Pro5 5' flank 41.810107 118.353387 80.081747 1.903533539 0.164569 162 52 SH7358 7358 snR68 snR68 11 28 28.365033 99.300154 63.8325935 1.80504249 0.164554 192 78 SH2225 2225 Phe1 tRNA 1 13 29.524966 101.68067 65.602818 1.816922495 0.164523 101 93 SH21527 21527 copy of SH3562 26.880147 92.779218 59.8296825 1.776916698 0.16451 50 85 SH9057 9057 snR14 / U4 RNA 5' 30.556964 103.556111 67.0565375 1.826441125 0.164499 130 41 SH1907 1907 Lys1 5' flank - tRNA9 9 27.082589 93.666725 60.374657 1.780854676 0.164462 117 12 SH4407 4407 telomerase RNA telomerase 1071 1083 191.347255 309.523872 250.4355635 2.398696002 0.164453 37 88 SH18990 18990 YOR096W_15_505793_506766_INTRON_145_545 3' exon 26.725896 117.837274 26.725896 92.111378 59.418637 1.773922685 0.164446 209 15 SH4450 4450 telomerase RNA 1286-1301 + 3' 1286 32.664119 106.647964 69.6560415 1.84295879 0.164436 102 92 SH5317 5317 snR30 snR30 436 448 46.647186 124.57078 85.608983 1.932519338 0.16439 170 11 SH3528 3528 Tyr2 5' flank 24.468793 77.340584 50.9046885 1.706757784 0.164368 206 19 SH995 995 Gly2 5' flank 26.277262 89.146928 57.712095 1.76126684 0.164366 125 42 SH13940 13940 MT COB Cytbi3 26.291144 114.533704 26.291144 89.24256 57.766852 1.761678701 0.16433 49 33 SH19078 19078 YOR293W_15_867094_867848_INTRON_53_489 intron 41.408901 158.26256 41.408901 117.853659 79.63128 1.901083697 0.164321 173 29 SH14627 14627 MT 21S rRNA Sce1 endonuc 26.941988 119.004848 26.941988 93.06286 60.002424 1.778168796 0.164321 202 19 SH19536 19536 CBP1 1.2 35.936643 110.826748 73.3816955 1.865587742 0.164277 199 15 SH6949 6949 snR58 3' 26.044009 87.614487 56.829248 1.754571909 0.164232 121 33 SH12886 12886 MT COX1 COX1ai1 26.498661 116.138711 26.498661 90.64005 58.5693555 1.767670445 0.164206 190 56 SH11850 11850 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6136 6152 68.387975 152.283171 110.335573 2.042715555 0.164063 115 78 SH4070 4070 SRP RNA SRP RNA 241 257 46.7275 124.700592 85.714046 1.933051996 0.164007 172 104 SH11574 11574 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4756 4773 197.658982 317.580015 257.6194985 2.41097873 0.164003 4 66 SH11415 11415 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3961 3980 142.883278 248.288712 195.585995 2.291337754 0.163975 142 78 SH12610 12610 MT_15S MT_15S 26.88217 118.709419 26.88217 92.827249 59.8547095 1.777098327 0.163971 115 81 SH18418 18418 YMR133W_13_536206_537608_INTRON_1243_1358 intron 30.836182 133.923899 30.836182 104.087717 67.4619495 1.829058887 0.163962 137 69 SH8206 8206 snoRNA cluster 3; intergenic/snR51 23.437033 93.633876 23.437033 71.196843 47.316938 1.675016633 0.163925 208 44 SH12937 12937 MT COX1 COX1ai2 26.76902 118.108883 26.76902 92.339863 59.5544415 1.774914156 0.163886 67 102 SH19324 19324 YPL218W_16_138697_139408_INTRON_29_167 exon/intron 24.679228 102.426298 24.679228 78.74707 51.713149 1.713600984 0.163664 187 23 SH18675 18675 YNL112W_14_413636_416278_INTRON_1274_2275 intron 25.808986 110.936966 25.808986 86.12798 55.968483 1.747943536 0.163591 84 40 SH7039 7039 snR62 5' - 7 -14 7 25.767556 85.857611 55.8125835 1.746732126 0.163586 92 9 SH11985 11985 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6811 6829 81.019725 168.612308 124.8160165 2.096270318 0.163545 42 54 SH9632 9632 RUF4 5' 33.232286 107.424801 70.3285435 1.847131623 0.163516 59 99 SH16377 16377 YER003C_5_159117_157735_INTRON_32_124 3' exon 633.305668 1486.594547 633.305668 854.288879 743.7972735 2.871454582 0.163508 203 94 SH7695 7695 snoRNA cluster1 intergenic 33.659773 140.631709 33.659773 107.971936 70.8158545 1.8501305 0.163452 189 13 SH13139 13139 MT COX1 intronic 27.235419 120.650732 27.235419 94.415313 60.825366 1.784084731 0.163381 127 81 SH1471 1471 Leu2 3' flank 26.168677 88.520352 57.3445145 1.75849188 0.16333 207 58 SH8008 8008 snoRNA cluster 2 intergenic 26.394972 115.424781 26.394972 90.029809 58.2123905 1.765015434 0.1633 74 44 SH9209 9209 snR6 / U6 RNA 5' 33.508696 107.788363 70.6485295 1.849103127 0.163296 150 95 SH2859 2859 Pro7 101-103 + 3' flank 101 25.097066 81.49557 53.296318 1.726697207 0.163265 11 4 SH21033 21033 YMR125W spliced 2094.523224 2475.634833 2285.079029 3.358901225 0.163255 160 72 SH9470 9470 RUF2 RUF2 191 205 28.577121 100.002277 64.289699 1.808141392 0.163202 4 38 SH8830 8830 LSR1 / U2 RNA U2 791 808 26.020764 87.557519 56.7891415 1.754265303 0.16316 91 102 SH20525 20525 YGR118W spliced 29.369177 101.46916 65.4191685 1.81570502 0.163148 55 57 SH21742 21742 copy of SH12552 26.797349 92.517493 59.657421 1.775664475 0.16314 127 88 SH10167 10167 RUF6 RUF6 681 695 33.34549 107.588952 70.467221 1.847987145 0.163136 41 64 SH10587 10587 RUF8 RUF8 861 876 29.853819 102.358145 66.105982 1.820240761 0.163106 210 96 SH10307 10307 RUF7 RUF7 146 158 10283.48279 10005.69795 10144.59037 4.006234515 0.163037 126 48 SH5350 5350 snR30 601 + 3' 601 28.047318 98.016847 63.0320825 1.799561656 0.162987 112 31 SH2628 2628 Pro3 tRNA 91 103 65.101594 148.200599 106.6510965 2.027965325 0.162946 95 31 SH11615 11615 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4961 4978 1480.07777 1818.262644 1649.170207 3.21726548 0.162921 193 25 SH20976 20976 YML034W spliced 57.979343 139.145278 98.5623105 1.993710876 0.16291 196 80 SH6149 6149 snR39B 86-96 + 3' 86 39.596351 115.578459 77.587405 1.889791227 0.162876 178 42 SH19551 19551 CBP1 2.2 31.679294 105.448934 68.564114 1.836096868 0.162808 141 75 SH6314 6314 snR42 351 + 3' 351 24.56607 78.090808 51.328439 1.710358057 0.162796 64 28 SH1002 1002 Gly2 tRNA 1 13 92.232865 183.2755 137.7541825 2.139104794 0.162765 159 41 SH8587 8587 snR19 / U1 RNA U1 431 447 26.616427 91.571113 59.09377 1.771541698 0.162717 22 3 SH5172 5172 snR13 snR13 16 37 106.945805 202.460653 154.703229 2.189499378 0.162704 68 79 SH12747 12747 MT COX1 COX1ai1 282.595238 706.508152 282.595238 424.912914 353.754076 2.548701453 0.162701 42 89 SH1696 1696 Leu6 tRNA 46 58 27.504171 95.645809 61.57499 1.78940435 0.162696 110 60 SH1271 1271 Ile2 tRNA-intron 51 66 26.820104 92.649155 59.7346295 1.776226174 0.162695 132 47 SH2719 2719 Pro5 5' flank 33.42386 107.713708 70.568784 1.848612634 0.162657 118 93 SH13950 13950 MT COB Cytbi3 25.433265 108.201527 25.433265 83.768262 54.6007635 1.737198716 0.16265 104 92 SH8573 8573 snR19 / U1 RNA U1 361 373 33.84807 108.253601 71.0508355 1.851569189 0.162621 46 63 SH10790 10790 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 836 854 24.79479 79.582259 52.1885245 1.717575018 0.162594 192 4 SH18220 18220 YML026C_13_223828_222987_INTRON_48_448 5' exon 26.650617 117.47462 26.650617 91.824003 59.23731 1.772595329 0.162482 97 87 SH9489 9489 RUF2 3' 31.69905 105.493044 68.596047 1.836299089 0.162452 49 99 SH20046 20046 YBR191W spliced 104.869114 199.762714 152.315914 2.182745281 0.162429 132 50 SH17863 17863 YLL050C_12_40413_39803_INTRON_15_193 intron 25.562623 109.191516 25.562623 84.628893 55.095758 1.741118162 0.16238 77 49 SH2657 2657 Pro4 5' flank 25.607741 84.922719 55.26523 1.742451982 0.162371 69 7 SH1212 1212 Ile1 tRNA 21 33 99.961714 193.393235 146.6774745 2.166363424 0.16237 45 100 SH4923 4923 snR9 snR9 21 40 24.906753 80.328522 52.6176375 1.721131345 0.162365 202 54 SH1428 1428 Leu2 5' flank 26.466797 90.600105 58.533451 1.76740413 0.162337 143 13 SH5698 5698 snR34 snR34 411 426 26.799605 92.586252 59.6929285 1.775922886 0.162329 149 51 SH7153 7153 snR63 3' 26.638768 91.762013 59.2003905 1.772324571 0.162291 123 27 SH3982 3982 RNase MRP RNaseMRP 326 340 30.256806 103.136652 66.696729 1.824104535 0.162259 36 33 SH11791 11791 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5841 5856 194.931692 314.482468 254.70708 2.406041017 0.162256 196 28 SH16460 16460 YER093C-A_5_348396_347908_INTRON_125_199 5' exon 33.022195 139.243454 33.022195 107.221259 70.121727 1.845852604 0.162256 159 44 SH7375 7375 snR68 snR68 96 113 30.878954 104.259369 67.5691615 1.82974853 0.162246 210 68 SH1650 1650 Leu5 3' flank 25.333582 83.143405 54.2384935 1.734307618 0.162229 201 101 SH1639 1639 Leu5 tRNA-intron/exon 61 77 37.21547 112.549447 74.8824585 1.874380094 0.162206 128 39 SH12808 12808 MT COX1 COX1ai1 24.963621 104.68207 24.963621 80.718449 52.841035 1.722971316 0.162137 196 35 SH15115 15115 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " orf 3 / 3' 24.258273 99.440418 24.258273 76.182145 50.220209 1.700878516 0.162121 172 8 SH3130 3130 Ser4 tRNA 56 72 71.024505 155.860614 113.4425595 2.054776017 0.162109 31 38 SH4287 4287 telomerase RNA telomerase 471 483 192.349259 311.244433 251.796846 2.401050286 0.162102 63 38 SH16264 16264 YDR424C_4_1319830_1319376_INTRON_26_121 intron/exon 26.55748 116.791084 26.55748 91.233604 58.895542 1.770082423 0.162081 95 53 SH11523 11523 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4501 4519 79.512347 166.825823 123.169085 2.090501715 0.162038 45 64 SH5715 5715 snR34 snR34 496 513 27.036234 93.644805 60.3405195 1.780609045 0.162001 59 27 SH5402 5402 snR31 snR31 76 88 29.308474 101.420575 65.3645245 1.815342106 0.161978 113 33 SH21823 21823 copy of SH16003 206.209891 328.780722 267.4953065 2.427316166 0.161974 57 65 SH2825 2825 Pro7 5' flank 26.936321 93.21269 60.0745055 1.778690205 0.161932 30 45 SH19059 19059 YOR234C_15_779404_778554_INTRON_20_546 intron/exon 24.55349 101.634608 24.55349 78.081118 51.317304 1.710263832 0.161926 3 68 SH16217 16217 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 28.009726 124.943579 28.009726 97.933853 62.9717895 1.799146035 0.161906 186 100 SH15792 15792 YDL029W_4_399336_400634_INTRON_23_145 3' exon 38.548591 151.792646 38.548591 114.244055 76.396323 1.883072456 0.161876 87 47 SH10686 10686 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 316 333 25.59056 84.854238 55.222399 1.74211527 0.161875 203 98 SH1646 1646 Leu5 tRNA 96 113 69.171772 153.487135 111.3294535 2.046610077 0.161873 156 33 SH4948 4948 snR9 snR9 146 160 31.250304 104.931819 68.0910615 1.833090105 0.161835 54 65 SH4246 4246 telomerase RNA telomerase 266 280 29.499587 101.780323 65.639955 1.817168275 0.161816 35 69 SH6212 6212 snR40 3' 25.583274 84.817627 55.2004505 1.741942622 0.161752 26 6 SH14832 14832 MT tRNA Asp 5' 25.218933 106.646767 25.218933 82.427834 53.8233835 1.730970995 0.16174 212 74 SH1811 1811 Leu8 tRNA 81 96 28.069722 98.220979 63.1453505 1.800341378 0.161622 203 8 SH21108 21108 YNL069C spliced 26.251588 89.22809 57.739839 1.761475569 0.161611 97 94 SH1962 1962 Lys2 tRNA 11 23 48.611648 127.302039 87.9568435 1.944269635 0.161569 20 20 SH10957 10957 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1671 1689 407.303472 582.125957 494.7147145 2.694354828 0.161546 163 87 SH6502 6502 snR46 snR46 1 13 28.713704 100.344206 64.528955 1.809754632 0.161546 5 64 SH10909 10909 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1431 1448 43894.51012 35899.86944 39897.18978 4.600942307 0.161466 13 23 SH899 899 Glu3 tRNA 6 23 13139.11601 12423.54605 12781.33103 4.106576083 0.161409 210 13 SH6199 6199 snR40 snR40 56 71 86.210508 175.584148 130.897328 2.116930781 0.161385 122 49 SH11904 11904 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6406 6424 525.7436 726.844586 626.294093 2.796778316 0.161374 65 100 SH20562 20562 YHR001W-A spliced 28.185556 98.754639 63.4700975 1.802569165 0.16135 84 12 SH9086 9086 snR14 / U4 RNA U4 46 62 25.865979 86.708704 56.2873415 1.750410737 0.161256 102 65 SH19402 19402 YPR063C_16_678315_677807_INTRON_42_127 intron 39.996823 155.198846 39.996823 116.202023 78.099423 1.892647825 0.161217 51 91 SH4125 4125 SRP RNA SRP RNA 516 530 33.241868 107.558503 70.4001855 1.847573803 0.161178 43 69 SH328 328 Arg5 5' flank 26.9996 93.548841 60.2742205 1.780131603 0.161123 43 41 SH5593 5593 snR33 3' 31.211 104.917041 68.0640205 1.832917599 0.161098 12 83 SH11988 11988 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S/3'ETS 6826 6848 24.221719 76.043099 50.132409 1.700118574 0.161037 195 102 SH21877 21877 copy of SH18252 25.00929 81.115891 53.0625905 1.724788448 0.160969 180 42 SH10218 10218 RUF6 RUF6 936 953 25.513909 84.436411 54.97516 1.740166502 0.160955 52 14 SH10392 10392 RUF7 3' 35.265181 110.148246 72.7067135 1.861574514 0.160942 129 76 SH8756 8756 LSR1 / U2 RNA U2 421 438 38.969859 114.863769 76.916814 1.886021287 0.160883 164 81 SH2137 2137 Met1 71-73 + 3' flank 71 26.780664 92.608559 59.6946115 1.77593513 0.160883 137 92 SH4051 4051 SRP RNA SRP RNA 146 158 49.184831 128.082684 88.6337575 1.947599161 0.160863 101 98 SH21795 21795 copy of SH14860 24.935496 80.646697 52.7910965 1.722560683 0.160812 97 64 SH20585 20585 YHR021C spliced 28.884223 100.702155 64.793189 1.811529356 0.160768 28 49 SH16285 16285 YDR447C_4_1355542_1354818_INTRON_4_317 3' exon 31.066779 134.746952 31.066779 104.680173 67.873476 1.831700091 0.160731 204 74 SH12022 12022 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6996 7014 30.082644 102.905286 66.493965 1.82278223 0.160709 170 40 SH10403 10403 RUF8 5' 26.917788 93.225043 60.0714155 1.778667866 0.160654 158 93 SH8490 8490 snR19 / U1 RNA 5' 33.57503 108.01324 70.794135 1.84999728 0.160601 180 9 SH21919 21919 copy of SH20199 30.037891 102.830111 66.434001 1.822390409 0.160595 163 104 SH5096 5096 snR11 snR11 81 97 37.398971 112.868043 75.133507 1.875833661 0.160572 41 95 SH6857 6857 snR56 5' 23.174436 69.920626 46.547531 1.66789665 0.160509 20 50 SH10860 10860 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1186 1204 40.714946 117.187399 78.9511725 1.897358584 0.160413 41 31 SH1817 1817 Leu8 3' flank 25.529993 84.58816 55.0590765 1.740828923 0.160409 204 5 SH8624 8624 snR19 / U1 RNA U1 616 632 48.332214 127.018747 87.6754805 1.942878155 0.160408 190 99 SH7337 7337 snR68 5' 27.583831 96.169249 61.87654 1.791526021 0.160399 200 95 SH8905 8905 LSR1 / U2 RNA 1166-1175 + 3' 1166 23.338568 70.881828 47.110198 1.67311493 0.160345 138 36 SH6620 6620 snR48 5' 24.226517 76.137893 50.182205 1.70054974 0.160177 101 21 SH4104 4104 SRP RNA SRP RNA 411 423 35.304522 110.247156 72.775839 1.861987221 0.160046 23 64 SH21053 21053 YMR143W spliced 24.327366 76.787362 50.557364 1.703784422 0.160045 13 90 SH14466 14466 MT 21S rRNA 21S rRNA3 28.183385 126.029919 28.183385 98.846534 63.5149595 1.802876025 0.16004 121 40 SH10560 10560 RUF8 RUF8 726 744 25.820098 86.517344 56.168721 1.749494535 0.160017 38 13 SH1748 1748 Leu7 tRNA 36 51 75.275512 161.510845 118.3931785 2.07332668 0.16001 150 47 SH785 785 Glu1 5' flank 24.7132 79.272556 51.992878 1.715943858 0.159961 75 40 SH17598 17598 YJL191W_10_73786_74610_INTRON_11_418 3' exon 25.542417 109.252626 25.542417 84.710209 55.126313 1.741358947 0.159933 86 81 SH1483 1483 Leu2 3' flank 68.895951 153.303084 111.0995175 2.045712173 0.159799 49 76 SH14656 14656 MT 21S rRNA 21S rRNA4 37.228421 148.927725 37.228421 112.699304 74.9638625 1.874851955 0.15978 42 33 SH9581 9581 RUF3 RUF3 291 307 25.405211 83.834756 54.6199835 1.737351565 0.159762 154 99 SH5073 5073 snR11 5' 25.150579 82.153723 53.652151 1.729587138 0.159687 203 25 SH18395 18395 YMR125W_13_517538_520445_INTRON_26_347 exon/intron 757.589325 1759.306884 757.589325 1002.717559 880.153442 2.944558392 0.159675 102 70 SH6470 6470 snR45 3' 30.043466 102.891544 66.467505 1.822609377 0.159656 100 98 SH2096 2096 Lys4 3' flank 23.251089 70.424337 46.837713 1.670595681 0.159649 2 100 SH15539 15539 YBR078W_2_393082_394818_INTRON_59_388 intron 24.088427 98.439517 24.088427 75.35109 49.7197585 1.696529011 0.159645 13 40 SH5246 5246 snR30 snR30 81 97 25.279058 83.007669 54.1433635 1.733545232 0.159634 10 63 SH3855 3855 RNaseP RNaseP 241 253 1881.723042 2257.095682 2069.409362 3.31584641 0.15963 93 35 SH5535 5535 snR33 5' 24.378728 77.148639 50.7636835 1.705553128 0.159628 133 84 SH18730 18730 YNL147W_14_350937_351380_INTRON_19_138 intron 49.407662 176.857568 49.407662 128.449906 88.928784 1.949042354 0.159612 97 8 SH8392 8392 snoRNA cluster 5 snR190 28.774087 128.33556 28.774087 100.561473 64.66778 1.810687952 0.159575 214 52 SH8147 8147 snoRNA cluster 3; intergenic 23.928184 97.331705 23.928184 74.403521 49.1658525 1.691663574 0.159545 171 56 SH10102 10102 RUF6 RUF6 356 374 26.560124 91.491927 59.0260255 1.771043541 0.159515 117 9 SH6299 6299 snR42 snR42 276 288 36.574451 111.894699 74.234575 1.870606226 0.159496 58 42 SH10602 10602 RUF8 RUF8 936 951 29.178228 101.315044 65.246636 1.814558125 0.159479 49 100 SH1837 1837 Leu9 5' flank 24.883302 80.422353 52.6528275 1.721421698 0.159432 118 78 SH7447 7447 snR69 3' 28.588504 100.224014 64.406259 1.808928074 0.159428 38 82 SH8346 8346 snoRNA cluster4 snR53 25.209591 106.77604 25.209591 82.566449 53.88802 1.731492227 0.159419 211 46 SH14184 14184 MT COB Exon6 24.431948 100.938364 24.431948 77.506416 50.969182 1.707307664 0.159413 14 37 SH8025 8025 snoRNA cluster 2 snR55 29.278346 129.787374 29.278346 101.509028 65.393687 1.815535824 0.159306 82 22 SH5976 5976 snR36 snR36 336 354 2412.473587 2811.195643 2611.834615 3.416945673 0.159284 30 8 SH7204 7204 snR64 snR64 86 98 26.653593 92.146155 59.399874 1.773785524 0.159282 23 55 SH17608 17608 YJL205C-A_10_50443_50139_INTRON_33_175 intron/exon 24.29999 99.974265 24.29999 76.674275 50.4871325 1.703180705 0.159281 18 52 SH2919 2919 Pro8 3' flank 26.775933 92.708371 59.742152 1.776280862 0.159226 186 7 SH15923 15923 YDL108W_4_267697_268698_INTRON_29_109 5' exon 28.677228 128.079342 28.677228 100.402114 64.539671 1.809826747 0.159186 11 41 SH20650 20650 YIL004C spliced 29.712914 102.314065 66.0134895 1.81963269 0.159179 30 18 SH19761 19761 Negative Control 146.369514 253.420452 199.894983 2.300801894 0.159095 152 28 SH8259 8259 snoRNA cluster4 5' 25.224996 106.925708 25.224996 82.700712 53.962854 1.732094911 0.159044 66 18 SH4288 4288 telomerase RNA telomerase 476 492 36.598713 111.951435 74.275074 1.870843093 0.159019 141 92 SH18543 18543 YMR230W_13_732413_733140_INTRON_53_462 intron 26.931374 119.33753 26.931374 93.406156 60.168765 1.779371097 0.158993 15 27 SH1332 1332 Ile3 tRNA-intron 41 57 26.754063 92.629913 59.691988 1.775916043 0.158988 41 3 SH9733 9733 RUF4 RUF4 441 457 25.194641 82.507331 53.850986 1.73119366 0.158959 104 58 SH11908 11908 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6426 6444 35378.43535 29744.71207 32561.57371 4.512705386 0.158884 9 8 SH9202 9202 snR7 U5 RNA 3' 24.845284 80.221683 52.5334835 1.7204362 0.15887 206 16 SH4619 4619 snR3 snR3 11 28 70.508395 155.474285 112.99134 2.053045159 0.158854 214 97 SH14922 14922 MT tRNA Tyr 3' 26.349541 115.501431 26.349541 90.15189 58.2507155 1.765301264 0.158688 4 11 SH1855 1855 Leu9 tRNA 16 31 76.997669 163.886036 120.4418525 2.080777427 0.158658 142 4 SH15882 15882 YDL082W_4_308423_309387_INTRON_5_369 intron 37.456802 149.507749 37.456802 113.050947 75.2538745 1.876528865 0.158565 164 20 SH871 871 Glu2 3' flank 29.797272 102.505166 66.151219 1.820537852 0.158503 105 16 SH7207 7207 snR64 101 + 3' 101 25.668352 85.660397 55.6643745 1.745577333 0.158458 176 7 SH9877 9877 RUF5-1 RUF5-1 191 206 27.559464 96.209361 61.8844125 1.791581272 0.158444 3 2 SH11895 11895 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6361 6379 162.298561 273.760041 218.029301 2.338514862 0.158437 197 53 SH20472 20472 YGL187C spliced 66.262319 150.039311 108.150815 2.034029797 0.158425 141 21 SH14049 14049 MT COB Cytbi4 27.165354 120.649772 27.165354 94.484418 60.824886 1.784081304 0.158299 133 99 SH7183 7183 snR64 5' 414.343027 592.084058 503.2135425 2.70175232 0.158293 147 34 SH11913 11913 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6451 6470 534.368457 738.823121 636.595789 2.803863761 0.15807 8 53 SH6634 6634 snR48 5' - 16 -4 16 27.690966 96.821127 62.2560465 1.794181538 0.158033 166 55 SH4427 4427 telomerase RNA telomerase 1171 1192 24.45337 77.757757 51.1055635 1.708468181 0.158009 102 90 SH21766 21766 copy of SH13601 25.095504 81.934811 53.5151575 1.728476808 0.158007 134 46 SH6645 6645 snR48 snR48 51 68 43.725573 121.246522 82.4860475 1.916380494 0.157972 49 30 SH1952 1952 Lys2 5' flank 24.869364 80.455881 52.6626225 1.721502482 0.157952 190 102 SH2691 2691 Pro4 3' flank 27.439514 95.71801 61.578762 1.789430953 0.157943 7 38 SH20324 20324 YER056C-A spliced 38.83591 114.855584 76.845747 1.885619837 0.157933 54 75 SH7075 7075 snR62 3' 27.93975 97.929998 62.934874 1.798891367 0.157927 128 43 SH19261 19261 YPL143W_16_282121_282969_INTRON_20_544 intron 24.855341 104.223071 24.855341 80.36773 52.6115355 1.721080977 0.157912 61 82 SH7140 7140 snR63 snR63 206 222 68.581401 153.053117 110.817259 2.044607404 0.157894 117 43 SH12811 12811 MT COX1 COX1ai1 81.0232 249.18312 81.0232 169.15992 125.09156 2.097228009 0.157863 140 9 SH1918 1918 Lys1 tRNA 46 60 747.321587 991.898746 869.6101665 2.939324608 0.157858 11 66 SH13582 13582 MT COX1 Exon 6 41.787329 159.513314 41.787329 118.725985 80.256657 1.904481066 0.157833 14 83 SH6694 6694 snR49 5' - 12 -4 12 26.146371 88.872367 57.509369 1.759738602 0.157832 122 48 SH8785 8785 LSR1 / U2 RNA U2 566 585 25.49786 84.612553 55.0552065 1.740798396 0.157721 167 101 SH21398 21398 Pro2_7 spliced 180.98467 297.638758 239.311714 2.378963957 0.157716 112 46 SH11733 11733 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5551 5564 33795.7412 28592.44596 31194.09358 4.494072371 0.157714 136 53 SH21372 21372 Leu8_9 spliced 28.316848 99.620703 63.9687755 1.805968037 0.157707 5 103 SH8992 8992 snR17a / U3a U3a 246 262 26.695178 92.468401 59.5817895 1.775113543 0.157663 65 50 SH17938 17938 YLR093C_12_327416_326514_INTRON_17_157 intron 25.135528 106.365681 25.135528 82.230153 53.6828405 1.729835487 0.157643 117 99 SH4603 4603 snR3 5' 25.305967 83.359846 54.3329065 1.735062938 0.15764 196 75 SH8460 8460 snoRNA cluster 5 snR128 35.333533 144.748001 35.333533 110.414468 72.8740005 1.862572611 0.15764 49 15 SH18284 18284 YML067C_13_140214_139063_INTRON_32_124 intron 26.622763 117.717526 26.622763 92.094763 59.358763 1.773484842 0.157614 12 9 SH12286 12286 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.938021 150.640136 37.938021 113.702115 75.820068 1.87978417 0.157579 26 102 SH21047 21047 YMR142C spliced 28.652959 100.444898 64.5489285 1.809889037 0.157536 204 28 SH6831 6831 snR52 snR52 61 80 28.123546 98.776054 63.4498 1.802430257 0.157526 28 41 SH18753 18753 YNL162W_14_331319_332151_INTRON_5_516 intron 37.550332 149.776083 37.550332 113.225751 75.3880415 1.877302461 0.157508 97 67 SH1115 1115 Gly4 tRNA 51 66 28.75632 100.639707 64.6980135 1.810890946 0.157492 143 89 SH3736 3736 Val4 5' flank 31.827067 105.917216 68.8721415 1.838043587 0.157445 166 91 SH6975 6975 snR60 5' 27.83528 97.509472 62.672376 1.79707616 0.157377 123 52 SH5247 5247 snR30 snR30 86 103 27.344723 95.349431 61.347077 1.787793875 0.157286 38 93 SH1643 1643 Leu5 tRNA 81 97 5495.834379 5794.730152 5645.282266 3.751685662 0.157285 132 83 SH15778 15778 YDL012C_4_431513_431104_INTRON_46_131 intron 25.529483 109.386706 25.529483 84.857223 55.193353 1.741886778 0.157275 112 104 SH15478 15478 YBL091C-A_2_46858_46559_INTRON_35_122 intron/exon 25.580146 109.769473 25.580146 85.189327 55.3847365 1.743390094 0.157256 202 71 SH9363 9363 RUF1 RUF1 391 410 24.509311 78.179878 51.3445945 1.710494728 0.157243 190 79 SH16988 16988 YGR118W_7_726968_727725_INTRON_66_385 intron 37.825099 150.409226 37.825099 113.584127 75.704613 1.879122344 0.15719 123 50 SH13249 13249 MT COX1 COX1-ai4 27.409597 122.053673 27.409597 95.644076 61.5268365 1.789064586 0.15717 14 49 SH7984 7984 snoRNA cluster 2 snR57 27.325176 121.60224 27.325176 95.277064 61.30112 1.787468409 0.157101 62 55 SH15404 15404 YBL050W_2_125087_126081_INTRON_31_146 3' exon 26.523569 116.995032 26.523569 91.471463 58.997516 1.770833727 0.157101 18 69 SH9628 9628 RUF4 5' 28.977795 101.072031 65.024913 1.81307978 0.1571 183 84 SH6772 6772 snR50 snR50 36 55 24.220484 76.352535 50.2865095 1.701451491 0.156977 25 57 SH6861 6861 snR56 5' 24.281021 76.740379 50.5107 1.703383387 0.15695 52 83 SH4802 4802 snR5 snR5 181 197 67.36119 151.548124 109.454657 2.039234244 0.156938 90 70 SH13592 13592 MT ATP8/AAP1 5' 25.140863 106.468086 25.140863 82.327223 53.734043 1.730249519 0.156925 59 76 SH20305 20305 YER003C spliced 36.278623 111.667292 73.9729575 1.869072983 0.156814 22 11 SH2222 2222 Phe1 5' flank - tRNA2 2 26.582343 91.896977 59.23966 1.772612557 0.156807 34 93 SH18736 18736 YNL162W_14_331319_332151_INTRON_5_516 exon/intron 28.759511 128.443732 28.759511 100.684221 64.721866 1.81105103 0.15677 148 32 SH20607 20607 YHR077C spliced 878.600168 1145.293814 1011.946991 3.005157763 0.156748 114 12 SH13568 13568 MT COX1 Exon 6 30.986123 134.746364 30.986123 104.760241 67.873182 1.83169821 0.156687 121 70 SH12413 12413 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.718648 138.837717 32.718648 107.119069 69.9188585 1.844594329 0.156683 178 3 SH19162 19162 YPL075W_16_412249_415357_INTRON_9_759 intron 25.979749 112.850723 25.979749 87.870974 56.9253615 1.755305797 0.156662 62 30 SH15769 15769 YCR097W_3_293828_294314_INTRON_106_159 intron 26.519656 117.007053 26.519656 91.487397 59.0035265 1.770877969 0.15665 55 70 SH11111 11111 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2441 2461 26.900015 93.441939 60.170977 1.779387063 0.156628 210 58 SH4897 4897 snR8 3' 28.50571 100.219654 64.362682 1.808634133 0.156605 115 90 SH13747 13747 MT COB Exon1 27.57837 123.012006 27.57837 96.433636 62.006003 1.792433737 0.156581 144 100 SH9423 9423 RUF2 5' 23.478391 71.976723 47.727557 1.678769205 0.156466 89 78 SH5244 5244 snR30 snR30 71 87 26.355733 90.399593 58.377663 1.766246705 0.156462 55 39 SH21822 21822 copy of SH16002 310.854806 462.585407 386.7201065 2.587396753 0.156453 176 31 SH16127 16127 YDR064W_4_579453_580447_INTRON_22_560 intron 42.116875 160.349863 42.116875 119.232988 80.6749315 1.906738605 0.156417 97 56 SH17976 17976 YLR211C_12_564531_563792_INTRON_19_77 exon/intron 51.430047 181.667745 51.430047 131.237698 91.3338725 1.960631872 0.156378 131 85 SH8476 8476 snoRNA cluster 5 3' 27.153667 120.731378 27.153667 94.577711 60.865689 1.784372543 0.156348 122 71 SH4485 4485 U3b (snR17b) 5' - 3 3 25.75857 86.438993 56.0987815 1.748953428 0.156342 118 26 SH11242 11242 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3096 3109 453.782799 641.518722 547.6507605 2.738503695 0.156296 207 77 SH20293 20293 YDR500C spliced 289.178487 435.031803 362.105145 2.558834696 0.156296 119 88 SH13346 13346 MT COX1 COX1-ai5a 25.768091 111.277152 25.768091 86.509061 56.138576 1.749261392 0.156258 98 97 SH18765 18765 YNL246W_14_185459_186348_INTRON_33_127 5' exon 236.381966 603.417079 236.381966 368.035113 302.2085395 2.480306732 0.156257 119 97 SH17467 17467 YIL148W_9_68708_69528_INTRON_9_442 intron 25.446791 108.856302 25.446791 84.409511 54.928151 1.73979498 0.156233 25 3 SH10186 10186 RUF6 RUF6 776 795 27.504548 96.139552 61.82205 1.791143402 0.156156 30 49 SH4099 4099 SRP RNA SRP RNA 386 400 59.844789 142.021818 100.9333035 2.004034488 0.156124 143 70 SH16686 16686 YGL030W_7_439087_439634_INTRON_4_233 intron 29.546584 130.723126 29.546584 102.176542 65.861563 1.818632033 0.156091 41 19 SH5161 5161 snR13 5' 24.630467 79.059265 51.844866 1.714705756 0.156066 71 45 SH7245 7245 snR65 snR65 1 23 25.505505 84.807769 55.156637 1.741597779 0.156048 176 87 SH17286 17286 YHR141C_8_382752_381991_INTRON_5_445 intron 24.076948 98.633976 24.076948 75.557028 49.816988 1.697377466 0.156037 116 73 SH6031 6031 snR37 snR37 71 88 24.25029 76.618255 50.4342725 1.702725761 0.156029 170 58 SH18047 18047 YLR333C_12_796335_795573_INTRON_1_423 intron 26.444064 116.489019 26.444064 91.044955 58.7445095 1.768967282 0.155921 153 29 SH6685 6685 snR49 5' 25.270268 83.274232 54.27225 1.734577827 0.155898 38 16 SH9603 9603 RUF3 RUF3 401 417 127.354304 229.699417 178.5268605 2.251703568 0.155896 43 94 SH2155 2155 Met2 5' flank 30.559422 104.034672 67.297047 1.827996008 0.155894 199 29 SH4714 4714 snR4 snR4 106 120 26.437322 91.003898 58.72061 1.768790558 0.155874 55 42 SH10193 10193 RUF6 RUF6 811 828 27.80957 97.516373 62.6629715 1.797010985 0.155799 35 6 SH3190 3190 Ser5 71-82 + 3' flank 71 144.171268 251.132247 197.6517575 2.29590068 0.155793 3 27 SH6343 6343 snR43 5' 28.223758 99.358327 63.7910425 1.8047597 0.155764 30 88 SH1409 1409 Leu1 3' flank 25.502174 84.81413 55.158152 1.741609707 0.155725 208 78 SH11087 11087 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2321 2336 103.240875 198.429269 150.835072 2.178502335 0.15571 44 8 SH11992 11992 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6846 6863 26.959891 93.774641 60.367266 1.780801507 0.15568 143 76 SH19958 19958 YBL059C-A spliced 24.834914 80.424153 52.6295335 1.721229521 0.155655 34 103 SH13733 13733 MT COB Exon1 28.41327 127.510902 28.41327 100.097632 64.255451 1.807909976 0.155647 44 77 SH9387 9387 RUF1 RUF1 511 528 24.229603 76.520681 50.375142 1.702216283 0.155601 34 13 SH17500 17500 YJL041W_10_365480_368069_INTRON_2_119 3' exon 38.194974 151.329178 38.194974 114.134204 76.164589 1.881753103 0.155513 97 34 SH20401 20401 YFR024C-A spliced 28.090207 98.784529 63.437368 1.802345156 0.155505 114 98 SH11069 11069 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2231 2249 97.374721 190.75295 144.0638355 2.158554973 0.155498 63 69 SH20416 20416 YGL030W spliced 32.090087 106.36283 69.2264585 1.840272114 0.155487 204 41 SH3573 3573 Tyr2 3' flank 29.109767 101.404208 65.2569875 1.814627021 0.155469 15 17 SH3575 3575 Tyr2 3' flank 25.507956 84.875939 55.1919475 1.741875719 0.155448 182 83 SH16093 16093 YDR025W_4_491510_492319_INTRON_46_384 3' exon 30.092425 132.306033 30.092425 103.213608 66.6530165 1.823819809 0.155399 133 5 SH2995 2995 Ser2 5' flank 31.295206 105.32247 68.308838 1.834476898 0.155322 52 74 SH7957 7957 snoRNA cluster 2 5' 26.442618 116.53466 26.442618 91.092042 58.76733 1.76913596 0.155313 155 50 SH21204 21204 YOL127W spliced 30.865285 104.620152 67.7427185 1.830862621 0.155295 25 16 SH8164 8164 snoRNA cluster 3; snR70 61.087476 203.738951 61.087476 143.651475 102.3694755 2.010170478 0.155242 147 11 SH5748 5748 snR35 5' 26.992593 93.951627 60.47211 1.781555122 0.15523 103 21 SH2674 2674 Pro4 tRNA-exon/intron 36 52 27.147602 94.636359 60.8919805 1.7845601 0.155199 38 28 SH8742 8742 LSR1 / U2 RNA U2 351 368 25.508942 84.90481 55.206876 1.741993172 0.155191 131 44 SH11219 11219 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2981 3004 27.237796 95.041581 61.1396885 1.786323222 0.155096 154 5 SH12076 12076 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7266 7289 29.153361 101.507621 65.330491 1.815115922 0.155047 58 69 SH9003 9003 snR17a / U3a U3a 301 315 31.654735 105.816116 68.7354255 1.837180625 0.154984 94 47 SH15903 15903 YDL083C_4_307788_306925_INTRON_25_456 intron 460.870665 1110.63819 460.870665 650.767525 555.819095 2.744933463 0.154974 164 101 SH10842 10842 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1096 1119 58.148901 139.950633 99.049767 1.995853458 0.15497 152 99 SH18340 18340 YML124C_13_23684_22049_INTRON_26_323 intron 27.278392 121.509823 27.278392 95.231431 61.2549115 1.787140917 0.154952 77 2 SH10616 10616 RUF8 3' 165.999544 279.054719 222.5271315 2.34738297 0.154943 65 24 SH6194 6194 snR40 snR40 31 46 37.342282 113.110444 75.226363 1.876370065 0.154911 149 66 SH5066 5066 snR11 5' 24.803906 80.28433 52.544118 1.720524106 0.154907 123 54 SH7722 7722 snoRNA cluster1 snR77/intergenic 32.759296 139.024332 32.759296 107.265036 70.012166 1.845173514 0.154881 18 93 SH19704 19704 Negative Control 93.704019 186.029041 139.86653 2.1457138 0.154826 120 36 SH1215 1215 Ile1 tRNA 36 50 463.86262 654.503587 559.1831035 2.74755404 0.154811 130 100 SH694 694 Gln3 tRNA 1 17 800.991304 1056.652618 928.821961 2.967932475 0.154775 7 60 SH3490 3490 Tyr1 5' flank - tRNA7 7 28.66551 100.61759 64.64155 1.810511762 0.154738 45 74 SH17588 17588 YJL191W_10_73786_74610_INTRON_11_418 intron 26.161065 114.415011 26.161065 89.253946 57.7075055 1.761232302 0.154729 106 64 SH2537 2537 Pro2 5' flank 26.700821 92.708012 59.7044165 1.776006458 0.154705 38 67 SH19792 19792 Negative Control 29.920841 102.939911 66.430376 1.822366711 0.154674 136 79 SH4108 4108 SRP RNA SRP RNA 431 443 128.614874 231.482645 180.0487595 2.255390134 0.154659 123 72 SH10047 10047 RUF6 RUF6 81 100 27.554134 96.474965 62.0145495 1.792493593 0.154618 62 91 SH1863 1863 Leu9 tRNA-intron/exon 56 72 26.158897 89.250004 57.7044505 1.76120931 0.154614 27 40 SH17923 17923 YLR078C_12_286560_285737_INTRON_4_92 exon/intron 1641.95024 3646.960147 1641.95024 2006.009907 1823.980074 3.261020089 0.154604 209 82 SH21080 21080 YMR230W spliced 28.373467 100.078457 64.225962 1.807710618 0.154604 120 22 SH18916 18916 YOL120C_15_94401_93394_INTRON_113_559 3' exon 60.073663 201.499418 60.073663 142.425755 101.249709 2.005393784 0.154602 192 20 SH13648 13648 MT ATP6 ATP6 34.477491 142.949692 34.477491 109.472201 71.974846 1.857180744 0.154523 195 37 SH15844 15844 YDL075W_4_322225_322987_INTRON_58_478 intron 26.401569 116.29037 26.401569 90.888801 58.645185 1.768232361 0.154521 131 54 SH21435 21435 telomeric; WTP_217 744.88784 991.232017 868.0599285 2.938549709 0.154479 122 101 SH5346 5346 snR30 snR30 581 598 29.636376 102.429671 66.0330235 1.819761183 0.154469 20 58 SH4391 4391 telomerase RNA telomerase 991 1010 28.109022 98.950424 63.529723 1.802976962 0.154446 73 84 SH10131 10131 RUF6 RUF6 501 517 28.295575 99.785017 64.040296 1.806453331 0.154396 132 7 SH7101 7101 snR63 snR63 11 30 25.491481 84.862002 55.1767415 1.741756049 0.154374 182 39 SH19833 19833 Negative Control 30.282003 103.615584 66.9487935 1.825742755 0.154365 7 97 SH18088 18088 YLR344W_12_819312_820142_INTRON_20_466 3' exon 24.461999 101.574521 24.461999 78.112522 51.2872605 1.710009502 0.154339 184 16 SH9130 9130 snR7 U5 RNA 5' 27.705149 97.16658 62.4358645 1.795434129 0.154319 7 30 SH4519 4519 U3b (snR17b) U3b 151 168 39.067602 115.374768 77.221185 1.887736462 0.15431 156 39 SH8723 8723 LSR1 / U2 RNA U2 256 273 51.979503 132.097539 92.038521 1.963969631 0.154293 200 40 SH16241 16241 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 26.719475 118.539764 26.719475 92.820289 59.769882 1.776482398 0.154288 7 83 SH4480 4480 U3b (snR17b) 5' 24.712011 79.744239 52.228125 1.717904435 0.154197 137 55 SH11257 11257 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3171 3186 51.072802 130.921508 90.997155 1.959027814 0.154187 165 80 SH17549 17549 YJL177W_10_90783_91654_INTRON_310_626 3' exon 28.821528 128.763269 28.821528 100.941741 64.8816345 1.812121782 0.154115 117 71 SH10597 10597 RUF8 RUF8 911 923 38.118053 114.119056 76.1185545 1.881490532 0.154087 28 75 SH5149 5149 snR13 5' 25.369456 84.097005 54.7332305 1.738251082 0.154033 179 49 SH8920 8920 LSR1 / U2 RNA 3' 37.497203 113.355799 75.426501 1.877523961 0.15397 214 72 SH21028 21028 YMR116C spliced 56.11174 137.395643 96.7536915 1.985667544 0.153948 125 75 SH17051 17051 YGR214W_7_920570_921783_INTRON_91_545 intron 26.400378 116.338508 26.400378 90.93813 58.669254 1.768410566 0.153906 207 59 SH11759 11759 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5681 5694 44319.43155 36384.32716 40351.87936 4.605863766 0.1539 108 104 SH5319 5319 snR30 snR30 446 463 26.68713 92.707627 59.6973785 1.77595526 0.153884 145 78 SH20689 20689 YIL133C spliced 119.243983 219.537428 169.3907055 2.228889577 0.153848 48 61 SH7536 7536 snR79 snR79 21 38 26.521915 91.767164 59.1445395 1.771914655 0.153836 133 20 SH2014 2014 Lys3 tRNA 16 30 38.243036 114.297867 76.2704515 1.882356317 0.153794 168 15 SH19602 19602 AEP2/ATP13 2.1 40.062002 116.724251 78.3931265 1.894277985 0.153767 51 68 SH5296 5296 snR30 snR30 331 343 26.518305 91.754906 59.1366055 1.771856392 0.153706 176 100 SH6889 6889 snR56 76-88 + 3' 76 24.25003 76.807266 50.528648 1.703537678 0.153653 56 22 SH8811 8811 LSR1 / U2 RNA U2 696 710 2009.106684 2401.236096 2205.17139 3.343442349 0.153643 88 64 SH4839 4839 snR8 5' 24.884955 80.922306 52.9036305 1.723485476 0.153636 104 18 SH18846 18846 YNL312W_14_48286_49215_INTRON_8_115 intron 23.436692 94.377461 23.436692 71.940769 47.6887305 1.678415761 0.153594 13 104 SH607 607 Gln1 3' flank 25.456297 84.705663 55.08098 1.741001659 0.153532 88 12 SH10826 10826 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1016 1034 221.07204 349.325137 285.1985885 2.455147372 0.153519 54 98 SH8607 8607 snR19 / U1 RNA U1 531 548 26.185814 89.53333 57.859572 1.762375217 0.153489 87 32 SH15226 15226 MT COX3 cox3 26.57475 117.73731 26.57475 92.16256 59.368655 1.77355721 0.153448 156 23 SH6686 6686 snR49 5' 24.573825 78.909388 51.7416065 1.713839909 0.153437 112 61 SH21506 21506 copy of SH2798 32.08126 106.456976 69.269118 1.840539658 0.153432 61 83 SH14239 14239 MT tRNA Ser 5' 25.759721 111.467936 25.759721 86.708215 56.233968 1.749998729 0.153396 211 25 SH4854 4854 snR8 snR8 51 65 2349.068993 2756.667532 2552.868263 3.407028404 0.153377 62 96 SH902 902 Glu3 tRNA 21 37 360.47357 526.495573 443.4845715 2.646878516 0.153356 13 65 SH4532 4532 U3b (snR17b) U3b 216 231 40.914701 117.86691 79.3908055 1.899770208 0.153317 5 30 SH20644 20644 YHR203C spliced 1826.726961 2207.66116 2017.194061 3.304747681 0.153293 43 29 SH9454 9454 RUF2 RUF2 111 128 24.508902 78.501971 51.5054365 1.711853072 0.153281 101 35 SH10387 10387 RUF7 3' 31.603715 105.842324 68.7230195 1.837102233 0.153154 133 58 SH6616 6616 snR48 5' 25.630608 85.879937 55.7552725 1.746285943 0.153151 199 75 SH11013 11013 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1951 1966 8221.664108 8273.585472 8247.62479 3.916328895 0.153128 159 52 SH3954 3954 RNase MRP RNaseMRP 186 200 27.437522 96.071571 61.7545465 1.790668937 0.153127 126 42 SH16292 16292 YDR450W_4_1359912_1360787_INTRON_48_482 intron 26.476711 117.005235 26.476711 91.528524 59.0026175 1.770871278 0.153115 64 85 SH8268 8268 snoRNA cluster4 snR67 89.194957 268.490898 89.194957 180.295941 134.745449 2.129514106 0.153114 208 23 SH9741 9741 RUF4 RUF4 481 500 24.000575 75.325378 49.6629765 1.696032745 0.153062 131 20 SH3942 3942 RNase MRP RNaseMRP 126 150 25.730196 86.553016 56.141606 1.749284832 0.152951 44 101 SH8666 8666 LSR1 / U2 RNA 5' 24.170229 76.358169 50.264199 1.701258766 0.152908 205 34 SH16738 16738 YGL076C_7_365994_364333_INTRON_565_1032 intron 26.528063 117.44301 26.528063 91.914947 59.221505 1.77247944 0.152711 175 77 SH12281 12281 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 49.964664 178.592391 49.964664 129.627727 89.7961955 1.953257937 0.152586 94 34 SH2405 2405 Phe4 76-91 + 3' flank 76 53.140302 133.720223 93.4302625 1.970487569 0.152561 158 35 SH1921 1921 Lys1 61-72 + 3' flank 61 73 30.743857 104.555803 67.64983 1.83026671 0.152506 91 54 SH18585 18585 YNL050C_14_534978_534075_INTRON_18_108 exon/intron 26.04041 113.694182 26.04041 88.653772 57.347091 1.758511393 0.152473 170 7 SH6627 6627 snR48 5' 24.767788 80.255962 52.511875 1.720257526 0.152433 210 17 SH9183 9183 snR7 U5 RNA U5 186 202 25.728312 86.596341 56.1623265 1.74944509 0.152323 190 88 SH8244 8244 snoRNA cluster4 5' 24.719336 103.677385 24.719336 79.958049 52.3386925 1.718822869 0.15221 87 22 SH11554 11554 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4656 4671 42.112801 119.483797 80.798299 1.907402218 0.152161 79 71 SH6033 6033 snR37 snR37 81 98 27.75368 97.551306 62.652493 1.796938357 0.152101 111 3 SH19587 19587 AEP2/ATP13 2.1 30.081547 103.379485 66.730516 1.824324483 0.152011 61 94 SH13393 13393 MT COX1 intronic 1504.276691 3361.456939 1504.276691 1858.180248 1681.22847 3.225626736 0.151957 205 104 SH17781 17781 YKL180W_11_109271_110131_INTRON_310_615 intron 25.906393 112.716953 25.906393 87.81056 56.8584765 1.754795219 0.15193 76 25 SH11445 11445 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4111 4127 213.745197 340.395778 277.0704875 2.442590269 0.151896 30 67 SH7360 7360 snR68 snR68 21 38 27.391032 95.962109 61.6765705 1.790120217 0.151848 156 84 SH625 625 Gln2 5' flank 25.474545 84.972159 55.223352 1.742122764 0.15184 139 75 SH8203 8203 snoRNA cluster 3; intergenic 28.365811 127.577566 28.365811 100.211755 64.288783 1.808135205 0.151827 131 86 SH11726 11726 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5516 5529 30.904072 104.883201 67.8936365 1.831829071 0.151822 22 39 SH7671 7671 snoRNA cluster1 snR78 27.63935 123.707038 27.63935 97.067688 62.353519 1.794860968 0.151786 15 70 SH5971 5971 snR36 snR36 311 328 27.13459 94.836274 60.985432 1.785226105 0.151737 170 104 SH8835 8835 LSR1 / U2 RNA U2 816 828 27.626151 97.016557 62.321354 1.79463688 0.151688 30 68 SH10880 10880 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1286 1301 565.376907 779.433231 672.405069 2.827630979 0.151613 188 84 SH203 203 Arg2 3' flank 28.70917 100.866393 64.7877815 1.811493109 0.15161 63 34 SH11212 11212 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2946 2961 325.322157 482.481858 403.9020075 2.606276012 0.151581 194 53 SH3434 3434 Trp1 tRNA 1 13 154.767827 265.291972 210.0298995 2.322281125 0.151577 27 23 SH21269 21269 YPL081W spliced 33.645469 108.575571 71.11052 1.851933854 0.151573 141 69 SH3556 3556 Tyr2 tRNA-intron/exon 51 67 191.352963 312.008094 251.6805285 2.400849617 0.151556 135 23 SH17462 17462 YIL148W_9_68708_69528_INTRON_9_442 intron 32.702126 139.069993 32.702126 107.367867 70.0349965 1.845315111 0.151472 2 35 SH11097 11097 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2371 2386 58.627164 140.825952 99.726558 1.99881083 0.15144 112 98 SH8270 8270 snoRNA cluster4 snR67 30.739442 134.347077 30.739442 104.607635 67.6735385 1.830418885 0.151429 138 47 SH9093 9093 snR14 / U4 RNA U4 81 93 34.255645 109.357024 71.8063345 1.856162758 0.151426 92 96 SH8132 8132 snoRNA cluster 3; snR41 25.855924 112.377021 25.855924 87.521097 56.6885105 1.753495046 0.151423 131 9 SH19486 19486 YPT1 2368.907435 2780.709709 2574.808572 3.410744946 0.151407 119 45 SH14634 14634 MT 21S rRNA Sce1 endonuc 25.370773 108.713204 25.370773 84.342431 54.856602 1.739228902 0.151291 31 43 SH17481 17481 YJL001W_10_434855_435618_INTRON_66_181 3' exon 28.592681 128.262128 28.592681 100.669447 64.631064 1.810441306 0.15122 51 10 SH2238 2238 Phe1 tRNA 66 80 31.229835 105.445039 68.337437 1.834658687 0.151208 115 29 SH6759 6759 snR50 5' 45.524834 123.984881 84.7548575 1.928164598 0.151199 24 98 SH5505 5505 snR32 186-188 + 3' 186 24.45869 78.349604 51.404147 1.710998157 0.151181 32 36 SH10919 10919 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1481 1501 246.850117 382.521006 314.6855615 2.497876817 0.151178 130 15 SH21658 21658 copy of SH8993 27.709376 97.431203 62.5702895 1.796368164 0.151098 44 39 SH8703 8703 LSR1 / U2 RNA U2 156 171 25.05735 82.287263 53.6723065 1.729750259 0.150968 107 84 SH6424 6424 snR45 5' 32.702605 107.395781 70.049193 1.845403136 0.150946 91 85 SH18503 18503 YMR194W_13_651144_651909_INTRON_17_479 intron 26.187495 114.975064 26.187495 89.787569 57.987532 1.763334625 0.150848 192 90 SH19898 19898 snR17A spliced 30.597163 104.384264 67.4907135 1.829244019 0.15081 208 99 SH14726 14726 MT tRNA cys; tRNA his intergenic 28.108961 126.346071 28.108961 99.23711 63.6730355 1.803955555 0.150755 140 3 SH7941 7941 snoRNA cluster1 3' 25.146856 107.053196 25.146856 82.90634 54.026598 1.732607621 0.150684 99 71 SH18036 18036 YLR333C_12_796335_795573_INTRON_1_423 5' exon 24.511633 102.245833 24.511633 78.7342 51.6229165 1.712842537 0.150672 153 2 SH4212 4212 telomerase RNA telomerase 96 113 24.727968 80.143844 52.435906 1.719628776 0.150665 82 84 SH6111 6111 snR37 3' 31.459364 105.778834 68.619099 1.836445011 0.150655 122 90 SH4016 4016 SRP RNA 5' 26.1253 89.400953 57.7631265 1.761650692 0.150511 37 3 SH5477 5477 snR32 snR32 46 63 33.058882 107.87947 70.469176 1.847999193 0.150505 183 9 SH166 166 Arg2 5' flank 23.873951 74.760911 49.317431 1.693000446 0.150497 33 75 SH5210 5210 snR30 5' 25.614809 86.010282 55.8125455 1.74673183 0.150495 66 40 SH996 996 Gly2 5' flank 33.506159 108.45815 70.9821545 1.851149177 0.150421 158 39 SH6778 6778 snR50 snR50 66 80 34.862039 110.195296 72.5286675 1.860509699 0.150387 157 30 SH19045 19045 YOR234C_15_779404_778554_INTRON_20_546 intron 25.069884 106.492825 25.069884 82.422941 53.7464125 1.730349481 0.150359 59 42 SH3073 3073 Ser3 tRNA 61 73 29.008506 101.491954 65.25023 1.814582047 0.15035 116 92 SH6918 6918 snR58 5' 25.55507 85.634105 55.5945875 1.745032512 0.150306 163 60 SH15728 15728 YBR230C_2_680008_679507_INTRON_12_108 5' exon 92.854953 277.261147 92.854953 185.406194 139.1305735 2.143422575 0.150283 170 94 SH17088 17088 YHL001W_8_104270_105084_INTRON_130_527 intron 27.295352 121.951605 27.295352 95.656253 61.4758025 1.788704207 0.15028 76 55 SH4800 4800 snR5 snR5 171 187 31.635324 106.031439 68.8333815 1.837799105 0.150279 86 92 SH16891 16891 YGL189C_7_148970_148233_INTRON_1_368 3' exon 41.480559 159.264829 41.480559 118.78427 80.1324145 1.903808229 0.150241 116 41 SH9835 9835 RUF5-1 5' 25.787456 87.172971 56.4802135 1.75189633 0.150241 10 3 SH20727 20727 YJL177W spliced 58.067846 140.199029 99.1334375 1.996220166 0.150233 54 3 SH17990 17990 YLR275W_12_694378_694800_INTRON_6_95 3' exon 27.896902 125.230586 27.896902 98.333684 63.115293 1.800134603 0.150212 96 18 SH3392 3392 Thr4 tRNA 46 62 26.988223 94.304995 60.646609 1.782806523 0.150184 194 101 SH2678 2678 Pro4 tRNA-intron/exon 56 70 54.310223 135.391179 94.850701 1.977040545 0.150127 79 62 SH6531 6531 snR46 snR46 146 163 25.620756 86.084344 55.85255 1.747043006 0.150099 51 88 SH11471 11471 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4241 4256 24437.24321 21602.34754 23019.79537 4.362101459 0.150093 100 42 SH6368 6368 snR43 snR43 81 95 28.02714 98.927888 63.477514 1.80261991 0.150036 23 8 SH1363 1363 Ile3 3' flank 25.524095 85.455369 55.489732 1.744212627 0.150025 138 63 SH3972 3972 RNase MRP RNaseMRP 276 288 34.241161 109.413598 71.8273795 1.856290022 0.150011 130 49 SH3124 3124 Ser4 tRNA 26 41 38.783216 115.24797 77.015593 1.886578664 0.149936 52 86 SH8753 8753 LSR1 / U2 RNA U2 406 418 32.066048 106.619149 69.3425985 1.841000112 0.149896 38 58 SH768 768 Gln4 3' flank 33.662922 108.687369 71.1751455 1.852328364 0.149868 93 5 SH7410 7410 snR69 5' 26.325671 90.814419 58.570045 1.767675558 0.149819 168 57 SH162 162 Arg2 5' flank 443.687253 631.75205 537.7196515 2.730555908 0.149818 21 39 SH8579 8579 snR19 / U1 RNA U1 391 407 351.683762 516.569033 434.1263975 2.637616194 0.149803 89 15 SH6034 6034 snR37 snR37 86 102 79.664893 168.167927 123.91641 2.093128823 0.149795 138 21 SH17375 17375 YIL052C_9_257061_256224_INTRON_38_509 intron 35.258194 145.002048 35.258194 110.743854 73.001024 1.863328952 0.149756 94 58 SH11012 11012 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1946 1964 69.499573 154.94883 112.2242015 2.050086524 0.149661 183 55 SH21819 21819 copy of SH15999 154.772763 265.611939 210.192351 2.322616908 0.149616 205 87 SH7463 7463 snR71 5' 32.880038 107.694902 70.28747 1.846877911 0.149615 161 103 SH19830 19830 Negative Control 31.817515 106.307723 69.062619 1.839243044 0.149589 125 68 SH7345 7345 snR68 5' 24.695445 80.034188 52.3648165 1.719039586 0.149434 7 43 SH1280 1280 Ile2 tRNA-intron/exon 96 108 34.715412 110.056904 72.386158 1.859655526 0.149405 183 27 SH17145 17145 YHR010W_8_126513_127484_INTRON_32_592 3' exon 30.091924 132.636374 30.091924 103.54445 66.818187 1.824894688 0.149353 192 103 SH3602 3602 Val1 tRNA 6 18 34.96777 110.389547 72.6786585 1.861406903 0.149338 85 97 SH21012 21012 YML124C spliced 34.57537 109.877738 72.226554 1.858696895 0.14933 10 16 SH8628 8628 snR19 / U1 RNA U1 636 652 51.223292 131.453529 91.3384105 1.96065345 0.149308 163 41 SH706 706 Gln3 61-72 + 3' flank 61 3' flank 63.28596 146.954836 105.120398 2.021686997 0.149284 102 91 SH11041 11041 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2091 2106 17591.79069 16186.19319 16888.99194 4.227603728 0.149265 144 102 SH12205 12205 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7911 7928 89.835396 181.54853 135.691963 2.132554125 0.149208 212 28 SH8330 8330 snoRNA cluster4 intergenic/snR53 24.736006 104.055038 24.736006 80.319032 52.527519 1.720386889 0.149205 115 48 SH17444 17444 YIL133C_9_99416_98527_INTRON_32_321 3' exon 26.007146 113.738049 26.007146 88.730903 57.3690245 1.758677465 0.149183 166 81 SH7715 7715 snoRNA cluster1 snR77 41.230471 158.755191 41.230471 118.52472 79.8775955 1.902424983 0.149159 108 59 SH450 450 Asp1 71 + 3' flank 71 3' flank 27.152239 95.108724 61.1304815 1.786257817 0.149128 109 80 SH5534 5534 snR33 5' 25.571379 85.847185 55.709282 1.745927561 0.149102 196 23 SH20547 20547 YGR225W spliced 58.734164 141.13808 99.936122 1.999722493 0.149099 167 2 SH7079 7079 snR63 5' 33.070967 107.968641 70.519804 1.848311097 0.149095 206 101 SH12631 12631 MT_15S MT_15S 27.923445 125.464605 27.923445 98.54116 63.2323025 1.800938996 0.149058 29 38 SH13023 13023 MT COX1 COX1ai2 33.361852 140.708706 33.361852 108.346854 70.854353 1.850366537 0.149018 126 74 SH8310 8310 snoRNA cluster4 intergenic 28.274884 127.390469 28.274884 100.115585 64.1952345 1.80750279 0.149003 136 24 SH18107 18107 YLR367W_12_855877_857316_INTRON_698_1180 intron 26.756702 119.136112 26.756702 93.37941 60.068056 1.778643577 0.148876 5 27 SH7740 7740 snoRNA cluster1 intergenic 23.939394 98.219623 23.939394 75.280229 49.6098115 1.695567577 0.148822 119 99 SH11503 11503 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4401 4417 19043.99726 17361.49036 18202.74381 4.260136857 0.148779 54 101 SH3737 3737 Val4 5' flank 29.167961 101.874676 65.5213185 1.816382628 0.148749 188 14 SH10568 10568 RUF8 RUF8 766 784 26.00288 88.744681 57.3737805 1.758713468 0.148719 51 60 SH1622 1622 Leu5 5' flank 25.672267 86.55013 56.1111985 1.749049545 0.148677 10 7 SH4293 4293 telomerase RNA telomerase 501 519 26.965984 94.321687 60.6438355 1.782786661 0.148631 204 21 SH4602 4602 snR3 5' 34.203085 109.439459 71.821272 1.856253092 0.148613 67 60 SH6560 6560 snR47 5' 25.445285 85.062865 55.254075 1.742364313 0.148604 66 59 SH16169 16169 YDR139C_4_733917_733611_INTRON_150_222 intron 31.208261 135.759126 31.208261 105.550865 68.379563 1.834926321 0.148569 49 91 SH319 319 Arg5 5' flank 27.96176 98.751184 63.356472 1.801790986 0.148553 119 76 SH12483 12483 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 24.072937 99.17978 24.072937 76.106843 50.08989 1.699750078 0.148535 77 99 SH6044 6044 snR37 snR37 136 155 31.449011 105.873596 68.6613035 1.836712044 0.148534 56 62 SH15060 15060 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.787475 112.115913 25.787475 87.328438 56.5579565 1.75249371 0.148506 43 4 SH7220 7220 snR64 3' 27.4583 96.519575 61.9889375 1.792314193 0.148417 106 99 SH808 808 Glu1 tRNA 56 68 27.950609 98.718634 63.3346215 1.801641179 0.148331 13 62 SH6532 6532 snR46 snR46 151 167 24.376331 78.05227 51.2143005 1.709391245 0.148307 188 104 SH7314 7314 snR66 snR66 61 80 27.789067 98.004701 62.896884 1.79862913 0.148244 86 91 SH7646 7646 snoRNA cluster1 5' 23.896644 97.966339 23.896644 75.069695 49.4831695 1.694457509 0.148212 204 48 SH7416 7416 snR69 5' - 2 -19 2 24.361056 77.96453 51.162793 1.708954245 0.148173 203 91 SH13172 13172 MT COX1 intronic/exon4 29.169618 130.078564 29.169618 101.908946 65.539282 1.816501679 0.148172 116 29 SH7630 7630 snR189 3' 24.50622 78.910547 51.7083835 1.713560961 0.148108 203 101 SH18269 18269 YML056C_13_164176_162194_INTRON_461_868 intron 25.605393 110.767847 25.605393 86.162454 55.8839235 1.747286889 0.148069 21 73 SH11721 11721 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5491 5504 341.343948 504.002811 422.6733795 2.626004896 0.148046 32 99 SH21371 21371 Leu1_5 spliced 109.299693 207.310577 158.305135 2.199495002 0.148043 43 53 SH8406 8406 snoRNA cluster 5 snR190 26.904422 119.998518 26.904422 94.094096 60.499259 1.781750055 0.148028 196 33 SH18645 18645 YNL112W_14_413636_416278_INTRON_1274_2275 intron 24.297676 100.865663 24.297676 77.567987 50.9328315 1.706997821 0.14802 42 45 SH14373 14373 MT ORF9 and ORF10 (hypothetical) ORF10 26.623215 118.476681 26.623215 92.853466 59.7383405 1.776253154 0.148018 125 85 SH1744 1744 Leu7 tRNA 16 28 815.93731 1078.829656 947.383483 2.976525809 0.147983 195 32 SH11267 11267 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3221 3239 28.757632 101.15146 64.954546 1.812609552 0.147982 181 28 SH9657 9657 RUF4 RUF4 61 73 49.212318 128.973216 89.092767 1.949842447 0.14798 3 104 SH5371 5371 snR31 5' 26.549202 92.507478 59.52834 1.774723772 0.147969 159 34 SH10191 10191 RUF6 RUF6 801 817 57.568949 139.726733 98.647841 1.994087585 0.147937 189 65 SH8765 8765 LSR1 / U2 RNA U2 466 483 113.364084 212.639997 163.0020405 2.212193041 0.147866 14 92 SH608 608 Gln1 3' flank 25.137444 83.089021 54.1132325 1.733303478 0.147858 127 33 SH4951 4951 snR9 snR9 161 178 26.952003 94.319231 60.635617 1.782727801 0.147828 30 21 SH6810 6810 snR52 5' 39.410814 116.212605 77.8117095 1.891044957 0.147783 5 11 SH7250 7250 snR65 snR65 26 45 24.734331 80.428663 52.581497 1.720832946 0.14777 4 92 SH11162 11162 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2696 2719 26.445755 91.822198 59.1339765 1.771837084 0.147757 88 57 SH7122 7122 snR63 snR63 116 135 24.322165 77.748072 51.0351185 1.707869128 0.147747 204 81 SH11500 11500 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4386 4401 32.312318 107.056433 69.6843755 1.843135412 0.147682 72 100 SH7529 7529 snR79 5' - 6 -14 6 23.837487 74.755875 49.296681 1.69281768 0.147669 164 38 SH2754 2754 Pro5 3' flank 28.403724 100.504481 64.4541025 1.809250565 0.147669 202 14 SH16979 16979 YGR034W_7_555923_556666_INTRON_20_496 intron 25.815512 112.409944 25.815512 87.594432 56.704972 1.75362114 0.147618 91 14 SH6526 6526 snR46 snR46 121 137 73.888682 160.793971 117.3413265 2.069450993 0.147603 184 83 SH4888 4888 snR8 3' 24.2494 77.292117 50.7707585 1.705613652 0.147588 156 6 SH7341 7341 snR68 5' 24.965608 81.971508 53.468558 1.728098472 0.147566 174 84 SH21452 21452 copy of SH378 24.07421 76.190445 50.1323275 1.700117868 0.147547 110 18 SH14749 14749 MT ORF11; tRNA Leu; tRNA Gln ORF11 105.478355 306.803043 105.478355 202.324688 153.9015215 2.187242913 0.14754 8 102 SH12306 12306 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.818153 119.572534 26.818153 93.754381 60.286267 1.780218393 0.147464 17 54 SH4349 4349 telomerase RNA telomerase 781 798 28.668218 101.017517 64.8428675 1.811862212 0.14736 198 96 SH10910 10910 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1436 1451 27883.88891 24305.13205 26094.51048 4.416549154 0.147357 162 87 SH15438 15438 YBL072C_2_89435_88518_INTRON_1_308 intron 24.743532 104.271744 24.743532 80.528212 52.635872 1.721281822 0.147306 59 39 SH2648 2648 Pro4 5' flank 26.957011 94.38449 60.6707505 1.782979367 0.147246 149 35 SH16230 16230 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 27.69988 124.384808 27.69988 97.684928 62.692404 1.797214924 0.147231 44 35 SH20242 20242 YDR367W spliced 33.712896 108.890352 71.301624 1.853099422 0.147221 19 86 SH18309 18309 YML073C_13_124172_123227_INTRON_16_430 intron 30.293355 133.327336 30.293355 104.033981 67.163668 1.827134406 0.147149 94 30 SH17306 17306 YHR203C_8_505526_504472_INTRON_15_283 intron 35.0648 144.699036 35.0648 110.634236 72.849518 1.862426683 0.147147 84 50 SH17865 17865 YLL050C_12_40413_39803_INTRON_15_193 intron 25.588647 110.723198 25.588647 86.134551 55.861599 1.747113363 0.147135 120 40 SH7219 7219 snR64 3' 25.716276 86.978681 56.3474785 1.750874487 0.147135 186 78 SH5214 5214 snR30 5' 25.843852 87.826474 56.835163 1.75461711 0.147135 57 97 SH15577 15577 YBR084C-A_2_415219_414144_INTRON_3_508 intron 27.91108 125.54759 27.91108 98.63651 63.273795 1.801223883 0.147111 134 45 SH20675 20675 YIL106W spliced 25.680187 86.742788 56.2114875 1.749825078 0.147099 23 59 SH3404 3404 Thr4 3' flank 26.092637 89.49627 57.7944535 1.761886161 0.147082 44 88 SH14564 14564 MT 21S rRNA 21S rRNA3 31.17731 135.763272 31.17731 105.585962 68.381636 1.834939487 0.147071 19 95 SH19152 19152 YPL075W_16_412249_415357_INTRON_9_759 intron 1094.365831 2494.904227 1094.365831 1401.538396 1247.952114 3.096197921 0.147069 62 10 SH18676 18676 YNL112W_14_413636_416278_INTRON_1274_2275 intron 29.240184 130.340229 29.240184 102.100045 65.6701145 1.817367774 0.147062 104 20 SH13621 13621 MT ATP6 ATP6 27.123641 121.265035 27.123641 95.141394 61.1325175 1.786272281 0.146993 110 80 SH234 234 Arg3 26-40 26 40 30.968997 105.272567 68.120782 1.833279625 0.146943 120 72 SH6487 6487 snR46 5' 25.647735 86.542396 56.0950655 1.748924659 0.146937 43 63 SH9488 9488 RUF2 3' 118.525537 219.509899 169.017718 2.227932234 0.146874 210 44 SH7703 7703 snoRNA cluster1 intergenic/snR77 24.511366 102.558488 24.511366 79.047122 51.779244 1.714155705 0.14686 145 4 SH766 766 Gln4 3' flank 25.194069 83.555913 54.374991 1.735399198 0.146843 180 44 SH20685 20685 YIL111W spliced 25.364355 84.687937 55.026146 1.740569096 0.146823 45 82 SH20276 20276 YDR447C spliced 37.786025 114.115616 75.9508205 1.88053247 0.146781 47 64 SH11428 11428 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4026 4039 34702.72596 29477.07862 32089.90229 4.506368395 0.146713 16 10 SH20476 20476 YGL189C spliced 30.027266 103.5726 66.799933 1.824776027 0.146687 85 34 SH12651 12651 MT_15S MT_15S 26.26302 115.947183 26.26302 90.684163 58.4735915 1.766959769 0.146665 180 5 SH8231 8231 snoRNA cluster 3; 3' 28.213107 127.240126 28.213107 100.027019 64.120063 1.80699394 0.146607 52 84 SH10776 10776 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 766 783 26.649825 93.079266 59.8645455 1.77716969 0.146532 141 10 SH4568 4568 U3b (snR17b) U3b 396 412 26.362017 91.370714 58.8663655 1.769867223 0.146502 151 46 SH3141 3141 Ser4 3' flank 24.861738 81.378414 53.120076 1.725258688 0.146463 134 94 SH18159 18159 YLR426W_12_987057_988108_INTRON_81_151 intron/exon 26.01656 114.068871 26.01656 89.052311 57.5344355 1.759927856 0.146351 151 87 SH17965 17965 YLR185W_12_522665_523290_INTRON_8_366 intron 256.32762 651.097282 256.32762 395.769662 326.048641 2.513282394 0.146303 7 41 SH8137 8137 snoRNA cluster 3; snR41/intergenic 28.094079 126.622035 28.094079 99.527956 63.8110175 1.80489567 0.146172 184 66 SH17031 17031 YGR183C_7_859471_859058_INTRON_4_216 intron 98.368657 290.483094 98.368657 193.114437 145.741547 2.163583375 0.146148 76 56 SH1032 1032 Gly2 3' flank 29.63384 102.879442 66.256641 1.821229415 0.146129 147 63 SH8096 8096 snoRNA cluster 2 3' 29.112822 130.02889 29.112822 101.916068 65.514445 1.816337066 0.146089 7 55 SH9137 9137 snR7 U5 RNA 5' 25.371142 84.801425 55.0862835 1.741043473 0.146029 90 54 SH2235 2235 Phe1 tRNA-intron/exon 51 67 170.595162 286.428178 228.51167 2.358908384 0.145978 138 12 SH806 806 Glu1 tRNA 46 58 53.293723 134.382633 93.838178 1.972379567 0.145945 63 35 SH11148 11148 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2626 2643 37644.72287 31682.94332 34663.8331 4.539876585 0.145845 21 50 SH18298 18298 YML073C_13_124172_123227_INTRON_16_430 intron 33.378447 140.913861 33.378447 108.535414 70.9569305 1.85099482 0.145828 149 83 SH18411 18411 YMR125W_13_517538_520445_INTRON_26_347 intron/exon 25.465453 109.907684 25.465453 85.442231 55.453842 1.743931641 0.14578 107 34 SH20118 20118 YDL075W spliced 27.181934 95.492962 61.337448 1.787725703 0.14575 174 85 SH8626 8626 snR19 / U1 RNA U1 626 640 1685.456203 2065.397698 1875.426951 3.273100153 0.145693 151 31 SH6386 6386 snR43 snR43 171 188 28.672459 101.115097 64.893778 1.812203059 0.145689 93 33 SH1816 1816 Leu8 3' flank 22.533907 67.329575 44.931741 1.652553247 0.145592 213 72 SH20172 20172 YDL137W spliced 30.444721 104.398161 67.421441 1.82879803 0.145557 184 55 SH3277 3277 Thr2 5' flank - tRNA4 4 41.481943 119.070608 80.2762755 1.904587215 0.145486 204 29 SH18835 18835 YNL302C_14_62942_61957_INTRON_21_571 intron 28.297056 127.720301 28.297056 100.423245 64.3601505 1.808617051 0.145425 85 102 SH7526 7526 snR79 5' 24.991933 82.335477 53.663705 1.729680654 0.145365 187 15 SH19337 19337 YPL241C_16_96258_95372_INTRON_26_105 intron 25.860847 112.962663 25.860847 88.101816 56.9813315 1.755732593 0.14534 121 57 SH213 213 Arg3 5' flank 27.133817 95.313572 61.2236945 1.786919533 0.145292 56 45 SH13613 13613 MT ATP6 5' 23.747306 97.143324 23.747306 74.396018 49.071662 1.690830767 0.145272 6 34 SH5824 5824 snR35 snR35 306 323 24.735231 80.647283 52.691257 1.721738559 0.145246 131 80 SH10143 10143 RUF6 RUF6 561 578 229.6142 361.997193 295.8056965 2.471006533 0.145218 162 92 SH11941 11941 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6591 6608 38.863762 115.630888 77.247325 1.887883449 0.145206 20 98 SH13603 13603 MT ATP8/AAP1 ATP8 24.118832 99.765108 24.118832 76.646276 50.382554 1.702280179 0.145192 104 3 SH20792 20792 YKL156W spliced 26.873483 94.166962 60.5202225 1.781900516 0.145188 59 3 SH12410 12410 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.547389 110.587042 25.547389 86.039653 55.793521 1.74658377 0.145126 38 61 SH8175 8175 snoRNA cluster 3; snR70 42.605015 162.175404 42.605015 120.570389 81.587702 1.911624701 0.145066 212 78 SH6989 6989 snR60 snR60 26 44 27.94036 98.928404 63.434382 1.802324713 0.145034 105 93 SH2303 2303 Phe2 3' flank 28.391301 100.622336 64.5068185 1.809605623 0.145023 213 103 SH2854 2854 Pro7 tRNA 76 88 65.501293 150.15657 107.8289315 2.032735302 0.145022 20 2 SH9573 9573 RUF3 RUF3 251 267 29.770269 103.192959 66.481614 1.822701554 0.144996 178 14 SH6332 6332 snR43 5' 41.835419 119.558886 80.6971525 1.90685821 0.144971 95 17 SH4073 4073 SRP RNA SRP RNA 256 270 427.876825 614.08737 520.9820975 2.7168228 0.144968 162 68 SH6626 6626 snR48 5' 24.299152 77.829114 51.064133 1.708115963 0.144925 14 2 SH4213 4213 telomerase RNA telomerase 101 119 24.908402 81.819995 53.3641985 1.727249991 0.144908 137 47 SH1591 1591 Leu4 3' flank 40.25897 117.506483 78.8827265 1.896981913 0.144896 172 82 SH6009 6009 snR37 5' 24.263152 77.598986 50.931069 1.706982792 0.144895 12 101 SH8193 8193 snoRNA cluster 3; intergenic 27.948053 125.922751 27.948053 98.974698 63.4613755 1.802509481 0.144882 164 69 SH4141 4141 SRP RNA SRP RNA 596 610 34.398315 109.885902 72.1421085 1.858188831 0.144855 87 53 SH10226 10226 RUF6 RUF6 976 993 23.970351 75.771502 49.8709265 1.697847437 0.144822 200 89 SH18064 18064 YLR344W_12_819312_820142_INTRON_20_466 exon/intron 28.340263 127.87716 28.340263 100.536897 64.43858 1.809145962 0.144822 117 15 SH20561 20561 YHR001W-A spliced 26.676673 93.323076 59.9998745 1.778150342 0.14482 104 74 SH2009 2009 Lys3 5' flank - tRNA7 7 31.642795 106.321634 68.9822145 1.838737132 0.144819 122 78 SH15047 15047 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.458387 102.335433 24.458387 78.877046 51.6677165 1.713219268 0.144744 194 22 SH16582 16582 YFL034C-A_6_64931_64242_INTRON_13_333 5' exon 30.239281 133.309572 30.239281 104.070291 67.154786 1.827076969 0.144702 208 100 SH16506 16506 YER117W_5_396765_397649_INTRON_43_513 intron 28.067329 126.595102 28.067329 99.527773 63.797551 1.804804008 0.144639 119 23 SH10813 10813 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 951 972 209.090745 336.02053 272.5556375 2.435455169 0.144623 42 76 SH6968 6968 snR60 5' 211.553069 339.155322 275.3541955 2.439891698 0.144618 25 78 SH8318 8318 snoRNA cluster4 intergenic 29.207222 130.379298 29.207222 102.172076 65.689649 1.817496941 0.144604 128 100 SH903 903 Glu3 tRNA 26 40 186.946541 307.68639 247.3164655 2.393253031 0.144602 68 72 SH7874 7874 snoRNA cluster1 snR73 23.85368 97.940797 23.85368 75.087117 49.4703985 1.694345409 0.144573 51 92 SH19225 19225 YPL090C_16_378390_377286_INTRON_7_400 intron 46.043708 170.112449 46.043708 125.068741 85.5562245 1.932251611 0.144527 113 65 SH6315 6315 snR42 3' 25.73602 87.346117 56.5410685 1.752364011 0.144492 31 11 SH2532 2532 Pro1 3' flank 28.305104 100.494098 64.399601 1.808883177 0.144381 72 96 SH12930 12930 MT COX1 COX1ai2 26.185155 115.558477 26.185155 90.373322 58.2792385 1.765513868 0.144339 153 36 SH15317 15317 YAL003W_1_142172_143158_INTRON_81_446 intron 25.210545 108.096249 25.210545 83.885704 54.5481245 1.736779823 0.144339 124 45 SH19853 19853 Negative Control 28.690266 101.22263 64.956448 1.812622268 0.144308 198 86 SH11406 11406 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3916 3933 42.896895 121.00569 81.9512925 1.913555807 0.144269 180 38 SH4922 4922 snR9 snR9 16 35 27.905077 98.833283 63.36918 1.801878087 0.144225 188 25 SH7645 7645 snoRNA cluster1 5' 23.869169 98.07797 23.869169 75.208801 49.538985 1.694947104 0.144198 90 6 SH21456 21456 copy of SH552 56.387389 138.46993 97.4286595 1.988686727 0.144163 84 71 SH11502 11502 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4396 4411 49.131522 129.128212 89.129867 1.950023258 0.144095 156 74 SH2681 2681 Pro4 tRNA 71 83 177.8497 296.120024 236.984862 2.374720605 0.144095 113 31 SH10357 10357 RUF7 RUF7 396 413 140.387873 248.079198 194.2335355 2.288324215 0.144036 148 64 SH19791 19791 Negative Control 54.225328 135.717249 94.9712885 1.97759233 0.144008 96 46 SH4208 4208 telomerase RNA telomerase 76 93 24.106575 76.662687 50.384631 1.702298082 0.144006 44 97 SH8712 8712 LSR1 / U2 RNA U2 201 218 26.29001 91.125281 58.7076455 1.768694663 0.143898 198 21 SH14161 14161 MT COB intronic 25.847053 112.994176 25.847053 88.147123 56.997088 1.755852668 0.14382 144 7 SH7531 7531 snR79 5' - 17 -4 17 115.377922 215.795136 165.586529 2.219025003 0.143819 158 95 SH13571 13571 MT COX1 Exon 6 24.943949 106.096211 24.943949 82.152262 53.5481055 1.72874411 0.143786 32 54 SH5358 5358 snR30 3' 1837.127285 2232.659145 2034.893215 3.308541624 0.143768 163 67 SH17281 17281 YHR141C_8_382752_381991_INTRON_5_445 intron 26.30336 116.532415 26.30336 91.229055 58.7662075 1.769127664 0.143759 5 94 SH165 165 Arg2 5' flank 28.168446 100.052505 64.1104755 1.806928998 0.143731 18 32 SH6862 6862 snR56 5' 22.440858 66.934413 44.6876355 1.650187376 0.143731 42 80 SH20040 20040 YBR189W spliced 74.025584 161.32521 117.675397 2.070685672 0.143727 19 97 SH14308 14308 MT VAR1 includes 5’ processing site VAR1 23.904885 98.365115 23.904885 75.46023 49.6825575 1.696203944 0.143722 19 74 SH20192 20192 YDL219W spliced 26.819044 94.040851 60.4299475 1.781252217 0.143629 92 82 SH20393 20393 YFL039C spliced 41.569911 119.297769 80.43384 1.905438803 0.1436 206 100 SH11767 11767 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5721 5738 27.914371 98.926021 63.420196 1.80222758 0.143566 54 70 SH6132 6132 snR39B snR39B 1 18 100.725521 196.527982 148.6267515 2.172096986 0.143561 206 33 SH6644 6644 snR48 snR48 46 63 26.355846 91.609955 58.9829005 1.770726125 0.143506 170 60 SH17753 17753 YKL157W_11_154993_158183_INTRON_282_664 intron 30.403538 133.840796 30.403538 104.437258 67.420398 1.828791312 0.143496 184 65 SH15853 15853 YDL075W_4_322225_322987_INTRON_58_478 3' exon 27.904061 125.792762 27.904061 98.888701 63.396381 1.802064467 0.143452 150 103 SH1015 1015 Gly2 66-72 + 3' flank 66 82 24.819177 81.354148 53.0866625 1.724985423 0.143442 77 13 SH20322 20322 YER056C-A spliced 224.772319 356.256215 290.514267 2.463167465 0.143411 201 90 SH8553 8553 snR19 / U1 RNA U1 261 277 26.177637 90.410491 58.294064 1.765624333 0.14339 13 41 SH16070 16070 YDR005C_4_458099_456832_INTRON_7_86 intron/exon 24.25482 100.935791 24.25482 77.680971 50.9678955 1.707296702 0.143223 164 51 SH9286 9286 RUF1 RUF1 6 22 26.318192 91.383353 58.8507725 1.769752168 0.143189 87 25 SH16444 16444 YER074W_5_306319_307192_INTRON_4_469 intron 28.269253 127.760567 28.269253 100.491314 64.3802835 1.808752885 0.143164 90 68 SH7350 7350 snR68 5' 23.367919 72.295301 47.83161 1.679714999 0.143155 35 30 SH10203 10203 RUF6 RUF6 861 885 26.243111 90.877164 58.5601375 1.767602088 0.143144 103 38 SH122 122 Arg1 5' flank - tRNA5 5' flank 5 23.700836 74.277465 48.9891505 1.690099909 0.143142 175 22 SH4032 4032 SRP RNA SRP RNA 51 70 24.341401 78.248458 51.2949295 1.710074437 0.14314 61 86 SH9180 9180 snR7 U5 RNA U5 171 188 25.621871 86.717818 56.1698445 1.749503222 0.143036 66 67 SH5220 5220 snR30 5' 25.463008 85.66708 55.565044 1.744801663 0.143035 57 66 SH16877 16877 YGL187C_7_150529_149708_INTRON_1_342 3' exon 26.768098 119.630696 26.768098 93.862598 60.315348 1.780427838 0.142984 117 89 SH16046 16046 YDL191W_4_117665_118518_INTRON_4_494 intron 25.707532 112.000246 25.707532 87.292714 56.500123 1.752049393 0.142972 156 65 SH19904 19904 snR17B spliced 32.949791 108.132676 70.5412335 1.84844305 0.142956 164 92 SH8754 8754 LSR1 / U2 RNA U2 411 430 24.076305 76.557674 50.3169895 1.701714649 0.142946 81 35 SH13038 13038 MT COX1 COX1ai2 25.899184 113.474717 25.899184 88.575533 57.2373585 1.757679583 0.142944 144 65 SH17171 17171 YHR021C_8_148660_147862_INTRON_4_553 5' exon 51.585039 182.955097 51.585039 132.370058 91.9775485 1.96368183 0.142919 125 13 SH15008 15008 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.053571 107.012606 25.053571 82.959035 54.006303 1.732444449 0.142906 47 90 SH961 961 Gly1 tRNA 56 68 40.813374 118.356449 79.5849115 1.900830738 0.142853 110 16 SH4694 4694 snR4 snR4 6 22 199.850777 324.551555 262.201166 2.418634619 0.142841 35 100 SH751 751 Gln4 tRNA 26 42 26.293598 91.250411 58.7720045 1.769170503 0.142821 2 3 SH16978 16978 YGR034W_7_555923_556666_INTRON_20_496 intron 26.801907 119.826594 26.801907 94.024687 60.413297 1.781132538 0.142819 147 23 SH4510 4510 U3b (snR17b) U3b 106 122 27.08992 95.309709 61.1998145 1.786750106 0.142736 150 64 SH19168 19168 YPL079W_16_406631_407534_INTRON_12_432 exon/intron 29.087297 130.140811 29.087297 102.053514 65.5704055 1.816707869 0.142671 124 73 SH19495 19495 YPT1 62.744334 146.777644 104.760989 2.02019959 0.142618 182 8 SH20004 20004 YBR078W spliced 26.028896 89.47913 57.754013 1.761582166 0.142596 127 57 SH2929 2929 Pro8 3' flank 33.429317 108.772419 71.100868 1.851874903 0.142561 131 18 SH13402 13402 MT COX1 intronic 1034.100689 2369.455945 1034.100689 1336.355256 1185.227973 3.073801893 0.142551 109 15 SH10869 10869 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1231 1247 49.311507 129.464679 89.388093 1.951279672 0.142529 32 85 SH2102 2102 Lys4 3' flank 27.88062 98.856184 63.368402 1.801872755 0.142517 207 13 SH1198 1198 Ile1 5' flank 27.408784 96.748218 62.078501 1.792941222 0.142494 123 35 SH152 152 Arg1 3' flank 24.66916 80.4458 52.55748 1.720634534 0.142476 108 87 SH3042 3042 Ser3 5' flank 26.91909 94.57354 60.746315 1.783519938 0.142428 5 82 SH6721 6721 snR49 snR49 131 152 23.006059 70.2233 46.6146795 1.668522703 0.142414 182 90 SH21410 21410 Ser3 spliced 30.63898 104.927758 67.783369 1.831123151 0.142394 58 2 SH1909 1909 Lys1 tRNA 1 13 29.934733 103.641099 66.787916 1.824697892 0.14235 3 103 SH5859 5859 snR35 snR35 481 497 28.360379 100.708158 64.5342685 1.809790392 0.142326 101 22 SH11923 11923 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6501 6514 31.337258 106.043886 68.690572 1.836897133 0.142301 124 34 SH17524 17524 YJL136C_10_156971_156248_INTRON_25_484 intron 26.72229 119.43215 26.72229 93.70986 60.216075 1.779712444 0.142301 19 20 SH9114 9114 snR14 / U4 RNA 3' 28.898757 101.72264 65.3106985 1.814984329 0.142276 79 30 SH21512 21512 copy of SH2857 68.131313 153.792005 110.961659 2.045172941 0.142113 170 89 SH7649 7649 snoRNA cluster1 5' 23.812777 97.8421 23.812777 75.029323 49.42105 1.693911968 0.142085 19 39 SH3944 3944 RNase MRP RNaseMRP 136 157 25.378467 85.195576 55.2870215 1.742623194 0.14206 164 50 SH20965 20965 YML026C spliced 26.302486 91.384706 58.843596 1.769699205 0.142034 40 54 SH7787 7787 snoRNA cluster1 intergenic/snR75 45.594336 169.249809 45.594336 124.655473 85.1249045 1.930056638 0.142004 182 101 SH6749 6749 snR50 5' 26.697544 93.622415 60.1599795 1.77930768 0.141998 3 15 SH7103 7103 snR63 snR63 21 38 25.148072 83.674023 54.4110475 1.735687087 0.141967 147 85 SH18652 18652 YNL112W_14_413636_416278_INTRON_1274_2275 intron 23.026105 92.398734 23.026105 70.372629 46.699367 1.669310994 0.141959 84 2 SH17503 17503 YJL136C_10_156971_156248_INTRON_25_484 5' exon 49.236225 177.646182 49.236225 129.409957 89.323091 1.950963743 0.141897 121 30 SH13478 13478 MT COX1 intronic 26.501391 118.259475 26.501391 92.758084 59.6297375 1.775462898 0.141888 121 98 SH15756 15756 YCR031C_3_178212_177492_INTRON_8_314 intron 25.803307 112.83552 25.803307 88.032213 56.91776 1.7552478 0.141855 35 72 SH15383 15383 YBL027W_2_168385_169338_INTRON_3_386 intron/exon 49.178865 177.519207 49.178865 129.340342 89.2596035 1.950654953 0.141832 93 101 SH10279 10279 RUF7 RUF7 6 23 31.281062 105.993863 68.6374625 1.836561219 0.14181 108 76 SH6756 6756 snR50 5' 27.597769 97.648646 62.6232075 1.796735308 0.141756 73 104 SH12755 12755 MT COX1 COX1ai1 28.016673 126.542829 28.016673 99.526156 63.7714145 1.80462605 0.14175 17 29 SH10257 10257 RUF6 3' 26.399535 92.077051 59.238293 1.772602535 0.141713 123 83 SH16040 16040 YDL191W_4_117665_118518_INTRON_4_494 intron 26.767712 119.72421 26.767712 93.956498 60.362105 1.780764376 0.141687 45 25 SH8771 8771 LSR1 / U2 RNA U2 496 508 31.82497 106.726628 69.275799 1.840581543 0.141646 41 88 SH5232 5232 snR30 snR30 11 25 25.870213 88.500814 57.1855135 1.757286025 0.141628 188 21 SH17823 17823 YKR057W_11_551293_551878_INTRON_25_346 intron 23.573288 96.202097 23.573288 73.628809 48.6010485 1.686645639 0.141614 3 74 SH10812 10812 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 946 966 482.91524 683.662722 583.288981 2.765883772 0.141609 49 35 SH14027 14027 MT COB Exon4 24.702386 104.440577 24.702386 80.738191 52.7202885 1.721977778 0.141605 139 74 SH2050 2050 Lys4 5' flank 26.221168 90.873853 58.5475105 1.767508433 0.141581 96 69 SH5375 5375 snR31 5' 26.864049 94.394595 60.629322 1.782682712 0.141545 189 3 SH4420 4420 telomerase RNA telomerase 1136 1155 26.697255 93.655679 60.176467 1.779426686 0.141528 29 23 SH6571 6571 snR47 5' 109.80196 208.766518 159.284239 2.202172805 0.141523 32 97 SH18335 18335 YML124C_13_23684_22049_INTRON_26_323 5' exon 126.984137 357.171301 126.984137 231.187164 179.0856505 2.253060789 0.141517 82 63 SH15146 15146 MT tRNA Thr1 reverse complement tRNA 25.868001 113.365615 25.868001 88.497614 57.1828075 1.757265474 0.1415 135 16 SH8876 8876 LSR1 / U2 RNA U2 1021 1037 100.610635 196.615925 148.61328 2.172057619 0.141462 49 104 SH6927 6927 snR58 5' - 15 -4 15 26.176136 90.583102 58.379619 1.766261256 0.141421 22 64 SH7666 7666 snoRNA cluster1 snR78 26.33833 117.030083 26.33833 91.691753 59.0150415 1.770962717 0.141366 192 73 SH7597 7597 snR189 snR189 56 68 29.409238 102.723637 66.0664375 1.819980889 0.141365 180 69 SH10356 10356 RUF7 RUF7 391 406 58.34938 141.224941 99.7871605 1.999074665 0.141352 208 84 SH10754 10754 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 656 674 29.608079 103.093936 66.3510075 1.821847522 0.141334 37 92 SH9359 9359 RUF1 RUF1 371 387 34.318795 109.975655 72.147225 1.858219631 0.141263 99 70 SH7112 7112 snR63 snR63 66 83 24.551808 79.78429 52.168049 1.717404595 0.141168 64 6 SH4740 4740 snR4 3' 43.292183 121.719556 82.5058695 1.916484846 0.141152 96 75 SH7047 7047 snR62 snR62 26 45 23.768447 74.836633 49.30254 1.692869294 0.141105 177 25 SH8116 8116 snoRNA cluster 3; 5'/snR41 24.802915 105.254026 24.802915 81.451111 53.127013 1.725315399 0.141038 90 4 SH19249 19249 YPL129W_16_305297_306136_INTRON_10_114 intron 28.010343 126.565321 28.010343 99.554978 63.7826605 1.804702631 0.141017 61 23 SH17751 17751 YKL157W_11_154993_158183_INTRON_282_664 intron 25.231232 108.552046 25.231232 84.320814 54.776023 1.738590497 0.140977 113 25 SH7633 7633 snR189 3' 24.681246 80.653161 52.6672035 1.721540259 0.14096 15 20 SH12241 12241 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.359276 123.006669 27.359276 96.647393 62.0033345 1.792415046 0.14091 115 38 SH14166 14166 MT COB intronic 39.190817 154.513707 39.190817 116.32289 77.7568535 1.890738678 0.140872 186 76 SH3593 3593 Val1 5' flank 25.660907 87.176398 56.4186525 1.751422709 0.140804 189 38 SH16668 16668 YFR032C-A_6_223758_223245_INTRON_1_331 intron 28.583008 128.792651 28.583008 101.209643 64.8963255 1.812220107 0.140799 77 3 SH5418 5418 snR31 snR31 156 172 25.535706 86.346003 55.9408545 1.747729096 0.140788 201 7 SH8760 8760 LSR1 / U2 RNA U2 441 457 30.735319 105.1929 67.9641095 1.832279631 0.140784 22 30 SH823 823 Glu1 3' flank 26.549144 93.057366 59.803255 1.776724823 0.140735 134 5 SH8448 8448 snoRNA cluster 5 snR128 43.198037 163.821405 43.198037 121.623368 82.4107025 1.915983616 0.140702 193 36 SH19038 19038 YOR234C_15_779404_778554_INTRON_20_546 intron 37.516098 150.634193 37.516098 114.118095 75.8170965 1.879767149 0.140699 55 31 SH19541 19541 CBP1 1.2 25.970327 89.25985 57.6150885 1.760536233 0.140683 43 97 SH1885 1885 Leu9 3' flank 26.514168 92.914479 59.7143235 1.776078517 0.14057 21 54 SH11410 11410 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3936 3952 92.215031 185.601258 138.9081445 2.14272771 0.140555 27 91 SH8136 8136 snoRNA cluster 3; snR41/intergenic 25.085665 107.469338 25.085665 83.383673 54.234669 1.734276994 0.140496 74 33 SH16089 16089 YDR025W_4_491510_492319_INTRON_46_384 intron 25.495947 110.605559 25.495947 86.109612 55.8027795 1.746655831 0.140483 54 74 SH7532 7532 snR79 snR79 1 20 176.623822 295.204047 235.9139345 2.372753594 0.140452 194 93 SH10284 10284 RUF7 RUF7 31 45 27.815844 98.731323 63.2735835 1.801222431 0.140381 173 52 SH11648 11648 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5126 5144 26.756448 94.002973 60.3797105 1.780891026 0.140378 160 57 SH9033 9033 snR17a / U3a U3a 451 465 139.65246 247.681244 193.666852 2.287055293 0.140357 161 85 SH804 804 Glu1 tRNA 36 48 1330.570927 1677.270945 1503.920936 3.177225005 0.140356 149 88 SH759 759 Gln4 66-72 + 3' flank 66 25.315162 84.928992 55.122077 1.741325573 0.140343 91 104 SH21437 21437 TH204 - control oligo; WTP_219 29.36619 102.700724 66.033457 1.819764034 0.140318 43 75 SH3032 3032 Ser2 3' flank 28.582555 101.2349 64.9087275 1.812303095 0.140313 128 40 SH4702 4702 snR4 snR4 46 65 24.938514 82.421872 53.680193 1.729814069 0.140233 152 52 SH17149 17149 YHR012W_8_129473_130440_INTRON_49_167 exon/intron 26.777123 119.888946 26.777123 94.111823 60.444473 1.781356595 0.140148 102 62 SH4276 4276 telomerase RNA telomerase 416 431 42.334425 120.516553 81.425489 1.910760375 0.14008 53 40 SH10996 10996 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1866 1882 40172.0045 33674.61728 36923.31089 4.567300637 0.140016 50 96 SH16251 16251 YDR397C_4_1266887_1266355_INTRON_38_129 intron 25.275606 108.977311 25.275606 84.701705 54.9886555 1.740273101 0.139968 174 80 SH3882 3882 RNaseP 3' 26.026644 89.708295 57.8674695 1.762434491 0.139937 12 46 SH11907 11907 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6421 6439 31210.31073 26969.57673 29089.94373 4.463742881 0.139913 120 93 SH719 719 Gln3 3' flank 139.286021 247.2843 193.2851605 2.286198512 0.139857 208 4 SH13021 13021 MT COX1 COX1ai2 26.002615 114.55613 26.002615 89.553515 57.778065 1.761762993 0.139856 146 6 SH20919 20919 YLR344W spliced 26.605111 93.371234 59.9881725 1.778065632 0.139835 189 83 SH9113 9113 snR14 / U4 RNA 3' 32.660642 107.922968 70.291805 1.846904696 0.139769 61 85 SH4193 4193 telomerase RNA telomerase 1 19 198.276336 323.162903 260.7196195 2.416173714 0.139756 122 15 SH5114 5114 snR11 snR11 171 193 26.691378 93.761964 60.226671 1.779788858 0.139728 164 104 SH8042 8042 snoRNA cluster 2 intergenic 25.372239 109.73408 25.372239 85.361841 55.36704 1.743251306 0.139691 136 65 SH16463 16463 YER093C-A_5_348396_347908_INTRON_125_199 intron 27.499517 123.868463 27.499517 97.368946 62.4342315 1.79542277 0.139666 196 104 SH14684 14684 MT 21S rRNA 21S rRNA4 25.10135 107.663526 25.10135 83.562176 54.331763 1.735053798 0.139658 157 64 SH10606 10606 RUF8 3' 30.867264 105.497201 68.1822325 1.833671217 0.139632 115 14 SH20404 20404 YFR031C-A spliced 137.355699 244.849307 191.102503 2.281266375 0.139505 213 58 SH6249 6249 snR42 snR42 26 42 26.243669 91.225881 58.734775 1.768895309 0.139452 49 28 SH828 828 Glu2 5' flank 31.249238 106.07445 68.661844 1.836715463 0.139407 119 78 SH9713 9713 RUF4 RUF4 341 359 27.690281 98.244421 62.967351 1.799115423 0.139394 10 8 SH20348 20348 YER102W spliced 33.319151 108.797733 71.058442 1.851615681 0.139382 110 70 SH4240 4240 telomerase RNA telomerase 236 250 29.487185 102.97778 66.2324825 1.821071033 0.13936 170 63 SH18542 18542 YMR230W_13_732413_733140_INTRON_53_462 intron 28.195752 127.71547 28.195752 100.519718 64.357735 1.808600751 0.139354 143 72 SH15909 15909 YDL083C_4_307788_306925_INTRON_25_456 intron 25.565919 111.250736 25.565919 86.684817 56.125368 1.749159202 0.13923 121 53 SH1834 1834 Leu9 5' flank 25.426013 85.76021 55.5931115 1.745020982 0.139198 205 6 SH375 375 Asn1 5' flank 26.194765 90.919985 58.557375 1.7675816 0.139162 164 96 SH13576 13576 MT COX1 Exon 6 25.736389 112.567853 25.736389 87.831464 56.7839265 1.75422542 0.139119 147 79 SH6484 6484 snR46 5' 25.266574 84.717427 54.9920005 1.740299519 0.139104 107 104 SH16191 16191 YDR381C-A_4_1238839_1238301_INTRON_27_220 5' exon 26.753533 119.840666 26.753533 94.087133 60.420333 1.781183115 0.139062 158 81 SH7654 7654 snoRNA cluster1 5' 25.094336 107.66728 25.094336 83.572944 54.33364 1.735068801 0.138995 90 104 SH21632 21632 copy of SH7932 27.389519 96.937446 62.1634825 1.793535336 0.138871 142 27 SH9106 9106 snR14 / U4 RNA 146-160 + 3' 146 24.532731 79.852774 52.1927525 1.717610201 0.138848 2 2 SH4517 4517 U3b (snR17b) U3b 141 158 24.745306 81.256262 53.000784 1.724282294 0.138841 110 88 SH7227 7227 snR65 5' 283.565258 432.706447 358.1358525 2.5540478 0.13879 123 80 SH3973 3973 RNase MRP RNaseMRP 281 293 30.223687 104.374 67.2988435 1.828007601 0.138695 176 24 SH16035 16035 YDL191W_4_117665_118518_INTRON_4_494 intron 28.736651 129.349294 28.736651 101.612643 65.174647 1.814078688 0.138681 110 25 SH15368 15368 YBL027W_2_168385_169338_INTRON_3_386 intron 38.347954 152.661452 38.347954 115.313498 76.830726 1.885534937 0.138672 211 30 SH4278 4278 telomerase RNA telomerase 426 440 29.554041 103.143088 66.3485645 1.821831531 0.138607 11 100 SH1711 1711 Leu6 3' flank 26.788704 94.277302 60.533003 1.781992219 0.138605 82 5 SH14507 14507 MT 21S rRNA 21S rRNA3 27.404808 123.434916 27.404808 97.030108 62.217458 1.793912263 0.138552 77 86 SH6820 6820 snR52 snR52 6 23 16416.70587 15337.96218 15877.33403 4.200777582 0.138544 113 47 SH19762 19762 Negative Control 26.53092 93.139816 59.835368 1.776957966 0.1385 8 95 SH16821 16821 YGL178W_7_167356_170575_INTRON_4_643 intron 26.435122 118.06111 26.435122 92.625988 59.530555 1.774739931 0.138493 64 69 SH11918 11918 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6476 6494 37.721373 114.499264 76.1103185 1.881443539 0.138481 157 13 SH796 796 Glu1 5' flank - tRNA12 12 72.509242 159.821918 116.16558 2.065077465 0.138476 47 2 SH2716 2716 Pro5 5' flank 25.802287 88.331107 57.066697 1.756382736 0.138475 148 97 SH9481 9481 RUF2 RUF2 246 262 97.308808 192.560825 144.9348165 2.161172725 0.138475 204 12 SH6318 6318 snR42 3' 24.772411 81.472582 53.1224965 1.725278477 0.138412 58 102 SH21067 21067 YMR201C spliced 102.852869 199.939731 151.3963 2.180115261 0.138275 173 7 SH11489 11489 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4331 4348 370.077742 543.886508 456.982125 2.659899213 0.138228 122 28 SH6998 6998 snR60 snR60 71 88 26.445604 92.726317 59.5859605 1.775143944 0.138196 109 56 SH2283 2283 Phe2 tRNA 11 25 491.182612 695.387496 593.285054 2.773263408 0.13817 210 84 SH15225 15225 MT COX3 cox3 26.41968 117.970416 26.41968 92.550736 59.485208 1.774408985 0.138169 54 102 SH7811 7811 snoRNA cluster1 intergenic 30.732412 135.066846 30.732412 105.334434 68.033423 1.832722322 0.138156 148 77 SH9075 9075 snR14 / U4 RNA 5' - 9 -9 9 27.337623 96.761567 62.049595 1.792738951 0.13813 95 64 SH5084 5084 snR11 snR11 21 35 993.682998 1293.425706 1143.554352 3.058256811 0.138119 129 32 SH5092 5092 snR11 snR11 61 79 25.178508 84.223729 54.7011185 1.737996207 0.138042 144 27 SH2796 2796 Pro6 tRNA 71 83 188.230098 310.597179 249.4136385 2.396920198 0.138037 162 55 SH20991 20991 YML073C spliced 30.605538 105.110203 67.8578705 1.831600227 0.138027 56 47 SH1725 1725 Leu7 5' flank 27.741571 98.58073 63.1611505 1.800450032 0.138019 23 21 SH15731 15731 YBR230C_2_680008_679507_INTRON_12_108 intron 26.053335 115.122537 26.053335 90.069202 58.0612685 1.76388652 0.137982 33 62 SH17693 17693 YKL006W_11_431544_432358_INTRON_130_527 intron 48.428813 176.055463 48.428813 128.62665 88.5277315 1.947079336 0.137951 46 21 SH17197 17197 YHR021C_8_148660_147862_INTRON_4_553 intron 27.085269 121.736637 27.085269 95.651368 61.3683185 1.787944224 0.137899 100 87 SH20978 20978 YML056C spliced 25.595266 87.001386 56.298326 1.750495482 0.137869 36 83 SH4829 4829 snR8 5' 27.623069 98.060461 62.841765 1.798248374 0.137868 164 16 SH15591 15591 YBR084C-A_2_415219_414144_INTRON_3_508 3' exon 30.064108 133.192387 30.064108 104.128279 67.0961935 1.826697882 0.137834 208 19 SH12769 12769 MT COX1 COX1ai1 73.835144 234.439797 73.835144 161.604653 117.7198985 2.070849879 0.137807 39 55 SH3933 3933 RNase MRP RNaseMRP 81 96 30.075742 104.153245 67.1144935 1.826816317 0.13777 200 11 SH1012 1012 Gly2 tRNA 51 63 46.130314 125.611537 85.8709255 1.933846144 0.137747 76 7 SH4594 4594 U3b (snR17b) 3' 28.789688 101.764242 65.276965 1.814759954 0.137719 96 92 SH14975 14975 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 23.945991 99.115288 23.945991 76.169297 50.057644 1.699470405 0.137707 69 13 SH8165 8165 snoRNA cluster 3; snR70 54.780919 190.662123 54.780919 136.881204 95.8310615 1.981506299 0.137665 91 13 SH30 30 Ala1 tRNA 46 58 27.803473 98.887788 63.3456305 1.801716663 0.137646 99 84 SH20428 20428 YGL033W spliced 30.704807 105.315491 68.010149 1.832573726 0.137595 210 83 SH9349 9349 RUF1 RUF1 321 340 24.314179 78.528523 51.421351 1.711143483 0.137566 183 11 SH2066 2066 Lys4 5' flank - tRNA12 12 25.890069 89.004653 57.447361 1.759270083 0.13756 15 53 SH19747 19747 Negative Control 37.368289 114.109792 75.7390405 1.879319799 0.137524 191 30 SH6173 6173 snR40 5' 24.346064 78.741562 51.543813 1.712176543 0.137505 139 71 SH9770 9770 RUF4 RUF4 626 638 37.97465 114.873893 76.4242715 1.883231308 0.137479 118 95 SH2733 2733 Pro5 tRNA-intron 46 61 71.541543 158.658905 115.100224 2.061076169 0.137453 202 73 SH12708 12708 MT ORF 8 (hypothetical) ORF8 24.081635 100.114585 24.081635 77.03295 50.5572925 1.703783808 0.137403 29 27 SH9138 9138 snR7 U5 RNA 5' 24.392653 79.055597 51.724125 1.713693153 0.13739 125 86 SH4394 4394 telomerase RNA telomerase 1006 1027 26.3883 92.410208 59.399254 1.773780991 0.13738 156 18 SH8140 8140 snoRNA cluster 3; intergenic 91.480012 275.457761 91.480012 184.977749 138.2288805 2.140598791 0.137287 166 41 SH13473 13473 MT COX1 intronic 24.49089 103.203817 24.49089 79.712927 52.1019085 1.716853632 0.13723 100 5 SH5031 5031 snR10 snR10 186 202 24.831797 81.972305 53.402051 1.727557937 0.137187 79 95 SH6442 6442 snR45 snR45 56 72 33.367499 108.976501 71.172 1.85230917 0.137171 156 99 SH6055 6055 snR37 snR37 191 208 27.028378 95.452015 61.2401965 1.787036576 0.137171 14 86 SH4727 4727 snR4 171-186 + 3' 171 30.772963 105.464675 68.118819 1.83326711 0.137148 62 71 SH17606 17606 YJL205C-A_10_50443_50139_INTRON_33_175 intron 56.93189 195.632414 56.93189 139.700524 98.316207 1.992625115 0.137136 73 71 SH12558 12558 MT_15S MT_15S 46.154256 170.835645 46.154256 125.681389 85.9178225 1.934083262 0.137132 39 14 SH18861 18861 YNR053C_14_723108_721117_INTRON_811_1341 intron 24.219367 101.169393 24.219367 77.950026 51.0846965 1.708290818 0.137095 147 78 SH3548 3548 Tyr2 tRNA 11 27 48.576808 128.880171 88.7284895 1.948063088 0.137036 24 35 SH8468 8468 snoRNA cluster 5 3' 25.195932 108.626623 25.195932 84.430691 54.8133115 1.73888604 0.137031 206 6 SH9973 9973 RUF5-1 RUF5-1 671 692 28.350862 100.973725 64.6622935 1.810651104 0.137028 185 36 SH3574 3574 Tyr2 3' flank 26.361262 92.261119 59.3111905 1.773136641 0.136995 66 8 SH21059 21059 YMR194W spliced 28.08392 100.201925 64.1429225 1.807148744 0.136988 138 80 SH17005 17005 YGR148C_7_788173_787307_INTRON_1_392 5' exon 187.686397 496.782947 187.686397 310.09655 248.8914735 2.396010019 0.136982 49 57 SH6406 6406 snR43 3' 26.607225 93.590192 60.0987085 1.778865139 0.136978 182 63 SH3493 3493 Tyr1 tRNA 6 20 72.606372 160.081755 116.3440635 2.065744228 0.136946 95 88 SH17164 17164 YHR016C_8_138446_136872_INTRON_48_215 intron 29.964096 132.960531 29.964096 103.996435 66.9802655 1.825946865 0.136884 29 13 SH21051 21051 YMR143W spliced 26.198003 91.15604 58.6770215 1.768468061 0.136871 3 56 SH711 711 Gln3 3' flank 23.365128 72.741782 48.053455 1.681724619 0.136826 97 11 SH10712 10712 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 446 462 26.500917 93.134792 59.8178545 1.776830832 0.136746 191 10 SH13519 13519 MT COX1 intronic 26.431338 118.200017 26.431338 92.768679 59.6000085 1.775246322 0.13672 147 46 SH1176 1176 His1 3' flank 130.881004 236.880703 183.8808535 2.264536511 0.136715 179 22 SH12175 12175 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7761 7776 317.065878 476.479151 396.7725145 2.59854158 0.136697 143 47 SH19365 19365 YPR028W_16_623522_624197_INTRON_52_184 intron 40.568812 157.972148 40.568812 118.403336 79.486074 1.900291047 0.136669 212 40 SH7178 7178 snR64 5' 26.50077 93.143352 59.822061 1.776861371 0.13662 103 81 SH10225 10225 RUF6 RUF6 971 987 25.758835 88.209997 56.984416 1.755756102 0.136592 192 46 SH12424 12424 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.487272 128.743686 28.487272 101.256414 64.871843 1.812056236 0.136568 68 13 SH7707 7707 snoRNA cluster1 snR77 258.405232 658.353008 258.405232 400.947776 329.676504 2.518087996 0.136396 146 89 SH4043 4043 SRP RNA SRP RNA 106 125 32.834232 108.327835 70.5810335 1.848688013 0.136356 167 84 SH9898 9898 RUF5-1 RUF5-1 296 310 28.541561 101.371635 64.956598 1.812623271 0.136333 128 90 SH7424 7424 snR69 snR69 21 38 25.888259 89.108147 57.498203 1.759654272 0.136294 49 32 SH2234 2234 Phe1 tRNA-intron/exon 46 62 31.036121 105.948212 68.4921665 1.835640904 0.136278 130 101 SH3572 3572 Tyr2 3' flank 29.254595 102.715426 65.9850105 1.81944529 0.136235 53 68 SH11123 11123 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2501 2516 81.644016 172.073992 126.859004 2.103321297 0.136214 156 54 SH19919 19919 YAL030W spliced 37.056076 113.791856 75.423966 1.877509365 0.136159 21 41 SH17075 17075 YGR225W_7_945138_946919_INTRON_1184_1276 intron 25.612788 111.885233 25.612788 87.272445 56.4426165 1.751607138 0.136144 164 7 SH7465 7465 snR71 5' 24.714865 81.284419 52.999642 1.724272936 0.136135 166 73 SH18913 18913 YOL120C_15_94401_93394_INTRON_113_559 intron 24.279612 101.701669 24.279612 78.422057 51.3508345 1.710547506 0.136118 66 33 SH17653 17653 YJR145C_10_702761_701720_INTRON_15_270 intron/exon 30.089046 133.359142 30.089046 104.270096 67.179571 1.827237226 0.1361 73 65 SH21695 21695 copy of SH10660 27.928911 99.576556 63.7527335 1.804498811 0.136051 184 101 SH8595 8595 snR19 / U1 RNA U1 471 488 24.480033 79.740369 52.110201 1.716922748 0.136045 14 79 SH12681 12681 MT tRNA Trp tRNA 32.870863 140.263046 32.870863 108.392183 70.631523 1.848998571 0.136038 104 102 SH8092 8092 snoRNA cluster 2 3' 26.207188 116.505029 26.207188 91.297841 58.7525145 1.769026458 0.136025 140 30 SH1298 1298 Ile2 3' flank 25.259321 84.944967 55.102144 1.741168497 0.135941 77 4 SH18513 18513 YMR201C_13_667043_665844_INTRON_28_111 intron 27.567635 124.527713 27.567635 97.960078 62.7638565 1.797709621 0.135937 30 62 SH12423 12423 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 37.403424 150.647228 37.403424 114.243804 75.823614 1.87980448 0.135917 124 33 SH7096 7096 snR63 5' - 7 -14 7 26.747112 94.293594 60.520353 1.781901452 0.135882 72 46 SH7789 7789 snoRNA cluster1 snR75 65.335155 215.022031 65.335155 150.686876 108.0110155 2.033468049 0.13587 158 77 SH20246 20246 YDR367W spliced 24.827571 82.065689 53.44663 1.727920327 0.13577 176 23 SH14026 14026 MT COB Exon4 24.541114 103.706721 24.541114 80.165607 52.3533605 1.718944564 0.13577 113 37 SH15879 15879 YDL082W_4_308423_309387_INTRON_5_369 intron 26.41004 118.129133 26.41004 92.719093 59.5645665 1.774987985 0.1357 35 89 SH18804 18804 YNL301C_14_64561_63569_INTRON_113_544 intron 26.974014 121.295633 26.974014 95.321619 61.1478165 1.786380954 0.13567 75 90 SH10680 10680 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 286 299 1175.576033 1505.519409 1340.547721 3.127282279 0.13566 186 4 SH19247 19247 YPL129W_16_305297_306136_INTRON_10_114 5' exon 26.566214 119.077565 26.566214 93.511351 60.0387825 1.778431877 0.135568 75 42 SH17111 17111 YHR001W-A_8_107819_108115_INTRON_7_69 intron/exon 29.518512 131.762649 29.518512 103.244137 66.3813245 1.822045914 0.135557 126 45 SH3716 3716 Val3 61-73 + 3' flank 61 30.092931 104.308043 67.200487 1.82737242 0.135544 24 53 SH11928 11928 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6526 6541 7771.302853 7965.189112 7868.245983 3.895877929 0.135503 175 14 SH11736 11736 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5566 5586 30.833303 105.670184 68.2517435 1.83411375 0.135443 200 88 SH21739 21739 copy of SH12549 24.389604 79.198341 51.7939725 1.714279222 0.135424 136 13 SH4392 4392 telomerase RNA telomerase 996 1015 26.486469 93.167597 59.827033 1.776897465 0.135419 21 98 SH18176 18176 YLR448W_12_1028848_1029762_INTRON_16_399 intron 24.247964 101.522878 24.247964 78.274914 51.261439 1.709790793 0.135396 23 19 SH5924 5924 snR36 snR36 76 98 26.244057 91.609168 58.9266125 1.770311476 0.135393 29 43 SH11136 11136 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2566 2583 68.498548 154.852283 111.6754155 2.047957577 0.135337 209 29 SH1814 1814 Leu8 96-101 + 3' flank 96 25.337707 85.516849 55.427278 1.743723551 0.13532 106 84 SH10445 10445 RUF8 RUF8 151 167 54.724699 136.978242 95.8514705 1.98159878 0.135309 121 48 SH3616 3616 Val1 3' flank 25.423783 86.089644 55.7567135 1.746297167 0.135293 55 15 SH21444 21444 TH304 - control cDNA - flipped; WTP_226 31.279383 106.328372 68.8038775 1.837612914 0.135249 109 24 SH16069 16069 YDR005C_4_458099_456832_INTRON_7_86 intron 32.585961 139.65398 32.585961 108.068019 70.32699 1.84712203 0.13512 120 20 SH140 140 Arg1 3' flank 26.237441 91.589577 58.913509 1.770214891 0.13512 116 100 SH6244 6244 snR42 snR42 1 20 73.179783 160.984084 117.0819335 2.068489886 0.135098 192 6 SH6453 6453 snR45 snR45 111 127 26.607074 93.727741 60.1674075 1.779361299 0.135097 40 38 SH16831 16831 YGL178W_7_167356_170575_INTRON_4_643 intron 25.021714 107.448978 25.021714 83.427264 54.224489 1.734195468 0.135071 176 83 SH11313 11313 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3451 3468 36757.1401 31244.18459 34000.66235 4.531487377 0.135026 207 63 SH16656 16656 YFR032C-A_6_223758_223245_INTRON_1_331 5' exon 26.222952 116.723286 26.222952 91.500334 58.861643 1.76983238 0.135015 114 67 SH19924 19924 YAL030W spliced 30.688083 105.431373 68.059728 1.832890209 0.134977 208 77 SH5023 5023 snR10 snR10 146 160 51.290752 132.534846 91.912799 1.963375992 0.134957 52 52 SH7482 7482 snR71 snR71 26 43 24.203853 78.025515 51.114684 1.70854568 0.134934 160 7 SH743 743 Gln4 5' flank - tRNA7 7 26.996591 95.479861 61.238226 1.787022601 0.134903 2 82 SH12572 12572 MT_15S MT_15S 25.358604 110.056177 25.358604 85.697573 55.5280885 1.744512724 0.134838 2 73 SH17209 17209 YHR039C-A_8_187670_187164_INTRON_4_165 intron 24.86643 106.276334 24.86643 82.409904 53.638167 1.729473928 0.134787 92 44 SH19915 19915 YAL003W spliced 25.801315 88.664338 57.2328265 1.757645195 0.134733 130 9 SH1844 1844 Leu9 5' flank 25.435799 86.225584 55.8306915 1.746873007 0.134658 77 42 SH12098 12098 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7376 7394 25.575119 87.154685 56.364902 1.751008756 0.134648 194 39 SH10402 10402 RUF8 5' 26.335829 92.314133 59.324981 1.773237608 0.134591 204 16 SH6468 6468 snR45 3' 25.142247 84.286878 54.7145625 1.738102931 0.134545 132 28 SH20137 20137 YDL083C spliced 29.799629 103.821835 66.810732 1.82484623 0.134537 40 45 SH10896 10896 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1366 1381 357.397841 529.008123 443.202982 2.646602674 0.134526 83 101 SH1751 1751 Leu7 tRNA 51 63 30.456251 105.032523 67.744387 1.830873317 0.134523 177 37 SH10675 10675 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 261 279 25.417318 86.115838 55.766578 1.746373996 0.134511 26 65 SH1018 1018 Gly2 3' flank 26.734045 94.33687 60.5354575 1.782009829 0.13451 177 81 SH18530 18530 YMR225C_13_721402_720959_INTRON_59_205 3' exon 41.749043 160.830067 41.749043 120.081024 80.9150335 1.908029218 0.134455 120 9 SH7502 7502 snR71 3' 26.744549 94.390071 60.56731 1.782238286 0.134424 109 98 SH8846 8846 LSR1 / U2 RNA U2 871 887 27.707052 98.706032 63.206542 1.800762031 0.134395 180 58 SH7897 7897 snoRNA cluster1 intergenic 26.472893 118.656459 26.472893 93.183566 59.8282295 1.776906151 0.134374 158 24 SH19777 19777 Negative Control 28.839642 102.040206 65.439924 1.815842786 0.134354 55 64 SH13185 13185 MT COX1 Exon4 25.671202 112.500261 25.671202 87.829059 56.7501305 1.753966865 0.1343 5 69 SH6193 6193 snR40 snR40 26 41 38.537588 115.826708 77.182148 1.887516861 0.134275 64 13 SH2987 2987 Ser1 3' flank 26.305512 92.140291 59.2229015 1.772489681 0.134227 171 104 SH14769 14769 MT ORF11; tRNA Leu; tRNA Gln orf11 / tRNA Leu 37.85174 151.753481 37.85174 114.901741 76.3767405 1.88296112 0.134217 186 94 SH7998 7998 snoRNA cluster 2 intergenic 26.534939 119.009605 26.534939 93.474666 60.0048025 1.778186011 0.13417 162 67 SH3840 3840 RNaseP RNaseP 166 182 999.75321 1303.862584 1151.807897 3.061380052 0.134135 61 90 SH1470 1470 Leu2 3' flank 23.455771 73.48266 48.4692155 1.68546599 0.134117 174 29 SH19435 19435 YPR132W_16_794960_795762_INTRON_66_430 3' exon 41.645077 160.61176 41.645077 119.966683 80.80588 1.907442964 0.134109 87 16 SH14985 14985 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 23.712241 97.74418 23.712241 75.031939 49.37209 1.693481512 0.134037 39 10 SH14009 14009 MT COB intronic 28.589778 129.176437 28.589778 101.586659 65.0882185 1.813502385 0.134031 36 53 SH18188 18188 YML024W_13_225889_226697_INTRON_4_401 intron 477.389966 1156.574157 477.389966 680.184191 578.7870785 2.762518827 0.134026 114 65 SH12939 12939 MT COX1 COX1ai2 1391.114053 3143.031399 1391.114053 1752.917346 1572.0157 3.196456879 0.134003 201 98 SH15004 15004 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 23.291485 94.802584 23.291485 72.511099 47.901292 1.680347227 0.133995 172 103 SH15622 15622 YBR181C_2_592732_591670_INTRON_7_358 intron 27.856502 126.267922 27.856502 99.41142 63.633961 1.803688957 0.133985 150 65 SH9908 9908 RUF5-1 RUF5-1 346 365 26.940879 95.302479 61.121679 1.786195276 0.133946 25 90 SH7269 7269 snR65 3' 24.989065 83.309232 54.1491485 1.733591632 0.133905 131 16 SH15121 15121 MT tRNA Phe 5' 25.853865 113.948491 25.853865 89.094626 57.4742455 1.759473279 0.133902 105 31 SH4285 4285 telomerase RNA telomerase 461 475 70.499685 157.610428 114.0550565 2.057114544 0.133888 185 66 SH10673 10673 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 251 269 23.836898 75.799592 49.818245 1.697388424 0.13388 23 68 SH18786 18786 YNL301C_14_64561_63569_INTRON_113_544 intron 28.797268 129.784838 28.797268 101.98757 65.392419 1.815527403 0.133853 49 86 SH17973 17973 YLR185W_12_522665_523290_INTRON_8_366 3' exon 30.539275 134.766084 30.539275 105.226809 67.883042 1.831761296 0.133768 168 89 SH12106 12106 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7416 7429 96.302015 191.735346 144.0186805 2.158418828 0.133759 11 10 SH10748 10748 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 626 642 193.08561 317.694966 255.390288 2.407204378 0.133751 44 62 SH2909 2909 Pro8 tRNA 66 78 890.443969 1176.545855 1033.494912 3.014308343 0.13375 76 58 SH1757 1757 Leu7 81-84 + 3' flank 81 25.575235 87.2386 56.4069175 1.751332367 0.133719 144 80 SH19957 19957 YBL059C-A spliced 24.979232 83.260442 54.119837 1.73335648 0.133705 78 20 SH20368 20368 YER133W spliced 31.900373 107.237412 69.5688925 1.84241509 0.133704 8 5 SH18960 18960 YOL127W_15_80347_81189_INTRON_14_427 intron 24.681302 104.951512 24.681302 81.27021 52.975756 1.724077163 0.13368 157 72 SH21522 21522 copy of SH3383 43.289616 122.18516 82.737388 1.917701806 0.133596 164 91 SH7263 7263 snR65 91-100 + 3' 91 24.155446 77.821736 50.988591 1.707473011 0.13357 46 57 SH2966 2966 Ser1 tRNA 61 75 179.794111 300.553814 240.1739625 2.380525923 0.133547 150 92 SH10645 10645 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 111 133 25.261242 85.167916 55.214579 1.742053765 0.133531 176 46 SH3289 3289 Thr2 tRNA 46 61 31.195412 106.305784 68.750598 1.83727648 0.133492 54 88 SH8513 8513 snR19 / U1 RNA U1 61 82 25.877302 89.290674 57.583988 1.760301739 0.13349 185 9 SH11417 11417 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3971 3986 88.28143 181.115783 134.6986065 2.129363103 0.13345 5 29 SH13781 13781 MT COB intronic 26.038701 115.428217 26.038701 90.389516 58.2141085 1.765028251 0.133448 7 40 SH17667 17667 YKL006C-A_11_430270_429836_INTRON_37_177 intron 30.230112 133.90711 30.230112 104.676998 67.453555 1.829004843 0.133447 31 103 SH17578 17578 YJL191W_10_73786_74610_INTRON_11_418 intron 24.360507 102.53426 24.360507 79.173753 51.76713 1.714054088 0.133418 177 2 SH19250 19250 YPL129W_16_305297_306136_INTRON_10_114 intron 25.967749 114.878174 25.967749 89.910425 57.939087 1.762971647 0.133415 66 73 SH20642 20642 YHR203C spliced 1290.450992 1639.294899 1464.872946 3.165799958 0.133385 141 85 SH13423 13423 MT COX1 intronic 28.111768 127.724074 28.111768 100.612306 64.362037 1.808629781 0.133375 22 53 SH7599 7599 snR189 snR189 66 80 45.151201 124.63442 84.8928105 1.928870912 0.133347 18 77 SH2306 2306 Phe2 3' flank 30.78295 105.696314 68.239632 1.834036676 0.13334 163 44 SH8993 8993 snR17a / U3a U3a 251 266 28.472723 101.405696 64.9392095 1.812506998 0.133281 6 103 SH1235 1235 Ile1 3' flank 26.792882 94.692037 60.7424595 1.783492373 0.133262 30 65 SH14394 14394 MT 21S rRNA 21S rRNA3 25.101882 108.228799 25.101882 84.126917 54.6143995 1.737307163 0.13326 14 12 SH17332 17332 YIL018W_9_316766_317930_INTRON_5_404 exon/intron 25.598277 112.034053 25.598277 87.435776 56.5170265 1.752179304 0.133239 100 46 SH15867 15867 YDL079C_4_314747_312950_INTRON_413_704 intron 926.925002 2145.609461 926.925002 1219.684459 1073.304731 3.030723043 0.133232 73 9 SH10528 10528 RUF8 RUF8 566 583 24.946731 83.083477 54.015104 1.732515217 0.133227 102 99 SH13607 13607 MT ATP8/AAP1 ATP8 / 3' 26.572428 119.286855 26.572428 93.714427 60.1434275 1.779188174 0.133179 9 56 SH6598 6598 snR47 96-99 + 3' 96 84.436987 176.079619 130.258303 2.114805416 0.133162 62 16 SH2943 2943 Ser1 5' flank 26.213494 91.613256 58.913375 1.770213903 0.133123 16 93 SH13008 13008 MT COX1 COX1ai2 29.270048 131.186354 29.270048 102.916306 66.093177 1.820156628 0.133083 82 85 SH21427 21427 Tyr1_2 spliced 109.093257 208.865796 158.9795265 2.201341199 0.133069 124 12 SH4418 4418 telomerase RNA telomerase 1126 1142 26.886912 95.128707 61.0078095 1.785385432 0.133042 42 79 SH3329 3329 Thr3 5' flank - tRNA8 8 26.589902 93.809336 60.199619 1.779593743 0.132948 90 25 SH3409 3409 Thr4 3' flank 24.53961 80.397928 52.468769 1.719900875 0.132885 170 57 SH16976 16976 YGR034W_7_555923_556666_INTRON_20_496 intron 98.715993 292.788975 98.715993 195.072982 146.8944875 2.167005498 0.132885 27 46 SH8135 8135 snoRNA cluster 3; snR41/intergenic 24.995344 107.437044 24.995344 83.4417 54.218522 1.734147675 0.132871 165 4 SH7791 7791 snoRNA cluster1 snR75 32.956653 140.627955 32.956653 108.671302 70.8139775 1.850118989 0.132849 113 64 SH18528 18528 YMR225C_13_721402_720959_INTRON_59_205 intron/exon 26.791869 120.5104 26.791869 94.718531 60.7552 1.783583455 0.132845 23 85 SH3506 3506 Tyr1 tRNA 71 83 33.217826 109.011028 71.114427 1.851957715 0.132843 183 102 SH20255 20255 YDR381W spliced 26.602463 93.873194 60.2378285 1.779869308 0.132842 75 45 SH5702 5702 snR34 snR34 431 448 27.578714 98.249366 62.91404 1.798747574 0.132826 7 31 SH9533 9533 RUF3 RUF3 51 69 25.90048 89.512259 57.7063695 1.761223752 0.132785 119 17 SH15113 15113 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF3 exon3 26.483516 118.831308 26.483516 93.347792 59.915654 1.777540304 0.132776 101 88 SH12142 12142 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7596 7614 29.003756 102.435103 65.7194295 1.817693785 0.13276 9 25 SH14652 14652 MT 21S rRNA 21S rRNA4 25.949751 114.798487 25.949751 89.848736 57.8992435 1.762672889 0.132759 11 77 SH2198 2198 Met2 3' flank 25.109836 84.225293 54.6675645 1.737729726 0.132754 80 92 SH15128 15128 MT tRNA Phe tRNA 27.786975 125.98179 27.786975 99.194815 63.490895 1.802711449 0.132739 19 104 SH4412 4412 telomerase RNA telomerase 1096 1113 24.515718 80.252905 52.3843115 1.71920124 0.132732 33 49 SH14413 14413 MT 21S rRNA 21S rRNA3 45.876562 170.488006 45.876562 125.611444 85.744003 1.933203755 0.132671 160 40 SH8975 8975 snR17a / U3a U3a 161 178 28.490294 101.473444 64.981869 1.812792198 0.132641 186 77 SH8329 8329 snoRNA cluster4 intergenic/snR53 23.750111 98.117473 23.750111 75.367362 49.5587365 1.695120226 0.132638 3 55 SH11408 11408 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3926 3941 27.806649 99.292298 63.5494735 1.803111957 0.132627 173 59 SH21562 21562 copy of SH4992 32.500306 108.087816 70.294061 1.846918634 0.132591 87 30 SH12093 12093 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7351 7376 24.505171 80.196036 52.3506035 1.718921693 0.132579 108 2 SH7134 7134 snR63 snR63 176 192 26.51556 93.505396 60.010478 1.778227086 0.132574 199 62 SH8627 8627 snR19 / U1 RNA U1 631 643 1970.710959 2393.360837 2182.035898 3.338861891 0.132559 58 95 SH16145 16145 YDR092W_4_629869_630598_INTRON_31_298 intron 26.402216 118.367871 26.402216 92.965655 59.6839355 1.775857452 0.132546 13 87 SH485 485 Asp2 5' flank - tRNA2 5' flank 2 24.640518 81.10423 52.872374 1.723228811 0.132443 209 22 SH5143 5143 snR11 3' 47.488007 127.76164 87.6248235 1.942627156 0.132388 204 26 SH19914 19914 YAL003W spliced 27.72448 98.94038 63.33243 1.801626152 0.132385 208 37 SH15944 15944 YDL125C_4_239605_239018_INTRON_98_208 intron 26.487202 118.880421 26.487202 93.393219 59.9402105 1.777718264 0.13238 200 62 SH1806 1806 Leu8 tRNA-intron/exon 56 72 26.379644 92.828241 59.6039425 1.775274987 0.132353 51 104 SH6280 6280 snR42 snR42 181 197 1171.398732 1504.00679 1337.702761 3.126359623 0.132339 67 72 SH4894 4894 snR8 3' 25.599402 87.525192 56.562297 1.752527038 0.132326 183 56 SH11685 11685 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5311 5331 261.055068 405.416838 333.235953 2.522751852 0.132294 28 88 SH17381 17381 YIL052C_9_257061_256224_INTRON_38_509 intron/exon 34.001755 143.051936 34.001755 110.050181 72.025968 1.857489104 0.132279 112 4 SH6911 6911 snR58 5' 25.836801 89.127867 57.482334 1.759534394 0.132277 69 30 SH8583 8583 snR19 / U1 RNA U1 411 426 37.77971 114.922653 76.3511815 1.882815762 0.132241 150 74 SH6065 6065 snR37 snR37 241 257 25.004516 83.558697 54.2816065 1.734652692 0.132239 188 76 SH14354 14354 MT ORF9 and ORF10 (hypothetical) 5' 25.561068 111.842646 25.561068 87.281578 56.421323 1.751443266 0.13218 31 48 SH14266 14266 MT VAR1 includes 5’ processing site VAR1 26.534328 119.158456 26.534328 93.624128 60.079228 1.778724343 0.132097 176 25 SH11296 11296 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3366 3387 24.681004 81.402925 53.0419645 1.724619601 0.132097 19 63 SH15448 15448 YBL087C_2_60732_59815_INTRON_43_546 intron 26.334465 117.877982 26.334465 92.543517 59.438991 1.774071428 0.132073 20 10 SH8860 8860 LSR1 / U2 RNA U2 941 955 47.412284 127.68606 87.549172 1.942252043 0.132018 175 41 SH8018 8018 snoRNA cluster 2 snR55 88.640844 269.390767 88.640844 181.749923 135.1953835 2.130961862 0.131993 170 90 SH18372 18372 YMR079W_13_424988_426058_INTRON_10_165 intron 24.703229 105.269328 24.703229 81.566099 53.134664 1.725377939 0.131919 66 24 SH7574 7574 snR189 5' 25.966202 90.040569 58.0033855 1.763453343 0.131891 110 100 SH4097 4097 SRP RNA SRP RNA 376 390 30.055153 104.441514 67.2483335 1.827681526 0.131877 190 40 SH6273 6273 snR42 snR42 146 165 24.073074 77.42457 50.748822 1.705425966 0.13187 5 5 SH19511 19511 ACT1 24.647227 81.20001 52.9236185 1.72364953 0.13184 139 72 SH4647 4647 snR3 snR3 151 168 30.034768 104.406569 67.2206685 1.827502827 0.131828 81 67 SH11576 11576 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4766 4783 41.141295 119.446572 80.2939335 1.904682734 0.131816 187 8 SH20056 20056 YBR220C spliced 24.23832 78.511289 51.3748045 1.710750182 0.131747 34 94 SH16012 16012 YDL137W_4_216158_217074_INTRON_1_332 intron 27.646502 125.293085 27.646502 98.646583 63.1465425 1.800349576 0.131639 144 87 SH8761 8761 LSR1 / U2 RNA U2 446 461 594.565701 825.249993 709.907847 2.851201977 0.131568 182 74 SH20523 20523 YGR118W spliced 27.778641 99.250052 63.5143465 1.802871834 0.131546 143 55 SH4050 4050 SRP RNA SRP RNA 141 155 30.88224 105.981451 68.4318455 1.835258252 0.13149 118 45 SH8262 8262 snoRNA cluster4 5'/snR67 36.41429 148.648266 36.41429 113.233976 74.824133 1.874041693 0.131489 125 45 SH14439 14439 MT 21S rRNA 21S rRNA3 33.6125 142.205311 33.6125 109.592811 71.6026555 1.854929129 0.131485 43 73 SH3533 3533 Tyr2 5' flank 24.571135 80.725983 52.648559 1.721386489 0.13147 69 12 SH9092 9092 snR14 / U4 RNA U4 76 92 31.218794 106.442232 68.830513 1.837781006 0.131451 50 69 SH11602 11602 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4896 4916 149.626954 261.908618 205.767786 2.313377385 0.131437 106 23 SH10646 10646 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 116 135 42.353538 121.081913 81.7177255 1.91231627 0.131299 106 30 SH5022 5022 snR10 snR10 141 153 36.886428 113.847548 75.366988 1.877181159 0.131296 107 6 SH3473 3473 Tyr1 5' flank 24.537902 80.524012 52.530957 1.720415313 0.131253 42 32 SH16263 16263 YDR424C_4_1319830_1319376_INTRON_26_121 intron 25.465673 111.193209 25.465673 86.727536 56.0966045 1.748936574 0.131243 190 23 SH8115 8115 snoRNA cluster 3; 5' 25.914425 114.667122 25.914425 89.752697 57.833561 1.762179934 0.131199 164 29 SH1166 1166 His1 tRNA 51 66 1790.769981 2200.604015 1995.686998 3.300092428 0.131186 101 92 SH9402 9402 RUF1 3' 34.148664 110.299233 72.2239485 1.858681228 0.131126 140 90 SH8183 8183 snoRNA cluster 3; snR70 121.485788 345.912176 121.485788 225.426388 173.456088 2.239189547 0.131096 77 41 SH10004 10004 RUF5-1 3' 25.586041 87.563452 56.5747465 1.752622617 0.130903 25 89 SH3018 3018 Ser2 tRNA 51 63 33.493349 109.470193 71.481771 1.854195304 0.130898 9 72 SH2921 2921 Pro8 3' flank 25.109271 84.385535 54.747403 1.738363523 0.130894 96 7 SH19479 19479 ADH1 53.581591 135.821187 94.701389 1.976356349 0.130883 120 5 SH17122 17122 YHR010W_8_126513_127484_INTRON_32_592 intron 26.891784 121.204322 26.891784 95.312538 61.102161 1.78605657 0.130873 201 4 SH1308 1308 Ile3 5' flank 24.074428 77.518905 50.7966665 1.705835213 0.130815 157 86 SH15986 15986 YDL136W_4_217600_218367_INTRON_4_408 intron 31.886303 138.255262 31.886303 107.368959 69.627631 1.842781619 0.130808 180 66 SH16032 16032 YDL191W_4_117665_118518_INTRON_4_494 intron 36.138277 148.056338 36.138277 112.918061 74.528169 1.872320452 0.130791 167 97 SH1939 1939 Lys1 3' flank 27.24197 96.89413 62.06805 1.792868101 0.130739 173 72 SH4096 4096 SRP RNA SRP RNA 371 383 38.074256 115.400849 76.7375525 1.885007944 0.130735 129 45 SH20283 20283 YDR471W spliced 44.374261 123.790819 84.08254 1.924705823 0.130717 85 29 SH6946 6946 snR58 81-96 + 3' 91 26.210885 91.822439 59.016662 1.770974642 0.13071 55 17 SH4284 4284 telomerase RNA telomerase 456 470 35.338971 111.888981 73.613976 1.866960275 0.130663 95 46 SH9257 9257 snR6 / U6 RNA 3' 30.097863 104.588097 67.34298 1.82829233 0.130657 70 84 SH6147 6147 snR39B snR39B 76 90 86.266374 178.739208 132.502791 2.122225026 0.130637 176 27 SH4014 4014 SRP RNA 5' 24.853213 82.684533 53.768873 1.730530934 0.130581 143 73 SH5062 5062 snR11 5' 32.886534 108.70179 70.794162 1.849997445 0.130528 44 43 SH14390 14390 MT 21S rRNA 5' 24.819874 106.28584 24.819874 82.465966 53.64292 1.72951241 0.130521 42 43 SH19968 19968 YBL072C spliced 136.097447 244.539544 190.3184955 2.279480996 0.130471 107 52 SH2881 2881 Pro8 5' flank 602.084436 834.998141 718.5412885 2.856451728 0.13045 175 60 SH15318 15318 YAL003W_1_142172_143158_INTRON_81_446 intron 141.724001 392.548068 141.724001 251.824067 196.774034 2.293967789 0.130442 76 17 SH11344 11344 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3606 3619 217.092038 349.269673 283.1808555 2.452063889 0.130426 21 11 SH8361 8361 snoRNA cluster4 3' 25.627763 112.518001 25.627763 87.890238 56.7590005 1.754034739 0.130385 84 45 SH12804 12804 MT COX1 COX1ai1 25.507018 111.588607 25.507018 87.081589 56.2943035 1.75046445 0.130371 58 32 SH14772 14772 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu 25.387317 110.673566 25.387317 86.286249 55.836783 1.746920389 0.130327 198 99 SH1505 1505 Leu3 5' flank - tRNA12 12 294.070266 448.644548 371.357407 2.569792091 0.13031 54 77 SH21005 21005 YML094W spliced 26.418304 93.238859 59.8285815 1.776908706 0.130293 20 57 SH3902 3902 RNase MRP 5' 26.125025 91.275458 58.7002415 1.768639888 0.130265 170 38 SH3763 3763 Val4 tRNA 41 53 41.610085 120.153487 80.881786 1.907850733 0.130262 180 67 SH8429 8429 snoRNA cluster 5 intergenic 26.034031 115.690628 26.034031 90.656597 58.345314 1.766005981 0.13023 121 73 SH373 373 Asn1 5' flank 25.666558 88.165376 56.915967 1.755234119 0.130229 32 41 SH9567 9567 RUF3 RUF3 221 238 24.513781 80.452906 52.4833435 1.720021494 0.1302 120 90 SH3238 3238 Thr1 tRNA 46 62 28.337553 101.315429 64.826491 1.811752514 0.130194 106 60 SH21652 21652 copy of SH8772 25.191582 84.998711 55.0951465 1.741113342 0.130193 61 89 SH18058 18058 YLR333C_12_796335_795573_INTRON_1_423 intron 27.198596 122.939656 27.198596 96.74106 61.969828 1.792180291 0.130187 16 74 SH14747 14747 MT ORF11; tRNA Leu; tRNA Gln 5' / orf11 24.967992 107.461472 24.967992 83.49348 54.230736 1.734245499 0.130165 51 46 SH4449 4449 telomerase RNA telomerase 1281 1298 26.597494 94.05039 60.323942 1.780489714 0.130137 96 35 SH13457 13457 MT COX1 intronic 26.10701 116.278349 26.10701 91.171339 58.6391745 1.768187848 0.130059 145 57 SH20003 20003 YBR078W spliced 28.000153 100.368732 64.1844425 1.807429773 0.130056 62 29 SH9633 9633 RUF4 5' 1686.044371 2087.359258 1886.701815 3.275703267 0.130038 102 97 SH5290 5290 snR30 snR30 301 317 24.866951 82.825248 53.8460995 1.731154249 0.130022 159 98 SH17723 17723 YKL156W_11_158616_159214_INTRON_4_353 exon/intron 26.526426 119.26835 26.526426 93.741924 60.134175 1.779121357 0.130014 143 54 SH856 856 Glu2 tRNA 46 58 49.402077 130.422873 89.912475 1.953819953 0.129996 192 21 SH8603 8603 snR19 / U1 RNA U1 511 528 47.539634 127.988034 87.763834 1.943315587 0.129992 58 84 SH3988 3988 RNase MRP 3' 25.967101 90.22557 58.0963355 1.76414874 0.129957 56 58 SH5633 5633 snR34 snR34 86 105 26.408261 93.219669 59.813965 1.776802592 0.129943 184 15 SH17721 17721 YKL156W_11_158616_159214_INTRON_4_353 5' exon 34.244096 143.730629 34.244096 110.486533 72.3653145 1.859530454 0.129933 48 33 SH8609 8609 snR19 / U1 RNA U1 541 557 54.23028 136.72938 95.47983 1.979911637 0.129916 93 75 SH10978 10978 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1776 1794 991.820192 1298.225739 1145.022966 3.058814197 0.129916 205 82 SH13318 13318 MT COX1 COX1-ai5a 24.341403 102.68321 24.341403 79.341807 51.841605 1.714678439 0.129877 178 30 SH5611 5611 snR34 5' 27.43496 97.832389 62.6336745 1.796807891 0.129828 195 21 SH955 955 Gly1 tRNA 26 40 41.097699 119.510224 80.3039615 1.90473697 0.129805 16 29 SH3911 3911 RNase MRP 5' 24.469687 80.196199 52.332943 1.718775158 0.129781 176 71 SH5746 5746 snR35 5' 27.993496 100.361726 64.177611 1.807383547 0.129762 18 28 SH194 194 Arg2 3' flank 24.266096 78.85947 51.562783 1.71233635 0.129727 214 98 SH11619 11619 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4981 4994 24013.76866 21556.8398 22785.30423 4.357654832 0.12972 6 46 SH1365 1365 Ile3 3' flank 23.939591 76.749823 50.344707 1.701953818 0.129675 30 20 SH8586 8586 snR19 / U1 RNA U1 426 441 307.075859 465.745304 386.4105815 2.587049011 0.129602 113 70 SH5744 5744 snR35 5' 26.8922 95.410458 61.151329 1.7864059 0.129589 45 50 SH1604 1604 Leu4 3' flank 26.804451 95.03098 60.9177155 1.784743608 0.129403 154 104 SH10201 10201 RUF6 RUF6 851 873 24.971792 83.588655 54.2802235 1.734641627 0.12937 16 33 SH7967 7967 snoRNA cluster 2 5' 43.297745 164.757515 43.297745 122.45977 82.8787575 1.918443232 0.129357 164 32 SH12802 12802 MT COX1 COX1ai1 24.648136 105.066332 24.648136 81.418196 53.033166 1.724547555 0.129346 155 21 SH20395 20395 YFL039C spliced 36.586176 113.577977 75.0820765 1.875536275 0.129257 197 8 SH12257 12257 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 219.101764 570.223622 219.101764 352.121858 285.611811 2.455776163 0.129253 203 83 SH8248 8248 snoRNA cluster4 5' 24.4145 103.291242 24.4145 79.876742 52.145621 1.717217844 0.12924 45 68 SH2848 2848 Pro7 tRNA-intron 46 62 77.325798 167.042922 122.18436 2.087015618 0.129165 120 65 SH10243 10243 RUF6 3' 24.740694 82.055665 53.3981795 1.727526451 0.129123 5 104 SH1121 1121 Gly4 3' flank 23.890432 76.491954 50.191193 1.700627519 0.129117 58 51 SH14969 14969 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.067145 130.82228 29.067145 102.755135 65.91114 1.818958823 0.129069 47 6 SH7199 7199 snR64 snR64 61 78 35.883743 112.68587 74.2848065 1.870899996 0.129044 187 7 SH9681 9681 RUF4 RUF4 181 201 24.288453 79.063949 51.676201 1.713290579 0.129028 38 41 SH10438 10438 RUF8 RUF8 116 132 34.9598 111.4832 73.2215 1.864638622 0.129002 208 12 SH5315 5315 snR30 snR30 426 443 25.422457 86.640542 56.0314995 1.748432245 0.128976 200 85 SH2646 2646 Pro3 3' flank 24.468002 80.254168 52.361085 1.719008637 0.128957 113 57 SH5508 5508 snR32 3' 24.588296 81.056226 52.822261 1.722816987 0.128915 55 85 SH12223 12223 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.326444 102.650366 24.326444 79.323922 51.825183 1.714540844 0.128906 203 85 SH20661 20661 YIL052C spliced 188.728173 313.007067 250.86762 2.39944461 0.12888 100 45 SH1564 1564 Leu4 5' flank - tRNA9 9 26.289268 92.537024 59.413146 1.773882549 0.128859 19 29 SH15286 15286 MT 9S rRNA 9S 25.285416 110.025392 25.285416 85.739976 55.512696 1.74439232 0.128833 169 2 SH13033 13033 MT COX1 COX1ai2 24.92331 107.23167 24.92331 83.30836 54.115835 1.733324364 0.128831 140 70 SH3168 3168 Ser5 5' flank 26.034941 90.794381 58.414661 1.766521861 0.128816 76 62 SH5105 5105 snR11 snR11 126 145 26.037853 90.82218 58.4300165 1.766636009 0.128731 197 90 SH1922 1922 Lys1 66-72 + 3' flank 66 82 26.112313 91.333249 58.722781 1.768806615 0.128718 5 37 SH10169 10169 RUF6 RUF6 691 703 32.46116 108.239344 70.350252 1.847265657 0.128709 127 8 SH1094 1094 Gly4 5' flank 25.046728 84.156318 54.601523 1.737204757 0.128682 196 4 SH8347 8347 snoRNA cluster4 snR53 24.248424 102.078811 24.248424 78.830387 51.5394055 1.712139405 0.128674 107 102 SH6296 6296 snR42 snR42 261 278 29.427806 103.45383 66.440818 1.822434971 0.128653 150 12 SH2299 2299 Phe2 91-92 + 3' flank 91 24.934119 83.401453 54.167786 1.733741085 0.1286 110 102 SH20818 20818 YKL190W spliced 28.277169 101.288643 64.782906 1.811460425 0.128555 164 89 SH7674 7674 snoRNA cluster1 snR78 24.302564 102.5028 24.302564 79.200236 51.7514 1.713922103 0.128503 93 83 SH12021 12021 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6991 7008 58.80941 142.791869 100.8006395 2.003463287 0.128447 123 69 SH17082 17082 YHL001W_8_104270_105084_INTRON_130_527 5' exon 26.044262 115.937001 26.044262 90.892739 58.4685005 1.766921956 0.128445 168 19 SH18854 18854 YNR053C_14_723108_721117_INTRON_811_1341 intron 23.554327 97.053447 23.554327 74.49912 49.0267235 1.69043287 0.128443 54 7 SH7014 7014 snR60 3' 1585.380066 1977.908162 1781.644114 3.250820957 0.128419 65 96 SH18080 18080 YLR344W_12_819312_820142_INTRON_20_466 intron 26.91494 121.518062 26.91494 95.603122 61.259031 1.787170123 0.12838 48 94 SH3151 3151 Ser4 3' flank 24.005181 77.267274 50.6362275 1.704461342 0.128364 39 57 SH3400 3400 Thr4 3' flank 23.016383 71.289854 47.1531185 1.67351042 0.128324 48 66 SH5682 5682 snR34 snR34 331 347 24.889805 83.131269 54.010537 1.732478495 0.128269 123 4 SH8041 8041 snoRNA cluster 2 intergenic 26.850577 121.174779 26.850577 95.324202 61.0873895 1.785951566 0.128247 45 34 SH6209 6209 snR40 3' 23.089445 71.729741 47.409593 1.675866227 0.12823 19 90 SH6954 6954 snR58 3' 24.003811 77.269703 50.636757 1.704465884 0.128224 174 32 SH17274 17274 YHR141C_8_382752_381991_INTRON_5_445 5' exon 31.424915 137.311098 31.424915 106.886183 69.155549 1.839827033 0.12822 69 99 SH870 870 Glu2 3' flank 26.26835 92.457388 59.362869 1.773514882 0.128177 213 96 SH1529 1529 Leu3 3' flank 24.434076 80.097079 52.2655775 1.718215753 0.128153 94 80 SH16930 16930 YGR001C_7_498029_497128_INTRON_36_97 3' exon 32.298374 139.353821 32.298374 108.055447 70.1769105 1.846194245 0.128118 180 53 SH7343 7343 snR68 5' 24.788613 82.468637 53.628625 1.729396662 0.128058 13 93 SH2682 2682 Pro4 tRNA 76 90 28.835127 102.374972 65.6050495 1.816937268 0.128026 120 98 SH1429 1429 Leu2 5' flank 25.61711 88.032979 56.8250445 1.754539784 0.128009 200 26 SH17109 17109 YHR001W-A_8_107819_108115_INTRON_7_69 intron 26.111857 116.508635 26.111857 91.396778 58.7543175 1.769039786 0.128007 159 4 SH8345 8345 snoRNA cluster4 snR53 24.766828 106.099726 24.766828 82.332898 53.549863 1.728758364 0.127936 204 6 SH21721 21721 copy of SH11711 18979.07535 17546.20652 18262.64094 4.26156358 0.127923 15 81 SH4292 4292 telomerase RNA telomerase 496 517 24.312633 79.315623 51.814128 1.714448194 0.127911 118 87 SH12287 12287 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.6966 156.461908 39.6966 117.765308 78.730954 1.896145514 0.127892 95 58 SH20445 20445 YGL103W spliced 29.478106 103.589919 66.5340125 1.823043715 0.127886 121 26 SH13623 13623 MT ATP6 ATP6 26.246486 117.583136 26.246486 92.33665 59.291568 1.772992936 0.12786 212 87 SH4416 4416 telomerase RNA telomerase 1116 1132 26.460281 93.605629 60.032955 1.778389721 0.127847 64 17 SH17624 17624 YJR094W-A_10_608000_608553_INTRON_3_277 intron 27.529834 124.946607 27.529834 98.416773 62.9733035 1.799156476 0.127799 210 34 SH20301 20301 YEL012W spliced 138.687116 248.297258 193.492187 2.286663433 0.127794 194 40 SH8491 8491 snR19 / U1 RNA 5' 24.121354 78.072146 51.09675 1.708393278 0.127774 76 68 SH5373 5373 snR31 5' 46.507996 126.764544 86.63627 1.937699746 0.127756 141 64 SH16672 16672 YFR032C-A_6_223758_223245_INTRON_1_331 intron 24.405521 103.348947 24.405521 79.943426 52.1744735 1.717458075 0.127732 142 64 SH8039 8039 snoRNA cluster 2 intergenic 26.580482 119.734565 26.580482 94.154083 60.3672825 1.780801626 0.127702 51 97 SH21758 21758 copy of SH13183 33.961048 110.242865 72.1019565 1.85794705 0.127682 88 91 SH20878 20878 YLR185W spliced 25.865455 89.749169 57.807312 1.761982775 0.127623 160 81 SH3345 3345 Thr3 71-72 + 3' flank 71 24.925109 83.427544 54.1763265 1.733809554 0.127604 83 66 SH13598 13598 MT ATP8/AAP1 ATP8 23.28988 95.266763 23.28988 72.976883 48.1333815 1.682446373 0.127518 98 77 SH4506 4506 U3b (snR17b) U3b 86 103 39.69805 117.790312 78.744181 1.89621847 0.127503 174 56 SH12058 12058 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7176 7191 32.822871 108.780496 70.8016835 1.850043584 0.127448 129 90 SH14433 14433 MT 21S rRNA 21S rRNA3 514.373922 1242.385422 514.373922 729.0115 621.692711 2.793575776 0.127389 157 67 SH4139 4139 SRP RNA SRP RNA 586 602 393.336437 577.405307 485.370872 2.68607371 0.127387 196 73 SH2360 2360 Phe3 3' flank 27.718368 99.301525 63.5099465 1.802841747 0.127387 40 28 SH123 123 Arg1 5' flank - tRNA8 5' flank 8 25.634464 88.207238 56.920851 1.755271384 0.127375 57 54 SH6050 6050 snR37 snR37 166 188 26.844061 95.363461 61.103761 1.786067942 0.127331 181 88 SH4636 4636 snR3 snR3 96 112 57.042072 140.57719 98.809631 1.994799277 0.127295 184 32 SH14135 14135 MT COB intronic 24.079649 100.91887 24.079649 77.839221 50.959435 1.707224604 0.127292 207 29 SH19615 19615 RNA14 1.1 25.650429 88.323368 56.9868985 1.755775021 0.127282 30 11 SH14619 14619 MT 21S rRNA Sce1 endonuc 26.354734 118.496138 26.354734 93.141404 59.748069 1.776323874 0.127266 79 67 SH8133 8133 snoRNA cluster 3; snR41 26.438876 118.99449 26.438876 93.555614 59.997245 1.778131309 0.127224 134 47 SH17270 17270 YHR123W_8_354817_356083_INTRON_51_141 intron 25.802828 114.164888 25.802828 89.36206 57.582444 1.760290094 0.127205 184 51 SH20511 20511 YGR029W spliced 31.552809 107.111704 69.3322565 1.840935335 0.127179 28 32 SH13859 13859 MT COB Cytbi2 24.983673 107.845584 24.983673 83.861911 54.422792 1.735780818 0.127168 183 60 SH2481 2481 Phe5 3' flank 32.373724 108.206862 70.290293 1.846895354 0.127126 183 97 SH8825 8825 LSR1 / U2 RNA U2 766 787 24.617163 81.401917 53.00954 1.724354036 0.127111 33 42 SH21675 21675 copy of SH9838 24.399332 79.955972 52.177652 1.717484532 0.127093 96 63 SH4621 4621 snR3 snR3 21 37 307.839601 467.494737 387.667169 2.588459023 0.127068 168 100 SH2055 2055 Lys4 5' flank 23.290912 73.016879 48.1538955 1.682631426 0.127059 88 78 SH7937 7937 snoRNA cluster1 3' 22.48497 89.790502 22.48497 68.305532 45.395251 1.657010422 0.127037 107 97 SH4861 4861 snR8 snR8 86 100 26.247807 92.425252 59.3365295 1.773322142 0.127021 212 89 SH7921 7921 snoRNA cluster1 snR72 24.49994 104.131378 24.49994 80.631438 52.565689 1.720702361 0.126991 49 61 SH2611 2611 Pro3 tRNA 6 22 395.41295 580.204261 487.8086055 2.688249457 0.126961 32 78 SH1868 1868 Leu9 tRNA 81 96 30.055252 104.7153 67.385276 1.828565012 0.126948 123 76 SH3846 3846 RNaseP RNaseP 196 213 27.889781 100.112804 64.0012925 1.806188745 0.126947 8 42 SH2554 2554 Pro2 tRNA 6 22 396.144207 581.142243 488.643225 2.688991882 0.126938 184 47 SH3347 3347 Thr3 3' flank 23.438572 73.914527 48.6765495 1.687319785 0.126919 203 60 SH12510 12510 MT_ORF6 + ORF7 (hypothetical) 5' 24.272773 102.408983 24.272773 79.13621 51.7044915 1.713528271 0.126909 189 58 SH9012 9012 snR17a / U3a U3a 346 362 25.124923 84.845337 54.98513 1.740245256 0.126891 110 71 SH11565 11565 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4711 4726 911.674057 1206.860028 1059.267043 3.02500546 0.126864 123 12 SH8114 8114 snoRNA cluster 3; 5' 24.883092 107.091836 24.883092 83.208744 54.045918 1.732762898 0.126858 198 73 SH8938 8938 snR17a / U3a 5' 23.857509 76.465356 50.1614325 1.70036993 0.126849 139 89 SH18844 18844 YNL312W_14_48286_49215_INTRON_8_115 intron 281.81286 714.584759 281.81286 433.771899 357.7923795 2.553631086 0.126755 114 41 SH4159 4159 SRP RNA 3' 28.118213 101.08497 64.6015915 1.810243217 0.126702 8 20 SH5634 5634 snR34 snR34 91 108 27.985001 100.567837 64.276419 1.808051673 0.126658 140 54 SH3311 3311 Thr3 5' flank 26.600578 94.323841 60.4622095 1.781484014 0.126624 13 32 SH19117 19117 YPL031C_16_493033_492014_INTRON_18_119 intron 24.987593 107.925187 24.987593 83.937594 54.4625935 1.736098319 0.126609 163 64 SH14516 14516 MT 21S rRNA 21S rRNA3 28.453696 129.184941 28.453696 101.731245 65.0924705 1.813530755 0.126574 25 20 SH1818 1818 Leu8 3' flank 23.783289 76.034668 49.9089785 1.698178681 0.126546 30 30 SH8977 8977 snR17a / U3a U3a 171 188 29.018665 102.801698 65.9101815 1.818952508 0.126544 53 86 SH14220 14220 MT ATP9 ATP9 26.273847 117.927069 26.273847 92.653222 59.4635345 1.77425072 0.126515 91 53 SH1588 1588 Leu4 111-114 + 3' flank 111 25.00854 84.090517 54.5495285 1.736791001 0.126485 182 102 SH7575 7575 snR189 5' 24.597512 81.324691 52.9611015 1.723957009 0.126477 208 80 SH10012 10012 RUF6 5' 26.179305 92.008242 59.0937735 1.771541723 0.126436 11 61 SH1525 1525 Leu3 tRNA 96 112 68.520299 155.645108 112.0827035 2.049538598 0.126381 82 93 SH11119 11119 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2481 2497 29.399382 103.525995 66.4626885 1.822577905 0.126371 44 50 SH13594 13594 MT ATP8/AAP1 5' 24.661415 105.423062 24.661415 81.761647 53.211531 1.726005755 0.126362 94 53 SH8060 8060 snoRNA cluster 2 intergenic/snR61 25.977399 115.610728 25.977399 90.633329 58.305364 1.765708511 0.126319 121 31 SH1745 1745 Leu7 tRNA 21 33 258.776225 404.003305 331.389765 2.520339091 0.126313 188 95 SH5254 5254 snR30 snR30 121 133 36.452814 113.571844 75.012329 1.87513265 0.126292 46 87 SH13847 13847 MT COB Cytbi2 27.020684 122.256512 27.020684 96.235828 61.628256 1.789779878 0.126289 130 45 SH10489 10489 RUF8 RUF8 371 389 27.095527 96.572866 61.8341965 1.791228722 0.126289 76 51 SH20398 20398 YFR024C-A spliced 25.632811 88.299158 56.9659845 1.755615607 0.126237 90 51 SH21631 21631 copy of SH7931 28.927869 102.65192 65.7898945 1.81815919 0.126153 101 78 SH7520 7520 snR79 5' 24.177948 78.5764 51.377174 1.710770212 0.126142 202 83 SH6317 6317 snR42 3' 24.372633 79.859057 52.115845 1.716969784 0.12614 30 98 SH7347 7347 snR68 5' 22.461465 68.237841 45.349653 1.656573968 0.126068 181 95 SH9020 9020 snR17a / U3a U3a 386 407 28.74403 102.311874 65.527952 1.816426595 0.126019 114 90 SH817 817 Glu1 3' flank 25.997611 90.801856 58.3997335 1.766410865 0.125994 147 21 SH3305 3305 Thr2 3' flank 24.801906 82.740344 53.771125 1.730549123 0.125949 81 84 SH9346 9346 RUF1 RUF1 306 322 27.814804 99.853087 63.8339455 1.805051688 0.125922 20 11 SH5331 5331 snR30 snR30 506 522 25.715314 88.886055 57.3006845 1.75815981 0.125919 184 53 SH401 401 Asn1 3' flank 22.907573 70.819177 46.863375 1.670833562 0.125913 70 79 SH7137 7137 snR63 snR63 191 210 29.950527 104.579194 67.2648605 1.827788246 0.125903 44 26 SH11351 11351 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3641 3656 910.256137 1205.979289 1058.117713 3.024533985 0.125866 102 9 SH20802 20802 YKL180W spliced 33.083887 109.205103 71.144495 1.852141301 0.125863 57 92 SH17607 17607 YJL205C-A_10_50443_50139_INTRON_33_175 intron 26.847111 121.334963 26.847111 95.487852 61.1674815 1.786520599 0.125853 172 26 SH7397 7397 snR68 3' 28.550268 101.95488 65.252574 1.814597648 0.12583 9 68 SH20643 20643 YHR203C spliced 83.191618 175.157215 129.1744165 2.111176508 0.125828 137 97 SH1886 1886 Leu9 3' flank 29.948909 104.580724 67.2648165 1.827787962 0.125821 207 39 SH4298 4298 telomerase RNA telomerase 526 545 24.464629 80.499591 52.48211 1.720011287 0.125773 197 94 SH20804 20804 YKL180W spliced 31.322541 106.877653 69.100097 1.839478657 0.125719 103 35 SH4415 4415 telomerase RNA telomerase 1111 1127 25.523665 87.61115 56.5674075 1.752566275 0.125708 75 13 SH18143 18143 YLR406C_12_931752_931062_INTRON_58_406 intron 25.392264 111.126811 25.392264 86.734547 56.0634055 1.748679475 0.125649 11 85 SH8166 8166 snoRNA cluster 3; snR70 42.143468 162.292647 42.143468 121.149179 81.6463235 1.911936633 0.125631 14 39 SH11560 11560 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4686 4699 35.785547 112.750927 74.268237 1.870803115 0.125557 178 104 SH8013 8013 snoRNA cluster 2 intergenic 26.611854 120.065614 26.611854 94.45376 60.532807 1.781990813 0.125552 126 27 SH11163 11163 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2701 2724 26.787068 95.240781 61.0139245 1.78542896 0.125548 194 65 SH7644 7644 snoRNA cluster1 5' 25.260152 110.124118 25.260152 85.863966 55.562059 1.744778331 0.125515 207 74 SH6732 6732 snR49 3' 26.16076 91.969811 59.0652855 1.771332308 0.12549 4 55 SH15887 15887 YDL082W_4_308423_309387_INTRON_5_369 intron 23.420186 96.335609 23.420186 73.915423 48.6678045 1.687241755 0.125421 6 22 SH6552 6552 snR46 3' 26.051841 91.232534 58.6421875 1.768210162 0.125363 191 57 SH21420 21420 Trp1 spliced 44.914019 124.833723 84.873871 1.92877401 0.12536 80 52 SH19701 19701 Negative Control 33.702189 110.034068 71.8681285 1.856536336 0.125351 182 13 SH615 615 Gln1 3' flank 25.591176 88.102292 56.846734 1.754705518 0.125307 17 81 SH10707 10707 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 421 437 27.346256 97.781617 62.5639365 1.796324067 0.125273 102 76 SH18496 18496 YMR194W_13_651144_651909_INTRON_17_479 intron 54.188754 190.198602 54.188754 137.009848 95.599301 1.980454717 0.125256 205 7 SH14956 14956 MT tRNA Met 3' 26.194953 117.429289 26.194953 92.234336 59.2146445 1.772429126 0.125186 131 5 SH16043 16043 YDL191W_4_117665_118518_INTRON_4_494 intron 29.194821 131.402803 29.194821 103.207982 66.2014015 1.820867184 0.125174 199 50 SH7990 7990 snoRNA cluster 2 snR57/intergenic 24.282738 102.630739 24.282738 79.348001 51.8153695 1.714458599 0.125146 95 74 SH15514 15514 YBR048W_2_332790_333771_INTRON_46_556 intron 24.843315 106.932827 24.843315 83.089512 53.9664135 1.732123557 0.125142 25 55 SH13683 13683 MT ORF 5 (hypothetical) 5' / ORF5 26.479226 119.373996 26.479226 93.89477 60.186998 1.779502682 0.125069 21 46 SH1178 1178 His1 3' flank 29.790492 104.330261 67.0603765 1.826465987 0.125027 43 10 SH21710 21710 copy of SH11290 24.573448 81.288757 52.9311025 1.72371094 0.125011 179 30 SH11419 11419 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3981 3998 66.152303 152.632128 109.3922155 2.038986418 0.125005 133 31 SH16927 16927 YGR001C_7_498029_497128_INTRON_36_97 intron 25.764382 114.067634 25.764382 89.303252 57.533817 1.759923188 0.124997 143 37 SH13851 13851 MT COB Cytbi2 24.979358 108.006039 24.979358 84.026681 54.5030195 1.736420563 0.124959 14 30 SH19903 19903 snR17B spliced 28.974092 102.804388 65.88924 1.818814498 0.124955 188 45 SH9986 9986 RUF5-1 RUF5-1 736 756 26.108061 91.661791 58.884926 1.770004134 0.124907 79 51 SH9768 9768 RUF4 RUF4 616 632 27.64002 99.140833 63.3904265 1.802023674 0.124891 163 14 SH14189 14189 MT COB Exon6 24.356227 103.213201 24.356227 79.856974 52.1066005 1.71689274 0.124865 105 49 SH14122 14122 MT COB intronic 26.1825 117.364226 26.1825 92.181726 59.182113 1.772190467 0.124833 4 41 SH4992 4992 snR10 5' - 10 -9 10 30.659988 105.959158 68.309573 1.834481571 0.124653 142 7 SH2500 2500 Pro1 5' flank - tRNA5 5 2446.12566 2910.754083 2678.439872 3.427881901 0.124558 59 51 SH14212 14212 MT ATP9 5'/ATP9 25.063989 108.707559 25.063989 84.64357 54.8537795 1.739206556 0.124493 68 32 SH19443 19443 YPR187W_16_911252_911795_INTRON_21_96 intron/exon 56.843666 196.372451 56.843666 140.528785 98.6862255 1.994256539 0.12445 51 74 SH19180 19180 YPL079W_16_406631_407534_INTRON_12_432 intron 265.481716 677.660387 265.481716 413.178671 339.3301935 2.530622505 0.124438 32 76 SH21570 21570 copy of SH5385 34.264061 110.811043 72.537552 1.860562895 0.124432 70 67 SH16587 16587 YFL034C-A_6_64931_64242_INTRON_13_333 intron 25.730663 113.856892 25.730663 89.126229 57.428446 1.759127065 0.124429 35 33 SH21508 21508 copy of SH2800 33.495545 109.816374 71.6559595 1.855252316 0.124422 155 49 SH15595 15595 YBR089C-A_2_426588_426148_INTRON_1_114 intron 24.709948 105.96423 24.709948 82.254282 53.482115 1.728208574 0.124413 188 46 SH5100 5100 snR11 snR11 101 119 26.069235 91.44414 58.7566875 1.769057304 0.12438 119 73 SH7118 7118 snR63 snR63 96 117 25.663119 88.673729 57.168424 1.75715622 0.124369 40 93 SH2546 2546 Pro2 5' flank 23.481854 74.367619 48.9247365 1.689528495 0.124357 20 82 SH2180 2180 Met2 tRNA 31 47 34.664307 111.34685 73.0055785 1.863356047 0.124355 49 96 SH10177 10177 RUF6 RUF6 731 752 25.440389 87.175285 56.307837 1.750568845 0.124326 25 73 SH12282 12282 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.400111 142.100278 33.400111 109.700167 71.550139 1.854610482 0.12428 34 45 SH21897 21897 copy of SH19002 24.234325 79.100942 51.6676335 1.71321857 0.124276 7 93 SH10223 10223 RUF6 RUF6 961 973 915.653787 1213.657737 1064.655762 3.027209209 0.124194 117 65 SH11647 11647 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5121 5141 24.974873 84.067072 54.5209725 1.736563594 0.124153 92 63 SH7205 7205 snR64 91-101 + 3' 91 27.642778 99.215388 63.429083 1.802288433 0.124094 16 15 SH6629 6629 snR48 5' 25.627977 88.464591 57.046284 1.75622736 0.124052 130 86 SH325 325 Arg5 5' flank 26.842867 95.604516 61.2236915 1.786919512 0.124042 181 31 SH10815 10815 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 961 981 32899.95727 28544.16772 30722.0625 4.487450368 0.124028 15 89 SH15297 15297 MT 9S rRNA 3' 23.532404 97.232398 23.532404 74.699994 49.116199 1.69122475 0.12401 106 47 SH20940 20940 YLR426W spliced 26.168228 92.161348 59.164788 1.772063313 0.124007 182 94 SH10843 10843 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1101 1123 445.313128 644.455613 544.8843705 2.736304351 0.123976 211 73 SH6993 6993 snR60 snR60 46 65 73.350304 162.207361 117.7788325 2.071067245 0.123927 24 75 SH13667 13667 MT ATP6 ATP6 26.967146 122.142773 26.967146 96.175627 61.5713865 1.789378933 0.123892 63 33 SH20464 20464 YGL183C spliced 30.24592 105.238548 67.742234 1.830859515 0.123891 60 29 SH3692 3692 Val3 5' flank 26.983219 96.25097 61.6170945 1.789701216 0.123853 162 86 SH9812 9812 RUF4 3' 26.851805 95.661282 61.2565435 1.787152487 0.123821 3 12 SH8558 8558 snR19 / U1 RNA U1 286 305 24.721943 82.390456 53.5561995 1.728809751 0.123768 127 98 SH19468 19468 ADH1 138.061215 248.090667 193.075941 2.28572816 0.123705 167 24 SH6648 6648 snR48 snR48 66 83 26.067048 91.493104 58.780076 1.769230143 0.123698 166 8 SH8044 8044 snoRNA cluster 2 intergenic 24.633287 105.435175 24.633287 81.801888 53.2175875 1.726055183 0.123689 200 32 SH14124 14124 MT COB intronic 24.353213 103.291986 24.353213 79.938773 52.145993 1.717220942 0.123648 154 29 SH3310 3310 Thr2 3' flank 25.23412 85.855876 55.544998 1.744644955 0.123637 75 73 SH11496 11496 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4366 4383 156.583812 272.148671 214.3662415 2.331156393 0.123635 192 38 SH10030 10030 RUF6 5' - 12 -4 12 26.338156 93.37446 59.856308 1.777109926 0.123546 108 14 SH16548 16548 YER133W_5_432491_433954_INTRON_178_702 intron 31.742751 138.297552 31.742751 107.554801 69.648776 1.842913489 0.123545 193 66 SH15476 15476 YBL091C-A_2_46858_46559_INTRON_35_122 intron 24.84214 107.063382 24.84214 83.221242 54.031691 1.73264856 0.123537 97 102 SH2452 2452 Phe5 tRNA-exon/intron 31 48 26.302357 93.137288 59.7198225 1.776118508 0.123508 182 29 SH19742 19742 Negative Control 34.462252 111.126159 72.7942055 1.86209681 0.123486 152 32 SH3909 3909 RNase MRP 5' 25.40952 87.048869 56.2291945 1.749961862 0.123421 90 87 SH5729 5729 snR34 3' 29.812548 104.461841 67.1371945 1.826963189 0.123394 83 56 SH2459 2459 Phe5 tRNA 66 80 32.404508 108.443031 70.4237695 1.847719267 0.123393 37 99 SH7940 7940 snoRNA cluster1 3' 23.959817 100.34357 23.959817 77.383753 50.671785 1.704766203 0.123275 157 24 SH3231 3231 Thr1 tRNA 11 25 174.191647 295.161242 234.6764445 2.3704695 0.123266 208 49 SH15533 15533 YBR078W_2_393082_394818_INTRON_59_388 5' exon 28.622338 129.854879 28.622338 102.232541 65.4274395 1.815759925 0.123231 29 40 SH8907 8907 LSR1 / U2 RNA 3' 22.785038 70.286966 46.536002 1.667789069 0.12323 81 87 SH21913 21913 copy of SH19566 29.680009 104.225607 66.952808 1.825768796 0.123197 206 12 SH18394 18394 YMR125W_13_517538_520445_INTRON_26_347 5' exon 25.635125 113.226086 25.635125 88.590961 57.113043 1.7567353 0.123193 131 12 SH1458 1458 Leu2 tRNA-intron/exon 61 76 145.042274 257.247786 201.14503 2.303509306 0.123056 147 96 SH9940 9940 RUF5-1 RUF5-1 506 523 24.374425 80.140137 52.257281 1.718146809 0.122923 96 13 SH20623 20623 YHR101C spliced 30.296441 105.387148 67.8417945 1.831497327 0.122905 61 37 SH6301 6301 snR42 snR42 286 303 24.770635 82.794875 53.782755 1.730643045 0.122885 178 2 SH7056 7056 snR62 snR62 71 88 34.856779 111.686352 73.2715655 1.864935471 0.122797 120 53 SH7807 7807 snoRNA cluster1 intergenic 25.467446 111.962938 25.467446 87.495492 56.481469 1.751905984 0.122783 207 34 SH1792 1792 Leu8 5' flank - tRNA3 3 26.337452 93.430925 59.8841885 1.777312169 0.122733 181 5 SH10614 10614 RUF8 3' 26.117704 91.934297 59.0260005 1.771043357 0.122719 134 68 SH10559 10559 RUF8 RUF8 721 738 24.79235 82.956694 53.874522 1.73138343 0.122709 42 34 SH15740 15740 YCR028C-A_3_173432_172942_INTRON_243_325 intron 23.219461 95.129468 23.219461 72.910007 48.064734 1.681826543 0.122691 82 67 SH5922 5922 snR36 snR36 66 78 26.83097 95.653154 61.242062 1.787049805 0.122679 85 60 SH18087 18087 YLR344W_12_819312_820142_INTRON_20_466 3' exon 30.612603 135.597533 30.612603 105.98493 68.2987665 1.83441286 0.122646 92 16 SH18618 18618 YNL069C_14_494998_493953_INTRON_29_477 3' exon 27.817935 126.942497 27.817935 100.124562 63.9712485 1.805984827 0.122643 85 25 SH3425 3425 Trp1 5' flank 176.21816 297.924739 237.0714495 2.374879255 0.122618 115 5 SH15311 15311 YAL003W_1_142172_143158_INTRON_81_446 5'exon 25.348308 111.061036 25.348308 86.712728 56.030518 1.748424638 0.122583 189 77 SH20455 20455 YGL178W spliced 23.625751 75.379905 49.502828 1.69463001 0.122529 10 100 SH21786 21786 copy of SH14441 26.721221 95.170679 60.94595 1.784944851 0.122522 55 53 SH3313 3313 Thr3 5' flank 25.43213 87.281963 56.3570465 1.750948225 0.122513 162 90 SH13168 13168 MT COX1 intronic 24.607916 105.343055 24.607916 81.735139 53.1715275 1.725679137 0.122481 144 18 SH13272 13272 MT COX1 Exon 5a 24.846393 107.188738 24.846393 83.342345 54.094369 1.733152059 0.122477 51 43 SH20807 20807 YKL180W spliced 26.539702 94.359137 60.4494195 1.781392135 0.122456 208 74 SH12260 12260 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.199676 128.669408 28.199676 101.469732 64.834704 1.811807532 0.122442 169 76 SH496 496 Asp2 tRNA 41 53 10685.19727 10625.5093 10655.35328 4.027567854 0.12244 39 98 SH17845 17845 YKR094C_11_618384_617630_INTRON_9_376 intron 25.521419 112.412123 25.521419 87.890704 56.7060615 1.753629485 0.122435 194 84 SH6329 6329 snR42 3' 26.333121 93.433681 59.883401 1.777306458 0.12243 214 101 SH5211 5211 snR30 5' 25.59225 88.379911 56.9860805 1.755768787 0.12232 152 94 SH9039 9039 snR17a / U3a 481-490 + 3' 481 29.670579 104.258996 66.9647875 1.825846495 0.122275 199 45 SH5978 5978 snR36 346-355 + 3' 346 363 28.900375 102.813159 65.856767 1.818600407 0.122243 165 103 SH4554 4554 U3b (snR17b) U3b 326 342 27.295386 97.784553 62.5399695 1.796157665 0.122235 109 38 SH2862 2862 Pro7 3' flank 35.115884 112.060812 73.588348 1.866809053 0.122195 3 78 SH6890 6890 snR56 81-88 + 3' 81 25.693588 89.088146 57.390867 1.758842786 0.122091 94 74 SH16636 16636 YFR024C-A_6_203420_201947_INTRON_48_165 intron 209.0617 548.789843 209.0617 340.728143 274.8949215 2.439166717 0.122055 131 11 SH2387 2387 Phe4 5' flank - tRNA2 2 25.741272 89.42033 57.580801 1.760277702 0.122006 190 26 SH8589 8589 snR19 / U1 RNA U1 441 458 26.222437 92.727152 59.4747945 1.77433295 0.121995 38 63 SH7527 7527 snR79 5' 25.586383 88.371209 56.978796 1.755713268 0.121978 2 91 SH16027 16027 YDL191W_4_117665_118518_INTRON_4_494 5' exon 26.470752 119.555963 26.470752 94.085211 60.2779815 1.780158701 0.121971 133 100 SH18382 18382 YMR116C_13_500687_499455_INTRON_538_810 intron 25.799228 114.621208 25.799228 89.82198 57.810604 1.762007507 0.121934 80 4 SH10029 10029 RUF6 5' - 5 -9 5 27.018524 96.556336 61.78743 1.790900131 0.121923 8 76 SH3610 3610 Val1 tRNA 46 58 31.765906 107.670529 69.7182175 1.843346275 0.121916 107 39 SH5558 5558 snR33 snR33 76 93 43.567287 123.28254 83.4249135 1.921295765 0.121911 188 51 SH14083 14083 MT COB Cytbi4 24.618421 105.473007 24.618421 81.854586 53.2365035 1.726209524 0.121909 51 4 SH1417 1417 Leu1 3' flank 27.803519 100.117493 63.960506 1.805911891 0.121898 89 51 SH18923 18923 YOL121C_15_92849_92025_INTRON_21_410 intron 87.305349 267.303973 87.305349 180.998624 134.1519865 2.127597108 0.121886 71 12 SH5730 5730 snR34 3' 29.059316 103.134033 66.0966745 1.82017961 0.121866 81 99 SH6822 6822 snR52 snR52 16 32 267.546564 416.551615 342.0490895 2.534088439 0.121776 61 40 SH612 612 Gln1 3' flank 24.818848 83.21716 54.018004 1.732538533 0.121774 155 2 SH14679 14679 MT 21S rRNA 21S rRNA4 24.656189 105.779742 24.656189 82.123553 53.389871 1.727458872 0.121731 125 31 SH6419 6419 snR45 5' 26.81035 95.631702 61.221026 1.786900604 0.121727 116 59 SH5901 5901 snR36 5' 23.923097 77.27105 50.5970735 1.704125398 0.121709 97 57 SH17326 17326 YIL004C_9_348502_347943_INTRON_12_142 intron 25.474066 112.110735 25.474066 87.636669 56.5553675 1.752473829 0.121708 68 51 SH13973 13973 MT COB Cytbi3 23.337956 96.039726 23.337956 73.70177 48.519863 1.685919566 0.121627 12 8 SH6257 6257 snR42 snR42 66 85 25.145508 85.442759 55.2941335 1.742679057 0.121617 149 67 SH2395 2395 Phe4 tRNA-exon/intron 26 42 43.50705 123.221208 83.364129 1.920979217 0.121615 108 102 SH6873 6873 snR56 5' - 17 -4 17 51.185083 133.326842 92.2559625 1.964994444 0.12157 15 30 SH4768 4768 snR5 snR5 11 27 36.009842 113.263992 74.636917 1.872953692 0.121542 202 30 SH19897 19897 snR17A spliced 26.415572 93.870448 60.14301 1.77918516 0.121522 35 61 SH18925 18925 YOL121C_15_92849_92025_INTRON_21_410 intron 29.504112 132.495689 29.504112 103.991577 66.7478445 1.824437246 0.121479 177 32 SH4304 4304 telomerase RNA telomerase 556 574 25.333135 86.712872 56.0230035 1.748366388 0.121438 145 86 SH13600 13600 MT ATP8/AAP1 ATP8 24.661907 105.851245 24.661907 82.189338 53.4256225 1.727749591 0.121413 12 102 SH698 698 Gln3 tRNA 21 38 34.911605 111.836306 73.3739555 1.865541932 0.121379 211 47 SH20676 20676 YIL106W spliced 26.588977 94.661227 60.625102 1.782652482 0.12137 142 101 SH572 572 Gln1 5' flank 24.924066 83.96707 54.445568 1.735962533 0.121361 93 17 SH11635 11635 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5061 5078 180.437719 303.64714 242.0424295 2.383891504 0.121357 45 30 SH15265 15265 MT 9S rRNA 9S 25.386395 111.46744 25.386395 87.081045 56.23372 1.749996814 0.121321 80 63 SH20993 20993 YML073C spliced 30.546615 105.938384 68.2424995 1.834054925 0.121312 156 70 SH17793 17793 YKL186C_11_93537_92746_INTRON_71_233 intron 24.630343 105.625551 24.630343 81.995208 53.3127755 1.726831293 0.121202 115 95 SH14296 14296 MT VAR1 includes 5’ processing site VAR1 26.276816 118.458264 26.276816 93.181448 59.729132 1.776186204 0.121189 161 55 SH15574 15574 YBR084C-A_2_415219_414144_INTRON_3_508 intron 26.515877 119.862222 26.515877 94.346345 60.431111 1.781260579 0.121182 50 16 SH10693 10693 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 351 368 41.302163 120.300894 80.8015285 1.907419576 0.121156 60 95 SH10876 10876 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1266 1279 731.955179 997.487345 864.721262 2.936876138 0.121152 127 5 SH12932 12932 MT COX1 COX1ai2 28.862614 130.665493 28.862614 102.802879 65.8327465 1.818441974 0.121122 169 50 SH4652 4652 snR3 snR3 176 193 32.71618 108.974263 70.8452215 1.850310562 0.121107 177 94 SH9133 9133 snR7 U5 RNA 5' 24.283831 79.691948 51.9878895 1.715902187 0.121099 30 101 SH8649 8649 snR19 / U1 RNA 3' 24.399974 80.469058 52.434516 1.719617264 0.121029 140 100 SH8867 8867 LSR1 / U2 RNA U2 976 992 26.533589 94.438744 60.4861665 1.781656061 0.12101 189 100 SH11920 11920 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6486 6504 417.922141 611.101381 514.511761 2.711395307 0.120959 207 80 SH19368 19368 YPR028W_16_623522_624197_INTRON_52_184 intron 24.15016 101.973315 24.15016 78.823155 51.4866575 1.711694698 0.120926 87 96 SH12216 12216 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.602953 113.186096 25.602953 88.583143 57.093048 1.756583229 0.12088 148 21 SH7776 7776 snoRNA cluster1 intergenic 30.92399 136.512157 30.92399 106.588167 68.7560785 1.837311099 0.120865 25 96 SH2645 2645 Pro3 3' flank 24.52264 81.303537 52.9130885 1.723563112 0.120844 121 50 SH14037 14037 MT COB Cytbi4 25.442542 111.947143 25.442542 87.504601 56.4735715 1.751845254 0.120812 47 97 SH19454 19454 CYC1 23.826202 76.739947 50.2830745 1.701421824 0.120809 17 43 SH19366 19366 YPR028W_16_623522_624197_INTRON_52_184 intron 27.610389 125.935611 27.610389 99.325222 63.4678055 1.802553482 0.120795 206 87 SH3348 3348 Thr3 3' flank 24.602219 81.841828 53.2220235 1.726091382 0.120788 48 29 SH20649 20649 YIL004C spliced 27.158684 97.278191 62.2184375 1.7939191 0.120765 7 74 SH21285 21285 YPL143W spliced 29.528781 104.077255 66.803018 1.824796083 0.120764 31 75 SH9246 9246 snR6 / U6 RNA 101-112 + 3' 101 23.444981 74.415356 48.9301685 1.689576711 0.120744 82 65 SH8451 8451 snoRNA cluster 5 snR128 99.591241 296.226327 99.591241 197.635086 148.6131635 2.172057279 0.120706 124 52 SH1101 1101 Gly4 5' flank 27.454819 98.625466 63.0401425 1.799617186 0.120704 12 22 SH18037 18037 YLR333C_12_796335_795573_INTRON_1_423 5' exon 112.725867 326.945983 112.725867 215.220116 163.9729915 2.21477232 0.120692 188 24 SH5072 5072 snR11 5' 23.774067 76.431976 50.1030215 1.699863917 0.120645 131 94 SH2879 2879 Pro8 5' flank 23.974494 77.695671 50.8350825 1.706163533 0.120611 68 40 SH18602 18602 YNL069C_14_494998_493953_INTRON_29_477 intron 25.004878 108.589812 25.004878 84.584934 54.794906 1.738740186 0.120599 139 49 SH2807 2807 Pro6 3' flank 40.576312 119.375285 79.9757985 1.902958585 0.120587 159 42 SH569 569 Cys1 3' flank 26.678748 95.125031 60.9018895 1.784630767 0.120571 207 49 SH9604 9604 RUF3 RUF3 406 422 24.214976 79.280999 51.7479875 1.713893465 0.120562 119 67 SH4229 4229 telomerase RNA telomerase 181 198 26.236996 92.970777 59.6038865 1.775274579 0.120498 77 74 SH1051 1051 Gly3 5' flank - tRNA7 7 27.667391 99.608915 63.638153 1.803717566 0.120482 142 81 SH21379 21379 Lys3_4 spliced 28.838366 102.792584 65.815475 1.81832802 0.120469 14 82 SH21646 21646 copy of SH8561 24.237867 79.443548 51.8407075 1.71467092 0.120427 56 36 SH3419 3419 Trp1 5' flank 35.513538 112.681042 74.09729 1.869802325 0.120399 124 17 SH17221 17221 YHR041C_8_189855_189122_INTRON_15_115 intron 26.74959 121.212938 26.74959 95.463348 61.106469 1.786087189 0.120318 56 53 SH1383 1383 Leu1 5' flank - tRNA5 5 29.135359 103.362958 66.2491585 1.821180366 0.120306 162 103 SH4521 4521 U3b (snR17b) U3b 161 177 27.614736 99.386338 63.500537 1.802777398 0.120264 9 55 SH12074 12074 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7256 7273 27.362197 98.240208 62.8012025 1.79796796 0.120248 37 47 SH7771 7771 snoRNA cluster1 snR76/intergenic 24.186794 102.308507 24.186794 79.121713 51.6542535 1.71310609 0.120237 32 16 SH3189 3189 Ser5 tRNA 66 81 31663.8194 27667.7475 29665.78345 4.472255822 0.12017 37 36 SH1207 1207 Ile1 5' flank - tRNA11 11 28.118512 101.438212 64.778362 1.811429962 0.120141 24 54 SH6621 6621 snR48 5' 24.470606 81.015853 52.7432295 1.722166718 0.120134 211 26 SH20827 20827 YKR094C spliced 28.349928 101.883454 65.116691 1.813692323 0.120098 103 45 SH7826 7826 snoRNA cluster1 intergenic 26.33704 118.961998 26.33704 93.624958 59.980999 1.778013695 0.120064 47 101 SH21635 21635 copy of SH8140 96.717723 193.844583 145.281153 2.162209278 0.119945 16 17 SH3476 3476 Tyr1 5' flank 53.310289 136.254873 94.782581 1.976728531 0.11984 132 38 SH6259 6259 snR42 snR42 76 94 25.306737 86.677791 55.992264 1.748128028 0.11984 35 25 SH2065 2065 Lys4 5' flank - tRNA7 7 31.20575 107.024255 69.1150025 1.839572328 0.119831 137 65 SH11131 11131 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2541 2558 388.754401 574.379905 481.567153 2.682656857 0.119818 150 4 SH8264 8264 snoRNA cluster4 snR67 35.425147 147.023491 35.425147 112.598344 74.0117455 1.869300647 0.119801 52 88 SH3934 3934 RNase MRP RNaseMRP 86 101 44.888307 125.156223 85.022265 1.92953267 0.119763 147 51 SH19516 19516 ACT1 24.469769 81.04467 52.7572195 1.722281899 0.119728 82 77 SH11495 11495 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4361 4379 228.366645 366.205507 297.286076 2.473174569 0.11972 5 99 SH1261 1261 Ile2 tRNA 1 13 26.293884 93.441151 59.8675175 1.77719125 0.119717 191 25 SH15230 15230 MT COX3 cox3 23.92817 100.395766 23.92817 77.467596 50.697883 1.704989825 0.11969 131 30 SH6945 6945 snR58 86-96 + 3' 86 27.480449 98.821296 63.1508725 1.800379355 0.119679 57 48 SH14360 14360 MT ORF9 and ORF10 (hypothetical) ORF9 26.53036 120.061332 26.53036 94.530972 60.530666 1.781975452 0.11957 52 43 SH21656 21656 copy of SH8991 32.528789 108.808482 70.6686355 1.849226706 0.119562 183 98 SH14614 14614 MT 21S rRNA Sce1 endonuc 24.615818 105.655417 24.615818 82.039599 53.3277085 1.726952922 0.119547 157 93 SH8059 8059 snoRNA cluster 2 intergenic 38.026261 153.013851 38.026261 115.98759 77.0069255 1.886529785 0.119523 34 7 SH12210 12210 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 39.867458 157.361986 39.867458 118.494528 79.180993 1.898620944 0.11948 166 28 SH3029 3029 Ser2 3' flank 26.768086 95.612735 61.1904105 1.786683367 0.119438 36 17 SH8424 8424 snoRNA cluster 5 snR190/intergenic 24.152449 102.114422 24.152449 78.961973 51.557211 1.712289416 0.119427 164 99 SH12414 12414 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.499128 125.429509 27.499128 98.930381 63.2147545 1.800818456 0.119367 77 82 SH21383 21383 Lys3_4 spliced 209.688786 342.115846 275.902316 2.440755346 0.119336 174 3 SH975 975 Gly1 3' flank 25.561838 88.447585 57.0047115 1.755910752 0.119302 37 27 SH419 419 Asp1 5' flank 27.519339 99.027613 63.273476 1.801221694 0.119299 78 75 SH12457 12457 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank / 5S 162.697627 442.576655 162.697627 280.879028 221.7883275 2.345938686 0.119286 205 94 SH6953 6953 snR58 3' 25.952567 91.121226 58.5368965 1.767429693 0.119259 146 78 SH4122 4122 SRP RNA SRP RNA 501 513 2382.895834 2854.334874 2618.615354 3.41807171 0.11925 38 94 SH11427 11427 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4021 4034 33652.90563 29209.90227 31431.40395 4.49736378 0.119202 19 41 SH988 988 Gly2 5' flank 575.031273 807.909229 691.470251 2.8397735 0.119192 71 96 SH15553 15553 YBR082C_2_407127_406586_INTRON_48_142 5' exon 26.079147 117.082542 26.079147 92.003395 59.041271 1.771155698 0.119164 150 87 SH20115 20115 YDL075W spliced 30.860027 106.589697 68.724862 1.837113876 0.119144 132 71 SH8167 8167 snoRNA cluster 3; snR70 35.504206 147.242412 35.504206 112.738206 74.121206 1.869942477 0.119141 150 38 SH891 891 Glu3 5' flank 25.361637 87.10992 56.2357785 1.750012712 0.119133 211 5 SH553 553 Cys1 66-72 + 3' flank 66 3' flank 23.702974 76.112975 49.9079745 1.698169945 0.119118 10 42 SH4996 4996 snR10 snR10 11 27 47.073175 128.088128 87.5806515 1.942408172 0.119116 46 90 SH9306 9306 RUF1 RUF1 106 123 28.569776 102.356847 65.4633115 1.815997971 0.119101 12 52 SH7353 7353 snR68 5' - 7 -14 7 25.245002 86.329658 55.78733 1.746535576 0.119096 157 8 SH17257 17257 YHR101C_8_315970_314876_INTRON_111_197 5' exon 25.020459 108.848119 25.020459 84.82766 54.9240595 1.739762629 0.119062 208 96 SH15540 15540 YBR078W_2_393082_394818_INTRON_59_388 intron 24.18867 102.421287 24.18867 79.232617 51.7106435 1.713579942 0.119048 206 17 SH4679 4679 snR4 5' 24.494729 81.272968 52.8838485 1.723323052 0.119006 5 92 SH19153 19153 YPL075W_16_412249_415357_INTRON_9_759 intron 30.355893 135.074391 30.355893 105.718498 68.0371955 1.832746404 0.118954 48 98 SH18067 18067 YLR344W_12_819312_820142_INTRON_20_466 intron 25.353941 111.428389 25.353941 87.074448 56.2141945 1.749845992 0.11895 59 25 SH2814 2814 Pro6 3' flank 23.57078 75.317021 49.4439005 1.694112724 0.118943 122 81 SH15771 15771 YCR097W_3_293828_294314_INTRON_106_159 intron/exon 33.57602 142.789198 33.57602 110.213178 71.894599 1.856696266 0.118922 71 94 SH7992 7992 snoRNA cluster 2 intergenic 24.41647 104.175845 24.41647 80.759375 52.5879225 1.720886014 0.118891 31 12 SH5060 5060 snR11 5' 30.214283 105.460896 67.8375895 1.831470408 0.118867 199 41 SH17056 17056 YGR214W_7_920570_921783_INTRON_91_545 intron 24.431399 104.293216 24.431399 80.861817 52.646608 1.721370395 0.118859 101 61 SH8016 8016 snoRNA cluster 2 intergenic/snR55 23.07182 94.377895 23.07182 72.306075 47.6889475 1.678417738 0.118852 47 80 SH21496 21496 copy of SH2289 25.640314 89.021843 57.3310785 1.758390112 0.118851 126 33 SH3581 3581 Val1 5' flank 28.820294 102.847445 65.8338695 1.818449382 0.118836 180 60 SH5382 5382 snR31 5' 24.244167 79.617933 51.93105 1.715427104 0.118833 35 86 SH12968 12968 MT COX1 COX1ai2 25.303191 111.04681 25.303191 86.743619 56.023405 1.748369501 0.118832 132 74 SH6674 6674 snR48 3' 26.427406 94.12503 60.276218 1.780145995 0.118792 100 78 SH2308 2308 Phe2 3' flank 25.211135 86.132714 55.6719245 1.745636235 0.118758 54 62 SH7604 7604 snR189 snR189 91 108 26.288613 93.498101 59.893357 1.777378656 0.11874 25 30 SH10068 10068 RUF6 RUF6 186 202 73.59787 163.01751 118.30769 2.073012975 0.1187 9 85 SH9164 9164 snR7 U5 RNA U5 91 107 31.221014 107.105221 69.1631175 1.839874561 0.118667 3 49 SH21403 21403 Pro8 spliced 4230.189983 4723.849086 4477.019535 3.650988989 0.118659 182 91 SH12198 12198 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7876 7894 45.128557 125.540442 85.3344995 1.931124646 0.118652 78 16 SH10938 10938 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1576 1589 39.872629 118.552867 79.212748 1.89879508 0.118618 145 25 SH4207 4207 telomerase RNA telomerase 71 90 23.286733 73.616422 48.4515775 1.685307921 0.118614 147 95 SH12252 12252 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.612499 140.581448 32.612499 108.968949 70.790724 1.849976354 0.118614 197 71 SH320 320 Arg5 5' flank 32.362097 108.637666 70.4998815 1.848188387 0.118614 30 4 SH14741 14741 MT ORF11; tRNA Leu; tRNA Gln 5' 24.824304 107.354383 24.824304 83.530079 54.1771915 1.733816488 0.11861 192 93 SH5420 5420 snR31 snR31 166 178 32.103962 108.295125 70.1995435 1.846334288 0.118602 89 64 SH7244 7244 snR65 5' - 18 -4 18 25.844038 90.443031 58.1435345 1.764501429 0.118534 142 38 SH13415 13415 MT COX1 intronic 24.702477 106.413965 24.702477 82.711488 53.7069825 1.730030752 0.118531 179 88 SH16820 16820 YGL178W_7_167356_170575_INTRON_4_643 intron 26.230325 118.343166 26.230325 93.112841 59.671583 1.775767559 0.118524 168 60 SH5200 5200 snR13 3' 24.344036 80.309605 52.3268205 1.718724347 0.118497 122 27 SH12530 12530 MT_ORF6 + ORF7 (hypothetical) ORF6/7 26.372956 119.275648 26.372956 93.902692 60.137824 1.77914771 0.118484 111 85 SH594 594 Gln1 tRNA 11 28 25.088808 85.339907 55.2143575 1.742052023 0.118478 59 71 SH18104 18104 YLR367W_12_855877_857316_INTRON_698_1180 intron 26.328909 119.033971 26.328909 93.705062 60.0169855 1.778274178 0.118476 138 28 SH8323 8323 snoRNA cluster4 intergenic 25.014798 108.857442 25.014798 84.842644 54.928721 1.739799487 0.118457 84 76 SH11880 11880 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6286 6304 75.049949 165.002204 120.0260765 2.07927561 0.118442 144 92 SH15808 15808 YDL061C_4_341182_340627_INTRON_1_408 intron 27.742149 126.85173 27.742149 100.109581 63.925865 1.805676613 0.118439 208 85 SH15271 15271 MT 9S rRNA 9S 24.51685 104.987446 24.51685 81.470596 52.993723 1.724224431 0.118426 29 36 SH3620 3620 Val1 3' flank 25.040152 85.021241 55.0306965 1.74060501 0.118401 79 22 SH6898 6898 snR56 3' 27.944209 101.035414 64.4898115 1.809491108 0.118396 101 102 SH4311 4311 telomerase RNA telomerase 591 610 35.556219 112.847856 74.2020375 1.870415831 0.118388 32 73 SH8466 8466 snoRNA cluster 5 3' 23.43318 96.960558 23.43318 74.527378 48.980279 1.690021255 0.118299 150 94 SH1679 1679 Leu6 5' flank 25.147029 85.745607 55.446318 1.743872711 0.118284 70 55 SH596 596 Gln1 tRNA 21 37 29.07462 103.360874 66.217747 1.8209744 0.118254 104 77 SH14053 14053 MT COB Cytbi4 29.633272 133.045986 29.633272 104.412714 67.022993 1.826223818 0.11824 144 98 SH7800 7800 snoRNA cluster1 snR75 27.489651 125.471616 27.489651 98.981965 63.235808 1.800963072 0.118147 22 43 SH10021 10021 RUF6 5' 29.942288 104.998333 67.4703105 1.829112709 0.118092 60 36 SH7752 7752 snoRNA cluster1 snR76 71.419359 230.615741 71.419359 160.196382 115.8078705 2.063738076 0.11808 63 100 SH1704 1704 Leu6 3' flank 24.418352 80.840845 52.6295985 1.721230057 0.118076 182 37 SH332 332 Arg5 5' flank - tRNA10 5' flank 10 34.769524 111.830208 73.299866 1.865103181 0.118057 211 36 SH8217 8217 snoRNA cluster 3; snR51 99.030395 295.215452 99.030395 197.185057 148.107726 2.170577714 0.118054 108 79 SH3505 3505 Tyr1 tRNA 66 78 44.188109 124.346445 84.267277 1.92565896 0.118048 44 102 SH3588 3588 Val1 5' flank 24.118863 78.854747 51.486805 1.711695943 0.118041 17 31 SH20764 20764 YJR145C spliced 1400.692852 1782.480777 1591.586815 3.201830333 0.117929 83 26 SH19611 19611 RNA14 1.1 27.932931 101.022075 64.477503 1.80940821 0.117914 6 33 SH1527 1527 Leu3 106-114 + 3' flank 106 25.842096 90.489369 58.1657325 1.764667202 0.117891 200 54 SH21902 21902 copy of SH19202 24.231035 79.613153 51.922094 1.715352199 0.117845 160 22 SH8386 8386 snoRNA cluster 5 5'/snR190 28.415215 129.545964 28.415215 102.130749 65.272982 1.814733454 0.117835 177 3 SH623 623 Gln2 5' flank 25.891726 90.83666 58.364193 1.766146485 0.117823 181 49 SH19908 19908 YAL001C spliced 29.280213 103.774393 66.527303 1.822999918 0.117789 115 43 SH11863 11863 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6201 6216 27.82926 100.562591 64.1959255 1.807507464 0.117735 25 94 SH8418 8418 snoRNA cluster 5 snR190 37.059358 150.886871 37.059358 114.827513 75.9434355 1.88049024 0.117721 141 35 SH5223 5223 snR30 5' 24.898267 84.11295 54.5056085 1.736441192 0.117704 146 103 SH1644 1644 Leu5 tRNA 86 102 760.618633 1034.187856 897.4032445 2.952987635 0.117686 210 2 SH4610 4610 snR3 5' 23.638159 75.832053 49.735106 1.696663048 0.117596 110 48 SH9658 9658 RUF4 RUF4 66 80 41.16478 120.337262 80.751021 1.907148022 0.117563 121 96 SH4189 4189 telomerase RNA 5' 24.034024 78.335078 51.184551 1.709138898 0.117562 91 24 SH11398 11398 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3876 3893 799.052186 1080.391565 939.7218755 2.972999337 0.117461 15 69 SH8169 8169 snoRNA cluster 3; snR70 27.048469 123.088241 27.048469 97.039772 62.0441205 1.792700633 0.117342 73 39 SH2218 2218 Phe1 5' flank 35.268595 112.528703 73.898649 1.868636499 0.117335 8 34 SH10738 10738 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 576 593 45.149711 125.652263 85.400987 1.93146289 0.117334 96 3 SH18933 18933 YOL121C_15_92849_92025_INTRON_21_410 intron 24.564937 105.453024 24.564937 81.888087 53.226512 1.726128007 0.117321 69 87 SH6779 6779 snR50 snR50 71 85 62.481087 148.451438 105.4662625 2.023113556 0.117286 178 34 SH7074 7074 snR62 3' 27.674631 99.893391 63.784011 1.804711826 0.117269 93 13 SH4558 4558 U3b (snR17b) U3b 346 363 23.948906 77.80824 50.878573 1.706534922 0.117167 56 100 SH4380 4380 telomerase RNA telomerase 936 948 63.150385 149.351851 106.251118 2.026333508 0.117128 121 102 SH2741 2741 Pro5 tRNA 86 100 31.204935 107.163429 69.184182 1.84000681 0.117122 167 66 SH10736 10736 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 566 583 26.170858 92.832932 59.501895 1.774530797 0.117122 125 3 SH2734 2734 Pro5 tRNA-intron 51 67 159.517593 277.087406 218.3024995 2.339058708 0.117119 192 75 SH8764 8764 LSR1 / U2 RNA U2 461 480 26.374578 94.011804 60.193191 1.779547367 0.117103 40 21 SH7062 7062 snR62 3' 24.965954 84.629877 54.7979155 1.738764038 0.117086 102 69 SH2344 2344 Phe3 tRNA-intron/exon 46 61 52.895697 135.908387 94.402042 1.974981389 0.117074 163 66 SH5738 5738 snR34 3' 38.577524 116.892575 77.7350495 1.890616879 0.117 42 2 SH12515 12515 MT_ORF6 + ORF7 (hypothetical) ORF6/7 25.369607 111.72598 25.369607 87.356373 56.36299 1.750994024 0.11698 110 83 SH19982 19982 YBL091C-A spliced 28.983536 103.258441 66.1209885 1.820339338 0.116979 40 48 SH3524 3524 Tyr1 3' flank 24.293995 80.106254 52.2001245 1.717671539 0.11695 187 67 SH11887 11887 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6321 6338 29.803294 104.804037 67.3036655 1.828038717 0.116922 68 83 SH12007 12007 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6921 6943 24.283116 80.036751 52.1599335 1.717337029 0.116915 192 67 SH9384 9384 RUF1 RUF1 496 513 32.639134 109.095294 70.867214 1.85044536 0.116885 70 86 SH1104 1104 Gly4 5' flank - tRNA8 8 32.100135 108.381998 70.2410665 1.846591097 0.116846 107 49 SH4887 4887 snR8 3' 25.937902 91.249029 58.5934655 1.767849185 0.116813 106 75 SH21094 21094 YNL044W spliced 25.91763 91.109446 58.513538 1.767256358 0.116811 93 39 SH20934 20934 YLR406C spliced 27.975953 101.309012 64.6424825 1.810518027 0.116778 18 80 SH13653 13653 MT ATP6 ATP6 26.414793 119.632041 26.414793 94.217248 60.3160205 1.78043268 0.116775 76 43 SH18561 18561 YMR292W_13_854795_855293_INTRON_23_104 intron 25.573035 113.326349 25.573035 88.753314 57.1631745 1.757116339 0.116775 139 43 SH18767 18767 YNL246W_14_185459_186348_INTRON_33_127 intron 27.04382 123.108975 27.04382 97.065155 62.0544875 1.792773193 0.116731 183 17 SH1122 1122 Gly4 3' flank 25.408978 87.649602 56.52929 1.752273531 0.116676 203 51 SH3045 3045 Ser3 5' flank 26.483937 94.53641 60.5101735 1.781828398 0.116676 211 101 SH20911 20911 YLR333C spliced 27.936869 101.144642 64.5407555 1.809834045 0.116596 200 50 SH10109 10109 RUF6 RUF6 391 408 26.52964 94.753274 60.641457 1.782769627 0.116533 118 9 SH21651 21651 copy of SH8771 32.610876 109.077184 70.84403 1.850303258 0.11652 18 39 SH14195 14195 MT COB Exon6 25.315785 111.354431 25.315785 87.038646 56.1772155 1.749560209 0.116474 59 30 SH14995 14995 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.239865 110.771251 25.239865 86.531386 55.8856255 1.747300116 0.116432 15 77 SH7028 7028 snR62 5' 31.012789 106.93852 68.9756545 1.83869583 0.116421 103 11 SH10665 10665 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 211 229 28.693412 102.738635 65.7160235 1.817671276 0.116412 31 83 SH12420 12420 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.831851 115.388929 25.831851 90.557078 58.1944645 1.764881676 0.116404 51 55 SH8404 8404 snoRNA cluster 5 snR190 26.238059 118.612391 26.238059 93.374332 59.8061955 1.776746176 0.116354 144 53 SH12077 12077 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7271 7293 28.628813 102.618919 65.623866 1.817061812 0.116351 37 68 SH12441 12441 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 42.823386 164.46202 42.823386 122.638634 82.73101 1.917668326 0.11635 116 91 SH13233 13233 MT COX1 COX1-ai4 25.634881 113.850922 25.634881 89.216041 57.425461 1.75910449 0.116322 9 48 SH21784 21784 copy of SH14439 30.045443 105.290492 67.6679675 1.830383132 0.116302 84 89 SH15340 15340 YAL030W_1_87288_87754_INTRON_103_215 intron 23.897914 100.445866 23.897914 77.547952 50.722933 1.705204358 0.116257 30 41 SH6851 6851 snR52 3' 26.765031 95.841229 61.30313 1.787482649 0.116212 127 38 SH7033 7033 snR62 5' 30.68816 106.488357 68.5882585 1.836249776 0.116187 154 97 SH3243 3243 Thr1 71-73 + 3' flank 71 25.261045 86.697594 55.9793195 1.748027615 0.116165 114 59 SH12854 12854 MT COX1 COX1ai1 31.809223 138.839326 31.809223 108.030103 69.919663 1.844599326 0.116134 158 2 SH19561 19561 CBP1 2.2 24.62925 82.426 53.527625 1.728577974 0.116108 131 38 SH14260 14260 MT VAR1 includes 5’ processing site 5' 25.2229 110.669946 25.2229 86.447046 55.834973 1.74690631 0.116098 131 90 SH21858 21858 copy of SH17803 107.366278 208.638797 158.0025375 2.198664062 0.116087 170 68 SH3312 3312 Thr3 5' flank 24.0378 78.482415 51.2601075 1.709779513 0.116069 112 83 SH8508 8508 snR19 / U1 RNA U1 36 57 25.085609 85.530807 55.308208 1.742789587 0.116056 11 63 SH3291 3291 Thr2 tRNA 56 70 36.475556 114.171726 75.323641 1.876931305 0.116053 207 20 SH21934 21934 copy of SH19617 29.974496 105.172494 67.573495 1.829776382 0.116046 151 35 SH13277 13277 MT COX1 Exon 5a 24.37263 104.082864 24.37263 80.710234 52.541432 1.720501905 0.116005 191 73 SH3117 3117 Ser4 5' flank - tRNA7 7 27.389923 98.694677 63.0423 1.799632049 0.115997 132 43 SH20793 20793 YKL156W spliced 27.335173 98.446116 62.8906445 1.798586045 0.115988 38 74 SH1097 1097 Gly4 5' flank 27.425826 98.860866 63.143346 1.800327592 0.115963 178 100 SH10178 10178 RUF6 RUF6 736 754 26.565956 94.959803 60.7628795 1.783638347 0.115961 28 9 SH5395 5395 snR31 snR31 41 59 24.759599 83.322617 54.041108 1.732724245 0.115951 107 83 SH3292 3292 Thr2 61-72 + 3' flank 61 129.320686 237.785635 183.5531605 2.263761867 0.115908 93 67 SH15018 15018 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.322876 111.461081 25.322876 87.138205 56.2305405 1.749972258 0.115894 165 34 SH9711 9711 RUF4 RUF4 331 347 24.558133 81.967039 53.262586 1.726422248 0.115866 214 66 SH3027 3027 Ser2 3' flank 28.092951 101.619936 64.8564435 1.81195313 0.115858 115 37 SH10841 10841 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1091 1114 114.877092 218.714372 166.795732 2.222184934 0.115853 26 92 SH8301 8301 snoRNA cluster4 intergenic 24.901037 108.200196 24.901037 84.299159 54.600098 1.737193422 0.115805 164 45 SH11110 11110 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2436 2454 26.400067 94.226359 60.313213 1.780412465 0.115753 35 84 SH5795 5795 snR35 snR35 161 182 23.396509 74.495928 48.9462185 1.689719145 0.115751 51 87 SH15470 15470 YBL087C_2_60732_59815_INTRON_43_546 3' exon 28.22892 129.118884 28.22892 101.889964 65.059442 1.813310334 0.115694 20 104 SH2683 2683 Pro4 tRNA 81 95 28.821965 103.02269 65.9223275 1.819032532 0.115687 154 66 SH6235 6235 snR42 5' 28.873007 103.122148 65.9975775 1.819527995 0.115641 153 101 SH1406 1406 Leu1 101-115 + 3' flank 101 46.278682 127.251714 86.765198 1.938345562 0.115637 177 90 SH19006 19006 YOR182C_15_678792_678190_INTRON_4_414 5' exon 30.328133 135.182797 30.328133 105.854664 68.0913985 1.833092254 0.115613 7 88 SH13030 13030 MT COX1 COX1ai2 25.544848 113.217948 25.544848 88.6731 57.108974 1.756704358 0.11555 188 32 SH14647 14647 MT 21S rRNA intronic 24.380411 104.183348 24.380411 80.802937 52.591674 1.720916995 0.115524 178 89 SH4102 4102 SRP RNA SRP RNA 401 417 25.244943 86.646765 55.945854 1.747767908 0.115518 112 26 SH15353 15353 YBL026W_2_170585_171000_INTRON_55_182 intron/exon 142.967726 397.66137 142.967726 255.693644 199.330685 2.299574159 0.115511 94 14 SH4900 4900 snR9 5' 96.859549 194.539539 145.699544 2.163458193 0.115493 200 4 SH21485 21485 copy of SH1851 699.047435 961.421761 830.234598 2.919200828 0.115452 119 56 SH2967 2967 Ser1 tRNA 66 78 30.995907 106.966737 68.981322 1.838731513 0.11543 8 63 SH11216 11216 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2966 2984 83.148925 176.136488 129.6427065 2.112748089 0.115402 204 79 SH14565 14565 MT 21S rRNA 21S rRNA3 50.155212 181.543888 50.155212 132.388676 91.271944 1.960337301 0.1154 132 54 SH9598 9598 RUF3 RUF3 376 393 25.491047 88.322815 56.906931 1.755165165 0.115379 29 92 SH17473 17473 YJL001W_10_434855_435618_INTRON_66_181 exon/intron 27.153817 123.822644 27.153817 97.668827 62.411322 1.795263382 0.115368 116 40 SH644 644 Gln2 tRNA 6 23 91.217283 186.965225 139.091254 2.143299823 0.115367 168 43 SH10846 10846 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1116 1133 155.946283 272.684723 214.315503 2.331053588 0.115335 7 104 SH19029 19029 YOR182C_15_678792_678190_INTRON_4_414 intron/exon 42.70025 164.238347 42.70025 122.538097 82.6191735 1.917080846 0.115311 39 15 SH13692 13692 MT ORF 5 (hypothetical) ORF5 / 3' 24.220397 102.974198 24.220397 79.753801 51.987099 1.715895583 0.11531 204 4 SH9001 9001 snR17a / U3a U3a 291 306 30.605071 106.385309 68.49519 1.835660075 0.115296 177 77 SH17248 17248 YHR097C_8_298611_297387_INTRON_126_249 intron 37.718998 152.530588 37.718998 115.81159 76.765294 1.885164918 0.115256 28 62 SH19391 19391 YPR043W_16_654161_654842_INTRON_3_405 intron 23.611651 98.46206 23.611651 75.850409 49.73103 1.696627454 0.115231 169 71 SH11300 11300 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3386 3403 36.234164 113.905679 75.0699215 1.875465962 0.115228 138 19 SH2876 2876 Pro8 5' flank 26.790294 96.030317 61.4103055 1.788241258 0.11522 21 80 SH4659 4659 snR3 3' 22.469426 69.026917 45.7481715 1.660373741 0.115176 57 58 SH6292 6292 snR42 snR42 241 255 83.100428 176.098153 129.5992905 2.112602624 0.115134 52 38 SH1712 1712 Leu6 3' flank 26.264021 93.662916 59.9634685 1.777886746 0.115075 174 78 SH21673 21673 copy of SH9623 23.966625 78.09599 51.0313075 1.707836696 0.115066 8 69 SH3104 3104 Ser4 5' flank 26.565697 95.027525 60.796611 1.783879371 0.115037 79 23 SH5789 5789 snR35 snR35 131 147 27.939487 101.28165 64.6105685 1.810303562 0.115022 5 46 SH265 265 Arg4 5' flank 25.153 86.076367 55.6146835 1.74518947 0.114984 17 73 SH16641 16641 YFR024C-A_6_203420_201947_INTRON_48_165 intron/exon 27.024856 123.139778 27.024856 97.114922 62.069889 1.792880969 0.114948 188 81 SH455 455 Asp1 3' flank 24.191264 79.593221 51.8922425 1.715102439 0.114915 88 56 SH106 106 Arg1 5' flank 26.296145 93.821039 60.058592 1.778575146 0.114894 19 40 SH16087 16087 YDR025W_4_491510_492319_INTRON_46_384 intron 25.468467 112.682939 25.468467 88.214472 56.8414695 1.754665297 0.114883 163 24 SH8806 8806 LSR1 / U2 RNA U2 671 689 24.356314 80.695913 52.5261135 1.720375268 0.114883 148 74 SH4791 4791 snR5 snR5 126 144 24.971577 84.869321 54.920449 1.739734079 0.11482 91 70 SH11588 11588 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4826 4839 250.091084 395.577247 322.8341655 2.50897949 0.114807 153 73 SH10461 10461 RUF8 RUF8 231 245 29.061236 103.529176 66.295206 1.821482124 0.114728 196 65 SH19052 19052 YOR234C_15_779404_778554_INTRON_20_546 intron 25.612335 113.829064 25.612335 89.216729 57.414532 1.759021829 0.114633 14 23 SH3258 3258 Thr1 3' flank 25.127785 85.938847 55.533316 1.744553607 0.114627 49 75 SH11981 11981 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6791 6808 50.957738 133.510721 92.2342295 1.964892124 0.114592 43 18 SH13583 13583 MT COX1 Exon 6 24.48015 105.031726 24.48015 81.551576 53.015863 1.724405835 0.114586 50 95 SH18406 18406 YMR125W_13_517538_520445_INTRON_26_347 intron 25.419339 112.328224 25.419339 87.908885 56.664112 1.753308087 0.114576 176 53 SH16704 16704 YGL031C_7_438393_437938_INTRON_1_456 intron 34.099281 144.225662 34.099281 111.126381 72.612831 1.861013369 0.114566 155 17 SH10709 10709 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 431 446 36.4404 114.210249 75.3253245 1.876941011 0.114552 198 47 SH19503 19503 YPT1 24.341798 80.627445 52.4846215 1.72003207 0.114544 188 6 SH19270 19270 YPL143W_16_282121_282969_INTRON_20_544 intron 24.367747 104.1717 24.367747 80.803953 52.58585 1.720868898 0.114509 198 81 SH12673 12673 MT tRNA Trp 5' 22.848292 93.135541 22.848292 71.287249 47.0677705 1.672723627 0.114475 79 14 SH8076 8076 snoRNA cluster 2 snR61 46.925361 174.124335 46.925361 128.198974 87.5621675 1.942316503 0.114456 92 33 SH9723 9723 RUF4 RUF4 391 406 28.811909 103.07092 65.9414145 1.819158259 0.114456 131 40 SH3055 3055 Ser3 5' flank 27.176993 97.848484 62.5127385 1.795968524 0.1144 172 59 SH16487 16487 YER102W_5_362729_363698_INTRON_1_360 intron 26.365641 119.538409 26.365641 94.172768 60.2692045 1.780095459 0.114376 210 27 SH267 267 Arg4 5' flank 26.75957 95.955253 61.3574115 1.78786703 0.114368 156 91 SH6116 6116 snR39B 5' 25.528571 88.671828 57.1001995 1.756637626 0.114346 92 100 SH9558 9558 RUF3 RUF3 176 192 3147.374521 3655.847114 3401.610818 3.531684624 0.11428 8 22 SH16055 16055 YDL191W_4_117665_118518_INTRON_4_494 3' exon 36.867754 150.643607 36.867754 114.775853 75.8218035 1.87979411 0.114276 23 54 SH16746 16746 YGL076C_7_365994_364333_INTRON_565_1032 intron 24.419805 104.592941 24.419805 81.173136 52.7964705 1.72260489 0.11427 120 7 SH6345 6345 snR43 5' 26.807587 96.181087 61.494337 1.788835124 0.11426 159 97 SH5091 5091 snR11 snR11 56 73 24.563935 82.144204 53.3540695 1.72716755 0.114258 187 48 SH7673 7673 snoRNA cluster1 snR78 23.688201 99.086022 23.688201 76.397821 50.043011 1.699343433 0.114234 140 72 SH9512 9512 RUF3 5' 24.159299 79.439787 51.799543 1.714325928 0.114208 132 64 SH9433 9433 RUF2 RUF2 6 22 37.449003 115.526131 76.487567 1.883590847 0.114135 201 60 SH19184 19184 YPL079W_16_406631_407534_INTRON_12_432 intron 24.282021 103.550052 24.282021 80.268031 52.275026 1.718294257 0.11407 73 25 SH5491 5491 snR32 snR32 116 131 129.558479 238.356439 183.957459 2.264717402 0.114066 202 102 SH10459 10459 RUF8 RUF8 221 238 25.551502 88.853555 57.2025285 1.757415226 0.114066 201 15 SH8775 8775 LSR1 / U2 RNA U2 516 532 25.832443 90.786183 58.309313 1.765737925 0.113985 191 28 SH16822 16822 YGL178W_7_167356_170575_INTRON_4_643 intron 26.433098 119.939871 26.433098 94.506773 60.4699355 1.781539505 0.11398 174 36 SH21768 21768 copy of SH13603 25.158694 86.204828 55.681761 1.745712962 0.113963 9 6 SH12912 12912 MT COX1 COX1ai2 24.756343 107.234738 24.756343 83.478395 54.117369 1.733336675 0.113912 195 26 SH17687 17687 YKL006W_11_431544_432358_INTRON_130_527 intron 32.808442 141.28419 32.808442 109.475748 71.142095 1.85212665 0.113912 142 15 SH2517 2517 Pro1 3' flank 24.771241 83.580858 54.1760495 1.733807333 0.1139 157 55 SH3137 3137 Ser4 91-101 + 3' flank 91 7466.494389 7799.202732 7632.848561 3.882686646 0.113889 56 103 SH13389 13389 MT COX1 intronic 27.092282 123.595599 27.092282 97.503317 62.2977995 1.794472707 0.113875 135 55 SH14958 14958 MT tRNA Met 3' 26.139813 118.067107 26.139813 92.927294 59.5335535 1.774761806 0.113864 7 80 SH1319 1319 Ile3 5' flank 23.087132 72.765518 47.926325 1.680574128 0.113831 56 73 SH14640 14640 MT 21S rRNA sce1 / intronic 23.372537 96.866905 23.372537 74.494368 48.9334525 1.689605858 0.11383 85 26 SH13639 13639 MT ATP6 ATP6 24.04615 101.768236 24.04615 78.722086 51.384118 1.710828906 0.113825 54 55 SH13417 13417 MT COX1 intronic 27.376261 125.180555 27.376261 98.804294 63.0902775 1.799962438 0.113779 144 48 SH17360 17360 YIL052C_9_257061_256224_INTRON_38_509 intron 24.283479 103.586915 24.283479 80.303436 52.2934575 1.718447357 0.113764 25 19 SH7171 7171 snR64 5' 47.94462 129.603776 88.774198 1.948286758 0.11376 87 92 SH18752 18752 YNL162W_14_331319_332151_INTRON_5_516 intron 25.778172 115.215716 25.778172 90.437544 58.107858 1.764234867 0.113717 71 2 SH11393 11393 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3851 3868 43544.27599 36774.36051 40159.31825 4.603786332 0.113705 90 95 SH17511 17511 YJL136C_10_156971_156248_INTRON_25_484 intron 91.296103 277.548948 91.296103 187.252845 139.274474 2.143871527 0.113673 129 68 SH11293 11293 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3351 3367 71.579749 160.797276 116.1885125 2.065163192 0.113657 74 55 SH4950 4950 snR9 snR9 156 172 31.394612 107.601217 69.4979145 1.841971772 0.113641 106 62 SH8647 8647 snR19 / U1 RNA 3' 24.97701 85.012644 54.994827 1.74032184 0.113626 85 17 SH359 359 Arg5 3' flank 27.791097 100.712594 64.2518455 1.807885606 0.113624 170 67 SH8235 8235 snoRNA cluster 3; 3' 26.06453 117.49177 26.06453 92.42724 59.245885 1.772658191 0.113612 70 75 SH446 446 Asp1 tRNA 51 65 27.857255 101.017608 64.4374315 1.809138221 0.1136 156 35 SH7896 7896 snoRNA cluster1 intergenic 23.789421 99.861906 23.789421 77.072485 50.430953 1.702697175 0.113597 168 71 SH8431 8431 snoRNA cluster 5 intergenic 529.350762 1282.579421 529.350762 754.228659 641.7897105 2.80739275 0.113587 194 78 SH21042 21042 YMR133W spliced 31.400819 107.612564 69.5066915 1.842026617 0.113585 140 42 SH15663 15663 YBR189W_2_604466_605466_INTRON_8_420 intron 24.122099 102.366959 24.122099 79.24486 51.6834795 1.713351744 0.113583 158 17 SH7238 7238 snR65 5' 26.228038 93.570719 59.8993785 1.777422316 0.113576 199 13 SH21933 21933 copy of SH21373 54.847389 138.707221 96.777305 1.985773524 0.113555 141 12 SH13477 13477 MT COX1 intronic 24.565155 105.779232 24.565155 82.214077 53.389616 1.727456797 0.113541 203 29 SH13647 13647 MT ATP6 ATP6 26.222781 118.760167 26.222781 93.537386 59.8800835 1.777282397 0.11354 203 40 SH21154 21154 YNL265C spliced 26.837026 96.369109 61.6030675 1.789602338 0.113539 164 42 SH3136 3136 Ser4 tRNA 86 101 21657.72845 19893.11858 20775.42352 4.317549886 0.113533 170 80 SH5233 5233 snR30 snR30 16 32 26.511727 94.895597 60.703662 1.783214891 0.113532 37 73 SH10504 10504 RUF8 RUF8 446 462 27.554419 99.639611 63.597015 1.803436732 0.113498 193 38 SH4018 4018 SRP RNA 5' 24.12935 79.301052 51.715201 1.713618217 0.113485 170 46 SH4692 4692 snR4 5' - 13 13 59.842454 145.272785 102.5576195 2.010967932 0.113468 11 23 SH2262 2262 Phe2 5' flank 25.643275 89.538271 57.590773 1.760352908 0.113433 13 73 SH10013 10013 RUF6 5' 25.214305 86.627472 55.9208885 1.747574063 0.113415 47 94 SH5515 5515 snR32 3' 26.024111 92.166437 59.095274 1.771552751 0.113401 209 13 SH21486 21486 copy of SH1852 35018.39276 30365.08755 32691.74015 4.514438038 0.113387 140 24 SH12373 12373 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.649687 138.609919 31.649687 107.960232 69.8049595 1.843886279 0.113364 18 51 SH1336 1336 Ile3 tRNA-intron 61 75 37.356922 115.456558 76.40674 1.88313167 0.113293 125 30 SH14583 14583 MT 21S rRNA intronic 26.785154 121.938908 26.785154 96.153754 61.469454 1.788659356 0.113273 131 7 SH10717 10717 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 471 488 36.243451 114.029157 75.136304 1.875849828 0.11323 154 61 SH3381 3381 Thr4 5' flank - tRNA8 8 24.940048 84.79506 54.867554 1.7393156 0.113218 63 2 SH17706 17706 YKL081W_11_282533_284097_INTRON_206_531 intron 24.799756 107.640626 24.799756 83.84087 54.320313 1.734962264 0.113151 11 11 SH8234 8234 snoRNA cluster 3; 3' 25.226058 110.964336 25.226058 86.738278 55.982168 1.748049713 0.113059 54 27 SH8994 8994 snR17a / U3a U3a 256 270 30.454038 106.241377 68.3477075 1.834723952 0.112892 176 40 SH17463 17463 YIL148W_9_68708_69528_INTRON_9_442 intron 265.103731 679.834983 265.103731 415.731252 340.4174915 2.532011867 0.112868 27 43 SH1736 1736 Leu7 5' flank 29.269049 104.026 66.6475245 1.823784023 0.112845 41 96 SH14117 14117 MT COB intronic 25.080628 109.860589 25.080628 85.779961 55.4302945 1.743747186 0.112841 37 42 SH8961 8961 snR17a / U3a U3a 91 108 24.464238 81.594103 53.0291705 1.724514834 0.112833 167 20 SH21014 21014 YMR033W spliced 35.46238 113.034171 74.2482755 1.870686371 0.112792 89 70 SH7699 7699 snoRNA cluster1 intergenic 23.131233 95.243428 23.131233 73.112195 48.121714 1.682341088 0.112734 74 43 SH14044 14044 MT COB Cytbi4 25.555094 113.555041 25.555094 88.999947 57.2775205 1.757984209 0.11273 139 37 SH7616 7616 snR189 snR189 151 169 26.345614 94.206139 60.2758765 1.780143534 0.112701 54 84 SH7259 7259 snR65 snR65 71 88 26.44756 94.667136 60.557348 1.782166848 0.1127 177 59 SH15005 15005 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 24.3591 104.262366 24.3591 80.903266 52.631183 1.721243132 0.11265 204 93 SH6818 6818 snR52 5' - 14 -4 14 52.123301 135.202352 93.6628265 1.97156726 0.112649 180 82 SH21353 21353 YPR187W spliced 37.820911 116.107537 76.964224 1.886288895 0.112607 56 68 SH6230 6230 snR42 5' 28.487844 102.554164 65.521004 1.816380544 0.112597 176 58 SH12687 12687 MT tRNA Trp 3' 26.492446 120.370505 26.492446 94.878059 60.6852525 1.783083163 0.112595 115 24 SH13044 13044 MT COX1 COX1ai2 24.509079 105.426281 24.509079 81.917202 53.2131405 1.726018891 0.112589 158 42 SH1531 1531 Leu3 3' flank 24.72994 83.41414 54.07204 1.732972755 0.112589 6 49 SH19398 19398 YPR063C_16_678315_677807_INTRON_42_127 exon/intron 23.845977 100.351109 23.845977 77.505132 50.6755545 1.70479851 0.112587 210 67 SH3264 3264 Thr2 5' flank 25.574257 89.144015 57.359136 1.758602601 0.112585 161 90 SH17702 17702 YKL081W_11_282533_284097_INTRON_206_531 exon/intron 24.802684 107.715327 24.802684 83.912643 54.3576635 1.735260781 0.112561 141 40 SH12847 12847 MT COX1 COX1ai1 26.395229 119.842774 26.395229 94.447545 60.421387 1.78119069 0.11247 77 85 SH13609 13609 MT ATP8/AAP1 3' 26.286088 119.244963 26.286088 93.958875 60.1224815 1.779036897 0.112407 177 9 SH1582 1582 Leu4 tRNA 81 97 10705.41318 10712.93876 10709.17597 4.029756055 0.112406 102 100 SH8673 8673 LSR1 / U2 RNA U2 6 22 26.527782 95.053581 60.7906815 1.783837012 0.112387 34 76 SH16717 16717 YGL031C_7_438393_437938_INTRON_1_456 intron 25.622287 114.113845 25.622287 89.491558 57.5569225 1.760097565 0.112377 116 85 SH1202 1202 Ile1 5' flank 27.844582 101.057783 64.4511825 1.80923089 0.112361 17 64 SH6957 6957 snR58 3' 26.520201 95.022846 60.7715235 1.783700124 0.112339 106 89 SH14777 14777 MT ORF11; tRNA Leu; tRNA Gln tRNA Gln 35.783062 148.26297 35.783062 113.479908 74.631485 1.872922083 0.112331 89 67 SH8692 8692 LSR1 / U2 RNA U2 101 119 62.980547 149.515815 106.248181 2.026321504 0.11231 68 84 SH2272 2272 Phe2 5' flank 24.299216 80.531726 52.415471 1.719459493 0.112301 77 25 SH12556 12556 MT_15S 5' / MT_15S 27.823184 127.78917 27.823184 100.965986 64.394585 1.808849349 0.112281 127 6 SH17104 17104 YHL001W_8_104270_105084_INTRON_130_527 3' exon 30.811358 136.689169 30.811358 106.877811 68.8445845 1.837869783 0.112271 67 37 SH3755 3755 Val4 tRNA 1 13 125.558283 233.354558 179.4564205 2.253959001 0.112242 122 21 SH3236 3236 Thr1 tRNA 36 52 120.089608 226.108176 173.098892 2.238294288 0.112228 111 7 SH4852 4852 snR8 snR8 41 57 27.916973 101.401703 64.659338 1.810631254 0.112213 187 94 SH14798 14798 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys 32.611014 140.916463 32.611014 109.305449 70.9582315 1.851002783 0.1122 48 26 SH9036 9036 snR17a / U3a U3a 466 480 175.229153 298.541371 236.885262 2.374538042 0.112179 116 47 SH4547 4547 U3b (snR17b) U3b 291 307 26.683456 95.775055 61.2292555 1.786958979 0.112175 75 7 SH11480 11480 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4286 4301 17290.6314 16332.78452 16811.70796 4.225611837 0.112109 211 84 SH7968 7968 snoRNA cluster 2 5' 26.362029 119.686403 26.362029 94.324374 60.3432015 1.780628348 0.112105 149 54 SH346 346 Arg5 66-72 + 3' flank 66 3' flank 25.790927 90.675965 58.233446 1.765172491 0.112096 185 15 SH13737 13737 MT COB Exon1 23.563675 98.363927 23.563675 75.800252 49.6819635 1.696198751 0.112033 189 29 SH5827 5827 snR35 snR35 321 335 26.504706 94.977627 60.7411665 1.783483128 0.112004 5 53 SH11014 11014 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1956 1969 81.331023 174.024926 127.6779745 2.106115984 0.111996 50 58 SH117 117 Arg1 5' flank 28.275397 102.182111 65.228754 1.814439083 0.111947 116 87 SH8941 8941 snR17a / U3a 5' - 7 -9 7 25.953532 91.816344 58.884938 1.770004222 0.111922 122 102 SH7338 7338 snR68 5' 28.800319 103.188729 65.994524 1.819507901 0.111901 130 84 SH14724 14724 MT tRNA cys; tRNA his intergenic 25.112828 110.193918 25.112828 86.08109 55.596959 1.745051038 0.111877 17 93 SH21341 21341 YPR098C spliced 23.532615 75.622203 49.577409 1.695283826 0.111866 26 70 SH10280 10280 RUF7 RUF7 11 30 27.152147 97.929992 62.5410695 1.796165304 0.111866 12 4 SH9053 9053 snR17a / U3a 3' 29.036487 103.64205 66.3392685 1.821770678 0.111822 33 56 SH5394 5394 snR31 snR31 36 52 24.829353 84.1618 54.4955765 1.736361251 0.111801 134 51 SH5164 5164 snR13 5' 23.943732 78.214487 51.0791095 1.708243317 0.111772 23 93 SH757 757 Gln4 tRNA 56 70 69.902954 158.747316 114.325135 2.058141723 0.111751 166 66 SH6995 6995 snR60 snR60 56 76 31.284807 107.550669 69.417738 1.841470458 0.11175 33 43 SH14094 14094 MT COB Cytbi4 24.341627 104.204221 24.341627 80.862594 52.6021105 1.721003169 0.111747 131 78 SH15409 15409 YBL059C-A_2_110500_110086_INTRON_35_119 intron 24.99116 109.26991 24.99116 85.27875 55.134955 1.741427024 0.111726 205 18 SH11177 11177 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2771 2786 58.792572 144.045155 101.4188635 2.00611874 0.111705 188 40 SH6839 6839 snR52 3' 24.064039 79.015618 51.5398285 1.712142969 0.111702 157 39 SH5388 5388 snR31 snR31 6 24 28.829469 103.257853 66.043661 1.81983114 0.111653 78 104 SH2288 2288 Phe2 tRNA-exon/intron 36 53 30.597124 106.576973 68.5870485 1.836242114 0.111645 36 34 SH9371 9371 RUF1 RUF1 431 449 25.062389 85.763698 55.4130435 1.743612004 0.111636 208 51 SH7979 7979 snoRNA cluster 2 snR57 50.580784 182.791573 50.580784 133.210789 91.8957865 1.963295599 0.111633 212 44 SH10172 10172 RUF6 RUF6 706 718 33.533946 110.547761 72.0408535 1.857578849 0.111628 41 20 SH2242 2242 Phe1 86-72 + 3' flank 86 105 24.805398 84.013558 54.409478 1.735674559 0.111623 82 27 SH1035 1035 Gly3 5' flank 23.900118 77.942224 50.921171 1.706898382 0.111588 81 37 SH8227 8227 snoRNA cluster 3; snR51/3' 27.834461 127.908837 27.834461 101.074376 64.4544185 1.809252695 0.111566 176 38 SH17987 17987 YLR275W_12_694378_694800_INTRON_6_95 intron 25.29257 111.616675 25.29257 87.324105 56.3083375 1.750572705 0.111529 112 2 SH17458 17458 YIL148W_9_68708_69528_INTRON_9_442 intron 29.904421 134.200745 29.904421 105.296324 67.6003725 1.829949089 0.111486 100 68 SH7625 7625 snR189 3' 24.567037 82.408079 53.487558 1.72825277 0.111436 189 55 SH11209 11209 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2931 2949 25.410226 88.131263 56.7707445 1.75412459 0.111428 164 2 SH2230 2230 Phe1 tRNA-exon/intron 26 42 41.26786 120.845928 81.056894 1.908789958 0.111426 170 86 SH5557 5557 snR33 snR33 71 88 24.132029 79.490423 51.811226 1.714423869 0.111419 197 10 SH935 935 Gly1 5' flank 24.164238 79.709603 51.9369205 1.715476195 0.111361 73 85 SH7958 7958 snoRNA cluster 2 5' 24.541693 105.786055 24.541693 82.244362 53.3930275 1.727484547 0.111345 49 80 SH2666 2666 Pro4 5' flank - tRNA8 8 213.106811 348.260946 280.6838785 2.448217469 0.111317 15 86 SH3953 3953 RNase MRP RNaseMRP 181 195 25.812657 90.900516 58.3565865 1.76608988 0.111294 26 37 SH21816 21816 copy of SH15701 26.32351 94.211514 60.267512 1.780083263 0.111276 46 84 SH19341 19341 YPL241C_16_96258_95372_INTRON_26_105 3' exon 27.382299 125.411209 27.382299 99.02891 63.2056045 1.800755589 0.11124 70 93 SH16528 16528 YER131W_5_423587_424307_INTRON_1_361 intron 145.660618 404.567389 145.660618 259.906771 202.7836945 2.307033031 0.111215 160 85 SH4354 4354 telomerase RNA telomerase 806 824 25.057863 85.770543 55.414203 1.743621091 0.111213 69 88 SH1802 1802 Leu8 tRNA-exon/intron 36 51 26.369986 94.426956 60.398471 1.781025945 0.111206 48 62 SH3789 3789 RNaseP 5' flank 24.360181 81.033205 52.696693 1.721783362 0.111202 86 102 SH11126 11126 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2516 2531 11790.49238 11671.01176 11730.75207 4.069325856 0.111169 127 74 SH16214 16214 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 30.353786 135.507627 30.353786 106.153841 68.2538135 1.834126921 0.111142 157 60 SH8492 8492 snR19 / U1 RNA 5' 24.826828 84.202569 54.5146985 1.736513615 0.111142 61 5 SH20326 20326 YER056C-A spliced 38.133777 116.626902 77.3803395 1.888630631 0.111134 18 10 SH15670 15670 YBR191W_2_606228_607098_INTRON_12_399 exon/intron 27.961114 128.582114 27.961114 101.621 64.791057 1.811515065 0.111127 33 2 SH15236 15236 MT COX3 3' 24.62493 106.454346 24.62493 82.829416 53.727173 1.73019399 0.111103 130 74 SH9089 9089 snR14 / U4 RNA U4 61 82 25.819151 90.963573 58.391362 1.766348605 0.111099 107 56 SH2307 2307 Phe2 3' flank 27.506352 99.611757 63.5590545 1.803177428 0.111042 25 52 SH5312 5312 snR30 snR30 411 427 24.750281 83.689345 54.219813 1.734158015 0.111027 122 104 SH9496 9496 RUF2 3' 27.991853 101.689731 64.840792 1.811848311 0.110954 84 81 SH10855 10855 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1161 1176 794.799967 1079.90394 937.3519535 2.971902689 0.11093 80 32 SH8986 8986 snR17a / U3a U3a 216 230 46.980924 128.5081 87.744512 1.943219963 0.110917 142 29 SH16561 16561 YER133W_5_432491_433954_INTRON_178_702 intron 23.455087 97.674158 23.455087 75.219071 49.337079 1.693173434 0.110913 44 95 SH19881 19881 Negative Control 87.629273 182.584164 135.1067185 2.130676946 0.110905 89 53 SH21792 21792 copy of SH14652 26.01684 92.352702 59.184771 1.772209972 0.1109 99 54 SH17284 17284 YHR141C_8_382752_381991_INTRON_5_445 intron 23.845888 100.489033 23.845888 77.643145 50.7445165 1.705389119 0.110879 17 89 SH16881 16881 YGL189C_7_148970_148233_INTRON_1_368 exon/intron 29.738897 133.760408 29.738897 105.021511 67.380204 1.828532322 0.11085 196 54 SH15768 15768 YCR097W_3_293828_294314_INTRON_106_159 exon/intron 24.057242 102.104076 24.057242 79.046834 51.552038 1.712245839 0.11078 32 15 SH12679 12679 MT tRNA Trp tRNA 29.840035 134.056035 29.840035 105.216 67.5280175 1.829484 0.110765 50 7 SH16350 16350 YDR500C_4_1450856_1450201_INTRON_8_396 intron 40.090183 158.405395 40.090183 119.315212 79.7026975 1.90147302 0.110765 116 10 SH4971 4971 snR9 3' 39.552817 118.590834 79.0718255 1.898021765 0.110751 202 64 SH4991 4991 snR10 5' - 5 -14 5 23.933093 78.228272 51.0806825 1.708256691 0.110746 164 15 SH14604 14604 MT 21S rRNA Sce1 endonuc 26.173984 118.639917 26.173984 93.465933 59.8199585 1.776846107 0.110726 125 8 SH10857 10857 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1171 1184 524.750455 749.900744 637.3255995 2.804361363 0.110717 210 86 SH6600 6600 snR47 3' 86.522059 181.105958 133.8140085 2.126501581 0.1107 50 91 SH3969 3969 RNase MRP RNaseMRP 261 278 25.944908 91.872638 58.908773 1.770179977 0.11069 47 55 SH10799 10799 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS/18S 881 901 24.93145 84.960898 54.946174 1.739937457 0.110686 180 88 SH13092 13092 MT COX1 COX1ai3 24.243665 103.543217 24.243665 80.299552 52.2716085 1.718265864 0.110644 79 91 SH3420 3420 Trp1 5' flank 26.072043 92.76707 59.4195565 1.773929406 0.110586 109 32 SH16352 16352 YDR500C_4_1450856_1450201_INTRON_8_396 intron 54.123651 191.107591 54.123651 137.98394 96.0537955 1.98251453 0.11056 117 67 SH6076 6076 snR37 snR37 296 312 1166.915032 1520.456385 1343.685709 3.128297698 0.110551 17 96 SH13664 13664 MT ATP6 ATP6 25.490429 113.247696 25.490429 88.757267 57.123848 1.756817455 0.11055 136 27 SH1846 1846 Leu9 5' flank 24.654605 83.082424 53.8685145 1.731334999 0.110511 212 85 SH3165 3165 Ser5 5' flank 24.308743 80.749379 52.529061 1.720399638 0.110477 107 5 SH3331 3331 Thr3 tRNA 1 15 43.194995 123.506748 83.3508715 1.920910145 0.110442 32 67 SH15790 15790 YDL029W_4_399336_400634_INTRON_23_145 intron/exon 25.415331 112.672496 25.415331 88.257165 56.836248 1.754625401 0.110421 54 73 SH5601 5601 snR34 5' 25.696995 90.185658 57.9413265 1.762988434 0.110409 147 92 SH16447 16447 YER074W_5_306319_307192_INTRON_4_469 intron/exon 24.579687 106.163668 24.579687 82.583981 53.581834 1.729017575 0.110391 201 66 SH226 226 Arg3 5 'flank - tRNA 5 5' flank 5 25.738834 90.475755 58.1072945 1.764230655 0.110387 200 49 SH19209 19209 YPL081W_16_404945_406039_INTRON_8_508 intron 26.566443 120.944932 26.566443 95.378489 60.972466 1.78513376 0.110384 56 28 SH5640 5640 snR34 snR34 121 133 68.323797 156.758105 112.540951 2.051310581 0.110354 80 61 SH8159 8159 snoRNA cluster 3; snR70 26.966647 123.168411 26.966647 97.201764 62.0842055 1.792981128 0.110335 25 102 SH20797 20797 YKL157W spliced 26.648952 95.760289 61.2046205 1.786784209 0.110287 84 102 SH18034 18034 YLR316C_12_766358_765266_INTRON_230_285 3' exon 30.34137 135.520979 30.34137 106.179609 68.2604895 1.834169398 0.110275 77 104 SH16964 16964 YGR034W_7_555923_556666_INTRON_20_496 intron 58.332822 200.890453 58.332822 143.557631 100.9452265 2.004085787 0.11022 30 14 SH14445 14445 MT 21S rRNA 21S rRNA3 38.050807 153.617092 38.050807 116.566285 77.308546 1.888227505 0.110211 134 73 SH1448 1448 Leu2 tRNA 11 23 79.278873 171.41842 125.3486465 2.098119649 0.110207 150 91 SH10475 10475 RUF8 RUF8 301 320 29.571921 104.743375 67.157648 1.827095478 0.110207 152 24 SH5126 5126 snR11 snR11 231 250 24.726126 83.596459 54.1612925 1.73368902 0.110205 154 31 SH5138 5138 snR11 3' 424.516429 623.778856 524.1476425 2.719453637 0.110204 68 24 SH12528 12528 MT_ORF6 + ORF7 (hypothetical) ORF6/7 27.854312 128.130504 27.854312 101.276192 64.565252 1.80999885 0.110172 67 18 SH14497 14497 MT 21S rRNA 21S rRNA3 458.418343 1124.264111 458.418343 666.845768 562.6320555 2.750224472 0.110127 98 88 SH12199 12199 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7881 7899 25.830007 91.135984 58.4829955 1.767029609 0.110056 186 27 SH16391 16391 YER044C-A_5_239773_238459_INTRON_64_151 intron 26.128357 118.341825 26.128357 93.213468 59.6709125 1.775762679 0.110029 5 65 SH7031 7031 snR62 5' 25.990685 92.25381 59.1222475 1.771750935 0.110022 50 41 SH7002 7002 snR60 91-104 + 3' 91 26.621395 95.657392 61.1393935 1.786321126 0.109991 15 12 SH21129 21129 YNL130C spliced 25.679429 90.106523 57.892976 1.762625875 0.109959 124 11 SH8541 8541 snR19 / U1 RNA U1 201 219 24.933686 85.04224 54.987963 1.740267632 0.109944 32 35 SH3346 3346 Thr3 3' flank 24.920155 84.953201 54.936678 1.739862394 0.109898 126 35 SH2962 2962 Ser1 tRNA 41 55 24.914725 84.922156 54.9184405 1.739718196 0.109827 206 70 SH2617 2617 Pro3 tRNA-exon/intron 36 52 26.893213 96.907586 61.9003995 1.791693452 0.109806 89 47 SH1769 1769 Leu7 3' flank 684.485688 947.257333 815.8715105 2.911621768 0.109798 21 45 SH19873 19873 Negative Control 27.731222 100.742029 64.2366255 1.807782718 0.109778 34 36 SH3371 3371 Thr4 5' flank 26.934349 97.097612 62.0159805 1.792503614 0.109771 97 97 SH21596 21596 copy of SH6472 25.462508 88.64125 57.051879 1.756269952 0.109731 203 37 SH1674 1674 Leu6 5' flank 26.751247 96.26873 61.5099885 1.788945646 0.10971 96 60 SH9342 9342 RUF1 RUF1 286 302 27.239676 98.496544 62.86811 1.798430404 0.109698 3 7 SH10526 10526 RUF8 RUF8 556 570 25.580973 89.455143 57.518058 1.759804214 0.109691 147 53 SH9746 9746 RUF4 RUF4 506 520 32.863001 109.771804 71.3174025 1.853195517 0.109684 96 64 SH9499 9499 RUF2 3' 29.007985 103.70616 66.3570725 1.821887218 0.109673 157 94 SH2805 2805 Pro6 3' flank 25.194302 86.827957 56.0111295 1.748274331 0.109645 130 70 SH5076 5076 snR11 5' 66.170268 153.928389 110.0493285 2.041587397 0.109639 18 35 SH9082 9082 snR14 / U4 RNA U4 26 42 52.0182 135.276123 93.6471615 1.971494618 0.109636 36 32 SH16753 16753 YGL076C_7_365994_364333_INTRON_565_1032 intron 25.19165 111.004612 25.19165 86.812962 56.002306 1.74820591 0.109612 71 95 SH4530 4530 U3b (snR17b) U3b 206 220 102.055408 202.230578 152.142993 2.182251956 0.109605 83 61 SH21017 21017 YMR033W spliced 26.324653 94.341838 60.3332455 1.780556688 0.109584 157 99 SH3554 3554 Tyr2 tRNA-intron/exon 41 59 24.769889 83.950259 54.360074 1.735280039 0.10958 15 23 SH19093 19093 YOR312C_15_901173_900242_INTRON_2_427 intron 24.955513 109.180771 24.955513 85.225258 55.0903855 1.741075811 0.109577 189 90 SH3788 3788 RNaseP 5' flank 23.614514 76.306655 49.9605845 1.698627511 0.109516 137 11 SH9869 9869 RUF5-1 RUF5-1 151 167 26.355408 94.4872 60.421304 1.781190094 0.109503 55 22 SH16206 16206 YDR381W_4_1236547_1237993_INTRON_286_1051 5' exon 26.678206 121.633007 26.678206 95.954801 61.3165035 1.787577382 0.109469 181 33 SH16766 16766 YGL103W_7_310965_311925_INTRON_50_560 5' exon 32.437739 140.657783 32.437739 109.220044 70.8288915 1.850210445 0.109464 120 55 SH3087 3087 Ser3 3' flank 29.090072 103.873803 66.4819375 1.822703668 0.10946 119 86 SH21504 21504 copy of SH2796 167.578134 288.943565 228.2608495 2.358431429 0.109451 186 92 SH4091 4091 SRP RNA SRP RNA 346 362 32.839103 109.754922 71.2970125 1.853071332 0.109407 189 42 SH9590 9590 RUF3 RUF3 336 355 25.119579 86.34747 55.7335245 1.746116508 0.109379 95 102 SH858 858 Glu2 tRNA 56 68 27.461019 99.535627 63.498323 1.802762256 0.10936 7 57 SH9111 9111 snR14 / U4 RNA 3' 25.065133 85.986116 55.5256245 1.744493452 0.109321 61 55 SH7596 7596 snR189 snR189 51 67 28.376985 102.521982 65.4494835 1.815906224 0.109283 180 34 SH2127 2127 Met1 tRNA 21 35 32.29775 109.04696 70.672355 1.849249563 0.10921 192 51 SH14240 14240 MT tRNA Ser 5' 23.906772 101.090731 23.906772 78.183959 51.0453655 1.707956318 0.109165 155 78 SH19884 19884 Negative Control 27.242413 98.551884 62.8971485 1.798630957 0.109144 200 53 SH1334 1334 Ile3 tRNA-intron 51 66 26.455639 94.969503 60.712571 1.783278624 0.109128 178 29 SH7305 7305 snR66 snR66 16 32 122.058477 229.138207 175.598342 2.244520411 0.109109 108 88 SH12330 12330 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.035344 109.840224 25.035344 85.80488 55.420112 1.743667399 0.109105 146 86 SH21063 21063 YMR201C spliced 29.045309 103.808801 66.427055 1.822344999 0.109097 70 58 SH12190 12190 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7836 7853 156.216869 274.083734 215.1503015 2.332741959 0.109075 206 49 SH2685 2685 Pro4 91-102 + 3' flank 91 61.009057 147.144511 104.076784 2.017353864 0.108967 39 21 SH4684 4684 snR4 5' 22.828552 71.570851 47.1997015 1.673939252 0.108903 68 96 SH7001 7001 snR60 snR60 86 101 25.615556 89.767626 57.691591 1.761112516 0.108873 174 96 SH19642 19642 RNA14 2.2 27.7877 101.074827 64.4312635 1.809096648 0.108852 124 25 SH15859 15859 YDL079C_4_314747_312950_INTRON_413_704 intron 26.442478 120.37317 26.442478 94.930692 60.686585 1.783092699 0.108847 49 3 SH19248 19248 YPL129W_16_305297_306136_INTRON_10_114 exon/intron 25.737888 115.350604 25.737888 90.612716 58.175302 1.764738646 0.108843 88 84 SH2338 2338 Phe3 tRNA 16 28 74.515702 165.168965 119.8423335 2.078610257 0.108808 11 59 SH12436 12436 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.656145 121.562675 26.656145 95.90653 61.2813375 1.787328235 0.108777 123 56 SH20294 20294 YDR500C spliced 27.189991 98.342908 62.7664495 1.797727563 0.108747 142 73 SH3158 3158 Ser5 5' flank 26.573322 95.534842 61.054082 1.785714706 0.108713 31 41 SH964 964 Gly1 71-72 + 3' flank 71 24.589073 82.793382 53.6912275 1.729903333 0.108707 184 41 SH5201 5201 snR13 3' 26.009213 92.513544 59.2613785 1.77277175 0.108643 142 88 SH11883 11883 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6301 6319 136.739863 248.602232 192.6710475 2.284816459 0.108604 182 92 SH18850 18850 YNL312W_14_48286_49215_INTRON_8_115 3' exon 103.295786 306.319678 103.295786 204.023892 153.659839 2.186560374 0.108599 94 97 SH8892 8892 LSR1 / U2 RNA U2 1101 1113 27.605017 100.25707 63.9310435 1.805711793 0.10858 203 53 SH4583 4583 U3b (snR17b) 3' 24.230722 80.393213 52.3119675 1.718601055 0.1085 204 35 SH14478 14478 MT 21S rRNA 21S rRNA3 403.231421 999.468692 403.231421 597.237271 500.234346 2.699173507 0.108476 26 60 SH2813 2813 Pro6 3' flank 24.334001 81.089618 52.7118095 1.721907925 0.108462 204 62 SH15733 15733 YBR230C_2_680008_679507_INTRON_12_108 intron 24.142779 102.951846 24.142779 79.809067 51.975923 1.71580221 0.108455 213 90 SH674 674 Gln3 5' flank 24.534351 82.443777 53.489064 1.728264998 0.108453 142 42 SH7605 7605 snR189 snR189 96 113 24.336797 81.110958 52.7238775 1.722007342 0.108432 174 68 SH20135 20135 YDL083C spliced 26.040312 92.752838 59.396575 1.773761403 0.108409 33 22 SH21794 21794 copy of SH14859 26.146399 93.495238 59.8208185 1.776852351 0.108406 201 21 SH9407 9407 RUF1 3' 23.381218 74.958646 49.169932 1.691699608 0.108375 75 74 SH11080 11080 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2286 2303 12546.68112 12349.00006 12447.84059 4.095094018 0.108369 163 103 SH7995 7995 snoRNA cluster 2 intergenic 27.467327 126.111214 27.467327 99.643887 63.555607 1.803153871 0.108344 157 33 SH11137 11137 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2571 2588 21285.94054 19659.11132 20472.52593 4.31117143 0.108311 95 71 SH2661 2661 Pro4 5' flank 24.958433 85.363035 55.160734 1.741630037 0.108259 144 86 SH9386 9386 RUF1 RUF1 506 523 26.505714 95.263379 60.8845465 1.784507076 0.108236 125 72 SH17449 17449 YIL148W_9_68708_69528_INTRON_9_442 intron 26.12806 118.515495 26.12806 93.387435 59.7577475 1.776394219 0.10819 128 46 SH8672 8672 LSR1 / U2 RNA U2 1 17 24.772326 84.093039 54.4326825 1.735859737 0.108145 181 86 SH16825 16825 YGL178W_7_167356_170575_INTRON_4_643 intron 1668.072895 3764.554658 1668.072895 2097.481763 1882.777329 3.27479896 0.108082 125 16 SH7241 7241 snR65 5' 25.961129 92.232747 59.096938 1.771564979 0.108071 119 21 SH8054 8054 snoRNA cluster 2 intergenic 26.181891 118.958353 26.181891 93.776462 59.9791765 1.778000499 0.10807 199 9 SH14436 14436 MT 21S rRNA 21S rRNA3 26.346638 119.900921 26.346638 94.554283 60.4504605 1.781399614 0.108062 193 18 SH2653 2653 Pro4 5' flank 25.87972 91.667687 58.7737035 1.769183058 0.10806 23 29 SH16837 16837 YGL178W_7_167356_170575_INTRON_4_643 intron 24.45094 105.369252 24.45094 81.918312 53.184626 1.72578611 0.107993 159 24 SH5533 5533 snR33 5' 24.657323 83.32101 53.9891665 1.732306623 0.107983 17 40 SH2424 2424 Phe4 3' flank 27.471097 99.690599 63.580848 1.803326316 0.107968 52 22 SH1738 1738 Leu7 5' flank - tRNA3 3 26.989276 97.488428 62.238852 1.794061573 0.107933 194 82 SH11183 11183 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2801 2814 26.033281 92.751739 59.39251 1.773731679 0.107904 184 78 SH19384 19384 YPR043W_16_654161_654842_INTRON_3_405 intron 43.890207 167.486303 43.890207 124.596096 84.2431515 1.925534605 0.107881 7 77 SH5677 5677 snR34 snR34 306 325 84.447399 178.633207 131.540303 2.119058838 0.107855 98 22 SH6206 6206 snR40 91-97 + 3' 91 24.888602 84.918667 54.9036345 1.739601095 0.107842 23 15 SH21841 21841 copy of SH17171 47.818163 129.832905 88.825534 1.948537827 0.107833 18 71 SH3469 3469 Trp1 3' flank 49.992792 132.695947 91.3443695 1.960681782 0.107832 20 64 SH3352 3352 Thr3 3' flank 27.391811 99.338254 63.3650325 1.801849662 0.107824 34 17 SH19487 19487 YPT1 52.122226 135.543234 93.83273 1.972354352 0.107822 66 85 SH1497 1497 Leu3 5' flank 25.989208 92.452052 59.22063 1.772473023 0.107821 114 63 SH3943 3943 RNase MRP RNaseMRP 131 153 23.922103 78.395572 51.1588375 1.708920667 0.107818 80 49 SH20582 20582 YHR016C spliced 29.510142 104.759975 67.1350585 1.826949372 0.107814 87 6 SH1828 1828 Leu8 3' flank 25.824851 91.311114 58.5679825 1.767660264 0.107804 145 40 SH17226 17226 YHR077C_8_255757_252375_INTRON_7_119 5' exon 24.87845 108.731122 24.87845 84.852672 54.865561 1.739299824 0.107798 126 19 SH19576 19576 AEP2/ATP13 0.6 25.900263 91.83745 58.8688565 1.7698856 0.107772 55 25 SH2720 2720 Pro5 5' flank 30.482061 106.583968 68.5330145 1.835899835 0.107748 164 90 SH1098 1098 Gly4 5' flank 34.410817 111.916545 73.163681 1.864295548 0.107747 146 52 SH20734 20734 YJL189W spliced 30.654425 106.896127 68.775276 1.837432342 0.107744 176 28 SH18555 18555 YMR230W_13_732413_733140_INTRON_53_462 3' exon 92.29434 280.529223 92.29434 189.234883 140.7646115 2.148493486 0.107726 42 57 SH9146 9146 snR7 U5 RNA U5 1 17 29.460208 104.671037 67.0656225 1.82649996 0.107718 198 70 SH1716 1716 Leu6 3' flank 26.626491 95.859601 61.243046 1.787056783 0.107608 148 66 SH11228 11228 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3026 3046 28.948047 103.710235 66.329141 1.821704373 0.107528 69 58 SH17440 17440 YIL133C_9_99416_98527_INTRON_32_321 intron 24.834795 108.415683 24.834795 84.580888 54.7078415 1.73804958 0.107476 42 91 SH14722 14722 MT tRNA cys; tRNA his tRNA Cys 24.285916 104.137711 24.285916 80.851795 52.5688555 1.720728522 0.107453 207 64 SH6394 6394 snR43 3' 23.89488 78.245605 51.0702425 1.70816792 0.107451 6 95 SH15630 15630 YBR181C_2_592732_591670_INTRON_7_358 intron/exon 26.29699 119.671439 26.29699 94.374449 60.3357195 1.780574496 0.10745 206 26 SH20381 20381 YFL034C-A spliced 37.850431 116.453807 77.152119 1.887347859 0.107389 117 90 SH3337 3337 Thr3 tRNA 31 47 32.5232 109.444355 70.9837775 1.851159107 0.10737 213 74 SH16370 16370 YER003C_5_159117_157735_INTRON_32_124 5' exon 25.975681 117.37978 25.975681 92.404099 59.18989 1.772247533 0.107332 89 91 SH15432 15432 YBL072C_2_89435_88518_INTRON_1_308 intron 25.003549 109.752568 25.003549 85.749019 55.376284 1.743323809 0.107312 21 26 SH16567 16567 YER133W_5_432491_433954_INTRON_178_702 intron 42.442392 164.13441 42.442392 122.692018 82.567205 1.916807583 0.10727 165 56 SH17510 17510 YJL136C_10_156971_156248_INTRON_25_484 intron 30.639147 136.53941 30.639147 106.900263 68.769705 1.837397161 0.107257 122 66 SH18886 18886 YOL047C_15_242745_241612_INTRON_244_306 intron 26.423797 120.390915 26.423797 94.967118 60.6954575 1.783156189 0.10722 133 71 SH8787 8787 LSR1 / U2 RNA U2 576 593 24.489967 82.24951 53.3697385 1.727295075 0.107214 17 88 SH21861 21861 copy of SH18011 27.822572 101.366956 64.594764 1.810197316 0.107194 30 31 SH14383 14383 MT ORF9 and ORF10 (hypothetical) 3' 22.832895 93.553935 22.832895 71.72104 47.2769675 1.674649612 0.107185 214 29 SH19363 19363 YPR028W_16_623522_624197_INTRON_52_184 intron 24.852832 108.585941 24.852832 84.733109 54.7929705 1.738724846 0.107158 125 53 SH20729 20729 YJL177W spliced 31.257391 107.75447 69.5059305 1.842021862 0.107118 117 27 SH4593 4593 U3b (snR17b) 3' 28.214249 102.328788 65.2715185 1.814723716 0.107077 66 16 SH11274 11274 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3256 3273 35.191042 112.99266 74.091851 1.869770445 0.107074 184 98 SH20267 20267 YDR424C spliced 24.544265 82.6326 53.5884325 1.729071054 0.107046 160 102 SH15194 15194 MT COX3 cox3 26.028778 117.831343 26.028778 92.802565 59.4156715 1.77390101 0.10704 39 80 SH17581 17581 YJL191W_10_73786_74610_INTRON_11_418 intron 22.998337 94.728299 22.998337 72.729962 47.8641495 1.680010346 0.107016 22 32 SH2840 2840 Pro7 tRNA 6 22 391.981346 583.324017 487.6526815 2.688110617 0.106997 128 70 SH1388 1388 Leu1 tRNA 11 23 73.942941 164.557767 119.250354 2.076459677 0.106991 20 8 SH12521 12521 MT_ORF6 + ORF7 (hypothetical) ORF6/7 25.744424 115.576362 25.744424 90.831938 58.288181 1.765580502 0.106973 180 11 SH18975 18975 YOR096W_15_505793_506766_INTRON_145_545 intron 25.532422 113.903885 25.532422 89.371463 57.4519425 1.759304717 0.106973 154 42 SH9742 9742 RUF4 RUF4 486 503 25.122004 86.577429 55.8497165 1.747020973 0.106971 19 16 SH18750 18750 YNL162W_14_331319_332151_INTRON_5_516 intron 29.572795 133.498288 29.572795 104.925493 67.249144 1.827686761 0.106964 177 98 SH10820 10820 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 986 1005 113.69098 218.274289 165.9826345 2.220062653 0.106927 185 7 SH8514 8514 snR19 / U1 RNA U1 66 88 24.165044 80.086439 52.1257415 1.717052246 0.106917 3 65 SH6344 6344 snR43 5' 24.00297 79.006526 51.504748 1.711847267 0.106909 8 36 SH19899 19899 snR17B spliced 25.66893 90.31767 57.9933 1.763377822 0.106896 74 97 SH3644 3644 Val2 5' flank 24.301863 81.008982 52.6554225 1.721443102 0.106863 76 101 SH10166 10166 RUF6 RUF6 676 688 46.171379 127.684538 86.9279585 1.93915948 0.10686 175 3 SH6069 6069 snR37 snR37 261 279 32.184641 109.020443 70.602542 1.848820338 0.106846 208 65 SH12400 12400 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.932416 117.084626 25.932416 92.15221 59.042313 1.771163363 0.106808 128 59 SH2836 2836 Pro7 5' flank - tRNA3 3 56.40271 141.265695 98.8342025 1.994907262 0.106796 41 25 SH820 820 Glu1 3' flank 25.5578 89.562784 57.560292 1.760122988 0.106787 21 15 SH12487 12487 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 23.07516 95.288514 23.07516 73.213354 48.144257 1.682544489 0.106767 65 59 SH10849 10849 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1131 1153 682.132872 946.270668 814.20177 2.910732042 0.106746 97 27 SH7331 7331 snR66 3' 24.260277 80.739483 52.49988 1.720158311 0.106744 156 43 SH8023 8023 snoRNA cluster 2 snR55 24.982753 109.641899 24.982753 85.659146 55.3209495 1.742889626 0.106744 53 76 SH15866 15866 YDL079C_4_314747_312950_INTRON_413_704 intron 26.491768 120.806693 26.491768 95.314925 60.9033465 1.784641157 0.106699 11 94 SH2924 2924 Pro8 3' flank 24.74718 84.050393 54.3987865 1.735589212 0.10667 123 84 SH5475 5475 snR32 snR32 36 56 24.953888 85.472225 55.2130565 1.74204179 0.106665 37 85 SH12478 12478 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 1317.67601 3016.605788 1317.67601 1699.929778 1508.802894 3.178632508 0.106661 113 88 SH181 181 Arg2 21-33 21 33 36.973354 115.34028 76.156817 1.881708784 0.106661 108 38 SH21505 21505 copy of SH2797 31.355049 107.912372 69.6337105 1.842819538 0.106639 121 104 SH8198 8198 snoRNA cluster 3; intergenic 27.787319 128.036231 27.787319 101.248912 64.5181155 1.809681674 0.106636 125 40 SH11458 11458 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4176 4192 270.274275 424.150685 347.21248 2.540595327 0.106629 68 59 SH7111 7111 snR63 snR63 61 78 26.580249 95.728783 61.154516 1.786428533 0.106548 36 69 SH21853 21853 copy of SH17603 23.440784 75.46542 49.453102 1.694193538 0.106517 162 38 SH11488 11488 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4326 4343 67.10817 155.446722 111.277446 2.046407149 0.106515 185 29 SH2855 2855 Pro7 tRNA 81 95 30.613904 106.900484 68.757194 1.837318145 0.106484 38 42 SH8904 8904 LSR1 / U2 RNA 1161-1175 + 3' 1161 24.52677 82.563219 53.5449945 1.728718878 0.106473 155 87 SH20144 20144 YDL108W spliced 1375.340602 1766.800352 1571.070477 3.196195668 0.106445 149 26 SH836 836 Glu2 5' flank 25.152033 86.828828 55.9904305 1.748113807 0.106427 166 69 SH21206 21206 YOL127W spliced 28.209555 102.355065 65.28231 1.814795513 0.106427 83 78 SH15632 15632 YBR181C_2_592732_591670_INTRON_7_358 3' exon 52.20529 186.958386 52.20529 135.753096 93.979193 1.973031711 0.106424 32 48 SH21082 21082 YMR292W spliced 28.483365 102.883051 65.683208 1.817454356 0.106407 15 14 SH1524 1524 Leu3 tRNA 91 108 25.664753 90.345737 58.005245 1.763467265 0.106282 128 17 SH2223 2223 Phe1 5' flank - tRNA7 7 26.322019 94.57479 60.4484045 1.781384842 0.10628 18 83 SH2309 2309 Phe2 3' flank 26.239926 94.206001 60.2229635 1.779762123 0.106227 185 86 SH2413 2413 Phe4 3' flank 24.569974 82.8801 53.725037 1.730176723 0.106207 139 9 SH7576 7576 snR189 5' 26.093861 93.337755 59.715808 1.776089313 0.106206 167 58 SH20695 20695 YIL148W spliced 29.576332 104.975062 67.275697 1.827858206 0.106194 142 33 SH7434 7434 snR69 snR69 71 88 44.458599 125.45887 84.9587345 1.929208035 0.106164 158 100 SH9267 9267 RUF1 5' 45.17236 126.400059 85.7862095 1.933417479 0.106136 151 29 SH6573 6573 snR47 5' 27.482237 99.887621 63.684929 1.804036669 0.106105 121 58 SH7475 7475 snR71 5' - 11 -9 11 23.460902 75.622242 49.541572 1.694969783 0.106084 21 44 SH20022 20022 YBR119W spliced 27.784152 101.278919 64.5315355 1.809771999 0.106075 72 82 SH17485 17485 YJL024C_10_396288_395627_INTRON_23_99 intron 24.416142 105.264515 24.416142 81.848373 53.1322575 1.725358269 0.106062 102 68 SH2625 2625 Pro3 tRNA 76 88 60.647675 146.888059 103.767867 2.01606289 0.106045 166 53 SH13985 13985 MT COB intronic 30.545676 136.34515 30.545676 106.799474 68.672575 1.836783332 0.10603 125 54 SH8701 8701 LSR1 / U2 RNA U2 146 163 25.654949 90.303311 57.97913 1.763271694 0.10601 152 2 SH535 535 Cys1 5' flank 31.045191 107.523512 69.2843515 1.840635156 0.10599 164 74 SH5379 5379 snR31 5' 24.393372 81.702964 53.048168 1.72467039 0.105961 86 3 SH16681 16681 YGL030W_7_439087_439634_INTRON_4_233 intron 31.638841 138.971725 31.638841 108.332884 69.9858625 1.845010319 0.105957 124 101 SH6462 6462 snR45 156-172 + 3' 156 22.976153 72.673524 47.8248385 1.679653512 0.105957 123 2 SH21645 21645 copy of SH8560 26.931288 97.37514 62.153214 1.793463591 0.105951 210 30 SH8080 8080 snoRNA cluster 2 snR61/3' 25.412878 113.059611 25.412878 88.646733 57.0298055 1.75610189 0.105943 12 100 SH8719 8719 LSR1 / U2 RNA U2 236 255 25.909503 92.077947 58.993725 1.770805819 0.105905 182 48 SH20031 20031 YBR181C spliced 25.251489 87.550572 56.4010305 1.751287039 0.105899 6 23 SH5107 5107 snR11 snR11 136 151 26.111114 93.491926 59.80152 1.776712223 0.10586 128 4 SH8544 8544 snR19 / U1 RNA U1 216 233 25.039008 86.116941 55.5779745 1.744902715 0.105846 192 26 SH12171 12171 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7741 7764 24.024395 79.238186 51.6312905 1.71291298 0.105832 50 51 SH6233 6233 snR42 5' 28.71917 103.367935 66.0435525 1.819830426 0.105806 180 24 SH11462 11462 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4196 4212 93.011237 190.40781 141.7095235 2.151399038 0.105784 91 64 SH20364 20364 YER131W spliced 99.773026 199.608725 149.6908755 2.175195328 0.105728 199 36 SH4836 4836 snR8 5' 24.368316 81.555795 52.9620555 1.723964832 0.105702 99 23 SH885 885 Glu3 5' flank 31.755596 108.504798 70.130197 1.845905059 0.105687 128 5 SH21294 21294 YPL175W spliced 43.56629 124.303367 83.9348285 1.923942207 0.105685 213 102 SH3314 3314 Thr3 5' flank 25.541994 89.557432 57.549713 1.760043162 0.105663 101 39 SH19748 19748 Negative Control 31.764771 108.519839 70.142305 1.845980033 0.105636 210 85 SH6821 6821 snR52 snR52 11 28 12841.86253 12626.54373 12734.20313 4.104971773 0.105632 201 9 SH7982 7982 snoRNA cluster 2 snR57 59.507769 203.952068 59.507769 145.444299 102.476034 2.010622309 0.105624 180 36 SH8153 8153 snoRNA cluster 3; intergenic/snR70 23.638957 99.399928 23.638957 76.760971 50.199964 1.700703406 0.105592 15 32 SH17292 17292 YHR141C_8_382752_381991_INTRON_5_445 intron 26.750011 122.325594 26.750011 96.575583 61.662797 1.79002322 0.105579 45 77 SH19451 19451 CYC1 30.125597 106.043599 68.084598 1.833048878 0.105543 195 2 SH6777 6777 snR50 snR50 61 78 28.778036 103.496725 66.1373805 1.82044699 0.105511 108 94 SH21817 21817 copy of SH15702 29.950853 105.718647 67.83475 1.831452229 0.105499 202 49 SH21304 21304 YPL218W spliced 35.505894 113.497582 74.501738 1.872166404 0.105464 72 91 SH18635 18635 YNL096C_14_444312_443395_INTRON_145_489 intron 26.568933 121.327862 26.568933 95.758929 61.163931 1.78649539 0.105461 69 21 SH3889 3889 RNaseP 3' 26.31 94.587233 60.4486165 1.781386366 0.105376 156 100 SH5042 5042 snR10 241-245 + 3' 241 26.966265 97.579459 62.272862 1.794298826 0.10537 108 10 SH17203 17203 YHR039C-A_8_187670_187164_INTRON_4_165 5' exon 24.19733 103.630158 24.19733 80.432828 52.315079 1.718626885 0.105368 106 12 SH3819 3819 RNaseP RNaseP 61 73 285.023786 443.97383 364.498808 2.561696112 0.105348 9 5 SH3651 3651 Val2 5' flank - tRNA12 12 41.396566 121.386841 81.3917035 1.910580138 0.105345 74 57 SH16334 16334 YDR471W_4_1401759_1402553_INTRON_32_415 3' exon 27.324148 125.549964 27.324148 99.225816 63.274982 1.80123203 0.105284 132 4 SH3203 3203 Ser5 3' flank 76.684854 168.426461 122.5556575 2.088333364 0.105282 80 24 SH4821 4821 snR5 3' 25.928937 92.277845 59.103391 1.771612399 0.105224 76 69 SH9882 9882 RUF5-1 RUF5-1 216 230 25.838342 91.64718 58.742761 1.768954355 0.105221 27 73 SH8247 8247 snoRNA cluster4 5' 25.240333 111.776524 25.240333 87.536191 56.388262 1.751188709 0.105214 99 45 SH4748 4748 snR5 5' 36.42241 114.711846 75.567128 1.878332917 0.105182 124 51 SH6269 6269 snR42 snR42 126 146 23.81119 77.878535 50.8448625 1.706247077 0.105176 134 77 SH4509 4509 U3b (snR17b) U3b 101 117 29.510448 104.909463 67.2099555 1.827433608 0.105138 98 31 SH13060 13060 MT COX1 cox1ai2/intronic 24.085857 102.794862 24.085857 79.709005 51.897431 1.71514586 0.105099 100 64 SH735 735 Gln4 5' flank 34.406528 112.057246 73.231887 1.864700225 0.105075 138 23 SH1625 1625 Leu5 5' flank - tRNA9 9 33.355363 110.668439 72.011901 1.857404276 0.105009 198 34 SH686 686 Gln3 5' flank 26.557667 95.743237 61.150452 1.786399672 0.104987 179 91 SH12172 12172 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7746 7769 24.381702 81.707916 53.044809 1.72464289 0.10498 151 32 SH4550 4550 U3b (snR17b) U3b 306 328 25.485292 89.231766 57.358529 1.758598005 0.104968 53 39 SH20500 20500 YGR001C spliced 26.094254 93.461353 59.7778035 1.776539953 0.104945 93 73 SH10718 10718 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 476 493 24.997541 85.917205 55.457373 1.743959293 0.104943 77 18 SH6460 6460 snR45 snR45 146 165 25.770758 91.203973 58.4873655 1.767062059 0.104942 84 69 SH9553 9553 RUF3 RUF3 151 167 41.975606 122.204353 82.0899795 1.914290147 0.104917 100 52 SH10889 10889 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1331 1348 227.166898 368.074975 297.6209365 2.473663479 0.104802 99 67 SH4662 4662 snR3 3' 24.693668 83.847757 54.2707125 1.734565523 0.104801 188 30 SH16392 16392 YER044C-A_5_239773_238459_INTRON_64_151 intron 24.314281 104.582955 24.314281 81.268674 52.7914775 1.722563817 0.104789 173 21 SH16306 16306 YDR450W_4_1359912_1360787_INTRON_48_482 intron 32.060006 140.022697 32.060006 108.962691 70.5113485 1.84825902 0.104772 128 75 SH15684 15684 YBR191W_2_606228_607098_INTRON_12_399 intron 29.059621 132.134544 29.059621 104.074923 66.567272 1.823260759 0.104767 10 73 SH4118 4118 SRP RNA SRP RNA 481 493 31.608005 108.354244 69.9811245 1.844980917 0.104752 70 49 SH12288 12288 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.446085 126.276025 27.446085 99.82994 63.6380125 1.803716608 0.10472 35 22 SH13004 13004 MT COX1 COX1ai2 26.587064 121.484964 26.587064 95.8979 61.242482 1.787052783 0.104712 173 39 SH5112 5112 snR11 snR11 161 183 25.042238 86.239973 55.6411055 1.74539575 0.104701 83 39 SH19942 19942 YBL040C spliced 25.804292 91.461854 58.633073 1.768142656 0.104674 214 77 SH2008 2008 Lys3 5' flank - tRNA2 2 27.752336 101.251799 64.5020675 1.809573635 0.104571 167 17 SH7474 7474 snR71 5' - 5 -14 5 23.709516 77.279516 50.494516 1.703244214 0.104565 110 79 SH7354 7354 snR68 5' - 10 -9 10 23.648879 76.903066 50.2759725 1.70136048 0.104554 5 75 SH20079 20079 YCR031C spliced 25.378119 88.543274 56.9606965 1.755575291 0.104466 38 96 SH17044 17044 YGR214W_7_920570_921783_INTRON_91_545 5' exon 29.763779 134.190782 29.763779 105.427003 67.595391 1.829917085 0.104428 190 4 SH19481 19481 ADH1 28.934982 103.856142 66.395562 1.822139051 0.104427 65 33 SH14244 14244 MT tRNA Ser tRNA 24.408406 105.350032 24.408406 81.941626 53.175016 1.725707629 0.104362 50 17 SH12422 12422 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.749941 108.024298 24.749941 84.274357 54.512149 1.736493303 0.104342 81 92 SH21468 21468 copy of SH1004 25.821884 91.617243 58.7195635 1.768782819 0.104322 197 2 SH5832 5832 snR35 snR35 346 363 26.435161 95.235155 60.835158 1.78415464 0.104321 84 96 SH392 392 Asn1 41-55 41 55 129.253053 239.338232 184.2956425 2.265515067 0.104303 34 38 SH21747 21747 copy of SH12762 133.911225 245.501621 189.706423 2.278082035 0.104275 4 36 SH14925 14925 MT tRNA Asn 5' 23.715011 100.053034 23.715011 77.338023 50.526517 1.703519362 0.104254 212 88 SH12445 12445 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 43.036847 165.721514 43.036847 123.684667 83.360757 1.92096165 0.104237 79 68 SH20917 20917 YLR344W spliced 26.245592 94.380287 60.3129395 1.780410495 0.104219 97 21 SH13644 13644 MT ATP6 ATP6 23.975038 102.018905 23.975038 79.043867 51.5094525 1.711886934 0.104211 186 68 SH15914 15914 YDL083C_4_307788_306925_INTRON_25_456 intron 27.692426 127.698268 27.692426 101.005842 64.349134 1.808542707 0.104189 166 14 SH10429 10429 RUF8 RUF8 71 88 24.154008 80.24167 52.197839 1.717652524 0.104185 29 85 SH9953 9953 RUF5-1 RUF5-1 571 587 27.848312 101.728524 64.788418 1.811497375 0.104145 3 21 SH21197 21197 YOL121C spliced 25.967887 92.658427 59.313157 1.77315104 0.10408 123 79 SH6 6 Ala1 5' flank 24.7604 84.371375 54.5658875 1.736921223 0.104058 101 51 SH20672 20672 YIL069C spliced 28.257311 102.578513 65.417912 1.815696678 0.104012 10 56 SH18623 18623 YNL096C_14_444312_443395_INTRON_145_489 intron 22.943448 94.563136 22.943448 72.619688 47.781568 1.679260397 0.103993 179 29 SH10482 10482 RUF8 RUF8 336 350 100.270949 200.48587 150.3784095 2.177185487 0.103978 203 15 SH7988 7988 snoRNA cluster 2 snR57/intergenic 26.580618 121.505792 26.580618 95.925174 61.252896 1.787126627 0.103959 83 84 SH5095 5095 snR11 snR11 76 88 1541.457842 1960.062342 1750.760092 3.243226638 0.103957 156 62 SH11092 11092 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2346 2359 26.891077 97.345013 62.118045 1.793217779 0.103938 95 51 SH10290 10290 RUF7 RUF7 61 80 26.098996 93.592625 59.8458105 1.777033753 0.103924 212 13 SH21334 21334 YPR063C spliced 24.847255 84.984783 54.916019 1.739699047 0.10389 122 64 SH2659 2659 Pro4 5' flank 24.919031 85.484578 55.2018045 1.741953275 0.103851 93 37 SH20886 20886 YLR275W spliced 24.146126 80.219437 52.1827815 1.717527225 0.10382 98 102 SH3921 3921 RNase MRP RNaseMRP 21 38 28.889569 103.803056 66.3463125 1.82181679 0.103817 141 72 SH2973 2973 Ser1 3' flank 24.307165 81.304179 52.805672 1.722680574 0.103807 128 44 SH16784 16784 YGL103W_7_310965_311925_INTRON_50_560 intron 24.827376 108.68288 24.827376 84.855504 54.84144 1.73910885 0.103801 162 20 SH1260 1260 Ile2 5' flank - tRNA12 12 30.037154 105.977357 68.0072555 1.832555249 0.103775 70 19 SH10433 10433 RUF8 RUF8 91 108 24.72271 84.138187 54.4304485 1.735841913 0.103764 159 96 SH19133 19133 YPL075W_16_412249_415357_INTRON_9_759 intron 24.663233 107.398041 24.663233 83.734808 54.1990205 1.733991438 0.10371 199 63 SH2979 2979 Ser1 3' flank 24.039279 79.51809 51.7786845 1.714151012 0.103657 133 101 SH7143 7143 snR63 snR63 221 238 36.938379 115.467512 76.2029455 1.881971759 0.103611 133 76 SH1589 1589 Leu4 3' flank 23.198594 74.20076 48.699677 1.687526081 0.103594 55 54 SH18642 18642 YNL112W_14_413636_416278_INTRON_1274_2275 5' exon 27.257115 125.307381 27.257115 99.050266 63.1536905 1.800398734 0.103584 63 83 SH7504 7504 snR71 3' 23.906978 78.644016 51.275497 1.709909879 0.103573 46 46 SH10228 10228 RUF6 RUF6 986 1005 22.676097 71.043127 46.859612 1.670798688 0.103546 39 4 SH19132 19132 YPL075W_16_412249_415357_INTRON_9_759 intron 24.911162 109.369529 24.911162 85.458367 55.1847645 1.741819194 0.103534 110 82 SH12246 12246 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.223196 125.123289 27.223196 98.900093 63.0616445 1.799765292 0.103512 119 36 SH14979 14979 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 26.084549 118.615948 26.084549 93.531399 59.807974 1.776759091 0.103504 147 30 SH18852 18852 YNR053C_14_723108_721117_INTRON_811_1341 5' exon 25.667706 115.29405 25.667706 90.626344 58.147025 1.7645275 0.103479 123 43 SH21030 21030 YMR116C spliced 27.696416 101.081039 64.3887275 1.808809842 0.103473 111 76 SH4234 4234 telomerase RNA telomerase 206 222 23.481031 75.946247 49.713639 1.696475554 0.103471 99 47 SH5005 5005 snR10 snR10 56 68 40.668263 120.531181 80.599722 1.906333544 0.103467 5 16 SH6401 6401 snR43 3' 23.228168 74.391805 48.8099865 1.688508688 0.103459 76 88 SH18070 18070 YLR344W_12_819312_820142_INTRON_20_466 intron 453.230989 1115.3773 453.230989 663.146311 558.18865 2.746781001 0.103458 73 77 SH3879 3879 RNaseP 361-369 + 3' 361 40.140036 119.822032 79.981034 1.902987014 0.103456 138 68 SH5559 5559 snR33 snR33 81 97 107.519787 210.400597 158.960192 2.201288379 0.103436 21 103 SH4490 4490 U3b (snR17b) U3b 6 23 24.661245 83.746621 54.203933 1.7340308 0.103419 24 69 SH1698 1698 Leu6 tRNA 56 68 93.806805 191.73456 142.7706825 2.154639036 0.103398 36 36 SH18613 18613 YNL069C_14_494998_493953_INTRON_29_477 intron 27.007078 123.925921 27.007078 97.918843 62.4629605 1.795622564 0.103381 121 23 SH9578 9578 RUF3 RUF3 276 293 29.897646 105.741029 67.8193375 1.831353543 0.103319 53 88 SH659 659 Gln2 3' flank 24.111995 80.035428 52.0737115 1.716618533 0.103286 207 48 SH14226 14226 MT ATP9 ATP9 24.286672 104.498765 24.286672 81.212093 52.7493825 1.72221738 0.103263 142 76 SH9570 9570 RUF3 RUF3 236 257 24.740419 84.305633 54.523026 1.736579951 0.103245 157 47 SH8750 8750 LSR1 / U2 RNA U2 391 406 24.736085 84.277306 54.5066955 1.736449853 0.103228 125 87 SH2981 2981 Ser1 3' flank 23.569782 76.516387 50.0430845 1.69934407 0.103204 64 32 SH13276 13276 MT COX1 Exon 5a 26.299328 120.002192 26.299328 94.702864 60.501096 1.781763242 0.103166 166 32 SH3318 3318 Thr3 5' flank 24.752982 84.400942 54.576962 1.737009357 0.103144 145 19 SH9215 9215 snR6 / U6 RNA 5' 24.844379 85.033303 54.938841 1.739879493 0.103121 108 11 SH7201 7201 snR64 snR64 71 87 54.566139 139.101461 96.8338 1.986026975 0.103117 31 70 SH17971 17971 YLR185W_12_522665_523290_INTRON_8_366 intron/exon 25.5002 114.007756 25.5002 89.507556 57.503878 1.759697134 0.103077 56 35 SH20966 20966 YML026C spliced 25.6333 90.43165 58.032475 1.763671093 0.103013 97 43 SH13975 13975 MT COB cytbi3/intron 25.980532 117.83061 25.980532 92.850078 59.415305 1.773898331 0.102996 166 80 SH11719 11719 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5481 5496 345.541308 524.384553 434.9629305 2.638452246 0.102993 144 49 SH21282 21282 YPL143W spliced 36.545516 114.998572 75.772044 1.879509003 0.102922 81 62 SH14970 14970 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 29.96648 134.861796 29.96648 105.895316 67.930898 1.832067356 0.102875 124 98 SH7483 7483 snR71 snR71 31 50 25.57678 90.05617 57.816475 1.76205161 0.102851 182 52 SH18068 18068 YLR344W_12_819312_820142_INTRON_20_466 intron 58.517406 201.882785 58.517406 144.365379 101.4413925 2.006215202 0.102821 175 103 SH9478 9478 RUF2 RUF2 231 247 26.304377 94.751777 60.528077 1.781956876 0.102817 113 5 SH6378 6378 snR43 snR43 131 145 33.61314 111.124015 72.3685775 1.859550036 0.102802 131 10 SH4242 4242 telomerase RNA telomerase 246 262 31.628074 108.484598 70.056336 1.84544742 0.102784 79 11 SH3827 3827 RNaseP RNaseP 101 113 31.642939 108.507004 70.0749715 1.84556293 0.102741 134 48 SH94 94 Ala2 3' flank 27.860442 101.880149 64.8702955 1.812045876 0.102717 2 20 SH5392 5392 snR31 snR31 26 42 30.216815 106.37466 68.2957375 1.834393599 0.102698 34 59 SH3808 3808 RNaseP RNaseP 6 22 27.156523 98.658149 62.907336 1.798701294 0.102684 150 102 SH16606 16606 YFL034C-B_6_63992_63015_INTRON_21_134 intron 24.857003 109.023175 24.857003 85.166172 55.0115875 1.740454178 0.102609 177 8 SH21543 21543 copy of SH4153 27.58368 100.633807 64.1087435 1.806917265 0.102554 10 91 SH10603 10603 RUF8 941-951 + 3' 941 26.932401 97.642862 62.2876315 1.794401817 0.102518 205 41 SH21510 21510 copy of SH2855 33.611116 111.136652 72.373884 1.85958188 0.102518 136 51 SH3049 3049 Ser3 5' flank 28.259933 102.665544 65.4627385 1.815994169 0.102508 150 59 SH2024 2024 Lys3 tRNA 66 80 534.782873 766.489698 650.6362855 2.81333828 0.102498 67 42 SH16330 16330 YDR471W_4_1401759_1402553_INTRON_32_415 intron 25.060633 110.620359 25.060633 86.559726 55.8101795 1.746713419 0.102497 101 103 SH12724 12724 MT COX1 5' 24.779848 108.423466 24.779848 84.643618 54.711733 1.738080471 0.102493 109 81 SH598 598 Gln1 tRNA 31 47 27.370297 99.658903 63.5146 1.802873567 0.102451 207 69 SH18747 18747 YNL162W_14_331319_332151_INTRON_5_516 intron 98.008056 294.59729 98.008056 197.589234 147.798645 2.169670453 0.102447 185 73 SH9247 9247 snR6 / U6 RNA 106-112 + 3' 106 23.623269 76.911585 50.267427 1.701286656 0.102392 138 40 SH16569 16569 YER133W_5_432491_433954_INTRON_178_702 intron 21.938043 87.791426 21.938043 66.853383 44.395713 1.647341035 0.102344 165 75 SH13016 13016 MT COX1 COX1ai2 24.429089 105.684579 24.429089 82.25549 53.3422895 1.727071652 0.102342 34 53 SH17443 17443 YIL133C_9_99416_98527_INTRON_32_321 3' exon 153.939312 425.144948 153.939312 272.205636 213.072474 2.328527349 0.102315 64 74 SH8567 8567 snR19 / U1 RNA U1 331 348 25.304498 88.237041 56.7707695 1.754124781 0.102292 192 58 SH18619 18619 YNL096C_14_444312_443395_INTRON_145_489 5' exon 27.837776 128.666464 27.837776 101.828688 64.833232 1.811797672 0.102281 145 2 SH11064 11064 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2206 2221 27806.80691 24968.66469 26387.7358 4.421402127 0.10228 200 74 SH15153 15153 MT tRNA Thr1 reverse complement 3' 23.796013 100.810512 23.796013 78.014499 50.905256 1.706762626 0.102279 133 93 SH13250 13250 MT COX1 COX1-ai4 26.049834 118.461235 26.049834 93.411401 59.7306175 1.776197005 0.102211 213 62 SH4668 4668 snR3 3' 24.187183 80.63059 52.4088865 1.719404933 0.102211 184 18 SH16116 16116 YDR064W_4_579453_580447_INTRON_22_560 intron 34.018533 144.710176 34.018533 111.691643 72.855088 1.862459887 0.102202 85 33 SH17208 17208 YHR039C-A_8_187670_187164_INTRON_4_165 intron 26.286392 120.004294 26.286392 94.717902 60.502147 1.781770786 0.102171 169 5 SH11204 11204 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2906 2924 162.43346 283.473036 222.953248 2.348213804 0.102157 145 27 SH21313 21313 YPL241C spliced 27.757839 101.471524 64.6146815 1.810331208 0.102127 206 40 SH13626 13626 MT ATP6 ATP6 24.549851 106.647141 24.549851 83.09729 53.8235705 1.730972504 0.102124 162 64 SH7084 7084 snR63 5' 24.405948 82.119722 53.262835 1.726424279 0.102092 68 71 SH5272 5272 snR30 snR30 211 225 29.340493 104.75737 67.0489315 1.826391861 0.102087 124 29 SH16452 16452 YER074W-A_0_5_307649_INTRON_95_196 exon/intron 51.658145 185.989048 51.658145 135.330903 93.494524 1.970786175 0.102079 12 34 SH12904 12904 MT COX1 COX1ai2 25.155923 111.404849 25.155923 87.248926 56.2024245 1.749755051 0.102018 6 73 SH7173 7173 snR64 5' 25.102503 86.88678 55.9946415 1.748146468 0.102011 45 44 SH7478 7478 snR71 snR71 6 23 70.754428 160.735134 115.744781 2.063501418 0.102004 31 28 SH4373 4373 telomerase RNA telomerase 901 913 43.375717 124.281094 83.8284055 1.923391206 0.102003 10 94 SH9876 9876 RUF5-1 RUF5-1 186 203 22.776273 71.756309 47.266291 1.674551524 0.101995 146 45 SH16157 16157 YDR129C_4_715372_713333_INTRON_22_132 intron 26.553433 121.503544 26.553433 95.950111 61.251772 1.787118657 0.101979 62 85 SH18759 18759 YNL162W_14_331319_332151_INTRON_5_516 intron 23.835998 101.142178 23.835998 78.30618 51.071089 1.708175119 0.101951 21 61 SH20603 20603 YHR077C spliced 28.134822 102.455549 65.2951855 1.81488116 0.101921 188 37 SH12722 12722 MT COX1 5' 24.211762 104.033063 24.211762 80.821301 52.5165315 1.720296035 0.101913 107 11 SH17207 17207 YHR039C-A_8_187670_187164_INTRON_4_165 intron 28.306739 130.096216 28.306739 102.789477 65.548108 1.816560161 0.101892 137 79 SH7100 7100 snR63 snR63 6 26 56.853802 142.23616 99.544981 1.998019368 0.101889 165 51 SH18581 18581 YNL044W_14_545264_545873_INTRON_25_103 3' exon 24.308885 104.790171 24.308885 81.481286 52.8950855 1.723415323 0.101864 51 95 SH20915 20915 YLR344W spliced 52.6162 136.627235 94.6217175 1.975990827 0.101831 55 46 SH709 709 Gln3 3' flank 24.936621 85.782888 55.3597545 1.743194156 0.101806 83 32 SH8999 8999 snR17a / U3a U3a 281 300 24.034981 79.64846 51.8417205 1.714679406 0.101746 211 96 SH12672 12672 MT tRNA Trp 5' 24.399114 105.506913 24.399114 82.107799 53.2534565 1.726347802 0.101691 145 36 SH9736 9736 RUF4 RUF4 456 471 27.480141 100.224539 63.85234 1.805176818 0.10169 20 63 SH7068 7068 snR62 3' 32.395573 109.575593 70.985583 1.851170154 0.101679 85 44 SH6698 6698 snR49 snR49 16 32 23.577543 76.682809 50.130176 1.700099229 0.101674 193 5 SH2267 2267 Phe2 5' flank 26.598348 96.178813 61.3885805 1.788087591 0.101667 81 58 SH5537 5537 snR33 5' 24.25784 81.158762 52.708301 1.721879017 0.101599 114 26 SH17489 17489 YJL024C_10_396288_395627_INTRON_23_99 3' exon 28.421253 130.450137 28.421253 103.028884 65.7250685 1.817731047 0.101553 57 100 SH6785 6785 snR50 3' 24.020134 79.566356 51.793245 1.714273122 0.101539 17 47 SH10386 10386 RUF7 3' 33.797253 111.43234 72.6147965 1.861025125 0.101535 161 28 SH17566 17566 YJL189W_10_75932_76473_INTRON_7_392 intron 35.332792 147.822007 35.332792 113.489215 74.4110035 1.871637161 0.1015 180 93 SH2305 2305 Phe2 3' flank 24.514887 82.912932 53.7139095 1.730086763 0.101497 120 92 SH390 390 Asn1 31-47 31 47 41.175486 121.331929 81.2537075 1.909843186 0.101437 79 61 SH9027 9027 snR17a / U3a U3a 421 437 27.790562 101.683783 64.7371725 1.811153727 0.101362 5 91 SH3858 3858 RNaseP RNaseP 256 271 36.366874 114.857656 75.612265 1.878592248 0.101301 188 82 SH9354 9354 RUF1 RUF1 346 370 24.333078 81.69355 53.013314 1.724384954 0.101296 214 102 SH11947 11947 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6621 6636 503.922355 728.304044 616.1131995 2.789660513 0.101282 204 15 SH15440 15440 YBL072C_2_89435_88518_INTRON_1_308 3' exon 27.447149 126.551861 27.447149 100.104712 63.7759305 1.804656804 0.10128 43 5 SH12178 12178 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7776 7798 25.224272 87.782118 56.503195 1.752073006 0.101264 202 76 SH1983 1983 Lys2 3' flank 30.691429 107.282723 68.987076 1.838767738 0.101263 28 29 SH2412 2412 Phe4 3' flank 23.628989 77.035775 50.332382 1.701847484 0.101251 149 34 SH5711 5711 snR34 snR34 476 493 25.593342 90.319689 57.9565155 1.763102267 0.101239 200 100 SH10696 10696 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 366 384 25.212047 87.704874 56.4584605 1.751729032 0.101195 157 19 SH341 341 Arg5 tRNA 41 57 93.515265 191.587219 142.551242 2.153971006 0.101186 65 61 SH21145 21145 YNL246W spliced 37.405816 116.206582 76.806199 1.885396273 0.101164 152 8 SH2013 2013 Lys3 tRNA 11 25 46.286275 128.217561 87.251918 1.940774983 0.101155 25 62 SH7626 7626 snR189 3' 24.315929 81.591915 52.953922 1.723898131 0.101126 57 94 SH8006 8006 snoRNA cluster 2 intergenic 24.784198 108.584783 24.784198 84.800585 54.7923915 1.738720256 0.101061 28 95 SH20865 20865 YLR093C spliced 24.712067 84.304082 54.5080745 1.736460841 0.10105 163 10 SH15410 15410 YBL059C-A_2_110500_110086_INTRON_35_119 intron 24.738272 108.226662 24.738272 84.48839 54.613331 1.737298666 0.101008 78 22 SH4967 4967 snR9 3' 27.891967 102.035027 64.963497 1.812669395 0.100988 132 57 SH13458 13458 MT COX1 intronic 25.406525 113.462162 25.406525 89.055637 57.231081 1.757631949 0.10098 192 29 SH18464 18464 YMR143W_13_551927_552902_INTRON_25_568 intron 27.611999 127.501211 27.611999 100.889212 64.2506055 1.807877225 0.100976 117 83 SH2381 2381 Phe4 5' flank 26.084891 93.780551 59.932721 1.777663996 0.100936 93 85 SH14779 14779 MT ORF11; tRNA Leu; tRNA Gln tRNA Gln 30.147167 135.491686 30.147167 106.344519 68.245843 1.834076203 0.100921 47 32 SH8734 8734 LSR1 / U2 RNA U2 311 333 22.960678 72.951186 47.955932 1.680842336 0.100901 193 68 SH9931 9931 RUF5-1 RUF5-1 461 477 24.39291 82.134616 53.263763 1.726431845 0.100888 48 34 SH11230 11230 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3036 3061 29.037451 104.247472 66.6424615 1.82375103 0.100882 170 17 SH14750 14750 MT ORF11; tRNA Leu; tRNA Gln ORF11 31.753591 139.514747 31.753591 108.761156 70.2573735 1.84669191 0.100754 28 57 SH18820 18820 YNL302C_14_62942_61957_INTRON_21_571 intron 26.630055 122.028424 26.630055 96.398369 61.514212 1.788975465 0.10068 169 4 SH3680 3680 Val2 3' flank 24.842935 85.246354 55.0446445 1.740715071 0.100617 143 11 SH10315 10315 RUF7 RUF7 186 204 24.581362 83.446001 54.0136815 1.732503779 0.100597 143 2 SH4552 4552 U3b (snR17b) U3b 316 333 25.558098 90.140151 57.8491245 1.762296791 0.100546 214 68 SH5190 5190 snR13 106-124 + 3' 106 23.22758 74.607707 48.9176435 1.689465528 0.100539 53 64 SH21223 21223 YOR182C spliced 28.168891 102.598296 65.3835935 1.815468786 0.10051 147 80 SH361 361 Arg5 3' flank 27.407832 99.989444 63.698638 1.804130146 0.100439 169 70 SH21921 21921 copy of SH20201 32.156381 109.321944 70.7391625 1.849659914 0.100417 143 25 SH16980 16980 YGR034W_7_555923_556666_INTRON_20_496 intron 23.369567 97.861866 23.369567 75.492299 49.430933 1.693998808 0.1004 102 77 SH14246 14246 MT tRNA Ser tRNA 27.869563 128.89343 27.869563 102.023867 64.946715 1.812557189 0.100389 101 65 SH1536 1536 Leu3 3' flank 26.608073 96.324104 61.4660885 1.788635577 0.100332 126 2 SH6364 6364 snR43 snR43 61 77 32.800276 110.187715 71.4939955 1.854269569 0.100301 143 23 SH17445 17445 YIL148W_9_68708_69528_INTRON_9_442 5' exon 33.800485 144.303814 33.800485 111.503329 72.651907 1.861247018 0.100296 89 5 SH36 36 Ala1 3' flank 23.91325 78.956172 51.434711 1.711256304 0.100293 10 57 SH657 657 Gln2 71-72 + 3' flank 71 3' flank 22.815883 72.120202 47.4680425 1.676401323 0.100273 79 35 SH16637 16637 YFR024C-A_6_203420_201947_INTRON_48_165 intron 25.814717 116.767053 25.814717 91.952336 58.8835265 1.769993812 0.100233 20 7 SH3015 3015 Ser2 tRNA 36 53 25.715678 91.262479 58.4890785 1.767074779 0.100229 65 41 SH5950 5950 snR36 snR36 206 226 22.922342 72.769596 47.845969 1.679845355 0.100206 154 55 SH21744 21744 copy of SH12759 41.486905 121.828664 81.6577845 1.911997593 0.100189 172 83 SH14800 14800 "MT tRNAs (Lys, Arg1, Gly)" intergenic 24.244498 104.432982 24.244498 81.188484 52.716491 1.721946494 0.100187 180 47 SH2260 2260 Phe1 3' flank 42.023755 122.564899 82.294327 1.915369898 0.100183 12 72 SH18564 18564 YMR292W_13_854795_855293_INTRON_23_104 3' exon 23.087981 95.868626 23.087981 73.780645 48.434313 1.685153144 0.100168 180 85 SH9087 9087 snR14 / U4 RNA U4 51 68 24.012737 79.63231 51.8225235 1.714518557 0.100153 111 88 SH4520 4520 U3b (snR17b) U3b 156 172 104.830315 207.141979 155.986147 2.193086031 0.100146 36 66 SH13625 13625 MT ATP6 ATP6 23.441895 98.400916 23.441895 75.959021 49.700458 1.696360391 0.100145 101 66 SH18700 18700 YNL130C_14_381156_379555_INTRON_30_470 intron 26.53929 121.563187 26.53929 96.023897 61.2815935 1.78733005 0.100141 155 64 SH16762 16762 YGL087C_7_346902_346404_INTRON_12_96 intron 28.914163 131.967185 28.914163 104.053022 66.4835925 1.822714479 0.100138 22 45 SH20189 20189 YDL219W spliced 25.568498 90.249987 57.9092425 1.762747884 0.100136 181 87 SH11113 11113 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2451 2466 449.858955 660.284656 555.0718055 2.744349168 0.100122 182 77 SH20262 20262 YDR397C spliced 27.75714 101.63365 64.695395 1.810873369 0.100052 145 89 SH16149 16149 YDR092W_4_629869_630598_INTRON_31_298 intron 30.447216 136.402778 30.447216 106.955562 68.701389 1.836965518 0.100046 208 61 SH338 338 Arg5 tRNA 26 43 26.386111 95.334476 60.8602935 1.784334042 0.1 45 58 SH8485 8485 snR19 / U1 RNA 5' 27.296875 99.513099 63.404987 1.802123418 0.09999 65 101 SH6996 6996 snR60 snR60 61 80 28.07965 102.453725 65.2666875 1.814691571 0.099989 176 29 SH16063 16063 YDL219W_4_65243_65766_INTRON_66_136 3' exon 25.027868 110.591396 25.027868 86.563528 55.795698 1.746600715 0.099954 58 3 SH353 353 Arg5 3' flank 466.038062 680.97993 573.508996 2.758540235 0.099907 117 54 SH550 550 Cys1 tRNA 51 66 206.592362 342.216483 274.4044225 2.438391106 0.099879 59 32 SH5939 5939 snR36 snR36 151 170 25.19281 87.693107 56.4429585 1.75160977 0.099868 175 66 SH17087 17087 YHL001W_8_104270_105084_INTRON_130_527 intron 28.103905 129.612353 28.103905 102.508448 65.3061765 1.814954258 0.099848 89 66 SH8855 8855 LSR1 / U2 RNA U2 916 931 1046.871263 1389.51668 1218.193972 3.085716446 0.099802 129 95 SH4738 4738 snR4 3' 34.788272 112.860788 73.82453 1.868200691 0.099767 190 96 SH10431 10431 RUF8 RUF8 81 97 27.880012 102.079961 64.9799865 1.812779617 0.099729 8 40 SH4231 4231 telomerase RNA telomerase 191 207 27.92137 102.161148 65.041259 1.813188939 0.099716 206 38 SH9920 9920 RUF5-1 RUF5-1 406 425 26.705923 96.821823 61.763873 1.790734521 0.099677 124 4 SH18410 18410 YMR125W_13_517538_520445_INTRON_26_347 intron 26.846514 123.315174 26.846514 97.46866 62.157587 1.793494147 0.099648 105 35 SH527 527 Cys1 5' flank 55.040398 139.973079 97.5067385 1.98903463 0.099646 6 12 SH9186 9186 snR7 U5 RNA U5 201 213 11893.23105 11848.94566 11871.08836 4.074490537 0.099644 79 55 SH7876 7876 snoRNA cluster1 snR73 23.929869 102.051449 23.929869 79.12158 51.5257245 1.712024107 0.099633 166 89 SH12759 12759 MT COX1 COX1ai1 40.165304 159.254224 40.165304 120.08892 80.127112 1.90377949 0.099599 125 10 SH8737 8737 LSR1 / U2 RNA U2 326 345 23.039244 73.525686 48.282465 1.683789434 0.099597 52 76 SH9024 9024 snR17a / U3a U3a 406 420 42.137782 122.759567 82.4486745 1.916183678 0.099559 190 62 SH13987 13987 MT COB intronic 31.167794 138.19481 31.167794 108.027016 69.597405 1.842593047 0.099548 88 103 SH4364 4364 telomerase RNA telomerase 856 871 171.833872 296.363865 234.0988685 2.369399315 0.09952 29 39 SH8487 8487 snR19 / U1 RNA 5' 24.923409 85.896427 55.409918 1.743587507 0.099504 176 42 SH1182 1182 His1 3' flank 25.134237 87.328691 56.231464 1.749979391 0.099479 165 44 SH17459 17459 YIL148W_9_68708_69528_INTRON_9_442 intron 124.152174 356.405622 124.152174 233.253448 178.702811 2.252131384 0.099473 204 42 SH12836 12836 MT COX1 COX1ai1 24.602959 107.305933 24.602959 83.702974 54.1529665 1.733622252 0.099352 32 104 SH18615 18615 YNL069C_14_494998_493953_INTRON_29_477 intron 24.347821 105.311967 24.347821 81.964146 53.1559835 1.725552158 0.099304 171 2 SH6795 6795 snR50 3' 25.211265 87.874489 56.542877 1.752377902 0.099253 163 63 SH513 513 Asp2 3' flank 25.435463 89.416193 57.425828 1.759107266 0.099216 149 59 SH6154 6154 snR39B 3' 25.040257 86.713865 55.877061 1.747233555 0.099209 25 47 SH7926 7926 snoRNA cluster1 snR72 31.570421 139.165349 31.570421 108.594928 70.0826745 1.845610667 0.099191 86 64 SH775 775 Gln4 3' flank 23.897588 78.943143 51.4203655 1.711135159 0.099186 50 21 SH1384 1384 Leu1 5' flank - tRNA9 9 33.379421 111.013966 72.1966935 1.858517308 0.09915 9 36 SH7580 7580 snR189 5' 23.414108 75.867378 49.640743 1.695838273 0.099094 19 83 SH5732 5732 snR34 3' 26.329651 95.145509 60.73758 1.783457484 0.099079 52 73 SH9048 9048 snR17a / U3a 3' 26.305617 95.03782 60.6717185 1.782986296 0.099051 55 58 SH5213 5213 snR30 5' 32.396176 109.717439 71.0568075 1.851605691 0.099018 155 79 SH8783 8783 LSR1 / U2 RNA U2 556 573 25.209339 87.887558 56.5484485 1.752420694 0.098962 105 91 SH395 395 Asn1 56-70 56 70 59.037917 145.349501 102.193709 2.009424162 0.098906 71 51 SH1733 1733 Leu7 5' flank 29.410529 105.068505 67.239517 1.827624585 0.098888 48 81 SH807 807 Glu1 tRNA 51 63 31.354155 108.317507 69.835831 1.844078305 0.098865 78 76 SH68 68 Ala2 5' flank 25.91239 92.767764 59.340077 1.773348106 0.098843 205 64 SH4015 4015 SRP RNA 5' 26.080036 93.949544 60.01479 1.778258291 0.098825 152 46 SH12455 12455 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.924023 109.885913 24.924023 85.96189 55.4429565 1.743846381 0.098809 67 86 SH11993 11993 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6851 6866 56.250249 141.662451 98.95635 1.995443668 0.098802 2 28 SH12096 12096 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7366 7388 23.701137 77.677869 50.689503 1.704918033 0.098799 33 39 SH840 840 Glu2 5' flank 26.691658 96.823371 61.7575145 1.790689809 0.098796 39 76 SH2362 2362 Phe3 3' flank 31.472457 108.483127 69.977792 1.844960235 0.098782 12 82 SH7533 7533 snR79 snR79 6 24 117.88229 224.962952 171.422621 2.234068131 0.09878 23 95 SH11024 11024 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2006 2019 418.386512 620.539227 519.4628695 2.71555451 0.098762 183 42 SH18292 18292 YML073C_13_124172_123227_INTRON_16_430 exon/intron 28.018152 129.422487 28.018152 102.404335 65.2112435 1.814322482 0.098702 76 49 SH9510 9510 RUF3 5' 23.633417 77.262983 50.4482 1.702845675 0.098687 145 93 SH8189 8189 snoRNA cluster 3; snR70/intergenic 23.956879 102.339574 23.956879 79.382695 51.669787 1.713236671 0.09866 21 2 SH18137 18137 YLR406C_12_931752_931062_INTRON_58_406 intron 31.943979 140.081847 31.943979 109.137868 70.5409235 1.848441141 0.098487 63 22 SH11573 11573 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4751 4764 40.245656 120.265333 80.2554945 1.904474775 0.098476 20 86 SH19484 19484 ADH1 24.346925 82.031622 53.1892735 1.725824058 0.098446 22 47 SH15467 15467 YBL087C_2_60732_59815_INTRON_43_546 intron 25.400073 113.644665 25.400073 89.244592 57.3223325 1.758323854 0.098428 6 24 SH7933 7933 snoRNA cluster1 snR72/3' 28.348671 130.410053 28.348671 103.061382 65.7050265 1.817598595 0.098398 38 15 SH157 157 Arg2 5' flank 26.227855 94.733144 60.4804995 1.781615369 0.098374 129 31 SH8593 8593 snR19 / U1 RNA U1 461 473 33.024285 110.588767 71.806526 1.856163916 0.098348 17 100 SH1937 1937 Lys1 3' flank 25.756351 91.722553 58.739452 1.768929891 0.098347 162 51 SH6540 6540 snR46 191-197 + 3' 191 26.298679 95.059642 60.6791605 1.783039564 0.098333 101 8 SH18538 18538 YMR230W_13_732413_733140_INTRON_53_462 intron 26.893991 123.683747 26.893991 97.789756 62.3418735 1.79477985 0.098303 122 5 SH19047 19047 YOR234C_15_779404_778554_INTRON_20_546 intron 26.830123 123.328101 26.830123 97.497978 62.1640505 1.793539305 0.098281 184 72 SH20524 20524 YGR118W spliced 63.628601 151.521568 107.5750845 2.031711696 0.098252 93 16 SH17160 17160 YHR016C_8_138446_136872_INTRON_48_215 exon/intron 35.912613 149.34967 35.912613 114.437057 75.174835 1.876072484 0.098212 123 25 SH18202 18202 YML024W_13_225889_226697_INTRON_4_401 intron 39.611301 158.036301 39.611301 119.425 79.5181505 1.90046627 0.098146 67 64 SH15861 15861 YDL079C_4_314747_312950_INTRON_413_704 intron 25.852671 117.269052 25.852671 92.416381 59.134526 1.77184112 0.098133 24 45 SH5245 5245 snR30 snR30 76 92 25.434266 89.51798 57.476123 1.759487466 0.098017 85 4 SH193 193 Arg2 3' flank 23.636351 77.334852 50.4856015 1.703167535 0.098001 54 69 SH5444 5444 snR31 3' 27.207671 99.258065 63.232868 1.80094288 0.097988 131 69 SH8081 8081 snoRNA cluster 2 3' 25.890924 117.593244 25.890924 92.70232 59.296622 1.773029953 0.097947 41 70 SH4989 4989 snR10 5' 23.061456 73.784133 48.4227945 1.685049849 0.097944 52 101 SH13637 13637 MT ATP6 ATP6 90.983429 278.513117 90.983429 188.529688 139.7565585 2.145372198 0.097906 166 39 SH21180 21180 YNR053C spliced 28.610878 103.595606 66.103242 1.82022276 0.097878 104 6 SH11674 11674 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5256 5273 228.513174 371.430309 299.9717415 2.477080344 0.097874 49 46 SH18154 18154 YLR426W_12_987057_988108_INTRON_81_151 5' exon 26.784841 123.111649 26.784841 97.326808 62.0558245 1.79278255 0.0978 66 41 SH6970 6970 snR60 5' 24.910189 85.961193 55.435691 1.743789465 0.097756 142 92 SH15726 15726 YBR255C-A_2_727032_726576_INTRON_64_157 3' exon 31.078462 138.078534 31.078462 108.000072 69.539267 1.842230109 0.097719 91 98 SH19836 19836 Negative Control 36.906557 115.760155 76.333356 1.882714357 0.097713 87 37 SH14987 14987 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 24.181436 104.154273 24.181436 80.972837 52.5771365 1.72079693 0.097704 132 20 SH498 498 Asp2 tRNA 51 65 25.914279 92.889632 59.4019555 1.773800742 0.097702 52 54 SH3034 3034 Ser2 3' flank 32.124534 109.424473 70.7745035 1.849876831 0.097668 61 38 SH13351 13351 MT COX1 intronic 24.772751 108.800152 24.772751 85.027401 54.900076 1.739572946 0.097616 195 35 SH1976 1976 Lys2 3' flank 30.902892 107.766153 69.3345225 1.840949529 0.097574 141 22 SH9743 9743 RUF4 RUF4 491 507 25.162316 87.691623 56.4269695 1.751486726 0.09757 87 7 SH3240 3240 Thr1 tRNA 56 72 84.274394 179.444939 131.8596665 2.120111973 0.09755 139 93 SH3686 3686 Val3 5' flank 70.51139 160.806849 115.6591195 2.063179882 0.097526 96 40 SH20260 20260 YDR397C spliced 35.854875 114.400419 75.127647 1.875799787 0.097511 151 92 SH9245 9245 snR6 / U6 RNA 96-112 + 3' 96 23.282134 75.173423 49.2277785 1.692210238 0.097495 150 72 SH12047 12047 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7121 7134 26.940056 98.066039 62.5030475 1.795901193 0.097464 92 75 SH18083 18083 YLR344W_12_819312_820142_INTRON_20_466 intron 27.775728 128.703514 27.775728 101.927786 64.851757 1.811921747 0.097447 192 102 SH5605 5605 snR34 5' 25.16662 87.735301 56.4509605 1.751671336 0.097412 21 10 SH19452 19452 CYC1 25.67487 91.243527 58.4591985 1.766852857 0.097397 28 79 SH5333 5333 snR30 snR30 516 532 27.606913 101.151083 64.378998 1.808744213 0.097376 21 93 SH5917 5917 snR36 snR36 41 60 24.202406 81.14521 52.673808 1.721594716 0.097344 188 31 SH4730 4730 snR4 186 + 3' 186 24.358957 82.21019 53.2845735 1.726601494 0.097321 166 19 SH19586 19586 AEP2/ATP13 2.1 29.573791 105.46746 67.5206255 1.829436457 0.097292 167 54 SH11023 11023 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2001 2014 354.919817 538.641304 446.7805605 2.650094269 0.097286 72 70 SH16202 16202 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 27.57791 127.603495 27.57791 101.025585 64.3017475 1.808222776 0.097265 105 47 SH11256 11256 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3166 3179 30.339477 106.912291 68.625884 1.836487952 0.097258 46 13 SH10794 10794 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 856 874 23.311095 75.370688 49.3408915 1.693206992 0.097252 85 67 SH9285 9285 RUF1 RUF1 1 17 29.098344 104.564981 66.8316625 1.824982265 0.097251 123 11 SH10742 10742 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 596 614 30.659551 107.446992 69.0532715 1.839184259 0.09725 11 79 SH2142 2142 Met1 3' flank 26.962585 98.194003 62.578294 1.796423719 0.097148 91 94 SH12451 12451 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 53.993952 191.781415 53.993952 138.787463 96.3907075 1.984035168 0.097134 137 100 SH18344 18344 YML124C_13_23684_22049_INTRON_26_323 intron 24.265541 104.858216 24.265541 81.592675 52.929108 1.723694575 0.097114 59 40 SH17130 17130 YHR010W_8_126513_127484_INTRON_32_592 intron 378.782087 947.687071 378.782087 569.904984 474.3435355 2.676092986 0.09711 138 29 SH16143 16143 YDR092W_4_629869_630598_INTRON_31_298 intron 27.041432 124.60313 27.041432 98.561698 62.801565 1.797970466 0.097089 104 36 SH7154 7154 snR63 3' 25.523767 90.224004 57.8738855 1.762482641 0.097071 89 86 SH16026 16026 YDL189W_4_122079_123590_INTRON_1_99 3' exon 55.934537 196.305752 55.934537 141.371215 98.652876 1.994109751 0.097035 161 6 SH6938 6938 snR58 snR58 51 67 26.912344 97.971551 62.4419475 1.79547644 0.097035 190 68 SH8612 8612 snR19 / U1 RNA U1 556 572 25.937969 93.123091 59.53053 1.774739749 0.097001 33 33 SH8569 8569 snR19 / U1 RNA U1 341 357 27.094838 98.815855 62.9553465 1.799032619 0.096985 174 100 SH2908 2908 Pro8 tRNA 61 77 211.667154 349.49433 280.580742 2.448057859 0.096978 27 9 SH1559 1559 Leu4 5' flank 24.908516 86.01895 55.463733 1.744009097 0.096973 75 4 SH15310 15310 YAL003W_1_142172_143158_INTRON_81_446 5'exon 26.439367 121.245656 26.439367 95.806289 61.122828 1.78620344 0.096956 115 58 SH7019 7019 snR60 3' 29.77696 105.873479 67.8252195 1.831391208 0.09691 211 34 SH14380 14380 MT ORF9 and ORF10 (hypothetical) ORF10 / 3' 25.869658 117.525729 25.869658 92.656071 59.2628645 1.772782639 0.096863 198 41 SH16475 16475 YER102W_5_362729_363698_INTRON_1_360 intron 26.595048 122.122248 26.595048 96.5272 61.561124 1.789306541 0.096859 101 41 SH18576 18576 YNL044W_14_545264_545873_INTRON_25_103 exon/intron 25.943294 118.117522 25.943294 93.174228 59.558761 1.774945655 0.096858 193 3 SH810 810 Glu1 66-72 + 3' flank 66 85 25.503493 90.105364 57.8044285 1.761961112 0.096836 198 9 SH15189 15189 MT COX3 cox3 24.158743 104.054141 24.158743 80.895398 52.5270705 1.72038318 0.096807 211 20 SH19178 19178 YPL079W_16_406631_407534_INTRON_12_432 intron 25.110896 111.522147 25.110896 87.411251 56.2610735 1.750208015 0.096783 171 5 SH8482 8482 snR19 / U1 RNA 5' 26.053164 93.956688 60.004926 1.778186904 0.096782 92 99 SH17010 17010 YGR148C_7_788173_787307_INTRON_1_392 intron 40.613359 160.477974 40.613359 120.864615 80.738987 1.907083296 0.096764 75 49 SH15776 15776 YDL012C_4_431513_431104_INTRON_46_131 intron 23.634263 100.053912 23.634263 77.419649 50.526956 1.703523135 0.096747 47 98 SH5118 5118 snR11 snR11 191 207 27.398607 100.237231 63.817919 1.804942638 0.096742 174 54 SH7477 7477 snR71 snR71 1 20 87.094563 183.343333 135.218948 2.131037553 0.096682 199 14 SH15678 15678 YBR191W_2_606228_607098_INTRON_12_399 intron 26.122413 119.505162 26.122413 94.382749 60.252581 1.779975655 0.096608 168 35 SH7986 7986 snoRNA cluster 2 snR57 24.784462 108.983901 24.784462 85.199439 54.9919505 1.740299124 0.096596 87 34 SH7595 7595 snR189 snR189 46 62 26.491239 96.072462 61.2818505 1.787331871 0.096578 204 101 SH19174 19174 YPL079W_16_406631_407534_INTRON_12_432 intron 23.723824 100.726026 23.723824 78.002202 50.863013 1.706402083 0.096567 18 91 SH2668 2668 Pro4 tRNA 6 22 372.079789 561.366901 466.723345 2.669059524 0.096541 3 26 SH16400 16400 YER056C-A_5_270183_269421_INTRON_38_434 intron 26.071455 119.181432 26.071455 94.109977 60.090716 1.778807379 0.096533 24 23 SH5725 5725 snR34 546-550 + 3' 546 25.907204 92.953614 59.430409 1.774008719 0.096509 9 32 SH14346 14346 MT VAR1 includes 5’ processing site 3' 45.092316 171.008048 45.092316 126.915732 86.004024 1.934518772 0.096503 120 77 SH6133 6133 snR39B snR39B 6 20 167.595374 291.25448 229.424927 2.360640602 0.096485 7 85 SH17143 17143 YHR010W_8_126513_127484_INTRON_32_592 intron 32.440467 141.353783 32.440467 109.913316 71.1768915 1.852339017 0.096445 140 55 SH20045 20045 YBR189W spliced 26.662283 96.868047 61.765165 1.790743606 0.096434 176 36 SH2176 2176 Met2 tRNA 11 23 76.571884 169.11022 122.841052 2.089343527 0.096416 89 17 SH3959 3959 RNase MRP RNaseMRP 211 227 23.72768 78.04045 50.884065 1.706581799 0.096412 194 81 SH8104 8104 snoRNA cluster 3; 5' 35.900884 149.423931 35.900884 114.523047 75.2119655 1.876286938 0.096402 40 12 SH8100 8100 snoRNA cluster 3; 5' 55.048091 194.272416 55.048091 140.224325 97.636208 1.989610904 0.09636 116 30 SH9879 9879 RUF5-1 RUF5-1 201 213 45.425902 127.365533 86.3957175 1.936492216 0.096335 121 90 SH629 629 Gln2 5' flank 25.907808 92.97498 59.441394 1.774088986 0.09633 129 27 SH11750 11750 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5636 5649 88.355285 185.118866 136.7370755 2.135886287 0.096282 105 69 SH17466 17466 YIL148W_9_68708_69528_INTRON_9_442 intron 24.409927 106.05858 24.409927 82.648653 53.52929 1.728591483 0.09627 205 97 SH14552 14552 MT 21S rRNA 21S rRNA3 25.787145 116.922353 25.787145 92.135208 58.9611765 1.770566141 0.096254 159 30 SH14223 14223 MT ATP9 ATP9 24.929518 110.155185 24.929518 86.225667 55.5775925 1.74489973 0.096243 149 99 SH21890 21890 copy of SH18800 24.768631 85.123325 54.945978 1.739935908 0.096218 116 9 SH6040 6040 snR37 snR37 116 133 25.041179 86.990716 56.0159475 1.748311686 0.096172 184 100 SH12770 12770 MT COX1 COX1ai1 26.568484 122.02689 26.568484 96.458406 61.513445 1.78897005 0.096158 49 12 SH14879 14879 MT tRNA Ala 5' / tRNA 26.661533 122.549398 26.661533 96.887865 61.774699 1.790810638 0.096128 112 50 SH12326 12326 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.871495 109.716209 24.871495 85.844714 55.3581045 1.743181211 0.096107 59 54 SH15119 15119 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 3' 24.708903 108.429532 24.708903 84.720629 54.714766 1.738104546 0.096092 57 87 SH11276 11276 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3266 3283 25.737007 91.804005 58.770506 1.76915943 0.096046 106 28 SH19229 19229 YPL090C_16_378390_377286_INTRON_7_400 intron 34.824244 146.939403 34.824244 113.115159 73.9697015 1.869053866 0.096037 43 44 SH18707 18707 YNL130C_14_381156_379555_INTRON_30_470 intron 24.702878 108.387745 24.702878 84.684867 54.6938725 1.737938674 0.096025 162 31 SH10670 10670 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 236 253 41.324841 121.863954 81.5943975 1.91166034 0.096018 144 54 SH17324 17324 YIL004C_9_348502_347943_INTRON_12_142 intron 34.931262 147.191407 34.931262 113.260145 74.0957035 1.869793026 0.096003 17 14 SH15148 15148 MT tRNA Thr1 reverse complement tRNA 25.677319 116.069819 25.677319 91.3925 58.5349095 1.767414951 0.095989 6 74 SH12153 12153 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7651 7666 943.943467 1270.176938 1107.060203 3.044171239 0.095987 39 12 SH6039 6039 snR37 snR37 111 127 24.311027 81.998495 53.154761 1.72554217 0.095985 16 56 SH12922 12922 MT COX1 COX1ai2 24.491637 106.730991 24.491637 83.239354 53.8654955 1.731310659 0.095911 152 38 SH17061 17061 YGR214W_7_920570_921783_INTRON_91_545 intron 27.386975 126.636245 27.386975 100.24927 63.8181225 1.804944023 0.095905 105 62 SH15285 15285 MT 9S rRNA 9S 813.450881 1925.607418 813.450881 1113.156537 963.303709 2.983763232 0.095872 169 60 SH7667 7667 snoRNA cluster1 snR78 26.352545 120.844195 26.352545 95.49165 60.9220975 1.784774847 0.09585 133 16 SH17494 17494 YJL041W_10_365480_368069_INTRON_2_119 intron 38.352391 155.186472 38.352391 117.834081 78.093236 1.892613419 0.0958 74 62 SH905 905 Glu3 tRNA 36 48 1241.451455 1622.978207 1432.214831 3.156008167 0.095766 135 21 SH18867 18867 YNR053C_14_723108_721117_INTRON_811_1341 intron 124.243698 357.133526 124.243698 233.889828 179.066763 2.253014983 0.095761 154 82 SH16921 16921 YGL251C_7_31636_27921_INTRON_59_210 intron 29.77736 134.717865 29.77736 105.940505 67.8589325 1.831607023 0.095731 116 27 SH21681 21681 copy of SH10031 26.374826 95.604402 60.989614 1.785255885 0.095708 97 42 SH16260 16260 YDR424C_4_1319830_1319376_INTRON_26_121 intron 25.91241 117.980337 25.91241 93.067927 59.4901685 1.774445199 0.095695 66 35 SH19412 19412 YPR098C_16_729525_728944_INTRON_48_143 intron/exon 217.20369 573.291725 217.20369 357.088035 287.1458625 2.458102563 0.09566 35 11 SH16084 16084 YDR025W_4_491510_492319_INTRON_46_384 intron 24.210891 104.55958 24.210891 81.348689 52.77979 1.722467658 0.095626 33 85 SH3262 3262 Thr2 5' flank 25.657919 91.294417 58.476168 1.766978905 0.095591 76 81 SH5425 5425 snR31 snR31 191 207 25.253286 88.494269 56.8737775 1.754912075 0.095584 114 82 SH7167 7167 snR64 5' 26.566929 96.496057 61.531493 1.789097453 0.095566 26 27 SH8481 8481 snR19 / U1 RNA 5' 24.296591 81.936622 53.1166065 1.725230321 0.095561 134 104 SH10458 10458 RUF8 RUF8 216 232 27.482557 100.720108 64.1013325 1.806867057 0.095545 108 51 SH3896 3896 RNaseP 3' 25.675416 91.427323 58.5513695 1.767537058 0.095476 182 50 SH18662 18662 YNL112W_14_413636_416278_INTRON_1274_2275 intron 25.08658 111.45193 25.08658 87.36535 56.225965 1.749936918 0.095444 101 58 SH6951 6951 snR58 3' 25.334247 89.064754 57.1995005 1.757392236 0.095436 114 68 SH7246 7246 snR65 snR65 6 27 23.291646 75.389826 49.340736 1.693205623 0.09542 33 96 SH6654 6654 snR48 96-113 + 3' 96 26.607614 96.69472 61.651167 1.789941302 0.09541 36 94 SH6142 6142 snR39B snR39B 51 67 26.264253 95.12167 60.6929615 1.783138329 0.095392 60 74 SH669 669 Gln2 3' flank 76.271907 168.801526 122.5367165 2.088266239 0.095386 29 44 SH5641 5641 snR34 snR34 126 141 26.784413 97.510614 62.1475135 1.793423757 0.095369 101 90 SH17875 17875 YLR048W_12_242233_243350_INTRON_91_449 5' exon 25.20529 112.390179 25.20529 88.184889 56.6950895 1.753545445 0.095363 214 23 SH20883 20883 YLR211C spliced 25.186537 88.057908 56.6222225 1.752986912 0.095346 199 51 SH20091 20091 YDL012C spliced 26.473087 96.082122 61.2776045 1.787301779 0.095345 196 76 SH10393 10393 RUF7 3' 35.251303 113.723731 74.487517 1.872083498 0.095337 12 84 SH3108 3108 Ser4 5' flank 30.146169 106.658566 68.4023675 1.835071134 0.095333 199 31 SH20054 20054 YBR220C spliced 24.317583 82.100617 53.2091 1.725985913 0.095316 84 39 SH9560 9560 RUF3 RUF3 186 202 25.848799 92.657819 59.253309 1.772712609 0.095304 147 50 SH19644 19644 SIR1 2.2 55.285001 140.624139 97.95457 1.991024703 0.095303 198 15 SH10818 10818 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 976 991 16211.64789 15602.70286 15907.17537 4.201593069 0.095301 60 47 SH6122 6122 snR39B 5' 26.156411 94.63613 60.3962705 1.781010122 0.095286 204 25 SH8691 8691 LSR1 / U2 RNA U2 96 115 25.38507 89.431473 57.4082715 1.758974471 0.09526 164 58 SH18348 18348 YML124C_13_23684_22049_INTRON_26_323 intron 24.520425 107.015153 24.520425 83.494728 54.0075765 1.732454689 0.095249 210 57 SH17944 17944 YLR128W_12_398531_399434_INTRON_4_97 exon/intron 25.129563 111.806544 25.129563 87.676981 56.403272 1.751304298 0.095244 185 2 SH13124 13124 MT COX1 COX1ai3 26.536764 121.920949 26.536764 96.384185 61.4604745 1.788595909 0.095215 121 37 SH14421 14421 MT 21S rRNA 21S rRNA3 29.934087 135.20228 29.934087 106.268193 68.10114 1.833154382 0.09517 96 29 SH528 528 Cys1 5' flank 26.492779 96.18714 61.3399595 1.787743485 0.095151 83 20 SH16816 16816 YGL178W_7_167356_170575_INTRON_4_643 intron 29.902926 135.1144 29.902926 106.211474 68.0572 1.832874077 0.095133 181 3 SH10895 10895 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1361 1379 497.483237 723.071089 610.277163 2.785527119 0.0951 207 99 SH3455 3455 Trp1 106 + 3' flank 106 23.988019 79.888597 51.938308 1.715487797 0.095094 69 15 SH7587 7587 snR189 snR189 6 25 29.048409 104.589753 66.819081 1.824900498 0.095084 214 36 SH18319 18319 YML085C_13_99400_97941_INTRON_26_141 intron 23.650892 100.306623 23.650892 77.655731 50.6533115 1.704607843 0.095062 183 62 SH20560 20560 YHR001W-A spliced 379.427428 571.506013 475.4667205 2.677120125 0.095052 14 63 SH11170 11170 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2736 2753 26.465247 96.068535 61.266891 1.787225843 0.095048 185 63 SH2531 2531 Pro1 3' flank 36.173822 114.957571 75.5656965 1.87832469 0.095042 15 98 SH1411 1411 Leu1 3' flank 31.074133 108.134939 69.604536 1.842637543 0.095024 94 66 SH13977 13977 MT COB intronic 30.17677 135.911408 30.17677 106.734638 68.455704 1.835409641 0.095006 101 97 SH4200 4200 telomerase RNA telomerase 36 52 24.968728 86.602142 55.785435 1.746520824 0.095 130 30 SH241 241 Arg3 61-72 + 3' flank 61 3' flank 154.244823 273.815864 214.0303435 2.330475348 0.094962 6 90 SH14326 14326 MT VAR1 includes 5’ processing site VAR1 28.945831 132.345985 28.945831 104.400154 66.6729925 1.823949948 0.09496 176 76 SH17054 17054 YGR214W_7_920570_921783_INTRON_91_545 intron 25.806983 117.204717 25.806983 92.397734 59.1023585 1.771604812 0.09495 184 45 SH1066 1066 Gly3 66-71 + 3' flank 66 23.588248 77.272089 50.4301685 1.702690419 0.094947 27 87 SH3832 3832 RNaseP RNaseP 126 142 25.436697 89.818745 57.627721 1.760631445 0.09493 71 33 SH18681 18681 YNL112W_14_413636_416278_INTRON_1274_2275 intron 23.071577 96.145383 23.071577 74.073806 48.5726915 1.686392169 0.094892 171 48 SH12368 12368 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.687204 122.787443 26.687204 97.100239 61.8937215 1.791646596 0.094888 99 75 SH11917 11917 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6471 6487 149.454597 267.515566 208.4850815 2.319074984 0.094885 104 63 SH9892 9892 RUF5-1 RUF5-1 266 284 24.861563 85.886005 55.373784 1.743304202 0.094875 101 18 SH10801 10801 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 891 908 14660.34565 14286.01919 14473.18242 4.160564036 0.09484 207 37 SH16011 16011 YDL137W_4_216158_217074_INTRON_1_332 intron 24.343395 105.66147 24.343395 82.318075 53.330735 1.726977569 0.094835 29 103 SH15222 15222 MT COX3 cox3 24.384948 105.988071 24.384948 82.603123 53.4940355 1.728305362 0.094821 94 90 SH2440 2440 Phe5 5' flank 229.559124 373.508686 301.533905 2.479336152 0.094814 69 6 SH6702 6702 snR49 snR49 36 52 56.493628 142.289795 99.3917115 1.997350169 0.094809 15 57 SH163 163 Arg2 5' flank 30.718277 107.655283 69.18678 1.840023119 0.094808 192 62 SH11421 11421 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3991 4009 65.884246 154.792536 110.338391 2.042726647 0.094797 92 57 SH20446 20446 YGL103W spliced 27.951493 102.48759 65.2195415 1.814377741 0.094785 25 70 SH10380 10380 RUF7 3' 27.029084 98.689639 62.8593615 1.798369965 0.0947 94 85 SH7761 7761 snoRNA cluster1 snR76 107.502808 317.963208 107.502808 211.4604 159.481604 2.202710595 0.094684 187 16 SH13970 13970 MT COB Cytbi3 23.619128 100.105563 23.619128 77.486435 50.5527815 1.703745056 0.094679 195 43 SH8632 8632 snR19 / U1 RNA 656-668 + 3' 656 24.195914 81.327925 52.7619195 1.722320587 0.094676 86 22 SH11173 11173 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2751 2766 590.583744 840.352 715.467872 2.854590137 0.094628 212 59 SH3085 3085 Ser3 3' flank 26.3267 95.464811 60.8957555 1.784587023 0.094628 11 12 SH6921 6921 snR58 5' 25.290902 88.842892 57.066897 1.756384259 0.094596 169 73 SH17955 17955 YLR185W_12_522665_523290_INTRON_8_366 intron 26.189659 120.031775 26.189659 94.842116 60.5158875 1.781869407 0.094561 205 26 SH20575 20575 YHR012W spliced 27.504365 100.899388 64.2018765 1.807547722 0.094556 37 75 SH18630 18630 YNL096C_14_444312_443395_INTRON_145_489 intron 25.394457 113.955666 25.394457 89.561209 57.477833 1.759500386 0.094554 129 81 SH1196 1196 Ile1 5' flank 24.866508 85.950718 55.408613 1.743577279 0.094521 117 61 SH6981 6981 snR60 5' - 5 -14 5 23.62097 77.512101 50.5665355 1.7038632 0.094499 91 90 SH2054 2054 Lys4 5' flank 24.212335 81.45474 52.8335375 1.72290969 0.094496 172 87 SH10344 10344 RUF7 RUF7 331 350 24.040958 80.29516 52.168059 1.717404678 0.094496 137 73 SH12295 12295 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.6986 100.705086 23.6986 78.006486 50.852543 1.706312676 0.094462 6 75 SH9019 9019 snR17a / U3a U3a 381 402 25.376713 89.450698 57.4137055 1.759015577 0.094422 161 56 SH10932 10932 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1546 1563 24.52735 83.618768 54.073059 1.732980939 0.094375 15 66 SH12010 12010 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6936 6953 26.722432 97.304556 62.013494 1.792486201 0.094334 94 9 SH3062 3062 Ser3 tRNA 6 18 2093.835612 2588.779752 2341.307682 3.36945849 0.094328 134 37 SH8706 8706 LSR1 / U2 RNA U2 171 187 28.505991 103.589345 66.047668 1.819857488 0.094314 207 46 SH7121 7121 snR63 snR63 111 130 24.429808 82.95592 53.692864 1.72991657 0.094294 194 15 SH19849 19849 Negative Control 26.109715 94.496247 60.302981 1.780338781 0.094293 99 19 SH19415 19415 YPR132W_16_794960_795762_INTRON_66_430 5' exon 33.760672 144.536588 33.760672 111.775916 72.768294 1.861942193 0.094283 26 50 SH21574 21574 copy of SH5620 27.019282 98.676839 62.8480605 1.79829188 0.094281 11 82 SH17650 17650 YJR145C_10_702761_701720_INTRON_15_270 intron 26.504697 121.813434 26.504697 96.308737 61.406717 1.788215879 0.094265 203 72 SH7013 7013 snR60 3' 340.889349 521.210206 431.0497775 2.634527425 0.094263 178 33 SH3888 3888 RNaseP 3' 23.358304 75.893208 49.625756 1.695707136 0.094237 80 53 SH16635 16635 YFR024C-A_6_203420_201947_INTRON_48_165 exon/intron 25.813872 117.328004 25.813872 92.514132 59.164002 1.772057543 0.094233 45 69 SH1389 1389 Leu1 tRNA 16 28 26.49986 96.291048 61.395454 1.788136215 0.094205 57 71 SH18567 18567 YNL012W_14_609682_611661_INTRON_106_189 exon/intron 60.446075 207.002665 60.446075 147.55659 104.0013325 2.017038904 0.094196 59 35 SH16619 16619 YFL039C_6_54695_53260_INTRON_11_318 intron 23.155249 96.797179 23.155249 74.64193 48.8985895 1.689296332 0.094176 183 2 SH10689 10689 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 331 349 26.397482 95.825525 61.1115035 1.786122969 0.094146 208 101 SH5024 5024 snR10 snR10 151 167 23.986614 79.966274 51.976444 1.715806564 0.094052 42 86 SH12816 12816 MT COX1 COX1ai1 23.943591 102.621866 23.943591 79.678275 51.810933 1.714421413 0.094037 145 95 SH16773 16773 YGL103W_7_310965_311925_INTRON_50_560 intron 49.971188 182.588436 49.971188 133.617248 91.794218 1.962815326 0.094027 156 73 SH19685 19685 Negative Control 28.895242 104.355568 66.625405 1.823639862 0.094013 172 91 SH11099 11099 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2381 2396 39.699757 119.79443 79.7470935 1.901714864 0.094011 209 45 SH3143 3143 Ser4 3' flank 24.476984 83.305289 53.8911365 1.731517342 0.093999 153 33 SH12036 12036 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7066 7089 23.181884 74.821653 49.0017685 1.690211754 0.09397 121 60 SH10074 10074 RUF6 RUF6 216 230 27.011381 98.668009 62.839695 1.798234068 0.093924 73 78 SH3021 3021 Ser2 tRNA 66 80 33.637317 111.640292 72.6388045 1.861168688 0.093803 119 40 SH16041 16041 YDL191W_4_117665_118518_INTRON_4_494 intron 23.811641 101.625352 23.811641 78.813711 51.312676 1.710224664 0.093803 183 25 SH18587 18587 YNL050C_14_534978_534075_INTRON_18_108 intron 23.448931 98.94197 23.448931 76.493039 49.970985 1.69871791 0.093769 36 97 SH20840 20840 YLL050C spliced 26.171136 94.816345 60.4937405 1.781710439 0.093768 200 23 SH19983 19983 YBL091C-A spliced 32.292567 109.85727 71.0749185 1.85171637 0.093766 114 99 SH21882 21882 copy of SH18402 2275.765309 2787.119613 2531.442461 3.40336806 0.093699 60 73 SH11285 11285 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3311 3324 26.555288 96.584195 61.5697415 1.78936733 0.093697 124 56 SH13138 13138 MT COX1 cox1ai3/intronic 25.446505 114.448096 25.446505 90.001591 57.724048 1.761356779 0.093685 68 61 SH18775 18775 YNL265C_14_145280_144279_INTRON_28_132 exon/intron 24.42248 106.383579 24.42248 82.961099 53.6917895 1.729907879 0.093655 196 2 SH13849 13849 MT COB Cytbi2 25.368318 113.831504 25.368318 89.463186 57.415752 1.759031057 0.093654 3 95 SH20302 20302 YER003C spliced 29.75206 106.010653 67.8813565 1.831750512 0.093633 29 78 SH2742 2742 Pro5 tRNA 91 103 72.916427 164.385765 118.651096 2.074271754 0.093549 190 18 SH13870 13870 MT COB intronic 25.791407 117.214987 25.791407 92.42358 59.1074935 1.771642543 0.093524 3 83 SH13871 13871 MT COB intronic 31.391592 139.042044 31.391592 108.650452 70.021022 1.845228445 0.093492 76 102 SH13666 13666 MT ATP6 ATP6 25.586952 115.596031 25.586952 91.009079 58.2980155 1.765653771 0.093351 59 73 SH3070 3070 Ser3 tRNA 46 62 24.784657 85.49175 55.1382035 1.741452612 0.093337 111 11 SH21705 21705 copy of SH11080 14501.02713 14163.35206 14332.18959 4.156312545 0.093327 71 52 SH18389 18389 YMR116C_13_500687_499455_INTRON_538_810 intron 24.43491 106.517826 24.43491 83.082916 53.758913 1.730450479 0.093235 205 74 SH8744 8744 LSR1 / U2 RNA U2 361 378 24.074941 80.632869 52.353905 1.718949081 0.093209 87 64 SH5936 5936 snR36 snR36 136 148 39.981894 120.228556 80.105225 1.903660845 0.09318 16 5 SH15456 15456 YBL087C_2_60732_59815_INTRON_43_546 intron 24.331363 105.716462 24.331363 82.385099 53.358231 1.727201423 0.093103 6 89 SH9204 9204 snR7 U5 RNA 3' 26.271068 95.326176 60.798622 1.783893736 0.093073 185 61 SH15210 15210 MT COX3 cox3 28.299306 130.557668 28.299306 103.258362 65.778834 1.818086171 0.093055 95 12 SH15669 15669 YBR191W_2_606228_607098_INTRON_12_399 5' exon 40.469072 160.365165 40.469072 120.896093 80.6825825 1.906779791 0.09305 99 36 SH17735 17735 YKL156W_11_158616_159214_INTRON_4_353 intron 25.766172 117.058487 25.766172 92.292315 59.0292435 1.771067217 0.093039 153 56 SH18060 18060 YLR333C_12_796335_795573_INTRON_1_423 3' exon 31.172428 138.548774 31.172428 108.376346 69.774387 1.84369603 0.092992 59 38 SH6175 6175 snR40 5' 25.01874 87.122277 56.0705085 1.748734495 0.092986 56 46 SH18213 18213 YML025C_13_225365_224406_INTRON_28_126 intron 29.74616 134.782956 29.74616 106.036796 67.891478 1.831815263 0.09297 78 49 SH11037 11037 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2071 2089 27.574305 101.353152 64.4637285 1.809315421 0.092928 100 39 SH9343 9343 RUF1 RUF1 291 308 25.772658 92.34936 59.061009 1.771300862 0.092918 160 67 SH2141 2141 Met1 3' flank 23.376457 76.10921 49.7428335 1.69673052 0.092892 71 48 SH14056 14056 MT COB Cytbi4 25.534338 115.22104 25.534338 90.686702 58.11052 1.764254762 0.092877 141 58 SH4471 4471 U3b (snR17b) 5' 24.761291 85.373859 55.067575 1.740895952 0.092836 179 61 SH11568 11568 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4726 4742 489.422993 713.894614 601.6588035 2.779350276 0.092832 23 43 SH5745 5745 snR35 5' 25.584684 91.043475 58.3140795 1.765773425 0.092813 18 103 SH18378 18378 YMR116C_13_500687_499455_INTRON_538_810 intron 24.243161 105.051704 24.243161 81.808543 53.025852 1.724487655 0.092808 163 42 SH9744 9744 RUF4 RUF4 496 510 26.410332 95.987521 61.1989265 1.786743804 0.092778 188 44 SH9410 9410 RUF1 3' 23.947299 79.809066 51.8781825 1.714984753 0.092768 125 84 SH7757 7757 snoRNA cluster1 snR76 349.212061 880.914821 349.212061 532.70276 440.9574105 2.644396646 0.092763 116 4 SH21347 21347 YPR132W spliced 74.69322 166.899221 120.7962205 2.082053346 0.092761 128 101 SH9618 9618 RUF3 3' 23.555888 77.242129 50.3990085 1.702421993 0.092731 59 88 SH11532 11532 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4546 4561 171.20299 296.759276 233.981133 2.36918084 0.092727 56 9 SH5893 5893 snR36 5' 27.615012 101.558834 64.586923 1.810144595 0.092721 176 77 SH3171 3171 Ser5 5' flank 23.794052 78.786675 51.2903635 1.710035777 0.092705 170 28 SH4655 4655 snR3 191-195 + 3' 191 22.610284 71.429194 47.019739 1.672280214 0.092668 77 14 SH17825 17825 YKR057W_11_551293_551878_INTRON_25_346 intron/exon 29.646837 134.513137 29.646837 105.8663 67.7565685 1.830951403 0.092652 141 9 SH11546 11546 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4616 4629 157.279905 278.258926 217.7694155 2.337996885 0.092644 126 63 SH19425 19425 YPR132W_16_794960_795762_INTRON_66_430 intron 25.557959 115.431516 25.557959 90.873557 58.215758 1.765040557 0.092637 39 83 SH18404 18404 YMR125W_13_517538_520445_INTRON_26_347 intron 24.926558 110.457904 24.926558 86.531346 55.728952 1.746080876 0.092567 69 11 SH1508 1508 Leu3 tRNA 11 23 80.573933 174.914049 127.743991 2.10634048 0.092533 33 103 SH5353 5353 snR30 3' 24.347331 82.545008 53.4461695 1.727916585 0.092515 38 92 SH17397 17397 YIL069C_9_232366_231550_INTRON_4_412 intron 34.029367 145.268991 34.029367 112.239624 73.1344955 1.86412227 0.09247 33 34 SH14430 14430 MT 21S rRNA 21S rRNA3 24.958 110.715088 24.958 86.757088 55.857544 1.747081836 0.092436 25 17 SH19990 19990 YBL092W spliced 28.166016 103.033742 65.599879 1.816903038 0.092429 19 82 SH12657 12657 MT_15S MT_15S 24.320941 105.693555 24.320941 82.372614 53.3467775 1.72710819 0.092421 75 65 SH11324 11324 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3506 3522 26193.48896 23842.12499 25017.80697 4.398249237 0.092414 61 6 SH18151 18151 YLR406C_12_931752_931062_INTRON_58_406 3' exon 25.339571 113.718801 25.339571 89.37923 57.3594005 1.758604604 0.092402 161 36 SH4842 4842 snR8 5' - 7 7 53.878297 138.979384 96.4288405 1.984206945 0.092402 58 35 SH17909 17909 YLR061W_12_263195_263949_INTRON_13_401 intron 25.272926 113.193917 25.272926 88.920991 57.0969585 1.756612974 0.092381 204 34 SH3511 3511 Tyr1 3' flank 24.361883 82.657281 53.509582 1.728431558 0.092369 146 25 SH3983 3983 RNase MRP 331-340 + 3' 331 25.330234 89.322433 57.3263335 1.758354166 0.092318 4 84 SH17472 17472 YJL001W_10_434855_435618_INTRON_66_181 5' exon 246.546233 642.120773 246.546233 396.57454 321.5603865 2.507262542 0.092287 11 98 SH15216 15216 MT COX3 cox3 26.645531 122.752109 26.645531 97.106578 61.8760545 1.791522613 0.092287 24 64 SH5288 5288 snR30 snR30 291 303 47.976212 131.092939 89.5345755 1.951990779 0.092268 178 16 SH16515 16515 YER117W_5_396765_397649_INTRON_43_513 intron 24.875158 110.084517 24.875158 86.209359 55.5422585 1.744623535 0.092257 55 34 SH4219 4219 telomerase RNA telomerase 131 147 25.852693 92.976607 59.41465 1.773893543 0.092244 134 40 SH2819 2819 Pro7 5' flank 23.513906 77.021303 50.2676045 1.701288189 0.092189 124 64 SH16680 16680 YGL030W_7_439087_439634_INTRON_4_233 intron 25.122124 112.024297 25.122124 87.902173 56.5121485 1.752141819 0.092178 16 94 SH3384 3384 Thr4 tRNA 6 22 33.15828 111.099119 72.1286995 1.858108102 0.092133 107 9 SH20173 20173 YDL137W spliced 30.561749 107.578809 69.070279 1.83929121 0.092103 72 16 SH15009 15009 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.140772 112.178199 25.140772 88.037427 56.5890995 1.752732783 0.092097 3 84 SH6539 6539 snR46 186-197 + 3' 186 24.76948 85.500271 55.1348755 1.741426398 0.09206 168 37 SH5250 5250 snR30 snR30 101 113 26.803959 97.854546 62.3292525 1.794691919 0.092057 54 59 SH10797 10797 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 871 890 24.848229 86.049105 55.448667 1.74389111 0.092001 80 7 SH18703 18703 YNL130C_14_381156_379555_INTRON_30_470 intron 25.405045 114.277559 25.405045 89.872514 57.6387795 1.760714776 0.091968 83 98 SH8420 8420 snoRNA cluster 5 snR190 52.763003 189.294194 52.763003 137.531191 95.147097 1.978395542 0.091965 189 27 SH21688 21688 copy of SH10243 24.106611 80.952601 52.529606 1.720404143 0.091963 172 70 SH2649 2649 Pro4 5' flank 28.027577 102.790433 65.409005 1.815637543 0.091949 18 81 SH7342 7342 snR68 5' 26.350195 95.775136 61.0626655 1.785775758 0.091929 6 101 SH18250 18250 YML034W_13_209525_212155_INTRON_1921_2046 intron 22.734758 93.972039 22.734758 72.237281 47.4860195 1.676565767 0.091918 46 104 SH19549 19549 CBP1 2.2 27.081332 99.148615 63.1149735 1.800132404 0.091897 129 24 SH10992 10992 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1846 1866 1607.277884 2050.840685 1829.059285 3.262227782 0.091864 77 51 SH11093 11093 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2351 2364 27.633595 101.714366 64.6739805 1.810729591 0.091854 49 56 SH3499 3499 Tyr1 tRNA-exon/intron 36 53 37.007862 116.225665 76.6167635 1.884323802 0.091821 78 34 SH5380 5380 snR31 5' 23.800555 78.903129 51.351842 1.710556026 0.091821 164 100 SH21327 21327 YPR043W spliced 75.140004 167.59916 121.369582 2.084109856 0.091803 31 99 SH1675 1675 Leu6 5' flank 24.468693 83.439999 53.954346 1.732026433 0.091801 169 57 SH17072 17072 YGR225W_7_945138_946919_INTRON_1184_1276 5' exon 40.887802 161.428668 40.887802 121.540866 81.214334 1.909632687 0.091722 74 91 SH13071 13071 MT COX1 Exon3 / cox1ai3 26.55554 122.2916 26.55554 96.73606 61.6458 1.789903493 0.09171 129 9 SH8759 8759 LSR1 / U2 RNA U2 436 453 27.271895 100.046587 63.659241 1.803861456 0.091701 198 49 SH2931 2931 Pro8 3' flank 170.180037 295.576714 232.8783755 2.367129163 0.091701 66 28 SH5267 5267 snR30 snR30 186 198 56.851945 143.005625 99.928785 1.999690607 0.091698 88 6 SH18758 18758 YNL162W_14_331319_332151_INTRON_5_516 intron 29.890806 135.275163 29.890806 106.384357 68.1375815 1.833386714 0.091663 174 98 SH13421 13421 MT COX1 intronic 23.825245 101.907621 23.825245 79.082376 51.4538105 1.711417543 0.091652 96 30 SH8037 8037 snoRNA cluster 2 snR55/intergenic 25.446445 114.63641 25.446445 90.189965 57.818205 1.762064605 0.091642 6 41 SH19300 19300 YPL198W_16_173151_174701_INTRON_12_420 intron 28.227139 130.42376 28.227139 103.196621 65.71188 1.817643892 0.091625 13 91 SH13128 13128 MT COX1 COX1ai3 23.192168 97.258736 23.192168 75.066568 49.129368 1.691341177 0.091571 182 78 SH13325 13325 MT COX1 COX1-ai5a 23.782046 101.584911 23.782046 78.802865 51.2924555 1.71005349 0.091535 172 102 SH3102 3102 Ser4 5' flank 25.760879 92.398012 59.0794455 1.771436411 0.091531 134 89 SH5733 5733 snR34 3' 24.79226 85.707107 55.2496835 1.742329794 0.091524 104 90 SH21432 21432 Tyr1_2 spliced 57.399211 143.750168 100.5746895 2.0024887 0.091523 34 46 SH9102 9102 snR14 / U4 RNA U4 126 142 34.395941 112.790898 73.5934195 1.866838983 0.091481 201 31 SH12690 12690 MT ORF 8 (hypothetical) 5' 24.305837 105.658757 24.305837 82.35292 53.3293785 1.726966522 0.091451 136 74 SH20555 20555 YHL001W spliced 27.565165 101.429161 64.497163 1.809540612 0.091439 3 64 SH13506 13506 MT COX1 intronic 141.016447 396.84669 141.016447 256.830243 198.923345 2.298685754 0.091434 187 26 SH5918 5918 snR36 snR36 46 67 23.915449 79.707865 51.811657 1.714427482 0.091413 76 14 SH12984 12984 MT COX1 COX1ai2 29.517074 134.206738 29.517074 105.689664 67.603369 1.829968339 0.091405 26 58 SH868 868 Glu2 3' flank 26.382875 95.965158 61.1740165 1.786566996 0.091399 86 34 SH7660 7660 snoRNA cluster1 5' / snR78 59.169176 204.271958 59.169176 146.102782 102.635979 2.011299629 0.091398 5 21 SH14927 14927 MT tRNA Asn 5' 25.988321 119.005145 25.988321 94.016824 60.0025725 1.77816987 0.091397 73 4 SH20645 20645 YHR203C spliced 34.057165 112.336611 73.196888 1.864492617 0.091393 126 4 SH244 244 Arg3 3' flank 24.945347 86.763996 55.8546715 1.747059502 0.09139 182 65 SH21734 21734 copy of SH12339 29.979344 106.567633 68.2734885 1.834252094 0.091382 121 15 SH16190 16190 YDR367W_4_1212837_1213603_INTRON_31_131 3' exon 26.636369 122.76991 26.636369 97.133541 61.884955 1.791585079 0.091379 119 69 SH3780 3780 Val4 3' flank 25.931175 93.614532 59.7728535 1.776503989 0.09137 39 66 SH13564 13564 MT COX1 Exon 6 23.472708 99.300266 23.472708 76.827558 50.150133 1.700272089 0.091364 66 31 SH19202 19202 YPL081W_16_404945_406039_INTRON_8_508 intron 24.27605 105.434889 24.27605 82.158839 53.2174445 1.726054016 0.09134 167 78 SH20503 20503 YGR001C spliced 26.631667 97.116374 61.8740205 1.791508337 0.09132 115 103 SH9449 9449 RUF2 RUF2 86 102 25.421752 90.049415 57.7355835 1.761443559 0.091307 63 82 SH5617 5617 snR34 snR34 6 22 23.910002 79.681655 51.7958285 1.714294784 0.091288 30 70 SH20259 20259 YDR397C spliced 27.579909 101.510646 64.5452775 1.809864472 0.091277 161 68 SH14513 14513 MT 21S rRNA 21S rRNA3 164.506889 451.614451 164.506889 288.107562 226.3072255 2.35469842 0.091248 212 102 SH13129 13129 MT COX1 COX1ai3 26.68368 123.045906 26.68368 97.362226 62.022953 1.79255244 0.091241 213 28 SH8066 8066 snoRNA cluster 2 snR61 24.661414 108.485158 24.661414 84.823744 54.742579 1.738325254 0.091217 21 35 SH2714 2714 Pro5 5' flank 22.934032 73.504691 48.2193615 1.683221455 0.09121 57 69 SH16709 16709 YGL031C_7_438393_437938_INTRON_1_456 intron 26.456067 121.774036 26.456067 96.317969 61.387018 1.788076537 0.091185 67 87 SH7955 7955 snoRNA cluster 2 5' 24.241178 105.176311 24.241178 81.935133 53.0881555 1.724997636 0.091173 78 80 SH14248 14248 MT tRNA Ser 3' 26.085389 119.702535 26.085389 94.617146 60.3512675 1.780686396 0.091162 148 60 SH2880 2880 Pro8 5' flank 25.037523 87.415004 56.2262635 1.749939224 0.09115 147 47 SH9322 9322 RUF1 RUF1 186 206 24.461781 83.451032 53.9564065 1.732043018 0.091129 206 22 SH7870 7870 snoRNA cluster1 snR73 152.364401 423.336443 152.364401 271.972042 212.1682215 2.326680336 0.091127 160 74 SH2823 2823 Pro7 5' flank 26.606664 97.01785 61.812257 1.791074602 0.091101 194 94 SH2326 2326 Phe3 5' flank 248.767423 399.814834 324.2911285 2.510935068 0.091068 156 60 SH8249 8249 snoRNA cluster4 5' 24.877282 110.206486 24.877282 86.329204 55.603243 1.745100122 0.091066 26 72 SH112 112 Arg1 5' flank 35.65666 114.500598 75.078629 1.875516333 0.091055 197 65 SH6256 6256 snR42 snR42 61 81 23.58515 77.557094 50.571122 1.703902589 0.091049 43 98 SH2072 2072 Lys4 tRNA-exon/intron 26 41 26.464958 96.369469 61.4172135 1.788290109 0.091045 20 93 SH18643 18643 YNL112W_14_413636_416278_INTRON_1274_2275 exon/intron 35.148973 147.977116 35.148973 113.828143 74.488558 1.872089567 0.091014 136 10 SH5101 5101 snR11 snR11 106 122 30.228513 107.058773 68.643643 1.836600324 0.091009 164 94 SH1208 1208 Ile1 tRNA 1 13 25.916207 93.546109 59.731158 1.776200934 0.09098 61 41 SH5764 5764 snR35 snR35 6 23 25.825208 92.906128 59.365668 1.773535359 0.090951 3 47 SH5398 5398 snR31 snR31 56 70 39.821647 120.147337 79.984492 1.903005791 0.090917 67 44 SH398 398 Asn1 71-74 + 3' flank 71 3' flank 23.231383 75.360617 49.296 1.692811681 0.090896 184 26 SH7458 7458 snR71 5' 27.972585 102.74056 65.3565725 1.815289268 0.090896 101 42 SH12374 12374 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.071416 132.938152 29.071416 104.866736 66.969076 1.825874307 0.090895 118 36 SH4869 4869 snR8 snR8 126 140 37.284528 116.63603 76.960279 1.886266633 0.090892 133 51 SH4566 4566 U3b (snR17b) U3b 386 402 33.761383 111.961535 72.861459 1.862497863 0.090881 13 103 SH19330 19330 YPL218W_16_138697_139408_INTRON_29_167 intron 27.321556 126.66351 27.321556 100.341954 63.831755 1.805036785 0.090875 96 45 SH7473 7473 snR71 5' - 1 -19 1 24.049428 80.659443 52.3544355 1.718953481 0.090849 155 77 SH2349 2349 Phe3 tRNA 71 87 69.395312 159.897934 114.646623 2.059361267 0.090842 197 49 SH12169 12169 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7731 7749 24.246076 81.998149 53.1221125 1.725275337 0.090828 86 45 SH21918 21918 copy of SH20001 29.51846 105.725124 67.621792 1.830086676 0.09082 44 18 SH5106 5106 snR11 snR11 131 148 24.495226 83.709139 54.1021825 1.733214785 0.090814 206 34 SH20698 20698 YJL001W spliced 26.441415 96.280348 61.3608815 1.78789159 0.09079 165 19 SH1697 1697 Leu6 tRNA 51 63 4413.41655 4992.373283 4702.894917 3.672365275 0.090789 15 96 SH6895 6895 snR56 3' 25.135162 88.124694 56.629928 1.753046009 0.090705 51 96 SH15634 15634 YBR186W_2_600511_602318_INTRON_1552_1664 5' exon 25.119886 112.140215 25.119886 88.020329 56.5701075 1.752587004 0.090699 55 89 SH8805 8805 LSR1 / U2 RNA U2 666 685 25.629347 91.55386 58.5916035 1.767835384 0.090696 152 103 SH9083 9083 snR14 / U4 RNA U4 31 45 29.25113 105.222115 67.2366225 1.827605889 0.090693 113 21 SH8112 8112 snoRNA cluster 3; 5' 22.847517 94.861553 22.847517 73.014036 47.9307765 1.680614465 0.090689 192 14 SH18218 18218 YML025C_13_225365_224406_INTRON_28_126 3' exon 30.524552 137.126231 30.524552 107.601679 69.0631155 1.839246166 0.090668 188 41 SH13952 13952 MT COB Cytbi3 24.028325 103.563331 24.028325 80.535006 52.2816655 1.718349414 0.090631 183 65 SH18952 18952 YOL127W_15_80347_81189_INTRON_14_427 intron 25.917126 118.505376 25.917126 93.58825 59.752688 1.776357447 0.090609 31 49 SH3665 3665 Val2 66-74 + 3' flank 66 24.518225 83.886399 54.202312 1.734017812 0.090603 158 51 SH3496 3496 Tyr1 tRNA 21 36 86.244283 182.806693 134.525488 2.128804576 0.090594 159 38 SH6402 6402 snR43 3' 26.436358 96.272349 61.3543535 1.787845384 0.090588 145 8 SH18495 18495 YMR194W_13_651144_651909_INTRON_17_479 intron 32.77969 142.458745 32.77969 110.679055 71.7293725 1.855697032 0.090586 65 44 SH14534 14534 MT 21S rRNA 21S rRNA3 25.040159 111.526075 25.040159 87.485916 56.2630375 1.750223175 0.090561 205 46 SH12409 12409 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.938203 132.570222 28.938203 104.632019 66.785111 1.824679652 0.090517 167 26 SH4164 4164 SRP RNA 3' 28.501332 103.794449 66.1478905 1.820515999 0.090424 39 93 SH6974 6974 snR60 5' 29.647888 105.994189 67.8210385 1.831364436 0.090413 10 77 SH15201 15201 MT COX3 cox3 27.307293 126.622265 27.307293 100.314972 63.8111325 1.804896452 0.090376 122 22 SH1590 1590 Leu4 3' flank 26.210448 95.249913 60.7301805 1.783404572 0.090371 70 103 SH8381 8381 snoRNA cluster 5 5' 38.595635 156.090229 38.595635 118.494594 78.5451145 1.895119177 0.090368 72 98 SH21317 21317 YPL249C-A spliced 25.944972 93.81102 59.877996 1.777267257 0.090343 19 98 SH18959 18959 YOL127W_15_80347_81189_INTRON_14_427 intron 23.963152 103.083625 23.963152 80.120473 52.0418125 1.716352414 0.090323 214 104 SH9030 9030 snR17a / U3a U3a 436 453 68.882581 159.255694 114.0691375 2.057168158 0.090265 8 38 SH18579 18579 YNL044W_14_545264_545873_INTRON_25_103 intron 23.542821 99.898762 23.542821 77.355941 50.449381 1.702855842 0.09022 157 91 SH6933 6933 snR58 snR58 26 43 25.418413 90.129087 57.77375 1.761730558 0.090194 4 97 SH5069 5069 snR11 5' 26.083769 94.682114 60.3829415 1.780914265 0.090187 103 98 SH19959 19959 YBL059C-A spliced 24.734436 85.423927 55.0791815 1.740987478 0.090182 198 5 SH8045 8045 snoRNA cluster 2 intergenic 24.169079 104.702463 24.169079 81.533384 52.8512315 1.723055111 0.090124 203 4 SH14102 14102 MT COB Cytbi4 24.019805 103.543032 24.019805 80.523227 52.271516 1.718265096 0.090086 32 32 SH8428 8428 snoRNA cluster 5 intergenic 200.121365 534.849219 200.121365 335.727854 267.9246095 2.428012606 0.09008 214 69 SH20926 20926 YLR367W spliced 25.065367 87.701958 56.3836625 1.751153283 0.09008 20 81 SH3568 3568 Tyr2 3' flank 26.476111 96.494071 61.485091 1.78876982 0.090076 15 11 SH11444 11444 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4106 4122 1579.275835 2021.312309 1800.294072 3.255343451 0.090069 44 42 SH9084 9084 snR14 / U4 RNA U4 36 52 39.526447 119.798439 79.662443 1.901253621 0.090016 210 21 SH13222 13222 MT COX1 COX1-ai4 27.247568 126.314513 27.247568 100.066945 63.6572565 1.803847917 0.090004 12 30 SH14078 14078 MT COB Cytbi4 25.227893 113.0561 25.227893 88.828207 57.02805 1.756088522 0.089991 6 18 SH7803 7803 snoRNA cluster1 snR75 25.650676 116.422004 25.650676 91.771328 58.711002 1.768719492 0.089973 11 39 SH4251 4251 telomerase RNA telomerase 291 309 25.38486 89.916608 57.650734 1.760804841 0.089971 188 33 SH14130 14130 MT COB intronic 24.378686 106.366684 24.378686 82.987998 53.683342 1.729839545 0.089882 117 95 SH7083 7083 snR63 5' 27.033427 99.083629 63.058528 1.799743829 0.08988 95 37 SH16555 16555 YER133W_5_432491_433954_INTRON_178_702 intron 26.02319 119.436832 26.02319 94.413642 60.218416 1.779729328 0.089853 167 41 SH7781 7781 snoRNA cluster1 intergenic 24.572251 107.898271 24.572251 84.32602 54.4491355 1.735990989 0.089853 56 64 SH14196 14196 MT COB Exon6 25.450972 114.83914 25.450972 90.388168 57.91957 1.762825329 0.089842 211 72 SH420 420 Asp1 5' flank 24.386724 83.046957 53.7168405 1.730110461 0.089839 50 10 SH9597 9597 RUF3 RUF3 371 392 24.851349 86.266429 55.558889 1.744753553 0.089782 15 19 SH18427 18427 YMR142C_13_551206_550205_INTRON_5_406 exon/intron 27.46309 127.549986 27.46309 101.086896 64.274993 1.808042038 0.089771 171 11 SH11118 11118 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2476 2492 97.002131 197.665817 147.333974 2.168302903 0.089768 135 101 SH21407 21407 Ser3 spliced 1193.506266 1572.83911 1383.172688 3.140876405 0.089767 101 19 SH4970 4970 snR9 3' 53.346351 138.469988 95.9081695 1.981855602 0.08972 124 47 SH1992 1992 Lys3 5' flank 27.662179 102.02093 64.8415545 1.811853418 0.089684 89 61 SH17275 17275 YHR141C_8_382752_381991_INTRON_5_445 5' exon 42.453418 165.264001 42.453418 123.810583 83.1320005 1.919768232 0.089675 131 70 SH21288 21288 YPL143W spliced 61.250347 149.018878 105.1346125 2.021745718 0.089633 97 38 SH21162 21162 YNL301C spliced 39.862379 120.280648 80.0715135 1.903478038 0.089631 116 101 SH18317 18317 YML085C_13_99400_97941_INTRON_26_141 exon/intron 25.33432 113.932119 25.33432 89.597799 57.4660595 1.759411418 0.089626 181 60 SH17331 17331 YIL018W_9_316766_317930_INTRON_5_404 5' exon 44.613088 170.341469 44.613088 126.728381 85.6707345 1.93283249 0.089572 81 27 SH20942 20942 YLR426W spliced 25.896624 93.543854 59.720239 1.776121537 0.089559 204 95 SH15737 15737 YCR028C-A_3_173432_172942_INTRON_243_325 5' exon 25.72993 117.09798 25.72993 92.36805 59.04899 1.771212474 0.08955 58 100 SH16760 16760 YGL087C_7_346902_346404_INTRON_12_96 intron 41.411827 162.798109 41.411827 122.386282 81.8990545 1.913278888 0.089549 50 37 SH8052 8052 snoRNA cluster 2 intergenic 28.651572 131.785889 28.651572 104.134317 66.3929445 1.82212193 0.08953 181 52 SH17345 17345 YIL018W_9_316766_317930_INTRON_5_404 intron 26.964791 124.758204 26.964791 98.793413 62.879102 1.798506331 0.089524 143 63 SH18891 18891 YOL120C_15_94401_93394_INTRON_113_559 5' exon 24.705698 108.989237 24.705698 85.283539 54.9946185 1.740320194 0.089511 172 23 SH2820 2820 Pro7 5' flank 24.029145 80.634932 52.3320385 1.718767652 0.089511 50 84 SH10530 10530 RUF8 RUF8 576 597 22.985096 73.944575 48.4648355 1.685426743 0.089509 74 94 SH11236 11236 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3066 3082 19370.01687 18316.97481 18843.49584 4.275161476 0.08947 66 55 SH2394 2394 Phe4 tRNA 21 33 34.58546 113.159233 73.8723465 1.868481894 0.089447 92 54 SH16457 16457 YER074W-A_0_5_307649_INTRON_95_196 intron/exon 30.029493 135.802276 30.029493 106.772783 68.401138 1.835063327 0.089433 75 18 SH19500 19500 YPT1 39.34797 119.591493 79.4697315 1.900201746 0.089388 152 76 SH3123 3123 Ser4 tRNA 21 33 29.37249 105.528633 67.4505615 1.828985569 0.08936 58 40 SH13705 13705 MT tRNAGlu (and 5' processing site for COB) tRNA 25.187778 112.798486 25.187778 88.610708 56.899243 1.755106488 0.08934 159 36 SH1109 1109 Gly4 tRNA 21 35 28.490517 103.833972 66.1622445 1.82061023 0.089326 163 8 SH19314 19314 YPL198W_16_173151_174701_INTRON_12_420 intron 28.93751 132.635106 28.93751 104.697596 66.817553 1.824890567 0.089312 27 59 SH21049 21049 YMR142C spliced 26.485962 96.597829 61.5418955 1.789170868 0.089306 10 74 SH14171 14171 MT COB intronic 23.17247 97.289522 23.17247 75.117052 49.144761 1.691477227 0.089295 146 70 SH296 296 Arg4 3' flank 22.577952 71.477944 47.027948 1.672356029 0.089281 59 19 SH10900 10900 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1386 1403 309.906456 481.730651 395.8185535 2.597496147 0.089274 70 69 SH2329 2329 Phe3 5' flank 26.617868 97.209177 61.9135225 1.791785513 0.089268 153 88 SH3079 3079 Ser3 91-101 + 3' flank 91 32.192227 109.962099 71.077163 1.851730085 0.089251 86 14 SH8533 8533 snR19 / U1 RNA U1 161 178 35.748929 114.724969 75.236949 1.876431176 0.089231 204 8 SH8243 8243 snoRNA cluster4 5' 24.014698 103.575372 24.014698 80.560674 52.287686 1.718399422 0.089231 110 57 SH6939 6939 snR58 snR58 56 68 27.064092 99.27941 63.171751 1.800522915 0.089191 25 64 SH12244 12244 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.469691 107.14746 24.469691 83.677769 54.07373 1.732986328 0.08916 151 34 SH13164 13164 MT COX1 intronic 25.468046 115.041571 25.468046 90.573525 58.0207855 1.763583604 0.089127 53 70 SH21595 21595 copy of SH6471 25.717486 92.320647 59.0190665 1.770992336 0.089126 62 82 SH19888 19888 Positive Control 4 105.885727 209.94038 157.9130535 2.198418031 0.089092 197 75 SH8898 8898 LSR1 / U2 RNA U2 1131 1147 23.520224 77.303389 50.4118065 1.702532261 0.089075 86 26 SH5709 5709 snR34 snR34 466 486 24.154825 81.528459 52.841642 1.722976304 0.089043 117 22 SH1021 1021 Gly2 3' flank 24.363892 82.961212 53.662552 1.729671322 0.08902 188 66 SH582 582 Gln1 5' flank 26.005148 94.368557 60.1868525 1.779501632 0.088993 73 49 SH5941 5941 snR36 snR36 161 178 25.590614 91.443078 58.516846 1.76728091 0.088987 73 67 SH10011 10011 RUF6 5' 23.977327 80.328919 52.153123 1.71728032 0.08898 69 85 SH6254 6254 snR42 snR42 51 67 23.456155 76.910407 50.183281 1.700559052 0.088959 29 80 SH17279 17279 YHR141C_8_382752_381991_INTRON_5_445 intron 32.08907 140.92906 32.08907 109.83999 70.96453 1.851041331 0.088926 182 46 SH3681 3681 Val2 3' flank 25.424519 90.293298 57.8589085 1.762370236 0.088879 122 7 SH17167 17167 YHR016C_8_138446_136872_INTRON_48_215 intron 24.8463 110.158872 24.8463 86.312572 55.579436 1.744914135 0.088873 10 44 SH11038 11038 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2076 2091 185.728339 316.843669 251.286004 2.4001683 0.088862 69 50 SH3 3 Ala1 5' flank 25.392027 90.073998 57.7330125 1.76142422 0.088806 132 104 SH1419 1419 Leu1 3' flank 34.800984 113.485115 74.1430495 1.870070445 0.088802 76 8 SH1793 1793 Leu8 5' flank - tRNA8 8 46.435959 129.24363 87.8397945 1.943691311 0.08879 63 77 SH3197 3197 Ser5 3' flank 25.503524 90.853957 58.1787405 1.764764315 0.088773 63 72 SH2296 2296 Phe2 tRNA 76 91 57.405465 143.972292 100.6888785 2.002981504 0.088725 113 78 SH20041 20041 YBR189W spliced 50.147675 134.227574 92.1876245 1.964672624 0.08872 183 85 SH20120 20120 YDL079C spliced 248.272309 399.751953 324.012131 2.51056127 0.088706 10 72 SH2430 2430 Phe5 5' flank 25.155888 88.450104 56.802996 1.754371243 0.088687 2 47 SH15172 15172 MT COX3 5' 33.225197 143.598326 33.225197 111.373129 72.299163 1.85913327 0.088686 94 56 SH4600 4600 snR3 5' 108.131577 213.066316 160.5989465 2.205742692 0.088669 207 7 SH7433 7433 snR69 snR69 66 83 121.889741 231.704398 176.7970695 2.247475062 0.088666 178 19 SH2456 2456 Phe5 tRNA-intron/exon 51 66 1951.104195 2441.297864 2196.20103 3.341672091 0.088646 171 93 SH4233 4233 telomerase RNA telomerase 201 213 59.114755 146.245497 102.680126 2.011486393 0.088638 150 75 SH7883 7883 snoRNA cluster1 snR73 845.551417 2002.007749 845.551417 1157.456332 1001.503875 3.000652634 0.088619 76 97 SH14499 14499 MT 21S rRNA 21S rRNA3 795.423137 1890.952435 795.423137 1096.529298 945.9762175 2.975880218 0.088589 15 44 SH10527 10527 RUF8 RUF8 561 578 23.244176 75.617623 49.4308995 1.693998513 0.088565 6 54 SH1270 1270 Ile2 tRNA-intron 46 61 25.568452 91.328331 58.4483915 1.766772564 0.088555 198 78 SH7144 7144 snR63 snR63 226 244 29.415755 105.658348 67.5370515 1.829542096 0.088519 123 75 SH16705 16705 YGL031C_7_438393_437938_INTRON_1_456 intron 26.006492 119.430988 26.006492 94.424496 60.215494 1.779708254 0.088515 8 94 SH8356 8356 snoRNA cluster4 3' 26.490641 122.175122 26.490641 96.684481 61.587561 1.789493005 0.088448 93 18 SH7721 7721 snoRNA cluster1 snR77 67.325053 223.622496 67.325053 157.297443 112.311248 2.050423253 0.088413 131 75 SH18314 18314 YML073C_13_124172_123227_INTRON_16_430 3' exon 31.989552 140.725641 31.989552 109.736089 70.8628205 1.850418434 0.088346 95 20 SH4151 4151 SRP RNA SRP RNA 646 663 28.114479 103.157659 65.636069 1.817142563 0.088331 52 104 SH17470 17470 YIL148W_9_68708_69528_INTRON_9_442 3' exon 55.014763 194.793245 55.014763 140.778482 97.8966225 1.990767709 0.088326 149 103 SH4632 4632 snR3 snR3 76 93 28.783403 104.456688 66.6200455 1.823604925 0.088305 67 46 SH3531 3531 Tyr2 5' flank 25.260113 89.204974 57.2325435 1.757643047 0.088304 202 85 SH4339 4339 telomerase RNA telomerase 731 750 24.560212 84.381328 54.47077 1.736163515 0.088281 54 36 SH2005 2005 Lys3 5' flank 23.940341 80.139834 52.0400875 1.716338018 0.088254 184 62 SH13954 13954 MT COB Cytbi3 24.081322 104.186715 24.081322 81.105393 52.5933575 1.720930897 0.088136 209 67 SH422 422 Asp1 5' flank 25.545587 91.208355 58.376971 1.766241557 0.088127 76 82 SH5983 5983 snR36 3' 24.350264 82.951887 53.6510755 1.729578432 0.088047 202 94 SH6311 6311 snR42 336-351 + 3' 336 61.375349 149.317435 105.346392 2.022619666 0.088041 109 42 SH633 633 Gln2 5' flank 23.667469 78.32579 50.9966295 1.707541473 0.088021 81 50 SH297 297 Arg4 3' flank 23.597575 77.873153 50.735364 1.705310781 0.088016 85 40 SH21273 21273 YPL090C spliced 27.804436 102.57101 65.187723 1.814165811 0.08797 27 4 SH12535 12535 MT_ORF6 + ORF7 (hypothetical) ORF6/7 25.167036 112.759429 25.167036 88.592393 56.8797145 1.754957408 0.087967 44 84 SH3463 3463 Trp1 3' flank 37.771552 117.489209 77.6303805 1.890031715 0.087923 36 88 SH8208 8208 snoRNA cluster 3; snR51 22.762796 94.465001 22.762796 72.702205 47.7325005 1.678814186 0.087894 96 95 SH16577 16577 YER179W_5_548416_549512_INTRON_133_224 intron 30.263725 136.566868 30.263725 107.303143 68.783434 1.837483854 0.08788 157 61 SH15675 15675 YBR191W_2_606228_607098_INTRON_12_399 intron 31.049114 138.524237 31.049114 108.475123 69.7621185 1.843619661 0.087869 32 87 SH15439 15439 YBL072C_2_89435_88518_INTRON_1_308 intron/exon 23.384193 98.930072 23.384193 76.545879 49.965036 1.698666205 0.087848 158 16 SH19700 19700 Negative Control 26.319256 95.946757 61.1330065 1.786275755 0.087754 186 12 SH7450 7450 snR69 3' 67.806737 158.013102 112.9099195 2.052732098 0.087748 44 68 SH16342 16342 YDR500C_4_1450856_1450201_INTRON_8_396 intron 24.788871 109.810154 24.788871 86.021283 55.405077 1.743549563 0.087746 187 64 SH5504 5504 snR32 181-188+3' 181 24.120133 81.405995 52.763064 1.722330007 0.087707 116 33 SH19089 19089 YOR312C_15_901173_900242_INTRON_2_427 5' exon 94.663008 288.32619 94.663008 194.663182 144.663095 2.160357752 0.08769 85 80 SH12181 12181 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7791 7809 29.649856 106.151694 67.900775 1.831874731 0.087682 116 6 SH3549 3549 Tyr2 tRNA 16 32 551.823146 795.430843 673.6269945 2.828419482 0.087676 202 31 SH18914 18914 YOL120C_15_94401_93394_INTRON_113_559 intron/exon 24.275141 105.744838 24.275141 82.469697 53.372419 1.727316887 0.087658 19 59 SH3265 3265 Thr2 5' flank 26.139832 95.128217 60.6340245 1.782716395 0.087655 149 93 SH5484 5484 snR32 snR32 81 98 25.005 87.508989 56.2569945 1.750176526 0.087619 22 24 SH10612 10612 RUF8 3' 32.180963 110.034688 71.1078255 1.851917398 0.0876 170 65 SH1185 1185 His1 3' flank 28.124357 103.217971 65.671164 1.817374714 0.087582 130 87 SH14006 14006 MT COB intronic 26.698008 123.408809 26.698008 97.710801 62.2044045 1.793821137 0.087551 97 47 SH9282 9282 RUF1 5' - 5 -14 5 26.246481 95.62701 60.9367455 1.784879256 0.087548 209 65 SH8652 8652 LSR1 / U2 RNA 5' 28.141793 103.254954 65.6983735 1.817554618 0.087527 186 87 SH5357 5357 snR30 3' 28.835289 104.602444 66.7188665 1.824248659 0.087481 62 95 SH713 713 Gln3 3' flank 23.035649 74.408788 48.7222185 1.687727055 0.087467 124 79 SH16758 16758 YGL087C_7_346902_346404_INTRON_12_96 5' exon 28.606057 131.766771 28.606057 104.160714 66.3833855 1.822059397 0.087461 87 28 SH8960 8960 snR17a / U3a U3a 86 103 24.418712 83.48077 53.949741 1.731989364 0.087389 152 34 SH3786 3786 Val4 3' flank 38.176357 118.089244 78.1328005 1.892833391 0.08737 90 15 SH6458 6458 snR45 snR45 136 150 162.282124 285.836701 224.0594125 2.350363193 0.08735 105 46 SH8447 8447 snoRNA cluster 5 snR128 1416.969289 3253.641062 1416.969289 1837.671773 1627.320531 3.211473104 0.087316 79 47 SH12082 12082 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7296 7315 31.474513 109.091054 70.2827835 1.846848953 0.087277 130 60 SH9005 9005 snR17a / U3a U3a 311 323 32.46804 110.439048 71.453544 1.854023774 0.08727 119 94 SH16311 16311 YDR450W_4_1359912_1360787_INTRON_48_482 3' exon 25.465294 115.193489 25.465294 90.728195 58.0967445 1.764151797 0.087257 136 52 SH21929 21929 copy of SH21369 52.769966 137.881005 95.3254855 1.979209026 0.087246 62 25 SH10041 10041 RUF6 RUF6 51 67 201.926552 338.723921 270.3252365 2.431886592 0.08724 80 18 SH11269 11269 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3231 3248 28.988511 104.911185 66.949848 1.825749595 0.087236 25 79 SH7049 7049 snR62 snR62 36 57 35.542565 114.563629 75.053097 1.875368618 0.087231 46 15 SH20350 20350 YER102W spliced 36.576736 115.927773 76.2522545 1.882252689 0.087197 160 55 SH7203 7203 snR64 snR64 81 93 26.545641 97.035033 61.790337 1.790920564 0.087176 100 85 SH12112 12112 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7446 7463 2989.507016 3556.719542 3273.113279 3.514961036 0.087174 201 71 SH19134 19134 YPL075W_16_412249_415357_INTRON_9_759 intron 24.4738 107.354201 24.4738 83.880401 54.1771005 1.733815758 0.087172 46 96 SH5446 5446 snR31 3' 27.842635 102.69153 65.2670825 1.8146942 0.087132 203 7 SH20033 20033 YBR181C spliced 26.264016 95.742633 61.0033245 1.785353503 0.087084 22 29 SH1606 1606 Leu4 3' flank 28.481564 103.948368 66.214966 1.82095616 0.086937 26 24 SH8549 8549 snR19 / U1 RNA U1 241 253 32.866908 110.991474 71.929191 1.856905176 0.086927 199 91 SH2124 2124 Met1 tRNA 6 22 503.739023 734.890255 619.314639 2.791911346 0.086922 180 62 SH4400 4400 telomerase RNA telomerase 1036 1054 24.109916 81.40554 52.757728 1.722286084 0.086894 196 66 SH10256 10256 RUF6 3' 25.388233 90.233744 57.8109885 1.762010395 0.086793 176 17 SH16437 16437 YER074W_5_306319_307192_INTRON_4_469 intron 26.602591 122.931481 26.602591 97.32889 61.9657405 1.792151644 0.086774 126 58 SH11643 11643 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5101 5114 56.342874 142.696477 99.5196755 1.997908951 0.086756 123 34 SH4254 4254 telomerase RNA telomerase 306 323 26.635778 97.48427 62.060024 1.792811939 0.08675 23 41 SH11654 11654 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5156 5173 145.016652 262.90584 203.961246 2.309547656 0.086748 81 22 SH20279 20279 YDR450W spliced 23.927304 80.178816 52.05306 1.716446265 0.086738 174 23 SH4518 4518 U3b (snR17b) U3b 146 163 90.803223 189.496562 140.1498925 2.146592769 0.086722 37 35 SH17323 17323 YIL004C_9_348502_347943_INTRON_12_142 intron 25.049954 111.948651 25.049954 87.898697 56.4743255 1.751851053 0.08672 62 40 SH9191 9191 snR7 U5 RNA 3' 22.842208 73.275531 48.0588695 1.681773551 0.086705 44 22 SH8422 8422 snoRNA cluster 5 snR190 111.162202 327.599936 111.162202 217.437734 164.299968 2.215637479 0.086692 191 39 SH7965 7965 snoRNA cluster 2 5' 24.099972 104.456293 24.099972 81.356321 52.7281465 1.722042505 0.086677 159 54 SH16532 16532 YER131W_5_423587_424307_INTRON_1_361 intron 85.334151 266.323421 85.334151 181.98927 133.6617105 2.126007015 0.086643 77 12 SH20849 20849 YLR048W spliced 51.333818 135.991058 93.662438 1.971565458 0.08664 193 53 SH5434 5434 snR31 3' 26.057989 94.828175 60.443082 1.781346601 0.08663 161 61 SH14523 14523 MT 21S rRNA 21S rRNA3 1043.327882 2439.692131 1043.327882 1397.364249 1220.346066 3.086483005 0.086603 170 92 SH9213 9213 snR6 / U6 RNA 5' 23.517515 77.479343 50.498429 1.703277867 0.086603 35 5 SH14569 14569 MT 21S rRNA 21S rRNA3 281.637183 725.451824 281.637183 444.814641 363.225912 2.560176823 0.0866 71 19 SH10622 10622 RUF8 3' 26.759737 98.06996 62.4148485 1.795287921 0.086595 88 76 SH12200 12200 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7886 7904 30.225131 107.304916 68.7650235 1.837367596 0.08657 23 33 SH13567 13567 MT COX1 Exon 6 24.934636 111.057448 24.934636 87.122812 56.028724 1.748410732 0.086546 52 103 SH19877 19877 Negative Control 25.656613 92.136376 58.8964945 1.770089446 0.086546 211 54 SH2547 2547 Pro2 5' flank 23.880533 79.880497 51.880515 1.715004279 0.086526 200 44 SH17790 17790 YKL186C_11_93537_92746_INTRON_71_233 intron 28.971117 132.889197 28.971117 104.91808 66.9445985 1.825715541 0.086511 163 12 SH4907 4907 snR9 5' 25.628754 91.946489 58.7876215 1.769285889 0.086481 50 30 SH280 280 Arg4 5- flank - tRNA10 5' flank 10 28.877095 104.7397 66.8083975 1.824831055 0.086462 103 13 SH7823 7823 snoRNA cluster1 intergenic 24.302528 106.065411 24.302528 82.762883 53.5327055 1.728619193 0.086442 114 14 SH12659 12659 MT_15S MT_15S 25.052095 111.993054 25.052095 87.940959 56.496527 1.752021751 0.086415 44 85 SH1963 1963 Lys2 tRNA 16 28 27.652606 102.238644 64.945625 1.812549901 0.08641 46 22 SH8320 8320 snoRNA cluster4 intergenic 25.113957 112.482452 25.113957 88.368495 56.741226 1.753898715 0.0864 214 2 SH5197 5197 snR13 3' 25.695058 92.421215 59.0581365 1.771279739 0.086398 155 99 SH14677 14677 MT 21S rRNA 21S rRNA4 25.063967 112.091369 25.063967 88.027402 56.5456845 1.752399466 0.086362 99 7 SH9610 9610 RUF3 3' 24.787211 86.134055 55.460633 1.743984822 0.086342 178 57 SH6220 6220 snR40 3' 26.589129 97.301924 61.9455265 1.792009949 0.086312 126 22 SH10037 10037 RUF6 RUF6 31 48 25.762928 92.919065 59.3409965 1.773354835 0.086202 104 46 SH5964 5964 snR36 snR36 276 292 24.300689 82.772903 53.536796 1.728652377 0.08618 85 38 SH2587 2587 Pro2 3' flank 23.976843 80.562311 52.269577 1.718248986 0.086168 143 103 SH5409 5409 snR31 snR31 111 132 26.934255 98.913765 62.92401 1.798816391 0.086147 154 85 SH1948 1948 Lys2 5' flank 23.502071 77.418441 50.460256 1.702949449 0.086138 152 15 SH13271 13271 MT COX1 intronic/exon5 57.567693 200.955588 57.567693 144.387895 100.977794 2.004225879 0.086126 78 90 SH13166 13166 MT COX1 intronic 28.101501 130.355443 28.101501 103.253942 65.6777215 1.817418078 0.086111 160 52 SH21179 21179 YNR053C spliced 35.567945 114.663179 75.115562 1.875729921 0.086058 160 98 SH8004 8004 snoRNA cluster 2 intergenic 24.276018 105.891385 24.276018 82.615367 53.4456925 1.727912709 0.086041 156 87 SH8000 8000 snoRNA cluster 2 intergenic 27.743742 129.301903 27.743742 102.558161 65.1509515 1.813920763 0.086017 176 78 SH14070 14070 MT COB Cytbi4 25.785199 117.891009 25.785199 93.10581 59.4455045 1.774119017 0.085896 15 74 SH13679 13679 MT ORF 5 (hypothetical) 5' 25.05293 112.048491 25.05293 87.995561 56.5242455 1.752234774 0.085874 54 14 SH8591 8591 snR19 / U1 RNA U1 451 468 24.990145 87.565177 56.277661 1.750336039 0.085858 25 10 SH511 511 Asp2 3' flank 29.366185 105.7176 67.5418925 1.829573225 0.085774 186 15 SH8638 8638 snR19 / U1 RNA 3' 23.633512 78.283608 50.95856 1.707217147 0.085765 190 6 SH10620 10620 RUF8 3' 26.635349 97.561724 62.0985365 1.793081365 0.085711 147 33 SH3080 3080 Ser3 96-101 + 3' flank 96 23.51969 77.569386 50.544538 1.703674231 0.085627 33 52 SH12310 12310 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.623402 123.137967 26.623402 97.514565 62.0689835 1.792874633 0.085605 9 74 SH17066 17066 YGR214W_7_920570_921783_INTRON_91_545 intron 23.177097 97.604541 23.177097 75.427444 49.3022705 1.69286692 0.085586 146 9 SH8546 8546 snR19 / U1 RNA U1 226 240 39.32174 119.788327 79.5550335 1.900667663 0.085521 212 90 SH18998 18998 YOR122C_15_552886_552297_INTRON_14_222 intron 24.540792 108.034915 24.540792 84.494123 54.5174575 1.736535594 0.085478 26 62 SH16446 16446 YER074W_5_306319_307192_INTRON_4_469 intron 24.417646 107.059205 24.417646 83.641559 54.0296025 1.732631772 0.085465 34 22 SH7617 7617 snR189 snR189 156 175 24.32596 83.009384 53.667672 1.729712757 0.085458 170 85 SH11249 11249 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3131 3148 23247.2461 21563.27431 22405.26021 4.350349992 0.085449 49 85 SH19929 19929 YBL018C spliced 24.896515 86.959949 55.928232 1.747631091 0.085447 212 83 SH16588 16588 YFL034C-A_6_64931_64242_INTRON_13_333 intron 24.207383 105.405034 24.207383 82.197651 53.202517 1.725932179 0.085423 59 47 SH6691 6691 snR49 5' 25.281941 89.622187 57.452064 1.759305636 0.085406 16 40 SH577 577 Gln1 5' flank 63.635944 152.587321 108.1116325 2.033872425 0.085403 194 33 SH8192 8192 snoRNA cluster 3; intergenic 24.302517 106.164151 24.302517 82.861634 53.5820755 1.729019532 0.085301 125 51 SH9721 9721 RUF4 RUF4 381 400 25.81321 93.363083 59.5881465 1.775159877 0.08528 25 39 SH6440 6440 snR45 snR45 46 65 27.506874 101.649393 64.5781335 1.810085488 0.085265 180 80 SH8061 8061 snoRNA cluster 2 intergenic/snR61 27.718372 129.270127 27.718372 102.551755 65.1350635 1.813814841 0.085219 97 4 SH14372 14372 MT ORF9 and ORF10 (hypothetical) ORF10 29.86608 135.568173 29.86608 106.702093 68.2840865 1.834319504 0.085216 191 86 SH16949 16949 YGR027C_7_534779_534126_INTRON_1_312 intron 22.576255 93.340014 22.576255 71.763759 47.170007 1.673665941 0.085184 130 56 SH16602 16602 YFL034C-A_6_64931_64242_INTRON_13_333 3' exon 24.884578 110.789113 24.884578 86.904535 55.8945565 1.747369515 0.085152 198 79 SH9745 9745 RUF4 RUF4 501 515 99.241627 201.282533 150.26208 2.176849396 0.085139 67 99 SH19557 19557 CBP1 2.2 25.024237 87.864468 56.4443525 1.751620495 0.085137 91 25 SH5897 5897 snR36 5' 26.670135 97.768444 62.2192895 1.793925047 0.085116 137 34 SH21002 21002 YML085C spliced 36.456925 115.889252 76.1730885 1.881801565 0.085114 208 97 SH1791 1791 Leu8 5' flank 26.171889 95.469944 60.8209165 1.78405296 0.085059 55 10 SH5981 5981 snR36 3' 25.333452 90.014699 57.6740755 1.760980642 0.085035 67 2 SH1249 1249 Ile2 5' flank 25.57749 91.723202 58.650346 1.768270579 0.085025 140 89 SH12109 12109 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7431 7448 54.577858 140.441891 97.5098745 1.989048597 0.085022 103 34 SH130 130 Arg1 26-40 26 40 37.364565 117.087976 77.2262705 1.887765062 0.084995 122 44 SH15516 15516 YBR048W_2_332790_333771_INTRON_46_556 intron 25.607436 116.549022 25.607436 91.941586 58.774511 1.769189025 0.084943 49 84 SH5140 5140 snR11 3' 58.062217 145.139223 101.60072 2.006896786 0.084927 95 73 SH3823 3823 RNaseP RNaseP 81 95 42.259985 123.84656 83.0532725 1.919356749 0.084901 102 102 SH15125 15125 MT tRNA Phe 5' 24.668297 109.103267 24.668297 85.43497 55.0516335 1.74077021 0.084892 129 94 SH16696 16696 YGL031C_7_438393_437938_INTRON_1_456 intron 27.482363 128.047787 27.482363 101.565424 64.5238935 1.809720566 0.084882 67 74 SH8709 8709 LSR1 / U2 RNA U2 186 203 23.888025 80.069247 51.978636 1.715824879 0.084875 62 38 SH5563 5563 snR33 snR33 101 118 24.693854 85.616657 55.1552555 1.741586901 0.08486 105 48 SH11385 11385 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3811 3831 32154.47966 28697.74725 30426.11345 4.48324648 0.084837 99 74 SH13656 13656 MT ATP6 ATP6 24.428341 107.202599 24.428341 83.774258 54.1012995 1.733207697 0.084795 156 8 SH12853 12853 MT COX1 COX1ai1 57.758179 201.503379 57.758179 144.7452 101.2516895 2.005402279 0.084783 55 27 SH646 646 Gln2 tRNA 16 32 25.189073 89.039747 57.11441 1.756745695 0.08473 77 84 SH19411 19411 YPR098C_16_729525_728944_INTRON_48_143 intron 22.482308 92.7124 22.482308 71.230092 46.8562 1.670767065 0.084683 144 11 SH12919 12919 MT COX1 COX1ai2 30.876136 138.282185 30.876136 108.406049 69.6410925 1.842865576 0.084622 31 50 SH15968 15968 YDL130W_4_229906_230527_INTRON_115_415 intron/exon 26.623954 123.217243 26.623954 97.593289 62.1086215 1.79315189 0.08461 87 73 SH9808 9808 RUF4 3' 43.723529 125.856236 84.7898825 1.928344033 0.084605 31 55 SH21106 21106 YNL069C spliced 24.749618 86.030674 55.390146 1.74343251 0.084601 147 87 SH7804 7804 snoRNA cluster1 snR75/intergenic 23.943753 103.414771 23.943753 80.471018 52.2073855 1.717731945 0.084587 141 95 SH16141 16141 YDR092W_4_629869_630598_INTRON_31_298 intron 30.633881 137.705731 30.633881 108.07185 69.3528655 1.84106441 0.084572 109 8 SH6913 6913 snR58 5' 26.213188 95.701767 60.9574775 1.785026987 0.084508 53 38 SH20073 20073 YCR028C-A spliced 26.090044 95.135017 60.6125305 1.782562416 0.084493 191 91 SH49 49 Ala1 3' flank 24.410344 83.677585 54.0439645 1.7327472 0.084476 55 61 SH13302 13302 MT COX1 COX1-ai5a 26.173624 120.696134 26.173624 95.52251 60.848067 1.784246786 0.084464 40 65 SH1496 1496 Leu3 5' flank 29.903071 106.817054 68.3600625 1.834802451 0.084427 104 14 SH5088 5088 snR11 snR11 41 58 24.084242 81.440903 52.7625725 1.722325962 0.084424 166 34 SH21283 21283 YPL143W spliced 28.78376 104.674638 66.729199 1.824315912 0.08439 31 65 SH16574 16574 YER179W_5_548416_549512_INTRON_133_224 5' exon 184.91495 500.547297 184.91495 316.632347 250.7736485 2.399281899 0.084379 178 68 SH5507 5507 snR32 3' 24.057957 81.26739 52.6626735 1.721502903 0.084355 99 29 SH18307 18307 YML073C_13_124172_123227_INTRON_16_430 intron 27.987632 130.115296 27.987632 103.127664 65.557648 1.816623364 0.08435 9 77 SH16199 16199 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 25.272117 113.92346 25.272117 89.651343 57.46173 1.759378697 0.084346 75 71 SH3326 3326 Thr3 5' flank 25.728531 92.86284 59.2956855 1.773023094 0.084239 164 10 SH18855 18855 YNR053C_14_723108_721117_INTRON_811_1341 intron 26.743928 123.924808 26.743928 98.18088 62.462404 1.795618695 0.084202 194 18 SH9231 9231 snR6 / U6 RNA U6 26 45 25.909085 94.149337 60.029211 1.778362635 0.084189 141 3 SH4920 4920 snR9 snR9 6 27 60.82232 148.874541 104.8484305 2.020561934 0.084167 79 75 SH8650 8650 snR19 / U1 RNA 3' 24.01955 81.02646 52.523005 1.720349565 0.084111 165 40 SH2086 2086 Lys4 96 + 3' flank 96 117 22.364399 70.577217 46.470808 1.667180224 0.084038 150 99 SH8540 8540 snR19 / U1 RNA U1 196 215 24.951653 87.468802 56.2102275 1.749815343 0.083986 20 76 SH18554 18554 YMR230W_13_732413_733140_INTRON_53_462 3' exon 32.885987 143.061323 32.885987 111.175336 72.0306615 1.857517403 0.083977 93 70 SH12396 12396 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.208571 97.955529 23.208571 75.746958 49.4777645 1.694410069 0.083967 159 62 SH18086 18086 YLR344W_12_819312_820142_INTRON_20_466 intron/exon 24.653084 109.066161 24.653084 85.413077 55.0330805 1.740623823 0.083947 134 78 SH4592 4592 U3b (snR17b) 3' 25.682137 92.5639 59.1230185 1.771756599 0.083933 39 20 SH3299 3299 Thr2 3' flank 24.748582 86.093455 55.4210185 1.743674503 0.083821 175 27 SH21074 21074 YMR230W spliced 24.76463 86.203597 55.4841135 1.744168651 0.083814 212 22 SH1506 1506 Leu3 tRNA 1 13 200.300141 337.278143 268.789142 2.429411721 0.083805 63 40 SH12658 12658 MT_15S MT_15S 24.734525 109.73095 24.734525 85.996425 55.365475 1.74323903 0.083804 9 65 SH18648 18648 YNL112W_14_413636_416278_INTRON_1274_2275 intron 30.190368 136.587469 30.190368 107.397101 68.7937345 1.837548886 0.0838 202 86 SH7396 7396 snR68 3' 26.646671 97.761461 62.204066 1.793818773 0.083789 28 97 SH9613 9613 RUF3 3' 24.561108 84.786854 54.673981 1.737780698 0.083769 170 69 SH9107 9107 snR14 / U4 RNA 151-160 + 3' 151 24.035438 81.165744 52.600591 1.720990624 0.083745 59 28 SH21414 21414 Ser4 spliced 27.276148 100.693083 63.9846155 1.806075565 0.083743 76 67 SH19104 19104 YOR312C_15_901173_900242_INTRON_2_427 intron 41.092893 162.398815 41.092893 122.305922 81.6994075 1.912218907 0.083743 144 28 SH18295 18295 YML073C_13_124172_123227_INTRON_16_430 intron 42.982734 166.890812 42.982734 124.908078 83.945406 1.923996934 0.083738 43 12 SH21351 21351 YPR132W spliced 26.383535 96.548602 61.4660685 1.788635436 0.083714 117 64 SH4045 4045 SRP RNA SRP RNA 116 134 25.114683 88.619964 56.8673235 1.754862788 0.083685 53 80 SH11922 11922 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6496 6511 40.380923 121.35001 80.8654665 1.907763096 0.083644 151 59 SH15758 15758 YCR031C_3_178212_177492_INTRON_8_314 intron 25.040936 112.158203 25.040936 88.117267 56.5791015 1.752656046 0.083611 63 9 SH14292 14292 MT VAR1 includes 5’ processing site VAR1 24.867046 110.789625 24.867046 86.922579 55.8948125 1.747371504 0.083603 27 17 SH12421 12421 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.799129 118.223299 25.799129 93.42417 59.6116495 1.775331139 0.0836 180 43 SH2379 2379 Phe4 5' flank 24.374248 83.5047 53.939474 1.731906707 0.083598 88 20 SH3272 3272 Thr2 5' flank 82.28986 178.161072 130.225466 2.11469592 0.083592 189 81 SH11580 11580 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4786 4802 38.373463 118.589685 78.481574 1.894767705 0.08359 85 53 SH5209 5209 snR13 3' 23.920919 80.402547 52.161733 1.717352012 0.08356 127 35 SH5853 5853 snR35 snR35 451 470 26.91692 99.034283 62.9756015 1.799172324 0.083558 102 51 SH3570 3570 Tyr2 3' flank 30.27159 107.56587 68.91873 1.838337266 0.083533 184 24 SH9043 9043 snR17a / U3a 3' 23.48551 77.518993 50.5022515 1.70331074 0.083517 5 76 SH13470 13470 MT COX1 intronic 25.483514 115.689962 25.483514 91.206448 58.344981 1.766003503 0.083499 132 25 SH13991 13991 MT COB intronic 23.910009 103.247359 23.910009 80.33735 52.1236795 1.717035066 0.083455 143 4 SH1852 1852 Leu9 tRNA 1 13 36956.92392 32466.3192 34711.62156 4.540474902 0.083452 26 11 SH5408 5408 snR31 snR31 106 127 26.963925 99.261745 63.112835 1.800117689 0.083444 178 25 SH444 444 Asp1 tRNA 41 53 124.772247 236.316046 180.5441465 2.256583413 0.083443 150 7 SH12242 12242 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.079588 112.480125 25.079588 88.400537 56.7400625 1.75388981 0.08343 167 73 SH3360 3360 Thr3 3' flank 31.372348 109.157967 70.2651575 1.846740024 0.083352 160 45 SH4173 4173 telomerase RNA 5' 26.608923 97.621911 62.115417 1.793199405 0.083326 23 18 SH11208 11208 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2926 2944 24.345255 83.328165 53.83671 1.731078512 0.083324 182 6 SH16662 16662 YFR032C-A_6_223758_223245_INTRON_1_331 intron 108.07494 320.738751 108.07494 213.663811 160.8693755 2.206473376 0.083276 9 98 SH13552 13552 MT COX1 intronic 30.341458 137.056015 30.341458 107.714557 69.0280075 1.839025338 0.083239 157 38 SH12066 12066 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7216 7236 30.853547 108.448103 69.650825 1.842926265 0.083222 53 71 SH10350 10350 RUF7 RUF7 361 382 23.913565 80.382156 52.1478605 1.717236495 0.083209 108 85 SH5972 5972 snR36 snR36 316 332 25.283296 89.835459 57.5593775 1.760116088 0.083192 149 3 SH7233 7233 snR65 5' 24.793907 86.459118 55.6265125 1.745281833 0.083186 106 8 SH6112 6112 snR39B 5' 24.579443 84.968982 54.7742125 1.738576142 0.083158 77 98 SH7755 7755 snoRNA cluster1 snR76 407.17788 1018.428645 407.17788 612.250765 509.7143225 2.707326837 0.083156 182 73 SH6030 6030 snR37 snR37 66 84 23.805384 79.660524 51.732954 1.713767278 0.08308 99 41 SH8333 8333 snoRNA cluster4 snR53 66.156634 221.308839 66.156634 156.152205 111.1544195 2.045926735 0.083058 71 100 SH3960 3960 RNase MRP RNaseMRP 216 232 25.548214 91.70701 58.627612 1.768102205 0.083009 173 44 SH2581 2581 Pro2 3' flank 23.818592 79.761573 51.7900825 1.714246603 0.082939 196 78 SH11814 11814 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5956 5973 718.713953 1006.366299 862.540126 2.935779308 0.082881 206 3 SH6064 6064 snR37 snR37 236 252 23.87382 80.142101 52.0079605 1.716069823 0.082858 187 56 SH5186 5186 snR13 snR13 86 102 43.936721 126.258121 85.097421 1.929916398 0.082817 108 58 SH12444 12444 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 46.885435 176.145381 46.885435 130.259946 88.5726905 1.947299837 0.082772 171 24 SH17024 17024 YGR148C_7_788173_787307_INTRON_1_392 intron 24.083243 104.658852 24.083243 81.575609 52.829426 1.722875892 0.082764 96 100 SH20124 20124 YDL079C spliced 31.03223 108.721008 69.876619 1.844331883 0.082742 203 31 SH14442 14442 MT 21S rRNA 21S rRNA3 24.222836 105.759752 24.222836 82.536916 53.379876 1.727377561 0.082717 212 7 SH9190 9190 snR7 U5 RNA 3' 23.670938 78.786217 51.2285775 1.709512297 0.082701 53 24 SH7092 7092 snR63 5' 24.698665 85.844158 55.2714115 1.742500556 0.082699 170 2 SH17570 17570 YJL189W_10_75932_76473_INTRON_7_392 intron 25.061234 112.401867 25.061234 88.340633 56.7009335 1.753590209 0.082692 50 25 SH8313 8313 snoRNA cluster4 intergenic 22.873763 95.641766 22.873763 73.768003 48.320883 1.684134862 0.082681 11 92 SH2422 2422 Phe4 3' flank 30.707705 108.276303 69.492004 1.841934836 0.082629 32 101 SH19003 19003 YOR122C_15_552886_552297_INTRON_14_222 intron 24.394908 107.128315 24.394908 83.733407 54.0641575 1.73290944 0.082618 54 6 SH20443 20443 YGL087C spliced 25.549838 91.755397 58.6526175 1.768287398 0.082616 144 74 SH5742 5742 snR34 3' 24.775391 86.385594 55.5804925 1.744922391 0.082588 181 101 SH17373 17373 YIL052C_9_257061_256224_INTRON_38_509 intron 26.723207 123.933783 26.723207 98.210576 62.4668915 1.795649895 0.082568 88 29 SH10751 10751 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 641 658 73.368045 166.024327 119.696186 2.078080312 0.082559 210 24 SH16117 16117 YDR064W_4_579453_580447_INTRON_22_560 intron 23.839087 102.770992 23.839087 79.931905 51.885496 1.715045973 0.082559 10 33 SH2269 2269 Phe2 5' flank 25.478198 91.262477 58.3703375 1.766192204 0.082502 3 52 SH14137 14137 MT COB intronic 23.810999 102.55893 23.810999 79.747931 51.779465 1.714157559 0.082487 74 80 SH20092 20092 YDL012C spliced 24.315026 83.196606 53.755816 1.730425459 0.082437 205 42 SH8727 8727 LSR1 / U2 RNA U2 276 293 24.597256 85.161649 54.8794525 1.73940977 0.08239 205 58 SH16013 16013 YDL137W_4_216158_217074_INTRON_1_332 intron 24.244975 105.963131 24.244975 82.718156 53.4815655 1.728204111 0.082383 140 27 SH14100 14100 MT COB Cytbi4 25.397157 115.10517 25.397157 90.708013 58.052585 1.763821563 0.082355 112 58 SH5225 5225 snR30 5' 24.720097 86.027024 55.3735605 1.743302449 0.082339 27 41 SH18865 18865 YNR053C_14_723108_721117_INTRON_811_1341 intron 30.386393 137.229987 30.386393 107.843594 69.1149935 1.839572272 0.082317 212 96 SH9313 9313 RUF1 RUF1 141 158 24.42652 83.979479 54.2029995 1.73402332 0.082312 89 102 SH11926 11926 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6516 6529 49.452294 133.746566 91.59943 1.961892771 0.082244 150 96 SH5889 5889 snR36 5' 27.156396 100.253239 63.7048175 1.804172276 0.082235 101 28 SH886 886 Glu3 5' flank 27.615499 102.402304 65.0089015 1.812972828 0.082208 119 41 SH1200 1200 Ile1 5' flank 23.727278 79.20616 51.466719 1.711526483 0.082207 14 28 SH20841 20841 YLL050C spliced 39.475782 120.201 79.838391 1.902211776 0.082197 60 55 SH7611 7611 snR189 snR189 126 144 24.552526 84.866909 54.7097175 1.738064472 0.082192 119 58 SH4585 4585 U3b (snR17b) 3' 25.408785 90.808428 58.1086065 1.764240461 0.082151 69 60 SH819 819 Glu1 3' flank 24.598806 85.197343 54.8980745 1.739557112 0.082111 92 49 SH6744 6744 snR49 3' 25.954329 94.674941 60.314635 1.780422704 0.082096 101 77 SH17777 17777 YKL180W_11_109271_110131_INTRON_310_615 intron 26.074426 120.317891 26.074426 95.243465 60.6589455 1.782894856 0.082076 178 83 SH6355 6355 snR43 snR43 16 33 25.818665 93.710545 59.764605 1.776444053 0.082063 119 10 SH12983 12983 MT COX1 COX1ai2 26.739539 124.065336 26.739539 98.325797 62.532668 1.796106959 0.082058 5 80 SH3207 3207 Ser5 3' flank 23.288943 76.39879 49.8438665 1.697611724 0.082023 208 18 SH15026 15026 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 31.889266 140.824966 31.889266 109.9357 70.912483 1.850722692 0.082022 27 22 SH4898 4898 snR8 3' 112.292897 219.590751 165.941824 2.219955859 0.082014 13 47 SH17488 17488 YJL024C_10_396288_395627_INTRON_23_99 intron/exon 35.988249 150.43622 35.988249 115.447971 75.71811 1.879199765 0.082013 207 79 SH2071 2071 Lys4 tRNA 21 33 32.16073 110.304963 71.2328465 1.852680299 0.082012 193 100 SH15747 15747 YCR031C_3_178212_177492_INTRON_8_314 5' exon 91.893123 282.394381 91.893123 191.501258 141.6971905 2.151361239 0.081992 101 14 SH9221 9221 snR6 / U6 RNA 5' 24.22028 82.584833 53.4025565 1.727562048 0.081959 143 46 SH3660 3660 Val2 tRNA 41 53 30.376742 107.850464 69.113603 1.839563534 0.081926 24 85 SH20459 20459 YGL178W spliced 27.138913 100.197713 63.668313 1.803923343 0.081903 135 31 SH11368 11368 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3726 3742 5819.857689 6399.551335 6109.704512 3.786020207 0.081897 91 20 SH2927 2927 Pro8 3' flank 30.089709 107.315296 68.7025025 1.836972557 0.081891 77 65 SH20721 20721 YJL136C spliced 24.653636 85.601769 55.1277025 1.741369893 0.081881 161 25 SH15818 15818 YDL064W_4_337486_338069_INTRON_39_148 5' exon 28.805073 132.66151 28.805073 104.856437 66.830755 1.824976367 0.081862 103 49 SH9419 9419 RUF2 5' 24.28416 83.034221 53.6591905 1.729644117 0.081854 5 87 SH6971 6971 snR60 5' 25.837039 93.862036 59.8495375 1.777060799 0.081848 148 34 SH580 580 Gln1 5' flank 25.624316 92.357903 58.9911095 1.770786564 0.081798 83 29 SH20382 20382 YFL034C-A spliced 32.032871 110.145177 71.089024 1.851802552 0.081755 188 75 SH19465 19465 ADH1 25.487471 91.39762 58.4425455 1.766729124 0.081755 206 55 SH9617 9617 RUF3 3' 24.126531 81.958351 53.042441 1.724623502 0.081755 187 49 SH2322 2322 Phe3 5' flank 25.772446 93.411694 59.59207 1.775188471 0.081753 11 18 SH17657 17657 YKL002W_11_437416_438182_INTRON_61_128 exon/intron 25.58392 116.661081 25.58392 92.077161 58.8305405 1.769602838 0.081751 10 40 SH6546 6546 snR46 3' 25.516578 91.6046 58.560589 1.767605436 0.081731 125 2 SH16628 16628 YFL039C_6_54695_53260_INTRON_11_318 intron 26.925006 125.14108 26.925006 99.216074 63.07054 1.799826549 0.081704 27 85 SH15981 15981 YDL136W_4_217600_218367_INTRON_4_408 intron 27.639503 129.196124 27.639503 102.556621 65.098062 1.81356806 0.081688 117 44 SH7723 7723 snoRNA cluster1 snR77/intergenic 29.223478 133.897449 29.223478 105.673971 67.4487245 1.828973741 0.081673 95 57 SH21212 21212 YOR096W spliced 27.588603 102.321615 64.955109 1.812613316 0.081643 68 92 SH16159 16159 YDR129C_4_715372_713333_INTRON_22_132 intron 22.350287 92.012482 22.350287 70.662195 46.506241 1.667511238 0.081642 115 55 SH8615 8615 snR19 / U1 RNA U1 571 587 26.15487 95.648093 60.9014815 1.784627857 0.081635 41 76 SH10608 10608 RUF8 3' 24.802959 86.659617 55.731288 1.74609908 0.081626 136 14 SH9669 9669 RUF4 RUF4 121 139 27.55844 102.182063 64.8702515 1.812045582 0.08162 26 75 SH14675 14675 MT 21S rRNA 21S rRNA4 25.125555 113.010888 25.125555 88.885333 57.005444 1.755916333 0.081598 195 62 SH2352 2352 Phe3 86-91 + 3' flank 86 23.75945 79.473831 51.6166405 1.712789735 0.081596 188 10 SH16045 16045 YDL191W_4_117665_118518_INTRON_4_494 intron 24.153826 105.314893 24.153826 82.161067 53.1574465 1.725564111 0.081575 56 71 SH13442 13442 MT COX1 intronic 24.91338 111.338372 24.91338 87.424992 56.169186 1.74949813 0.081542 200 22 SH6735 6735 snR49 3' 32.200649 110.384952 71.2928005 1.853045675 0.081526 13 86 SH21010 21010 YML124C spliced 23.775231 79.586506 51.6808685 1.713329803 0.081523 174 103 SH7652 7652 snoRNA cluster1 5' 24.124313 105.088073 24.124313 81.96376 53.0440365 1.724636565 0.081514 4 83 SH11438 11438 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4076 4091 31.299763 109.156453 70.228108 1.846510968 0.081488 187 46 SH20581 20581 YHR016C spliced 106.023091 211.068903 158.545997 2.200155281 0.081482 192 82 SH20540 20540 YGR183C spliced 24.130801 82.01124 53.0710205 1.724857439 0.081479 133 37 SH15314 15314 YAL003W_1_142172_143158_INTRON_81_446 intron 23.452417 99.926061 23.452417 77.473644 50.4630305 1.702973328 0.081425 173 76 SH5480 5480 snR32 snR32 61 77 36.126579 115.664204 75.8953915 1.880215406 0.08142 193 65 SH18682 18682 YNL112W_14_413636_416278_INTRON_1274_2275 intron 24.003613 104.149679 24.003613 81.146066 52.5748395 1.720777956 0.08142 46 26 SH1796 1796 Leu8 tRNA 6 18 5982.708343 6558.496926 6270.602635 3.797309281 0.081392 171 58 SH1838 1838 Leu9 5' flank 26.439212 96.983112 61.711162 1.790363724 0.081387 201 62 SH8934 8934 snR17a / U3a 5' 24.175516 82.329748 53.252632 1.726341078 0.081346 122 79 SH13018 13018 MT COX1 COX1ai2 28.090483 130.587542 28.090483 103.497059 65.793771 1.818184779 0.081288 36 30 SH7500 7500 snR71 3' 29.525577 106.275526 67.9005515 1.831873302 0.081279 66 39 SH5595 5595 snR33 3' 24.766399 86.442282 55.6043405 1.745108694 0.081255 152 37 SH510 510 Asp2 3' flank 25.290649 90.067123 57.678886 1.761016864 0.081237 209 6 SH16221 16221 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 33.663534 145.022425 33.663534 112.358891 73.0112125 1.863389561 0.081198 171 68 SH5013 5013 snR10 snR10 96 117 24.021683 81.288495 52.655089 1.721440351 0.081196 188 65 SH14311 14311 MT VAR1 includes 5’ processing site VAR1 24.120342 105.084833 24.120342 81.964491 53.0424165 1.724623301 0.081188 71 41 SH7884 7884 snoRNA cluster1 snR73 156.066307 433.637204 156.066307 278.570897 217.318602 2.337096903 0.081184 36 18 SH7962 7962 snoRNA cluster 2 5' 30.324492 137.124741 30.324492 107.800249 69.0623705 1.839241481 0.081181 196 22 SH16653 16653 YFR031C-A_6_221405_220494_INTRON_5_151 intron/exon 23.738765 102.109086 23.738765 79.370321 51.554543 1.712266941 0.081162 104 23 SH18222 18222 YML026C_13_223828_222987_INTRON_48_448 exon/intron 25.057077 112.510862 25.057077 88.453785 56.755431 1.754007426 0.081127 145 24 SH14866 14866 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 / 3' 23.183333 97.991851 23.183333 75.808518 49.4959255 1.694569449 0.081101 151 14 SH10580 10580 RUF8 RUF8 826 843 24.692999 85.948219 55.320609 1.742886952 0.081098 91 35 SH7372 7372 snR68 snR68 81 103 22.437758 71.219096 46.828427 1.67050957 0.081093 59 49 SH13660 13660 MT ATP6 ATP6 25.219212 113.808496 25.219212 89.589284 57.404248 1.758944032 0.081017 171 101 SH2715 2715 Pro5 5' flank 24.541992 84.898994 54.720493 1.738150001 0.081003 93 55 SH9630 9630 RUF4 5' 27.922038 103.184069 65.5530535 1.816592926 0.08097 90 17 SH18897 18897 YOL120C_15_94401_93394_INTRON_113_559 intron 25.752063 118.095016 25.752063 93.342953 59.547508 1.774863591 0.080959 206 74 SH16341 16341 YDR500C_4_1450856_1450201_INTRON_8_396 intron 920.355737 2173.556662 920.355737 1254.200925 1087.278331 3.036340733 0.080938 20 79 SH2739 2739 Pro5 tRNA 76 88 61.59556 150.193171 105.8943655 2.024872852 0.080929 160 49 SH566 566 Cys1 3' flank 24.357896 83.625504 53.9917 1.732327002 0.080921 111 101 SH9148 9148 snR7 U5 RNA U5 11 26 70.615292 162.424832 116.520062 2.066400707 0.080875 154 74 SH11448 11448 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4126 4143 50.056216 134.654989 92.3556025 1.965463246 0.080869 123 68 SH17705 17705 YKL081W_11_282533_284097_INTRON_206_531 intron 24.432403 107.582591 24.432403 84.150188 54.2912955 1.734730205 0.080836 148 65 SH10377 10377 RUF7 496-500 + 3' 496 35.271776 114.5619 74.916838 1.874579439 0.080822 183 86 SH1246 1246 Ile2 5' flank 44.845422 127.605431 86.2254265 1.935635351 0.0808 182 24 SH19512 19512 ACT1 23.269268 76.36978 49.819524 1.697399574 0.080798 3 28 SH10474 10474 RUF8 RUF8 296 315 25.977193 94.890999 60.434096 1.78128203 0.080783 21 88 SH7835 7835 snoRNA cluster1 snR74 32.672797 142.734355 32.672797 111.061558 71.8671775 1.856530589 0.080781 182 103 SH12174 12174 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7756 7773 51.587171 136.755814 94.1714925 1.973919453 0.080745 111 8 SH18177 18177 YLR448W_12_1028848_1029762_INTRON_16_399 intron 27.858148 129.931828 27.858148 103.07368 65.465914 1.816015236 0.080693 60 85 SH1839 1839 Leu9 5' flank 25.719114 93.136697 59.4279055 1.773990424 0.080669 168 31 SH14587 14587 MT 21S rRNA Sce1 endonuc 26.954944 125.391301 26.954944 99.436357 63.1956505 1.800687189 0.080668 124 22 SH13512 13512 MT COX1 intronic 24.519832 108.298076 24.519832 84.778244 54.649038 1.737582521 0.08062 127 13 SH15746 15746 YCR031C_3_178212_177492_INTRON_8_314 5' exon 27.234397 126.98112 27.234397 100.746723 63.99056 1.806115911 0.080597 88 98 SH9550 9550 RUF3 RUF3 136 153 25.566657 92.067351 58.817004 1.769502899 0.080566 95 27 SH3260 3260 Thr2 5' flank 22.498855 71.627768 47.0633115 1.672682482 0.080558 165 102 SH5502 5502 snR32 snR32 171 188 25.330879 90.415303 57.873091 1.762476679 0.080513 182 20 SH15765 15765 YCR031C_3_178212_177492_INTRON_8_314 3' exon 24.192857 105.713818 24.192857 82.520961 53.356909 1.727190663 0.080513 46 7 SH4079 4079 SRP RNA SRP RNA 286 300 54.654104 140.878205 97.7661545 1.990188533 0.080464 112 11 SH4185 4185 telomerase RNA 5' 25.482348 91.483028 58.482688 1.767027326 0.080461 30 37 SH14277 14277 MT VAR1 includes 5’ processing site VAR1 27.020361 125.778505 27.020361 99.758144 63.3892525 1.802015631 0.080455 167 94 SH17392 17392 YIL069C_9_232366_231550_INTRON_4_412 intron 25.442772 115.6484 25.442772 91.205628 58.3242 1.765848791 0.080451 51 65 SH13610 13610 MT ATP8/AAP1 3' 24.937883 111.629948 24.937883 87.692065 56.314974 1.750623888 0.080447 140 5 SH10373 10373 RUF7 RUF7 476 488 45.204503 128.106134 86.6553185 1.937795223 0.080445 56 101 SH17666 17666 YKL006C-A_11_430270_429836_INTRON_37_177 intron 41.169543 162.78873 41.169543 122.619187 81.894365 1.91325402 0.080412 192 71 SH9360 9360 RUF1 RUF1 376 392 23.696441 79.147506 51.4219735 1.71114874 0.080406 43 103 SH1988 1988 Lys2 3' flank 740.802984 1035.279665 888.0413245 2.948433176 0.080378 144 73 SH20851 20851 YLR061W spliced 43.388612 125.676322 84.532467 1.927023544 0.080339 150 10 SH7537 7537 snR79 snR79 26 42 27.172962 100.486177 63.8295695 1.805021915 0.080259 9 44 SH449 449 Asp1 66-71 + 3' flank 66 3' flank 25.720407 93.186216 59.4533115 1.774176049 0.080247 193 35 SH6683 6683 snR49 5' 24.247792 82.924821 53.5863065 1.729053824 0.080222 130 64 SH9200 9200 snR7 U5 RNA 3' 26.358935 96.699572 61.5292535 1.789081646 0.08022 200 21 SH17312 17312 YHR203C_8_505526_504472_INTRON_15_283 intron 27.829274 129.873026 27.829274 103.043752 65.436513 1.815820148 0.080201 52 13 SH11539 11539 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4581 4594 30983.29897 27860.52955 29421.91426 4.468670926 0.08017 144 22 SH10145 10145 RUF6 RUF6 571 588 29.370643 106.041713 67.706178 1.830628299 0.080159 165 43 SH3683 3683 Val2 3' flank 26.462607 97.188258 61.8254325 1.791167163 0.080118 203 61 SH7020 7020 snR60 3' 24.230163 82.812588 53.5213755 1.728527266 0.080114 197 28 SH12449 12449 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.019722 143.581664 33.019722 111.561942 72.290832 1.859083223 0.080113 123 5 SH6794 6794 snR50 3' 24.885319 87.360514 56.1229165 1.749140232 0.080108 59 96 SH3025 3025 Ser2 3' flank 24.518725 84.816359 54.667542 1.737729547 0.080104 43 79 SH6452 6452 snR45 snR45 106 120 30.468835 108.075099 69.271967 1.84055752 0.080095 57 101 SH1045 1045 Gly3 5' flank 25.628517 92.550304 59.0894105 1.771509657 0.080083 97 7 SH12363 12363 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.665007 109.508156 24.665007 85.843149 55.254078 1.742364336 0.080079 130 59 SH7780 7780 snoRNA cluster1 intergenic 24.812939 110.679553 24.812939 86.866614 55.8397765 1.746943671 0.080069 47 12 SH17234 17234 YHR077C_8_255757_252375_INTRON_7_119 intron/exon 129.508131 371.651566 129.508131 243.143435 186.325783 2.270272955 0.080062 62 19 SH14473 14473 MT 21S rRNA 21S rRNA3 25.610029 117.034618 25.610029 92.424589 59.017309 1.770979403 0.080029 139 18 SH20861 20861 YLR078C spliced 26.830912 98.908292 62.869602 1.798440711 0.080025 17 56 SH15109 15109 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " intronic 492.277015 1214.785303 492.277015 723.508288 607.8926515 2.783826893 0.080022 214 62 SH7381 7381 snR68 126-136 + 3' 126 24.199547 82.611012 53.4052795 1.727584192 0.080003 20 4 SH12701 12701 MT ORF 8 (hypothetical) ORF8 25.573359 116.745127 25.573359 92.171768 58.8725635 1.769912947 0.079961 103 80 SH4081 4081 SRP RNA SRP RNA 296 312 100.538891 203.672164 152.1055275 2.182144997 0.079949 105 34 SH17645 17645 YJR145C_10_702761_701720_INTRON_15_270 intron 58.890682 204.516378 58.890682 146.625696 102.758189 2.011816442 0.079942 125 77 SH10099 10099 RUF6 RUF6 341 360 24.958328 87.878684 56.418506 1.751421582 0.079941 147 98 SH789 789 Glu1 5' flank 24.32089 83.455269 53.8880795 1.731492706 0.079935 201 48 SH15322 15322 YAL003W_1_142172_143158_INTRON_81_446 intron 28.854313 132.913609 28.854313 105.059296 66.9568045 1.825794719 0.079932 84 67 SH17117 17117 YHR010W_8_126513_127484_INTRON_32_592 intron 23.160615 97.918739 23.160615 75.758124 49.4593695 1.694248576 0.079903 152 83 SH16382 16382 YER007C-A_5_166884_166236_INTRON_12_114 intron 25.607763 117.029591 25.607763 92.421828 59.0147955 1.770960907 0.079889 35 46 SH8629 8629 snR19 / U1 RNA U1 641 660 24.196863 82.603112 53.3999875 1.727541155 0.079881 190 86 SH20454 20454 YGL137W spliced 24.697859 86.093091 55.395475 1.743474291 0.079868 89 9 SH19560 19560 CBP1 2.2 23.882196 80.450573 52.1663845 1.717390738 0.079863 160 9 SH4591 4591 U3b (snR17b) 3' 29.118207 105.572871 67.345539 1.828308833 0.079862 66 47 SH21160 21160 YNL301C spliced 29.119143 105.575376 67.3472595 1.828319928 0.07985 18 78 SH13878 13878 MT COB intronic 26.567305 123.2631 26.567305 97.695795 62.13155 1.793312188 0.079841 38 65 SH13857 13857 MT COB Cytbi2 25.636273 117.265442 25.636273 92.629169 59.132721 1.771827864 0.079831 20 68 SH20096 20096 YDL029W spliced 26.71127 98.368791 62.5400305 1.796158089 0.079797 4 68 SH15219 15219 MT COX3 cox3 26.0503 120.353127 26.0503 95.302827 60.6765635 1.783020976 0.079791 9 75 SH6655 6655 snR48 101-113 + 3' 101 25.330786 90.483818 57.907302 1.762733331 0.079767 65 79 SH20947 20947 YLR448W spliced 44.455922 127.152919 85.8044205 1.933509663 0.079752 161 20 SH17202 17202 YHR021C_8_148660_147862_INTRON_4_553 3' exon 38.236567 155.864477 38.236567 118.62791 78.4322385 1.89449461 0.07974 94 62 SH21873 21873 copy of SH18603 84.829477 182.017863 133.42367 2.125232882 0.079733 130 14 SH19445 19445 CYC1 25.720114 93.233559 59.4768365 1.774347861 0.07973 116 86 SH4766 4766 snR5 snR5 1 20 46.166807 129.481536 87.8241715 1.943614062 0.07971 39 26 SH5588 5588 snR33 3' 23.401296 77.288707 50.3450015 1.701956358 0.079661 151 88 SH21865 21865 copy of SH19500 38.496068 118.996441 78.7462545 1.896229906 0.079649 163 21 SH20606 20606 YHR077C spliced 94.753269 195.701624 145.2274465 2.162048701 0.079643 201 24 SH6464 6464 snR45 166-172 + 3' 166 23.613024 78.651071 51.1320475 1.708693184 0.079616 160 28 SH3691 3691 Val3 5' flank 24.937442 87.770876 56.354159 1.750925973 0.079538 56 74 SH8885 8885 LSR1 / U2 RNA U2 1066 1083 25.375559 90.820849 58.098204 1.764162707 0.079518 35 45 SH7407 7407 snR69 5' 24.218474 82.783946 53.50121 1.728363604 0.079513 78 83 SH18507 18507 YMR194W_13_651144_651909_INTRON_17_479 intron/exon 24.28566 106.533959 24.28566 83.248299 53.7669795 1.73051564 0.079512 121 64 SH7694 7694 snoRNA cluster1 intergenic 33.832003 145.515638 33.832003 112.683635 73.257819 1.864853985 0.079504 7 65 SH16228 16228 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 84.852827 265.926761 84.852827 182.073934 133.4633805 2.125362121 0.079496 152 17 SH21340 21340 YPR098C spliced 23.322643 76.805765 50.064204 1.699527315 0.079496 66 97 SH3353 3353 Thr3 3' flank 25.133769 89.13714 57.1354545 1.756905686 0.079465 75 86 SH9751 9751 RUF4 RUF4 531 545 43.583105 125.998045 84.790575 1.92834758 0.079432 176 63 SH15334 15334 YAL030W_1_87288_87754_INTRON_103_215 5' exon 163.003296 450.183689 163.003296 288.180393 225.5918445 2.353323395 0.079432 183 38 SH21887 21887 copy of SH18602 26.088188 95.507559 60.7978735 1.783888389 0.079397 85 24 SH7300 7300 snR66 5' - 11 -9 11 29.992418 107.272706 68.632562 1.836530211 0.079396 45 22 SH14815 14815 "MT tRNAs (Lys, Arg1, Gly)" tRNA / intergenic 123.667679 358.060393 123.667679 235.392714 179.5301965 2.254137506 0.079387 63 87 SH5468 5468 snR32 snR32 1 20 57.103555 144.282686 100.6931205 2.0029998 0.079384 91 49 SH3494 3494 Tyr1 tRNA 11 27 48.00224 132.004089 90.0031645 1.954257779 0.079374 147 97 SH8162 8162 snoRNA cluster 3; snR70 114.763036 337.079448 114.763036 223.316412 169.039724 2.227988775 0.079351 122 73 SH627 627 Gln2 5' flank 25.732596 93.369077 59.5508365 1.774887866 0.079241 15 102 SH1327 1327 Ile3 tRNA 16 31 29.533245 106.405389 67.969317 1.832312906 0.079238 171 102 SH11319 11319 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3481 3498 13132.20459 13101.07039 13116.63749 4.117822516 0.079167 181 43 SH1152 1152 His1 5' flank - tRNA2 2 23.410053 77.382575 50.396314 1.702398773 0.079166 23 38 SH10031 10031 RUF6 RUF6 1 17 27.560576 102.391991 64.9762835 1.812754867 0.079129 167 90 SH5663 5663 snR34 snR34 236 251 25.80983 93.930286 59.870058 1.777209679 0.079126 119 51 SH2856 2856 Pro7 tRNA 86 100 31.033498 108.913167 69.9733325 1.844932558 0.079123 148 46 SH1657 1657 Leu5 3' flank 24.601162 85.483239 55.0422005 1.740695788 0.079094 110 22 SH6892 6892 snR56 3' 24.882807 87.43529 56.1590485 1.749419741 0.079081 149 32 SH20093 20093 YDL012C spliced 29.917027 107.147304 68.5321655 1.835894455 0.079079 104 35 SH1774 1774 Leu7 3' flank 27.445053 101.856381 64.650717 1.810573346 0.079047 18 89 SH11997 11997 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6871 6884 48.027061 132.06222 90.0446405 1.954457869 0.079012 183 73 SH7915 7915 snoRNA cluster1 intergenic/snR72 27.742916 129.681707 27.742916 102.938791 65.3408535 1.815184803 0.079008 197 17 SH13992 13992 MT COB intronic 23.815766 102.886949 23.815766 80.071183 51.9434745 1.715530996 0.079007 153 5 SH8693 8693 LSR1 / U2 RNA U2 106 122 46.057927 129.378704 87.7183155 1.943090283 0.079006 96 8 SH17099 17099 YHL001W_8_104270_105084_INTRON_130_527 intron 24.547201 108.66163 24.547201 85.114429 54.830815 1.739024701 0.07899 26 5 SH16280 16280 YDR447C_4_1355542_1354818_INTRON_4_317 intron 25.248358 114.229766 25.248358 89.981408 57.614883 1.760534684 0.078967 147 55 SH16253 16253 YDR397C_4_1266887_1266355_INTRON_38_129 intron 31.006636 138.891486 31.006636 108.88485 69.945743 1.844761288 0.078953 75 9 SH8620 8620 snR19 / U1 RNA U1 596 610 26.991803 99.745011 63.368407 1.80187279 0.078919 93 80 SH16164 16164 YDR139C_4_733917_733611_INTRON_150_222 5' exon 58.111599 202.780701 58.111599 145.669102 101.8903505 2.008133056 0.078917 94 2 SH13584 13584 MT COX1 Exon 6 69.840192 230.397623 69.840192 161.557431 115.6988115 2.063328898 0.07886 3 62 SH4719 4719 snR4 snR4 131 145 26.542195 97.655254 62.0987245 1.79308268 0.078847 154 75 SH17084 17084 YHL001W_8_104270_105084_INTRON_130_527 intron 33.368779 144.464372 33.368779 112.095593 72.732186 1.861726641 0.078836 38 89 SH19550 19550 CBP1 2.2 38.615116 119.213789 78.9144525 1.897156548 0.078794 213 52 SH1171 1171 His1 3' flank 23.918719 80.791151 52.354935 1.718957625 0.078774 107 98 SH11373 11373 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3751 3771 34.972317 114.275047 74.623682 1.872876674 0.078765 76 5 SH21825 21825 copy of SH16120 28.538751 104.512501 66.525626 1.82298897 0.07875 186 44 SH5968 5968 snR36 snR36 296 313 26.010725 95.197923 60.604324 1.782503611 0.078745 137 35 SH17027 17027 YGR148C_7_788173_787307_INTRON_1_392 3' exon 24.14011 105.453761 24.14011 82.313651 53.2268805 1.726131014 0.078705 127 46 SH16161 16161 YDR129C_4_715372_713333_INTRON_22_132 intron 26.47538 122.831851 26.47538 97.356471 61.9159255 1.791802369 0.078692 124 58 SH18313 18313 YML073C_13_124172_123227_INTRON_16_430 intron/exon 30.890422 138.627795 30.890422 108.737373 69.8138975 1.843941884 0.078688 63 13 SH9216 9216 snR6 / U6 RNA 5' 26.548885 97.699358 62.1241215 1.79326026 0.078677 96 91 SH10027 10027 RUF6 5' 31.454194 109.520661 70.4874275 1.848111661 0.07862 4 31 SH21096 21096 YNL044W spliced 25.886957 94.536122 60.2115395 1.779679731 0.078561 81 66 SH17855 17855 YKR095W-A_11_625432_625839_INTRON_39_113 intron 26.955088 125.557051 26.955088 99.601963 63.2785255 1.801256351 0.078556 79 37 SH5949 5949 snR36 snR36 201 223 23.761434 79.74221 51.751822 1.713925644 0.078535 194 97 SH17196 17196 YHR021C_8_148660_147862_INTRON_4_553 intron 23.282112 98.913001 23.282112 76.630889 49.9565005 1.698592008 0.078461 130 18 SH8517 8517 snR19 / U1 RNA U1 81 102 23.630085 78.861324 51.2457045 1.709657468 0.078457 55 41 SH3204 3204 Ser5 3' flank 37.758908 118.034337 77.8966225 1.891518628 0.078422 176 14 SH3961 3961 RNase MRP RNaseMRP 221 237 24.755309 86.618636 55.6869725 1.745753608 0.078413 213 8 SH18653 18653 YNL112W_14_413636_416278_INTRON_1274_2275 intron 23.59956 101.261032 23.59956 78.661472 51.130516 1.708680176 0.078389 43 90 SH15575 15575 YBR084C-A_2_415219_414144_INTRON_3_508 intron 25.212257 113.998263 25.212257 89.786006 57.4991315 1.759661285 0.078352 141 43 SH16466 16466 YER093C-A_5_348396_347908_INTRON_125_199 intron/exon 28.257621 131.247883 28.257621 103.990262 66.1239415 1.820358733 0.078273 119 64 SH839 839 Glu2 5' flank 26.705423 98.459588 62.5825055 1.796452946 0.078268 35 68 SH6537 6537 snR46 snR46 176 194 25.581807 92.393286 58.9875465 1.770760333 0.078253 85 8 SH7828 7828 snoRNA cluster1 intergenic 25.807463 118.808476 25.807463 94.001013 59.904238 1.777457548 0.078217 89 24 SH20107 20107 YDL064W spliced 31.494239 109.597657 70.545948 1.848472074 0.078206 106 61 SH11335 11335 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3561 3578 185.396859 318.496125 251.946492 2.401308316 0.078181 204 63 SH11337 11337 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3571 3584 26.239548 96.3017 61.270624 1.787252303 0.078162 214 74 SH20028 20028 YBR181C spliced 33.974194 112.95448 73.464337 1.866076564 0.078131 119 38 SH19199 19199 YPL081W_16_404945_406039_INTRON_8_508 intron 25.866459 119.298923 25.866459 94.432464 60.1494615 1.779231744 0.078116 167 8 SH21657 21657 copy of SH8992 26.683827 98.372174 62.5280005 1.796074541 0.078097 107 3 SH8065 8065 snoRNA cluster 2 snR61 24.567409 108.907424 24.567409 85.340015 54.953712 1.739997033 0.078048 16 52 SH2732 2732 Pro5 tRNA-intron 41 56 26.917138 99.464734 63.190936 1.800654788 0.078043 37 21 SH16645 16645 YFR031C-A_6_221405_220494_INTRON_5_151 5' exon 28.873715 133.077889 28.873715 105.204174 67.0389445 1.826327168 0.078009 28 12 SH18863 18863 YNR053C_14_723108_721117_INTRON_811_1341 intron 26.480738 122.915696 26.480738 97.434958 61.957848 1.792096325 0.077991 104 21 SH3975 3975 RNase MRP RNaseMRP 291 305 28.995473 105.440877 67.218175 1.827486717 0.077989 18 27 SH15724 15724 YBR255C-A_2_727032_726576_INTRON_64_157 intron 24.269092 106.537251 24.269092 83.268159 53.7686255 1.730528935 0.077967 115 10 SH7857 7857 snoRNA cluster1 intergenic 25.104989 113.179146 25.104989 89.074157 57.089573 1.756556795 0.077965 165 46 SH16317 16317 YDR471W_4_1401759_1402553_INTRON_32_415 intron 57.136701 200.572887 57.136701 144.436186 100.7864435 2.00340212 0.077963 208 86 SH7919 7919 snoRNA cluster1 snR72 24.546869 108.75358 24.546869 85.206711 54.87679 1.7393887 0.077928 33 54 SH1111 1111 Gly4 tRNA 31 43 39.242202 120.139371 79.6907865 1.901408113 0.077887 57 23 SH3970 3970 RNase MRP RNaseMRP 266 283 24.209341 82.864887 53.537114 1.728654956 0.077851 23 3 SH13634 13634 MT ATP6 ATP6 25.478555 116.182628 25.478555 91.704073 58.591314 1.767833238 0.077824 31 30 SH2259 2259 Phe1 3' flank 56.310224 143.331365 99.8207945 1.999221022 0.077816 182 84 SH15118 15118 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 3' 23.09828 97.628263 23.09828 75.529983 49.3141315 1.692971389 0.077787 82 68 SH4904 4904 snR9 5' 24.68801 86.211994 55.450002 1.743901566 0.077779 72 83 SH4925 4925 snR9 snR9 31 47 26.348554 96.839345 61.5939495 1.789538053 0.077744 85 99 SH8145 8145 snoRNA cluster 3; intergenic 23.44194 100.13807 23.44194 77.69613 50.569035 1.703884666 0.077737 55 19 SH516 516 Asp2 3' flank 31.041458 108.999835 70.0206465 1.845226116 0.077687 193 51 SH20788 20788 YKL081W spliced 23.974122 81.269129 52.6216255 1.721164259 0.077599 201 100 SH13327 13327 MT COX1 COX1-ai5a 27.279686 127.476238 27.279686 101.196552 64.238119 1.807792816 0.077595 141 87 SH16426 16426 YER074W_5_306319_307192_INTRON_4_469 intron 25.725749 118.206455 25.725749 93.480706 59.6032275 1.775269777 0.077568 64 98 SH16547 16547 YER133W_5_432491_433954_INTRON_178_702 intron 22.944699 96.535502 22.944699 74.590803 48.767751 1.688132728 0.077552 25 21 SH252 252 Arg3 3' flank 25.74436 93.615148 59.679754 1.775827024 0.077549 214 17 SH18864 18864 YNR053C_14_723108_721117_INTRON_811_1341 intron 103.857384 311.418302 103.857384 208.560918 156.209151 2.193706472 0.0775 92 12 SH16368 16368 YEL012W_5_131772_132551_INTRON_6_128 3' exon 23.921989 103.84829 23.921989 80.926301 52.424145 1.719531356 0.07744 187 39 SH3695 3695 Val3 5' flank 24.089913 82.081868 53.0858905 1.724979107 0.077384 119 68 SH1169 1169 His1 66-72 + 3' flank 66 22.577159 72.339143 47.458151 1.676310814 0.077344 73 53 SH1927 1927 Lys1 3' flank 27.453577 102.032857 64.743217 1.811194275 0.077341 92 32 SH5914 5914 snR36 snR36 26 43 105.31182 210.603263 157.9575415 2.198540366 0.077302 24 11 SH9038 9038 snR17a / U3a U3a 476 490 134.598039 250.417053 192.507546 2.284447758 0.077299 111 62 SH7794 7794 snoRNA cluster1 snR75 26.465055 122.880407 26.465055 97.415352 61.9402035 1.791972628 0.077293 194 68 SH18997 18997 YOR122C_15_552886_552297_INTRON_14_222 intron 26.628442 123.80525 26.628442 98.176808 62.402625 1.795202859 0.077284 124 59 SH21384 21384 Lys3_4 spliced 1293.207696 1704.178155 1498.692926 3.175712657 0.077281 171 34 SH13527 13527 MT COX1 intronic 25.003274 112.434128 25.003274 88.430854 56.717064 1.753713741 0.077273 52 67 SH7491 7491 snR71 snR71 71 90 24.334522 83.783097 54.0588095 1.732866477 0.077269 35 20 SH8232 8232 snoRNA cluster 3; 3' 27.330341 127.790798 27.330341 101.460457 64.395399 1.808854838 0.077264 6 98 SH1267 1267 Ile2 tRNA exon/intron 31 47 30.122221 107.642351 68.882286 1.838107552 0.07724 62 57 SH6485 6485 snR46 5' 24.408711 84.303657 54.356184 1.73524896 0.077222 206 59 SH5603 5603 snR34 5' 26.447182 97.339081 61.8931315 1.791642456 0.077203 203 65 SH17943 17943 YLR128W_12_398531_399434_INTRON_4_97 5' exon 25.92936 119.866308 25.92936 94.936948 60.433154 1.781275261 0.077197 9 41 SH1205 1205 Ile1 5' flank - tRNA3 3 27.814786 103.179854 65.49732 1.81622353 0.077193 20 47 SH6195 6195 snR40 snR40 36 51 36.056235 115.813779 75.935007 1.880442037 0.077138 54 50 SH3526 3526 Tyr2 5' flank 23.95857 81.202923 52.5807465 1.720826748 0.077126 138 95 SH4623 4623 snR3 snR3 31 48 38.610581 119.308899 78.95974 1.89740571 0.077104 39 58 SH33 33 Ala1 tRNA 61 73 31.604018 109.807864 70.705941 1.849455907 0.077086 45 21 SH3769 3769 Val4 71-73 + 3' flank 71 22.888904 74.279875 48.5843895 1.68649675 0.077081 150 84 SH14470 14470 MT 21S rRNA 21S rRNA3 27.692444 129.637521 27.692444 102.945077 65.3187605 1.815037935 0.07707 136 46 SH1291 1291 Ile2 3' flank 23.934657 81.044343 52.4895 1.720072436 0.077068 67 104 SH9336 9336 RUF1 RUF1 256 273 24.498037 84.941548 54.7197925 1.738144442 0.077065 138 67 SH17646 17646 YJR145C_10_702761_701720_INTRON_15_270 intron 23.688468 102.059362 23.688468 79.370894 51.529681 1.712057454 0.077062 53 13 SH3542 3542 Tyr2 5' flank 29.143407 105.781599 67.462503 1.82906245 0.077008 184 12 SH15852 15852 YDL075W_4_322225_322987_INTRON_58_478 3' exon 28.076227 130.781061 28.076227 103.704834 65.8905305 1.818823004 0.077001 159 50 SH7842 7842 snoRNA cluster1 snR74 36.677185 152.316905 36.677185 116.63972 76.6584525 1.884560048 0.076997 122 62 SH4439 4439 telomerase RNA telomerase 1231 1250 25.1055 89.168688 57.137094 1.756918148 0.07697 40 67 SH16667 16667 YFR032C-A_6_223758_223245_INTRON_1_331 intron 24.454306 108.098616 24.454306 84.64431 54.549308 1.736789246 0.076968 158 101 SH7282 7282 snR66 5' 26.515062 97.673284 62.094173 1.793050847 0.076964 123 59 SH16077 16077 YDR025W_4_491510_492319_INTRON_46_384 intron 26.204535 121.442405 26.204535 96.23787 61.2212025 1.786901856 0.076856 86 70 SH10660 10660 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 186 203 28.614687 104.766291 66.690489 1.824063902 0.076842 127 2 SH18972 18972 YOR096W_15_505793_506766_INTRON_145_545 intron 26.976113 125.81166 26.976113 99.835547 63.40583 1.802129192 0.076826 192 33 SH14395 14395 MT 21S rRNA 21S rRNA3 26.57394 123.532986 26.57394 97.959046 62.266493 1.794254406 0.076813 149 17 SH21343 21343 YPR098C spliced 157.747788 281.583989 219.6658885 2.341762621 0.076806 89 23 SH16729 16729 YGL076C_7_365994_364333_INTRON_565_1032 5' exon 28.29896 131.451801 28.29896 104.152841 66.2259005 1.821027872 0.076794 45 3 SH21241 21241 YOR312C spliced 55.894786 142.847319 99.3710525 1.99725989 0.076763 129 101 SH9566 9566 RUF3 RUF3 216 232 23.647259 79.117275 51.382267 1.710813262 0.076762 204 3 SH5940 5940 snR36 snR36 156 174 26.16378 96.056081 61.1099305 1.78611179 0.076759 183 53 SH21682 21682 copy of SH10032 24.922093 87.919455 56.420774 1.75143904 0.076713 90 24 SH1688 1688 Leu6 tRNA 6 18 944.68944 1287.230585 1115.960013 3.047648633 0.076709 118 89 SH1133 1133 Gly4 3' flank 49.867593 134.688817 92.278205 1.965099138 0.076702 149 97 SH13886 13886 MT COB intronic 24.826169 111.08475 24.826169 87.258581 56.042375 1.748516532 0.076699 57 43 SH8848 8848 LSR1 / U2 RNA U2 881 895 46.248811 129.796149 88.02248 1.9445936 0.076697 183 20 SH7247 7247 snR65 snR65 11 33 26.417746 97.240815 61.8292805 1.791194193 0.076696 67 28 SH19448 19448 CYC1 24.104747 82.244474 53.1746105 1.725704317 0.07668 48 36 SH5753 5753 snR35 5' 24.814371 87.183005 55.998688 1.748177852 0.076635 110 58 SH8613 8613 snR19 / U1 RNA U1 561 577 25.05267 88.832118 56.942394 1.755435722 0.076631 88 68 SH2696 2696 Pro4 3' flank 27.192521 100.864428 64.0284745 1.806373155 0.07663 206 45 SH9895 9895 RUF5-1 RUF5-1 281 297 26.743936 98.770446 62.757191 1.797663496 0.076572 213 24 SH10811 10811 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 941 960 127.637092 241.141835 184.3894635 2.265736101 0.076559 188 52 SH4017 4017 SRP RNA 5' 23.444089 77.803215 50.623652 1.704353472 0.076545 207 100 SH14635 14635 MT 21S rRNA Sce1 endonuc 23.970723 104.306824 23.970723 81.336101 52.653412 1.721426519 0.076538 150 68 SH309 309 Arg4 3' flank 26.830572 99.17782 63.004196 1.799369474 0.076536 27 66 SH15221 15221 MT COX3 cox3 22.785806 95.475111 22.785806 73.689305 48.2375555 1.683385291 0.076441 34 39 SH15199 15199 MT COX3 cox3 26.681525 124.174219 26.681525 98.492694 62.5871095 1.796484895 0.076397 168 99 SH10067 10067 RUF6 RUF6 181 196 878.947991 1207.561918 1043.254955 3.018390456 0.076353 132 29 SH21376 21376 Leu8_9 spliced 25.736158 93.673213 59.7046855 1.776008415 0.076336 201 28 SH14672 14672 MT 21S rRNA 21S rRNA4 26.274391 121.878268 26.274391 96.603877 61.439134 1.788445086 0.076307 26 88 SH6272 6272 snR42 snR42 141 157 25.266129 90.3562 57.8111645 1.762011718 0.07626 66 102 SH2980 2980 Ser1 3' flank 22.787991 73.720505 48.254248 1.683535552 0.076203 157 73 SH21275 21275 YPL090C spliced 26.752575 98.8396 62.7960875 1.797932586 0.0762 180 79 SH13031 13031 MT COX1 COX1ai2 29.691987 135.57325 29.691987 106.881263 68.286625 1.834335649 0.0762 172 4 SH7256 7256 snR65 snR65 56 75 25.206365 89.94542 57.5758925 1.760240679 0.076177 172 49 SH7935 7935 snoRNA cluster1 snR72/3' 24.660629 109.824629 24.660629 86.164 55.4123145 1.74360629 0.07617 205 66 SH8658 8658 LSR1 / U2 RNA 5' 25.703088 93.455429 59.5792585 1.775095094 0.076148 51 59 SH13246 13246 MT COX1 COX1-ai4 25.805931 118.995854 25.805931 94.189923 59.997927 1.778136245 0.076147 123 28 SH21590 21590 copy of SH6251 51.382039 136.809459 94.095749 1.973570004 0.076105 178 27 SH8820 8820 LSR1 / U2 RNA U2 741 756 27.176745 100.833207 64.004976 1.806213739 0.076089 43 30 SH1549 1549 Leu4 5' flank 25.541161 92.311008 58.9260845 1.770307584 0.076083 144 46 SH10669 10669 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 231 248 32.479057 111.054239 71.766648 1.855922662 0.076058 208 28 SH15248 15248 MT tRNA fMet tRNA 26.321881 122.167133 26.321881 96.845252 61.5835665 1.789464837 0.076035 11 16 SH13321 13321 MT COX1 COX1-ai5a 29.799166 135.896659 29.799166 107.097493 68.4483295 1.835362854 0.076001 124 9 SH16193 16193 YDR381C-A_4_1238839_1238301_INTRON_27_220 exon/intron 32.61337 142.852336 32.61337 111.238966 71.926168 1.856886923 0.075992 40 73 SH3163 3163 Ser5 5' flank 24.037402 81.841855 52.9396285 1.723780889 0.075973 196 6 SH1135 1135 Gly4 3' flank 109.345697 216.328443 162.83707 2.211753279 0.075943 120 17 SH12945 12945 MT COX1 COX1ai2 28.387975 131.763262 28.387975 104.375287 66.381631 1.822047919 0.075919 119 54 SH3132 3132 Ser4 tRNA 66 80 25.539645 92.317012 58.9283285 1.770324123 0.075906 122 41 SH5431 5431 snR31 221-225+3' 221 23.991407 81.532436 52.7619215 1.722320603 0.075898 125 18 SH16057 16057 YDL219W_4_65243_65766_INTRON_66_136 5' exon 26.796303 124.866733 26.796303 99.07043 62.9333665 1.798880964 0.075858 9 62 SH8526 8526 snR19 / U1 RNA U1 126 142 32.361136 110.907611 71.6343735 1.855121467 0.075818 180 33 SH433 433 Asp1 5' flank - tRNA6 5' flank 6 23.604943 78.910918 51.2579305 1.709761068 0.075802 78 11 SH10266 10266 RUF7 5' 41.445764 123.293901 82.3698325 1.915768183 0.075784 175 100 SH17907 17907 YLR061W_12_263195_263949_INTRON_13_401 intron 24.092015 105.326143 24.092015 82.234128 53.1630715 1.725610064 0.075781 76 29 SH1469 1469 Leu2 3' flank 23.754465 79.927174 51.8408195 1.714671858 0.075754 16 25 SH20664 20664 YIL052C spliced 37.02997 117.173274 77.101622 1.887063514 0.075733 52 53 SH10425 10425 RUF8 RUF8 51 71 24.129664 82.498384 53.314024 1.726841463 0.075727 89 98 SH19991 19991 YBL092W spliced 31.193483 109.314519 70.254001 1.846671063 0.075716 167 103 SH6057 6057 snR37 snR37 201 217 26.302555 96.782913 61.542734 1.789176786 0.075673 165 33 SH75 75 Ala2 11-23 11 23 41.19289 122.948594 82.070742 1.91418836 0.075662 19 5 SH6966 6966 snR60 5' 50.470549 135.593749 93.032149 1.968633053 0.07566 48 48 SH8036 8036 snoRNA cluster 2 snR55/intergenic 26.828418 125.064853 26.828418 99.236435 63.0324265 1.799564026 0.075654 166 62 SH12857 12857 MT COX1 COX1ai1 26.374294 122.494509 26.374294 97.120215 61.7472545 1.790617652 0.075626 65 104 SH16250 16250 YDR397C_4_1266887_1266355_INTRON_38_129 exon/intron 26.082327 120.846202 26.082327 95.763875 60.923101 1.784782001 0.075619 140 78 SH19859 19859 Negative Control 26.643039 98.375041 62.50904 1.795942829 0.075596 46 14 SH8522 8522 snR19 / U1 RNA U1 106 123 32.469974 111.066819 71.7683965 1.855933243 0.075595 200 19 SH7258 7258 snR65 snR65 66 83 25.6714 93.284743 59.4780715 1.774356879 0.075573 101 13 SH15091 15091 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.411026 122.707766 26.411026 97.29674 61.853883 1.791366969 0.075554 160 69 SH16459 16459 YER074W-A_0_5_307649_INTRON_95_196 3' exon 24.398622 107.782152 24.398622 84.38353 54.391076 1.73552765 0.075519 93 81 SH12511 12511 MT_ORF6 + ORF7 (hypothetical) 5' 22.678569 94.774757 22.678569 73.096188 47.8873785 1.680221063 0.075515 24 7 SH16726 16726 YGL033W_7_435621_436347_INTRON_56_125 intron 25.430162 116.011796 25.430162 91.581634 58.505898 1.76719965 0.075494 179 55 SH20380 20380 YFL034C-A spliced 29.851408 107.226478 68.538943 1.835937403 0.075488 72 97 SH4837 4837 snR8 5' 23.255008 76.690702 49.972855 1.698734162 0.075481 37 2 SH10692 10692 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 346 363 79.446073 175.045146 127.2456095 2.104642806 0.075445 55 49 SH12909 12909 MT COX1 COX1ai2 23.84401 103.4082 23.84401 80.56419 52.2041 1.717704613 0.075426 108 49 SH14928 14928 MT tRNA Asn 5' 23.776748 102.883183 23.776748 80.106435 51.9415915 1.715515252 0.075422 198 48 SH14600 14600 MT 21S rRNA Sce1 endonuc 26.54128 123.457641 26.54128 97.916361 62.2288205 1.793991569 0.075388 119 62 SH6052 6052 snR37 snR37 176 194 41.438556 123.309148 82.373852 1.915789375 0.075381 114 22 SH7920 7920 snoRNA cluster1 snR72 24.638348 109.71702 24.638348 86.078672 55.35851 1.743184392 0.075373 32 77 SH1329 1329 Ile3 tRNA-exon/intron 26 42 25.687705 93.420646 59.5541755 1.774912216 0.075367 6 9 SH4680 4680 snR4 5' 24.687821 86.427812 55.5578165 1.744745169 0.075346 167 88 SH563 563 Cys1 3' flank 30.067466 107.649152 68.858309 1.837956353 0.075299 167 65 SH17415 17415 YIL106W_9_166412_167441_INTRON_21_105 3' exon 28.22944 131.331596 28.22944 104.102156 66.165798 1.820633555 0.075247 111 21 SH14443 14443 MT 21S rRNA 21S rRNA3 26.818893 125.048195 26.818893 99.229302 63.0240975 1.799506635 0.075173 140 64 SH942 942 Gly1 5' flank 24.275964 83.56043 53.918197 1.731735361 0.075164 96 93 SH13883 13883 MT COB intronic 24.816952 111.151487 24.816952 87.334535 56.0757435 1.748775041 0.075141 76 22 SH20681 20681 YIL111W spliced 25.665169 93.282258 59.4737135 1.774325056 0.075135 103 20 SH5011 5011 snR10 snR10 86 100 62.568502 151.991265 107.2798835 2.030518293 0.075133 172 38 SH1758 1758 Leu7 3' flank 22.906319 74.544848 48.7255835 1.687757049 0.074992 60 40 SH17565 17565 YJL189W_10_75932_76473_INTRON_7_392 intron 76.279813 246.030425 76.279813 170.750612 123.5152125 2.09172045 0.07495 204 37 SH6515 6515 snR46 snR46 66 84 26.738997 98.874044 62.8065205 1.798004734 0.074938 165 42 SH15243 15243 MT tRNA fMet 5' / tRNA 34.679028 147.772653 34.679028 114.093625 74.3863265 1.871493112 0.074919 3 79 SH17041 17041 YGR183C_7_859471_859058_INTRON_4_216 intron 23.52285 100.955366 23.52285 78.432516 50.977683 1.707380092 0.074914 31 73 SH14851 14851 MT tRNA Ser2; tRNA Arg2 5' 23.412581 100.146858 23.412581 77.734277 50.573429 1.703922401 0.074876 121 43 SH6729 6729 snR49 3' 23.705732 79.67289 51.689311 1.713400743 0.074838 19 35 SH5740 5740 snR34 3' 76.301477 170.792123 123.5468 2.091831501 0.074826 103 12 SH2700 2700 Pro4 3' flank 26.498342 97.760818 62.12958 1.793298418 0.074806 15 52 SH4724 4724 snR4 snR4 156 172 24.923842 88.104471 56.5141565 1.75215725 0.074798 168 30 SH14846 14846 MT tRNA Asp 3' 22.754772 95.377445 22.754772 73.622673 48.1887225 1.682945413 0.074756 78 72 SH4985 4985 snR10 5' 23.943728 81.302803 52.6232655 1.721177794 0.074755 190 57 SH7528 7528 snR79 5' 23.263644 76.80478 50.034212 1.699267064 0.074711 125 56 SH18069 18069 YLR344W_12_819312_820142_INTRON_20_466 intron 23.738078 102.642592 23.738078 79.904514 51.821296 1.71450827 0.074694 176 21 SH6320 6320 snR42 3' 24.463268 84.909706 54.686487 1.737880026 0.074683 130 28 SH6885 6885 snR56 snR56 56 73 25.442174 91.743248 58.592711 1.767843593 0.074677 109 37 SH10033 10033 RUF6 RUF6 11 27 23.26023 76.786425 50.0233275 1.699172577 0.07467 206 43 SH13862 13862 MT COB Cytbi2 23.447994 100.427375 23.447994 77.979381 50.7136875 1.70512519 0.074619 186 83 SH13148 13148 MT COX1 intronic 30.564274 138.062408 30.564274 108.498134 69.531204 1.84217975 0.074571 90 103 SH18715 18715 YNL130C_14_381156_379555_INTRON_30_470 intron 23.712746 102.45566 23.712746 79.742914 51.72783 1.71372426 0.074569 60 70 SH20602 20602 YHR041C spliced 28.077765 103.843087 65.960426 1.819283452 0.074546 114 9 SH2744 2744 Pro5 101-103 + 3' flank 101 25.288074 90.670581 57.9793275 1.763273174 0.074533 154 90 SH9914 9914 RUF5-1 RUF5-1 376 398 23.524538 78.477966 51.001252 1.707580837 0.074477 185 94 SH3450 3450 Trp1 tRNA 81 97 28.656184 104.978962 66.817573 1.824890697 0.074472 117 35 SH4688 4688 snR4 5' 24.227626 83.286666 53.757146 1.730436204 0.074455 122 84 SH19087 19087 YOR293W_15_867094_867848_INTRON_53_489 3' exon 256.021709 668.849648 256.021709 413.827939 334.924824 2.524947338 0.07444 173 96 SH10362 10362 RUF7 RUF7 421 437 27.590441 102.887318 65.2388795 1.814506493 0.074431 76 24 SH5743 5743 snR35 5' 31.669085 110.038453 70.853769 1.850362957 0.074428 101 70 SH3043 3043 Ser3 5' flank 31.980952 110.465889 71.2234205 1.852622827 0.074416 20 96 SH4468 4468 telomerase RNA 3' 24.026737 81.902674 52.9647055 1.723986562 0.074407 29 82 SH16320 16320 YDR471W_4_1401759_1402553_INTRON_32_415 intron 25.701161 118.311083 25.701161 93.609922 59.6555415 1.775650792 0.074395 50 14 SH7662 7662 snoRNA cluster1 snR78 39.137943 158.346084 39.137943 120.208141 79.673042 1.901311399 0.074361 29 62 SH11190 11190 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2836 2852 47.665738 131.896313 89.7810255 1.953184562 0.074276 123 73 SH19032 19032 YOR234C_15_779404_778554_INTRON_20_546 5' exon 29.310146 134.569639 29.310146 106.259493 67.7848195 1.831132444 0.074229 154 94 SH16882 16882 YGL189C_7_148970_148233_INTRON_1_368 intron 24.3904 107.835015 24.3904 84.444615 54.4175075 1.735738646 0.074177 12 95 SH953 953 Gly1 tRNA 16 33 23.818308 80.499312 52.15881 1.717327674 0.074115 153 39 SH7963 7963 snoRNA cluster 2 5' 27.287045 127.795877 27.287045 101.508832 64.3979385 1.808871965 0.074103 59 74 SH5799 5799 snR35 snR35 181 203 26.747789 98.983557 62.865673 1.798413569 0.074057 117 88 SH10199 10199 RUF6 RUF6 841 858 24.916132 88.121578 56.518855 1.752193355 0.074017 121 91 SH3444 3444 Trp1 tRNA 51 68 50.226851 135.374985 92.800918 1.967552272 0.074014 56 91 SH4709 4709 snR4 snR4 81 100 25.251242 90.460612 57.855927 1.762347856 0.074008 61 76 SH6107 6107 snR37 3' 38.006354 118.648062 78.327208 1.893912646 0.07398 196 103 SH12514 12514 MT_ORF6 + ORF7 (hypothetical) ORF6/7 23.112889 98.025728 23.112889 75.912839 49.512864 1.694718048 0.073974 158 104 SH5815 5815 snR35 snR35 261 278 26.406431 97.397823 61.902127 1.791705572 0.07395 118 41 SH6011 6011 snR37 5' 23.736152 79.954084 51.845118 1.714707867 0.073945 74 90 SH21396 21396 Pro2_7 spliced 3849.428058 4477.448597 4163.438328 3.619452136 0.073926 152 100 SH10730 10730 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 536 551 27.240269 101.303302 64.2717855 1.808020365 0.073922 129 14 SH538 538 Cys1 5' flank - tRNA8 5' flank 8 25.566099 92.693389 59.129744 1.771805999 0.073918 198 4 SH10176 10176 RUF6 RUF6 726 745 24.167129 82.91456 53.5408445 1.728685217 0.073911 109 52 SH5093 5093 snR11 snR11 66 82 39.299955 120.460574 79.8802645 1.902439494 0.073901 46 4 SH10202 10202 RUF6 RUF6 856 880 25.508857 92.288984 58.8989205 1.770107335 0.073897 20 100 SH8465 8465 snoRNA cluster 5 3' 24.274384 106.935648 24.274384 83.661264 53.967824 1.732134908 0.073886 207 54 SH5413 5413 snR31 snR31 131 147 24.053677 82.133051 53.093364 1.725040243 0.073884 86 47 SH12432 12432 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.546555 117.106215 25.546555 92.55966 59.0531075 1.771242756 0.073864 58 88 SH13359 13359 MT COX1 intronic 32.879733 143.59238 32.879733 111.712647 72.29619 1.859115411 0.07385 146 96 SH13083 13083 MT COX1 COX1ai3 24.104486 105.594258 24.104486 82.489772 53.297129 1.726703815 0.073813 209 71 SH9243 9243 snR6 / U6 RNA U6 86 107 26.690989 98.737281 62.714135 1.797365437 0.073808 107 64 SH11881 11881 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6291 6309 99.02589 202.314172 150.670031 2.178026878 0.073807 210 4 SH8269 8269 snoRNA cluster4 snR67 28.087048 130.990685 28.087048 103.903637 65.9953425 1.819513287 0.073779 72 52 SH17200 17200 YHR021C_8_148660_147862_INTRON_4_553 intron/exon 23.496745 100.852813 23.496745 78.356068 50.9264065 1.706943032 0.073777 143 40 SH7382 7382 snR68 131-136 + 3' 131 24.62734 86.146324 55.386832 1.743406525 0.07376 47 96 SH17676 17676 YKL006W_11_431544_432358_INTRON_130_527 5' exon 23.934602 104.259983 23.934602 81.325381 52.6299915 1.7212333 0.073755 168 5 SH476 476 Asp2 5' flank 24.727536 86.845843 55.7866895 1.74653059 0.073714 92 53 SH6501 6501 snR46 5' - 12 -4 12 26.004849 95.549017 60.776933 1.78373878 0.073689 34 77 SH8561 8561 snR19 / U1 RNA U1 301 318 23.509508 78.446832 50.97817 1.707384241 0.073658 32 5 SH5631 5631 snR34 snR34 76 93 24.597718 85.948788 55.273253 1.742515025 0.073632 128 86 SH2662 2662 Pro4 5' flank 24.4823 85.138015 54.8101575 1.73886105 0.073617 112 47 SH10016 10016 RUF6 5' 291.429786 461.729016 376.579401 2.57585656 0.073581 125 89 SH20422 20422 YGL031C spliced 48.890253 133.596028 91.2431405 1.960200225 0.073571 209 100 SH16939 16939 YGR027C_7_534779_534126_INTRON_1_312 intron 26.072182 120.944751 26.072182 95.872569 60.9723755 1.785133116 0.073547 36 4 SH6505 6505 snR46 snR46 16 32 24.620282 86.116748 55.368515 1.743262876 0.073535 47 68 SH15356 15356 YBL026W_2_170585_171000_INTRON_55_182 intron 28.021447 130.811653 28.021447 103.790206 65.9058265 1.818923811 0.073495 47 60 SH12522 12522 MT_ORF6 + ORF7 (hypothetical) ORF6/7 22.724257 95.252021 22.724257 73.527764 48.1260105 1.682379861 0.073492 175 7 SH4430 4430 telomerase RNA telomerase 1186 1205 23.177492 76.356258 49.766875 1.696940371 0.073488 136 58 SH4203 4203 telomerase RNA telomerase 51 67 24.232778 83.407476 53.820127 1.730944718 0.07348 29 12 SH6215 6215 snR40 3' 26.341278 97.130542 61.73591 1.790537854 0.073473 92 2 SH15180 15180 MT COX3 cox3 48.63782 180.904311 48.63782 133.266491 90.9521555 1.958812996 0.073437 6 85 SH6525 6525 snR46 snR46 116 133 28.433247 104.601684 66.5174655 1.822935693 0.073433 118 21 SH11808 11808 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5926 5945 196.809471 334.763881 265.786676 2.424533206 0.073413 34 104 SH10346 10346 RUF7 RUF7 341 357 24.306789 83.932342 54.1195655 1.733354301 0.073368 82 58 SH19259 19259 YPL143W_16_282121_282969_INTRON_20_544 intron 218.335329 580.950085 218.335329 363.614756 290.9750425 2.46385574 0.073353 152 59 SH4053 4053 SRP RNA SRP RNA 156 173 27.128197 100.82377 63.9759835 1.806016971 0.073328 57 56 SH15155 15155 MT tRNA Val 5' 24.625386 109.80392 24.625386 86.178534 55.40196 1.743525129 0.07325 184 64 SH13972 13972 MT COB Cytbi3 25.953262 120.296586 25.953262 95.343324 60.648293 1.782818582 0.073237 153 65 SH8190 8190 snoRNA cluster 3; snR70/intergenic 22.715355 95.209776 22.715355 73.494421 48.104888 1.682189208 0.0732 167 39 SH21412 21412 Ser3 spliced 26.6605 98.642325 62.6514125 1.796930867 0.073193 27 78 SH7760 7760 snoRNA cluster1 snR76 29.54754 135.323632 29.54754 106.776092 68.161816 1.833541153 0.073171 74 17 SH1373 1373 Leu1 5' flank 27.320647 101.741866 64.5312565 1.809770121 0.073163 171 74 SH6742 6742 snR49 3' 24.09797 82.503058 53.300514 1.726731397 0.073137 131 43 SH21866 21866 copy of SH19501 29.17485 106.061428 67.618139 1.830063214 0.073111 49 87 SH8196 8196 snoRNA cluster 3; intergenic 24.660468 110.099946 24.660468 86.439478 55.549973 1.744683852 0.073097 3 43 SH19239 19239 YPL090C_16_378390_377286_INTRON_7_400 intron 24.205539 106.459373 24.205539 83.253834 53.7296865 1.730214307 0.073072 213 81 SH4902 4902 snR9 5' 26.058302 95.850096 60.954199 1.785003629 0.072987 90 10 SH19966 19966 YBL059W spliced 23.891675 81.097101 52.494388 1.720112877 0.072978 176 47 SH12682 12682 MT tRNA Trp tRNA 24.874351 111.800867 24.874351 87.926516 56.4004335 1.751282442 0.072971 43 34 SH17412 17412 YIL106W_9_166412_167441_INTRON_21_105 intron 23.201932 98.75317 23.201932 76.551238 49.876585 1.69789671 0.072957 148 26 SH18261 18261 YML056C_13_164176_162194_INTRON_461_868 intron 25.24319 114.746061 25.24319 90.502871 57.8730305 1.762476225 0.072944 37 22 SH5410 5410 snR31 snR31 116 134 26.961564 100.074273 63.5179185 1.802896258 0.072913 182 68 SH15302 15302 YAL001C_1_151163_147591_INTRON_71_160 5'exon 23.904398 104.09464 23.904398 81.190242 52.54732 1.720550571 0.072908 29 49 SH14545 14545 MT 21S rRNA 21S rRNA3 26.787733 125.049341 26.787733 99.261608 63.0246705 1.799510584 0.072886 120 76 SH17754 17754 YKL157W_11_154993_158183_INTRON_282_664 intron 25.813186 119.37426 25.813186 94.561074 60.18713 1.779503635 0.072851 62 61 SH8671 8671 LSR1 / U2 RNA 5' - 11 -4 11 29.539541 106.781662 68.1606015 1.833533414 0.072802 172 93 SH18792 18792 YNL301C_14_64561_63569_INTRON_113_544 intron 25.571708 117.411179 25.571708 92.839471 59.2055895 1.77236271 0.072802 143 33 SH16094 16094 YDR025W_4_491510_492319_INTRON_46_384 3' exon 42.561557 166.58901 42.561557 125.027453 83.794505 1.92321554 0.072798 45 56 SH8940 8940 snR17a / U3a 5' - 3 -14 3 25.109453 89.578954 57.3442035 1.758489525 0.072796 196 7 SH21763 21763 copy of SH13395 24.228493 83.437894 53.8331935 1.731050144 0.07279 177 56 SH10886 10886 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1316 1329 422.891875 636.963337 529.927606 2.724216544 0.072757 36 85 SH6960 6960 snR58 3' 27.395324 102.127427 64.7613755 1.811316064 0.072739 17 18 SH15034 15034 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 457.32621 1138.121831 457.32621 681.795621 569.5609155 2.755540179 0.072722 187 85 SH19191 19191 YPL079W_16_406631_407534_INTRON_12_432 3' exon 26.719045 124.673569 26.719045 98.954524 62.8367845 1.798213953 0.072699 44 5 SH17139 17139 YHR010W_8_126513_127484_INTRON_32_592 intron 25.282661 115.086975 25.282661 90.804314 58.0434875 1.763753499 0.072688 137 8 SH4630 4630 snR3 snR3 66 81 25.869902 94.985061 60.4274815 1.781234494 0.072684 116 104 SH18413 18413 YMR125W_13_517538_520445_INTRON_26_347 3' exon 27.207155 127.456716 27.207155 101.249561 64.228358 1.807726819 0.072639 150 86 SH196 196 Arg2 3' flank 23.388594 77.757987 50.5732905 1.703921211 0.072632 50 27 SH7248 7248 snR65 snR65 16 36 26.960935 100.094231 63.527583 1.802962332 0.072621 211 32 SH11199 11199 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2881 2901 25.627322 93.253267 59.4402945 1.774080952 0.072619 23 86 SH474 474 Asp2 5' flank 31.127707 109.39231 70.2600085 1.846708198 0.07252 34 81 SH9918 9918 RUF5-1 RUF5-1 396 413 25.786803 94.407076 60.0969395 1.778852356 0.072486 78 18 SH6722 6722 snR49 snR49 136 155 23.866422 80.966127 52.4162745 1.71946615 0.072482 107 85 SH6436 6436 snR45 snR45 26 44 27.117542 100.841285 63.9794135 1.806040255 0.072474 154 24 SH17475 17475 YJL001W_10_434855_435618_INTRON_66_181 intron 24.709286 110.541425 24.709286 86.832139 55.7707125 1.746406193 0.072457 209 23 SH6587 6587 snR47 snR47 41 62 27.785342 103.381626 65.583484 1.816794484 0.072452 125 80 SH6947 6947 snR58 96 + 3' 96 27.245603 101.447967 64.346785 1.808526853 0.072419 173 87 SH12915 12915 MT COX1 COX1ai2 593.042974 1447.772247 593.042974 855.729273 724.3861235 2.859970122 0.072348 211 4 SH6113 6113 snR39B 5' 23.674222 79.666641 51.6704315 1.713242088 0.072346 172 40 SH20782 20782 YKL006W spliced 33.344012 112.415581 72.8797965 1.862607151 0.072333 192 89 SH9110 9110 snR14 / U4 RNA 3' 24.531587 85.600613 55.0661 1.740884319 0.072318 79 58 SH8694 8694 LSR1 / U2 RNA U2 111 128 32.102128 110.745301 71.4237145 1.853842433 0.072282 107 48 SH14005 14005 MT COB intronic 24.984606 112.741881 24.984606 88.757275 56.8709405 1.75489041 0.072254 191 43 SH1455 1455 Leu2 tRNA-intron 46 60 46.107587 129.899884 88.0037355 1.944501107 0.072247 85 64 SH15011 15011 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 221.09242 587.654228 221.09242 367.561808 294.327114 2.468830272 0.072203 75 82 SH2897 2897 Pro8 tRNA 6 22 261.922482 422.3477 342.135091 2.53419762 0.072177 29 22 SH14080 14080 MT COB Cytbi4 25.567491 117.44246 25.567491 92.874969 59.22123 1.772477423 0.072115 80 55 SH16896 16896 YGL226C-A_7_73156_72747_INTRON_22_170 intron 23.995551 104.880119 23.995551 81.884568 52.9400595 1.723784425 0.072112 196 21 SH15238 15238 MT tRNA fMet 5' 23.713993 102.671563 23.713993 79.95757 51.8357815 1.714629651 0.072101 89 73 SH20320 20320 YER044C-A spliced 21.945564 68.941882 45.443723 1.657473904 0.072063 170 62 SH18049 18049 YLR333C_12_796335_795573_INTRON_1_423 intron 30.275988 137.500935 30.275988 108.224947 69.2504675 1.84042271 0.072042 125 71 SH16225 16225 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.654444 135.699982 29.654444 107.045538 68.349991 1.834738462 0.07204 85 16 SH13491 13491 MT COX1 intronic 23.796262 103.320722 23.796262 80.52446 52.160361 1.717340588 0.07203 15 104 SH1719 1719 Leu6 3' flank 31.807227 110.358264 71.0827455 1.851764194 0.071982 93 99 SH16209 16209 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 25.74154 118.874985 25.74154 94.133445 59.9374925 1.77769857 0.071958 54 43 SH19956 19956 YBL059C-A spliced 24.028643 82.126638 53.0776405 1.724911609 0.071949 45 28 SH6063 6063 snR37 snR37 231 250 25.455754 92.099543 58.7776485 1.769212207 0.071919 24 43 SH10962 10962 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1696 1714 984.465248 1339.640259 1162.052754 3.065225844 0.071879 189 72 SH6580 6580 snR47 snR47 6 26 23.455336 78.244054 50.849695 1.706288352 0.071854 137 101 SH10591 10591 RUF8 RUF8 881 898 24.223669 83.486826 53.8552475 1.731228026 0.071845 44 20 SH2851 2851 Pro7 tRNA-intron/exon 61 75 54.052174 140.71755 97.384862 1.988491453 0.071826 124 14 SH3396 3396 Thr4 66-72 + 3' flank 66 30.760824 108.918391 69.8396075 1.84410179 0.071812 211 82 SH19382 19382 YPR043W_16_654161_654842_INTRON_3_405 intron 24.202612 106.546587 24.202612 83.343975 53.7732935 1.730566637 0.071804 100 35 SH2868 2868 Pro7 3' flank 23.722509 80.040894 51.8817015 1.715014211 0.071798 78 74 SH13685 13685 MT ORF 5 (hypothetical) ORF5 23.96747 104.685959 23.96747 81.718489 52.8429795 1.722987297 0.071793 147 45 SH9912 9912 RUF5-1 RUF5-1 366 385 22.521367 72.402761 47.462064 1.676346621 0.071786 77 56 SH4729 4729 snR4 181-186 + 3' 181 25.778051 94.415856 60.0969535 1.778852457 0.071746 102 87 SH17377 17377 YIL052C_9_257061_256224_INTRON_38_509 intron 25.320201 115.478282 25.320201 91.158081 58.239141 1.765214961 0.071732 6 44 SH10349 10349 RUF7 RUF7 356 375 23.935649 81.505671 52.72066 1.721980838 0.071722 73 73 SH37 37 Ala1 3' flank 23.957679 81.657328 52.8075035 1.722695636 0.07172 155 24 SH12040 12040 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7086 7103 37.175856 117.606166 77.391011 1.88869052 0.071672 99 103 SH9156 9156 snR7 U5 RNA U5 51 65 25.090644 89.553738 57.322191 1.758322782 0.071639 200 68 SH1142 1142 His1 5' flank 25.225921 90.504478 57.8651995 1.762417455 0.071619 33 50 SH15114 15114 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF3 exon3 22.372297 92.874309 22.372297 71.502012 46.9371545 1.671516758 0.071615 181 37 SH18636 18636 YNL096C_14_444312_443395_INTRON_145_489 intron 25.905876 120.151273 25.905876 95.245397 60.5756365 1.782297986 0.071603 62 62 SH21298 21298 YPL198W spliced 25.683353 93.75511 59.7192315 1.77611421 0.07156 36 3 SH2920 2920 Pro8 3' flank 24.635165 86.401129 55.518147 1.744434962 0.07155 42 103 SH11724 11724 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5506 5521 26.589024 98.43703 62.513027 1.795970529 0.071524 43 77 SH3595 3595 Val1 5' flank 24.407148 84.796869 54.6020085 1.737208618 0.071523 183 8 SH15908 15908 YDL083C_4_307788_306925_INTRON_25_456 intron 26.134407 121.450778 26.134407 96.316371 61.225389 1.786931553 0.0715 24 87 SH7261 7261 snR65 snR65 81 100 25.019013 89.066527 57.04277 1.756200607 0.071494 137 40 SH934 934 Gly1 5' flank 23.824764 80.76499 52.294877 1.718459146 0.071489 78 84 SH1306 1306 Ile3 5' flank 24.306759 84.100281 54.20352 1.734027491 0.071455 11 30 SH6176 6176 snR40 5' 25.435678 92.001124 58.718401 1.768774221 0.071453 195 92 SH17260 17260 YHR101C_8_315970_314876_INTRON_111_197 intron 23.885513 104.070469 23.885513 81.184956 52.5352345 1.720450675 0.071445 67 45 SH16003 16003 YDL137W_4_216158_217074_INTRON_1_332 intron 223.36317 593.130901 223.36317 370.767731 297.0654505 2.472852145 0.071437 154 3 SH1300 1300 Ile2 3' flank 24.780657 87.417485 56.099071 1.748955669 0.07142 192 49 SH6067 6067 snR37 snR37 251 268 26.206019 96.659185 61.432602 1.78839891 0.07138 97 18 SH40 40 Ala1 3' flank 31.984725 110.63344 71.3090825 1.853144849 0.071378 138 62 SH3332 3332 Thr3 tRNA 6 22 28.298744 104.452377 66.3755605 1.822008201 0.071376 98 16 SH381 381 Asn1 5' flank - tRNA3 5' flank 3 40.177075 121.822619 80.999847 1.908484199 0.071375 202 43 SH5531 5531 snR33 5' 24.567655 85.940623 55.254139 1.742364816 0.071363 106 43 SH10422 10422 RUF8 RUF8 36 55 32.184559 110.906888 71.5457235 1.85458368 0.071361 146 93 SH1263 1263 Ile2 tRNA 11 25 42.57864 125.142595 83.8606175 1.923558056 0.071358 134 70 SH16915 16915 YGL251C_7_31636_27921_INTRON_59_210 intron 47.753881 178.969863 47.753881 132.215982 89.9849315 1.95416979 0.071344 71 86 SH17233 17233 YHR077C_8_255757_252375_INTRON_7_119 intron 24.551771 109.384206 24.551771 85.832435 55.192103 1.741876942 0.07132 190 12 SH9492 9492 RUF2 3' 24.057229 82.378463 53.217846 1.726057292 0.071317 170 37 SH13258 13258 MT COX1 COX1-ai4 29.076898 134.051658 29.076898 105.97476 67.525829 1.829469925 0.071283 164 14 SH17152 17152 YHR012W_8_129473_130440_INTRON_49_167 intron 26.32428 122.542981 26.32428 97.218701 61.7714905 1.790788081 0.071277 108 31 SH4874 4874 snR8 snR8 151 163 29.914278 107.590794 68.752536 1.837288722 0.071205 35 88 SH8150 8150 snoRNA cluster 3; intergenic 25.023182 113.146249 25.023182 89.123067 57.0731245 1.756431649 0.071193 56 48 SH14573 14573 MT 21S rRNA 21S / intronic 25.714648 118.729222 25.714648 94.014574 59.864611 1.777170165 0.071193 212 5 SH10026 10026 RUF6 5' 29.121838 106.067396 67.594617 1.829912112 0.071183 167 62 SH1370 1370 Leu1 5' flank 26.329758 97.251564 61.790661 1.790922841 0.071181 80 37 SH4261 4261 telomerase RNA telomerase 341 360 25.792271 94.574994 60.1836325 1.779478397 0.071159 201 33 SH15306 15306 YAL001C_1_151163_147591_INTRON_71_160 intron 24.385562 108.063903 24.385562 84.678341 54.5319515 1.73665104 0.071152 38 36 SH11842 11842 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6096 6109 26223.37955 24199.21502 25211.29728 4.401595193 0.071137 200 93 SH2803 2803 Pro6 3' flank 23.592959 79.217621 51.40529 1.711007814 0.071114 33 94 SH3459 3459 Trp1 3' flank 24.67239 86.698401 55.6853955 1.745741309 0.071105 192 18 SH17711 17711 YKL081W_11_282533_284097_INTRON_206_531 intron 23.681552 102.505562 23.681552 79.82401 51.752781 1.713933692 0.071057 173 11 SH5167 5167 snR13 5' - 7 -9 7 284.218956 452.731421 368.4751885 2.56640825 0.071052 197 64 SH1931 1931 Lys1 3' flank 23.760374 80.361952 52.061163 1.716513866 0.071049 186 31 SH18462 18462 YMR143W_13_551927_552902_INTRON_25_568 intron 72.146478 236.543613 72.146478 165.397135 118.7718065 2.074713362 0.070942 193 44 SH4031 4031 SRP RNA SRP RNA 46 66 24.112214 82.792942 53.452578 1.727968656 0.070925 4 75 SH14638 14638 MT 21S rRNA Sce1 endonuc 25.373632 115.987801 25.373632 91.614169 58.4939005 1.767110582 0.070895 91 5 SH9504 9504 RUF3 5' 37.263828 117.778856 77.521342 1.889421282 0.070878 197 3 SH7930 7930 snoRNA cluster1 snR72 26.432959 123.189769 26.432959 97.75681 62.0948845 1.793055824 0.070878 170 4 SH15631 15631 YBR181C_2_592732_591670_INTRON_7_358 3' exon 24.950981 112.600827 24.950981 88.649846 56.8004135 1.754351497 0.070862 84 70 SH18409 18409 YMR125W_13_517538_520445_INTRON_26_347 intron 26.463155 123.362761 26.463155 97.899606 62.1813805 1.79366036 0.070857 184 7 SH16851 16851 YGL183C_7_157071_156547_INTRON_4_86 intron 26.293704 122.401923 26.293704 97.108219 61.7009615 1.790291932 0.070854 180 68 SH490 490 Asp2 tRNA 11 28 1918.148867 2432.976048 2175.562458 3.337571556 0.07082 184 58 SH4006 4006 SRP RNA 5' 24.478488 85.361634 54.920061 1.739731011 0.070809 153 23 SH6158 6158 snR39B 3' 24.575453 86.05282 55.3141365 1.742836137 0.070729 150 61 SH3666 3666 Val2 71-74 + 3' flank 71 22.932352 75.029824 48.981088 1.690028428 0.070716 126 77 SH3367 3367 Thr4 5' flank 25.22731 90.59888 57.913095 1.762776775 0.070708 95 32 SH2110 2110 Met1 5' flank 24.458968 85.235239 54.8471035 1.739153697 0.070686 34 89 SH14526 14526 MT 21S rRNA 21S rRNA3 23.996203 105.008304 23.996203 82.012101 53.004152 1.724309891 0.070677 153 18 SH4282 4282 telomerase RNA telomerase 446 461 44.641746 127.992183 86.3169645 1.936096159 0.070664 170 82 SH6140 6140 snR39B snR39B 41 57 32.645673 111.571472 72.1085725 1.857986898 0.070628 132 62 SH6109 6109 snR37 3' 27.082596 100.823561 63.9530785 1.805861455 0.070621 56 7 SH19526 19526 CBP1 1.2 64.45078 154.911157 109.6809685 2.040131277 0.070608 112 38 SH794 794 Glu1 5' flank - tRNA2 2 28.567912 105.02221 66.795061 1.824744351 0.070607 100 55 SH4011 4011 SRP RNA 5' 25.715353 94.076354 59.8958535 1.777396758 0.070605 42 4 SH17536 17536 YJL177W_10_90783_91654_INTRON_310_626 intron 25.238925 114.932972 25.238925 90.694047 57.966486 1.763176974 0.070564 136 59 SH20182 20182 YDL191W spliced 38.420547 119.439409 78.929978 1.897241982 0.070501 55 93 SH6720 6720 snR49 snR49 126 147 26.86632 99.817382 63.341851 1.80169075 0.070488 86 79 SH7898 7898 snoRNA cluster1 intergenic 42.906262 167.554773 42.906262 125.648511 84.2773865 1.925711059 0.070485 199 32 SH15689 15689 YBR191W_2_606228_607098_INTRON_12_399 intron/exon 24.343048 107.78804 24.343048 84.444992 54.39402 1.735551157 0.070423 5 78 SH14830 14830 "MT tRNAs (Lys, Arg1, Gly)" 3' 23.404723 100.439876 23.404723 78.035153 50.719938 1.705178714 0.070412 78 51 SH17596 17596 YJL191W_10_73786_74610_INTRON_11_418 intron 25.652587 118.297947 25.652587 93.64536 59.6489735 1.775602974 0.070411 109 10 SH2049 2049 Lys4 5' flank 24.048829 82.399009 53.223919 1.726106849 0.070405 103 69 SH5648 5648 snR34 snR34 161 180 26.30581 97.202391 61.7541005 1.7906658 0.07036 56 65 SH4760 4760 snR5 5' 27.103727 100.94375 64.0237385 1.80634103 0.070359 74 12 SH8777 8777 LSR1 / U2 RNA U2 526 542 23.283266 77.270364 50.276815 1.701367758 0.070318 176 33 SH9696 9696 RUF4 RUF4 256 275 25.281187 91.016129 58.148658 1.764539696 0.070305 25 58 SH5965 5965 snR36 snR36 281 300 25.257069 90.846621 58.051845 1.763816027 0.070299 21 19 SH10251 10251 RUF6 3' 24.570298 86.055592 55.312945 1.742826782 0.070293 46 65 SH13187 13187 MT COX1 Exon4 24.592586 109.806975 24.592586 86.214389 55.4034875 1.743537103 0.07028 141 71 SH2738 2738 Pro5 tRNA 71 83 1111.857476 1495.108976 1303.483226 3.115105447 0.070277 187 6 SH21026 21026 YMR116C spliced 26.56002 98.398114 62.479067 1.795734536 0.070269 9 103 SH14176 14176 MT COB intronic 23.089278 98.140469 23.089278 76.051191 49.5702345 1.695220973 0.070233 117 82 SH7497 7497 snR71 3' 24.361309 84.589952 54.4756305 1.736202265 0.070231 31 47 SH3637 3637 Val2 5' flank 24.450701 85.21829 54.8344955 1.739053852 0.070224 159 84 SH17037 17037 YGR183C_7_859471_859058_INTRON_4_216 intron 27.266842 127.990409 27.266842 101.723567 64.4952045 1.809527424 0.070216 172 35 SH16443 16443 YER074W_5_306319_307192_INTRON_4_469 intron 27.149559 127.328166 27.149559 101.178607 64.164083 1.807291992 0.070119 9 23 SH14367 14367 MT ORF9 and ORF10 (hypothetical) ORF9 / intergenic 23.737247 103.020067 23.737247 80.28282 52.0100335 1.716087134 0.070112 14 93 SH11139 11139 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2581 2594 27778.4418 25476.0225 26627.23215 4.425326025 0.070027 122 9 SH3482 3482 Tyr1 5' flank 26.750033 99.314359 63.032196 1.799562438 0.06994 60 60 SH12263 12263 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 66.806369 223.992995 66.806369 158.186626 112.4964975 2.051139001 0.069914 80 9 SH9726 9726 RUF4 RUF4 406 421 23.616853 79.479552 51.5482025 1.712213526 0.069912 212 21 SH539 539 Cys1 5' flank - tRNA11 5' flank 11 51.359447 137.223534 94.2914905 1.974472501 0.069907 163 77 SH2202 2202 Met2 3' flank 24.594427 86.261205 55.427816 1.743727767 0.069906 131 77 SH3772 3772 Val4 3' flank 24.805657 87.727373 56.266515 1.750250017 0.069897 61 28 SH6188 6188 snR40 snR40 1 19 645.357069 923.133259 784.245164 2.894451849 0.069888 178 43 SH12053 12053 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7151 7168 27.358492 102.185013 64.7717525 1.811385648 0.069853 74 99 SH10657 10657 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 171 188 260.879624 421.57377 341.226697 2.533043002 0.069841 203 67 SH21166 21166 YNL302C spliced 26.567857 98.47079 62.5193235 1.79601427 0.069804 64 12 SH15939 15939 YDL115C_4_255042_253994_INTRON_1_88 intron/exon 401.924145 1011.574367 401.924145 610.650222 506.2871835 2.704396933 0.0698 81 48 SH21537 21537 copy of SH3943 23.529701 78.897901 51.213801 1.70938701 0.0698 104 19 SH4672 4672 snR3 3' 29.191371 106.280023 67.735697 1.830817604 0.069799 171 92 SH4939 4939 snR9 snR9 101 120 46.37555 130.434556 88.405053 1.946477089 0.069797 82 51 SH16376 16376 YER003C_5_159117_157735_INTRON_32_124 intron/exon 31.608284 140.810381 31.608284 110.202097 70.9051905 1.850678028 0.069784 51 33 SH533 533 Cys1 5' flank 24.47531 85.431336 54.953323 1.739993959 0.069778 89 37 SH3714 3714 Val3 tRNA 51 65 30.360894 108.463378 69.412136 1.841435409 0.069778 121 16 SH7748 7748 snoRNA cluster1 intergenic/snR76 26.581504 124.118201 26.581504 98.536697 62.5591005 1.796290496 0.069778 95 92 SH10503 10503 RUF8 RUF8 441 457 67.999768 159.847672 113.92372 2.056614158 0.069769 182 44 SH16473 16473 YER102W_5_362729_363698_INTRON_1_360 intron 60.05063 208.025204 60.05063 148.974574 104.512602 2.01916866 0.069706 162 96 SH9611 9611 RUF3 3' 24.091101 82.753571 53.422336 1.727722875 0.069689 91 28 SH6068 6068 snR37 snR37 256 275 24.832411 87.931875 56.382143 1.751141579 0.069687 23 20 SH9367 9367 RUF1 RUF1 411 427 26.130731 96.436608 61.2836695 1.787344762 0.069684 197 57 SH4604 4604 snR3 5' 24.125689 82.996045 53.560867 1.728847598 0.069661 148 103 SH4153 4153 SRP RNA SRP RNA 656 673 25.422586 92.081587 58.7520865 1.769023295 0.069618 210 45 SH17958 17958 YLR185W_12_522665_523290_INTRON_8_366 intron 33.465207 145.189919 33.465207 112.724712 73.0949595 1.86388743 0.069618 7 73 SH20622 20622 YHR101C spliced 25.150781 90.162063 57.656422 1.760847688 0.069614 3 18 SH6469 6469 snR45 3' 47.298795 131.717103 89.507949 1.951861606 0.069571 117 97 SH4428 4428 telomerase RNA telomerase 1176 1197 23.590699 79.330713 51.460706 1.71147574 0.069566 99 95 SH9018 9018 snR17a / U3a U3a 376 394 25.263649 90.965004 58.1143265 1.764283209 0.069527 81 44 SH11297 11297 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3371 3389 23.541536 79.002283 51.2719095 1.709879492 0.069506 121 51 SH18943 18943 YOL127W_15_80347_81189_INTRON_14_427 exon/intron 27.276773 128.111518 27.276773 101.834745 64.555759 1.809934992 0.069411 151 66 SH17268 17268 YHR123W_8_354817_356083_INTRON_51_141 intron 26.884833 125.874048 26.884833 99.989215 63.437024 1.802342801 0.069406 157 70 SH7123 7123 snR63 snR63 121 138 24.578593 86.199628 55.3891105 1.743424391 0.069346 184 48 SH18939 18939 YOL121C_15_92849_92025_INTRON_21_410 3' exon 31.914999 141.565291 31.914999 110.650292 71.2826455 1.852983809 0.06928 49 83 SH15017 15017 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " cox2 / ORF1exon1 22.211594 91.920171 22.211594 70.708577 46.4600855 1.667080005 0.069279 207 17 SH6843 6843 snR52 3' 32.421337 111.341151 71.881244 1.856615585 0.069268 187 13 SH14558 14558 MT 21S rRNA 21S rRNA3 15067.3005 29946.60137 15067.3005 14880.30088 14973.80069 4.175332048 0.069236 206 73 SH15117 15117 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 3' 24.243342 107.097992 24.243342 83.85465 54.048996 1.732787631 0.06921 209 84 SH12692 12692 MT ORF 8 (hypothetical) 5' 24.421763 108.527146 24.421763 85.105383 54.763573 1.738491776 0.069206 163 34 SH18283 18283 YML067C_13_140214_139063_INTRON_32_124 exon/intron 24.42762 108.575633 24.42762 85.148013 54.7878165 1.738683993 0.06919 6 48 SH17635 17635 YJR094W-A_10_608000_608553_INTRON_3_277 intron 23.891122 104.308273 23.891122 81.417151 52.6541365 1.721432495 0.069168 65 58 SH4994 4994 snR10 snR10 1 18 200.573347 340.728104 270.6507255 2.432409196 0.069166 22 87 SH14063 14063 MT COB Cytbi4 113.178939 334.663223 113.178939 222.484284 167.8316115 2.224873765 0.069155 63 16 SH5330 5330 snR30 snR30 501 517 25.986936 95.806946 60.896941 1.784595478 0.069144 156 94 SH16695 16695 YGL031C_7_438393_437938_INTRON_1_456 exon/intron 33.828298 146.080092 33.828298 113.251794 73.540046 1.866523897 0.069136 68 8 SH4130 4130 SRP RNA SRP RNA 541 555 258.969246 419.204312 339.086779 2.530310857 0.069095 88 3 SH592 592 Gln1 tRNA 1 17 846.310413 1173.254722 1009.782568 3.004227869 0.069093 172 32 SH6545 6545 snR46 3' 25.019647 89.291697 57.155672 1.757059335 0.069081 164 22 SH14480 14480 MT 21S rRNA 21S rRNA3 23.970777 104.947183 23.970777 81.976406 52.9735915 1.724059418 0.069047 34 95 SH7878 7878 snoRNA cluster1 snR73 26.553566 124.018032 26.553566 98.464466 62.509016 1.795942662 0.069019 188 13 SH16984 16984 YGR118W_7_726968_727725_INTRON_66_385 5' exon 30.479937 138.152013 30.479937 108.672076 69.5760065 1.842459498 0.069 42 95 SH8284 8284 snoRNA cluster4 intergenic 26.844654 125.677448 26.844654 99.832794 63.338724 1.80166931 0.068992 33 20 SH9701 9701 RUF4 RUF4 281 301 23.911623 81.574296 52.7429595 1.722164495 0.06898 19 93 SH2051 2051 Lys4 5' flank 23.868313 81.278872 52.5735925 1.720767655 0.06895 100 101 SH7027 7027 snR62 5' 43.007995 125.886964 84.4474795 1.926586692 0.068939 51 82 SH822 822 Glu1 3' flank 25.040353 89.453282 57.2468175 1.757751348 0.068899 94 16 SH8780 8780 LSR1 / U2 RNA U2 541 553 58.182184 146.540979 102.3615815 2.010136987 0.068897 124 85 SH4921 4921 snR9 snR9 11 32 41.571033 123.901785 82.736409 1.917696667 0.068897 24 55 SH833 833 Glu2 5' flank 24.358762 84.690678 54.52472 1.736593444 0.068891 44 66 SH8224 8224 snoRNA cluster 3; snR51/3' 24.985873 113.064345 24.985873 89.078472 57.0321725 1.756119915 0.06883 109 88 SH20359 20359 YER131W spliced 62.015444 151.754732 106.885088 2.028917119 0.068824 193 67 SH3690 3690 Val3 5' flank 23.585641 79.357996 51.4718185 1.711569512 0.068824 102 88 SH20415 20415 YGL030W spliced 79.945985 176.401827 128.173906 2.107799619 0.068816 103 46 SH18688 18688 YNL112W_14_413636_416278_INTRON_1274_2275 intron 24.331758 107.840715 24.331758 84.508957 54.4203575 1.73576139 0.068804 128 94 SH21821 21821 copy of SH16001 25.500803 92.71646 59.1086315 1.771650905 0.06879 183 7 SH14199 14199 MT COB Exon6 23.999049 105.193975 23.999049 82.194926 53.0969875 1.725069882 0.068777 194 67 SH15817 15817 YDL061C_4_341182_340627_INTRON_1_408 3' exon 24.806477 111.640393 24.806477 87.833916 56.3201965 1.750664161 0.068777 112 3 SH1282 1282 Ile2 tRNA 106 120 29.883447 107.672098 68.7777725 1.837448106 0.068749 210 10 SH18352 18352 YML124C_13_23684_22049_INTRON_26_323 3' exon 25.680034 118.684874 25.680034 94.00484 59.842437 1.777009271 0.06872 33 66 SH6522 6522 snR46 snR46 101 118 29.686964 107.298568 68.492766 1.835644705 0.06869 173 88 SH16818 16818 YGL178W_7_167356_170575_INTRON_4_643 intron 28.039498 131.13058 28.039498 104.091082 66.06529 1.819973346 0.068687 33 47 SH6704 6704 snR49 snR49 46 62 28.359168 104.722558 66.540863 1.823088429 0.068645 29 70 SH17574 17574 YJL191W_10_73786_74610_INTRON_11_418 5' exon 27.498414 129.443972 27.498414 102.945558 65.221986 1.814394019 0.06862 121 62 SH4083 4083 SRP RNA SRP RNA 306 318 30.488555 108.704559 69.596557 1.842587755 0.068613 126 44 SH17477 17477 YJL001W_10_434855_435618_INTRON_66_181 intron 24.463292 108.918574 24.463292 85.455282 54.959287 1.74004109 0.068563 209 28 SH20876 20876 YLR185W spliced 125.627488 239.570609 182.5990485 2.26149851 0.068562 96 48 SH10126 10126 RUF6 RUF6 476 491 28.236572 104.487007 66.3617895 1.821918089 0.068549 189 4 SH12644 12644 MT_15S MT_15S 24.43829 108.719014 24.43829 85.280724 54.859507 1.7392519 0.068544 214 27 SH3398 3398 Thr4 3' flank 24.333358 84.546751 54.4400545 1.735918551 0.068504 115 26 SH7395 7395 snR68 3' 64.587573 155.274347 109.93096 2.041120021 0.06847 137 93 SH9738 9738 RUF4 RUF4 466 483 24.388016 84.93411 54.661063 1.737678073 0.068464 15 80 SH12570 12570 MT_15S MT_15S 24.422661 108.600699 24.422661 85.178038 54.8003495 1.738783328 0.068462 100 27 SH12577 12577 MT_15S MT_15S 29.748861 136.179292 29.748861 107.430431 68.589646 1.836258561 0.068462 146 28 SH21749 21749 copy of SH12970 25.618042 93.589804 59.603923 1.775274845 0.068415 132 102 SH5349 5349 snR30 596-601+3' 596 25.663802 93.920488 59.792145 1.776644134 0.068387 108 19 SH21316 21316 YPL249C-A spliced 32.897376 112.032159 72.4647675 1.860126903 0.068381 4 100 SH11395 11395 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3861 3877 28759.35896 26294.32235 27526.84066 4.439756369 0.068373 150 17 SH18025 18025 YLR306W_12_744151_744851_INTRON_4_137 intron 24.482151 109.089252 24.482151 85.607101 55.044626 1.740714925 0.068353 178 20 SH9195 9195 snR7 U5 RNA 3' 26.834939 99.84072 63.3378295 1.801663177 0.068308 120 33 SH17602 17602 YJL205C-A_10_50443_50139_INTRON_33_175 intron 24.515107 109.361114 24.515107 85.846007 55.180557 1.74178608 0.068285 213 36 SH19455 19455 CYC1 23.723831 80.346904 52.0353675 1.716298626 0.068258 64 99 SH8518 8518 snR19 / U1 RNA U1 86 107 24.617615 86.582862 55.6002385 1.745076655 0.068158 58 65 SH9820 9820 RUF5-1 5' 39.472938 121.04925 80.261094 1.904505075 0.068156 156 36 SH10083 10083 RUF6 RUF6 261 282 28.954776 105.914736 67.434756 1.82888379 0.068135 156 101 SH13879 13879 MT COB intronic 22.739977 95.765046 22.739977 74.025069 48.382523 1.684688512 0.068121 34 71 SH15807 15807 YDL061C_4_341182_340627_INTRON_1_408 intron 25.571162 117.855173 25.571162 93.284011 59.4275865 1.773988093 0.068106 154 23 SH12245 12245 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 22.508356 94.101 22.508356 72.592644 47.5505 1.677155088 0.068096 179 72 SH18221 18221 YML026C_13_223828_222987_INTRON_48_448 5' exon 25.931782 120.560574 25.931782 95.628792 60.780287 1.783762746 0.068093 121 21 SH14278 14278 MT VAR1 includes 5’ processing site VAR1 26.195401 122.054632 26.195401 96.859231 61.527316 1.78906797 0.068092 107 18 SH13496 13496 MT COX1 intronic 27.207314 127.820543 27.207314 101.613229 64.4102715 1.80895513 0.068079 83 22 SH4779 4779 snR5 snR5 66 81 31.908691 110.706182 71.3074365 1.853134824 0.068074 213 104 SH7470 7470 snR71 5' 23.215488 77.015606 50.115547 1.699972475 0.068069 63 86 SH17497 17497 YJL041W_10_365480_368069_INTRON_2_119 intron 25.686596 118.801488 25.686596 94.114892 59.900744 1.777432217 0.068068 148 2 SH7119 7119 snR63 snR63 101 120 24.630138 86.681515 55.6558265 1.745510636 0.06802 65 49 SH4241 4241 telomerase RNA telomerase 241 255 35.887019 116.109893 75.998456 1.880804769 0.067959 45 23 SH2702 2702 Pro4 3' flank 27.375074 102.41557 64.895322 1.812213392 0.067957 72 103 SH16146 16146 YDR092W_4_629869_630598_INTRON_31_298 intron 27.124637 127.357398 27.124637 101.232761 64.178699 1.807390909 0.067957 18 97 SH13645 13645 MT ATP6 ATP6 23.730996 103.153631 23.730996 80.422635 52.0768155 1.716644419 0.06794 103 82 SH20920 20920 YLR344W spliced 25.687105 94.131747 59.909426 1.777495159 0.067931 143 78 SH1080 1080 Gly3 3' flank 29.082111 106.173851 67.627981 1.830126422 0.067926 81 16 SH21679 21679 copy of SH10029 25.966981 95.806841 60.886911 1.784523941 0.067908 192 13 SH15829 15829 YDL075W_4_322225_322987_INTRON_58_478 5' exon 28.420093 132.303677 28.420093 104.883584 66.6518385 1.823812133 0.0679 43 86 SH653 653 Gln2 tRNA 51 63 47.724932 132.412109 90.0685205 1.954573029 0.067898 54 49 SH11407 11407 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3921 3936 32.093835 110.970835 71.532335 1.854502402 0.067863 49 58 SH20390 20390 YFL039C spliced 28.586247 105.213833 66.90004 1.825426377 0.067815 194 20 SH20774 20774 YKL006C-A spliced 28.022155 104.10544 66.0637975 1.819963534 0.067807 11 28 SH9952 9952 RUF5-1 RUF5-1 566 582 30.890482 109.311115 70.1007985 1.845722965 0.067805 134 36 SH15919 15919 YDL083C_4_307788_306925_INTRON_25_456 intron 23.60026 102.147186 23.60026 79.546926 51.573593 1.712427389 0.067746 129 74 SH13860 13860 MT COB Cytbi2 23.685554 102.814185 23.685554 80.128631 51.9070925 1.715226703 0.067743 73 94 SH6277 6277 snR42 snR42 166 185 26.429301 97.980597 62.204949 1.793824938 0.067741 132 103 SH21231 21231 YOR234C spliced 25.609848 93.59867 59.604259 1.775277293 0.067712 157 48 SH5520 5520 snR32 3' 26.727132 99.382261 63.0546965 1.79971744 0.067689 84 103 SH1024 1024 Gly2 3' flank 21.244343 65.171007 43.207675 1.635560898 0.067579 214 34 SH13472 13472 MT COX1 intronic 25.600149 118.144981 25.600149 93.544832 59.5724905 1.775045757 0.067549 88 5 SH18790 18790 YNL301C_14_64561_63569_INTRON_113_544 intron 23.85106 104.132321 23.85106 81.281261 52.5661605 1.720706257 0.067527 47 38 SH17265 17265 YHR123W_8_354817_356083_INTRON_51_141 5' exon 24.89716 112.475517 24.89716 88.578357 56.7377585 1.753872174 0.067522 91 56 SH10025 10025 RUF6 5' 28.087887 104.251125 66.169506 1.820657892 0.067519 181 82 SH12630 12630 MT_15S MT_15S 23.878629 104.352797 23.878629 81.474168 52.6763985 1.721616074 0.06749 57 50 SH9325 9325 RUF1 RUF1 201 220 39.202686 120.714995 79.9588405 1.902866488 0.067483 181 9 SH15946 15946 YDL125C_4_239605_239018_INTRON_98_208 intron 25.836656 120.068491 25.836656 95.231835 60.5342455 1.782001134 0.067475 213 97 SH12447 12447 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.401872 128.98388 27.401872 102.582008 64.99194 1.812859501 0.067463 89 28 SH20206 20206 YDR059C spliced 330.549543 516.411354 423.4804485 2.626833364 0.067444 130 55 SH4253 4253 telomerase RNA telomerase 301 319 26.847842 99.969252 63.408547 1.802147801 0.067442 79 5 SH9025 9025 snR17a / U3a U3a 411 427 34.789886 114.663486 74.726686 1.873475722 0.067427 208 60 SH2101 2101 Lys4 3' flank 26.405352 97.896148 62.15075 1.793446374 0.06738 11 17 SH17817 17817 YKR057W_11_551293_551878_INTRON_25_346 intron 28.771194 133.371024 28.771194 105.59983 67.185512 1.827275631 0.067375 178 56 SH7040 7040 snR62 5' - 10 -9 10 24.608318 86.591813 55.6000655 1.745075303 0.067336 113 80 SH8619 8619 snR19 / U1 RNA U1 591 603 32.184997 111.126376 71.6556865 1.855250661 0.067283 109 51 SH2665 2665 Pro4 5' flank - tRNA5 5 93.025642 194.67919 143.852416 2.15791716 0.067275 200 69 SH12044 12044 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7106 7123 33.342708 112.689412 73.01606 1.863418394 0.067269 114 37 SH11288 11288 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3326 3343 90.739047 191.535188 141.1371175 2.149641243 0.067255 133 19 SH12057 12057 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7171 7188 28.123718 104.33882 66.231269 1.821063076 0.067212 17 50 SH10946 10946 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1616 1629 48.110192 132.983603 90.5468975 1.956873574 0.067195 206 8 SH15499 15499 YBL092W_2_45639_46364_INTRON_1_333 intron 23.928678 104.775545 23.928678 81.846867 52.8877725 1.723355276 0.067167 161 80 SH11325 11325 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3511 3524 9330.829411 9778.312212 9554.570812 3.980211183 0.067165 61 33 SH12781 12781 MT COX1 COX1ai1 30.583113 138.49726 30.583113 108.914147 69.74863 1.843535682 0.067159 149 11 SH18115 18115 YLR367W_12_855877_857316_INTRON_698_1180 intron/exon 24.99565 113.29638 24.99565 89.30073 57.14819 1.75700248 0.067149 45 104 SH14778 14778 MT ORF11; tRNA Leu; tRNA Gln tRNA Gln 25.568166 117.924541 25.568166 93.356375 59.4622705 1.774241488 0.067126 175 20 SH19564 19564 CBP1 2.2 24.292689 84.387791 54.34024 1.735121552 0.067075 79 3 SH9326 9326 RUF1 RUF1 206 223 98.867386 202.887773 150.8775795 2.178624708 0.067069 45 65 SH394 394 Asn1 51-66 51 66 98.269707 202.05856 150.1641335 2.176566214 0.067057 35 96 SH222 222 Arg3 5' flank 28.406657 104.904578 66.6556175 1.823836756 0.067049 121 39 SH11775 11775 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5761 5777 232.647508 384.278548 308.463028 2.489203117 0.067014 123 74 SH1293 1293 Ile2 3' flank 25.904126 95.58607 60.745098 1.783511237 0.066944 155 39 SH20828 20828 YKR094C spliced 27.053301 100.980333 64.016817 1.806294077 0.066897 125 32 SH8680 8680 LSR1 / U2 RNA U2 41 58 28.752001 105.589426 67.1707135 1.827179961 0.066892 150 33 SH2763 2763 Pro6 5' flank 25.556685 93.300029 59.428357 1.773993724 0.066856 161 50 SH6697 6697 snR49 snR49 11 27 26.319251 97.533164 61.9262075 1.791874484 0.066853 4 103 SH12925 12925 MT COX1 COX1ai2 584.435657 1431.304366 584.435657 847.868709 716.152183 2.85500532 0.066831 130 33 SH793 793 Glu1 5' flank 27.195959 101.659486 64.4277225 1.809072779 0.066826 11 20 SH8596 8596 snR19 / U1 RNA U1 476 493 25.624288 93.789107 59.7066975 1.77602305 0.066807 95 11 SH18110 18110 YLR367W_12_855877_857316_INTRON_698_1180 intron 26.306703 122.785307 26.306703 97.478604 61.8926535 1.791639102 0.066798 212 26 SH11649 11649 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5131 5149 25.180389 90.637745 57.909067 1.762746568 0.066733 177 65 SH6717 6717 snR49 snR49 111 131 24.088456 82.994209 53.5413325 1.728689175 0.066702 48 65 SH5230 5230 snR30 snR30 1 16 50.269813 135.957003 93.113408 1.969012222 0.066661 176 80 SH12238 12238 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.806758 103.857066 23.806758 81.050308 52.428533 1.719567706 0.066659 116 66 SH17321 17321 YIL004C_9_348502_347943_INTRON_12_142 exon/intron 32.176292 142.324847 32.176292 111.148555 71.6624235 1.855291491 0.06665 175 96 SH8241 8241 snoRNA cluster 3; 3' 23.968758 105.143014 23.968758 82.174256 53.071507 1.72486142 0.06658 60 31 SH21509 21509 copy of SH2854 63.909727 154.523921 109.216824 2.038289543 0.066512 170 59 SH21571 21571 copy of SH5386 28.428603 104.977873 66.703238 1.824146917 0.066507 49 101 SH12075 12075 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7261 7281 24.752406 87.664854 56.20863 1.749803 0.066486 146 76 SH1476 1476 Leu2 3' flank 54.574521 141.815898 98.1952095 1.992090301 0.066447 12 66 SH20848 20848 YLR048W spliced 36.804648 117.411397 77.1080225 1.887099565 0.066445 196 36 SH13476 13476 MT COX1 intronic 24.237077 107.291008 24.237077 84.053931 54.145504 1.733562401 0.066442 168 68 SH654 654 Gln2 tRNA 56 70 70.773238 163.933413 117.3533255 2.069495401 0.06643 41 56 SH110 110 Arg1 5' flank 25.079287 89.953883 57.516585 1.759793092 0.066428 205 88 SH10627 10627 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 21 39 32.809589 112.022547 72.416068 1.85983494 0.066375 3 6 SH7690 7690 snoRNA cluster1 intergenic 24.577378 110.041783 24.577378 86.464405 55.5208915 1.744456431 0.066319 5 71 SH18336 18336 YML124C_13_23684_22049_INTRON_26_323 exon/intron 24.630292 110.465475 24.630292 86.835183 55.7327375 1.746110375 0.066305 145 84 SH17404 17404 YIL069C_9_232366_231550_INTRON_4_412 intron 26.949301 126.488945 26.949301 100.539644 63.7444725 1.804442532 0.066267 63 53 SH15500 15500 YBL092W_2_45639_46364_INTRON_1_333 intron/exon 26.786972 125.563145 26.786972 99.776173 63.2815725 1.801277263 0.06625 8 31 SH4660 4660 snR3 3' 23.660493 80.085424 51.8729585 1.714941018 0.066216 112 89 SH18448 18448 YMR142C_13_551206_550205_INTRON_5_406 3' exon 24.642211 110.568172 24.642211 86.925961 55.784086 1.746510322 0.066211 132 90 SH13542 13542 MT COX1 intronic 26.421945 123.485707 26.421945 98.063762 62.2428535 1.794089495 0.066211 102 79 SH215 215 Arg3 5' flank 24.069578 82.905968 53.487773 1.728254516 0.066206 54 10 SH985 985 Gly2 5' flank 25.243851 91.138104 58.1909775 1.764855653 0.066176 78 91 SH11822 11822 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5996 6011 54.537424 141.784975 98.1611995 1.991939857 0.066176 7 68 SH14537 14537 MT 21S rRNA 21S rRNA3 24.245278 107.380602 24.245278 84.135324 54.190301 1.733921563 0.06617 66 90 SH21606 21606 copy of SH6882 22.181414 70.748148 46.464781 1.667123895 0.06616 37 69 SH20748 20748 YJL205C-A spliced 23.429961 78.534196 50.9820785 1.707417537 0.066135 167 81 SH821 821 Glu1 3' flank 24.619712 86.77732 55.698516 1.745843624 0.066134 26 3 SH12568 12568 MT_15S MT_15S 25.286796 115.733255 25.286796 91.446459 58.3666275 1.7661646 0.066131 148 12 SH16593 16593 YFL034C-A_6_64931_64242_INTRON_13_333 intron 27.011713 126.856557 27.011713 100.844844 63.9282785 1.80569301 0.06613 16 21 SH6260 6260 snR42 snR42 81 98 25.011927 89.510295 57.261111 1.75785977 0.066108 99 43 SH3619 3619 Val1 3' flank 24.050757 82.789499 53.420128 1.727704924 0.06604 146 90 SH2776 2776 Pro6 5' flank 30.646178 109.064036 69.855107 1.844198162 0.065998 165 99 SH5591 5591 snR33 3' 23.431383 78.555041 50.993212 1.707512369 0.065987 64 52 SH12059 12059 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7181 7194 28.863373 105.862818 67.3630955 1.828422036 0.065892 160 14 SH21056 21056 YMR194W spliced 212.585389 357.570917 285.078153 2.454963936 0.065877 206 77 SH3365 3365 Thr4 5' flank 23.951931 82.121114 53.0365225 1.72457504 0.065844 165 89 SH15959 15959 YDL130W_4_229906_230527_INTRON_115_415 intron 26.172316 122.095213 26.172316 96.922897 61.5476065 1.789211168 0.065834 166 87 SH3726 3726 Val3 3' flank 26.236984 97.226131 61.7315575 1.790507234 0.065829 72 35 SH15229 15229 MT COX3 cox3 23.267927 99.794231 23.267927 77.526304 50.3971155 1.70240568 0.065792 76 80 SH3829 3829 RNaseP RNaseP 111 123 28.0316 104.235789 66.1336945 1.820422785 0.065787 56 94 SH5731 5731 snR34 3' 26.630624 99.076993 62.8538085 1.798331598 0.065783 37 30 SH10398 10398 RUF8 5' 29.632522 107.359827 68.4961745 1.835666317 0.065776 114 86 SH18186 18186 YML024W_13_225889_226697_INTRON_4_401 5' exon 28.108615 131.49762 28.108615 104.389005 66.24881 1.821178082 0.065768 17 61 SH5090 5090 snR11 snR11 51 67 24.300201 84.556229 54.428215 1.735824092 0.065766 30 26 SH6774 6774 snR50 snR50 46 66 36.538562 117.102898 76.82073 1.88547843 0.06571 12 6 SH9641 9641 RUF4 5' 77.859513 173.801824 125.8306685 2.099786504 0.065701 10 20 SH103 103 Ala2 3' flank 25.699789 94.440018 60.0699035 1.778656934 0.065687 46 70 SH20224 20224 YDR129C spliced 24.106961 83.212368 53.6596645 1.729647953 0.065674 84 75 SH12338 12338 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.981077 131.126892 27.981077 104.145815 66.063446 1.819961224 0.065607 80 88 SH20010 20010 YBR082C spliced 26.031568 96.284506 61.158037 1.786453537 0.065571 22 101 SH9609 9609 RUF3 431 + 3' 431 24.545862 86.308577 55.4272195 1.743723093 0.065567 42 67 SH7945 7945 snoRNA cluster1 3' 25.280845 115.73858 25.280845 91.457735 58.36929 1.766184411 0.065561 101 20 SH14916 14916 MT tRNA Tyr tRNA 25.482949 117.380281 25.482949 92.897332 59.1901405 1.772249371 0.065552 41 24 SH6210 6210 snR40 3' 23.322016 77.891196 50.606606 1.704207212 0.065536 208 48 SH13462 13462 MT COX1 intronic 24.268063 107.61907 24.268063 84.351007 54.309535 1.734876084 0.065535 36 29 SH17552 17552 YJL189W_10_75932_76473_INTRON_7_392 exon/intron 27.421771 129.25413 27.421771 102.832359 65.127065 1.813761507 0.065526 161 77 SH18721 18721 YNL130C_14_381156_379555_INTRON_30_470 3' exon 28.795856 133.547747 28.795856 105.751891 67.2738735 1.827846434 0.065522 156 64 SH7763 7763 snoRNA cluster1 snR76 37.166353 154.125165 37.166353 117.958812 77.5625825 1.889652261 0.065492 57 24 SH8106 8106 snoRNA cluster 3; 5' 28.153813 131.647628 28.153813 104.493815 66.323814 1.821669493 0.065486 50 57 SH1145 1145 His1 5' flank 24.299514 84.576582 54.438048 1.735902544 0.065481 41 93 SH12267 12267 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.161369 134.627551 29.161369 106.466182 67.8137755 1.831317924 0.065472 28 2 SH15865 15865 YDL079C_4_314747_312950_INTRON_413_704 intron 25.115199 114.415831 25.115199 90.300632 57.7079155 1.761235387 0.065412 193 54 SH7609 7609 snR189 snR189 116 133 26.007181 96.182589 61.094885 1.786004852 0.065411 144 24 SH3363 3363 Thr4 5' flank 23.245891 77.419559 50.332725 1.701850444 0.065363 18 57 SH12632 12632 MT_15S MT_15S 24.231753 107.343822 24.231753 84.112069 54.171911 1.733774156 0.065357 66 92 SH12176 12176 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7766 7783 48.04587 133.023033 90.5344515 1.956813875 0.06535 171 35 SH20147 20147 YDL115C spliced 27.092194 101.287071 64.1896325 1.807464889 0.065346 185 58 SH11864 11864 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6206 6221 24.552415 86.377376 55.4648955 1.744018199 0.065321 48 10 SH7352 7352 snR68 5' - 2 -19 2 22.632139 73.565393 48.098766 1.682133934 0.065291 21 77 SH17033 17033 YGR183C_7_859471_859058_INTRON_4_216 intron 26.661819 124.924677 26.661819 99.262858 62.9623385 1.79908085 0.06528 98 90 SH14098 14098 MT COB Cytbi4 25.656684 118.827093 25.656684 94.170409 59.9135465 1.777525028 0.065267 203 59 SH19894 19894 snR17A spliced 26.5145 98.574737 62.5446185 1.796189948 0.065221 24 3 SH14827 14827 "MT tRNAs (Lys, Arg1, Gly)" 3' 25.429901 116.980319 25.429901 92.550418 58.9901595 1.77077957 0.065217 150 16 SH20749 20749 YJR021C spliced 28.670985 105.52619 67.0985875 1.826713378 0.065195 203 69 SH11116 11116 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2466 2483 31.316161 110.045999 70.68108 1.849303177 0.065129 190 104 SH17213 17213 YHR039C-A_8_187670_187164_INTRON_4_165 intron/exon 25.420766 116.915967 25.420766 92.495201 58.9579835 1.770542621 0.065112 208 45 SH11066 11066 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2216 2233 23676.71315 22206.18635 22941.44975 4.360620859 0.065079 7 36 SH3370 3370 Thr4 5' flank 25.760403 94.936457 60.34843 1.780665976 0.065078 59 84 SH10541 10541 RUF8 RUF8 631 647 26.791015 99.887814 63.3394145 1.801674045 0.065068 125 7 SH6563 6563 snR47 5' 26.8312 100.077549 63.4543745 1.802461567 0.065064 77 89 SH18908 18908 YOL120C_15_94401_93394_INTRON_113_559 intron 24.442422 109.064998 24.442422 85.622576 55.032499 1.740619234 0.065047 6 37 SH851 851 Glu2 tRNA 21 37 439.958414 662.545668 551.252041 2.74135021 0.065 23 76 SH360 360 Arg5 3' flank 28.922142 106.028345 67.4752435 1.82914446 0.064986 178 74 SH10688 10688 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 326 343 25.837335 95.421684 60.6295095 1.782684055 0.064979 193 11 SH7770 7770 snoRNA cluster1 snR76/intergenic 25.268279 115.692369 25.268279 91.42409 58.3461845 1.766012461 0.06497 158 29 SH10915 10915 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1461 1474 27.143184 101.558438 64.350811 1.808554025 0.064965 42 10 SH7506 7506 snR71 3' 24.562903 86.485161 55.524032 1.744480996 0.064953 45 95 SH14066 14066 MT COB Cytbi4 24.366775 108.464652 24.366775 85.097877 54.732326 1.738243905 0.064941 9 67 SH6786 6786 snR50 3' 22.247441 71.229841 46.738641 1.66967608 0.064927 96 82 SH6548 6548 snR46 3' 24.558298 86.456271 55.5072845 1.744349982 0.06491 70 39 SH20784 20784 YKL006W spliced 25.134762 90.486738 57.81075 1.762008604 0.064893 208 36 SH21578 21578 copy of SH5624 24.185999 83.835701 54.01085 1.732481012 0.064856 192 70 SH18408 18408 YMR125W_13_517538_520445_INTRON_26_347 intron 23.847772 104.336568 23.847772 81.488796 52.668284 1.721549169 0.064823 174 75 SH1462 1462 Leu2 tRNA 81 97 10311.32671 10691.82501 10501.57586 4.021254474 0.064819 129 51 SH15917 15917 YDL083C_4_307788_306925_INTRON_25_456 intron 22.905136 97.213546 22.905136 75.30841 49.106773 1.691141396 0.064793 60 46 SH1272 1272 Ile2 tRNA-intron 56 72 33.955704 113.669421 73.8125625 1.868130283 0.06478 53 97 SH15854 15854 YDL079C_4_314747_312950_INTRON_413_704 5' exon 24.690597 111.080278 24.690597 87.389681 56.040139 1.748499204 0.064773 26 80 SH917 917 Glu3 3' flank 23.098571 76.532014 49.8152925 1.697362685 0.064748 96 87 SH18345 18345 YML124C_13_23684_22049_INTRON_26_323 intron 24.304028 107.979903 24.304028 84.675875 54.4899515 1.736316421 0.064718 128 53 SH5422 5422 snR31 snR31 176 192 27.319508 102.415092 64.8673 1.812025821 0.06469 126 64 SH7960 7960 snoRNA cluster 2 5' 23.627349 102.614329 23.627349 79.98698 51.8071645 1.714389823 0.064686 101 83 SH18809 18809 YNL302C_14_62942_61957_INTRON_21_571 5' exon 29.525321 135.742421 29.525321 107.2171 68.3712105 1.834873269 0.064653 195 38 SH14034 14034 MT COB Cytbi4 28.597168 133.01072 28.597168 105.413552 67.00536 1.826109545 0.064625 63 104 SH18684 18684 YNL112W_14_413636_416278_INTRON_1274_2275 intron 24.167819 106.896829 24.167819 83.72901 53.9484145 1.731978686 0.064623 79 103 SH20426 20426 YGL033W spliced 45.204471 129.153418 87.1789445 1.940411607 0.064622 32 33 SH13435 13435 MT COX1 intronic 81.86256 260.354622 81.86256 179.492062 130.677311 2.116200189 0.064617 29 56 SH20996 20996 YML085C spliced 24.668427 87.25026 55.9593435 1.747872611 0.064613 156 13 SH408 408 Asn1 3' flank 26.752786 99.743755 63.2482705 1.801048654 0.064607 140 93 SH17927 17927 YLR078C_12_286560_285737_INTRON_4_92 intron 27.615683 130.091707 27.615683 103.476024 65.5458535 1.816545223 0.064598 152 104 SH16894 16894 YGL226C-A_7_73156_72747_INTRON_22_170 exon/intron 27.108134 127.530145 27.108134 101.422011 64.2650725 1.807975002 0.064597 209 62 SH6609 6609 snR47 3' 24.128288 83.456434 53.792361 1.730720606 0.064581 8 103 SH10230 10230 RUF6 RUF6 996 1015 23.041053 76.181299 49.611176 1.695579522 0.064578 188 3 SH6241 6241 snR42 5' - 5 -14 5 26.676439 99.387454 63.0319465 1.799560719 0.064564 149 72 SH16187 16187 YDR367W_4_1212837_1213603_INTRON_31_131 intron 26.925735 126.489713 26.925735 100.563978 63.7448565 1.804445148 0.064549 193 27 SH14942 14942 MT tRNA Met 5' 24.109221 106.435691 24.109221 83.32647 53.7178455 1.730118586 0.064545 134 25 SH251 251 Arg3 3' flank 26.343987 97.826125 62.085056 1.792987077 0.064544 46 40 SH21677 21677 copy of SH9840 27.030199 101.06071 64.0454545 1.806488312 0.064507 137 80 SH7924 7924 snoRNA cluster1 snR72 52.75556 191.270514 52.75556 139.514954 96.135257 1.982882692 0.064493 38 32 SH2955 2955 Ser1 tRNA 6 18 1039.589934 1413.257002 1226.423468 3.088640452 0.06448 46 37 SH8509 8509 snR19 / U1 RNA U1 41 60 25.015105 89.684802 57.3499535 1.75853307 0.064452 80 79 SH559 559 Cys1 3' flank 22.257482 71.323746 46.790614 1.670158744 0.064451 99 15 SH7393 7393 snR68 3' 495.935439 735.602188 615.7688135 2.78941769 0.064437 83 38 SH20831 20831 YKR094C spliced 24.873806 88.696294 56.78505 1.754234013 0.064432 188 4 SH14929 14929 MT tRNA Asn 5' 24.418068 108.926334 24.418068 85.508266 54.963167 1.740071749 0.0644 126 8 SH7317 7317 snR66 76-86 + 3' 76 24.972823 89.392941 57.182882 1.75726604 0.064397 191 37 SH13730 13730 MT COB Exon1 24.184644 107.057542 24.184644 83.872898 54.028771 1.732625089 0.064324 29 69 SH4114 4114 SRP RNA SRP RNA 461 477 27.445306 103.041712 65.243509 1.814537311 0.064316 48 3 SH6255 6255 snR42 snR42 56 77 23.549649 79.488879 51.519264 1.71196965 0.064302 30 89 SH357 357 Arg5 3' flank 4896.721458 5563.93567 5230.328564 3.718528972 0.064181 119 59 SH3881 3881 RNaseP 3' 27.180809 101.799278 64.4900435 1.80949267 0.064177 155 29 SH1488 1488 Leu3 5' flank 23.08176 76.470631 49.7761955 1.697021699 0.064164 176 75 SH2853 2853 Pro7 tRNA 71 83 1172.189438 1573.921908 1373.055673 3.137688147 0.064133 212 94 SH13748 13748 MT COB Exon1 24.553551 110.047789 24.553551 86.494238 55.5238945 1.74447992 0.064118 213 83 SH206 206 Arg2 3' flank 34.348203 114.246482 74.2973425 1.87097328 0.064112 79 97 SH5835 5835 snR35 snR35 361 378 24.853168 88.583022 56.718095 1.753721636 0.064092 36 47 SH12805 12805 MT COX1 COX1ai1 24.182176 107.060242 24.182176 83.878066 54.030121 1.73263594 0.064069 62 94 SH15496 15496 YBL092W_2_45639_46364_INTRON_1_333 intron 37.506932 155.040584 37.506932 118.533652 78.020292 1.892207571 0.06402 72 36 SH9695 9695 RUF4 RUF4 251 271 25.241262 91.321962 58.281612 1.765531555 0.064016 25 18 SH5928 5928 snR36 snR36 96 112 48.173539 133.292469 90.733004 1.95776529 0.063953 164 93 SH15869 15869 YDL079C_4_314747_312950_INTRON_413_704 intron 25.000659 113.630113 25.000659 89.629454 57.3150565 1.758268725 0.06395 111 97 SH2731 2731 Pro5 tRNA-exon/intron 36 48 30.97981 109.640168 70.309989 1.84701703 0.063948 45 32 SH11211 11211 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2941 2954 52.965576 139.841783 96.4036795 1.98409361 0.063908 116 68 SH4486 4486 U3b (snR17b) 5' - 6 6 26.456051 98.403608 62.4298295 1.795392149 0.06388 211 70 SH3340 3340 Thr3 tRNA 46 63 24.838683 88.504676 56.6716795 1.753366083 0.06384 191 62 SH8660 8660 LSR1 / U2 RNA 5' 23.008451 76.036711 49.522581 1.694803271 0.063779 77 91 SH6787 6787 snR50 3' 22.524711 73.012146 47.7684285 1.679140954 0.06376 135 19 SH13077 13077 MT COX1 COX1ai3 24.374126 108.629336 24.374126 85.25521 54.814668 1.738896788 0.063758 87 5 SH17803 17803 YKL190W_11_82949_83552_INTRON_53_128 intron 88.304997 275.841513 88.304997 188.536516 138.4207565 2.141201218 0.063732 114 84 SH10735 10735 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 561 579 26.476765 98.513526 62.4951455 1.795846284 0.063718 120 71 SH21938 21938 copy of SH19621 24.830537 88.461679 56.646108 1.753170076 0.063687 193 97 SH16095 16095 YDR059C_4_569765_569229_INTRON_48_137 5' exon 31.240241 140.257627 31.240241 110.017386 70.6288135 1.848981911 0.063684 202 11 SH9983 9983 RUF5-1 RUF5-1 721 743 26.144772 96.958183 61.5514775 1.789238482 0.063674 128 7 SH17141 17141 YHR010W_8_126513_127484_INTRON_32_592 intron 29.960429 137.070925 29.960429 108.110496 69.0354625 1.839072239 0.063671 2 41 SH10219 10219 RUF6 RUF6 941 958 24.141711 83.633923 53.887817 1.731490591 0.063623 135 95 SH4980 4980 snR10 5' 24.1558 83.735337 53.9455685 1.731955774 0.063591 174 52 SH13569 13569 MT COX1 Exon 6 24.719684 111.418368 24.719684 87.698684 56.209184 1.749807281 0.063582 212 72 SH2641 2641 Pro3 3' flank 24.347867 85.092006 54.7199365 1.738145585 0.063509 10 39 SH1665 1665 Leu5 3' flank 23.352108 78.245581 50.7988445 1.705853834 0.063479 164 21 SH4770 4770 snR5 snR5 21 35 35.896947 116.378875 76.137911 1.881600957 0.063464 13 5 SH8398 8398 snoRNA cluster 5 snR190 25.038011 113.975255 25.038011 89.937244 57.4876275 1.759574386 0.063461 34 84 SH8828 8828 LSR1 / U2 RNA U2 781 802 23.504545 79.251499 51.378022 1.71077738 0.063461 190 46 SH6859 6859 snR56 5' 23.993062 82.613997 53.3035295 1.726755967 0.063434 134 22 SH21450 21450 copy of SH252 28.348874 104.99291 66.670892 1.823936266 0.063424 117 38 SH1780 1780 Leu8 5' flank 40.758106 123.107602 81.932854 1.913458083 0.063413 112 19 SH17517 17517 YJL136C_10_156971_156248_INTRON_25_484 intron 24.949852 113.276411 24.949852 89.326559 57.1382055 1.756926597 0.063363 52 77 SH9727 9727 RUF4 RUF4 411 427 24.91734 89.098826 57.008083 1.755936437 0.06336 92 22 SH1275 1275 Ile2 tRNA-intron 71 86 28.379213 105.056409 66.717811 1.824241789 0.063356 58 34 SH18442 18442 YMR142C_13_551206_550205_INTRON_5_406 intron 25.314821 116.222524 25.314821 91.907703 58.611262 1.767981073 0.063344 46 2 SH20564 20564 YHR001W-A spliced 25.749525 95.029362 60.3894435 1.780961028 0.063318 61 51 SH14322 14322 MT VAR1 includes 5’ processing site VAR1 24.968701 113.433253 24.968701 89.464552 57.2166265 1.757522248 0.063301 162 75 SH2171 2171 Met2 5' flank - tRNA3 3 30.682307 109.257365 69.969836 1.844910856 0.063297 148 47 SH4444 4444 telomerase RNA telomerase 1256 1270 339.860413 530.361256 435.1108345 2.638599898 0.063278 206 27 SH10676 10676 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 266 283 53.183729 140.183488 96.6836085 1.985352851 0.063264 69 40 SH7088 7088 snR63 5' 23.156188 77.01288 50.084534 1.699703637 0.063259 112 24 SH6990 6990 snR60 snR60 31 48 48.792135 134.177495 91.484815 1.961349014 0.063256 120 81 SH10778 10778 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 776 793 27.884648 104.087826 65.986237 1.819453363 0.063199 198 13 SH16975 16975 YGR034W_7_555923_556666_INTRON_20_496 intron 26.236992 122.663969 26.236992 97.426977 61.8319845 1.791213185 0.063199 172 94 SH1693 1693 Leu6 tRNA 31 43 43.333419 126.705106 85.0192625 1.929517333 0.063147 3 5 SH11535 11535 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4561 4579 2805.515379 3416.9743 3111.24484 3.492934189 0.063142 12 28 SH15743 15743 YCR028C-A_3_173432_172942_INTRON_243_325 intron/exon 25.309687 116.200365 25.309687 91.890678 58.6001825 1.767898969 0.063137 81 17 SH17210 17210 YHR039C-A_8_187670_187164_INTRON_4_165 intron 25.971434 121.158423 25.971434 96.186989 61.0792115 1.785893422 0.063137 56 39 SH16815 16815 YGL178W_7_167356_170575_INTRON_4_643 intron 29.4877 135.719466 29.4877 107.231766 68.359733 1.834800358 0.063118 6 104 SH7334 7334 snR66 3' 24.956962 89.400544 57.178753 1.75723468 0.0631 91 2 SH4225 4225 telomerase RNA telomerase 161 177 73.030629 167.375461 120.203045 2.079915469 0.063002 77 97 SH6789 6789 snR50 3' 24.157505 83.799092 53.9782985 1.732219191 0.062999 13 18 SH19020 19020 YOR182C_15_678792_678190_INTRON_4_414 intron 1081.372257 2545.72308 1081.372257 1465.350823 1273.36154 3.104951729 0.062996 169 47 SH10871 10871 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1241 1254 23924.56947 22441.42333 23182.9964 4.365169568 0.062971 188 20 SH3430 3430 Trp1 5' flank 23.546829 79.584904 51.5658665 1.71236232 0.062917 132 18 SH13701 13701 MT tRNAGlu (and 5' processing site for COB) 5' 23.942971 105.257373 23.942971 82.314402 53.1286865 1.725329079 0.062875 151 38 SH11581 11581 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4791 4807 181.670167 316.470264 249.0702155 2.396321797 0.062773 19 13 SH10111 10111 RUF6 RUF6 401 417 25.658957 94.428722 60.0438395 1.778468455 0.062766 151 60 SH5670 5670 snR34 snR34 271 290 25.041027 90.023663 57.532345 1.759912076 0.062755 17 42 SH6032 6032 snR37 snR37 76 95 23.31874 78.089444 50.704092 1.70504301 0.062751 203 79 SH15162 15162 MT tRNA Val tRNA 25.888836 120.720838 25.888836 95.832002 60.860419 1.784334938 0.062718 134 7 SH981 981 Gly1 3' flank 33.595127 113.286458 73.4407925 1.865937355 0.062686 142 59 SH2718 2718 Pro5 5' flank 23.784169 81.235288 52.5097285 1.720239773 0.062648 53 56 SH18702 18702 YNL130C_14_381156_379555_INTRON_30_470 intron 23.577342 102.394196 23.577342 79.816854 51.697098 1.713466165 0.062633 131 55 SH19995 19995 YBR048W spliced 34.963972 115.169461 75.0667165 1.87544742 0.062633 159 90 SH21214 21214 YOR122C spliced 25.169602 90.947143 58.0583725 1.763864857 0.062592 160 5 SH20656 20656 YIL018W spliced 97.309853 201.247506 149.2786795 2.173997785 0.06255 41 41 SH8412 8412 snoRNA cluster 5 snR190 24.835041 112.432701 24.835041 88.59766 56.7163505 1.753708278 0.062537 59 72 SH9880 9880 RUF5-1 RUF5-1 206 220 69.176996 162.10542 115.641208 2.06311262 0.062532 180 40 SH8833 8833 LSR1 / U2 RNA U2 806 820 1692.610318 2189.249802 1940.93006 3.288009886 0.062531 37 29 SH2567 2567 Pro2 tRNA 71 83 957.602403 1315.062719 1136.332561 3.055505451 0.062524 39 23 SH952 952 Gly1 tRNA 11 28 27.35856 102.77866 65.06861 1.813371529 0.062474 145 61 SH21375 21375 Leu8_9 spliced 27.038336 101.261454 64.149895 1.80719595 0.062463 135 90 SH7524 7524 snR79 5' 22.740012 74.449302 48.594657 1.686588521 0.06246 40 6 SH15868 15868 YDL079C_4_314747_312950_INTRON_413_704 intron 24.902237 112.980466 24.902237 89.078229 56.990233 1.755800433 0.062427 172 18 SH4302 4302 telomerase RNA telomerase 546 565 23.890948 81.996226 52.943587 1.723813362 0.06238 119 82 SH21463 21463 copy of SH809 27.810914 103.986756 65.898835 1.818877737 0.062378 37 51 SH18545 18545 YMR230W_13_732413_733140_INTRON_53_462 intron 24.349922 108.557444 24.349922 85.207522 54.778722 1.738611896 0.062375 51 2 SH1575 1575 Leu4 tRNA-intron 46 62 25.85008 95.676679 60.7633795 1.78364192 0.062372 137 54 SH5888 5888 snR35 3' 149.437361 272.787152 211.1122565 2.324513448 0.062371 140 85 SH2620 2620 Pro3 tRNA-intron 51 67 148.823201 271.959957 210.391579 2.323028353 0.062358 97 10 SH12858 12858 MT COX1 COX1ai1 24.525476 109.982388 24.525476 86.456912 55.491194 1.74422407 0.062323 180 84 SH10621 10621 RUF8 3' 33.99424 113.860021 73.9271305 1.868803849 0.062312 86 35 SH10189 10189 RUF6 RUF6 791 808 46.747055 131.45884 89.1029475 1.949892071 0.062229 75 56 SH4612 4612 snR3 5' 23.55852 79.722541 51.6405305 1.712990695 0.062223 170 27 SH5120 5120 snR11 snR11 201 215 26.599737 99.209861 62.904799 1.798683779 0.062205 113 38 SH13547 13547 MT COX1 intronic 22.626841 95.391983 22.626841 73.765142 48.1959915 1.683010919 0.06216 92 29 SH9939 9939 RUF5-1 RUF5-1 501 517 25.899533 95.930829 60.915181 1.784725539 0.06207 31 23 SH2243 2243 Phe1 91-92 + 3' flank 91 110 23.907277 82.139779 53.023528 1.724468621 0.062026 85 48 SH19345 19345 YPL249C-A_16_76239_75699_INTRON_17_254 exon/intron 25.526492 118.073202 25.526492 93.54671 59.536601 1.774784037 0.062024 184 39 SH21912 21912 copy of SH19565 30.511705 109.084169 69.797937 1.843842586 0.062023 208 88 SH21462 21462 copy of SH808 30.740137 109.406995 70.073566 1.845554219 0.062005 165 88 SH5216 5216 snR30 5' 24.227826 84.385964 54.306895 1.734854973 0.061937 88 70 SH4745 4745 snR4 3' 26.92006 100.746697 63.8333785 1.805047831 0.061896 141 76 SH1359 1359 Ile3 3' flank 24.631962 87.242718 55.93734 1.74770181 0.061871 52 32 SH10137 10137 RUF6 RUF6 531 545 28.456251 105.291103 66.873677 1.825255203 0.061867 211 23 SH9777 9777 RUF4 RUF4 661 673 27.410719 103.078455 65.244587 1.814544486 0.06183 93 103 SH4918 4918 snR9 5' - 13 13 35.03203 115.307638 75.169834 1.876043591 0.061821 96 57 SH13755 13755 MT COB exon1/intron 39.390775 159.712296 39.390775 121.321521 80.356148 1.90501911 0.061819 75 57 SH17789 17789 YKL186C_11_93537_92746_INTRON_71_233 exon/intron 27.464048 129.792032 27.464048 103.327984 65.396016 1.815551291 0.061782 22 76 SH11253 11253 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3151 3168 352.092984 547.34517 449.719077 2.652941311 0.061778 160 76 SH16033 16033 YDL191W_4_117665_118518_INTRON_4_494 intron 28.784509 133.725128 28.784509 105.940619 67.362564 1.828418609 0.061768 41 48 SH8024 8024 snoRNA cluster 2 snR55 25.386018 116.953306 25.386018 92.567288 58.976653 1.770680122 0.061739 132 78 SH7329 7329 snR66 3' 25.240231 91.528869 58.38455 1.766297937 0.061732 168 51 SH10127 10127 RUF6 RUF6 481 497 24.441313 85.912233 55.176773 1.741756297 0.061731 210 38 SH15920 15920 YDL083C_4_307788_306925_INTRON_25_456 intron/exon 142.015796 403.822831 142.015796 262.807035 202.4114155 2.306235002 0.061726 173 38 SH21798 21798 copy of SH14863 27.168253 101.937921 64.553087 1.809917016 0.061698 98 69 SH3159 3159 Ser5 5' flank 24.697832 87.71705 56.207441 1.749793813 0.061688 57 89 SH9933 9933 RUF5-1 RUF5-1 471 490 23.627249 80.237732 51.9324905 1.71543915 0.061686 16 47 SH4429 4429 telomerase RNA telomerase 1181 1203 23.157889 77.148921 50.153405 1.700300423 0.061649 202 39 SH15156 15156 MT tRNA Val 5' 24.546781 110.217914 24.546781 86.671133 55.608957 1.74514475 0.061633 193 45 SH11418 11418 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3976 3989 50.682075 136.888764 93.7854195 1.972135325 0.061602 18 53 SH8033 8033 snoRNA cluster 2 snR55 41.108232 163.822138 41.108232 123.713906 82.411069 1.915985548 0.061575 192 85 SH6950 6950 snR58 3' 24.511035 86.421896 55.4664655 1.744030492 0.061573 15 51 SH7221 7221 snR64 3' 27.103141 101.639444 64.3712925 1.808692229 0.06157 157 29 SH2917 2917 Pro8 3' flank 22.993581 76.112321 49.552951 1.695069523 0.061569 194 42 SH14670 14670 MT 21S rRNA 21S rRNA4 24.132914 106.885711 24.132914 83.752797 53.9428555 1.731933932 0.061562 105 72 SH13010 13010 MT COX1 COX1ai2 65.688426 222.040708 65.688426 157.352282 111.520354 2.047354139 0.061558 89 44 SH11153 11153 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2651 2668 1325.783345 1760.81317 1543.298258 3.188449866 0.061532 171 99 SH797 797 Glu1 tRNA 1 17 3548.852244 4203.29141 3876.071827 3.588391816 0.061527 36 77 SH3618 3618 Val1 3' flank 23.385161 78.616103 51.000632 1.707575558 0.061476 27 42 SH13574 13574 MT COX1 Exon 6 27.192621 128.264438 27.192621 102.071817 64.632219 1.810449067 0.06147 138 55 SH18616 18616 YNL069C_14_494998_493953_INTRON_29_477 intron/exon 23.457281 101.552615 23.457281 79.095334 51.2763075 1.709916743 0.061463 11 50 SH13953 13953 MT COB Cytbi3 23.31241 100.463008 23.31241 78.150598 50.731504 1.705277738 0.06146 56 23 SH15246 15246 MT tRNA fMet tRNA 24.382411 108.901416 24.382411 85.519005 54.950708 1.739973292 0.06146 194 34 SH20379 20379 YFL034C-A spliced 71.125381 164.860515 117.992948 2.071856052 0.061456 27 70 SH12827 12827 MT COX1 COX1ai1 25.166149 115.196436 25.166149 91.030287 58.098218 1.764162812 0.06144 41 83 SH9395 9395 RUF1 3' 30.663469 109.329062 69.9962655 1.84507487 0.061439 136 35 SH9411 9411 RUF1 3' 23.962795 82.57719 53.2699925 1.726482636 0.061425 46 25 SH19405 19405 YPR098C_16_729525_728944_INTRON_48_143 5' exon 25.346745 116.663686 25.346745 92.316941 58.831843 1.769612454 0.061421 104 5 SH4757 4757 snR5 5' 24.792181 88.400939 56.59656 1.752790035 0.061403 89 49 SH16813 16813 YGL178W_7_167356_170575_INTRON_4_643 exon/intron 22.771241 96.495934 22.771241 74.724693 48.747967 1.687956508 0.0614 120 27 SH9934 9934 RUF5-1 RUF5-1 476 495 24.393044 85.600118 54.996581 1.740335691 0.061395 157 74 SH6335 6335 snR43 5' 28.879653 106.147685 67.513669 1.82939171 0.061394 38 37 SH12830 12830 MT COX1 COX1ai1 29.154514 134.838394 29.154514 106.68388 67.919197 1.831992543 0.061388 212 86 SH4137 4137 SRP RNA SRP RNA 576 588 26.40793 98.371145 62.3895375 1.795111766 0.061368 187 38 SH16629 16629 YFL039C_6_54695_53260_INTRON_11_318 intron 24.141428 106.971594 24.141428 83.830166 53.985797 1.732279517 0.06136 186 14 SH650 650 Gln2 tRNA 36 48 32.406743 111.74807 72.0774065 1.857799151 0.061355 66 95 SH10420 10420 RUF8 RUF8 26 47 25.406381 92.752111 59.079246 1.771434944 0.061327 157 15 SH21550 21550 copy of SH4563 53.153679 140.287539 96.720609 1.985519022 0.061296 200 15 SH21023 21023 YMR079W spliced 28.132016 104.684215 66.4081155 1.822221156 0.061281 22 15 SH17388 17388 YIL069C_9_232366_231550_INTRON_4_412 intron 25.020465 114.038435 25.020465 90.01797 57.5192175 1.759812969 0.061247 34 67 SH788 788 Glu1 5' flank 25.523842 93.603811 59.5638265 1.77498259 0.061231 185 95 SH13067 13067 MT COX1 intronic 24.510678 109.971034 24.510678 86.460356 55.485517 1.744179637 0.06112 25 36 SH14938 14938 MT tRNA Asn 3' 23.149869 99.28968 23.149869 77.139811 50.14484 1.70022625 0.06111 98 78 SH18831 18831 YNL302C_14_62942_61957_INTRON_21_571 intron 24.480259 109.727008 24.480259 86.246749 55.363504 1.743223569 0.061088 94 6 SH8276 8276 snoRNA cluster4 snR67/intergenic 26.440638 123.988689 26.440638 98.548051 62.4943445 1.795840717 0.061072 27 45 SH15642 15642 YBR186W_2_600511_602318_INTRON_1552_1664 3' exon 27.115939 127.856744 27.115939 101.740805 64.428372 1.809077158 0.06106 194 58 SH20258 20258 YDR397C spliced 26.007306 96.512405 61.2598555 1.787175968 0.061055 60 88 SH15196 15196 MT COX3 cox3 25.454942 117.581252 25.454942 93.12631 59.290626 1.772986036 0.061051 86 89 SH17092 17092 YHL001W_8_104270_105084_INTRON_130_527 intron 23.914937 105.191686 23.914937 82.276749 53.095843 1.72506052 0.061051 172 47 SH8838 8838 LSR1 / U2 RNA U2 831 848 43.384034 126.91031 85.147172 1.930170228 0.061042 158 31 SH4136 4136 SRP RNA SRP RNA 571 583 33.298481 112.97118 73.1348305 1.864124259 0.06102 113 13 SH214 214 Arg3 5' flank 25.217788 91.438767 58.3282775 1.765879151 0.060992 29 17 SH1309 1309 Ile3 5' flank 23.631998 80.332047 51.9820225 1.715853173 0.060951 66 12 SH20020 20020 YBR089C-A spliced 27.930226 104.303419 66.1168225 1.820311974 0.060937 169 49 SH3945 3945 RNase MRP RNaseMRP 141 160 24.490866 86.338744 55.414805 1.743625809 0.060905 156 16 SH17829 17829 YKR094C_11_618384_617630_INTRON_9_376 5' exon 69.327951 230.789274 69.327951 162.461323 115.894637 2.06406334 0.060863 209 38 SH2725 2725 Pro5 tRNA 6 22 216.44683 363.922153 290.1844915 2.462674198 0.060837 102 94 SH5430 5430 snR31 216-225+3' 216 24.954299 89.593591 57.273945 1.757957098 0.060794 55 74 SH1903 1903 Lys1 5' flank 29.296646 106.994519 68.1455825 1.833437708 0.060781 6 99 SH4476 4476 U3b (snR17b) 5' 24.485335 86.315545 55.40044 1.743513214 0.060726 48 90 SH15160 15160 MT tRNA Val 5' 24.453854 109.546343 24.453854 86.092489 55.2731715 1.742514385 0.060717 19 55 SH7202 7202 snR64 snR64 76 90 35.526709 116.038948 75.7828285 1.879570811 0.060711 81 91 SH17294 17294 YHR141C_8_382752_381991_INTRON_5_445 intron 25.861424 120.715996 25.861424 95.854572 60.857998 1.784317662 0.060711 106 56 SH19751 19751 Negative Control 27.572639 103.604326 65.5884825 1.816827583 0.060702 12 58 SH2032 2032 Lys3 3' flank 22.60846 73.759692 48.184076 1.682903535 0.060694 177 103 SH14864 14864 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 24.47316 109.709112 24.47316 86.235952 55.354556 1.743153372 0.060648 70 72 SH15151 15151 MT tRNA Thr1 reverse complement 3' 23.945004 105.466268 23.945004 82.521264 53.233134 1.726182035 0.060639 77 101 SH5749 5749 snR35 5' 25.635481 94.466395 60.050938 1.778519796 0.060628 58 66 SH6565 6565 snR47 5' 59.003269 148.290129 103.646699 2.015555475 0.060602 183 30 SH13329 13329 MT COX1 COX1-ai5a 23.84346 104.663001 23.84346 81.819541 52.8315005 1.722892946 0.060602 115 102 SH6398 6398 snR43 3' 23.664683 80.586994 52.1258385 1.717053054 0.060589 189 94 SH4106 4106 SRP RNA SRP RNA 421 433 36.437119 117.262465 76.849792 1.885642696 0.060587 40 96 SH21045 21045 YMR142C spliced 36.106968 116.823505 76.4652365 1.883464036 0.060585 122 47 SH11304 11304 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3406 3423 257.112067 418.961167 338.036617 2.528963747 0.060582 112 70 SH6986 6986 snR60 snR60 11 28 186.539305 323.534013 255.036659 2.40660261 0.060571 19 68 SH19875 19875 Negative Control 26.763692 100.113172 63.438432 1.80235244 0.060552 19 3 SH13132 13132 MT COX1 COX1ai3 27.638196 130.382276 27.638196 103.74408 65.691138 1.817506785 0.060541 197 19 SH16805 16805 YGL137W_7_249872_252741_INTRON_19_218 intron 25.896512 120.928597 25.896512 96.032085 60.9642985 1.785075581 0.060537 185 85 SH10766 10766 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 716 734 28.625867 105.702297 67.164082 1.827137083 0.060476 73 33 SH20909 20909 YLR333C spliced 31.244996 110.196488 70.720742 1.849546809 0.060444 2 89 SH16105 16105 YDR064W_4_579453_580447_INTRON_22_560 5' exon 46.719885 177.262621 46.719885 131.542736 89.1313105 1.950030292 0.060442 107 51 SH13284 13284 MT COX1 Exon 5a 25.825572 120.533251 25.825572 95.707679 60.7666255 1.78366512 0.060431 21 42 SH3929 3929 RNase MRP RNaseMRP 61 78 23.494588 79.435252 51.46492 1.711511302 0.06043 135 8 SH18126 18126 YLR388W_12_898158_898821_INTRON_1_488 intron 27.822104 130.93991 27.822104 104.117806 65.969955 1.819346188 0.060408 60 7 SH3164 3164 Ser5 5' flank 23.338733 78.404792 50.8717625 1.706476784 0.060379 5 51 SH16752 16752 YGL076C_7_365994_364333_INTRON_565_1032 intron 24.876081 112.959969 24.876081 89.083888 56.9799845 1.755722327 0.060357 24 2 SH18940 18940 YOL121C_15_92849_92025_INTRON_21_410 3' exon 25.418096 117.359403 25.418096 92.941307 59.1797015 1.77217277 0.060222 2 27 SH1355 1355 Ile3 3' flank 25.942568 96.2743 61.108434 1.786101154 0.060189 43 87 SH8819 8819 LSR1 / U2 RNA U2 736 752 23.629094 80.377027 52.0030605 1.716028904 0.060179 22 73 SH2568 2568 Pro2 tRNA 76 88 65.39997 157.066706 111.233338 2.04623497 0.060174 143 60 SH2411 2411 Phe4 3' flank 22.784849 74.904954 48.8449015 1.688819238 0.060144 60 65 SH5546 5546 snR33 snR33 16 32 25.043392 90.28226 57.662826 1.760895923 0.06014 190 65 SH3350 3350 Thr3 3' flank 53.235627 140.483618 96.8596225 1.986142772 0.060134 105 92 SH12582 12582 MT_15S MT_15S 25.750713 120.102312 25.750713 95.351599 60.551156 1.782122439 0.060106 84 32 SH14615 14615 MT 21S rRNA Sce1 endonuc 24.134449 107.02671 24.134449 83.892261 54.013355 1.732501154 0.060095 64 104 SH20921 20921 YLR344W spliced 27.75811 104.0103 65.884205 1.81878131 0.060048 11 64 SH17761 17761 YKL157W_11_154993_158183_INTRON_282_664 intron 24.245795 107.926198 24.245795 84.680403 54.463099 1.736102349 0.060038 19 70 SH10565 10565 RUF8 RUF8 751 763 44.589655 128.617497 86.603576 1.937535825 0.060013 136 31 SH5463 5463 snR32 5' 22.294696 71.86694 47.080818 1.672844 0.059987 123 87 SH12357 12357 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.586692 124.908637 26.586692 99.321945 62.9543185 1.799025527 0.059976 40 42 SH18951 18951 YOL127W_15_80347_81189_INTRON_14_427 intron 26.743148 125.805531 26.743148 100.062383 63.4027655 1.802108201 0.059962 55 36 SH20896 20896 YLR287C-A spliced 25.772218 95.493601 60.6329095 1.782708409 0.059954 9 96 SH1195 1195 Ile1 5' flank 25.519424 93.696346 59.607885 1.775303713 0.059937 126 23 SH2018 2018 Lys3 tRNA-exon/intron 36 53 24.789321 88.514797 56.652059 1.753215699 0.059928 199 39 SH4723 4723 snR4 snR4 151 168 24.401165 85.789841 55.095503 1.741116152 0.059921 193 98 SH5796 5796 snR35 snR35 166 188 23.287286 78.111643 50.6994645 1.705003372 0.059912 195 77 SH5590 5590 snR33 3' 23.428993 79.031781 51.230387 1.709527637 0.059903 195 9 SH3589 3589 Val1 5' flank 24.222083 84.525355 54.373719 1.735389038 0.059902 42 39 SH20325 20325 YER056C-A spliced 40.835291 123.434688 82.1349895 1.914528206 0.059884 187 79 SH15312 15312 YAL003W_1_142172_143158_INTRON_81_446 exon/intron 25.947731 121.270896 25.947731 96.323165 61.135448 1.786293099 0.059863 79 46 SH2089 2089 Lys4 3' flank 23.554197 79.891442 51.7228195 1.713682191 0.059846 91 36 SH14994 14994 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 24.366547 108.918041 24.366547 85.551494 54.9590205 1.740038984 0.059841 66 84 SH1044 1044 Gly3 5' flank 24.117473 83.796028 53.9567505 1.732045787 0.059834 99 3 SH21494 21494 copy of SH2287 26.858169 100.619857 63.739013 1.804405334 0.059794 20 61 SH3576 3576 Tyr2 3' flank 24.119482 83.813784 53.966633 1.732125323 0.059792 153 55 SH765 765 Gln4 3' flank 22.754362 74.74134 48.747851 1.687955475 0.059775 203 39 SH10687 10687 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 321 338 31.316954 110.334315 70.8256345 1.850190474 0.059738 42 15 SH66 66 Ala2 5' flank 26.251975 97.763086 62.0075305 1.792444436 0.059729 118 77 SH14891 14891 MT tRNA Ile 5' 24.172541 107.367198 24.172541 84.194657 54.183599 1.733867848 0.059699 161 13 SH8928 8928 snR17a / U3a 5' 24.598719 87.2077 55.9032095 1.747436742 0.059682 145 76 SH21380 21380 Lys3_4 spliced 24.989005 89.941442 57.4652235 1.7594051 0.059672 170 39 SH9299 9299 RUF1 RUF1 71 89 24.856193 89.008529 56.932361 1.755359194 0.059654 180 72 SH9731 9731 RUF4 RUF4 431 443 27.920719 104.356909 66.138814 1.820456403 0.05963 171 49 SH747 747 Gln4 tRNA 6 23 86.858615 186.94872 136.9036675 2.136415083 0.059626 52 90 SH8535 8535 snR19 / U1 RNA U1 171 188 25.813542 95.713149 60.7633455 1.783641677 0.059608 58 94 SH5779 5779 snR35 snR35 81 100 24.751739 88.282597 56.517168 1.752180392 0.05959 7 28 SH6791 6791 snR50 3' 23.884589 82.195206 53.0398975 1.724602676 0.059549 68 30 SH20338 20338 YER074W-A spliced 74.539026 169.81245 122.175738 2.086984971 0.059523 152 40 SH9116 9116 snR14 / U4 RNA 3' 23.107972 76.996691 50.0523315 1.699424312 0.059519 116 55 SH18437 18437 YMR142C_13_551206_550205_INTRON_5_406 intron 25.964915 121.395289 25.964915 96.430374 61.1976445 1.786734706 0.059511 83 68 SH11258 11258 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3176 3189 6134.873606 6800.80833 6467.840968 3.810759333 0.059495 94 39 SH12406 12406 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.943997 137.263479 29.943997 108.319482 69.1317395 1.839677485 0.059483 212 36 SH17816 17816 YKR057W_11_551293_551878_INTRON_25_346 intron 25.992572 121.555053 25.992572 96.562481 61.2775265 1.787301226 0.059482 140 82 SH19285 19285 YPL143W_16_282121_282969_INTRON_20_544 3' exon 28.462473 132.902889 28.462473 105.440416 66.9514445 1.825759951 0.059417 28 44 SH15077 15077 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.784249 96.743429 22.784249 74.95918 48.8717145 1.689057575 0.059377 3 23 SH12033 12033 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7051 7074 23.884448 82.210029 53.0472385 1.724662781 0.059365 93 28 SH12135 12135 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7561 7574 26.871451 100.717387 63.794419 1.804782687 0.059356 41 65 SH9446 9446 RUF2 RUF2 71 83 25.53248 93.853467 59.6929735 1.775923213 0.059281 104 16 SH17854 17854 YKR095W-A_11_625432_625839_INTRON_39_113 intron 47.720315 179.717425 47.720315 132.99711 90.3587125 1.955970034 0.059272 106 41 SH4034 4034 SRP RNA SRP RNA 61 80 23.930283 82.536901 53.233592 1.726185772 0.059272 192 77 SH5098 5098 snR11 snR11 91 112 23.497822 79.558046 51.527934 1.71204273 0.059219 16 58 SH11680 11680 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5286 5299 20249.31923 19425.87332 19837.59627 4.297489047 0.059205 47 53 SH12224 12224 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 22.793969 96.827237 22.793969 75.033268 48.9136185 1.689429792 0.059205 154 101 SH20520 20520 YGR034W spliced 25.06394 90.515122 57.789531 1.76184917 0.059196 134 88 SH19960 19960 YBL059C-A spliced 24.979747 89.923556 57.4516515 1.759302517 0.059158 24 81 SH2846 2846 Pro7 tRNA-exon/intron 36 48 27.021236 101.443582 64.232409 1.80775421 0.059153 25 98 SH1542 1542 Leu3 3' flank 24.48234 86.439977 55.4611585 1.743988937 0.059113 76 23 SH16811 16811 YGL178W_7_167356_170575_INTRON_4_643 5' exon 25.677453 119.595533 25.677453 94.91808 60.2977665 1.780301226 0.059104 46 64 SH16366 16366 YEL012W_5_131772_132551_INTRON_6_128 intron/exon 24.697106 111.650027 24.697106 87.952921 56.3250135 1.750701304 0.059015 132 75 SH10093 10093 RUF6 RUF6 311 330 24.697386 87.955772 56.326579 1.750713375 0.059005 204 55 SH4998 4998 snR10 snR10 21 37 30.870266 109.749388 70.309827 1.847016029 0.058994 141 11 SH7942 7942 snoRNA cluster1 3' 24.454812 109.7131 24.454812 86.258288 55.35655 1.743169016 0.058954 28 99 SH1160 1160 His1 tRNA 21 37 47.136957 132.221145 89.679051 1.952691004 0.058922 118 22 SH17301 17301 YHR203C_8_505526_504472_INTRON_15_283 5' exon 53.567754 193.589562 53.567754 141.021808 97.294781 1.988089545 0.058911 174 63 SH460 460 Asp1 3' flank 24.104763 83.78913 53.9469465 1.731966868 0.058896 40 60 SH2496 2496 Pro1 5' flank 27.60961 103.780445 65.6950275 1.817532499 0.058844 45 59 SH17681 17681 YKL006W_11_431544_432358_INTRON_130_527 intron 31.538234 141.229918 31.538234 110.691684 71.114959 1.851960964 0.058803 162 93 SH13304 13304 MT COX1 COX1-ai5a 24.380451 109.12699 24.380451 85.746539 55.063495 1.740863774 0.058765 134 8 SH3674 3674 Val2 3' flank 25.765704 95.553637 60.6596705 1.782900047 0.058745 136 48 SH11238 11238 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3076 3091 156.585914 283.12833 219.857122 2.342140539 0.058636 5 33 SH13932 13932 MT COB Cytbi3 25.851035 120.814209 25.851035 95.963174 60.9071045 1.784667954 0.058621 59 59 SH17600 17600 YJL205C-A_10_50443_50139_INTRON_33_175 5' exon 25.930909 121.269444 25.930909 96.338535 61.134722 1.786287942 0.058615 9 3 SH295 295 Arg4 71-72 + 3' flank 71 3' flank 22.536139 73.465596 48.0008675 1.681249086 0.058585 151 11 SH3008 3008 Ser2 tRNA 1 13 260.790563 424.478131 342.634347 2.534830896 0.058577 32 52 SH3781 3781 Val4 3' flank 24.607061 87.365061 55.986061 1.748079913 0.058572 140 56 SH15175 15175 MT COX3 5' 22.579367 95.317775 22.579367 73.738408 48.1588875 1.682676446 0.058541 168 13 SH1023 1023 Gly2 3' flank 22.189007 71.34629 46.7676485 1.669945534 0.05834 13 14 SH12503 12503 MT_tRNA Pro 3' 23.415676 101.486659 23.415676 79.070983 51.2433295 1.70963734 0.058332 164 82 SH14317 14317 MT VAR1 includes 5’ processing site VAR1 24.694331 111.692482 24.694331 87.998151 56.346241 1.750864948 0.058299 204 9 SH14712 14712 MT tRNA cys; tRNA his 5' 23.976113 105.923004 23.976113 82.946891 53.461502 1.728041156 0.058227 84 18 SH14530 14530 MT 21S rRNA 21S rRNA3 23.844697 104.877516 23.844697 82.032819 52.938758 1.723773748 0.058214 152 53 SH8528 8528 snR19 / U1 RNA U1 136 153 26.81865 100.558655 63.6886525 1.80406206 0.058198 24 51 SH10573 10573 RUF8 RUF8 791 805 26.950216 101.183869 64.0670425 1.806634676 0.058181 11 51 SH17547 17547 YJL177W_10_90783_91654_INTRON_310_626 intron 23.275371 100.44828 23.275371 78.172909 50.72414 1.705214693 0.058166 85 54 SH16595 16595 YFL034C-A_6_64931_64242_INTRON_13_333 intron 26.069896 122.096505 26.069896 97.026609 61.5482525 1.789215727 0.058155 86 100 SH7217 7217 snR64 3' 25.248265 91.923066 58.5856655 1.767791368 0.058151 31 42 SH1043 1043 Gly3 5' flank 24.529743 86.865472 55.6976075 1.74583654 0.058149 204 64 SH4739 4739 snR4 3' 28.281812 105.155792 66.718802 1.82424824 0.058132 205 37 SH20552 20552 YGR225W spliced 25.583373 94.335726 59.9595495 1.777858361 0.05809 179 31 SH19523 19523 ACT1 25.511937 93.822293 59.667115 1.77573504 0.058067 209 12 SH6641 6641 snR48 snR48 31 47 25.330675 92.520626 58.9256505 1.770304386 0.058061 109 9 SH7712 7712 snoRNA cluster1 snR77 42.394497 167.132889 42.394497 125.738392 84.0664445 1.92462268 0.058036 7 53 SH1170 1170 His1 71-72 + 3' flank 71 23.467683 79.450822 51.4592525 1.711463473 0.058032 75 23 SH7351 7351 snR68 5' 23.53194 79.891084 51.711512 1.713587236 0.058026 147 26 SH11474 11474 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4256 4273 417.471354 635.905389 526.6883715 2.72155373 0.058024 159 77 SH4267 4267 telomerase RNA telomerase 371 388 22.683025 74.425616 48.5543205 1.686227881 0.058023 136 73 SH14544 14544 MT 21S rRNA 21S rRNA3 883.653812 2110.613877 883.653812 1227.960065 1055.806939 3.023584512 0.058006 94 41 SH16469 16469 YER102W_5_362729_363698_INTRON_1_360 5' exon 139.252026 397.893721 139.252026 259.641695 199.4468605 2.299827204 0.057955 31 101 SH7594 7594 snR189 snR189 41 57 28.505306 105.60718 67.056243 1.826439217 0.057945 53 5 SH6887 6887 snR56 snR56 66 85 23.435546 79.239799 51.3376725 1.710436175 0.05793 76 75 SH11494 11494 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4356 4373 378.954834 584.771242 481.863038 2.682923614 0.057904 150 3 SH16068 16068 YDR005C_4_458099_456832_INTRON_7_86 intron 24.851198 112.986382 24.851198 89.135184 56.993191 1.755822973 0.057884 21 28 SH16323 16323 YDR471W_4_1401759_1402553_INTRON_32_415 intron 28.323658 132.579493 28.323658 105.255835 66.7897465 1.824709795 0.057821 197 15 SH3723 3723 Val3 3' flank 23.94219 82.74719 53.34469 1.727091196 0.057799 120 63 SH5352 5352 snR30 3' 26.786097 100.436044 63.6110705 1.803532704 0.057796 66 37 SH1985 1985 Lys2 3' flank 24.638353 87.652937 56.145645 1.749316075 0.057794 166 25 SH18374 18374 YMR079W_13_424988_426058_INTRON_10_165 3' exon 24.277794 108.38478 24.277794 85.106986 54.69239 1.737926902 0.05778 166 54 SH10476 10476 RUF8 RUF8 306 327 22.379135 72.550095 47.464615 1.676369963 0.057771 38 81 SH21346 21346 YPR132W spliced 29.503718 107.568286 68.536002 1.835918767 0.057759 210 15 SH17945 17945 YLR128W_12_398531_399434_INTRON_4_97 intron 24.325266 108.770987 24.325266 85.445721 54.8854935 1.739457573 0.057752 17 80 SH1701 1701 Leu6 tRNA 71 83 28.457127 105.524438 66.9907825 1.826015051 0.057728 115 73 SH21774 21774 copy of SH14038 24.432319 86.210183 55.321251 1.742891992 0.057711 57 34 SH3734 3734 Val3 3' flank 23.522866 79.857615 51.6902405 1.713408553 0.057682 34 3 SH5433 5433 snR31 3' 24.580218 87.26036 55.920289 1.747569407 0.057656 112 57 SH11501 11501 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4391 4406 26.696484 100.023869 63.3601765 1.801816378 0.057639 145 38 SH21828 21828 copy of SH16123 31.446114 110.62779 71.036952 1.851484319 0.057607 67 57 SH19628 19628 RNA14 2.2 26.741505 100.243791 63.492648 1.80272344 0.057554 202 46 SH13330 13330 MT COX1 COX1-ai5a 24.475784 110.013186 24.475784 86.537402 55.506593 1.744344571 0.05752 193 23 SH9666 9666 RUF4 RUF4 106 121 25.940646 96.468093 61.2043695 1.786782428 0.057507 58 63 SH4168 4168 SRP RNA 3' 25.375335 92.898818 59.1370765 1.771859851 0.05745 125 20 SH3509 3509 Tyr1 86-89 + 3' flank 86 22.820271 75.335076 49.0776735 1.690883967 0.057411 188 88 SH16732 16732 YGL076C_7_365994_364333_INTRON_565_1032 intron 24.767218 112.358642 24.767218 88.591424 56.679321 1.753424639 0.05738 18 104 SH5115 5115 snR11 snR11 176 196 24.341354 85.596111 54.9687325 1.740115723 0.057347 131 64 SH16183 16183 YDR367W_4_1212837_1213603_INTRON_31_131 exon/intron 24.682547 111.68873 24.682547 88.006183 56.344365 1.750850489 0.057298 149 70 SH9886 9886 RUF5-1 RUF5-1 236 248 30.986045 110.00266 70.4943525 1.848154326 0.057285 152 58 SH8891 8891 LSR1 / U2 RNA U2 1096 1108 33.413429 113.332955 73.373192 1.865537413 0.057281 42 49 SH7377 7377 snR68 snR68 106 123 32.673243 112.331565 72.502404 1.860352407 0.057275 181 14 SH6240 6240 snR42 5' 25.386142 92.994621 59.1903815 1.772251139 0.057259 204 73 SH10170 10170 RUF6 RUF6 696 708 26.205293 97.734654 61.9699735 1.79218131 0.057233 203 2 SH3645 3645 Val2 5' flank 23.969854 82.989916 53.479885 1.728190465 0.057228 32 49 SH7228 7228 snR65 5' 94.537376 197.962418 146.249897 2.165095569 0.05722 99 80 SH7916 7916 snoRNA cluster1 intergenic/snR72 65.975212 223.108726 65.975212 158.133514 112.054363 2.049428771 0.057186 149 6 SH18562 18562 YMR292W_13_854795_855293_INTRON_23_104 intron/exon 24.972414 114.027505 24.972414 90.055091 57.5137525 1.759771704 0.057172 82 13 SH4774 4774 snR5 snR5 41 53 72.283525 166.869052 119.5762885 2.077645069 0.057162 114 4 SH18533 18533 YMR230W_13_732413_733140_INTRON_53_462 exon/intron 23.536443 102.533406 23.536443 79.996963 51.766703 1.714050506 0.057129 73 56 SH11260 11260 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3186 3201 74.574734 170.091992 122.333363 2.087544915 0.057104 211 41 SH21016 21016 YMR033W spliced 24.405094 86.073984 55.239539 1.742250046 0.057071 68 85 SH3710 3710 Val3 tRNA 31 45 40.360099 122.958032 81.6590655 1.912004406 0.057018 198 97 SH7501 7501 snR71 3' 25.078748 90.82459 57.951669 1.763065948 0.056997 171 64 SH21060 21060 YMR194W spliced 32.180239 111.676934 71.9285865 1.856901526 0.056941 116 54 SH9042 9042 snR17a / U3a 3' 24.107865 83.982715 54.04529 1.732757852 0.056938 167 79 SH1835 1835 Leu9 5' flank 26.676497 99.985853 63.331175 1.801617546 0.056917 181 44 SH9261 9261 snR6 / U6 RNA 3' 23.33843 78.677955 51.0081925 1.707639934 0.056908 128 87 SH15200 15200 MT COX3 cox3 24.376846 109.265818 24.376846 85.888972 55.132909 1.741410908 0.056894 169 58 SH20640 20640 YHR141C spliced 28.505747 105.66868 67.0872135 1.826639754 0.056864 202 20 SH10355 10355 RUF7 RUF7 386 400 35.920397 116.789951 76.355174 1.882838471 0.056809 148 78 SH9680 9680 RUF4 RUF4 176 197 23.163444 77.565276 50.36436 1.70212332 0.056769 201 54 SH6405 6405 snR43 3' 26.466393 99.003995 62.735194 1.797511245 0.056757 97 101 SH4569 4569 U3b (snR17b) U3b 401 417 27.217435 102.568395 64.892915 1.812197283 0.056753 89 50 SH7846 7846 snoRNA cluster1 snR74 35.820783 151.482995 35.820783 116.662212 76.2414975 1.882191418 0.056707 15 101 SH16535 16535 YER131W_5_423587_424307_INTRON_1_361 intron 25.45519 118.001937 25.45519 93.546747 59.5009685 1.774524035 0.056679 120 43 SH21319 21319 YPL249C-A spliced 27.290691 102.927048 65.1088695 1.813640155 0.056634 9 9 SH982 982 Gly2 5' flank 24.895819 89.56405 57.2299345 1.757623249 0.056633 200 20 SH1709 1709 Leu6 3' flank 34.277384 114.567995 74.4226895 1.871705361 0.056631 198 39 SH18729 18729 YNL147W_14_350937_351380_INTRON_19_138 intron 24.33585 108.961605 24.33585 85.625755 54.9808025 1.740211075 0.05658 158 40 SH17892 17892 YLR048W_12_242233_243350_INTRON_91_449 intron 26.674794 125.680203 26.674794 100.005409 63.3401015 1.801678755 0.056565 162 10 SH3807 3807 RNaseP RNaseP 1 17 43.579046 127.467835 85.5234405 1.932085164 0.056556 136 76 SH9873 9873 RUF5-1 RUF5-1 171 187 23.849873 82.213499 53.031686 1.724535435 0.05653 44 48 SH4793 4793 snR5 snR5 136 158 22.549371 73.702875 48.126123 1.682380877 0.0565 27 71 SH10104 10104 RUF6 RUF6 366 385 23.089466 77.115149 50.1023075 1.699857728 0.056478 128 91 SH1063 1063 Gly3 tRNA 51 63 8452.641461 9027.850725 8740.246093 3.941523661 0.056464 36 103 SH7087 7087 snR63 5' 24.13053 84.185043 54.1577865 1.733660906 0.056451 81 20 SH9569 9569 RUF3 RUF3 231 250 55.202526 143.443841 99.3231835 1.997050631 0.056424 206 65 SH20132 20132 YDL083C spliced 34.607405 115.033359 74.820382 1.874019921 0.056417 56 55 SH8899 8899 LSR1 / U2 RNA U2 1136 1152 24.941022 89.905145 57.4230835 1.759086509 0.056393 175 63 SH3564 3564 Tyr2 3' flank 26.136482 97.476267 61.8063745 1.791033269 0.056371 63 49 SH19354 19354 YPL249C-A_16_76239_75699_INTRON_17_254 intron 25.072333 114.910383 25.072333 90.83805 57.9551915 1.763092345 0.056364 124 40 SH17595 17595 YJL191W_10_73786_74610_INTRON_11_418 intron 24.390288 109.425269 24.390288 86.034981 55.2126345 1.74203847 0.056334 138 27 SH6929 6929 snR58 snR58 6 25 48.247192 133.918806 91.082999 1.959437322 0.056328 91 50 SH7359 7359 snR68 snR68 16 34 23.916342 82.695327 53.3058345 1.726774747 0.056314 204 66 SH18515 18515 YMR201C_13_667043_665844_INTRON_28_111 intron 25.710957 120.14775 25.710957 95.436793 60.573875 1.782285357 0.056284 58 101 SH2970 2970 Ser1 81-83 + 3' flank 81 23.078532 77.067088 50.07281 1.699601964 0.056199 12 63 SH3508 3508 Tyr1 81-89 + 3' flank 81 24.313747 85.503523 54.908635 1.739640648 0.056192 197 95 SH5943 5943 snR36 snR36 171 186 33.110898 112.983259 73.0470785 1.863602851 0.056182 70 52 SH16476 16476 YER102W_5_362729_363698_INTRON_1_360 intron 27.332735 129.497066 27.332735 103.164331 65.248533 1.814570752 0.056179 83 51 SH15402 15402 YBL050W_2_125087_126081_INTRON_31_146 intron 25.65183 119.670654 25.65183 95.018824 60.335327 1.780571671 0.056163 127 82 SH18717 18717 YNL130C_14_381156_379555_INTRON_30_470 intron 24.347861 109.098426 24.347861 85.750565 55.049213 1.740751115 0.05614 195 48 SH12595 12595 MT_15S MT_15S 24.185171 107.784522 24.185171 84.599351 54.392261 1.735537112 0.056123 178 12 SH14371 14371 MT ORF9 and ORF10 (hypothetical) ORF10 25.184423 115.843466 25.184423 91.659043 58.421733 1.766574436 0.056117 19 46 SH13948 13948 MT COB Cytbi3 23.324138 100.975963 23.324138 78.651825 50.9879815 1.70746782 0.056077 11 97 SH10633 10633 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 51 68 26.608375 99.729094 63.1687345 1.800502176 0.056075 8 8 SH12369 12369 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.774205 112.535602 24.774205 88.761397 56.767801 1.754102071 0.056051 205 62 SH11310 11310 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2/25S 3436 3454 26.33889 98.456719 62.3978045 1.795169309 0.056043 107 75 SH4695 4695 snR4 snR4 11 25 1709.889134 2218.537912 1964.213523 3.293188697 0.056026 183 101 SH2206 2206 Phe1 5' flank 26.636103 99.864776 63.2504395 1.801063548 0.05602 30 103 SH16565 16565 YER133W_5_432491_433954_INTRON_178_702 intron 24.3657 109.25435 24.3657 85.88865 55.127175 1.741365738 0.056015 59 102 SH7110 7110 snR63 snR63 56 75 25.643794 94.975424 60.309609 1.780386513 0.05601 157 63 SH21008 21008 YML124C spliced 28.855579 106.405313 67.630446 1.830142251 0.055992 64 76 SH11382 11382 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3796 3813 41437.49703 36553.34589 38995.42146 4.591013619 0.05599 30 29 SH2815 2815 Pro6 3' flank 24.743484 88.551953 56.6477185 1.753182423 0.055983 142 35 SH16252 16252 YDR397C_4_1266887_1266355_INTRON_38_129 intron 27.176251 128.613916 27.176251 102.437665 64.806958 1.811621636 0.05594 144 4 SH17748 17748 YKL157W_11_154993_158183_INTRON_282_664 intron 23.949237 105.907759 23.949237 82.958522 53.4538795 1.72797923 0.055929 81 80 SH16198 16198 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 24.099229 107.110931 24.099229 84.011702 54.0554655 1.732839612 0.055917 113 69 SH2821 2821 Pro7 5' flank 24.296575 85.40638 54.8514775 1.73918833 0.055915 176 8 SH17262 17262 YHR101C_8_315970_314876_INTRON_111_197 intron/exon 25.324132 117.004562 25.324132 92.68043 59.002281 1.770868802 0.055885 98 24 SH6371 6371 snR43 snR43 96 113 24.974361 90.188786 57.5815735 1.760283528 0.055875 195 19 SH15840 15840 YDL075W_4_322225_322987_INTRON_58_478 intron 157.617739 441.636476 157.617739 285.018737 221.318238 2.345017204 0.055852 114 5 SH4405 4405 telomerase RNA telomerase 1061 1076 140.315904 261.406511 200.8612075 2.302896069 0.055842 198 54 SH14817 14817 "MT tRNAs (Lys, Arg1, Gly)" intergenic 268.307627 702.759449 268.307627 435.451822 351.8797245 2.546394243 0.055842 10 25 SH8897 8897 LSR1 / U2 RNA U2 1126 1142 23.637837 80.803261 52.220549 1.717841433 0.055837 31 31 SH5822 5822 snR35 snR35 296 315 24.945216 89.98629 57.465753 1.759409102 0.055835 29 41 SH7796 7796 snoRNA cluster1 snR75 75.022574 244.861524 75.022574 170.83895 122.930762 2.089660574 0.055819 202 5 SH15620 15620 YBR181C_2_592732_591670_INTRON_7_358 intron 26.273516 123.438812 26.273516 98.165296 62.219406 1.793925861 0.055818 118 2 SH19011 19011 YOR182C_15_678792_678190_INTRON_4_414 intron 28.123896 132.097068 28.123896 104.973172 66.548534 1.823138493 0.055799 37 28 SH9521 9521 RUF3 5' - 8 -9 8 27.54183 103.813203 65.6775165 1.817416722 0.055788 62 100 SH10410 10410 RUF8 5' 26.076643 97.239481 61.658062 1.78998987 0.055779 78 86 SH18338 18338 YML124C_13_23684_22049_INTRON_26_323 intron 25.283298 116.681156 25.283298 92.397858 58.840578 1.76967693 0.055778 14 77 SH1028 1028 Gly2 3' flank 24.853994 89.349921 57.1019575 1.756650996 0.055753 92 104 SH8801 8801 LSR1 / U2 RNA U2 646 658 25.719751 95.553851 60.636801 1.782736281 0.055742 100 70 SH20447 20447 YGL103W spliced 28.26177 105.249857 66.7558135 1.824489093 0.055738 43 13 SH3028 3028 Ser2 3' flank 24.262077 85.178922 54.7204995 1.738150053 0.055723 126 69 SH1081 1081 Gly3 3' flank 164.464535 294.347851 229.406193 2.360605138 0.055705 164 83 SH17359 17359 YIL052C_9_257061_256224_INTRON_38_509 intron 26.734634 126.093191 26.734634 100.358557 63.5465955 1.803092288 0.055682 57 22 SH20775 20775 YKL006C-A spliced 28.393734 105.515292 66.954513 1.825779856 0.055658 199 16 SH12774 12774 MT COX1 COX1ai1 25.964021 121.68262 25.964021 96.718599 61.34131 1.787753047 0.055652 16 78 SH4065 4065 SRP RNA SRP RNA 216 237 24.590873 87.522297 56.056585 1.748626637 0.055562 149 71 SH104 104 Ala2 3' flank 28.947889 106.613037 67.780463 1.831104531 0.055517 109 13 SH19668 19668 SIR1 2.4 23.765551 81.715047 52.740299 1.722142588 0.055509 16 63 SH21046 21046 YMR142C spliced 26.478221 99.157224 62.8177225 1.798082187 0.055506 55 7 SH4340 4340 telomerase RNA telomerase 736 755 23.39345 79.1534 51.273425 1.709892329 0.055504 58 11 SH13662 13662 MT ATP6 ATP6 23.246392 100.443871 23.246392 78.197479 50.7219355 1.705195817 0.055494 120 99 SH1958 1958 Lys2 5' flank - tRNA9 9 25.648933 95.063211 60.356072 1.780720968 0.055492 182 43 SH20881 20881 YLR211C spliced 23.515187 79.990385 51.752786 1.713933734 0.055464 75 66 SH151 151 Arg1 3' flank 26.105133 97.398478 61.7518055 1.79064966 0.055456 161 37 SH15493 15493 YBL092W_2_45639_46364_INTRON_1_333 intron 108.154964 324.445169 108.154964 217.290205 162.7225845 2.211447833 0.055455 55 104 SH5636 5636 snR34 snR34 101 118 25.273496 92.358939 58.8162175 1.769497091 0.055448 44 33 SH11585 11585 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4811 4824 30965.08912 28298.5524 29631.82076 4.471758338 0.055433 15 3 SH5196 5196 snR13 3' 25.120572 91.269405 58.1949885 1.764885587 0.055419 10 29 SH8562 8562 snR19 / U1 RNA U1 306 321 25.676633 95.271758 60.4741955 1.7815701 0.055418 45 9 SH12967 12967 MT COX1 COX1ai2 22.663289 96.161691 22.663289 74.498402 48.5808455 1.686465069 0.055405 25 88 SH17105 17105 YHL001W_8_104270_105084_INTRON_130_527 3' exon 33.57973 146.251114 33.57973 113.671384 73.625557 1.867028593 0.055369 156 5 SH2147 2147 Met1 3' flank 33.279687 113.25578 73.2677335 1.864912757 0.055354 101 69 SH16776 16776 YGL103W_7_310965_311925_INTRON_50_560 intron 24.459898 110.080809 24.459898 86.620911 55.5404045 1.744609038 0.055345 43 95 SH8683 8683 LSR1 / U2 RNA U2 56 73 26.636088 99.918661 63.2773745 1.801248451 0.055332 69 61 SH6155 6155 snR39B 3' 24.468707 86.690919 55.579813 1.744917081 0.055268 208 21 SH1140 1140 His1 5' flank 60.733798 151.09611 105.914954 2.024957282 0.055254 142 63 SH3537 3537 Tyr2 5' flank 26.678154 100.128626 63.40339 1.802112479 0.055199 22 2 SH1947 1947 Lys2 5' flank 25.475978 93.84295 59.659464 1.775679347 0.055157 163 94 SH7057 7057 snR62 snR62 76 95 34.217628 114.570507 74.3940675 1.871538304 0.055117 75 91 SH7120 7120 snR63 snR63 106 124 24.592262 87.575589 56.0839255 1.748838404 0.055077 202 93 SH1979 1979 Lys2 3' flank 26.711334 100.296041 63.5036875 1.802798944 0.055072 52 65 SH5792 5792 snR35 snR35 146 163 23.626592 80.792623 52.2096075 1.717750428 0.055045 184 38 SH20571 20571 YHR010W spliced 185.563662 323.315988 254.439825 2.405585088 0.055016 164 40 SH6894 6894 snR56 3' 22.304281 72.288482 47.2963815 1.674827915 0.055005 46 12 SH2771 2771 Pro6 5' flank 26.44501 99.040199 62.7426045 1.797562543 0.054989 126 34 SH4818 4818 snR5 3' 26.870575 101.061156 63.9658655 1.805948281 0.05496 53 83 SH6417 6417 snR45 5' 28.58898 105.940171 67.2645755 1.827786406 0.05495 172 85 SH14294 14294 MT VAR1 includes 5’ processing site VAR1 24.164027 107.718108 24.164027 84.554081 54.359054 1.73527189 0.054947 85 36 SH15336 15336 YAL030W_1_87288_87754_INTRON_103_215 intron 30.209625 138.238371 30.209625 109.028746 69.6191855 1.842728938 0.054944 33 70 SH21765 21765 copy of SH13600 23.417744 79.36665 51.392197 1.710897184 0.054935 86 11 SH6433 6433 snR45 snR45 11 32 63.955308 155.556938 109.756123 2.040428758 0.054922 158 7 SH9365 9365 RUF1 RUF1 401 418 24.967261 90.227958 57.5976095 1.760404459 0.054909 173 30 SH17402 17402 YIL069C_9_232366_231550_INTRON_4_412 intron 23.894948 105.563333 23.894948 82.668385 53.2816665 1.7265778 0.054899 182 61 SH1848 1848 Leu9 5' flank 26.161652 97.709508 61.93558 1.791940209 0.054876 23 70 SH3728 3728 Val3 3' flank 24.761536 88.7802 56.770868 1.754125534 0.054867 186 81 SH16703 16703 YGL031C_7_438393_437938_INTRON_1_456 intron 24.18281 107.877015 24.18281 84.694205 54.4385075 1.73590621 0.054863 42 38 SH8467 8467 snoRNA cluster 5 3' 25.111427 115.371068 25.111427 91.259641 58.185534 1.764815024 0.054828 46 24 SH18056 18056 YLR333C_12_796335_795573_INTRON_1_423 intron 25.29676 116.882775 25.29676 92.586015 58.9413875 1.770420355 0.054812 46 91 SH12496 12496 MT_tRNA Pro 5' / tRNA 29.394988 135.920467 29.394988 107.525479 68.4602335 1.835438376 0.054811 72 67 SH21465 21465 copy of SH1001 55.581665 144.090881 99.836273 1.99928836 0.05481 112 77 SH6944 6944 snR58 81-96 + 3' 81 25.120861 91.329063 58.224962 1.765109214 0.054804 128 38 SH15079 15079 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.051454 99.054125 23.051454 77.002671 50.0270625 1.699205003 0.054804 144 76 SH424 424 Asp1 5' flank 24.917246 89.886414 57.40183 1.758925738 0.054774 194 8 SH9263 9263 snR6 / U6 RNA 3' 24.268516 85.309866 54.789191 1.738694888 0.054766 153 97 SH3787 3787 RNaseP 5' flank 23.160416 77.703136 50.431776 1.702704262 0.054761 87 39 SH18896 18896 YOL120C_15_94401_93394_INTRON_113_559 intron 25.982254 121.854891 25.982254 96.872637 61.4274455 1.788362455 0.054755 35 62 SH8319 8319 snoRNA cluster4 intergenic 23.204552 100.192318 23.204552 77.987766 50.596159 1.704117549 0.054743 13 79 SH14088 14088 MT COB Cytbi4 24.684772 111.93913 24.684772 88.254358 56.469565 1.751814442 0.054725 146 53 SH19198 19198 YPL081W_16_404945_406039_INTRON_8_508 intron 49.357827 183.89284 49.357827 135.535013 92.44642 1.965890098 0.054713 192 69 SH10057 10057 RUF6 RUF6 131 150 26.042114 97.159936 61.601025 1.789587939 0.054687 173 64 SH543 543 Cys1 tRNA 16 28 36.212432 117.303124 76.757778 1.885122394 0.054669 39 39 SH6976 6976 snR60 5' 29.048142 106.857875 67.9530085 1.832208689 0.054658 93 56 SH10536 10536 RUF8 RUF8 606 623 30.879856 109.995284 70.43757 1.847804365 0.054619 21 55 SH3092 3092 Ser3 3' flank 26.278386 98.2812 62.279793 1.79434716 0.054612 19 36 SH824 824 Glu1 3' flank 25.023751 90.656657 57.840204 1.762229816 0.054607 150 37 SH11804 11804 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5906 5919 35288.47592 31764.71327 33526.59459 4.525389443 0.054598 64 54 SH17952 17952 YLR185W_12_522665_523290_INTRON_8_366 5' exon 40.272693 162.260446 40.272693 122.987753 81.630223 1.911850983 0.054591 31 45 SH2760 2760 Pro5 3' flank 24.43383 86.506837 55.4703335 1.744060777 0.054547 36 84 SH18687 18687 YNL112W_14_413636_416278_INTRON_1274_2275 intron 25.391296 117.685106 25.391296 93.29381 59.342553 1.773366226 0.054516 155 96 SH12655 12655 MT_15S MT_15S 25.261255 116.623009 25.261255 92.361754 58.8115045 1.76946229 0.054493 174 21 SH11374 11374 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3756 3774 75.038671 170.992376 123.0155235 2.089959919 0.054447 213 32 SH15462 15462 YBL087C_2_60732_59815_INTRON_43_546 intron 25.440555 118.096688 25.440555 93.656133 59.548344 1.774869689 0.054441 15 95 SH5990 5990 snR36 3' 25.132901 91.450372 58.2916365 1.765606248 0.054426 191 56 SH9142 9142 snR7 U5 RNA 5' 23.484577 79.868891 51.676734 1.713295058 0.054404 195 67 SH45 45 Ala1 3' flank 29.179077 107.128813 68.153945 1.833490999 0.054391 177 27 SH9294 9294 RUF1 RUF1 46 66 22.86252 75.832955 49.3477375 1.693267246 0.054386 152 77 SH9664 9664 RUF4 RUF4 96 108 29.471217 107.698344 68.5847805 1.836227753 0.054379 174 90 SH18868 18868 YNR053C_14_723108_721117_INTRON_811_1341 intron 23.988839 106.360305 23.988839 83.371466 53.6801525 1.729813741 0.054371 123 41 SH16367 16367 YEL012W_5_131772_132551_INTRON_6_128 3' exon 278.903902 728.255237 278.903902 450.351335 364.6276185 2.561849561 0.054364 128 56 SH8425 8425 snoRNA cluster 5 intergenic 22.461787 94.776905 22.461787 73.315118 47.8884525 1.680230803 0.054357 69 96 SH5486 5486 snR32 snR32 91 108 25.785362 95.975804 60.880583 1.784478803 0.054355 148 50 SH16737 16737 YGL076C_7_365994_364333_INTRON_565_1032 intron 26.547664 125.123909 26.547664 99.576245 63.0619545 1.799767427 0.054351 84 91 SH10569 10569 RUF8 RUF8 771 787 23.862348 82.489244 53.175796 1.725714 0.054338 54 13 SH13642 13642 MT ATP6 ATP6 25.039707 114.835326 25.039707 90.795619 57.917663 1.76281103 0.054332 167 100 SH11622 11622 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4996 5014 23.295757 78.607424 50.9515905 1.707157745 0.05433 2 84 SH18375 18375 YMR116C_13_500687_499455_INTRON_538_810 5' exon 24.802962 112.924077 24.802962 89.121115 56.9620385 1.755585523 0.054325 83 10 SH17369 17369 YIL052C_9_257061_256224_INTRON_38_509 intron 25.836449 121.057312 25.836449 96.220863 61.028656 1.785533806 0.054294 75 53 SH20053 20053 YBR220C spliced 27.580886 103.97451 65.777698 1.818078671 0.054282 122 2 SH16333 16333 YDR471W_4_1401759_1402553_INTRON_32_415 intron/exon 26.953694 127.464576 26.953694 101.510882 64.232288 1.807753392 0.054277 214 58 SH1511 1511 Leu3 tRNA-exon/intron 26 40 41.782663 125.125315 83.453989 1.9214471 0.054261 197 99 SH10053 10053 RUF6 RUF6 111 127 25.011324 90.602969 57.8071465 1.761981532 0.054235 38 52 SH3089 3089 Ser3 3' flank 26.503478 99.376691 62.9400845 1.798927322 0.054224 164 67 SH2584 2584 Pro2 3' flank 24.228827 85.078199 54.653513 1.737618083 0.054208 57 20 SH10369 10369 RUF7 RUF7 456 471 34.797916 115.419458 75.108687 1.87569017 0.054194 210 47 SH18077 18077 YLR344W_12_819312_820142_INTRON_20_466 intron 24.344263 109.25385 24.344263 85.909587 55.126925 1.741363768 0.054083 45 70 SH17786 17786 YKL180W_11_109271_110131_INTRON_310_615 3' exon 24.358785 109.374948 24.358785 86.016163 55.187474 1.741840516 0.054049 76 16 SH11499 11499 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4381 4394 43.520461 127.550253 85.535357 1.932145672 0.054048 129 38 SH16848 16848 YGL183C_7_157071_156547_INTRON_4_86 5' exon 596.395586 1465.671019 596.395586 870.275433 733.3355095 2.865302715 0.05403 37 101 SH18322 18322 YML085C_13_99400_97941_INTRON_26_141 intron 21.952573 91.187124 21.952573 70.234551 46.093562 1.663640271 0.053988 114 89 SH20558 20558 YHL001W spliced 24.338077 85.876945 55.107511 1.741210796 0.053956 155 11 SH827 827 Glu2 5' flank 24.937004 90.102776 57.51989 1.759818047 0.053945 212 31 SH5957 5957 snR36 snR36 241 257 29.652532 108.075429 68.8639805 1.837992122 0.053937 31 24 SH15646 15646 YBR189W_2_604466_605466_INTRON_8_420 intron 80.870851 259.064978 80.870851 179.194127 130.032489 2.114051876 0.053924 180 22 SH16796 16796 YGL137W_7_249872_252741_INTRON_19_218 5' exon 40.854495 163.691411 40.854495 123.836916 82.3457055 1.915640955 0.053924 158 79 SH15274 15274 MT 9S rRNA 9S 23.912337 105.788459 23.912337 82.876122 53.3942295 1.727494324 0.053904 191 23 SH13995 13995 MT COB intronic 23.752077 104.511517 23.752077 81.75944 52.7557585 1.722269872 0.053895 71 73 SH2398 2398 Phe4 tRNA-intron/exon 41 57 27.722125 104.28071 66.0014175 1.819553263 0.053857 106 11 SH21261 21261 YPL079W spliced 30.484573 109.478654 69.9816135 1.844983951 0.05383 56 30 SH2492 2492 Pro1 5' flank 31.846853 111.387599 71.617226 1.855017495 0.053797 156 21 SH10596 10596 RUF8 RUF8 906 918 26.358746 98.726659 62.5427025 1.796176643 0.053767 126 103 SH7655 7655 snoRNA cluster1 5' 25.138364 115.694387 25.138364 91.556023 58.3471935 1.766019971 0.053716 103 39 SH17136 17136 YHR010W_8_126513_127484_INTRON_32_592 intron 27.775245 131.170079 27.775245 104.394834 66.0850395 1.820103154 0.053714 47 47 SH7588 7588 snR189 snR189 11 27 26.836872 101.001455 63.9191635 1.805631083 0.053692 70 10 SH19344 19344 YPL249C-A_16_76239_75699_INTRON_17_254 5' exon 1361.560066 3173.284168 1361.560066 1812.724102 1587.142084 3.200615807 0.053677 79 83 SH2844 2844 Pro7 tRNA-exon/intron 26 38 24.221663 85.075812 54.6487375 1.737580133 0.053664 211 92 SH13280 13280 MT COX1 Exon 5a 24.55769 111.019462 24.55769 87.461772 56.009731 1.748263487 0.053657 83 97 SH7303 7303 snR66 snR66 6 23 97.167385 202.091463 149.629424 2.175017004 0.053642 174 82 SH16725 16725 YGL033W_7_435621_436347_INTRON_56_125 intron 28.089828 132.116524 28.089828 105.026696 66.558262 1.823201973 0.053625 18 92 SH14632 14632 MT 21S rRNA Sce1 endonuc 24.73016 112.403085 24.73016 88.672925 56.7015425 1.753594874 0.053623 120 103 SH586 586 Gln1 5' flank 24.076716 84.056202 54.066459 1.732927927 0.053608 36 99 SH13220 13220 MT COX1 COX1-ai4 24.128875 107.55339 24.128875 84.424515 54.276695 1.734613395 0.053604 49 71 SH21911 21911 copy of SH19564 23.249916 78.369448 50.809682 1.705946477 0.053604 104 15 SH17975 17975 YLR211C_12_564531_563792_INTRON_19_77 5' exon 118.721172 349.910413 118.721172 232.189241 175.4552065 2.24416626 0.053583 100 11 SH6309 6309 snR42 snR42 326 340 41.148721 124.276304 82.7125125 1.917571213 0.053568 93 104 SH9694 9694 RUF4 RUF4 246 266 23.881188 82.689171 53.2851795 1.726606433 0.053547 75 84 SH21694 21694 copy of SH10659 33.947097 114.285482 74.1162895 1.869913669 0.053523 188 97 SH5656 5656 snR34 snR34 201 222 24.07306 84.039183 54.0561215 1.732844882 0.053508 11 44 SH12358 12358 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.494098 118.627852 25.494098 94.133754 59.813926 1.776802309 0.0535 169 38 SH14562 14562 MT 21S rRNA 21S rRNA3 24.798519 112.96477 24.798519 89.166251 56.982385 1.755740623 0.053489 38 3 SH1127 1127 Gly4 3' flank 24.819592 89.318266 57.068929 1.756399722 0.053452 149 81 SH9022 9022 snR17a / U3a U3a 396 413 42.569003 126.274763 84.421883 1.926455035 0.053452 179 6 SH17267 17267 YHR123W_8_354817_356083_INTRON_51_141 exon/intron 28.027015 131.93963 28.027015 104.912615 66.469815 1.82262447 0.05343 80 19 SH8865 8865 LSR1 / U2 RNA U2 966 982 25.968288 96.910459 61.4393735 1.788446779 0.053391 157 31 SH932 932 Gly1 5' flank 25.010366 90.679543 57.8449545 1.762265484 0.053338 112 68 SH17671 17671 YKL006C-A_11_430270_429836_INTRON_37_177 intron 25.567389 119.249358 25.567389 94.681969 60.124679 1.779052771 0.053325 156 55 SH5882 5882 snR35 3' 24.696426 88.463196 56.579811 1.752661492 0.053323 28 22 SH1663 1663 Leu5 3' flank 23.569918 80.5487 52.059309 1.716498399 0.053301 112 18 SH19718 19718 Negative Control 26.954238 101.592181 64.2732095 1.808029987 0.053289 60 34 SH5673 5673 snR34 snR34 286 303 24.961972 90.343035 57.6525035 1.760818171 0.053262 204 50 SH15055 15055 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.265703 108.691385 24.265703 85.425682 54.8456925 1.739142524 0.053246 211 98 SH20376 20376 YER179W spliced 26.264778 98.322603 62.2936905 1.794444061 0.053241 129 13 SH1854 1854 Leu9 tRNA 11 25 2754.608604 3384.288332 3069.448468 3.487060347 0.053225 45 72 SH10792 10792 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 846 866 22.186907 71.698666 46.9427865 1.671568866 0.053209 49 44 SH14845 14845 MT tRNA Asp 3' 24.704167 112.233212 24.704167 88.529045 56.616606 1.752943831 0.053197 200 66 SH6907 6907 snR56 3' 25.725585 95.781709 60.753647 1.783572353 0.053197 195 18 SH7374 7374 snR68 snR68 91 108 25.933484 96.761866 61.347675 1.787798108 0.053186 98 68 SH7675 7675 snoRNA cluster1 snR78/intergenic 24.742722 112.54414 24.742722 88.801418 56.77207 1.75413473 0.053182 57 61 SH12995 12995 MT COX1 COX1ai2 25.786952 120.859729 25.786952 96.072777 60.9298645 1.784830212 0.053168 63 31 SH21803 21803 copy of SH15073 24.475216 86.929198 55.702207 1.745872403 0.053157 13 45 SH15971 15971 YDL136W_4_217600_218367_INTRON_4_408 5' exon 33.89525 147.13233 33.89525 114.23708 74.066165 1.869619858 0.053101 199 24 SH745 745 Gln4 5' flank - tRNA15 15 34.687815 115.331141 75.009478 1.875116143 0.053089 73 30 SH15010 15010 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.299578 117.070083 25.299578 92.770505 59.0350415 1.771109873 0.053085 17 41 SH21448 21448 copy of SH168 27.543148 103.965481 65.7543145 1.817924255 0.053074 162 102 SH16047 16047 YDL191W_4_117665_118518_INTRON_4_494 intron 23.662547 103.873423 23.662547 81.210876 52.4367115 1.719635448 0.053044 7 75 SH7264 7264 snR65 96-100 + 3' 96 25.368885 93.27736 59.3231225 1.773224002 0.053001 152 84 SH17314 17314 YHR203C_8_505526_504472_INTRON_15_283 intron 29.946629 137.644932 29.946629 108.698303 69.322466 1.840874003 0.052994 181 73 SH17050 17050 YGR214W_7_920570_921783_INTRON_91_545 intron 31.853384 142.295251 31.853384 111.441867 71.6476255 1.855201802 0.052957 38 55 SH8729 8729 LSR1 / U2 RNA U2 286 307 22.740081 75.167608 48.9538445 1.689786804 0.052949 196 17 SH19666 19666 SIR1 2.4 23.822621 82.331811 53.077216 1.724908135 0.052949 113 74 SH2177 2177 Met2 tRNA 16 28 33.809363 114.127014 73.9681885 1.869044983 0.052934 92 26 SH13674 13674 MT ATP6 3' 25.755476 120.700005 25.755476 95.944529 60.8500025 1.7842606 0.052903 151 19 SH15207 15207 MT COX3 cox3 22.314195 93.819807 22.314195 72.505612 47.4099035 1.675869071 0.052874 68 70 SH19298 19298 YPL198W_16_173151_174701_INTRON_12_420 5' exon 25.609389 119.643345 25.609389 95.033956 60.3216725 1.780473374 0.052844 210 104 SH17818 17818 YKR057W_11_551293_551878_INTRON_25_346 intron 29.727781 137.011822 29.727781 108.284041 69.005911 1.838886294 0.052842 16 53 SH6619 6619 snR48 5' 22.662382 74.686502 48.674442 1.687300982 0.05283 53 89 SH5383 5383 snR31 5' 27.694973 104.284496 65.9897345 1.819476381 0.052808 133 56 SH20497 20497 YGR001C spliced 57.631977 147.053924 102.3429505 2.010057933 0.052793 2 104 SH11555 11555 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4661 4674 462.720573 697.749881 580.235227 2.763604092 0.052786 14 29 SH5569 5569 snR33 snR33 131 143 26.9076 101.412596 64.160098 1.807265019 0.052754 43 40 SH6812 6812 snR52 5' 27.098679 102.324303 64.711491 1.810981406 0.052746 124 95 SH4783 4783 snR5 snR5 86 105 24.675072 88.368242 56.521657 1.752214885 0.052717 100 104 SH18574 18574 YNL044W_14_545264_545873_INTRON_25_103 5' exon 28.537181 133.501428 28.537181 105.964247 67.250714 1.8276969 0.052706 51 80 SH2713 2713 Pro5 5' flank 27.117849 102.419167 64.768508 1.811363893 0.052704 94 69 SH1862 1862 Leu9 tRNA-intron/exon 51 70 25.141392 91.673226 58.407309 1.766467197 0.052699 83 52 SH2425 2425 Phe4 3' flank 27.750052 104.401881 66.0759665 1.820043524 0.052678 148 85 SH1645 1645 Leu5 tRNA 91 108 25.296087 92.785431 59.040759 1.771151932 0.052665 7 50 SH6734 6734 snR49 3' 36.758156 118.144888 77.451522 1.889029957 0.052655 25 28 SH749 749 Gln4 tRNA 16 32 24.421177 86.587682 55.5044295 1.744327643 0.052655 164 33 SH7490 7490 snR71 snR71 66 85 26.626864 100.085903 63.3563835 1.801790379 0.052642 40 75 SH19925 19925 YBL018C spliced 25.001801 90.684049 57.842925 1.762250246 0.052636 206 18 SH14500 14500 MT 21S rRNA 21S rRNA3 2387.958231 5373.633013 2387.958231 2986.674782 2687.316507 3.42931882 0.052533 6 77 SH14505 14505 MT 21S rRNA 21S rRNA3 77.146547 250.257154 77.146547 174.110607 125.628577 2.099088441 0.052447 212 69 SH8536 8536 snR19 / U1 RNA U1 176 195 25.094048 91.364667 58.2293575 1.765141998 0.052384 70 5 SH8943 8943 snR17a / U3a U3a 1 15 26.828994 101.069664 63.949329 1.805835992 0.052358 73 51 SH2404 2404 Phe4 tRNA 71 87 62.293149 153.496331 107.89474 2.033000273 0.052336 120 84 SH12386 12386 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.841109 131.446141 27.841109 104.605032 66.2230705 1.821009313 0.052297 188 38 SH17662 17662 YKL002W_11_437416_438182_INTRON_61_128 3' exon 33.010991 145.071795 33.010991 113.060804 73.0358975 1.86353637 0.052294 33 74 SH4972 4972 snR9 3' 29.890203 108.63281 69.2615065 1.840491934 0.052241 84 11 SH5697 5697 snR34 snR34 406 422 23.856118 82.628038 53.242078 1.726254997 0.052227 139 86 SH884 884 Glu3 5' flank 29.622674 108.118368 68.870521 1.838033368 0.052179 104 55 SH17878 17878 YLR048W_12_242233_243350_INTRON_91_449 intron 27.737316 131.141623 27.737316 104.404307 66.0708115 1.820009641 0.052175 106 80 SH8623 8623 snR19 / U1 RNA U1 611 630 27.563837 104.058791 65.811314 1.818300562 0.052136 173 4 SH4404 4404 telomerase RNA telomerase 1056 1072 27.473682 103.877743 65.6757125 1.817404793 0.052136 35 73 SH15680 15680 YBR191W_2_606228_607098_INTRON_12_399 intron 66.395691 224.559601 66.395691 159.16391 112.7798005 2.052231322 0.052135 63 55 SH16171 16171 YDR139C_4_733917_733611_INTRON_150_222 3' exon 26.596976 125.584745 26.596976 99.987769 63.2923725 1.801351375 0.052084 168 48 SH129 129 Arg1 21-33 21 33 36.762382 118.184198 77.47329 1.889151999 0.052072 85 37 SH3697 3697 Val3 5' flank 25.068268 91.211505 58.1398865 1.76447418 0.052055 35 97 SH15122 15122 MT tRNA Phe 5' 24.295282 109.039494 24.295282 85.744212 55.019747 1.740518589 0.052039 166 75 SH10953 10953 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1651 1667 32189.15116 29345.49846 30767.32481 4.488089736 0.052035 165 10 SH3603 3603 Val1 tRNA 11 26 555.361212 818.639755 687.0004835 2.836957043 0.052011 153 14 SH6438 6438 snR45 snR45 36 54 24.607605 87.962297 56.284951 1.750392292 0.051974 122 32 SH4639 4639 snR3 snR3 111 127 26.603479 100.028165 63.315822 1.801512249 0.051963 111 71 SH12481 12481 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S/3' flank 21.81229 90.351314 21.81229 69.539024 45.675657 1.659684803 0.05194 82 23 SH11266 11266 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3216 3234 25.905217 96.726076 61.3156465 1.787571312 0.051901 39 8 SH436 436 Asp1 tRNA 1 18 26.731551 100.64437 63.6879605 1.804057342 0.051872 170 32 SH922 922 Glu3 3' flank 22.861535 76.019947 49.440741 1.694084971 0.051863 121 34 SH21532 21532 copy of SH3752 26.4452 99.28574 62.86547 1.798412167 0.051845 191 29 SH16109 16109 YDR064W_4_579453_580447_INTRON_22_560 intron 28.740086 134.152956 28.740086 106.41287 67.576478 1.829795553 0.051842 69 26 SH16838 16838 YGL178W_7_167356_170575_INTRON_4_643 intron 35.523965 151.064282 35.523965 116.540317 76.032141 1.88099722 0.051836 61 11 SH5852 5852 snR35 snR35 446 462 50.502463 137.343048 93.9227555 1.972770825 0.051811 180 104 SH15094 15094 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " intronic / orf2exon2 24.572635 111.306352 24.572635 87.733717 56.153176 1.749374325 0.051793 8 93 SH19083 19083 YOR293W_15_867094_867848_INTRON_53_489 intron 28.495425 133.428643 28.495425 105.933218 67.2143215 1.827461819 0.051791 113 79 SH18328 18328 YML094W_13_82275_82849_INTRON_17_99 intron 24.975497 114.554155 24.975497 90.578658 57.7770775 1.76175557 0.051758 134 12 SH6738 6738 snR49 3' 24.19608 85.067064 54.631572 1.737443697 0.051723 100 26 SH1619 1619 Leu5 5' flank 23.724003 81.751712 52.7378575 1.722122482 0.051704 59 55 SH17113 17113 YHR001W-A_8_107819_108115_INTRON_7_69 3' exon 24.576541 111.345827 24.576541 87.769286 56.1729135 1.74952695 0.051702 209 2 SH17049 17049 YGR214W_7_920570_921783_INTRON_91_545 intron 30.252666 138.513898 30.252666 109.261232 69.756949 1.843587477 0.051702 46 49 SH11192 11192 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2846 2863 43.473887 127.642189 85.558038 1.932260817 0.051647 116 61 SH12161 12161 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7691 7709 44.068531 128.458589 86.26356 1.935827377 0.051622 59 36 SH14114 14114 MT COB intronic 25.063786 115.284128 25.063786 91.220342 58.142064 1.764490445 0.051619 161 92 SH7468 7468 snR71 5' 24.666113 88.407607 56.53686 1.752331685 0.051589 46 97 SH1705 1705 Leu6 3' flank 25.870942 96.588092 61.229517 1.786960834 0.051588 89 38 SH12768 12768 MT COX1 COX1ai1 24.13019 107.742658 24.13019 84.612468 54.371329 1.735369949 0.051583 209 16 SH19591 19591 AEP2/ATP13 2.1 34.297227 114.88551 74.5913685 1.872688575 0.051464 136 67 SH6516 6516 snR46 snR46 71 88 23.331473 79.067361 51.199417 1.709265016 0.051449 15 75 SH9692 9692 RUF4 RUF4 236 255 24.97884 90.631494 57.805167 1.76196666 0.051445 108 33 SH12258 12258 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 160.41961 449.035152 160.41961 289.615542 225.017576 2.352216442 0.051429 168 72 SH2526 2526 Pro1 3' flank 24.159565 84.835077 54.497321 1.736375154 0.051419 92 55 SH15071 15071 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.974545 106.503752 23.974545 83.529207 53.751876 1.730393626 0.051414 18 54 SH6390 6390 snR43 191-209 + 3' 191 24.463301 87.003051 55.733176 1.746113792 0.051406 101 6 SH20084 20084 YCR097W spliced 24.847715 89.709058 57.2783865 1.757990776 0.05136 31 29 SH9728 9728 RUF4 RUF4 416 431 24.803473 89.399221 57.101347 1.756646353 0.051328 192 42 SH17428 17428 YIL133C_9_99416_98527_INTRON_32_321 exon/intron 28.474859 133.394318 28.474859 105.919459 67.197159 1.827350912 0.051313 180 37 SH4698 4698 snR4 snR4 26 45 23.618056 81.055842 52.336949 1.718808402 0.051239 180 64 SH10847 10847 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1121 1138 573.721916 842.731186 708.226551 2.850172204 0.051238 151 3 SH4654 4654 snR3 186-195 + 3' 186 22.772073 75.501266 49.1366695 1.691405717 0.051222 186 54 SH5747 5747 snR35 5' 37.767428 119.676669 78.7220485 1.896096387 0.051162 17 95 SH923 923 Glu3 3' flank 23.50183 80.259222 51.880526 1.715004371 0.051161 137 49 SH7805 7805 snoRNA cluster1 snR75/intergenic 24.1862 108.234204 24.1862 85.048004 54.617102 1.737328653 0.051149 118 8 SH9784 9784 RUF4 RUF4 696 717 23.96033 83.454085 53.7072075 1.730032572 0.051129 107 4 SH11004 11004 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1906 1924 2881.518978 3525.600098 3203.559538 3.5056328 0.051083 46 68 SH17621 17621 YJR094W-A_10_608000_608553_INTRON_3_277 5' exon 28.355645 133.052258 28.355645 105.696613 67.026129 1.826244138 0.051079 50 63 SH1509 1509 Leu3 tRNA 16 28 29.557398 108.056972 68.807185 1.837633791 0.05104 113 100 SH9028 9028 snR17a / U3a U3a 426 444 23.710494 81.714798 52.712646 1.721914817 0.051036 209 30 SH14950 14950 MT tRNA Met tRNA 25.545281 119.289211 25.545281 94.74393 60.1446055 1.779196681 0.051034 25 63 SH8974 8974 snR17a / U3a U3a 156 173 26.43308 99.292537 62.8628085 1.79839378 0.051019 10 19 SH13762 13762 MT COB intronic 23.503396 102.789378 23.503396 80.285982 51.894689 1.715122914 0.050971 100 59 SH9037 9037 snR17a / U3a U3a 471 486 105.714584 214.447155 160.0808695 2.204339435 0.05097 58 16 SH19449 19449 CYC1 33.13439 113.300574 73.217482 1.864614789 0.050961 148 28 SH11515 11515 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4461 4477 42.592822 126.470535 84.5316785 1.927019493 0.050923 199 59 SH12752 12752 MT COX1 COX1ai1 24.251302 108.782686 24.251302 85.531384 54.891343 1.739503857 0.050919 151 27 SH16775 16775 YGL103W_7_310965_311925_INTRON_50_560 intron 23.041286 99.281471 23.041286 77.240185 50.1407355 1.7001907 0.050916 94 43 SH11595 11595 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4861 4874 25.857973 96.578338 61.2181555 1.78688024 0.050909 57 13 SH9836 9836 RUF5-1 5' - 7 -14 7 23.066983 77.40661 50.2367965 1.701021938 0.050894 49 22 SH3906 3906 RNase MRP 5' 25.048046 91.177592 58.112819 1.764271943 0.050876 153 81 SH21878 21878 copy of SH18253 23.346304 79.214716 51.28051 1.709952336 0.050871 205 2 SH19230 19230 YPL090C_16_378390_377286_INTRON_7_400 intron 23.884511 105.829589 23.884511 82.945078 53.4147945 1.727661562 0.050862 47 83 SH8438 8438 snoRNA cluster 5 intergenic/snR128 84.612598 268.329299 84.612598 184.716701 134.6646495 2.129253605 0.05086 11 26 SH3773 3773 Val4 3' flank 25.602226 95.175584 60.388905 1.780957155 0.050858 45 73 SH20718 20718 YJL136C spliced 48.58178 134.754753 91.6682665 1.962219019 0.050843 147 84 SH18387 18387 YMR116C_13_500687_499455_INTRON_538_810 intron 24.134758 107.845413 24.134758 84.710655 54.4227065 1.735780136 0.05084 182 28 SH17996 17996 YLR287C-A_12_713158_712537_INTRON_4_433 intron 48.414138 181.940888 48.414138 134.52675 91.470444 1.961280787 0.050839 177 19 SH5324 5324 snR30 snR30 471 483 551.423659 814.18743 682.8055445 2.834297039 0.050827 84 25 SH11624 11624 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5006 5023 61.247807 152.174668 106.7112375 2.028210156 0.050817 66 32 SH7525 7525 snR79 5' 24.345707 86.215378 55.2805425 1.742572296 0.050801 194 90 SH15441 15441 YBL072C_2_89435_88518_INTRON_1_308 3' exon 28.337872 133.015803 28.337872 105.677931 67.0079015 1.826126017 0.050784 65 67 SH2539 2539 Pro2 5' flank 25.343813 93.309743 59.326778 1.773250763 0.050773 119 55 SH15935 15935 YDL115C_4_255042_253994_INTRON_1_88 intron 24.602716 111.640318 24.602716 88.037602 56.320159 1.750663872 0.05076 188 5 SH6886 6886 snR56 snR56 61 82 24.397502 86.591272 55.494387 1.744249058 0.050744 110 27 SH5573 5573 snR33 snR33 151 170 42.25423 126.011271 84.1327505 1.924965087 0.050726 199 65 SH8656 8656 LSR1 / U2 RNA 5' 23.733808 81.905035 52.8194215 1.72279364 0.05071 54 39 SH17030 17030 YGR183C_7_859471_859058_INTRON_4_216 exon/intron 25.910188 121.7521 25.910188 96.841912 61.37605 1.787998935 0.050685 204 40 SH8181 8181 snoRNA cluster 3; snR70 38.117224 157.322992 38.117224 120.205768 79.161496 1.898513993 0.050672 3 97 SH8484 8484 snR19 / U1 RNA 5' 29.716005 108.387926 69.0519655 1.839176045 0.050639 6 30 SH10440 10440 RUF8 RUF8 126 142 30.361668 109.473788 69.917728 1.844587307 0.050621 22 36 SH2704 2704 Pro5 5' flank 25.218981 92.428223 58.823602 1.769551615 0.050591 45 66 SH10211 10211 RUF6 RUF6 901 915 26.827288 101.201997 64.0146425 1.806279324 0.050588 212 97 SH15557 15557 YBR082C_2_407127_406586_INTRON_48_142 intron 24.33059 109.457696 24.33059 86.127106 55.228848 1.742165985 0.050582 182 87 SH695 695 Gln3 tRNA 6 23 79.683603 177.863004 128.7733035 2.109825837 0.050562 83 50 SH19662 19662 SIR1 2.2 29.538047 108.047727 68.792887 1.837543536 0.050546 65 56 SH78 78 Ala2 26-40 26 40 24.759118 89.158837 56.9589775 1.755562184 0.050532 114 7 SH2538 2538 Pro2 5' flank 25.394483 93.698969 59.546726 1.774857888 0.050532 120 60 SH8585 8585 snR19 / U1 RNA U1 421 438 30.674609 109.922986 70.2987975 1.846947896 0.05053 135 35 SH12614 12614 MT_15S MT_15S 25.796481 121.115382 25.796481 96.318901 61.057691 1.785740377 0.050502 104 57 SH21870 21870 copy of SH18600 25.524381 94.646841 60.085611 1.778770482 0.05047 24 83 SH6675 6675 snR49 5' 27.092334 102.47838 64.785357 1.811476856 0.050451 202 47 SH10594 10594 RUF8 RUF8 896 908 31.147953 110.596015 70.871984 1.850474591 0.050417 30 90 SH9854 9854 RUF5-1 RUF5-1 76 93 27.402026 103.829229 65.6156275 1.817007286 0.050401 118 59 SH9487 9487 RUF2 3' 23.636604 81.25822 52.447412 1.719724063 0.05037 143 51 SH13091 13091 MT COX1 COX1ai3 24.364519 109.753687 24.364519 86.389168 55.3768435 1.743328197 0.050367 199 82 SH432 432 Asp1 5' flank - tRNA2 5' flank 2 24.054683 84.186071 54.120377 1.733360813 0.050365 35 31 SH7076 7076 snR62 3' 27.275452 103.364462 65.319957 1.81504589 0.05033 55 45 SH7914 7914 snoRNA cluster1 intergenic/snR72 31.956792 142.683279 31.956792 111.726487 71.8416395 1.856376235 0.05033 118 33 SH9494 9494 RUF2 3' 24.397175 86.627444 55.5123095 1.744389296 0.050319 195 103 SH14483 14483 MT 21S rRNA 21S rRNA3 32.836046 144.769462 32.836046 112.933416 72.884731 1.862636555 0.050284 112 97 SH1804 1804 Leu8 tRNA-intron/exon 46 63 25.643218 95.531418 60.587318 1.782381728 0.050277 110 34 SH12560 12560 MT_15S MT_15S 1126.160223 2657.493355 1126.160223 1532.333132 1329.246678 3.123605583 0.050254 21 70 SH19253 19253 YPL129W_16_305297_306136_INTRON_10_114 intron/exon 28.85945 134.598093 28.85945 106.738643 67.7990465 1.831223586 0.050234 46 85 SH21844 21844 copy of SH17379 24.32377 86.109955 55.2168625 1.742071726 0.050232 22 12 SH20000 20000 YBR078W spliced 29.69344 108.367886 69.030663 1.839042045 0.050226 42 69 SH7426 7426 snR69 snR69 31 47 33.535679 113.896954 73.7163165 1.867563626 0.050213 77 78 SH20868 20868 YLR128W spliced 26.025041 97.422364 61.7237025 1.790451969 0.050193 200 58 SH4955 4955 snR9 181-187 + 3' 181 24.276764 85.778187 55.0274755 1.740579589 0.050189 63 62 SH5620 5620 snR34 snR34 21 37 25.786121 96.296962 61.0415415 1.785625492 0.050145 197 50 SH1519 1519 Leu3 tRNA-intron/exon 66 82 35.311029 116.350065 75.830547 1.879844189 0.050112 6 58 SH15550 15550 YBR078W_2_393082_394818_INTRON_59_388 intron 22.86275 98.02824 22.86275 76.16549 49.51412 1.694729065 0.050068 101 79 SH8184 8184 snoRNA cluster 3; snR70 54.180936 195.687002 54.180936 142.506066 98.343501 1.992745665 0.05005 155 51 SH2675 2675 Pro4 tRNA-intron 41 57 32.896311 113.028419 72.962365 1.863098903 0.050043 160 104 SH17715 17715 YKL081W_11_282533_284097_INTRON_206_531 intron 25.963972 122.110195 25.963972 97.146223 61.5550975 1.789264024 0.050027 29 9 SH6739 6739 snR49 3' 22.557225 74.236769 48.396997 1.684818415 0.050006 182 30 SH3465 3465 Trp1 3' flank 26.963452 101.899007 64.4312295 1.809096419 0.049996 129 3 SH21845 21845 copy of SH17380 23.148808 78.005106 50.576957 1.703952696 0.049967 82 33 SH10049 10049 RUF6 RUF6 91 110 30.004098 108.985116 69.494607 1.841951103 0.04995 142 51 SH11328 11328 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3526 3541 29656.19811 27340.94195 28498.57003 4.454823069 0.04994 78 2 SH4111 4111 SRP RNA SRP RNA 446 460 28.408809 105.866698 67.1377535 1.826966805 0.049926 173 103 SH11201 11201 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2891 2909 32.079096 111.918563 71.9988295 1.857325436 0.049898 96 28 SH131 131 Arg1 31-43 31 43 65.613382 158.25802 111.935701 2.048968623 0.049894 96 33 SH19590 19590 AEP2/ATP13 2.1 24.250524 85.618823 54.9346735 1.739846548 0.04988 63 15 SH12991 12991 MT COX1 COX1ai2 36.346955 153.105242 36.346955 117.758287 77.052621 1.886787416 0.049879 149 104 SH10233 10233 RUF6 RUF6 1011 1031 24.579455 87.955392 56.2674235 1.750257029 0.049864 96 68 SH21617 21617 copy of SH7318 24.973964 90.748326 57.861145 1.762387024 0.049816 167 67 SH10704 10704 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 406 424 24.126849 84.746563 54.436706 1.735891838 0.049802 31 93 SH1125 1125 Gly4 3' flank 24.907217 90.279098 57.5931575 1.760370889 0.049756 67 32 SH3094 3094 Ser3 3' flank 32.904275 113.055429 72.979852 1.863202978 0.049747 16 75 SH7922 7922 snoRNA cluster1 snR72 24.893432 114.077412 24.893432 90.18398 57.538706 1.759960091 0.049726 142 98 SH14818 14818 "MT tRNAs (Lys, Arg1, Gly)" intergenic 25.029364 115.181352 25.029364 91.151988 58.090676 1.76410643 0.049724 68 28 SH8854 8854 LSR1 / U2 RNA U2 911 925 7751.852516 8404.060909 8077.956713 3.907301522 0.049712 199 58 SH17766 17766 YKL157W_11_154993_158183_INTRON_282_664 3' exon 24.245807 108.848092 24.245807 85.602285 54.924046 1.739762522 0.049689 25 101 SH5585 5585 snR33 3' 22.477176 73.758974 48.118075 1.682308245 0.049672 169 87 SH15681 15681 YBR191W_2_606228_607098_INTRON_12_399 intron 24.038822 107.174234 24.038822 84.135412 54.087117 1.733093833 0.049668 42 30 SH19222 19222 YPL090C_16_378390_377286_INTRON_7_400 5' exon 29.873062 137.621709 29.873062 108.748647 69.3108545 1.840801253 0.049658 185 32 SH20331 20331 YER074W spliced 27.507823 104.08374 65.7957815 1.81819805 0.049647 29 58 SH13831 13831 MT COB Cytbi2 22.57819 95.97413 22.57819 74.39594 48.487065 1.685625896 0.049643 143 82 SH21644 21644 copy of SH8559 26.812336 101.205911 64.0091235 1.80624188 0.049641 28 5 SH4751 4751 snR5 5' 1128.024071 1535.232523 1331.628297 3.124383015 0.04963 131 25 SH18577 18577 YNL044W_14_545264_545873_INTRON_25_103 intron 25.710343 120.689322 25.710343 95.978979 60.844661 1.784222476 0.04962 129 63 SH20659 20659 YIL018W spliced 30.013693 109.022898 69.5182955 1.842099115 0.049617 187 11 SH16537 16537 YER131W_5_423587_424307_INTRON_1_361 intron 24.031845 107.125511 24.031845 84.093666 54.0627555 1.732898177 0.049582 37 33 SH16842 16842 YGL178W_7_167356_170575_INTRON_4_643 intron 29.426919 136.314516 29.426919 107.887597 68.657258 1.836686455 0.049565 172 5 SH2542 2542 Pro2 5' flank 25.122906 91.835926 58.479416 1.767003027 0.049565 150 82 SH3498 3498 Tyr1 tRNA-exon/intron 31 48 38.397438 120.671999 79.5347185 1.900556748 0.049555 66 30 SH17246 17246 YHR097C_8_298611_297387_INTRON_126_249 5' exon 195.73814 533.039101 195.73814 338.300961 267.0195505 2.42654306 0.049533 58 4 SH15350 15350 YBL018C_2_186436_185960_INTRON_48_122 3' exon 66.860983 225.908647 66.860983 160.047664 113.4543235 2.054821051 0.049499 171 57 SH20696 20696 YIL148W spliced 24.451731 87.093713 55.772722 1.746421841 0.049497 134 18 SH17046 17046 YGR214W_7_920570_921783_INTRON_91_545 intron 24.239781 108.817306 24.239781 85.577525 54.908653 1.73964079 0.049486 123 82 SH6726 6726 snR49 156-165 + 3' 156 24.962145 90.696146 57.8291455 1.762146775 0.049473 53 57 SH16383 16383 YER007C-A_5_166884_166236_INTRON_12_114 intron 23.45658 102.546156 23.45658 80.089576 51.773078 1.714103985 0.049465 86 63 SH19608 19608 RNA14 1.1 24.079784 84.445874 54.262829 1.734502432 0.049432 101 45 SH12407 12407 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.44137 143.883668 32.44137 112.442298 72.441834 1.859989437 0.049418 199 8 SH11612 11612 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4946 4959 61.895217 153.189811 107.542514 2.031580185 0.0494 75 27 SH9649 9649 RUF4 RUF4 21 33 27.579615 104.243277 65.911446 1.81896084 0.049372 120 4 SH15738 15738 YCR028C-A_3_173432_172942_INTRON_243_325 5' exon 24.994614 114.939144 24.994614 90.94453 57.969572 1.763200094 0.04929 184 104 SH13409 13409 MT COX1 intronic 24.351359 109.744222 24.351359 86.392863 55.372111 1.743291081 0.049284 149 20 SH6636 6636 snR48 snR48 6 25 122.867591 238.529625 180.698608 2.256954807 0.049278 211 51 SH21800 21800 copy of SH15070 26.189322 98.272788 62.231055 1.794007164 0.049252 68 48 SH10854 10854 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1156 1171 123.970075 240.054907 182.012491 2.260101193 0.049235 191 35 SH15888 15888 YDL082W_4_308423_309387_INTRON_5_369 intron 24.289566 109.246927 24.289566 85.957361 55.1234635 1.741336497 0.049212 138 34 SH11409 11409 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3931 3944 32.643554 112.730261 72.6869075 1.861456192 0.049204 128 54 SH9881 9881 RUF5-1 RUF5-1 211 225 26.316385 98.879629 62.598007 1.796560506 0.049203 61 43 SH15815 15815 YDL061C_4_341182_340627_INTRON_1_408 intron/exon 24.970215 114.749938 24.970215 90.779723 57.874969 1.762490771 0.049192 129 92 SH3901 3901 RNase MRP 5' 23.964468 83.652522 53.808495 1.730850845 0.049192 203 45 SH1819 1819 Leu8 3' flank 24.521752 87.613184 56.067468 1.748710944 0.049173 161 102 SH9301 9301 RUF1 RUF1 81 97 25.829132 96.573879 61.2015055 1.786762106 0.04917 48 49 SH3497 3497 Tyr1 tRNA-exon/intron 26 42 26.834132 101.348259 64.0911955 1.806798373 0.049159 29 29 SH11623 11623 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5001 5018 28.84501 106.772462 67.808736 1.831285649 0.049136 114 61 SH9316 9316 RUF1 RUF1 156 175 24.119787 84.756441 54.438114 1.735903071 0.049126 95 9 SH5148 5148 snR11 3' 24.40018 86.761853 55.5810165 1.744926485 0.049074 67 81 SH19490 19490 YPT1 29.810021 108.662014 69.2360175 1.840332079 0.049044 148 90 SH13384 13384 MT COX1 Exon 5b 38.627045 158.657727 38.627045 121.030682 79.8288635 1.902159946 0.04901 49 52 SH16287 16287 YDR450W_4_1359912_1360787_INTRON_48_482 5' exon 26.773002 126.846051 26.773002 101.073049 63.9230255 1.805657322 0.04895 30 71 SH15872 15872 YDL079C_4_314747_312950_INTRON_413_704 3' exon 31.892617 142.606061 31.892617 111.713444 71.8030305 1.856142774 0.048929 24 71 SH20939 20939 YLR406C spliced 24.868738 90.083704 57.476221 1.759488206 0.048914 145 48 SH7947 7947 snoRNA cluster1 3' 30.445037 139.127948 30.445037 109.682911 70.063974 1.845494767 0.048914 100 47 SH12994 12994 MT COX1 COX1ai2 24.346166 109.740193 24.346166 86.394027 55.3700965 1.74327528 0.048859 51 48 SH8730 8730 LSR1 / U2 RNA U2 291 308 22.469921 73.774468 48.1221945 1.682345424 0.048852 193 39 SH44 44 Ala1 3' flank 28.520929 106.150679 67.335804 1.82824605 0.048824 49 98 SH6303 6303 snR42 snR42 296 313 25.159816 92.171702 58.665759 1.768384694 0.048813 203 23 SH9913 9913 RUF5-1 RUF5-1 371 392 23.160729 78.173042 50.6668855 1.704724209 0.048811 213 79 SH14144 14144 MT COB intronic 23.903064 106.158573 23.903064 83.255509 53.5792865 1.728996926 0.048789 19 67 SH8725 8725 LSR1 / U2 RNA U2 266 278 139.659769 261.622488 200.6411285 2.302419962 0.04878 136 50 SH2377 2377 Phe4 5' flank 24.160637 85.077901 54.619269 1.737345883 0.048773 37 52 SH20155 20155 YDL125C spliced 26.497209 99.774115 63.135662 1.800274739 0.048756 47 34 SH19501 19501 YPT1 27.08797 102.59477 64.84137 1.811852182 0.048745 180 70 SH4297 4297 telomerase RNA telomerase 521 537 23.973373 83.75487 53.8641215 1.731299581 0.048741 47 25 SH9132 9132 snR7 U5 RNA 5' 23.143838 78.070563 50.6072005 1.704212314 0.048729 174 99 SH5265 5265 snR30 snR30 176 188 27.881778 104.884824 66.383301 1.822058844 0.048726 25 74 SH232 232 Arg3 16-32 16 32 25.000534 91.039671 58.0201025 1.763578492 0.048724 123 97 SH11085 11085 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2311 2329 853.543054 1197.980087 1025.761571 3.011046424 0.048719 106 46 SH18129 18129 YLR388W_12_898158_898821_INTRON_1_488 3' exon 31.266204 141.121531 31.266204 110.855327 71.0607655 1.851629882 0.048669 126 100 SH6472 6472 snR45 3' 23.294726 79.053041 51.1738835 1.709048376 0.048643 160 99 SH4294 4294 telomerase RNA telomerase 506 522 24.190841 85.305938 54.7483895 1.738371348 0.048625 64 66 SH9673 9673 RUF4 RUF4 141 156 27.143173 102.869842 65.0065075 1.812956834 0.048612 166 77 SH18683 18683 YNL112W_14_413636_416278_INTRON_1274_2275 intron 32.784566 144.739994 32.784566 112.955428 72.869997 1.862548752 0.048599 171 25 SH3876 3876 RNaseP RNaseP 346 360 28.311977 105.749458 67.0307175 1.826273868 0.048594 168 41 SH4683 4683 snR4 5' 22.587222 74.531783 48.5595025 1.686274229 0.048592 196 39 SH5938 5938 snR36 snR36 146 162 24.211641 85.459724 54.8356825 1.739063253 0.048562 58 10 SH11828 11828 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6026 6043 14557.4926 14632.4521 14594.97235 4.164203276 0.048548 105 64 SH2849 2849 Pro7 tRNA-intron 51 67 143.10659 266.423257 204.7649235 2.311255563 0.048439 202 65 SH21415 21415 Ser4 spliced 28.121432 105.38099 66.751211 1.824459149 0.048406 5 17 SH10229 10229 RUF6 RUF6 991 1010 23.363899 79.541042 51.4524705 1.711406232 0.048395 104 29 SH9715 9715 RUF4 RUF4 351 368 56.743725 146.185282 101.4645035 2.006314135 0.048379 83 2 SH4609 4609 snR3 5' 23.295647 79.082229 51.188938 1.709176119 0.048352 167 10 SH8056 8056 snoRNA cluster 2 intergenic 26.583377 125.800186 26.583377 100.216809 63.400093 1.802089895 0.048344 167 12 SH4952 4952 snR9 snR9 166 182 26.402671 99.362621 62.882646 1.798530808 0.048266 128 20 SH2116 2116 Met1 5' flank 25.194701 92.475692 58.8351965 1.769637208 0.048251 63 73 SH17912 17912 YLR061W_12_263195_263949_INTRON_13_401 intron 23.248865 101.036629 23.248865 78.787764 51.0183145 1.707726107 0.048242 23 35 SH20291 20291 YDR500C spliced 88.831886 190.962914 139.8974 2.145809643 0.048224 27 47 SH18671 18671 YNL112W_14_413636_416278_INTRON_1274_2275 intron 24.972499 114.859174 24.972499 90.886675 57.929587 1.762900432 0.048219 209 31 SH17380 17380 YIL052C_9_257061_256224_INTRON_38_509 intron 23.561242 103.479343 23.561242 80.918101 52.2396715 1.718000437 0.048217 76 71 SH15965 15965 YDL130W_4_229906_230527_INTRON_115_415 intron 23.89337 106.132305 23.89337 83.238935 53.5661525 1.728890453 0.048197 9 27 SH14423 14423 MT 21S rRNA 21S rRNA3 23.747297 104.962584 23.747297 82.215287 52.981292 1.724122545 0.048192 162 7 SH13589 13589 MT COX1 3' 24.81444 113.581441 24.81444 89.767001 57.2907205 1.758084284 0.048171 4 86 SH3824 3824 RNaseP RNaseP 86 100 163.175018 293.951659 228.5633385 2.359006571 0.048145 63 23 SH12385 12385 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.604669 125.938773 26.604669 100.334104 63.4693865 1.8025643 0.048142 91 41 SH13513 13513 MT COX1 intronic 23.844669 105.747208 23.844669 82.902539 53.373604 1.727326529 0.048131 34 56 SH2438 2438 Phe5 5' flank 114.006612 226.413844 170.210228 2.230985653 0.048122 17 20 SH2527 2527 Pro1 3' flank 25.00865 91.156516 58.082583 1.764045922 0.048094 141 59 SH10501 10501 RUF8 RUF8 431 450 24.760917 89.394951 57.077934 1.756468245 0.048093 74 52 SH3592 3592 Val1 5' flank 24.573006 88.072417 56.3227115 1.750683555 0.048066 196 9 SH4214 4214 telomerase RNA telomerase 106 123 24.202154 85.438931 54.8205425 1.738943329 0.048038 8 90 SH6542 6542 snR46 3' 27.058032 102.508662 64.783347 1.811463382 0.048034 139 4 SH18349 18349 YML124C_13_23684_22049_INTRON_26_323 intron 36.999021 154.756791 36.999021 118.75777 77.8783955 1.891416995 0.048024 41 36 SH9591 9591 RUF3 RUF3 341 358 31.561043 111.302872 71.4319575 1.853892552 0.048005 25 75 SH21647 21647 copy of SH8562 24.997335 91.087201 58.042268 1.763744374 0.04797 104 28 SH21752 21752 copy of SH12973 23.294952 79.108855 51.2019035 1.709286107 0.047962 137 14 SH966 966 Gly1 3' flank 22.486052 73.942389 48.2142205 1.68317515 0.047958 11 88 SH19841 19841 Negative Control 29.430859 107.988226 68.7095425 1.837017057 0.047943 44 65 SH2479 2479 Phe5 3' flank 33.501693 113.97621 73.7389515 1.867696958 0.047938 167 95 SH12745 12745 MT COX1 COX1ai1 132.845927 384.294685 132.845927 252.448758 192.6473425 2.284763022 0.047897 48 102 SH10231 10231 RUF6 RUF6 1001 1020 24.870516 90.190718 57.530617 1.759899032 0.047893 190 73 SH21174 21174 YNL312W spliced 27.365858 103.89794 65.631899 1.81711497 0.047832 98 6 SH20663 20663 YIL052C spliced 43.512543 127.94407 85.7283065 1.933124245 0.047823 179 28 SH5234 5234 snR30 snR30 21 36 40.150973 123.242573 81.696773 1.912204902 0.047759 210 18 SH13230 13230 MT COX1 COX1-ai4 23.512232 103.130043 23.512232 80.617811 52.0650215 1.716546052 0.047753 199 88 SH7774 7774 snoRNA cluster1 intergenic 125.976708 368.001134 125.976708 243.024426 184.500567 2.265997705 0.047747 157 85 SH9040 9040 snR17a / U3a 486-490 + 3' 486 25.429583 94.22221 59.8258965 1.776889215 0.047743 170 101 SH16652 16652 YFR031C-A_6_221405_220494_INTRON_5_151 intron 24.430506 110.531359 24.430506 87.100853 55.7656795 1.746366998 0.047743 42 21 SH1049 1049 Gly3 5' flank 29.189072 107.527328 68.3582 1.834790618 0.047739 188 9 SH9205 9205 snR7 U5 RNA 3' 24.221459 85.603737 54.912598 1.739671991 0.047734 114 2 SH16307 16307 YDR450W_4_1359912_1360787_INTRON_48_482 intron 24.568343 111.63915 24.568343 88.070807 56.319575 1.750659369 0.047721 91 101 SH14869 14869 MT tRNA Ser2; tRNA Arg2 3' 21.979337 91.815542 21.979337 70.836205 46.407771 1.666590709 0.047704 183 26 SH3720 3720 Val3 3' flank 23.524241 80.705225 52.114733 1.716960517 0.047703 129 19 SH2449 2449 Phe5 tRNA 16 28 77.810328 175.490801 126.6505645 2.10260713 0.047698 19 92 SH20550 20550 YGR225W spliced 23.904069 83.357779 53.630924 1.729415279 0.047697 181 78 SH8085 8085 snoRNA cluster 2 3' 22.750011 97.38293 22.750011 75.632919 49.191465 1.691889757 0.047659 211 8 SH17577 17577 YJL191W_10_73786_74610_INTRON_11_418 intron 30.202896 138.607829 30.202896 109.404933 69.8039145 1.843879778 0.047638 2 48 SH946 946 Gly1 5' flank 24.213262 85.555585 54.8844235 1.739449107 0.047619 55 55 SH5834 5834 snR35 snR35 356 374 25.156866 92.264795 58.7108305 1.768718224 0.047605 133 81 SH2128 2128 Met1 tRNA 26 42 27.714114 104.612078 66.163096 1.820615819 0.047591 142 45 SH20590 20590 YHR021C spliced 23.213822 78.612771 50.9132965 1.706831217 0.047588 90 30 SH20684 20684 YIL111W spliced 26.918032 101.877199 64.3976155 1.808869787 0.047553 43 19 SH6793 6793 snR50 3' 22.56998 74.501566 48.535773 1.686061951 0.047548 150 88 SH15987 15987 YDL136W_4_217600_218367_INTRON_4_408 intron 23.335706 101.755037 23.335706 79.419331 51.3775185 1.710773124 0.047529 63 70 SH2304 2304 Phe2 3' flank 23.102512 77.898717 50.5006145 1.703296663 0.047528 145 102 SH861 861 Glu2 71-72 + 3' flank 71 23.632486 81.471629 52.5520575 1.720589724 0.047527 97 66 SH16986 16986 YGR118W_7_726968_727725_INTRON_66_385 intron 26.86834 127.510385 26.86834 101.642045 64.2551925 1.807908229 0.047522 26 91 SH7069 7069 snR62 3' 27.102936 102.765327 64.9341315 1.812473036 0.047518 183 49 SH16196 16196 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 23.158174 100.417052 23.158174 78.258878 50.708526 1.705080987 0.047514 35 50 SH6962 6962 snR58 3' 24.318658 86.318992 55.318825 1.742872947 0.047508 54 46 SH1676 1676 Leu6 5' flank 24.103466 84.784141 54.4438035 1.735948458 0.047508 150 18 SH480 480 Asp2 5' flank 32.656325 112.840989 72.748657 1.86182498 0.047493 106 50 SH3406 3406 Thr4 3' flank 23.999349 84.049675 54.024512 1.732590853 0.047472 87 56 SH11664 11664 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5206 5219 34.502165 115.393884 74.9480245 1.87476019 0.047459 97 22 SH13307 13307 MT COX1 COX1-ai5a 24.017719 107.199175 24.017719 84.181456 54.0995875 1.733193954 0.04745 83 21 SH15187 15187 MT COX3 cox3 24.88408 114.21353 24.88408 90.32945 57.606765 1.760473487 0.047437 189 11 SH19893 19893 snR17A spliced 26.319437 99.034115 62.676776 1.797106649 0.0474 212 49 SH15578 15578 YBR084C-A_2_415219_414144_INTRON_3_508 intron 24.176235 108.487647 24.176235 85.311412 54.7438235 1.738335127 0.047398 40 9 SH14894 14894 MT tRNA Ile 5' 24.622924 112.10806 24.622924 88.485136 56.55403 1.752463558 0.047387 200 38 SH13816 13816 MT COB Cytbi2 24.443494 110.670515 24.443494 87.227021 55.8352575 1.746908523 0.047371 185 71 SH7825 7825 snoRNA cluster1 intergenic 25.621195 120.277567 25.621195 95.656372 60.6387835 1.78275048 0.047361 121 68 SH20199 20199 YDR025W spliced 29.550092 108.256598 68.903345 1.838240306 0.047316 33 95 SH4755 4755 snR5 5' 24.604447 88.36385 56.4841485 1.751926586 0.047289 184 44 SH8832 8832 LSR1 / U2 RNA U2 801 817 135.646598 256.386799 196.0166985 2.29229307 0.047276 121 84 SH4152 4152 SRP RNA SRP RNA 651 667 52.754134 140.777964 96.766049 1.985723009 0.047265 57 42 SH53 53 Ala2 5' flank 25.432953 94.294694 59.8638235 1.777164452 0.047247 38 38 SH19437 19437 YPR187W_16_911252_911795_INTRON_21_96 5' exon 41.617477 165.959032 41.617477 125.341555 83.479516 1.921579922 0.047222 34 19 SH21787 21787 copy of SH14442 24.011618 84.158897 54.0852575 1.733078902 0.047216 151 44 SH10289 10289 RUF7 RUF7 56 77 27.113554 102.842169 64.9778615 1.812765414 0.047196 93 6 SH6207 6207 snR40 96-97 + 3' 96 23.260279 78.946261 51.10327 1.708448691 0.04718 10 83 SH1398 1398 Leu1 tRNA-intron/exon 61 76 46.975268 132.801653 89.8884605 1.953703942 0.047179 194 70 SH15995 15995 YDL136W_4_217600_218367_INTRON_4_408 3' exon 99.424063 304.452773 99.424063 206.02871 152.7263865 2.183914076 0.047167 151 79 SH17839 17839 YKR094C_11_618384_617630_INTRON_9_376 intron 25.410852 118.55316 25.410852 94.142308 59.77658 1.776531064 0.047162 98 104 SH12546 12546 MT_ORF6 + ORF7 (hypothetical) 3' 24.346817 109.899946 24.346817 86.553129 55.449973 1.743901339 0.047152 156 72 SH21492 21492 copy of SH2040 28.843571 106.88301 67.8632905 1.831634914 0.047137 20 94 SH10945 10945 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1611 1624 39.15824 121.89466 80.52645 1.905938554 0.047136 69 77 SH12663 12663 MT_15S MT_15S 61.847378 214.158745 61.847378 153.311367 107.5793725 2.031729007 0.047132 79 69 SH16275 16275 YDR447C_4_1355542_1354818_INTRON_4_317 intron 27.965309 132.107108 27.965309 105.141799 66.553554 1.823171252 0.047112 28 76 SH2400 2400 Phe4 tRNA-intron/exon 51 66 2029.161695 2596.883911 2313.022803 3.364179914 0.047097 130 68 SH13944 13944 MT COB Cytbi3 25.752322 121.121284 25.752322 96.368962 61.060642 1.785761366 0.04708 118 74 SH12694 12694 MT ORF 8 (hypothetical) 5' / ORF8 23.153871 100.419961 23.153871 78.26609 50.7099805 1.705093444 0.047071 190 77 SH21280 21280 YPL129W spliced 35.470756 116.740446 76.105601 1.88141662 0.047068 203 11 SH5180 5180 snR13 snR13 56 72 23.886458 83.293387 53.5899225 1.729083129 0.047014 212 56 SH13668 13668 MT ATP6 ATP6 23.917086 106.428296 23.917086 83.51121 53.714148 1.730088691 0.04699 17 91 SH8007 8007 snoRNA cluster 2 intergenic 23.626331 104.103023 23.626331 81.476692 52.5515115 1.720585212 0.046965 13 75 SH14461 14461 MT 21S rRNA 21S rRNA3 27.246316 129.74671 27.246316 103.500394 65.373355 1.815400774 0.046933 63 46 SH14848 14848 MT tRNA Asp 3' 23.115681 100.147497 23.115681 78.031816 50.5737485 1.703925145 0.046915 133 18 SH18763 18763 YNL162W_14_331319_332151_INTRON_5_516 3' exon 223.155217 598.382071 223.155217 376.226854 299.6910355 2.476673752 0.04685 14 4 SH5549 5549 snR33 snR33 31 50 25.077413 91.767833 58.422623 1.766581052 0.046825 189 32 SH86 86 Ala2 tRNA + 3' flank 66 3' flank 24.399835 86.969106 55.6844705 1.745734094 0.046766 131 33 SH11865 11865 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6211 6226 29.272771 107.749744 68.5112575 1.835761939 0.046714 130 85 SH1829 1829 Leu8 3' flank 26.966394 102.17701 64.571702 1.810042234 0.046699 85 73 SH5193 5193 snR13 121-124 + 3' 121 24.395141 86.942645 55.668893 1.745612585 0.046686 82 18 SH2221 2221 Phe1 5' flank 25.943883 97.306728 61.6253055 1.789759085 0.046676 131 91 SH9509 9509 RUF3 5' 26.18084 98.431386 62.306113 1.794530658 0.046675 154 16 SH21793 21793 copy of SH14653 30.461109 109.824753 70.142931 1.845983909 0.046672 186 37 SH6455 6455 snR45 snR45 121 140 24.160344 85.264072 54.712208 1.738084242 0.04666 116 90 SH466 466 Asp1 3' flank 34.35817 115.241576 74.799873 1.87390086 0.046636 62 64 SH5191 5191 snR13 111-124 + 3' 111 23.551131 80.984896 52.2680135 1.718235995 0.0466 23 47 SH14241 14241 MT tRNA Ser 5'/tRNA 25.368138 118.257926 25.368138 93.889788 59.628963 1.775457257 0.046566 209 104 SH3208 3208 Ser5 3' flank 25.817972 96.718937 61.2684545 1.787236925 0.046561 157 9 SH8735 8735 LSR1 / U2 RNA U2 316 337 22.91825 76.79451 49.85638 1.697720742 0.046509 199 48 SH21575 21575 copy of SH5621 28.808826 106.850505 67.8296655 1.831419675 0.046503 145 32 SH13974 13974 MT COB Cytbi3 23.528179 103.3628 23.528179 80.834621 52.1814 1.717515727 0.046494 165 82 SH3399 3399 Thr4 3' flank 22.584156 74.670448 48.627302 1.686880174 0.046493 43 42 SH12016 12016 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6966 6989 24.855032 90.211351 57.5331915 1.759918466 0.04648 163 96 SH327 327 Arg5 5' flank 23.910911 83.51307 53.7119905 1.730071247 0.04647 157 12 SH15174 15174 MT COX3 5' 22.721391 97.263242 22.721391 75.541851 49.131621 1.691361093 0.046469 21 100 SH8949 8949 snR17a / U3a U3a 31 50 26.440914 99.686472 63.063693 1.799779399 0.04645 73 100 SH17934 17934 YLR093C_12_327416_326514_INTRON_17_157 intron 35.100924 150.373347 35.100924 116.272423 75.6866735 1.879019418 0.04645 100 21 SH12128 12128 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7526 7544 23.600957 81.345028 52.4729925 1.719935832 0.046437 23 96 SH17828 17828 YKR094C_11_618384_617630_INTRON_9_376 5' exon 24.387996 110.302512 24.387996 86.914516 55.651256 1.74547497 0.04643 71 71 SH12418 12418 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 22.979393 99.17306 22.979393 77.193667 50.08653 1.699720945 0.046417 176 73 SH16743 16743 YGL076C_7_365994_364333_INTRON_565_1032 intron 23.895902 106.310088 23.895902 83.414186 53.655044 1.729610555 0.046391 111 87 SH347 347 Arg5 71-72 + 3' flank 71 3' flank 23.137572 78.217957 50.6777645 1.704817449 0.046347 13 17 SH18490 18490 YMR194W_13_651144_651909_INTRON_17_479 intron 26.623127 126.187983 26.623127 100.564856 63.5939915 1.803416084 0.046332 65 11 SH829 829 Glu2 5' flank 26.2697 98.881167 62.5754335 1.796403867 0.046323 185 100 SH7650 7650 snoRNA cluster1 5' 24.391897 110.344801 24.391897 86.952904 55.6724005 1.745639948 0.046317 39 91 SH19547 19547 CBP1 2.2 27.86555 104.987764 66.426657 1.822342397 0.046295 116 63 SH17148 17148 YHR012W_8_129473_130440_INTRON_49_167 5' exon 27.223642 129.668439 27.223642 103.444797 65.3342195 1.815140707 0.046277 35 35 SH12949 12949 MT COX1 COX1ai2 27.038001 128.593114 27.038001 102.555113 64.796557 1.81155193 0.046264 100 97 SH372 372 Asn1 5' flank 23.279144 79.142968 51.211056 1.709363731 0.046249 61 60 SH18799 18799 YNL301C_14_64561_63569_INTRON_113_544 intron 24.006764 107.217814 24.006764 84.21105 54.108907 1.733268761 0.046234 139 90 SH7321 7321 snR66 3' 22.977953 77.201206 50.0895795 1.699747386 0.046202 69 37 SH13591 13591 MT ATP8/AAP1 5' 22.975134 99.158765 22.975134 77.183631 50.0793825 1.699658965 0.046195 92 25 SH13918 13918 MT COB Cytbi3 24.62964 112.274501 24.62964 88.644861 56.6372505 1.753102162 0.04615 28 11 SH18826 18826 YNL302C_14_62942_61957_INTRON_21_571 intron 57.640825 204.227347 57.640825 147.586522 102.6136735 2.011205235 0.04614 190 24 SH2549 2549 Pro2 5' flank 28.188954 105.643725 66.9163395 1.825532176 0.046117 82 41 SH20444 20444 YGL103W spliced 64.502892 157.046475 110.7746835 2.044440518 0.046115 17 27 SH8963 8963 snR17a / U3a U3a 101 115 104.592532 213.476858 159.034695 2.20149188 0.046106 90 35 SH21472 21472 copy of SH1242 28.619869 106.499903 67.559886 1.829688908 0.046104 146 34 SH1935 1935 Lys1 3' flank 23.457607 80.389895 51.923751 1.715366059 0.045972 198 58 SH15485 15485 YBL092W_2_45639_46364_INTRON_1_333 intron 28.631634 134.164393 28.631634 106.532759 67.5821965 1.829832303 0.045935 123 89 SH3565 3565 Tyr2 3' flank 33.557429 114.170392 73.8639105 1.868432296 0.045859 205 39 SH15390 15390 YBL040C_2_142830_142074_INTRON_23_119 intron 31.294712 141.341853 31.294712 111.047141 71.1709265 1.852302619 0.045838 25 76 SH12670 12670 MT_15S 3' 35.496505 151.343521 35.496505 116.847016 76.1717605 1.881793993 0.045815 160 60 SH5967 5967 snR36 snR36 291 308 26.743274 101.180498 63.961886 1.805921261 0.045807 203 27 SH9817 9817 RUF4 3' 25.926495 97.291214 61.6088545 1.789643134 0.045799 13 88 SH6897 6897 snR56 3' 25.498588 94.91345 60.206019 1.779639911 0.045796 144 72 SH7425 7425 snR69 snR69 26 43 32.893688 113.257446 73.075567 1.863772194 0.045791 42 18 SH11898 11898 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6376 6391 29892.36645 27607.33526 28749.85086 4.458635596 0.045771 25 33 SH12992 12992 MT COX1 COX1ai2 22.938393 98.919522 22.938393 76.981129 49.959761 1.698620352 0.045767 137 3 SH19887 19887 Positive Control 3 25.108559 92.091437 58.599998 1.767897601 0.045765 206 89 SH12588 12588 MT_15S MT_15S 24.499974 111.269822 24.499974 87.769848 56.134911 1.749233038 0.045734 56 75 SH13344 13344 MT COX1 COX1-ai5a 23.744701 105.155847 23.744701 82.411146 53.0779235 1.724913924 0.045707 124 23 SH52 52 Ala1 3' flank 26.404441 99.572155 62.988298 1.799259873 0.045689 176 103 SH21075 21075 YMR230W spliced 25.404371 94.240516 59.8224435 1.776864148 0.045659 99 22 SH10789 10789 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 831 851 31.721248 111.653034 71.687141 1.85544126 0.045645 18 70 SH2956 2956 Ser1 tRNA 11 25 3804.512966 4513.923141 4159.218054 3.61901169 0.045633 29 54 SH2080 2080 Lys4 tRNA 66 80 428.647595 655.912621 542.280108 2.734223674 0.045612 129 87 SH10592 10592 RUF8 RUF8 886 902 26.501279 100.040368 63.2708235 1.801203487 0.045607 86 4 SH2520 2520 Pro1 3' flank 29.694984 108.63776 69.166372 1.839894996 0.045593 27 31 SH8470 8470 snoRNA cluster 5 3' 26.973483 128.277257 26.973483 102.303774 64.6386285 1.810492133 0.045542 61 34 SH14465 14465 MT 21S rRNA 21S rRNA3 133.694671 386.67968 133.694671 253.985009 193.83984 2.287443043 0.045462 149 41 SH19211 19211 YPL081W_16_404945_406039_INTRON_8_508 intron 25.122785 116.346042 25.122785 92.223257 58.673021 1.76843845 0.045453 148 4 SH6388 6388 snR43 snR43 181 197 24.74738 89.541967 57.1446735 1.756975756 0.045447 128 103 SH10318 10318 RUF7 RUF7 201 216 27.205403 103.425412 65.3154075 1.815015641 0.045436 124 54 SH16529 16529 YER131W_5_423587_424307_INTRON_1_361 intron 25.519989 119.626378 25.519989 95.106389 60.313189 1.780412292 0.04542 202 84 SH4167 4167 SRP RNA 3' 26.542775 100.25317 63.3979725 1.802075369 0.045419 110 104 SH18090 18090 YLR367W_12_855877_857316_INTRON_698_1180 5' exon 23.961034 106.921981 23.961034 83.960947 53.9609905 1.732079913 0.045398 70 25 SH1108 1108 Gly4 tRNA 16 31 25.346398 93.849605 59.5980015 1.775231697 0.045345 61 36 SH5458 5458 snR32 5' 24.778627 89.774907 57.276767 1.757978496 0.045325 40 33 SH20825 20825 YKR057W spliced 25.37358 94.049878 59.711729 1.776059647 0.045315 176 32 SH17950 17950 YLR128W_12_398531_399434_INTRON_4_97 3' exon 34.779651 149.678451 34.779651 115.8988 75.3392255 1.877021151 0.045283 16 6 SH12028 12028 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7026 7046 25.475917 94.800268 60.1380925 1.779149649 0.04526 155 3 SH17832 17832 YKR094C_11_618384_617630_INTRON_9_376 intron 26.834308 127.495196 26.834308 101.660888 64.247598 1.807856896 0.045244 134 101 SH554 554 Cys1 71-72 + 3' flank 71 3' flank 22.1182 71.851075 46.9846375 1.67195588 0.045243 167 5 SH15181 15181 MT COX3 cox3 24.681136 112.772496 24.681136 89.09136 56.886248 1.75500729 0.045243 121 2 SH7523 7523 snR79 5' 25.034642 91.610284 58.322463 1.765835856 0.045238 198 25 SH19678 19678 SIR1 2.4 32.670616 112.986504 72.82856 1.862301723 0.045185 166 45 SH19195 19195 YPL081W_16_404945_406039_INTRON_8_508 intron 24.410123 110.603974 24.410123 87.193851 55.801987 1.746649664 0.045113 199 6 SH19515 19515 ACT1 30.789802 110.374578 70.58219 1.848695129 0.045113 55 102 SH18800 18800 YNL301C_14_64561_63569_INTRON_113_544 intron 25.50831 119.56533 25.50831 95.05702 60.282665 1.780192444 0.045051 210 64 SH12776 12776 MT COX1 COX1ai1 23.958925 106.935684 23.958925 83.976759 53.967842 1.732135052 0.045048 197 87 SH5074 5074 snR11 5' 22.340167 73.243705 47.791936 1.679354624 0.045039 99 31 SH7467 7467 snR71 5' 23.943844 83.871376 53.90761 1.731650078 0.045034 68 44 SH12167 12167 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7721 7738 38.987042 121.785078 80.38606 1.905180743 0.044989 124 27 SH16659 16659 YFR032C-A_6_223758_223245_INTRON_1_331 intron 28.455022 133.691987 28.455022 106.236965 67.3459935 1.828311764 0.044976 26 15 SH11187 11187 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2821 2839 24.274311 86.231873 55.253092 1.742356586 0.044952 199 27 SH13047 13047 MT COX1 COX1ai2 24.062429 107.785714 24.062429 84.723285 54.392857 1.735541871 0.044906 117 21 SH164 164 Arg2 5' flank 24.404817 87.174716 55.7897665 1.746554544 0.044903 203 102 SH17425 17425 YIL111W_9_155219_155762_INTRON_2_89 3' exon 140.304122 402.420647 140.304122 263.116525 201.7103235 2.304728126 0.044901 93 21 SH18808 18808 YNL301C_14_64561_63569_INTRON_113_544 3' exon 24.198833 108.900605 24.198833 85.701772 54.9503025 1.739970088 0.044837 102 32 SH58 58 Ala2 5' flank 25.562961 95.480016 60.5214885 1.781909601 0.044812 28 16 SH17822 17822 YKR057W_11_551293_551878_INTRON_25_346 intron 61.968146 214.639957 61.968146 153.671811 107.8199785 2.032699241 0.044807 32 58 SH16578 16578 YER179W_5_548416_549512_INTRON_133_224 intron 22.78892 97.888429 22.78892 76.099509 49.4442145 1.694115482 0.0448 118 37 SH14895 14895 MT tRNA Ile 5' / tRNA 25.932389 122.329986 25.932389 97.397597 61.664993 1.790038687 0.044772 19 43 SH14824 14824 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly 29.891771 137.959721 29.891771 109.06795 69.4798605 1.841858938 0.044762 97 39 SH18609 18609 YNL069C_14_494998_493953_INTRON_29_477 intron 27.819076 131.801912 27.819076 104.982836 66.400956 1.822174332 0.044712 110 62 SH2094 2094 Lys4 3' flank 22.793612 76.136958 49.465285 1.694300516 0.044703 83 70 SH4578 4578 U3b (snR17b) U3b 446 461 242.977097 403.800716 323.3889065 2.509725118 0.044693 142 65 SH613 613 Gln1 3' flank 22.385599 73.555789 47.970694 1.680976002 0.044673 19 73 SH15655 15655 YBR189W_2_604466_605466_INTRON_8_420 intron 26.862385 127.704551 26.862385 101.842166 64.3522755 1.808563908 0.044658 204 71 SH13794 13794 MT COB intronic 22.501755 95.790328 22.501755 74.288573 48.395164 1.684801966 0.044651 51 31 SH9855 9855 RUF5-1 RUF5-1 81 98 24.54151 88.159693 56.3506015 1.750898556 0.04465 206 62 SH21785 21785 copy of SH14440 48.479864 135.049954 91.764909 1.962676638 0.044613 155 10 SH9094 9094 snR14 / U4 RNA U4 86 98 50.286275 137.560813 93.923544 1.972774471 0.044597 32 69 SH4733 4733 snR4 3' 25.509969 95.115547 60.312758 1.780409188 0.044575 176 34 SH6588 6588 snR47 snR47 46 67 374.711046 584.10904 479.410043 2.680707128 0.044574 116 57 SH14035 14035 MT COB Cytbi4 24.034772 107.595656 24.034772 84.560884 54.297828 1.734782457 0.044521 174 42 SH13910 13910 MT COB Cytbi3 25.00278 115.455924 25.00278 91.453144 58.227962 1.76513159 0.044478 207 56 SH12018 12018 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6976 6996 81.81408 181.481657 131.6478685 2.119413832 0.044474 49 2 SH12243 12243 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.765938 113.532255 24.765938 89.766317 57.2661275 1.757897816 0.04444 55 86 SH13080 13080 MT COX1 COX1ai3 26.073607 123.172037 26.073607 98.09843 62.0860185 1.79299381 0.044383 112 56 SH10054 10054 RUF6 RUF6 116 132 24.820515 90.162627 57.491571 1.759604176 0.044352 191 95 SH20518 20518 YGR034W spliced 27.865291 105.096145 66.480718 1.822695701 0.044342 95 65 SH19440 19440 YPR187W_16_911252_911795_INTRON_21_96 intron 25.201064 117.094852 25.201064 92.893788 59.047426 1.771200971 0.044336 67 38 SH14816 14816 "MT tRNAs (Lys, Arg1, Gly)" tRNA / intergenic 24.77124 113.585341 24.77124 89.814101 57.2926705 1.758099066 0.04433 43 62 SH13481 13481 MT COX1 intronic 23.27425 101.541927 23.27425 79.267677 51.2709635 1.709871479 0.04429 169 18 SH15112 15112 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF3 exon3 23.623767 104.3114 23.623767 81.687633 52.6557 1.721445391 0.044284 139 91 SH1345 1345 Ile3 tRNA 106 120 28.610759 106.5849 67.5978295 1.829932751 0.044282 74 47 SH16059 16059 YDL219W_4_65243_65766_INTRON_66_136 intron 25.613306 120.52026 25.613306 95.906954 60.76013 1.783618694 0.044223 6 60 SH12946 12946 MT COX1 COX1ai2 24.598733 112.200852 24.598733 88.602119 56.600426 1.7528197 0.044221 150 93 SH6530 6530 snR46 snR46 141 162 25.202403 92.91582 59.0591115 1.771286909 0.044206 113 103 SH16406 16406 YER056C-A_5_270183_269421_INTRON_38_434 intron 25.48471 119.455929 25.48471 94.971219 60.2279645 1.779798186 0.044163 9 58 SH7461 7461 snR71 5' 24.797106 90.017929 57.4075175 1.758968767 0.044115 72 59 SH14993 14993 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 24.933897 114.931503 24.933897 90.997606 57.9657515 1.763171471 0.044075 151 4 SH10213 10213 RUF6 RUF6 911 928 24.94168 91.053253 57.9974665 1.763409023 0.044075 86 21 SH5391 5391 snR31 snR31 21 37 25.865819 97.135155 61.500487 1.788878555 0.044071 176 92 SH18461 18461 YMR143W_13_551927_552902_INTRON_25_568 intron 24.162041 108.669584 24.162041 85.507543 54.834792 1.7390562 0.04407 161 51 SH59 59 Ala2 5' flank 26.31557 99.276923 62.7962465 1.797933686 0.044042 174 20 SH17899 17899 YLR061W_12_263195_263949_INTRON_13_401 exon/intron 26.156258 123.674995 26.156258 98.518737 62.3374975 1.794749364 0.044032 30 34 SH17767 17767 YKL180W_11_109271_110131_INTRON_310_615 5' exon 25.009636 115.554517 25.009636 91.544881 58.2772585 1.765499113 0.044025 112 5 SH15095 15095 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 24.806847 113.906546 24.806847 90.099699 57.453273 1.759314775 0.04398 110 15 SH13906 13906 MT COB exon3/cytbi3 25.425317 118.982818 25.425317 94.557501 59.991409 1.778089062 0.04396 81 55 SH6853 6853 snR52 3' 26.069673 98.115384 62.0925285 1.793039345 0.043919 187 98 SH19462 19462 CYC1 26.200329 98.737631 62.46898 1.795664415 0.043915 142 21 SH5551 5551 snR33 snR33 41 62 25.085628 92.101748 58.593688 1.767850834 0.04391 37 48 SH5271 5271 snR30 snR30 206 220 27.236847 103.703624 65.4702355 1.816043903 0.043873 17 65 SH15426 15426 YBL072C_2_89435_88518_INTRON_1_308 intron 26.607581 126.293659 26.607581 100.686078 63.6468295 1.803776775 0.043856 156 10 SH14988 14988 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 24.998182 115.482248 24.998182 91.484066 58.241124 1.765229748 0.043798 107 7 SH14721 14721 MT tRNA cys; tRNA his tRNA Cys 24.509138 111.519965 24.509138 88.010827 56.2599825 1.750199593 0.043776 13 68 SH15926 15926 YDL108W_4_267697_268698_INTRON_29_109 intron 22.715715 97.427736 22.715715 75.712021 49.213868 1.6920875 0.043765 36 75 SH792 792 Glu1 5' flank 29.76051 108.870939 69.3157245 1.840831767 0.043761 145 103 SH8882 8882 LSR1 / U2 RNA U2 1051 1065 52.507286 140.705241 96.6062635 1.985005285 0.043671 141 97 SH6089 6089 snR37 snR37 361 377 24.838682 90.357813 57.5982475 1.76040927 0.043642 206 93 SH17573 17573 YJL189W_10_75932_76473_INTRON_7_392 3' exon 27.186113 129.66578 27.186113 103.479667 65.33289 1.81513187 0.043625 165 13 SH8341 8341 snoRNA cluster4 snR53 26.390642 125.059162 26.390642 99.66852 63.029581 1.79954442 0.043614 74 64 SH4478 4478 U3b (snR17b) 5' 24.418868 87.391546 55.905207 1.74745226 0.043608 7 44 SH6426 6426 snR45 5' 25.995334 97.789375 61.8923545 1.791637004 0.043561 79 99 SH7222 7222 snR64 3' 25.613171 95.976343 60.794757 1.783866127 0.043508 169 85 SH20626 20626 YHR101C spliced 24.260413 86.262815 55.261614 1.742423565 0.043504 76 10 SH7179 7179 snR64 5' 25.250563 93.332185 59.291374 1.772991515 0.043496 180 12 SH19353 19353 YPL249C-A_16_76239_75699_INTRON_17_254 intron 23.30449 101.845022 23.30449 79.540532 51.422511 1.71115328 0.043489 16 96 SH10991 10991 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1841 1860 12730.95601 13048.40902 12889.68251 4.11024222 0.043459 122 76 SH1990 1990 Lys2 3' flank 941.108389 1311.14484 1126.126615 3.051587223 0.043457 171 65 SH11679 11679 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5281 5294 93.09587 197.488916 145.292393 2.162242877 0.04345 29 77 SH1975 1975 Lys2 3' flank 23.373044 80.018421 51.6957325 1.713454693 0.04343 168 44 SH18566 18566 YNL012W_14_609682_611661_INTRON_106_189 5' exon 57.643124 204.445892 57.643124 147.802768 102.722946 2.011667466 0.043423 194 9 SH13326 13326 MT COX1 COX1-ai5a 24.240065 109.364628 24.240065 86.124563 55.182314 1.741799908 0.043418 200 3 SH14660 14660 MT 21S rRNA 21S rRNA4 24.091477 108.154789 24.091477 85.063312 54.5773945 1.737012799 0.043406 181 10 SH4883 4883 snR8 3' 23.588306 81.515271 52.5517885 1.720587501 0.043404 32 19 SH7091 7091 snR63 5' 23.701336 82.306741 53.0040385 1.724308961 0.043392 70 92 SH7535 7535 snR79 snR79 16 33 28.276837 105.972562 67.1246995 1.826882354 0.04338 187 92 SH7657 7657 snoRNA cluster1 5' 24.554641 111.924372 24.554641 88.369731 56.462186 1.751757688 0.043353 116 75 SH926 926 Glu3 3' flank 26.028657 97.964082 61.9963695 1.792366258 0.04335 172 9 SH8359 8359 snoRNA cluster4 3' 24.779118 113.740906 24.779118 89.961788 57.370453 1.758688279 0.043336 20 85 SH7544 7544 snR79 snR79 61 77 28.460834 106.341715 67.4012745 1.828668109 0.043324 152 42 SH388 388 Asn1 21-33 21 33 35.739169 117.320263 76.529716 1.883830102 0.043293 101 7 SH17714 17714 YKL081W_11_282533_284097_INTRON_206_531 intron 29.011182 135.443224 29.011182 107.432042 68.221612 1.833921977 0.043287 100 65 SH15324 15324 YAL003W_1_142172_143158_INTRON_81_446 intron 22.817462 98.219156 22.817462 76.401694 49.609578 1.695565533 0.043243 103 31 SH18075 18075 YLR344W_12_819312_820142_INTRON_20_466 intron 27.423839 130.693356 27.423839 104.269517 65.846678 1.818533869 0.043226 174 10 SH6965 6965 snR60 5' 24.889459 90.759353 57.824406 1.76211118 0.043222 143 53 SH7709 7709 snoRNA cluster1 snR77 40.979988 164.672756 40.979988 124.692768 82.836378 1.918221101 0.043213 129 99 SH2633 2633 Pro3 3' flank 23.655922 82.005137 52.8305295 1.722884963 0.0432 112 54 SH20180 20180 YDL189W spliced 24.86748 90.612074 57.739777 1.761475102 0.043117 195 12 SH16590 16590 YFL034C-A_6_64931_64242_INTRON_13_333 intron 26.325267 124.721904 26.325267 99.396637 62.860952 1.798380954 0.0431 140 81 SH3850 3850 RNaseP RNaseP 216 228 26.5197 100.32578 63.42274 1.802245001 0.043095 183 21 SH857 857 Glu2 tRNA 51 63 28.567215 106.565825 67.56652 1.829731551 0.043094 45 78 SH19140 19140 YPL075W_16_412249_415357_INTRON_9_759 intron 24.031853 107.698414 24.031853 84.666561 54.349207 1.735193212 0.043093 198 75 SH17631 17631 YJR094W-A_10_608000_608553_INTRON_3_277 intron 29.496457 136.891432 29.496457 108.394975 68.945716 1.838507286 0.04309 12 47 SH318 318 Arg5 5' flank 59.647584 150.568872 105.108228 2.021636714 0.04304 68 2 SH3349 3349 Thr3 3' flank 23.300704 79.551927 51.4263155 1.71118541 0.043038 126 5 SH10348 10348 RUF7 RUF7 351 368 24.933713 91.093621 58.013667 1.763530318 0.043033 36 96 SH9321 9321 RUF1 RUF1 181 200 24.161042 85.594046 54.877544 1.739394667 0.043024 170 88 SH18021 18021 YLR306W_12_744151_744851_INTRON_4_137 intron 23.919956 106.800332 23.919956 83.880376 53.900166 1.731590103 0.043005 82 81 SH18179 18179 YLR448W_12_1028848_1029762_INTRON_16_399 intron 29.642339 137.327192 29.642339 108.684853 69.163596 1.839877565 0.042999 184 86 SH2615 2615 Pro3 tRNA-exon/intron 26 38 24.46799 87.799089 56.1335395 1.749222428 0.042913 29 25 SH12070 12070 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7236 7254 24.035514 84.709097 54.3723055 1.735377748 0.042907 162 57 SH11454 11454 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4156 4171 31913.3823 29298.75806 30606.07018 4.48580757 0.042861 90 18 SH10840 10840 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1086 1106 629.854584 919.677907 774.7662455 2.889170691 0.042841 178 71 SH1673 1673 Leu6 5' flank 25.985729 97.800419 61.893074 1.791642053 0.042822 133 34 SH9434 9434 RUF2 RUF2 11 29 27.528692 104.504235 66.0164635 1.819652255 0.042811 50 43 SH11594 11594 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4856 4869 26.666021 101.048835 63.857428 1.805211422 0.042806 7 51 SH19659 19659 SIR1 2.2 27.973191 105.39873 66.6859605 1.824034411 0.042796 34 61 SH7782 7782 snoRNA cluster1 intergenic 23.067724 100.114424 23.067724 78.0467 50.557212 1.703783117 0.042792 182 99 SH16807 16807 YGL137W_7_249872_252741_INTRON_19_218 intron 24.653788 112.775633 24.653788 89.121845 56.8878165 1.755019265 0.042791 105 73 SH17597 17597 YJL191W_10_73786_74610_INTRON_11_418 3' exon 24.177054 108.906577 24.177054 85.729523 54.9532885 1.739993686 0.04279 95 25 SH7793 7793 snoRNA cluster1 snR75 28.559094 134.127258 28.559094 106.568164 67.563629 1.829712968 0.042768 168 17 SH5050 5050 snR10 3' 29.664031 108.741474 69.2027525 1.840123369 0.042751 101 10 SH1374 1374 Leu1 5' flank 26.772676 101.564574 64.168625 1.807322733 0.042748 73 40 SH21863 21863 copy of SH18013 23.468586 80.740654 52.10462 1.716876233 0.042713 198 87 SH6555 6555 snR46 3' 120.101135 235.619134 177.8601345 2.250078616 0.042687 160 26 SH19744 19744 Negative Control 31.094837 110.936004 71.0154205 1.851352663 0.042674 154 40 SH16841 16841 YGL178W_7_167356_170575_INTRON_4_643 intron 25.095803 116.389535 25.095803 92.293732 58.6947675 1.768599387 0.042656 170 91 SH14784 14784 MT ORF11; tRNA Leu; tRNA Gln 3' 23.60907 104.333913 23.60907 81.724843 52.6669565 1.721538222 0.042648 15 71 SH14976 14976 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 22.98345 99.498389 22.98345 77.514939 50.2491945 1.701129104 0.042635 120 101 SH5251 5251 snR30 snR30 106 122 23.999247 84.475599 54.237423 1.734299047 0.042632 100 103 SH1871 1871 Leu9 96-101 + 3' flank 96 21.334004 67.337872 44.335938 1.646755901 0.042593 190 64 SH17214 17214 YHR039C-A_8_187670_187164_INTRON_4_165 3' exon 28.734098 134.659925 28.734098 106.925827 67.8299625 1.831421577 0.042574 81 103 SH7344 7344 snR68 5' 21.316421 67.236364 44.2763925 1.646172229 0.042559 127 75 SH14733 14733 MT tRNA cys; tRNA his tRNA his 25.122544 116.619351 25.122544 92.496807 58.8096755 1.769448783 0.042548 53 27 SH16700 16700 YGL031C_7_438393_437938_INTRON_1_456 intron 30.631785 139.919483 30.631785 110.287698 70.4597415 1.847941046 0.042537 127 4 SH9748 9748 RUF4 RUF4 516 532 26.92796 102.327405 64.6276825 1.810418583 0.042527 170 12 SH6687 6687 snR49 5' 24.369753 87.138825 55.754289 1.746278282 0.042523 127 32 SH17361 17361 YIL052C_9_257061_256224_INTRON_38_509 intron 26.961622 128.45278 26.961622 102.491158 64.72639 1.811081386 0.042502 118 96 SH17882 17882 YLR048W_12_242233_243350_INTRON_91_449 intron 84.373707 268.635585 84.373707 185.261878 134.8177925 2.129747212 0.042491 117 56 SH14243 14243 MT tRNA Ser tRNA 25.765331 121.543836 25.765331 96.778505 61.271918 1.787261475 0.042488 159 59 SH4117 4117 SRP RNA SRP RNA 476 492 33.036567 113.633805 73.335186 1.865312398 0.042471 29 100 SH12975 12975 MT COX1 COX1ai2 24.431492 111.014785 24.431492 87.583293 56.0073925 1.748245354 0.042459 179 33 SH12531 12531 MT_ORF6 + ORF7 (hypothetical) ORF6/7 23.477404 103.303862 23.477404 80.826458 52.151931 1.717270393 0.042422 36 56 SH19906 19906 YAL001C spliced 42.682886 127.146335 84.9146105 1.928982422 0.042395 213 9 SH4205 4205 telomerase RNA telomerase 61 83 23.523273 81.152853 52.338063 1.718817646 0.042336 178 65 SH21110 21110 YNL069C spliced 26.103301 98.398421 62.250861 1.794145363 0.042324 40 32 SH13273 13273 MT COX1 Exon 5a 25.44261 119.286061 25.44261 94.843451 60.1430305 1.779185308 0.042316 6 82 SH18520 18520 YMR225C_13_721402_720959_INTRON_59_205 5' exon 22.912374 98.99715 22.912374 77.084776 49.998575 1.698957627 0.042284 39 73 SH5675 5675 snR34 snR34 296 313 25.223805 93.255046 59.2394255 1.772610838 0.042276 45 55 SH14454 14454 MT 21S rRNA 21S rRNA3 27.152387 129.579432 27.152387 103.427045 65.289716 1.814844779 0.042274 78 71 SH19101 19101 YOR312C_15_901173_900242_INTRON_2_427 intron 23.970067 107.275508 23.970067 84.305441 54.137754 1.733500234 0.042211 78 29 SH11213 11213 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2951 2964 31.883046 112.064558 71.973802 1.857174445 0.042193 83 89 SH5326 5326 snR30 snR30 481 493 2652.883673 3297.951007 2975.41734 3.47354789 0.042192 16 14 SH17307 17307 YHR203C_8_505526_504472_INTRON_15_283 intron 25.685203 121.107158 25.685203 96.421955 61.053579 1.785711128 0.042175 61 57 SH9535 9535 RUF3 RUF3 61 80 23.401246 80.319783 51.8605145 1.714836821 0.042164 63 39 SH9119 9119 snR14 / U4 RNA 3' 26.598793 100.778923 63.688858 1.804063462 0.042149 175 4 SH14703 14703 MT tRNA thr2 tRNA 25.593132 120.557018 25.593132 95.963886 60.778509 1.783750042 0.042139 148 80 SH17308 17308 YHR203C_8_505526_504472_INTRON_15_283 intron 27.493118 130.964816 27.493118 104.471698 65.982408 1.819428161 0.042103 29 5 SH8434 8434 snoRNA cluster 5 intergenic 24.892644 114.779633 24.892644 90.886989 57.8898165 1.762602173 0.042097 130 83 SH14868 14868 MT tRNA Ser2; tRNA Arg2 3' 24.187184 109.052447 24.187184 85.865263 55.0262235 1.740569708 0.042086 40 94 SH18381 18381 YMR116C_13_500687_499455_INTRON_538_810 intron 27.352831 130.542105 27.352831 104.189274 65.7710525 1.818034792 0.04208 39 68 SH17775 17775 YKL180W_11_109271_110131_INTRON_310_615 intron 24.470266 111.36202 24.470266 87.891754 56.18101 1.749589543 0.042062 49 31 SH15717 15717 YBR220C_2_663261_662457_INTRON_302_722 3' exon 24.82776 114.258569 24.82776 90.430809 57.6292845 1.760643228 0.042014 212 65 SH20906 20906 YLR316C spliced 26.063598 98.233871 62.1487345 1.79343229 0.042006 178 48 SH20051 20051 YBR191W spliced 47.981486 134.548854 91.26517 1.960305067 0.041998 113 86 SH1763 1763 Leu7 3' flank 24.733718 89.765691 57.2497045 1.757773249 0.041959 94 63 SH9737 9737 RUF4 RUF4 461 477 25.391804 94.508409 59.9501065 1.777789959 0.041946 204 43 SH134 134 Arg1 46-61 46 61 26.84031 101.954149 64.3972295 1.808867184 0.041933 92 98 SH21709 21709 copy of SH11289 47.173008 133.444256 90.308632 1.955729264 0.041822 14 24 SH11068 11068 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2226 2244 48.24855 134.928571 91.5885605 1.961841233 0.041812 192 80 SH21029 21029 YMR116C spliced 37.852285 120.365014 79.1086495 1.898223971 0.041778 94 46 SH12191 12191 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7841 7857 50.204664 137.649812 93.927238 1.972791552 0.041776 209 73 SH19506 19506 ACT1 34.467794 115.668454 75.068124 1.875455563 0.041764 55 38 SH16826 16826 YGL178W_7_167356_170575_INTRON_4_643 intron 25.722688 121.354007 25.722688 96.631319 61.1770035 1.786588201 0.04176 32 68 SH6814 6814 snR52 5' 27.606419 104.719598 66.1630085 1.820615245 0.041757 147 27 SH4572 4572 U3b (snR17b) U3b 416 431 253.662056 419.262045 336.4620505 2.526936087 0.041757 84 97 SH9612 9612 RUF3 3' 21.739338 69.808445 45.7738915 1.660617836 0.041754 123 32 SH12170 12170 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7736 7759 22.842901 76.684926 49.7639135 1.696914527 0.041686 134 52 SH18633 18633 YNL096C_14_444312_443395_INTRON_145_489 intron 34.014554 148.058904 34.014554 115.04435 74.529452 1.872327928 0.041671 125 64 SH13964 13964 MT COB Cytbi3 27.094081 129.290151 27.094081 103.19607 65.1450755 1.813881592 0.04166 29 51 SH4832 4832 snR8 5' 22.652911 75.475141 49.064026 1.690763182 0.041627 34 60 SH18232 18232 YML026C_13_223828_222987_INTRON_48_448 intron 25.116618 116.661126 25.116618 92.544508 58.830563 1.769603005 0.041595 213 59 SH7003 7003 snR60 96-104 + 3' 96 26.321333 99.497494 62.9094135 1.798715636 0.041567 12 99 SH15587 15587 YBR084C-A_2_415219_414144_INTRON_3_508 intron 26.794972 127.561086 26.794972 101.766114 64.280543 1.808079537 0.041562 24 38 SH14618 14618 MT 21S rRNA Sce1 endonuc 24.338916 110.343193 24.338916 87.004277 55.6715965 1.745633676 0.041557 17 46 SH16812 16812 YGL178W_7_167356_170575_INTRON_4_643 5' exon 25.374397 118.795474 25.374397 94.421077 59.897737 1.777410415 0.041537 143 26 SH4489 4489 U3b (snR17b) U3b 1 15 27.740115 105.001387 66.370751 1.821976732 0.041532 144 50 SH10822 10822 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 996 1016 142.055752 266.092497 204.0741245 2.309787942 0.041461 135 47 SH13152 13152 MT COX1 intronic 37.982486 157.556727 37.982486 120.574241 79.2783635 1.899154677 0.04141 79 28 SH5632 5632 snR34 snR34 81 100 22.883707 76.96946 49.9265835 1.698331848 0.041396 156 29 SH5693 5693 snR34 snR34 386 405 25.150686 92.811558 58.981122 1.77071303 0.041376 4 19 SH6496 6496 snR46 5' 25.773796 96.90513 61.339463 1.78773997 0.041351 85 55 SH20329 20329 YER074W spliced 30.277233 109.844722 70.0609775 1.845476192 0.041349 97 69 SH7928 7928 snoRNA cluster1 snR72 23.851861 106.395982 23.851861 83.544121 53.697991 1.729958038 0.041344 71 40 SH13650 13650 MT ATP6 ATP6 25.286486 118.086153 25.286486 93.799667 59.5430765 1.77483127 0.041342 9 18 SH13508 13508 MT COX1 intronic 27.774825 131.857324 27.774825 105.082499 66.428662 1.822355505 0.04133 178 37 SH19866 19866 Negative Control 27.675157 104.88209 66.2786235 1.82137348 0.041326 45 43 SH2204 2204 Met2 3' flank 22.758161 76.170065 49.464113 1.694290226 0.041323 143 27 SH1226 1226 Ile1 3' flank 23.497037 81.05621 52.2766235 1.718307529 0.041322 82 64 SH14227 14227 MT ATP9 ATP9 23.649478 104.772126 23.649478 82.122648 52.886063 1.723341238 0.041306 54 61 SH5192 5192 snR13 116-124 + 3' 116 22.650789 75.486518 49.0686535 1.690804141 0.0413 203 70 SH13655 13655 MT ATP6 ATP6 24.771676 113.872626 24.771676 90.10095 57.436313 1.759186554 0.041256 189 24 SH9893 9893 RUF5-1 RUF5-1 271 287 25.986099 97.922731 61.954415 1.792072261 0.041252 161 5 SH9064 9064 snR14 / U4 RNA 5' 24.779297 90.156524 57.4679105 1.759425407 0.041242 57 11 SH9016 9016 snR17a / U3a U3a 366 384 23.240527 79.291888 51.2662075 1.709831191 0.041241 85 46 SH1923 1923 Lys1 71-72 + 3' flank 71 90 21.563579 68.791863 45.177721 1.654924319 0.04124 169 81 SH4390 4390 telomerase RNA telomerase 986 1005 24.529135 88.385943 56.457539 1.751721943 0.041188 71 93 SH8636 8636 snR19 / U1 RNA 3' 24.502058 88.199619 56.3508385 1.750900383 0.041135 80 70 SH4048 4048 SRP RNA SRP RNA 131 148 25.119395 92.61287 58.8661325 1.769865504 0.041086 124 61 SH17422 17422 YIL111W_9_155219_155762_INTRON_2_89 intron 25.340437 118.559834 25.340437 94.219397 59.779917 1.776555308 0.041062 144 25 SH17716 17716 YKL081W_11_282533_284097_INTRON_206_531 intron 25.482576 119.743034 25.482576 95.260458 60.371517 1.780832089 0.041039 208 58 SH16539 16539 YER131W_5_423587_424307_INTRON_1_361 intron/exon 24.145871 108.809701 24.145871 85.66383 54.9048505 1.739610713 0.041033 80 71 SH20492 20492 YGL251C spliced 35.314792 116.8743 76.094546 1.88135353 0.041016 160 64 SH14959 14959 MT tRNA Met 3' 26.55603 126.222452 26.55603 100.666422 63.611226 1.803533766 0.04098 37 90 SH18851 18851 YNR053C_14_723108_721117_INTRON_811_1341 5' exon 24.378854 110.724413 24.378854 87.345559 55.8622065 1.747118086 0.040978 107 58 SH4696 4696 snR4 snR4 16 33 43.075303 127.786018 85.4306605 1.931613764 0.040957 62 53 SH8257 8257 snoRNA cluster4 5' 24.812525 114.233429 24.812525 90.420904 57.6167145 1.76054849 0.040948 44 46 SH21258 21258 YPL079W spliced 64.106177 156.943539 110.524858 2.043459966 0.040942 7 49 SH17243 17243 YHR079C-A_8_262554_262193_INTRON_114_199 3' exon 28.106913 132.878003 28.106913 105.77109 66.9390015 1.82567923 0.040928 11 90 SH6824 6824 snR52 snR52 26 45 36.881144 119.011065 77.9461045 1.891794415 0.040924 66 19 SH6266 6266 snR42 snR42 111 130 23.821251 83.36585 53.5935505 1.729112529 0.040908 133 63 SH1973 1973 Lys2 66-73 + 3' flank 66 83 25.236021 93.475335 59.355678 1.77346227 0.040901 37 34 SH10038 10038 RUF6 RUF6 36 53 29.342835 108.222193 68.782514 1.837478045 0.040866 106 25 SH5185 5185 snR13 snR13 81 97 94.986304 200.494382 147.740343 2.169499103 0.040863 134 96 SH983 983 Gly2 5' flank 24.065495 85.108311 54.586903 1.737088455 0.040818 194 102 SH17963 17963 YLR185W_12_522665_523290_INTRON_8_366 intron 26.96905 128.63244 26.96905 102.66339 64.81622 1.8116837 0.040805 143 87 SH19167 19167 YPL079W_16_406631_407534_INTRON_12_432 5' exon 60.6538 211.822361 60.6538 152.168561 106.4111805 2.026987261 0.040803 108 15 SH1938 1938 Lys1 3' flank 23.62727 82.010492 52.818881 1.722789196 0.040799 156 3 SH17421 17421 YIL111W_9_155219_155762_INTRON_2_89 intron 24.725017 113.542296 24.725017 89.817279 57.271148 1.757935889 0.040727 4 77 SH16044 16044 YDL191W_4_117665_118518_INTRON_4_494 intron 26.671373 126.911724 26.671373 101.240351 63.955862 1.805880357 0.040716 177 7 SH8721 8721 LSR1 / U2 RNA U2 246 265 23.397717 80.418126 51.9079215 1.715233639 0.040703 54 95 SH3567 3567 Tyr2 3' flank 28.46355 106.499258 67.481404 1.82918411 0.04063 102 52 SH19597 19597 AEP2/ATP13 2.1 34.203399 115.36699 74.7851945 1.873815627 0.040611 79 77 SH9154 9154 snR7 U5 RNA U5 41 55 27.825667 105.22575 66.5257085 1.822989508 0.040595 135 46 SH19918 19918 YAL030W spliced 113.427184 226.613687 170.0204355 2.230501124 0.040566 23 75 SH9474 9474 RUF2 RUF2 211 227 26.859815 102.157999 64.508907 1.809619684 0.040557 82 3 SH7543 7543 snR79 snR79 56 73 25.230736 93.473186 59.351961 1.773435073 0.040524 20 24 SH21413 21413 Ser3 spliced 26.265341 99.313897 62.789619 1.797887848 0.04049 111 40 SH12428 12428 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.134129 100.794755 23.134129 78.660626 50.8973775 1.706695406 0.040471 100 12 SH18476 18476 YMR143W_13_551927_552902_INTRON_25_568 intron 24.492776 111.688114 24.492776 88.195338 56.344057 1.750848115 0.040458 58 37 SH18282 18282 YML067C_13_140214_139063_INTRON_32_124 5' exon 80.104149 258.588105 80.104149 179.483956 129.7940525 2.113254792 0.040416 145 97 SH4993 4993 snR10 5' - 14 -4 14 59.931211 151.185311 105.558261 2.023492227 0.040391 7 33 SH17579 17579 YJL191W_10_73786_74610_INTRON_11_418 intron 38.824812 159.662779 38.824812 121.837967 80.3313895 1.904885279 0.040382 53 75 SH13105 13105 MT COX1 COX1ai3 30.11573 138.780619 30.11573 109.664889 69.8903095 1.844416964 0.040368 162 63 SH19721 19721 Negative Control 28.561877 106.71005 67.6359635 1.830177681 0.040359 160 51 SH7392 7392 snR68 3' 63.223824 155.783579 109.5037015 2.0394288 0.040321 87 69 SH20705 20705 YJL024C spliced 25.011943 91.912047 58.461995 1.766873631 0.0403 97 12 SH6286 6286 snR42 snR42 211 228 24.360623 87.278262 55.8194425 1.746785495 0.040271 19 30 SH15721 15721 YBR255C-A_2_727032_726576_INTRON_64_157 intron 24.330512 110.392391 24.330512 87.061879 55.6961955 1.74582553 0.040258 64 19 SH21076 21076 YMR230W spliced 27.079357 103.242531 65.160944 1.813987367 0.040211 193 2 SH18873 18873 YNR053C_14_723108_721117_INTRON_811_1341 intron 27.754199 131.861148 27.754199 105.106949 66.430574 1.822368005 0.040148 61 58 SH4615 4615 snR3 5' - 10 10 28.928772 107.450199 68.1894855 1.833717414 0.04012 183 15 SH9117 9117 snR14 / U4 RNA 3' 23.391438 80.424334 51.907886 1.715233342 0.040112 168 29 SH13632 13632 MT ATP6 ATP6 24.775434 114.017693 24.775434 90.242259 57.5088465 1.759734657 0.040018 12 89 SH19033 19033 YOR234C_15_779404_778554_INTRON_20_546 exon/intron 24.353784 110.606233 24.353784 87.252449 55.8031165 1.746658454 0.040012 29 19 SH14158 14158 MT COB intronic 53.134361 193.970109 53.134361 141.835748 97.4850545 1.988938039 0.039992 150 77 SH17254 17254 YHR097C_8_298611_297387_INTRON_126_249 3' exon 25.26625 118.050642 25.26625 93.784392 59.525321 1.774701746 0.039971 88 90 SH3704 3704 Val3 tRNA 1 17 1577.806863 2087.097869 1832.452366 3.263032694 0.039963 156 47 SH21615 21615 copy of SH7316 22.730783 76.103075 49.416929 1.693875753 0.039915 59 91 SH4963 4963 snR9 3' 21.499485 68.501712 45.0005985 1.65321829 0.039893 118 67 SH2524 2524 Pro1 3' flank 24.552307 88.668193 56.61025 1.752895073 0.039885 21 7 SH4190 4190 telomerase RNA 5' - 5 5 23.5246 81.371837 52.4482185 1.719730741 0.039869 200 57 SH2043 2043 Lys3 3' flank 28.707614 107.027019 67.8673165 1.831660677 0.039868 31 84 SH18092 18092 YLR367W_12_855877_857316_INTRON_698_1180 intron 23.637793 104.802605 23.637793 82.164812 52.9013025 1.723466365 0.039861 211 90 SH15886 15886 YDL082W_4_308423_309387_INTRON_5_369 intron 39.020024 160.166717 39.020024 122.146693 80.5833585 1.906245364 0.039856 47 102 SH13498 13498 MT COX1 intronic 25.130798 116.948582 25.130798 92.817784 58.974291 1.770662728 0.039799 94 75 SH18810 18810 YNL302C_14_62942_61957_INTRON_21_571 5' exon 134.979807 390.598286 134.979807 256.618479 195.799143 2.291810787 0.039793 157 84 SH3544 3544 Tyr2 5' flank - tRNA7 7 29.640824 108.868417 69.2546205 1.840448754 0.039769 83 82 SH5429 5429 snR31 211-225+3' 211 23.988725 84.655703 54.322214 1.734977462 0.03975 202 87 SH6825 6825 snR52 snR52 31 48 28.676219 106.973302 67.8247605 1.831388269 0.039718 208 90 SH14447 14447 MT 21S rRNA 21S rRNA3 24.491182 111.743947 24.491182 88.252765 56.3719735 1.751063239 0.039699 24 84 SH13968 13968 MT COB Cytbi3 25.021099 116.055895 25.021099 92.034796 58.5279475 1.767363294 0.039698 204 86 SH4156 4156 SRP RNA 671-675 + 3' 671 26.693985 101.435645 64.064815 1.806619576 0.039625 171 32 SH246 246 Arg3 3' flank 24.988456 91.806821 58.3976385 1.766395285 0.039621 71 42 SH1580 1580 Leu4 tRNA-intron/exon 71 87 238.473639 398.949649 318.711644 2.503397931 0.039611 69 95 SH20908 20908 YLR316C spliced 25.924097 97.753492 61.8387945 1.791261015 0.039608 198 71 SH7059 7059 snR62 86-100 + 3' 86 23.285578 79.734667 51.5101225 1.711892583 0.039592 36 20 SH4661 4661 snR3 3' 24.438517 87.892581 56.165549 1.749470008 0.039573 124 32 SH2572 2572 Pro2 96-103 + 3' flank 96 34.457997 115.779125 75.118561 1.87574726 0.03957 46 18 SH1068 1068 Gly3 3' flank 22.510373 74.727009 48.618691 1.686803262 0.039544 10 96 SH1879 1879 Leu9 3' flank 24.622113 89.19604 56.9090765 1.755181538 0.039524 2 83 SH18987 18987 YOR096W_15_505793_506766_INTRON_145_545 intron 22.985143 99.756717 22.985143 77.771574 50.3783585 1.702244013 0.039499 80 69 SH16453 16453 YER074W-A_0_5_307649_INTRON_95_196 intron 5448.365548 11656.13172 5448.365548 6208.766171 5828.56586 3.765561708 0.039494 172 20 SH15064 15064 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.833326 106.40839 23.833326 83.575064 53.704195 1.730008211 0.03949 43 96 SH18745 18745 YNL162W_14_331319_332151_INTRON_5_516 intron 26.570323 126.424669 26.570323 100.854346 63.7123345 1.804223518 0.03947 51 42 SH7073 7073 snR62 3' 26.508509 100.560494 63.5345015 1.803009627 0.039437 74 32 SH3981 3981 RNase MRP RNaseMRP 321 336 25.498502 95.535337 60.5169195 1.781876813 0.039424 136 5 SH20719 20719 YJL136C spliced 37.23408 119.616333 78.4252065 1.894455671 0.039393 59 44 SH19648 19648 SIR1 2.2 25.215228 93.469157 59.3421925 1.773363588 0.039391 208 104 SH2015 2015 Lys3 tRNA 21 33 31.963386 112.328313 72.1458495 1.858211351 0.039387 211 88 SH12578 12578 MT_15S MT_15S 24.483069 111.708041 24.483069 88.224972 56.3540205 1.750924906 0.039373 57 57 SH13646 13646 MT ATP6 ATP6 24.483809 111.71443 24.483809 88.230621 56.357215 1.750949523 0.039369 21 99 SH18606 18606 YNL069C_14_494998_493953_INTRON_29_477 intron 24.312984 110.329861 24.312984 87.016877 55.6649305 1.745581671 0.039361 147 43 SH2209 2209 Phe1 5' flank 58.117863 148.771124 103.4444935 2.014707377 0.039348 214 38 SH12762 12762 MT COX1 COX1ai1 59.356835 208.815764 59.356835 150.458929 104.907882 2.020808119 0.039333 60 25 SH18801 18801 YNL301C_14_64561_63569_INTRON_113_544 intron 25.282982 118.250815 25.282982 93.967833 59.6254075 1.77543136 0.039331 209 78 SH5472 5472 snR32 snR32 21 40 26.036776 98.312326 62.174551 1.793612658 0.039329 15 35 SH1467 1467 Leu2 106-114 + 3' flank 106 24.866457 90.959076 57.9127665 1.762774312 0.039313 26 96 SH13407 13407 MT COX1 intronic 24.567539 112.397703 24.567539 88.830164 56.6988515 1.753574262 0.039291 208 92 SH4978 4978 snR10 5' 24.396392 87.621792 56.009092 1.748258532 0.039284 10 17 SH13616 13616 MT ATP6 5' 23.404346 102.989784 23.404346 80.585438 51.994892 1.71596068 0.039263 186 45 SH4545 4545 U3b (snR17b) U3b 281 295 25.956626 97.93567 61.946148 1.792014306 0.039255 165 38 SH20228 20228 YDR129C spliced 26.453212 100.311847 63.3825295 1.801969567 0.039228 24 57 SH14267 14267 MT VAR1 includes 5’ processing site VAR1 26.227757 124.462742 26.227757 99.234985 62.731371 1.797484779 0.039197 77 73 SH9023 9023 snR17a / U3a U3a 401 416 132.665313 253.521228 193.0932705 2.285767138 0.039153 174 55 SH12835 12835 MT COX1 COX1ai1 22.562585 96.653823 22.562585 75.091238 48.8269115 1.688659254 0.039113 19 22 SH6446 6446 snR45 snR45 76 92 90.627443 194.497356 142.5623995 2.154004996 0.039088 177 36 SH1869 1869 Leu9 86-101 + 3' flank 86 29.700988 109.025786 69.363387 1.841130291 0.039078 120 12 SH21499 21499 copy of SH2549 26.690296 101.462215 64.0762555 1.806697124 0.039069 133 45 SH9720 9720 RUF4 RUF4 376 391 25.566242 96.068641 60.8174415 1.784028146 0.039067 126 61 SH14518 14518 MT 21S rRNA 21S rRNA3 45.106054 174.837102 45.106054 130.731048 87.918551 1.944080522 0.039048 112 78 SH20539 20539 YGR183C spliced 23.336551 80.133598 51.7350745 1.713785079 0.039041 152 30 SH371 371 Asn1 5' flank 25.366863 94.60813 59.9874965 1.778060738 0.039041 95 87 SH1350 1350 Ile3 131-133 + 3' flank 131 150 24.375527 87.499279 55.937403 1.7477023 0.039013 193 74 SH14702 14702 MT tRNA thr2 tRNA 33.327779 146.559044 33.327779 114.231265 73.779522 1.867935837 0.038987 170 103 SH5548 5548 snR33 snR33 26 43 25.560861 96.037208 60.7990345 1.783896683 0.038984 161 91 SH9883 9883 RUF5-1 RUF5-1 221 235 28.895901 107.451737 68.173819 1.833617623 0.038954 158 37 SH14435 14435 MT 21S rRNA 21S rRNA3 24.492157 111.822662 24.492157 88.330505 56.411331 1.751366347 0.038917 134 62 SH11279 11279 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3281 3301 23.582633 81.859976 52.7213045 1.721986148 0.038906 93 57 SH19364 19364 YPR028W_16_623522_624197_INTRON_52_184 intron 27.817926 132.123361 27.817926 105.305435 66.5616805 1.823224278 0.03889 115 16 SH15062 15062 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.866769 114.868502 24.866769 91.001733 57.934251 1.762935397 0.03888 106 52 SH18761 18761 YNL162W_14_331319_332151_INTRON_5_516 intron 23.879861 106.839262 23.879861 83.959401 53.919631 1.731746911 0.038868 127 3 SH4337 4337 telomerase RNA telomerase 721 741 23.056932 78.28801 50.672471 1.704772083 0.038846 43 59 SH5389 5389 snR31 snR31 11 27 27.491666 104.649835 66.0707505 1.82000924 0.038841 77 5 SH12402 12402 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.654259 134.63384 28.654259 106.979581 67.81692 1.831338062 0.038841 117 85 SH10227 10227 RUF6 RUF6 981 998 24.241537 86.548738 55.3951375 1.743471645 0.038839 39 75 SH8570 8570 snR19 / U1 RNA U1 346 358 25.153312 93.073444 59.113378 1.771685778 0.038829 93 65 SH2717 2717 Pro5 5' flank 22.474189 74.553479 48.513834 1.685865598 0.038801 139 76 SH16640 16640 YFR024C-A_6_203420_201947_INTRON_48_165 intron 252.089981 668.978679 252.089981 417.888698 334.9893395 2.525030987 0.038784 59 90 SH15355 15355 YBL026W_2_170585_171000_INTRON_55_182 intron 27.049561 129.265716 27.049561 103.216155 65.132858 1.813800135 0.038763 145 44 SH3105 3105 Ser4 5' flank 28.597527 106.871925 67.734726 1.830811378 0.038753 174 22 SH1126 1126 Gly4 3' flank 24.192733 86.207563 55.200148 1.741940242 0.038726 55 59 SH462 462 Asp1 3' flank 32.20874 112.704801 72.4567705 1.860078973 0.038715 112 6 SH7579 7579 snR189 5' 23.772349 83.212169 53.492259 1.728290939 0.038706 200 51 SH20738 20738 YJL191W spliced 28.721309 107.121361 67.921335 1.832006213 0.038686 121 11 SH14313 14313 MT VAR1 includes 5’ processing site VAR1 24.796874 114.317175 24.796874 90.520301 57.6585875 1.760863999 0.038672 2 61 SH8251 8251 snoRNA cluster4 5' 24.779538 114.177835 24.779538 90.398297 57.5889175 1.760338915 0.03865 88 58 SH12705 12705 MT ORF 8 (hypothetical) ORF8 22.313468 94.863989 22.313468 73.550521 47.9319945 1.680625501 0.03863 33 78 SH6139 6139 snR39B snR39B 36 54 36.546943 118.67661 77.6117765 1.889927624 0.038627 153 103 SH662 662 Gln2 3' flank 25.044283 92.307782 58.6760325 1.76846074 0.038581 10 46 SH16277 16277 YDR447C_4_1355542_1354818_INTRON_4_317 intron 25.612965 120.963788 25.612965 96.350823 60.981894 1.785200909 0.038579 47 31 SH16926 16926 YGR001C_7_498029_497128_INTRON_36_97 exon/intron 25.105382 116.856828 25.105382 92.751446 58.928414 1.770324753 0.038563 172 33 SH614 614 Gln1 3' flank 22.941012 77.562385 50.2516985 1.701150745 0.038528 158 14 SH8478 8478 snoRNA cluster 5 3' 24.530804 112.171359 24.530804 88.640555 56.5856795 1.752706535 0.038514 105 38 SH8625 8625 snR19 / U1 RNA U1 621 635 396.921883 616.418515 506.670199 2.704725361 0.038489 56 89 SH12612 12612 MT_15S MT_15S 50.401104 187.564043 50.401104 138.162939 94.2820215 1.974428886 0.038488 12 11 SH1154 1154 His1 5' flank - tRNA8 8 25.340193 94.467002 59.9035975 1.777452905 0.038486 28 21 SH15459 15459 YBL087C_2_60732_59815_INTRON_43_546 intron 27.44849 131.030955 27.44849 104.582465 66.0154775 1.819645769 0.03848 17 51 SH9810 9810 RUF4 3' 26.960183 102.809423 64.884803 1.81214299 0.038464 111 103 SH16865 16865 YGL187C_7_150529_149708_INTRON_1_342 intron 23.884789 106.916488 23.884789 84.031699 53.958244 1.732057808 0.038443 121 42 SH17508 17508 YJL136C_10_156971_156248_INTRON_25_484 intron 115.383711 344.021013 115.383711 229.637302 172.5105065 2.23681555 0.038421 199 69 SH7848 7848 snoRNA cluster1 snR74/intergenic 26.998458 128.996434 26.998458 102.997976 64.998217 1.812901443 0.038414 193 92 SH4421 4421 telomerase RNA telomerase 1141 1160 24.07404 85.386797 54.7304185 1.738228769 0.03838 2 22 SH863 863 Glu2 3' flank 23.805915 83.478267 53.642091 1.729505699 0.038377 26 9 SH5030 5030 snR10 snR10 181 197 33.488901 114.493763 73.991332 1.869180846 0.038359 47 24 SH20048 20048 YBR191W spliced 33.711581 114.807695 74.259638 1.870752828 0.038345 214 85 SH21820 21820 copy of SH16000 32.382811 112.966843 72.674827 1.861384007 0.038315 201 5 SH415 415 Asn1 3' flank 30.724581 110.645892 70.6852365 1.849328715 0.038302 190 21 SH13947 13947 MT COB Cytbi3 23.626669 104.847608 23.626669 82.220939 52.923804 1.723651052 0.0383 41 58 SH15149 15149 MT tRNA Thr1 reverse complement tRNA / 3' 25.311034 118.585699 25.311034 94.274665 59.7928495 1.776649251 0.038273 112 87 SH179 179 Arg2 11-23 11 23 26.591152 101.049207 63.8201795 1.804958021 0.038272 27 84 SH13561 13561 MT COX1 Exon 6 23.358987 102.71328 23.358987 80.354293 51.85664 1.714804374 0.038266 17 60 SH11078 11078 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2276 2293 2218.868871 2825.982009 2522.42544 3.401818338 0.038251 141 52 SH17353 17353 YIL018W_9_316766_317930_INTRON_5_404 3' exon 39.826565 162.207323 39.826565 123.380758 81.6036615 1.911709646 0.038248 5 15 SH4929 4929 snR9 snR9 51 67 25.210547 93.54581 59.3781785 1.773626871 0.038237 113 85 SH8057 8057 snoRNA cluster 2 intergenic 24.804895 114.428575 24.804895 90.62368 57.7142875 1.761283339 0.038177 9 57 SH18065 18065 YLR344W_12_819312_820142_INTRON_20_466 intron 27.051746 129.331211 27.051746 103.279465 65.1656055 1.814018435 0.038112 135 56 SH15337 15337 YAL030W_1_87288_87754_INTRON_103_215 intron 26.130141 123.983385 26.130141 98.853244 62.4916925 1.795822287 0.038102 186 73 SH9035 9035 snR17a / U3a U3a 461 476 139.56279 263.168251 201.3655205 2.303985109 0.038079 162 3 SH6763 6763 snR50 5' - 8 -9 8 32.982082 113.801622 73.391852 1.865647847 0.03807 18 5 SH7129 7129 snR63 snR63 151 167 40.656589 124.560828 82.6087085 1.917025832 0.038001 35 70 SH5638 5638 snR34 snR34 111 128 55.703711 145.55437 100.6290405 2.002723332 0.037981 99 59 SH8798 8798 LSR1 / U2 RNA U2 631 647 25.2034 93.520445 59.3619225 1.773507958 0.03796 38 29 SH14806 14806 "MT tRNAs (Lys, Arg1, Gly)" intergenic 25.492776 120.130102 25.492776 95.637326 60.565051 1.782222087 0.037955 196 34 SH16673 16673 YFR032C-A_6_223758_223245_INTRON_1_331 intron 26.503036 126.154434 26.503036 100.651398 63.577217 1.803301513 0.037953 172 76 SH1861 1861 Leu9 tRNA-intron/exon 46 63 26.129086 98.86651 62.497798 1.795864716 0.037866 47 18 SH2417 2417 Phe4 3' flank 26.696755 101.589712 64.1432335 1.807150849 0.037858 161 60 SH7840 7840 snoRNA cluster1 snR74 24.624128 112.987013 24.624128 89.362885 56.9935065 1.755825378 0.037858 113 93 SH19062 19062 YOR293W_15_867094_867848_INTRON_53_489 5' exon 550.372451 1369.082215 550.372451 819.709764 685.0411075 2.835716633 0.037854 79 49 SH3793 3793 RNaseP 5' flank 25.571163 96.207245 60.889204 1.784540297 0.037848 169 40 SH8970 8970 snR17a / U3a U3a 136 150 30.996853 111.057636 71.0272445 1.851424967 0.037829 148 25 SH18428 18428 YMR142C_13_551206_550205_INTRON_5_406 intron 27.230023 130.396883 27.230023 104.16686 65.6984415 1.817555067 0.037789 22 93 SH4343 4343 telomerase RNA telomerase 751 770 24.354812 87.465022 55.909917 1.747488848 0.037768 180 27 SH7864 7864 snoRNA cluster1 intergenic/snR73 25.336475 118.846001 25.336475 94.509526 59.9230005 1.777593551 0.037767 193 47 SH1442 1442 Leu2 5' flank 28.526881 106.787972 67.6574265 1.830315474 0.037756 115 50 SH19665 19665 SIR1 2.4 24.201175 86.359739 55.280457 1.742571625 0.037713 98 23 SH3946 3946 RNase MRP RNaseMRP 146 163 27.940843 105.621052 66.7809475 1.824652577 0.037668 11 76 SH2698 2698 Pro4 3' flank 25.197826 93.515925 59.3568755 1.773471032 0.037584 184 103 SH7558 7558 snR79 3' 24.401965 87.814126 56.1080455 1.749025141 0.037583 51 37 SH18421 18421 YMR133W_13_536206_537608_INTRON_1243_1358 intron 26.434541 125.786445 26.434541 100.351904 63.3932225 1.802042829 0.037582 161 18 SH18516 18516 YMR201C_13_667043_665844_INTRON_28_111 intron/exon 40.234898 163.228056 40.234898 123.993158 82.114028 1.914417356 0.037566 76 86 SH14325 14325 MT VAR1 includes 5’ processing site VAR1 22.587278 96.953378 22.587278 75.3661 48.976689 1.689989422 0.037564 50 73 SH10020 10020 RUF6 5' 1482.035053 1976.666014 1729.350534 3.237883032 0.037539 163 32 SH19268 19268 YPL143W_16_282121_282969_INTRON_20_544 intron 39.10111 160.505038 39.10111 122.403928 80.752519 1.907156079 0.037539 157 50 SH9740 9740 RUF4 RUF4 476 493 24.525967 88.696573 56.61127 1.752902898 0.037522 201 79 SH6535 6535 snR46 snR46 166 183 23.740088 83.088986 53.414537 1.727659468 0.037502 98 87 SH20593 20593 YHR039C-A spliced 29.653502 109.025053 69.3392775 1.840979312 0.037488 72 81 SH11702 11702 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5396 5411 17901.80903 17678.53624 17790.17263 4.250180162 0.037479 71 9 SH21636 21636 copy of SH8141 2286.233881 2902.861785 2594.547833 3.414061682 0.037447 141 49 SH12976 12976 MT COX1 COX1ai2 26.311874 125.087227 26.311874 99.775353 63.0436135 1.799641098 0.037433 200 41 SH19299 19299 YPL198W_16_173151_174701_INTRON_12_420 exon/intron 26.733963 127.537413 26.733963 101.80345 64.2687065 1.807999559 0.037423 79 43 SH13056 13056 MT COX1 COX1ai2 25.553833 120.695223 25.553833 96.14139 60.8476115 1.784243535 0.037401 37 62 SH15570 15570 YBR084C-A_2_415219_414144_INTRON_3_508 intron 25.480514 120.082367 25.480514 95.601853 60.5411835 1.782050907 0.037397 201 87 SH19571 19571 AEP2/ATP13 0.6 26.570766 101.021311 63.7960385 1.804793711 0.037389 207 104 SH19339 19339 YPL241C_16_96258_95372_INTRON_26_105 intron 23.911997 107.231541 23.911997 84.319544 54.1157705 1.733323846 0.037371 8 18 SH12685 12685 MT tRNA Trp 3' 23.485015 103.792974 23.485015 81.307959 52.396487 1.71930217 0.03737 15 15 SH4835 4835 snR8 5' 23.479481 81.269407 52.374444 1.719119426 0.037369 129 78 SH16226 16226 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 24.445863 111.589252 24.445863 88.143389 56.294626 1.750466938 0.037369 135 12 SH9115 9115 snR14 / U4 RNA 3' 24.291369 87.042745 55.667057 1.745598262 0.037361 3 77 SH13392 13392 MT COX1 intronic 25.639062 121.207794 25.639062 96.568732 61.103897 1.786068909 0.03734 51 51 SH5318 5318 snR30 snR30 441 455 26.493883 100.656535 63.575209 1.803287797 0.037331 16 57 SH8592 8592 snR19 / U1 RNA U1 456 472 24.431801 88.047845 56.239823 1.750043945 0.037327 206 36 SH18081 18081 YLR344W_12_819312_820142_INTRON_20_466 intron 26.584258 126.675334 26.584258 101.091076 63.837667 1.805077007 0.037327 197 96 SH8304 8304 snoRNA cluster4 intergenic 27.108148 129.725506 27.108148 103.617358 65.362753 1.815330336 0.037304 147 77 SH13790 13790 MT COB intronic 25.173392 117.540392 25.173392 93.367 59.270196 1.772836363 0.037284 21 59 SH18357 18357 YMR033W_13_337787_339276_INTRON_31_116 intron 24.032947 108.223934 24.032947 85.190987 54.611967 1.737287819 0.037278 144 75 SH12497 12497 MT_tRNA Pro tRNA 66.734098 226.681479 66.734098 160.947381 113.8407395 2.056297708 0.037273 139 78 SH14748 14748 MT ORF11; tRNA Leu; tRNA Gln ORF11 28.565601 134.46002 28.565601 106.894419 67.73001 1.83078114 0.037237 69 29 SH18386 18386 YMR116C_13_500687_499455_INTRON_538_810 intron 24.407905 111.295506 24.407905 87.887601 56.147753 1.749332381 0.037233 155 15 SH10139 10139 RUF6 RUF6 541 553 1565.532012 2076.350514 1820.941263 3.260295937 0.037211 165 52 SH960 960 Gly1 tRNA 51 63 44.802845 130.422987 87.612916 1.942568135 0.037211 11 25 SH15344 15344 YBL018C_2_186436_185960_INTRON_48_122 5' exon 25.624591 121.136571 25.624591 96.51198 61.0682855 1.785815727 0.03718 210 87 SH9974 9974 RUF5-1 RUF5-1 676 697 24.48688 88.452388 56.469634 1.751814973 0.037161 51 9 SH20216 20216 YDR064W spliced 25.045512 92.451468 58.74849 1.768996709 0.037158 159 102 SH3958 3958 RNase MRP RNaseMRP 206 218 54.904195 144.502823 99.703509 1.998710443 0.037142 161 96 SH12367 12367 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.318084 125.149208 26.318084 99.831124 63.074604 1.799854533 0.037101 27 44 SH39 39 Ala1 3' flank 29.241677 108.241226 68.7414515 1.837218698 0.037076 159 19 SH4307 4307 telomerase RNA telomerase 571 587 24.135126 85.943626 55.039376 1.740673502 0.037057 213 33 SH21676 21676 copy of SH9839 23.411025 80.819869 52.115447 1.716966467 0.037037 8 47 SH1528 1528 Leu3 111-114 + 3' flank 111 22.607164 75.534572 49.070868 1.69082374 0.037017 14 85 SH12871 12871 MT COX1 COX1ai1 25.89993 122.738312 25.89993 97.838382 61.869156 1.791474192 0.037 51 49 SH8003 8003 snoRNA cluster 2 intergenic 24.507451 112.125256 24.507451 88.617805 56.562628 1.752529579 0.036945 90 47 SH17245 17245 YHR097C_8_298611_297387_INTRON_126_249 5' exon 65.813794 224.487041 65.813794 159.673247 112.7435205 2.052091592 0.036941 113 39 SH14873 14873 MT tRNA Ala 5' 22.648817 97.455743 22.648817 75.806926 49.2278715 1.692211058 0.036937 206 32 SH6762 6762 snR50 5' - 3 -14 3 28.45901 106.699801 67.5794055 1.829814367 0.036927 163 70 SH2513 2513 Pro1 tRNA 56 68 35.493754 117.353513 76.4236335 1.883227682 0.036911 94 81 SH17250 17250 YHR097C_8_298611_297387_INTRON_126_249 intron 25.572173 120.855292 25.572173 96.283119 60.927646 1.784814399 0.036907 49 77 SH7349 7349 snR68 5' 23.46903 81.236168 52.352599 1.718938247 0.036901 64 102 SH1033 1033 Gly3 5' flank 22.603847 75.523062 49.0634545 1.690758123 0.03689 102 44 SH20559 20559 YHR001W-A spliced 38.488773 121.575379 80.032076 1.903264082 0.036865 41 63 SH17349 17349 YIL018W_9_316766_317930_INTRON_5_404 intron 25.571829 120.857292 25.571829 96.285463 60.928646 1.784821527 0.036854 165 32 SH6491 6491 snR46 5' 26.76862 102.017401 64.3930105 1.80883873 0.036834 67 85 SH7629 7629 snR189 3' 22.346587 73.895952 48.1212695 1.682337076 0.036796 194 38 SH18401 18401 YMR125W_13_517538_520445_INTRON_26_347 intron 24.142533 109.163383 24.142533 86.02085 55.0816915 1.741007269 0.036791 99 17 SH21013 21013 YML124C spliced 58.127789 148.987648 103.5577185 2.015182474 0.036781 57 102 SH18209 18209 YML024W_13_225889_226697_INTRON_4_401 3' exon 25.515778 120.43827 25.515778 95.922492 60.719135 1.783325576 0.036776 55 71 SH2756 2756 Pro5 3' flank 26.964208 102.970053 64.9671305 1.812693685 0.036715 189 30 SH13873 13873 MT COB intronic 24.343993 110.827317 24.343993 87.483324 55.9136585 1.74751791 0.03671 156 88 SH14432 14432 MT 21S rRNA 21S rRNA3 34.209937 148.807331 34.209937 115.597394 74.9036655 1.874503071 0.036696 192 15 SH21916 21916 copy of SH19999 34.805047 116.422098 75.6135725 1.878599758 0.036693 72 23 SH494 494 Asp2 tRNA 31 43 40.26565 124.092473 82.1790615 1.914761177 0.036661 192 87 SH811 811 Glu1 71-72 + 3' flank 71 92 22.540464 75.136988 48.838726 1.688764326 0.036651 210 97 SH991 991 Gly2 5' flank 24.28299 87.047326 55.665158 1.745583446 0.036645 197 100 SH168 168 Arg2 5' flank 28.902009 107.596307 68.249158 1.834097298 0.036633 49 93 SH12666 12666 MT_15S MT_15S / 3' 23.980167 107.851551 23.980167 84.871384 54.4257755 1.735804626 0.036629 127 99 SH12516 12516 MT_ORF6 + ORF7 (hypothetical) ORF6/7 23.428383 103.404939 23.428383 80.976556 52.2024695 1.717691048 0.036616 214 46 SH6357 6357 snR43 snR43 26 42 26.751783 101.955515 64.353649 1.808573177 0.036594 197 56 SH10239 10239 RUF6 1041-1051 + 3' 1041 26.323899 99.90159 63.1127445 1.800117066 0.036558 147 42 SH18155 18155 YLR426W_12_987057_988108_INTRON_81_151 exon/intron 26.950261 128.865933 26.950261 102.915672 64.9329665 1.812465244 0.036555 6 21 SH14597 14597 MT 21S rRNA Sce1 endonuc 28.157777 133.277734 28.157777 106.119957 67.138867 1.826974008 0.036535 5 22 SH18095 18095 YLR367W_12_855877_857316_INTRON_698_1180 intron 26.065883 123.73447 26.065883 98.668587 62.367235 1.79495649 0.036519 118 82 SH18093 18093 YLR367W_12_855877_857316_INTRON_698_1180 intron 24.30614 110.532641 24.30614 87.226501 55.7663205 1.74637199 0.036518 201 51 SH1747 1747 Leu7 tRNA 31 47 26.508131 100.789284 63.6487075 1.803789589 0.036518 50 15 SH18917 18917 YOL121C_15_92849_92025_INTRON_21_410 5' exon 37.087048 155.662661 37.087048 119.575613 78.3313305 1.893935503 0.036517 156 11 SH7881 7881 snoRNA cluster1 snR73 27.013194 129.238658 27.013194 103.225464 65.119329 1.813709917 0.036481 104 12 SH13054 13054 MT COX1 COX1ai2 26.43932 125.902076 26.43932 100.462756 63.451038 1.802438731 0.036466 28 8 SH977 977 Gly1 3' flank 24.839667 91.033387 57.936527 1.762952458 0.036457 36 73 SH781 781 Glu1 5' flank 25.486752 95.740612 60.613682 1.782570666 0.036451 124 94 SH4300 4300 telomerase RNA telomerase 536 557 24.693074 89.984913 57.3389935 1.758450065 0.036439 77 30 SH15437 15437 YBL072C_2_89435_88518_INTRON_1_308 intron 23.818244 106.556132 23.818244 83.737888 53.778066 1.73060518 0.036408 82 75 SH21163 21163 YNL302C spliced 29.721381 109.220324 69.4708525 1.841802628 0.036407 7 54 SH17004 17004 YGR148C_7_788173_787307_INTRON_1_392 5' exon 25.502732 120.367898 25.502732 95.865166 60.683949 1.783073835 0.036381 145 39 SH7731 7731 snoRNA cluster1 intergenic 24.996843 116.170569 24.996843 92.173726 58.5852845 1.767788543 0.036375 11 46 SH14197 14197 MT COB Exon6 23.365284 102.924492 23.365284 80.559208 51.962246 1.715687915 0.036351 105 24 SH20633 20633 YHR123W spliced 73.609657 170.713678 122.1616675 2.086934952 0.036305 43 33 SH19383 19383 YPR043W_16_654161_654842_INTRON_3_405 intron 27.51075 131.342962 27.51075 104.832212 66.171481 1.820670855 0.036255 3 45 SH18122 18122 YLR388W_12_898158_898821_INTRON_1_488 intron 25.357734 119.172846 25.357734 94.815112 60.086423 1.778776351 0.036223 50 8 SH14780 14780 MT ORF11; tRNA Leu; tRNA Gln tRNA Gln 22.983887 100.005091 22.983887 78.021204 50.5025455 1.703313269 0.036219 42 65 SH9317 9317 RUF1 RUF1 161 178 25.420008 95.273152 60.34658 1.780652663 0.036212 174 6 SH8371 8371 snoRNA cluster 5 5' 25.27905 118.519348 25.27905 94.240298 59.759674 1.77640822 0.036212 37 11 SH9061 9061 snR14 / U4 RNA 5' 24.303512 87.236755 55.7701335 1.746401684 0.036197 46 79 SH14218 14218 MT ATP9 ATP9 23.841558 106.764645 23.841558 83.923087 53.8823225 1.731446307 0.036184 50 62 SH1174 1174 His1 3' flank 25.735478 97.11701 61.426244 1.788353961 0.036171 61 70 SH10697 10697 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 371 389 65.522638 159.329452 112.426045 2.050866933 0.03614 207 5 SH7714 7714 snoRNA cluster1 snR77 59.15966 208.600711 59.15966 150.441051 104.8003555 2.020362756 0.036139 196 14 SH16351 16351 YDR500C_4_1450856_1450201_INTRON_8_396 intron 26.210008 124.59925 26.210008 99.389242 62.799625 1.79795705 0.036126 29 65 SH4666 4666 snR3 3' 22.903755 77.51122 50.2074875 1.700768489 0.036103 91 62 SH15949 15949 YDL125C_4_239605_239018_INTRON_98_208 intron/exon 27.858348 132.403019 27.858348 105.544671 66.7015095 1.824135662 0.036069 91 78 SH5524 5524 snR33 5' 100.416399 208.765757 154.591078 2.189184426 0.036054 56 63 SH6174 6174 snR40 5' 25.62065 96.579933 61.1002915 1.786043282 0.036035 13 57 SH4040 4040 SRP RNA SRP RNA 91 106 26.793919 102.204776 64.4993475 1.809555321 0.036017 100 23 SH16078 16078 YDR025W_4_491510_492319_INTRON_46_384 intron 23.613863 104.942505 23.613863 82.328642 52.9712525 1.724040242 0.036003 138 25 SH21872 21872 copy of SH18602 25.061701 92.683151 58.872426 1.769911932 0.035953 146 19 SH3584 3584 Val1 5' flank 45.622789 131.676775 88.649782 1.947677672 0.035909 144 68 SH20588 20588 YHR021C spliced 26.550086 101.041402 63.795744 1.804791707 0.035881 99 99 SH19684 19684 Negative Control 28.776814 107.392054 68.084434 1.833047831 0.035865 184 23 SH2911 2911 Pro8 tRNA 76 88 44.909882 130.66669 87.788286 1.94343657 0.035863 184 70 SH20026 20026 YBR119W spliced 24.726458 90.280621 57.5035395 1.759694578 0.035823 36 62 SH14333 14333 MT VAR1 includes 5’ processing site VAR1 23.277965 102.275978 23.277965 79.998013 51.637989 1.712969321 0.035809 160 29 SH18883 18883 YOL047C_15_242745_241612_INTRON_244_306 5' exon 35.391856 151.67299 35.391856 117.281134 76.336495 1.882732215 0.035751 46 55 SH16622 16622 YFL039C_6_54695_53260_INTRON_11_318 intron 27.109834 129.862381 27.109834 103.752547 65.4311905 1.815784822 0.035742 20 95 SH1372 1372 Leu1 5' flank 26.026406 98.540493 62.2834495 1.794372657 0.035733 130 35 SH8459 8459 snoRNA cluster 5 snR128 44.73822 174.169714 44.73822 130.431494 87.584857 1.942429025 0.035714 120 34 SH15594 15594 YBR089C-A_2_426588_426148_INTRON_1_114 exon/intron 24.457004 111.832573 24.457004 88.375569 56.4162865 1.751404496 0.035676 156 69 SH6267 6267 snR42 snR42 116 137 22.546414 75.249619 48.8980165 1.689291243 0.035667 154 38 SH8950 8950 snR17a / U3a U3a 36 53 29.27432 108.389316 68.831818 1.83778924 0.035617 156 92 SH16946 16946 YGR027C_7_534779_534126_INTRON_1_312 intron 25.469773 120.167749 25.469773 95.697976 60.5838745 1.782357044 0.035612 157 46 SH5169 5169 snR13 snR13 1 20 23.766429 83.440359 53.603394 1.729192289 0.035608 161 45 SH473 473 Asp2 5' flank 90.508245 194.71829 142.6132675 2.15415993 0.035606 177 16 SH21257 21257 YPL075W spliced 26.818267 102.355451 64.586859 1.810144164 0.035602 212 103 SH17972 17972 YLR185W_12_522665_523290_INTRON_8_366 3' exon 25.533152 120.701829 25.533152 96.168677 60.8509145 1.784267109 0.035578 83 37 SH8702 8702 LSR1 / U2 RNA U2 151 169 23.93208 84.622397 54.2772385 1.734617744 0.035564 130 37 SH19636 19636 RNA14 2.2 32.955809 113.90412 73.4299645 1.865873318 0.035557 51 41 SH4690 4690 snR4 5' - 3 3 28.529338 106.918089 67.7237135 1.830740764 0.035548 89 35 SH5393 5393 snR31 snR31 31 46 26.542862 101.038402 63.790632 1.804756905 0.035481 30 19 SH18153 18153 YLR426W_12_987057_988108_INTRON_81_151 5' exon 29.431101 137.138402 29.431101 108.707301 69.069201 1.839284432 0.035448 183 35 SH1865 1865 Leu9 tRNA 66 80 50.437383 138.43483 94.4361065 1.975138073 0.035438 158 3 SH2034 2034 Lys3 3' flank 24.704358 90.159025 57.4316915 1.759151607 0.035428 194 6 SH12717 12717 MT ORF 8 (hypothetical) 3' 24.310372 110.667335 24.310372 87.356963 55.8336675 1.746896156 0.035425 171 89 SH20578 20578 YHR016C spliced 32.855855 113.775182 73.3155185 1.86519591 0.035418 4 27 SH9361 9361 RUF1 RUF1 381 397 23.901327 84.421104 54.1612155 1.733688402 0.03536 81 52 SH11592 11592 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4846 4859 87.838777 190.96618 139.4024785 2.144270495 0.03536 65 23 SH588 588 Gln1 5' flank 46.934462 133.558194 90.246328 1.95542954 0.035356 22 91 SH15915 15915 YDL083C_4_307788_306925_INTRON_25_456 intron 24.469625 111.965812 24.469625 88.496187 56.482906 1.751917033 0.035332 61 39 SH8782 8782 LSR1 / U2 RNA U2 551 568 50.78203 138.929406 94.855718 1.977063516 0.035283 50 86 SH11231 11231 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3041 3064 1068.45966 1476.349647 1272.404654 3.104625249 0.035239 40 19 SH17562 17562 YJL189W_10_75932_76473_INTRON_7_392 intron 28.75167 135.13005 28.75167 107.37838 68.065025 1.832924008 0.035229 31 94 SH11534 11534 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4556 4573 997.524094 1388.477058 1193.000576 3.076640653 0.035215 122 93 SH10500 10500 RUF8 RUF8 426 445 26.000871 98.462261 62.231566 1.79401073 0.035164 107 43 SH20128 20128 YDL082W spliced 27.027807 103.404534 65.2161705 1.814355293 0.035143 123 99 SH6934 6934 snR58 snR58 31 47 26.26685 99.738684 63.002767 1.799359624 0.035143 33 89 SH12574 12574 MT_15S MT_15S 25.182689 117.82361 25.182689 93.640921 59.411805 1.773872747 0.035134 103 77 SH15303 15303 YAL001C_1_151163_147591_INTRON_71_160 exon/intron 179.875212 498.304213 179.875212 319.429001 249.6521065 2.397335235 0.035132 75 99 SH13448 13448 MT COX1 intronic 25.981649 123.355139 25.981649 98.37349 62.1775695 1.793633742 0.035123 43 60 SH17858 17858 YKR095W-A_11_625432_625839_INTRON_39_113 3' exon 70.339404 235.520339 70.339404 166.180935 118.2601695 2.072838497 0.035098 137 30 SH21731 21731 copy of SH12131 26.715567 101.90329 64.3094285 1.80827465 0.035064 94 83 SH9584 9584 RUF3 RUF3 306 325 22.655949 75.997283 49.326616 1.693081322 0.035048 146 51 SH9722 9722 RUF4 RUF4 386 403 26.475653 100.75131 63.6134815 1.803549165 0.035023 15 24 SH4322 4322 telomerase RNA telomerase 646 665 22.784775 76.830353 49.807564 1.697295302 0.034982 31 82 SH799 799 Glu1 tRNA 11 27 5351.085256 6129.453065 5740.269161 3.758932257 0.034972 11 37 SH18588 18588 YNL050C_14_534978_534075_INTRON_18_108 intron 25.330744 119.075299 25.330744 94.744555 60.0376495 1.778423681 0.034914 19 45 SH16036 16036 YDL191W_4_117665_118518_INTRON_4_494 intron 25.533212 120.768199 25.533212 96.234987 60.8840995 1.784503887 0.034911 31 58 SH12342 12342 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.974862 135.816646 28.974862 107.841784 68.408323 1.835108944 0.034861 209 55 SH4301 4301 telomerase RNA telomerase 541 558 23.973181 84.97884 54.4760105 1.736205295 0.034857 172 71 SH6492 6492 snR46 5' 23.996275 85.147616 54.5719455 1.736969437 0.034819 77 50 SH8146 8146 snoRNA cluster 3; intergenic 23.640075 105.257345 23.640075 82.61727 53.1286725 1.725328965 0.034798 95 69 SH13993 13993 MT COB intronic 23.105553 101.031644 23.105553 78.926091 51.015822 1.707704889 0.034791 164 52 SH13082 13082 MT COX1 COX1ai3 24.30872 110.713316 24.30872 87.404596 55.856658 1.747074948 0.034773 106 102 SH16543 16543 YER133W_5_432491_433954_INTRON_178_702 5' exon 24.266182 110.36319 24.266182 87.097008 55.681595 1.745711667 0.034764 166 23 SH17719 17719 YKL081W_11_282533_284097_INTRON_206_531 3' exon 25.945367 123.173226 25.945367 98.227859 62.086613 1.792997969 0.03476 35 34 SH11273 11273 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3251 3269 29.210814 108.314289 68.7625515 1.837351983 0.034747 151 43 SH14000 14000 MT COB intronic 26.136221 124.27941 26.136221 99.143189 62.639705 1.796849704 0.034744 94 18 SH5692 5692 snR34 snR34 381 399 27.994192 105.892819 66.9435055 1.82570845 0.034737 21 63 SH20469 20469 YGL187C spliced 26.252739 99.703669 62.978204 1.799190271 0.034725 83 15 SH15372 15372 YBL027W_2_168385_169338_INTRON_3_386 intron 25.910099 122.971911 25.910099 98.061812 61.9859555 1.7922933 0.034725 65 35 SH17515 17515 YJL136C_10_156971_156248_INTRON_25_484 intron 24.506294 112.318343 24.506294 88.812049 56.6591715 1.75327022 0.03472 48 30 SH12985 12985 MT COX1 COX1ai2 25.011881 116.453428 25.011881 92.441547 58.726714 1.768835701 0.034696 121 83 SH2466 2466 Phe5 3' flank 22.74774 76.616258 49.681999 1.696199062 0.034667 130 43 SH13381 13381 MT COX1 Exon 5b 26.112303 124.150696 26.112303 99.038393 62.575348 1.796403274 0.034617 180 13 SH19466 19466 ADH1 38.129282 121.200423 79.6648525 1.901266756 0.034578 136 101 SH6152 6152 snR39B 3' 24.134368 86.162148 55.148258 1.741531799 0.034569 5 93 SH17757 17757 YKL157W_11_154993_158183_INTRON_282_664 intron 28.281807 133.762341 28.281807 106.480534 67.3811705 1.828538551 0.034547 202 26 SH9332 9332 RUF1 RUF1 236 253 23.737499 83.328189 53.532844 1.728620316 0.034544 190 71 SH14420 14420 MT 21S rRNA 21S rRNA3 23.545319 104.521452 23.545319 81.976133 52.760726 1.722310763 0.034496 194 63 SH7716 7716 snoRNA cluster1 snR77 27.772413 132.23202 27.772413 105.459607 66.61601 1.823578617 0.034494 20 33 SH171 171 Arg2 5' flank 24.696366 90.188352 57.442359 1.759232267 0.034493 183 57 SH5335 5335 snR30 snR30 526 542 26.598736 101.38766 63.993198 1.806133814 0.03447 10 76 SH12527 12527 MT_ORF6 + ORF7 (hypothetical) ORF6/7 25.262347 118.549762 25.262347 94.287415 59.774881 1.77651872 0.034462 185 57 SH20292 20292 YDR500C spliced 328.168807 524.245146 426.2069765 2.629620554 0.034447 58 55 SH18016 18016 YLR287C-A_12_713158_712537_INTRON_4_433 3' exon 27.512557 131.449264 27.512557 104.936707 66.224632 1.821019554 0.034444 189 78 SH14757 14757 MT ORF11; tRNA Leu; tRNA Gln ORF11 27.723028 132.086583 27.723028 105.363555 66.5432915 1.823104279 0.034429 52 12 SH13199 13199 MT COX1 Exon4 24.899253 115.553476 24.899253 91.654223 58.276738 1.765495234 0.03441 60 90 SH17038 17038 YGR183C_7_859471_859058_INTRON_4_216 intron 23.421374 103.537959 23.421374 81.116585 52.2689795 1.718244021 0.034387 204 14 SH4785 4785 snR5 snR5 96 115 23.36983 80.758386 52.064108 1.716538432 0.034366 117 63 SH13387 13387 MT COX1 Exon 5b 25.241177 118.387228 25.241177 94.146051 59.693614 1.775927873 0.034323 68 43 SH7021 7021 snR60 3' 24.23301 86.897228 55.565119 1.744802249 0.034319 39 24 SH1358 1358 Ile3 3' flank 25.371904 95.106298 60.239101 1.779878482 0.034301 210 7 SH20505 20505 YGR027C spliced 25.937415 98.226384 62.0818995 1.792964996 0.034285 117 93 SH17414 17414 YIL106W_9_166412_167441_INTRON_21_105 intron/exon 27.136709 130.138985 27.136709 104.002276 65.5694925 1.816701822 0.034275 15 82 SH16010 16010 YDL137W_4_216158_217074_INTRON_1_332 intron 26.23922 124.914385 26.23922 99.675165 62.9571925 1.799045353 0.03426 36 55 SH20449 20449 YGL103W spliced 39.364964 122.980552 81.172758 1.909410302 0.034237 148 54 SH8791 8791 LSR1 / U2 RNA U2 596 612 24.717543 90.365518 57.5415305 1.759981409 0.034218 19 77 SH20741 20741 YJL191W spliced 24.563646 89.273934 56.91879 1.755255659 0.03413 4 60 SH6239 6239 snR42 5' 23.723605 83.27035 53.4969775 1.728329246 0.034078 24 26 SH7435 7435 snR69 snR69 76 94 24.144579 86.280602 55.2125905 1.742038124 0.034072 190 19 SH9017 9017 snR17a / U3a U3a 371 388 23.604005 82.426013 53.015009 1.724398839 0.034067 12 39 SH9967 9967 RUF5-1 RUF5-1 641 657 27.420623 104.772059 66.096341 1.820177418 0.03405 159 56 SH17648 17648 YJR145C_10_702761_701720_INTRON_15_270 intron 24.600417 113.144945 24.600417 89.544528 57.0724725 1.756426688 0.034038 210 71 SH10259 10259 RUF7 5' 24.615686 89.654723 57.1352045 1.756903786 0.034025 186 71 SH20495 20495 YGL251C spliced 25.550982 96.400943 60.9759625 1.785158664 0.034013 157 101 SH9871 9871 RUF5-1 RUF5-1 161 173 30.877074 111.092916 70.984995 1.851166556 0.034008 128 22 SH20665 20665 YIL052C spliced 44.664979 130.442048 87.5535135 1.942273579 0.034002 156 38 SH19056 19056 YOR234C_15_779404_778554_INTRON_20_546 intron 26.871646 128.61517 26.871646 102.743524 64.807585 1.811625838 0.033982 184 6 SH13024 13024 MT COX1 COX1ai2 26.345005 125.55084 26.345005 100.205835 63.27542 1.801235037 0.033973 207 62 SH16298 16298 YDR450W_4_1359912_1360787_INTRON_48_482 intron 28.536627 134.559262 28.536627 107.022635 67.779631 1.8310992 0.033963 179 64 SH19005 19005 YOR122C_15_552886_552297_INTRON_14_222 3' exon 27.104762 129.980406 27.104762 103.875644 65.490203 1.816176337 0.03393 169 61 SH16621 16621 YFL039C_6_54695_53260_INTRON_11_318 intron 26.29855 125.28497 26.29855 99.98642 63.142485 1.80032167 0.033924 41 85 SH2354 2354 Phe3 3' flank 22.238005 73.425016 47.8315105 1.679714096 0.033906 88 89 SH15131 15131 MT tRNA Phe tRNA 24.021481 108.431228 24.021481 85.409747 54.715614 1.738111277 0.033906 150 15 SH3545 3545 Tyr2 5' flank - tRNA10 10 26.70431 101.944079 64.3241945 1.808374356 0.033876 91 10 SH7067 7067 snR62 3' 23.955293 84.938369 54.446831 1.735972607 0.033872 128 92 SH2467 2467 Phe5 3' flank 22.896164 77.639184 50.267674 1.70128879 0.03384 115 41 SH21903 21903 copy of SH19203 24.115809 86.095408 55.1056085 1.741195802 0.033825 208 59 SH13606 13606 MT ATP8/AAP1 ATP8 / 3' 24.177797 109.721465 24.177797 86.543668 55.3607325 1.743201828 0.033815 148 55 SH11160 11160 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S/ITS1 2686 2710 22.719 76.497134 49.608067 1.695552305 0.033814 30 63 SH11284 11284 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3306 3322 24.935753 91.974717 58.455235 1.766823411 0.033806 133 38 SH8964 8964 snR17a / U3a U3a 106 118 78.772198 178.258257 128.5152275 2.108954589 0.033776 59 8 SH5135 5135 snR11 3' 25.540323 96.369705 60.955014 1.785009435 0.033754 150 69 SH21188 21188 YOL120C spliced 24.749294 90.636878 57.693086 1.76112377 0.033748 211 104 SH18910 18910 YOL120C_15_94401_93394_INTRON_113_559 intron 23.562845 104.731434 23.562845 82.168589 52.865717 1.723174127 0.03369 46 69 SH19885 19885 Positive Control 1 24.186267 86.616806 55.4015365 1.74352181 0.033683 90 65 SH21875 21875 copy of SH18250 21.690463 70.078469 45.884466 1.661665682 0.033642 196 41 SH97 97 Ala2 3' flank 24.229585 86.936577 55.583081 1.744942616 0.033614 168 25 SH4484 4484 U3b (snR17b) 5' 22.169297 73.015156 47.5922265 1.677536023 0.033592 69 20 SH11318 11318 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3476 3496 2643.545695 3306.281677 2974.913686 3.47347437 0.033559 70 95 SH6046 6046 snR37 snR37 146 162 148.164753 275.824201 211.994477 2.326324547 0.033515 7 94 SH12642 12642 MT_15S MT_15S 26.4291 126.075675 26.4291 100.646575 63.5378375 1.80303243 0.033514 114 53 SH17915 17915 YLR061W_12_263195_263949_INTRON_13_401 intron 24.469785 112.135345 24.469785 88.66556 56.5676725 1.75256831 0.033481 132 44 SH14802 14802 "MT tRNAs (Lys, Arg1, Gly)" intergenic 25.402983 119.818204 25.402983 95.415221 60.409102 1.78110238 0.033479 180 103 SH18290 18290 YML073C_13_124172_123227_INTRON_16_430 5' exon 39.160071 160.898745 39.160071 122.738674 80.9493725 1.908213487 0.033464 71 81 SH19082 19082 YOR293W_15_867094_867848_INTRON_53_489 intron 22.485686 96.515163 22.485686 75.029477 48.7575815 1.688042155 0.033462 196 27 SH18537 18537 YMR230W_13_732413_733140_INTRON_53_462 intron 26.296511 125.30952 26.296511 100.013009 63.15476 1.800406089 0.03346 143 97 SH15532 15532 YBR078W_2_393082_394818_INTRON_59_388 5' exon 25.271533 118.72346 25.271533 94.451927 59.86173 1.777149264 0.033457 144 103 SH4402 4402 telomerase RNA telomerase 1046 1065 23.29011 80.280105 51.7851075 1.714204882 0.033451 154 92 SH21361 21361 Ile2_3 spliced 25.585504 96.608226 61.096865 1.786018926 0.03345 111 50 SH6865 6865 snR56 5' 44.595945 130.381048 87.4884965 1.941950953 0.033439 68 14 SH13732 13732 MT COB Exon1 25.342776 119.319809 25.342776 94.977033 60.1599045 1.779307138 0.033432 66 99 SH8916 8916 LSR1 / U2 RNA 3' 100.649385 209.425018 155.0372015 2.190435921 0.033414 42 68 SH5770 5770 snR35 snR35 36 53 23.080519 78.873058 50.9767885 1.707372472 0.033403 149 61 SH21090 21090 YNL012W spliced 141.985009 267.293672 204.6393405 2.310989128 0.033378 98 91 SH13013 13013 MT COX1 COX1ai2 66.221782 225.789128 66.221782 160.567346 113.394564 2.054592235 0.033364 203 100 SH2690 2690 Pro4 3' flank 29.52268 109.007677 69.2651785 1.840514958 0.033361 116 43 SH900 900 Glu3 tRNA 11 27 4188.631944 4950.270669 4569.451307 3.659864054 0.03336 115 83 SH5586 5586 snR33 3' 24.581619 89.472832 57.0272255 1.756082243 0.033359 96 103 SH8295 8295 snoRNA cluster4 intergenic 23.682438 105.724705 23.682438 83.042267 53.3623525 1.727234967 0.033349 19 25 SH3866 3866 RNaseP RNaseP 296 312 32.410418 113.277346 72.843882 1.862393082 0.033334 23 62 SH7841 7841 snoRNA cluster1 snR74 24.174297 109.736915 24.174297 86.562618 55.3684575 1.743262425 0.033326 187 28 SH2808 2808 Pro6 3' flank 1887.023168 2457.478115 2172.250642 3.336909934 0.033326 184 95 SH15712 15712 YBR220C_2_663261_662457_INTRON_302_722 intron 26.63156 127.270723 26.63156 101.639163 64.1353615 1.807097547 0.033299 45 79 SH16745 16745 YGL076C_7_365994_364333_INTRON_565_1032 intron 21.977853 92.831016 21.977853 71.853163 46.915508 1.671316423 0.033246 172 69 SH15657 15657 YBR189W_2_604466_605466_INTRON_8_420 intron 54.312253 197.281798 54.312253 143.969545 99.140899 1.996252853 0.033238 84 53 SH6123 6123 snR39B 5' 25.902608 98.14098 62.021794 1.792544324 0.03323 132 35 SH11948 11948 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6626 6641 33.244198 114.435128 73.839663 1.868289706 0.03323 13 50 SH5089 5089 snR11 snR11 46 64 23.12472 79.176215 51.1504675 1.708849607 0.033225 37 4 SH7196 7196 snR64 snR64 46 63 68.608476 163.943812 116.276144 2.065490621 0.033216 195 31 SH6710 6710 snR49 snR49 76 93 26.526077 101.139208 63.8326425 1.805042823 0.033191 132 94 SH9585 9585 RUF3 RUF3 311 332 24.039073 85.601176 54.8201245 1.738940018 0.033179 204 103 SH3003 3003 Ser2 5' flank 27.817242 105.624237 66.7207395 1.824260851 0.033171 76 31 SH377 377 Asn1 5' flank 23.744892 83.501064 53.622978 1.729350929 0.033164 203 55 SH3822 3822 RNaseP RNaseP 76 93 42.03192 126.828847 84.4303835 1.926498762 0.033163 41 29 SH16074 16074 YDR025W_4_491510_492319_INTRON_46_384 5' exon 27.780951 132.332866 27.780951 105.551915 66.666433 1.823907219 0.033154 198 31 SH1849 1849 Leu9 5' flank - tRNA3 3 28.762222 107.517782 68.140002 1.833402142 0.033153 42 46 SH1177 1177 His1 3' flank 30.673731 110.849222 70.7614765 1.849796886 0.033152 144 9 SH13088 13088 MT COX1 COX1ai3 26.537222 126.733434 26.537222 101.196212 63.866717 1.805274592 0.033149 53 17 SH9372 9372 RUF1 RUF1 436 452 29.069039 108.127439 68.598239 1.836312967 0.033127 67 17 SH4036 4036 SRP RNA SRP RNA 71 88 23.096238 78.999972 51.048105 1.707979625 0.033099 41 72 SH6262 6262 snR42 snR42 91 107 27.103444 103.937859 65.5206515 1.816378207 0.033088 31 78 SH7932 7932 snoRNA cluster1 snR72 30.017341 138.926855 30.017341 109.909514 69.9634275 1.844871077 0.033085 143 8 SH11665 11665 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5211 5224 26.259501 99.864728 63.0621145 1.799768529 0.033083 213 67 SH191 191 Arg2 71-73 + 3' flank 71 3' flank 23.484158 81.668583 52.5763705 1.720790602 0.03307 9 104 SH10809 10809 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 931 948 133.686209 255.865974 194.7760915 2.289535647 0.033037 105 8 SH9661 9661 RUF4 RUF4 81 98 24.669589 90.133033 57.401311 1.758921811 0.033018 20 55 SH62 62 Ala2 5' flank 38.528366 121.87014 80.199253 1.904170323 0.032975 177 33 SH4250 4250 telomerase RNA telomerase 286 305 23.251547 80.05267 51.6521085 1.713088055 0.032965 106 53 SH2105 2105 Met1 5' flank 23.817911 84.038028 53.9279695 1.731814069 0.032961 76 18 SH19710 19710 Negative Control 56.534459 147.098733 101.816596 2.007818573 0.032946 158 97 SH15568 15568 YBR084C-A_2_415219_414144_INTRON_3_508 intron 28.909869 135.732562 28.909869 107.822693 68.366281 1.834841956 0.032946 15 78 SH19043 19043 YOR234C_15_779404_778554_INTRON_20_546 intron 26.724613 127.841538 26.724613 102.116925 64.420769 1.809025905 0.032941 66 34 SH11686 11686 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5316 5336 1114.656155 1535.677464 1325.16681 3.12227055 0.032941 69 76 SH10224 10224 RUF6 RUF6 966 980 159.962375 292.261452 226.1119135 2.354323445 0.032936 158 68 SH19732 19732 Negative Control 26.555146 101.300211 63.9276785 1.805688934 0.032928 180 73 SH14178 14178 MT COB intron/exon6 27.873326 132.624973 27.873326 105.751647 66.8124865 1.824857635 0.032917 127 80 SH16713 16713 YGL031C_7_438393_437938_INTRON_1_456 intron 24.183168 109.847806 24.183168 86.664638 55.423903 1.743697106 0.032908 143 93 SH6061 6061 snR37 snR37 221 240 27.360797 104.714073 66.037435 1.819790196 0.032906 21 87 SH12232 12232 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 22.434751 96.182198 22.434751 74.747447 48.591099 1.686556722 0.032898 178 55 SH19654 19654 SIR1 2.2 23.639095 82.775153 53.207124 1.725969785 0.032894 4 104 SH3502 3502 Tyr1 tRNA-intron/exon 51 67 145.087916 271.682491 208.3852035 2.318866878 0.032876 101 34 SH2210 2210 Phe1 5' flank 27.633636 105.270895 66.4522655 1.822509792 0.032852 204 39 SH16557 16557 YER133W_5_432491_433954_INTRON_178_702 intron 26.814377 128.372959 26.814377 102.558582 64.6864795 1.810813516 0.032842 201 29 SH15258 15258 MT 9S rRNA 5' 24.165494 109.710633 24.165494 86.545139 55.3553165 1.743159338 0.032817 120 37 SH9486 9486 RUF2 3' 24.18403 86.683659 55.4338445 1.743774999 0.032767 97 79 SH19680 19680 SIR1 2.4 28.367251 106.752575 67.559913 1.829689082 0.032761 72 99 SH4447 4447 telomerase RNA telomerase 1271 1283 4891.057862 5673.110542 5282.084202 3.72280532 0.032745 208 70 SH13028 13028 MT COX1 COX1ai2 24.833056 115.168057 24.833056 91.335001 58.0840285 1.76405673 0.032724 69 52 SH1514 1514 Leu3 tRNA-intron 41 57 29.235284 108.480056 68.85767 1.837952323 0.032705 190 17 SH15503 15503 YBR048W_2_332790_333771_INTRON_46_556 5' exon 25.840628 122.726959 25.840628 97.886331 61.8634795 1.791434343 0.032683 116 65 SH16404 16404 YER056C-A_5_270183_269421_INTRON_38_434 intron 55.954984 201.272809 55.954984 146.317825 101.1364045 2.00490751 0.032641 8 67 SH230 230 Arg3 6-22 6 22 26.225719 99.737239 62.981479 1.799212855 0.032637 21 48 SH11120 11120 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2486 2501 29.52636 109.057297 69.2918285 1.840682022 0.032628 172 92 SH8749 8749 LSR1 / U2 RNA U2 386 400 27.632739 105.283959 66.458349 1.822549548 0.032585 4 29 SH7615 7615 snR189 snR189 146 166 23.806921 83.995988 53.9014545 1.731600485 0.032549 147 15 SH2773 2773 Pro6 5' flank 26.848553 102.749052 64.7988025 1.81156698 0.032529 44 86 SH8069 8069 snoRNA cluster 2 snR61 29.504373 137.525418 29.504373 109.021045 69.262709 1.840499474 0.032509 101 37 SH12550 12550 MT_15S 5' 23.682492 105.799845 23.682492 83.117353 53.3999225 1.727540627 0.032489 113 26 SH19799 19799 Negative Control 28.511681 107.057361 67.784521 1.831130531 0.032476 123 65 SH20816 20816 YKL190W spliced 26.66795 101.880549 64.2742495 1.808037014 0.032475 122 14 SH12564 12564 MT_15S MT_15S 30.574211 140.317498 30.574211 110.743287 70.658749 1.849165944 0.032474 177 54 SH17480 17480 YJL001W_10_434855_435618_INTRON_66_181 3' exon 28.873088 135.649941 28.873088 107.776853 68.3249705 1.834579453 0.032472 186 56 SH10421 10421 RUF8 RUF8 31 51 26.970206 103.342553 65.1563795 1.813956944 0.032471 8 81 SH14704 14704 MT tRNA thr2 tRNA 58.578486 207.52404 58.578486 149.945554 104.26202 2.018126135 0.032455 162 95 SH2179 2179 Met2 tRNA 26 40 30.285208 110.331011 70.3081095 1.84700542 0.032428 83 45 SH8271 8271 snoRNA cluster4 snR67 31.422896 142.37349 31.422896 111.950594 71.686745 1.855438861 0.032419 182 38 SH21692 21692 copy of SH10452 25.981503 98.582083 62.281793 1.794361107 0.032414 36 104 SH5238 5238 snR30 snR30 41 56 28.209217 106.45684 67.3330285 1.828228149 0.032392 38 9 SH13823 13823 MT COB Cytbi2 24.510836 112.570308 24.510836 89.059472 56.785154 1.754234808 0.032363 103 92 SH16075 16075 YDR025W_4_491510_492319_INTRON_46_384 exon/intron 24.936055 116.052102 24.936055 92.116047 58.526051 1.767349221 0.032333 198 62 SH12220 12220 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.499098 134.540621 28.499098 107.041523 67.7703105 1.831039475 0.032312 22 40 SH2869 2869 Pro7 3' flank 23.41882 81.275674 52.347247 1.718893847 0.032304 61 75 SH13983 13983 MT COB intronic 30.530344 140.221039 30.530344 110.690695 70.6105195 1.848869407 0.032283 76 64 SH17947 17947 YLR128W_12_398531_399434_INTRON_4_97 intron 158.772694 448.50646 158.772694 290.733766 224.75323 2.351705942 0.032282 135 45 SH4192 4192 telomerase RNA 5' - 15 15 29.778858 109.573243 69.6760505 1.843083525 0.032264 47 69 SH8887 8887 LSR1 / U2 RNA U2 1076 1093 25.915033 98.277939 62.096486 1.793067024 0.032226 115 92 SH5580 5580 snR33 3' 23.941347 84.987189 54.464268 1.736111671 0.0322 76 103 SH21738 21738 copy of SH12343 34.668355 116.490743 75.579549 1.878404296 0.032175 57 25 SH19989 19989 YBL092W spliced 26.019892 98.785467 62.4026795 1.795203238 0.032165 146 95 SH579 579 Gln1 5' flank 26.16344 99.475098 62.819269 1.798092878 0.032161 210 42 SH13793 13793 MT COB intronic 24.490793 112.426575 24.490793 88.935782 56.7132875 1.753684823 0.032154 104 75 SH9885 9885 RUF5-1 RUF5-1 231 243 27.849921 105.74984 66.7998805 1.824775686 0.032108 184 21 SH11844 11844 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6106 6124 230.45706 389.8008 310.12893 2.491542281 0.032084 213 66 SH7584 7584 snR189 5' - 15 -9 15 25.888028 98.159394 62.023711 1.792557747 0.032084 171 20 SH2316 2316 Phe3 5' flank 27.69598 105.442435 66.5692075 1.823273387 0.032041 139 21 SH15649 15649 YBR189W_2_604466_605466_INTRON_8_420 intron 24.929343 116.025059 24.929343 92.095716 58.5125295 1.767248873 0.032034 178 59 SH21213 21213 YOR096W spliced 42.793643 127.975202 85.3844225 1.931378645 0.032012 135 93 SH19240 19240 YPL090C_16_378390_377286_INTRON_7_400 intron 31.795458 143.29094 31.795458 112.495482 72.14547 1.858209067 0.032007 40 8 SH908 908 Glu3 tRNA 51 63 33.038512 114.213192 73.625852 1.867030333 0.032 116 71 SH5249 5249 snR30 snR30 96 111 27.837342 105.73063 66.783986 1.824672336 0.031998 30 60 SH18650 18650 YNL112W_14_413636_416278_INTRON_1274_2275 intron 22.693913 98.171754 22.693913 76.477841 49.585877 1.695357999 0.031971 186 59 SH17227 17227 YHR077C_8_255757_252375_INTRON_7_119 5' exon 26.605874 127.227413 26.605874 101.621539 64.1137065 1.806950885 0.031965 152 102 SH18014 18014 YLR287C-A_12_713158_712537_INTRON_4_433 intron/exon 22.954381 100.120997 22.954381 78.166616 50.5604985 1.703811347 0.03194 152 36 SH18522 18522 YMR225C_13_721402_720959_INTRON_59_205 intron 23.194958 101.94181 23.194958 79.746852 51.470905 1.711561804 0.031922 210 59 SH12929 12929 MT COX1 COX1ai2 554.843743 1382.573645 554.843743 828.729902 691.7868225 2.839972285 0.031901 118 56 SH17261 17261 YHR101C_8_315970_314876_INTRON_111_197 intron 25.614712 121.481654 25.614712 96.866942 61.240827 1.787041047 0.03188 67 73 SH262 262 Arg4 5' flank 23.820003 84.150513 53.985258 1.732275181 0.031852 54 85 SH16021 16021 YDL189W_4_122079_123590_INTRON_1_99 intron 24.424947 111.921798 24.424947 88.496851 56.460899 1.751747789 0.031833 172 74 SH18506 18506 YMR194W_13_651144_651909_INTRON_17_479 intron 36.155126 153.699617 36.155126 118.544491 77.3498085 1.888459243 0.031826 159 91 SH10832 10832 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1046 1066 1304.034886 1769.093345 1536.564116 3.186550687 0.031822 146 47 SH19641 19641 RNA14 2.2 30.536478 110.725077 70.6307775 1.848993987 0.031805 207 31 SH967 967 Gly1 3' flank 23.815916 84.125673 53.9707945 1.732158811 0.031803 109 2 SH12840 12840 MT COX1 COX1ai1 24.315575 111.040663 24.315575 87.725088 56.0203315 1.748345674 0.031796 33 9 SH13538 13538 MT COX1 intronic 24.321132 111.086399 24.321132 87.765267 56.0431995 1.748522921 0.031786 193 15 SH16357 16357 YDR500C_4_1450856_1450201_INTRON_8_396 intron 28.271106 133.887402 28.271106 106.616296 67.443701 1.828941394 0.031767 180 54 SH14115 14115 MT COB intronic 24.734507 114.449871 24.734507 90.715364 57.7249355 1.761363456 0.031762 127 92 SH4764 4764 snR5 5' - 10 10 27.308424 104.672682 65.990553 1.819481768 0.031732 172 58 SH14134 14134 MT COB intronic 22.348419 95.635831 22.348419 74.287412 48.3179155 1.68410819 0.031714 173 85 SH15847 15847 YDL075W_4_322225_322987_INTRON_58_478 intron 30.201404 139.45003 30.201404 110.248626 70.225015 1.846491841 0.031709 107 12 SH12026 12026 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7016 7038 24.121579 86.330903 55.226241 1.742145484 0.031676 105 17 SH8728 8728 LSR1 / U2 RNA U2 281 300 23.521309 82.049577 52.785443 1.722514171 0.031671 46 72 SH10750 10750 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 636 653 32.059335 112.882741 72.471038 1.860164482 0.031653 150 85 SH21713 21713 copy of SH11293 68.578259 164.043003 116.310631 2.065619412 0.031646 33 12 SH19244 19244 YPL090C_16_378390_377286_INTRON_7_400 intron/exon 24.092535 109.216962 24.092535 86.124427 55.108481 1.74121844 0.03164 196 46 SH15992 15992 YDL136W_4_217600_218367_INTRON_4_408 intron 24.263066 110.622981 24.263066 87.359915 55.8114905 1.746723621 0.031635 162 71 SH18935 18935 YOL121C_15_92849_92025_INTRON_21_410 intron 24.340718 111.259508 24.340718 87.91879 56.129754 1.749193139 0.031621 190 30 SH11363 11363 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3701 3716 31.04534 111.4605 71.25292 1.852802667 0.031617 21 53 SH1662 1662 Leu5 3' flank 26.562294 101.439799 64.0010465 1.806187075 0.031606 196 16 SH16895 16895 YGL226C-A_7_73156_72747_INTRON_22_170 intron 26.071103 124.148523 26.071103 99.07742 62.5742615 1.796395733 0.031572 210 51 SH6197 6197 snR40 snR40 46 61 28.40377 106.89434 67.649055 1.830261734 0.031549 174 38 SH10267 10267 RUF7 5' 285.06114 465.505102 375.283121 2.574359032 0.03154 16 67 SH2631 2631 Pro3 3' flank 22.675921 76.395425 49.535673 1.694918068 0.031538 212 76 SH18474 18474 YMR143W_13_551927_552902_INTRON_25_568 intron 24.892634 115.771247 24.892634 91.878613 58.3856235 1.766305922 0.031519 180 23 SH8792 8792 LSR1 / U2 RNA U2 601 620 22.988484 78.425569 50.7070265 1.705068144 0.031474 176 82 SH11094 11094 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2356 2369 70.119193 166.207778 118.1634855 2.072483293 0.031463 152 89 SH16669 16669 YFR032C-A_6_223758_223245_INTRON_1_331 intron 29.95829 138.872607 29.95829 109.914317 69.9363035 1.844702674 0.031386 176 94 SH15349 15349 YBL018C_2_186436_185960_INTRON_48_122 intron/exon 24.145526 109.675796 24.145526 86.53027 55.337898 1.743022659 0.031386 140 40 SH21442 21442 TH294 - control cDNA - flipped; WTP_224 73.191927 170.590793 121.89136 2.085972923 0.031359 190 51 SH7786 7786 snoRNA cluster1 intergenic/snR75 23.743781 106.39597 23.743781 83.652189 53.697985 1.729957989 0.031345 198 14 SH12881 12881 MT COX1 COX1ai1 25.076152 117.307086 25.076152 93.230934 59.153543 1.771980762 0.031311 26 78 SH15699 15699 YBR220C_2_663261_662457_INTRON_302_722 intron 48.435028 183.355177 48.435028 135.920149 92.1775885 1.964625342 0.0313 132 24 SH3867 3867 RNaseP RNaseP 301 317 27.934662 105.966457 66.9505595 1.825754211 0.031295 101 84 SH20715 20715 YJL041W spliced 25.728013 97.453593 61.590803 1.789515866 0.031294 210 25 SH20992 20992 YML073C spliced 28.164285 106.429099 67.296692 1.827993717 0.031287 35 51 SH457 457 Asp1 3' flank 24.394767 88.333463 56.364115 1.751002692 0.031272 69 5 SH11906 11906 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6416 6434 222.351507 378.812244 300.5818755 2.47796279 0.031254 155 22 SH13450 13450 MT COX1 intronic 24.437094 112.073459 24.437094 88.636365 56.5367295 1.752330682 0.031248 186 5 SH1600 1600 Leu4 3' flank 26.53824 101.352451 63.9453455 1.805808938 0.031245 183 82 SH6323 6323 snR42 3' 24.065407 85.967425 55.016416 1.740492295 0.03121 64 73 SH8496 8496 snR19 / U1 RNA 5' 29.746661 109.573115 69.659888 1.842982772 0.031183 197 74 SH5286 5286 snR30 snR30 281 295 27.605661 105.309012 66.4573365 1.822542931 0.031155 41 84 SH20038 20038 YBR186W spliced 26.438325 100.87807 63.6581975 1.803854337 0.031148 27 77 SH881 881 Glu3 5' flank 33.769534 115.294424 74.531979 1.872342653 0.031147 41 30 SH3582 3582 Val1 5' flank 25.58609 96.786582 61.186336 1.786654447 0.031137 204 75 SH13242 13242 MT COX1 COX1-ai4 23.920569 107.85499 23.920569 84.934421 54.427495 1.735818347 0.031118 13 60 SH17496 17496 YJL041W_10_365480_368069_INTRON_2_119 intron 22.412495 96.154153 22.412495 74.741658 48.5770765 1.686431374 0.031095 11 104 SH10584 10584 RUF8 RUF8 846 863 27.229092 104.547247 65.8881695 1.818807442 0.031077 162 72 SH11725 11725 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5511 5526 34.610675 116.474346 75.5425105 1.878191414 0.03106 103 55 SH18254 18254 YML034W_13_209525_212155_INTRON_1921_2046 3' exon 61.769033 215.309288 61.769033 154.540255 108.154644 2.034045172 0.031049 93 22 SH7319 7319 snR66 86 + 3' 86 24.305558 87.723808 56.014683 1.748301883 0.031023 148 18 SH21264 21264 YPL081W spliced 34.947718 116.943408 75.945563 1.880502406 0.031009 159 95 SH11684 11684 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5306 5323 263.3986 435.580007 349.4893035 2.543433888 0.030992 33 60 SH3297 3297 Thr2 3' flank 22.937489 78.131972 50.5347305 1.703589954 0.030985 153 86 SH19745 19745 Negative Control 122.171572 240.159507 181.1655395 2.258075592 0.030983 101 72 SH18199 18199 YML024W_13_225889_226697_INTRON_4_401 intron 25.267454 118.933665 25.267454 94.666211 59.9668325 1.77791111 0.03094 142 75 SH14795 14795 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys 24.677477 114.064905 24.677477 90.387428 57.5324525 1.759912888 0.030882 58 36 SH20019 20019 YBR089C-A spliced 27.18693 104.473459 65.8301945 1.818425138 0.030855 4 6 SH6268 6268 snR42 snR42 121 143 22.531836 75.529478 49.030657 1.690467713 0.030762 142 26 SH10619 10619 RUF8 3' 25.565237 96.716006 61.1406215 1.786329849 0.030753 135 40 SH3001 3001 Ser2 5' flank 25.589777 96.83451 61.2121435 1.786837588 0.030738 74 50 SH14871 14871 MT tRNA Ser2; tRNA Arg2 3' 25.598824 121.476895 25.598824 96.878071 61.2384475 1.787024172 0.030734 21 64 SH17644 17644 YJR145C_10_702761_701720_INTRON_15_270 intron 28.380975 134.276364 28.380975 106.895389 67.638182 1.830191926 0.030727 94 96 SH7911 7911 snoRNA cluster1 intergenic 23.93336 107.995127 23.93336 85.061767 54.4975635 1.736377086 0.030717 146 50 SH12727 12727 MT COX1 Exon1 26.431153 126.308885 26.431153 100.877732 63.6544425 1.803828719 0.030715 45 36 SH3445 3445 Trp1 tRNA 56 73 29.348642 108.819711 69.0841765 1.839378585 0.030691 130 62 SH18694 18694 YNL112W_14_413636_416278_INTRON_1274_2275 3' exon 24.669619 114.018457 24.669619 90.348838 57.5092285 1.759737541 0.03069 167 25 SH3317 3317 Thr3 5' flank 24.228869 87.197769 55.713319 1.745959031 0.030689 207 71 SH10250 10250 RUF6 3' 24.61274 89.941744 57.277242 1.757982098 0.030681 4 73 SH21714 21714 copy of SH11499 39.74864 123.742342 81.745491 1.912463807 0.030673 210 54 SH14585 14585 MT 21S rRNA intronic 61.336182 214.302698 61.336182 153.966516 107.651349 2.032019476 0.030651 171 42 SH1530 1530 Leu3 3' flank 22.751818 76.954256 49.853037 1.69769162 0.030643 37 80 SH2948 2948 Ser1 5' flank 25.45565 96.08301 60.76933 1.783684448 0.030638 39 34 SH1750 1750 Leu7 tRNA 46 58 89.155406 193.359073 141.2572395 2.150010715 0.030629 144 64 SH2454 2454 Phe5 tRNA-intron/exon 41 57 26.783854 102.589544 64.686699 1.810814989 0.030622 91 42 SH9167 9167 snR7 U5 RNA U5 106 118 29.792058 109.696128 69.744093 1.843507431 0.030597 57 37 SH14334 14334 MT VAR1 includes 5’ processing site VAR1 23.409145 103.765693 23.409145 81.356548 52.3828465 1.719189094 0.030556 149 19 SH8154 8154 snoRNA cluster 3; intergenic/snR70 22.464368 96.578228 22.464368 75.11386 48.789114 1.688322931 0.030551 180 21 SH21868 21868 copy of SH19503 22.933444 78.140293 50.5368685 1.703608328 0.030545 62 58 SH10042 10042 RUF6 RUF6 56 72 26.187244 99.719521 62.9533825 1.79901907 0.030499 60 42 SH20655 20655 YIL018W spliced 42.459633 127.605038 85.0323355 1.929584108 0.030492 208 75 SH21055 21055 YMR143W spliced 26.075405 99.182154 62.6287795 1.796773948 0.030491 20 45 SH19623 19623 RNA14 1.1 23.424735 81.472815 52.448775 1.719735349 0.030475 171 53 SH1269 1269 Ile2 tRNA-intron 41 57 24.590054 89.79858 57.194317 1.757352878 0.030472 15 103 SH10174 10174 RUF6 RUF6 716 728 33.664689 115.185956 74.4253225 1.871720725 0.030451 54 68 SH7253 7253 snR65 snR65 41 59 27.256199 104.637783 65.946991 1.819194985 0.030443 55 16 SH6392 6392 snR43 201-209 + 3' 201 22.840851 77.546556 50.1937035 1.700649241 0.030442 194 19 SH19812 19812 Negative Control 28.040902 106.229134 67.135018 1.82694911 0.030433 54 19 SH13763 13763 MT COB intronic 24.855386 115.567305 24.855386 91.711919 58.2836525 1.76554676 0.030427 126 28 SH10463 10463 RUF8 RUF8 241 258 28.748543 107.646231 68.197387 1.833767735 0.030427 185 8 SH17142 17142 YHR010W_8_126513_127484_INTRON_32_592 intron 32.957194 146.146712 32.957194 114.189518 73.573356 1.866720567 0.030416 56 56 SH2255 2255 Phe1 3' flank 26.716515 102.280531 64.498523 1.80954977 0.030412 48 51 SH13721 13721 MT COB 5' 22.701651 98.350809 22.701651 76.649158 49.6754045 1.696141412 0.030399 32 57 SH12951 12951 MT COX1 COX1ai2 26.9257 129.224897 26.9257 103.299197 65.1124485 1.813664027 0.030345 149 16 SH15797 15797 YDL061C_4_341182_340627_INTRON_1_408 intron 57.774656 205.788886 57.774656 149.01423 103.394443 2.014497198 0.030337 176 35 SH9405 9405 RUF1 3' 25.32484 95.147513 60.2361765 1.779857397 0.030331 84 68 SH16748 16748 YGL076C_7_365994_364333_INTRON_565_1032 intron 26.822449 128.624785 26.822449 102.802336 64.8123925 1.811658053 0.030301 203 32 SH10079 10079 RUF6 RUF6 241 257 26.519928 101.340942 63.930435 1.80570766 0.030277 28 36 SH21091 21091 YNL012W spliced 31.4403 112.092906 71.766603 1.85592239 0.030244 124 89 SH19122 19122 YPL031C_16_493033_492014_INTRON_18_119 3' exon 26.74132 128.157515 26.74132 102.416195 64.5787575 1.810089685 0.030218 20 59 SH15037 15037 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.060701 109.085764 24.060701 86.025063 55.042882 1.740701165 0.030192 18 44 SH9993 9993 RUF5-1 771-775 + 3' 771 31.954295 112.818943 72.386619 1.859658292 0.03014 207 43 SH12973 12973 MT COX1 COX1ai2 24.557778 113.156843 24.557778 89.599065 57.0784215 1.756471954 0.03013 145 88 SH5131 5131 snR11 256-258 + 3' 256 22.384761 74.638213 48.511487 1.685844587 0.030122 119 31 SH2907 2907 Pro8 tRNA 56 71 668.190411 976.80132 822.4958655 2.915133724 0.030119 12 54 SH9295 9295 RUF1 RUF1 51 68 25.097443 93.501611 59.299527 1.773051229 0.030107 185 55 SH4725 4725 snR4 snR4 161 180 23.842782 84.467094 54.154938 1.733638063 0.030107 194 95 SH17116 17116 YHR010W_8_126513_127484_INTRON_32_592 exon/intron 27.465213 131.547699 27.465213 105.082486 66.2738495 1.821342197 0.030104 190 31 SH15793 15793 YDL061C_4_341182_340627_INTRON_1_408 5' exon 24.388549 111.784756 24.388549 88.396207 56.392378 1.751220409 0.030093 195 28 SH14739 14739 MT tRNA cys; tRNA his 3' 24.170203 109.996813 24.170203 86.82661 55.4984065 1.744280514 0.030089 4 62 SH11336 11336 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3566 3579 28.500666 107.172575 67.8366205 1.831464204 0.030062 209 48 SH18499 18499 YMR194W_13_651144_651909_INTRON_17_479 intron 24.257217 110.720284 24.257217 87.463067 55.860142 1.747102035 0.030042 90 82 SH4772 4772 snR5 snR5 31 47 79.093566 179.098357 129.0959615 2.110912656 0.03002 94 61 SH7018 7018 snR60 3' 29.420034 109.001174 69.210604 1.840172639 0.029985 150 70 SH8034 8034 snoRNA cluster 2 snR55 47.681906 181.653191 47.681906 134.971285 91.3265955 1.960597268 0.029983 96 78 SH21908 21908 copy of SH19403 28.478015 107.13205 67.8050325 1.831261928 0.029979 148 43 SH17960 17960 YLR185W_12_522665_523290_INTRON_8_366 intron 24.855903 115.614441 24.855903 91.758538 58.3072205 1.765722339 0.029972 97 26 SH2256 2256 Phe1 3' flank 26.257438 100.103675 63.1805565 1.800583447 0.02991 143 19 SH13714 13714 MT tRNAGlu (and 5' processing site for COB) 3' 24.91619 116.117782 24.91619 92.201592 58.558891 1.767592843 0.029905 153 59 SH1410 1410 Leu1 3' flank 22.906222 78.013688 50.459955 1.702946859 0.029903 93 94 SH4775 4775 snR5 snR5 46 60 35.261095 117.438448 76.3497715 1.882807742 0.029895 59 43 SH5608 5608 snR34 5' 40.788872 125.266196 83.027534 1.919222139 0.029894 154 32 SH18293 18293 YML073C_13_124172_123227_INTRON_16_430 intron 58.167874 206.759691 58.167874 149.591817 103.8798455 2.016531295 0.029851 26 19 SH4808 4808 snR5 3' 23.707548 83.525346 53.616447 1.729298031 0.029849 53 15 SH17509 17509 YJL136C_10_156971_156248_INTRON_25_484 intron 24.897843 115.972556 24.897843 92.074713 58.486278 1.767053984 0.02984 126 40 SH19188 19188 YPL079W_16_406631_407534_INTRON_12_432 intron 24.688462 114.251524 24.688462 90.563062 57.625762 1.760616681 0.02984 74 9 SH1159 1159 His1 tRNA 16 32 48.274223 135.801285 92.037754 1.963966012 0.029836 19 54 SH14889 14889 MT tRNA Ala 3' 24.403737 111.932538 24.403737 88.528801 56.466269 1.751789093 0.029821 141 32 SH1445 1445 Leu2 5' flank - tRNA12 12 326.408747 523.389167 424.898957 2.628285665 0.029805 175 34 SH15445 15445 YBL087C_2_60732_59815_INTRON_43_546 intron 23.107923 101.447964 23.107923 79.340041 51.223982 1.709473336 0.0298 56 85 SH15178 15178 MT COX3 5' / cox3 25.161315 118.161077 25.161315 93.999762 59.5805385 1.775104424 0.029784 80 34 SH1361 1361 Ile3 3' flank 23.867006 84.67002 54.268513 1.734547922 0.029773 153 31 SH17162 17162 YHR016C_8_138446_136872_INTRON_48_215 intron 27.458311 131.546157 27.458311 105.087846 66.2730785 1.821337145 0.029756 24 95 SH12532 12532 MT_ORF6 + ORF7 (hypothetical) ORF6/7 24.496078 112.69135 24.496078 89.195272 56.845675 1.754697428 0.029727 133 53 SH6817 6817 snR52 5' - 10 -9 10 25.753449 97.69773 61.7255895 1.790465246 0.029697 135 10 SH21451 21451 copy of SH294 24.087489 86.264523 55.176006 1.74175026 0.029682 2 30 SH107 107 Arg1 5' flank 23.59643 82.751544 53.173987 1.725699225 0.029681 135 52 SH8911 8911 LSR1 / U2 RNA 3' 28.151643 106.496501 67.324072 1.828170376 0.029644 143 90 SH15562 15562 YBR084C-A_2_415219_414144_INTRON_3_508 5' exon 23.695684 106.157044 23.695684 83.46136 53.578522 1.728990729 0.029616 92 36 SH15862 15862 YDL079C_4_314747_312950_INTRON_413_704 intron 30.451311 140.172436 30.451311 110.721125 70.586218 1.848719913 0.029597 194 41 SH20620 20620 YHR097C spliced 24.124171 86.537702 55.3309365 1.742968021 0.029596 39 47 SH11681 11681 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5291 5306 211.42295 364.166923 287.7949365 2.459083149 0.02958 107 14 SH15894 15894 YDL082W_4_308423_309387_INTRON_5_369 3' exon 26.855958 128.882172 26.855958 103.026214 64.941086 1.812519547 0.02954 77 34 SH21460 21460 copy of SH730 159.58237 292.342948 225.962659 2.354036677 0.029524 51 5 SH3640 3640 Val2 5' flank 25.527818 96.630484 61.079151 1.785892992 0.029521 200 14 SH4828 4828 snR8 5' 28.231049 106.663654 67.4473515 1.828964901 0.029511 155 35 SH8823 8823 LSR1 / U2 RNA U2 756 777 22.880406 77.879264 50.379835 1.702256741 0.029476 138 31 SH7161 7161 snR63 3' 24.762033 91.127108 57.9445705 1.763012748 0.029473 131 56 SH12063 12063 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7201 7219 25.162919 94.045752 59.6043355 1.775277851 0.029429 90 29 SH2148 2148 Met1 3' flank 24.82083 91.555936 58.188383 1.764836289 0.029428 88 23 SH17946 17946 YLR128W_12_398531_399434_INTRON_4_97 intron 28.188225 133.772649 28.188225 106.584424 67.3863245 1.828571769 0.02939 59 60 SH8850 8850 LSR1 / U2 RNA U2 891 908 44.387796 130.360308 87.374052 1.941382477 0.029389 74 40 SH18449 18449 YMR142C_13_551206_550205_INTRON_5_406 3' exon 29.449255 137.543584 29.449255 109.094329 69.271792 1.840556423 0.02937 10 89 SH17039 17039 YGR183C_7_859471_859058_INTRON_4_216 intron 31.200642 142.005018 31.200642 111.804376 71.502509 1.854321281 0.029323 76 77 SH764 764 Gln4 3' flank 24.114663 86.493951 55.304307 1.742758955 0.029319 181 81 SH20304 20304 YER003C spliced 37.844157 121.110434 79.4772955 1.90024308 0.029315 82 8 SH12542 12542 MT_ORF6 + ORF7 (hypothetical) ORF6/7 23.695366 106.181404 23.695366 83.486038 53.590702 1.729089446 0.029307 206 30 SH12756 12756 MT COX1 COX1ai1 23.805168 107.073997 23.805168 84.268829 54.0369985 1.732691218 0.029307 69 67 SH3521 3521 Tyr1 3' flank 27.540347 105.279842 66.4100945 1.822234098 0.029305 62 7 SH6104 6104 snR37 3' 25.145589 93.9338 59.5396945 1.774806602 0.029273 57 67 SH4410 4410 telomerase RNA telomerase 1086 1105 23.050249 79.007838 51.0290435 1.707817428 0.029225 139 27 SH5270 5270 snR30 snR30 201 217 26.299057 100.359871 63.329464 1.801605812 0.029204 142 40 SH128 128 Arg1 16-28 16 28 59.548912 151.562336 105.555624 2.023481377 0.029158 87 67 SH1266 1266 Ile2 tRNA exon/intron 26 42 25.336179 95.34821 60.3421945 1.7806211 0.029133 147 65 SH12078 12078 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7276 7296 28.976327 108.173425 68.574876 1.836165031 0.029127 5 61 SH11965 11965 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6711 6728 92.953422 198.934754 145.944088 2.164186507 0.029113 115 89 SH5111 5111 snR11 snR11 156 178 25.93027 98.592291 62.2612805 1.794218048 0.029102 153 32 SH4788 4788 snR5 snR5 111 132 23.201928 80.033557 51.6177425 1.712799007 0.029071 65 70 SH14329 14329 MT VAR1 includes 5’ processing site VAR1 23.412401 103.921408 23.412401 81.509007 52.460704 1.719834114 0.029035 73 14 SH2356 2356 Phe3 3' flank 23.291514 80.663692 51.977603 1.715816248 0.029011 186 11 SH21222 21222 YOR182C spliced 26.167584 99.743137 62.9553605 1.799032715 0.028987 160 93 SH17906 17906 YLR061W_12_263195_263949_INTRON_13_401 intron 28.934803 136.034188 28.934803 108.099385 68.517094 1.835798935 0.028981 100 24 SH20119 20119 YDL075W spliced 29.600154 109.413913 69.5070335 1.842028754 0.028978 169 35 SH16274 16274 YDR447C_4_1355542_1354818_INTRON_4_317 intron 56.271716 202.316861 56.271716 147.045145 101.6584305 2.0071434 0.028963 204 80 SH7268 7268 snR65 3' 24.056741 86.110279 55.08351 1.741021606 0.028928 35 74 SH4204 4204 telomerase RNA telomerase 56 77 23.392668 81.379809 52.3862385 1.719217216 0.028924 56 76 SH5819 5819 snR35 snR35 281 295 57.441231 148.670015 103.055623 2.013071693 0.028889 30 58 SH2154 2154 Met2 5' flank 33.042872 114.392126 73.717499 1.867570593 0.028882 139 82 SH9544 9544 RUF3 RUF3 106 122 36.511231 119.197797 77.854514 1.891283798 0.02885 36 50 SH14062 14062 MT COB Cytbi4 24.28772 111.082999 24.28772 87.795279 56.0414995 1.748509747 0.028826 66 11 SH3634 3634 Val2 5' flank 23.981241 85.575648 54.7784445 1.738609696 0.028816 139 94 SH15339 15339 YAL030W_1_87288_87754_INTRON_103_215 intron 24.547006 113.189994 24.547006 89.642988 57.094997 1.756598054 0.028815 150 9 SH1666 1666 Leu5 3' flank 25.097627 93.628145 59.362886 1.773515007 0.028802 170 81 SH8890 8890 LSR1 / U2 RNA U2 1091 1103 26.512344 101.421922 63.967133 1.805956886 0.028799 203 87 SH14860 14860 MT tRNA Ser2; tRNA Arg2 tRNA Ser 24.583998 113.495611 24.583998 89.911613 57.2478055 1.757758843 0.028775 140 87 SH21619 21619 copy of SH7514 53.383573 143.014392 98.1989825 1.992106988 0.028766 71 54 SH4987 4987 snR10 5' 23.344961 81.060885 52.202923 1.717694821 0.028738 59 100 SH8258 8258 snoRNA cluster4 5' 24.092243 109.480225 24.092243 86.387982 55.2401125 1.742254554 0.028696 115 40 SH19842 19842 Negative Control 27.872916 105.988173 66.9305445 1.825624358 0.028693 168 83 SH17518 17518 YJL136C_10_156971_156248_INTRON_25_484 intron 26.536665 127.086017 26.536665 101.549352 64.0430085 1.806471725 0.028675 201 59 SH11178 11178 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2776 2789 109.3518 222.428783 165.8902915 2.21982097 0.028671 189 10 SH16468 16468 YER102W_5_362729_363698_INTRON_1_360 5' exon 24.184873 110.247052 24.184873 87.062179 55.623526 1.745258516 0.02867 199 77 SH7291 7291 snR66 5' 23.503709 82.183792 52.8437505 1.722993633 0.028664 41 60 SH9734 9734 RUF4 RUF4 446 462 25.477316 96.444195 60.9607555 1.785050341 0.028607 133 50 SH15203 15203 MT COX3 cox3 29.75421 138.492673 29.75421 109.738463 69.7463365 1.843521401 0.028597 65 82 SH20517 20517 YGR034W spliced 25.889907 98.440149 62.165028 1.793546134 0.028561 20 44 SH378 378 Asn1 5' flank 23.46893 81.950806 52.709868 1.721891929 0.028521 48 63 SH7384 7384 snR68 3' 26.279428 100.319312 63.29937 1.801399388 0.028516 3 99 SH11779 11779 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5781 5799 64.010479 157.869706 110.9400925 2.045088524 0.028509 116 77 SH5916 5916 snR36 snR36 36 55 24.373583 88.433771 56.403677 1.751307417 0.028506 37 53 SH10731 10731 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 541 554 26.616316 101.948453 64.2823845 1.808091978 0.028504 177 39 SH6932 6932 snR58 snR58 21 38 27.487556 105.217545 66.3525505 1.821857621 0.028498 129 86 SH5716 5716 snR34 snR34 501 518 58.342968 149.941046 104.142007 2.017625943 0.028473 75 94 SH876 876 Glu2 3' flank 26.387582 100.845075 63.6163285 1.803568601 0.02847 21 82 SH6200 6200 snR40 snR40 61 78 41.014459 125.681942 83.3482005 1.920896228 0.02846 197 14 SH20673 20673 YIL106W spliced 24.004142 85.773713 54.8889275 1.739484745 0.028448 209 89 SH10898 10898 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1376 1389 72.163316 169.39543 120.779373 2.081992771 0.028442 16 26 SH13602 13602 MT ATP8/AAP1 ATP8 22.492231 96.945161 22.492231 75.45293 48.9725805 1.689952989 0.028435 144 83 SH5297 5297 snR30 snR30 336 353 24.790035 91.427006 58.1085205 1.764239818 0.02843 205 22 SH17416 17416 YIL106W_9_166412_167441_INTRON_21_105 3' exon 24.630675 113.910153 24.630675 90.279478 57.4550765 1.759328407 0.02842 41 97 SH139 139 Arg1 71-73 + 3' flank 71 3' flank 25.052875 93.342245 59.19756 1.772303806 0.028373 175 35 SH20295 20295 YDR500C spliced 25.235685 94.685853 59.960769 1.777867194 0.028334 193 34 SH708 708 Gln3 71-72 + 3' flank 71 3' flank 24.288917 87.849156 56.0690365 1.748723093 0.028322 68 10 SH986 986 Gly2 5' flank 23.544877 82.50517 53.0250235 1.72448087 0.02831 110 92 SH1538 1538 Leu3 3' flank 28.167732 106.604436 67.386084 1.828570219 0.028308 11 14 SH10457 10457 RUF8 RUF8 211 230 24.347127 88.26482 56.3059735 1.750554472 0.028295 43 20 SH9891 9891 RUF5-1 RUF5-1 261 280 22.729543 76.992704 49.8611235 1.69776206 0.028293 137 94 SH17808 17808 YKR057W_11_551293_551878_INTRON_25_346 5' exon 69.778415 234.801896 69.778415 166.023481 117.900948 2.071517297 0.028291 47 100 SH1364 1364 Ile3 3' flank 21.686727 70.430296 46.0585115 1.663309899 0.028283 155 83 SH6635 6635 snR48 snR48 1 20 95.407616 202.571389 148.9895025 2.17315567 0.028279 165 71 SH12649 12649 MT_15S MT_15S 34.404728 149.751316 34.404728 116.346588 75.375658 1.877231116 0.028277 184 68 SH16219 16219 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 25.778496 122.705412 25.778496 97.926916 61.852706 1.791358704 0.028276 92 24 SH25 25 Ala1 tRNA 21 33 26.585737 101.820709 64.203223 1.80755683 0.02825 103 68 SH1321 1321 Ile3 5' flank - tRNA2 2 26.369168 100.774735 63.5719515 1.803265543 0.028235 107 25 SH8410 8410 snoRNA cluster 5 snR190 22.99792 100.742265 22.99792 78.744345 50.8711325 1.706471406 0.028231 145 69 SH7429 7429 snR69 snR69 46 63 22.507304 75.565941 49.0366225 1.69052055 0.02822 47 17 SH2794 2794 Pro6 tRNA-intron/exon 61 75 1233.549767 1686.997884 1460.273826 3.164434301 0.028218 126 9 SH8105 8105 snoRNA cluster 3; 5' 28.888562 135.940515 28.888562 108.051953 68.4702575 1.835501961 0.028206 71 34 SH11196 11196 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2866 2888 25.042352 93.28888 59.165616 1.772069391 0.028128 122 77 SH18009 18009 YLR287C-A_12_713158_712537_INTRON_4_433 intron 29.605955 138.081385 29.605955 109.47543 69.5406925 1.842239011 0.028115 161 62 SH9312 9312 RUF1 RUF1 136 153 26.613334 101.965461 64.2893975 1.808139356 0.028111 101 74 SH11703 11703 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5401 5414 37.440868 120.600034 79.020451 1.897739504 0.028088 63 11 SH5260 5260 snR30 snR30 151 163 28.88771 108.057381 68.4725455 1.835516473 0.028082 110 3 SH12905 12905 MT COX1 COX1ai2 24.162306 110.117844 24.162306 86.955538 55.558922 1.744753811 0.02804 119 37 SH3759 3759 Val4 tRNA 21 33 25.97669 98.901198 62.438944 1.795455549 0.027996 26 64 SH11151 11151 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2641 2659 25529.03527 24308.41412 24918.72469 4.396525812 0.027984 39 79 SH13864 13864 MT COB intronic 23.015601 100.900183 23.015601 78.884582 50.9500915 1.707144968 0.027923 214 53 SH5461 5461 snR32 5' 23.872089 84.871033 54.371561 1.735371802 0.027917 189 20 SH18716 18716 YNL130C_14_381156_379555_INTRON_30_470 intron 23.578669 105.358753 23.578669 82.780084 53.1793765 1.725743241 0.027898 29 76 SH12272 12272 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.486724 121.044334 25.486724 96.55761 61.022167 1.785487626 0.027887 118 4 SH16530 16530 YER131W_5_423587_424307_INTRON_1_361 intron 25.10391 117.866189 25.10391 93.762279 59.4330945 1.774028343 0.027885 104 59 SH15212 15212 MT COX3 cox3 25.294978 119.465016 25.294978 95.170038 60.232508 1.779830947 0.027846 103 28 SH4669 4669 snR3 3' 23.393946 81.480878 52.437412 1.719641249 0.027843 175 81 SH3935 3935 RNase MRP RNaseMRP 91 106 27.939582 106.1711 67.055341 1.826433375 0.027837 117 33 SH18236 18236 YML026C_13_223828_222987_INTRON_48_448 intron 26.260427 125.541698 26.260427 100.281271 63.270849 1.801203662 0.027834 69 91 SH3150 3150 Ser4 3' flank 26.319584 100.567 63.443292 1.80238571 0.027833 13 82 SH8142 8142 snoRNA cluster 3; intergenic 2687.067195 6052.660326 2687.067195 3366.593131 3026.830163 3.480988053 0.02781 66 58 SH10032 10032 RUF6 RUF6 6 23 24.651565 90.487413 57.569489 1.760192375 0.027797 138 6 SH14829 14829 "MT tRNAs (Lys, Arg1, Gly)" 3' 23.539163 105.049633 23.539163 82.51047 53.0248165 1.724479174 0.027781 72 72 SH1853 1853 Leu9 tRNA 6 18 5292.908784 6099.451061 5696.179923 3.755583699 0.027779 189 6 SH17584 17584 YJL191W_10_73786_74610_INTRON_11_418 intron 24.390598 112.011558 24.390598 88.62096 56.505779 1.752092867 0.027778 47 4 SH14018 14018 MT COB Exon4 23.399726 103.931082 23.399726 81.531356 52.465541 1.719874155 0.027728 129 35 SH17939 17939 YLR093C_12_327416_326514_INTRON_17_157 intron/exon 23.166621 102.066937 23.166621 79.900316 51.5334685 1.712089374 0.027726 31 8 SH9539 9539 RUF3 RUF3 81 97 24.493366 89.359369 56.9263675 1.755313472 0.027724 42 37 SH4626 4626 snR3 snR3 46 63 25.172794 94.287664 59.730229 1.77619418 0.027674 108 61 SH8864 8864 LSR1 / U2 RNA U2 961 976 25.004764 93.058566 59.031665 1.771085033 0.027668 119 15 SH13834 13834 MT COB Cytbi2 26.602585 127.552209 26.602585 101.949624 64.2761045 1.808049548 0.027658 106 21 SH4701 4701 snR4 snR4 41 62 24.994556 92.985425 58.9899905 1.770778326 0.027654 173 40 SH10891 10891 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1341 1358 41830.60849 37545.45525 39688.03187 4.598659563 0.027633 36 16 SH7522 7522 snR79 5' 24.110375 86.618221 55.364298 1.743229798 0.027604 87 103 SH6087 6087 snR37 snR37 351 367 30.594861 111.034903 70.814882 1.850124536 0.027586 63 60 SH12923 12923 MT COX1 COX1ai2 26.051514 124.346464 26.051514 99.29495 62.673232 1.797082091 0.027566 83 11 SH16951 16951 YGR027C_7_534779_534126_INTRON_1_312 3' exon 31.883351 143.745757 31.883351 112.862406 72.3728785 1.859575846 0.027528 18 2 SH6883 6883 snR56 snR56 46 63 25.364954 95.718522 60.541738 1.782054884 0.027523 87 102 SH9353 9353 RUF1 RUF1 341 362 24.297719 87.988946 56.1433325 1.749298187 0.027465 107 50 SH14475 14475 MT 21S rRNA 21S rRNA3 23.877391 107.827953 23.877391 84.950562 54.4139765 1.735710465 0.02745 34 32 SH8752 8752 LSR1 / U2 RNA U2 401 413 31.380436 112.162814 71.771625 1.855952779 0.027397 179 2 SH21339 21339 YPR098C spliced 23.916589 85.23796 54.5772745 1.737011844 0.027387 24 61 SH5925 5925 snR36 snR36 81 102 36.36964 119.092585 77.7311125 1.890594883 0.027382 73 35 SH21235 21235 YOR293W spliced 35.194275 117.492754 76.3435145 1.882772149 0.027353 146 56 SH6813 6813 snR52 5' 24.821539 91.756465 58.289002 1.76558662 0.02735 111 18 SH1 1 Ala1 5' flank 27.026065 104.034381 65.530223 1.816441646 0.0273 71 59 SH18138 18138 YLR406C_12_931752_931062_INTRON_58_406 intron 24.847231 115.798268 24.847231 91.951037 58.399134 1.766406407 0.027262 53 19 SH64 64 Ala2 5' flank 24.89246 92.279955 58.5862075 1.767795385 0.027257 32 31 SH8121 8121 snoRNA cluster 3; snR41 24.979385 116.892656 24.979385 92.913271 58.946328 1.770456756 0.02725 2 45 SH7623 7623 snR189 186-189 + 3' 186 24.312194 88.111471 56.2118325 1.749827743 0.027246 67 58 SH21760 21760 copy of SH13392 26.635172 102.14249 64.388831 1.80881054 0.027221 108 68 SH14203 14203 MT COB 3' 22.477541 96.928767 22.477541 75.451226 48.9643835 1.689880291 0.027219 34 33 SH1099 1099 Gly4 5' flank 25.026288 93.259754 59.143021 1.771903504 0.027206 99 60 SH17778 17778 YKL180W_11_109271_110131_INTRON_310_615 intron 23.164561 102.095015 23.164561 79.930454 51.5475075 1.71220767 0.027194 163 86 SH12880 12880 MT COX1 COX1ai1 24.631505 114.032109 24.631505 90.400604 57.5160545 1.759789087 0.027177 159 75 SH13117 13117 MT COX1 COX1ai3 24.649459 114.180774 24.649459 90.531315 57.590387 1.760349997 0.027161 5 40 SH17076 17076 YGR225W_7_945138_946919_INTRON_1184_1276 intron 23.896857 108.014276 23.896857 85.117419 54.507138 1.736453379 0.027147 31 14 SH14448 14448 MT 21S rRNA 21S rRNA3 23.919528 108.207891 23.919528 85.288363 54.6039455 1.737224025 0.027059 171 40 SH3885 3885 RNaseP 3' 22.809834 77.61124 50.210537 1.700794866 0.027041 10 2 SH9572 9572 RUF3 RUF3 246 262 47.501792 134.926705 91.2142485 1.960062684 0.027029 155 69 SH5865 5865 snR35 snR35 511 528 28.797613 107.938421 68.368017 1.834852983 0.027028 75 63 SH17249 17249 YHR097C_8_298611_297387_INTRON_126_249 intron 26.637813 127.808812 26.637813 102.170999 64.404406 1.808915579 0.027025 182 57 SH5132 5132 snR11 3' 22.457343 75.336726 48.8970345 1.689282521 0.027022 134 58 SH19307 19307 YPL198W_16_173151_174701_INTRON_12_420 intron 34.891874 150.992553 34.891874 117.100679 75.9962765 1.880792314 0.026916 179 94 SH1805 1805 Leu8 tRNA-intron/exon 51 70 24.485963 89.380646 56.9333045 1.755366392 0.026914 35 82 SH11164 11164 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2706 2728 23.523197 82.474114 52.9986555 1.724264852 0.026893 69 59 SH18571 18571 YNL012W_14_609682_611661_INTRON_106_189 intron/exon 24.721614 114.800599 24.721614 91.078985 57.9002995 1.76268081 0.026867 179 98 SH8863 8863 LSR1 / U2 RNA U2 956 973 24.563762 89.942858 57.25331 1.7578006 0.026863 7 42 SH13323 13323 MT COX1 COX1-ai5a 23.770188 107.006705 23.770188 84.236517 54.0033525 1.732420721 0.026836 104 76 SH5145 5145 snR11 3' 25.941864 98.824143 62.3830035 1.795066281 0.026829 180 61 SH9942 9942 RUF5-1 RUF5-1 516 532 34.326418 116.319835 75.3231265 1.876928338 0.026828 17 72 SH6411 6411 snR45 5' 24.957669 92.796494 58.8770815 1.769946274 0.026814 64 50 SH19950 19950 YBL050W spliced 50.410187 139.023582 94.7168845 1.976427404 0.026811 198 12 SH1288 1288 Ile2 3' flank 24.083282 86.494399 55.2888405 1.742637482 0.026802 163 47 SH1353 1353 Ile3 3' flank 24.307748 88.120868 56.214308 1.749846869 0.026793 82 25 SH12928 12928 MT COX1 COX1ai2 26.903176 129.383602 26.903176 103.480426 65.191801 1.814192979 0.026763 188 39 SH13367 13367 MT COX1 intronic 24.107132 109.778253 24.107132 86.671121 55.3891265 1.743424516 0.026761 121 67 SH21387 21387 Phe1_5 spliced 34.136175 116.058601 75.097388 1.875624832 0.026742 131 95 SH6979 6979 snR60 5' 29.474881 109.298219 69.38655 1.841275294 0.026723 99 39 SH540 540 Cys1 tRNA 1 13 156.774133 288.943721 222.858927 2.348030035 0.026707 138 104 SH19074 19074 YOR293W_15_867094_867848_INTRON_53_489 intron 92.287601 289.534502 92.287601 198.246901 145.267251 2.162167718 0.026704 61 101 SH11215 11215 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2961 2977 52.139222 141.451962 96.795592 1.98585558 0.026698 119 85 SH728 728 Gln4 5' flank 48.663414 136.559417 92.6114155 1.966664522 0.026683 162 59 SH21939 21939 copy of SH2 30.786275 111.358791 71.072533 1.851701794 0.026658 211 69 SH4303 4303 telomerase RNA telomerase 551 570 22.984866 78.78387 50.884368 1.706584385 0.026658 3 76 SH4988 4988 snR10 5' 23.377095 81.46446 52.4207775 1.719503458 0.026645 176 55 SH2764 2764 Pro6 5' flank 26.735659 102.676363 64.706011 1.810944627 0.026643 10 37 SH4352 4352 telomerase RNA telomerase 796 817 26.516552 101.615964 64.066258 1.806629358 0.026618 95 10 SH18986 18986 YOR096W_15_505793_506766_INTRON_145_545 intron 26.383287 126.355021 26.383287 100.971734 63.6775105 1.803986076 0.026608 74 4 SH4049 4049 SRP RNA SRP RNA 136 153 24.504179 89.539779 57.021979 1.756042286 0.026601 4 101 SH6596 6596 snR47 86-99 + 3' 86 24.449573 89.149318 56.7994455 1.754344096 0.026598 82 54 SH13967 13967 MT COB Cytbi3 23.974664 108.705738 23.974664 85.731074 54.852869 1.739199348 0.026553 168 104 SH19472 19472 ADH1 25.40825 96.138453 60.7733515 1.783713187 0.026515 68 50 SH14663 14663 MT 21S rRNA 21S rRNA4 28.274509 134.195457 28.274509 106.920948 67.5977285 1.829932103 0.026512 33 102 SH4565 4565 U3b (snR17b) U3b 381 395 28.46287 107.299514 67.881192 1.83174946 0.026503 9 66 SH13231 13231 MT COX1 COX1-ai4 32.302014 144.803945 32.302014 113.501931 72.9019725 1.862739279 0.0265 206 28 SH3439 3439 Trp1 tRNA 26 43 25.613161 97.271422 61.4422915 1.788467404 0.026471 59 41 SH3642 3642 Val2 5' flank 25.07032 93.652599 59.3614595 1.77350457 0.026468 73 64 SH13467 13467 MT COX1 intronic 22.43158 96.646441 22.43158 75.214861 48.8232205 1.688626423 0.026452 93 32 SH9477 9477 RUF2 RUF2 226 241 31.939655 112.999989 72.469822 1.860157195 0.02645 69 102 SH18066 18066 YLR344W_12_819312_820142_INTRON_20_466 intron 33.993404 148.868399 33.993404 115.874995 74.9341995 1.874680072 0.026448 29 98 SH236 236 Arg3 36-48 36 48 41.015214 125.812427 83.4138205 1.921238013 0.026438 189 51 SH19975 19975 YBL087C spliced 23.64699 83.393946 53.520468 1.728519902 0.026419 41 90 SH16750 16750 YGL076C_7_365994_364333_INTRON_565_1032 intron 23.599053 105.656445 23.599053 83.057392 53.3282225 1.726957108 0.026369 31 15 SH17225 17225 YHR041C_8_189855_189122_INTRON_15_115 3' exon 27.814098 132.814945 27.814098 106.000847 66.9074725 1.825474624 0.026352 38 35 SH13861 13861 MT COB Cytbi2 25.115622 118.111962 25.115622 93.99634 59.555981 1.774925383 0.026346 8 68 SH13245 13245 MT COX1 COX1-ai4 24.335151 111.694831 24.335151 88.35968 56.3474155 1.750874001 0.026308 197 39 SH14024 14024 MT COB Exon4 26.492892 127.019424 26.492892 101.526532 64.009712 1.806245873 0.026302 22 90 SH12504 12504 MT_tRNA Pro 3' 22.473865 96.974746 22.473865 75.500881 48.987373 1.690084151 0.026258 81 23 SH6514 6514 snR46 snR46 61 77 27.935086 106.251767 67.0934265 1.826679972 0.026245 146 59 SH8710 8710 LSR1 / U2 RNA U2 191 210 22.890471 78.19947 50.5449705 1.703677947 0.026242 167 46 SH8126 8126 snoRNA cluster 3; snR41 26.480095 126.953428 26.480095 101.473333 63.976714 1.80602193 0.026192 190 16 SH3696 3696 Val3 5' flank 23.735311 84.044366 53.8898385 1.731506882 0.026186 88 53 SH21369 21369 Leu1_5 spliced 53.275366 143.060339 98.1678525 1.991969291 0.026171 171 50 SH18196 18196 YML024W_13_225889_226697_INTRON_4_401 intron 28.732269 135.589564 28.732269 107.857295 68.294782 1.834387523 0.02617 53 14 SH12507 12507 MT_ORF6 + ORF7 (hypothetical) 5' 22.827713 99.627575 22.827713 77.799862 50.3137875 1.701687011 0.02612 82 29 SH17400 17400 YIL069C_9_232366_231550_INTRON_4_412 intron 27.937333 133.203082 27.937333 106.265749 67.101541 1.826732494 0.026078 178 40 SH6294 6294 snR42 snR42 251 268 25.418853 96.260893 60.839873 1.784188299 0.026071 86 42 SH7808 7808 snoRNA cluster1 intergenic 23.6937 106.452165 23.6937 83.758465 53.7260825 1.730185175 0.026057 165 9 SH188 188 Arg2 56-68 56 68 43.316165 129.096439 86.206302 1.935539016 0.02604 175 18 SH7573 7573 snR189 5' 24.339949 88.418261 56.379105 1.751118177 0.026038 17 35 SH9341 9341 RUF1 RUF1 281 298 24.817152 91.850631 58.3338915 1.76592095 0.026013 85 28 SH17168 17168 YHR016C_8_138446_136872_INTRON_48_215 intron 26.165533 125.13187 26.165533 99.966337 63.065935 1.799794839 0.026012 99 34 SH8298 8298 snoRNA cluster4 intergenic 23.836492 107.621826 23.836492 84.785334 54.310913 1.734887104 0.026003 30 10 SH19204 19204 YPL081W_16_404945_406039_INTRON_8_508 intron 36.730025 155.418509 36.730025 119.688484 78.2092545 1.893258146 0.025956 64 46 SH8925 8925 snR17a / U3a 5' 25.079471 93.769629 59.42455 1.773965902 0.025948 90 83 SH7697 7697 snoRNA cluster1 intergenic 22.369641 96.226385 22.369641 74.856744 48.6131925 1.686754143 0.025945 162 19 SH18246 18246 YML034W_13_209525_212155_INTRON_1921_2046 5' exon 32.019841 144.160414 32.019841 113.140573 72.580207 1.860818202 0.025927 33 72 SH21445 21445 copy of SH42 25.575104 97.130535 61.3528195 1.787834526 0.025924 67 23 SH20219 20219 YDR092W spliced 41.943266 127.171868 84.557567 1.927152478 0.025912 66 4 SH9461 9461 RUF2 RUF2 146 162 26.977042 103.910353 65.4436975 1.815867829 0.025895 128 55 SH5647 5647 snR34 snR34 156 175 22.492335 75.648758 49.0705465 1.690820895 0.025874 96 2 SH18755 18755 YNL162W_14_331319_332151_INTRON_5_516 intron 1090.722885 2602.87013 1090.722885 1513.147245 1301.935065 3.114589324 0.025862 74 20 SH7266 7266 snR65 3' 23.346266 81.314741 52.3305035 1.718754913 0.025857 207 45 SH2201 2201 Met2 3' flank 24.489034 89.49988 56.994457 1.75583262 0.025854 114 29 SH5057 5057 snR10 3' 24.612573 90.388332 57.5004525 1.759671262 0.02584 72 28 SH6079 6079 snR37 snR37 311 328 24.99741 93.180292 59.088851 1.771505545 0.025831 95 96 SH2443 2443 Phe5 5' flank - tRNA3 3 25.711243 97.793219 61.752231 1.790652653 0.02581 160 62 SH6740 6740 snR49 3' 22.537999 75.947957 49.242978 1.692344309 0.025804 32 63 SH6134 6134 snR39B snR39B 11 26 35.686597 118.257469 76.972033 1.886332957 0.025795 7 17 SH19944 19944 YBL040C spliced 23.384359 81.588816 52.4865875 1.720048337 0.025787 15 90 SH12654 12654 MT_15S MT_15S 29.352871 137.464698 29.352871 109.111827 69.232349 1.840309067 0.025785 151 68 SH7875 7875 snoRNA cluster1 snR73 22.676907 98.52412 22.676907 76.847213 49.76206 1.696898351 0.025776 116 81 SH15068 15068 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.481751 112.937007 24.481751 89.455256 56.9685035 1.755634811 0.025772 85 66 SH7128 7128 snR63 snR63 146 161 38.23372 121.891412 80.062566 1.903429505 0.025735 93 61 SH3335 3335 Thr3 tRNA 21 35 25.61786 97.350343 61.4841015 1.788762831 0.025733 193 90 SH15135 15135 MT tRNA Phe 3' 24.349233 111.864639 24.349233 88.515406 56.4323195 1.751527901 0.025697 121 103 SH9237 9237 snR6 / U6 RNA U6 56 70 30.380412 110.828618 70.604515 1.848832474 0.025685 120 46 SH755 755 Gln4 tRNA 46 58 39.998407 124.406604 82.2025055 1.914885055 0.025657 149 100 SH19325 19325 YPL218W_16_138697_139408_INTRON_29_167 intron 24.740104 115.067882 24.740104 91.327778 58.033941 1.763682064 0.025636 139 20 SH3638 3638 Val2 5' flank 24.855337 92.164914 58.5101255 1.76723103 0.025621 16 7 SH1131 1131 Gly4 3' flank 25.548195 97.025358 61.2867765 1.787366779 0.025609 34 63 SH14268 14268 MT VAR1 includes 5’ processing site VAR1 23.185748 102.398246 23.185748 80.212498 51.699123 1.713483176 0.025591 187 54 SH9050 9050 snR17a / U3a 3' 23.118398 79.746737 51.4325675 1.711238205 0.025591 11 13 SH984 984 Gly2 5' flank 25.353977 95.827942 60.5909595 1.78240783 0.025583 63 41 SH1857 1857 Leu9 tRNA-exon/intron 26 41 133.626136 256.926957 195.2765465 2.290650086 0.025567 73 98 SH2476 2476 Phe5 3' flank 24.162828 87.189035 55.6759315 1.745667492 0.025518 123 9 SH14644 14644 MT 21S rRNA intronic 24.850255 115.989278 24.850255 92.139023 58.494639 1.767116065 0.025504 73 79 SH17529 17529 YJL136C_10_156971_156248_INTRON_25_484 3' exon 26.168588 125.190713 26.168588 100.022125 63.0953565 1.799997399 0.025489 38 54 SH10396 10396 RUF8 5' 28.837216 108.106348 68.471782 1.835511631 0.025476 27 82 SH21416 21416 Ser4 spliced 29.722276 109.85892 69.790598 1.84379692 0.025454 154 79 SH4498 4498 U3b (snR17b) U3b 46 63 29.530253 109.481457 69.505855 1.84202139 0.025447 90 8 SH4571 4571 U3b (snR17b) U3b 411 427 164.97529 300.563363 232.7693265 2.36692575 0.025423 142 25 SH3486 3486 Tyr1 5' flank 23.357166 81.431316 52.394241 1.719283553 0.025389 117 42 SH3689 3689 Val3 5' flank 29.287202 109.005922 69.146562 1.839770592 0.025371 28 46 SH197 197 Arg2 3' flank 24.841204 92.087611 58.4644075 1.766891553 0.025352 48 76 SH6747 6747 snR50 5' 31.531397 112.48747 72.0094335 1.857389394 0.02534 79 40 SH7886 7886 snoRNA cluster1 snR73/intergenic 23.654064 106.193752 23.654064 83.539688 53.596876 1.729139477 0.025327 151 28 SH6448 6448 snR45 snR45 86 102 1643.515435 2185.292343 1914.403889 3.282033568 0.025322 98 7 SH2606 2606 Pro3 5' flank 30.973277 111.698028 71.3356525 1.853306638 0.025315 193 30 SH4401 4401 telomerase RNA telomerase 1041 1057 24.30832 88.259704 56.284012 1.750385047 0.025303 51 69 SH17379 17379 YIL052C_9_257061_256224_INTRON_38_509 intron 24.558277 113.606316 24.558277 90.048039 57.303158 1.758178557 0.025297 170 26 SH8263 8263 snoRNA cluster4 snR67 197.273766 541.850116 197.273766 345.57635 271.425058 2.433649939 0.025261 12 16 SH20362 20362 YER131W spliced 53.489225 143.423543 98.456384 1.993243881 0.025245 174 9 SH21265 21265 YPL081W spliced 27.084615 104.489396 65.7870055 1.818140119 0.025224 17 25 SH6792 6792 snR50 3' 22.415357 75.205569 48.810463 1.688512927 0.025204 134 27 SH14826 14826 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly / 3' 24.241471 111.033509 24.241471 87.792038 56.0167545 1.748317943 0.0252 7 26 SH5710 5710 snR34 snR34 471 490 23.938554 85.592895 54.7657245 1.738508837 0.025186 204 102 SH2224 2224 Phe1 5' flank - tRNA11 11 35.791549 118.438758 77.1151535 1.887139727 0.025138 176 102 SH8927 8927 snR17a / U3a 5' 24.338361 88.489328 56.4138445 1.751385697 0.025131 121 71 SH19284 19284 YPL143W_16_282121_282969_INTRON_20_544 intron/exon 22.255707 95.447265 22.255707 74.191558 48.2236325 1.683259921 0.025119 108 96 SH16371 16371 YER003C_5_159117_157735_INTRON_32_124 exon/intron 26.237355 125.621088 26.237355 100.383733 63.310544 1.801476045 0.025117 185 92 SH1873 1873 Leu9 3' flank 22.525211 75.920623 49.222917 1.692167347 0.025085 186 34 SH4801 4801 snR5 snR5 176 188 30.947983 111.675293 71.311638 1.853160412 0.025068 151 45 SH17599 17599 YJL205C-A_10_50443_50139_INTRON_33_175 5' exon 27.031815 130.280443 27.031815 104.248628 65.6402215 1.817170038 0.02502 25 22 SH8156 8156 snoRNA cluster 3; intergenic/snR70 22.765538 99.247447 22.765538 77.481909 50.1237235 1.700043326 0.025012 181 71 SH19210 19210 YPL081W_16_404945_406039_INTRON_8_508 intron 25.91203 123.736475 25.91203 98.824445 62.3682375 1.794963471 0.024971 85 68 SH7608 7608 snR189 snR189 111 128 24.989461 93.20829 59.0988755 1.771579217 0.024931 185 91 SH9837 9837 RUF5-1 5' - 13 -9 13 22.547206 76.074289 49.3107475 1.692941586 0.02493 165 58 SH16129 16129 YDR064W_4_579453_580447_INTRON_22_560 intron 24.493671 113.112969 24.493671 89.619298 57.0564845 1.756305009 0.024916 182 12 SH2439 2439 Phe5 5' flank 42.958027 128.670725 85.814376 1.933560049 0.02489 103 15 SH499 499 Asp2 tRNA 56 68 27.999634 106.461536 67.230585 1.82756689 0.024841 206 53 SH13282 13282 MT COX1 Exon 5a 24.104212 109.930201 24.104212 86.825989 55.4651005 1.744019804 0.02482 20 14 SH6143 6143 snR39B snR39B 56 75 27.599856 105.654791 66.6273235 1.823652367 0.024769 62 23 SH4088 4088 SRP RNA SRP RNA 331 343 30.755614 111.417032 71.086323 1.851786051 0.024762 34 31 SH10752 10752 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 646 664 50.420352 139.187361 94.8038565 1.976826004 0.024761 214 10 SH182 182 Arg2 26-40 26 40 34.173041 116.223629 75.198335 1.876208225 0.024748 23 11 SH17544 17544 YJL177W_10_90783_91654_INTRON_310_626 intron 23.243298 102.930824 23.243298 80.687526 51.965412 1.715714375 0.02473 148 94 SH12547 12547 MT_ORF6 + ORF7 (hypothetical) 3' 24.715563 114.953273 24.715563 91.23771 57.9766365 1.763253016 0.024702 121 77 SH17062 17062 YGR214W_7_920570_921783_INTRON_91_545 intron 30.334839 140.153583 30.334839 110.818744 70.5767915 1.848661911 0.024643 168 87 SH15323 15323 YAL003W_1_142172_143158_INTRON_81_446 intron 28.111913 133.812991 28.111913 106.701078 67.4064955 1.828701749 0.024615 116 62 SH13339 13339 MT COX1 COX1-ai5a 23.675858 106.433483 23.675858 83.757625 53.7167415 1.73010966 0.024613 62 6 SH12273 12273 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.14382 118.516458 25.14382 94.372638 59.758229 1.776397718 0.024596 166 46 SH20436 20436 YGL076C spliced 106.713554 219.213759 162.9636565 2.212090761 0.024591 196 11 SH3405 3405 Thr4 3' flank 24.152588 87.19927 55.675929 1.745667472 0.024588 206 23 SH18456 18456 YMR143W_13_551927_552902_INTRON_25_568 intron 32.741485 145.95662 32.741485 114.215135 73.47831 1.866159159 0.024586 212 80 SH5752 5752 snR35 5' 24.023272 86.260426 55.141849 1.741481325 0.024577 72 42 SH9561 9561 RUF3 RUF3 191 207 25.450799 96.637096 61.0439475 1.78564261 0.024566 57 6 SH21072 21072 YMR225C spliced 29.955321 110.274261 70.114791 1.845809644 0.024543 48 6 SH6477 6477 snR45 3' 23.162974 80.141397 51.6521855 1.713088702 0.024542 96 62 SH20170 20170 YDL137W spliced 133.779114 257.298548 195.538831 2.291233014 0.024535 148 96 SH19381 19381 YPR043W_16_654161_654842_INTRON_3_405 intron 32.907699 146.355274 32.907699 114.447575 73.677637 1.867335689 0.024519 15 38 SH21171 21171 YNL312W spliced 29.333388 109.147653 69.2405205 1.840360324 0.024501 149 95 SH14836 14836 MT tRNA Asp 5' 24.901073 116.505078 24.901073 92.604005 58.752539 1.769026639 0.024501 159 93 SH2146 2146 Met1 3' flank 31.249067 112.134286 71.6916765 1.855468736 0.024496 21 86 SH8494 8494 snR19 / U1 RNA 5' 24.511518 89.786312 57.148915 1.75700799 0.024493 128 10 SH4548 4548 U3b (snR17b) U3b 296 315 25.256251 95.211632 60.2339415 1.779841283 0.024493 69 49 SH15015 15015 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.414457 120.800167 25.414457 96.38571 60.9000835 1.784617888 0.024478 70 18 SH14654 14654 MT 21S rRNA 21S rRNA4 24.830621 115.924959 24.830621 92.094338 58.4624795 1.766877231 0.024467 61 96 SH2830 2830 Pro7 5' flank 24.621405 90.58092 57.6011625 1.760431248 0.024451 186 104 SH8888 8888 LSR1 / U2 RNA U2 1081 1095 28.169485 106.826903 67.498194 1.829292153 0.024443 137 2 SH16031 16031 YDL191W_4_117665_118518_INTRON_4_494 intron 26.959356 129.903557 26.959356 103.944201 65.4517785 1.815921452 0.024424 205 72 SH6840 6840 snR52 3' 24.385455 88.891233 56.638344 1.753110547 0.024407 122 29 SH7904 7904 snoRNA cluster1 intergenic 24.605201 114.075885 24.605201 90.470684 57.5379425 1.759954328 0.02438 151 23 SH12525 12525 MT_ORF6 + ORF7 (hypothetical) ORF6/7 22.569844 97.832632 22.569844 76.262788 49.416316 1.693870365 0.024378 53 98 SH17895 17895 YLR048W_12_242233_243350_INTRON_91_449 3' exon 28.066057 133.688039 28.066057 106.621982 67.3440195 1.828299034 0.024377 183 41 SH13717 13717 MT tRNAGlu (and 5' processing site for COB) 3' 23.740193 106.978789 23.740193 84.238596 53.9893945 1.732308457 0.024376 118 52 SH20346 20346 YER102W spliced 62.678021 156.372578 109.5252995 2.039514449 0.024363 92 66 SH5279 5279 snR30 snR30 246 262 25.456456 96.680685 61.0685705 1.785817754 0.024349 142 94 SH12275 12275 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.824268 150.978762 34.824268 117.154494 75.989381 1.880752907 0.024344 164 49 SH4693 4693 snR4 snR4 1 18 54.905167 145.491835 100.198501 2.000861224 0.024316 197 97 SH19517 19517 ACT1 23.134602 79.962803 51.5487025 1.712217738 0.02431 99 20 SH6593 6593 snR47 snR47 71 89 33.716295 115.606134 74.6612145 1.87309505 0.024301 82 45 SH20964 20964 YML026C spliced 23.518939 82.668979 53.093959 1.72504511 0.024288 30 17 SH17138 17138 YHR010W_8_126513_127484_INTRON_32_592 intron 29.566057 138.186478 29.566057 109.620421 69.593239 1.84256705 0.024271 66 43 SH1728 1728 Leu7 5' flank 26.988616 104.099563 65.5440895 1.816533535 0.024268 27 50 SH10532 10532 RUF8 RUF8 586 607 22.783619 77.65955 50.2215845 1.700890411 0.024246 32 46 SH1904 1904 Lys1 5' flank 32.516345 113.923036 73.2196905 1.864627889 0.024245 137 32 SH13657 13657 MT ATP6 ATP6 24.443674 112.770519 24.443674 89.326845 56.8852595 1.754999744 0.024198 124 69 SH19051 19051 YOR234C_15_779404_778554_INTRON_20_546 intron 26.168153 125.289812 26.168153 100.121659 63.144906 1.800338321 0.024194 48 7 SH15127 15127 MT tRNA Phe 5' / tRNA 23.022663 101.252888 23.022663 79.230225 51.126444 1.708645587 0.024171 75 85 SH8228 8228 snoRNA cluster 3; 3' 24.49918 113.227065 24.49918 89.727885 57.1135325 1.756739022 0.024166 8 56 SH8082 8082 snoRNA cluster 2 3' 23.05229 101.478433 23.05229 79.426143 51.2392165 1.70960248 0.024159 213 42 SH4999 4999 snR10 snR10 26 42 26.684089 102.626487 64.655288 1.810604051 0.024152 8 44 SH13428 13428 MT COX1 intronic 23.68536 106.551705 23.68536 83.866345 53.7758525 1.730587304 0.024148 71 8 SH8011 8011 snoRNA cluster 2 intergenic 23.011386 101.169832 23.011386 79.158446 51.084916 1.708292684 0.024141 40 98 SH19217 19217 YPL081W_16_404945_406039_INTRON_8_508 intron 75.498552 249.062315 75.498552 174.563763 125.0311575 2.097018252 0.02414 154 8 SH9141 9141 snR7 U5 RNA 5' 22.988167 79.006306 50.9972365 1.707546643 0.024136 37 64 SH20465 20465 YGL183C spliced 94.621352 201.927923 148.2746375 2.171066871 0.024119 27 13 SH2832 2832 Pro7 5' flank 24.43755 89.291604 56.864577 1.754841813 0.024104 133 77 SH17299 17299 YHR141C_8_382752_381991_INTRON_5_445 3' exon 1510.592636 3538.199872 1510.592636 2028.607236 1769.599936 3.247875094 0.024055 134 10 SH2519 2519 Pro1 3' flank 42.195103 127.649704 84.9224035 1.929022277 0.024052 9 13 SH16563 16563 YER133W_5_432491_433954_INTRON_178_702 intron 67.649706 230.072749 67.649706 163.423043 115.5363745 2.062718735 0.024012 24 62 SH11295 11295 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3361 3379 23.216009 80.557723 51.886866 1.71505744 0.024002 47 26 SH16934 16934 YGR027C_7_534779_534126_INTRON_1_312 exon/intron 23.149636 102.244987 23.149636 80.095351 51.6224935 1.712838978 0.02398 30 47 SH11327 11327 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3521 3536 234.632539 397.590592 316.1115655 2.499840386 0.023961 210 28 SH12416 12416 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.955716 117.012507 24.955716 93.056791 59.0062535 1.770898041 0.023935 76 37 SH15975 15975 YDL136W_4_217600_218367_INTRON_4_408 intron 25.62326 122.138919 25.62326 97.515659 61.5694595 1.789365341 0.02391 160 86 SH7632 7632 snR189 3' 22.966707 78.883661 50.925184 1.706932607 0.023906 205 55 SH12221 12221 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.388633 126.601699 26.388633 101.213066 63.8008495 1.804826461 0.023892 136 57 SH3218 3218 Thr1 5' flank 23.240634 80.740839 51.9907365 1.71592597 0.023877 79 76 SH21395 21395 Pro2_7 spliced 53.974285 144.208165 99.091225 1.996035197 0.023862 31 77 SH16710 16710 YGL031C_7_438393_437938_INTRON_1_456 intron 25.657703 122.343245 25.657703 97.685542 61.6716225 1.790085374 0.023856 102 39 SH1510 1510 Leu3 tRNA 21 35 25.775232 98.251417 62.0133245 1.792485014 0.023856 153 47 SH15934 15934 YDL115C_4_255042_253994_INTRON_1_88 exon/intron 25.928561 123.919562 25.928561 98.991001 62.459781 1.795600457 0.023852 120 88 SH14141 14141 MT COB intronic 24.127167 110.209112 24.127167 87.081945 55.604556 1.745110377 0.023843 110 67 SH8111 8111 snoRNA cluster 3; 5' 22.339021 96.161105 22.339021 74.822084 48.5805525 1.68646245 0.023809 57 70 SH4635 4635 snR3 snR3 91 108 106.873332 219.543162 163.208247 2.2127421 0.023797 187 44 SH17680 17680 YKL006W_11_431544_432358_INTRON_130_527 intron 41.42527 166.996761 41.42527 126.571491 83.9983805 1.924270913 0.023774 159 51 SH10767 10767 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 721 736 32.54759 113.993724 73.270657 1.864930086 0.023746 188 72 SH20036 20036 YBR186W spliced 25.435048 96.615368 61.025208 1.785509268 0.023706 145 68 SH12537 12537 MT_ORF6 + ORF7 (hypothetical) ORF6/7 28.699914 135.6344 28.699914 107.934486 68.3172 1.834530058 0.023694 205 24 SH4435 4435 telomerase RNA telomerase 1211 1228 24.955287 93.07803 59.0166585 1.770974616 0.023679 8 11 SH20612 20612 YHR079C-A spliced 33.322832 115.08475 74.203791 1.870426094 0.023653 198 69 SH16823 16823 YGL178W_7_167356_170575_INTRON_4_643 intron 24.835722 116.04429 24.835722 92.208568 58.522145 1.767320236 0.023651 63 66 SH13492 13492 MT COX1 intronic / Exon5g 21.57016 90.617572 21.57016 70.047412 45.808786 1.660948782 0.023631 44 104 SH9547 9547 RUF3 RUF3 121 138 24.021517 86.334304 55.1779105 1.74176525 0.023618 147 93 SH10043 10043 RUF6 RUF6 61 77 24.512202 89.871913 57.1920575 1.757335721 0.023617 84 78 SH19851 19851 Negative Control 25.996876 99.341545 62.6692105 1.797054224 0.023586 87 10 SH3887 3887 RNaseP 3' 23.820336 84.884454 54.352395 1.735218686 0.023578 83 75 SH10478 10478 RUF8 RUF8 316 332 26.035084 99.526888 62.780986 1.797828132 0.023576 171 59 SH5294 5294 snR30 snR30 321 333 38930.68163 35339.18208 37134.93185 4.569782631 0.023571 146 4 SH10853 10853 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1151 1166 42.931669 128.722339 85.827004 1.933623953 0.023537 10 81 SH9063 9063 snR14 / U4 RNA 5' 24.707385 91.292845 58.000115 1.763428855 0.023481 160 90 SH4333 4333 telomerase RNA telomerase 701 720 27.089974 104.659795 65.8748845 1.818719867 0.023466 171 27 SH9556 9556 RUF3 RUF3 166 178 7908.699711 8700.54973 8304.624721 3.919320012 0.023466 190 15 SH15757 15757 YCR031C_3_178212_177492_INTRON_8_314 intron 23.809738 107.629916 23.809738 84.820178 54.314958 1.734919448 0.023444 148 13 SH20178 20178 YDL189W spliced 24.86518 92.447315 58.6562475 1.768314276 0.023395 118 13 SH16856 16856 YGL183C_7_157071_156547_INTRON_4_86 3' exon 128.772359 378.233181 128.772359 250.460822 189.6165905 2.277876333 0.023384 197 101 SH20832 20832 YKR095W-A spliced 26.985644 104.158102 65.571873 1.816717589 0.023374 14 68 SH2407 2407 Phe4 86-91 + 3' flank 86 22.758124 77.562071 50.1600975 1.700358372 0.02337 24 86 SH12197 12197 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7871 7889 25.037427 93.710194 59.3738105 1.773594922 0.02336 142 83 SH21725 21725 copy of SH11920 380.076596 599.516537 489.7965665 2.690015736 0.023358 146 97 SH16496 16496 YER117W_5_396765_397649_INTRON_43_513 intron 28.123783 133.920398 28.123783 106.796615 67.460199 1.829047618 0.023351 168 24 SH2397 2397 Phe4 tRNA-exon/intron 36 53 29.05903 108.670683 68.8648565 1.837997647 0.023341 45 62 SH8952 8952 snR17a / U3a U3a 46 65 31.416443 112.434491 71.925467 1.85688269 0.02333 39 17 SH12552 12552 MT_15S 5' 24.335184 111.966092 24.335184 88.630908 56.483046 1.751918109 0.023323 105 27 SH17804 17804 YKL190W_11_82949_83552_INTRON_53_128 intron 25.114346 118.396326 25.114346 94.28198 59.698163 1.775960967 0.023292 126 83 SH3903 3903 RNase MRP 5' 29.655995 109.855317 69.755656 1.843579427 0.02328 64 90 SH7224 7224 snR64 3' 25.58695 97.390447 61.4886985 1.788795301 0.023264 43 15 SH729 729 Gln4 5' flank 67.065675 162.665681 114.865678 2.06019028 0.023227 13 42 SH4473 4473 U3b (snR17b) 5' 25.345518 95.998235 60.6718765 1.782987427 0.023214 164 102 SH17887 17887 YLR048W_12_242233_243350_INTRON_91_449 intron 25.403722 120.834613 25.403722 96.430891 60.9173065 1.784740692 0.023214 127 85 SH7454 7454 snR69 3' 26.177996 100.246842 63.212419 1.80080241 0.023208 45 47 SH13336 13336 MT COX1 COX1-ai5a 22.619509 98.294804 22.619509 76.675295 49.647402 1.695896527 0.023195 17 79 SH19822 19822 Negative Control 34.721633 117.078544 75.9000885 1.880242282 0.023184 89 96 SH5619 5619 snR34 snR34 16 32 25.749748 98.184434 61.967091 1.792161109 0.023132 189 8 SH7054 7054 snR62 snR62 61 80 26.533474 101.97657 64.255022 1.807907077 0.023131 112 75 SH8335 8335 snoRNA cluster4 snR53 37.735984 158.068 37.735984 121.332016 79.534 1.900552825 0.023112 47 66 SH9926 9926 RUF5-1 RUF5-1 436 456 26.22786 100.496669 63.3622645 1.80183069 0.023101 35 13 SH6058 6058 snR37 snR37 206 223 26.114164 99.947868 63.031016 1.799554308 0.023082 103 50 SH208 208 Arg2 3' flank 24.224636 87.863811 56.0442235 1.748530856 0.023078 159 72 SH3594 3594 Val1 5' flank 24.523816 90.005696 57.264756 1.757887415 0.023073 164 85 SH1981 1981 Lys2 3' flank 26.626977 102.436816 64.5318965 1.809774429 0.023058 149 23 SH18779 18779 YNL265C_14_145280_144279_INTRON_28_132 intron 26.863992 129.454925 26.863992 103.590933 65.2274625 1.814430484 0.023055 200 8 SH2167 2167 Met2 5' flank 26.331737 101.006448 63.6690925 1.80392866 0.023019 2 52 SH20318 20318 YER044C-A spliced 23.865828 85.263461 54.5646445 1.73691133 0.023001 168 39 SH15359 15359 YBL026W_2_170585_171000_INTRON_55_182 intron 24.692045 114.918877 24.692045 91.226832 57.9594385 1.763124169 0.022999 205 95 SH4786 4786 snR5 snR5 101 118 23.869715 85.295132 54.5824235 1.737052815 0.022961 190 100 SH257 257 Arg3 3' flank 49.402749 137.872842 93.6377955 1.971451181 0.022959 10 75 SH19741 19741 Negative Control 110.775587 225.214944 167.9952655 2.225297042 0.022939 17 97 SH8502 8502 snR19 / U1 RNA U1 6 24 145.436442 273.80008 209.618261 2.321429114 0.022938 116 5 SH10432 10432 RUF8 RUF8 86 101 29.153741 108.882404 69.0180725 1.838962826 0.022933 170 9 SH21827 21827 copy of SH16122 24.632412 90.803895 57.7181535 1.761312429 0.022909 164 11 SH1605 1605 Leu4 3' flank 51.548701 140.909618 96.2291595 1.983306693 0.022905 74 28 SH3239 3239 Thr1 tRNA 51 67 31.358592 112.376713 71.8676525 1.856533459 0.022888 204 36 SH9348 9348 RUF1 RUF1 316 335 24.455177 89.530011 56.992594 1.755818424 0.022883 80 21 SH14760 14760 MT ORF11; tRNA Leu; tRNA Gln ORF11 23.945947 108.800508 23.945947 85.854561 54.900254 1.739574354 0.022864 187 102 SH7336 7336 snR68 5' 26.033778 99.577273 62.8055255 1.797997854 0.02285 43 99 SH19458 19458 CYC1 26.420388 101.455228 63.937808 1.805757743 0.022783 141 34 SH16836 16836 YGL178W_7_167356_170575_INTRON_4_643 intron 25.020913 117.66613 25.020913 93.645217 59.333065 1.773296784 0.022776 174 49 SH18637 18637 YNL096C_14_444312_443395_INTRON_145_489 intron 26.823761 129.241498 26.823761 103.417737 65.120749 1.813719387 0.022773 173 48 SH4656 4656 snR3 3' 22.648986 76.906486 49.777736 1.69703514 0.022678 86 37 SH15732 15732 YBR230C_2_680008_679507_INTRON_12_108 intron 24.123689 110.289343 24.123689 87.165654 55.6446715 1.745423583 0.022647 204 77 SH19283 19283 YPL143W_16_282121_282969_INTRON_20_544 intron 21.842518 92.624178 21.842518 71.78166 46.812089 1.670358022 0.022635 121 44 SH12656 12656 MT_15S MT_15S 23.651163 106.407171 23.651163 83.756008 53.7035855 1.730003282 0.022618 189 60 SH11951 11951 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6641 6654 27.015734 104.368074 65.691904 1.81751185 0.022602 27 28 SH4935 4935 snR9 snR9 81 98 36.823245 120.028562 78.4259035 1.894459531 0.022593 151 64 SH18806 18806 YNL301C_14_64561_63569_INTRON_113_544 intron 22.805684 99.740075 22.805684 77.934391 50.3700375 1.702172274 0.022579 140 46 SH19123 19123 YPL031C_16_493033_492014_INTRON_18_119 3' exon 25.165895 118.897613 25.165895 94.731718 59.9488065 1.777780541 0.022571 187 32 SH8464 8464 snoRNA cluster 5 3' 24.338376 112.061178 24.338376 88.722802 56.530589 1.75228351 0.022563 25 53 SH10866 10866 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1216 1231 105.769229 218.138479 161.953854 2.209391287 0.022482 144 66 SH6454 6454 snR45 snR45 116 135 23.540671 82.980936 53.2608035 1.726407714 0.02247 99 16 SH14170 14170 MT COB intronic 24.002229 109.30046 24.002229 86.298231 55.15023 1.741547328 0.022467 40 70 SH4188 4188 telomerase RNA 5' 23.186548 80.482139 51.8343435 1.714617602 0.022449 33 97 SH3555 3555 Tyr2 tRNA-intron/exon 46 63 28.613539 107.835737 68.224638 1.83394124 0.022399 22 68 SH15053 15053 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.620162 114.384497 24.620162 90.764335 57.6922485 1.761117465 0.022383 9 70 SH7466 7466 snR71 5' 24.785647 91.966512 58.3760795 1.766234925 0.022357 126 31 SH19026 19026 YOR182C_15_678792_678190_INTRON_4_414 intron 25.918243 123.979251 25.918243 99.061008 62.4896255 1.795807922 0.02231 64 75 SH12749 12749 MT COX1 COX1ai1 27.236111 131.287172 27.236111 105.051061 66.143586 1.820487737 0.022278 94 20 SH14998 14998 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 24.098512 110.115053 24.098512 87.016541 55.5575265 1.744742902 0.022268 132 37 SH15475 15475 YBL091C-A_2_46858_46559_INTRON_35_122 intron 27.281714 131.427514 27.281714 105.1458 66.213757 1.820948231 0.022256 156 45 SH19232 19232 YPL090C_16_378390_377286_INTRON_7_400 intron 24.945304 117.089994 24.945304 93.14469 59.044997 1.771183105 0.022217 85 56 SH4268 4268 telomerase RNA telomerase 376 393 26.345966 101.139421 63.7426935 1.804430411 0.022213 189 36 SH9829 9829 RUF5-1 5' 24.268065 88.253665 56.260865 1.750206405 0.022203 15 16 SH17442 17442 YIL133C_9_99416_98527_INTRON_32_321 intron 27.723006 132.772822 27.723006 106.049816 66.886411 1.825337893 0.022197 213 88 SH20037 20037 YBR186W spliced 26.480005 101.792704 64.1363545 1.807104271 0.022182 98 41 SH10338 10338 RUF7 RUF7 301 320 23.871402 85.379276 54.625339 1.737394145 0.022154 134 11 SH16786 16786 YGL103W_7_310965_311925_INTRON_50_560 intron 26.1391 125.283022 26.1391 100.143922 63.141511 1.800314971 0.022121 164 66 SH2530 2530 Pro1 3' flank 26.284701 100.851191 63.567946 1.803238179 0.0221 65 63 SH17186 17186 YHR021C_8_148660_147862_INTRON_4_553 intron 27.699082 132.70773 27.699082 106.008648 66.853865 1.82512652 0.022064 191 22 SH18363 18363 YMR079W_13_424988_426058_INTRON_10_165 5' exon 29.110905 136.958564 29.110905 108.847659 68.979282 1.83871867 0.022062 168 94 SH21281 21281 YPL129W spliced 29.286887 109.197136 69.2420115 1.840369676 0.022059 21 37 SH3886 3886 RNaseP 3' 23.157133 80.310659 51.733896 1.713775186 0.022039 92 48 SH16740 16740 YGL076C_7_365994_364333_INTRON_565_1032 intron 212.524837 578.947212 212.524837 367.422375 289.973606 2.462358469 0.022019 159 21 SH20134 20134 YDL083C spliced 25.283208 95.659816 60.471512 1.781550828 0.021954 180 35 SH17730 17730 YKL156W_11_158616_159214_INTRON_4_353 intron 23.644874 106.415401 23.644874 83.770527 53.7077005 1.730036558 0.021939 68 27 SH19858 19858 Negative Control 26.008556 99.527673 62.7681145 1.797739083 0.021923 75 96 SH10291 10291 RUF7 RUF7 66 83 26.257818 100.736184 63.497001 1.802753214 0.021906 67 69 SH19808 19808 Negative Control 26.416819 101.507856 63.9623375 1.805924327 0.021905 11 29 SH4889 4889 snR8 3' 23.345885 81.65231 52.4990975 1.720151838 0.021866 68 9 SH374 374 Asn1 5' flank 23.532694 82.979504 53.256099 1.726369351 0.021832 132 82 SH17256 17256 YHR101C_8_315970_314876_INTRON_111_197 5' exon 27.54506 132.253273 27.54506 105.708213 66.6266365 1.823647889 0.021826 103 4 SH14812 14812 "MT tRNAs (Lys, Arg1, Gly)" tRNA Arg1 24.824265 116.124397 24.824265 92.300132 58.5621985 1.767617372 0.021802 4 39 SH13961 13961 MT COB Cytbi3 24.997691 117.570678 24.997691 93.572987 59.285339 1.772947308 0.021754 98 60 SH6503 6503 snR46 snR46 6 20 25.140881 94.632575 59.886728 1.777330585 0.021691 173 35 SH5908 5908 snR36 5' - 11 -4 11 163.3063 298.903966 231.105133 2.363809592 0.021681 74 34 SH127 127 Arg1 11-23 11 23 29.440969 109.524348 69.4826585 1.841876427 0.021677 69 44 SH9046 9046 snR17a / U3a 3' 23.378935 81.905565 52.64225 1.721334443 0.021635 164 26 SH15183 15183 MT COX3 cox3 24.559707 113.958204 24.559707 90.398497 57.479102 1.759509975 0.021622 83 54 SH2079 2079 Lys4 tRNA 61 75 220.295707 378.267615 299.281661 2.476080106 0.021619 90 99 SH105 105 Arg1 5' flank 25.677566 97.954385 61.8159755 1.791100727 0.0216 117 98 SH14104 14104 MT COB Cytbi4 26.989393 130.313058 26.989393 104.323665 65.656529 1.81727792 0.021573 81 30 SH15972 15972 YDL136W_4_217600_218367_INTRON_4_408 5' exon 54.07658 197.612044 54.07658 144.535464 99.306022 1.996975585 0.021491 6 83 SH15858 15858 YDL079C_4_314747_312950_INTRON_413_704 intron 24.81271 116.058707 24.81271 92.245997 58.5293535 1.767373727 0.021484 70 87 SH16038 16038 YDL191W_4_117665_118518_INTRON_4_494 intron 24.534547 113.764421 24.534547 90.229874 57.3822105 1.758777274 0.021484 145 11 SH1278 1278 Ile2 tRNA-intron/exon 86 102 26.824561 103.528161 65.176361 1.814090109 0.021461 12 57 SH16804 16804 YGL137W_7_249872_252741_INTRON_19_218 intron 24.791388 115.885589 24.791388 92.094201 58.4427945 1.766730974 0.021447 166 47 SH16239 16239 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 24.35392 112.291121 24.35392 88.937201 56.6455605 1.753165878 0.021431 170 10 SH19418 19418 YPR132W_16_794960_795762_INTRON_66_430 intron 24.555551 113.942284 24.555551 90.386733 57.471142 1.759449827 0.021426 28 24 SH2736 2736 Pro5 tRNA-intron/exon 61 75 53.901613 144.29141 99.0965115 1.996058366 0.021425 6 79 SH3541 3541 Tyr2 5' flank 27.550465 105.745478 66.6479715 1.823786936 0.021359 97 23 SH19429 19429 YPR132W_16_794960_795762_INTRON_66_430 intron 24.068928 109.956421 24.068928 86.887493 55.4782105 1.744122444 0.021317 2 71 SH19973 19973 YBL087C spliced 24.368492 89.052886 56.710689 1.753664924 0.021306 147 40 SH2393 2393 Phe4 tRNA 16 28 73.69645 172.27533 122.98589 2.089855288 0.021296 131 2 SH13922 13922 MT COB Cytbi3 25.186831 119.198855 25.186831 95.012024 60.0994275 1.778870335 0.02128 115 86 SH16394 16394 YER044C-A_5_239773_238459_INTRON_64_151 intron/exon 24.413989 112.796906 24.413989 89.382917 56.898453 1.755100459 0.021265 42 61 SH14382 14382 MT ORF9 and ORF10 (hypothetical) 3' 23.351359 104.095073 23.351359 81.743714 52.5475365 1.720552361 0.021249 156 83 SH12011 12011 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6941 6958 31.816638 113.114681 72.4656595 1.860132249 0.021198 156 42 SH9259 9259 snR6 / U6 RNA 3' 23.914402 85.776536 54.845469 1.739140755 0.02119 55 35 SH11701 11701 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5391 5404 30653.55577 28680.95725 29667.25651 4.472277387 0.021175 176 48 SH15362 15362 YBL027W_2_168385_169338_INTRON_3_386 5' exon 26.923077 129.955418 26.923077 104.032341 65.477709 1.816093475 0.021174 198 77 SH1414 1414 Leu1 3' flank 299.570846 488.927803 394.2493245 2.595770958 0.021115 52 3 SH13431 13431 MT COX1 intronic 23.57788 105.942026 23.57788 83.364146 53.471013 1.728118412 0.021113 47 37 SH6972 6972 snR60 5' 22.824606 78.173637 50.4991215 1.703283823 0.021111 79 65 SH9710 9710 RUF4 RUF4 326 341 25.933731 99.22997 62.5818505 1.796448401 0.0211 121 100 SH2187 2187 Met2 66-72 + 3' flank 66 25.003769 93.682189 59.342979 1.773369344 0.021081 106 22 SH9884 9884 RUF5-1 RUF5-1 226 240 24.951359 93.298357 59.124858 1.771770111 0.021074 194 16 SH1390 1390 Leu1 tRNA 21 35 26.03477 99.725718 62.880244 1.798514218 0.021013 202 56 SH5159 5159 snR13 5' 26.490531 101.937372 64.2139515 1.807629396 0.021012 97 45 SH1344 1344 Ile3 tRNA 101 113 30.182539 110.793668 70.4881035 1.848115826 0.020998 154 102 SH1259 1259 Ile2 5' flank - tRNA7 7 25.028977 93.875887 59.452432 1.774169625 0.020993 57 19 SH18638 18638 YNL096C_14_444312_443395_INTRON_145_489 intron/exon 22.532073 97.81132 22.532073 76.279247 49.40566 1.693776705 0.020991 43 2 SH4759 4759 snR5 5' 27.641281 105.951711 66.796496 1.824753681 0.020984 56 10 SH7257 7257 snR65 snR65 61 80 23.273096 81.217038 52.245067 1.71804529 0.02095 171 47 SH14204 14204 MT COB 3' 22.576287 98.146387 22.576287 76.5701 49.5731935 1.695246897 0.020933 135 29 SH11727 11727 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5521 5539 89.948949 195.571 142.7599745 2.154606462 0.02091 58 17 SH4446 4446 telomerase RNA telomerase 1266 1278 91.320156 197.518413 144.4192845 2.159625189 0.020903 199 33 SH153 153 Arg1 3' flank 24.356516 89.00486 56.680688 1.753435113 0.020893 158 28 SH19600 19600 AEP2/ATP13 2.1 25.046036 94.011586 59.528811 1.774727208 0.020887 79 18 SH14629 14629 MT 21S rRNA Sce1 endonuc 23.928147 108.833799 23.928147 85.905652 54.9168995 1.73970601 0.020861 199 26 SH12081 12081 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7291 7309 28.35989 107.4143 67.887095 1.831787225 0.020859 211 94 SH13349 13349 MT COX1 COX1-ai5a / intronic 24.513751 113.652336 24.513751 90.138585 57.326168 1.758352912 0.02085 8 74 SH5997 5997 snR37 5' 25.294453 95.854568 60.5745105 1.782289913 0.020821 210 89 SH8809 8809 LSR1 / U2 RNA U2 686 700 24.524553 90.225253 57.374903 1.758721964 0.020755 45 96 SH7452 7452 snR69 3' 28.046246 106.788105 67.4171755 1.828770553 0.020737 110 95 SH11538 11538 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4576 4589 1041.320521 1456.567065 1248.943793 3.096542894 0.020737 32 61 SH9929 9929 RUF5-1 RUF5-1 451 468 35.508496 118.308324 76.90841 1.885973833 0.020704 88 79 SH21481 21481 copy of SH1654 22.413483 75.539344 48.9764135 1.689986979 0.020657 98 48 SH2971 2971 Ser1 3' flank 22.249557 74.487025 48.368291 1.684560743 0.020656 84 36 SH9408 9408 RUF1 3' 22.035705 73.1277 47.5817025 1.677439977 0.020617 25 25 SH16048 16048 YDL191W_4_117665_118518_INTRON_4_494 intron 21.99726 93.881625 21.99726 72.884365 47.4408125 1.676152118 0.020612 104 52 SH6498 6498 snR46 5' 30.072575 110.656671 70.364623 1.847354365 0.020575 76 11 SH9145 9145 snR7 U5 RNA 5' - 8 -4 8 50.944509 140.233844 95.5891765 1.98040872 0.020565 11 89 SH17744 17744 YKL157W_11_154993_158183_INTRON_282_664 5' exon 29.242622 137.440072 29.242622 109.19745 69.220036 1.840231821 0.020538 158 96 SH14046 14046 MT COB Cytbi4 26.932553 130.063342 26.932553 104.130789 65.531671 1.816451242 0.020536 35 49 SH9996 9996 RUF5-1 3' 39.552812 124.100818 81.826815 1.912895647 0.020489 65 29 SH9430 9430 RUF2 5' - 10 -9 10 29.795522 110.259168 70.027345 1.845267661 0.020455 179 11 SH13643 13643 MT ATP6 ATP6 25.405976 121.127962 25.405976 96.721986 61.063981 1.785785114 0.020445 115 13 SH8290 8290 snoRNA cluster4 intergenic 30.797002 141.507591 30.797002 111.710589 71.2537955 1.852808003 0.020419 115 31 SH3217 3217 Thr1 5' flank 24.507011 90.132095 57.319553 1.758302795 0.020395 68 23 SH5378 5378 snR31 5' 22.295407 74.80123 48.5483185 1.686174192 0.020384 152 73 SH2461 2461 Phe5 tRNA 76 90 253.488266 424.748535 339.1184005 2.530351355 0.020375 37 81 SH9961 9961 RUF5-1 RUF5-1 611 630 25.436539 96.887059 61.161799 1.786480251 0.020371 37 60 SH14468 14468 MT 21S rRNA 21S rRNA3 23.209842 103.032234 23.209842 80.822392 52.016117 1.716137929 0.020354 139 73 SH12603 12603 MT_15S MT_15S 24.087853 110.201455 24.087853 87.113602 55.6007275 1.745080474 0.020349 107 99 SH19477 19477 ADH1 24.345984 88.983112 56.664548 1.753311429 0.020305 159 28 SH10180 10180 RUF6 RUF6 746 760 29.190218 109.107633 69.1489255 1.839785436 0.020292 18 100 SH8014 8014 snoRNA cluster 2 intergenic 25.961353 124.388651 25.961353 99.427298 62.6943255 1.797228234 0.020283 154 56 SH3870 3870 RNaseP RNaseP 316 332 24.863822 92.733291 58.7985565 1.769366664 0.02028 163 39 SH13455 13455 MT COX1 intronic 24.277706 111.782338 24.277706 88.504632 56.391169 1.751211098 0.020194 163 53 SH4834 4834 snR8 5' 22.292185 74.795627 48.543906 1.686134718 0.020184 130 22 SH16671 16671 YFR032C-A_6_223758_223245_INTRON_1_331 intron 29.476466 138.158611 29.476466 109.682145 69.5793055 1.84248009 0.020171 175 10 SH21920 21920 copy of SH20200 27.103984 104.897166 66.000575 1.819547719 0.02017 29 45 SH17776 17776 YKL180W_11_109271_110131_INTRON_310_615 intron 29.878998 139.275687 29.878998 110.396689 70.1378435 1.845952409 0.020163 16 62 SH4712 4712 snR4 snR4 96 112 24.382594 89.259686 56.82114 1.754509943 0.020151 28 60 SH7373 7373 snR68 snR68 86 107 22.498877 76.133953 49.316415 1.692991499 0.020088 65 93 SH19200 19200 YPL081W_16_404945_406039_INTRON_8_508 intron 21.814477 92.605661 21.814477 71.791184 46.8028305 1.670272119 0.020086 95 94 SH16929 16929 YGR001C_7_498029_497128_INTRON_36_97 intron/exon 29.51049 138.264914 29.51049 109.754424 69.632457 1.84281172 0.020086 151 82 SH19233 19233 YPL090C_16_378390_377286_INTRON_7_400 intron 25.560738 122.069085 25.560738 97.508347 61.5345425 1.789118976 0.02007 185 38 SH1155 1155 His1 5' flank - tRNA12 12 26.258038 100.883117 63.5705775 1.803256157 0.020062 51 36 SH17846 17846 YKR094C_11_618384_617630_INTRON_9_376 intron 28.49845 135.237847 28.49845 107.739397 68.1189235 1.833267776 0.020047 119 77 SH9455 9455 RUF2 RUF2 116 133 25.878431 99.046337 62.462384 1.795618556 0.020023 26 81 SH4806 4806 snR5 201-204 + 3' 201 23.134385 80.322253 51.728319 1.713728365 0.020004 95 21 SH12144 12144 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7606 7624 26.168111 100.451195 63.309653 1.801469933 0.020004 96 80 SH4007 4007 SRP RNA 5' 22.705274 77.480971 50.0931225 1.699778104 0.020003 45 71 SH3871 3871 RNaseP RNaseP 321 335 65.208053 160.297325 112.752689 2.052126908 0.01999 33 77 SH9639 9639 RUF4 5' 25.689025 98.133717 61.911371 1.791770421 0.019987 191 5 SH17785 17785 YKL180W_11_109271_110131_INTRON_310_615 3' exon 26.655864 128.480817 26.655864 102.824953 64.7404085 1.811175435 0.019985 136 16 SH6010 6010 snR37 5' 22.439406 75.759291 49.0993485 1.69107573 0.019964 114 70 SH13545 13545 MT COX1 intronic 23.058275 101.863742 23.058275 79.805467 51.431871 1.711232323 0.019929 46 54 SH15697 15697 YBR220C_2_663261_662457_INTRON_302_722 intron 24.965115 117.474704 24.965115 93.509589 59.237352 1.772595637 0.019923 88 9 SH3834 3834 RNaseP RNaseP 136 150 23.850998 85.431801 54.6413995 1.737521814 0.019917 43 45 SH7813 7813 snoRNA cluster1 intergenic 28.771795 136.067066 28.771795 108.295271 68.533533 1.835903121 0.019912 161 24 SH17874 17874 YLR048W_12_242233_243350_INTRON_91_449 5' exon 24.53202 113.889615 24.53202 90.357595 57.4448075 1.759250778 0.019908 24 42 SH1856 1856 Leu9 tRNA 21 37 46.953017 134.65509 90.8040535 1.958105236 0.019897 40 5 SH5056 5056 snR10 3' 24.97173 93.563499 59.2676145 1.772817447 0.019867 33 80 SH10468 10468 RUF8 RUF8 266 287 25.816306 98.761073 62.2886895 1.794409194 0.019827 184 34 SH266 266 Arg4 5' flank 24.112531 87.343725 55.728128 1.746074455 0.019803 8 46 SH20733 20733 YJL189W spliced 33.481021 115.528454 74.5047375 1.872183889 0.019778 31 100 SH21220 21220 YOR182C spliced 26.483143 102.000125 64.241634 1.807816579 0.019778 211 75 SH8325 8325 snoRNA cluster4 intergenic 23.986643 109.416028 23.986643 86.429385 55.208014 1.742002125 0.019762 38 71 SH13689 13689 MT ORF 5 (hypothetical) ORF5 25.432055 121.344486 25.432055 96.912431 61.172243 1.786554405 0.019753 14 41 SH14533 14533 MT 21S rRNA 21S rRNA3 23.17873 102.8348 23.17873 80.65607 51.9174 1.715312935 0.019735 175 47 SH5536 5536 snR33 5' 22.749443 77.790527 50.269985 1.701308756 0.019733 31 67 SH21054 21054 YMR143W spliced 25.348559 96.365134 60.8568465 1.784309444 0.019725 146 33 SH19453 19453 CYC1 23.512373 83.021505 53.266939 1.726457741 0.019682 196 77 SH936 936 Gly1 5' flank 23.426476 82.411338 52.918907 1.723610866 0.019671 98 58 SH8862 8862 LSR1 / U2 RNA U2 951 967 25.327911 96.217743 60.772827 1.783709439 0.01966 50 22 SH12996 12996 MT COX1 COX1ai2 31.311859 142.798456 31.311859 112.486597 71.899228 1.856724227 0.019648 34 57 SH14172 14172 MT COB intronic 24.921995 117.142655 24.921995 93.22066 59.0713275 1.771376731 0.019636 172 24 SH9643 9643 RUF4 5' - 5 -9 5 32.272011 113.838014 73.0550125 1.863650019 0.019626 156 90 SH21750 21750 copy of SH12971 25.572205 97.599821 61.586013 1.789482089 0.019598 161 46 SH15501 15501 YBL092W_2_45639_46364_INTRON_1_333 3' exon 28.534975 135.3736 28.534975 107.838625 68.1868 1.83370031 0.019595 188 100 SH13361 13361 MT COX1 intronic 23.908181 108.783145 23.908181 85.874964 54.8915725 1.739505672 0.019592 138 51 SH707 707 Gln3 66-72 + 3' flank 66 3' flank 24.329856 88.932987 56.6314215 1.753057463 0.019588 214 42 SH17042 17042 YGR183C_7_859471_859058_INTRON_4_216 intron 24.42443 113.037363 24.42443 89.612933 57.0186815 1.75601717 0.019577 73 27 SH15993 15993 YDL136W_4_217600_218367_INTRON_4_408 intron/exon 23.238561 103.330442 23.238561 81.091881 52.165221 1.717381052 0.019558 214 8 SH19212 19212 YPL081W_16_404945_406039_INTRON_8_508 intron 23.571434 106.02534 23.571434 83.453906 53.51267 1.728456621 0.019557 22 75 SH5474 5474 snR32 snR32 31 50 22.635315 77.063954 49.8496345 1.697661978 0.019507 121 76 SH1881 1881 Leu9 3' flank 1483.502423 2001.98805 1742.745237 3.241233904 0.019506 173 77 SH21070 21070 YMR225C spliced 82.858286 185.548249 134.2032675 2.12776309 0.019494 195 95 SH20105 20105 YDL061C spliced 27.362285 105.466164 66.4142245 1.822261106 0.019478 18 19 SH21837 21837 copy of SH16602 22.921351 78.939269 50.93031 1.70697632 0.019463 86 76 SH7237 7237 snR65 5' 33.776258 115.965556 74.870907 1.874313094 0.019455 121 3 SH13240 13240 MT COX1 COX1-ai4 24.996079 117.778305 24.996079 93.782226 59.3891525 1.773707128 0.019453 24 9 SH15730 15730 YBR230C_2_680008_679507_INTRON_12_108 intron 25.363543 120.868355 25.363543 96.504812 60.9341775 1.784860953 0.019443 193 55 SH18276 18276 YML056C_13_164176_162194_INTRON_461_868 intron 23.785268 107.784565 23.785268 84.999297 54.3922825 1.735537284 0.019443 5 47 SH2944 2944 Ser1 5' flank 24.026278 86.749278 55.387778 1.743413943 0.019417 168 98 SH14338 14338 MT VAR1 includes 5’ processing site VAR1 23.261744 103.529557 23.261744 81.267813 52.2647785 1.718209114 0.019411 74 89 SH88 88 Ala2 3' flank 22.742752 77.773952 50.258352 1.701208244 0.019387 188 56 SH5923 5923 snR36 snR36 71 88 27.26759 105.277642 66.272616 1.821334114 0.019376 87 2 SH6136 6136 snR39B snR39B 21 38 25.672838 98.1044 61.888619 1.791610792 0.019353 64 18 SH16322 16322 YDR471W_4_1401759_1402553_INTRON_32_415 intron 234.095209 631.099063 234.095209 398.003854 316.0495315 2.499755151 0.019337 199 40 SH1326 1326 Ile3 tRNA 11 25 28.889303 108.563627 68.726465 1.837124006 0.019331 110 59 SH17707 17707 YKL081W_11_282533_284097_INTRON_206_531 intron 79.398371 259.02267 79.398371 180.624299 130.011335 2.113981218 0.019328 73 75 SH2200 2200 Met2 3' flank 25.93131 99.359154 62.645232 1.796888022 0.019292 141 46 SH12256 12256 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.218607 125.972903 26.218607 100.754296 63.4864515 1.802681053 0.019269 20 70 SH9077 9077 snR14 / U4 RNA U4 1 15 43.454713 129.736922 86.5958175 1.937496916 0.019255 181 12 SH1902 1902 Lys1 5' flank 23.418606 82.391872 52.905239 1.723498681 0.019248 76 19 SH17836 17836 YKR094C_11_618384_617630_INTRON_9_376 intron 25.648037 122.640748 25.648037 97.992711 61.820374 1.791131628 0.019247 137 33 SH7098 7098 snR63 5' - 13 -4 13 77.687547 178.161584 127.9245655 2.106953951 0.019231 85 5 SH4919 4919 snR9 snR9 1 20 174.036804 314.412351 244.2245775 2.387789367 0.019224 61 32 SH9794 9794 RUF4 RUF4 746 763 24.814424 92.47402 58.644222 1.768225229 0.01921 202 3 SH12502 12502 MT_tRNA Pro 3' 26.238369 126.094891 26.238369 100.856522 63.5474455 1.803098097 0.019191 146 27 SH12876 12876 MT COX1 COX1ai1 23.395381 104.630301 23.395381 82.23492 52.8151505 1.722758522 0.019156 178 50 SH15851 15851 YDL075W_4_322225_322987_INTRON_58_478 intron/exon 24.848473 116.576878 24.848473 92.728405 58.788439 1.769291929 0.019152 57 91 SH6307 6307 snR42 snR42 316 332 37.877356 121.78008 79.828718 1.902159155 0.019143 57 40 SH13072 13072 MT COX1 COX1ai3 25.359732 120.866656 25.359732 96.506924 60.933328 1.784854899 0.019134 112 88 SH6984 6984 snR60 snR60 1 20 243.974329 411.785362 327.8798455 2.515714722 0.019104 173 27 SH3747 3747 Val4 5' flank 28.768566 108.33762 68.553093 1.836027054 0.019063 20 72 SH19543 19543 CBP1 1.2 24.755384 92.060317 58.4078505 1.766471224 0.019029 199 5 SH21052 21052 YMR143W spliced 24.138108 87.603959 55.8710335 1.747186705 0.019005 196 5 SH1771 1771 Leu7 3' flank 26.46862 101.99189 64.230255 1.807739646 0.018997 206 81 SH7651 7651 snoRNA cluster1 5' 24.239775 111.58296 24.239775 88.343185 56.29148 1.750442667 0.018987 35 41 SH13186 13186 MT COX1 Exon4 24.46424 113.418785 24.46424 89.954545 57.2093925 1.757467336 0.01898 38 86 SH13471 13471 MT COX1 intronic 26.838728 129.642113 26.838728 103.803385 65.3210565 1.8150532 0.018928 206 83 SH14609 14609 MT 21S rRNA Sce1 endonuc 26.502635 127.666014 26.502635 102.163379 64.333007 1.808433851 0.018925 28 43 SH20887 20887 YLR275W spliced 22.806758 78.230472 50.518615 1.703451436 0.018909 208 2 SH7545 7545 snR79 snR79 66 82 45.731724 132.993815 89.3627695 1.95115662 0.018906 121 32 SH14875 14875 MT tRNA Ala 5' 24.618449 114.695155 24.618449 91.076706 57.8475775 1.762285177 0.018901 2 34 SH19969 19969 YBL072C spliced 54.119091 144.795407 99.457249 1.997636442 0.018896 214 76 SH19578 19578 AEP2/ATP13 0.6 60.045682 153.116103 106.5808925 2.027679353 0.018887 9 53 SH4039 4039 SRP RNA SRP RNA 86 102 25.46531 97.139562 61.302436 1.787477733 0.018875 174 8 SH9173 9173 snR7 U5 RNA U5 136 150 29.298998 109.406184 69.352591 1.841062691 0.018869 17 34 SH11198 11198 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2876 2894 28.854368 108.52166 68.688014 1.83688096 0.018848 201 30 SH1518 1518 Leu3 tRNA-intron/exon 61 76 73.278561 171.911825 122.595193 2.088473442 0.018847 8 25 SH20268 20268 YDR424C spliced 26.06033 100.022324 63.041327 1.799625346 0.018808 58 52 SH14714 14714 MT tRNA cys; tRNA his 5' 25.052133 118.311478 25.052133 94.259345 59.655739 1.77565223 0.018787 128 99 SH5538 5538 snR33 5' 23.552618 83.388519 53.4705685 1.728114802 0.018765 199 30 SH12343 12343 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 34.287684 150.014826 34.287684 116.727142 75.507413 1.877989591 0.018735 45 52 SH18329 18329 YML094W_13_82275_82849_INTRON_17_99 intron 33.183921 147.347762 33.183921 115.163841 74.173881 1.870251003 0.018731 106 45 SH9013 9013 snR17a / U3a U3a 351 363 28.220176 107.25451 67.737343 1.830828157 0.018718 94 89 SH2366 2366 Phe3 3' flank 26.17679 100.596534 63.386662 1.801997882 0.018695 68 57 SH18343 18343 YML124C_13_23684_22049_INTRON_26_323 intron 24.880105 116.884005 24.880105 93.0039 58.9420025 1.770424887 0.018691 198 32 SH15367 15367 YBL027W_2_168385_169338_INTRON_3_386 intron 24.327718 112.33297 24.327718 89.005252 56.666485 1.753326274 0.018628 4 32 SH9907 9907 RUF5-1 RUF5-1 341 361 23.674948 84.278048 53.976498 1.732204704 0.018618 160 88 SH19317 19317 YPL198W_16_173151_174701_INTRON_12_420 intron 25.05989 118.397735 25.05989 94.337845 59.6988675 1.775966093 0.018567 106 14 SH4685 4685 snR4 5' 23.93791 86.183749 55.0608295 1.74084275 0.018558 137 45 SH6328 6328 snR42 3' 53.171396 143.490257 98.3308265 1.99268969 0.018536 43 23 SH15831 15831 YDL075W_4_322225_322987_INTRON_58_478 intron 27.43733 132.111664 27.43733 105.674334 66.555832 1.823186117 0.018506 31 3 SH5460 5460 snR32 5' 24.757589 92.126974 58.4422815 1.766727162 0.018494 132 65 SH3082 3082 Ser3 3' flank 24.753046 92.094587 58.4238165 1.766589924 0.018486 26 4 SH564 564 Cys1 3' flank 29.527923 109.882426 69.7051745 1.843265019 0.018481 86 57 SH2746 2746 Pro5 3' flank 22.352535 75.313391 48.832963 1.688713076 0.018468 134 100 SH2205 2205 Phe1 5' flank 22.149548 74.012128 48.080838 1.681972028 0.018462 81 13 SH15144 15144 MT tRNA Thr1 reverse complement 5' / tRNA 23.900917 108.824782 23.900917 85.923865 54.912391 1.739670354 0.018461 59 5 SH536 536 Cys1 5' flank 25.577213 97.711572 61.6443925 1.789893577 0.018455 23 72 SH10715 10715 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 461 474 296.902034 486.042098 391.472066 2.592700778 0.018435 97 88 SH809 809 Glu1 61-72 + 3' flank 61 73 25.981874 99.672731 62.8273025 1.798148414 0.018414 123 90 SH21659 21659 copy of SH9189 22.842738 78.505858 50.674298 1.704787741 0.018412 204 97 SH2679 2679 Pro4 tRNA-intron/exon 61 75 1156.732419 1602.761246 1379.746833 3.139799406 0.018404 189 47 SH15702 15702 YBR220C_2_663261_662457_INTRON_302_722 intron 30.477822 140.838093 30.477822 111.360271 70.9190465 1.850762888 0.018403 162 30 SH4736 4736 snR4 3' 28.945805 108.730621 68.838213 1.837829588 0.018392 40 99 SH12348 12348 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 33.121716 147.215987 33.121716 115.094271 74.1079935 1.869865055 0.018386 187 22 SH14713 14713 MT tRNA cys; tRNA his 5' 23.578411 106.185525 23.578411 83.607114 53.5927625 1.729106144 0.018375 96 55 SH3927 3927 RNase MRP RNaseMRP 51 73 23.752307 84.85812 54.3052135 1.734841525 0.018356 207 65 SH386 386 Asn1 11-26 11 26 56.459787 148.142351 102.301069 2.009880172 0.018309 203 86 SH2822 2822 Pro7 5' flank 24.611962 91.08568 57.848821 1.762294512 0.018302 132 23 SH4175 4175 telomerase RNA 5' 25.923558 99.399095 62.6613265 1.796999584 0.018298 142 22 SH11749 11749 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5631 5644 57.006397 148.905277 102.955837 2.012650974 0.018295 82 70 SH8161 8161 snoRNA cluster 3; snR70 100.340623 310.18535 100.340623 210.844727 155.592675 2.191989147 0.018268 18 8 SH5462 5462 snR32 5' 23.581013 83.63608 53.6085465 1.729234032 0.018256 67 67 SH9339 9339 RUF1 RUF1 271 287 25.56129 97.650008 61.605649 1.789620537 0.018255 133 11 SH1680 1680 Leu6 5' flank 24.006166 86.708011 55.3570885 1.74317324 0.018255 27 35 SH13022 13022 MT COX1 COX1ai2 25.158568 119.25757 25.158568 95.099002 60.128785 1.779082428 0.018243 57 17 SH2497 2497 Pro1 5' flank 28.939895 108.728324 68.8341095 1.837803698 0.018228 107 40 SH21697 21697 copy of SH10662 146.740707 276.397097 211.568902 2.325451832 0.018228 28 94 SH3180 3180 Ser5 tRNA 21 35 62.418812 156.529911 109.4743615 2.039312421 0.018212 49 90 SH1006 1006 Gly2 tRNA 21 38 28.090893 107.021871 67.556382 1.829666383 0.01821 13 76 SH18397 18397 YMR125W_13_517538_520445_INTRON_26_347 intron 29.254486 137.61072 29.254486 109.356234 69.30536 1.840766824 0.018207 42 44 SH8736 8736 LSR1 / U2 RNA U2 321 340 22.570008 76.740433 49.6552205 1.695964915 0.018203 22 42 SH11955 11955 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6661 6674 145.373991 274.496048 209.9350195 2.32208489 0.0182 22 48 SH7029 7029 snR62 5' 25.282126 96.021078 60.651602 1.782842276 0.018198 39 37 SH12713 12713 MT ORF 8 (hypothetical) ORF8 22.932589 101.046825 22.932589 79.114236 51.0234125 1.707769501 0.018197 65 30 SH20877 20877 YLR185W spliced 26.106723 100.300362 63.2035425 1.800741421 0.018136 31 5 SH14901 14901 MT tRNA Ile tRNA / 3' 22.602711 98.561552 22.602711 76.958841 49.780776 1.697061662 0.018129 78 14 SH20880 20880 YLR211C spliced 168.615804 307.039545 237.8276745 2.376262389 0.01812 153 49 SH18451 18451 YMR143W_13_551927_552902_INTRON_25_568 5' exon 58.090301 207.51012 58.090301 150.419819 104.25506 2.018097143 0.01812 6 102 SH2949 2949 Ser1 5' flank 26.678724 103.088888 64.883806 1.812136317 0.018099 173 15 SH18136 18136 YLR406C_12_931752_931062_INTRON_58_406 intron 40.621223 165.399242 40.621223 125.778019 83.199621 1.920121348 0.018091 166 102 SH8507 8507 snR19 / U1 RNA U1 31 52 23.328976 81.858117 52.5935465 1.720932457 0.018062 32 79 SH17370 17370 YIL052C_9_257061_256224_INTRON_38_509 intron 25.780693 123.509453 25.780693 98.72876 62.2547265 1.79417233 0.01802 4 33 SH19346 19346 YPL249C-A_16_76239_75699_INTRON_17_254 intron 25.82935 123.794979 25.82935 98.965629 62.3974895 1.795167117 0.018003 148 82 SH15152 15152 MT tRNA Thr1 reverse complement 3' 23.248475 103.547055 23.248475 81.29858 52.2735275 1.718281808 0.017948 196 67 SH9691 9691 RUF4 RUF4 231 250 25.141767 95.003931 60.072849 1.778678229 0.017941 90 75 SH2761 2761 Pro5 3' flank 24.776914 92.323427 58.5501705 1.767528164 0.017908 191 7 SH2126 2126 Met1 tRNA 16 30 631.91269 937.424273 784.6684815 2.894686208 0.017884 172 72 SH14605 14605 MT 21S rRNA Sce1 endonuc 28.030731 133.950126 28.030731 106.919395 67.475063 1.829143299 0.017868 193 88 SH259 259 Arg3 3' flank 32.750172 114.600319 73.6752455 1.867321592 0.017839 145 21 SH18712 18712 YNL130C_14_381156_379555_INTRON_30_470 intron 24.981756 117.814695 24.981756 93.832939 59.4073475 1.773840162 0.017831 159 88 SH20601 20601 YHR041C spliced 25.225195 95.634882 60.4300385 1.781252871 0.017819 91 15 SH518 518 Asp2 3' flank 27.748297 106.351833 67.050065 1.826399203 0.017753 85 86 SH15508 15508 YBR048W_2_332790_333771_INTRON_46_556 intron 25.74261 123.308772 25.74261 98.566162 62.154386 1.793471781 0.01774 72 48 SH16774 16774 YGL103W_7_310965_311925_INTRON_50_560 intron 25.573133 122.32087 25.573133 97.747737 61.660435 1.790006584 0.017726 145 33 SH21209 21209 YOR096W spliced 26.701995 103.233019 64.967507 1.812696202 0.017722 29 31 SH3578 3578 Tyr2 3' flank 24.910233 93.31815 59.1141915 1.771691754 0.017715 48 37 SH4228 4228 telomerase RNA telomerase 176 193 22.717814 77.742258 50.230036 1.700963489 0.017712 146 37 SH12544 12544 MT_ORF6 + ORF7 (hypothetical) ORF6/7 / 3' 25.330192 120.758808 25.330192 96.428616 60.879404 1.784470392 0.017699 86 103 SH14717 14717 MT tRNA cys; tRNA his 5' 25.003277 118.009537 25.003277 94.00626 59.5047685 1.77455177 0.017678 100 33 SH2753 2753 Pro5 3' flank 25.763597 98.673264 62.2184305 1.793919052 0.017668 43 61 SH1955 1955 Lys2 5' flank 23.281246 81.556939 52.4190925 1.719489498 0.017633 70 101 SH12184 12184 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7806 7823 28.900133 108.684188 68.7921605 1.837538949 0.017616 185 52 SH7972 7972 snoRNA cluster 2 5'/snR57 37.926383 158.872238 37.926383 121.945855 79.936119 1.902743059 0.017601 50 66 SH18117 18117 YLR367W_12_855877_857316_INTRON_698_1180 3' exon 29.078225 137.120945 29.078225 109.04272 69.0604725 1.839229545 0.017564 194 54 SH18969 18969 YOR096W_15_505793_506766_INTRON_145_545 intron 26.103132 125.431028 26.103132 100.327896 63.215514 1.800823674 0.017564 68 42 SH10022 10022 RUF6 5' 27.095745 105.025447 66.060596 1.819942488 0.017563 67 11 SH14428 14428 MT 21S rRNA 21S rRNA3 23.74492 107.620688 23.74492 84.875768 54.310344 1.734882554 0.017558 204 76 SH7819 7819 snoRNA cluster1 intergenic 23.857832 108.555523 23.857832 85.697691 54.7777615 1.738604281 0.017499 129 59 SH1621 1621 Leu5 5' flank 22.648447 77.312469 49.980458 1.698800232 0.017414 8 29 SH3224 3224 Thr1 5' flank 28.12978 107.146545 67.6381625 1.830191801 0.017402 204 72 SH18141 18141 YLR406C_12_931752_931062_INTRON_58_406 intron 30.492951 140.929753 30.492951 111.436802 70.9648765 1.851043451 0.017387 40 91 SH18512 18512 YMR201C_13_667043_665844_INTRON_28_111 exon/intron 28.632525 135.794545 28.632525 108.16202 68.3972725 1.835038784 0.017372 39 7 SH4265 4265 telomerase RNA telomerase 361 378 24.741425 92.116074 58.4287495 1.766626592 0.017361 204 22 SH17182 17182 YHR021C_8_148660_147862_INTRON_4_553 intron 26.997977 130.709457 26.997977 104.71148 65.8547285 1.818586964 0.017356 108 60 SH1256 1256 Ile2 5' flank 23.160256 80.727441 51.9438485 1.715534123 0.017351 56 16 SH6978 6978 snR60 5' 31.195668 112.447573 71.8216205 1.8562552 0.017328 76 96 SH7486 7486 snR71 snR71 46 66 24.311121 89.006369 56.658745 1.753266951 0.017312 146 84 SH14440 14440 MT 21S rRNA 21S rRNA3 67.206597 229.604008 67.206597 163.397411 115.302004 2.061836856 0.017295 55 40 SH6695 6695 snR49 snR49 1 18 25.736713 98.573003 62.154858 1.793475079 0.017282 135 71 SH16778 16778 YGL103W_7_310965_311925_INTRON_50_560 intron 26.939078 130.369777 26.939078 104.430699 65.6848885 1.817465467 0.017261 161 78 SH21040 21040 YMR133W spliced 24.711985 91.912469 58.312227 1.765759628 0.017243 165 16 SH7017 7017 snR60 3' 27.958595 106.810714 67.3846545 1.828561006 0.017203 58 53 SH13412 13412 MT COX1 intronic 24.924161 117.394591 24.924161 93.47043 59.1972955 1.772301866 0.017194 129 33 SH15623 15623 YBR181C_2_592732_591670_INTRON_7_358 intron 27.102115 131.162188 27.102115 105.060073 66.081094 1.820077224 0.017178 50 55 SH14517 14517 MT 21S rRNA 21S rRNA3 687.111579 1695.714269 687.111579 1009.60269 848.3571345 2.928578717 0.01716 119 44 SH15742 15742 YCR028C-A_3_173432_172942_INTRON_243_325 intron 22.650956 99.00088 22.650956 77.349924 50.00044 1.698973826 0.017144 177 14 SH10470 10470 RUF8 RUF8 276 295 52.108151 142.120534 97.1143425 1.987283374 0.017115 165 26 SH10694 10694 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 356 373 77.156925 177.605039 127.380982 2.105104593 0.017096 92 41 SH14759 14759 MT ORF11; tRNA Leu; tRNA Gln ORF11 30.854017 141.826741 30.854017 111.972724 71.4133705 1.853779531 0.017082 92 61 SH8605 8605 snR19 / U1 RNA U1 521 536 140.853241 268.340346 204.5967935 2.310898823 0.017079 195 78 SH21161 21161 YNL301C spliced 25.448874 97.198445 61.3236595 1.787628064 0.017062 130 81 SH21308 21308 YPL241C spliced 27.070588 105.001988 66.036288 1.819782653 0.017054 90 63 SH6679 6679 snR49 5' 21.87761 72.399238 47.138424 1.673375058 0.01704 150 31 SH21487 21487 copy of SH1853 5935.122326 6791.195627 6363.158977 3.803672774 0.017035 98 73 SH14495 14495 MT 21S rRNA 21S rRNA3 30.266512 140.395797 30.266512 111.129285 70.6978985 1.849406505 0.017012 81 46 SH18827 18827 YNL302C_14_62942_61957_INTRON_21_571 intron 27.465408 132.281514 27.465408 105.816106 66.640757 1.823739922 0.017004 30 84 SH3646 3646 Val2 5' flank 23.61431 83.985272 53.799791 1.730780589 0.016996 212 81 SH17928 17928 YLR078C_12_286560_285737_INTRON_4_92 3' exon 28.146784 134.350844 28.146784 107.20406 67.675422 1.830430973 0.016996 161 86 SH20080 20080 YCR031C spliced 24.920429 93.462224 59.1913265 1.772258073 0.016994 203 88 SH1046 1046 Gly3 5' flank 26.567504 102.636486 64.601995 1.81024593 0.016975 102 74 SH21362 21362 Ile2_3 spliced 26.086228 100.294376 63.190302 1.800650431 0.016947 186 57 SH7618 7618 snR189 snR189 161 178 24.769236 92.367193 58.5682145 1.767661984 0.016854 212 48 SH2594 2594 Pro3 5' flank 66.849266 162.929699 114.8894825 2.060280273 0.016832 91 73 SH11964 11964 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6706 6724 24.976689 93.892189 59.434439 1.774038168 0.016828 36 59 SH11901 11901 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6391 6406 134.432022 259.403957 196.9179895 2.294285393 0.016797 57 15 SH21547 21547 copy of SH4256 24.975152 93.885387 59.4302695 1.7740077 0.016781 78 73 SH3283 3283 Thr2 tRNA 16 30 49.999254 139.173139 94.5861965 1.975827762 0.016765 192 104 SH4665 4665 snR3 3' 23.194894 81.024305 52.1095995 1.716917735 0.016726 70 2 SH11303 11303 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3401 3418 407.55648 639.661724 523.609102 2.719007187 0.016715 10 53 SH5397 5397 snR31 snR31 51 66 27.508744 105.922563 66.7156535 1.824227744 0.016689 62 79 SH13696 13696 MT ORF 5 (hypothetical) 3' 29.324586 137.908557 29.324586 109.583971 69.4542785 1.841699004 0.016685 72 19 SH12870 12870 MT COX1 COX1ai1 24.980837 117.921387 24.980837 93.94055 59.4606935 1.77422997 0.016644 157 52 SH11861 11861 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6191 6206 96.857741 206.037512 151.4476265 2.180262471 0.016644 114 97 SH3147 3147 Ser4 3' flank 23.696849 84.610606 54.1537275 1.733628355 0.016638 209 42 SH18458 18458 YMR143W_13_551927_552902_INTRON_25_568 intron 24.513941 114.045338 24.513941 90.531397 57.522669 1.759839029 0.016627 9 61 SH19427 19427 YPR132W_16_794960_795762_INTRON_66_430 intron 26.380038 127.130286 26.380038 101.750248 64.065143 1.8066218 0.01662 89 79 SH4365 4365 telomerase RNA telomerase 861 879 33.835062 116.209881 75.0224715 1.875191367 0.016619 97 80 SH1964 1964 Lys2 tRNA 21 35 28.344735 107.626159 67.985447 1.832415957 0.016612 70 40 SH9458 9458 RUF2 RUF2 131 150 25.195875 95.535661 60.365768 1.78079073 0.016608 70 66 SH12020 12020 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6986 7003 173.303981 313.907177 243.605579 2.38668723 0.016542 208 102 SH15615 15615 YBR181C_2_592732_591670_INTRON_7_358 intron 27.989938 133.902504 27.989938 106.912566 67.451252 1.828990015 0.016529 83 60 SH14788 14788 "MT tRNAs (Lys, Arg1, Gly)" 5' 24.379869 112.952759 24.379869 89.57289 56.9763795 1.755694849 0.016523 32 7 SH7647 7647 snoRNA cluster1 5' 22.434773 97.427973 22.434773 75.9932 49.2139865 1.692088546 0.016518 35 21 SH21475 21475 copy of SH1442 27.466116 105.846149 66.6561325 1.823840112 0.016495 110 49 SH1515 1515 Leu3 tRNA-intron 46 62 25.360936 96.78007 61.070503 1.785831497 0.01647 161 19 SH21422 21422 Trp1 spliced 26.058868 100.201567 63.1302175 1.800237286 0.016436 184 31 SH970 970 Gly1 3' flank 24.034151 87.078205 55.556178 1.744732361 0.016431 96 84 SH10636 10636 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 66 83 28.278037 107.502666 67.8903515 1.831808057 0.016415 97 85 SH15891 15891 YDL082W_4_308423_309387_INTRON_5_369 intron 22.456858 97.601085 22.456858 76.144227 49.3005425 1.692851698 0.016414 144 99 SH20483 20483 YGL226C-A spliced 25.487291 97.434939 61.461115 1.788600435 0.016395 93 93 SH12187 12187 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7821 7838 23.175431 80.917109 52.04627 1.71638961 0.016372 159 63 SH8131 8131 snoRNA cluster 3; snR41 30.800326 141.734974 30.800326 111.934648 71.367487 1.853500405 0.016363 103 75 SH18766 18766 YNL246W_14_185459_186348_INTRON_33_127 exon/intron 29.754941 139.17312 29.754941 110.418179 70.08656 1.845634744 0.016361 54 40 SH6391 6391 snR43 196-209 3' 196 25.927832 99.571486 62.749659 1.79761137 0.016355 203 63 SH1556 1556 Leu4 5' flank 24.053946 87.231143 55.6425445 1.745406982 0.016342 41 42 SH14492 14492 MT 21S rRNA 21S rRNA3 24.743868 115.974377 24.743868 92.230509 58.4871885 1.767060745 0.01634 107 19 SH13098 13098 MT COX1 COX1ai3 27.081025 131.144485 27.081025 105.06346 66.0722425 1.820019047 0.016337 164 17 SH681 681 Gln3 5' flank 23.900887 86.115975 55.008431 1.740429258 0.016324 46 100 SH17025 17025 YGR148C_7_788173_787307_INTRON_1_392 intron/exon 23.738354 107.676374 23.738354 84.93802 54.338187 1.735105144 0.016323 28 19 SH12529 12529 MT_ORF6 + ORF7 (hypothetical) ORF6/7 23.511532 105.819478 23.511532 83.307946 53.409739 1.727620456 0.01632 127 20 SH4527 4527 U3b (snR17b) U3b 191 205 46.414443 134.143024 90.2787335 1.955585458 0.016319 90 19 SH9534 9534 RUF3 RUF3 56 77 23.887082 86.018366 54.952724 1.739989225 0.016293 45 88 SH9905 9905 RUF5-1 RUF5-1 331 348 23.179077 80.94962 52.0643485 1.716540438 0.016291 173 65 SH7698 7698 snoRNA cluster1 intergenic 22.036783 94.493831 22.036783 73.457048 47.7469155 1.678945321 0.016255 68 78 SH7272 7272 snR65 3' 24.190034 88.238443 56.2142385 1.749846332 0.016218 52 70 SH13661 13661 MT ATP6 ATP6 22.324777 96.6334 22.324777 75.308623 48.8167 1.688568418 0.016177 31 39 SH12751 12751 MT COX1 COX1ai1 24.726443 115.845116 24.726443 92.118673 58.422558 1.766580568 0.016176 97 25 SH8488 8488 snR19 / U1 RNA 5' 26.206427 100.940918 63.5736725 1.8032773 0.016162 34 35 SH12045 12045 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7111 7128 27.006966 104.855985 65.9314755 1.819092795 0.016135 13 43 SH5322 5322 snR30 snR30 461 475 63.817067 158.660286 111.2386765 2.046255813 0.016134 17 22 SH15952 15952 YDL130W_4_229906_230527_INTRON_115_415 5' exon 37.241547 157.277028 37.241547 121.035481 79.138514 1.898387891 0.016132 93 54 SH9596 9596 RUF3 RUF3 366 387 21.937174 72.836761 47.3869675 1.675658917 0.016095 175 61 SH21003 21003 YML094W spliced 32.333344 114.118592 73.225968 1.864665121 0.016086 37 8 SH7010 7010 snR60 3' 24.516637 90.602932 57.5597845 1.760119159 0.016067 30 53 SH16489 16489 YER102W_5_362729_363698_INTRON_1_360 3' exon 24.709416 115.715826 24.709416 92.00641 58.357913 1.766099752 0.016049 59 75 SH15745 15745 YCR028C-A_3_173432_172942_INTRON_243_325 3' exon 23.331089 104.37732 23.331089 82.046231 52.68866 1.721717154 0.016042 100 7 SH16353 16353 YDR500C_4_1450856_1450201_INTRON_8_396 intron 24.821013 116.64532 24.821013 92.824307 58.82266 1.76954466 0.016032 19 102 SH16829 16829 YGL178W_7_167356_170575_INTRON_4_643 intron 24.318177 112.49282 24.318177 89.174643 56.74641 1.753938392 0.016026 37 31 SH3100 3100 Ser4 5' flank 26.387045 101.833512 64.1102785 1.806927663 0.016006 56 31 SH3254 3254 Thr1 3' flank 23.799387 85.408399 54.603893 1.737223607 0.015999 6 43 SH18006 18006 YLR287C-A_12_713158_712537_INTRON_4_433 intron 26.109974 125.596113 26.109974 100.486139 63.2980565 1.801390376 0.015978 142 3 SH1949 1949 Lys2 5' flank 23.446504 82.875562 53.161033 1.725593411 0.01595 152 45 SH4155 4155 SRP RNA 666-675 + 3' 666 24.998562 94.138374 59.568468 1.775016431 0.015948 75 29 SH15693 15693 YBR220C_2_663261_662457_INTRON_302_722 5' exon 27.614722 132.796896 27.614722 106.182174 66.898448 1.825416043 0.015928 164 28 SH21849 21849 copy of SH17599 26.821688 103.964752 65.39322 1.815532723 0.015925 181 11 SH7521 7521 snR79 5' 23.504108 83.290782 53.397445 1.727520477 0.015908 9 59 SH4794 4794 snR5 snR5 141 162 22.567824 76.905284 49.736554 1.696675692 0.015893 131 82 SH18508 18508 YMR194W_13_651144_651909_INTRON_17_479 3' exon 25.381822 121.346725 25.381822 96.964903 61.1733625 1.786562353 0.015878 187 21 SH18109 18109 YLR367W_12_855877_857316_INTRON_698_1180 intron 23.531156 106.022493 23.531156 83.491337 53.5112465 1.728445068 0.015828 207 86 SH67 67 Ala2 5' flank 24.583516 91.110835 57.8471755 1.762282159 0.015823 121 95 SH14766 14766 MT ORF11; tRNA Leu; tRNA Gln ORF11 24.03061 110.141246 24.03061 87.110636 55.570623 1.744845266 0.015791 102 95 SH11693 11693 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5351 5369 69.048736 166.14428 117.596508 2.070394426 0.015767 65 97 SH14402 14402 MT 21S rRNA 21S rRNA3 42.998402 171.325105 42.998402 129.326703 86.1625525 1.935318556 0.015762 167 89 SH7437 7437 snR69 snR69 86 100 29.935975 110.716307 70.326141 1.847116787 0.015741 47 89 SH14190 14190 MT COB Exon6 22.78997 100.161831 22.78997 78.371861 50.5809155 1.703986686 0.015725 194 24 SH5304 5304 snR30 snR30 371 383 28.208143 107.4009 67.8045215 1.831258655 0.015721 13 100 SH21497 21497 copy of SH2290 37.705207 121.739227 79.722217 1.901579368 0.01572 209 36 SH3966 3966 RNase MRP RNaseMRP 246 264 26.297928 101.424379 63.8611535 1.805236759 0.015687 102 73 SH4147 4147 SRP RNA SRP RNA 626 638 1047.430416 1469.064099 1258.247258 3.099765992 0.01568 115 45 SH3401 3401 Thr4 3' flank 22.222615 74.689787 48.456201 1.685349362 0.015667 99 88 SH4648 4648 snR3 snR3 156 172 29.358852 109.711354 69.535103 1.842204102 0.015666 144 88 SH9672 9672 RUF4 RUF4 136 153 24.192533 88.309483 56.251008 1.750130309 0.015631 53 81 SH7556 7556 snR79 3' 24.895185 93.41209 59.1536375 1.771981456 0.01558 72 56 SH10912 10912 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1446 1459 59.552713 152.686691 106.119702 2.025796022 0.015549 113 55 SH11214 11214 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2956 2969 155.683958 289.386264 222.535111 2.347398543 0.015527 104 54 SH1360 1360 Ile3 3' flank 23.844623 85.778928 54.8117755 1.73887387 0.015525 90 12 SH11176 11176 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2766 2782 578.881052 869.33881 724.109931 2.859804504 0.01551 178 52 SH2460 2460 Phe5 tRNA 71 85 47.733985 136.057786 91.8958855 1.963296067 0.015498 182 89 SH17220 17220 YHR041C_8_189855_189122_INTRON_15_115 intron 24.428306 113.446126 24.428306 90.01782 57.223063 1.757571101 0.015486 125 24 SH19643 19643 RNA14 2.2 26.553107 102.686599 64.619853 1.810365966 0.015479 200 33 SH4107 4107 SRP RNA SRP RNA 426 438 31.074969 112.379018 71.7269935 1.855682627 0.015421 87 87 SH9174 9174 snR7 U5 RNA U5 141 155 23.950978 86.56249 55.256734 1.742385212 0.01542 72 74 SH5240 5240 snR30 snR30 51 65 52.064499 142.188725 97.126612 1.98733824 0.015381 129 5 SH14745 14745 MT ORF11; tRNA Leu; tRNA Gln 5' 25.115085 119.17561 25.115085 95.060525 60.087805 1.77878634 0.015332 104 84 SH6022 6022 snR37 snR37 26 50 21.790804 71.985241 46.8880225 1.671061917 0.015331 70 61 SH8648 8648 snR19 / U1 RNA 3' 22.620247 77.292707 49.956477 1.698591804 0.015308 205 101 SH14852 14852 MT tRNA Ser2; tRNA Arg2 5' 23.81977 108.438892 23.81977 85.619122 54.719446 1.738141692 0.015295 73 69 SH3801 3801 RNaseP 5' flank 323.755902 524.613667 424.1847845 2.627555086 0.015292 4 58 SH17698 17698 YKL006W_11_431544_432358_INTRON_130_527 3' exon 31.474143 143.428478 31.474143 112.954335 72.214239 1.858622839 0.015289 174 53 SH15850 15850 YDL075W_4_322225_322987_INTRON_58_478 intron 22.630583 98.993123 22.630583 77.36254 49.9965615 1.698940137 0.015278 78 6 SH4375 4375 telomerase RNA telomerase 911 927 25.038371 94.501217 59.769794 1.776481759 0.015239 36 86 SH3046 3046 Ser3 5' flank 25.139258 95.251474 60.195366 1.779563059 0.015214 180 102 SH9811 9811 RUF4 3' 24.628121 91.494578 58.0613495 1.763887126 0.01519 8 79 SH15136 15136 MT tRNA Phe 3' 23.085265 102.472614 23.085265 80.387349 51.736307 1.713795425 0.015129 134 97 SH240 240 Arg3 56-68 56 68 68.99967 166.136127 117.5678985 2.070288755 0.015099 95 52 SH15714 15714 YBR220C_2_663261_662457_INTRON_302_722 intron 22.010168 94.383505 22.010168 73.373337 47.6917525 1.678443281 0.015096 199 70 SH2588 2588 Pro2 3' flank 22.569371 76.978839 49.774105 1.69700346 0.015076 169 89 SH6156 6156 snR39B 3' 23.811694 85.58124 54.696467 1.737959275 0.015064 94 49 SH17873 17873 YLL050C_12_40413_39803_INTRON_15_193 3' exon 24.063678 110.484509 24.063678 87.420831 55.7422545 1.74618453 0.015047 125 47 SH1786 1786 Leu8 5' flank 31.613599 113.165848 72.3897235 1.859676918 0.015032 144 35 SH15267 15267 MT 9S rRNA 9S 23.229115 103.64015 23.229115 81.411035 52.320075 1.718668358 0.015019 174 39 SH5635 5635 snR34 snR34 96 113 25.105986 95.023568 60.064777 1.778619869 0.015019 196 101 SH14255 14255 MT VAR1 includes 5’ processing site 5' 23.06475 102.317293 23.06475 80.252543 51.6586465 1.713143023 0.015018 138 61 SH12212 12212 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.464277 140.987417 30.464277 111.52314 70.9937085 1.851219863 0.015017 123 63 SH628 628 Gln2 5' flank 25.102703 95.000148 60.0514255 1.778523321 0.015009 172 84 SH13680 13680 MT ORF 5 (hypothetical) 5' 24.210789 111.708012 24.210789 88.497223 56.354006 1.750924794 0.015002 50 5 SH6264 6264 snR42 snR42 101 116 31.939328 113.62738 72.783354 1.862032065 0.014989 38 47 SH3707 3707 Val3 tRNA 16 30 26.241745 101.206781 63.724263 1.804304821 0.014979 113 17 SH15327 15327 YAL003W_1_142172_143158_INTRON_81_446 intron 24.997977 118.225659 24.997977 94.227682 59.6128295 1.775339736 0.014979 143 77 SH15253 15253 MT tRNA fMet 3' 24.879018 117.23307 24.879018 93.354052 59.116535 1.771708971 0.014945 92 3 SH198 198 Arg2 3' flank 24.138857 87.982876 56.0608665 1.748659806 0.01494 84 16 SH10101 10101 RUF6 RUF6 351 370 23.850969 85.877762 54.8643655 1.739290361 0.014938 100 17 SH18059 18059 YLR333C_12_796335_795573_INTRON_1_423 intron/exon 25.852244 124.168643 25.852244 99.316399 62.5843215 1.796465548 0.014921 166 59 SH20563 20563 YHR001W-A spliced 60.473778 154.058264 107.266021 2.030462171 0.014891 20 40 SH801 801 Glu1 tRNA 21 37 34.097569 116.679493 75.388531 1.877305281 0.014887 68 22 SH12411 12411 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 22.371291 97.080444 22.371291 75.709153 49.040222 1.690552428 0.014862 103 64 SH2922 2922 Pro8 3' flank 22.84009 78.770209 50.8051495 1.705907734 0.014861 70 3 SH18252 18252 YML034W_13_209525_212155_INTRON_1921_2046 intron 22.876832 100.890101 22.876832 79.013269 50.9450505 1.707101997 0.014852 150 51 SH20486 20486 YGL232W spliced 45.338997 132.710834 89.0249155 1.94951157 0.014841 56 66 SH5816 5816 snR35 snR35 266 282 28.747427 108.538702 68.6430645 1.836596664 0.014833 209 39 SH21906 21906 copy of SH19401 26.576854 102.8552 64.716027 1.811011848 0.014828 137 52 SH6999 6999 snR60 snR60 76 92 24.313752 89.252852 56.783302 1.754220644 0.014823 61 69 SH6666 6666 snR48 3' 24.645529 91.658013 58.151771 1.764562946 0.0148 169 88 SH18001 18001 YLR287C-A_12_713158_712537_INTRON_4_433 intron 31.963019 144.634378 31.963019 113.671359 72.817189 1.86223391 0.014795 130 52 SH14261 14261 MT VAR1 includes 5’ processing site 5' 25.040523 118.602988 25.040523 94.562465 59.801494 1.776712034 0.014771 60 102 SH12714 12714 MT ORF 8 (hypothetical) ORF8 / 3' 24.001155 109.991153 24.001155 86.989998 55.4955765 1.744258367 0.014749 41 5 SH18807 18807 YNL301C_14_64561_63569_INTRON_113_544 intron/exon 269.805358 717.958909 269.805358 449.153551 359.4794545 2.555674074 0.014724 113 52 SH15406 15406 YBL059C-A_2_110500_110086_INTRON_35_119 5' exon 26.573419 128.420453 26.573419 102.847034 64.7102265 1.81097292 0.014721 162 45 SH9170 9170 snR7 U5 RNA U5 121 137 34.650095 117.465653 76.057874 1.881144182 0.014702 192 11 SH15387 15387 YBL040C_2_142830_142074_INTRON_23_119 5' exon 30.798825 141.822588 30.798825 112.023763 71.411294 1.853766903 0.014677 138 8 SH7170 7170 snR64 5' 76.29202 176.615642 126.453831 2.101931991 0.014675 180 28 SH18560 18560 YMR292W_13_854795_855293_INTRON_23_104 intron 24.349081 112.870292 24.349081 89.521211 56.935146 1.755380439 0.014671 143 102 SH13081 13081 MT COX1 COX1ai3 27.027988 131.075278 27.027988 105.04729 66.037639 1.819791538 0.014664 214 81 SH13256 13256 MT COX1 COX1-ai4 22.958412 101.5315 22.958412 79.573088 51.26575 1.709827315 0.014597 155 25 SH8824 8824 LSR1 / U2 RNA U2 761 782 22.768763 78.325951 50.547357 1.703698452 0.014542 159 61 SH12660 12660 MT_15S MT_15S 26.769039 129.589557 26.769039 103.820518 65.2947785 1.814878453 0.014529 106 63 SH2087 2087 Lys4 3' flank 22.9495 79.520598 51.235049 1.709567156 0.014516 58 39 SH19707 19707 Negative Control 29.074557 109.212474 69.1435155 1.839751457 0.014507 137 89 SH2048 2048 Lys4 5' flank 22.976405 79.699738 51.3380715 1.71043955 0.014505 15 47 SH4776 4776 snR5 snR5 51 70 25.276621 96.34475 60.8106855 1.783979899 0.014501 55 43 SH16685 16685 YGL030W_7_439087_439634_INTRON_4_233 intron 33.873594 149.261427 33.873594 116.387833 75.1307135 1.875817513 0.014451 178 17 SH5737 5737 snR34 3' 24.824332 93.000915 58.9126235 1.770208363 0.014434 185 46 SH16699 16699 YGL031C_7_438393_437938_INTRON_1_456 intron 25.786943 123.825367 25.786943 99.038424 62.4126835 1.795272856 0.014419 14 11 SH5028 5028 snR10 snR10 171 188 23.419342 82.814578 53.11696 1.725233211 0.014417 182 34 SH4022 4022 SRP RNA SRP RNA 1 17 28.262697 107.586106 67.9244015 1.83202582 0.01441 190 84 SH18842 18842 YNL312W_14_48286_49215_INTRON_8_115 5' exon 26.588769 128.537105 26.588769 102.948336 64.7685525 1.811364191 0.014397 3 34 SH6709 6709 snR49 snR49 71 88 23.622193 84.276451 53.949322 1.731985991 0.014332 123 92 SH15041 15041 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.516141 114.277173 24.516141 90.761032 57.6385865 1.760713322 0.014329 150 27 SH18876 18876 YNR053C_14_723108_721117_INTRON_811_1341 intron 27.318773 131.984751 27.318773 105.665978 66.4923755 1.822771849 0.014318 170 13 SH7845 7845 snoRNA cluster1 snR74 46.709658 180.410758 46.709658 134.7011 90.705379 1.957633042 0.014302 23 84 SH2143 2143 Met1 3' flank 24.849034 93.196237 59.0226355 1.771018598 0.01429 149 13 SH1424 1424 Leu1 3' flank 26.945326 104.705825 65.8255755 1.818394665 0.014281 118 84 SH17230 17230 YHR077C_8_255757_252375_INTRON_7_119 intron 25.988467 125.018178 25.988467 100.029711 63.009089 1.799403201 0.014266 13 54 SH12253 12253 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 22.89346 101.06757 22.89346 79.17411 51.033785 1.70785778 0.014213 113 28 SH402 402 Asn1 3' flank 20.867216 66.458926 43.663071 1.640114278 0.014208 142 91 SH7971 7971 snoRNA cluster 2 5'/snR57 31.200128 142.824038 31.200128 112.62391 71.912019 1.856801482 0.014204 152 72 SH13627 13627 MT ATP6 ATP6 22.761576 100.069444 22.761576 78.307868 50.534722 1.703589881 0.014173 162 104 SH17769 17769 YKL180W_11_109271_110131_INTRON_310_615 exon/intron 33.587608 148.586606 33.587608 115.998998 74.793303 1.873862713 0.014149 53 43 SH274 274 Arg4 5' flank 22.165792 74.439441 48.3026165 1.683970657 0.014145 98 4 SH20034 20034 YBR186W spliced 24.738379 92.399101 58.56874 1.767665881 0.014136 140 51 SH9123 9123 snR14 / U4 RNA 3' 38.706443 123.287771 80.997107 1.908469507 0.01413 89 55 SH3883 3883 RNaseP 3' 22.119709 74.146045 48.132877 1.682441821 0.014117 178 10 SH2604 2604 Pro3 5' flank 36.039295 119.420315 77.729805 1.890587578 0.014083 15 21 SH19933 19933 YBL026W spliced 35.704997 118.96503 77.3350135 1.888376166 0.014041 134 92 SH21557 21557 copy of SH4783 23.38425 82.599831 52.9920405 1.724210643 0.014006 84 33 SH16869 16869 YGL187C_7_150529_149708_INTRON_1_342 intron 24.138073 111.202216 24.138073 88.064143 56.101108 1.748971439 0.013994 194 7 SH15393 15393 YBL040C_2_142830_142074_INTRON_23_119 intron/exon 26.518565 128.15591 26.518565 102.637345 64.577955 1.810084288 0.013994 174 91 SH15273 15273 MT 9S rRNA 9S 23.949411 109.629831 23.949411 86.68042 55.3149155 1.742842253 0.013993 47 46 SH1547 1547 Leu4 5' flank 24.767057 92.625277 58.696167 1.768609742 0.013966 209 43 SH17355 17355 YIL052C_9_257061_256224_INTRON_38_509 5' exon 90.097436 285.663753 90.097436 196.566317 143.3318765 2.156342787 0.013941 205 20 SH7082 7082 snR63 5' 24.497013 90.658942 57.5779775 1.760256406 0.013934 154 30 SH9406 9406 RUF1 3' 23.141547 80.889083 52.015315 1.716131233 0.01388 128 18 SH12125 12125 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7511 7528 40.993472 126.589794 83.791633 1.923200654 0.013846 174 60 SH13499 13499 MT COX1 intronic 24.259356 112.210603 24.259356 88.951247 56.6053015 1.752857108 0.013843 7 70 SH3093 3093 Ser3 3' flank 26.670508 103.394123 65.0323155 1.813129218 0.013834 19 10 SH726 726 Gln4 5' flank 27.954019 106.994754 67.4743865 1.829138944 0.013796 212 33 SH8908 8908 LSR1 / U2 RNA 3' 23.494431 83.405834 53.4501325 1.727948786 0.013794 101 36 SH18963 18963 YOL127W_15_80347_81189_INTRON_14_427 intron 23.661799 107.271446 23.661799 84.609647 54.135723 1.733483941 0.013793 51 70 SH6095 6095 snR37 3' 22.640689 77.545411 50.09305 1.699777475 0.013784 196 85 SH6667 6667 snR48 3' 28.429848 107.960068 68.194958 1.833752266 0.013779 2 44 SH5618 5618 snR34 snR34 11 27 24.301304 89.260651 56.7809775 1.754202865 0.01376 46 58 SH14754 14754 MT ORF11; tRNA Leu; tRNA Gln ORF11 22.963487 101.6378 22.963487 79.674313 51.3189 1.710277339 0.013756 169 62 SH1116 1116 Gly4 tRNA 56 70 26.247364 101.331855 63.7896095 1.804749944 0.01375 12 87 SH38 38 Ala1 3' flank 25.632577 98.341503 61.98704 1.792300898 0.013748 213 80 SH21352 21352 YPR132W spliced 42.209934 128.341976 85.275955 1.930826592 0.013748 127 29 SH7045 7045 snR62 snR62 16 35 23.08129 80.475911 51.7786005 1.714150308 0.013744 139 58 SH5127 5127 snR11 snR11 236 252 24.610751 91.505705 58.058228 1.763863777 0.013723 115 93 SH19577 19577 AEP2/ATP13 0.6 27.294063 105.649269 66.471666 1.822636564 0.01371 178 35 SH17703 17703 YKL081W_11_282533_284097_INTRON_206_531 intron 23.404468 105.175718 23.404468 82.77125 53.087859 1.724995211 0.013692 2 50 SH20129 20129 YDL082W spliced 26.275501 101.475205 63.875353 1.805333313 0.013674 55 24 SH1872 1872 Leu9 101 + 3' flank 101 22.390624 75.92574 49.158182 1.691595813 0.013667 202 15 SH5762 5762 snR35 5' - 12 -4 12 35.391865 118.555848 76.9738565 1.886343246 0.013663 32 98 SH8884 8884 LSR1 / U2 RNA U2 1061 1073 32.737205 114.814614 73.7759095 1.867914572 0.013652 60 30 SH14616 14616 MT 21S rRNA Sce1 endonuc 23.085527 102.599985 23.085527 80.514458 51.7999925 1.714329697 0.013641 24 88 SH13432 13432 MT COX1 intronic 105.227633 322.723272 105.227633 218.495639 161.861636 2.209143926 0.013633 134 43 SH8388 8388 snoRNA cluster 5 snR190 210.617695 576.309484 210.617695 366.691789 288.654742 2.460378696 0.01362 200 46 SH869 869 Glu2 3' flank 24.440069 90.275996 57.3580325 1.758594246 0.013614 79 59 SH5291 5291 snR30 snR30 306 323 24.999062 94.369644 59.684353 1.77586049 0.013595 107 63 SH3026 3026 Ser2 3' flank 22.930767 79.472365 51.201566 1.709283244 0.01357 65 42 SH12006 12006 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6916 6939 22.986234 79.840463 51.4133485 1.71107589 0.013567 116 89 SH19176 19176 YPL079W_16_406631_407534_INTRON_12_432 intron 29.26314 137.906551 29.26314 109.643411 69.4532755 1.841692732 0.013563 209 54 SH2228 2228 Phe1 tRNA 16 28 50.370625 139.938145 95.154385 1.978428807 0.013529 191 76 SH11989 11989 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S/3'ETS 6831 6853 21.4983 70.318161 45.9082305 1.661890554 0.013479 85 87 SH15504 15504 YBR048W_2_332790_333771_INTRON_46_556 exon/intron 31.30409 143.116123 31.30409 112.812033 72.0580615 1.857682575 0.01347 198 83 SH10217 10217 RUF6 RUF6 931 950 24.161163 88.280673 56.220918 1.749897933 0.01347 149 96 SH8614 8614 snR19 / U1 RNA U1 566 582 23.817359 85.767188 54.7922735 1.738719321 0.013448 196 49 SH3300 3300 Thr2 3' flank 24.203645 88.589387 56.396516 1.751252275 0.013424 132 2 SH4564 4564 U3b (snR17b) U3b 376 388 37.018608 120.873139 78.9458735 1.897329434 0.013408 17 58 SH16542 16542 YER133W_5_432491_433954_INTRON_178_702 5' exon 42.675679 170.701366 42.675679 129.025687 85.850683 1.933743755 0.013407 99 11 SH1901 1901 Lys1 5' flank 24.568301 91.227092 57.8976965 1.762661285 0.013397 201 64 SH3376 3376 Thr4 5' flank 23.940212 86.668659 55.3044355 1.742759964 0.013381 108 73 SH3849 3849 RNaseP RNaseP 211 225 37.040117 120.908364 78.9742405 1.897485458 0.013351 49 81 SH1648 1648 Leu5 106-115 + 3' flank 106 23.365152 82.520475 52.9428135 1.723807017 0.013348 168 59 SH7569 7569 snR189 5' 22.341751 75.633779 48.987765 1.690087626 0.013346 112 59 SH15614 15614 YBR181C_2_592732_591670_INTRON_7_358 intron 26.561522 128.46334 26.561522 102.901818 64.73167 1.811116811 0.013321 151 74 SH568 568 Cys1 3' flank 25.001041 94.411018 59.7060295 1.776018191 0.013319 18 65 SH17656 17656 YKL002W_11_437416_438182_INTRON_61_128 5' exon 28.620722 135.992174 28.620722 108.371452 68.496087 1.835665762 0.013315 67 51 SH21804 21804 copy of SH15279 25.232591 96.137273 60.684932 1.78308087 0.013272 22 51 SH20027 20027 YBR119W spliced 24.837879 93.211628 59.0247535 1.771034182 0.013271 158 11 SH6276 6276 snR42 snR42 161 182 24.892431 93.617636 59.2550335 1.772725248 0.013226 83 36 SH8075 8075 snoRNA cluster 2 snR61 32.037094 144.898906 32.037094 113.861812 72.949453 1.86302204 0.013224 91 44 SH9274 9274 RUF1 5' 25.760807 99.005507 62.383157 1.795067349 0.01321 61 65 SH15223 15223 MT COX3 cox3 23.309923 104.458812 23.309923 82.148889 52.729406 1.722052879 0.013096 163 57 SH17247 17247 YHR097C_8_298611_297387_INTRON_126_249 exon/intron 30.70716 141.68479 30.70716 111.97763 71.342395 1.853347685 0.013093 9 15 SH1163 1163 His1 tRNA 36 48 31.756987 113.475571 72.616279 1.861033991 0.013077 140 36 SH17787 17787 YKL186C_11_93537_92746_INTRON_71_233 5' exon 27.690093 133.190496 27.690093 106.500403 67.095248 1.826691762 0.01302 155 40 SH3242 3242 Thr1 66-73 + 3' flank 66 24.993089 94.384262 59.6886755 1.775891942 0.012987 178 96 SH682 682 Gln3 5' flank 24.428008 90.248008 57.338008 1.758442601 0.012973 35 76 SH13335 13335 MT COX1 COX1-ai5a 23.427667 105.42738 23.427667 82.999713 53.21369 1.726023375 0.012969 142 86 SH537 537 Cys1 5' flank - tRNA3 5' flank 3 26.086804 100.610994 63.348899 1.801739071 0.012965 124 42 SH12866 12866 MT COX1 COX1ai1 25.163449 119.815836 25.163449 95.652387 60.407918 1.781093868 0.012958 106 72 SH9472 9472 RUF2 RUF2 201 215 24.201999 88.620795 56.411397 1.751366855 0.012948 77 40 SH20498 20498 YGR001C spliced 27.586243 106.293119 66.939681 1.825683638 0.012927 36 78 SH19871 19871 Negative Control 29.848132 110.738881 70.2935065 1.846915208 0.012918 168 97 SH9414 9414 RUF2 5' 23.26926 81.876177 52.5727185 1.720760435 0.012905 24 66 SH9803 9803 RUF4 3' 24.564673 91.24705 57.9058615 1.762722527 0.012902 192 31 SH21299 21299 YPL198W spliced 26.587108 103.061317 64.8242125 1.81173725 0.012898 61 53 SH1925 1925 Lys1 3' flank 26.707914 103.658379 65.1831465 1.814135321 0.012839 200 92 SH17438 17438 YIL133C_9_99416_98527_INTRON_32_321 intron 71.839874 241.250531 71.839874 170.410657 121.1252655 2.083234742 0.012826 204 18 SH6647 6647 snR48 snR48 61 78 24.869235 93.485564 59.1773995 1.772155877 0.012821 182 23 SH19002 19002 YOR122C_15_552886_552297_INTRON_14_222 intron 23.217518 103.735509 23.217518 81.517991 52.3677545 1.719063952 0.012801 158 19 SH8794 8794 LSR1 / U2 RNA U2 611 630 22.131155 74.318869 48.225012 1.683272344 0.012789 199 7 SH3868 3868 RNaseP RNaseP 306 322 33.006646 115.246465 74.1265555 1.86997382 0.012755 127 58 SH730 730 Gln4 5' flank 165.947453 304.291923 235.119688 2.371288997 0.012721 122 69 SH5343 5343 snR30 snR30 566 582 25.956036 99.99327 62.974653 1.799165783 0.012719 199 53 SH906 906 Glu3 tRNA 41 53 3434.109881 4215.787472 3824.948677 3.582625612 0.012669 70 102 SH21296 21296 YPL198W spliced 25.128246 95.419271 60.2737585 1.780128274 0.012661 190 44 SH4628 4628 snR3 snR3 56 73 24.018186 87.305174 55.66168 1.74555631 0.012661 51 103 SH3994 3994 RNase MRP 3' 24.090434 87.83817 55.964302 1.747911092 0.012638 93 24 SH6465 6465 snR45 171-172 + 3' 171 22.460281 76.458214 49.4592475 1.694247504 0.012624 81 96 SH20220 20220 YDR092W spliced 34.835483 117.844133 76.339808 1.882751063 0.012623 41 81 SH2144 2144 Met1 3' flank 26.713836 103.706533 65.2101845 1.814315429 0.012604 129 62 SH4395 4395 telomerase RNA telomerase 1011 1031 24.432921 90.318284 57.3756025 1.758727259 0.012598 103 97 SH15458 15458 YBL087C_2_60732_59815_INTRON_43_546 intron 24.778744 116.622227 24.778744 92.843483 58.8111135 1.769459402 0.012574 100 80 SH7182 7182 snR64 5' 1164.07351 1618.073745 1391.073628 3.143350117 0.012571 163 58 SH20950 20950 YLR448W spliced 28.671694 108.516901 68.5942975 1.836288013 0.01257 20 74 SH12868 12868 MT COX1 COX1ai1 24.706008 116.017342 24.706008 92.311334 58.508671 1.767220233 0.01256 205 17 SH16313 16313 YDR471W_4_1401759_1402553_INTRON_32_415 5' exon 24.739458 116.297103 24.739458 92.557645 58.6485515 1.76825729 0.012548 25 32 SH20248 20248 YDR381C-A spliced 24.935048 93.999391 59.4672195 1.774277633 0.012528 85 18 SH1078 1078 Gly3 3' flank 27.79603 106.744679 67.2703545 1.827823716 0.012528 105 11 SH12903 12903 MT COX1 Exon2 / cox1ai2 24.441051 113.827068 24.441051 90.386017 57.413534 1.75901428 0.012503 195 17 SH12913 12913 MT COX1 COX1ai2 28.172303 134.684492 28.172303 107.512189 67.842246 1.831500217 0.012497 48 32 SH11101 11101 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2391 2404 1305.903267 1794.065812 1549.98454 3.190327366 0.012464 77 43 SH1057 1057 Gly3 tRNA 21 37 45.418931 132.9892 89.2040655 1.950384648 0.012457 26 52 SH5075 5075 snR11 5' 22.68492 77.942597 50.3137585 1.701686761 0.012417 181 40 SH9398 9398 RUF1 3' 23.597795 84.271919 53.934857 1.731869532 0.01239 165 96 SH20592 20592 YHR039C-A spliced 27.55391 106.257291 66.9056005 1.825462473 0.012388 172 98 SH13894 13894 MT COB intronic 167.720608 473.58044 167.720608 306.859832 237.29022 2.375279839 0.012386 50 88 SH6006 6006 snR37 5' 20.644593 65.284211 42.964402 1.633108771 0.012364 50 61 SH20309 20309 YER007C-A spliced 74.196696 173.856262 124.026479 2.093514415 0.012355 44 3 SH8574 8574 snR19 / U1 RNA U1 366 380 120.226271 240.076204 180.1512375 2.25563725 0.012327 186 52 SH2925 2925 Pro8 3' flank 27.462066 106.073934 66.768 1.824568367 0.012298 32 91 SH14434 14434 MT 21S rRNA 21S rRNA3 46.122528 179.130545 46.122528 134.008017 90.0652725 1.954557367 0.012278 66 82 SH18776 18776 YNL265C_14_145280_144279_INTRON_28_132 intron 22.242925 96.319868 22.242925 75.076943 48.659934 1.687171516 0.012273 114 25 SH7185 7185 snR64 5' - 7 -9 7 86.86798 192.109792 139.488886 2.144539606 0.012261 30 86 SH14031 14031 MT COB exon4/cytbi4 25.678255 123.356623 25.678255 98.678368 62.1783115 1.793638924 0.012257 17 2 SH10437 10437 RUF8 RUF8 111 130 25.276064 96.567098 60.921581 1.784771165 0.012212 71 104 SH20999 20999 YML085C spliced 25.033254 94.762009 59.8976315 1.77740965 0.012162 205 15 SH8606 8606 snR19 / U1 RNA U1 526 543 23.017748 80.164951 51.5913495 1.712576888 0.012142 169 83 SH18927 18927 YOL121C_15_92849_92025_INTRON_21_410 intron 28.542322 135.824479 28.542322 108.282157 68.4122395 1.835133807 0.012121 24 40 SH18551 18551 YMR230W_13_732413_733140_INTRON_53_462 intron 25.479378 122.203281 25.479378 97.723903 61.6016405 1.789592278 0.01212 154 81 SH13197 13197 MT COX1 Exon4 25.430162 121.917547 25.430162 97.487385 61.4587735 1.788583889 0.012094 5 77 SH13353 13353 MT COX1 intronic 28.765201 136.497781 28.765201 108.73258 68.7488905 1.837265694 0.01209 198 80 SH14418 14418 MT 21S rRNA 21S rRNA3 187.871123 522.10962 187.871123 335.238497 261.55481 2.417562711 0.012082 2 38 SH13509 13509 MT COX1 intronic 23.861493 109.073644 23.861493 86.212151 55.036822 1.740653348 0.012074 112 25 SH4689 4689 snR4 5' 22.83536 78.964007 50.8996835 1.706715082 0.012033 82 39 SH6819 6819 snR52 snR52 1 20 216.180241 374.825482 295.5028615 2.470561691 0.012012 82 15 SH6559 6559 snR47 5' 27.955332 107.098825 67.5270785 1.829477961 0.012011 174 4 SH7987 7987 snoRNA cluster 2 snR57 23.327656 104.696454 23.327656 82.368798 52.848227 1.723030422 0.012008 97 53 SH3002 3002 Ser2 5' flank 25.967033 100.103329 63.035181 1.799583004 0.011999 146 54 SH20117 20117 YDL075W spliced 26.715917 103.766205 65.241061 1.814521015 0.011996 69 92 SH20156 20156 YDL125C spliced 26.253953 101.505493 63.879723 1.805363024 0.011972 32 72 SH5109 5109 snR11 snR11 146 158 27.71374 106.610685 67.1622125 1.827124995 0.011925 173 91 SH6118 6118 snR39B 5' 23.837011 86.048019 54.942515 1.739908535 0.011915 116 44 SH10637 10637 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 71 87 74.984774 175.0283 125.006537 2.096932724 0.011903 184 97 SH6584 6584 snR47 snR47 26 40 28.680733 108.573868 68.6273005 1.836496916 0.011897 145 85 SH13554 13554 MT COX1 intronic / exon6 24.767239 116.593094 24.767239 92.825855 58.796547 1.769351822 0.011872 23 73 SH4128 4128 SRP RNA SRP RNA 531 543 77.082161 178.022354 127.5522575 2.105688149 0.011864 144 91 SH10192 10192 RUF6 RUF6 806 822 25.843084 99.51072 62.676902 1.797107522 0.011859 163 46 SH2350 2350 Phe3 76-91 + 3' flank 76 53.015565 143.778715 98.39714 1.992982475 0.011836 62 56 SH4633 4633 snR3 snR3 81 97 51.171503 141.197646 96.1845745 1.983105428 0.011834 78 93 SH11174 11174 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2756 2773 151.246917 283.771642 217.5092795 2.33747779 0.011833 65 36 SH19901 19901 snR17B spliced 84.784703 189.128249 136.956476 2.136582573 0.011826 40 84 SH16974 16974 YGR034W_7_555923_556666_INTRON_20_496 intron 22.543645 98.607319 22.543645 77.063674 49.8036595 1.697261255 0.011824 33 93 SH4058 4058 SRP RNA SRP RNA 181 200 24.751603 92.716738 58.7341705 1.76889084 0.011812 146 92 SH15556 15556 YBR082C_2_407127_406586_INTRON_48_142 intron 34.51652 150.961531 34.51652 117.445011 75.9807655 1.880703665 0.011809 135 79 SH20577 20577 YHR012W spliced 23.943113 86.842988 55.3930505 1.743455282 0.011694 146 24 SH12237 12237 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.213587 120.365271 25.213587 96.151684 60.6826355 1.783064434 0.011686 43 6 SH20955 20955 YML024W spliced 56.883844 149.259327 103.0715855 2.013138957 0.011666 154 41 SH3980 3980 RNase MRP RNaseMRP 316 332 25.113508 95.40962 60.261564 1.780040399 0.011639 44 61 SH10351 10351 RUF7 RUF7 366 385 23.176405 81.326255 52.25133 1.718097349 0.011632 205 53 SH12493 12493 MT_tRNA Pro 5' 23.049891 102.483923 23.049891 80.434032 51.7419615 1.713842888 0.011615 131 22 SH3928 3928 RNase MRP RNaseMRP 56 75 23.72552 85.26675 54.496135 1.736365702 0.011587 31 66 SH2599 2599 Pro3 5' flank 25.274387 96.619933 60.94716 1.784953473 0.011553 152 47 SH10517 10517 RUF8 RUF8 511 532 24.848951 93.459177 59.154064 1.771984587 0.011537 43 64 SH20945 20945 YLR426W spliced 25.330337 97.041624 61.1859805 1.786651924 0.011533 155 85 SH21671 21671 copy of SH9621 25.603204 98.370491 61.9868475 1.79229955 0.011525 111 75 SH21736 21736 copy of SH12341 25.298073 96.800304 61.0491885 1.785679895 0.011524 156 28 SH4452 4452 telomerase RNA 1296-1301 + 3' 1296 25.12749 95.527112 60.327301 1.780513896 0.011503 193 12 SH4533 4533 U3b (snR17b) U3b 221 237 30.729554 112.096061 71.4128075 1.853776107 0.011503 160 37 SH9729 9729 RUF4 RUF4 421 435 26.328133 101.907598 64.1178655 1.806979056 0.011478 110 96 SH15665 15665 YBR189W_2_604466_605466_INTRON_8_420 intron 20.771946 85.854424 20.771946 66.082478 43.427212 1.637761949 0.011457 80 38 SH10725 10725 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 511 528 433.103575 676.630532 554.8670535 2.744188938 0.011454 172 100 SH13863 13863 MT COB cytbi2/intronic 23.611048 107.061836 23.611048 84.450788 54.030918 1.732642346 0.011446 112 45 SH13118 13118 MT COX1 COX1ai3 22.99822 102.091604 22.99822 80.093384 51.545802 1.712193301 0.011419 197 41 SH20257 20257 YDR381W spliced 24.295484 89.439098 56.867291 1.75486254 0.011355 7 99 SH13850 13850 MT COB Cytbi2 22.651563 99.459064 22.651563 77.807501 50.229532 1.700959132 0.011349 136 88 SH8786 8786 LSR1 / U2 RNA U2 571 590 23.110817 80.88807 51.9994435 1.715998696 0.011328 162 61 SH6603 6603 snR47 3' 28.670513 108.587333 68.628923 1.836507184 0.011307 96 85 SH15460 15460 YBL087C_2_60732_59815_INTRON_43_546 intron 28.219687 134.896047 28.219687 107.67636 67.9480235 1.832176828 0.011305 70 47 SH19947 19947 YBL040C spliced 25.484261 97.8106 61.6474305 1.78991498 0.011299 8 89 SH13900 13900 MT COB intronic/exon3 23.350356 104.947245 23.350356 82.596889 52.9736225 1.724059672 0.011241 36 57 SH15962 15962 YDL130W_4_229906_230527_INTRON_115_415 intron 22.899476 101.352433 22.899476 79.452957 51.1762165 1.709068175 0.011226 87 51 SH7406 7406 snR69 5' 23.780591 85.699852 54.7402215 1.73830655 0.011218 192 68 SH6395 6395 snR43 3' 22.190184 74.816643 48.5034135 1.685772304 0.011218 189 69 SH7964 7964 snoRNA cluster 2 5' 27.67651 133.251915 27.67651 106.575405 67.1259575 1.826890494 0.011202 103 62 SH5982 5982 snR36 3' 24.941552 94.176045 59.5587985 1.774945928 0.011196 213 29 SH1322 1322 Ile3 5' flank - tRNA7 7 24.908479 93.933327 59.420903 1.773939247 0.011176 115 72 SH3424 3424 Trp1 5' flank 79.282014 181.292687 130.2873505 2.114902252 0.011161 160 8 SH21686 21686 copy of SH10241 24.929 94.087256 59.508128 1.774576288 0.011154 160 38 SH17310 17310 YHR203C_8_505526_504472_INTRON_15_283 intron 24.300497 112.795607 24.300497 89.49511 56.8978035 1.755095501 0.011139 26 54 SH12997 12997 MT COX1 COX1ai2 43.191576 172.09625 43.191576 129.904674 86.548125 1.937257664 0.011125 195 33 SH7048 7048 snR62 snR62 31 52 24.294282 89.455061 56.8746715 1.754918901 0.011087 94 92 SH18337 18337 YML124C_13_23684_22049_INTRON_26_323 intron 24.118154 111.303644 24.118154 88.18549 56.151822 1.749363853 0.011085 211 65 SH2586 2586 Pro2 3' flank 23.841923 86.160929 55.001426 1.740373949 0.011059 210 52 SH930 930 Gly1 5' flank 23.946421 86.926444 55.4364325 1.743795274 0.011042 40 26 SH19260 19260 YPL143W_16_282121_282969_INTRON_20_544 intron 23.452098 105.796851 23.452098 83.344753 53.3984255 1.727528452 0.011014 208 68 SH1913 1913 Lys1 tRNA 21 35 27.415104 106.050286 66.732695 1.824338664 0.011004 66 7 SH8444 8444 snoRNA cluster 5 snR128 26.049655 125.634426 26.049655 100.584771 63.317213 1.801521791 0.011002 35 40 SH339 339 Arg5 tRNA 31 50 24.547609 91.301473 57.924541 1.762862601 0.010993 209 92 SH4037 4037 SRP RNA SRP RNA 76 95 26.518245 102.877942 64.6980935 1.810891483 0.01099 144 69 SH17126 17126 YHR010W_8_126513_127484_INTRON_32_592 intron 24.490776 114.380201 24.490776 90.889425 57.6901005 1.761101296 0.010973 18 98 SH8645 8645 snR19 / U1 RNA 3' 23.788432 85.779992 54.784212 1.738655419 0.010961 143 35 SH13908 13908 MT COB Cytbi3 23.110087 103.024128 23.110087 80.914041 52.012064 1.716104088 0.01096 51 93 SH16527 16527 YER131W_5_423587_424307_INTRON_1_361 intron 25.548135 122.695532 25.548135 98.147397 61.847766 1.791324017 0.01095 154 12 SH9162 9162 snR7 U5 RNA U5 81 96 24.845483 93.491701 59.168592 1.772091235 0.010931 53 49 SH10371 10371 RUF7 RUF7 466 480 57.813057 150.611175 104.212116 2.017918214 0.01093 10 71 SH8445 8445 snoRNA cluster 5 snR128 31.333068 143.325077 31.333068 112.992009 72.1625385 1.858311802 0.010929 179 13 SH3510 3510 Tyr1 3' flank 23.106066 80.888635 51.9973505 1.715981215 0.010925 106 24 SH763 763 Gln4 3' flank 24.941322 94.20095 59.571136 1.775035882 0.010921 24 103 SH8278 8278 snoRNA cluster4 snR67/intergenic 24.685817 116.004844 24.685817 92.319027 58.502422 1.767173846 0.010917 143 84 SH8637 8637 snR19 / U1 RNA 3' 22.465092 76.621456 49.543274 1.694984703 0.010915 90 2 SH1254 1254 Ile2 5' flank 23.907647 86.658517 55.283082 1.742592247 0.010866 114 93 SH14887 14887 MT tRNA Ala 3' 23.982981 110.194743 23.982981 87.211762 55.5973715 1.74505426 0.010854 99 85 SH13778 13778 MT COB intronic 24.077235 110.984894 24.077235 87.907659 55.992447 1.748129448 0.010825 144 43 SH5868 5868 snR35 526-540 + 3' 526 28.580465 108.43365 68.5070575 1.835735314 0.010824 208 15 SH1957 1957 Lys2 5' flank - tRNA5 5 24.583597 91.584534 58.0840655 1.764057006 0.010775 153 8 SH14185 14185 MT COB Exon6 23.008678 102.223992 23.008678 80.215314 51.611996 1.712750655 0.010773 146 8 SH17986 17986 YLR275W_12_694378_694800_INTRON_6_95 intron 24.688949 116.045029 24.688949 92.35608 58.5225145 1.767322978 0.010768 188 78 SH7929 7929 snoRNA cluster1 snR72 25.779401 124.066075 25.779401 99.286674 62.5330375 1.796109525 0.010757 180 65 SH28 28 Ala1 tRNA 36 48 2008.902642 2635.755252 2322.328947 3.365923736 0.010756 27 38 SH5094 5094 snR11 snR11 71 87 262.544851 440.044679 351.294765 2.545671678 0.010749 52 60 SH5600 5600 snR34 5' 27.295463 105.819317 66.55739 1.823196283 0.010731 35 92 SH6336 6336 snR43 5' 26.607889 103.340135 64.974012 1.812739684 0.010713 3 86 SH725 725 Gln3 3' flank 26.172804 101.21019 63.691497 1.804081457 0.010699 160 63 SH14548 14548 MT 21S rRNA 21S rRNA3 24.550882 114.904829 24.550882 91.353947 57.9524145 1.763071535 0.010687 7 47 SH16517 16517 YER117W_5_396765_397649_INTRON_43_513 3' exon 25.992382 125.322913 25.992382 100.330531 63.1614565 1.800452136 0.010682 52 95 SH2782 2782 Pro6 tRNA 1 13 940.429297 1338.750976 1139.590137 3.056748682 0.010681 111 82 SH12379 12379 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.097259 131.510733 27.097259 105.413474 66.2553665 1.821221061 0.010672 124 62 SH21832 21832 copy of SH16332 25.292334 96.849381 61.0708575 1.785834018 0.010597 172 34 SH15347 15347 YBL018C_2_186436_185960_INTRON_48_122 intron 31.362668 143.416745 31.362668 113.054077 72.2083725 1.858587557 0.010564 174 37 SH15889 15889 YDL082W_4_308423_309387_INTRON_5_369 intron 25.147376 119.917088 25.147376 95.769712 60.458544 1.781457684 0.010542 204 67 SH2351 2351 Phe3 81-91 + 3' flank 81 24.420323 90.417667 57.418995 1.759055587 0.010541 195 94 SH6741 6741 snR49 3' 23.567317 84.215392 53.8913545 1.731519099 0.010537 42 92 SH8951 8951 snR17a / U3a U3a 41 56 45.655114 133.460917 89.5580155 1.952104462 0.010527 5 96 SH677 677 Gln3 5' flank 26.183585 101.282508 63.7330465 1.804364679 0.010452 37 16 SH9565 9565 RUF3 RUF3 211 230 22.153087 74.636682 48.3948845 1.684799458 0.010436 109 36 SH19845 19845 Negative Control 27.084017 105.400073 66.242045 1.821133731 0.010422 89 40 SH7275 7275 snR65 3' 26.923999 104.921402 65.9227005 1.81903499 0.010384 180 74 SH3768 3768 Val4 66-73 + 3' flank 66 23.824747 86.096829 54.960788 1.740052951 0.01038 179 46 SH1583 1583 Leu4 tRNA 86 102 52.579172 143.284418 97.931795 1.990923715 0.010337 95 29 SH16065 16065 YDR005C_4_458099_456832_INTRON_7_86 5' exon 22.524542 98.580174 22.524542 77.055632 49.790087 1.697142885 0.010321 48 99 SH20456 20456 YGL178W spliced 23.410107 83.105307 53.257707 1.726382464 0.010306 214 99 SH19220 19220 YPL081W_16_404945_406039_INTRON_8_508 3' exon 25.997947 125.386068 25.997947 100.388121 63.193034 1.800669207 0.010295 48 79 SH18626 18626 YNL096C_14_444312_443395_INTRON_145_489 intron 23.584861 106.948461 23.584861 84.3636 53.9742305 1.732186459 0.010292 41 75 SH15391 15391 YBL040C_2_142830_142074_INTRON_23_119 intron 26.918948 130.824178 26.918948 104.90523 65.912089 1.818965076 0.010278 51 94 SH1746 1746 Leu7 tRNA 26 41 25.41118 97.536149 61.4736645 1.788689103 0.010254 201 18 SH7324 7324 snR66 3' 23.412028 83.123787 53.2679075 1.726465637 0.010252 171 8 SH19401 19401 YPR063C_16_678315_677807_INTRON_42_127 intron 26.856769 130.460257 26.856769 104.603488 65.7301285 1.817764481 0.010224 141 23 SH11507 11507 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4421 4441 971.4704 1378.492632 1174.981516 3.070031035 0.010189 37 41 SH4962 4962 snR9 3' 24.552109 91.414144 57.9831265 1.763301629 0.010141 22 14 SH284 284 Arg4 16-30 16 30 25.174208 96.010213 60.5922105 1.782416797 0.010135 110 64 SH3653 3653 Val2 tRNA 6 18 29.262054 109.842573 69.5523135 1.84231158 0.010106 68 94 SH18817 18817 YNL302C_14_62942_61957_INTRON_21_571 intron 25.889606 124.766825 25.889606 99.877219 62.8834125 1.798536102 0.010071 148 101 SH4868 4868 snR8 snR8 121 133 30.667044 112.083638 71.375341 1.853548196 0.010068 99 49 SH20474 20474 YGL189C spliced 28.390101 108.092783 68.241442 1.834048195 0.010063 167 51 SH9718 9718 RUF4 RUF4 366 380 26.438766 102.563961 64.5013635 1.809568895 0.010051 153 79 SH442 442 Asp1 tRNA 31 43 31.732142 113.607256 72.669699 1.861353361 0.010038 4 89 SH14688 14688 MT 21S rRNA 21S rRNA4 / 3' 25.221561 120.59819 25.221561 96.376629 60.799095 1.783897115 0.010012 162 50 SH5952 5952 snR36 snR36 216 232 32.408457 114.559649 73.484053 1.866193102 0.010003 134 44 SH20316 20316 YER044C-A spliced 25.620892 98.57875 62.099821 1.793090348 0.009942 172 50 SH18212 18212 YML025C_13_225365_224406_INTRON_28_126 exon/intron 24.653337 115.829148 24.653337 92.175811 58.414574 1.766521214 0.009914 211 89 SH962 962 Gly1 61-72 + 3' flank 61 26.577327 103.259343 64.918335 1.812367373 0.009859 211 7 SH13570 13570 MT COX1 Exon 6 23.710659 108.024316 23.710659 85.313657 54.512158 1.736493375 0.009853 207 8 SH15425 15425 YBL072C_2_89435_88518_INTRON_1_308 intron 26.066646 125.827516 26.066646 100.76087 63.413758 1.802183491 0.009822 142 102 SH4658 4658 snR3 3' 22.920673 79.707673 51.314173 1.710237334 0.009806 95 18 SH5043 5043 snR10 3' 23.979101 87.281513 55.630307 1.745311457 0.009777 151 36 SH16689 16689 YGL030W_7_439087_439634_INTRON_4_233 intron 23.27376 104.451463 23.27376 82.177703 52.7257315 1.722022614 0.009765 168 77 SH9011 9011 snR17a / U3a U3a 341 359 24.469349 90.847528 57.6584385 1.760862877 0.00975 96 15 SH7177 7177 snR64 5' 26.072839 100.798364 63.4356015 1.802333062 0.009731 101 47 SH15925 15925 YDL108W_4_267697_268698_INTRON_29_109 exon/intron 28.452969 135.695456 28.452969 108.242487 68.347728 1.834724082 0.009671 121 7 SH1407 1407 Leu1 106-115 + 3' flank 106 24.855199 93.686121 59.27066 1.772839763 0.009654 129 60 SH2703 2703 Pro4 3' flank 24.526636 91.273868 57.900252 1.762680454 0.009654 205 29 SH14091 14091 MT COB Cytbi4 25.966682 125.254519 25.966682 100.287837 63.1272595 1.800216936 0.00963 154 77 SH14858 14858 MT tRNA Ser2; tRNA Arg2 tRNA Ser 25.128474 119.848051 25.128474 95.719577 60.4240255 1.781209655 0.009616 137 71 SH16465 16465 YER093C-A_5_348396_347908_INTRON_125_199 intron 25.483192 122.417962 25.483192 97.93477 61.708981 1.790348375 0.009614 71 102 SH13833 13833 MT COB Cytbi2 23.461357 105.995023 23.461357 83.533666 53.4975115 1.728333581 0.009612 196 57 SH19588 19588 AEP2/ATP13 2.1 26.251273 101.681745 63.966509 1.80595265 0.009597 87 55 SH3107 3107 Ser4 5' flank 26.223996 101.548461 63.8862285 1.80540725 0.009594 151 5 SH2216 2216 Phe1 5' flank 31.326806 113.05767 72.192238 1.858490505 0.009564 196 82 SH7570 7570 snR189 5' 23.970373 87.23723 55.6038015 1.745104484 0.00956 190 52 SH20055 20055 YBR220C spliced 23.663235 84.999256 54.3312455 1.735049661 0.009519 178 32 SH13556 13556 MT COX1 Exon 6 23.312402 104.787905 23.312402 82.475503 52.8939525 1.723406021 0.009508 201 2 SH17969 17969 YLR185W_12_522665_523290_INTRON_8_366 intron 28.476265 135.775928 28.476265 108.299663 68.387964 1.834979674 0.009496 130 38 SH12944 12944 MT COX1 COX1ai2 27.093238 131.564266 27.093238 105.471028 66.282133 1.821396476 0.009495 92 15 SH16879 16879 YGL189C_7_148970_148233_INTRON_1_368 5' exon 25.812442 124.358838 25.812442 99.546396 62.679419 1.797124962 0.009491 158 76 SH15836 15836 YDL075W_4_322225_322987_INTRON_58_478 intron 26.846176 130.457658 26.846176 104.611482 65.728829 1.817755895 0.009491 178 75 SH16679 16679 YGL030W_7_439087_439634_INTRON_4_233 exon/intron 35.787346 154.133945 35.787346 119.346599 77.5669725 1.889676841 0.009437 103 91 SH16125 16125 YDR064W_4_579453_580447_INTRON_22_560 intron 26.767821 129.99834 26.767821 104.230519 65.49917 1.816235797 0.009433 188 74 SH20323 20323 YER056C-A spliced 29.3848 110.127313 69.7560565 1.843581921 0.009421 213 76 SH14734 14734 MT tRNA cys; tRNA his tRNA his 23.818966 108.962212 23.818966 86.143246 54.981106 1.740213472 0.009396 11 22 SH17410 17410 YIL106W_9_166412_167441_INTRON_21_105 exon/intron 23.490947 106.256922 23.490947 83.765975 53.628461 1.729395334 0.009389 143 88 SH16610 16610 YFL034C-B_6_63992_63015_INTRON_21_134 intron 23.961306 110.147739 23.961306 87.186433 55.5738695 1.744870637 0.009387 38 12 SH9706 9706 RUF4 RUF4 306 318 26.318213 102.028184 64.1731985 1.807353686 0.009364 55 4 SH7400 7400 snR69 5' 25.680801 98.916644 62.2987225 1.794479141 0.009343 67 34 SH637 637 Gln2 5' flank 28.325475 108.004535 68.165005 1.833561471 0.009319 114 47 SH4324 4324 telomerase RNA telomerase 656 672 24.355669 90.063095 57.209382 1.757467256 0.009306 62 9 SH10376 10376 RUF7 486-500 + 3' 491 33.53173 116.194674 74.863202 1.874268399 0.009303 47 5 SH11271 11271 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3241 3259 23.270385 82.198416 52.7344005 1.722094013 0.009244 88 51 SH3377 3377 Thr4 5' flank 23.823944 86.194027 55.0089855 1.740433636 0.009236 196 58 SH14315 14315 MT VAR1 includes 5’ processing site VAR1 24.051476 110.915401 24.051476 87.863925 55.9577005 1.747859859 0.009235 164 64 SH7680 7680 snoRNA cluster1 intergenic 42.727293 171.102241 42.727293 129.374948 86.0511205 1.93475653 0.009208 57 55 SH1079 1079 Gly3 3' flank 31.490173 113.309793 72.399983 1.859738464 0.009206 71 32 SH3621 3621 Val1 3' flank 21.103389 68.213549 44.658469 1.64990383 0.00917 52 15 SH21274 21274 YPL090C spliced 24.828188 93.534101 59.1811445 1.77218336 0.009159 182 17 SH17609 17609 YJL205C-A_10_50443_50139_INTRON_33_175 3' exon 25.306242 121.405921 25.306242 97.099679 61.2029605 1.78677243 0.009131 116 42 SH17589 17589 YJL191W_10_73786_74610_INTRON_11_418 intron 35.032773 152.353897 35.032773 118.321124 76.6769485 1.884664821 0.009125 208 79 SH13727 13727 MT COB 5'/Exon1 24.076885 111.138759 24.076885 88.061874 56.0693795 1.74872575 0.009122 192 53 SH10384 10384 RUF7 3' 25.962725 100.309261 63.135993 1.800277015 0.009113 65 34 SH14738 14738 MT tRNA cys; tRNA his 3' 22.565019 98.983597 22.565019 77.418578 49.9917985 1.698898761 0.009064 212 47 SH10407 10407 RUF8 5' 26.610338 103.48814 65.049239 1.81324222 0.009038 31 96 SH18565 18565 YNL012W_14_609682_611661_INTRON_106_189 5' exon 26.71272 129.705398 26.71272 103.992678 65.352699 1.815263528 0.009025 178 101 SH13324 13324 MT COX1 COX1-ai5a 24.524703 114.843655 24.524703 91.318952 57.9218275 1.762842256 0.009022 175 26 SH10273 10273 RUF7 5' 24.664679 92.344086 58.5043825 1.7671884 0.009015 133 33 SH16862 16862 YGL187C_7_150529_149708_INTRON_1_342 intron 45.494984 177.83038 45.494984 133.335396 89.41519 1.951411304 0.009013 53 62 SH2007 2007 Lys3 5' flank 26.614291 103.51102 65.0626555 1.813331785 0.008995 57 52 SH20780 20780 YKL006W spliced 53.555013 144.749603 99.152308 1.996302828 0.008989 43 27 SH2140 2140 Met1 3' flank 23.461931 83.593 53.5274655 1.72857668 0.00898 204 52 SH10120 10120 RUF6 RUF6 446 462 26.425784 102.587563 64.5066735 1.809604647 0.008966 23 63 SH17708 17708 YKL081W_11_282533_284097_INTRON_206_531 intron 30.353416 141.042772 30.353416 111.689356 71.021386 1.851389143 0.008957 180 32 SH7969 7969 snoRNA cluster 2 5' 40.849764 166.546961 40.849764 126.697197 83.7734805 1.923106559 0.008947 53 60 SH15729 15729 YBR230C_2_680008_679507_INTRON_12_108 exon/intron 26.941738 131.06963 26.941738 105.127892 66.034815 1.819772965 0.008939 6 5 SH12621 12621 MT_15S MT_15S 28.813999 136.828082 28.813999 109.014083 68.914041 1.838307717 0.008917 161 7 SH12192 12192 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7846 7859 66.816135 163.593959 115.205047 2.061471505 0.008899 83 74 SH16492 16492 YER117W_5_396765_397649_INTRON_43_513 5' exon 412.526036 1061.243973 412.526036 649.717937 531.1219865 2.72519428 0.008857 94 102 SH20974 20974 YML034W spliced 33.102889 115.605138 74.3540135 1.871304416 0.008857 187 14 SH19519 19519 ACT1 25.950575 100.273748 63.1121615 1.800113054 0.00881 34 10 SH20794 20794 YKL156W spliced 24.25094 89.351044 56.800992 1.754355921 0.008809 162 4 SH15250 15250 MT tRNA fMet 3' 24.702608 116.345054 24.702608 92.642446 58.672527 1.768434793 0.008807 26 12 SH19803 19803 Negative Control 33.067332 115.557107 74.3122195 1.871060233 0.008802 50 101 SH6085 6085 snR37 snR37 341 360 24.542167 91.470476 58.0063215 1.763475325 0.008766 184 54 SH17897 17897 YLR061W_12_263195_263949_INTRON_13_401 5' exon 26.994097 131.300844 26.994097 105.306747 66.150422 1.820532619 0.00876 67 100 SH19070 19070 YOR293W_15_867094_867848_INTRON_53_489 intron 57.327734 206.439232 57.327734 150.111498 103.719616 2.0158609 0.008738 53 77 SH10188 10188 RUF6 RUF6 786 805 24.721405 92.787314 58.7543595 1.769040096 0.008737 92 65 SH15698 15698 YBR220C_2_663261_662457_INTRON_302_722 intron 23.54794 106.782118 23.54794 84.234178 53.891059 1.731516718 0.008737 177 4 SH8936 8936 snR17a / U3a 5' 23.639571 84.89759 54.2685805 1.734548462 0.008732 136 83 SH19399 19399 YPR063C_16_678315_677807_INTRON_42_127 intron 23.923955 109.896027 23.923955 86.972072 55.4480135 1.743885992 0.00873 200 9 SH19715 19715 Negative Control 26.319856 102.087464 64.20366 1.807559786 0.008724 214 21 SH1341 1341 Ile3 tRNA-intron/exon 86 102 24.890218 94.034888 59.462553 1.774243552 0.008722 26 84 SH9483 9483 RUF2 256-268 + 3' 256 55.233085 147.168238 101.2006615 2.005183351 0.008712 19 52 SH3963 3963 RNase MRP RNaseMRP 231 247 24.668584 92.403081 58.5358325 1.767421799 0.008695 22 85 SH13405 13405 MT COX1 intronic 24.689087 116.244827 24.689087 92.55574 58.6224135 1.768063694 0.008674 170 96 SH14396 14396 MT 21S rRNA 21S rRNA3 241.059277 650.460856 241.059277 410.401579 325.730428 2.51285833 0.008664 15 13 SH18063 18063 YLR344W_12_819312_820142_INTRON_20_466 5' exon 40.792986 166.42621 40.792986 126.633224 83.713105 1.922793451 0.008659 8 78 SH15096 15096 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 23.166831 103.680647 23.166831 81.513816 52.3403235 1.718836403 0.008633 169 36 SH18815 18815 YNL302C_14_62942_61957_INTRON_21_571 intron 26.92654 131.012276 26.92654 105.085736 66.006138 1.819584323 0.008541 151 40 SH8664 8664 LSR1 / U2 RNA 5' 23.127706 81.244785 52.1862455 1.717556053 0.008531 148 95 SH18486 18486 YMR194W_13_651144_651909_INTRON_17_479 intron 24.668605 116.088984 24.668605 92.420379 58.544492 1.767486042 0.008514 61 3 SH13928 13928 MT COB Cytbi3 25.280723 121.250922 25.280723 96.970199 61.125461 1.786222148 0.008504 44 30 SH19326 19326 YPL218W_16_138697_139408_INTRON_29_167 intron 23.339115 105.093694 23.339115 82.754579 53.046847 1.724659575 0.008489 32 65 SH16006 16006 YDL137W_4_216158_217074_INTRON_1_332 intron 25.278604 121.236216 25.278604 96.957612 61.118108 1.786169902 0.008471 25 72 SH3530 3530 Tyr2 5' flank 22.895036 79.645596 51.270316 1.709865994 0.008458 19 48 SH13494 13494 MT COX1 Exon 5g / intronic 45.409283 177.661556 45.409283 133.252273 89.330778 1.951001116 0.00843 30 61 SH9355 9355 RUF1 RUF1 351 373 22.730505 78.560515 50.64551 1.704540949 0.008393 214 16 SH18889 18889 YOL047C_15_242745_241612_INTRON_244_306 3' exon 23.765084 108.605616 23.765084 85.840532 54.802808 1.738802812 0.008392 72 15 SH15984 15984 YDL136W_4_217600_218367_INTRON_4_408 intron 25.172434 120.342373 25.172434 96.169939 60.6711865 1.782982488 0.00838 23 104 SH17741 17741 YKL156W_11_158616_159214_INTRON_4_353 3' exon 24.793719 117.150871 24.793719 93.357152 59.0754355 1.771406932 0.00835 151 75 SH6227 6227 snR42 5' 25.086493 95.531119 60.308806 1.78038073 0.008342 30 94 SH20482 20482 YGL226C-A spliced 26.917621 105.060171 65.988896 1.819470863 0.008318 111 10 SH3395 3395 Thr4 61-72 + 3' flank 61 178.211883 322.413387 250.312635 2.398482772 0.008311 209 49 SH15948 15948 YDL125C_4_239605_239018_INTRON_98_208 intron 28.602646 136.226008 28.602646 108.623362 68.613004 1.836406434 0.008308 124 63 SH21144 21144 YNL162W spliced 37.93854 122.537173 80.2378565 1.904379318 0.008275 126 86 SH21227 21227 YOR234C spliced 36.936829 121.068581 79.002705 1.897641961 0.008212 52 61 SH6108 6108 snR37 3' 25.185254 96.283489 60.7343715 1.783434542 0.008203 126 54 SH19676 19676 SIR1 2.4 23.978373 87.420973 55.699673 1.745852646 0.008193 161 49 SH13550 13550 MT COX1 intronic 26.345423 127.601286 26.345423 102.255863 64.300643 1.808215316 0.008188 75 50 SH13962 13962 MT COB Cytbi3 25.615857 123.30941 25.615857 98.693553 62.154705 1.79347401 0.008142 138 60 SH13926 13926 MT COB Cytbi3 78.966417 259.112171 78.966417 181.145754 130.0560855 2.114130678 0.008134 13 70 SH9485 9485 RUF2 266-268 + 3' 266 22.941027 79.978101 51.459564 1.711466102 0.00813 110 73 SH18214 18214 YML025C_13_225365_224406_INTRON_28_126 intron 21.878721 93.93031 21.878721 73.051589 47.465155 1.676374903 0.008118 53 74 SH13232 13232 MT COX1 COX1-ai4 24.274092 112.856678 24.274092 89.582586 56.928339 1.755328513 0.00811 184 99 SH19403 19403 YPR063C_16_678315_677807_INTRON_42_127 3' exon 28.652962 136.390645 28.652962 108.737683 68.6953225 1.836927167 0.008087 11 34 SH21259 21259 YPL079W spliced 34.874305 118.160832 76.5175685 1.883761161 0.008077 154 35 SH12565 12565 MT_15S MT_15S 29.33067 138.429136 29.33067 110.098466 69.714568 1.843323541 0.008068 130 31 SH9453 9453 RUF2 RUF2 106 121 23.356761 82.917883 53.137322 1.725399663 0.008063 97 51 SH12454 12454 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.165454 126.551981 26.165454 101.386527 63.7759905 1.804657212 0.008028 29 10 SH7472 7472 snR71 5' 26.588643 103.463624 65.0261335 1.813087931 0.008026 147 76 SH9462 9462 RUF2 RUF2 151 167 27.210335 105.796488 66.5034115 1.822843924 0.008009 142 96 SH14708 14708 MT tRNA thr2 3' 23.108793 103.264763 23.108793 81.15597 52.1323815 1.717107565 0.007998 45 99 SH14603 14603 MT 21S rRNA Sce1 endonuc 112.074921 340.149626 112.074921 229.074705 170.574813 2.231914904 0.007982 198 66 SH18813 18813 YNL302C_14_62942_61957_INTRON_21_571 intron 27.771486 133.725968 27.771486 106.954482 67.362984 1.828421317 0.007944 186 61 SH14177 14177 MT COB intron/exon6 24.326402 113.303231 24.326402 89.976829 57.1516155 1.757028511 0.007943 139 14 SH7818 7818 snoRNA cluster1 intergenic 24.641489 115.917227 24.641489 92.275738 58.4586135 1.766848511 0.00794 35 15 SH8337 8337 snoRNA cluster4 snR53 24.025519 110.817113 24.025519 87.791594 55.9085565 1.747478279 0.007939 174 76 SH16418 16418 YER056C-A_5_270183_269421_INTRON_38_434 intron 23.934246 110.058253 23.934246 87.124007 55.5291265 1.744520842 0.007891 78 56 SH12643 12643 MT_15S MT_15S 23.88909 109.687012 23.88909 86.797922 55.343506 1.743066668 0.007832 124 97 SH19114 19114 YPL031C_16_493033_492014_INTRON_18_119 5' exon 31.784669 144.588691 31.784669 113.804022 72.7943455 1.862097646 0.00781 44 79 SH14933 14933 MT tRNA Asn tRNA 26.183521 126.676848 26.183521 101.493327 63.838424 1.805082157 0.007798 179 16 SH7471 7471 snR71 5' 27.102451 105.585287 66.343869 1.821800795 0.007795 78 57 SH19149 19149 YPL075W_16_412249_415357_INTRON_9_759 intron 25.910386 125.06905 25.910386 100.158664 63.034525 1.799578485 0.007777 85 13 SH19533 19533 CBP1 1.2 25.822134 99.728466 62.7753 1.797788797 0.007767 116 15 SH4979 4979 snR10 5' 22.90321 79.755906 51.329558 1.710367525 0.007763 112 95 SH2239 2239 Phe1 tRNA 71 86 43.181156 130.113188 86.647172 1.937754393 0.007752 183 14 SH13691 13691 MT ORF 5 (hypothetical) ORF5 / 3' 23.46609 106.197008 23.46609 83.730918 53.598504 1.729152668 0.007747 121 17 SH7839 7839 snoRNA cluster1 snR74 26.510848 128.616021 26.510848 103.105173 64.8080105 1.81162869 0.007729 22 18 SH2577 2577 Pro2 3' flank 24.535102 91.516284 58.025693 1.763620336 0.007728 2 101 SH5604 5604 snR34 5' 26.062623 100.909347 63.485985 1.802677862 0.007697 82 24 SH21250 21250 YPL031C spliced 25.901142 100.120791 63.0109665 1.799416141 0.007684 166 36 SH11533 11533 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4551 4568 94.988586 204.405494 149.69704 2.175213213 0.007642 177 42 SH14669 14669 MT 21S rRNA 21S rRNA4 23.099498 103.220821 23.099498 81.121323 52.1104105 1.716924494 0.00763 125 62 SH18216 18216 YML025C_13_225365_224406_INTRON_28_126 intron 27.274386 132.224843 27.274386 105.950457 66.6124215 1.823555221 0.007624 163 91 SH13528 13528 MT COX1 intronic 24.344875 113.4855 24.344875 90.140625 57.24275 1.75772049 0.00762 103 47 SH18162 18162 YLR448W_12_1028848_1029762_INTRON_16_399 5' exon 28.427656 135.7384 28.427656 108.310744 68.3692 1.834860498 0.007592 161 69 SH20063 20063 YBR230C spliced 24.348746 90.173184 57.260965 1.757858663 0.007572 42 90 SH15139 15139 MT tRNA Thr1 reverse complement 5' 23.424286 105.87313 23.424286 83.448844 53.436565 1.727838533 0.007532 28 70 SH20179 20179 YDL189W spliced 25.275186 97.028155 61.1516705 1.786408325 0.007503 140 26 SH14882 14882 MT tRNA Ala tRNA 27.517346 132.97571 27.517346 106.458364 66.987855 1.825996072 0.007496 103 30 SH14962 14962 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 23.460464 106.173105 23.460464 83.712641 53.5865525 1.729055818 0.007492 57 4 SH14682 14682 MT 21S rRNA 21S rRNA4 23.50659 106.55224 23.50659 84.04565 53.77612 1.730589464 0.007488 102 2 SH9010 9010 snR17a / U3a U3a 336 357 24.812302 93.581903 59.1971025 1.77230045 0.007438 155 33 SH7063 7063 snR62 3' 25.082659 95.592312 60.3374855 1.780587207 0.007426 22 96 SH15688 15688 YBR191W_2_606228_607098_INTRON_12_399 intron 22.252319 96.759579 22.252319 75.50726 48.8797895 1.689129327 0.007408 85 91 SH8559 8559 snR19 / U1 RNA U1 291 308 27.567455 106.567996 67.0677255 1.826513578 0.007379 176 20 SH10208 10208 RUF6 RUF6 886 902 42.961036 129.827287 86.3941615 1.936484394 0.00737 167 49 SH18822 18822 YNL302C_14_62942_61957_INTRON_21_571 intron 24.376295 113.771058 24.376295 90.394763 57.385529 1.758802389 0.00734 98 19 SH10288 10288 RUF7 RUF7 51 72 23.860895 86.63602 55.2484575 1.742320157 0.007338 120 23 SH15690 15690 YBR191W_2_606228_607098_INTRON_12_399 3' exon 42.105715 169.719167 42.105715 128.613452 85.3595835 1.931252287 0.00732 73 2 SH14949 14949 MT tRNA Met tRNA 22.489876 98.554424 22.489876 77.064548 49.777212 1.697030568 0.007289 29 15 SH2248 2248 Phe1 3' flank 23.887066 86.833215 55.3601405 1.743197184 0.00728 89 63 SH12254 12254 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.976554 125.498439 25.976554 100.521885 63.2492195 1.801055171 0.007272 202 12 SH11233 11233 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3051 3069 22276.36464 21854.81693 22065.59078 4.34371556 0.007221 27 51 SH21196 21196 YOL121C spliced 28.987453 109.46111 69.2242815 1.840258457 0.007218 210 3 SH2541 2541 Pro2 5' flank 25.863253 99.972246 62.9177495 1.79877318 0.007218 189 23 SH19476 19476 ADH1 23.721533 85.630047 54.67579 1.737795067 0.007199 177 79 SH8687 8687 LSR1 / U2 RNA U2 76 93 23.730661 85.697332 54.7139965 1.738098438 0.007191 67 79 SH6924 6924 snR58 5' - 1 -19 1 24.14967 88.768937 56.4593035 1.751735516 0.007185 107 55 SH72 72 Ala2 5' flank - tRNA10 -4 10 288.691632 477.992949 383.3422905 2.583586733 0.007156 94 36 SH3397 3397 Thr4 71-72 + 3' flank 71 24.182084 89.006171 56.5941275 1.752771369 0.007146 186 58 SH16335 16335 YDR471W_4_1401759_1402553_INTRON_32_415 3' exon 64.122393 222.983107 64.122393 159.860714 111.9915535 2.049185269 0.007129 209 88 SH20460 20460 YGL178W spliced 26.593678 103.561579 65.0776285 1.813431718 0.007125 63 56 SH13829 13829 MT COB Cytbi2 22.684904 100.0447 22.684904 78.359796 50.52235 1.703483543 0.007124 173 56 SH6192 6192 snR40 snR40 21 35 34.856553 118.193164 76.5248585 1.883802535 0.007089 195 41 SH9761 9761 RUF4 RUF4 581 598 26.384223 102.536011 64.460117 1.809291089 0.007071 22 34 SH8856 8856 LSR1 / U2 RNA U2 921 935 2058.837237 2699.942609 2379.389923 3.376465618 0.007065 22 38 SH18881 18881 YNR053C_14_723108_721117_INTRON_811_1341 3' exon 27.55225 133.106988 27.55225 106.554738 67.053494 1.826421413 0.007061 93 52 SH3322 3322 Thr3 5' flank 24.001349 87.696487 55.848918 1.747014764 0.007033 3 39 SH10113 10113 RUF6 RUF6 411 432 37.179359 121.50479 79.3420745 1.899503551 0.00694 88 11 SH15363 15363 YBL027W_2_168385_169338_INTRON_3_386 5' exon 27.791315 133.844384 27.791315 107.053069 67.422192 1.828802868 0.006923 78 78 SH10954 10954 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1656 1673 26380.35378 25366.12934 25873.24156 4.412850843 0.006917 162 11 SH16580 16580 YER179W_5_548416_549512_INTRON_133_224 intron/exon 24.745415 116.884407 24.745415 93.138992 58.9422035 1.770426368 0.006905 9 17 SH1307 1307 Ile3 5' flank 23.398259 83.31783 53.3580445 1.727199905 0.006888 34 25 SH18984 18984 YOR096W_15_505793_506766_INTRON_145_545 intron 26.815583 130.493274 26.815583 104.677691 65.746637 1.817873543 0.006848 51 18 SH17346 17346 YIL018W_9_316766_317930_INTRON_5_404 intron 23.816085 109.169129 23.816085 86.353044 55.0845645 1.74102992 0.006838 126 87 SH9450 9450 RUF2 RUF2 91 107 23.85466 86.637036 55.245848 1.742299644 0.006822 186 16 SH5134 5134 snR11 3' 24.641075 92.379238 58.5101565 1.76723126 0.006815 31 6 SH16135 16135 YDR064W_4_579453_580447_INTRON_22_560 3' exon 26.693925 129.776491 26.693925 104.082566 65.3882455 1.815499685 0.00679 83 96 SH475 475 Asp2 5' flank 25.47697 98.122104 61.799537 1.790985221 0.006785 63 14 SH13102 13102 MT COX1 COX1ai3 24.336264 113.491668 24.336264 90.155404 57.245834 1.757743887 0.006784 160 23 SH14455 14455 MT 21S rRNA 21S rRNA3 28.571407 136.220561 28.571407 108.649154 68.6102805 1.836389195 0.006766 134 30 SH20478 20478 YGL189C spliced 32.100929 114.308231 73.20458 1.864538253 0.006757 208 10 SH2835 2835 Pro7 5' flank 25.811912 99.758246 62.785079 1.797856445 0.006749 125 73 SH10197 10197 RUF6 RUF6 831 848 26.169042 101.508235 63.8386385 1.805083616 0.006719 48 103 SH11364 11364 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3706 3723 2067.818557 2710.976883 2389.39772 3.378288445 0.006695 192 30 SH15073 15073 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.329003 113.441993 24.329003 90.11299 57.2209965 1.757555417 0.006673 54 67 SH19601 19601 AEP2/ATP13 2.1 23.680331 85.377915 54.529123 1.736628513 0.006663 149 33 SH5503 5503 snR32 176-188+3' 176 23.465353 83.821254 53.6433035 1.729515515 0.006655 158 99 SH14730 14730 MT tRNA cys; tRNA his intergenic / tRNA his 24.58398 115.560773 24.58398 91.976793 58.2803865 1.765522423 0.006638 103 67 SH4811 4811 snR5 3' 24.535721 91.623725 58.079723 1.764024536 0.006633 120 91 SH4384 4384 telomerase RNA telomerase 956 973 29.144087 109.80935 69.4767185 1.841839298 0.006631 123 58 SH15244 15244 MT tRNA fMet 5' / tRNA 25.315903 121.667224 25.315903 97.351321 61.333612 1.787698541 0.00662 176 93 SH21190 21190 YOL120C spliced 24.154495 88.856424 56.5054595 1.752090411 0.006606 94 100 SH18862 18862 YNR053C_14_723108_721117_INTRON_811_1341 intron 36.801249 156.766884 36.801249 120.965635 78.883442 1.896985852 0.0066 39 50 SH1729 1729 Leu7 5' flank 168.298612 308.774568 238.53659 2.377555007 0.006575 59 68 SH3643 3643 Val2 5' flank 22.836285 79.408754 51.1225195 1.708612249 0.006543 109 31 SH1534 1534 Leu3 3' flank 24.981379 94.924299 59.952839 1.777809753 0.006531 212 52 SH20830 20830 YKR094C spliced 23.917569 87.126742 55.5221555 1.744466318 0.006516 46 20 SH20389 20389 YFL034C-B spliced 26.93418 105.291516 66.112848 1.820285866 0.006505 170 35 SH9362 9362 RUF1 RUF1 386 402 24.935374 94.586256 59.760815 1.776416512 0.006486 46 73 SH7327 7327 snR66 3' 44.122911 131.52144 87.8221755 1.943604191 0.006455 57 8 SH12889 12889 MT COX1 COX1ai1 25.572931 123.19092 25.572931 98.617989 62.09546 1.793059849 0.006417 11 21 SH13958 13958 MT COB Cytbi3 23.485059 106.471304 23.485059 83.986245 53.735652 1.730262523 0.006395 210 101 SH16098 16098 YDR059C_4_569765_569229_INTRON_48_137 intron 23.958401 110.398943 23.958401 87.440542 55.6994715 1.745851074 0.006371 151 2 SH12035 12035 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7061 7086 22.697863 78.505061 50.601462 1.704163065 0.00637 83 76 SH7908 7908 snoRNA cluster1 intergenic 22.27645 97.020206 22.27645 75.743756 49.010103 1.690285615 0.006361 208 56 SH16913 16913 YGL251C_7_31636_27921_INTRON_59_210 5' exon 160.962539 458.397417 160.962539 298.434878 229.6987085 2.361158553 0.006314 18 50 SH16584 16584 YFL034C-A_6_64931_64242_INTRON_13_333 exon/intron 29.160786 138.023407 29.160786 109.862621 69.5117035 1.842057932 0.006291 6 3 SH16144 16144 YDR092W_4_629869_630598_INTRON_31_298 intron 26.732497 130.047524 26.732497 104.315027 65.523762 1.816398824 0.006272 145 74 SH16840 16840 YGL178W_7_167356_170575_INTRON_4_643 intron 24.84076 117.746532 24.84076 93.905772 59.373266 1.773590939 0.006261 137 83 SH16435 16435 YER074W_5_306319_307192_INTRON_4_469 intron 23.991418 110.687518 23.991418 87.6961 55.843759 1.746974644 0.006239 190 14 SH19787 19787 Negative Control 28.267802 108.064333 68.1660675 1.83356824 0.006236 162 62 SH6441 6441 snR45 snR45 51 68 24.505187 91.438592 57.9718895 1.763217456 0.006225 158 67 SH18384 18384 YMR116C_13_500687_499455_INTRON_538_810 intron 52.346613 194.615178 52.346613 143.268565 97.807589 1.990372553 0.006218 147 61 SH8743 8743 LSR1 / U2 RNA U2 356 372 25.008108 95.154633 60.0813705 1.778739831 0.006212 83 72 SH1790 1790 Leu8 5' flank 24.265431 89.696896 56.9811635 1.755731313 0.006185 148 88 SH14807 14807 "MT tRNAs (Lys, Arg1, Gly)" intergenic 23.018271 102.686806 23.018271 80.668535 51.843403 1.714693501 0.006184 186 74 SH12320 12320 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.554939 123.103201 25.554939 98.548262 62.0516005 1.792752988 0.006184 208 76 SH8675 8675 LSR1 / U2 RNA U2 16 32 26.023449 100.837361 63.430405 1.802297484 0.006184 172 65 SH10381 10381 RUF7 3' 26.073277 101.08156 63.5774185 1.80330289 0.006182 80 76 SH2597 2597 Pro3 5' flank 25.931364 100.387137 63.1592505 1.800436968 0.006177 200 60 SH6849 6849 snR52 3' 24.26934 89.726992 56.998166 1.755860882 0.006166 106 7 SH17288 17288 YHR141C_8_382752_381991_INTRON_5_445 intron 22.551073 99.110067 22.551073 77.558994 50.0550335 1.699447756 0.006097 91 27 SH7640 7640 snR189 3' 117.808252 237.511336 177.659794 2.249589154 0.006089 167 44 SH4059 4059 SRP RNA SRP RNA 186 205 24.496504 91.38953 57.943017 1.763001104 0.006071 123 10 SH2149 2149 Met1 3' flank 26.787591 104.60549 65.6965405 1.817542501 0.006045 45 46 SH20065 20065 YBR230C spliced 26.787086 104.60472 65.695903 1.817538286 0.006024 166 42 SH1970 1970 Lys2 tRNA 51 63 36.824376 121.035437 78.9299065 1.897241588 0.006018 178 46 SH14639 14639 MT 21S rRNA Sce1 endonuc 22.937811 102.065028 22.937811 80.127217 51.532514 1.71208133 0.006018 51 99 SH465 465 Asp1 3' flank 31.764107 113.873802 72.8189545 1.862244439 0.006014 45 97 SH9091 9091 snR14 / U4 RNA U4 71 88 29.831525 111.085296 70.4584105 1.847932842 0.006003 211 78 SH14303 14303 MT VAR1 includes 5’ processing site VAR1 23.961313 110.459476 23.961313 87.498163 55.729738 1.746087001 0.005976 119 27 SH275 275 Arg4 5' flank 24.38321 90.573085 57.4781475 1.759502763 0.005961 151 83 SH1624 1624 Leu5 5' flank - tRNA5 5 27.738236 106.999495 67.3688655 1.828459234 0.005952 78 12 SH16022 16022 YDL189W_4_122079_123590_INTRON_1_99 intron 23.663022 107.978689 23.663022 85.315667 54.4893445 1.736311583 0.00595 200 72 SH3798 3798 RNaseP 5' flank 26.217961 101.816337 64.017149 1.806296329 0.005865 41 6 SH4497 4497 U3b (snR17b) U3b 41 60 33.392999 116.191692 74.7923455 1.873857153 0.005864 199 96 SH4676 4676 snR4 5' 50.592828 140.820068 95.706448 1.980941198 0.005837 208 22 SH2798 2798 Pro6 tRNA 81 95 25.832186 99.931238 62.881712 1.798524357 0.005805 31 56 SH13243 13243 MT COX1 COX1-ai4 22.692669 100.217555 22.692669 78.524886 50.6087775 1.704225847 0.005687 173 58 SH5281 5281 snR30 snR30 256 270 34.654589 117.991642 76.3231155 1.88265609 0.005682 34 41 SH9252 9252 snR6 / U6 RNA 3' 26.505075 103.244044 64.8745595 1.812074422 0.005663 15 68 SH12239 12239 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 22.773032 100.835889 22.773032 79.062857 50.9179445 1.706870863 0.005616 59 6 SH7802 7802 snoRNA cluster1 snR75 25.579017 123.288761 25.579017 98.709744 62.1443805 1.793401863 0.005615 80 51 SH16060 16060 YDL219W_4_65243_65766_INTRON_66_136 intron 23.662496 108.006692 23.662496 85.344196 54.503346 1.736423165 0.005587 37 79 SH5008 5008 snR10 snR10 71 87 36.146948 120.066265 78.1066065 1.892687769 0.005573 39 19 SH10499 10499 RUF8 RUF8 421 442 24.587724 92.105035 58.3463795 1.766013912 0.005571 188 73 SH11362 11362 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3696 3711 92.755775 201.386679 147.071227 2.167527716 0.005552 84 74 SH19617 19617 RNA14 1.1 26.136948 101.450447 63.7936975 1.804777775 0.005468 182 22 SH13507 13507 MT COX1 intronic 25.29876 121.654784 25.29876 97.356024 61.327392 1.787654496 0.005468 29 91 SH9682 9682 RUF4 RUF4 186 204 25.167814 96.42498 60.796397 1.783877842 0.005448 8 57 SH7943 7943 snoRNA cluster1 3' 22.908721 101.888417 22.908721 79.979696 51.4442085 1.71133649 0.005441 87 8 SH12311 12311 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.847967 134.101901 27.847967 107.253934 67.5509505 1.829631464 0.005431 109 102 SH2270 2270 Phe2 5' flank 24.032652 88.075242 56.053947 1.748606199 0.005428 111 102 SH2498 2498 Pro1 5' flank 23.874375 86.909064 55.3917195 1.743444847 0.00542 72 40 SH16238 16238 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 29.301196 138.495857 29.301196 110.194661 69.7479285 1.843531314 0.005416 177 47 SH913 913 Glu3 3' flank 22.831253 79.469073 51.150163 1.708847022 0.005373 12 3 SH14699 14699 MT tRNA thr2 5' 22.680271 100.149126 22.680271 78.468855 50.574563 1.703932139 0.005359 95 54 SH20463 20463 YGL183C spliced 49.998683 140.008307 95.003495 1.977739582 0.005334 27 104 SH12970 12970 MT COX1 COX1ai2 24.502518 115.006213 24.502518 91.503695 58.0031065 1.763451254 0.005323 97 91 SH21128 21128 YNL130C spliced 25.73466 99.494048 62.614354 1.796673904 0.0053 20 19 SH7165 7165 snR63 3' 26.810755 104.783842 65.7972985 1.818208063 0.005266 143 20 SH5829 5829 snR35 snR35 331 347 263.667796 443.193556 353.430676 2.548304241 0.00523 22 104 SH3830 3830 RNaseP RNaseP 116 128 26.891232 105.185495 66.0383635 1.819796302 0.005218 113 81 SH12873 12873 MT COX1 COX1ai1 24.983223 119.053617 24.983223 95.070394 60.0268085 1.778345253 0.005173 191 102 SH12506 12506 MT_tRNA Pro 3' 23.330974 105.314901 23.330974 82.983927 53.1574505 1.725564143 0.00517 103 3 SH9519 9519 RUF3 5' 24.814932 93.820226 59.317579 1.773183417 0.005161 54 8 SH12508 12508 MT_ORF6 + ORF7 (hypothetical) 5' 23.26862 104.80662 23.26862 82.538 52.90331 1.723482845 0.005157 126 72 SH19835 19835 Negative Control 26.334305 102.44502 64.3896625 1.808816149 0.005152 173 79 SH5879 5879 snR35 3' 24.106735 88.646957 56.376846 1.751100776 0.005125 202 2 SH6690 6690 snR49 5' 24.007417 87.916807 55.962112 1.747894096 0.005122 180 6 SH17476 17476 YJL001W_10_434855_435618_INTRON_66_181 intron 23.776994 108.999857 23.776994 86.222863 54.9999285 1.740362125 0.00511 182 47 SH20932 20932 YLR388W spliced 33.848682 116.886673 75.3676775 1.877185132 0.005093 53 94 SH15660 15660 YBR189W_2_604466_605466_INTRON_8_420 intron 25.142449 120.415406 25.142449 96.272957 60.707703 1.783243801 0.005059 118 91 SH12488 12488 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 3' flank 22.114516 95.907728 22.114516 74.793212 48.453864 1.685328416 0.005059 117 96 SH2229 2229 Phe1 tRNA 21 33 32.105485 114.409872 73.2576785 1.864853152 0.005035 160 31 SH9872 9872 RUF5-1 RUF5-1 166 181 26.86062 105.049945 65.9552825 1.819249585 0.005027 128 80 SH14182 14182 MT COB Exon6 22.58487 99.451746 22.58487 77.866876 50.225873 1.700927494 0.005007 64 94 SH6754 6754 snR50 5' 25.198139 96.699529 60.948834 1.784965402 0.004977 206 78 SH13971 13971 MT COB Cytbi3 23.980808 110.716125 23.980808 87.735317 55.8580625 1.747085868 0.004958 22 4 SH521 521 Cys1 5' flank 25.545326 98.602025 62.0736755 1.792907462 0.004883 23 87 SH7080 7080 snR63 5' 24.846606 94.082601 59.4646035 1.774258527 0.004876 49 10 SH16359 16359 YEL012W_5_131772_132551_INTRON_6_128 5' exon 450.483982 1152.654084 450.483982 703.170102 576.827042 2.761045612 0.004862 150 57 SH9435 9435 RUF2 RUF2 16 33 24.977881 95.06224 60.0200605 1.778296429 0.004848 17 53 SH514 514 Asp2 3' flank 26.716614 104.353522 65.535068 1.816473754 0.004845 12 44 SH21859 21859 copy of SH18009 29.686226 110.934175 70.3102005 1.847018336 0.004829 107 20 SH17904 17904 YLR061W_12_263195_263949_INTRON_13_401 intron 40.585583 166.163325 40.585583 126.577742 83.5816625 1.922111005 0.004829 139 84 SH11074 11074 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2256 2274 24.002658 87.90884 55.955749 1.747844713 0.004826 117 32 SH15885 15885 YDL082W_4_308423_309387_INTRON_5_369 intron 28.213117 135.247727 28.213117 108.03461 68.1238635 1.83329927 0.004814 56 86 SH15412 15412 YBL059C-A_2_110500_110086_INTRON_35_119 3' exon 27.838617 134.109782 27.838617 107.271165 67.554891 1.829656798 0.004792 77 28 SH7550 7550 snR79 3' 23.829992 86.640201 55.2350965 1.742215117 0.004791 132 19 SH19981 19981 YBL091C-A spliced 40.013139 125.742514 82.8778265 1.918438353 0.004764 168 32 SH587 587 Gln1 5' flank 26.955541 105.450717 66.203129 1.820878516 0.004755 203 82 SH2073 2073 Lys4 tRNA-exon/intron 31 48 22.243526 75.653605 48.9485655 1.689739969 0.00474 3 9 SH1752 1752 Leu7 tRNA 56 68 26.602512 103.799438 65.200975 1.81425409 0.004736 124 84 SH13440 13440 MT COX1 intronic 22.529166 99.053134 22.529166 77.523968 50.026567 1.699200701 0.004704 144 26 SH18769 18769 YNL246W_14_185459_186348_INTRON_33_127 intron 25.575513 123.341171 25.575513 98.765658 62.1705855 1.793584957 0.004672 167 60 SH3139 3139 Ser4 101 + 3' flank 101 22.334573 76.254506 49.2945395 1.692798814 0.004636 181 51 SH5447 5447 snR31 3' 24.93803 94.786494 59.862262 1.777153123 0.004628 14 18 SH1875 1875 Leu9 3' flank 23.344245 83.126548 53.2353965 1.726200493 0.004626 77 103 SH13001 13001 MT COX1 COX1ai2 23.5445 107.117943 23.5445 84.573443 54.0589715 1.732867779 0.004613 139 88 SH8149 8149 snoRNA cluster 3; intergenic 23.296929 105.086752 23.296929 82.789823 53.043376 1.724631157 0.004591 162 8 SH4735 4735 snR4 3' 31.09198 112.994235 72.0431075 1.857592437 0.004577 155 66 SH17198 17198 YHR021C_8_148660_147862_INTRON_4_553 intron 24.677954 116.541728 24.677954 92.863774 58.770864 1.769162075 0.004573 176 67 SH21881 21881 copy of SH18401 24.065589 88.400538 56.2330635 1.749991744 0.004547 37 78 SH13841 13841 MT COB Cytbi2 25.439071 122.550955 25.439071 98.111884 61.7754775 1.790816111 0.00452 72 12 SH604 604 Gln1 61-72 + 3' flank 61 3' flank 106.485593 221.481521 163.983557 2.214800303 0.004519 71 101 SH1151 1151 His1 5' flank 23.583656 84.874291 54.2289735 1.734231384 0.004425 134 9 SH15735 15735 YBR230C_2_680008_679507_INTRON_12_108 3' exon 25.899652 125.272084 25.899652 100.372432 63.136042 1.800277352 0.004392 19 38 SH1403 1403 Leu1 tRNA 86 102 697.666808 1031.84658 864.756694 2.936893933 0.004356 32 102 SH8849 8849 LSR1 / U2 RNA U2 886 901 264.469331 444.579224 354.5242775 2.549645981 0.004355 42 28 SH5345 5345 snR30 snR30 576 593 27.797698 107.212618 67.505158 1.829336958 0.004348 39 27 SH35 35 Ala1 tRNA + 3' flank 71 3' flank 23.434475 83.801361 53.617918 1.729309946 0.004341 121 29 SH16362 16362 YEL012W_5_131772_132551_INTRON_6_128 intron 24.550951 115.502297 24.550951 91.951346 58.2511485 1.765304492 0.004339 77 27 SH1641 1641 Leu5 tRNA-intron/exon 71 87 200.83548 355.104444 277.969962 2.443997868 0.004321 142 48 SH15313 15313 YAL003W_1_142172_143158_INTRON_81_446 intron 22.213482 96.704117 22.213482 75.490635 48.8520585 1.688882868 0.004317 180 29 SH12361 12361 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.496836 122.906307 25.496836 98.409471 61.9531535 1.792063417 0.004314 5 7 SH14893 14893 MT tRNA Ile 5' 22.546518 99.216439 22.546518 77.669921 50.1082195 1.699908971 0.004298 212 45 SH10299 10299 RUF7 RUF7 106 127 24.499258 91.577627 58.0384425 1.763715749 0.004282 17 37 SH14953 14953 MT tRNA Met tRNA / 3' 25.047806 119.688101 25.047806 95.640295 60.3440505 1.780634458 0.00428 132 67 SH16724 16724 YGL033W_7_435621_436347_INTRON_56_125 intron 22.573616 99.42397 22.573616 77.850354 50.211985 1.70080739 0.004274 61 67 SH19645 19645 SIR1 2.2 28.396219 108.438372 68.4172955 1.835165903 0.004265 21 95 SH14667 14667 MT 21S rRNA 21S rRNA4 24.160794 112.277122 24.160794 89.116328 56.638561 1.753112211 0.004258 205 65 SH2023 2023 Lys3 tRNA 61 75 71.739239 171.08557 121.4124045 2.08426306 0.004215 44 37 SH10450 10450 RUF8 RUF8 176 192 29.371737 110.406083 69.88891 1.844408267 0.004213 140 96 SH14180 14180 MT COB Exon6 22.756488 100.822352 22.756488 79.065864 50.911176 1.706813129 0.004201 91 40 SH9545 9545 RUF3 RUF3 111 128 70.263736 168.925082 119.594409 2.077710877 0.004197 159 76 SH20290 20290 YDR500C spliced 48.602324 138.080909 93.3416165 1.970075318 0.004127 151 42 SH2902 2902 Pro8 tRNA 31 43 27.255954 106.109568 66.682761 1.824013573 0.00412 97 28 SH6056 6056 snR37 snR37 196 213 27.338351 106.280392 66.8093715 1.824837386 0.004113 170 70 SH10726 10726 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 516 532 1702.873053 2286.898281 1994.885667 3.29991801 0.004089 166 64 SH11817 11817 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5971 5988 24.243816 89.73519 56.989503 1.75579487 0.004066 14 22 SH1612 1612 Leu5 5' flank 25.199595 96.804661 61.002128 1.785344985 0.004028 189 48 SH7976 7976 snoRNA cluster 2 snR57 23.861571 109.80337 23.861571 86.941799 55.401685 1.743522974 0.004025 17 62 SH8015 8015 snoRNA cluster 2 intergenic 24.340432 113.784517 24.340432 90.444085 57.3922585 1.758853315 0.003995 138 20 SH19793 19793 Negative Control 26.84337 105.051126 65.947248 1.819196677 0.003978 67 56 SH3323 3323 Thr3 5' flank 24.909043 94.634593 59.771818 1.776496465 0.00397 54 100 SH21295 21295 YPL198W spliced 28.469677 108.605042 68.5373595 1.835927369 0.003959 69 46 SH13553 13553 MT COX1 intronic 25.4075 122.408863 25.4075 98.001363 61.7044315 1.790316355 0.003956 63 21 SH17216 17216 YHR041C_8_189855_189122_INTRON_15_115 5' exon 26.925487 131.361868 26.925487 105.436381 66.180934 1.820732892 0.003894 201 19 SH6748 6748 snR50 5' 27.651341 106.938 67.2946705 1.827980671 0.003892 136 77 SH6922 6922 snR58 5' 23.955054 87.643016 55.799035 1.746626688 0.003891 77 61 SH14680 14680 MT 21S rRNA 21S rRNA4 23.451394 106.415041 23.451394 83.963647 53.7075205 1.730035103 0.003885 205 68 SH6553 6553 snR46 3' 25.256617 97.253934 61.2552755 1.787143497 0.003834 210 6 SH2946 2946 Ser1 5' flank 24.85355 94.235081 59.5443155 1.774840307 0.003832 102 43 SH11333 11333 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3551 3569 32.260933 114.696828 73.4788805 1.866162531 0.0038 196 42 SH2451 2451 Phe5 tRNA-exon/intron 26 42 28.683167 109.047078 68.8651225 1.837999324 0.003789 66 65 SH11112 11112 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2446 2464 36.747349 121.056828 78.9020885 1.897088499 0.003787 42 73 SH9397 9397 RUF1 3' 22.682147 78.606 50.6440735 1.70452863 0.003785 42 48 SH19013 19013 YOR182C_15_678792_678190_INTRON_4_414 intron 26.496708 128.852924 26.496708 103.356216 64.926462 1.812421738 0.00377 164 19 SH5919 5919 snR36 snR36 51 70 21.791392 72.821926 47.306659 1.674922277 0.003764 92 79 SH4555 4555 U3b (snR17b) U3b 331 348 24.62417 92.54434 58.584255 1.767780911 0.003763 141 67 SH2241 2241 Phe1 81-92 + 3' flank 81 98 23.157633 81.869529 52.513581 1.720271635 0.003704 108 25 SH10378 10378 RUF7 3' 26.831987 105.018113 65.92505 1.819050468 0.003695 137 74 SH7499 7499 snR71 3' 25.814324 100.011844 62.913084 1.798740975 0.003663 144 44 SH16754 16754 YGL076C_7_365994_364333_INTRON_565_1032 intron/exon 24.402643 114.33478 24.402643 90.932137 57.66739 1.760930296 0.003627 211 60 SH16122 16122 YDR064W_4_579453_580447_INTRON_22_560 intron 24.164415 112.366326 24.164415 89.201911 56.683163 1.753454076 0.003608 26 14 SH20185 20185 YDL191W spliced 32.657762 115.264443 73.9611025 1.869003376 0.003579 44 67 SH13103 13103 MT COX1 COX1ai3 24.889053 118.413263 24.889053 94.52421 59.7066315 1.77602257 0.003573 87 71 SH9637 9637 RUF4 5' 24.774623 93.676768 59.2256955 1.772510169 0.003547 172 89 SH11088 11088 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2326 2342 68.188705 166.042687 117.115696 2.068615104 0.003526 148 58 SH9383 9383 RUF1 RUF1 491 508 48.126588 137.453093 92.7898405 1.967500428 0.003523 203 19 SH13390 13390 MT COX1 intronic 25.065529 119.913301 25.065529 95.847772 60.4566505 1.781444082 0.003519 34 27 SH14528 14528 MT 21S rRNA 21S rRNA3 24.958591 119.009183 24.958591 95.050592 60.0045915 1.778184483 0.003491 160 34 SH18962 18962 YOL127W_15_80347_81189_INTRON_14_427 intron 24.453679 114.773886 24.453679 91.320207 57.886943 1.762580615 0.003468 157 32 SH10441 10441 RUF8 RUF8 131 147 29.116089 109.938041 69.527065 1.842153897 0.003462 146 99 SH2964 2964 Ser1 tRNA 51 63 28.070713 107.821972 67.9463425 1.832166084 0.003458 183 78 SH11807 11807 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5921 5938 7316.627334 8232.581059 7774.604197 3.890678288 0.003447 100 86 SH10092 10092 RUF6 RUF6 306 325 23.843808 86.865063 55.3544355 1.743152426 0.003432 77 95 SH15723 15723 YBR255C-A_2_727032_726576_INTRON_64_157 intron 28.039333 134.799124 28.039333 107.759791 67.899562 1.831866973 0.003425 95 44 SH16568 16568 YER133W_5_432491_433954_INTRON_178_702 intron 23.936559 110.485778 23.936559 87.549219 55.742889 1.746189473 0.003424 160 41 SH16091 16091 YDR025W_4_491510_492319_INTRON_46_384 intron 24.455766 114.796728 24.455766 91.340962 57.898364 1.762666292 0.003409 7 18 SH8769 8769 LSR1 / U2 RNA U2 486 498 49.411024 139.305772 94.358398 1.974780559 0.003388 63 84 SH5817 5817 snR35 snR35 271 287 35.015285 118.633411 76.824348 1.885498883 0.003318 43 24 SH21663 21663 copy of SH9193 23.303129 82.94561 53.1243695 1.725293789 0.003307 47 39 SH7130 7130 snR63 snR63 156 170 31.150526 113.148388 72.149457 1.858233067 0.003294 193 32 SH19203 19203 YPL081W_16_404945_406039_INTRON_8_508 intron 24.337426 113.825341 24.337426 90.487915 57.4126705 1.759007748 0.003287 46 98 SH1502 1502 Leu3 5' flank 31.341619 113.422514 72.3820665 1.859630978 0.003286 139 31 SH13366 13366 MT COX1 intronic 22.877083 101.820886 22.877083 79.943803 51.410443 1.711051346 0.003268 68 34 SH14838 14838 MT tRNA Asp 5' / tRNA Asp 28.430662 135.997122 28.430662 108.56646 68.498561 1.835681448 0.003255 197 48 SH21476 21476 copy of SH1443 26.497414 103.401455 64.9494345 1.812575374 0.003255 2 19 SH7249 7249 snR65 snR65 21 40 30.085645 111.606415 70.84603 1.850315519 0.003254 115 61 SH3369 3369 Thr4 5' flank 33.219593 116.092133 74.655863 1.87306392 0.003232 66 86 SH1240 1240 Ile1 3' flank 25.990649 100.910328 63.4504885 1.80243497 0.00323 26 85 SH14054 14054 MT COB Cytbi4 25.36204 122.198159 25.36204 97.836119 61.5990795 1.789574222 0.003222 173 2 SH16111 16111 YDR064W_4_579453_580447_INTRON_22_560 intron 23.360796 105.729184 23.360796 83.368388 53.364592 1.727253193 0.003217 18 86 SH17175 17175 YHR021C_8_148660_147862_INTRON_4_553 intron 726.847551 1796.470192 726.847551 1070.622641 898.735096 2.953631701 0.003192 105 39 SH6370 6370 snR43 snR43 91 109 25.757392 99.771294 62.764343 1.797712987 0.003176 93 86 SH2789 2789 Pro6 tRNA-exon/intron 36 48 26.321716 102.543911 64.4328135 1.809107096 0.003152 199 68 SH20035 20035 YBR186W spliced 27.293577 106.242021 66.767799 1.82456706 0.003152 102 55 SH19028 19028 YOR182C_15_678792_678190_INTRON_4_414 intron 22.752738 100.878363 22.752738 79.125625 50.9391815 1.707051962 0.00314 65 48 SH19673 19673 SIR1 2.4 25.159346 96.59018 60.874763 1.784437283 0.003136 8 45 SH15764 15764 YCR031C_3_178212_177492_INTRON_8_314 3' exon 25.866742 125.180724 25.866742 100.313982 63.090362 1.799963019 0.003086 167 71 SH17427 17427 YIL133C_9_99416_98527_INTRON_32_321 5' exon 26.187701 127.080225 26.187701 101.892524 64.0401125 1.806452086 0.003052 89 93 SH17441 17441 YIL133C_9_99416_98527_INTRON_32_321 intron 25.879776 125.263932 25.879776 100.384156 63.131966 1.800249314 0.003007 63 20 SH20925 20925 YLR367W spliced 27.118278 105.887731 66.5030045 1.822841266 0.002991 37 67 SH5128 5128 snR11 snR11 241 257 29.922674 111.385831 70.6542525 1.849138306 0.002908 180 45 SH13065 13065 MT COX1 intronic 19473.73699 38943.95156 19473.73699 19471.21457 19472.47578 4.289421172 0.002883 92 86 SH8449 8449 snoRNA cluster 5 snR128 24.371654 114.148882 24.371654 90.777228 57.574441 1.76022973 0.002861 196 81 SH4645 4645 snR3 snR3 141 158 23.815761 86.711076 55.2634185 1.742437746 0.002857 130 27 SH12061 12061 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7191 7206 77.016577 178.835865 127.926221 2.106959571 0.002855 201 103 SH8205 8205 snoRNA cluster 3; intergenic/snR51 23.525591 107.118629 23.525591 84.593038 54.0593145 1.732870534 0.002841 91 91 SH1910 1910 Lys1 tRNA 6 18 52.360442 143.542125 97.9512835 1.991010131 0.002835 203 46 SH7186 7186 snR64 5' - 12 -4 12 33.449545 116.446065 74.947805 1.874758918 0.002821 188 47 SH5277 5277 snR30 snR30 236 252 23.837752 86.878536 55.358144 1.743181521 0.002793 164 34 SH4882 4882 snR8 3' 22.428747 77.013405 49.721076 1.696540519 0.002791 173 95 SH20824 20824 YKR057W spliced 23.637592 85.413589 54.5255905 1.736600378 0.002778 187 58 SH14642 14642 MT 21S rRNA intronic 22.711093 100.590605 22.711093 78.879512 50.7953025 1.705823551 0.002758 87 77 SH11142 11142 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2596 2609 71.744916 171.235023 121.4899695 2.084540423 0.002739 84 55 SH19063 19063 YOR293W_15_867094_867848_INTRON_53_489 5' exon 46.526494 180.775369 46.526494 135.248875 90.8876845 1.958505039 0.002715 183 34 SH10805 10805 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 911 929 16347.68845 16695.30593 16521.49719 4.218049401 0.002686 151 48 SH3609 3609 Val1 tRNA 41 53 30.958758 112.905965 71.9323615 1.856924318 0.002684 156 12 SH17603 17603 YJL205C-A_10_50443_50139_INTRON_33_175 intron 22.730508 100.749029 22.730508 79.018521 50.8745145 1.706500278 0.002631 78 37 SH1959 1959 Lys2 5' flank - tRNA11 11 33.694198 116.807892 75.251045 1.876512535 0.002618 106 10 SH2870 2870 Pro7 3' flank 24.445974 91.346491 57.8962325 1.762650304 0.002585 74 60 SH6891 6891 snR56 86-88 + 3' 86 23.108897 81.620435 52.364666 1.719038338 0.002552 192 59 SH20751 20751 YJR021C spliced 27.772513 107.263402 67.5179575 1.829419296 0.002548 145 46 SH15494 15494 YBL092W_2_45639_46364_INTRON_1_333 intron 24.367561 114.145087 24.367561 90.777526 57.5725435 1.760215417 0.002537 148 49 SH16586 16586 YFL034C-A_6_64931_64242_INTRON_13_333 intron 38.892536 162.171591 38.892536 124.279055 81.5857955 1.911614552 0.002521 145 51 SH17232 17232 YHR077C_8_255757_252375_INTRON_7_119 intron 22.34663 97.843444 22.34663 76.496814 49.421722 1.693917873 0.002514 114 19 SH16137 16137 YDR092W_4_629869_630598_INTRON_31_298 5' exon 28.631292 136.648762 28.631292 109.01747 68.824381 1.837742314 0.002488 146 15 SH18764 18764 YNL246W_14_185459_186348_INTRON_33_127 5' exon 26.872657 131.192249 26.872657 105.319592 66.0961245 1.820175996 0.002481 184 29 SH19450 19450 CYC1 28.274771 108.294564 68.2846675 1.834323199 0.002473 110 37 SH7598 7598 snR189 snR189 61 75 46.462514 135.174618 90.818566 1.95817464 0.002471 21 25 SH18531 18531 YMR230W_13_732413_733140_INTRON_53_462 5' exon 36.320956 155.821547 36.320956 120.500591 78.4107735 1.894375738 0.00246 121 35 SH15446 15446 YBL087C_2_60732_59815_INTRON_43_546 intron 24.472366 115.02652 24.472366 91.554154 58.01326 1.763527271 0.002433 91 45 SH5171 5171 snR13 snR13 11 32 21.781249 72.856594 47.3189215 1.675034838 0.00241 189 68 SH9501 9501 RUF2 3' 25.823039 100.153652 62.9883455 1.799260201 0.002401 191 27 SH11485 11485 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4311 4328 259.103527 437.534591 348.319059 2.541977238 0.002343 62 65 SH6023 6023 snR37 snR37 31 53 23.404408 83.763993 53.5842005 1.729036755 0.00229 32 96 SH6733 6733 snR49 3' 26.675921 104.362198 65.5190595 1.816367655 0.002283 135 15 SH15190 15190 MT COX3 cox3 24.398172 114.42457 24.398172 91.026398 57.712285 1.76126827 0.002267 160 95 SH13202 13202 MT COX1 Exon4 28.703331 136.879627 28.703331 109.176296 68.9398135 1.838470104 0.002262 76 83 SH21158 21158 YNL301C spliced 24.386792 90.946725 57.6667585 1.76092554 0.002229 208 42 SH17228 17228 YHR077C_8_255757_252375_INTRON_7_119 exon/intron 24.538291 115.597199 24.538291 92.058908 58.2985995 1.765658122 0.002214 82 17 SH8411 8411 snoRNA cluster 5 snR190 22.934607 102.348637 22.934607 80.41403 51.6743185 1.713274758 0.002212 140 47 SH6577 6577 snR47 5' - 8 -9 8 24.187566 89.500042 56.843804 1.754683133 0.002186 56 67 SH5110 5110 snR11 snR11 151 165 28.597626 108.967622 68.782624 1.83747874 0.002171 117 28 SH5329 5329 snR30 snR30 496 512 24.458795 91.480406 57.9696005 1.763200307 0.002159 177 28 SH18053 18053 YLR333C_12_796335_795573_INTRON_1_423 intron 25.038446 119.818005 25.038446 95.779559 60.4090025 1.781101665 0.002147 110 76 SH19154 19154 YPL075W_16_412249_415357_INTRON_9_759 intron 29.148985 138.229991 29.148985 110.081006 69.6149955 1.842702799 0.002144 154 70 SH12993 12993 MT COX1 COX1ai2 24.714993 117.085507 24.714993 93.370514 59.0427535 1.771166603 0.002134 186 6 SH10235 10235 RUF6 RUF6 1021 1038 24.275105 90.141903 57.208504 1.757460591 0.002123 118 29 SH16474 16474 YER102W_5_362729_363698_INTRON_1_360 intron 28.263645 135.557546 28.263645 108.293901 68.278773 1.834285708 0.00209 130 23 SH3895 3895 RNaseP 3' 23.541433 84.775346 54.1583895 1.733665741 0.002082 148 79 SH17137 17137 YHR010W_8_126513_127484_INTRON_32_592 intron 23.207721 104.575356 23.207721 82.367635 52.787678 1.722532559 0.002075 191 89 SH17743 17743 YKL157W_11_154993_158183_INTRON_282_664 5' exon 26.675139 130.051958 26.675139 104.376819 65.525979 1.816413518 0.002058 68 88 SH17429 17429 YIL133C_9_99416_98527_INTRON_32_321 intron 24.36557 114.17435 24.36557 90.80878 57.587175 1.760325774 0.002045 77 72 SH16271 16271 YDR447C_4_1355542_1354818_INTRON_4_317 intron 121.551755 363.986778 121.551755 243.435023 182.493389 2.261247136 0.002037 65 40 SH6855 6855 snR56 5' 28.618767 109.018693 68.81873 1.837706654 0.002028 149 31 SH5162 5162 snR13 5' 23.444666 84.085027 53.7648465 1.73049841 0.00195 192 28 SH9238 9238 snR6 / U6 RNA U6 61 73 30.857834 112.801697 71.8297655 1.856304449 0.001927 55 44 SH20186 20186 YDL191W spliced 37.948747 122.944516 80.4466315 1.905507864 0.00192 45 98 SH3343 3343 Thr3 61-72 + 3' flank 61 124.489216 247.625033 186.0571245 2.269646305 0.001877 81 34 SH195 195 Arg2 3' flank 23.907936 87.483168 55.695552 1.745820513 0.001837 7 48 SH8679 8679 LSR1 / U2 RNA U2 36 53 23.786567 86.589664 55.1881155 1.741845565 0.001829 73 19 SH4176 4176 telomerase RNA 5' 25.147687 96.63256 60.8901235 1.784546855 0.001823 65 92 SH20902 20902 YLR306W spliced 23.742429 86.266448 55.0044385 1.740397736 0.00182 37 87 SH16853 16853 YGL183C_7_157071_156547_INTRON_4_86 intron 39.401081 163.456185 39.401081 125.055104 82.2280925 1.915020216 0.001813 82 60 SH15063 15063 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.340547 128.087234 26.340547 102.746687 64.543617 1.809853299 0.001787 122 11 SH12709 12709 MT ORF 8 (hypothetical) ORF8 24.827069 118.064215 24.827069 94.237146 59.5321075 1.774751257 0.001774 127 36 SH2358 2358 Phe3 3' flank 23.02468 81.087913 52.0562965 1.716473267 0.001764 5 18 SH6716 6716 snR49 snR49 106 125 25.648924 99.351325 62.5001245 1.795880882 0.001754 66 68 SH18274 18274 YML056C_13_164176_162194_INTRON_461_868 intron 22.664942 100.318639 22.664942 78.653697 50.6593195 1.704659352 0.001746 129 52 SH21701 21701 copy of SH10876 1063.797569 1503.316874 1283.557222 3.108415234 0.00172 88 32 SH7784 7784 snoRNA cluster1 intergenic 22.567456 99.578937 22.567456 78.011481 50.2894685 1.701477046 0.001707 22 79 SH17796 17796 YKL186C_11_93537_92746_INTRON_71_233 intron/exon 24.631264 116.42412 24.631264 92.792856 58.71206 1.768727319 0.0017 55 72 SH20984 20984 YML067C spliced 27.084251 105.88986 66.4870555 1.8227371 0.001696 213 101 SH9227 9227 snR6 / U6 RNA U6 6 20 25.720931 99.709074 62.7150025 1.797371444 0.001689 125 66 SH826 826 Glu1 3' flank 23.207383 82.400722 52.8040525 1.722667254 0.001663 84 61 SH19592 19592 AEP2/ATP13 2.1 22.29894 76.251772 49.275356 1.692629771 0.001647 177 52 SH8705 8705 LSR1 / U2 RNA U2 166 181 27.901371 107.57916 67.7402655 1.830846894 0.001646 41 62 SH13414 13414 MT COX1 intronic 23.417296 106.331079 23.417296 83.913783 53.6655395 1.7296955 0.001645 79 16 SH13305 13305 MT COX1 COX1-ai5a 23.905765 110.390707 23.905765 87.484942 55.6953535 1.745818965 0.001642 86 90 SH9135 9135 snR7 U5 RNA 5' 23.910019 87.51806 55.7140395 1.745964648 0.001624 84 5 SH12415 12415 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.615365 123.813305 25.615365 99.19794 62.4066525 1.795230888 0.001614 26 104 SH14625 14625 MT 21S rRNA Sce1 endonuc 24.587376 116.064768 24.587376 92.477392 58.532384 1.767396213 0.001612 174 79 SH17001 17001 YGR118W_7_726968_727725_INTRON_66_385 intron/exon 23.988488 111.088661 23.988488 88.100173 56.0443305 1.748531685 0.001609 139 62 SH9358 9358 RUF1 RUF1 366 385 24.364673 90.847482 57.6060775 1.760468304 0.001559 191 93 SH2264 2264 Phe2 5' flank 32.249513 114.806845 73.528179 1.86645381 0.001528 197 36 SH10374 10374 RUF7 RUF7 481 495 28.720103 109.253804 68.9869535 1.838766967 0.00151 102 58 SH4378 4378 telomerase RNA telomerase 926 940 48.990861 138.834921 93.912891 1.97272521 0.001509 117 57 SH323 323 Arg5 5' flank 23.874955 87.271322 55.5731385 1.744864924 0.00149 134 74 SH10320 10320 RUF7 RUF7 211 225 67.984823 165.937779 116.961301 2.06804219 0.001485 34 83 SH3433 3433 Trp1 5' flank - tRNA10 10 588.966288 890.693628 739.829958 2.869131913 0.001478 14 74 SH18877 18877 YNR053C_14_723108_721117_INTRON_811_1341 intron 25.129887 120.663315 25.129887 96.533428 60.8316575 1.78412965 0.001471 167 59 SH14350 14350 MT ORF9 and ORF10 (hypothetical) 5' 22.368651 98.090671 22.368651 76.72202 49.5453355 1.695002774 0.001466 5 63 SH7913 7913 snoRNA cluster1 intergenic/snR72 24.164523 112.567467 24.164523 89.402944 56.7837335 1.754223944 0.001423 81 4 SH6070 6070 snR37 snR37 266 285 23.247596 82.71142 52.979508 1.724107921 0.001406 14 95 SH1656 1656 Leu5 3' flank 26.927568 105.580168 66.253868 1.821211238 0.001404 22 86 SH10181 10181 RUF6 RUF6 751 763 64.200169 160.473699 112.336934 2.050522567 0.001392 50 6 SH18134 18134 YLR406C_12_931752_931062_INTRON_58_406 intron 23.231847 104.832226 23.231847 82.600379 52.916113 1.723587935 0.001383 184 71 SH744 744 Gln4 5' flank - tRNA12 12 27.692731 107.166072 67.4294015 1.828849305 0.001377 66 100 SH6187 6187 snR40 5' - 13 -4 13 182.383794 329.720157 256.0519755 2.408328131 0.001374 107 72 SH4629 4629 snR3 snR3 61 77 24.148904 89.296106 56.722505 1.753755402 0.001353 53 9 SH19356 19356 YPL249C-A_16_76239_75699_INTRON_17_254 intron 23.111941 103.859303 23.111941 81.747362 52.4296515 1.719576971 0.001321 175 37 SH21266 21266 YPL081W spliced 31.579984 113.871808 72.725896 1.861689081 0.0013 84 9 SH7251 7251 snR65 snR65 31 48 25.818493 100.218718 63.0186055 1.799468789 0.00129 168 38 SH4513 4513 U3b (snR17b) U3b 121 138 24.708496 93.403421 59.0559585 1.771263723 0.001289 98 17 SH6236 6236 snR42 5' 23.946103 87.817287 55.881695 1.747269571 0.001271 28 66 SH21079 21079 YMR230W spliced 31.27911 113.444179 72.3616445 1.859508428 0.00126 147 90 SH10323 10323 RUF7 RUF7 226 243 24.739319 93.635253 59.187286 1.772228426 0.001254 93 8 SH10024 10024 RUF6 5' 30.342472 112.090222 71.216347 1.852579693 0.001253 208 82 SH9910 9910 RUF5-1 RUF5-1 356 374 24.32118 90.561179 57.4411795 1.759223349 0.001222 166 78 SH19424 19424 YPR132W_16_794960_795762_INTRON_66_430 intron 24.596169 116.178037 24.596169 92.581868 58.5890185 1.767816223 0.001194 144 96 SH6879 6879 snR56 snR56 26 40 47.378571 136.566605 91.972588 1.963658407 0.001175 184 8 SH6499 6499 snR46 5' - 3 -14 3 30.64047 112.528404 71.584437 1.854818614 0.001169 102 49 SH2252 2252 Phe1 3' flank 26.358251 102.885322 64.6217865 1.81037896 0.00115 125 76 SH14720 14720 MT tRNA cys; tRNA his tRNA Cys 26.569272 129.497638 26.569272 103.928366 65.248819 1.814572655 0.00114 51 85 SH20899 20899 YLR306W spliced 22.784583 79.498203 51.141393 1.708772553 0.001134 152 20 SH3861 3861 RNaseP RNaseP 271 283 30.451744 112.257187 71.3544655 1.853421157 0.001111 96 101 SH13700 13700 MT tRNAGlu (and 5' processing site for COB) 5' 23.670744 108.47651 23.670744 85.805766 54.738255 1.738290948 0.001104 40 51 SH2399 2399 Phe4 tRNA-intron/exon 46 60 28.524783 108.881761 68.703272 1.836977421 0.001102 106 92 SH2431 2431 Phe5 5' flank 24.834582 94.36124 59.597911 1.775231037 0.001069 38 97 SH21616 21616 copy of SH7317 23.762061 86.479066 55.1205635 1.741313649 0.001062 26 86 SH8201 8201 snoRNA cluster 3; intergenic 31.739741 144.852699 31.739741 114.112958 72.9263495 1.862884474 0.001048 33 5 SH20531 20531 YGR148C spliced 26.611723 104.147273 65.379498 1.815441582 0.00103 194 36 SH10858 10858 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1176 1194 26.41667 103.18368 64.800175 1.811576179 0.001026 24 14 SH1274 1274 Ile2 tRNA-intron 66 82 31.065392 113.151697 72.1085445 1.857986729 0.000997 192 84 SH8413 8413 snoRNA cluster 5 snR190 30.558269 141.978253 30.558269 112.419984 71.4891265 1.854239991 0.000967 186 96 SH111 111 Arg1 5' flank 24.390625 91.09369 57.7421575 1.761493007 0.000955 167 80 SH1242 1242 Ile2 5' flank 26.696119 104.571456 65.6337875 1.817127467 0.00095 11 48 SH18435 18435 YMR142C_13_551206_550205_INTRON_5_406 intron 26.56319 129.477115 26.56319 103.913925 65.2385575 1.81450435 0.000948 211 39 SH8040 8040 snoRNA cluster 2 intergenic 24.216803 113.04398 24.216803 89.827177 57.02199 1.75604237 0.000937 118 53 SH19499 19499 YPT1 31.201194 113.351392 72.276293 1.85899587 0.000914 53 55 SH19434 19434 YPR132W_16_794960_795762_INTRON_66_430 intron/exon 25.681424 124.257816 25.681424 99.576392 62.628908 1.796774839 0.00091 44 54 SH4441 4441 telomerase RNA telomerase 1241 1260 22.871439 80.098126 51.4847825 1.711678882 0.000889 102 64 SH7142 7142 snR63 snR63 216 231 43.967321 131.676493 87.821907 1.943602863 0.000888 197 44 SH17619 17619 YJR021C_10_469271_468247_INTRON_317_396 3' exon 26.551557 129.413011 26.551557 103.861454 65.2065055 1.814290926 0.000886 111 45 SH8831 8831 LSR1 / U2 RNA U2 796 813 25.219126 97.265973 61.2425495 1.787053262 0.000875 80 68 SH10515 10515 RUF8 RUF8 501 523 24.46851 91.674692 58.071601 1.763963799 0.00085 61 95 SH3639 3639 Val2 5' flank 24.729185 93.600901 59.165043 1.772065184 0.000829 207 91 SH1037 1037 Gly3 5' flank 22.343838 76.608705 49.4762715 1.694396964 0.000829 62 99 SH8530 8530 snR19 / U1 RNA U1 146 160 26.167887 101.973816 64.0708515 1.806660496 0.000816 135 27 SH818 818 Glu1 3' flank 24.446633 91.517849 57.982241 1.763294997 0.00081 126 91 SH11504 11504 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4406 4423 483.558391 749.898477 616.728434 2.790093972 0.000796 79 42 SH17108 17108 YHR001W-A_8_107819_108115_INTRON_7_69 exon/intron 41.449944 168.547103 41.449944 128.097159 84.7735515 1.928260378 0.000777 13 29 SH4069 4069 SRP RNA SRP RNA 236 250 29.247423 110.359193 69.803308 1.843876004 0.000766 20 30 SH21660 21660 copy of SH9190 22.318829 76.451102 49.3849655 1.693594755 0.000749 79 92 SH13279 13279 MT COX1 Exon 5a 24.164778 112.632274 24.164778 89.467496 56.816137 1.754471702 0.000739 69 3 SH4711 4711 snR4 snR4 91 108 23.081123 81.579454 52.3302885 1.718753129 0.000712 158 82 SH12180 12180 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7786 7804 25.158341 96.828502 60.9934215 1.785282996 0.000658 154 57 SH14327 14327 MT VAR1 includes 5’ processing site VAR1 22.826669 101.644988 22.826669 79.818319 51.322494 1.710307753 0.000646 4 30 SH8646 8646 snR19 / U1 RNA 3' 23.755355 86.47208 55.1137175 1.741259706 0.000595 156 104 SH2320 2320 Phe3 5' flank 24.729332 93.627953 59.1786425 1.772164999 0.000559 102 85 SH6038 6038 snR37 snR37 106 120 54.038532 146.097368 100.06795 2.000295003 0.000547 196 44 SH20803 20803 YKL180W spliced 26.485543 103.563475 65.024509 1.813077082 0.000538 52 27 SH19035 19035 YOR234C_15_779404_778554_INTRON_20_546 intron 45.298667 177.935931 45.298667 133.637264 89.4679655 1.951667562 0.000529 169 45 SH4838 4838 snR8 5' 22.525975 77.8311 50.1785375 1.700517999 0.000517 4 87 SH16180 16180 YDR305C_4_1073479_1072737_INTRON_88_176 3' exon 27.844741 134.372473 27.844741 107.527732 67.6862365 1.830500367 0.000512 40 2 SH8987 8987 snR17a / U3a U3a 221 237 31.462697 113.748328 72.6055125 1.860969595 0.000504 53 61 SH10546 10546 RUF8 RUF8 656 678 22.929611 80.520276 51.7249435 1.713700025 0.000496 113 22 SH3060 3060 Ser3 5' flank - tRNA11 11 595.920996 900.50381 748.212403 2.874024903 0.000481 144 70 SH13095 13095 MT COX1 COX1ai3 26.569993 129.555665 26.569993 103.985672 65.2778325 1.814765726 0.000481 163 76 SH3041 3041 Ser3 5' flank 38.972694 124.523734 81.748214 1.912478273 0.00046 155 28 SH7417 7417 snR69 5' - 7 -14 7 23.044992 81.343405 52.1941985 1.717622233 0.000459 70 64 SH5525 5525 snR33 5' 72.013625 171.846075 121.92985 2.08611004 0.000458 165 29 SH14319 14319 MT VAR1 includes 5’ processing site VAR1 24.766016 117.676705 24.766016 93.910689 59.3383525 1.773335484 0.000452 148 98 SH8047 8047 snoRNA cluster 2 intergenic 24.572123 116.049955 24.572123 92.477832 58.5249775 1.767341255 0.000421 83 59 SH20666 20666 YIL069C spliced 28.522584 108.917444 68.720014 1.837083239 0.000407 133 87 SH865 865 Glu2 3' flank 23.168277 82.228925 52.698601 1.721799086 0.000404 182 53 SH17984 17984 YLR275W_12_694378_694800_INTRON_6_95 exon/intron 22.773969 101.261464 22.773969 79.487495 51.130732 1.70868201 0.000385 116 64 SH20767 20767 YKL002W spliced 48.957285 138.868709 93.912997 1.9727257 0.000375 10 51 SH10830 10830 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1036 1054 671.355995 1000.072916 835.7144555 2.922057914 0.000369 62 72 SH9839 9839 RUF5-1 RUF5-1 1 22 22.143158 75.335495 48.7393265 1.687879524 0.00035 165 91 SH15256 15256 MT 9S rRNA 5' 23.982117 111.151573 23.982117 88.169456 56.0757865 1.748775374 0.000345 211 11 SH16224 16224 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 23.297419 105.460777 23.297419 83.163358 53.2303885 1.726159636 0.000329 213 82 SH15706 15706 YBR220C_2_663261_662457_INTRON_302_722 intron 24.093398 112.08281 24.093398 88.989412 56.541405 1.752366596 0.00031 102 37 SH12499 12499 MT_tRNA Pro tRNA 41.559194 168.84679 41.559194 128.287596 84.923395 1.929027348 0.000281 78 62 SH16616 16616 YFL039C_6_54695_53260_INTRON_11_318 intron 27.408528 133.052862 27.408528 106.644334 67.026431 1.826246095 0.00024 114 24 SH80 80 Ala2 36-51 36 51 1232.243353 1716.720674 1474.482014 3.168639479 0.000217 88 72 SH2327 2327 Phe3 5' flank 26.72112 104.757497 65.7393085 1.817825132 0.000192 133 30 SH4981 4981 snR10 5' 23.844996 87.169148 55.507072 1.744348319 0.000187 60 33 SH16319 16319 YDR471W_4_1401759_1402553_INTRON_32_415 intron 367.413164 957.382218 367.413164 590.969054 479.191109 2.680508751 0.000181 104 49 SH19 19 Ala1 5' flank - tRNA7 5' flank 7 80.422872 184.079561 132.2512165 2.121399676 0.000178 3 85 SH5837 5837 snR35 snR35 371 385 34.790087 118.502747 76.646417 1.884491858 0.000137 141 54 SH10708 10708 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 426 441 70.086788 169.051958 119.569373 2.077619952 0.000091 182 25 SH10173 10173 RUF6 RUF6 711 723 36.163896 120.413097 78.2884965 1.893697953 0.000073 147 12 SH16440 16440 YER074W_5_306319_307192_INTRON_4_469 intron 26.976994 131.735285 26.976994 105.758291 66.3676425 1.821956391 0.000065 112 48 SH10175 10175 RUF6 RUF6 721 733 26.814241 105.231843 66.023042 1.81969553 0.000038 106 37 SH7613 7613 snR189 snR189 136 155 23.534212 84.905483 54.2198475 1.734158292 0.000024 162 33 SH17241 17241 YHR079C-A_8_262554_262193_INTRON_114_199 intron 22.447615 98.801459 22.447615 77.353844 49.9007295 1.698106895 0.000012 16 22 SH12302 12302 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.989176 131.776364 26.989176 105.787188 66.388182 1.822090776 0.000002 134 65 SH13548 13548 MT COX1 intronic 25.151178 120.991573 25.151178 96.840395 60.9957865 1.785299836 -0.000006 83 33 SH21524 21524 copy of SH3559 48.312471 137.968674 93.1405725 1.969138903 -0.000065 54 18 SH15770 15770 YCR097W_3_293828_294314_INTRON_106_159 intron 24.878433 118.676912 24.878433 94.798479 59.838456 1.776980379 -0.000066 112 37 SH9139 9139 snR7 U5 RNA 5' 20.869933 67.427003 44.148468 1.644915638 -0.000085 23 9 SH2536 2536 Pro2 5' flank 31.92268 114.435694 73.179187 1.86438758 -0.000098 33 17 SH849 849 Glu2 tRNA 11 27 4350.706864 5230.419744 4790.563304 3.680386583 -0.000124 153 48 SH21591 21591 copy of SH6252 242.13986 414.244813 328.1923365 2.516128436 -0.000164 206 11 SH7910 7910 snoRNA cluster1 intergenic 23.651491 108.430186 23.651491 85.778695 54.715093 1.738107142 -0.000165 142 10 SH3865 3865 RNaseP RNaseP 291 303 66.531186 164.000162 115.265674 2.061699994 -0.000168 4 26 SH5706 5706 snR34 snR34 451 473 26.130257 101.868257 63.999257 1.806174932 -0.000182 31 36 SH6482 6482 snR46 5' 22.82125 79.84974 51.335495 1.710417754 -0.000194 153 9 SH4323 4323 telomerase RNA telomerase 651 669 22.998088 81.065583 52.0318355 1.716269147 -0.000202 169 22 SH12222 12222 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.712703 108.945116 23.712703 86.232413 54.972558 1.740145946 -0.00022 170 19 SH3550 3550 Tyr2 tRNA 21 36 81.430941 185.578798 133.5048695 2.125497107 -0.000227 49 24 SH17180 17180 YHR021C_8_148660_147862_INTRON_4_553 intron 27.190752 132.411115 27.190752 106.220363 66.7055575 1.824162018 -0.000244 111 52 SH9674 9674 RUF4 RUF4 146 161 27.027309 105.881299 66.454304 1.822523114 -0.000259 101 60 SH5735 5735 snR34 3' 25.107397 96.535895 60.821646 1.784058169 -0.000265 208 5 SH12024 12024 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7006 7024 23.842798 87.19415 55.518474 1.74443752 -0.000265 72 50 SH21610 21610 copy of SH7091 23.561603 85.13326 54.3474315 1.735179024 -0.000292 195 61 SH16830 16830 YGL178W_7_167356_170575_INTRON_4_643 intron 23.844093 110.052138 23.844093 87.208045 55.526069 1.744496928 -0.000312 78 96 SH2453 2453 Phe5 tRNA-exon/intron 36 53 29.71943 111.260196 70.489813 1.848126358 -0.000327 147 62 SH7418 7418 snR69 5' - 12 -9 12 22.880515 80.260069 51.570292 1.71239959 -0.000361 135 53 SH8581 8581 snR19 / U1 RNA U1 401 413 1771.484171 2375.472521 2073.478346 3.316699504 -0.000407 14 65 SH2875 2875 Pro7 3' flank 22.469471 77.532741 50.001106 1.698979611 -0.000434 113 29 SH185 185 Arg2 41-57 41 57 64.998174 161.801298 113.399736 2.054612043 -0.00044 97 70 SH2284 2284 Phe2 tRNA 16 28 71.024699 170.484226 120.7544625 2.081903189 -0.000448 92 31 SH14831 14831 "MT tRNAs (Lys, Arg1, Gly)" 3' 22.734388 101.026801 22.734388 79.292413 51.0134005 1.707684274 -0.000475 125 4 SH9932 9932 RUF5-1 RUF5-1 466 486 22.984448 80.993996 51.989222 1.715913318 -0.000503 136 71 SH11290 11290 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3336 3353 23.292143 83.197811 53.244977 1.726278644 -0.000504 57 90 SH14456 14456 MT 21S rRNA 21S rRNA3 25.317602 122.223866 25.317602 97.906264 61.611933 1.789664834 -0.000516 174 74 SH2277 2277 Phe2 5' flank - tRNA2 2 23.928032 87.847578 55.887805 1.747317053 -0.000516 66 98 SH2115 2115 Met1 5' flank 26.801107 105.212511 66.006809 1.819588738 -0.000517 36 31 SH17641 17641 YJR145C_10_702761_701720_INTRON_15_270 intron 24.184581 112.91173 24.184581 89.727149 56.955865 1.755538452 -0.000521 150 41 SH5426 5426 snR31 snR31 196 212 27.285055 106.431853 66.858454 1.82515633 -0.000524 187 65 SH2640 2640 Pro3 3' flank 25.018039 95.889335 60.453687 1.781422793 -0.000527 32 70 SH7229 7229 snR65 5' 25.538199 98.988928 62.2635635 1.794233973 -0.000558 59 82 SH8477 8477 snoRNA cluster 5 3' 24.068862 111.960188 24.068862 88.891326 56.480094 1.751895411 -0.000562 78 64 SH4746 4746 snR5 5' 25.025361 95.948769 60.487065 1.781662512 -0.000572 186 88 SH20261 20261 YDR397C spliced 26.775224 105.089425 65.9323245 1.819098387 -0.000582 85 82 SH21418 21418 Ser4 spliced 108.954876 225.722618 167.338747 2.223596513 -0.000588 54 81 SH6719 6719 snR49 snR49 121 138 24.766819 94.017043 59.391931 1.773727446 -0.000589 192 17 SH11740 11740 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5586 5603 133.924212 261.39787 197.661041 2.295921078 -0.000604 56 77 SH9004 9004 snR17a / U3a U3a 306 321 25.987417 101.200417 63.593917 1.803415576 -0.000629 159 8 SH20157 20157 YDL130W spliced 24.965602 95.505888 60.235745 1.779854286 -0.00063 91 100 SH2046 2046 Lys3 3' flank 25.701163 99.793737 62.74745 1.797596081 -0.000631 176 68 SH663 663 Gln2 3' flank 26.069863 101.609368 63.8396155 1.805090263 -0.000666 107 47 SH3088 3088 Ser3 3' flank 26.03606 101.447241 63.7416505 1.804423305 -0.000721 137 39 SH17086 17086 YHL001W_8_104270_105084_INTRON_130_527 intron 41.911648 169.773403 41.911648 128.861755 85.3867015 1.931390237 -0.000722 16 45 SH16 16 Ala1 5' flank 27.51616 106.92187 67.219015 1.827492144 -0.000731 171 94 SH2328 2328 Phe3 5' flank 49.070896 139.115209 94.0930525 1.973557558 -0.000746 112 43 SH717 717 Gln3 3' flank 32.659692 115.508782 74.084237 1.869725812 -0.000752 4 18 SH13382 13382 MT COX1 Exon 5b 23.483385 107.09139 23.483385 84.608005 54.045695 1.732761106 -0.000793 181 42 SH3700 3700 Val3 5' flank 26.701749 104.7432 65.7224745 1.817713907 -0.000802 42 58 SH16761 16761 YGL087C_7_346902_346404_INTRON_12_96 intron 27.445352 133.225938 27.445352 106.780586 67.112969 1.826806452 -0.000821 82 16 SH19148 19148 YPL075W_16_412249_415357_INTRON_9_759 intron 185.763961 519.727133 185.763961 334.963172 260.3635665 2.415580212 -0.000883 47 59 SH11632 11632 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5046 5061 29.041926 110.042827 69.5423765 1.842249528 -0.000887 133 85 SH21483 21483 copy of SH1656 23.471455 84.530837 54.001146 1.732402976 -0.000901 77 58 SH15277 15277 MT 9S rRNA 9S 23.742771 109.257914 23.742771 86.515143 55.128957 1.741379776 -0.000904 124 57 SH5301 5301 snR30 snR30 356 370 194.458252 347.268468 270.86336 2.432750261 -0.000943 172 25 SH5104 5104 snR11 snR11 121 139 24.297893 90.593081 57.445487 1.759255916 -0.000951 67 96 SH16618 16618 YFL039C_6_54695_53260_INTRON_11_318 intron 25.441632 122.990951 25.441632 98.549319 61.9954755 1.792359995 -0.000988 109 86 SH20139 20139 YDL108W spliced 50.580656 141.307394 95.944025 1.982017934 -0.000992 62 37 SH19581 19581 AEP2/ATP13 0.6 26.591267 104.217518 65.4043925 1.815606916 -0.001069 104 95 SH2809 2809 Pro6 3' flank 23.005969 81.196233 52.101101 1.716846901 -0.00108 72 88 SH19303 19303 YPL198W_16_173151_174701_INTRON_12_420 intron 24.651741 116.862172 24.651741 93.210431 58.931086 1.770344444 -0.001089 189 18 SH3760 3760 Val4 tRNA 26 40 25.759439 100.117918 62.9386785 1.79891762 -0.001116 144 17 SH18534 18534 YMR230W_13_732413_733140_INTRON_53_462 intron 22.738417 101.112545 22.738417 79.374128 51.0562725 1.708049105 -0.00116 37 17 SH9438 9438 RUF2 RUF2 31 50 24.238444 90.178851 57.2086475 1.757461681 -0.001165 124 81 SH17699 17699 YKL006W_11_431544_432358_INTRON_130_527 3' exon 36.095823 155.488746 36.095823 120.392923 78.244373 1.893453115 -0.001171 214 31 SH741 741 Gln4 5' flank 25.230965 97.533319 61.382142 1.78804204 -0.001174 121 6 SH2295 2295 Phe2 tRNA 71 87 55.898529 148.889498 102.3940135 2.010274566 -0.001178 202 90 SH17211 17211 YHR039C-A_8_187670_187164_INTRON_4_165 intron 24.202315 113.12354 24.202315 89.921225 57.06177 1.756345239 -0.001226 75 79 SH7832 7832 snoRNA cluster1 intergenic/snR74 31.765641 145.041338 31.765641 114.275697 73.020669 1.863445808 -0.001233 24 96 SH15902 15902 YDL083C_4_307788_306925_INTRON_25_456 intron 26.518087 129.388282 26.518087 103.870195 65.194141 1.814208567 -0.001253 211 3 SH13624 13624 MT ATP6 ATP6 23.637617 108.412777 23.637617 85.77516 54.7063885 1.738038045 -0.001257 49 89 SH3071 3071 Ser3 tRNA 51 65 28.219853 108.397211 68.308532 1.834474952 -0.001259 71 43 SH21168 21168 YNL302C spliced 31.35234 113.688167 72.5202535 1.860459314 -0.001273 75 67 SH11762 11762 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5696 5714 105.870034 221.346987 163.6085105 2.213805891 -0.001288 49 68 SH14612 14612 MT 21S rRNA Sce1 endonuc 23.369357 106.195289 23.369357 83.825932 53.5976445 1.729145704 -0.001308 109 50 SH15049 15049 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.559771 107.770379 23.559771 85.210608 54.3851895 1.735480646 -0.00131 132 9 SH17580 17580 YJL191W_10_73786_74610_INTRON_11_418 intron 39.659062 164.283695 39.659062 125.624633 82.6418475 1.917200017 -0.001358 174 51 SH17132 17132 YHR010W_8_126513_127484_INTRON_32_592 intron 26.804469 131.103812 26.804469 105.299343 66.051906 1.819885354 -0.001366 7 29 SH9901 9901 RUF5-1 RUF5-1 311 332 23.836846 87.254294 55.54557 1.744649428 -0.001405 44 71 SH4816 4816 snR5 3' 26.566251 104.124791 65.345521 1.815215825 -0.00145 26 61 SH5130 5130 snR11 251-258 + 3' 251 24.365278 91.136408 57.750843 1.761558328 -0.001488 90 96 SH8930 8930 snR17a / U3a 5' 23.95183 88.114356 56.033093 1.748444596 -0.001496 84 100 SH12719 12719 MT ORF 8 (hypothetical) 3' 25.136125 121.016344 25.136125 96.880219 61.008172 1.785388012 -0.001551 64 45 SH20363 20363 YER131W spliced 124.365581 247.961825 186.163703 2.269895009 -0.001606 97 104 SH15380 15380 YBL027W_2_168385_169338_INTRON_3_386 intron 23.576948 107.940611 23.576948 85.363663 54.4703055 1.736159811 -0.001619 161 84 SH16053 16053 YDL191W_4_117665_118518_INTRON_4_494 intron/exon 22.828724 101.843584 22.828724 80.01486 51.421792 1.711147207 -0.001621 177 101 SH7325 7325 snR66 3' 24.422134 91.567029 57.9945815 1.763387419 -0.00163 120 69 SH14398 14398 MT 21S rRNA 21S rRNA3 24.158629 112.799518 24.158629 89.640889 56.899759 1.755110427 -0.001634 64 59 SH6373 6373 snR43 snR43 106 118 26.270851 102.680685 64.475768 1.809396524 -0.001662 208 7 SH2298 2298 Phe2 86-92 + 3' flank 86 26.044519 101.565403 63.804961 1.804854448 -0.001682 12 81 SH18686 18686 YNL112W_14_413636_416278_INTRON_1274_2275 intron 32.734157 147.402116 32.734157 115.667959 74.201058 1.870410098 -0.001685 176 90 SH4221 4221 telomerase RNA telomerase 141 155 26.184853 102.259177 64.222015 1.807683928 -0.001702 85 103 SH2672 2672 Pro4 tRNA-exon/intron 26 38 24.896425 95.094416 59.9954205 1.778118102 -0.001723 197 7 SH12381 12381 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.416118 128.820707 26.416118 103.404589 64.9103535 1.812313974 -0.001733 5 66 SH2607 2607 Pro3 5' flank - tRNA2 2 30.005588 111.75927 70.882429 1.850538592 -0.001754 88 77 SH21357 21357 YPR187W spliced 26.343321 103.047148 64.6952345 1.810872291 -0.001765 75 8 SH264 264 Arg4 5' flank 23.01048 81.287928 52.149204 1.717247684 -0.001781 194 21 SH15093 15093 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " intronic 28.030101 135.069835 28.030101 108.039734 68.0349175 1.832731862 -0.001793 88 10 SH14339 14339 MT VAR1 includes 5’ processing site VAR1 23.825922 110.035313 23.825922 87.209391 55.5176565 1.744431125 -0.001798 133 8 SH3178 3178 Ser5 tRNA 11 25 3606.281673 4442.067691 4024.174682 3.604676824 -0.001803 123 26 SH10481 10481 RUF8 RUF8 331 347 347.909781 564.444057 456.176919 2.659133308 -0.001825 188 34 SH4264 4264 telomerase RNA telomerase 356 373 24.356102 91.100625 57.7283635 1.761389246 -0.001825 2 16 SH11320 11320 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3486 3503 36227.5255 33724.71579 34976.12064 4.543771638 -0.001837 80 89 SH5275 5275 snR30 snR30 226 240 24.144471 89.558296 56.8513835 1.754741038 -0.001856 135 36 SH20402 20402 YFR031C-A spliced 29.715186 111.336183 70.5256845 1.84834731 -0.001856 194 91 SH1584 1584 Leu4 tRNA 91 108 24.127348 89.434051 56.7806995 1.754200738 -0.001858 211 44 SH10080 10080 RUF6 RUF6 246 263 26.761482 105.128038 65.94476 1.819180292 -0.001877 6 39 SH108 108 Arg1 5' flank 23.764157 86.761164 55.2626605 1.742431789 -0.001881 86 48 SH20383 20383 YFL034C-A spliced 31.507769 113.944195 72.725982 1.861689594 -0.001885 20 5 SH2701 2701 Pro4 3' flank 27.782324 107.53669 67.659507 1.830328829 -0.001892 115 39 SH9863 9863 RUF5-1 RUF5-1 121 142 24.151302 89.611955 56.8816285 1.754972022 -0.001899 186 46 SH19312 19312 YPL198W_16_173151_174701_INTRON_12_420 intron 23.723345 109.187392 23.723345 86.464047 55.093696 1.741101908 -0.001918 207 4 SH15911 15911 YDL083C_4_307788_306925_INTRON_25_456 intron 23.861799 110.348453 23.861799 87.486654 55.6742265 1.745654192 -0.001929 31 37 SH18793 18793 YNL301C_14_64561_63569_INTRON_113_544 intron 22.772578 101.438316 22.772578 79.665738 51.219158 1.709432435 -0.001951 120 21 SH19938 19938 YBL027W spliced 73.442003 174.158303 123.800153 2.092721181 -0.001951 121 87 SH13265 13265 MT COX1 COX1-ai4 24.33709 114.312709 24.33709 90.975619 57.6563545 1.760847179 -0.001979 176 22 SH8839 8839 LSR1 / U2 RNA U2 836 853 33.752198 117.156413 75.4543055 1.877684026 -0.002021 104 104 SH13399 13399 MT COX1 intronic 24.373714 114.62293 24.373714 91.249216 57.811465 1.762013975 -0.002033 93 96 SH471 471 Asp2 5' flank 25.836948 100.575158 63.206053 1.800758671 -0.002084 10 99 SH20427 20427 YGL033W spliced 74.840538 176.193974 125.517256 2.098703436 -0.002088 205 8 SH2047 2047 Lys4 5' flank 23.974892 88.342544 56.158718 1.749417185 -0.002111 99 42 SH18168 18168 YLR448W_12_1028848_1029762_INTRON_16_399 intron 462.91038 1185.207727 462.91038 723.297347 593.1038635 2.773130753 -0.002137 66 77 SH838 838 Glu2 5' flank 24.906524 95.211219 60.0588715 1.778577168 -0.002145 81 9 SH9373 9373 RUF1 RUF1 441 457 51.638087 142.898966 97.2685265 1.987972337 -0.002161 27 57 SH2064 2064 Lys4 5' flank - tRNA3 3 30.639943 112.711306 71.6756245 1.855371486 -0.002205 40 52 SH5065 5065 snR11 5' 28.637405 109.305967 68.971686 1.838670842 -0.002277 213 98 SH5607 5607 snR34 5' 42.629729 129.994624 86.3121765 1.936072068 -0.002286 125 26 SH21325 21325 YPR028W spliced 26.613258 104.429209 65.5212335 1.816382065 -0.002323 3 35 SH13203 13203 MT COX1 Exon4 23.655954 108.663737 23.655954 86.007783 54.8318685 1.739033046 -0.00235 5 44 SH18119 18119 YLR388W_12_898158_898821_INTRON_1_488 5' exon 28.466026 136.428405 28.466026 108.962379 68.7142025 1.83704651 -0.002358 23 91 SH1286 1286 Ile2 126-133 + 3' flank 126 140 24.628588 93.160589 58.8945885 1.770075392 -0.002363 206 58 SH7086 7086 snR63 5' 24.213768 90.115766 57.164767 1.757128438 -0.002429 68 36 SH20573 20573 YHR012W spliced 28.568444 109.174918 68.871681 1.838040683 -0.002432 119 75 SH8130 8130 snoRNA cluster 3; snR41 25.737418 124.85081 25.737418 100.113392 62.925405 1.798826019 -0.002436 97 52 SH1777 1777 Leu8 5' flank 26.075977 101.78404 63.9300085 1.805704762 -0.002478 103 56 SH678 678 Gln3 5' flank 23.645143 85.940952 54.7930475 1.738725456 -0.002489 160 50 SH115 115 Arg1 5' flank 24.323283 90.922647 57.622965 1.760595601 -0.002495 50 9 SH4330 4330 telomerase RNA telomerase 686 702 110.438778 228.132073 169.2854255 2.228619569 -0.002512 146 85 SH14096 14096 MT COB Cytbi4 22.862336 102.174675 22.862336 80.312339 51.5873375 1.712543114 -0.002512 83 69 SH13501 13501 MT COX1 intronic 26.515163 129.474648 26.515163 103.959485 65.237324 1.814496138 -0.002526 68 45 SH11758 11758 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5676 5689 28040.23314 26931.4267 27485.82992 4.439108855 -0.002572 83 58 SH10132 10132 RUF6 RUF6 506 520 34.665936 118.485925 76.5759305 1.884092283 -0.002584 144 29 SH9525 9525 RUF3 RUF3 11 27 27.87559 107.770057 67.8228235 1.831375866 -0.00262 54 12 SH13904 13904 MT COB Exon3 25.099717 120.812191 25.099717 96.712474 60.9060955 1.784660759 -0.002631 133 12 SH3814 3814 RNaseP RNaseP 36 52 27.114489 106.196626 66.6555575 1.823836365 -0.002636 41 80 SH18052 18052 YLR333C_12_796335_795573_INTRON_1_423 intron 30.916875 143.054827 30.916875 113.137952 72.0274135 1.85749782 -0.002667 194 32 SH2488 2488 Pro1 5' flank 89.19849 197.150239 143.1743645 2.155865264 -0.002679 184 84 SH20433 20433 YGL076C spliced 26.374809 103.279296 64.8270525 1.811756276 -0.002709 207 24 SH154 154 Arg1 3' flank 24.452562 91.89297 58.172766 1.764719714 -0.002714 34 5 SH20013 20013 YBR084C-A spliced 30.723179 112.860142 71.7916605 1.856073998 -0.002717 158 59 SH10313 10313 RUF7 RUF7 176 197 22.699964 79.244857 50.9724105 1.707335172 -0.002751 180 4 SH2173 2173 Met2 5' flank - tRNA8 8 28.280396 108.606813 68.4436045 1.835332873 -0.002752 93 97 SH18838 18838 YNL302C_14_62942_61957_INTRON_21_571 intron 23.943191 111.109746 23.943191 88.166555 56.054873 1.748613373 -0.002758 211 57 SH9702 9702 RUF4 RUF4 286 303 26.201532 102.426562 64.314047 1.808305839 -0.00276 171 10 SH19703 19703 Negative Control 24.612797 93.083721 58.848259 1.769733619 -0.002784 201 61 SH3590 3590 Val1 5' flank 24.24356 90.367764 57.305662 1.758197534 -0.002801 2 8 SH18206 18206 YML024W_13_225889_226697_INTRON_4_401 intron 22.410378 98.738479 22.410378 77.328101 49.8692395 1.697832745 -0.002803 159 7 SH15645 15645 YBR189W_2_604466_605466_INTRON_8_420 exon/intron 27.034031 132.07245 27.034031 106.038419 66.536225 1.823058157 -0.002804 213 26 SH6346 6346 snR43 5' 26.119148 102.027416 64.073282 1.80667697 -0.002857 79 78 SH18493 18493 YMR194W_13_651144_651909_INTRON_17_479 intron 25.993141 126.400528 25.993141 101.407387 63.700264 1.804141232 -0.002878 84 17 SH17043 17043 YGR214W_7_920570_921783_INTRON_91_545 5' exon 23.846852 110.310674 23.846852 87.463822 55.655337 1.745506817 -0.002888 139 69 SH7376 7376 snR68 snR68 101 117 132.148344 259.246926 195.697635 2.291585577 -0.002953 124 28 SH6177 6177 snR40 5' 28.518776 109.104305 68.8115405 1.837661281 -0.002956 67 59 SH4182 4182 telomerase RNA 5' 26.519531 104.016605 65.268068 1.814700757 -0.002961 146 40 SH15590 15590 YBR084C-A_2_415219_414144_INTRON_3_508 3' exon 24.986562 119.879776 24.986562 95.893214 60.439888 1.781323651 -0.002972 188 102 SH7895 7895 snoRNA cluster1 intergenic 25.840069 125.501939 25.840069 100.66187 63.2509695 1.801067187 -0.002988 191 68 SH2874 2874 Pro7 3' flank 24.064644 89.085747 56.5751955 1.752626063 -0.003027 48 84 SH3176 3176 Ser5 tRNA 1 13 532.065266 817.238128 674.651697 2.829079617 -0.003038 65 57 SH356 356 Arg5 3' flank 57.26279 150.967854 104.115322 2.017514647 -0.00311 189 35 SH8173 8173 snoRNA cluster 3; snR70 24.320967 114.285097 24.320967 90.96413 57.6425485 1.760743174 -0.003122 141 68 SH19782 19782 Negative Control 46.482088 135.596184 91.039136 1.959228127 -0.003157 118 5 SH19146 19146 YPL075W_16_412249_415357_INTRON_9_759 intron 30.903809 143.049965 30.903809 113.146156 72.0249825 1.857483161 -0.003162 179 86 SH10666 10666 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 216 234 40.218759 126.554557 83.386658 1.921096568 -0.003167 204 56 SH5354 5354 snR30 3' 24.233633 90.330326 57.2819795 1.758018018 -0.00318 88 63 SH6466 6466 snR45 3' 23.01889 81.468585 52.2437375 1.718034239 -0.003198 19 33 SH6316 6316 snR42 3' 22.568425 78.40553 50.4869775 1.703179372 -0.003205 71 35 SH6196 6196 snR40 snR40 41 56 27.017682 106.027156 66.522419 1.822968033 -0.003209 119 19 SH16495 16495 YER117W_5_396765_397649_INTRON_43_513 intron 41.500797 168.931845 41.500797 128.431048 84.9659225 1.929244777 -0.003209 36 38 SH6910 6910 snR58 5' 28.913106 109.919262 69.416184 1.841460736 -0.003223 37 104 SH1248 1248 Ile2 5' flank 23.976954 88.463977 56.2204655 1.749894437 -0.003258 180 16 SH3918 3918 RNase MRP RNaseMRP 6 22 58.974264 153.408723 106.1914935 2.026089729 -0.003284 94 15 SH11683 11683 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5301 5314 88.593625 196.343136 142.4683805 2.153718488 -0.003293 52 21 SH944 944 Gly1 5' flank 29.103021 110.306638 69.7048295 1.843262869 -0.003294 62 46 SH3362 3362 Thr3 3' flank 74.79174 176.243033 125.5173865 2.098703888 -0.003301 162 25 SH16911 16911 YGL232W_7_62074_63001_INTRON_58_115 3' exon 24.585549 116.517898 24.585549 92.932349 58.758949 1.769074019 -0.003314 38 79 SH5344 5344 snR30 snR30 571 587 26.361025 103.261522 64.8112735 1.811650555 -0.003332 46 101 SH8924 8924 snR17a / U3a 5' 32.852224 115.933086 74.392655 1.871530059 -0.003332 200 10 SH14828 14828 "MT tRNAs (Lys, Arg1, Gly)" 3' 24.089216 112.381853 24.089216 89.292637 56.6909265 1.753513555 -0.003338 149 65 SH19531 19531 CBP1 1.2 24.85258 94.924801 59.8886905 1.777344817 -0.003351 83 27 SH20922 20922 YLR367W spliced 25.94256 101.196465 63.5695125 1.803248881 -0.003362 54 96 SH18505 18505 YMR194W_13_651144_651909_INTRON_17_479 intron 26.513628 129.535829 26.513628 104.022201 65.2679145 1.814699736 -0.003388 189 98 SH13451 13451 MT COX1 intronic 23.844292 110.337527 23.844292 87.493235 55.6687635 1.745611575 -0.003417 175 9 SH7547 7547 snR79 76-84 + 3' 76 22.996132 81.325687 52.1609095 1.717345155 -0.003428 200 42 SH18720 18720 YNL130C_14_381156_379555_INTRON_30_470 intron/exon 24.498383 115.797794 24.498383 92.299411 58.398897 1.766404645 -0.003439 29 2 SH9750 9750 RUF4 RUF4 526 541 25.005867 96.087488 60.5466775 1.782090316 -0.003469 70 65 SH3820 3820 RNaseP RNaseP 66 84 25.881293 100.903181 63.392237 1.802036078 -0.003472 90 66 SH945 945 Gly1 5' flank 25.549338 99.272205 62.4107715 1.795259551 -0.003497 172 3 SH6467 6467 snR45 3' 23.15773 82.489552 52.823641 1.722828333 -0.003499 2 56 SH17335 17335 YIL018W_9_316766_317930_INTRON_5_404 intron 23.439277 106.968401 23.439277 84.529124 53.9842005 1.732266674 -0.003529 150 97 SH12952 12952 MT COX1 COX1ai2 25.015446 120.182712 25.015446 96.167266 60.591356 1.782410672 -0.003546 11 42 SH21860 21860 copy of SH18010 23.326539 83.713997 53.520268 1.728518279 -0.003569 18 41 SH2952 2952 Ser1 5' flank - tRNA9 9 27.61301 107.284762 67.448886 1.828974781 -0.003596 36 10 SH778 778 Glu1 5' flank 32.495187 115.437438 73.9663125 1.869033968 -0.003601 17 11 SH3986 3986 RNase MRP 3' 23.615574 85.831016 54.723295 1.738172239 -0.00368 76 79 SH19627 19627 RNA14 2.2 24.2223 90.293992 57.258146 1.757837282 -0.003681 200 94 SH5158 5158 snR13 5' 26.404684 103.50695 64.955817 1.81261805 -0.003692 196 61 SH19639 19639 RNA14 2.2 26.169923 102.34562 64.2577715 1.80792566 -0.003697 51 89 SH4504 4504 U3b (snR17b) U3b 76 92 26.067394 101.839656 63.953525 1.805864487 -0.003704 118 30 SH8214 8214 snoRNA cluster 3; snR51 98.910553 309.379677 98.910553 211.469124 155.1898385 2.190863281 -0.003718 182 49 SH6372 6372 snR43 snR43 101 116 27.279277 106.604162 66.9417195 1.825696864 -0.003784 158 94 SH19328 19328 YPL218W_16_138697_139408_INTRON_29_167 intron 25.040092 120.417247 25.040092 96.377155 60.7086235 1.783250386 -0.00379 175 25 SH14374 14374 MT ORF9 and ORF10 (hypothetical) ORF10 24.567059 116.411704 24.567059 92.844645 58.705852 1.768681395 -0.003831 28 35 SH21151 21151 YNL265C spliced 25.109309 96.905842 61.0075755 1.785383766 -0.003848 23 17 SH6488 6488 snR46 5' 26.556349 104.271775 65.414062 1.815671118 -0.003849 198 24 SH6802 6802 snR52 5' 26.008866 101.564352 63.786609 1.804729515 -0.003875 73 62 SH3387 3387 Thr4 tRNA 21 35 26.527645 104.134129 65.330887 1.815118555 -0.003907 56 11 SH13765 13765 MT COB intronic 25.327259 122.542616 25.327259 98.215357 61.771308 1.790786798 -0.003919 207 2 SH9786 9786 RUF4 RUF4 706 727 25.978586 101.418646 63.698616 1.804129996 -0.003922 68 82 SH19675 19675 SIR1 2.4 50.668598 141.65165 96.160124 1.982995015 -0.003939 154 36 SH18812 18812 YNL302C_14_62942_61957_INTRON_21_571 intron 25.083007 120.80156 25.083007 96.718553 60.90078 1.784622855 -0.003965 42 74 SH1762 1762 Leu7 3' flank 24.701119 93.853497 59.277308 1.772888473 -0.003968 189 93 SH19380 19380 YPR043W_16_654161_654842_INTRON_3_405 intron 28.422174 136.38845 28.422174 108.966276 68.694225 1.836920228 -0.003969 38 103 SH7906 7906 snoRNA cluster1 intergenic 23.779466 109.843805 23.779466 87.064339 55.4219025 1.74368143 -0.003973 143 94 SH17913 17913 YLR061W_12_263195_263949_INTRON_13_401 intron 29.268842 138.949253 29.268842 110.680411 69.9746265 1.844940589 -0.003977 145 94 SH3179 3179 Ser5 tRNA 16 30 126.640777 251.533106 189.0869415 2.276661537 -0.003994 105 90 SH16113 16113 YDR064W_4_579453_580447_INTRON_22_560 intron 23.147265 104.60564 23.147265 82.458375 52.80282 1.722657117 -0.00401 141 25 SH8160 8160 snoRNA cluster 3; snR70 27.576431 133.809728 27.576431 107.233297 67.404864 1.828691237 -0.004019 207 14 SH10160 10160 RUF6 RUF6 646 663 25.020687 96.253693 60.63719 1.782739067 -0.004021 144 63 SH14643 14643 MT 21S rRNA intronic 22.704781 101.087184 22.704781 79.382403 51.043592 1.707941229 -0.004068 100 74 SH16666 16666 YFR032C-A_6_223758_223245_INTRON_1_331 intron 26.221804 127.854392 26.221804 102.632588 64.427196 1.80906923 -0.004075 18 56 SH16564 16564 YER133W_5_432491_433954_INTRON_178_702 intron 86.785354 279.582944 86.785354 193.79759 140.291472 2.147031272 -0.004079 27 93 SH12534 12534 MT_ORF6 + ORF7 (hypothetical) ORF6/7 22.780811 101.673057 22.780811 79.892246 51.3365285 1.710426497 -0.004081 146 2 SH3727 3727 Val3 3' flank 24.277079 90.733484 57.5052815 1.759707734 -0.004098 136 69 SH8523 8523 snR19 / U1 RNA U1 111 128 124.104633 247.958429 186.031531 2.26958656 -0.004101 151 77 SH10293 10293 RUF7 RUF7 76 93 25.260146 97.900747 61.5804465 1.789442834 -0.004104 16 79 SH1441 1441 Leu2 5' flank 27.56818 107.2222 67.39519 1.828628902 -0.004124 185 48 SH18739 18739 YNL162W_14_331319_332151_INTRON_5_516 intron 23.472016 107.293536 23.472016 84.82152 54.146768 1.733572539 -0.004136 97 29 SH1219 1219 Ile1 tRNA 56 68 28.361397 108.852217 68.606807 1.836367207 -0.00414 207 32 SH20765 20765 YJR145C spliced 34.916299 118.928819 76.922559 1.886053724 -0.004147 64 81 SH8252 8252 snoRNA cluster4 5' 25.80466 125.385231 25.80466 100.580571 63.1926155 1.800666331 -0.004167 148 57 SH15554 15554 YBR082C_2_407127_406586_INTRON_48_142 5' exon 24.945312 119.648833 24.945312 95.703521 60.3244165 1.78049313 -0.004199 119 74 SH4023 4023 SRP RNA SRP RNA 6 22 30.86356 113.145835 72.0046975 1.85736083 -0.004221 42 99 SH16803 16803 YGL137W_7_249872_252741_INTRON_19_218 intron 28.609209 136.972638 28.609209 109.363429 68.986319 1.838762972 -0.004254 63 74 SH8837 8837 LSR1 / U2 RNA U2 826 842 26.967644 105.982018 66.474831 1.822657242 -0.004264 37 86 SH19335 19335 YPL241C_16_96258_95372_INTRON_26_105 5' exon 24.956618 119.752156 24.956618 95.795538 60.376078 1.780864898 -0.00427 88 71 SH21813 21813 copy of SH15493 101.488973 215.341575 158.415274 2.199797053 -0.00428 62 47 SH10581 10581 RUF8 RUF8 831 848 25.080201 96.729296 60.9047485 1.784651154 -0.004287 205 5 SH6751 6751 snR50 5' 26.178361 102.436034 64.3071975 1.808259583 -0.004303 163 75 SH10248 10248 RUF6 3' 26.531788 104.188314 65.360051 1.815312382 -0.004319 111 92 SH3811 3811 RNaseP RNaseP 21 38 24.508194 92.458581 58.4833875 1.76703252 -0.004353 195 11 SH1560 1560 Leu4 5' flank 24.160049 89.903511 57.03178 1.756116926 -0.004374 7 56 SH11954 11954 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6656 6671 1930.577196 2570.016334 2250.296765 3.352239796 -0.004381 207 30 SH14532 14532 MT 21S rRNA 21S rRNA3 23.669862 108.9658 23.669862 86.295938 54.9829 1.740227642 -0.004413 72 34 SH6713 6713 snR49 snR49 91 109 58.507583 152.822239 105.664911 2.023930792 -0.004421 185 87 SH10361 10361 RUF7 RUF7 416 432 28.743248 109.647386 69.195317 1.840076703 -0.004458 21 38 SH13804 13804 MT COB intronic 528.241003 1340.095921 528.241003 812.854918 670.5479605 2.826429846 -0.004471 61 63 SH782 782 Glu1 5' flank 24.52512 92.596245 58.5606825 1.76760613 -0.004484 60 71 SH13651 13651 MT ATP6 ATP6 24.573954 116.532894 24.573954 92.95894 58.766447 1.769129434 -0.004494 213 78 SH20355 20355 YER117W spliced 23.849822 87.633466 55.741644 1.746179773 -0.0045 163 84 SH19235 19235 YPL090C_16_378390_377286_INTRON_7_400 intron 26.781684 131.230372 26.781684 105.448688 66.115186 1.820301224 -0.004543 201 42 SH17843 17843 YKR094C_11_618384_617630_INTRON_9_376 intron 24.544715 116.291784 24.544715 92.747069 58.645892 1.768237596 -0.004545 188 57 SH10930 10930 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1536 1549 54.56927 147.260137 100.9147035 2.003954449 -0.004583 117 68 SH16301 16301 YDR450W_4_1359912_1360787_INTRON_48_482 intron 860.907725 2109.926994 860.907725 1250.019269 1055.463497 3.023443218 -0.004598 84 60 SH3148 3148 Ser4 3' flank 24.430426 91.908069 58.1692475 1.764693446 -0.004605 178 28 SH2650 2650 Pro4 5' flank 26.206291 102.600054 64.4031725 1.808907261 -0.004625 45 6 SH18208 18208 YML024W_13_225889_226697_INTRON_4_401 3' exon 35.792446 154.97083 35.792446 120.178384 77.985415 1.892013388 -0.004634 181 104 SH4810 4810 snR5 3' 24.553096 92.81875 58.685923 1.768533939 -0.004646 170 33 SH7730 7730 snoRNA cluster1 intergenic 24.960697 119.824107 24.960697 95.86341 60.4120535 1.781123598 -0.004648 111 19 SH5766 5766 snR35 snR35 16 32 28.88626 109.948296 69.417278 1.84146758 -0.004651 58 86 SH21048 21048 YMR142C spliced 27.628659 107.379564 67.5041115 1.829330225 -0.004692 143 64 SH3722 3722 Val3 3' flank 22.558801 78.461742 50.5102715 1.703379703 -0.004724 166 79 SH16207 16207 YDR381W_4_1236547_1237993_INTRON_286_1051 exon/intron 24.636992 117.087458 24.636992 93.450466 59.043729 1.771173778 -0.00474 137 18 SH10774 10774 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 756 776 24.59503 93.14149 58.86826 1.769881199 -0.004768 162 66 SH4393 4393 telomerase RNA telomerase 1001 1022 22.287943 76.675312 49.4816275 1.694443976 -0.004777 78 99 SH21061 21061 YMR194W spliced 23.88967 87.955062 55.922366 1.747585538 -0.00478 98 29 SH19192 19192 YPL081W_16_404945_406039_INTRON_8_508 5' exon 32.227318 146.354421 32.227318 115.127103 73.6772105 1.867333175 -0.004796 107 26 SH10046 10046 RUF6 RUF6 76 97 23.027054 81.667151 52.3471025 1.718892648 -0.004841 90 56 SH18366 18366 YMR079W_13_424988_426058_INTRON_10_165 intron 22.109177 96.619137 22.109177 75.50996 48.8095685 1.688504968 -0.004852 137 37 SH15220 15220 MT COX3 cox3 23.972357 111.554233 23.972357 88.581876 56.2771165 1.750331837 -0.004901 55 28 SH8639 8639 snR19 / U1 RNA 3' 22.081529 75.336156 48.7088425 1.687607809 -0.004938 188 43 SH4625 4625 snR3 snR3 41 57 30.560327 112.745051 71.652689 1.855232493 -0.00495 7 34 SH5840 5840 snR35 snR35 386 398 109.613443 227.266367 168.439905 2.226444988 -0.004983 163 56 SH16414 16414 YER056C-A_5_270183_269421_INTRON_38_434 intron 22.434905 99.097843 22.434905 77.662938 50.0489215 1.699394723 -0.005013 7 89 SH14843 14843 MT tRNA Asp tRNA / 3' 25.305642 122.49978 25.305642 98.194138 61.74989 1.790636188 -0.005019 118 88 SH21572 21572 copy of SH5387 37.858 123.243678 80.550839 1.906070068 -0.00506 124 38 SH929 929 Glu3 3' flank 30.272447 112.330398 71.3014225 1.853098194 -0.005062 67 19 SH19347 19347 YPL249C-A_16_76239_75699_INTRON_17_254 intron 26.594231 130.153641 26.594231 104.55941 65.5768205 1.816750356 -0.005063 142 90 SH334 334 Arg5 tRNA 6 18 72.929027 173.714712 123.3218695 2.0910401 -0.005064 93 72 SH16286 16286 YDR450W_4_1359912_1360787_INTRON_48_482 5' exon 23.109885 104.390704 23.109885 82.280819 52.695352 1.72177231 -0.005068 175 16 SH15827 15827 YDL064W_4_337486_338069_INTRON_39_148 3' exon 24.462628 115.657018 24.462628 92.19439 58.328509 1.765880875 -0.00512 91 83 SH3454 3454 Trp1 101-106 + 3' falnk 101 22.464184 77.868871 50.1665275 1.70041404 -0.005167 30 104 SH3066 3066 Ser3 tRNA 26 40 67.846375 166.34855 117.0974625 2.068547484 -0.005186 186 41 SH4844 4844 snR8 snR8 1 20 32.741752 115.879233 74.3104925 1.87105014 -0.005219 200 12 SH10590 10590 RUF8 RUF8 876 893 24.002578 88.837174 56.419876 1.751432127 -0.005237 81 6 SH7901 7901 snoRNA cluster1 intergenic 23.446259 107.178997 23.446259 84.732738 54.0894985 1.733112955 -0.005254 45 19 SH17727 17727 YKL156W_11_158616_159214_INTRON_4_353 intron 39.185034 163.374328 39.185034 125.189294 82.187164 1.914803995 -0.005255 143 95 SH10928 10928 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1526 1539 27.26788 106.669189 66.9685345 1.825870795 -0.005351 86 69 SH14673 14673 MT 21S rRNA 21S rRNA4 24.914019 119.495709 24.914019 95.58169 60.2478545 1.779941586 -0.005355 213 3 SH20514 20514 YGR029W spliced 25.753035 100.422898 63.0879665 1.799946529 -0.005393 89 39 SH9705 9705 RUF4 RUF4 301 313 30.064332 112.044133 71.0542325 1.851589953 -0.005421 39 99 SH2263 2263 Phe2 5' flank 25.52261 99.291444 62.407027 1.795233494 -0.00543 47 23 SH8204 8204 snoRNA cluster 3; intergenic/snR51 25.177497 121.762062 25.177497 97.584565 61.381031 1.788034179 -0.005469 90 26 SH6904 6904 snR56 3' 24.637414 93.525373 59.0813935 1.77145073 -0.005488 87 24 SH1201 1201 Ile1 5' flank 24.123314 89.742702 56.933008 1.75536413 -0.005536 144 14 SH13274 13274 MT COX1 Exon 5a 22.709095 101.238184 22.709095 79.529089 51.119092 1.708583131 -0.005538 101 2 SH6137 6137 snR39B snR39B 26 42 37.397767 122.59456 79.9961635 1.903069159 -0.005547 119 6 SH5985 5985 snR36 3' 24.957025 95.925378 60.4412015 1.781333089 -0.005559 52 44 SH3134 3134 Ser4 tRNA 76 90 28.472537 109.164853 68.818695 1.837706433 -0.005626 168 2 SH20901 20901 YLR306W spliced 25.852477 100.931846 63.3921615 1.80203556 -0.005628 80 74 SH776 776 Gln4 3' flank 22.164531 75.931676 49.0481035 1.69062222 -0.005635 213 14 SH321 321 Arg5 5' flank 24.479773 92.376241 58.428007 1.766621073 -0.005702 189 61 SH9888 9888 RUF5-1 RUF5-1 246 264 22.730027 79.684234 51.2071305 1.70933044 -0.005724 24 10 SH16843 16843 YGL178W_7_167356_170575_INTRON_4_643 intron 23.177946 105.006039 23.177946 82.828093 53.0030195 1.724300611 -0.005731 171 100 SH10547 10547 RUF8 RUF8 661 682 23.482954 85.04716 54.265057 1.734520264 -0.005777 98 18 SH6489 6489 snR46 5' 25.89786 101.167765 63.5328125 1.802998081 -0.005779 61 97 SH7240 7240 snR65 5' 24.516765 92.659275 58.58802 1.767808821 -0.005799 131 42 SH18201 18201 YML024W_13_225889_226697_INTRON_4_401 intron 137.985579 404.952516 137.985579 267.966937 202.976258 2.307445242 -0.005839 30 83 SH3380 3380 Thr4 5' flank - tRNA5 5 23.628368 86.122896 54.875632 1.739379535 -0.00588 109 29 SH14641 14641 MT 21S rRNA intronic 22.059036 96.320676 22.059036 75.26164 48.660338 1.687175121 -0.005888 185 53 SH14033 14033 MT COB Cytbi4 23.000454 103.569093 23.000454 81.568639 52.2845465 1.718373345 -0.005917 149 55 SH7149 7149 snR63 251-255 + 3' 251 22.745871 79.809146 51.2775085 1.709926915 -0.005957 78 94 SH2107 2107 Met1 5' flank 24.20648 90.392416 57.299448 1.758150438 -0.005992 159 6 SH10245 10245 RUF6 3' 24.892191 95.480846 60.1865185 1.779499222 -0.006001 130 5 SH8385 8385 snoRNA cluster 5 5'/snR190 25.192951 121.910286 25.192951 97.717335 61.455143 1.788558234 -0.006005 136 84 SH16248 16248 YDR397C_4_1266887_1266355_INTRON_38_129 5' exon 23.798134 110.186522 23.798134 87.388388 55.593261 1.74502215 -0.006009 80 75 SH18667 18667 YNL112W_14_413636_416278_INTRON_1274_2275 intron 26.837918 131.648711 26.837918 105.810793 66.3243555 1.821673038 -0.006047 202 66 SH21022 21022 YMR079W spliced 27.895373 108.007437 67.951405 1.832198441 -0.006055 171 80 SH685 685 Gln3 5' flank 24.363685 91.553671 57.958678 1.763118471 -0.006066 48 67 SH3251 3251 Thr1 3' flank 23.780735 87.264909 55.522822 1.744471531 -0.006069 6 20 SH626 626 Gln2 5' flank 23.706554 86.719933 55.2132435 1.742043261 -0.006109 95 26 SH19717 19717 Negative Control 26.571579 104.532641 65.55211 1.816586675 -0.00611 146 16 SH10264 10264 RUF7 5' 24.767787 94.559725 59.663756 1.77571059 -0.006125 99 30 SH1118 1118 Gly4 66-72 + 3' flank 66 23.961248 88.613952 56.2876 1.750412732 -0.006142 106 51 SH4706 4706 snR4 snR4 66 78 1021.713444 1457.59424 1239.653842 3.093300431 -0.006213 174 81 SH12107 12107 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7421 7436 178.457866 325.67232 252.065093 2.401512707 -0.006215 137 78 SH18668 18668 YNL112W_14_413636_416278_INTRON_1274_2275 intron 22.157407 97.087272 22.157407 75.929865 49.043636 1.69058266 -0.006221 194 98 SH15805 15805 YDL061C_4_341182_340627_INTRON_1_408 intron 23.200245 105.233174 23.200245 83.032929 53.116587 1.725230162 -0.006236 27 69 SH7394 7394 snR68 3' 163.380148 304.176056 233.778102 2.368803828 -0.006248 101 5 SH16131 16131 YDR064W_4_579453_580447_INTRON_22_560 intron 23.803192 110.251951 23.803192 87.448759 55.6259755 1.74527764 -0.006259 39 36 SH1504 1504 Leu3 5' flank - tRNA9 9 33.542874 117.099598 75.321236 1.876917438 -0.006268 145 100 SH1702 1702 Leu6 76-84 + 3' flank 76 22.736156 79.772129 51.2541425 1.709728972 -0.006306 147 101 SH13919 13919 MT COB Cytbi3 24.22982 113.82348 24.22982 90.59366 57.41174 1.759000709 -0.006318 81 51 SH8032 8032 snoRNA cluster 2 snR55 51.537688 193.605949 51.537688 143.068261 97.3029745 1.988126117 -0.006322 153 54 SH19357 19357 YPL249C-A_16_76239_75699_INTRON_17_254 intron/exon 24.77809 118.435569 24.77809 94.657479 59.7177845 1.776103687 -0.006337 67 54 SH19205 19205 YPL081W_16_404945_406039_INTRON_8_508 intron 28.952221 138.134049 28.952221 110.181828 69.5670245 1.842403428 -0.006364 118 94 SH20417 20417 YGL030W spliced 30.50998 112.748905 71.6294425 1.855091571 -0.006368 98 59 SH505 505 Asp2 3' flank 23.27333 83.573758 53.423544 1.727732695 -0.006373 189 104 SH7496 7496 snR71 3' 23.599866 85.959811 54.7798385 1.738620748 -0.006397 167 77 SH1579 1579 Leu4 tRNA-intron/exon 66 82 45.127112 133.867587 89.4973495 1.951810174 -0.006408 111 68 SH10300 10300 RUF7 RUF7 111 130 23.934258 88.437375 56.1858165 1.749626696 -0.00641 8 85 SH19085 19085 YOR293W_15_867094_867848_INTRON_53_489 intron 24.201297 113.595105 24.201297 90.393808 57.2975525 1.758136071 -0.006416 92 30 SH14441 14441 MT 21S rRNA 21S rRNA3 24.850272 119.056661 24.850272 95.206389 60.0283305 1.778356265 -0.006416 121 93 SH5708 5708 snR34 snR34 461 481 24.921485 95.741988 60.3317365 1.780545826 -0.006416 94 27 SH21244 21244 YOR312C spliced 26.744166 105.417174 66.08067 1.820074438 -0.00642 179 101 SH12721 12721 MT COX1 5' 22.530442 99.938169 22.530442 78.407727 50.4690845 1.703025427 -0.006424 146 32 SH14909 14909 MT tRNA Tyr 5' 23.547706 108.127118 23.547706 85.579412 54.563559 1.73690269 -0.006427 170 76 SH14897 14897 MT tRNA Ile tRNA 24.275261 114.213654 24.275261 90.938393 57.606827 1.760473955 -0.00644 139 13 SH21625 21625 copy of SH7730 24.582348 93.213801 58.8980745 1.770101097 -0.00651 194 43 SH2376 2376 Phe4 5' flank 24.144472 89.987299 57.0658855 1.756376561 -0.006514 177 91 SH6919 6919 snR58 5' 28.324213 108.914356 68.6192845 1.836446185 -0.006529 59 57 SH3890 3890 RNaseP 3' 28.084358 108.423712 68.254035 1.834128331 -0.00654 202 78 SH15892 15892 YDL082W_4_308423_309387_INTRON_5_369 intron 23.730803 109.671302 23.730803 86.940499 55.335651 1.743005024 -0.006565 151 102 SH3676 3676 Val2 3' flank 24.989031 96.266077 60.627554 1.782670047 -0.006566 79 90 SH4101 4101 SRP RNA SRP RNA 396 412 24.223383 90.570863 57.397123 1.758890124 -0.00658 91 22 SH19177 19177 YPL079W_16_406631_407534_INTRON_12_432 intron 24.260761 114.105774 24.260761 90.845013 57.552887 1.760067114 -0.00658 17 85 SH18591 18591 YNL050C_14_534978_534075_INTRON_18_108 3' exon 40451.28985 77726.35705 40451.28985 37276.0672 38863.67852 4.589543905 -0.006592 118 42 SH14857 14857 MT tRNA Ser2; tRNA Arg2 tRNA Ser 38.381585 161.489594 38.381585 124.108009 81.244797 1.909795558 -0.006616 189 87 SH4670 4670 snR3 3' 24.762091 94.565749 59.66392 1.775711784 -0.006626 137 7 SH21523 21523 copy of SH3384 25.692208 100.220668 62.956438 1.799040148 -0.006634 159 57 SH7371 7371 snR68 snR68 76 100 22.593583 78.845123 50.719353 1.705173705 -0.006636 129 28 SH7430 7430 snR69 snR69 51 70 23.325891 83.979948 53.6529195 1.729593359 -0.006655 156 4 SH20963 20963 YML025C spliced 24.812642 94.948043 59.8803425 1.777284276 -0.006662 114 18 SH20440 20440 YGL087C spliced 26.774312 105.589048 66.18168 1.820737787 -0.006681 181 92 SH13784 13784 MT COB intronic 24.515344 116.249157 24.515344 92.733813 58.6245785 1.768079733 -0.006693 12 27 SH5778 5778 snR35 snR35 76 98 23.224131 83.246115 53.235123 1.726198262 -0.006702 157 87 SH19107 19107 YOR312C_15_901173_900242_INTRON_2_427 intron 23.355735 106.557005 23.355735 84.20127 53.7785025 1.730608705 -0.006703 184 3 SH10271 10271 RUF7 5' 26.448313 103.971205 65.209759 1.814312595 -0.006736 122 35 SH11866 11866 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6216 6233 474.938911 741.842389 608.39065 2.784182531 -0.006745 213 2 SH13840 13840 MT COB Cytbi2 25.718309 125.077565 25.718309 100.359256 63.0387825 1.799607817 -0.006759 112 13 SH16697 16697 YGL031C_7_438393_437938_INTRON_1_456 intron 74.681712 250.106664 74.681712 176.424952 125.553332 2.098828243 -0.00676 35 80 SH9904 9904 RUF5-1 RUF5-1 326 345 23.545984 85.596683 54.5713335 1.736964566 -0.006761 205 12 SH5368 5368 snR31 5' 24.667008 93.869424 59.268216 1.772821855 -0.006773 61 73 SH18277 18277 YML056C_13_164176_162194_INTRON_461_868 intron 41.81588 169.936723 41.81588 129.120843 85.4683615 1.931805378 -0.006774 136 102 SH16427 16427 YER074W_5_306319_307192_INTRON_4_469 intron 24.074485 112.575588 24.074485 89.501103 56.787794 1.754254998 -0.00678 153 13 SH6987 6987 snR60 snR60 16 32 81.081887 185.763209 133.422548 2.12522923 -0.006786 130 102 SH14121 14121 MT COB intronic 25.544335 124.049185 25.544335 99.50485 62.5245925 1.79605087 -0.006796 44 36 SH2540 2540 Pro2 5' flank 27.305452 106.8302 67.067826 1.826514229 -0.006814 78 101 SH19629 19629 RNA14 2.2 71.801808 172.236421 122.0191145 2.086427869 -0.00683 131 72 SH9960 9960 RUF5-1 RUF5-1 606 623 25.871497 101.122051 63.496774 1.802751661 -0.006843 74 7 SH26 26 Ala1 tRNA 26 40 26.701635 105.240623 65.971129 1.819353916 -0.006847 10 79 SH15520 15520 YBR048W_2_332790_333771_INTRON_46_556 intron 24.980316 120.210559 24.980316 96.230243 60.6052795 1.782510458 -0.006869 21 6 SH15434 15434 YBL072C_2_89435_88518_INTRON_1_308 intron 39.69351 164.716805 39.69351 126.023295 82.8584025 1.918336556 -0.006875 93 30 SH13229 13229 MT COX1 COX1-ai4 24.790266 118.591763 24.790266 94.801497 59.7958815 1.776671273 -0.006881 53 90 SH18646 18646 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.544283 133.875055 27.544283 107.330772 67.4375275 1.828901639 -0.006899 94 33 SH12567 12567 MT_15S MT_15S 24.496927 116.114991 24.496927 92.618064 58.5574955 1.767582494 -0.006912 148 99 SH13933 13933 MT COB Cytbi3 22.485 99.629319 22.485 78.144319 50.3146595 1.701694538 -0.006913 72 51 SH1566 1566 Leu4 tRNA 1 13 558.693802 855.090448 706.892125 2.849353144 -0.006923 40 64 SH7747 7747 snoRNA cluster1 intergenic/snR76 23.468026 107.510077 23.468026 85.042051 54.2550385 1.734440076 -0.006946 61 66 SH20319 20319 YER044C-A spliced 23.165591 82.846457 53.006024 1.724325229 -0.006971 185 60 SH19656 19656 SIR1 2.2 22.291567 76.870225 49.580896 1.695314371 -0.006986 21 65 SH15157 15157 MT tRNA Val 5' 24.385673 115.191746 24.385673 91.806073 58.095873 1.764145282 -0.007026 101 44 SH924 924 Glu3 3' flank 24.209169 90.509176 57.3591725 1.758602877 -0.007038 184 79 SH17426 17426 YIL133C_9_99416_98527_INTRON_32_321 5' exon 39.987619 165.450441 39.987619 126.462822 83.2252205 1.920254954 -0.007047 151 13 SH17201 17201 YHR021C_8_148660_147862_INTRON_4_553 3' exon 22.728506 101.509657 22.728506 79.781151 51.2548285 1.709734785 -0.007056 127 37 SH6029 6029 snR37 snR37 61 80 22.998824 81.655431 52.3271275 1.718726895 -0.00707 27 18 SH18103 18103 YLR367W_12_855877_857316_INTRON_698_1180 intron 23.677068 109.274179 23.677068 86.597111 55.1370895 1.741443837 -0.007156 179 103 SH3540 3540 Tyr2 5' flank 26.661605 105.067738 65.8646715 1.81865253 -0.007169 64 101 SH14620 14620 MT 21S rRNA Sce1 endonuc 25.316412 122.730124 25.316412 98.413712 61.865062 1.791445453 -0.007181 106 38 SH20855 20855 YLR061W spliced 27.593316 107.44898 67.521148 1.829439818 -0.007192 133 88 SH13504 13504 MT COX1 intronic 23.000246 103.676842 23.000246 81.676596 52.338421 1.718820616 -0.007199 158 25 SH19025 19025 YOR182C_15_678792_678190_INTRON_4_414 intron 26.908522 131.932819 26.908522 106.024297 66.4664095 1.822602219 -0.007213 155 14 SH4579 4579 U3b (snR17b) 451-462 + 3' 451 26.613786 104.833722 65.723754 1.817722361 -0.007219 70 54 SH18872 18872 YNR053C_14_723108_721117_INTRON_811_1341 intron 23.291257 106.071548 23.291257 83.780291 53.535774 1.728644086 -0.007247 65 37 SH3515 3515 Tyr1 3' flank 24.599705 93.414815 59.00726 1.770905449 -0.007262 108 50 SH3389 3389 Thr4 tRNA 31 47 33.700078 117.383098 75.541588 1.87818611 -0.007272 14 50 SH1203 1203 Ile1 5' flank 31.492283 114.219693 72.855988 1.862465252 -0.007281 190 35 SH20701 20701 YJL001W spliced 28.762469 109.851532 69.3070005 1.840777104 -0.007293 113 71 SH3390 3390 Thr4 tRNA 36 52 61.071753 156.778241 108.924997 2.037127557 -0.007305 174 71 SH404 404 Asn1 3' flank 23.968097 88.776142 56.3721195 1.751064364 -0.007338 112 14 SH7265 7265 snR65 3' 23.326357 84.044769 53.685563 1.729857512 -0.007354 142 31 SH880 880 Glu3 5' flank 24.423676 92.121293 58.2724845 1.765463535 -0.007391 20 35 SH17537 17537 YJL177W_10_90783_91654_INTRON_310_626 intron 22.865977 102.599851 22.865977 80.733874 51.7999255 1.714329135 -0.007399 99 18 SH469 469 Asp2 5' flank 27.829173 107.948542 67.8888575 1.8317985 -0.007406 97 48 SH21691 21691 copy of SH10451 32.379156 115.486956 73.933056 1.868838658 -0.00741 11 81 SH14321 14321 MT VAR1 includes 5’ processing site VAR1 24.59859 117.021444 24.59859 93.422854 59.010722 1.770930928 -0.007432 141 79 SH19295 19295 YPL175W_16_218629_220087_INTRON_18_117 3' exon 24.682577 117.731716 24.682577 94.049139 59.365858 1.773536749 -0.007432 7 10 SH19221 19221 YPL081W_16_404945_406039_INTRON_8_508 3' exon 33.140427 148.725555 33.140427 116.585128 74.8627775 1.874265936 -0.007436 185 72 SH5381 5381 snR31 5' 23.623683 86.229534 54.9266085 1.739782784 -0.007445 87 95 SH1048 1048 Gly3 5' flank 25.657747 100.11551 62.8866285 1.798558312 -0.007458 128 85 SH21089 21089 YNL012W spliced 49.385549 140.063301 94.724425 1.976461978 -0.007467 136 38 SH892 892 Glu3 5' flank 23.768587 87.30254 55.5355635 1.744571183 -0.007467 149 28 SH14883 14883 MT tRNA Ala tRNA 25.38245 123.144568 25.38245 98.762118 62.072284 1.792897726 -0.007488 23 45 SH19817 19817 Negative Control 49.131967 139.697744 94.4148555 1.975040333 -0.007507 203 93 SH1498 1498 Leu3 5' flank 23.817508 87.671738 55.744623 1.746202983 -0.007533 120 8 SH3633 3633 Val2 5' flank 24.846085 95.28607 60.0660775 1.778629272 -0.007553 96 102 SH20198 20198 YDR005C spliced 21.83411 73.927594 47.880852 1.68016187 -0.007575 21 101 SH7487 7487 snR71 snR71 51 70 24.477139 92.537215 58.507177 1.767209144 -0.007604 97 36 SH14148 14148 MT COB intronic 23.919857 111.36226 23.919857 88.442403 56.18113 1.74959047 -0.007625 205 90 SH3309 3309 Thr2 3' flank 24.370565 91.753076 58.0618205 1.763890649 -0.007647 62 32 SH9616 9616 RUF3 3' 24.647681 93.809755 59.228718 1.772532332 -0.007651 7 82 SH9340 9340 RUF1 RUF1 276 290 43.771505 131.974336 87.8729205 1.943855061 -0.007659 128 33 SH132 132 Arg1 36-50 36 50 34.805134 118.978101 76.8916175 1.885878997 -0.007679 203 90 SH7850 7850 snoRNA cluster1 snR74/intergenic 26.295969 128.588388 26.295969 103.292419 64.794194 1.811536092 -0.007694 79 98 SH1623 1623 Leu5 5' flank - tRNA1 1 22.004207 75.041704 48.5229555 1.685947246 -0.007701 109 62 SH8265 8265 snoRNA cluster4 snR67 26.745011 131.273602 26.745011 105.528591 66.136801 1.820443185 -0.007715 197 25 SH500 500 Asp2 61-72 + 3' flank 61 73 37.079298 122.255648 79.667473 1.901281042 -0.007724 82 12 SH2445 2445 Phe5 5' flank - tRNA12 12 31.912156 114.846364 73.37926 1.865573328 -0.007776 103 26 SH20981 20981 YML056C spliced 53.712489 146.274261 99.993375 1.999971227 -0.007798 82 38 SH12548 12548 MT_ORF6 + ORF7 (hypothetical) 3' 21.828832 94.74019 21.828832 73.911358 47.870095 1.680064289 -0.007816 195 16 SH12393 12393 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 47.973959 185.021002 47.973959 138.047043 93.010501 1.968531984 -0.007841 211 93 SH15701 15701 YBR220C_2_663261_662457_INTRON_302_722 intron 24.544473 116.604598 24.544473 93.060125 58.802299 1.769394306 -0.007848 175 101 SH4819 4819 snR5 3' 24.148178 90.141873 57.1450255 1.756978431 -0.007893 136 7 SH14553 14553 MT 21S rRNA 21S rRNA3 22.700673 101.362704 22.700673 79.662031 51.181352 1.709111754 -0.007896 83 102 SH12838 12838 MT COX1 COX1ai1 23.127017 104.77628 23.127017 82.649263 52.88814 1.723358294 -0.007909 26 68 SH21605 21605 copy of SH6881 24.929522 95.949471 60.4394965 1.781320838 -0.00791 88 25 SH14737 14737 MT tRNA cys; tRNA his 3' 22.284853 98.183603 22.284853 76.89875 49.5918015 1.695409885 -0.007924 64 24 SH14762 14762 MT ORF11; tRNA Leu; tRNA Gln ORF11 22.474548 99.630075 22.474548 78.155527 50.3150375 1.701697801 -0.007936 164 98 SH4637 4637 snR3 snR3 101 117 50.442609 141.62558 96.0340945 1.982425446 -0.007954 155 100 SH17925 17925 YLR078C_12_286560_285737_INTRON_4_92 intron 25.011786 120.591215 25.011786 96.579429 60.7956075 1.783872203 -0.007994 42 75 SH11652 11652 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5146 5161 57.87717 152.226504 105.051837 2.021403651 -0.008046 48 58 SH12775 12775 MT COX1 COX1ai1 28.860808 137.957132 28.860808 110.096324 69.478566 1.841850846 -0.008068 116 95 SH79 79 Ala2 31-45 31 45 33.874908 117.679523 75.7772155 1.879538643 -0.008068 173 12 SH2312 2312 Phe2 3' flank 24.591178 93.429317 59.0102475 1.770927436 -0.008075 57 62 SH20638 20638 YHR141C spliced 27.473429 107.250982 67.3622055 1.828416298 -0.008078 105 66 SH11007 11007 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1921 1934 3953.954349 4835.019455 4394.486902 3.642908174 -0.008118 61 10 SH21812 21812 copy of SH15492 30.509722 112.844064 71.676893 1.855379172 -0.008119 11 52 SH4090 4090 SRP RNA SRP RNA 341 355 468.365655 733.555547 600.960601 2.778846001 -0.00813 179 95 SH8028 8028 snoRNA cluster 2 snR55 24.508668 116.329724 24.508668 92.821056 58.664862 1.768378053 -0.00813 93 42 SH1878 1878 Leu9 3' flank 25.822866 100.983947 63.4034065 1.802112592 -0.008132 177 93 SH18149 18149 YLR406C_12_931752_931062_INTRON_58_406 intron 24.278498 114.398949 24.278498 91.120451 57.6994745 1.761171858 -0.008135 15 79 SH15126 15126 MT tRNA Phe 5' / tRNA 24.537501 116.573607 24.537501 93.036106 58.7868035 1.769279846 -0.008139 214 47 SH16504 16504 YER117W_5_396765_397649_INTRON_43_513 intron 24.424761 115.627814 24.424761 92.203053 58.313907 1.76577214 -0.008171 95 22 SH10303 10303 RUF7 RUF7 126 140 24.219787 90.69401 57.4568985 1.759342179 -0.008188 63 94 SH18106 18106 YLR367W_12_855877_857316_INTRON_698_1180 intron 25.052872 120.96384 25.052872 96.910968 60.98192 1.785201094 -0.008199 64 77 SH15020 15020 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.602669 124.505495 25.602669 99.902826 62.7527475 1.797632745 -0.008209 160 36 SH6643 6643 snR48 snR48 41 57 67.319736 165.87093 116.595333 2.066681167 -0.008256 207 98 SH658 658 Gln2 3' flank 24.010454 89.172783 56.5916185 1.752752115 -0.008286 21 90 SH13686 13686 MT ORF 5 (hypothetical) ORF5 24.35646 115.067092 24.35646 91.710632 58.033546 1.763679108 -0.008302 164 60 SH1211 1211 Ile1 tRNA 16 30 71.97233 172.632998 122.302664 2.087435917 -0.008349 27 32 SH2545 2545 Pro2 5' flank 22.886476 80.961269 51.9238725 1.715367075 -0.008358 151 91 SH15003 15003 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 23.332658 106.514081 23.332658 84.181423 53.7570405 1.730435351 -0.008386 187 61 SH13753 13753 MT COB Exon1 22.406218 99.144345 22.406218 77.738127 50.0721725 1.699596435 -0.008396 54 34 SH4426 4426 telomerase RNA telomerase 1166 1188 21.992959 75.026742 48.5098505 1.685829936 -0.008472 195 57 SH14890 14890 MT tRNA Ile 5' 23.956131 111.749587 23.956131 88.793456 56.3747935 1.751084964 -0.008488 153 30 SH1870 1870 Leu9 91-101 + 3' flank 91 23.190602 83.160393 53.1754975 1.725711562 -0.008504 201 83 SH9537 9537 RUF3 RUF3 71 90 22.279866 76.911378 49.595622 1.695443341 -0.008511 195 56 SH1638 1638 Leu5 tRNA-intron/exon 56 73 26.156175 102.667427 64.411801 1.808965443 -0.008545 12 48 SH5895 5895 snR36 5' 25.395738 98.910742 62.15324 1.793463773 -0.008562 58 23 SH15422 15422 YBL072C_2_89435_88518_INTRON_1_308 5' exon 24.009351 112.200117 24.009351 89.190766 56.6000585 1.75281688 -0.00857 121 27 SH2558 2558 Pro2 tRNA-exon/intron 26 38 24.424362 92.242082 58.333222 1.765915965 -0.008615 187 55 SH15598 15598 YBR089C-A_2_426588_426148_INTRON_1_114 intron 25.121773 121.598951 25.121773 97.477178 61.2994755 1.787456759 -0.00863 22 55 SH21378 21378 Lys3_4 spliced 46.709897 136.306892 91.5083945 1.961460936 -0.008635 112 42 SH21690 21690 copy of SH10450 28.767652 109.940597 69.3541245 1.841072294 -0.008639 48 22 SH7412 7412 snR69 5' 22.972131 81.598073 52.285102 1.71837796 -0.00864 3 38 SH5560 5560 snR33 snR33 86 100 791.023265 1162.704714 976.8639895 2.9898341 -0.008655 98 8 SH15134 15134 MT tRNA Phe 3' 24.7063 118.052479 24.7063 94.346179 59.5262395 1.774708447 -0.00867 86 60 SH21314 21314 YPL241C spliced 26.491247 104.343245 65.417246 1.815692257 -0.008676 159 39 SH14389 14389 MT 21S rRNA 5' 22.381879 98.983316 22.381879 77.601437 49.991658 1.698897541 -0.00871 73 37 SH19442 19442 YPR187W_16_911252_911795_INTRON_21_96 intron 23.410885 107.193391 23.410885 84.782506 54.0966955 1.733170737 -0.008728 164 84 SH7391 7391 snR68 3' 81.72453 186.900696 134.312613 2.128116798 -0.008746 189 71 SH16819 16819 YGL178W_7_167356_170575_INTRON_4_643 intron 27.457091 133.712647 27.457091 107.255556 67.3563235 1.828378374 -0.008754 188 18 SH20565 20565 YHR010W spliced 25.721356 100.534112 63.127734 1.8002202 -0.008787 61 93 SH9394 9394 RUF1 546-550 + 3' 546 363.012159 588.248364 475.6302615 2.677269478 -0.008822 11 102 SH1283 1283 Ile2 tRNA 111 123 28.943886 110.30929 69.626588 1.842775113 -0.00883 88 55 SH17157 17157 YHR012W_8_129473_130440_INTRON_49_167 3' exon 26.206818 128.149398 26.206818 102.94258 64.574699 1.81006239 -0.00884 37 58 SH7854 7854 snoRNA cluster1 intergenic 73.888133 248.367824 73.888133 175.479691 124.683912 2.09581042 -0.008846 60 91 SH418 418 Asp1 5' flank 23.314965 84.093958 53.7044615 1.730010366 -0.008856 71 27 SH20872 20872 YLR128W spliced 26.617619 104.989182 65.8034005 1.818248337 -0.008875 207 51 SH17849 17849 YKR094C_11_618384_617630_INTRON_9_376 3' exon 24.100115 112.981263 24.100115 89.881148 56.9906315 1.755803469 -0.008877 170 64 SH13192 13192 MT COX1 Exon4 24.108218 113.050227 24.108218 89.942009 57.0251135 1.756066158 -0.008894 165 6 SH13575 13575 MT COX1 Exon 6 24.670802 117.774723 24.670802 94.103921 59.3873615 1.773694031 -0.008911 211 102 SH7306 7306 snR66 snR66 21 36 45.989516 135.291252 90.640384 1.957321737 -0.008914 206 97 SH14116 14116 MT COB intronic 23.920183 111.484747 23.920183 88.564564 56.2423735 1.75006364 -0.008919 25 37 SH15498 15498 YBL092W_2_45639_46364_INTRON_1_333 intron 23.194524 105.423688 23.194524 83.229164 53.211844 1.726008309 -0.008968 54 57 SH16720 16720 YGL031C_7_438393_437938_INTRON_1_456 3' exon 32.926965 148.289544 32.926965 116.362579 74.644772 1.872999396 -0.008974 120 80 SH6439 6439 snR45 snR45 41 57 41.900788 129.388926 85.644857 1.932701289 -0.008983 160 87 SH6191 6191 snR40 snR40 16 30 44.048548 132.464919 88.2567335 1.94574785 -0.008984 19 60 SH14201 14201 MT COB exon6/3' 24.133001 113.266986 24.133001 90.133985 57.133493 1.756890777 -0.009009 31 21 SH4286 4286 telomerase RNA telomerase 466 480 59.551134 154.726168 107.138651 2.029946174 -0.009029 41 82 SH18847 18847 YNL312W_14_48286_49215_INTRON_8_115 intron 24.578424 117.004416 24.578424 93.425992 59.002208 1.770868264 -0.009032 9 63 SH21517 21517 copy of SH3112 24.138205 90.17539 57.1567975 1.757067887 -0.009045 9 54 SH3698 3698 Val3 5' flank 25.362688 98.785702 62.074195 1.792911096 -0.009047 187 50 SH1694 1694 Leu6 tRNA 36 51 25.677249 100.33672 63.0069845 1.799388695 -0.009047 141 74 SH14681 14681 MT 21S rRNA 21S rRNA4 24.484377 116.213189 24.484377 92.728812 58.6065945 1.767946486 -0.009056 68 31 SH20312 20312 YER007C-A spliced 24.411505 92.18961 58.3005575 1.765672708 -0.009066 41 52 SH12561 12561 MT_15S MT_15S 23.549169 108.376526 23.549169 85.827357 54.688263 1.73789413 -0.009072 32 6 SH7612 7612 snR189 snR189 131 150 22.486443 78.326214 50.4063285 1.702485065 -0.009096 130 50 SH20637 20637 YHR141C spliced 29.002557 110.446419 69.724488 1.843385334 -0.009143 139 22 SH5977 5977 snR36 341-355 + 3' 341 360 50.268777 141.463946 95.8663615 1.981666245 -0.009146 158 98 SH2676 2676 Pro4 tRNA-intron 46 60 3759.20225 4628.833843 4194.018047 3.622630295 -0.00917 99 13 SH676 676 Gln3 5' flank 22.311342 77.171274 49.741308 1.696717201 -0.00918 125 25 SH2905 2905 Pro8 tRNA 46 62 103.503382 218.920495 161.2119385 2.2073972 -0.009182 84 80 SH954 954 Gly1 tRNA 21 37 40.836479 127.852539 84.344509 1.926056814 -0.00919 104 9 SH20008 20008 YBR082C spliced 28.833532 110.106622 69.470077 1.84179778 -0.009191 13 85 SH1691 1691 Leu6 tRNA 21 35 87.429719 195.310999 141.370359 2.150358361 -0.009199 173 63 SH21753 21753 copy of SH12974 24.101439 89.923125 57.012282 1.755968425 -0.009227 44 96 SH14406 14406 MT 21S rRNA 21S rRNA3 26.361457 129.104984 26.361457 103.743527 65.052492 1.813263938 -0.009241 77 70 SH20485 20485 YGL232W spliced 29.543833 111.480656 70.5122445 1.848264539 -0.009263 210 88 SH5794 5794 snR35 snR35 156 177 22.450326 78.099467 50.2748965 1.701351185 -0.009267 197 37 SH18705 18705 YNL130C_14_381156_379555_INTRON_30_470 intron 26.487934 129.865318 26.487934 104.377384 65.432659 1.815794569 -0.009294 58 56 SH20249 20249 YDR381C-A spliced 24.508384 92.931273 58.7198285 1.768784778 -0.009309 96 27 SH8984 8984 snR17a / U3a U3a 206 222 36.729456 121.831355 79.2804055 1.899165863 -0.009326 98 49 SH21181 21181 YOL047C spliced 24.275325 91.208819 57.742072 1.761492364 -0.009329 49 34 SH14796 14796 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys 26.802727 131.724393 26.802727 105.921666 66.3621965 1.821920752 -0.009334 7 69 SH17530 17530 YJL177W_10_90783_91654_INTRON_310_626 5' exon 23.388015 107.057532 23.388015 84.669517 54.028766 1.732625049 -0.009339 79 73 SH4341 4341 telomerase RNA telomerase 741 758 22.121724 75.936558 49.029141 1.690454284 -0.009361 25 11 SH4103 4103 SRP RNA SRP RNA 406 422 25.046753 96.981857 61.014305 1.785431669 -0.009378 171 87 SH609 609 Gln1 3' flank 24.030181 89.422122 56.7261515 1.753783321 -0.009438 68 103 SH21185 21185 YOL047C spliced 26.496477 104.43509 65.4657835 1.81601437 -0.009479 126 78 SH14351 14351 MT ORF9 and ORF10 (hypothetical) 5' 21.762198 94.366687 21.762198 73.604489 47.6833435 1.6783667 -0.009483 204 24 SH1228 1228 Ile1 3' flank 24.143939 90.25932 57.2016295 1.757408401 -0.009498 166 40 SH17074 17074 YGR225W_7_945138_946919_INTRON_1184_1276 intron 24.494873 116.344984 24.494873 92.850111 58.672492 1.768434534 -0.009511 157 18 SH630 630 Gln2 5' flank 24.16385 90.406571 57.2852105 1.758042513 -0.009512 28 59 SH3284 3284 Thr2 tRNA 21 33 28.666272 109.785479 69.2258755 1.840268457 -0.009515 141 63 SH2364 2364 Phe3 3' flank 1307.285404 1821.935373 1564.610389 3.194406209 -0.009537 80 97 SH1996 1996 Lys3 5' flank 25.651828 100.2519 62.951864 1.799008594 -0.009565 47 95 SH19878 19878 Negative Control 25.906831 101.513692 63.7102615 1.804209388 -0.009571 78 13 SH13251 13251 MT COX1 COX1-ai4 23.724678 109.897441 23.724678 87.172763 55.4487205 1.743891529 -0.009613 143 59 SH16181 16181 YDR367W_4_1212837_1213603_INTRON_31_131 5' exon 24.878266 119.609856 24.878266 95.73159 60.304928 1.780352803 -0.009627 92 68 SH18539 18539 YMR230W_13_732413_733140_INTRON_53_462 intron 25.318502 122.934313 25.318502 98.615811 61.9671565 1.792161568 -0.009662 36 70 SH5610 5610 snR34 5' 25.563375 99.824871 62.694123 1.797226832 -0.009688 191 104 SH12715 12715 MT ORF 8 (hypothetical) ORF8 / 3' 23.30158 106.375695 23.30158 84.074115 53.6878475 1.729875992 -0.009738 66 75 SH3315 3315 Thr3 5' flank 23.844003 88.075979 55.959991 1.747877636 -0.009786 159 48 SH8651 8651 snR19 / U1 RNA 3' 24.486435 92.814798 58.6506165 1.768272582 -0.009798 184 90 SH13965 13965 MT COB Cytbi3 24.581581 117.105223 24.581581 93.523642 59.0526115 1.771239108 -0.009805 59 92 SH8211 8211 snoRNA cluster 3; snR51 24.98746 120.56285 24.98746 96.57539 60.781425 1.783770878 -0.009813 190 95 SH11551 11551 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4641 4659 40.126065 126.846845 83.486455 1.92161602 -0.009824 69 32 SH10321 10321 RUF7 RUF7 216 233 24.619219 93.806741 59.21298 1.772416918 -0.009827 84 83 SH12064 12064 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7206 7225 25.789801 100.955256 63.3725285 1.801901035 -0.009834 129 30 SH11493 11493 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4351 4368 1838.863094 2470.560937 2154.712016 3.333389233 -0.009843 193 14 SH15837 15837 YDL075W_4_322225_322987_INTRON_58_478 intron 23.967273 111.970726 23.967273 89.003453 56.485363 1.751935924 -0.009873 134 14 SH4667 4667 snR3 3' 22.243145 76.775916 49.5095305 1.694688808 -0.009888 57 14 SH17616 17616 YJR021C_10_469271_468247_INTRON_317_396 intron 29.2885 139.356933 29.2885 111.068433 70.1784665 1.846203874 -0.009897 174 27 SH18351 18351 YML124C_13_23684_22049_INTRON_26_323 intron/exon 24.690901 118.040681 24.690901 94.34978 59.5203405 1.774665407 -0.009899 139 83 SH12761 12761 MT COX1 COX1ai1 70.979271 241.300487 70.979271 171.321216 121.1502435 2.083324291 -0.009915 41 39 SH3296 3296 Thr2 3' flank 22.904994 81.2259 52.065447 1.716549601 -0.009917 68 99 SH6274 6274 snR42 snR42 151 173 23.372498 84.607579 53.9900385 1.732313637 -0.00992 136 90 SH8784 8784 LSR1 / U2 RNA U2 561 580 20.862423 68.045312 44.4538675 1.647909551 -0.009939 195 24 SH12002 12002 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6896 6913 26.028882 102.150697 64.0897895 1.806788845 -0.009973 80 3 SH12623 12623 MT_15S MT_15S 125.92105 376.33021 125.92105 251.40916 188.665105 2.275691582 -0.009994 127 56 SH3097 3097 Ser3 3' flank 25.977548 101.898247 63.9378975 1.805758351 -0.009999 199 90 SH439 439 Asp1 tRNA 16 28 2673.32529 3435.033428 3054.179359 3.484894538 -0.010037 30 87 SH6020 6020 snR37 snR37 16 38 23.450816 85.195207 54.3230115 1.734983838 -0.010082 77 67 SH6980 6980 snR60 5' 24.294895 91.424646 57.8597705 1.762376707 -0.010093 173 62 SH6701 6701 snR49 snR49 31 47 107.722341 225.188448 166.4553945 2.221297874 -0.010098 128 12 SH15360 15360 YBL026W_2_170585_171000_INTRON_55_182 intron/exon 31.272126 144.331689 31.272126 114.059563 72.6658445 1.861330325 -0.010112 67 68 SH19524 19524 ACT1 25.515831 99.623983 62.569907 1.796365509 -0.01012 101 49 SH13830 13830 MT COB Cytbi2 22.290192 98.397818 22.290192 77.107626 49.698909 1.696346855 -0.010159 138 13 SH1678 1678 Leu6 5' flank 22.485614 78.406145 50.4458795 1.702825698 -0.010176 197 89 SH19416 19416 YPR132W_16_794960_795762_INTRON_66_430 exon/intron 26.260672 128.579796 26.260672 103.319124 64.789898 1.811507296 -0.010187 128 51 SH4098 4098 SRP RNA SRP RNA 381 393 37.933995 123.674069 80.804032 1.907433032 -0.010188 95 84 SH15983 15983 YDL136W_4_217600_218367_INTRON_4_408 intron 22.62704 100.982338 22.62704 79.355298 50.991169 1.707494969 -0.010226 32 59 SH13742 13742 MT COB Exon1 24.912743 119.965813 24.912743 96.05307 60.4829065 1.781632653 -0.010248 173 55 SH16061 16061 YDL219W_4_65243_65766_INTRON_66_136 intron 24.60166 117.318859 24.60166 93.717199 59.1594295 1.772023977 -0.01026 105 2 SH6326 6326 snR42 3' 24.7276 94.662373 59.6949865 1.775937858 -0.010285 189 56 SH4318 4318 telomerase RNA telomerase 626 638 25.313627 98.640784 61.9772055 1.79223199 -0.010295 34 24 SH3735 3735 Val4 5' flank 24.604507 93.742388 59.1734475 1.772126872 -0.010301 107 2 SH12613 12613 MT_15S MT_15S 28.716922 137.652838 28.716922 109.935916 69.326419 1.840898768 -0.010327 73 101 SH1553 1553 Leu4 5' flank 23.816167 87.918582 55.8673745 1.747158262 -0.01033 32 62 SH15424 15424 YBL072C_2_89435_88518_INTRON_1_308 exon/intron 27.16751 132.910987 27.16751 106.743477 66.9554935 1.825786215 -0.010356 2 9 SH4186 4186 telomerase RNA 5' 22.412955 77.937155 50.175055 1.700487857 -0.010361 10 60 SH7308 7308 snR66 snR66 31 47 24.470577 92.750713 58.610645 1.767976501 -0.010363 83 41 SH1682 1682 Leu6 5' flank 27.652794 107.754762 67.703778 1.830612904 -0.010389 198 35 SH14546 14546 MT 21S rRNA 21S rRNA3 26.551283 130.334285 26.551283 104.783002 65.6671425 1.817348118 -0.010389 44 6 SH1244 1244 Ile2 5' flank 31.502134 114.40648 72.954307 1.863050936 -0.010405 144 61 SH20599 20599 YHR041C spliced 43.73639 132.110012 87.923201 1.944103491 -0.010417 102 104 SH15179 15179 MT COX3 cox3 219.341567 602.917495 219.341567 384.575928 301.9587475 2.479947615 -0.010426 171 44 SH9688 9688 RUF4 RUF4 216 232 26.831167 106.043759 66.437463 1.82241304 -0.010442 135 74 SH18875 18875 YNR053C_14_723108_721117_INTRON_811_1341 intron 23.373435 107.034218 23.373435 84.660783 54.017109 1.732531337 -0.010444 163 100 SH10480 10480 RUF8 RUF8 326 342 29.575824 111.592355 70.5840895 1.848706817 -0.01045 85 19 SH15694 15694 YBR220C_2_663261_662457_INTRON_302_722 exon/intron 27.808216 134.888306 27.808216 108.08009 67.944153 1.832152089 -0.010455 28 67 SH10063 10063 RUF6 RUF6 161 180 27.17987 106.776269 66.9780695 1.825932626 -0.010479 142 100 SH19276 19276 YPL143W_16_282121_282969_INTRON_20_544 intron 23.038932 104.276757 23.038932 82.237825 52.6383785 1.721302503 -0.010502 10 24 SH15420 15420 YBL059W_2_110555_111205_INTRON_287_355 3' exon 25.801889 125.870865 25.801889 101.068976 63.4354325 1.802331905 -0.010514 123 98 SH2035 2035 Lys3 3' flank 24.476441 92.808797 58.642619 1.768213358 -0.010515 110 99 SH16969 16969 YGR034W_7_555923_556666_INTRON_20_496 intron 22.313571 98.604106 22.313571 77.290535 49.802053 1.697247246 -0.010521 170 8 SH11028 11028 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2026 2044 38173.09401 35513.74012 36843.41706 4.566359902 -0.010531 137 72 SH7147 7147 snR63 241-255 + 3' 241 25.574095 99.943985 62.75904 1.797676292 -0.010533 96 52 SH2550 2550 Pro2 5' flank - tRNA2 2 28.077051 108.638948 68.3579995 1.834789345 -0.010536 145 82 SH19653 19653 SIR1 2.2 25.011259 96.828533 60.919896 1.784759153 -0.010545 182 4 SH5552 5552 snR33 snR33 46 65 24.046241 89.641887 56.844064 1.75468512 -0.010554 3 102 SH8875 8875 LSR1 / U2 RNA U2 1016 1032 213.704943 376.654402 295.1796725 2.470086447 -0.010577 112 8 SH5198 5198 snR13 3' 23.681851 86.943711 55.312781 1.742825494 -0.010584 10 55 SH17555 17555 YJL189W_10_75932_76473_INTRON_7_392 intron 29.400251 139.735273 29.400251 111.335022 70.3676365 1.847372964 -0.0106 120 54 SH17140 17140 YHR010W_8_126513_127484_INTRON_32_592 intron 25.453141 123.805469 25.453141 99.352328 62.4027345 1.795203621 -0.010602 24 65 SH13876 13876 MT COB intronic 24.474794 116.288411 24.474794 92.813617 58.6442055 1.768225107 -0.010695 211 35 SH6985 6985 snR60 snR60 6 24 320.685297 529.122571 424.903934 2.628290752 -0.010698 164 41 SH4551 4551 U3b (snR17b) U3b 311 330 24.365927 92.007257 58.186592 1.764822921 -0.010707 39 92 SH2111 2111 Met1 5' flank 35.74011 120.463768 78.101939 1.892661816 -0.010713 182 95 SH2579 2579 Pro2 3' flank 24.620598 93.904701 59.2626495 1.772781064 -0.010738 26 41 SH7735 7735 snoRNA cluster1 intergenic 23.141945 105.144348 23.141945 83.002403 53.072174 1.724866878 -0.010739 41 26 SH7193 7193 snR64 snR64 31 47 68.790859 168.213082 118.5019705 2.073725572 -0.010741 34 68 SH11833 11833 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6051 6064 45534.0277 41478.69163 43506.35966 4.638552746 -0.010747 173 26 SH12336 12336 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.618354 137.38129 28.618354 109.762936 69.190645 1.840047379 -0.010803 115 57 SH16085 16085 YDR025W_4_491510_492319_INTRON_46_384 intron 27.963216 135.38394 27.963216 108.420724 68.19197 1.833733237 -0.010817 139 17 SH417 417 Asp1 5' flank 22.650007 79.556785 51.103396 1.708449761 -0.010818 151 76 SH15443 15443 YBL087C_2_60732_59815_INTRON_43_546 5' exon 246.719202 669.323066 246.719202 423.603864 335.161533 2.525254168 -0.010826 45 51 SH4790 4790 snR5 snR5 121 140 24.777415 95.090519 59.933967 1.777673024 -0.010839 203 36 SH9638 9638 RUF4 5' 26.715146 105.638261 66.1767035 1.82070513 -0.010839 166 48 SH16646 16646 YFR031C-A_6_221405_220494_INTRON_5_151 exon/intron 28.421527 136.785233 28.421527 109.363706 68.8926165 1.838172679 -0.01085 115 25 SH12862 12862 MT COX1 COX1ai1 22.615278 100.942821 22.615278 79.327543 50.9714105 1.707326652 -0.010864 191 97 SH11330 11330 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3536 3552 33062.07335 31301.52007 32181.79671 4.507610287 -0.010869 7 102 SH7366 7366 snR68 snR68 51 70 22.892395 81.21903 52.0557125 1.716468395 -0.010898 101 48 SH20200 20200 YDR025W spliced 26.405749 104.09925 65.2524995 1.814597152 -0.010899 174 72 SH17862 17862 YLL050C_12_40413_39803_INTRON_15_193 exon/intron 25.960049 126.843672 25.960049 101.883623 63.921836 1.805649241 -0.010902 36 92 SH8733 8733 LSR1 / U2 RNA U2 306 325 22.320543 77.36825 49.8443965 1.697616342 -0.010926 132 84 SH2957 2957 Ser1 tRNA 16 32 273.348538 461.640004 367.494271 2.565250573 -0.010945 184 82 SH13331 13331 MT COX1 COX1-ai5a 24.161037 113.680522 24.161037 90.519485 57.340261 1.758459665 -0.010951 61 98 SH14133 14133 MT COB intronic 23.537862 108.452182 23.537862 85.91432 54.726091 1.738194428 -0.010967 128 25 SH4787 4787 snR5 snR5 106 125 23.189622 83.367768 53.278695 1.726553579 -0.010967 115 69 SH20067 20067 YBR230C spliced 31.862768 114.953456 73.408112 1.865744054 -0.01097 49 92 SH8009 8009 snoRNA cluster 2 intergenic 23.162953 105.339188 23.162953 83.176235 53.169594 1.725663344 -0.010988 67 41 SH13631 13631 MT ATP6 ATP6 23.053772 104.440764 23.053772 82.386992 52.720382 1.721978548 -0.010992 133 92 SH12728 12728 MT COX1 Exon1 26.167234 128.089437 26.167234 102.922203 64.5447185 1.809860711 -0.011023 23 44 SH17905 17905 YLR061W_12_263195_263949_INTRON_13_401 intron 27.707847 134.613071 27.707847 107.905224 67.8065355 1.831271555 -0.011026 167 43 SH20508 20508 YGR027C spliced 24.527804 93.240974 58.884389 1.770000173 -0.011039 52 20 SH31 31 Ala1 tRNA 51 63 27.012391 106.459909 66.73615 1.824361149 -0.011079 76 94 SH19311 19311 YPL198W_16_173151_174701_INTRON_12_420 intron 24.41811 115.847252 24.41811 92.429142 58.423626 1.766588507 -0.011079 54 37 SH1808 1808 Leu8 tRNA 66 80 90.504735 199.997995 145.251365 2.162120222 -0.011091 23 28 SH4595 4595 U3b (snR17b) 3' 22.29801 77.234407 49.7662085 1.696934555 -0.011123 75 31 SH13895 13895 MT COB intronic 23.649651 109.40515 23.649651 86.755499 55.202575 1.741959336 -0.011138 101 71 SH18669 18669 YNL112W_14_413636_416278_INTRON_1274_2275 intron 24.364915 115.405381 24.364915 92.040466 58.2026905 1.764943061 -0.011138 159 73 SH784 784 Glu1 5' flank 24.560246 93.492642 59.026444 1.77104662 -0.011141 152 81 SH8878 8878 LSR1 / U2 RNA U2 1031 1043 25.515605 99.703551 62.609578 1.796640777 -0.011151 158 8 SH1437 1437 Leu2 5' flank 24.995154 96.768814 60.881984 1.784488797 -0.011175 110 5 SH14783 14783 MT ORF11; tRNA Leu; tRNA Gln 3' 24.132967 113.470355 24.132967 90.337388 57.2351775 1.757663034 -0.011209 85 76 SH14411 14411 MT 21S rRNA 21S rRNA3 368.062577 963.318167 368.062577 596.25559 482.1590835 2.683190353 -0.011224 12 94 SH16971 16971 YGR034W_7_555923_556666_INTRON_20_496 intron 22.896285 103.171527 22.896285 81.275242 52.0857635 1.716719035 -0.011231 49 65 SH11856 11856 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6166 6184 31446.34445 29958.66964 30702.50705 4.48717384 -0.011236 48 41 SH12370 12370 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.015141 143.768104 31.015141 113.752963 72.384052 1.859642891 -0.011287 16 3 SH8909 8909 LSR1 / U2 RNA 3' 23.115655 82.86067 52.9881625 1.72417886 -0.011299 112 33 SH19118 19118 YPL031C_16_493033_492014_INTRON_18_119 intron 30.412924 142.289694 30.412924 112.87677 71.644847 1.85518496 -0.011315 194 99 SH16028 16028 YDL191W_4_117665_118518_INTRON_4_494 5' exon 44.602944 177.043684 44.602944 133.44074 89.021842 1.949496576 -0.011318 2 40 SH9821 9821 RUF5-1 5' 24.05529 89.780506 56.917898 1.755248853 -0.011342 199 3 SH4956 4956 snR9 186-187 + 3' 186 24.126121 90.301636 57.2138785 1.757501389 -0.011366 9 69 SH15696 15696 YBR220C_2_663261_662457_INTRON_302_722 intron 26.670618 131.130424 26.670618 105.459806 66.065212 1.819972833 -0.011371 181 20 SH12712 12712 MT ORF 8 (hypothetical) ORF8 23.032734 104.304803 23.032734 82.272069 52.6524015 1.721418184 -0.011419 86 72 SH18426 18426 YMR142C_13_551206_550205_INTRON_5_406 5' exon 62.789476 221.37845 62.789476 159.588974 111.189225 2.046062703 -0.011469 31 57 SH17189 17189 YHR021C_8_148660_147862_INTRON_4_553 intron 24.789324 119.031557 24.789324 95.242233 60.0157785 1.778265444 -0.011474 119 48 SH6234 6234 snR42 5' 32.741638 116.23449 74.488064 1.872086687 -0.011476 16 13 SH19338 19338 YPL241C_16_96258_95372_INTRON_26_105 intron 25.722045 125.473645 25.722045 100.7516 63.2368225 1.80097004 -0.011498 174 64 SH4675 4675 snR4 5' 23.069098 82.542559 52.8058285 1.722681861 -0.011512 86 62 SH12438 12438 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.272168 128.75891 26.272168 103.486742 64.879455 1.812107193 -0.011548 11 6 SH19274 19274 YPL143W_16_282121_282969_INTRON_20_544 intron 23.854404 111.172081 23.854404 88.317677 56.0860405 1.748854781 -0.011563 198 37 SH20361 20361 YER131W spliced 44.396177 133.15629 88.7762335 1.948296715 -0.011599 148 23 SH1162 1162 His1 tRNA 31 43 68.925757 168.485877 118.705817 2.074472001 -0.011603 54 64 SH13795 13795 MT COB intronic 24.084071 113.101056 24.084071 90.016985 57.050528 1.756259668 -0.011621 8 10 SH19988 19988 YBL092W spliced 41.620167 129.156169 85.388168 1.931397696 -0.011629 170 23 SH256 256 Arg3 3' flank 235.109332 407.279867 321.1945995 2.506768235 -0.011638 52 102 SH7370 7370 snR68 snR68 71 95 24.057196 89.822266 56.939731 1.755415411 -0.011644 106 68 SH10589 10589 RUF8 RUF8 871 890 22.570175 79.088133 50.829154 1.706112881 -0.01165 176 45 SH5606 5606 snR34 5' 24.970435 96.62971 60.8000725 1.783904097 -0.011663 11 70 SH10261 10261 RUF7 5' 24.945922 96.444491 60.6952065 1.783154393 -0.01167 161 43 SH3448 3448 Trp1 tRNA 71 85 236.731696 409.582959 323.1573275 2.509414008 -0.01167 209 41 SH6510 6510 snR46 snR46 41 58 24.476179 92.917361 58.69677 1.768614203 -0.011675 101 9 SH16756 16756 YGL076C_7_365994_364333_INTRON_565_1032 3' exon 26.844927 131.988618 26.844927 106.143691 66.494309 1.822784477 -0.011703 207 28 SH16514 16514 YER117W_5_396765_397649_INTRON_43_513 intron 25.435011 123.786783 25.435011 99.351772 62.3933915 1.795138593 -0.011743 64 38 SH19635 19635 RNA14 2.2 26.543264 104.85992 65.701592 1.817575893 -0.011811 52 17 SH18447 18447 YMR142C_13_551206_550205_INTRON_5_406 intron/exon 22.775036 102.254884 22.775036 80.479848 51.627442 1.712880607 -0.011824 52 35 SH5646 5646 snR34 snR34 151 170 26.31362 103.715828 65.014724 1.813011723 -0.011826 89 27 SH14761 14761 MT ORF11; tRNA Leu; tRNA Gln ORF11 22.556388 100.566905 22.556388 79.010517 50.7834525 1.705722223 -0.011834 136 56 SH15469 15469 YBL087C_2_60732_59815_INTRON_43_546 intron/exon 22.233127 98.097377 22.233127 76.86425 49.5486885 1.695032164 -0.011881 63 65 SH4174 4174 telomerase RNA 5' 24.423509 92.548034 58.4857715 1.767050223 -0.011909 188 71 SH6169 6169 snR40 5' 23.502532 85.739138 54.620835 1.737358335 -0.011914 126 89 SH2078 2078 Lys4 tRNA-intron/exon 56 72 134.963517 264.651157 199.807337 2.300611432 -0.011935 41 12 SH11667 11667 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5221 5234 32.515003 115.932542 74.2237725 1.870543024 -0.011954 90 5 SH13563 13563 MT COX1 Exon 6 23.987587 112.330368 23.987587 89.342781 56.665184 1.753316303 -0.011963 212 93 SH20308 20308 YER003C spliced 26.651609 105.414306 66.0329575 1.819760749 -0.01197 175 56 SH16374 16374 YER003C_5_159117_157735_INTRON_32_124 intron 22.52561 100.341798 22.52561 78.816188 50.670899 1.70475861 -0.01198 38 22 SH16572 16572 YER133W_5_432491_433954_INTRON_178_702 3' exon 24.998461 120.873696 24.998461 96.875235 60.936848 1.784879986 -0.011993 46 83 SH12810 12810 MT COX1 COX1ai1 23.543455 108.592761 23.543455 86.049306 54.7963805 1.738751873 -0.012009 25 12 SH18673 18673 YNL112W_14_413636_416278_INTRON_1274_2275 intron 22.836091 102.748822 22.836091 80.912731 51.874411 1.714953179 -0.012038 29 87 SH21687 21687 copy of SH10242 23.433321 85.241485 54.337403 1.735098878 -0.012041 92 58 SH11553 11553 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4651 4669 250.287637 429.039991 339.663814 2.531049282 -0.012108 74 103 SH20043 20043 YBR189W spliced 38.386751 124.459665 81.423208 1.910748209 -0.012119 201 16 SH18094 18094 YLR367W_12_855877_857316_INTRON_698_1180 intron 23.56723 108.80472 23.56723 86.23749 54.90236 1.739591013 -0.01215 64 48 SH13218 13218 MT COX1 COX1-ai4 34.850657 153.154823 34.850657 119.304166 77.0774115 1.886927121 -0.012171 12 88 SH273 273 Arg4 5' flank 23.507216 85.797368 54.652292 1.73760838 -0.012179 154 27 SH1395 1395 Leu1 tRNA-intron 46 58 27.197245 106.909 67.0531225 1.826419007 -0.01218 55 12 SH14554 14554 MT 21S rRNA 21S rRNA3 31.528078 145.070053 31.528078 114.541975 73.0350265 1.863531191 -0.012181 83 48 SH20458 20458 YGL178W spliced 25.49078 99.661469 62.5761245 1.796408663 -0.012181 28 102 SH21146 21146 YNL246W spliced 30.593309 113.188783 71.891046 1.856674803 -0.012193 213 71 SH16860 16860 YGL187C_7_150529_149708_INTRON_1_342 intron 24.533021 116.925254 24.533021 93.392233 58.962627 1.770576825 -0.012212 63 85 SH16441 16441 YER074W_5_306319_307192_INTRON_4_469 intron 22.021561 96.519554 22.021561 75.497993 48.759777 1.688061711 -0.012216 69 71 SH6219 6219 snR40 3' 25.7152 100.77465 63.244925 1.801025682 -0.012218 159 16 SH16210 16210 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 28.346858 136.637612 28.346858 109.290754 68.818806 1.837707133 -0.012228 206 66 SH7420 7420 snR69 snR69 1 17 109.32439 227.817976 168.571183 2.226783335 -0.012235 146 62 SH18460 18460 YMR143W_13_551927_552902_INTRON_25_568 intron 24.945725 120.44631 24.945725 96.500585 60.723155 1.783354328 -0.012251 19 11 SH7684 7684 snoRNA cluster1 intergenic 34.431184 152.147013 34.431184 118.715829 76.5735065 1.884078535 -0.012267 52 39 SH15896 15896 YDL083C_4_307788_306925_INTRON_25_456 5' exon 52.791816 197.083645 52.791816 145.291829 99.0418225 1.995818623 -0.012276 80 101 SH18148 18148 YLR406C_12_931752_931062_INTRON_58_406 intron 23.447664 107.815531 23.447664 85.367867 54.4077655 1.73566089 -0.012276 193 99 SH7367 7367 snR68 snR68 56 75 23.219349 83.698245 53.458797 1.728019181 -0.012276 103 48 SH8847 8847 LSR1 / U2 RNA U2 876 892 184.662976 335.76489 260.213933 2.415330547 -0.012284 107 44 SH7705 7705 snoRNA cluster1 intergenic/snR77 24.043326 112.824093 24.043326 89.780767 56.9120465 1.755204203 -0.012295 167 56 SH7513 7513 snR79 5' 28.577902 109.770079 69.1739905 1.83994283 -0.012343 33 87 SH3205 3205 Ser5 3' flank 66.138413 164.530041 115.334227 2.061958209 -0.012347 22 59 SH20009 20009 YBR082C spliced 30.092554 112.461963 71.2772585 1.852950987 -0.012353 159 53 SH20762 20762 YJR145C spliced 1236.792274 1736.725911 1486.759093 3.172240603 -0.012368 47 8 SH21888 21888 copy of SH18603 96.605469 209.171471 152.88847 2.184374735 -0.012373 40 47 SH16439 16439 YER074W_5_306319_307192_INTRON_4_469 intron 26.348643 129.286619 26.348643 103.937976 65.1433095 1.813869818 -0.012411 34 48 SH344 344 Arg5 tRNA 56 68 34.446252 118.746537 76.5963945 1.884208327 -0.012427 185 68 SH7011 7011 snR60 3' 25.728037 100.855598 63.2918175 1.801347567 -0.012438 179 96 SH9589 9589 RUF3 RUF3 331 350 24.528498 93.381511 58.9550045 1.770520677 -0.012453 4 34 SH14016 14016 MT COB Exon4 23.656954 109.587744 23.656954 86.93079 55.293872 1.742677003 -0.012472 139 81 SH9757 9757 RUF4 RUF4 561 577 28.455309 109.527172 68.9912405 1.838793954 -0.012474 13 69 SH6788 6788 snR50 3' 22.833725 80.933162 51.8834435 1.715028792 -0.012479 7 87 SH20238 20238 YDR305C spliced 25.798172 101.207003 63.5025875 1.802791422 -0.012485 132 86 SH14822 14822 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly 25.195404 122.423819 25.195404 98.228415 61.7119095 1.790368985 -0.012497 8 12 SH16200 16200 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 29.219474 139.302238 29.219474 111.082764 70.151119 1.846034603 -0.012503 102 57 SH19565 19565 AEP2/ATP13 0.6 33.38864 117.234914 75.311777 1.876862895 -0.012509 114 72 SH8480 8480 snoRNA cluster 5 3' 24.68237 118.221195 24.68237 94.538825 59.6105975 1.775323475 -0.01251 182 27 SH11226 11226 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3016 3034 25.623678 100.346329 62.9850035 1.799237158 -0.012533 181 59 SH18787 18787 YNL301C_14_64561_63569_INTRON_113_544 intron 30.446315 142.440516 30.446315 112.994201 71.720258 1.855641843 -0.012569 95 40 SH2772 2772 Pro6 5' flank 27.855608 108.299719 68.0776635 1.833004642 -0.012574 101 100 SH19334 19334 YPL241C_16_96258_95372_INTRON_26_105 5' exon 26.6552 131.138541 26.6552 105.483341 66.0692705 1.819999512 -0.012587 75 81 SH17498 17498 YJL041W_10_365480_368069_INTRON_2_119 intron 23.396158 107.420159 23.396158 85.024001 54.2100795 1.734080044 -0.012661 77 68 SH12013 12013 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6951 6973 24.153569 90.627806 57.3906875 1.758841427 -0.012707 91 61 SH4753 4753 snR5 5' 25.92278 101.84563 63.884205 1.805393495 -0.012741 24 80 SH14192 14192 MT COB Exon6 37.457883 159.586673 37.457883 123.12879 80.2933365 1.904679505 -0.012747 202 97 SH4396 4396 telomerase RNA telomerase 1016 1037 23.400448 85.06325 54.231849 1.734254412 -0.012749 210 98 SH1558 1558 Leu4 5' flank 24.208143 91.03443 57.6212865 1.76058295 -0.012759 110 90 SH13463 13463 MT COX1 intronic 23.005066 104.193203 23.005066 82.188137 52.5966015 1.720957683 -0.012762 74 51 SH21134 21134 YNL147W spliced 47.434468 137.637753 92.5361105 1.966311241 -0.01283 48 8 SH20636 20636 YHR141C spliced 24.980691 96.82359 60.9021405 1.784632557 -0.012832 94 57 SH20707 20707 YJL024C spliced 25.702944 100.763729 63.2333365 1.800946098 -0.012848 147 13 SH16612 16612 YFL034C-B_6_63992_63015_INTRON_21_134 3' exon 34.254604 151.753317 34.254604 118.498713 76.3766585 1.882960654 -0.012856 97 41 SH2434 2434 Phe5 5' flank 25.859617 101.545606 63.7026115 1.804157237 -0.01291 126 25 SH8230 8230 snoRNA cluster 3; 3' 26.729998 131.622608 26.729998 105.89261 66.311304 1.821587568 -0.013009 2 53 SH13740 13740 MT COB Exon1 23.763245 110.534671 23.763245 87.771426 55.7673355 1.746379895 -0.013021 178 36 SH16344 16344 YDR500C_4_1450856_1450201_INTRON_8_396 intron 29.83765 140.958946 29.83765 112.121296 70.979473 1.851132771 -0.013029 132 92 SH14527 14527 MT 21S rRNA 21S rRNA3 24.234933 114.492287 24.234933 91.257354 57.7461435 1.761522986 -0.01303 199 46 SH11689 11689 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5331 5348 40577.57165 37535.67341 39056.62253 4.591694684 -0.013036 33 92 SH14716 14716 MT tRNA cys; tRNA his 5' 24.842819 119.642862 24.842819 95.800043 60.321431 1.780471636 -0.013048 3 59 SH1453 1453 Leu2 tRNA-exon/intron 36 53 29.275919 111.229925 70.252922 1.846664392 -0.013065 12 19 SH6712 6712 snR49 snR49 86 103 49.1964 140.199398 94.697899 1.976340344 -0.013069 99 33 SH20081 20081 YCR031C spliced 27.885622 108.390227 68.1379245 1.833388901 -0.01307 59 83 SH5009 5009 snR10 snR10 76 93 63.326889 160.490972 111.9089305 2.048864745 -0.013074 32 39 SH2186 2186 Met2 tRNA 61 73 28.802765 110.271778 69.5372715 1.842217646 -0.013084 165 18 SH6506 6506 snR46 snR46 21 39 23.737462 87.586472 55.661967 1.74555855 -0.013099 128 23 SH5189 5189 snR13 snR13 101 121 23.187283 83.537175 53.362229 1.727233962 -0.013102 117 78 SH21208 21208 YOR096W spliced 29.549971 111.700292 70.6251315 1.848959269 -0.013165 149 47 SH8099 8099 snoRNA cluster 3; 5' 26.695401 131.428262 26.695401 105.732861 66.214131 1.820950684 -0.013171 172 42 SH10238 10238 RUF6 1036-1051 + 3' 1036 24.891989 96.191571 60.54178 1.782055186 -0.013245 64 57 SH5489 5489 snR32 snR32 106 122 95.439072 207.571456 151.505264 2.180427723 -0.013302 211 28 SH6302 6302 snR42 snR42 291 308 22.746482 80.40809 51.577286 1.712458486 -0.013316 55 66 SH3091 3091 Ser3 3' flank 29.004796 110.696813 69.8508045 1.844171412 -0.013331 193 89 SH16960 16960 YGR029W_7_543547_544199_INTRON_87_169 3' exon 26.501611 130.279566 26.501611 104.777955 65.639783 1.817167137 -0.013344 109 3 SH11604 11604 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4906 4924 1059.577514 1512.898701 1286.238108 3.109321372 -0.013371 206 47 SH7585 7585 snR189 5' - 19 -4 19 24.378087 92.352483 58.365285 1.766154611 -0.013404 211 17 SH17297 17297 YHR141C_8_382752_381991_INTRON_5_445 intron 23.620746 109.372991 23.620746 86.752245 55.1864955 1.741832816 -0.013462 165 30 SH791 791 Glu1 5' flank 24.775134 95.332162 60.053648 1.778539394 -0.013488 169 12 SH3751 3751 Val4 5' flank 24.340309 92.080869 58.210589 1.765001994 -0.013496 131 83 SH6943 6943 snR58 snR58 76 93 25.36314 99.133539 62.2483395 1.794127771 -0.013498 178 99 SH20468 20468 YGL187C spliced 24.484547 93.154116 58.8193315 1.769520084 -0.013503 202 61 SH13741 13741 MT COB Exon1 24.240987 114.589239 24.240987 91.348252 57.7946195 1.761887409 -0.013523 111 15 SH18175 18175 YLR448W_12_1028848_1029762_INTRON_16_399 intron 25.324076 123.267403 25.324076 98.943327 62.1337015 1.793327227 -0.013534 39 70 SH10484 10484 RUF8 RUF8 346 365 25.414375 99.389773 62.402074 1.795199024 -0.013538 128 102 SH6420 6420 snR45 5' 25.38277 99.23417 62.30847 1.794547087 -0.013545 139 53 SH10010 10010 RUF5-1 3' 26.510557 104.839756 65.6751565 1.817401116 -0.013552 80 5 SH16998 16998 YGR118W_7_726968_727725_INTRON_66_385 intron 691.446509 1726.207959 691.446509 1035.76145 863.6039795 2.936314635 -0.013559 206 24 SH544 544 Cys1 tRNA 21 33 140.122432 272.296087 206.2092595 2.314308163 -0.013577 15 85 SH10287 10287 RUF7 RUF7 46 68 25.917267 101.885353 63.90131 1.805509761 -0.01358 5 31 SH426 426 Asp1 5' flank 25.926247 101.93097 63.9286085 1.805695251 -0.013593 176 85 SH17448 17448 YIL148W_9_68708_69528_INTRON_9_442 intron 23.989057 112.493394 23.989057 89.504337 56.746697 1.753940588 -0.013607 29 3 SH19722 19722 Negative Control 24.975786 96.863591 60.9196885 1.784757674 -0.01361 90 102 SH11870 11870 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6236 6253 437.194705 693.341058 565.2678815 2.75225431 -0.013615 85 27 SH9957 9957 RUF5-1 RUF5-1 591 606 26.116027 102.877791 64.496909 1.809538902 -0.013628 6 29 SH18578 18578 YNL044W_14_545264_545873_INTRON_25_103 intron 26.04994 127.599844 26.04994 102.549904 64.299922 1.808210446 -0.013641 122 30 SH14511 14511 MT 21S rRNA 21S rRNA3 24.653563 118.086147 24.653563 94.432584 59.5430735 1.774831248 -0.013645 205 32 SH13997 13997 MT COB intronic 24.151935 113.855727 24.151935 90.703792 57.4278635 1.759122659 -0.013654 98 11 SH9543 9543 RUF3 RUF3 101 117 30.695581 113.418954 72.0572675 1.857677789 -0.013667 213 41 SH20023 20023 YBR119W spliced 28.82303 110.347189 69.5851095 1.842516315 -0.013668 191 85 SH18323 18323 YML085C_13_99400_97941_INTRON_26_141 intron/exon 26.638403 131.127538 26.638403 105.489135 66.063769 1.819963347 -0.013673 143 7 SH11479 11479 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4281 4296 72.908866 174.523597 123.7162315 2.092426683 -0.013683 154 72 SH1020 1020 Gly2 3' flank 33.120957 116.914333 75.017645 1.875163426 -0.013693 109 11 SH19027 19027 YOR182C_15_678792_678190_INTRON_4_414 intron 21.953066 96.114964 21.953066 75.161898 48.557482 1.686256158 -0.013695 162 18 SH5574 5574 snR33 snR33 156 174 67.447475 166.553098 117.0002865 2.068186925 -0.013706 149 69 SH4523 4523 U3b (snR17b) U3b 171 188 24.735681 95.058257 59.896969 1.777404846 -0.013729 109 14 SH16188 16188 YDR367W_4_1212837_1213603_INTRON_31_131 intron/exon 21.671166 94.009109 21.671166 73.337943 47.5045545 1.67673525 -0.013736 156 78 SH10311 10311 RUF7 RUF7 166 185 25.052158 97.460722 61.25644 1.787151754 -0.013767 159 25 SH20677 20677 YIL106W spliced 24.786675 95.447455 60.117065 1.77899777 -0.013776 98 67 SH18487 18487 YMR194W_13_651144_651909_INTRON_17_479 intron 24.787729 119.244289 24.787729 95.45656 60.1221445 1.779034463 -0.013788 5 35 SH17755 17755 YKL157W_11_154993_158183_INTRON_282_664 intron 26.934174 132.383309 26.934174 106.449135 66.6916545 1.824071492 -0.013793 76 47 SH21854 21854 copy of SH17799 55.444976 149.243274 102.344125 2.010062917 -0.013814 23 101 SH19498 19498 YPT1 24.574199 93.854331 59.214265 1.772426343 -0.013819 141 7 SH13511 13511 MT COX1 intronic 25.841127 126.368441 25.841127 101.527314 63.6842205 1.804031837 -0.013833 116 52 SH10342 10342 RUF7 RUF7 321 340 25.950501 102.071966 64.0112335 1.806256196 -0.013848 34 34 SH20303 20303 YER003C spliced 35.46713 120.268837 77.8679835 1.891358928 -0.01386 152 97 SH13420 13420 MT COX1 intronic 23.129192 105.311684 23.129192 83.182492 53.155842 1.725551002 -0.013875 29 64 SH1153 1153 His1 5' flank - tRNA5 5 22.821427 80.96438 51.8929035 1.715107971 -0.013887 150 66 SH3033 3033 Ser2 3' flank 24.809274 95.633323 60.2212985 1.779750116 -0.013932 65 98 SH14709 14709 MT tRNA thr2 3' 24.855591 119.840311 24.855591 95.98472 60.4201555 1.781181839 -0.013943 158 83 SH9457 9457 RUF2 RUF2 126 143 25.217793 98.450967 61.83438 1.791230011 -0.01395 188 8 SH16576 16576 YER179W_5_548416_549512_INTRON_133_224 intron 24.279824 114.956781 24.279824 91.676957 57.9783905 1.763266155 -0.013965 182 32 SH20710 20710 YJL024C spliced 26.010534 102.382584 64.196559 1.80751175 -0.013999 71 47 SH21408 21408 Ser3 spliced 25.535814 100.030158 62.782986 1.797841967 -0.014044 148 70 SH20235 20235 YDR305C spliced 24.725783 95.015342 59.8705625 1.777213338 -0.014053 143 67 SH11460 11460 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4186 4201 32.629757 116.217477 74.423617 1.871710773 -0.01406 57 74 SH15088 15088 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.370895 107.33603 23.370895 84.965135 54.168015 1.733742921 -0.014084 36 89 SH12540 12540 MT_ORF6 + ORF7 (hypothetical) ORF6/7 24.704862 118.568192 24.704862 94.86333 59.784096 1.776585667 -0.01411 109 39 SH9659 9659 RUF4 RUF4 71 89 23.432966 85.42368 54.428323 1.735824953 -0.014111 211 42 SH6213 6213 snR40 3' 24.470013 93.10435 58.7871815 1.769282639 -0.014116 121 78 SH13531 13531 MT COX1 intronic 22.572792 100.875697 22.572792 79.302905 50.9378485 1.707040597 -0.014118 114 54 SH20140 20140 YDL108W spliced 2143.682819 2836.753284 2490.218052 3.396237377 -0.014145 113 94 SH14874 14874 MT tRNA Ala 5' 24.031343 112.895476 24.031343 89.864133 56.947738 1.755476478 -0.014152 121 54 SH365 365 Asn1 5' flank 25.403709 99.384932 62.3943205 1.795145059 -0.014152 33 16 SH7064 7064 snR62 3' 25.839813 101.546794 63.6933035 1.804093774 -0.014159 62 3 SH13068 13068 MT COX1 intronic / exon3 24.021877 112.817499 24.021877 89.795622 56.9087495 1.755179043 -0.014162 202 21 SH12754 12754 MT COX1 COX1ai1 23.199994 105.928182 23.199994 83.728188 53.464091 1.728062187 -0.014227 208 17 SH7836 7836 snoRNA cluster1 snR74 26.077244 127.813012 26.077244 102.735768 64.406506 1.80892974 -0.014261 38 34 SH2752 2752 Pro5 3' flank 31.536353 114.669501 73.102927 1.863934766 -0.014268 98 32 SH15092 15092 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " orf1 / intronic 26.063248 127.731877 26.063248 102.668629 64.3659385 1.808656106 -0.014293 58 41 SH9026 9026 snR17a / U3a U3a 416 431 38.913976 125.366722 82.140349 1.914556544 -0.014303 134 76 SH9166 9166 snR7 U5 RNA U5 101 115 35.245244 119.984874 77.615059 1.889945992 -0.014315 208 64 SH7809 7809 snoRNA cluster1 intergenic 23.909772 111.898069 23.909772 88.988297 56.4490345 1.751656518 -0.014321 133 97 SH2529 2529 Pro1 3' flank 25.840815 101.56591 63.7033625 1.804162357 -0.014337 24 12 SH921 921 Glu3 3' flank 22.99771 82.271077 52.6343935 1.721269623 -0.014344 85 47 SH6550 6550 snR46 3' 23.536688 86.210089 54.8733885 1.739361779 -0.014348 111 86 SH5583 5583 snR33 3' 22.312742 77.584673 49.9487075 1.698524255 -0.014357 119 96 SH19580 19580 AEP2/ATP13 0.6 23.732344 87.663714 55.698029 1.745839827 -0.014358 120 47 SH7136 7136 snR63 snR63 186 202 1139.3486 1615.577073 1377.462837 3.139079891 -0.014369 154 46 SH7600 7600 snR189 snR189 71 86 27.064299 106.755717 66.910008 1.825491082 -0.014384 134 3 SH18754 18754 YNL162W_14_331319_332151_INTRON_5_516 intron 23.267845 106.504938 23.267845 84.237093 53.752469 1.730398417 -0.014385 161 82 SH7725 7725 snoRNA cluster1 intergenic 24.884528 120.134857 24.884528 96.250329 60.5674285 1.782239135 -0.014413 32 86 SH12590 12590 MT_15S MT_15S 27.782925 135.039826 27.782925 108.256901 68.019913 1.832636072 -0.014446 180 95 SH12505 12505 MT_tRNA Pro 3' 24.574122 117.490043 24.574122 93.915921 59.2450215 1.772651861 -0.014464 201 65 SH18803 18803 YNL301C_14_64561_63569_INTRON_113_544 intron 30.307441 142.201149 30.307441 112.893708 71.6005745 1.854916507 -0.014464 47 20 SH5372 5372 snR31 5' 22.788929 80.789019 51.788974 1.714237307 -0.014469 149 7 SH8399 8399 snoRNA cluster 5 snR190 22.915374 103.604015 22.915374 81.688641 52.3020075 1.718518359 -0.014473 83 44 SH2570 2570 Pro2 tRNA 86 100 29.475558 111.6621 70.568829 1.848612911 -0.014517 46 16 SH1443 1443 Leu2 5' flank - tRNA5 5 25.390909 99.351004 62.3709565 1.794982404 -0.014528 195 36 SH8223 8223 snoRNA cluster 3; snR51 24.212018 114.444231 24.212018 91.232213 57.7221155 1.761342239 -0.014568 206 67 SH6848 6848 snR52 3' 23.349533 84.851734 54.1006335 1.733202351 -0.014572 13 71 SH15280 15280 MT 9S rRNA 9S 25.134581 122.223592 25.134581 98.089011 61.611796 1.789663869 -0.01458 189 99 SH14181 14181 MT COB Exon6 23.780729 110.826955 23.780729 88.046226 55.9134775 1.747516504 -0.01459 117 79 SH20150 20150 YDL115C spliced 456.05674 719.76852 587.91263 2.76931279 -0.014621 92 69 SH5877 5877 snR35 3' 48.784465 139.711727 94.248096 1.974272585 -0.014631 130 88 SH19394 19394 YPR043W_16_654161_654842_INTRON_3_405 3' exon 191.577715 536.692618 191.577715 346.114903 268.846309 2.429504078 -0.014631 198 38 SH21542 21542 copy of SH4152 43.288797 131.75741 87.5231035 1.942122709 -0.014633 191 38 SH19115 19115 YPL031C_16_493033_492014_INTRON_18_119 5' exon 26.347643 129.462747 26.347643 104.115104 65.2313735 1.814456523 -0.014642 131 29 SH10204 10204 RUF6 RUF6 866 890 25.561598 100.205603 62.8836005 1.7985374 -0.014652 10 47 SH4475 4475 U3b (snR17b) 5' 25.612355 100.457765 63.03506 1.799582171 -0.01466 60 54 SH622 622 Gln1 3' flank 282.153795 475.356379 378.755087 2.578358474 -0.014678 99 91 SH7583 7583 snR189 5' - 8 -14 8 27.257728 107.178274 67.218001 1.827485593 -0.014694 10 59 SH15177 15177 MT COX3 5' / cox3 22.546133 100.716764 22.546133 79.170631 50.858382 1.706362539 -0.014702 167 98 SH12269 12269 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.258439 122.968343 25.258439 98.709904 61.9841715 1.792280801 -0.014704 41 54 SH15080 15080 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.818422 119.596867 24.818422 95.778445 60.2984335 1.78030603 -0.014705 206 44 SH14819 14819 "MT tRNAs (Lys, Arg1, Gly)" intergenic 22.298183 98.813761 22.298183 77.515578 49.9068805 1.698160425 -0.01471 25 34 SH19624 19624 RNA14 1.1 23.021613 82.477012 52.7493125 1.722216804 -0.014729 198 45 SH3006 3006 Ser2 5' flank - tRNA9 9 24.377339 92.475199 58.426269 1.766608154 -0.014757 36 24 SH4020 4020 SRP RNA 5' - 8 8 24.988414 97.073952 61.031183 1.785551788 -0.014759 22 100 SH17405 17405 YIL069C_9_232366_231550_INTRON_4_412 intron/exon 22.413517 99.701659 22.413517 78.288142 50.3508295 1.70200663 -0.014767 61 103 SH8896 8896 LSR1 / U2 RNA U2 1121 1138 24.033969 89.940795 56.987382 1.755778706 -0.014775 121 81 SH6105 6105 snR37 3' 24.501686 93.4056 58.953643 1.770510647 -0.014794 55 92 SH13211 13211 MT COX1 COX1-ai4 25.201083 122.636399 25.201083 98.435316 61.8181995 1.791116352 -0.014815 174 104 SH12801 12801 MT COX1 COX1ai1 36.464686 157.23515 36.464686 121.770464 79.117575 1.898272967 -0.014829 181 4 SH15940 15940 YDL115C_4_255042_253994_INTRON_1_88 3' exon 25.06879 121.763287 25.06879 97.694497 61.3816435 1.788038513 -0.014834 22 21 SH2240 2240 Phe1 tRNA 76 90 39.432949 126.153367 82.793158 1.917994448 -0.014839 101 11 SH13111 13111 MT COX1 COX1ai3 26.675446 131.446805 26.675446 105.771359 66.2234025 1.821011491 -0.014839 196 47 SH10110 10110 RUF6 RUF6 396 413 24.250981 91.545607 57.898294 1.762665767 -0.014839 33 68 SH10508 10508 RUF8 RUF8 466 487 23.375098 85.063921 54.2195095 1.734155584 -0.014848 208 8 SH1653 1653 Leu5 3' flank 24.915828 96.532196 60.724012 1.783360457 -0.014862 172 28 SH11885 11885 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6311 6324 45.508818 135.011508 90.260163 1.955496113 -0.014883 70 57 SH2385 2385 Phe4 5' flank 26.934119 106.510731 66.722425 1.824271822 -0.014884 128 49 SH15142 15142 MT tRNA Thr1 reverse complement 5' 22.762938 102.410462 22.762938 80.647524 51.705231 1.713534483 -0.014893 171 3 SH4570 4570 U3b (snR17b) U3b 406 422 25.144634 98.163889 61.6542615 1.7899631 -0.014909 129 41 SH7797 7797 snoRNA cluster1 snR75 30.851387 143.566313 30.851387 113.714926 72.2831565 1.859037109 -0.014921 77 62 SH20507 20507 YGR027C spliced 25.2496 98.692773 61.9711865 1.792189811 -0.015046 52 64 SH2321 2321 Phe3 5' flank 28.558079 109.887803 69.222941 1.840250047 -0.015057 25 93 SH17015 17015 YGR148C_7_788173_787307_INTRON_1_392 intron 26.790616 132.010128 26.790616 106.219512 66.505064 1.822854716 -0.015076 181 32 SH10745 10745 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 611 626 28.034308 108.813117 68.4237125 1.835206634 -0.01508 97 5 SH15658 15658 YBR189W_2_604466_605466_INTRON_8_420 intron 45.496271 179.504485 45.496271 135.008214 90.2522425 1.955458002 -0.015098 166 65 SH4937 4937 snR9 snR9 91 108 42.523934 130.693786 86.60886 1.937562322 -0.015113 81 79 SH16356 16356 YDR500C_4_1450856_1450201_INTRON_8_396 intron 37.19574 159.084546 37.19574 122.888806 80.042273 1.903319413 -0.015175 177 53 SH2762 2762 Pro6 5' flank 24.757053 95.363317 60.060185 1.778586666 -0.015202 151 26 SH8717 8717 LSR1 / U2 RNA U2 226 243 23.976355 89.559242 56.7677985 1.754102052 -0.015217 204 11 SH12279 12279 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.994647 127.399911 25.994647 102.405264 64.1999555 1.807534727 -0.015265 144 93 SH7070 7070 snR62 3' 25.671508 100.800143 63.2358255 1.800963192 -0.01528 177 96 SH1523 1523 Leu3 tRNA 86 102 50.888768 142.817553 96.8531605 1.986113797 -0.01535 132 55 SH13874 13874 MT COB intronic 23.490584 108.451949 23.490584 85.961365 54.7259745 1.738193504 -0.01537 182 33 SH16259 16259 YDR424C_4_1319830_1319376_INTRON_26_121 exon/intron 26.052416 127.754333 26.052416 102.701917 64.3771665 1.808731858 -0.015376 169 33 SH2918 2918 Pro8 3' flank 22.819912 81.080905 51.9504085 1.715588967 -0.01539 39 62 SH21507 21507 copy of SH2799 29.868021 112.295825 71.081923 1.851759168 -0.015415 147 104 SH19952 19952 YBL050W spliced 4063.231606 4975.703918 4519.467762 3.655087293 -0.015483 84 27 SH6291 6291 snR42 snR42 236 252 86.778104 195.058578 140.918341 2.148967522 -0.015484 25 99 SH5194 5194 snR13 3' 26.54539 105.173734 65.859562 1.818618838 -0.015491 175 95 SH15214 15214 MT COX3 cox3 21.962187 96.321663 21.962187 75.359476 48.6608315 1.687179526 -0.01551 156 63 SH3024 3024 Ser2 81-82 + 3' flank 81 22.681144 80.144572 51.412858 1.711071747 -0.015512 153 6 SH13275 13275 MT COX1 Exon 5a 25.05116 121.681283 25.05116 97.630123 61.3406415 1.787748314 -0.015536 115 46 SH12848 12848 MT COX1 COX1ai1 27.832054 135.254588 27.832054 108.422534 68.127294 1.833321139 -0.015557 119 8 SH406 406 Asn1 3' flank 26.806079 106.279731 66.542905 1.823101757 -0.015566 162 44 SH3782 3782 Val4 3' flank 24.412397 92.814851 58.613624 1.767998574 -0.015585 4 52 SH9805 9805 RUF4 3' 30.305044 112.954546 71.629795 1.855093708 -0.015643 31 18 SH16411 16411 YER056C-A_5_270183_269421_INTRON_38_434 intron 27.560678 134.427168 27.560678 107.86649 67.713584 1.830675801 -0.015683 152 27 SH17649 17649 YJR145C_10_702761_701720_INTRON_15_270 intron 29.337677 139.854381 29.337677 111.516704 70.4271905 1.847740364 -0.015805 40 100 SH17019 17019 YGR148C_7_788173_787307_INTRON_1_392 intron 25.270347 123.125674 25.270347 98.855327 62.062837 1.792831624 -0.015821 16 16 SH18330 18330 YML094W_13_82275_82849_INTRON_17_99 intron 23.408858 107.808252 23.408858 85.399394 54.404126 1.735631838 -0.015825 181 80 SH14305 14305 MT VAR1 includes 5’ processing site VAR1 25.781569 126.171568 25.781569 101.389999 63.585784 1.80336003 -0.015825 132 40 SH6682 6682 snR49 5' 25.307227 99.040157 62.173692 1.793606657 -0.015852 32 42 SH10428 10428 RUF8 RUF8 66 85 24.44923 93.116442 58.782836 1.769250535 -0.015866 145 87 SH2831 2831 Pro7 5' flank 24.549711 93.869478 59.2095945 1.772392087 -0.015881 75 10 SH4859 4859 snR8 snR8 76 90 158.798622 299.416043 229.1073325 2.360038989 -0.015886 171 19 SH3600 3600 Val1 5' flank - tRNA12 12 95.810964 208.431667 152.1213155 2.182190072 -0.015891 197 85 SH16484 16484 YER102W_5_362729_363698_INTRON_1_360 intron 24.349082 115.723961 24.349082 92.374879 58.3619805 1.766130021 -0.015915 81 61 SH21566 21566 copy of SH5226 28.132744 109.068847 68.6007955 1.836329152 -0.015992 148 75 SH14755 14755 MT ORF11; tRNA Leu; tRNA Gln ORF11 22.956351 104.072905 22.956351 82.116554 52.5364525 1.720460744 -0.01602 139 38 SH4344 4344 telomerase RNA telomerase 756 777 24.213555 91.379664 57.7966095 1.761902362 -0.016021 117 3 SH15261 15261 MT 9S rRNA 5' / 9S 23.255802 106.550774 23.255802 84.294972 53.775387 1.730583545 -0.01604 46 9 SH19650 19650 SIR1 2.2 24.760655 95.476549 60.118602 1.779008873 -0.01608 55 48 SH18285 18285 YML067C_13_140214_139063_INTRON_32_124 intron 21.890838 95.826917 21.890838 74.936079 48.4134585 1.684966108 -0.01609 56 24 SH16205 16205 YDR381W_4_1236547_1237993_INTRON_286_1051 5' exon 28.36291 136.911091 28.36291 109.548181 68.9555455 1.838569198 -0.016093 71 46 SH4357 4357 telomerase RNA telomerase 821 840 23.548963 86.459082 55.0040225 1.740394451 -0.016099 154 48 SH21759 21759 copy of SH13391 24.811637 95.864925 60.338281 1.780592933 -0.016107 195 55 SH957 957 Gly1 tRNA 36 48 45.9685 135.765637 90.8670685 1.958406517 -0.016124 32 84 SH2285 2285 Phe2 tRNA 21 33 30.121166 112.709673 71.4154195 1.853791992 -0.016127 56 92 SH13525 13525 MT COX1 intronic 25.113129 122.21543 25.113129 98.102301 61.607715 1.789635101 -0.016128 69 36 SH618 618 Gln1 3' flank 42.206812 130.3056 86.256206 1.935790352 -0.016157 21 62 SH17283 17283 YHR141C_8_382752_381991_INTRON_5_445 intron 30.231559 142.106891 30.231559 112.875332 71.5534455 1.854630551 -0.016176 176 44 SH16678 16678 YGL030W_7_439087_439634_INTRON_4_233 5' exon 25.025573 121.524579 25.025573 97.499006 61.2622895 1.787193223 -0.016178 141 90 SH4211 4211 telomerase RNA telomerase 91 110 21.316956 71.285268 46.301112 1.665591421 -0.01618 67 10 SH11306 11306 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3416 3429 39.764675 126.720118 83.2423965 1.920344575 -0.016187 138 48 SH17411 17411 YIL106W_9_166412_167441_INTRON_21_105 intron 22.150556 97.804408 22.150556 76.653852 49.402204 1.693746325 -0.016212 123 91 SH8700 8700 LSR1 / U2 RNA U2 141 158 29.864281 112.334695 71.099488 1.851866473 -0.016233 154 103 SH14549 14549 MT 21S rRNA 21S rRNA3 24.998613 121.29727 24.998613 97.298657 61.148635 1.786386767 -0.016233 96 50 SH5119 5119 snR11 snR11 196 210 32.273253 115.830741 74.051997 1.869536775 -0.016235 213 95 SH17403 17403 YIL069C_9_232366_231550_INTRON_4_412 intron 24.519771 117.199362 24.519771 93.679591 59.099681 1.771585137 -0.016239 191 69 SH2975 2975 Ser1 3' flank 23.890169 89.019879 56.455024 1.751702596 -0.016243 162 82 SH979 979 Gly1 3' flank 26.892219 106.500004 66.6961115 1.824100515 -0.016254 64 63 SH18824 18824 YNL302C_14_62942_61957_INTRON_21_571 intron 23.892877 111.934637 23.892877 89.04176 56.4673185 1.751797165 -0.016259 172 48 SH5857 5857 snR35 snR35 471 488 24.674717 94.846343 59.76053 1.77641444 -0.016268 60 52 SH5639 5639 snR34 snR34 116 132 33.592579 117.749339 75.670959 1.878929238 -0.016328 79 104 SH15922 15922 YDL083C_4_307788_306925_INTRON_25_456 3' exon 25.00878 121.396542 25.00878 97.387762 61.198271 1.786739152 -0.016348 155 102 SH18672 18672 YNL112W_14_413636_416278_INTRON_1274_2275 intron 24.929867 120.716362 24.929867 96.786495 60.858181 1.784318968 -0.01635 47 93 SH9620 9620 RUF3 3' 28.022647 108.863225 68.442936 1.835328631 -0.016364 122 57 SH5787 5787 snR35 snR35 121 140 25.302534 99.056766 62.17965 1.793648273 -0.016365 59 17 SH12764 12764 MT COX1 COX1ai1 24.551028 117.480329 24.551028 93.929301 59.2401645 1.772616256 -0.0164 38 33 SH3965 3965 RNase MRP RNaseMRP 241 259 25.263688 98.869129 62.0664085 1.792856615 -0.016423 26 83 SH10105 10105 RUF6 RUF6 371 388 25.32806 99.187756 62.257908 1.794194523 -0.016425 4 15 SH18000 18000 YLR287C-A_12_713158_712537_INTRON_4_433 intron 25.179464 122.634468 25.179464 98.455004 61.817234 1.791109569 -0.016453 66 56 SH2191 2191 Met2 3' flank 24.838284 96.102776 60.47053 1.781543775 -0.016472 152 64 SH3783 3783 Val4 3' flank 24.872142 96.35984 60.615991 1.78258721 -0.016473 169 63 SH714 714 Gln3 3' flank 22.145147 76.638376 49.3917615 1.693654515 -0.016475 37 6 SH12132 12132 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7546 7559 24.629754 94.528539 59.5791465 1.775094277 -0.016481 37 95 SH2707 2707 Pro5 5' flank 40.143656 127.304913 83.7242845 1.922851445 -0.016504 193 41 SH15421 15421 YBL059W_2_110555_111205_INTRON_287_355 3' exon 46.191452 181.306777 46.191452 136.115325 91.1533885 1.959772818 -0.01651 3 40 SH21218 21218 YOR122C spliced 32.871232 116.714645 74.7929385 1.873860596 -0.016573 7 59 SH1991 1991 Lys3 5' flank 24.717407 95.200617 59.959012 1.777854468 -0.016599 171 61 SH9911 9911 RUF5-1 RUF5-1 361 378 24.20971 91.405589 57.8076495 1.761985311 -0.016601 5 73 SH17420 17420 YIL111W_9_155219_155762_INTRON_2_89 intron 25.049117 121.779149 25.049117 97.730032 61.3895745 1.788094623 -0.016689 137 77 SH4338 4338 telomerase RNA telomerase 726 745 22.101378 76.366066 49.233722 1.692262669 -0.016694 145 80 SH4525 4525 U3b (snR17b) U3b 181 197 38.796219 125.346729 82.071474 1.914192233 -0.016707 181 7 SH9783 9783 RUF4 RUF4 691 713 23.810039 88.463265 56.136652 1.749246508 -0.01673 167 64 SH2473 2473 Phe5 3' flank 26.23735 103.742633 64.9899915 1.81284648 -0.016832 66 20 SH21831 21831 copy of SH16331 26.505533 105.085526 65.7955295 1.818196386 -0.016842 60 97 SH6295 6295 snR42 snR42 256 275 24.449834 93.214451 58.8321425 1.769614664 -0.016845 122 6 SH8409 8409 snoRNA cluster 5 snR190 22.939298 104.003681 22.939298 82.064383 52.5018405 1.720174528 -0.016846 54 48 SH12592 12592 MT_15S MT_15S 22.050704 97.094674 22.050704 76.04397 49.047337 1.690615433 -0.016853 97 72 SH1001 1001 Gly2 5' flank - tRNA10 10 59.258265 154.954366 107.1063155 2.02981508 -0.016859 179 5 SH557 557 Cys1 3' flank 24.838514 96.145514 60.492014 1.781698044 -0.016888 22 9 SH17569 17569 YJL189W_10_75932_76473_INTRON_7_392 intron 23.459623 108.329424 23.459623 85.869801 54.664712 1.737707064 -0.016896 36 2 SH9281 9281 RUF1 5' 24.639089 94.640045 59.639567 1.775534482 -0.016907 19 47 SH14488 14488 MT 21S rRNA 21S rRNA3 23.234158 106.448438 23.234158 84.21428 53.724219 1.730170111 -0.016921 119 9 SH6520 6520 snR46 snR46 91 108 126.263017 252.935998 189.5995075 2.277837205 -0.016922 81 18 SH13266 13266 MT COX1 COX1-ai4 25.970218 127.387828 25.970218 102.41761 64.193914 1.807493856 -0.016933 176 89 SH18751 18751 YNL162W_14_331319_332151_INTRON_5_516 intron 24.140142 114.063357 24.140142 90.923215 57.5316785 1.759907045 -0.016942 125 55 SH3501 3501 Tyr1 tRNA-intron/exon 46 63 32.987899 116.906895 74.947397 1.874756554 -0.016952 82 28 SH2286 2286 Phe2 tRNA-exon/intron 26 42 46.037332 135.923955 90.9806435 1.958949004 -0.016959 96 10 SH19492 19492 YPT1 26.489955 105.018308 65.7541315 1.817923046 -0.016973 100 75 SH14633 14633 MT 21S rRNA Sce1 endonuc 22.434045 100.034529 22.434045 78.600484 50.5172645 1.703439826 -0.016979 51 17 SH11982 11982 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6796 6813 100.201736 215.04424 157.622988 2.197619556 -0.016992 45 37 SH17009 17009 YGR148C_7_788173_787307_INTRON_1_392 intron 31.417178 145.066392 31.417178 114.649214 73.033196 1.863520306 -0.016996 74 75 SH15900 15900 YDL083C_4_307788_306925_INTRON_25_456 intron 35.228828 154.34898 35.228828 120.120152 77.67449 1.89027841 -0.01701 140 20 SH14314 14314 MT VAR1 includes 5’ processing site VAR1 24.925194 120.742536 24.925194 96.817342 60.871268 1.784412349 -0.017019 19 49 SH16655 16655 YFR031C-A_6_221405_220494_INTRON_5_151 3' exon 83.332511 272.457408 83.332511 190.124897 136.728704 2.135859697 -0.017062 182 35 SH19407 19407 YPR098C_16_729525_728944_INTRON_48_143 exon/intron 23.888361 111.972883 23.888361 89.084522 56.4864415 1.751944216 -0.017083 102 50 SH17593 17593 YJL191W_10_73786_74610_INTRON_11_418 intron 24.258538 115.072914 24.258538 91.814376 58.036457 1.763700892 -0.017101 190 85 SH5836 5836 snR35 snR35 366 382 24.630328 94.592968 59.611648 1.775331128 -0.017101 67 31 SH74 74 Ala2 6-12 6 18 28.087284 109.041248 68.564266 1.836097831 -0.017135 197 46 SH10720 10720 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 486 504 26.540457 105.288 65.9142285 1.818979173 -0.017174 174 34 SH15739 15739 YCR028C-A_3_173432_172942_INTRON_243_325 exon/intron 84.579366 275.574972 84.579366 191.995606 138.287486 2.140782881 -0.017182 99 104 SH13439 13439 MT COX1 intronic 23.280566 106.858118 23.280566 84.577552 53.929059 1.731822842 -0.017186 7 78 SH1022 1022 Gly2 3' flank 23.251156 84.362617 53.8068865 1.730837863 -0.017192 4 40 SH18012 18012 YLR287C-A_12_713158_712537_INTRON_4_433 intron 23.968452 112.652592 23.968452 89.68414 56.826296 1.754549349 -0.017205 191 24 SH19389 19389 YPR043W_16_654161_654842_INTRON_3_405 intron 27.107504 133.116012 27.107504 107.008508 67.058006 1.826450635 -0.017242 131 92 SH12362 12362 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.915663 135.60884 27.915663 108.693177 68.30442 1.834448808 -0.01725 164 62 SH18468 18468 YMR143W_13_551927_552902_INTRON_25_568 intron 24.416442 116.421473 24.416442 93.005031 58.7107365 1.768717528 -0.017264 158 26 SH14004 14004 MT COB intronic 22.842156 103.244655 22.842156 81.402499 52.1223275 1.717023801 -0.017294 117 2 SH14538 14538 MT 21S rRNA 21S rRNA3 23.281836 106.881004 23.281836 84.599168 53.940502 1.731914984 -0.017325 95 66 SH7072 7072 snR62 3' 29.068309 111.061211 70.06476 1.845499639 -0.017332 8 26 SH4983 4983 snR10 5' 23.872067 88.992482 56.4322745 1.751527555 -0.017411 11 74 SH18937 18937 YOL121C_15_92849_92025_INTRON_21_410 intron 23.15585 105.841166 23.15585 83.685316 53.420583 1.727708623 -0.017413 22 37 SH14876 14876 MT tRNA Ala 5' 23.20007 106.211306 23.20007 84.011236 53.605653 1.729210591 -0.017447 131 48 SH12080 12080 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7286 7304 23.38623 85.380662 54.383446 1.735466723 -0.017481 175 93 SH13523 13523 MT COX1 intronic 24.013386 113.054672 24.013386 90.041286 57.027336 1.756083084 -0.0175 27 75 SH13898 13898 MT COB intronic 23.134393 105.67325 23.134393 83.538857 53.336625 1.727025531 -0.017527 133 54 SH3177 3177 Ser5 tRNA 6 18 2052.438586 2736.070232 2394.254409 3.379170296 -0.017527 146 49 SH21440 21440 TH302 - control oligo; WTP_222 30.503148 113.349249 71.9261985 1.856887107 -0.017534 18 85 SH19674 19674 SIR1 2.4 28.164029 109.223304 68.6936665 1.836916697 -0.017545 211 81 SH11134 11134 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2556 2571 42.4605 130.764153 86.6123265 1.937579704 -0.017545 59 9 SH5814 5814 snR35 snR35 256 272 23.35417 85.151998 54.253084 1.734424431 -0.017565 173 75 SH13094 13094 MT COX1 COX1ai3 31.046773 144.193564 31.046773 114.146791 72.596782 1.86091737 -0.017602 27 64 SH16062 16062 YDL219W_4_65243_65766_INTRON_66_136 intron/exon 24.684414 118.734643 24.684414 95.050229 59.8673215 1.777189828 -0.017611 131 23 SH15555 15555 YBR082C_2_407127_406586_INTRON_48_142 exon/intron 25.718971 125.942445 25.718971 101.223474 63.4712225 1.802576863 -0.017646 139 19 SH9159 9159 snR7 U5 RNA U5 66 85 26.877369 106.547635 66.712502 1.824207229 -0.017649 12 53 SH12704 12704 MT ORF 8 (hypothetical) ORF8 23.065452 105.113289 23.065452 83.047837 53.0566445 1.72473978 -0.017651 39 52 SH20373 20373 YER179W spliced 26.530588 105.28031 65.905449 1.818921323 -0.01768 113 45 SH7287 7287 snR66 5' 26.541865 105.341188 65.9415265 1.819158997 -0.017732 188 92 SH16907 16907 YGL232W_7_62074_63001_INTRON_58_115 intron 26.569181 131.047772 26.569181 105.478591 66.023886 1.819701082 -0.017737 35 57 SH13119 13119 MT COX1 COX1ai3 22.864894 103.471719 22.864894 81.606825 52.2358595 1.717968745 -0.01777 135 82 SH9759 9759 RUF4 RUF4 571 585 522.234677 811.754238 666.9944575 2.824122225 -0.01778 108 66 SH9922 9922 RUF5-1 RUF5-1 416 433 26.433499 104.8023 65.6178995 1.817022324 -0.017786 178 94 SH786 786 Glu1 5' flank 24.398258 92.919146 58.658702 1.768332449 -0.017787 128 48 SH19986 19986 YBL092W spliced 40.054519 127.255949 83.655234 1.922493118 -0.017794 77 54 SH4582 4582 U3b (snR17b) 3' 23.744317 88.069888 55.9071025 1.747466985 -0.017803 119 95 SH18185 18185 YML024W_13_225889_226697_INTRON_4_401 5' exon 23.738341 110.764069 23.738341 88.025728 55.8820345 1.747272209 -0.017809 32 56 SH17551 17551 YJL189W_10_75932_76473_INTRON_7_392 5' exon 68.696308 236.433024 68.696308 168.736716 118.716512 2.074511128 -0.017863 98 52 SH2368 2368 Phe3 3' flank 34.185569 118.691861 76.438715 1.883313378 -0.017883 108 43 SH4982 4982 snR10 5' 21.876226 74.976611 48.4264185 1.685082351 -0.017891 118 27 SH9724 9724 RUF4 RUF4 396 408 26.285434 104.070553 65.1779935 1.814100987 -0.017904 155 75 SH17924 17924 YLR078C_12_286560_285737_INTRON_4_92 intron 29.099512 139.259277 29.099512 111.159765 70.1296385 1.8459016 -0.017929 19 56 SH10469 10469 RUF8 RUF8 271 292 341.392187 561.106508 451.2493475 2.654416587 -0.017938 14 6 SH17322 17322 YIL004C_9_348502_347943_INTRON_12_142 intron 25.241704 123.120164 25.241704 98.87846 62.060082 1.792812345 -0.017946 199 22 SH15218 15218 MT COX3 cox3 23.654101 110.064735 23.654101 87.410634 55.5323675 1.744546189 -0.017966 154 20 SH20223 20223 YDR092W spliced 26.288416 104.090606 65.189511 1.814177723 -0.017967 174 5 SH12859 12859 MT COX1 COX1ai1 23.242677 106.612519 23.242677 84.369842 53.8062595 1.730832802 -0.017978 209 80 SH3270 3270 Thr2 5' flank 26.164879 103.477177 64.821028 1.811715914 -0.018022 6 70 SH18079 18079 YLR344W_12_819312_820142_INTRON_20_466 intron 22.453441 100.267899 22.453441 78.814458 50.6339495 1.704441804 -0.018037 84 38 SH4140 4140 SRP RNA SRP RNA 591 607 27.939187 108.78831 68.3637485 1.834825868 -0.018054 162 46 SH396 396 Asn1 61-73 61 73 246.030004 424.565838 335.297921 2.525430861 -0.018063 154 91 SH16785 16785 YGL103W_7_310965_311925_INTRON_50_560 intron 25.63799 125.492313 25.63799 100.854323 63.2461565 1.801034138 -0.01807 158 85 SH9976 9976 RUF5-1 RUF5-1 686 703 26.378145 104.549241 65.463693 1.816000501 -0.018082 171 73 SH4522 4522 U3b (snR17b) U3b 166 181 24.06252 90.457045 57.2597825 1.757849694 -0.018085 55 37 SH269 269 Arg4 5' flank 23.747848 88.122558 55.935203 1.747685219 -0.018088 32 94 SH2729 2729 Pro5 tRNA-exon/intron 26 38 24.757359 95.648705 60.203032 1.779618364 -0.018091 16 89 SH11666 11666 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5216 5229 37.536457 123.577783 80.55712 1.906103931 -0.018099 169 9 SH3412 3412 Thr4 3' flank 26.655632 105.945136 66.300384 1.821516044 -0.018129 52 98 SH3084 3084 Ser3 3' flank 26.436807 104.847161 65.641984 1.817181699 -0.01813 197 20 SH1369 1369 Leu1 5' flank 28.046948 109.017799 68.5323735 1.835895773 -0.018169 121 28 SH21629 21629 copy of SH7929 26.389301 104.612507 65.500904 1.816247294 -0.018171 78 59 SH14742 14742 MT ORF11; tRNA Leu; tRNA Gln 5' 25.840759 126.713029 25.840759 101.87227 63.8565145 1.80520521 -0.018179 130 57 SH16972 16972 YGR034W_7_555923_556666_INTRON_20_496 intron 28.711801 138.097225 28.711801 110.385424 69.5486125 1.84228847 -0.018192 192 19 SH16914 16914 YGL251C_7_31636_27921_INTRON_59_210 exon/intron 27.983301 135.871658 27.983301 108.888357 68.435829 1.835283532 -0.018206 29 99 SH13374 13374 MT COX1 intronic 24.466876 116.93925 24.466876 93.472374 58.969625 1.770628366 -0.018207 73 32 SH9906 9906 RUF5-1 RUF5-1 336 355 23.376956 85.379732 54.378344 1.735425978 -0.018236 94 94 SH7741 7741 snoRNA cluster1 intergenic 24.016358 113.150081 24.016358 90.133723 57.0750405 1.756446228 -0.018264 44 27 SH1703 1703 Leu6 81-84 + 3' flank 81 23.406449 85.600906 54.5036775 1.736425806 -0.018277 38 100 SH1292 1292 Ile2 3' flank 23.766922 88.284229 56.0255755 1.748386326 -0.018291 178 60 SH13981 13981 MT COB intronic 24.273834 115.316408 24.273834 92.042574 58.158204 1.764610986 -0.018316 192 92 SH13670 13670 MT ATP6 ATP6 26.207374 128.923717 26.207374 103.716343 64.9618585 1.812658441 -0.01835 28 37 SH16897 16897 YGL226C-A_7_73156_72747_INTRON_22_170 intron 39.870994 165.890066 39.870994 127.019072 83.445033 1.921400491 -0.01836 49 45 SH2464 2464 Phe5 91 + 3' flank 91 22.636406 80.072487 51.3544465 1.710578053 -0.01836 99 51 SH1513 1513 Leu3 tRNA-exon/intron 36 52 28.246057 109.439803 68.84293 1.837859346 -0.018363 174 43 SH1007 1007 Gly2 tRNA 26 42 31.246082 114.478042 72.862062 1.862501458 -0.018367 144 89 SH8869 8869 LSR1 / U2 RNA U2 986 1002 28.106247 109.152524 68.6293855 1.83651011 -0.01838 196 37 SH6128 6128 snR39B 5' 28.656884 110.284945 69.4709145 1.841803016 -0.018394 76 12 SH7283 7283 snR66 5' 26.41611 104.766543 65.5913265 1.816846414 -0.018411 196 79 SH2231 2231 Phe1 tRNA-exon/intron 31 49 27.506889 107.911496 67.7091925 1.830647634 -0.018425 34 26 SH12718 12718 MT ORF 8 (hypothetical) 3' 22.774643 102.790214 22.774643 81.015571 51.895107 1.715126412 -0.018433 214 44 SH7636 7636 snR189 3' 24.537835 94.026736 59.2822855 1.772924939 -0.018437 178 13 SH4399 4399 telomerase RNA telomerase 1031 1048 25.094769 98.190153 61.642461 1.789879969 -0.018447 43 80 SH12628 12628 MT_15S MT_15S 23.270436 106.886394 23.270436 84.615958 53.943197 1.731936682 -0.018459 74 31 SH19238 19238 YPL090C_16_378390_377286_INTRON_7_400 intron 23.520655 108.985095 23.520655 86.46444 54.9925475 1.740303839 -0.018479 109 44 SH2890 2890 Pro8 5' flank 23.733305 88.051567 55.892436 1.747353038 -0.018499 183 59 SH5347 5347 snR30 586-601+3' 586 30.460874 113.340616 71.900745 1.85673339 -0.01851 111 94 SH17199 17199 YHR021C_8_148660_147862_INTRON_4_553 intron 22.567918 101.190677 22.567918 79.622759 51.0953385 1.708381281 -0.018517 26 69 SH19846 19846 Negative Control 37.600209 123.698634 80.6494215 1.906601257 -0.018518 200 78 SH18279 18279 YML056C_13_164176_162194_INTRON_461_868 3' exon 27.552082 134.563339 27.552082 108.011257 67.7816695 1.831112262 -0.018522 185 27 SH4100 4100 SRP RNA SRP RNA 391 405 23.840366 88.858667 56.3495165 1.750890194 -0.018537 93 46 SH5765 5765 snR35 snR35 11 28 29.936973 112.56901 71.2529915 1.852803103 -0.018556 144 62 SH13287 13287 MT COX1 Exon 5a 24.848526 120.23668 24.848526 96.388154 60.61834 1.782604039 -0.018574 34 74 SH17316 17316 YHR203C_8_505526_504472_INTRON_15_283 intron/exon 23.428035 108.21587 23.428035 85.787835 54.607935 1.737255754 -0.018583 56 52 SH10114 10114 RUF6 RUF6 416 438 192.288645 347.987354 270.1379995 2.431585679 -0.018588 70 76 SH17229 17229 YHR077C_8_255757_252375_INTRON_7_119 intron 24.172589 114.490492 24.172589 91.317903 57.745246 1.761516236 -0.018598 88 41 SH7790 7790 snoRNA cluster1 snR75 47.848454 185.486798 47.848454 138.638344 93.243399 1.969618096 -0.018602 105 83 SH6434 6434 snR45 snR45 16 37 69.734481 170.30199 120.0182355 2.079247238 -0.018616 58 13 SH2172 2172 Met2 5' flank - tRNA6 6 26.221015 103.807528 65.0142715 1.813008701 -0.018632 17 77 SH841 841 Glu2 5' flank 26.702405 106.22244 66.4624225 1.822576167 -0.018636 89 92 SH5613 5613 snR34 5' - 3 -14 3 24.048523 90.405045 57.226784 1.75759934 -0.018636 36 82 SH5283 5283 snR30 snR30 266 282 23.406001 85.630121 54.518061 1.736540401 -0.01864 181 61 SH13113 13113 MT COX1 COX1ai3 22.121915 97.775405 22.121915 76.65349 49.3877025 1.693618823 -0.018658 54 35 SH3956 3956 RNase MRP RNaseMRP 196 211 32.026439 115.615831 73.821135 1.868180718 -0.018667 98 103 SH4113 4113 SRP RNA SRP RNA 456 468 25.247875 98.966556 62.1072155 1.793142059 -0.018687 105 81 SH16168 16168 YDR139C_4_733917_733611_INTRON_150_222 intron 21.981206 96.708469 21.981206 75.727263 48.8542345 1.688902213 -0.018696 76 91 SH18467 18467 YMR143W_13_551927_552902_INTRON_25_568 intron 32.117313 146.864566 32.117313 115.747253 73.932283 1.868834117 -0.018701 42 84 SH11189 11189 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2831 2849 24.178319 91.370834 57.7745765 1.761736771 -0.018709 184 92 SH19652 19652 SIR1 2.2 24.583203 94.400888 59.4920455 1.774458901 -0.018779 95 91 SH20099 20099 YDL029W spliced 25.975335 102.592344 64.2838395 1.808101808 -0.018788 104 43 SH21611 21611 copy of SH7092 24.161846 91.259383 57.7106145 1.761255699 -0.018822 167 75 SH16132 16132 YDR064W_4_579453_580447_INTRON_22_560 intron 26.417538 130.227186 26.417538 104.809648 65.613593 1.81699382 -0.018848 95 103 SH16956 16956 YGR029W_7_543547_544199_INTRON_87_169 intron 23.777721 111.194753 23.777721 88.417032 56.0973765 1.748942551 -0.018851 14 57 SH12526 12526 MT_ORF6 + ORF7 (hypothetical) ORF6/7 22.566923 101.213783 22.566923 79.64686 51.1068915 1.708479466 -0.018901 165 73 SH6678 6678 snR49 5' 24.310565 92.373561 58.342063 1.765981782 -0.018926 32 10 SH15566 15566 YBR084C-A_2_415219_414144_INTRON_3_508 intron 26.311191 129.595397 26.311191 104.284206 65.2976985 1.814897874 -0.018941 74 98 SH9762 9762 RUF4 RUF4 586 608 29.842719 112.449898 71.1463085 1.852152371 -0.018943 148 76 SH180 180 Arg2 16-28 16 28 56.897186 151.724652 104.310919 2.018329772 -0.018946 92 93 SH13127 13127 MT COX1 COX1ai3 22.254943 98.814848 22.254943 77.559905 49.907424 1.698165154 -0.018953 155 12 SH12071 12071 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7241 7259 24.825963 96.254914 60.5404385 1.782045562 -0.018962 36 35 SH11550 11550 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4636 4653 29.186884 111.399754 70.293319 1.84691405 -0.018989 79 19 SH19948 19948 YBL050W spliced 31.973392 115.560191 73.7667915 1.867860894 -0.019026 130 104 SH21927 21927 copy of SH20402 34.699907 119.492913 77.09641 1.887034156 -0.019051 113 67 SH14101 14101 MT COB Cytbi4 21.805769 95.412185 21.805769 74.606416 48.2060925 1.68310193 -0.019095 25 104 SH19141 19141 YPL075W_16_412249_415357_INTRON_9_759 intron 25.715677 126.040031 25.715677 101.324354 63.5200155 1.802910595 -0.019122 55 8 SH14923 14923 MT tRNA Tyr 3' 23.336943 107.501904 23.336943 85.164961 54.250952 1.734407364 -0.019134 121 24 SH16339 16339 YDR500C_4_1450856_1450201_INTRON_8_396 intron 186.892627 526.269132 186.892627 340.376505 263.634566 2.421002351 -0.019148 125 79 SH20632 20632 YHR123W spliced 45.338045 135.060139 90.199092 1.955202166 -0.01915 23 52 SH16638 16638 YFR024C-A_6_203420_201947_INTRON_48_165 intron 22.630972 101.731702 22.630972 80.10073 51.365851 1.710674488 -0.019164 43 56 SH13687 13687 MT ORF 5 (hypothetical) ORF5 34.639704 153.053772 34.639704 119.414068 77.026886 1.886642341 -0.019165 201 58 SH12435 12435 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.293301 115.561279 24.293301 92.267978 58.2806395 1.765524309 -0.019169 54 92 SH14198 14198 MT COB Exon6 25.304861 123.592077 25.304861 99.287216 62.2960385 1.79446043 -0.019178 41 4 SH12740 12740 MT COX1 COX1ai1 25.138434 122.601641 25.138434 98.463207 61.8008205 1.790994241 -0.019186 106 32 SH4425 4425 telomerase RNA telomerase 1161 1182 21.323837 71.547885 46.435861 1.666853503 -0.01927 174 46 SH1972 1972 Lys2 tRNA 61 73 64.54331 162.813446 113.678378 2.055677868 -0.019272 90 101 SH9822 9822 RUF5-1 5' 23.762594 88.344207 56.0534005 1.748601964 -0.019291 119 13 SH9629 9629 RUF4 5' 28.589572 110.200034 69.394803 1.841326947 -0.019298 109 53 SH15407 15407 YBL059C-A_2_110500_110086_INTRON_35_119 exon/intron 23.468123 108.618977 23.468123 86.150854 54.8094885 1.738855749 -0.01932 106 94 SH11449 11449 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4131 4148 54.193448 147.875418 101.034433 2.004469409 -0.019362 209 64 SH14123 14123 MT COB intronic 23.931951 112.546983 23.931951 89.615032 56.7734915 1.754145604 -0.019365 14 81 SH5268 5268 snR30 snR30 191 207 36.636852 122.309016 79.472934 1.900219247 -0.01937 211 74 SH4334 4334 telomerase RNA telomerase 706 725 24.075902 90.68035 57.378126 1.75874636 -0.019426 199 97 SH13253 13253 MT COX1 COX1-ai4 23.162605 106.074229 23.162605 83.911624 53.5371145 1.72865496 -0.019431 149 98 SH17173 17173 YHR021C_8_148660_147862_INTRON_4_553 exon/intron 24.796441 119.873811 24.796441 96.07737 60.4369055 1.781302219 -0.019436 18 101 SH600 600 Gln1 tRNA 41 55 37.211307 123.176556 80.1939315 1.904141505 -0.019448 156 17 SH12619 12619 MT_15S MT_15S 40.495339 167.51517 40.495339 128.019831 84.257585 1.925609007 -0.01948 53 92 SH6092 6092 snR37 376-386 + 3' 376 25.421052 99.889331 62.6551915 1.796957062 -0.019504 122 43 SH21889 21889 copy of SH18799 23.826482 88.845388 56.335935 1.750785507 -0.019518 151 78 SH3427 3427 Trp1 5' flank 24.276854 92.17922 58.228037 1.765132149 -0.019525 129 11 SH21871 21871 copy of SH18601 25.44975 100.034058 62.741904 1.797557694 -0.019532 84 85 SH8998 8998 snR17a / U3a U3a 276 295 31.323478 114.654674 72.989076 1.863257866 -0.019535 113 12 SH13605 13605 MT ATP8/AAP1 ATP8 23.313575 107.344237 23.313575 85.030662 54.1721185 1.73377582 -0.019559 143 41 SH18359 18359 YMR033W_13_337787_339276_INTRON_31_116 intron 22.471866 100.531545 22.471866 79.059679 50.7657725 1.705570999 -0.019562 137 16 SH7489 7489 snR71 snR71 61 77 32.839157 116.838611 74.838884 1.874127303 -0.019564 65 10 SH4789 4789 snR5 snR5 116 135 24.292472 92.301619 58.2970455 1.765646545 -0.019589 62 12 SH17188 17188 YHR021C_8_148660_147862_INTRON_4_553 intron 33.182891 149.52558 33.182891 117.342689 75.26279 1.876580314 -0.019592 75 21 SH15687 15687 YBR191W_2_606228_607098_INTRON_12_399 intron 25.489173 124.723999 25.489173 100.234826 62.8619995 1.798388191 -0.019594 122 95 SH5726 5726 snR34 3' 25.972897 102.649025 64.310961 1.808284999 -0.019644 93 60 SH6421 6421 snR45 5' 25.666057 101.120991 63.393524 1.802044895 -0.019672 212 12 SH2793 2793 Pro6 tRNA-intron/exon 56 72 113.296021 234.620918 173.9584695 2.240445578 -0.01971 195 50 SH10328 10328 RUF7 RUF7 251 268 26.333921 104.463696 65.3988085 1.815569836 -0.019741 71 103 SH13263 13263 MT COX1 COX1-ai4 23.340946 107.591324 23.340946 85.250378 54.295662 1.734765133 -0.019762 131 36 SH4181 4181 telomerase RNA 5' 29.16172 111.394946 70.278333 1.846821451 -0.019772 120 30 SH13622 13622 MT ATP6 ATP6 24.545388 117.757859 24.545388 94.212471 59.3789295 1.773632364 -0.019773 101 91 SH16302 16302 YDR450W_4_1359912_1360787_INTRON_48_482 intron 26.960088 132.802539 26.960088 106.842451 66.9012695 1.825434359 -0.019777 200 30 SH17940 17940 YLR093C_12_327416_326514_INTRON_17_157 3' exon 26.490045 130.742614 26.490045 105.252569 65.871307 1.818696281 -0.019808 15 4 SH20833 20833 YKR095W-A spliced 27.325497 107.611744 67.4686205 1.82910183 -0.019811 152 93 SH9425 9425 RUF2 5' 23.327105 85.154374 54.2407395 1.734325602 -0.019829 108 45 SH16793 16793 YGL103W_7_310965_311925_INTRON_50_560 intron/exon 21.907845 96.239119 21.907845 75.331274 48.6195595 1.68681102 -0.019832 134 87 SH5014 5014 snR10 snR10 101 122 23.22027 84.373359 53.7968145 1.73075656 -0.019879 83 49 SH6936 6936 snR58 snR58 41 58 87.111321 196.042264 141.5767925 2.150992069 -0.019881 185 41 SH7665 7665 snoRNA cluster1 snR78 23.90216 112.346782 23.90216 89.444622 56.673391 1.753379199 -0.01989 118 3 SH13745 13745 MT COB Exon1 23.188106 106.326909 23.188106 84.138803 53.6634545 1.729678626 -0.019893 4 14 SH21099 21099 YNL044W spliced 25.027136 97.885976 61.456556 1.788568219 -0.01992 115 100 SH15876 15876 YDL082W_4_308423_309387_INTRON_5_369 intron 23.604408 109.822943 23.604408 87.218535 55.4114715 1.743599683 -0.019921 34 102 SH12494 12494 MT_tRNA Pro 5' 22.273541 99.033633 22.273541 77.760092 50.0168165 1.699116046 -0.019926 62 101 SH14312 14312 MT VAR1 includes 5’ processing site VAR1 22.499793 100.776875 22.499793 79.277082 50.8884375 1.706619116 -0.019931 201 57 SH12551 12551 MT_15S 5' 24.280435 115.527039 24.280435 92.246604 58.2635195 1.765396715 -0.019955 70 14 SH14129 14129 MT COB intronic 23.223502 106.629355 23.223502 84.405853 53.8146775 1.730900742 -0.019978 94 55 SH14108 14108 MT COB cytbi4/intronic 23.844857 111.875727 23.844857 89.03087 56.4378635 1.751570565 -0.020024 126 104 SH3057 3057 Ser3 5' flank 25.137028 98.52118 61.829104 1.791192953 -0.020026 50 20 SH19483 19483 ADH1 27.033401 107.012008 67.0227045 1.826221949 -0.020045 7 39 SH6790 6790 snR50 3' 25.841567 102.026496 63.9340315 1.805732091 -0.020057 172 13 SH13746 13746 MT COB Exon1 24.394099 116.49902 24.394099 93.104921 58.74951 1.769004249 -0.020059 210 65 SH11956 11956 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6666 6681 1521.867934 2102.119346 1811.99364 3.258156669 -0.020082 150 73 SH13269 13269 MT COX1 intronic 22.83238 103.4022 22.83238 81.56982 52.2011 1.717679655 -0.020083 103 8 SH16289 16289 YDR450W_4_1359912_1360787_INTRON_48_482 intron 23.741604 111.002284 23.741604 88.26068 56.001142 1.748196883 -0.020092 37 20 SH1030 1030 Gly2 3' flank 24.575487 94.470866 59.5231765 1.7746861 -0.020101 209 93 SH2639 2639 Pro3 3' flank 24.42504 93.340965 58.8830025 1.769989947 -0.020105 16 59 SH3518 3518 Tyr1 3' flank 26.403088 104.840657 65.6218725 1.817048619 -0.020107 13 101 SH14188 14188 MT COB Exon6 27.09453 133.240654 27.09453 107.146124 67.120327 1.826854064 -0.020143 209 60 SH9271 9271 RUF1 5' 24.177295 91.498321 57.837808 1.762211825 -0.02015 132 48 SH18310 18310 YML073C_13_124172_123227_INTRON_16_430 intron 27.517355 134.551509 27.517355 108.034154 67.7757545 1.831074361 -0.020185 72 31 SH5071 5071 snR11 5' 23.182763 84.126755 53.654759 1.729608248 -0.0202 163 3 SH306 306 Arg4 3' flank 24.641414 94.978909 59.8101615 1.776774975 -0.02021 209 34 SH11813 11813 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5951 5969 26.101744 103.34019 64.720967 1.811044997 -0.020225 38 2 SH4218 4218 telomerase RNA telomerase 126 138 29.024538 111.143549 70.0840435 1.845619151 -0.020238 200 16 SH11403 11403 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3901 3916 4802.958319 5779.295135 5291.126727 3.723548163 -0.020267 136 61 SH6313 6313 snR42 346-351 + 3' 346 24.036497 90.468997 57.252747 1.757796329 -0.020281 199 17 SH9078 9078 snR14 / U4 RNA U4 6 22 110.10616 230.048679 170.0774195 2.230646658 -0.020289 196 30 SH14254 14254 MT VAR1 includes 5’ processing site 5' 26.493977 130.807235 26.493977 105.313258 65.9036175 1.818909254 -0.020303 135 50 SH21300 21300 YPL198W spliced 26.076756 103.222525 64.6496405 1.810566114 -0.020316 175 48 SH11289 11289 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3331 3344 45.655795 135.605999 90.630897 1.957276278 -0.020327 75 60 SH1535 1535 Leu3 3' flank 25.205191 98.882554 62.0438725 1.792698897 -0.020331 106 36 SH434 434 Asp1 5' flank - tRNA10 5' flank 10 21.487971 72.658857 47.073414 1.672775697 -0.020344 93 36 SH16855 16855 YGL183C_7_157071_156547_INTRON_4_86 3' exon 38.533017 162.724504 38.533017 125.191487 81.862252 1.913083688 -0.020356 186 13 SH331 331 Arg5 5' flank - tRNA7 5' flank 7 25.980034 102.742563 64.3612985 1.808624797 -0.020362 27 53 SH18674 18674 YNL112W_14_413636_416278_INTRON_1274_2275 intron 22.627665 101.803407 22.627665 80.175742 51.4017035 1.710977512 -0.020369 32 82 SH15537 15537 YBR078W_2_393082_394818_INTRON_59_388 intron 25.852869 126.961797 25.852869 102.108928 63.9808985 1.806050335 -0.020382 99 64 SH15491 15491 YBL092W_2_45639_46364_INTRON_1_333 intron 24.843882 120.375958 24.843882 96.532076 60.687979 1.783102675 -0.020386 190 60 SH9582 9582 RUF3 RUF3 296 315 23.020206 82.957909 52.9890575 1.724186195 -0.020404 153 77 SH3415 3415 Trp1 5' flank 25.188831 98.807531 61.998181 1.792378948 -0.020409 214 24 SH19785 19785 Negative Control 25.444188 100.077243 62.7607155 1.797687886 -0.020434 16 90 SH5012 5012 snR10 snR10 91 110 23.556047 86.906413 55.23123 1.742184715 -0.020452 73 6 SH8326 8326 snoRNA cluster4 intergenic 24.674204 118.924657 24.674204 95.250453 59.9623285 1.777878489 -0.020452 208 72 SH83 83 Ala2 15-63 51 63 24.430614 93.419393 58.9250035 1.770299617 -0.020488 134 63 SH13541 13541 MT COX1 intronic 23.466413 108.71091 23.466413 86.244497 54.855455 1.739219822 -0.020499 191 79 SH1367 1367 Leu1 5' flank 27.742458 108.521336 68.131897 1.833350481 -0.020502 96 83 SH17982 17982 YLR275W_12_694378_694800_INTRON_6_95 5' exon 24.524701 117.655317 24.524701 94.130616 59.3276585 1.773257208 -0.020537 90 92 SH13200 13200 MT COX1 Exon4 22.238649 98.814983 22.238649 77.576334 49.9074915 1.698165741 -0.020551 38 64 SH20218 20218 YDR092W spliced 25.619502 100.959574 63.289538 1.801331925 -0.020561 199 34 SH20307 20307 YER003C spliced 31.057083 114.325431 72.691257 1.861482179 -0.020565 5 58 SH20600 20600 YHR041C spliced 25.036197 98.028087 61.532142 1.789102034 -0.020643 50 77 SH1222 1222 Ile1 71-74 + 3' flank 71 23.318354 85.164601 54.2414775 1.734331511 -0.020668 208 69 SH13375 13375 MT COX1 intronic 22.956065 104.471879 22.956065 82.515814 52.7359395 1.722106687 -0.02068 99 69 SH19197 19197 YPL081W_16_404945_406039_INTRON_8_508 intron 24.596651 118.283794 24.596651 94.687143 59.641897 1.775551448 -0.020685 36 45 SH19694 19694 Negative Control 26.257072 104.15774 65.207406 1.814296924 -0.020711 135 92 SH12703 12703 MT ORF 8 (hypothetical) ORF8 24.366015 116.324104 24.366015 92.958089 58.662052 1.768357251 -0.020722 39 90 SH3825 3825 RNaseP RNaseP 91 106 47.173331 137.826612 92.4999715 1.966141599 -0.020726 27 5 SH2833 2833 Pro7 5' flank 25.134073 98.561394 61.8477335 1.791323789 -0.020736 180 39 SH12882 12882 MT COX1 COX1ai1 23.542214 109.375056 23.542214 86.832842 55.187528 1.741840941 -0.020775 126 101 SH8851 8851 LSR1 / U2 RNA U2 896 913 298.201358 500.304953 399.2531555 2.601248357 -0.020776 90 36 SH15804 15804 YDL061C_4_341182_340627_INTRON_1_408 intron 32.574928 148.095777 32.574928 116.520849 74.5478885 1.872435347 -0.020803 44 59 SH7455 7455 snR69 3' 25.295292 99.370577 62.3329345 1.794717573 -0.020857 135 6 SH1180 1180 His1 3' flank 23.549297 86.894159 55.221728 1.742109992 -0.02087 47 58 SH13729 13729 MT COB Exon1 22.819287 103.362506 22.819287 81.543219 52.181253 1.717514503 -0.020878 106 17 SH5948 5948 snR36 snR36 196 220 21.499377 72.770301 47.134839 1.673342028 -0.020887 180 83 SH13122 13122 MT COX1 COX1ai3 25.872834 127.122146 25.872834 102.249312 64.061073 1.806594209 -0.020889 8 97 SH4177 4177 telomerase RNA 5' 26.42444 105.012616 65.718528 1.817687827 -0.020893 38 25 SH5984 5984 snR36 3' 23.253431 84.707045 53.980238 1.732234795 -0.020898 148 104 SH15089 15089 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.336364 116.089605 24.336364 92.753241 58.5448025 1.767488345 -0.020898 87 27 SH4974 4974 snR10 5' 26.399665 104.888699 65.644182 1.817196241 -0.020899 20 102 SH7507 7507 snR71 3' 24.463471 93.705541 59.084506 1.771473609 -0.020901 73 15 SH974 974 Gly1 3' flank 37.008551 122.963144 79.9858475 1.903013151 -0.020907 187 4 SH16832 16832 YGL178W_7_167356_170575_INTRON_4_643 intron 26.621455 131.626294 26.621455 106.004839 66.313147 1.821599639 -0.020913 14 67 SH18654 18654 YNL112W_14_413636_416278_INTRON_1274_2275 intron 24.726113 119.415371 24.726113 95.689258 60.2076855 1.779651932 -0.020917 214 70 SH4371 4371 telomerase RNA telomerase 891 907 35.236094 120.360449 77.7982715 1.890969948 -0.020919 115 4 SH15029 15029 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.385776 124.211022 25.385776 99.825246 62.605511 1.796612565 -0.020923 117 80 SH10598 10598 RUF8 RUF8 916 932 25.242585 99.114676 62.1786305 1.793641152 -0.020931 41 14 SH1933 1933 Lys1 3' flank 22.193571 77.30787 49.7507205 1.696799375 -0.020958 136 18 SH5759 5759 snR35 5' 22.43681 78.935301 50.6860555 1.704888495 -0.020959 56 5 SH17679 17679 YKL006W_11_431544_432358_INTRON_130_527 intron 126.278101 378.852579 126.278101 253.574478 189.9262895 2.278585084 -0.020996 61 7 SH12989 12989 MT COX1 COX1ai2 25.33768 123.930291 25.33768 99.592611 62.4651455 1.795637756 -0.021005 181 17 SH21534 21534 copy of SH3940 23.082439 83.467057 53.274748 1.726521404 -0.021043 116 70 SH4389 4389 telomerase RNA telomerase 981 1000 22.668702 80.510086 51.589394 1.712560426 -0.021061 102 81 SH17277 17277 YHR141C_8_382752_381991_INTRON_5_445 intron 37.003208 158.969427 37.003208 122.966219 79.9847135 1.903006994 -0.021086 187 90 SH14471 14471 MT 21S rRNA 21S rRNA3 22.612953 101.748445 22.612953 80.135492 51.3742225 1.710745262 -0.021103 138 65 SH14913 14913 MT tRNA Tyr 5' / tRNA 74.17741 250.288839 74.17741 177.111429 125.6444195 2.099143204 -0.021133 108 32 SH6706 6706 snR49 snR49 56 73 23.135535 83.863937 53.499736 1.728351639 -0.021144 126 92 SH20885 20885 YLR275W spliced 23.439843 86.105638 54.7727405 1.738564471 -0.021145 163 28 SH4515 4515 U3b (snR17b) U3b 131 148 28.943712 111.037128 69.99042 1.8450386 -0.021226 50 93 SH14561 14561 MT 21S rRNA 21S rRNA3 33.089714 149.392424 33.089714 117.30271 75.196212 1.876195964 -0.021264 45 11 SH15228 15228 MT COX3 cox3 22.415397 100.235371 22.415397 78.819974 50.6176855 1.704302283 -0.021318 198 65 SH10136 10136 RUF6 RUF6 526 538 25.842551 102.133554 63.9880525 1.806098892 -0.021332 49 43 SH20844 20844 YLR048W spliced 30.917941 114.165968 72.5419545 1.860589253 -0.021347 161 98 SH15864 15864 YDL079C_4_314747_312950_INTRON_413_704 intron 24.086346 114.023505 24.086346 90.937159 57.5117525 1.759756602 -0.021354 163 45 SH13751 13751 MT COB Exon1 22.320468 99.507785 22.320468 78.187317 50.2538925 1.701169706 -0.02137 163 82 SH13188 13188 MT COX1 Exon4 23.707952 110.834748 23.707952 88.126796 55.917374 1.747546768 -0.021378 69 80 SH18691 18691 YNL112W_14_413636_416278_INTRON_1274_2275 intron 24.294042 115.778083 24.294042 92.484041 58.3890415 1.766331346 -0.02139 73 97 SH20142 20142 YDL108W spliced 1932.618521 2601.140252 2266.879387 3.355428413 -0.021391 114 31 SH6397 6397 snR43 3' 22.660602 80.483735 51.5721685 1.712415393 -0.021414 146 20 SH20047 20047 YBR191W spliced 48.851246 140.309644 94.580445 1.975801353 -0.021446 53 18 SH7460 7460 snR71 5' 25.937239 102.616149 64.276694 1.808053531 -0.021448 140 83 SH15379 15379 YBL027W_2_168385_169338_INTRON_3_386 intron 22.21281 98.688092 22.21281 77.475282 49.844046 1.697613288 -0.021461 87 50 SH17802 17802 YKL190W_11_82949_83552_INTRON_53_128 intron 625.214272 1577.002084 625.214272 952.787812 789.001042 2.897077577 -0.021467 9 22 SH92 92 Ala2 3' flank 28.045097 109.206157 68.625627 1.836486325 -0.021487 8 88 SH9948 9948 RUF5-1 RUF5-1 546 562 23.5529 86.977909 55.2654045 1.742453353 -0.021495 206 39 SH20557 20557 YHL001W spliced 31.251831 114.660995 72.956413 1.863063473 -0.02152 115 8 SH687 687 Gln3 5' flank 23.250993 84.748042 53.9995175 1.732389879 -0.021563 84 63 SH479 479 Asp2 5' flank 158.373245 299.849799 229.111522 2.36004693 -0.021596 22 77 SH20888 20888 YLR275W spliced 24.659172 95.250297 59.9547345 1.777823484 -0.021615 112 74 SH21066 21066 YMR201C spliced 62.220691 159.651775 110.936233 2.045073415 -0.021616 84 49 SH16967 16967 YGR034W_7_555923_556666_INTRON_20_496 intron 29.491437 140.562595 29.491437 112.071158 70.7812975 1.849918519 -0.02164 86 7 SH20336 20336 YER074W-A spliced 23.807875 88.905868 56.3568715 1.750946876 -0.021676 46 5 SH5899 5899 snR36 5' 23.238152 84.669587 53.9538695 1.732022597 -0.021744 39 32 SH21740 21740 copy of SH12550 23.26608 84.877606 54.071843 1.732971172 -0.021772 150 20 SH15904 15904 YDL083C_4_307788_306925_INTRON_25_456 intron 26.512225 131.042628 26.512225 105.530403 66.021314 1.819684164 -0.021819 177 18 SH8242 8242 snoRNA cluster 3; 3' 24.645241 118.812792 24.645241 95.167551 59.906396 1.777473193 -0.021847 151 10 SH3138 3138 Ser4 96-101 + 3' flank 96 22.975395 82.758114 52.8667545 1.72318265 -0.021859 109 5 SH21032 21032 YMR125W spliced 1277.136168 1798.732714 1537.934441 3.186937823 -0.02189 22 63 SH10651 10651 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 141 158 84.471025 192.356726 138.4138755 2.141179629 -0.021922 18 25 SH12969 12969 MT COX1 COX1ai2 22.306712 99.445645 22.306712 78.138933 50.2228225 1.700901116 -0.021924 147 75 SH10723 10723 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 501 521 25.022566 98.053076 61.537821 1.789142114 -0.021932 106 55 SH14025 14025 MT COB Exon4 21.697303 94.807981 21.697303 74.110678 47.9039905 1.680371693 -0.021933 149 21 SH7444 7444 snR69 3' 24.601668 94.846459 59.7240635 1.776149349 -0.021934 101 63 SH3186 3186 Ser5 tRNA 51 63 29.649876 112.325373 70.9876245 1.851182643 -0.021949 190 10 SH14175 14175 MT COB intronic 24.204021 115.070981 24.204021 91.86696 58.0354905 1.763693659 -0.021958 8 21 SH14249 14249 MT tRNA Ser 3' 23.718704 110.980128 23.718704 88.261424 55.990064 1.748110964 -0.021962 141 82 SH7316 7316 snR66 71-86 + 3' 71 22.426988 78.949183 50.6880855 1.704905888 -0.021963 146 102 SH4599 4599 snR3 5' 110.777996 231.261451 171.0197235 2.2330462 -0.021974 168 92 SH9153 9153 snR7 U5 RNA U5 36 52 29.478236 112.071135 70.7746855 1.849877948 -0.022006 20 83 SH1031 1031 Gly2 3' flank 24.396319 93.307817 58.852068 1.769761728 -0.022007 160 82 SH5452 5452 snR32 5' 23.921947 89.784802 56.8533745 1.754756247 -0.022009 13 102 SH20244 20244 YDR367W spliced 27.204907 107.486811 67.345859 1.828310897 -0.022052 183 32 SH3916 3916 RNase MRP 5' - 12 12 28.347757 109.86474 69.1062485 1.839517318 -0.022064 6 86 SH8665 8665 LSR1 / U2 RNA 5' 22.058189 76.495644 49.2769165 1.692643524 -0.02208 82 102 SH17749 17749 YKL157W_11_154993_158183_INTRON_282_664 intron 35.792856 156.003023 35.792856 121.210167 78.5015115 1.894878019 -0.022092 190 74 SH19190 19190 YPL079W_16_406631_407534_INTRON_12_432 3' exon 24.405074 116.78806 24.405074 93.382986 58.89403 1.770071273 -0.022106 24 48 SH5310 5310 snR30 snR30 401 415 29.451754 112.03732 70.744537 1.849692909 -0.022116 211 45 SH17959 17959 YLR185W_12_522665_523290_INTRON_8_366 intron 31.230796 144.894392 31.230796 114.663596 72.947196 1.863008603 -0.022117 148 59 SH12674 12674 MT tRNA Trp 5' 22.928798 104.370847 22.928798 82.442049 52.6854235 1.721690475 -0.022118 18 23 SH21850 21850 copy of SH17600 26.573301 105.865337 66.219319 1.82098471 -0.022151 151 84 SH19496 19496 YPT1 25.610716 101.042246 63.326481 1.801585355 -0.022157 2 74 SH6383 6383 snR43 snR43 156 175 23.00027 82.965147 52.9827085 1.724134156 -0.022159 205 35 SH7211 7211 snR64 3' 24.361329 93.063112 58.7122205 1.768728506 -0.02219 206 48 SH8789 8789 LSR1 / U2 RNA U2 586 602 42.15332 130.629445 86.3913825 1.936470424 -0.022202 130 6 SH15291 15291 MT 9S rRNA 9S 23.276208 107.266927 23.276208 84.990719 54.1334635 1.733465814 -0.022205 48 19 SH17255 17255 YHR097C_8_298611_297387_INTRON_126_249 3' exon 26.880625 132.693204 26.880625 106.812579 66.846602 1.825079336 -0.022207 135 103 SH8387 8387 snoRNA cluster 5 snR190 72.690775 246.726354 72.690775 175.035579 123.863177 2.092942215 -0.022208 16 44 SH16156 16156 YDR129C_4_715372_713333_INTRON_22_132 exon/intron 25.410841 124.46169 25.410841 100.050849 62.730845 1.797481138 -0.022211 207 89 SH16493 16493 YER117W_5_396765_397649_INTRON_43_513 exon/intron 24.517382 117.755199 24.517382 94.237817 59.3775995 1.773622636 -0.022216 176 66 SH15450 15450 YBL087C_2_60732_59815_INTRON_43_546 intron 26.09642 128.571987 26.09642 103.475567 64.7859935 1.811481123 -0.022222 191 88 SH18040 18040 YLR333C_12_796335_795573_INTRON_1_423 intron 27.766079 135.436186 27.766079 108.670107 68.218093 1.833899575 -0.02223 201 74 SH3622 3622 Val1 3' flank 25.857649 102.281191 64.06942 1.806650792 -0.022232 146 44 SH1040 1040 Gly3 5' flank 24.574439 94.673669 59.624054 1.775421502 -0.022273 18 68 SH21284 21284 YPL143W spliced 28.905207 111.021355 69.963281 1.844870168 -0.022291 130 24 SH3650 3650 Val2 5' flank - tRNA8 8 23.539943 86.953913 55.246928 1.742308134 -0.022293 135 42 SH12855 12855 MT COX1 COX1ai1 27.607326 134.950939 27.607326 108.343613 67.9754695 1.832352216 -0.022304 103 9 SH1394 1394 Leu1 tRNA-intron 41 57 28.889213 110.990884 69.9400485 1.844725929 -0.022328 162 34 SH17185 17185 YHR021C_8_148660_147862_INTRON_4_553 intron 24.401781 116.781629 24.401781 93.379848 58.8908145 1.770047561 -0.022332 68 39 SH10406 10406 RUF8 5' 24.932088 97.399961 61.1660245 1.786510254 -0.022338 117 103 SH20781 20781 YKL006W spliced 27.191057 107.474096 67.3325765 1.828225233 -0.022339 4 88 SH17564 17564 YJL189W_10_75932_76473_INTRON_7_392 intron 23.535953 109.464525 23.535953 86.928572 55.2322625 1.742192834 -0.022342 110 20 SH21192 21192 YOL120C spliced 24.981744 97.784269 61.3830065 1.788048156 -0.022375 95 5 SH14401 14401 MT 21S rRNA 21S rRNA3 23.47015 108.913263 23.47015 86.443113 54.9566315 1.740020105 -0.022391 172 46 SH4879 4879 snR8 176-190 + 3' 176 24.728905 95.855588 60.2922465 1.780261466 -0.022394 79 6 SH9631 9631 RUF4 5' 34.944577 120.036922 77.4907495 1.889249861 -0.022416 174 26 SH4708 4708 snR4 snR4 76 92 24.577092 94.708925 59.6430085 1.775559542 -0.022429 55 9 SH2947 2947 Ser1 5' flank 25.407009 100.050197 62.728603 1.797465616 -0.022445 64 35 SH5280 5280 snR30 snR30 251 266 26.425061 105.145459 65.78526 1.818128595 -0.022467 78 65 SH5797 5797 snR35 snR35 171 195 22.887189 82.171159 52.529174 1.720400572 -0.022477 61 49 SH379 379 Asn1 5' flank 32.861745 117.040684 74.9512145 1.874778674 -0.022516 30 74 SH7669 7669 snoRNA cluster1 snR78 23.383911 108.199346 23.383911 85.815435 54.599673 1.737190042 -0.022528 13 19 SH9400 9400 RUF1 3' 25.488582 100.463302 62.975942 1.799174672 -0.022533 96 77 SH13969 13969 MT COB Cytbi3 22.767738 103.08072 22.767738 81.312982 52.04036 1.716340292 -0.022539 162 84 SH17085 17085 YHL001W_8_104270_105084_INTRON_130_527 intron 134.513662 399.204557 134.513662 265.690895 200.1022785 2.301252034 -0.022543 138 57 SH13337 13337 MT COX1 COX1-ai5a 22.460454 100.682125 22.460454 79.221671 50.8410625 1.706214618 -0.022553 108 13 SH10554 10554 RUF8 RUF8 696 712 23.883453 89.552078 56.7177655 1.753719113 -0.022556 161 35 SH1898 1898 Lys1 5' flank 26.365397 104.852924 65.6091605 1.816964481 -0.022557 178 78 SH126 126 Arg1 6-12 6 18 26.688504 106.425992 66.557248 1.823195357 -0.022559 209 99 SH6958 6958 snR58 3' 24.107576 91.207267 57.6574215 1.760855216 -0.022562 99 96 SH1824 1824 Leu8 3' flank 23.420607 86.090947 54.755777 1.738429946 -0.022566 110 17 SH14613 14613 MT 21S rRNA Sce1 endonuc 27.182543 133.652467 27.182543 107.469924 67.3262335 1.828184319 -0.02258 189 2 SH17931 17931 YLR093C_12_327416_326514_INTRON_17_157 5' exon 24.449841 117.215069 24.449841 93.765228 59.1075345 1.771642844 -0.022587 188 99 SH18189 18189 YML024W_13_225889_226697_INTRON_4_401 intron 27.983613 136.13129 27.983613 109.147677 68.565645 1.836106566 -0.022676 106 19 SH10426 10426 RUF8 RUF8 56 78 23.21651 84.593817 53.9051635 1.731630368 -0.022686 88 104 SH12940 12940 MT COX1 COX1ai2 23.409751 108.43406 23.409751 86.024309 54.71703 1.738122516 -0.022721 99 24 SH4474 4474 U3b (snR17b) 5' 25.804178 102.053168 63.928673 1.80569569 -0.022722 72 32 SH7036 7036 snR62 5' 29.059775 111.362748 70.2112615 1.846406776 -0.022734 212 8 SH3364 3364 Thr4 5' flank 23.633148 87.692311 55.6627295 1.745564499 -0.022751 202 29 SH9088 9088 snR14 / U4 RNA U4 56 75 24.10662 91.221326 57.663973 1.760904562 -0.022788 146 75 SH14099 14099 MT COB Cytbi4 24.975857 121.75712 24.975857 97.781263 61.37856 1.788016695 -0.022796 73 36 SH3417 3417 Trp1 5' flank 25.365926 99.873491 62.6197085 1.796711042 -0.022799 16 92 SH10118 10118 RUF6 RUF6 436 452 27.360446 107.855982 67.608214 1.829999463 -0.022802 50 64 SH2375 2375 Phe4 5' flank 31.363362 114.893802 73.128582 1.864087152 -0.022804 84 51 SH2791 2791 Pro6 tRNA-intron 46 62 67.586319 167.590135 117.588227 2.070363842 -0.022811 120 100 SH14387 14387 MT 21S rRNA 5' 23.960619 113.104293 23.960619 90.143674 57.0521465 1.756271989 -0.022811 112 17 SH16387 16387 YER007C-A_5_166884_166236_INTRON_12_114 3' exon 23.141007 106.19298 23.141007 84.051973 53.59649 1.729136349 -0.022829 128 96 SH16723 16723 YGL033W_7_435621_436347_INTRON_56_125 exon/intron 101.782768 318.918004 101.782768 218.135236 159.959002 2.204008686 -0.022844 29 89 SH11650 11650 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5136 5153 36.062118 121.65273 78.857424 1.896842586 -0.022874 61 8 SH16560 16560 YER133W_5_432491_433954_INTRON_178_702 intron 23.193066 106.632272 23.193066 84.439206 53.816136 1.730912512 -0.022887 101 54 SH555 555 Cys1 3' flank 21.860724 75.253721 48.5572225 1.686253837 -0.02289 18 26 SH18286 18286 YML067C_13_140214_139063_INTRON_32_124 intron 22.259135 99.158691 22.259135 77.899556 50.0793455 1.699658644 -0.022927 43 37 SH14937 14937 MT tRNA Asn 3' 23.062924 105.552018 23.062924 83.489094 53.276009 1.726531684 -0.022928 34 50 SH18778 18778 YNL265C_14_145280_144279_INTRON_28_132 intron 24.363842 116.523616 24.363842 93.159774 58.761808 1.76909515 -0.023005 108 36 SH5858 5858 snR35 snR35 476 492 25.256275 99.348456 62.3023655 1.794504536 -0.02306 171 97 SH16107 16107 YDR064W_4_579453_580447_INTRON_22_560 intron 29.25191 140.025498 29.25191 111.773588 70.512749 1.848267646 -0.023072 214 61 SH13943 13943 MT COB Cytbi3 24.199199 115.136538 24.199199 91.937339 58.068269 1.76393888 -0.023085 12 90 SH20414 20414 YGL030W spliced 33.014916 117.298184 75.15655 1.875966836 -0.023091 138 75 SH3520 3520 Tyr1 3' flank 29.182423 111.634611 70.408517 1.847625197 -0.02311 155 61 SH1934 1934 Lys1 3' flank 22.809162 81.660712 52.234937 1.717961075 -0.02311 48 12 SH3167 3167 Ser5 5' flank 24.514268 94.301646 59.407957 1.773844618 -0.023119 83 18 SH6607 6607 snR47 3' 23.893297 89.677119 56.785208 1.754235221 -0.023129 131 53 SH3321 3321 Thr3 5' flank 25.26377 99.392405 62.3280875 1.794683801 -0.023146 12 76 SH4424 4424 telomerase RNA telomerase 1156 1177 23.018877 83.191698 53.1052875 1.725137764 -0.023205 207 12 SH10382 10382 RUF7 3' 25.525274 100.702997 63.1141355 1.800126638 -0.023253 2 59 SH13106 13106 MT COX1 COX1ai3 23.036013 105.358232 23.036013 83.322219 53.179116 1.725741114 -0.023268 79 80 SH10391 10391 RUF7 3' 25.110318 98.644697 61.8775075 1.791532811 -0.023336 88 42 SH13865 13865 MT COB intronic 23.744311 111.330146 23.744311 88.585835 56.165073 1.749466328 -0.023387 3 80 SH21834 21834 copy of SH16599 24.535932 94.491953 59.5139425 1.774618721 -0.023396 131 51 SH15878 15878 YDL082W_4_308423_309387_INTRON_5_369 intron 25.324827 124.041625 25.324827 99.716798 62.5208125 1.796024613 -0.02341 145 49 SH17860 17860 YLL050C_12_40413_39803_INTRON_15_193 5' exon 28.407189 137.474292 28.407189 110.067103 69.237146 1.840339158 -0.023434 187 82 SH15825 15825 YDL064W_4_337486_338069_INTRON_39_148 intron 22.291061 99.448453 22.291061 78.157392 50.2242265 1.700913257 -0.023488 201 76 SH7983 7983 snoRNA cluster 2 snR57 57.505328 209.461056 57.505328 152.955728 105.230528 2.02214175 -0.023506 33 3 SH13699 13699 MT tRNAGlu (and 5' processing site for COB) 5' 22.535906 101.343883 22.535906 79.807977 51.1719415 1.709031895 -0.023509 202 72 SH21006 21006 YML094W spliced 24.282523 92.600998 58.4417605 1.76672329 -0.023528 192 60 SH3563 3563 Tyr2 86-89 + 3' flank 86 23.405173 86.065924 54.7355485 1.738269474 -0.02356 31 88 SH9698 9698 RUF4 RUF4 266 285 25.473731 100.471478 62.9726045 1.799151656 -0.023576 170 78 SH3038 3038 Ser2 3' flank 26.439687 105.312767 65.876227 1.818728717 -0.023602 188 48 SH15877 15877 YDL082W_4_308423_309387_INTRON_5_369 intron 23.780988 111.665282 23.780988 88.884294 56.332641 1.750760112 -0.023624 119 25 SH18346 18346 YML124C_13_23684_22049_INTRON_26_323 intron 29.92776 141.761012 29.92776 112.833252 71.380506 1.853579622 -0.023657 181 55 SH2972 2972 Ser1 3' flank 22.607935 80.308526 51.4582305 1.711454848 -0.023661 55 51 SH21417 21417 Ser4 spliced 31.640028 115.341033 73.4905305 1.866231382 -0.023663 194 87 SH3255 3255 Thr1 3' flank 30.63695 113.8824 72.259675 1.858896004 -0.023664 170 52 SH4041 4041 SRP RNA SRP RNA 96 113 22.490402 79.513227 51.0018145 1.707585627 -0.02367 88 17 SH17918 17918 YLR061W_12_263195_263949_INTRON_13_401 intron/exon 21.725546 95.151091 21.725546 74.425545 48.0755455 1.681924221 -0.023671 65 64 SH17341 17341 YIL018W_9_316766_317930_INTRON_5_404 intron 25.69804 126.297668 25.69804 101.599628 63.648834 1.803790452 -0.023685 181 99 SH1999 1999 Lys3 5' flank 24.66449 95.497454 60.080972 1.77873695 -0.023729 11 54 SH634 634 Gln2 5' flank 25.195497 99.098846 62.1471715 1.793421367 -0.023735 166 57 SH7318 7318 snR66 81-86 + 3' 81 24.475915 94.07542 59.2756675 1.772876453 -0.023769 211 87 SH3746 3746 Val4 5' flank 24.446862 93.861166 59.154014 1.77198422 -0.023816 163 13 SH8552 8552 snR19 / U1 RNA U1 256 270 38.894776 125.940551 82.4176635 1.916020298 -0.023822 161 75 SH14370 14370 MT ORF9 and ORF10 (hypothetical) intergenic / ORF10 24.546292 118.15786 24.546292 94.611568 59.57893 1.775092699 -0.023823 201 75 SH21382 21382 Lys3_4 spliced 33.694139 118.330465 76.012302 1.880883885 -0.023845 84 94 SH5736 5736 snR34 3' 23.746131 88.643205 56.194668 1.74969511 -0.023858 94 54 SH431 431 Asp1 5' flank 23.908588 89.858522 56.883555 1.75498673 -0.023876 202 103 SH3219 3219 Thr1 5' flank 23.624559 87.737079 55.680819 1.745705615 -0.023941 206 9 SH12737 12737 MT COX1 exon1 / coxai1 26.060985 128.500788 26.060985 103.439803 64.750394 1.811242415 -0.02397 151 69 SH19376 19376 YPR043W_16_654161_654842_INTRON_3_405 intron 26.829845 132.636099 26.829845 106.806254 66.8180495 1.824893794 -0.023989 30 99 SH4013 4013 SRP RNA 5' 24.469184 94.049729 59.2594565 1.772757664 -0.024029 77 10 SH5902 5902 snR36 5' 23.398206 86.056585 54.7273955 1.73820478 -0.024031 139 60 SH9459 9459 RUF2 RUF2 136 155 24.537695 94.566832 59.5522635 1.774898273 -0.024031 204 87 SH10281 10281 RUF7 RUF7 16 33 28.735262 110.77685 69.756056 1.843581918 -0.024043 176 41 SH20354 20354 YER117W spliced 23.070596 83.64475 53.357673 1.727196881 -0.024066 26 95 SH9785 9785 RUF4 RUF4 701 722 22.563854 80.042412 51.303133 1.710143888 -0.024068 209 96 SH8038 8038 snoRNA cluster 2 snR55/intergenic 24.280131 115.91531 24.280131 92.635179 58.457655 1.76684139 -0.024076 24 30 SH10339 10339 RUF7 RUF7 306 323 22.57118 80.09437 51.332775 1.710394742 -0.024097 49 53 SH15638 15638 YBR186W_2_600511_602318_INTRON_1552_1664 intron 22.619291 102.040471 22.619291 80.42118 51.5202355 1.71197784 -0.024099 77 53 SH17 17 Ala1 5' flank 27.697324 108.635803 68.1665635 1.8335714 -0.024119 22 44 SH7708 7708 snoRNA cluster1 snR77 236.056226 646.909517 236.056226 411.853291 323.9547585 2.510484364 -0.024155 50 80 SH5181 5181 snR13 snR13 61 77 27.241357 107.683553 67.462455 1.829062141 -0.024156 83 94 SH12794 12794 MT COX1 COX1ai1 23.759202 111.529039 23.759202 88.769837 56.2645195 1.750234614 -0.024161 99 10 SH10147 10147 RUF6 RUF6 581 598 32.936774 117.247296 75.092035 1.875593874 -0.024199 111 61 SH18724 18724 YNL147W_14_350937_351380_INTRON_19_138 5' exon 28.476306 137.731423 28.476306 110.255117 69.3657115 1.841144845 -0.024215 75 11 SH18041 18041 YLR333C_12_796335_795573_INTRON_1_423 intron 27.201709 133.805909 27.201709 107.6042 67.4029545 1.828678934 -0.024226 49 102 SH7540 7540 snR79 snR79 41 57 49.611163 141.628578 95.6198705 1.980548151 -0.024228 180 99 SH15019 15019 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.639501 118.997359 24.639501 95.357858 59.9986795 1.778141692 -0.02424 31 10 SH16336 16336 YDR500C_4_1450856_1450201_INTRON_8_396 5' exon 24.329422 116.349803 24.329422 93.020381 58.6749015 1.768452369 -0.024246 190 98 SH7538 7538 snR79 snR79 31 48 41.633761 130.008396 85.8210785 1.933593968 -0.024252 115 85 SH19604 19604 AEP2/ATP13 2.1 72.243599 174.577136 123.4103675 2.091351646 -0.024273 114 103 SH19374 19374 YPR043W_16_654161_654842_INTRON_3_405 intron 25.441955 124.810125 25.441955 100.36817 62.9050625 1.798685598 -0.024276 70 16 SH7572 7572 snR189 5' 23.094476 83.84046 53.467468 1.728089618 -0.024304 192 50 SH15692 15692 YBR220C_2_663261_662457_INTRON_302_722 5' exon 26.155531 129.097554 26.155531 103.942023 65.048777 1.813239136 -0.02431 187 47 SH13608 13608 MT ATP8/AAP1 3' 23.754415 111.50327 23.754415 88.748855 56.251635 1.75013515 -0.024324 100 38 SH14364 14364 MT ORF9 and ORF10 (hypothetical) ORF9 24.732481 119.807987 24.732481 96.075506 60.4039935 1.781065652 -0.024351 147 64 SH21085 21085 YMR292W spliced 26.957504 107.097089 67.0272965 1.826251703 -0.024358 153 89 SH5266 5266 snR30 snR30 181 193 34.333502 119.281905 76.8077035 1.88540478 -0.024379 104 101 SH8317 8317 snoRNA cluster4 intergenic 24.48966 117.729549 24.48966 94.239889 59.3647745 1.773528822 -0.024399 130 94 SH8469 8469 snoRNA cluster 5 3' 25.746329 126.645346 25.746329 101.899017 63.822673 1.804974989 -0.024411 208 9 SH918 918 Glu3 3' flank 23.755211 88.763431 56.259321 1.750194486 -0.024416 23 53 SH12942 12942 MT COX1 COX1ai2 22.496372 101.111695 22.496372 79.615323 51.0558475 1.70804549 -0.024439 128 21 SH12917 12917 MT COX1 COX1ai2 38.831237 163.719317 38.831237 125.88808 82.3596585 1.915714537 -0.024462 73 61 SH2355 2355 Phe3 3' flank 22.853604 82.099141 52.4763725 1.719963806 -0.024473 139 80 SH10260 10260 RUF7 5' 30.582243 113.84682 72.2145315 1.858624598 -0.024478 103 2 SH4494 4494 U3b (snR17b) U3b 26 45 24.802482 96.633798 60.71814 1.783318459 -0.024599 104 80 SH13029 13029 MT COX1 COX1ai2 23.915908 112.895286 23.915908 89.979378 56.947643 1.755475754 -0.024601 48 92 SH16866 16866 YGL187C_7_150529_149708_INTRON_1_342 intron 26.10993 128.847092 26.10993 103.737162 64.923546 1.812402232 -0.024607 152 39 SH17647 17647 YJR145C_10_702761_701720_INTRON_15_270 intron 25.244894 123.659551 25.244894 99.414657 62.3297755 1.794695563 -0.024635 77 83 SH20904 20904 YLR316C spliced 74.548581 178.004111 126.276346 2.101322006 -0.024665 114 76 SH18124 18124 YLR388W_12_898158_898821_INTRON_1_488 intron 24.678843 119.37881 24.678843 95.699967 60.189405 1.77952005 -0.024682 206 86 SH15647 15647 YBR189W_2_604466_605466_INTRON_8_420 intron 24.610801 118.794363 24.610801 95.183562 59.8971815 1.777406387 -0.024683 102 96 SH15763 15763 YCR031C_3_178212_177492_INTRON_8_314 intron/exon 24.900289 121.291314 24.900289 97.391025 61.145657 1.786365616 -0.024688 7 27 SH13217 13217 MT COX1 COX1-ai4 23.919774 112.935813 23.919774 90.016039 56.9679065 1.75563026 -0.02469 115 79 SH1273 1273 Ile2 tRNA-intron 61 75 38.79483 125.849318 82.322074 1.915516303 -0.024692 73 86 SH15682 15682 YBR191W_2_606228_607098_INTRON_12_399 intron 22.680907 102.571739 22.680907 80.890832 51.7858695 1.714211273 -0.024718 46 32 SH13770 13770 MT COB intronic 23.073323 105.796168 23.073323 83.722845 53.398084 1.727525674 -0.02473 183 92 SH6208 6208 snR40 3' 22.507296 79.712902 51.110099 1.708506722 -0.024734 62 52 SH584 584 Gln1 5' flank 24.898076 97.378929 61.1385025 1.786314797 -0.024736 140 19 SH14352 14352 MT ORF9 and ORF10 (hypothetical) 5' 24.857456 120.926696 24.857456 97.06924 60.963348 1.78506881 -0.024751 146 18 SH13002 13002 MT COX1 COX1ai2 22.678634 102.559631 22.678634 80.880997 51.7798155 1.714160499 -0.024787 102 84 SH5993 5993 snR36 3' 25.605872 101.228332 63.417102 1.802206392 -0.024806 110 87 SH21068 21068 YMR225C spliced 23.223521 84.833993 54.028757 1.732624976 -0.024813 206 25 SH15943 15943 YDL125C_4_239605_239018_INTRON_98_208 exon/intron 24.924589 121.515548 24.924589 97.590959 61.257774 1.787161211 -0.024823 94 91 SH11633 11633 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5051 5066 1570.413656 2168.587851 1869.500754 3.271725645 -0.024834 86 65 SH9778 9778 RUF4 RUF4 666 681 26.687125 106.552016 66.6195705 1.823601828 -0.024841 209 51 SH6844 6844 snR52 3' 28.429772 110.196333 69.3130525 1.840815025 -0.024848 40 71 SH6168 6168 snR40 5' 23.113148 84.026918 53.570033 1.728921914 -0.024868 82 43 SH4613 4613 snR3 5' 25.547372 100.942573 63.2449725 1.801026008 -0.024888 72 95 SH3841 3841 RNaseP RNaseP 171 185 58.559017 154.599241 106.579129 2.027672167 -0.024901 163 36 SH14119 14119 MT COB intronic 26.332406 130.212551 26.332406 104.880145 65.6062755 1.816945383 -0.024905 54 60 SH12841 12841 MT COX1 COX1ai1 22.789156 103.466737 22.789156 81.677581 52.2333685 1.717948034 -0.025001 43 48 SH20716 20716 YJL041W spliced 26.590064 106.187 66.388532 1.822093066 -0.025002 122 87 SH13372 13372 MT COX1 intronic 23.663333 110.790776 23.663333 88.127443 55.895388 1.747375975 -0.02502 20 56 SH21579 21579 copy of SH5868 30.253412 113.392367 71.8228895 1.856262873 -0.025038 135 89 SH10656 10656 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 166 183 279.092521 474.094341 376.593431 2.57587274 -0.025038 81 11 SH20680 20680 YIL111W spliced 25.818978 102.314281 64.0666295 1.806631877 -0.025055 87 83 SH8362 8362 snoRNA cluster4 3' 23.988434 113.546554 23.988434 90.55812 57.273277 1.757952033 -0.025065 86 38 SH13996 13996 MT COB intronic 22.014004 97.448079 22.014004 76.434075 49.2240395 1.692177251 -0.02508 61 50 SH12073 12073 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7251 7268 25.035344 98.407996 61.72167 1.790437668 -0.025091 69 8 SH21925 21925 copy of SH20400 23.293114 85.37361 54.333362 1.735066579 -0.025101 93 29 SH19664 19664 SIR1 2.4 22.723273 81.211807 51.96754 1.715732159 -0.025108 74 22 SH17163 17163 YHR016C_8_138446_136872_INTRON_48_215 intron 27.254838 134.022965 27.254838 107.768127 67.5114825 1.829377645 -0.02514 37 59 SH16379 16379 YER007C-A_5_166884_166236_INTRON_12_114 5' exon 1480.249154 3536.793424 1480.249154 2057.54427 1768.896712 3.247702475 -0.025163 176 2 SH18061 18061 YLR333C_12_796335_795573_INTRON_1_423 3' exon 25.876556 127.488291 25.876556 102.611735 64.2441455 1.807833557 -0.025167 95 47 SH7602 7602 snR189 snR189 81 98 28.128456 109.592866 68.860661 1.837971187 -0.025174 124 87 SH17720 17720 YKL081W_11_282533_284097_INTRON_206_531 3' exon 28.702467 138.479148 28.702467 110.776681 69.739574 1.84347929 -0.025184 114 6 SH9870 9870 RUF5-1 RUF5-1 156 172 29.393657 112.116984 70.7553205 1.849759103 -0.0252 90 33 SH12593 12593 MT_15S MT_15S 22.63512 102.256374 22.63512 80.621254 51.628187 1.712886874 -0.025237 91 32 SH8662 8662 LSR1 / U2 RNA 5' 22.707829 81.117603 51.912716 1.715273751 -0.025245 124 31 SH16863 16863 YGL187C_7_150529_149708_INTRON_1_342 intron 34.439709 152.924238 34.439709 119.484529 76.962119 1.886277017 -0.025246 99 37 SH14797 14797 "MT tRNAs (Lys, Arg1, Gly)" tRNA Lys 31.738213 146.311113 31.738213 115.5729 73.6555565 1.867205515 -0.025285 192 36 SH9480 9480 RUF2 RUF2 241 260 24.21747 92.28236 58.249915 1.765295296 -0.025294 167 63 SH2174 2174 Met2 tRNA 1 13 24.246654 92.502813 58.3747335 1.766224911 -0.025319 106 97 SH13176 13176 MT COX1 Exon4 24.561686 118.437804 24.561686 94.876118 59.718902 1.776111814 -0.025347 147 100 SH14331 14331 MT VAR1 includes 5’ processing site VAR1 26.306226 130.091854 26.306226 104.785628 65.545927 1.81654571 -0.025358 210 74 SH16119 16119 YDR064W_4_579453_580447_INTRON_22_560 intron 24.113791 114.630324 24.113791 91.516533 57.815162 1.762041747 -0.025369 136 86 SH17028 17028 YGR183C_7_859471_859058_INTRON_4_216 5' exon 23.47573 109.230794 23.47573 86.755064 55.115397 1.74127294 -0.025376 140 63 SH16123 16123 YDR064W_4_579453_580447_INTRON_22_560 intron 28.478643 137.806549 28.478643 110.327906 69.4032745 1.841379961 -0.025376 132 49 SH19290 19290 YPL175W_16_218629_220087_INTRON_18_117 intron 27.536521 134.909611 27.536521 108.37309 67.9548055 1.832220174 -0.025388 155 52 SH7252 7252 snR65 snR65 36 53 28.754365 110.895456 69.8249105 1.844010388 -0.025393 71 14 SH3949 3949 RNase MRP RNaseMRP 161 173 58.406474 154.416246 106.41136 2.026987994 -0.02541 106 82 SH1626 1626 Leu5 5' flank - tRNA12 12 305.343631 512.106373 408.725002 2.611431205 -0.025413 84 56 SH4614 4614 snR3 5' - 3 3 28.36555 110.097626 69.231588 1.840304293 -0.025425 78 41 SH19252 19252 YPL129W_16_305297_306136_INTRON_10_114 intron 23.61423 110.410588 23.61423 87.796358 55.705294 1.745896471 -0.02543 200 45 SH6114 6114 snR39B 5' 24.466669 94.167151 59.31691 1.773178519 -0.025441 36 19 SH20095 20095 YDL029W spliced 26.360669 105.066942 65.7138055 1.817656618 -0.025445 110 56 SH12585 12585 MT_15S MT_15S 21.274044 91.949332 21.274044 71.675288 46.474666 1.667216277 -0.025454 196 60 SH21021 21021 YMR079W spliced 28.421995 110.216007 69.319001 1.840852295 -0.025459 19 78 SH11132 11132 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2546 2563 399.60293 646.221964 522.912447 2.71842898 -0.025462 202 92 SH6826 6826 snR52 snR52 36 55 33.906343 118.731401 76.318872 1.882631943 -0.02547 63 47 SH10296 10296 RUF7 RUF7 91 113 25.078088 98.650674 61.864381 1.791440672 -0.025482 207 57 SH21488 21488 copy of SH1854 1751.58125 2390.686962 2071.134106 3.31620822 -0.02549 66 71 SH15215 15215 MT COX3 cox3 23.582933 110.154611 23.582933 87.571678 55.5773055 1.744897487 -0.02554 162 27 SH3571 3571 Tyr2 3' flank 26.8663 106.971736 66.919018 1.825549559 -0.025546 194 100 SH15526 15526 YBR048W_2_332790_333771_INTRON_46_556 intron 23.103318 106.118659 23.103318 84.015341 53.5593295 1.728835132 -0.025557 90 84 SH20982 20982 YML056C spliced 26.09717 103.752182 64.924676 1.812409791 -0.025578 139 70 SH17615 17615 YJR021C_10_469271_468247_INTRON_317_396 intron 21.844924 96.199364 21.844924 75.35444 48.599682 1.686633428 -0.025585 92 94 SH2747 2747 Pro5 3' flank 24.079257 91.280315 57.679786 1.76102364 -0.025588 24 22 SH13800 13800 MT COB intronic 23.876317 112.655264 23.876317 89.778947 56.827632 1.754559559 -0.025593 71 66 SH7829 7829 snoRNA cluster1 intergenic 25.829668 127.244326 25.829668 102.414658 64.122163 1.807008164 -0.025638 153 85 SH14041 14041 MT COB Cytbi4 25.675934 126.32189 25.675934 101.645956 63.660945 1.803873081 -0.025652 72 92 SH10059 10059 RUF6 RUF6 141 163 24.621453 95.360332 59.9908925 1.778085323 -0.025665 53 50 SH9511 9511 RUF3 5' 22.119609 77.182216 49.6509125 1.695927235 -0.025669 63 88 SH20236 20236 YDR305C spliced 23.751116 88.849512 56.300314 1.750510817 -0.025675 195 64 SH12285 12285 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.644563 126.135492 25.644563 101.490929 63.567746 1.803236812 -0.025676 136 37 SH20016 20016 YBR084C-A spliced 25.820343 102.371651 64.095997 1.806830907 -0.025685 64 23 SH7624 7624 snR189 3' 22.57115 80.228197 51.3996735 1.71096036 -0.025754 126 53 SH6845 6845 snR52 3' 31.482429 115.230327 73.356378 1.86543788 -0.025757 70 37 SH3815 3815 RNaseP RNaseP 41 53 28.902242 111.222611 70.0624265 1.845485174 -0.025806 197 43 SH12025 12025 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7011 7031 24.319295 93.093467 58.706381 1.768685309 -0.025807 116 83 SH21267 21267 YPL081W spliced 31.477189 115.2265 73.3518445 1.865411039 -0.025825 210 56 SH11888 11888 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6326 6343 183.335813 336.67936 260.0075865 2.41498602 -0.025826 177 15 SH20746 20746 YJL205C-A spliced 24.807886 96.80287 60.805378 1.783941993 -0.025887 100 19 SH13212 13212 MT COX1 COX1-ai4 23.676422 110.986123 23.676422 88.309701 55.9930615 1.748134214 -0.025928 17 45 SH12145 12145 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7611 7628 25.431155 100.445744 62.9384495 1.79891604 -0.025944 209 11 SH5442 5442 snR31 3' 25.56182 101.098681 63.3302505 1.801611206 -0.025947 136 93 SH772 772 Gln4 3' flank 34.697343 119.893616 77.2954795 1.888154096 -0.025954 121 5 SH12680 12680 MT tRNA Trp tRNA 24.919401 121.586896 24.919401 97.667495 61.293448 1.787414053 -0.025985 92 84 SH14028 14028 MT COB Exon4 22.525828 101.466085 22.525828 79.940257 51.2330425 1.709550147 -0.025998 209 35 SH20529 20529 YGR118W spliced 32.811301 117.166163 74.988732 1.87499601 -0.025999 209 46 SH17994 17994 YLR287C-A_12_713158_712537_INTRON_4_433 intron 24.417503 117.270191 24.417503 93.852688 59.1350955 1.771845303 -0.026024 103 73 SH263 263 Arg4 5' flank 24.214705 92.331582 58.2731435 1.765468446 -0.026032 124 10 SH556 556 Cys1 3' flank 22.980519 83.157852 53.0691855 1.724842422 -0.026034 149 62 SH12720 12720 MT COX1 5' 22.904649 104.516732 22.904649 82.612083 52.758366 1.722291336 -0.026121 196 26 SH10453 10453 RUF8 RUF8 191 210 26.206571 104.346783 65.276677 1.814758038 -0.026123 185 18 SH9099 9099 snR14 / U4 RNA U4 111 128 23.402879 86.285168 54.8440235 1.739129308 -0.026181 2 14 SH10388 10388 RUF7 3' 27.058081 107.415146 67.2366135 1.827605831 -0.026215 18 16 SH4563 4563 U3b (snR17b) U3b 371 387 61.819509 159.471033 110.645271 2.043932857 -0.026217 192 44 SH10108 10108 RUF6 RUF6 386 405 28.486191 110.393334 69.4397625 1.841608227 -0.026228 202 52 SH8294 8294 snoRNA cluster4 intergenic 24.25928 115.943316 24.25928 92.684036 58.471658 1.766945409 -0.026232 188 50 SH16749 16749 YGL076C_7_365994_364333_INTRON_565_1032 intron 23.631299 110.631201 23.631299 87.999902 55.8156005 1.746755602 -0.026249 42 25 SH20025 20025 YBR119W spliced 25.554973 101.089417 63.322195 1.801555961 -0.026262 55 29 SH8176 8176 snoRNA cluster 3; snR70 65.575411 229.540877 65.575411 164.965466 115.2704385 2.061717945 -0.026266 22 65 SH20737 20737 YJL191W spliced 28.479105 110.383896 69.4315005 1.841556551 -0.026316 106 104 SH21363 21363 Ile2_3 spliced 29.459301 112.276495 70.867898 1.850449551 -0.026317 173 82 SH6633 6633 snR48 5' - 8 -9 8 24.158918 91.942477 58.0506975 1.763807442 -0.026322 99 50 SH18953 18953 YOL127W_15_80347_81189_INTRON_14_427 intron 26.296713 130.117415 26.296713 104.820702 65.5587075 1.816630383 -0.026367 42 62 SH16176 16176 YDR305C_4_1073479_1072737_INTRON_88_176 intron 29.784966 141.55322 29.784966 112.768254 71.27661 1.852947036 -0.026373 170 56 SH19120 19120 YPL031C_16_493033_492014_INTRON_18_119 intron 26.543231 131.609192 26.543231 106.065961 66.304596 1.821543633 -0.026388 83 53 SH10326 10326 RUF7 RUF7 241 255 31.897616 115.864193 73.8809045 1.868532204 -0.026398 205 93 SH18420 18420 YMR133W_13_536206_537608_INTRON_1243_1358 intron 26.052232 128.646592 26.052232 103.59436 64.823296 1.811731109 -0.026414 91 74 SH13239 13239 MT COX1 COX1-ai4 22.982128 105.185427 22.982128 83.203299 53.0927135 1.725034922 -0.026421 114 27 SH109 109 Arg1 5' flank 22.708799 81.220995 51.964897 1.715710071 -0.026427 192 45 SH7557 7557 snR79 3' 24.079998 91.365657 57.7228275 1.761347596 -0.02644 158 56 SH5338 5338 snR30 snR30 541 560 24.650134 95.654318 60.152226 1.779251704 -0.026441 21 22 SH2031 2031 Lys3 3' flank 24.249547 92.631184 58.4403655 1.766712923 -0.026442 162 58 SH10335 10335 RUF7 RUF7 286 302 34.908842 120.223104 77.565973 1.889671245 -0.026444 123 17 SH18774 18774 YNL265C_14_145280_144279_INTRON_28_132 5' exon 26.647906 132.207512 26.647906 106.559606 66.603756 1.823498721 -0.026448 186 67 SH11171 11171 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2741 2757 1049.592128 1513.094187 1281.343158 3.107665454 -0.026472 178 90 SH6961 6961 snR58 3' 23.2626 85.270998 54.266799 1.734534205 -0.02648 133 40 SH8659 8659 LSR1 / U2 RNA 5' 23.427775 86.498596 54.9631855 1.740071895 -0.026491 175 104 SH17487 17487 YJL024C_10_396288_395627_INTRON_23_99 intron 24.303729 116.34576 24.303729 93.042031 58.67288 1.768437406 -0.026492 77 19 SH17077 17077 YGR225W_7_945138_946919_INTRON_1184_1276 intron 23.781647 111.940623 23.781647 89.158976 56.4703115 1.751820183 -0.02652 174 47 SH14416 14416 MT 21S rRNA 21S rRNA3 31.034609 144.658283 31.034609 114.623674 72.8291415 1.862305191 -0.026546 136 70 SH142 142 Arg1 3' flank 31.056355 114.656151 72.856253 1.862466832 -0.026559 10 5 SH7505 7505 snR71 3' 22.678914 81.027999 51.8534565 1.714777711 -0.026563 3 58 SH14944 14944 MT tRNA Met 5' 23.095276 106.140749 23.095276 84.045473 53.5703745 1.728924682 -0.026572 78 26 SH10065 10065 RUF6 RUF6 171 188 26.890022 107.080793 66.9854075 1.825980204 -0.026582 122 70 SH1214 1214 Ile1 tRNA 31 45 34.520657 119.67839 77.0995235 1.887051694 -0.026582 4 82 SH14729 14729 MT tRNA cys; tRNA his intergenic / tRNA his 23.089454 106.093283 23.089454 84.003829 53.5466415 1.728732237 -0.026584 51 7 SH3248 3248 Thr1 3' flank 27.407243 108.171174 67.7892085 1.831160563 -0.026588 131 19 SH15966 15966 YDL130W_4_229906_230527_INTRON_115_415 intron 31.742162 146.39449 31.742162 115.652328 73.697245 1.867451253 -0.026605 45 61 SH2951 2951 Ser1 5' flank - tRNA5 5 27.256581 107.85801 67.5572955 1.829672255 -0.026646 187 12 SH15912 15912 YDL083C_4_307788_306925_INTRON_25_456 intron 25.044339 122.619633 25.044339 98.575294 61.8098165 1.791057454 -0.026677 106 35 SH17358 17358 YIL052C_9_257061_256224_INTRON_38_509 intron 21.429866 93.179694 21.429866 72.749828 47.089847 1.672927279 -0.026693 110 43 SH8968 8968 snR17a / U3a U3a 126 145 23.503401 87.082051 55.292726 1.742668002 -0.026699 3 94 SH14919 14919 MT tRNA Tyr tRNA / 3' 37.392718 160.291636 37.392718 123.898918 80.645818 1.906581851 -0.026702 176 57 SH6449 6449 snR45 snR45 91 105 67.922932 168.439307 118.1811195 2.0725481 -0.026716 123 100 SH12608 12608 MT_15S MT_15S 36.927729 159.129258 36.927729 123.201529 80.064629 1.903440696 -0.02672 80 8 SH6115 6115 snR39B 5' 23.530171 87.286786 55.4084785 1.743576225 -0.026747 38 20 SH13810 13810 MT COB Cytbi2 24.679077 119.589782 24.679077 95.910705 60.294891 1.780280514 -0.026808 172 81 SH14219 14219 MT ATP9 ATP9 24.265737 116.054297 24.265737 92.78856 58.5271485 1.767357365 -0.026822 92 78 SH21500 21500 copy of SH2550 26.599907 106.389895 66.494901 1.822788344 -0.026839 169 56 SH1301 1301 Ile2 3' flank 22.424327 79.321122 50.8727245 1.706484997 -0.026846 69 66 SH10781 10781 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 791 809 25.751888 102.124247 63.9380675 1.805759506 -0.026877 89 29 SH6775 6775 snR50 snR50 51 70 33.045632 117.560799 75.3032155 1.876813521 -0.026877 72 30 SH20201 20201 YDR025W spliced 30.927442 114.487061 72.7072515 1.861577728 -0.026905 207 26 SH17627 17627 YJR094W-A_10_608000_608553_INTRON_3_277 intron 24.945225 121.904 24.945225 97.958775 61.452 1.788536022 -0.026908 202 100 SH13041 13041 MT COX1 COX1ai2 24.444532 117.587818 24.444532 94.143286 59.293909 1.773010083 -0.026924 60 15 SH10659 10659 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 181 196 35.094595 120.515042 77.8048185 1.891006494 -0.026931 162 88 SH1800 1800 Leu8 tRNA-exon/intron 26 41 136.030032 268.562655 202.2963435 2.305988033 -0.026949 132 12 SH18174 18174 YLR448W_12_1028848_1029762_INTRON_16_399 intron 23.950195 113.401567 23.950195 90.451372 57.2007835 1.757401978 -0.026964 98 93 SH9479 9479 RUF2 RUF2 236 254 25.472467 100.732755 63.102611 1.800047329 -0.026966 51 63 SH21783 21783 copy of SH14233 23.277338 85.431317 54.3543275 1.735234127 -0.027054 149 90 SH7413 7413 snR69 5' 23.083188 83.999764 53.541476 1.728690339 -0.027062 96 76 SH10533 10533 RUF8 RUF8 591 612 22.788929 81.852596 52.3207625 1.718674065 -0.027066 149 91 SH5465 5465 snR32 5' - 3 -14 3 27.240651 107.848839 67.544745 1.829591566 -0.027072 49 29 SH15676 15676 YBR191W_2_606228_607098_INTRON_12_399 intron 37.477421 160.526993 37.477421 124.049572 80.7634965 1.907215113 -0.027086 107 62 SH4215 4215 telomerase RNA telomerase 111 127 24.955282 98.05426 61.504771 1.788908806 -0.027088 128 3 SH15287 15287 MT 9S rRNA 9S 28.948332 139.342193 28.948332 111.393861 70.1710965 1.846158263 -0.027109 212 104 SH972 972 Gly1 3' flank 25.388436 100.324294 62.856365 1.798349262 -0.02711 122 12 SH9357 9357 RUF1 RUF1 361 382 24.827974 97.079373 60.9536735 1.784999884 -0.02712 133 61 SH2654 2654 Pro4 5' flank 24.46723 94.335097 59.4011635 1.773794952 -0.027134 51 98 SH13006 13006 MT COX1 COX1ai2 33.751692 151.356954 33.751692 118.605262 76.178477 1.881832286 -0.027147 23 94 SH11651 11651 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5141 5154 30.597569 114.01658 72.3070745 1.859180791 -0.02715 202 27 SH11590 11590 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4836 4851 32.62126 116.952344 74.786802 1.873824963 -0.027158 139 96 SH773 773 Gln4 3' flank 24.52033 94.743593 59.6319615 1.775479095 -0.027204 167 23 SH9194 9194 snR7 U5 RNA 3' 23.878713 89.94776 56.9132365 1.755213283 -0.027233 199 85 SH11620 11620 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4986 5003 541.880606 843.603406 692.742006 2.840571523 -0.027304 61 29 SH15612 15612 YBR181C_2_592732_591670_INTRON_7_358 5' exon 77.938178 260.228483 77.938178 183.290305 130.6142415 2.115990533 -0.027321 49 73 SH15780 15780 YDL012C_4_431513_431104_INTRON_46_131 3' exon 25.247903 123.889569 25.247903 99.641666 62.4447845 1.795496171 -0.02735 85 88 SH20962 20962 YML025C spliced 23.89554 90.087051 56.9912955 1.755808529 -0.027395 128 28 SH17658 17658 YKL002W_11_437416_438182_INTRON_61_128 intron 23.192574 107.027543 23.192574 84.834969 54.0137715 1.732504503 -0.027397 133 90 SH17695 17695 YKL006W_11_431544_432358_INTRON_130_527 intron 22.673047 102.730029 22.673047 81.056982 51.8650145 1.714874504 -0.027408 31 91 SH16928 16928 YGR001C_7_498029_497128_INTRON_36_97 intron 25.125035 123.159537 25.125035 99.034502 62.0797685 1.792950089 -0.027419 69 97 SH21348 21348 YPR132W spliced 31.182043 114.887056 73.0345495 1.863528355 -0.02742 170 30 SH6285 6285 snR42 snR42 206 224 24.876842 97.487481 61.1821615 1.786624816 -0.027452 13 55 SH7232 7232 snR65 5' 22.815275 82.076942 52.4461085 1.719713269 -0.027453 80 36 SH15242 15242 MT tRNA fMet 5' 23.827644 112.419755 23.827644 89.592111 56.7098775 1.753658709 -0.027462 109 26 SH7514 7514 snR79 5' 48.100512 139.64197 93.871241 1.972532559 -0.027467 55 11 SH8090 8090 snoRNA cluster 2 3' 27.378311 134.539487 27.378311 108.161176 67.7697435 1.831035842 -0.027472 170 50 SH14885 14885 MT tRNA Ala 3' 22.487781 101.288801 22.487781 79.80102 51.1444005 1.708798092 -0.027472 46 31 SH3106 3106 Ser4 5' flank 26.289749 104.877494 65.5836215 1.816795395 -0.027484 21 24 SH19319 19319 YPL198W_16_173151_174701_INTRON_12_420 intron/exon 22.130612 98.529687 22.130612 77.399075 49.7648435 1.696922643 -0.027508 135 5 SH13383 13383 MT COX1 Exon 5b 22.445073 100.959611 22.445073 79.514538 50.9798055 1.707398174 -0.027508 190 36 SH21633 21633 copy of SH7933 26.476846 105.823771 66.1503085 1.820531874 -0.027509 34 21 SH19760 19760 Negative Control 26.231152 104.584448 65.4078 1.815629542 -0.027512 81 12 SH15629 15629 YBR181C_2_592732_591670_INTRON_7_358 intron 25.868371 127.62807 25.868371 102.759699 64.314035 1.808305758 -0.027513 113 59 SH20435 20435 YGL076C spliced 61.556912 159.20405 110.380481 2.042892282 -0.027523 47 9 SH16016 16016 YDL137W_4_216158_217074_INTRON_1_332 3' exon 24.791901 120.635515 24.791901 96.843614 60.8177575 1.784030403 -0.027528 61 74 SH7320 7320 snR66 3' 21.366091 72.407916 46.8870035 1.671052478 -0.02756 177 104 SH6519 6519 snR46 snR46 86 103 43.159695 132.443149 87.801422 1.94350155 -0.027582 182 7 SH12136 12136 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7566 7579 56.890905 152.41495 104.6529275 2.019751382 -0.027605 185 34 SH5550 5550 snR33 snR33 36 60 24.203972 92.400756 58.302364 1.765686165 -0.027609 146 46 SH2367 2367 Phe3 3' flank 28.538499 110.586831 69.562665 1.842376212 -0.02769 196 43 SH3344 3344 Thr3 66-72 + 3' flank 66 24.2553 92.795328 58.525314 1.767343752 -0.027715 86 94 SH14984 14984 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 21.957923 97.222914 21.957923 76.264991 49.111457 1.691182819 -0.027717 194 30 SH7539 7539 snR79 snR79 36 52 30.964332 114.58707 72.775701 1.861986397 -0.027737 34 91 SH57 57 Ala2 5' flank 24.808425 96.99126 60.8998425 1.784616169 -0.02774 169 7 SH18930 18930 YOL121C_15_92849_92025_INTRON_21_410 intron 102.018662 320.134264 102.018662 219.115602 160.567132 2.20565665 -0.027757 163 4 SH403 403 Asn1 3' flank 22.600803 80.593342 51.5970725 1.712625061 -0.027768 59 63 SH12640 12640 MT_15S MT_15S 217.448246 602.520258 217.448246 386.072012 301.760129 2.479661857 -0.027781 65 2 SH20339 20339 YER074W-A spliced 24.209545 92.459255 58.3344 1.765924735 -0.027786 57 53 SH5077 5077 snR11 5' - 7 -14 7 99.22176 214.942884 157.082322 2.196127312 -0.027789 150 46 SH12782 12782 MT COX1 COX1ai1 26.862 132.952947 26.862 107.090947 66.9764735 1.825922277 -0.027804 52 9 SH12538 12538 MT_ORF6 + ORF7 (hypothetical) ORF6/7 27.246732 134.155339 27.246732 107.908607 67.5776695 1.829803211 -0.027892 124 82 SH9936 9936 RUF5-1 RUF5-1 486 503 27.069272 107.535237 67.3022545 1.828029613 -0.027906 89 77 SH8582 8582 snR19 / U1 RNA U1 406 418 226.764324 399.502377 313.1333505 2.495729325 -0.027912 8 27 SH14996 14996 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 23.853615 112.682086 23.853615 89.828471 56.841043 1.754662038 -0.027948 86 2 SH2993 2993 Ser2 5' flank 23.595323 87.88903 55.7421765 1.746183922 -0.027984 9 82 SH20254 20254 YDR381W spliced 28.811913 111.166842 69.9893775 1.845032131 -0.027996 114 52 SH15928 15928 YDL108W_4_267697_268698_INTRON_29_109 intron 24.455929 117.791609 24.455929 94.33568 59.3958045 1.773755769 -0.028023 209 53 SH6018 6018 snR37 snR37 6 23 28.344319 110.205938 69.2751285 1.84057734 -0.028027 28 74 SH12691 12691 MT ORF 8 (hypothetical) 5' 23.232541 107.419163 23.232541 85.186622 54.2095815 1.734076055 -0.028029 184 28 SH20770 20770 YKL002W spliced 28.17675 109.859249 69.0179995 1.838962367 -0.02803 173 42 SH2474 2474 Phe5 3' flank 24.946608 98.08399 61.515299 1.788983139 -0.028048 43 25 SH14132 14132 MT COB intronic 23.386757 108.721125 23.386757 86.334368 54.8605625 1.739260256 -0.028056 117 40 SH812 812 Glu1 3' flank 22.010923 76.64359 49.3272565 1.693086961 -0.028058 211 99 SH270 270 Arg4 5' flank 24.122028 91.832657 57.9773425 1.763258305 -0.028077 81 10 SH13565 13565 MT COX1 Exon 6 23.763523 111.931203 23.763523 89.16768 56.4656015 1.751783959 -0.028084 83 81 SH21455 21455 copy of SH464 44.529176 134.493402 89.511289 1.951877811 -0.028101 71 69 SH13032 13032 MT COX1 COX1ai2 22.014779 97.688556 22.014779 76.673777 49.344278 1.693236799 -0.028117 41 77 SH3422 3422 Trp1 5' flank 22.700406 81.302853 52.0016295 1.716016953 -0.028126 120 85 SH5920 5920 snR36 snR36 56 73 24.294698 93.132833 58.7137655 1.768739934 -0.028153 10 86 SH7736 7736 snoRNA cluster1 intergenic 26.880268 133.029874 26.880268 107.149606 67.014937 1.826171614 -0.028155 53 82 SH17902 17902 YLR061W_12_263195_263949_INTRON_13_401 intron 24.839132 121.108049 24.839132 97.268917 61.0540245 1.785714297 -0.028163 10 38 SH6948 6948 snR58 3' 25.46736 100.802339 63.1348495 1.80026915 -0.028169 105 37 SH7555 7555 snR79 3' 25.558496 101.260001 63.4092485 1.802152606 -0.028188 24 16 SH15048 15048 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.419669 100.818033 22.419669 79.398364 50.9090165 1.706794707 -0.028204 171 91 SH21322 21322 YPR028W spliced 42.556052 131.614637 87.0853445 1.939945074 -0.028215 153 40 SH5999 5999 snR37 5' 33.632119 118.494769 76.063444 1.881175986 -0.028232 202 74 SH21183 21183 YOL047C spliced 24.91903 97.893595 61.4063125 1.788213018 -0.028267 97 16 SH9333 9333 RUF1 RUF1 241 260 22.00591 76.62912 49.317515 1.693001185 -0.028303 52 58 SH1516 1516 Leu3 tRNA-intron 51 65 25.60771 101.518016 63.562863 1.80320345 -0.028333 191 14 SH16916 16916 YGL251C_7_31636_27921_INTRON_59_210 intron 26.10861 129.142875 26.10861 104.034265 65.0714375 1.813390401 -0.028333 136 54 SH8788 8788 LSR1 / U2 RNA U2 581 598 42.620701 131.716723 87.168712 1.940360629 -0.028341 73 54 SH12196 12196 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7866 7886 23.465102 86.945936 55.205519 1.741982497 -0.02835 26 38 SH12778 12778 MT COX1 COX1ai1 23.156873 106.813249 23.156873 84.656376 53.9066245 1.731642138 -0.028355 140 80 SH7710 7710 snoRNA cluster1 snR77 63.813347 225.355745 63.813347 162.542398 113.1778725 2.053761526 -0.028358 80 27 SH1841 1841 Leu9 5' flank 25.899844 102.98847 64.444157 1.809183547 -0.028389 84 48 SH9624 9624 RUF3 3' 25.502023 100.993471 63.247747 1.80104506 -0.028392 185 39 SH14154 14154 MT COB intronic 24.003759 113.988574 24.003759 90.984815 57.494287 1.759624693 -0.028427 72 8 SH7956 7956 snoRNA cluster 2 5' 22.946612 105.065766 22.946612 83.119154 53.032883 1.724545237 -0.028438 146 91 SH16215 16215 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 32.581651 148.548878 32.581651 116.967227 74.774439 1.873753163 -0.028442 91 29 SH7837 7837 snoRNA cluster1 snR74 29.037574 139.693322 29.037574 111.655748 70.346661 1.847243488 -0.02845 142 82 SH21518 21518 copy of SH3113 22.539691 80.234312 51.3870015 1.710853277 -0.028471 145 5 SH8354 8354 snoRNA cluster4 3' 30.38309 143.157538 30.38309 113.774448 72.078769 1.857807361 -0.028501 175 23 SH16235 16235 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 24.400129 117.360429 24.400129 93.9603 59.1802145 1.772176535 -0.028501 24 104 SH14152 14152 MT COB intronic 24.748346 120.35577 24.748346 96.607424 60.677885 1.783030435 -0.028508 160 24 SH10980 10980 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1786 1804 27823.85898 27204.71135 27514.28517 4.439558234 -0.02853 117 72 SH17191 17191 YHR021C_8_148660_147862_INTRON_4_553 intron 39.773872 166.30677 39.773872 127.532898 83.653385 1.922483519 -0.028537 77 90 SH15528 15528 YBR048W_2_332790_333771_INTRON_46_556 intron 24.43333 117.65034 24.43333 94.21701 59.32517 1.773238991 -0.028563 138 85 SH15691 15691 YBR191W_2_606228_607098_INTRON_12_399 3' exon 23.757937 111.932654 23.757937 89.174717 56.466327 1.751789539 -0.028613 169 24 SH13126 13126 MT COX1 COX1ai3 24.012403 114.07918 24.012403 91.066777 57.53959 1.759966763 -0.028617 74 41 SH13856 13856 MT COB Cytbi2 23.53795 110.054708 23.53795 87.516758 55.527354 1.744506979 -0.028624 100 6 SH7907 7907 snoRNA cluster1 intergenic 23.789229 112.203902 23.789229 89.414673 56.601951 1.752831401 -0.028642 44 40 SH12750 12750 MT COX1 COX1ai1 22.907255 104.756667 22.907255 82.849412 52.8783335 1.72327776 -0.028644 97 14 SH10283 10283 RUF7 RUF7 26 42 37.383228 124.006305 80.6947665 1.906845369 -0.028652 154 62 SH5793 5793 snR35 snR35 151 172 22.811117 82.150037 52.480577 1.719998601 -0.028655 63 102 SH19868 19868 Negative Control 26.023672 103.633118 64.828395 1.81176527 -0.028658 16 80 SH3442 3442 Trp1 tRNA 41 57 24.384284 93.856327 59.1203055 1.77173667 -0.028663 185 64 SH13640 13640 MT ATP6 ATP6 21.956477 97.28534 21.956477 76.328863 49.14267 1.691458749 -0.028671 92 103 SH16184 16184 YDR367W_4_1212837_1213603_INTRON_31_131 intron 23.854787 112.762892 23.854787 89.908105 56.881446 1.754970628 -0.028718 23 88 SH8229 8229 snoRNA cluster 3; 3' 24.812714 120.936323 24.812714 97.123609 60.9681615 1.785103099 -0.028739 84 104 SH16304 16304 YDR450W_4_1359912_1360787_INTRON_48_482 intron 35.486939 155.6635 35.486939 121.176561 78.33175 1.893937829 -0.028754 104 24 SH17640 17640 YJR145C_10_702761_701720_INTRON_15_270 exon/intron 32.847652 149.226561 32.847652 117.378909 75.1132805 1.87571673 -0.028773 3 51 SH17401 17401 YIL069C_9_232366_231550_INTRON_4_412 intron 23.909917 113.231086 23.909917 90.321169 57.115543 1.75675431 -0.028776 61 30 SH15880 15880 YDL082W_4_308423_309387_INTRON_5_369 intron 26.733195 132.606134 26.733195 106.872939 66.803067 1.824796402 -0.028779 178 86 SH14649 14649 MT 21S rRNA intronic / 21S rRNA4 60.445845 217.143498 60.445845 157.697653 109.071749 2.037712277 -0.028788 201 45 SH20799 20799 YKL157W spliced 28.983496 111.566228 70.274862 1.846800001 -0.028806 98 46 SH14291 14291 MT VAR1 includes 5’ processing site VAR1 24.22685 115.913521 24.22685 92.686671 58.4567605 1.766834744 -0.028815 168 81 SH13061 13061 MT COX1 intronic 23.550155 110.177738 23.550155 87.627583 55.588869 1.744987838 -0.028833 38 18 SH17682 17682 YKL006W_11_431544_432358_INTRON_130_527 intron 26.448458 131.240297 26.448458 105.791839 66.1201485 1.82033382 -0.028852 177 51 SH8210 8210 snoRNA cluster 3; snR51 37.302714 160.200819 37.302714 123.898105 80.6004095 1.906337248 -0.028853 50 59 SH21876 21876 copy of SH18251 22.085453 77.211964 49.6487085 1.695907956 -0.028978 48 53 SH14032 14032 MT COB Cytbi4 22.72617 103.287432 22.72617 81.561262 52.143716 1.717201978 -0.028979 209 3 SH9249 9249 snR6 / U6 RNA 3' 23.725581 88.96451 56.3450455 1.750855734 -0.028987 139 35 SH7619 7619 snR189 snR189 166 181 26.577706 106.45727 66.517488 1.82293584 -0.028991 74 67 SH6507 6507 snR46 snR46 26 43 24.029994 91.233802 57.631898 1.760662923 -0.029004 166 33 SH878 878 Glu3 5' flank 37.158047 123.690419 80.424233 1.905386928 -0.029008 106 34 SH9300 9300 RUF1 RUF1 76 92 27.263621 108.008169 67.635895 1.830177241 -0.029009 51 44 SH14324 14324 MT VAR1 includes 5’ processing site VAR1 22.454179 101.151826 22.454179 79.697647 51.075913 1.708216139 -0.02902 75 34 SH17474 17474 YJL001W_10_434855_435618_INTRON_66_181 intron 27.585386 135.270087 27.585386 108.684701 68.1350435 1.833370538 -0.029022 161 65 SH17479 17479 YJL001W_10_434855_435618_INTRON_66_181 intron/exon 26.455553 131.29929 26.455553 105.843737 66.149645 1.820527518 -0.029045 196 25 SH9764 9764 RUF4 RUF4 596 617 26.115877 104.134008 65.1249425 1.813747353 -0.029106 23 79 SH15502 15502 YBR048W_2_332790_333771_INTRON_46_556 5' exon 26.82239 132.903982 26.82239 107.081592 66.951991 1.825763496 -0.029118 39 30 SH21594 21594 copy of SH6470 29.805971 112.949421 71.377696 1.853562525 -0.029118 147 37 SH20997 20997 YML085C spliced 23.264728 85.523564 54.394146 1.735552163 -0.029131 78 79 SH16100 16100 YDR059C_4_569765_569229_INTRON_48_137 intron 24.176196 115.514924 24.176196 92.338728 58.257462 1.765351561 -0.029148 8 41 SH14065 14065 MT COB Cytbi4 25.787719 127.27415 25.787719 102.486431 64.137075 1.80710915 -0.029149 55 82 SH13988 13988 MT COB intronic 24.597827 119.119646 24.597827 95.521819 60.059823 1.778584048 -0.029149 74 46 SH13723 13723 MT COB 5' 23.62273 110.826026 23.62273 88.203296 55.913013 1.747512896 -0.029156 133 36 SH4737 4737 snR4 3' 27.424861 108.35662 67.8907405 1.831810546 -0.029171 157 20 SH15067 15067 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.220698 115.895005 24.220698 92.674307 58.4475025 1.766765958 -0.029171 105 68 SH63 63 Ala2 5' flank 26.371127 105.429715 65.900421 1.818888189 -0.029199 207 22 SH15781 15781 YDL012C_4_431513_431104_INTRON_46_131 3' exon 34.200767 152.573895 34.200767 119.373128 76.7869475 1.885287403 -0.029203 40 35 SH9776 9776 RUF4 RUF4 656 671 264.145731 453.750068 358.9478995 2.555031416 -0.029207 43 102 SH21489 21489 copy of SH2037 25.352099 100.30858 62.8303395 1.798169406 -0.029218 172 39 SH5341 5341 snR30 snR30 556 572 24.983001 98.467581 61.725291 1.790463146 -0.029234 163 17 SH7568 7568 snR189 5' 21.970253 76.465873 49.218063 1.692124518 -0.029261 23 22 SH5248 5248 snR30 snR30 91 107 33.070887 117.735624 75.4032555 1.877390097 -0.02927 15 5 SH6868 6868 snR56 5' 57.324677 153.16925 105.2469635 2.022209575 -0.029287 195 20 SH7726 7726 snoRNA cluster1 intergenic 25.872236 127.79518 25.872236 102.922944 64.39759 1.808869615 -0.029295 25 6 SH10309 10309 RUF7 RUF7 156 168 29.597806 112.646829 71.1223175 1.8520059 -0.029296 184 14 SH15589 15589 YBR084C-A_2_415219_414144_INTRON_3_508 intron/exon 66.868726 233.009973 66.868726 167.141247 117.0049865 2.068204371 -0.029303 41 59 SH13707 13707 MT tRNAGlu (and 5' processing site for COB) tRNA 25.403836 124.97935 25.403836 100.575514 62.989675 1.799269368 -0.029321 149 84 SH21480 21480 copy of SH1653 25.455034 100.833772 63.144403 1.800334862 -0.029346 126 73 SH16721 16721 YGL033W_7_435621_436347_INTRON_56_125 5' exon 47.690043 185.875375 47.690043 139.185332 93.4376875 1.970522081 -0.029374 161 53 SH15141 15141 MT tRNA Thr1 reverse complement 5' 22.296871 99.95899 22.296871 78.662119 50.479495 1.703115002 -0.029374 161 8 SH18932 18932 YOL121C_15_92849_92025_INTRON_21_410 intron 22.795252 103.894027 22.795252 82.098775 52.4470135 1.719720763 -0.029401 187 36 SH805 805 Glu1 tRNA 41 53 3480.172947 4383.633772 3931.90336 3.594602835 -0.02941 179 10 SH20121 20121 YDL079C spliced 36.21793 122.291982 79.254956 1.899026429 -0.029419 34 98 SH14045 14045 MT COB Cytbi4 23.360798 108.626229 23.360798 86.265431 54.8131145 1.73888448 -0.029435 188 11 SH8910 8910 LSR1 / U2 RNA 3' 24.077838 91.631547 57.8546925 1.76233859 -0.029444 179 67 SH10060 10060 RUF6 RUF6 146 166 30.111677 113.42419 71.7679335 1.855930441 -0.029455 147 28 SH7172 7172 snR64 5' 38.428063 125.611531 82.019797 1.91391869 -0.029463 140 68 SH14107 14107 MT COB cytbi4/intronic 23.987875 113.952655 23.987875 90.96478 57.4763275 1.759489011 -0.029477 147 41 SH17206 17206 YHR039C-A_8_187670_187164_INTRON_4_165 intron 24.970102 122.380728 24.970102 98.410626 61.690364 1.790217333 -0.02949 137 57 SH3925 3925 RNase MRP RNaseMRP 41 62 22.353828 79.056197 50.7050125 1.705050894 -0.029495 154 96 SH18789 18789 YNL301C_14_64561_63569_INTRON_113_544 intron 27.449917 134.878022 27.449917 108.428105 67.939011 1.83211922 -0.029499 37 100 SH2800 2800 Pro6 91-102 + 3' flank 91 30.011142 113.279454 71.645298 1.855187693 -0.029547 213 64 SH6708 6708 snR49 snR49 66 82 24.040629 91.367647 57.704138 1.761206958 -0.029587 64 34 SH4608 4608 snR3 5' 22.593766 80.693649 51.6437075 1.713017413 -0.02959 164 8 SH3670 3670 Val2 3' flank 22.643426 81.033596 51.838511 1.714652518 -0.029598 144 31 SH7856 7856 snoRNA cluster1 intergenic 29.993797 142.251339 29.993797 113.257542 71.6256695 1.855068694 -0.029619 184 87 SH5694 5694 snR34 snR34 391 410 24.515789 94.944835 59.730312 1.776194783 -0.029626 105 58 SH13913 13913 MT COB Cytbi3 24.433197 117.752448 24.433197 94.319251 59.376224 1.773612575 -0.02963 105 5 SH20810 20810 YKL186C spliced 24.73552 96.621419 60.6784695 1.783034618 -0.029639 113 66 SH15775 15775 YDL012C_4_431513_431104_INTRON_46_131 exon/intron 27.44551 134.872808 27.44551 108.427298 67.936404 1.832102555 -0.029646 20 88 SH12043 12043 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7101 7118 343.317518 568.121401 455.7194595 2.658697574 -0.029648 204 104 SH21058 21058 YMR194W spliced 29.88163 113.092956 71.487293 1.854228852 -0.029673 36 90 SH4968 4968 snR9 3' 26.636844 106.71903 66.677937 1.823982154 -0.02968 83 91 SH13368 13368 MT COX1 intronic 23.883167 113.090279 23.883167 90.207112 57.0451395 1.756218647 -0.029683 120 83 SH10168 10168 RUF6 RUF6 686 700 50.739491 143.680347 97.209919 1.987710581 -0.029716 169 78 SH7621 7621 snR189 snR189 176 188 273.543592 467.497201 370.5203965 2.56881212 -0.029728 113 92 SH20720 20720 YJL136C spliced 23.350322 86.216633 54.7834775 1.738649597 -0.02976 135 87 SH19772 19772 Negative Control 23.259022 85.538266 54.398644 1.735588074 -0.029768 79 60 SH17911 17911 YLR061W_12_263195_263949_INTRON_13_401 intron 21.907666 96.996792 21.907666 76.089126 48.998396 1.690181863 -0.029769 33 32 SH16751 16751 YGL076C_7_365994_364333_INTRON_565_1032 intron 27.121319 133.873231 27.121319 107.751912 67.4366155 1.828895766 -0.029774 68 15 SH1313 1313 Ile3 5' flank 23.27789 85.681156 54.479523 1.736233296 -0.029799 184 52 SH3978 3978 RNase MRP RNaseMRP 306 323 22.999251 83.62413 53.3116905 1.726822454 -0.029807 109 57 SH20208 20208 YDR059C spliced 27.214039 107.949715 67.581877 1.82983025 -0.029812 201 3 SH5775 5775 snR35 snR35 61 77 70.835055 173.022848 121.9289515 2.086106839 -0.029834 36 7 SH21157 21157 YNL301C spliced 24.509668 94.919916 59.714792 1.776081924 -0.029847 191 46 SH8055 8055 snoRNA cluster 2 intergenic 24.036558 114.398901 24.036558 91.362343 57.6994505 1.761171677 -0.029854 157 95 SH14086 14086 MT COB Cytbi4 25.104342 123.225876 25.104342 99.121534 62.112938 1.793182072 -0.029865 171 14 SH21864 21864 copy of SH19499 28.261716 110.143686 69.202701 1.840123045 -0.029886 80 81 SH5337 5337 snR30 snR30 536 555 22.272629 78.539359 50.405994 1.702482183 -0.029887 40 88 SH8377 8377 snoRNA cluster 5 5' 24.060206 114.601957 24.060206 91.541751 57.8009785 1.761935191 -0.029888 186 47 SH6780 6780 snR50 76-90 + 3' 76 32.328139 116.676291 74.502215 1.872169185 -0.02989 78 68 SH6358 6358 snR43 snR43 31 43 26.130801 104.274954 65.2028775 1.814266762 -0.02991 198 102 SH4325 4325 telomerase RNA telomerase 661 678 27.102759 107.720453 67.411606 1.828734674 -0.02991 203 18 SH6692 6692 snR49 5' - 3 -14 3 25.124883 99.22767 62.1762765 1.79362471 -0.029912 24 8 SH5217 5217 snR30 5' 23.272762 85.654394 54.463578 1.736106169 -0.029926 58 25 SH1574 1574 Leu4 tRNA-intron 41 57 27.795751 109.177339 68.486545 1.835605258 -0.029934 119 83 SH4797 4797 snR5 snR5 156 177 27.788482 109.16246 68.475471 1.835535028 -0.029939 211 58 SH20699 20699 YJL001W spliced 24.063746 91.573718 57.818732 1.762068563 -0.029947 15 56 SH304 304 Arg4 3' flank 24.604158 95.649853 60.1270055 1.779069575 -0.029962 84 47 SH8455 8455 snoRNA cluster 5 snR128 67.105001 233.652879 67.105001 167.547878 117.3264395 2.069395891 -0.029967 208 30 SH8983 8983 snR17a / U3a U3a 201 218 25.689151 102.05785 63.8735005 1.805320718 -0.029977 17 90 SH10156 10156 RUF6 RUF6 626 647 23.687841 88.771991 56.229916 1.749967435 -0.029988 92 18 SH4012 4012 SRP RNA 5' 23.903001 90.384474 57.1437375 1.756968642 -0.030011 63 37 SH18029 18029 YLR316C_12_766358_765266_INTRON_230_285 5' exon 24.619178 119.38878 24.619178 95.769602 60.19439 1.779556018 -0.030016 110 21 SH9868 9868 RUF5-1 RUF5-1 146 163 22.994052 83.607333 53.3006925 1.726732852 -0.030051 146 43 SH14422 14422 MT 21S rRNA 21S rRNA3 22.595436 102.340197 22.595436 80.744761 51.6700985 1.713239289 -0.030078 116 45 SH16912 16912 YGL251C_7_31636_27921_INTRON_59_210 5' exon 27.571631 135.288503 27.571631 108.716872 68.1442515 1.833429226 -0.030079 212 66 SH2162 2162 Met2 5' flank 25.862406 102.937838 64.400122 1.80888669 -0.030092 106 39 SH18744 18744 YNL162W_14_331319_332151_INTRON_5_516 intron 25.718251 126.932358 25.718251 102.214107 63.966179 1.805950409 -0.030104 31 74 SH3941 3941 RNase MRP RNaseMRP 121 145 23.426224 86.81821 55.122217 1.741326676 -0.030144 87 9 SH4008 4008 SRP RNA 5' 21.834984 75.638468 48.736726 1.687856351 -0.030176 26 20 SH1942 1942 Lys2 5' flank 23.647432 88.48545 56.066441 1.748702989 -0.030192 178 66 SH12354 12354 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.096951 129.225284 26.096951 104.128333 65.112642 1.813665318 -0.030204 167 93 SH1602 1602 Leu4 3' flank 21.570012 73.903219 47.7366155 1.678851625 -0.030251 187 9 SH6403 6403 snR43 3' 28.609545 110.885075 69.74731 1.843527462 -0.030274 172 31 SH21009 21009 YML124C spliced 22.882215 82.809287 52.845751 1.723010074 -0.030291 95 50 SH690 690 Gln3 5' flank 28.159659 109.956324 69.0579915 1.839213943 -0.030301 91 72 SH14617 14617 MT 21S rRNA Sce1 endonuc 25.041903 122.887305 25.041903 98.845402 61.9436525 1.79199681 -0.030321 80 60 SH1537 1537 Leu3 3' flank 28.105524 109.846144 68.975834 1.83869696 -0.03034 144 30 SH1727 1727 Leu7 5' flank 27.869818 109.355871 68.6128445 1.836405424 -0.030347 142 53 SH737 737 Gln4 5' flank 24.496797 94.873593 59.685195 1.775866617 -0.030375 125 5 SH329 329 Arg5 5' flank 28.772085 111.226491 69.999288 1.845093623 -0.030392 50 65 SH302 302 Arg4 3' flank 27.265537 108.091821 67.678679 1.830451873 -0.030397 204 2 SH15511 15511 YBR048W_2_332790_333771_INTRON_46_556 intron 28.341784 137.682302 28.341784 110.340518 69.341151 1.840991046 -0.030416 80 22 SH12364 12364 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.938144 113.622688 23.938144 90.684544 57.311344 1.758240593 -0.030435 24 19 SH910 910 Glu3 61-72 + 3' flank 61 44.239036 134.224927 89.2319815 1.950520537 -0.03044 160 59 SH512 512 Asp2 3' flank 26.74983 107.003101 66.8764655 1.825273312 -0.030449 5 24 SH12723 12723 MT COX1 5' 23.959962 113.813248 23.959962 90.853286 57.406624 1.758962007 -0.030506 15 40 SH19294 19294 YPL175W_16_218629_220087_INTRON_18_117 intron/exon 28.442141 137.995587 28.442141 110.553446 69.4977935 1.841971016 -0.030508 151 7 SH5769 5769 snR35 snR35 31 45 27.219367 108.001996 67.6106815 1.830015314 -0.030528 11 57 SH11065 11065 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2211 2228 24223.13975 24113.01705 24168.0784 4.383242121 -0.030545 186 9 SH7296 7296 snR66 5' 675.125411 1025.482079 850.303745 2.929574092 -0.030563 129 54 SH11512 11512 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4446 4461 478.989009 759.005462 618.9972355 2.791688709 -0.030569 40 55 SH7218 7218 snR64 3' 24.90125 97.992491 61.4468705 1.788499769 -0.030615 13 63 SH8343 8343 snoRNA cluster4 snR53 24.373114 117.333312 24.373114 93.960198 59.166656 1.772077024 -0.030617 197 63 SH5144 5144 snR11 3' 30.470309 114.020345 72.245327 1.858809761 -0.030624 106 6 SH16249 16249 YDR397C_4_1266887_1266355_INTRON_38_129 5' exon 54.791279 203.425447 54.791279 149.634168 102.2127235 2.00950496 -0.030628 140 31 SH8932 8932 snR17a / U3a 5' 23.057778 84.129053 53.5934155 1.729111435 -0.030657 24 58 SH1982 1982 Lys2 3' flank 28.208992 110.081146 69.145069 1.839761214 -0.030686 168 84 SH17499 17499 YJL041W_10_365480_368069_INTRON_2_119 intron/exon 24.396477 117.540101 24.396477 94.143624 59.2700505 1.772835297 -0.030687 81 74 SH20726 20726 YJL177W spliced 38.079561 125.17358 81.6265705 1.91183155 -0.030701 207 93 SH4932 4932 snR9 snR9 66 78 42.614808 131.867802 87.241305 1.940722153 -0.030721 211 40 SH6752 6752 snR50 5' 26.549876 106.461563 66.5057195 1.822858996 -0.03073 43 85 SH5059 5059 snR10 3' 23.866033 90.177717 57.021875 1.756041494 -0.030736 17 17 SH9890 9890 RUF5-1 RUF5-1 256 275 23.261448 85.643289 54.4523685 1.736016775 -0.03074 4 42 SH10091 10091 RUF6 RUF6 301 322 24.084768 91.80696 57.945864 1.763022443 -0.030758 114 95 SH6167 6167 snR39B 3' 25.530961 101.329084 63.4300225 1.802294865 -0.030794 17 66 SH15457 15457 YBL087C_2_60732_59815_INTRON_43_546 intron 28.77032 139.017271 28.77032 111.246951 70.0086355 1.845151613 -0.0308 204 44 SH7105 7105 snR63 snR63 31 48 26.809302 107.150957 66.9801295 1.825945983 -0.030826 143 85 SH17391 17391 YIL069C_9_232366_231550_INTRON_4_412 intron 26.439857 131.352591 26.439857 105.912734 66.1762955 1.820702452 -0.030832 13 78 SH21433 21433 Tyr1_2 spliced 59.285425 156.169422 107.7274235 2.032326273 -0.030836 46 62 SH14911 14911 MT tRNA Tyr 5' 22.794352 104.010422 22.794352 82.21607 52.505211 1.720202408 -0.030842 186 10 SH5058 5058 snR10 3' 24.050639 91.561864 57.8062515 1.761974808 -0.030862 147 103 SH14270 14270 MT VAR1 includes 5’ processing site VAR1 24.127858 115.267346 24.127858 92.139488 58.133673 1.764427763 -0.030867 101 75 SH13586 13586 MT COX1 3' 22.362242 100.585068 22.362242 79.222826 50.792534 1.70579988 -0.030869 7 8 SH8336 8336 snoRNA cluster4 snR53 26.79387 132.915765 26.79387 107.121895 66.9578825 1.825801711 -0.030892 189 67 SH19289 19289 YPL175W_16_218629_220087_INTRON_18_117 exon/intron 23.96385 113.88225 23.96385 90.9184 57.441125 1.759222937 -0.030895 34 49 SH6837 6837 snR52 91-92 + 3' 91 22.263745 78.561507 50.412626 1.70253932 -0.030922 131 76 SH9280 9280 RUF1 5' 34.151543 119.403022 76.7772825 1.885232736 -0.030927 81 47 SH9513 9513 RUF3 5' 25.491702 101.143451 63.3175765 1.801524284 -0.030936 116 17 SH8302 8302 snoRNA cluster4 intergenic 24.730546 120.442608 24.730546 96.712062 60.721304 1.78334109 -0.030938 135 69 SH1351 1351 Ile3 3' flank 23.029207 83.94575 53.4874785 1.728252125 -0.030965 2 98 SH11949 11949 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6631 6644 31.47438 115.509681 73.4920305 1.866240247 -0.030974 106 44 SH6415 6415 snR45 5' 26.164665 104.534023 65.349344 1.815241232 -0.030986 107 46 SH20591 20591 YHR039C-A spliced 34.151227 119.408461 76.779844 1.885247225 -0.031028 178 72 SH13057 13057 MT COX1 COX1ai2 23.930639 113.617195 23.930639 90.686556 57.3085975 1.75821978 -0.031056 107 10 SH4345 4345 telomerase RNA telomerase 761 780 24.330952 93.684722 59.007837 1.770909695 -0.031063 16 60 SH10416 10416 RUF8 RUF8 6 23 26.391505 105.688449 66.039977 1.819806913 -0.031078 67 29 SH4028 4028 SRP RNA SRP RNA 31 48 24.168455 92.464532 58.3164935 1.765791402 -0.031087 28 30 SH8816 8816 LSR1 / U2 RNA U2 721 738 24.792836 97.206872 60.999854 1.785328796 -0.031106 208 52 SH13410 13410 MT COX1 intronic 24.018026 114.359703 24.018026 91.341677 57.6798515 1.761024134 -0.031108 199 56 SH11447 11447 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4121 4138 28.652301 111.022378 69.8373395 1.844087686 -0.031109 75 98 SH4442 4442 telomerase RNA telomerase 1246 1263 24.206998 92.758157 58.4825775 1.767026505 -0.031133 69 83 SH10579 10579 RUF8 RUF8 821 838 24.351148 93.844384 59.097766 1.771571064 -0.031137 182 80 SH20579 20579 YHR016C spliced 108.453273 229.090389 168.771831 2.227299962 -0.031196 89 104 SH2888 2888 Pro8 5' flank 23.560318 87.923061 55.7416895 1.746180128 -0.031219 17 19 SH16167 16167 YDR139C_4_733917_733611_INTRON_150_222 intron 23.030828 106.011432 23.030828 83.980604 53.505716 1.72840018 -0.031226 81 64 SH17590 17590 YJL191W_10_73786_74610_INTRON_11_418 intron 24.518599 118.641404 24.518599 95.122805 59.820702 1.776851505 -0.031232 173 104 SH18544 18544 YMR230W_13_732413_733140_INTRON_53_462 intron 24.045364 114.602967 24.045364 91.557603 57.8014835 1.761938985 -0.031236 93 91 SH6658 6658 snR48 3' 27.960754 109.59796 68.779357 1.837458111 -0.03125 140 21 SH14237 14237 MT tRNA Ser 5' 52.371876 197.517927 52.371876 146.146051 99.2589635 1.996769736 -0.031266 22 70 SH3551 3551 Tyr2 tRNA-exon/intron 26 42 26.793026 107.141424 66.967225 1.825862303 -0.031267 153 4 SH4467 4467 telomerase RNA 3' 24.905137 98.094004 61.4995705 1.788872083 -0.031326 9 4 SH8653 8653 LSR1 / U2 RNA 5' 24.664292 96.243743 60.4540175 1.781425167 -0.031332 97 46 SH5539 5539 snR33 5' - 3 -19 3 26.198274 104.733613 65.4659435 1.816015431 -0.031349 161 47 SH19797 19797 Negative Control 28.485394 110.692701 69.5890475 1.842540892 -0.031358 184 73 SH4308 4308 telomerase RNA telomerase 576 592 25.680341 102.125335 63.902838 1.805520146 -0.031372 92 4 SH4270 4270 telomerase RNA telomerase 386 405 22.130245 77.699047 49.914646 1.698227995 -0.031373 159 87 SH928 928 Glu3 3' flank 27.345175 108.315746 67.8304605 1.831424765 -0.031375 115 36 SH15521 15521 YBR048W_2_332790_333771_INTRON_46_556 intron 24.251739 116.370919 24.251739 93.11918 58.6854595 1.768530509 -0.031391 94 22 SH15083 15083 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.279081 116.605583 24.279081 93.326502 58.8027915 1.769397943 -0.031406 181 29 SH1173 1173 His1 3' flank 24.568633 95.52089 60.0447615 1.778475124 -0.031408 14 38 SH17300 17300 YHR141C_8_382752_381991_INTRON_5_445 3' exon 225.375352 622.754841 225.375352 398.379489 311.8774205 2.493983934 -0.031414 9 76 SH12954 12954 MT COX1 COX1ai2 23.195422 107.412219 23.195422 85.216797 54.2061095 1.734048238 -0.031453 79 44 SH20930 20930 YLR388W spliced 27.518255 108.684642 68.1014485 1.833156349 -0.031461 129 23 SH8560 8560 snR19 / U1 RNA U1 296 313 23.360846 86.457219 54.9090325 1.739643791 -0.031554 25 14 SH12017 12017 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6971 6992 24.625989 95.973882 60.2999355 1.780316848 -0.031564 100 41 SH5714 5714 snR34 snR34 491 506 25.918303 103.340213 64.629258 1.81042917 -0.031586 16 4 SH17932 17932 YLR093C_12_327416_326514_INTRON_17_157 exon/intron 23.190092 107.384043 23.190092 85.193951 54.1920215 1.733935352 -0.03164 56 33 SH6090 6090 snR37 snR37 366 383 27.712458 109.103045 68.4077515 1.835105316 -0.031657 33 90 SH21469 21469 copy of SH1239 27.163479 107.948976 67.5562275 1.82966539 -0.031661 140 84 SH16959 16959 YGR029W_7_543547_544199_INTRON_87_169 3' exon 30.177105 142.820618 30.177105 113.643513 71.910309 1.856791155 -0.031677 160 19 SH11771 11771 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5741 5754 87.111289 197.377058 142.2441735 2.153034486 -0.031714 205 9 SH3987 3987 RNase MRP 3' 23.927591 90.726665 57.327128 1.758360185 -0.03173 201 89 SH13990 13990 MT COB intronic 22.266628 99.912254 22.266628 78.645626 50.456127 1.702913911 -0.031737 196 89 SH8542 8542 snR19 / U1 RNA U1 206 223 24.254643 93.174447 58.714545 1.7687457 -0.031741 16 50 SH21666 21666 copy of SH9401 37.644127 124.591617 81.117872 1.909116549 -0.031766 43 52 SH7328 7328 snR66 3' 35.109595 120.822457 77.966026 1.891905398 -0.031776 179 56 SH5713 5713 snR34 snR34 486 501 26.668298 106.904913 66.7866055 1.824689371 -0.031777 50 81 SH15652 15652 YBR189W_2_604466_605466_INTRON_8_420 intron 35.001795 154.672197 35.001795 120.670402 77.8360985 1.891181059 -0.031793 34 2 SH19847 19847 Negative Control 32.908626 117.642918 75.275772 1.876655218 -0.031802 20 65 SH5911 5911 snR36 snR36 11 32 30.562567 114.222982 72.3927745 1.859695222 -0.031826 59 58 SH5870 5870 snR35 536-540 + 3' 536 26.064239 104.097374 65.0808065 1.813452926 -0.031846 137 70 SH5886 5886 snR35 3' 336.66631 559.395666 448.030988 2.651308053 -0.031854 71 70 SH9224 9224 snR6 / U6 RNA 5' - 6 -9 6 23.875405 90.351394 57.1133995 1.756738011 -0.031862 25 27 SH1220 1220 Ile1 tRNA 61 73 32.435953 116.947152 74.6915525 1.873271487 -0.031865 21 36 SH18773 18773 YNL265C_14_145280_144279_INTRON_28_132 5' exon 33.61342 151.292523 33.61342 118.679103 76.1462615 1.881648586 -0.031876 139 65 SH7022 7022 snR62 5' 26.04156 103.98627 65.013915 1.813006319 -0.031887 168 26 SH16970 16970 YGR034W_7_555923_556666_INTRON_20_496 intron 24.378544 117.502879 24.378544 94.124335 59.2514395 1.772698906 -0.031892 54 2 SH3052 3052 Ser3 5' flank 27.949477 109.613611 68.781544 1.837471921 -0.031923 137 51 SH1587 1587 Leu4 106-114 + 3' flank 106 24.277478 93.365003 58.8212405 1.769534179 -0.031934 3 70 SH19768 19768 Negative Control 109.916991 231.354522 170.6357565 2.232070042 -0.031936 18 45 SH9754 9754 RUF4 RUF4 546 558 27.622643 108.932569 68.277606 1.834278285 -0.031962 126 30 SH17957 17957 YLR185W_12_522665_523290_INTRON_8_366 intron 27.836996 136.220404 27.836996 109.383408 68.610202 1.836388698 -0.032001 119 80 SH19780 19780 Negative Control 76.099671 181.021531 128.560601 2.109107894 -0.032004 146 21 SH19037 19037 YOR234C_15_779404_778554_INTRON_20_546 intron 24.898612 122.010705 24.898612 98.112093 61.5053525 1.788912912 -0.032006 13 53 SH7744 7744 snoRNA cluster1 intergenic 22.964155 105.523331 22.964155 83.559176 53.2616655 1.726414743 -0.032011 119 91 SH10494 10494 RUF8 RUF8 396 414 53.149227 147.342295 100.245761 2.001066017 -0.032064 19 61 SH20340 20340 YER093C-A spliced 26.199951 104.803645 65.501798 1.816253221 -0.032098 57 76 SH888 888 Glu3 5' flank 23.758545 89.51193 56.6352375 1.753086726 -0.032172 153 35 SH18902 18902 YOL120C_15_94401_93394_INTRON_113_559 intron 23.122554 106.865539 23.122554 84.742985 53.9327695 1.731852722 -0.032194 71 98 SH3320 3320 Thr3 5' flank 22.101965 77.574288 49.8381265 1.697561708 -0.032203 140 39 SH19485 19485 YPT1 48.806087 141.03665 94.9213685 1.977363991 -0.032213 2 65 SH14399 14399 MT 21S rRNA 21S rRNA3 24.028639 114.555801 24.028639 91.527162 57.7779005 1.761761757 -0.032241 10 31 SH18253 18253 YML034W_13_209525_212155_INTRON_1921_2046 intron/exon 23.422246 109.402769 23.422246 86.980523 55.2013845 1.74194997 -0.032257 29 11 SH3361 3361 Thr3 3' flank 28.523238 110.823781 69.6735095 1.843067687 -0.032258 189 5 SH4451 4451 telomerase RNA 1291-1301 + 3' 1291 24.418971 94.467109 59.44304 1.774101012 -0.03227 156 85 SH14113 14113 MT COB intronic 23.385429 109.093896 23.385429 86.708467 55.046948 1.740733245 -0.032298 185 6 SH19075 19075 YOR293W_15_867094_867848_INTRON_53_489 intron 26.42853 131.407691 26.42853 105.979161 66.2038455 1.820883216 -0.032321 85 45 SH10460 10460 RUF8 RUF8 226 240 25.528296 101.437355 63.4828255 1.802656248 -0.032323 141 42 SH3478 3478 Tyr1 5' flank 75.290222 179.853668 127.571945 2.105755177 -0.032324 28 92 SH15370 15370 YBL027W_2_168385_169338_INTRON_3_386 intron 29.22839 140.482684 29.22839 112.254294 70.741342 1.849673294 -0.032338 179 36 SH19057 19057 YOR234C_15_779404_778554_INTRON_20_546 intron 23.519593 110.2432 23.519593 87.723607 55.6216 1.745243478 -0.032386 198 68 SH19759 19759 Negative Control 27.216038 108.102283 67.6591605 1.830326605 -0.032399 202 88 SH6041 6041 snR37 snR37 121 139 24.472918 94.889383 59.6811505 1.775837187 -0.032401 165 7 SH15346 15346 YBL018C_2_186436_185960_INTRON_48_122 intron 22.602881 102.591043 22.602881 80.988162 51.7955215 1.71429221 -0.032437 164 47 SH18584 18584 YNL050C_14_534978_534075_INTRON_18_108 5' exon 24.302432 116.905094 24.302432 93.602662 58.952547 1.770502573 -0.03245 94 88 SH914 914 Glu3 3' flank 22.466551 80.059775 51.263163 1.709805399 -0.03247 137 22 SH6538 6538 snR46 181-197 + 3' 181 28.920438 111.654571 70.2875045 1.846878124 -0.032478 175 58 SH6120 6120 snR39B 5' 26.480523 106.256471 66.368497 1.821961983 -0.032486 105 20 SH10148 10148 RUF6 RUF6 586 605 29.001396 111.82158 70.411488 1.847643522 -0.032494 125 74 SH13348 13348 MT COX1 COX1-ai5a 28.026004 136.832828 28.026004 109.806824 68.916414 1.838322671 -0.032503 213 25 SH12686 12686 MT tRNA Trp 3' 23.79116 112.577992 23.79116 89.786832 56.788996 1.754264191 -0.032506 129 18 SH1930 1930 Lys1 3' flank 23.47706 87.414961 55.4460105 1.743870303 -0.032509 197 93 SH9208 9208 snR6 / U6 RNA 5' 25.575724 101.690453 63.6330885 1.803683003 -0.032509 173 100 SH2491 2491 Pro1 5' flank 27.759135 109.250984 68.5050595 1.835722648 -0.032524 127 90 SH19145 19145 YPL075W_16_412249_415357_INTRON_9_759 intron 23.821982 112.840902 23.821982 90.01892 56.920451 1.755268332 -0.032548 143 92 SH6992 6992 snR60 snR60 41 58 41.277843 130.034795 85.656319 1.932759407 -0.032553 165 74 SH14515 14515 MT 21S rRNA 21S rRNA3 24.366382 117.463298 24.366382 94.096916 59.231649 1.772553824 -0.032562 7 24 SH175 175 Arg2 5' flank - tRNA7 5' flank 7 23.920346 90.752934 57.33664 1.758432239 -0.032591 26 74 SH12467 12467 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 1769.707962 4192.535715 1769.707962 2423.827753 2096.767858 3.32155035 -0.032594 38 11 SH18272 18272 YML056C_13_164176_162194_INTRON_461_868 intron 24.350392 117.330191 24.350392 93.979799 59.1650955 1.77206557 -0.032602 67 20 SH17833 17833 YKR094C_11_618384_617630_INTRON_9_376 intron 24.514382 118.739063 24.514382 95.224681 59.8695315 1.77720586 -0.032604 194 11 SH14228 14228 MT ATP9 ATP9/3 24.162895 115.733154 24.162895 92.570259 58.366577 1.766164224 -0.032641 145 7 SH21277 21277 YPL129W spliced 24.438904 94.6554 59.547152 1.774860995 -0.032652 203 26 SH3230 3230 Thr1 tRNA 6 22 25.75907 102.625255 64.1921625 1.807482006 -0.032665 155 88 SH15345 15345 YBL018C_2_186436_185960_INTRON_48_122 exon/intron 24.600425 119.490813 24.600425 95.890388 60.2454065 1.779923939 -0.032701 214 32 SH8148 8148 snoRNA cluster 3; intergenic 23.231237 107.82659 23.231237 85.595353 54.413295 1.735705025 -0.032713 112 101 SH18258 18258 YML056C_13_164176_162194_INTRON_461_868 exon/intron 23.790911 112.595736 23.790911 89.804825 56.797868 1.754332034 -0.032721 204 58 SH13620 13620 MT ATP6 ATP6 24.270784 116.661573 24.270784 93.390789 58.8307865 1.769604654 -0.03273 47 3 SH15294 15294 MT 9S rRNA 9S / 3' 23.518679 110.267451 23.518679 87.748772 55.6337255 1.745338143 -0.032735 155 94 SH5665 5665 snR34 snR34 246 263 23.279262 85.954944 54.617103 1.737328661 -0.032735 25 86 SH20836 20836 YKR095W-A spliced 27.318269 108.33882 67.8285445 1.831412498 -0.032762 164 57 SH10278 10278 RUF7 RUF7 1 18 26.564766 106.708341 66.6365535 1.823712527 -0.032778 60 89 SH5470 5470 snR32 snR32 11 28 23.525199 87.801982 55.6635905 1.745571216 -0.03278 105 94 SH4734 4734 snR4 3' 24.779723 97.273906 61.0268145 1.785520701 -0.032788 197 31 SH5522 5522 snR32 3' 24.301497 93.630214 58.9658555 1.770600604 -0.03281 99 27 SH21568 21568 copy of SH5228 34.982237 120.70285 77.8425435 1.891217018 -0.032813 114 10 SH19358 19358 YPL249C-A_16_76239_75699_INTRON_17_254 3' exon 198.182533 556.766628 198.182533 359.584095 278.883314 2.445422531 -0.032822 187 66 SH8274 8274 snoRNA cluster4 snR67 39.98574 167.116309 39.98574 128.130569 84.0581545 1.924579851 -0.032835 33 19 SH12365 12365 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.849007 113.095639 23.849007 90.246632 57.0478195 1.756239049 -0.032845 125 100 SH15635 15635 YBR186W_2_600511_602318_INTRON_1552_1664 exon/intron 24.927683 122.352374 24.927683 98.424691 61.676187 1.790117517 -0.032878 68 95 SH6615 6615 snR48 5' 27.610951 108.961515 68.286233 1.834333156 -0.032886 133 82 SH10582 10582 RUF8 RUF8 836 853 23.723113 89.315389 56.519251 1.752196398 -0.03295 54 52 SH17501 17501 YJL041W_10_365480_368069_INTRON_2_119 3' exon 23.782949 112.551664 23.782949 89.768715 56.775832 1.754163507 -0.032969 97 49 SH18030 18030 YLR316C_12_766358_765266_INTRON_230_285 exon/intron 26.265127 130.471093 26.265127 105.205966 65.7355465 1.817800278 -0.032979 59 67 SH15490 15490 YBL092W_2_45639_46364_INTRON_1_333 intron 24.714275 120.50449 24.714275 96.790215 60.752245 1.783562331 -0.032983 32 25 SH6404 6404 snR43 3' 26.425712 106.020687 66.2231995 1.821010159 -0.032992 118 20 SH13468 13468 MT COX1 intronic 24.397685 117.773383 24.397685 94.375698 59.3866915 1.773689131 -0.032992 42 11 SH13544 13544 MT COX1 intronic 28.547364 138.464646 28.547364 110.917282 69.732323 1.843434133 -0.033 48 52 SH2810 2810 Pro6 3' flank 22.715008 81.826384 52.270696 1.718258283 -0.033029 122 59 SH4220 4220 telomerase RNA telomerase 136 152 25.245987 100.079755 62.662871 1.797010289 -0.033064 43 54 SH8093 8093 snoRNA cluster 2 3' 24.926963 122.365262 24.926963 98.438299 61.682631 1.79016289 -0.033068 35 98 SH8781 8781 LSR1 / U2 RNA U2 546 560 136.72692 270.56731 203.647115 2.308878262 -0.033098 123 23 SH3894 3894 RNaseP 3' 24.394907 94.366913 59.38091 1.773646849 -0.033119 133 3 SH2866 2866 Pro7 3' flank 23.279766 85.996341 54.6380535 1.737495219 -0.033154 79 25 SH3429 3429 Trp1 5' flank 21.903949 76.328819 49.116384 1.691226386 -0.033208 152 23 SH2077 2077 Lys4 tRNA-intron/exon 51 67 84.767146 194.058671 139.4129085 2.144302988 -0.033288 180 81 SH13788 13788 MT COB intronic 27.755245 136.043043 27.755245 109.287798 68.5215215 1.835826998 -0.033299 178 26 SH299 299 Arg4 3' flank 22.901111 83.209784 53.0554475 1.724729982 -0.03331 165 81 SH1654 1654 Leu5 3' flank 22.60618 81.083367 51.8447735 1.714704981 -0.033325 42 17 SH5412 5412 snR31 snR31 126 142 24.34981 94.045397 59.1976035 1.772304126 -0.033328 45 85 SH9685 9685 RUF4 RUF4 201 216 33.374946 118.415748 75.895347 1.880215151 -0.033333 15 48 SH17006 17006 YGR148C_7_788173_787307_INTRON_1_392 exon/intron 26.277709 130.577315 26.277709 105.299606 65.7886575 1.818151024 -0.033342 105 18 SH17953 17953 YLR185W_12_522665_523290_INTRON_8_366 exon/intron 39.106319 164.963143 39.106319 126.856824 82.9815715 1.918981655 -0.033359 46 39 SH14259 14259 MT VAR1 includes 5’ processing site 5' 22.869812 104.854643 22.869812 82.984831 52.9273215 1.723679916 -0.033361 21 56 SH18315 18315 YML085C_13_99400_97941_INTRON_26_141 5' exon 26.174565 129.955939 26.174565 104.781374 65.4779695 1.816095203 -0.033389 139 52 SH8029 8029 snoRNA cluster 2 snR55 24.407854 117.899199 24.407854 94.491345 59.4495995 1.774148933 -0.03339 22 78 SH9775 9775 RUF4 RUF4 651 666 303.199305 511.639804 407.4195545 2.61004187 -0.033403 36 21 SH20011 20011 YBR084C-A spliced 41.096747 129.824578 85.4606625 1.931766255 -0.03342 138 15 SH13213 13213 MT COX1 COX1-ai4 24.630632 119.823097 24.630632 96.192465 60.4115485 1.781119968 -0.033422 195 96 SH8946 8946 snR17a / U3a U3a 16 34 27.222203 108.175357 67.69878 1.830580842 -0.033445 149 42 SH19288 19288 YPL175W_16_218629_220087_INTRON_18_117 5' exon 25.034391 123.091089 25.034391 99.056698 62.0455445 1.7927106 -0.033526 35 101 SH13177 13177 MT COX1 Exon4 24.248543 116.547848 24.248543 93.299305 58.773924 1.769184687 -0.033527 32 81 SH17334 17334 YIL018W_9_316766_317930_INTRON_5_404 intron 25.84679 127.985872 25.84679 103.139082 64.492936 1.809512148 -0.033554 210 94 SH19568 19568 AEP2/ATP13 0.6 159.181965 303.204296 231.1931305 2.363974926 -0.033559 130 2 SH21514 21514 copy of SH3109 25.153407 99.656312 62.4048595 1.79521841 -0.033578 109 89 SH12034 12034 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7056 7085 19.554329 61.834948 40.6946385 1.609537195 -0.033583 80 23 SH10605 10605 RUF8 951 + 3' 951 23.929612 90.91678 57.423196 1.75908736 -0.033609 164 44 SH12442 12442 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 38.716 164.018983 38.716 126.302983 82.5094915 1.916503911 -0.03367 130 103 SH6324 6324 snR42 3' 25.511495 101.461118 63.4863065 1.802680061 -0.033682 74 24 SH13750 13750 MT COB Exon1 23.359761 109.002171 23.359761 86.64241 55.0010855 1.740371261 -0.033689 83 88 SH9816 9816 RUF4 3' 23.938385 90.992765 57.465575 1.759407757 -0.033723 119 104 SH18376 18376 YMR116C_13_500687_499455_INTRON_538_810 5' exon 29.18793 140.456316 29.18793 112.268386 70.728158 1.849592348 -0.03373 202 75 SH16481 16481 YER102W_5_362729_363698_INTRON_1_360 intron 29.786791 141.959608 29.786791 113.172817 71.479804 1.854183353 -0.03373 137 44 SH15000 15000 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.895403 128.294476 25.895403 103.399073 64.647238 1.810549975 -0.033736 188 16 SH18679 18679 YNL112W_14_413636_416278_INTRON_1274_2275 intron 25.83202 127.911932 25.83202 103.079912 64.455966 1.809263122 -0.033744 127 73 SH15644 15644 YBR189W_2_604466_605466_INTRON_8_420 5' exon 46.34599 182.905151 46.34599 137.559161 91.9525755 1.963563898 -0.033766 9 34 SH18878 18878 YNR053C_14_723108_721117_INTRON_811_1341 intron 24.508077 118.799959 24.508077 95.291882 59.8999795 1.777426674 -0.033784 148 11 SH14522 14522 MT 21S rRNA 21S rRNA3 32.296722 148.148821 32.296722 116.852099 74.5744105 1.872589829 -0.033799 47 91 SH15736 15736 YBR230C_2_680008_679507_INTRON_12_108 3' exon 53.01182 199.287538 53.01182 147.275718 100.143769 2.000623932 -0.033808 152 10 SH7764 7764 snoRNA cluster1 snR76 33.502304 151.133525 33.502304 118.631221 76.0667625 1.881194933 -0.03384 152 29 SH14211 14211 MT ATP9 5' 25.308537 124.765798 25.308537 100.457261 62.882899 1.798532555 -0.033876 65 47 SH18608 18608 YNL069C_14_494998_493953_INTRON_29_477 intron 83.899986 275.722331 83.899986 192.822345 138.3611655 2.141014212 -0.033881 15 39 SH1294 1294 Ile2 3' flank 23.080131 84.579541 53.829836 1.731023057 -0.033892 128 68 SH14685 14685 MT 21S rRNA 21S rRNA4 23.46525 109.918099 23.46525 87.452849 55.4590495 1.743972422 -0.033895 126 79 SH10711 10711 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 441 458 23.749147 89.603003 56.676075 1.753399766 -0.033907 140 58 SH4809 4809 snR5 3' 22.623093 81.248353 51.935723 1.715466182 -0.033923 14 8 SH5242 5242 snR30 snR30 61 77 23.261089 85.931792 54.5964405 1.737164329 -0.033984 19 44 SH16432 16432 YER074W_5_306319_307192_INTRON_4_469 intron 23.432885 109.650931 23.432885 87.218046 55.3254655 1.742925077 -0.033988 61 77 SH19766 19766 Negative Control 25.410614 100.978475 63.1945445 1.800679588 -0.033988 200 64 SH6223 6223 snR40 3' 23.93271 90.978032 57.455371 1.759330633 -0.034018 157 81 SH21234 21234 YOR293W spliced 29.414704 112.628904 71.021804 1.851391699 -0.034037 109 66 SH911 911 Glu3 66-72 + 3' flank 66 22.549575 80.755473 51.652524 1.713091548 -0.034058 90 23 SH9269 9269 RUF1 5' 30.442652 114.170088 72.30637 1.859176559 -0.03408 37 65 SH19125 19125 YPL075W_16_412249_415357_INTRON_9_759 5' exon 23.460387 109.894645 23.460387 87.434258 55.4473225 1.743880579 -0.034091 186 80 SH10496 10496 RUF8 RUF8 406 423 26.082906 104.376872 65.229889 1.814446639 -0.03411 50 92 SH12877 12877 MT COX1 COX1ai1 25.819565 127.868431 25.819565 103.048866 64.4342155 1.809116545 -0.034137 72 62 SH21050 21050 YMR143W spliced 28.319944 110.516131 69.4180375 1.841472332 -0.034184 177 68 SH2273 2273 Phe2 5' flank 24.059663 91.945609 58.002636 1.763447731 -0.034222 101 23 SH15001 15001 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 23.46406 109.93827 23.46406 87.47421 55.469135 1.744051393 -0.034226 209 8 SH3900 3900 RNase MRP 5' 23.769856 89.787591 56.7787235 1.754185624 -0.034226 181 35 SH13365 13365 MT COX1 intronic 24.856458 121.869561 24.856458 98.013103 61.4347805 1.788414311 -0.03426 141 80 SH14512 14512 MT 21S rRNA 21S rRNA3 32.925077 149.733948 32.925077 117.808871 75.366974 1.877181079 -0.034262 47 48 SH9594 9594 RUF3 RUF3 356 373 22.682325 81.696854 52.1895895 1.717583881 -0.034293 72 80 SH21458 21458 copy of SH634 24.342234 94.084348 59.213291 1.772419199 -0.034326 9 46 SH7745 7745 snoRNA cluster1 intergenic 23.576756 110.914476 23.576756 88.33772 55.957238 1.74785627 -0.03437 195 80 SH8286 8286 snoRNA cluster4 intergenic 23.687216 111.862486 23.687216 89.17527 56.431243 1.751519616 -0.034372 61 64 SH15788 15788 YDL029W_4_399336_400634_INTRON_23_145 intron 23.46107 109.926404 23.46107 87.465334 55.463202 1.744004939 -0.034375 111 46 SH9595 9595 RUF3 RUF3 361 382 21.298194 72.468039 46.8831165 1.671016473 -0.034379 50 79 SH12014 12014 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6956 6978 23.352292 86.649742 55.001017 1.74037072 -0.034387 183 5 SH7106 7106 snR63 snR63 36 54 24.089867 92.187793 58.13883 1.764466288 -0.034389 142 18 SH20222 20222 YDR092W spliced 31.128481 115.197501 73.162991 1.864291452 -0.034406 153 78 SH7156 7156 snR63 3' 24.209258 93.088439 58.6488485 1.76825949 -0.034419 191 51 SH11853 11853 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6151 6170 23.830336 90.254194 57.042265 1.756196762 -0.034423 155 103 SH17337 17337 YIL018W_9_316766_317930_INTRON_5_404 intron 24.899034 122.262642 24.899034 98.363608 61.631321 1.789801476 -0.03447 151 61 SH21796 21796 copy of SH14861 22.923145 83.473162 53.1981535 1.725896558 -0.034475 68 87 SH20420 20420 YGL031C spliced 37.582787 124.670096 81.1264415 1.909162427 -0.034482 173 53 SH14731 14731 MT tRNA cys; tRNA his tRNA his 23.635019 111.426107 23.635019 88.791088 56.2130535 1.749837177 -0.034501 136 103 SH7859 7859 snoRNA cluster1 intergenic 22.126579 99.048924 22.126579 77.922345 50.024462 1.699182427 -0.034532 156 76 SH19883 19883 Negative Control 24.911922 98.470293 61.6911075 1.790222567 -0.034537 5 45 SH12890 12890 MT COX1 COX1ai1 24.057108 115.014263 24.057108 91.957155 58.0071315 1.76348139 -0.034547 109 90 SH9100 9100 snR14 / U4 RNA U4 116 135 21.283861 72.389149 46.836505 1.67058448 -0.034549 52 51 SH4235 4235 telomerase RNA telomerase 211 230 22.232442 78.641583 50.4370125 1.702749354 -0.034597 60 87 SH6163 6163 snR39B 3' 23.716369 89.420005 56.568187 1.75257226 -0.034618 97 77 SH19438 19438 YPR187W_16_911252_911795_INTRON_21_96 5' exon 26.498483 132.027609 26.498483 106.529126 66.5138045 1.82291179 -0.03466 138 92 SH21899 21899 copy of SH19199 22.652695 81.513381 52.083038 1.716696309 -0.034666 94 101 SH2006 2006 Lys3 5' flank 23.828491 90.265432 57.0469615 1.756232517 -0.034692 153 76 SH13887 13887 MT COB intronic 23.000825 106.065146 23.000825 84.064321 53.532573 1.728618118 -0.034693 160 58 SH560 560 Cys1 3' flank 22.591244 81.093408 51.842326 1.714684479 -0.0347 98 65 SH14030 14030 MT COB Exon4 25.83756 128.023005 25.83756 103.185445 64.5115025 1.809637157 -0.034702 30 64 SH19390 19390 YPR043W_16_654161_654842_INTRON_3_405 intron 25.015698 123.071217 25.015698 99.055519 62.0356085 1.792641047 -0.034714 37 57 SH12321 12321 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 22.936462 105.528549 22.936462 83.592087 53.2642745 1.726436016 -0.034715 71 31 SH21428 21428 Tyr1_2 spliced 46.21913 137.441828 91.830479 1.96298685 -0.034716 89 20 SH14529 14529 MT 21S rRNA 21S rRNA3 23.922646 113.892706 23.922646 90.97006 57.446353 1.759262463 -0.034736 167 18 SH8762 8762 LSR1 / U2 RNA U2 451 467 87.391253 198.138193 142.764723 2.154620907 -0.034763 127 86 SH11207 11207 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2921 2941 22.343461 79.407702 50.8755815 1.706509386 -0.03477 188 86 SH13438 13438 MT COX1 intronic 23.699367 112.004231 23.699367 89.304864 56.5021155 1.752064709 -0.03477 120 31 SH18749 18749 YNL162W_14_331319_332151_INTRON_5_516 intron 22.65789 103.218705 22.65789 81.560815 52.1093525 1.716915677 -0.034779 177 43 SH762 762 Gln4 3' flank 29.378531 112.614602 70.9965665 1.851237346 -0.03478 201 10 SH3527 3527 Tyr2 5' flank 24.054253 91.961544 58.0078985 1.763487132 -0.03482 26 35 SH17792 17792 YKL186C_11_93537_92746_INTRON_71_233 intron 25.193123 124.146396 25.193123 99.953273 62.573198 1.796388352 -0.034829 136 81 SH9374 9374 RUF1 RUF1 446 462 28.12229 110.14374 69.133015 1.839685498 -0.03484 153 80 SH13114 13114 MT COX1 COX1ai3 23.285979 108.480905 23.285979 86.194926 54.7404525 1.738308383 -0.034843 173 73 SH6385 6385 snR43 snR43 166 185 21.96006 76.830895 49.3954775 1.693687188 -0.03486 110 91 SH18341 18341 YML124C_13_23684_22049_INTRON_26_323 intron 22.930717 105.493513 22.930717 83.562796 53.2467565 1.726293158 -0.034864 48 27 SH12300 12300 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.243627 134.54646 27.243627 108.302833 67.77323 1.831058184 -0.034876 6 63 SH17129 17129 YHR010W_8_126513_127484_INTRON_32_592 intron 22.097713 98.853689 22.097713 77.755976 49.9268445 1.698334118 -0.034886 78 38 SH18936 18936 YOL121C_15_92849_92025_INTRON_21_410 intron 23.69705 111.996382 23.69705 89.299332 56.498191 1.752034542 -0.0349 98 63 SH18895 18895 YOL120C_15_94401_93394_INTRON_113_559 intron 24.960667 122.756327 24.960667 98.79566 61.8781635 1.791537416 -0.034914 131 8 SH19805 19805 Negative Control 27.452304 108.745688 68.098996 1.833140709 -0.034922 154 68 SH17527 17527 YJL136C_10_156971_156248_INTRON_25_484 intron/exon 22.618776 102.920973 22.618776 81.302197 51.9604865 1.715673209 -0.034941 135 43 SH14017 14017 MT COB Exon4 21.689687 95.729483 21.689687 75.039796 48.3647415 1.684528871 -0.034947 140 52 SH13809 13809 MT COB Cytbi2 22.374678 101.00963 22.374678 79.634952 51.004815 1.707611177 -0.034958 169 46 SH17081 17081 YHL001W_8_104270_105084_INTRON_130_527 5' exon 26.612174 132.581318 26.612174 106.969144 66.790659 1.824715729 -0.035018 33 71 SH18120 18120 YLR388W_12_898158_898821_INTRON_1_488 exon/intron 23.425712 109.687559 23.425712 87.261847 55.3437795 1.743068814 -0.035059 92 64 SH6860 6860 snR56 5' 21.628331 74.645217 48.136774 1.682476982 -0.035087 154 60 SH15481 15481 YBL092W_2_45639_46364_INTRON_1_333 5' exon 22.870897 105.014689 22.870897 83.143792 53.0073445 1.724336048 -0.035099 106 86 SH16413 16413 YER056C-A_5_270183_269421_INTRON_38_434 intron 23.398581 109.465788 23.398581 87.067207 55.232894 1.742197799 -0.03516 92 72 SH18443 18443 YMR142C_13_551206_550205_INTRON_5_406 intron 25.064332 123.398354 25.064332 99.334022 62.199177 1.793784638 -0.035164 40 103 SH10419 10419 RUF8 RUF8 21 40 25.260992 100.320596 62.790794 1.797895975 -0.03517 94 65 SH10353 10353 RUF7 RUF7 376 392 27.279747 108.397463 67.838605 1.831476909 -0.035194 148 102 SH5788 5788 snR35 snR35 126 145 24.443472 94.937413 59.6904425 1.775904798 -0.035194 135 57 SH19606 19606 RNA14 1.1 26.111056 104.609115 65.3600855 1.815312612 -0.035205 169 11 SH18723 18723 YNL147W_14_350937_351380_INTRON_19_138 5' exon 25.464314 125.810994 25.464314 101.34668 63.405497 1.802126911 -0.035226 141 30 SH6459 6459 snR45 snR45 141 158 29.695485 113.117555 71.40652 1.853737868 -0.035229 104 38 SH3273 3273 Thr2 5' flank 67.604146 168.764367 118.1842565 2.072559627 -0.035237 32 50 SH21286 21286 YPL143W spliced 26.543216 106.806713 66.6749645 1.823962793 -0.035259 2 72 SH15102 15102 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 22.534222 102.283896 22.534222 80.749674 51.641948 1.713002616 -0.035277 78 52 SH14075 14075 MT COB Cytbi4 23.707359 112.120671 23.707359 89.413312 56.5603355 1.752511977 -0.03528 180 76 SH14850 14850 MT tRNA Ser2; tRNA Arg2 5' 21.76033 96.293313 21.76033 75.532983 48.6466565 1.687052996 -0.03528 7 96 SH5987 5987 snR36 3' 24.452226 95.01293 59.732578 1.776211259 -0.035285 92 81 SH19336 19336 YPL241C_16_96258_95372_INTRON_26_105 exon/intron 74.106801 251.520344 74.106801 178.413543 126.260172 2.101266377 -0.035288 138 18 SH16338 16338 YDR500C_4_1450856_1450201_INTRON_8_396 exon/intron 26.754192 133.045426 26.754192 107.291234 67.022713 1.826222004 -0.035352 28 25 SH4805 4805 snR5 196-204 + 3' 196 21.979115 76.997079 49.488097 1.694500754 -0.035358 40 20 SH3685 3685 Val3 5' flank 26.868402 107.535559 67.2019805 1.827382072 -0.035371 118 72 SH20847 20847 YLR048W spliced 32.66452 117.488015 75.0762675 1.875502673 -0.03538 4 23 SH14509 14509 MT 21S rRNA 21S rRNA3 23.915297 113.89497 23.915297 90.979673 57.447485 1.75927102 -0.035427 179 80 SH19090 19090 YOR312C_15_901173_900242_INTRON_2_427 5' exon 29.676954 141.777832 29.676954 113.100878 71.388916 1.853630787 -0.035434 209 72 SH18532 18532 YMR230W_13_732413_733140_INTRON_53_462 5' exon 28.533211 138.564886 28.533211 111.031675 69.782443 1.84374617 -0.035438 40 56 SH13903 13903 MT COB Exon3 25.0368 123.254609 25.0368 99.217809 62.1273045 1.793282511 -0.035442 67 70 SH15667 15667 YBR189W_2_604466_605466_INTRON_8_420 3' exon 23.675563 111.862327 23.675563 89.186764 56.4311635 1.751519005 -0.035444 119 42 SH5222 5222 snR30 5' 23.655997 89.038412 56.3472045 1.750872375 -0.035448 23 13 SH16051 16051 YDL191W_4_117665_118518_INTRON_4_494 intron 25.14649 123.91477 25.14649 99.76828 62.457385 1.795583797 -0.035452 78 85 SH20452 20452 YGL137W spliced 24.32547 94.067236 59.196353 1.772294951 -0.035465 14 55 SH9241 9241 snR6 / U6 RNA U6 76 92 89.648293 201.554738 145.6015155 2.163165895 -0.035466 110 101 SH20615 20615 YHR097C spliced 48.241202 140.440208 94.340705 1.974699117 -0.035494 106 70 SH19691 19691 Negative Control 41.321467 130.295669 85.808568 1.933530654 -0.035519 147 81 SH10714 10714 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 456 469 33.781868 119.138684 76.460276 1.883435861 -0.035564 105 75 SH13681 13681 MT ORF 5 (hypothetical) 5' 22.221635 99.867709 22.221635 78.646074 50.4338545 1.702722161 -0.035575 80 11 SH9867 9867 RUF5-1 RUF5-1 141 160 23.762291 89.857594 56.8099425 1.75442435 -0.035593 58 60 SH3853 3853 RNaseP RNaseP 231 243 25.836066 103.251285 64.5436755 1.809853693 -0.035609 197 6 SH5622 5622 snR34 snR34 31 46 26.421606 106.218563 66.3200845 1.821645071 -0.035619 66 66 SH7160 7160 snR63 3' 24.629689 96.404134 60.5169115 1.781876756 -0.035637 121 99 SH10343 10343 RUF7 RUF7 326 345 25.835707 103.253479 64.544593 1.809859867 -0.035658 203 103 SH18519 18519 YMR225C_13_721402_720959_INTRON_59_205 5' exon 24.71808 120.806308 24.71808 97.088228 60.903154 1.784639784 -0.035685 63 95 SH19735 19735 Negative Control 26.733735 107.269209 67.001472 1.826084344 -0.035731 31 9 SH12265 12265 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.517009 138.533325 28.517009 111.016316 69.7666625 1.843647948 -0.035747 156 103 SH5428 5428 snR31 snR31 206 225 24.754363 97.374977 61.06467 1.785790014 -0.035757 72 102 SH19720 19720 Negative Control 25.426301 101.197735 63.312018 1.801486156 -0.035758 77 35 SH1070 1070 Gly3 3' flank 24.732505 97.211783 60.972144 1.785131467 -0.03581 209 70 SH19091 19091 YOR312C_15_901173_900242_INTRON_2_427 exon/intron 23.797833 112.93988 23.797833 90.142047 56.96994 1.755645762 -0.035818 214 3 SH938 938 Gly1 5' flank 25.727675 102.721635 64.224655 1.80770178 -0.035826 78 19 SH3503 3503 Tyr1 tRNA 56 68 31.895249 116.3904 74.1428245 1.870069127 -0.035831 127 53 SH14366 14366 MT ORF9 and ORF10 (hypothetical) ORF9 / intergenic 22.359771 100.963465 22.359771 79.603694 50.9817325 1.70741459 -0.035832 200 5 SH18339 18339 YML124C_13_23684_22049_INTRON_26_323 intron 186.603582 529.09113 186.603582 343.487548 265.045565 2.423320542 -0.035832 95 39 SH21536 21536 copy of SH3942 23.882261 90.77183 57.3270455 1.75835956 -0.035838 172 17 SH2378 2378 Phe4 5' flank 21.956381 76.882373 49.419377 1.693897266 -0.035841 144 101 SH19985 19985 YBL091C-A spliced 25.403377 101.091452 63.2474145 1.801042777 -0.035872 187 60 SH20374 20374 YER179W spliced 26.632607 107.061791 66.847199 1.825083214 -0.03588 41 13 SH3661 3661 Val2 tRNA 46 58 28.339543 110.657482 69.4985125 1.841975509 -0.035899 80 29 SH12194 12194 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7856 7874 22.88041 83.283799 53.0821045 1.724948133 -0.035905 83 24 SH5772 5772 snR35 snR35 46 63 23.891896 90.851238 57.371567 1.758696712 -0.03592 70 26 SH3721 3721 Val3 3' flank 22.536376 80.818432 51.677404 1.713300689 -0.03594 196 51 SH10240 10240 RUF6 1046-1051 + 3' 1046 24.136863 92.688765 58.412814 1.766508129 -0.035947 5 13 SH16550 16550 YER133W_5_432491_433954_INTRON_178_702 intron 22.838546 104.820556 22.838546 82.98201 52.910278 1.723540043 -0.035968 162 83 SH18725 18725 YNL147W_14_350937_351380_INTRON_19_138 exon/intron 26.897236 133.528412 26.897236 107.631176 67.264206 1.82778402 -0.035971 128 35 SH12250 12250 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.98571 133.805654 26.98571 107.819944 67.402827 1.828678112 -0.035984 19 37 SH3802 3802 RNaseP 5' flank 50.546846 143.872979 97.2099125 1.987710552 -0.035988 110 13 SH10134 10134 RUF6 RUF6 516 530 27.612459 109.145283 68.378871 1.834921926 -0.036006 120 68 SH4105 4105 SRP RNA SRP RNA 416 428 27.790377 109.519643 68.65501 1.836672235 -0.036025 25 71 SH12809 12809 MT COX1 COX1ai1 22.876409 105.141354 22.876409 83.264945 53.070677 1.724854628 -0.036026 135 86 SH16905 16905 YGL232W_7_62074_63001_INTRON_58_115 5' exon 25.402947 125.506899 25.402947 101.103952 63.2534495 1.801084215 -0.036056 37 39 SH8120 8120 snoRNA cluster 3; snR41 22.654921 103.303203 22.654921 81.648282 52.1516015 1.71726765 -0.036057 82 89 SH13581 13581 MT COX1 Exon 6 22.124096 99.152385 22.124096 78.028289 50.0761925 1.6996313 -0.036091 75 38 SH19094 19094 YOR312C_15_901173_900242_INTRON_2_427 intron 25.546994 126.379064 25.546994 101.83207 63.689532 1.804068058 -0.036094 64 70 SH5414 5414 snR31 snR31 136 152 69.416449 171.493527 120.454988 2.080824789 -0.036103 57 26 SH19361 19361 YPR028W_16_623522_624197_INTRON_52_184 5' exon 23.911225 113.924147 23.911225 91.012922 57.4620735 1.759381293 -0.036108 92 20 SH13416 13416 MT COX1 intronic 22.055786 98.627165 22.055786 77.571379 49.8135825 1.697347777 -0.036127 186 55 SH3880 3880 RNaseP 366-369 + 3' 366 52.336203 146.468194 99.4021985 1.99739599 -0.036134 44 76 SH10008 10008 RUF5-1 3' 26.295115 105.619602 65.9573585 1.819263254 -0.036142 2 78 SH1056 1056 Gly3 tRNA 16 33 34.460246 120.154132 77.307189 1.888219882 -0.036163 184 40 SH9787 9787 RUF4 RUF4 711 733 28.255431 110.498518 69.3769745 1.841215357 -0.036168 152 70 SH5046 5046 snR10 3' 37.248489 124.273402 80.7609455 1.907201395 -0.03617 2 57 SH2428 2428 Phe5 5' flank 23.318525 86.559239 54.938882 1.739879817 -0.03618 21 34 SH3778 3778 Val4 3' flank 31.178901 115.370138 73.2745195 1.864952979 -0.036181 194 66 SH6624 6624 snR48 5' 29.245633 112.489256 70.8674445 1.850446772 -0.036181 27 12 SH17029 17029 YGR183C_7_859471_859058_INTRON_4_216 5' exon 28.710167 139.151564 28.710167 111.441397 70.075782 1.845567953 -0.036186 121 12 SH2551 2551 Pro2 5' flank - tRNA7 7 73.023073 176.904237 124.963655 2.096783719 -0.036219 175 88 SH16321 16321 YDR471W_4_1401759_1402553_INTRON_32_415 intron 32.175164 147.990592 32.175164 116.815428 74.495296 1.87212885 -0.036231 182 66 SH10304 10304 RUF7 RUF7 131 147 25.937024 103.8127 64.874862 1.812076447 -0.036237 28 13 SH5199 5199 snR13 3' 24.289756 93.872344 59.08105 1.771448205 -0.036251 120 14 SH680 680 Gln3 5' flank 26.645252 107.110298 66.877775 1.825281816 -0.036258 34 88 SH16385 16385 YER007C-A_5_166884_166236_INTRON_12_114 intron/exon 25.179387 124.177099 25.179387 99.997712 62.5885495 1.796494887 -0.036274 137 88 SH17453 17453 YIL148W_9_68708_69528_INTRON_9_442 intron 23.151784 107.475142 23.151784 85.323358 54.237571 1.734300232 -0.036281 65 71 SH7659 7659 snoRNA cluster1 5' / snR78 23.43517 109.880461 23.43517 87.445291 55.4402305 1.743825027 -0.036287 24 32 SH1120 1120 Gly4 3' flank 22.795899 82.698088 52.7469935 1.722197711 -0.036299 51 15 SH16783 16783 YGL103W_7_310965_311925_INTRON_50_560 intron 24.745997 121.111932 24.745997 97.365935 61.055966 1.785728107 -0.036312 171 84 SH7037 7037 snR62 5' 30.382656 114.209374 72.296015 1.859114359 -0.036404 150 35 SH19934 19934 YBL026W spliced 27.650353 109.24847 68.4494115 1.835369719 -0.036413 126 17 SH13144 13144 MT COX1 intronic 25.059652 123.468734 25.059652 99.409082 62.234367 1.794030277 -0.036428 127 48 SH16534 16534 YER131W_5_423587_424307_INTRON_1_361 intron 22.595893 102.863902 22.595893 81.268009 51.931951 1.715434639 -0.036442 186 42 SH15529 15529 YBR048W_2_332790_333771_INTRON_46_556 intron/exon 23.917121 114.005492 23.917121 91.088371 57.502746 1.759688585 -0.036445 111 72 SH20078 20078 YCR031C spliced 23.573004 88.506774 56.039889 1.748497266 -0.036505 187 29 SH21073 21073 YMR225C spliced 26.407516 106.225456 66.316486 1.821621506 -0.036561 28 98 SH3212 3212 Thr1 5' flank 28.625118 111.287979 69.9565485 1.844828374 -0.036562 133 78 SH1181 1181 His1 3' flank 25.470608 101.487256 63.478932 1.802629611 -0.036594 117 34 SH21588 21588 copy of SH6045 48.850755 141.427545 95.13915 1.978359267 -0.036602 95 104 SH3053 3053 Ser3 5' flank 23.797551 90.212902 57.0052265 1.755914676 -0.036607 8 28 SH18020 18020 YLR306W_12_744151_744851_INTRON_4_137 intron 23.819134 113.193661 23.819134 90.374527 57.0968305 1.756612001 -0.03662 76 95 SH1820 1820 Leu8 3' flank 22.48143 80.497588 51.489509 1.71171875 -0.036621 58 8 SH19730 19730 Negative Control 27.726003 109.419677 68.57284 1.836152136 -0.036627 205 75 SH14021 14021 MT COB Exon4 23.974442 114.513193 23.974442 91.538751 57.7565965 1.761601593 -0.036679 166 86 SH15627 15627 YBR181C_2_592732_591670_INTRON_7_358 intron 529.192636 1359.557865 529.192636 831.365229 680.2789325 2.832687022 -0.036706 49 13 SH8097 8097 snoRNA cluster 2 3' 24.55318 119.477572 24.55318 95.924392 60.238786 1.779876211 -0.036719 169 43 SH1699 1699 Leu6 tRNA 61 73 26.738373 107.335558 67.0369655 1.826314347 -0.036722 179 17 SH7578 7578 snR189 5' 22.861641 83.217513 53.039577 1.724600052 -0.036727 162 36 SH2113 2113 Met1 5' flank 24.260824 93.699836 58.98033 1.770707198 -0.036735 57 84 SH8931 8931 snR17a / U3a 5' 26.087713 104.616814 65.3522635 1.815260634 -0.03674 80 93 SH16348 16348 YDR500C_4_1450856_1450201_INTRON_8_396 intron 55.761976 206.29284 55.761976 151.530864 103.64642 2.015554306 -0.036742 77 96 SH21665 21665 copy of SH9400 24.221276 93.402317 58.8117965 1.769464446 -0.036752 89 58 SH7058 7058 snR62 snR62 81 98 26.306045 105.727281 66.016663 1.819653568 -0.036771 142 9 SH18114 18114 YLR367W_12_855877_857316_INTRON_698_1180 intron 24.249411 116.866351 24.249411 93.61694 58.9331755 1.770359843 -0.036771 166 93 SH17058 17058 YGR214W_7_920570_921783_INTRON_91_545 intron 47.565531 186.10668 47.565531 139.541149 93.55334 1.971059297 -0.036799 128 58 SH15573 15573 YBR084C-A_2_415219_414144_INTRON_3_508 intron 22.427117 101.568065 22.427117 80.140948 51.2840325 1.709982167 -0.036802 122 52 SH9703 9703 RUF4 RUF4 291 308 25.452369 101.412555 63.432462 1.802311568 -0.03681 140 102 SH9588 9588 RUF3 RUF3 326 347 22.596361 81.302139 51.94925 1.715579282 -0.036819 108 21 SH245 245 Arg3 3' flank 23.02335 84.418963 53.7211565 1.730145354 -0.036829 146 83 SH15191 15191 MT COX3 cox3 22.990512 106.17088 22.990512 84.180368 53.58544 1.729046801 -0.036877 178 58 SH17273 17273 YHR123W_8_354817_356083_INTRON_51_141 3' exon 26.495613 132.1985 26.495613 106.702887 66.59925 1.823469338 -0.036911 170 18 SH3641 3641 Val2 5' flank 23.680745 89.36367 56.5222075 1.752219115 -0.036916 144 32 SH7577 7577 snR189 5' 25.62714 102.30293 63.965035 1.805942642 -0.036927 197 81 SH21215 21215 YOR122C spliced 23.822168 90.427915 57.1250415 1.756826529 -0.036952 50 78 SH9998 9998 RUF5-1 3' 23.349744 86.865537 55.1076405 1.741211817 -0.036975 41 104 SH18884 18884 YOL047C_15_242745_241612_INTRON_244_306 exon/intron 27.873649 136.624667 27.873649 109.751018 68.8123335 1.837666285 -0.037004 154 63 SH13759 13759 MT COB intronic 22.766913 104.315865 22.766913 82.548952 52.6579325 1.721463803 -0.037029 154 28 SH15039 15039 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.177291 124.225211 25.177291 100.04792 62.6126055 1.796661776 -0.037047 197 59 SH15774 15774 YDL012C_4_431513_431104_INTRON_46_131 5' exon 26.344874 131.296613 26.344874 105.951739 66.1483065 1.82051873 -0.037098 64 41 SH8285 8285 snoRNA cluster4 intergenic 40.206653 167.94738 40.206653 128.740727 84.47369 1.926721466 -0.037099 210 69 SH16719 16719 YGL031C_7_438393_437938_INTRON_1_456 3' exon 22.979204 106.096477 22.979204 84.117273 53.5482385 1.728745189 -0.03711 155 71 SH6657 6657 snR48 111-113 + 3' 111 24.707126 97.147727 60.9274265 1.784812834 -0.037129 50 3 SH12812 12812 MT COX1 COX1ai1 27.920547 136.778216 27.920547 109.857669 68.889108 1.838150561 -0.03715 62 4 SH12005 12005 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6911 6934 22.994381 84.233436 53.6139085 1.729277469 -0.037155 22 66 SH2021 2021 Lys3 tRNA-intron/exon 51 67 82.243788 190.692454 136.468121 2.135031212 -0.037156 47 81 SH19269 19269 YPL143W_16_282121_282969_INTRON_20_544 intron 25.564164 126.570155 25.564164 102.005991 63.7850775 1.804719088 -0.037186 62 104 SH16525 16525 YER131W_5_423587_424307_INTRON_1_361 intron 24.082257 115.478296 24.082257 92.396039 58.239148 1.765215013 -0.037192 29 61 SH15038 15038 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.632761 103.216859 22.632761 81.584098 52.1084295 1.716907984 -0.037194 186 75 SH9717 9717 RUF4 RUF4 361 377 27.580966 109.148501 68.3647335 1.834832125 -0.037205 160 12 SH8751 8751 LSR1 / U2 RNA U2 396 410 24.750878 97.49575 61.123314 1.786206893 -0.037234 41 33 SH8957 8957 snR17a / U3a U3a 71 88 29.667415 113.185032 71.4262235 1.853857688 -0.037235 168 23 SH1194 1194 Ile1 5' flank 31.860988 116.420719 74.1408535 1.870057581 -0.037248 31 20 SH5479 5479 snR32 snR32 56 72 101.331969 219.31264 160.3223045 2.204993947 -0.037261 131 26 SH5602 5602 snR34 5' 23.701176 89.552762 56.626969 1.753023316 -0.037273 196 91 SH1667 1667 Leu6 5' flank 25.989605 104.164195 65.0769 1.813426857 -0.037283 24 68 SH19921 19921 YAL030W spliced 24.7259 97.308697 61.0172985 1.785452976 -0.037292 100 22 SH6547 6547 snR46 3' 25.578594 102.088195 63.8333945 1.80504794 -0.037304 130 4 SH14085 14085 MT COB Cytbi4 22.235248 100.113287 22.235248 78.878039 50.5566435 1.703778233 -0.037334 65 25 SH16661 16661 YFR032C-A_6_223758_223245_INTRON_1_331 intron 37.246331 160.592089 37.246331 124.345758 80.7960445 1.9073901 -0.037379 74 104 SH15043 15043 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.334866 125.202292 25.334866 100.867426 63.101146 1.800037247 -0.037394 38 46 SH7301 7301 snR66 5' - 17 -4 17 34.420573 120.169614 77.2950935 1.888151927 -0.037396 16 84 SH1183 1183 His1 3' flank 25.041856 99.3973 62.219578 1.793927061 -0.037421 157 59 SH6796 6796 snR50 3' 22.747964 82.444849 52.5964065 1.720956073 -0.037429 23 71 SH1128 1128 Gly4 3' flank 24.79014 97.82075 61.305445 1.787499049 -0.03745 132 36 SH7682 7682 snoRNA cluster1 intergenic 84.528538 277.692684 84.528538 194.164146 139.346342 2.144095572 -0.037453 111 55 SH15316 15316 YAL003W_1_142172_143158_INTRON_81_446 intron 38.635121 164.059634 38.635121 126.424513 82.529817 1.916610882 -0.037459 14 53 SH12888 12888 MT COX1 COX1ai1 27.048053 134.085761 27.048053 108.037708 67.5428805 1.829579578 -0.037474 164 53 SH17000 17000 YGR118W_7_726968_727725_INTRON_66_385 intron 22.305715 100.674611 22.305715 79.368896 50.8373055 1.706182524 -0.037489 78 45 SH18906 18906 YOL120C_15_94401_93394_INTRON_113_559 intron 53.341192 200.393232 53.341192 148.05204 100.696616 2.003014876 -0.037499 96 72 SH19905 19905 YAL001C spliced 38.291263 125.917532 82.1043975 1.914366418 -0.037501 20 21 SH311 311 Arg4 3' flank 34.757062 120.659253 77.7081575 1.890466612 -0.037513 141 17 SH12559 12559 MT_15S MT_15S 178.986019 510.78883 178.986019 332.802811 255.894415 2.408060807 -0.037516 66 91 SH12957 12957 MT COX1 COX1ai2 22.126935 99.287427 22.126935 78.160492 50.1437135 1.700216493 -0.037526 150 2 SH16393 16393 YER044C-A_5_239773_238459_INTRON_64_151 intron 24.781439 121.543881 24.781439 97.762442 61.2719405 1.787261635 -0.037539 42 96 SH11232 11232 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3046 3067 18170.40038 18809.12684 18489.76361 4.266931359 -0.037565 102 33 SH3919 3919 RNase MRP RNaseMRP 11 28 31.50933 115.9314 73.720365 1.867587477 -0.037605 124 39 SH19016 19016 YOR182C_15_678792_678190_INTRON_4_414 intron 28.2709 137.887147 28.2709 110.616247 69.4435735 1.841632061 -0.037626 55 81 SH2088 2088 Lys4 3' flank 22.719435 82.254266 52.4868505 1.720050513 -0.037638 64 96 SH12652 12652 MT_15S MT_15S 23.162412 107.6863 23.162412 85.523888 54.34315 1.735144809 -0.037639 91 87 SH13539 13539 MT COX1 intronic 24.275174 117.171461 24.275174 93.896287 59.0857305 1.771482609 -0.037647 86 87 SH5804 5804 snR35 snR35 206 223 53.634271 148.497098 101.0656845 2.004603722 -0.037658 105 12 SH9201 9201 snR7 U5 RNA 3' 24.318492 94.226959 59.2727255 1.772854898 -0.037667 105 54 SH3140 3140 Ser4 3' flank 21.812355 76.064387 48.938371 1.689649509 -0.037706 26 29 SH7445 7445 snR69 3' 22.537222 80.968681 51.7529515 1.713935123 -0.037709 130 47 SH3967 3967 RNase MRP RNaseMRP 251 270 27.0995 108.16046 67.62998 1.830139259 -0.03771 104 53 SH4718 4718 snR4 snR4 126 138 31.977188 116.614402 74.295795 1.870964234 -0.037712 183 10 SH10442 10442 RUF8 RUF8 136 152 25.978827 104.147902 65.0633645 1.813336517 -0.037752 153 74 SH20448 20448 YGL103W spliced 42.785448 132.588706 87.687077 1.942935593 -0.037756 26 34 SH7628 7628 snR189 3' 23.025871 84.522498 53.7741845 1.730573833 -0.037789 23 92 SH7834 7834 snoRNA cluster1 snR74 53.496424 200.802306 53.496424 148.305882 100.901153 2.003896129 -0.037812 21 9 SH21140 21140 YNL162W spliced 30.014367 113.738025 71.876196 1.856585084 -0.037815 91 46 SH9118 9118 snR14 / U4 RNA 3' 24.794761 97.895426 61.3450935 1.787779833 -0.037837 66 6 SH5451 5451 snR32 5' 24.008261 91.901854 57.9550575 1.763091341 -0.037844 89 12 SH10506 10506 RUF8 RUF8 456 475 23.769095 90.116539 56.942817 1.755438948 -0.037851 98 70 SH15628 15628 YBR181C_2_592732_591670_INTRON_7_358 intron 24.654979 120.474311 24.654979 96.819332 60.7371555 1.783454449 -0.037865 57 68 SH21364 21364 Ile2_3 spliced 24.73574 97.443859 61.0897995 1.7859687 -0.037884 3 46 SH19219 19219 YPL081W_16_404945_406039_INTRON_8_508 intron/exon 30.924511 145.017297 30.924511 115.092786 73.0086485 1.863374309 -0.037897 11 75 SH4366 4366 telomerase RNA telomerase 866 883 29.49641 112.963771 71.2300905 1.852663496 -0.037911 192 39 SH2787 2787 Pro6 tRNA-exon/intron 26 38 24.098002 92.583765 58.3408835 1.765973002 -0.037921 61 84 SH14343 14343 MT VAR1 includes 5’ processing site VAR1/3' 23.879209 113.82257 23.879209 90.943361 57.411285 1.758997268 -0.037923 81 5 SH13210 13210 MT COX1 COX1-ai4 23.349013 109.295347 23.349013 86.946334 55.1476735 1.741527196 -0.037924 66 78 SH11301 11301 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3391 3409 25.889793 103.711574 64.8006835 1.811579587 -0.037931 210 95 SH692 692 Gln3 5' flank - tRNA5 5' flank 5 40.864486 129.778459 85.3214725 1.931058342 -0.037939 2 51 SH7739 7739 snoRNA cluster1 intergenic 23.965205 114.555041 23.965205 91.589836 57.7775205 1.7617589 -0.037959 39 53 SH8417 8417 snoRNA cluster 5 snR190 22.529536 102.46634 22.529536 80.936804 51.73317 1.713769091 -0.037965 30 43 SH1532 1532 Leu3 3' flank 26.661356 107.24243 66.951893 1.825762861 -0.037976 13 34 SH16328 16328 YDR471W_4_1401759_1402553_INTRON_32_415 intron 22.914783 105.633094 22.914783 83.718311 53.316547 1.726862015 -0.037982 46 50 SH12650 12650 MT_15S MT_15S 37.263756 160.674635 37.263756 124.410879 80.8373175 1.907611893 -0.038 12 13 SH18829 18829 YNL302C_14_62942_61957_INTRON_21_571 intron 29.720421 142.031143 29.720421 113.310722 71.5155715 1.854400614 -0.038072 172 79 SH20691 20691 YIL133C spliced 153.609814 295.965219 224.7875165 2.351772189 -0.038078 167 13 SH12121 12121 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7491 7513 24.242519 93.690396 58.9664575 1.770605038 -0.038079 159 35 SH9917 9917 RUF5-1 RUF5-1 391 408 22.397398 80.041456 51.219427 1.709434716 -0.038082 58 33 SH2214 2214 Phe1 5' flank 25.353429 101.015769 63.184599 1.800611234 -0.038087 117 87 SH9337 9337 RUF1 RUF1 261 277 24.118338 92.755032 58.436685 1.766685571 -0.038111 158 23 SH4878 4878 snR8 snR8 171 183 32.80085 117.848398 75.324624 1.876936972 -0.038131 115 7 SH19809 19809 Negative Control 31.137352 115.418518 73.277935 1.864973222 -0.038138 211 31 SH9484 9484 RUF2 261-268 + 3' 261 23.335081 86.863791 55.099436 1.741147153 -0.038168 211 100 SH20639 20639 YHR141C spliced 32.121687 116.849138 74.4854125 1.872071227 -0.038187 212 3 SH13281 13281 MT COX1 Exon 5a 25.783488 127.979081 25.783488 103.195593 64.4895405 1.809489283 -0.038202 22 56 SH18262 18262 YML056C_13_164176_162194_INTRON_461_868 intron 28.218388 137.761745 28.218388 110.543357 69.3808725 1.841239757 -0.038246 38 70 SH9518 9518 RUF3 5' 25.488622 101.710465 63.5995435 1.803453998 -0.038256 103 90 SH15813 15813 YDL061C_4_341182_340627_INTRON_1_408 intron 25.016276 123.35461 25.016276 99.338334 62.177305 1.793631894 -0.038311 124 8 SH17263 17263 YHR101C_8_315970_314876_INTRON_111_197 3' exon 25.838035 128.319932 25.838035 103.481897 64.659966 1.810635472 -0.038329 56 17 SH12427 12427 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 22.76204 104.389568 22.76204 82.627528 52.694784 1.721767629 -0.038351 22 99 SH4005 4005 SRP RNA 5' 24.401245 94.924305 59.662775 1.775703449 -0.038363 48 43 SH10640 10640 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 86 99 2589.854417 3402.909047 2996.381732 3.476597141 -0.038381 192 97 SH15489 15489 YBL092W_2_45639_46364_INTRON_1_333 intron 25.465109 126.068119 25.465109 101.60301 63.5340595 1.803006605 -0.038395 135 73 SH16025 16025 YDL189W_4_122079_123590_INTRON_1_99 3' exon 335.626887 894.892954 335.626887 560.266067 447.946477 2.651226125 -0.038396 122 55 SH8516 8516 snR19 / U1 RNA U1 76 98 21.71641 75.482366 48.599388 1.6866308 -0.038443 15 46 SH10804 10804 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 906 922 6522.952962 7649.117592 7086.035277 3.85040331 -0.038456 45 40 SH19119 19119 YPL031C_16_493033_492014_INTRON_18_119 intron 24.983686 123.171644 24.983686 99.187958 62.085822 1.792992435 -0.03848 28 6 SH7552 7552 snR79 3' 26.014208 104.386901 65.2005545 1.814251289 -0.038481 87 63 SH2489 2489 Pro1 5' flank 151.603372 293.115966 222.359669 2.347056019 -0.038501 76 50 SH3215 3215 Thr1 5' flank 25.624284 102.415419 64.0198515 1.806314662 -0.038508 209 81 SH15486 15486 YBL092W_2_45639_46364_INTRON_1_333 intron 26.247597 130.823641 26.247597 105.576044 65.9118205 1.818963307 -0.03853 186 69 SH18620 18620 YNL096C_14_444312_443395_INTRON_145_489 5' exon 25.637611 127.122858 25.637611 102.485247 64.061429 1.806596622 -0.038539 24 6 SH5958 5958 snR36 snR36 246 263 46.884811 138.685029 92.78492 1.967477398 -0.038571 161 66 SH1386 1386 Leu1 tRNA 1 13 553.066145 865.161132 709.1136385 2.850715838 -0.038571 40 40 SH14449 14449 MT 21S rRNA 21S rRNA3 26.943577 133.822473 26.943577 107.878896 67.4112365 1.828732293 -0.038578 12 59 SH21329 21329 YPR043W spliced 34.892703 120.917927 77.905315 1.891567088 -0.038608 31 26 SH8796 8796 LSR1 / U2 RNA U2 621 639 24.398489 94.928276 59.6633825 1.775707871 -0.03862 115 32 SH16508 16508 YER117W_5_396765_397649_INTRON_43_513 intron 22.569121 102.831904 22.569121 81.262783 51.915952 1.715300822 -0.038624 126 12 SH3276 3276 Thr2 5' flank 27.081709 108.176034 67.6288715 1.830132141 -0.038639 145 43 SH9541 9541 RUF3 RUF3 91 107 24.567336 96.223967 60.3956515 1.78100567 -0.038657 152 35 SH9311 9311 RUF1 RUF1 131 147 25.349551 101.041952 63.1957515 1.800687883 -0.038664 76 21 SH13050 13050 MT COX1 COX1ai2 23.669336 112.109991 23.669336 89.440655 56.5549955 1.752470972 -0.038669 146 23 SH13195 13195 MT COX1 Exon4 22.992113 106.342363 22.992113 84.35025 53.6711815 1.729741156 -0.03867 60 21 SH5219 5219 snR30 5' 21.795816 76.030155 48.9129855 1.689424172 -0.038696 120 24 SH11278 11278 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3276 3296 22.365591 79.876382 51.1209865 1.708599226 -0.038728 43 65 SH21291 21291 YPL175W spliced 25.266939 100.63358 62.9502595 1.798997525 -0.038761 110 85 SH920 920 Glu3 3' flank 23.37472 87.217127 55.2959235 1.742693116 -0.038773 74 81 SH14971 14971 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 22.473332 102.091364 22.473332 80.618032 51.545682 1.71219229 -0.038785 92 35 SH7065 7065 snR62 3' 165.200742 312.978046 239.089394 2.378560311 -0.038793 82 87 SH13560 13560 MT COX1 Exon 6 24.002862 114.955745 24.002862 91.952883 57.9778725 1.763262275 -0.038815 14 42 SH17884 17884 YLR048W_12_242233_243350_INTRON_91_449 intron 23.208961 108.188214 23.208961 85.979253 54.594107 1.737145767 -0.038841 18 79 SH21199 21199 YOL121C spliced 34.701874 120.659813 77.6808435 1.890313933 -0.03886 13 98 SH7785 7785 snoRNA cluster1 intergenic/snR75 24.91452 122.787202 24.91452 98.872682 61.893601 1.791645751 -0.038888 92 23 SH3742 3742 Val4 5' flank 23.390474 87.34844 55.369457 1.743270264 -0.038911 95 43 SH12519 12519 MT_ORF6 + ORF7 (hypothetical) ORF6/7 21.886217 97.536754 21.886217 76.650537 49.268377 1.692568256 -0.038911 64 9 SH20943 20943 YLR426W spliced 24.605883 96.550449 60.578166 1.782316121 -0.038963 107 76 SH2372 2372 Phe4 5' flank 22.11195 78.17314 50.142545 1.700206373 -0.038969 154 87 SH19661 19661 SIR1 2.2 27.866723 109.852804 68.8597635 1.837965527 -0.038999 118 24 SH4916 4916 snR9 5' - 2 2 26.1657 105.200209 65.6829545 1.81745268 -0.039019 187 30 SH3252 3252 Thr1 3' flank 24.261435 93.925496 59.0934655 1.77153946 -0.039031 199 60 SH276 276 Arg4 5' flank 24.240176 93.764437 59.0023065 1.770868989 -0.039034 165 66 SH10490 10490 RUF8 RUF8 376 393 27.261782 108.581308 67.921545 1.832007556 -0.039047 66 61 SH11549 11549 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4631 4648 358.559813 593.489292 476.0245525 2.677629353 -0.039064 99 89 SH8073 8073 snoRNA cluster 2 snR61 51.400134 195.744921 51.400134 145.344787 98.3724605 1.992873534 -0.039065 174 67 SH13247 13247 MT COX1 COX1-ai4 24.037792 115.276786 24.037792 92.238994 58.138393 1.764463023 -0.039065 123 31 SH15193 15193 MT COX3 cox3 26.666881 132.984877 26.666881 107.317996 66.9924385 1.826025786 -0.039095 201 70 SH9443 9443 RUF2 RUF2 56 70 26.802379 107.608495 67.205437 1.827404409 -0.039112 190 48 SH14930 14930 MT tRNA Asn 5' / tRNA 23.930657 114.372153 23.930657 91.441496 57.6860765 1.761071002 -0.039135 52 59 SH8077 8077 snoRNA cluster 2 snR61/3' 25.473603 126.182202 25.473603 101.708599 63.591101 1.803396344 -0.039182 149 56 SH691 691 Gln3 5' flank - tRNA2 5' flank 2 26.992057 108.016843 67.50445 1.829332403 -0.039185 147 68 SH21323 21323 YPR028W spliced 26.755751 107.513921 67.134836 1.826947932 -0.0392 81 28 SH20515 20515 YGR029W spliced 27.902189 109.939453 68.920821 1.838350442 -0.039211 171 82 SH11591 11591 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4841 4854 26.401066 106.415883 66.4084745 1.822223504 -0.039237 45 67 SH21693 21693 copy of SH10453 26.715805 107.431271 67.073538 1.826551215 -0.039247 21 69 SH21743 21743 copy of SH12553 24.6715 97.084643 60.8780715 1.784460886 -0.039253 129 53 SH11644 11644 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5106 5119 25008.32121 24940.91638 24974.6188 4.397498868 -0.039273 42 40 SH352 352 Arg5 3' flank 2486.98052 3285.908154 2886.444337 3.460363187 -0.039295 51 58 SH14165 14165 MT COB intronic 27.939244 136.961219 27.939244 110.021975 68.9806095 1.838727027 -0.039296 157 21 SH5813 5813 snR35 snR35 251 268 22.27164 79.282438 50.777039 1.705667372 -0.039304 159 17 SH3047 3047 Ser3 5' flank 32.30941 117.185043 74.7472265 1.873595083 -0.039309 93 51 SH18811 18811 YNL302C_14_62942_61957_INTRON_21_571 exon/intron 24.014182 115.100522 24.014182 92.08634 58.050261 1.763804177 -0.039328 77 100 SH9564 9564 RUF3 RUF3 206 225 22.043015 77.738166 49.8905905 1.698018644 -0.039353 16 20 SH15120 15120 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 3' 23.0205 106.641968 23.0205 84.621468 53.820984 1.730951634 -0.039358 55 33 SH10146 10146 RUF6 RUF6 576 593 28.902824 112.028968 70.465896 1.847978979 -0.039395 146 104 SH3630 3630 Val1 3' flank 25.774951 103.249859 64.512405 1.809643233 -0.039406 134 56 SH8519 8519 snR19 / U1 RNA U1 91 109 25.923989 104.005526 64.9647575 1.812677822 -0.039412 139 29 SH19886 19886 Positive Control 2 73.899428 178.519017 126.2092225 2.101091091 -0.039416 195 75 SH21931 21931 copy of SH21371 225.162047 400.084465 312.623256 2.495021282 -0.039424 67 83 SH13395 13395 MT COX1 intronic 22.32772 101.004908 22.32772 79.677188 51.002454 1.707591073 -0.039463 115 35 SH15524 15524 YBR048W_2_332790_333771_INTRON_46_556 intron 28.068589 137.37112 28.068589 110.302531 69.18556 1.840015461 -0.039468 147 59 SH11470 11470 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4236 4249 151.241518 292.761868 222.001693 2.346356286 -0.039481 11 65 SH16281 16281 YDR447C_4_1355542_1354818_INTRON_4_317 intron 745.642991 1870.635538 745.642991 1125.992547 935.817769 2.971191287 -0.039506 105 63 SH7936 7936 snoRNA cluster1 3' 22.948638 106.052489 22.948638 84.103851 53.5262445 1.728566774 -0.039526 25 29 SH1920 1920 Lys1 tRNA 56 68 28.684292 111.586199 70.1352455 1.845936322 -0.039535 70 98 SH20791 20791 YKL156W spliced 33.062327 118.316775 75.689551 1.879035929 -0.039549 62 63 SH17153 17153 YHR012W_8_129473_130440_INTRON_49_167 intron 23.697136 112.43263 23.697136 89.735494 56.716315 1.753708006 -0.03955 114 38 SH16533 16533 YER131W_5_423587_424307_INTRON_1_361 intron 205.223447 575.492785 205.223447 371.269338 288.2463925 2.459763881 -0.039576 27 86 SH6339 6339 snR43 5' 25.478914 101.768524 63.623719 1.803619051 -0.039597 12 41 SH814 814 Glu1 3' flank 24.299716 94.272894 59.286305 1.772954384 -0.039618 69 45 SH6842 6842 snR52 3' 33.254366 118.605501 75.9299335 1.88041302 -0.039652 139 55 SH12380 12380 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.800206 149.735931 32.800206 117.935725 75.3679655 1.877186792 -0.039661 107 69 SH14068 14068 MT COB Cytbi4 26.243036 130.891498 26.243036 105.648462 65.945749 1.819186805 -0.039684 132 73 SH575 575 Gln1 5' flank 28.165075 110.516809 69.340942 1.840989737 -0.039687 77 33 SH12790 12790 MT COX1 COX1ai1 27.770059 136.460629 27.770059 109.69057 68.7303145 1.837148331 -0.039695 66 9 SH14957 14957 MT tRNA Met 3' 26.061694 129.791765 26.061694 104.730071 65.3958825 1.815550405 -0.039726 122 54 SH19589 19589 AEP2/ATP13 2.1 23.569505 88.779847 56.174676 1.749540576 -0.039736 189 53 SH13663 13663 MT ATP6 ATP6 23.463901 110.444665 23.463901 87.980764 55.7223325 1.746029287 -0.039758 111 9 SH11105 11105 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2411 2426 35.79977 122.289865 79.0448175 1.897873401 -0.039812 87 48 SH2119 2119 Met1 5' flank 25.610485 102.451247 64.030866 1.806389376 -0.039821 167 48 SH2759 2759 Pro5 3' flank 24.384096 94.935997 59.6600465 1.775683588 -0.039827 176 104 SH3010 3010 Ser2 tRNA 11 25 3706.09329 4663.533939 4184.813615 3.62167612 -0.03983 205 25 SH1795 1795 Leu8 tRNA 1 13 36397.12512 34712.74505 35554.93509 4.55089989 -0.039851 96 79 SH11823 11823 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6001 6016 30.362465 114.370199 72.366332 1.85953656 -0.039857 122 103 SH14493 14493 MT 21S rRNA 21S rRNA3 26.190777 130.588504 26.190777 105.397727 65.794252 1.818187954 -0.039867 58 57 SH17541 17541 YJL177W_10_90783_91654_INTRON_310_626 intron 82.238733 272.217325 82.238733 190.978592 136.6086625 2.135478239 -0.039875 62 87 SH2503 2503 Pro1 tRNA 6 22 870.373023 1291.72166 1081.047342 3.033844713 -0.039899 208 29 SH19371 19371 YPR043W_16_654161_654842_INTRON_3_405 5' exon 25.489721 126.337941 25.489721 101.84822 63.6689705 1.803927828 -0.039911 35 66 SH2062 2062 Lys4 5' flank 29.8274 113.57287 71.700135 1.855519973 -0.039915 13 77 SH18248 18248 YML034W_13_209525_212155_INTRON_1921_2046 intron 24.93901 123.014836 24.93901 99.075826 62.007418 1.792443648 -0.039921 116 28 SH1479 1479 Leu2 3' flank 26.396202 106.449901 66.4230515 1.822318823 -0.039941 131 97 SH20624 20624 YHR101C spliced 26.616961 107.261558 66.9392595 1.825680904 -0.039981 30 54 SH9865 9865 RUF5-1 RUF5-1 131 152 23.682813 89.666894 56.6748535 1.753390406 -0.039985 191 31 SH19834 19834 Negative Control 27.725712 109.614355 68.6700335 1.836767259 -0.039986 179 87 SH1759 1759 Leu7 3' flank 22.099923 78.172086 50.1360045 1.700149721 -0.039987 144 78 SH7107 7107 snR63 snR63 41 59 27.092047 108.276419 67.684233 1.830487512 -0.040004 85 42 SH1845 1845 Leu9 5' flank 26.647022 107.327957 66.9874895 1.825993702 -0.040016 164 80 SH6543 6543 snR46 3' 155.560031 299.156146 227.3580885 2.356710409 -0.040041 138 71 SH11203 11203 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2901 2918 86.75816 197.798442 142.278301 2.15313867 -0.04007 69 90 SH19360 19360 YPR028W_16_623522_624197_INTRON_52_184 5' exon 24.464024 119.036098 24.464024 95.572074 60.018049 1.778281874 -0.040083 34 18 SH14012 14012 MT COB intronic 23.956839 114.686778 23.956839 91.729939 57.843389 1.76225373 -0.040116 48 46 SH13654 13654 MT ATP6 ATP6 22.677416 103.838814 22.677416 82.161398 52.419407 1.719492104 -0.04013 39 28 SH17842 17842 YKR094C_11_618384_617630_INTRON_9_376 intron 23.439139 110.267935 23.439139 87.828796 55.6339675 1.745340032 -0.040143 206 15 SH20704 20704 YJL001W spliced 27.025421 108.1434 67.5844105 1.82984653 -0.040154 185 65 SH15472 15472 YBL091C-A_2_46858_46559_INTRON_35_122 5' exon 27.911896 136.926933 27.911896 110.015037 68.9634665 1.838619084 -0.040157 121 59 SH16768 16768 YGL103W_7_310965_311925_INTRON_50_560 exon/intron 28.874978 139.892585 28.874978 112.017607 70.4462925 1.847858142 -0.040169 92 21 SH14451 14451 MT 21S rRNA 21S rRNA3 1268.116545 3076.073635 1268.116545 1808.95709 1538.536818 3.187107893 -0.040182 204 70 SH54 54 Ala2 5' flank 22.706641 82.379965 52.543303 1.72051737 -0.040185 10 18 SH14169 14169 MT COB intronic 24.531145 119.628665 24.531145 96.09752 60.3143325 1.780420526 -0.040192 189 14 SH17935 17935 YLR093C_12_327416_326514_INTRON_17_157 intron 26.044705 129.728254 26.044705 104.683549 65.364127 1.815339465 -0.04021 99 82 SH2133 2133 Met1 tRNA 51 65 24.266416 94.077932 59.172174 1.772117526 -0.04022 43 11 SH12251 12251 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.447348 118.908604 24.447348 95.461256 59.954302 1.777820351 -0.040255 209 10 SH8945 8945 snR17a / U3a U3a 11 29 25.742301 103.155691 64.448996 1.809216156 -0.040285 209 5 SH15643 15643 YBR189W_2_604466_605466_INTRON_8_420 5' exon 94.365813 302.6107 94.365813 209.244887 151.80535 2.181287077 -0.040289 62 43 SH13787 13787 MT COB intronic 697.613363 1758.877142 697.613363 1062.263779 879.938571 2.944452355 -0.040294 202 37 SH8817 8817 LSR1 / U2 RNA U2 726 743 26.740848 107.545071 67.1429595 1.82700048 -0.040303 130 61 SH18165 18165 YLR448W_12_1028848_1029762_INTRON_16_399 intron 70.919061 244.083582 70.919061 174.164521 122.541791 2.088284223 -0.040308 127 97 SH13726 13726 MT COB 5'/Exon1 25.24408 124.885747 25.24408 100.641667 62.9428735 1.798946566 -0.040321 173 83 SH20263 20263 YDR397C spliced 30.243922 114.219356 72.231639 1.858727469 -0.040324 185 13 SH14666 14666 MT 21S rRNA 21S rRNA4 23.728021 112.768564 23.728021 90.040543 56.884282 1.754992281 -0.040334 62 5 SH14040 14040 MT COB Cytbi4 25.129521 124.196768 25.129521 100.067247 62.598384 1.796563122 -0.040353 143 104 SH89 89 Ala2 3' flank 22.941944 84.127372 53.534658 1.728635033 -0.040356 153 93 SH13780 13780 MT COB intronic 25.518691 126.551176 25.518691 102.032485 63.775588 1.804654471 -0.040385 113 32 SH7559 7559 snR79 3' 22.697018 82.327039 52.5120285 1.720258795 -0.040388 155 32 SH7113 7113 snR63 snR63 71 88 25.138152 100.114727 62.6264395 1.796757721 -0.040404 78 48 SH5511 5511 snR32 3' 23.593392 89.024462 56.308927 1.750577252 -0.040412 133 23 SH16213 16213 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 24.105509 115.983435 24.105509 92.877926 58.4917175 1.767094374 -0.040418 155 16 SH18798 18798 YNL301C_14_64561_63569_INTRON_113_544 intron 24.305486 117.699806 24.305486 94.39432 59.349903 1.773420013 -0.040419 189 79 SH13533 13533 MT COX1 intronic 72.154159 247.18043 72.154159 176.026271 124.090215 2.093737537 -0.040427 207 67 SH5501 5501 snR32 snR32 166 181 638.020858 982.03567 810.028264 2.908500173 -0.040488 92 59 SH17660 17660 YKL002W_11_437416_438182_INTRON_61_128 intron/exon 21.862518 97.476897 21.862518 76.614379 49.2384485 1.69230436 -0.040495 140 10 SH3366 3366 Thr4 5' flank 22.233487 79.122751 50.678119 1.704820487 -0.040554 32 95 SH8631 8631 snR19 / U1 RNA 651-668 + 3' 651 22.60817 81.696222 52.152196 1.7172726 -0.040604 74 53 SH9445 9445 RUF2 RUF2 66 78 38.416904 126.301186 82.359045 1.915711302 -0.040606 28 7 SH1324 1324 Ile3 tRNA 1 13 24.907534 98.971556 61.939545 1.791968011 -0.040614 116 76 SH13777 13777 MT COB intronic 24.324536 117.883153 24.324536 94.558617 59.4415765 1.774090319 -0.040617 183 3 SH19022 19022 YOR182C_15_678792_678190_INTRON_4_414 intron 26.371361 131.75279 26.371361 106.381429 66.376395 1.822013662 -0.040638 135 17 SH4033 4033 SRP RNA SRP RNA 56 75 24.3812 94.997048 59.689124 1.775895205 -0.04068 55 68 SH21789 21789 copy of SH14649 65.076281 165.540205 115.308243 2.061860355 -0.040737 11 45 SH5212 5212 snR30 5' 23.362539 87.306501 55.33452 1.742996147 -0.040758 84 30 SH10207 10207 RUF6 RUF6 881 898 24.093773 92.822839 58.458306 1.766846226 -0.04077 166 51 SH6551 6551 snR46 3' 22.304591 79.626551 50.965571 1.707276894 -0.040797 97 30 SH4165 4165 SRP RNA 3' 26.304724 106.055213 66.1799685 1.820726556 -0.040799 192 23 SH18622 18622 YNL096C_14_444312_443395_INTRON_145_489 intron 23.758914 113.072994 23.758914 90.31408 57.036497 1.756152845 -0.040804 56 49 SH19493 19493 YPT1 27.645244 109.492832 68.569038 1.836128057 -0.040807 147 67 SH13635 13635 MT ATP6 ATP6 24.711619 121.262776 24.711619 97.551157 61.131388 1.786264257 -0.040821 200 37 SH13136 13136 MT COX1 COX1ai3 24.42724 118.790772 24.42724 95.363532 59.895386 1.777393368 -0.040829 129 70 SH20740 20740 YJL191W spliced 25.30738 101.001985 63.1546825 1.800405556 -0.040842 104 13 SH14337 14337 MT VAR1 includes 5’ processing site VAR1 24.246224 117.235711 24.246224 93.989487 59.1178555 1.771718672 -0.040894 141 78 SH9185 9185 snR7 U5 RNA U5 196 212 410.95829 668.78374 539.871015 2.732290011 -0.040915 122 40 SH16718 16718 YGL031C_7_438393_437938_INTRON_1_456 intron/exon 46.547117 183.909248 46.547117 138.362131 92.454624 1.965928637 -0.040922 27 15 SH17872 17872 YLL050C_12_40413_39803_INTRON_15_193 3' exon 26.137911 130.354928 26.137911 105.217017 65.677464 1.817416375 -0.040934 97 15 SH13483 13483 MT COX1 intronic 24.09094 115.911289 24.09094 92.820349 58.4556445 1.766826453 -0.040969 30 66 SH16158 16158 YDR129C_4_715372_713333_INTRON_22_132 intron 27.302504 135.081003 27.302504 108.778499 68.0405015 1.832767506 -0.04097 144 59 SH21176 21176 YNR053C spliced 27.013047 108.163919 67.588483 1.829872699 -0.04097 69 51 SH19126 19126 YPL075W_16_412249_415357_INTRON_9_759 exon/intron 25.357585 125.623174 25.357585 101.265589 63.311587 1.8014832 -0.040971 103 36 SH2409 2409 Phe4 3' flank 21.604946 74.936161 48.2705535 1.683682279 -0.040992 153 61 SH14977 14977 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 22.880325 105.608679 22.880325 83.728354 53.3043395 1.726762566 -0.041001 188 60 SH3181 3181 Ser5 tRNA 26 42 24.735212 97.752364 61.243788 1.787062044 -0.041006 180 25 SH3303 3303 Thr2 3' flank 25.197501 100.461959 62.82973 1.798165193 -0.041018 91 68 SH5676 5676 snR34 snR34 301 320 25.33887 101.17568 63.257275 1.801110479 -0.041029 165 48 SH18600 18600 YNL069C_14_494998_493953_INTRON_29_477 intron 24.29938 117.707487 24.29938 94.408107 59.3537435 1.773448116 -0.041041 110 31 SH16601 16601 YFL034C-A_6_64931_64242_INTRON_13_333 3' exon 24.898664 122.858938 24.898664 98.960274 61.929469 1.791897356 -0.041042 187 69 SH15616 15616 YBR181C_2_592732_591670_INTRON_7_358 intron 25.618969 127.211507 25.618969 102.592538 64.1057535 1.806897009 -0.041044 106 88 SH3583 3583 Val1 5' flank 52.158656 146.591321 99.3749885 1.997277091 -0.041057 14 10 SH2838 2838 Pro7 5' flank - tRNA10 10 1544.032457 2158.952172 1851.492315 3.267521914 -0.041091 9 84 SH17819 17819 YKR057W_11_551293_551878_INTRON_25_346 intron 26.358416 131.713397 26.358416 106.354981 66.3566985 1.82188477 -0.041112 31 16 SH16208 16208 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 37.6785 161.909327 37.6785 125.230827 81.4546635 1.910915954 -0.041117 183 16 SH9916 9916 RUF5-1 RUF5-1 386 405 23.327649 87.07722 55.2024345 1.741958231 -0.041128 18 55 SH1187 1187 His1 3' flank 42.807471 132.850387 87.828929 1.943637587 -0.041157 112 82 SH8601 8601 snR19 / U1 RNA U1 501 520 23.32274 87.043095 55.1829175 1.741804658 -0.04116 151 12 SH9220 9220 snR6 / U6 RNA 5' 22.828961 83.363502 53.0962315 1.725063698 -0.041163 23 89 SH20002 20002 YBR078W spliced 24.762377 97.979852 61.3711145 1.78796401 -0.041175 31 40 SH18900 18900 YOL120C_15_94401_93394_INTRON_113_559 intron 24.656205 120.817492 24.656205 97.161287 60.908746 1.784679658 -0.041207 178 4 SH5147 5147 snR11 3' 23.727694 90.121676 56.924685 1.755300636 -0.041238 88 19 SH14931 14931 MT tRNA Asn 5' / tRNA 23.804811 113.503854 23.804811 90.699043 57.251927 1.757790109 -0.041263 167 74 SH12065 12065 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7211 7231 25.32452 101.122465 63.2234925 1.800878483 -0.041271 100 66 SH1456 1456 Leu2 tRNA-intron 51 65 28.500378 111.308525 69.9044515 1.844504832 -0.041283 165 62 SH7155 7155 snR63 3' 24.373997 95.008551 59.691274 1.775910848 -0.041363 117 91 SH16963 16963 YGR034W_7_555923_556666_INTRON_20_496 exon/intron 41.032931 170.290125 41.032931 130.257194 85.6450625 1.932702331 -0.041388 22 57 SH18219 18219 YML025C_13_225365_224406_INTRON_28_126 3' exon 48.415415 188.551642 48.415415 141.136227 94.775821 1.976697555 -0.04141 74 14 SH3985 3985 RNase MRP 3' 21.412297 73.710262 47.5612795 1.67725353 -0.04142 178 76 SH18362 18362 YMR033W_13_337787_339276_INTRON_31_116 3' exon 23.753289 113.086551 23.753289 90.333262 57.0432755 1.756204455 -0.041464 169 65 SH12116 12116 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7466 7484 26.129777 105.219465 65.674621 1.817397575 -0.041465 213 68 SH14072 14072 MT COB Cytbi4 25.371085 125.744455 25.371085 101.37337 63.3722275 1.801898973 -0.04147 40 18 SH10089 10089 RUF6 RUF6 291 307 23.442877 87.983752 55.7133145 1.745958996 -0.04152 198 89 SH18552 18552 YMR230W_13_732413_733140_INTRON_53_462 intron 28.288727 138.17252 28.288727 110.883793 69.58626 1.842523495 -0.041546 71 3 SH4464 4464 telomerase RNA 3' 32.313273 117.321234 74.8172535 1.874001761 -0.041582 76 39 SH2045 2045 Lys3 3' flank 25.588226 102.480668 64.034447 1.806413663 -0.041588 34 55 SH19695 19695 Negative Control 35.179843 121.504635 78.342239 1.893995979 -0.041597 123 40 SH19795 19795 Negative Control 33.63665 119.279389 76.4580195 1.883423044 -0.041603 206 76 SH4163 4163 SRP RNA 3' 25.97508 104.449464 65.212272 1.814329331 -0.041669 83 43 SH4003 4003 SRP RNA 5' 27.537327 109.31694 68.4271335 1.835228347 -0.041696 177 55 SH10705 10705 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 411 428 26.743959 107.635099 67.189529 1.827301597 -0.041763 25 81 SH1352 1352 Ile3 3' flank 22.985041 84.572858 53.7789495 1.730612315 -0.041783 139 100 SH6614 6614 snR47 3' 22.586211 81.642118 52.1141645 1.71695578 -0.041806 23 97 SH20347 20347 YER102W spliced 34.643802 120.750717 77.6972595 1.890405701 -0.041809 89 19 SH4260 4260 telomerase RNA telomerase 336 354 25.842118 103.785572 64.813845 1.811667786 -0.041809 171 66 SH21004 21004 YML094W spliced 28.082142 110.468045 69.2750935 1.840577121 -0.041809 106 20 SH16491 16491 YER117W_5_396765_397649_INTRON_43_513 5' exon 44.526762 178.972432 44.526762 135.44567 89.986216 1.95417599 -0.041812 197 40 SH7214 7214 snR64 3' 24.281837 94.351073 59.316455 1.773175188 -0.041832 80 6 SH506 506 Asp2 3' flank 23.335438 87.200383 55.2679105 1.742473046 -0.041835 193 94 SH12102 12102 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7396 7411 738.672798 1118.38905 928.530924 2.967796372 -0.04184 176 95 SH12785 12785 MT COX1 COX1ai1 24.13974 116.415286 24.13974 93.275546 58.707643 1.768694645 -0.041871 93 19 SH7814 7814 snoRNA cluster1 intergenic 28.044047 137.437114 28.044047 110.393067 69.218557 1.840222541 -0.041889 82 71 SH15326 15326 YAL003W_1_142172_143158_INTRON_81_446 intron 54.42321 203.417019 54.42321 149.993809 102.2085095 2.009487055 -0.041904 59 26 SH15231 15231 MT COX3 cox3 / 3' 26.439695 132.275998 26.439695 106.836303 66.637999 1.823721948 -0.041907 81 82 SH10661 10661 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 191 208 87.882922 199.683849 143.7833855 2.157708705 -0.041909 212 9 SH14269 14269 MT VAR1 includes 5’ processing site VAR1 23.555901 111.439726 23.555901 88.883825 56.219863 1.749889783 -0.041969 103 88 SH9380 9380 RUF1 RUF1 476 492 786.477018 1182.26461 984.370814 2.993158729 -0.041992 95 77 SH5866 5866 snR35 snR35 516 531 26.658905 107.467128 67.0630165 1.826483084 -0.042011 178 38 SH21248 21248 YPL031C spliced 25.503942 102.088207 63.7960745 1.804793957 -0.042012 195 46 SH3351 3351 Thr3 3' flank 24.212238 93.848003 59.0301205 1.77107367 -0.042105 68 73 SH15377 15377 YBL027W_2_168385_169338_INTRON_3_386 intron 23.913789 114.509484 23.913789 91.595695 57.754742 1.761587648 -0.042125 202 36 SH12204 12204 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7906 7921 28.954156 112.298161 70.6261585 1.848965585 -0.042139 123 93 SH15165 15165 MT tRNA Val tRNA 26.244129 131.102634 26.244129 105.858505 66.051317 1.819881481 -0.042148 39 64 SH19223 19223 YPL090C_16_378390_377286_INTRON_7_400 5' exon 472.45057 1227.090768 472.45057 755.640198 614.045384 2.788200471 -0.042205 77 20 SH8578 8578 snR19 / U1 RNA U1 386 405 23.786762 90.654984 57.220873 1.757554479 -0.042238 125 82 SH17131 17131 YHR010W_8_126513_127484_INTRON_32_592 intron 23.731531 112.974791 23.731531 90.24326 56.9873955 1.755778809 -0.042243 75 64 SH14622 14622 MT 21S rRNA Sce1 endonuc 62.730262 223.910623 62.730262 162.180361 112.4553115 2.050979973 -0.042248 34 6 SH20269 20269 YDR424C spliced 24.488942 95.977759 60.2333505 1.779837022 -0.042267 34 8 SH19980 19980 YBL091C-A spliced 26.430754 106.822434 66.626594 1.823647612 -0.042287 155 93 SH4313 4313 telomerase RNA telomerase 601 620 23.345328 87.318314 55.331821 1.742974963 -0.042309 94 64 SH11911 11911 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6441 6459 107.363543 228.970847 168.167195 2.22574128 -0.042319 83 95 SH4198 4198 telomerase RNA telomerase 26 43 25.542241 102.307343 63.924792 1.805669324 -0.042328 100 67 SH17638 17638 YJR145C_10_702761_701720_INTRON_15_270 5' exon 41.819149 172.306944 41.819149 131.487795 86.653472 1.937785969 -0.042397 4 22 SH13460 13460 MT COX1 intronic 23.867886 114.14544 23.867886 91.277554 57.57272 1.760216748 -0.042404 51 76 SH7742 7742 snoRNA cluster1 intergenic 23.079638 107.413089 23.079638 85.333451 54.2065445 1.734051723 -0.042416 79 12 SH16416 16416 YER056C-A_5_270183_269421_INTRON_38_434 intron 23.750572 113.15222 23.750572 90.401648 57.07611 1.756454366 -0.04242 142 20 SH16256 16256 YDR397C_4_1266887_1266355_INTRON_38_129 3' exon 27.091272 134.505202 27.091272 108.41393 67.752601 1.830925972 -0.042424 121 89 SH391 391 Asn1 36-52 36 52 39.933082 128.678178 84.30563 1.925856578 -0.042428 87 61 SH13090 13090 MT COX1 COX1ai3 22.281125 100.878655 22.281125 79.59753 50.9393275 1.707053207 -0.042429 198 18 SH12340 12340 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.075641 137.567253 28.075641 110.491612 69.2836265 1.840630612 -0.042443 58 9 SH4795 4795 snR5 snR5 146 168 23.384788 87.629294 55.507041 1.744348076 -0.042449 28 33 SH21092 21092 YNL012W spliced 27.147998 108.537559 67.8427785 1.831503626 -0.042476 79 7 SH13853 13853 MT COB Cytbi2 23.322692 109.486079 23.322692 87.163387 55.2430395 1.742277566 -0.042484 128 98 SH17012 17012 YGR148C_7_788173_787307_INTRON_1_392 intron 29.036819 140.525981 29.036819 112.489162 70.7629905 1.849806178 -0.042485 85 71 SH8630 8630 snR19 / U1 RNA 646-668 + 3' 646 20.747659 69.564396 45.1560275 1.654715729 -0.042506 106 103 SH5263 5263 snR30 snR30 166 182 25.978905 104.537686 65.2582955 1.814635726 -0.042508 212 55 SH3529 3529 Tyr2 5' flank 23.875678 91.348113 57.6118955 1.760512164 -0.042534 168 20 SH1147 1147 His1 5' flank 23.554294 88.925931 56.2401125 1.750046181 -0.042553 46 67 SH16276 16276 YDR447C_4_1355542_1354818_INTRON_4_317 intron 22.333605 101.302973 22.333605 79.969368 51.1514865 1.708858259 -0.042592 207 16 SH8669 8669 LSR1 / U2 RNA 5' - 3 -14 3 24.489942 96.018974 60.254458 1.779989184 -0.042607 100 2 SH13557 13557 MT COX1 Exon 6 24.783737 122.074305 24.783737 98.290568 61.5371525 1.789137396 -0.042614 154 52 SH18121 18121 YLR388W_12_898158_898821_INTRON_1_488 intron 24.667053 121.052785 24.667053 97.385732 61.0263925 1.785517698 -0.042616 157 34 SH19609 19609 RNA14 1.1 24.757237 98.084957 61.421097 1.788317569 -0.042616 84 19 SH2745 2745 Pro5 3' flank 21.844612 76.660504 49.252558 1.692428791 -0.042644 24 74 SH461 461 Asp1 3' flank 24.887247 99.028196 61.9577215 1.792095438 -0.042656 155 19 SH8939 8939 snR17a / U3a 5' 22.160787 78.797695 50.479241 1.703112816 -0.042677 163 55 SH6937 6937 snR58 snR58 46 62 30.596847 114.876626 72.7367365 1.861753812 -0.042712 108 89 SH13813 13813 MT COB Cytbi2 24.965194 123.391557 24.965194 99.426363 62.1957785 1.793760908 -0.042732 185 67 SH17966 17966 YLR185W_12_522665_523290_INTRON_8_366 intron 23.782897 113.455487 23.782897 90.67259 57.2277435 1.757606622 -0.042738 23 60 SH20127 20127 YDL082W spliced 34.200934 120.167494 77.184214 1.887528486 -0.042751 142 6 SH16952 16952 YGR029W_7_543547_544199_INTRON_87_169 5' exon 55.93819 207.209656 55.93819 152.271466 104.104828 2.017470871 -0.04276 98 25 SH6805 6805 snR52 5' 76.652125 182.962364 129.8072445 2.113298931 -0.042762 17 26 SH12072 12072 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7246 7264 26.45413 106.983869 66.7189995 1.824249525 -0.042787 157 25 SH170 170 Arg2 5' flank 24.847025 98.801337 61.824181 1.791158372 -0.042793 148 6 SH13694 13694 MT ORF 5 (hypothetical) 3' 22.776512 104.896288 22.776512 83.119776 52.948144 1.723850741 -0.042802 99 56 SH6325 6325 snR42 3' 23.586955 89.198623 56.392789 1.751223574 -0.042806 72 68 SH12837 12837 MT COX1 COX1ai1 25.744614 128.116996 25.744614 103.372382 64.558498 1.809953418 -0.042815 59 2 SH5760 5760 snR35 5' - 3 -14 3 23.371235 87.560962 55.4660985 1.744027619 -0.042822 212 16 SH14485 14485 MT 21S rRNA 21S rRNA3 25.845215 128.729698 25.845215 103.884483 64.864849 1.812009411 -0.04283 24 89 SH11254 11254 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3156 3169 29.109856 112.644607 70.8772315 1.850506745 -0.042838 179 85 SH16008 16008 YDL137W_4_216158_217074_INTRON_1_332 intron 25.978924 129.543815 25.978924 104.564891 65.2719075 1.814726305 -0.042838 168 62 SH12283 12283 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 40.559988 169.210103 40.559988 129.650115 85.1050515 1.929955339 -0.042878 16 32 SH15389 15389 YBL040C_2_142830_142074_INTRON_23_119 intron 39.033842 165.394349 39.033842 127.360507 83.1971745 1.920108577 -0.042901 175 38 SH21373 21373 Leu8_9 spliced 91.134347 204.681244 147.9077955 2.169991064 -0.042909 49 74 SH7290 7290 snR66 5' 23.338007 87.319456 55.3287315 1.742950713 -0.042927 77 36 SH3914 3914 RNase MRP 5' - 4 4 23.71279 90.167364 56.940077 1.75541805 -0.042932 8 99 SH18502 18502 YMR194W_13_651144_651909_INTRON_17_479 intron 26.527215 132.765007 26.527215 107.237792 66.8825035 1.825312521 -0.042946 105 55 SH8297 8297 snoRNA cluster4 intergenic 21.737131 96.701761 21.737131 75.96463 48.8508805 1.688872396 -0.042949 27 21 SH940 940 Gly1 5' flank 23.547282 88.912517 56.2298995 1.749967307 -0.042984 160 42 SH7548 7548 snR79 81-84 + 3' 81 22.45422 80.829485 51.6418525 1.713001813 -0.042993 70 35 SH13832 13832 MT COB Cytbi2 22.997551 106.771187 22.997551 84.773636 53.8855935 1.731472671 -0.042999 109 65 SH11106 11106 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2416 2429 24.535247 96.407587 60.471417 1.781550145 -0.043013 177 74 SH19734 19734 Negative Control 25.846368 103.9064 64.876384 1.812086636 -0.043027 136 96 SH172 172 Arg2 5' flank 24.208891 93.912178 59.0605345 1.771297373 -0.043036 33 28 SH21762 21762 copy of SH13394 24.904418 99.144913 62.0246655 1.792564431 -0.043046 97 99 SH12137 12137 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7571 7588 51.104389 145.219624 98.1620065 1.991943427 -0.043056 133 66 SH11095 11095 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2361 2374 100.210552 218.370744 159.290648 2.202190279 -0.04306 82 10 SH15857 15857 YDL079C_4_314747_312950_INTRON_413_704 intron 21.812462 97.290022 21.812462 76.47756 49.145011 1.691479437 -0.043066 38 68 SH9652 9652 RUF4 RUF4 36 53 23.440947 88.113521 55.777234 1.746456974 -0.043088 159 83 SH7571 7571 snR189 5' 23.005207 84.840593 53.9229 1.731773241 -0.043112 3 32 SH4763 4763 snR5 5' - 3 3 30.139319 114.217082 72.1782005 1.85840605 -0.043114 169 66 SH6203 6203 snR40 snR40 76 94 42.308224 132.254048 87.281136 1.94092039 -0.043114 138 35 SH12798 12798 MT COX1 COX1ai1 24.327274 118.150899 24.327274 94.823625 59.5754495 1.775067328 -0.04313 29 4 SH5587 5587 snR33 3' 22.840069 83.622342 53.2312055 1.726166302 -0.043188 67 77 SH6963 6963 snR58 3' 25.940329 104.398067 65.169198 1.814042376 -0.043198 89 75 SH6480 6480 snR45 3' 22.778032 83.16564 52.971836 1.724045026 -0.043201 87 94 SH13921 13921 MT COB Cytbi3 22.009565 98.827364 22.009565 77.817799 49.913682 1.698219608 -0.043245 43 104 SH21560 21560 copy of SH4990 22.436159 80.727471 51.581815 1.71249662 -0.043266 9 78 SH7838 7838 snoRNA cluster1 snR74 25.193444 124.812903 25.193444 100.619459 62.9064515 1.798695188 -0.043274 179 38 SH12555 12555 MT_15S 5' 25.622434 127.413239 25.622434 102.790805 64.2066195 1.807579805 -0.043287 185 78 SH17522 17522 YJL136C_10_156971_156248_INTRON_25_484 intron 25.851232 128.803991 25.851232 103.952759 64.9019955 1.81225805 -0.043293 130 98 SH17055 17055 YGR214W_7_920570_921783_INTRON_91_545 intron 25.592788 127.233938 25.592788 102.64115 64.116969 1.806972984 -0.043295 136 23 SH9417 9417 RUF2 5' 26.722273 107.676589 67.199431 1.827365596 -0.043302 32 8 SH7280 7280 snR65 3' 24.425794 95.596271 60.0110325 1.778231099 -0.043318 23 42 SH18131 18131 YLR406C_12_931752_931062_INTRON_58_406 5' exon 23.440757 110.574169 23.440757 88.133412 55.7870845 1.746533665 -0.04332 134 24 SH3483 3483 Tyr1 5' flank 28.387858 111.195426 69.791642 1.843803416 -0.043329 198 92 SH10151 10151 RUF6 RUF6 601 623 25.72648 103.324133 64.5253065 1.809730076 -0.043355 159 2 SH15611 15611 YBR181C_2_592732_591670_INTRON_7_358 5' exon 24.63179 120.820875 24.63179 97.189085 60.9104375 1.784691719 -0.043379 33 83 SH12268 12268 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.799937 128.499443 25.799937 103.699506 64.7497215 1.811237905 -0.043383 206 31 SH20209 20209 YDR059C spliced 26.132489 105.392911 65.7627 1.817979636 -0.043397 108 64 SH13058 13058 MT COX1 COX1ai2 22.798299 105.13063 22.798299 83.332331 53.065315 1.724810747 -0.043399 188 17 SH12688 12688 MT tRNA Trp 3' 25.766755 128.301936 25.766755 103.535181 64.650968 1.810575032 -0.043435 141 61 SH21777 21777 copy of SH14041 24.676709 97.542973 61.109841 1.786111154 -0.04344 124 92 SH16817 16817 YGL178W_7_167356_170575_INTRON_4_643 intron 30.113361 143.309906 30.113361 114.196545 72.154953 1.858266148 -0.043446 23 37 SH12203 12203 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7901 7918 31.736412 116.589582 74.162997 1.870187272 -0.043447 15 91 SH5807 5807 snR35 snR35 221 240 27.290663 108.896796 68.0937295 1.833107121 -0.043452 54 97 SH6179 6179 snR40 5' 58.315012 155.794835 107.0549235 2.029606645 -0.043477 9 52 SH13026 13026 MT COX1 COX1ai2 23.405464 110.288926 23.405464 87.883462 55.644463 1.745421956 -0.043512 17 16 SH14328 14328 MT VAR1 includes 5’ processing site VAR1 23.363783 109.937305 23.363783 87.573522 55.4686525 1.744047616 -0.043574 210 102 SH19185 19185 YPL079W_16_406631_407534_INTRON_12_432 intron 25.886647 129.042787 25.886647 104.15614 65.0213935 1.813056273 -0.043579 49 51 SH9827 9827 RUF5-1 5' 22.632547 82.129928 52.3812375 1.719175754 -0.043586 124 37 SH2340 2340 Phe3 tRNA-exon/intron 26 42 34.192835 120.205271 77.199053 1.887611973 -0.043592 179 19 SH10253 10253 RUF6 3' 24.900103 99.165751 62.032927 1.792622274 -0.043593 177 38 SH7689 7689 snoRNA cluster1 intergenic 23.262682 109.07795 23.262682 86.815268 55.038975 1.740670337 -0.04363 25 84 SH21773 21773 copy of SH13813 25.19139 100.638633 62.9150115 1.79875428 -0.043649 99 2 SH15525 15525 YBR048W_2_332790_333771_INTRON_46_556 intron 24.745598 121.845011 24.745598 98.099413 61.4225055 1.788327528 -0.043659 142 13 SH20151 20151 YDL125C spliced 24.684869 97.630602 61.1577355 1.786451396 -0.043684 81 100 SH3423 3423 Trp1 5' flank 35.298489 121.798983 78.548736 1.895139201 -0.043706 25 61 SH7361 7361 snR68 snR68 26 42 34.455397 120.591727 77.523562 1.889433719 -0.043709 127 76 SH9095 9095 snR14 / U4 RNA U4 91 107 23.492228 88.56213 56.027179 1.748398756 -0.043726 149 37 SH8063 8063 snoRNA cluster 2 snR61 74.756838 253.977617 74.756838 180.220779 127.4888085 2.105472062 -0.043761 108 46 SH20227 20227 YDR129C spliced 25.904208 104.26974 65.086974 1.813494081 -0.043876 166 11 SH12821 12821 MT COX1 COX1ai1 30.663755 144.704334 30.663755 115.040579 72.852167 1.862442474 -0.043877 140 28 SH17078 17078 YGR225W_7_945138_946919_INTRON_1184_1276 intron/exon 25.377835 125.977709 25.377835 101.599874 63.4888545 1.802697491 -0.043886 7 103 SH12902 12902 MT COX1 Exon2 22.985266 106.746522 22.985266 84.761256 53.873261 1.731373265 -0.043891 180 17 SH5302 5302 snR30 snR30 361 373 27.18367 108.695258 67.939464 1.832122116 -0.043896 64 82 SH1213 1213 Ile1 tRNA 26 41 25.814095 103.814118 64.8141065 1.811669538 -0.043908 83 87 SH14368 14368 MT ORF9 and ORF10 (hypothetical) intergenic 22.088895 99.497254 22.088895 78.408359 50.248627 1.7011242 -0.043923 76 30 SH20089 20089 YDL012C spliced 23.752203 90.556043 57.154123 1.757047565 -0.043952 64 8 SH16395 16395 YER044C-A_5_239773_238459_INTRON_64_151 3' exon 22.560563 103.203729 22.560563 81.643166 52.1018645 1.716853265 -0.043971 57 81 SH15893 15893 YDL082W_4_308423_309387_INTRON_5_369 intron/exon 24.327207 118.233425 24.327207 94.906218 59.6167125 1.775368024 -0.043984 160 4 SH1224 1224 Ile1 3' flank 24.750191 98.168994 61.4595925 1.788589676 -0.043995 194 104 SH13677 13677 MT ORF 5 (hypothetical) 5' 23.096825 107.699904 23.096825 85.603079 54.349952 1.735199165 -0.043995 3 19 SH10358 10358 RUF7 RUF7 401 420 40.995785 130.376344 85.6860645 1.932910196 -0.044018 44 9 SH18312 18312 YML073C_13_124172_123227_INTRON_16_430 intron 22.649409 103.940441 22.649409 82.291032 52.4702205 1.719912889 -0.044022 86 46 SH12726 12726 MT COX1 5' / exon1 31.48506 146.741365 31.48506 116.256305 73.8706825 1.868472112 -0.044023 147 54 SH19304 19304 YPL198W_16_173151_174701_INTRON_12_420 intron 37.125122 160.70413 37.125122 124.579008 80.852065 1.907691116 -0.044031 31 4 SH16852 16852 YGL183C_7_157071_156547_INTRON_4_86 intron 26.802932 133.697643 26.802932 107.894711 67.3488215 1.828330001 -0.044096 185 90 SH19030 19030 YOR182C_15_678792_678190_INTRON_4_414 3' exon 26.697366 133.3665 26.697366 107.669134 67.18325 1.827261009 -0.044105 75 87 SH13099 13099 MT COX1 COX1ai3 24.565557 120.318041 24.565557 96.752484 60.6590205 1.782895393 -0.044135 102 27 SH8688 8688 LSR1 / U2 RNA U2 81 102 21.50178 74.490509 47.9961445 1.681206352 -0.044147 111 56 SH14668 14668 MT 21S rRNA 21S rRNA4 23.067278 107.463396 23.067278 85.396118 54.231698 1.734253202 -0.044151 181 38 SH1320 1320 Ile3 5' flank 23.695934 90.155279 56.9256065 1.755307666 -0.04416 120 13 SH2441 2441 Phe5 5' flank 47.82592 140.456898 94.141409 1.973780694 -0.044166 65 60 SH12576 12576 MT_15S MT_15S 28.134976 137.852225 28.134976 110.717249 69.4261125 1.841522848 -0.044172 201 22 SH6663 6663 snR48 3' 57.873013 155.191574 106.5322935 2.027481277 -0.044175 104 50 SH17471 17471 YJL001W_10_434855_435618_INTRON_66_181 5' exon 26.200172 131.003074 26.200172 105.802902 66.001537 1.819554049 -0.044179 13 84 SH20537 20537 YGR183C spliced 26.049352 105.036125 65.5427385 1.816524583 -0.044208 194 13 SH11696 11696 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5366 5382 27626.14726 27312.21943 27469.18334 4.438845748 -0.044215 29 57 SH5097 5097 snR11 snR11 86 106 22.585123 81.837427 52.211275 1.717764299 -0.044223 92 95 SH11161 11161 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2691 2716 24.036733 92.721319 58.379026 1.766256845 -0.044232 143 52 SH13085 13085 MT COX1 COX1ai3 22.378542 101.788808 22.378542 80.410266 51.394404 1.710915834 -0.044234 150 19 SH13808 13808 MT COB Cytbi2 24.435001 119.19216 24.435001 95.757159 60.09608 1.778846144 -0.044237 102 14 SH14502 14502 MT 21S rRNA 21S rRNA3 34.351913 153.826406 34.351913 120.474493 77.413203 1.888815037 -0.044255 82 55 SH803 803 Glu1 tRNA 31 43 36.248467 123.255673 79.75207 1.901741964 -0.044263 98 45 SH14273 14273 MT VAR1 includes 5’ processing site VAR1 26.192492 130.964886 26.192492 105.772394 65.982443 1.819428391 -0.044284 30 5 SH13437 13437 MT COX1 intronic 22.695099 104.346407 22.695099 82.651308 52.6732035 1.721589732 -0.044309 5 9 SH14392 14392 MT 21S rRNA 5' / 21S rRNA3 43.349175 176.198997 43.349175 133.849822 88.5994985 1.947431264 -0.044311 165 79 SH9586 9586 RUF3 RUF3 316 337 24.655692 97.467848 61.06177 1.785769389 -0.044317 109 92 SH13845 13845 MT COB Cytbi2 21.158278 92.450397 21.158278 72.292119 46.7251985 1.669551155 -0.044327 141 81 SH14904 14904 MT tRNA Ile 3' 24.575182 120.421559 24.575182 96.846377 60.7107795 1.783265809 -0.044332 175 24 SH11760 11760 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5686 5699 32934.66974 31883.16568 32408.91771 4.510664528 -0.044342 18 95 SH8551 8551 snR19 / U1 RNA U1 251 263 49.578249 143.082976 96.3306125 1.983764322 -0.044376 74 36 SH4866 4866 snR8 snR8 111 123 25.476569 102.139821 63.808195 1.80487646 -0.044386 156 71 SH18928 18928 YOL121C_15_92849_92025_INTRON_21_410 intron 24.659293 121.162739 24.659293 97.503446 61.0813695 1.785908766 -0.044394 138 5 SH16279 16279 YDR447C_4_1355542_1354818_INTRON_4_317 intron 23.386132 110.204297 23.386132 87.818165 55.6021485 1.745091573 -0.044396 83 92 SH5123 5123 snR11 snR11 216 235 23.848829 91.324884 57.5868565 1.760323372 -0.044436 154 80 SH19157 19157 YPL075W_16_412249_415357_INTRON_9_759 intron 27.487859 135.85938 27.487859 109.371521 68.42969 1.835244573 -0.044437 52 55 SH17368 17368 YIL052C_9_257061_256224_INTRON_38_509 intron 27.974664 137.371724 27.974664 110.39706 69.185862 1.840017356 -0.044438 60 56 SH4584 4584 U3b (snR17b) 3' 22.537995 81.526788 52.0323915 1.716273787 -0.044453 193 50 SH20103 20103 YDL061C spliced 26.220825 105.933012 66.0769185 1.820049781 -0.044476 91 47 SH7638 7638 snR189 3' 25.823064 103.908023 64.8655435 1.812014061 -0.0445 142 39 SH14941 14941 MT tRNA Asn 3' 24.590659 120.57355 24.590659 96.982891 60.786775 1.783809103 -0.044502 143 96 SH21224 21224 YOR182C spliced 27.245669 108.861943 68.053806 1.832852419 -0.044502 39 11 SH10075 10075 RUF6 RUF6 221 235 26.436639 107.039096 66.7378675 1.824372325 -0.04451 75 55 SH18111 18111 YLR367W_12_855877_857316_INTRON_698_1180 intron 21.607879 95.830215 21.607879 75.222336 48.4151075 1.6849809 -0.044513 34 65 SH18735 18735 YNL162W_14_331319_332151_INTRON_5_516 5' exon 31.836609 147.631801 31.836609 116.795192 74.3159005 1.871081745 -0.044516 70 97 SH5439 5439 snR31 3' 35.102353 121.56924 78.3357965 1.893960264 -0.04454 162 81 SH16375 16375 YER003C_5_159117_157735_INTRON_32_124 intron 24.793173 122.352319 24.793173 98.559146 61.6761595 1.790117323 -0.044546 164 35 SH5514 5514 snR32 3' 24.411084 95.604258 60.007671 1.778206771 -0.04455 203 38 SH18882 18882 YOL047C_15_242745_241612_INTRON_244_306 5' exon 29.0331 140.638355 29.0331 112.605255 70.8191775 1.850150879 -0.044557 187 103 SH10772 10772 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 746 764 25.997514 104.802588 65.400051 1.815578087 -0.04458 101 101 SH15209 15209 MT COX3 cox3 24.830135 122.681973 24.830135 98.851838 61.8409865 1.791276409 -0.04459 79 54 SH12936 12936 MT COX1 COX1ai2 25.86333 128.984601 25.86333 104.121271 64.9923005 1.81286191 -0.044603 34 62 SH1460 1460 Leu2 tRNA 71 87 235.809203 416.837031 326.323117 2.513647841 -0.044613 105 99 SH20032 20032 YBR181C spliced 26.277746 106.235614 66.25668 1.82122967 -0.044618 116 20 SH5556 5556 snR33 snR33 66 83 22.643058 82.295769 52.4694135 1.71990621 -0.044618 145 3 SH10123 10123 RUF6 RUF6 461 479 24.105768 93.28196 58.693864 1.768592701 -0.044629 123 39 SH15597 15597 YBR089C-A_2_426588_426148_INTRON_1_114 intron 29.99333 143.076218 29.99333 114.082888 72.038109 1.857562304 -0.04465 3 96 SH3256 3256 Thr1 3' flank 25.958003 104.608297 65.28315 1.814801102 -0.044665 43 26 SH3525 3525 Tyr1 3' flank 25.585376 102.714189 64.1497825 1.807195188 -0.044668 151 85 SH20700 20700 YJL001W spliced 25.62171 102.899681 64.2606955 1.807945422 -0.044682 143 58 SH19441 19441 YPR187W_16_911252_911795_INTRON_21_96 intron 22.772861 105.029967 22.772861 83.257106 53.0149835 1.724398631 -0.04469 161 4 SH8311 8311 snoRNA cluster4 intergenic 22.648457 103.99031 22.648457 82.341853 52.495155 1.720119222 -0.044693 198 56 SH13084 13084 MT COX1 COX1ai3 24.172383 116.966488 24.172383 93.794105 58.983244 1.770728654 -0.044693 48 70 SH2688 2688 Pro4 3' flank 23.559296 89.163796 56.361546 1.750982897 -0.044697 185 4 SH18051 18051 YLR333C_12_796335_795573_INTRON_1_423 intron 24.26921 117.803246 24.26921 94.534036 59.401623 1.773798311 -0.044714 174 59 SH5666 5666 snR34 snR34 251 268 26.377763 106.755031 66.566397 1.823255051 -0.044715 122 51 SH2120 2120 Met1 5' flank - tRNA3 3 25.471674 102.144187 63.8079305 1.804874659 -0.04475 141 73 SH21268 21268 YPL081W spliced 32.593421 117.923019 75.25822 1.876553942 -0.044766 115 87 SH315 315 Arg5 5' flank 24.343343 95.106733 59.725038 1.776156435 -0.044774 189 57 SH20771 20771 YKL002W spliced 27.335847 109.069104 68.2024755 1.833800138 -0.044774 84 13 SH2605 2605 Pro3 5' flank 51.987031 146.629815 99.308423 1.996986085 -0.044777 117 16 SH14687 14687 MT 21S rRNA 21S rRNA4 22.79968 105.266882 22.79968 83.467202 53.133441 1.725367942 -0.044828 51 29 SH13843 13843 MT COB Cytbi2 22.5617 103.286526 22.5617 81.724826 52.143263 1.717198205 -0.044866 134 82 SH13007 13007 MT COX1 COX1ai2 23.837884 114.12203 23.837884 91.284146 57.561015 1.760128443 -0.044878 95 6 SH9889 9889 RUF5-1 RUF5-1 251 268 22.439311 80.882071 51.660691 1.713160211 -0.044896 169 79 SH18692 18692 YNL112W_14_413636_416278_INTRON_1274_2275 intron 22.456348 102.45625 22.456348 80.999902 51.728125 1.713726737 -0.044901 115 51 SH1019 1019 Gly2 3' flank 27.990693 110.459446 69.2250695 1.8402634 -0.044929 146 17 SH19121 19121 YPL031C_16_493033_492014_INTRON_18_119 intron/exon 24.753317 122.043626 24.753317 98.290309 61.521813 1.789029125 -0.044958 133 32 SH3992 3992 RNase MRP 3' 24.690698 97.8048 61.247749 1.787090132 -0.04497 75 88 SH20662 20662 YIL052C spliced 34.124204 120.187577 77.1558905 1.887369088 -0.044984 74 27 SH12689 12689 MT ORF 8 (hypothetical) 5' 23.442285 110.743698 23.442285 88.301413 55.871849 1.747193044 -0.045014 45 16 SH4964 4964 snR9 3' 22.275516 79.767107 51.0213115 1.707751618 -0.045015 139 101 SH20735 20735 YJL189W spliced 24.438022 95.858521 60.1482715 1.779223151 -0.045032 17 15 SH17486 17486 YJL024C_10_396288_395627_INTRON_23_99 intron 25.599515 127.416959 25.599515 102.817444 64.2084795 1.807592386 -0.045059 66 72 SH21581 21581 copy of SH5870 25.463276 102.127103 63.7951895 1.804787932 -0.045068 190 87 SH10340 10340 RUF7 RUF7 311 328 24.727983 98.105536 61.4167595 1.788286898 -0.04508 165 24 SH18603 18603 YNL069C_14_494998_493953_INTRON_29_477 intron 89.44664 290.817494 89.44664 202.370854 145.908747 2.164081328 -0.045084 42 52 SH3517 3517 Tyr1 3' flank 26.71984 107.774695 67.2472675 1.827674642 -0.045108 137 82 SH8852 8852 LSR1 / U2 RNA U2 901 917 1075.717511 1565.812779 1320.765145 3.120825599 -0.045108 213 18 SH4413 4413 telomerase RNA telomerase 1101 1118 23.239665 86.776567 55.008116 1.740426771 -0.045113 128 77 SH17468 17468 YIL148W_9_68708_69528_INTRON_9_442 intron/exon 22.107232 99.734579 22.107232 78.627347 50.3672895 1.70214858 -0.045116 68 76 SH12533 12533 MT_ORF6 + ORF7 (hypothetical) ORF6/7 24.099795 116.385812 24.099795 93.286017 58.692906 1.768585613 -0.045145 187 27 SH8818 8818 LSR1 / U2 RNA U2 731 748 24.014339 92.640546 58.3274425 1.765872934 -0.045164 198 103 SH1717 1717 Leu6 3' flank 25.203515 100.823475 63.013495 1.799433568 -0.045212 111 6 SH13097 13097 MT COX1 COX1ai3 24.94473 123.464069 24.94473 99.519339 62.2320345 1.794013999 -0.045245 68 75 SH15342 15342 YAL030W_1_87288_87754_INTRON_103_215 3' exon 400.890162 1056.271294 400.890162 656.381132 528.635647 2.723156445 -0.04526 105 19 SH16716 16716 YGL031C_7_438393_437938_INTRON_1_456 intron 21.307235 93.622604 21.307235 73.315369 47.311302 1.6749649 -0.045267 100 18 SH2039 2039 Lys3 3' flank 27.740032 109.953925 68.8469785 1.837884885 -0.045296 23 16 SH21551 21551 copy of SH4564 37.104312 124.627514 80.865913 1.907765494 -0.045308 167 37 SH13957 13957 MT COB Cytbi3 24.627057 120.974288 24.627057 97.347231 60.987144 1.785238296 -0.045331 31 33 SH641 641 Gln2 5' flank - tRNA10 5' flank 10 27.084642 108.568407 67.8265245 1.831399564 -0.045351 157 40 SH20400 20400 YFR024C-A spliced 24.740197 98.227805 61.484001 1.788762121 -0.045351 86 68 SH17712 17712 YKL081W_11_282533_284097_INTRON_206_531 intron 27.024002 134.463305 27.024002 108.439303 67.7316525 1.830791672 -0.045355 55 99 SH12867 12867 MT COX1 COX1ai1 24.200101 117.269075 24.200101 94.068974 59.1345375 1.771841204 -0.045356 99 38 SH16996 16996 YGR118W_7_726968_727725_INTRON_66_385 intron 29.745826 142.49613 29.745826 113.750304 71.748065 1.855810193 -0.045382 14 98 SH845 845 Glu2 5' flank - tRNA10 10 62.078473 161.510049 111.794261 2.048419509 -0.045397 153 57 SH21769 21769 copy of SH13809 22.857651 83.946442 53.4020465 1.727557901 -0.0454 27 33 SH5530 5530 snR33 5' 25.059662 100.111776 62.585719 1.796475246 -0.045404 164 48 SH8049 8049 snoRNA cluster 2 intergenic 26.317268 131.82063 26.317268 106.503362 66.410315 1.82223554 -0.045406 197 26 SH16733 16733 YGL076C_7_365994_364333_INTRON_565_1032 intron 24.005984 115.61161 24.005984 92.605626 58.305805 1.765711796 -0.045461 136 28 SH13767 13767 MT COB intronic 26.662103 133.333646 26.662103 107.671543 67.166823 1.827154807 -0.045471 100 28 SH16516 16516 YER117W_5_396765_397649_INTRON_43_513 intron/exon 21.797424 97.360039 21.797424 76.562615 49.1800195 1.691788697 -0.045474 92 19 SH7184 7184 snR64 5' - 2 -14 2 118.050326 245.242024 181.646175 2.259226257 -0.045475 200 97 SH13927 13927 MT COB Cytbi3 49.622246 191.85682 49.622246 143.234574 96.42841 1.984205006 -0.045531 71 39 SH3246 3246 Thr1 3' flank 25.235479 101.010551 63.123015 1.800187734 -0.045533 213 48 SH16151 16151 YDR092W_4_629869_630598_INTRON_31_298 intron/exon 24.301408 118.161081 24.301408 94.859673 59.5805405 1.775104439 -0.045533 210 53 SH4905 4905 snR9 5' 23.915695 91.932626 57.9241605 1.762859748 -0.045551 8 30 SH8634 8634 snR19 / U1 RNA 666-668 + 3' 666 24.803596 98.742191 61.7728935 1.790797945 -0.045552 73 59 SH1008 1008 Gly2 tRNA 31 45 208.242672 377.068423 292.6555475 2.466356761 -0.04561 121 92 SH16050 16050 YDL191W_4_117665_118518_INTRON_4_494 intron 24.084615 116.300481 24.084615 93.215866 58.6502405 1.768269797 -0.045615 43 21 SH13690 13690 MT ORF 5 (hypothetical) ORF5 22.893616 106.127355 22.893616 84.233739 53.5636775 1.728870387 -0.045632 87 35 SH5113 5113 snR11 snR11 166 190 22.325633 80.163041 51.244337 1.709645879 -0.045666 182 41 SH1595 1595 Leu4 3' flank 32.307624 117.549422 74.928523 1.874647172 -0.045699 182 62 SH3388 3388 Thr4 tRNA 26 43 24.064515 93.071824 58.5681695 1.767661651 -0.045703 155 13 SH5891 5891 snR36 5' 22.621871 82.236338 52.4291045 1.71957244 -0.045734 172 7 SH6322 6322 snR42 3' 27.04911 108.515145 67.7821275 1.831115196 -0.045742 116 18 SH16887 16887 YGL189C_7_148970_148233_INTRON_1_368 intron 22.759932 105.015187 22.759932 83.255255 53.0075935 1.724338088 -0.045764 144 95 SH10462 10462 RUF8 RUF8 236 252 25.576197 102.755894 64.1660455 1.807305275 -0.045764 151 70 SH16384 16384 YER007C-A_5_166884_166236_INTRON_12_114 intron 26.848023 133.938012 26.848023 108.089989 67.469006 1.829104312 -0.045819 134 84 SH21779 21779 copy of SH14229 23.673953 90.148923 56.911438 1.755199559 -0.045865 13 11 SH3678 3678 Val2 3' flank 23.319368 87.447346 55.383357 1.743379276 -0.045868 154 18 SH13048 13048 MT COX1 COX1ai2 22.178687 100.353391 22.178687 79.174704 50.6766955 1.704808288 -0.045879 214 20 SH15418 15418 YBL059W_2_110555_111205_INTRON_287_355 intron 22.944368 106.577841 22.944368 84.633473 53.7889205 1.730692828 -0.045885 211 66 SH12843 12843 MT COX1 COX1ai1 28.003965 137.547372 28.003965 110.543407 69.273686 1.840568297 -0.045886 4 78 SH7109 7109 snR63 snR63 51 70 23.471375 88.606217 56.038796 1.748488796 -0.045915 141 19 SH19099 19099 YOR312C_15_901173_900242_INTRON_2_427 intron 24.898871 123.242064 24.898871 99.343193 62.121032 1.793238662 -0.045951 63 52 SH7746 7746 snoRNA cluster1 intergenic 23.004498 107.095277 23.004498 85.090779 54.0476385 1.732776723 -0.045986 11 2 SH448 448 Asp1 61-71 + 3' flank 61 3' flank 28.768861 112.14458 70.4567205 1.847922425 -0.04599 135 24 SH14856 14856 MT tRNA Ser2; tRNA Arg2 tRNA Ser 43.040564 175.557525 43.040564 133.516961 88.2787625 1.945856237 -0.045994 116 11 SH10773 10773 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 751 770 24.958394 99.647021 62.3027075 1.79450692 -0.045997 42 9 SH17526 17526 YJL136C_10_156971_156248_INTRON_25_484 intron 22.618979 103.858042 22.618979 82.239063 52.429021 1.719571748 -0.046012 115 56 SH4491 4491 U3b (snR17b) U3b 11 30 22.371713 80.508792 51.4402525 1.711303092 -0.046026 214 63 SH4144 4144 SRP RNA SRP RNA 611 623 42.009342 132.012719 87.0110305 1.939574312 -0.04605 74 93 SH6746 6746 snR50 5' 58.023114 155.576663 106.7998885 2.028570799 -0.046079 60 28 SH6850 6850 snR52 3' 30.906667 115.525539 73.216103 1.864606609 -0.046131 39 25 SH17533 17533 YJL177W_10_90783_91654_INTRON_310_626 intron 29.751257 142.551241 29.751257 113.799984 71.7756205 1.855976956 -0.046136 68 91 SH3113 3113 Ser4 5' flank 22.413001 80.802351 51.607676 1.712714302 -0.046141 39 81 SH8103 8103 snoRNA cluster 3; 5' 29.276337 141.356745 29.276337 113.080408 71.1783725 1.852348054 -0.046164 181 16 SH3308 3308 Thr2 3' flank 25.245705 101.11228 63.1789925 1.800572696 -0.046164 20 49 SH5954 5954 snR36 snR36 226 243 25.124301 100.499672 62.8119865 1.798042529 -0.046183 143 29 SH21254 21254 YPL075W spliced 27.8369 110.209875 69.0233875 1.83899627 -0.046185 107 95 SH21600 21600 copy of SH6671 24.627159 97.437274 61.0322165 1.785559142 -0.046224 168 40 SH13989 13989 MT COB intronic 24.675472 121.488694 24.675472 97.813222 61.244347 1.787066008 -0.046233 138 53 SH1000 1000 Gly2 5' flank - tRNA 7 7 28.513622 111.630097 70.0718595 1.845543643 -0.046253 184 76 SH19521 19521 ACT1 23.741272 90.688631 57.2149515 1.757509534 -0.046258 87 45 SH16554 16554 YER133W_5_432491_433954_INTRON_178_702 intron 21.631056 96.141214 21.631056 75.510158 48.570607 1.686373531 -0.046268 116 31 SH9236 9236 snR6 / U6 RNA U6 51 67 73.996945 179.350979 126.673962 2.102687354 -0.046294 81 36 SH248 248 Arg3 3' flank 25.87204 104.306753 65.0893965 1.813510245 -0.046329 12 25 SH21662 21662 copy of SH9192 23.290441 87.271178 55.2808095 1.742574394 -0.046335 114 96 SH7511 7511 snR71 3' 25.458678 102.205783 63.8322305 1.80504002 -0.046341 191 81 SH18158 18158 YLR426W_12_987057_988108_INTRON_81_151 intron 26.061888 130.33952 26.061888 105.277632 65.66976 1.817365429 -0.04636 170 95 SH13738 13738 MT COB Exon1 23.321577 109.833345 23.321577 87.511768 55.4166725 1.743640445 -0.046389 40 62 SH2419 2419 Phe4 3' flank 24.51077 96.554637 60.5327035 1.781990071 -0.046405 100 91 SH18848 18848 YNL312W_14_48286_49215_INTRON_8_115 intron 25.280319 125.588157 25.280319 101.307838 63.2940785 1.801363081 -0.046419 9 12 SH17350 17350 YIL018W_9_316766_317930_INTRON_5_404 intron 25.097221 124.478911 25.097221 100.38169 62.7394555 1.797540745 -0.046423 87 97 SH21599 21599 copy of SH6670 27.381883 109.262433 68.322158 1.834561575 -0.046425 42 23 SH12617 12617 MT_15S MT_15S 25.32711 125.8726 25.32711 101.54549 63.4363 1.802337844 -0.046427 160 35 SH20631 20631 YHR123W spliced 71.593488 175.777228 123.685358 2.09231829 -0.046438 205 89 SH18452 18452 YMR143W_13_551927_552902_INTRON_25_568 exon/intron 24.473915 119.748776 24.473915 96.274861 60.374388 1.780852741 -0.046452 55 67 SH3852 3852 RNaseP RNaseP 226 238 27.043184 108.544507 67.7938455 1.831190269 -0.046471 128 60 SH17826 17826 YKR057W_11_551293_551878_INTRON_25_346 3' exon 24.28082 118.074772 24.28082 94.793952 59.537386 1.774789763 -0.046477 47 88 SH5432 5432 snR31 3' 22.892534 84.301039 53.5967865 1.729138751 -0.046487 93 82 SH15875 15875 YDL082W_4_308423_309387_INTRON_5_369 exon/intron 24.546187 120.384558 24.546187 96.838371 60.692279 1.783133446 -0.046507 90 34 SH16642 16642 YFR024C-A_6_203420_201947_INTRON_48_165 3' exon 24.615709 120.993606 24.615709 97.377897 60.996803 1.785307073 -0.046518 191 100 SH9514 9514 RUF3 5' 27.339964 109.180564 68.260264 1.834167964 -0.046547 13 20 SH19861 19861 Negative Control 42.561271 132.856751 87.709011 1.943044214 -0.04656 79 94 SH11836 11836 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6066 6084 25.953962 104.745028 65.349495 1.815242236 -0.046581 64 65 SH7639 7639 snR189 3' 25.453114 102.197091 63.8251025 1.804991521 -0.046585 115 75 SH4863 4863 snR8 snR8 96 111 26.209935 106.053549 66.131742 1.820409963 -0.046595 69 53 SH8948 8948 snR17a / U3a U3a 26 42 25.255379 101.196244 63.2258115 1.800894412 -0.046604 88 24 SH1888 1888 Leu9 3' flank 26.265312 106.338053 66.3016825 1.821524549 -0.046609 8 52 SH13419 13419 MT COX1 intronic 23.485807 111.266899 23.485807 88.781092 56.1334495 1.749221731 -0.046614 38 75 SH5921 5921 snR36 snR36 61 77 27.407248 109.329327 68.3682875 1.834854702 -0.046651 146 87 SH19737 19737 Negative Control 24.775648 98.636672 61.70616 1.790328521 -0.046664 67 52 SH9946 9946 RUF5-1 RUF5-1 536 550 33.000909 118.641 75.8209545 1.879789247 -0.046706 178 11 SH7231 7231 snR65 5' 23.157854 86.30905 54.733452 1.73825284 -0.046754 93 64 SH9097 9097 snR14 / U4 RNA U4 101 115 27.450948 109.428029 68.4394885 1.835306755 -0.046755 15 22 SH19620 19620 RNA14 1.1 27.14931 108.787184 67.968247 1.832306069 -0.046756 13 37 SH19275 19275 YPL143W_16_282121_282969_INTRON_20_544 intron 25.133637 124.727758 25.133637 100.594121 62.863879 1.798401176 -0.046782 41 45 SH19470 19470 ADH1 24.484957 96.392689 60.438823 1.781315998 -0.046782 18 64 SH3479 3479 Tyr1 5' flank 44.96318 136.449991 90.7065855 1.957638819 -0.046853 172 95 SH12003 12003 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6901 6921 25.467675 102.293852 63.8807635 1.805370098 -0.046869 150 24 SH5628 5628 snR34 snR34 61 77 24.819421 99.001 61.9102105 1.791762281 -0.046884 98 84 SH17750 17750 YKL157W_11_154993_158183_INTRON_282_664 intron 26.167896 131.033141 26.167896 105.865245 66.0165705 1.819652959 -0.046915 62 50 SH14767 14767 MT ORF11; tRNA Leu; tRNA Gln ORF11 23.087769 107.887302 23.087769 85.799533 54.443651 1.735947241 -0.046943 199 76 SH9526 9526 RUF3 RUF3 16 30 25.503055 102.482254 63.9926545 1.806130126 -0.046978 36 91 SH19965 19965 YBL059W spliced 26.512915 107.437588 66.9752515 1.825914353 -0.046992 64 27 SH18100 18100 YLR367W_12_855877_857316_INTRON_698_1180 intron 24.227092 117.662045 24.227092 94.434953 59.3310225 1.773281833 -0.047011 172 45 SH17991 17991 YLR287C-A_12_713158_712537_INTRON_4_433 5' exon 24.767161 122.372775 24.767161 98.605614 61.6863875 1.790189338 -0.047011 38 85 SH7950 7950 snoRNA cluster1 3' 28.037121 137.717103 28.037121 110.679982 69.3585515 1.841100015 -0.047027 133 74 SH1630 1630 Leu5 tRNA 16 28 24.805113 98.904112 61.8546125 1.791372091 -0.047032 129 16 SH15435 15435 YBL072C_2_89435_88518_INTRON_1_308 intron 33.456651 151.789563 33.456651 119.332912 76.3947815 1.883063693 -0.047038 97 68 SH18541 18541 YMR230W_13_732413_733140_INTRON_53_462 intron 26.781389 133.798987 26.781389 108.017598 67.3994935 1.828656633 -0.047045 80 96 SH5576 5576 snR33 snR33 166 182 268.435379 465.239905 366.837642 2.564473893 -0.047054 184 27 SH9992 9992 RUF5-1 766-775 + 3' 766 25.90068 104.512673 65.2066765 1.814292065 -0.047061 166 84 SH13204 13204 MT COX1 exon4/cox1-ai4 30.655876 144.862182 30.655876 115.206306 72.931091 1.86291271 -0.047065 109 60 SH534 534 Cys1 5' flank 28.890088 112.460106 70.675097 1.849266413 -0.047072 129 69 SH389 389 Asn1 26-41 26 41 25.39025 101.91956 63.654905 1.803831874 -0.047102 99 81 SH3761 3761 Val4 tRNA 31 43 24.306522 95.052157 59.6793395 1.775824008 -0.047107 184 57 SH16389 16389 YER044C-A_5_239773_238459_INTRON_64_151 5' exon 34.918286 155.378617 34.918286 121.460331 78.1893085 1.893147372 -0.047136 40 10 SH12733 12733 MT COX1 Exon1 22.461007 102.677238 22.461007 81.216231 51.838619 1.714653423 -0.047152 76 20 SH3214 3214 Thr1 5' flank 23.664555 90.200003 56.932279 1.755358569 -0.047176 145 64 SH13884 13884 MT COB intronic 24.77914 122.495751 24.77914 98.716611 61.7478755 1.79062202 -0.047184 181 79 SH18874 18874 YNR053C_14_723108_721117_INTRON_811_1341 intron 25.752676 128.522116 25.752676 103.76944 64.761058 1.811313935 -0.047196 25 43 SH6410 6410 snR43 3' 25.372334 101.839711 63.6060225 1.803498239 -0.04724 46 82 SH18887 18887 YOL047C_15_242745_241612_INTRON_244_306 intron/exon 41.52107 171.893516 41.52107 131.372446 86.446758 1.936748711 -0.047256 208 43 SH10332 10332 RUF7 RUF7 271 289 26.790551 108.049695 67.420123 1.828789541 -0.047263 157 54 SH6601 6601 snR47 3' 41.099018 130.746688 85.922853 1.934108689 -0.047277 153 19 SH4431 4431 telomerase RNA telomerase 1191 1207 28.315361 111.277759 69.79656 1.843834018 -0.047285 212 101 SH13130 13130 MT COX1 COX1ai3 33.900027 152.898588 33.900027 119.998561 76.949294 1.88620464 -0.047318 67 15 SH14946 14946 MT tRNA Met 5' 23.397159 110.56902 23.397159 88.171861 55.78451 1.746513623 -0.047329 22 5 SH19189 19189 YPL079W_16_406631_407534_INTRON_12_432 intron/exon 29.882194 142.945676 29.882194 114.063482 71.972838 1.857168628 -0.047331 56 20 SH589 589 Gln1 5' flank - tRNA3 5' flank 3 82.812744 192.664123 137.7384335 2.139055139 -0.04734 205 49 SH11692 11692 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5346 5363 137.003081 273.317447 205.160264 2.312093249 -0.0474 17 33 SH7765 7765 snoRNA cluster1 snR76 26.668179 133.463679 26.668179 107.7955 67.2318395 1.827574994 -0.04741 211 10 SH10543 10543 RUF8 RUF8 641 662 23.472121 88.750943 56.111532 1.749052126 -0.047414 52 96 SH13257 13257 MT COX1 COX1-ai4 24.975771 123.821504 24.975771 99.845733 62.410752 1.795259416 -0.047415 95 76 SH14087 14087 MT COB Cytbi4 22.856396 105.971187 22.856396 84.114791 53.4855935 1.728236819 -0.047421 95 2 SH10153 10153 RUF6 RUF6 611 632 24.432568 96.053309 60.2429385 1.779906148 -0.047437 150 76 SH18237 18237 YML026C_13_223828_222987_INTRON_48_448 intron 27.295144 135.43438 27.295144 109.139236 68.21719 1.833893826 -0.047477 211 27 SH10241 10241 RUF6 1051 + 3' 1051 24.558263 97.030356 60.7943095 1.78386293 -0.047497 140 14 SH4833 4833 snR8 5' 22.606176 82.273443 52.4398095 1.719661105 -0.047504 139 79 SH1756 1756 Leu7 76-84 + 3' flank 76 22.405659 80.866118 51.6358885 1.712951654 -0.047543 165 23 SH12090 12090 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7336 7351 70.563625 174.334068 122.4488465 2.087954698 -0.047553 127 72 SH2596 2596 Pro3 5' flank 35.499055 122.313875 78.906465 1.897112587 -0.047554 169 64 SH10505 10505 RUF8 RUF8 451 468 26.16186 105.888576 66.025218 1.819709844 -0.047568 20 34 SH14540 14540 MT 21S rRNA 21S rRNA3 22.744234 105.041345 22.744234 83.297111 53.0206725 1.724445232 -0.047576 26 46 SH10252 10252 RUF6 3' 23.033865 85.452855 54.24336 1.734346583 -0.047583 18 15 SH4851 4851 snR8 snR8 36 52 66.412936 168.157089 117.2850125 2.069242518 -0.047618 192 32 SH16300 16300 YDR450W_4_1359912_1360787_INTRON_48_482 intron 26.592202 133.236195 26.592202 107.643993 67.1180975 1.826839638 -0.047618 80 85 SH5457 5457 snR32 5' 24.163847 94.01169 59.0877685 1.771497589 -0.047626 43 68 SH13842 13842 MT COB Cytbi2 31.307587 146.508032 31.307587 116.200445 73.754016 1.867785673 -0.047648 179 8 SH21548 21548 copy of SH4257 25.686873 103.472222 64.5795475 1.810094998 -0.047662 51 34 SH21078 21078 YMR230W spliced 71.837668 176.268021 124.0528445 2.093606727 -0.047699 92 46 SH7453 7453 snR69 3' 23.852581 91.661311 57.756946 1.761604221 -0.047719 19 32 SH11593 11593 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4851 4864 2190.569126 2955.273398 2572.921262 3.410426496 -0.047746 72 77 SH16688 16688 YGL030W_7_439087_439634_INTRON_4_233 intron 23.268646 109.508948 23.268646 87.240302 55.254474 1.742367449 -0.047803 48 21 SH20076 20076 YCR031C spliced 29.195491 113.047247 71.121369 1.852000108 -0.047817 84 88 SH15307 15307 YAL001C_1_151163_147591_INTRON_71_160 intron 23.904127 114.967958 23.904127 92.063831 57.983979 1.763308014 -0.047866 102 41 SH6874 6874 snR56 snR56 1 23 72.416927 177.153162 124.7850445 2.096162538 -0.047867 208 11 SH8087 8087 snoRNA cluster 2 3' 23.488307 111.404967 23.488307 88.91666 56.2024835 1.749755507 -0.047867 19 15 SH12079 12079 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7281 7299 25.452107 102.296412 63.8742595 1.805325878 -0.047886 145 70 SH18869 18869 YNR053C_14_723108_721117_INTRON_811_1341 intron 26.65046 133.435214 26.65046 107.784754 67.217607 1.827483047 -0.047888 111 16 SH19009 19009 YOR182C_15_678792_678190_INTRON_4_414 intron 23.286749 109.67193 23.286749 87.385181 55.335965 1.743007488 -0.047889 153 82 SH19007 19007 YOR182C_15_678792_678190_INTRON_4_414 5' exon 27.687262 136.681706 27.687262 109.994444 68.840853 1.837846243 -0.047897 136 45 SH1052 1052 Gly3 5' flank - tRNA12 12 78.220722 185.865486 132.043104 2.120715725 -0.04793 207 53 SH5963 5963 snR36 snR36 271 287 24.05021 93.179187 58.6146985 1.768006535 -0.047963 165 50 SH9490 9490 RUF2 3' 34.497769 120.904884 77.7013265 1.890428433 -0.047974 102 89 SH21262 21262 YPL079W spliced 34.216059 120.497607 77.356833 1.888498681 -0.047984 39 22 SH5154 5154 snR13 5' 35.622851 122.520485 79.071668 1.8980209 -0.048005 82 53 SH4607 4607 snR3 5' 21.853852 77.139065 49.4964585 1.694574126 -0.048011 51 30 SH12784 12784 MT COX1 COX1ai1 24.581403 120.844781 24.581403 97.263378 60.9223905 1.784776936 -0.048036 158 10 SH6059 6059 snR37 snR37 211 228 24.96092 99.820183 62.3905515 1.795118825 -0.048046 67 78 SH19683 19683 SIR1 2.4 143.957545 283.61919 213.7883675 2.329984071 -0.048048 179 54 SH864 864 Glu2 3' flank 22.65391 82.673603 52.6637565 1.721511834 -0.048072 189 96 SH12911 12911 MT COX1 COX1ai2 26.025551 130.259396 26.025551 105.233845 65.629698 1.817100406 -0.048078 77 24 SH4813 4813 snR5 3' 23.814369 91.409365 57.611867 1.760511949 -0.0481 179 51 SH16428 16428 YER074W_5_306319_307192_INTRON_4_469 intron 41.555537 172.035911 41.555537 131.480374 86.5179555 1.937106248 -0.048106 32 9 SH19136 19136 YPL075W_16_412249_415357_INTRON_9_759 intron 24.352989 118.860493 24.352989 95.507504 59.9302465 1.777646064 -0.048116 142 23 SH20954 20954 YML024W spliced 116.061799 242.680154 179.3709765 2.253752172 -0.048127 211 52 SH20820 20820 YKR057W spliced 39.321773 128.126379 83.724076 1.922850363 -0.048182 90 39 SH16001 16001 YDL137W_4_216158_217074_INTRON_1_332 intron 24.01786 115.974104 24.01786 92.956244 58.487052 1.767059732 -0.0482 92 50 SH12699 12699 MT ORF 8 (hypothetical) ORF8 23.966276 115.53161 23.966276 92.565334 58.265805 1.765413751 -0.0482 179 63 SH20785 20785 YKL081W spliced 22.073594 78.643444 50.358519 1.702072949 -0.048203 59 31 SH9403 9403 RUF1 3' 27.169681 108.914665 68.042173 1.832778175 -0.048211 113 99 SH18938 18938 YOL121C_15_92849_92025_INTRON_21_410 intron 21.161348 92.753248 21.161348 72.5919 46.876624 1.670956327 -0.048214 197 16 SH4440 4440 telomerase RNA telomerase 1236 1253 23.87756 91.896663 57.8871115 1.762581879 -0.048219 208 50 SH21641 21641 copy of SH8351 26.326645 106.787725 66.557185 1.823194945 -0.04823 167 19 SH6012 6012 snR37 5' 21.594785 75.417784 48.5062845 1.68579801 -0.048233 40 85 SH15979 15979 YDL136W_4_217600_218367_INTRON_4_408 intron 24.485666 120.028803 24.485666 96.543137 60.5144015 1.781858742 -0.048247 61 21 SH15809 15809 YDL061C_4_341182_340627_INTRON_1_408 intron 21.569403 95.82031 21.569403 75.250907 48.410155 1.684936473 -0.048265 204 99 SH21122 21122 YNL112W spliced 27.639477 109.915035 68.777256 1.837444845 -0.048267 150 23 SH7385 7385 snR68 3' 26.773083 108.070817 67.42195 1.828801309 -0.048284 56 14 SH5278 5278 snR30 snR30 241 257 22.971492 85.050457 54.0109745 1.732482013 -0.048303 97 78 SH17309 17309 YHR203C_8_505526_504472_INTRON_15_283 intron 34.107461 153.466596 34.107461 120.359135 77.233298 1.88780458 -0.048311 11 8 SH13354 13354 MT COX1 intronic 25.031466 124.230593 25.031466 100.199127 62.6152965 1.796680441 -0.048329 154 93 SH12276 12276 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.524423 127.223983 25.524423 102.69956 64.1119915 1.806939268 -0.048329 56 26 SH12086 12086 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7316 7333 116.592594 243.503158 180.047876 2.255388002 -0.048367 182 100 SH5751 5751 snR35 5' 24.644372 97.788653 61.2165125 1.786868584 -0.048398 193 37 SH15970 15970 YDL130W_4_229906_230527_INTRON_115_415 3' exon 109.843945 342.355539 109.843945 233.511594 171.6777695 2.234714062 -0.048468 212 19 SH8815 8815 LSR1 / U2 RNA U2 716 733 28.9844 112.739313 70.8618565 1.850412526 -0.04848 64 86 SH591 591 Gln1 5' flank - tRNA13 5' flank 13 70.436779 174.233928 122.3353535 2.087551981 -0.048496 154 88 SH17330 17330 YIL018W_9_316766_317930_INTRON_5_404 5' exon 23.557623 112.063928 23.557623 89.506305 56.531964 1.752294074 -0.048499 28 23 SH5643 5643 snR34 snR34 136 153 23.680152 90.441676 57.060914 1.756338724 -0.048525 188 22 SH100 100 Ala2 3' flank 25.784504 104.041492 64.912998 1.812331667 -0.048544 30 25 SH8046 8046 snoRNA cluster 2 intergenic 24.115148 116.844583 24.115148 93.729435 58.9222915 1.770279628 -0.04855 97 20 SH15996 15996 YDL137W_4_216158_217074_INTRON_1_332 5' exon 25.955261 129.870374 25.955261 104.915113 65.435187 1.815811348 -0.048568 84 21 SH5854 5854 snR35 snR35 456 478 25.860941 104.434006 65.1474735 1.813897578 -0.048575 135 62 SH4997 4997 snR10 snR10 16 30 31.745578 116.892339 74.3189585 1.871099615 -0.048575 199 93 SH10036 10036 RUF6 RUF6 26 43 25.544241 102.820311 64.182276 1.807415114 -0.048576 87 4 SH1512 1512 Leu3 tRNA-exon/intron 31 48 23.763491 91.075169 57.41933 1.759058121 -0.048616 134 41 SH464 464 Asp1 3' flank 45.297427 137.072143 91.184785 1.959922378 -0.048628 163 2 SH13466 13466 MT COX1 intronic 22.531567 103.360006 22.531567 81.828439 52.180003 1.7175041 -0.048654 197 32 SH5203 5203 snR13 3' 26.53915 107.588979 67.0640645 1.826489871 -0.048655 177 61 SH8324 8324 snoRNA cluster4 intergenic 23.193965 108.94747 23.193965 86.753505 54.973735 1.740155245 -0.048657 175 71 SH8611 8611 snR19 / U1 RNA U1 551 569 23.965962 92.606489 58.2862255 1.765565932 -0.048658 47 85 SH11972 11972 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6746 6764 545.07707 859.821723 702.4493965 2.846615044 -0.048665 173 66 SH15464 15464 YBL087C_2_60732_59815_INTRON_43_546 intron 26.057973 130.506222 26.057973 105.448249 65.753111 1.817916306 -0.048666 87 11 SH21565 21565 copy of SH5225 23.798337 91.342859 57.570598 1.760200741 -0.048677 87 57 SH2827 2827 Pro7 5' flank 26.419175 107.304031 66.861603 1.825176785 -0.048726 84 52 SH18833 18833 YNL302C_14_62942_61957_INTRON_21_571 intron 25.774642 128.782563 25.774642 104.007921 64.8912815 1.812186351 -0.048749 17 5 SH13890 13890 MT COB intronic 23.352516 110.31612 23.352516 87.963604 55.65806 1.745528065 -0.048753 18 61 SH992 992 Gly2 5' flank 24.235139 94.665561 59.45035 1.774154416 -0.048753 130 92 SH18217 18217 YML025C_13_225365_224406_INTRON_28_126 intron/exon 25.946306 129.830976 25.946306 104.88467 65.415488 1.815680586 -0.048754 112 36 SH5510 5510 snR32 3' 22.756559 83.491268 53.1239135 1.725290061 -0.048756 56 51 SH17949 17949 YLR128W_12_398531_399434_INTRON_4_97 intron/exon 29.423987 141.871768 29.423987 113.447781 71.435884 1.853916423 -0.048763 125 90 SH9765 9765 RUF4 RUF4 601 622 25.151923 100.843301 62.997612 1.799324087 -0.048764 69 56 SH14245 14245 MT tRNA Ser tRNA 24.061305 116.403223 24.061305 93.341918 58.7016115 1.768650024 -0.048782 112 96 SH12602 12602 MT_15S MT_15S 56.912799 210.083602 56.912799 154.170803 105.541801 2.023424501 -0.048787 91 76 SH21366 21366 Leu1_5 spliced 24.773089 98.833198 61.8031435 1.791010565 -0.048801 161 76 SH3654 3654 Val2 tRNA 11 26 559.198567 879.402433 719.3005 2.856910362 -0.048812 171 60 SH343 343 Arg5 tRNA 51 63 39.56498 128.539123 84.0520515 1.924548318 -0.048827 195 59 SH13578 13578 MT COX1 Exon 6 23.93236 115.302247 23.93236 92.369887 58.1511235 1.76455811 -0.048846 153 90 SH17512 17512 YJL136C_10_156971_156248_INTRON_25_484 intron 23.516719 111.742869 23.516719 89.22615 56.3714345 1.751059087 -0.048855 199 102 SH8616 8616 snR19 / U1 RNA U1 576 592 23.273816 87.376881 55.3253485 1.742924158 -0.04887 119 30 SH13711 13711 MT tRNAGlu (and 5' processing site for COB) 3' 24.507118 120.278014 24.507118 96.770896 60.639007 1.782752081 -0.048871 112 81 SH2926 2926 Pro8 3' flank 26.96872 108.525611 67.7471655 1.830891129 -0.048904 204 59 SH11486 11486 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4316 4332 177.846783 333.482966 255.6648745 2.407671065 -0.048911 80 91 SH12266 12266 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.959418 129.92497 25.959418 104.965552 65.462485 1.815992487 -0.048923 40 23 SH17535 17535 YJL177W_10_90783_91654_INTRON_310_626 intron 1733.274617 4137.389652 1733.274617 2405.115035 2069.194826 3.315801384 -0.048938 162 42 SH9096 9096 snR14 / U4 RNA U4 96 112 24.38198 95.817828 60.099904 1.778873778 -0.049005 47 77 SH5674 5674 snR34 snR34 291 307 25.752342 103.915358 64.83385 1.811801812 -0.049008 179 44 SH5334 5334 snR30 snR30 521 533 25.262836 101.425303 63.3440695 1.801705961 -0.04901 188 53 SH322 322 Arg5 5' flank 31.898963 117.140344 74.5196535 1.872270827 -0.04902 10 27 SH14057 14057 MT COB Cytbi4 24.683338 121.837988 24.683338 98.15465 61.418994 1.788302699 -0.049021 96 25 SH5669 5669 snR34 snR34 266 283 26.367638 107.0649 66.716269 1.824231751 -0.049028 22 97 SH13821 13821 MT COB Cytbi2 24.308966 118.570735 24.308966 95.261769 59.7853675 1.776594903 -0.049062 201 49 SH7676 7676 snoRNA cluster1 snR78/intergenic 24.34884 118.917901 24.34884 95.569061 59.9589505 1.777854023 -0.049069 149 10 SH15767 15767 YCR097W_3_293828_294314_INTRON_106_159 5' exon 25.034906 124.311435 25.034906 100.276529 62.6557175 1.796960708 -0.049092 199 18 SH19723 19723 Negative Control 25.828617 104.312703 65.07066 1.813385212 -0.049108 21 91 SH2978 2978 Ser1 3' flank 22.261604 80.002745 51.1321745 1.708694262 -0.049122 48 97 SH10272 10272 RUF7 5' 25.483155 102.553748 64.0184515 1.806305165 -0.049125 6 38 SH13960 13960 MT COB Cytbi3 23.721813 113.531695 23.721813 90.809882 57.2658475 1.757895692 -0.049127 93 77 SH12581 12581 MT_15S MT_15S 30.542403 144.695015 30.542403 115.152612 72.8475075 1.862414697 -0.049131 73 12 SH12661 12661 MT_15S MT_15S 27.125894 135.002114 27.125894 108.87622 68.001057 1.832515663 -0.049161 59 94 SH21552 21552 copy of SH4565 28.311494 111.38111 69.846302 1.844143417 -0.04917 109 16 SH12089 12089 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7331 7348 34.266594 120.642726 77.45466 1.889047552 -0.0492 92 13 SH1371 1371 Leu1 5' flank 23.870581 91.93672 57.9036505 1.762705944 -0.049202 120 61 SH9615 9615 RUF3 3' 25.163166 100.937787 63.0504765 1.799688373 -0.049237 56 44 SH21374 21374 Leu8_9 spliced 27.699875 110.100001 68.899938 1.838218831 -0.049248 111 2 SH16372 16372 YER003C_5_159117_157735_INTRON_32_124 intron 24.009387 116.001976 24.009387 92.992589 58.500988 1.767163201 -0.049255 160 80 SH7481 7481 snR71 snR71 21 36 65.738386 167.306997 116.5226915 2.066410508 -0.049272 200 18 SH14038 14038 MT COB Cytbi4 23.556877 112.130518 23.556877 89.573641 56.565259 1.75254978 -0.049279 45 76 SH9211 9211 snR6 / U6 RNA 5' 50.442173 144.725458 97.5838155 1.989377795 -0.049289 9 73 SH4321 4321 telomerase RNA telomerase 641 660 23.10876 86.169307 54.6390335 1.737503009 -0.0493 126 85 SH1897 1897 Lys1 5' flank 25.860552 104.494231 65.1773915 1.814096975 -0.049334 167 52 SH3166 3166 Ser5 5' flank 22.362827 80.718518 51.5406725 1.712150081 -0.049357 104 65 SH10753 10753 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 651 668 86.18812 197.998879 142.0934995 2.15257421 -0.049362 28 85 SH19622 19622 RNA14 1.1 25.610565 103.22414 64.4173525 1.809002872 -0.049395 65 43 SH1190 1190 Ile1 5' flank 30.792353 115.538724 73.1655385 1.864306573 -0.049395 31 89 SH5712 5712 snR34 snR34 481 496 25.359249 101.948017 63.653633 1.803823196 -0.049426 128 32 SH3271 3271 Thr2 5' flank 106.281572 228.305326 167.293449 2.223478935 -0.049427 135 63 SH11847 11847 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6121 6139 4585.478246 5655.538879 5120.508563 3.709313097 -0.049444 95 85 SH5612 5612 snR34 5' 28.278684 111.329884 69.804284 1.843882077 -0.049465 86 51 SH9254 9254 snR6 / U6 RNA 3' 23.740358 90.981046 57.360702 1.758614458 -0.049469 47 76 SH16538 16538 YER131W_5_423587_424307_INTRON_1_361 intron 21.766735 97.434572 21.766735 76.667837 49.217286 1.692117662 -0.049504 7 14 SH14002 14002 MT COB intronic 23.043498 107.740862 23.043498 85.697364 54.370431 1.735362776 -0.049507 152 61 SH5581 5581 snR33 3' 22.905695 84.66871 53.7872025 1.730678957 -0.049538 178 22 SH11217 11217 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2971 2992 28.94954 112.731599 70.8405695 1.850282044 -0.049556 82 94 SH41 41 Ala1 3' flank 62.692226 162.769076 112.730651 2.052042015 -0.04958 143 80 SH21333 21333 YPR063C spliced 29.043209 112.910689 70.976949 1.851117327 -0.04959 128 6 SH7728 7728 snoRNA cluster1 intergenic 25.059616 124.503326 25.059616 100.44371 62.751663 1.79762524 -0.049626 164 54 SH2370 2370 Phe4 5' flank 22.347542 80.636096 51.491819 1.711738234 -0.04964 109 48 SH15268 15268 MT 9S rRNA 9S 23.639625 112.887224 23.639625 90.247599 56.943612 1.755445011 -0.049704 77 60 SH6190 6190 snR40 snR40 11 27 35.475088 122.409574 78.942331 1.897309946 -0.049721 183 75 SH10242 10242 RUF6 3' 23.747093 91.056923 57.402008 1.758927085 -0.04974 203 97 SH12850 12850 MT COX1 COX1ai1 23.521342 111.866846 23.521342 89.345504 56.433423 1.751536393 -0.049754 193 95 SH16073 16073 YDR025W_4_491510_492319_INTRON_46_384 5' exon 27.586327 136.477244 27.586327 109.890917 68.738622 1.837200822 -0.049781 62 26 SH11172 11172 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2746 2763 64.96418 166.199788 115.581984 2.062890145 -0.04981 128 8 SH6416 6416 snR45 5' 30.989279 115.853761 73.42152 1.865823371 -0.049818 47 7 SH19444 19444 YPR187W_16_911252_911795_INTRON_21_96 3' exon 25.098433 124.756446 25.098433 100.658013 62.878223 1.79850026 -0.049849 56 37 SH20357 20357 YER117W spliced 25.556588 102.986534 64.271561 1.808018848 -0.049857 35 99 SH6071 6071 snR37 snR37 271 287 24.263504 94.99462 59.629062 1.775457978 -0.049901 195 101 SH14973 14973 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.971203 130.079798 25.971203 105.108595 65.539899 1.816505768 -0.049927 58 90 SH21474 21474 copyu of SH1441 27.989592 110.750871 69.3702315 1.841173144 -0.049932 52 79 SH21674 21674 copy of SH9837 23.102923 86.183304 54.6431135 1.737535437 -0.049943 131 49 SH1139 1139 His1 5' flank 29.281541 113.295136 71.2883385 1.853018493 -0.049943 148 39 SH15998 15998 YDL137W_4_216158_217074_INTRON_1_332 exon/intron 25.251362 125.692781 25.251362 101.441419 63.3463905 1.801721874 -0.049945 175 51 SH2774 2774 Pro6 5' flank 24.7583 98.836291 61.7972955 1.790969469 -0.049972 28 54 SH3103 3103 Ser4 5' flank 24.676045 98.194091 61.435068 1.788416343 -0.049977 127 52 SH1895 1895 Lys1 5' flank 29.94299 114.30182 72.122405 1.8580702 -0.049988 74 79 SH17146 17146 YHR010W_8_126513_127484_INTRON_32_592 3' exon 24.266342 118.295093 24.266342 95.028751 59.6475465 1.775592584 -0.050028 141 31 SH18818 18818 YNL302C_14_62942_61957_INTRON_21_571 intron 23.219283 109.291758 23.219283 87.072475 55.145879 1.741513064 -0.05006 41 73 SH18989 18989 YOR096W_15_505793_506766_INTRON_145_545 3' exon 160.148249 466.842644 160.148249 307.694395 233.921322 2.36906981 -0.050085 74 5 SH7704 7704 snoRNA cluster1 intergenic/snR77 22.681552 104.735246 22.681552 83.053694 52.867623 1.723189784 -0.050103 93 7 SH17190 17190 YHR021C_8_148660_147862_INTRON_4_553 intron 24.263559 118.278636 24.263559 95.015077 59.639318 1.775532668 -0.050106 155 26 SH21852 21852 copy of SH17602 22.883908 84.557309 53.7206085 1.730140923 -0.050116 203 50 SH13736 13736 MT COB Exon1 24.293694 118.542167 24.293694 95.248473 59.7710835 1.776491129 -0.050126 129 93 SH8826 8826 LSR1 / U2 RNA U2 771 791 22.020686 78.438041 50.2293635 1.700957675 -0.050157 156 48 SH2257 2257 Phe1 3' flank 24.730738 98.640108 61.685423 1.790182547 -0.050164 58 62 SH12797 12797 MT COX1 COX1ai1 23.700771 113.450287 23.700771 90.749516 57.2251435 1.75758689 -0.050174 89 25 SH11657 11657 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5171 5186 1641.519102 2293.566983 1967.543043 3.293924242 -0.05019 5 39 SH472 472 Asp2 5' flank 28.219254 111.248669 69.7339615 1.843444338 -0.050197 98 15 SH17914 17914 YLR061W_12_263195_263949_INTRON_13_401 intron 30.186434 143.871163 30.186434 114.684729 72.4355815 1.859951951 -0.050289 160 21 SH6369 6369 snR43 snR43 86 103 22.185278 79.574747 50.8800125 1.706547209 -0.050311 63 61 SH18510 18510 YMR201C_13_667043_665844_INTRON_28_111 5' exon 27.789159 137.141903 27.789159 110.352744 69.0709515 1.839295439 -0.050345 116 99 SH12566 12566 MT_15S MT_15S 28.677401 139.893817 28.677401 112.216416 70.4469085 1.847861939 -0.050386 165 78 SH5582 5582 snR33 3' 22.549496 82.105857 52.3276765 1.718731451 -0.050399 54 16 SH20314 20314 YER007C-A spliced 33.295208 119.291574 76.293391 1.882486918 -0.050404 90 14 SH8079 8079 snoRNA cluster 2 snR61/3' 22.733557 105.200321 22.733557 83.466764 53.1001605 1.725095834 -0.050427 10 66 SH16873 16873 YGL187C_7_150529_149708_INTRON_1_342 intron 24.269339 118.360457 24.269339 95.091118 59.6802285 1.775830477 -0.050431 43 93 SH17633 17633 YJR094W-A_10_608000_608553_INTRON_3_277 intron 36.457954 159.420093 36.457954 123.962139 80.2100465 1.904228768 -0.050448 57 32 SH13134 13134 MT COX1 COX1ai3 25.577132 127.716452 25.577132 103.13932 64.358226 1.808604064 -0.050452 90 22 SH15567 15567 YBR084C-A_2_415219_414144_INTRON_3_508 intron 23.183141 109.018749 23.183141 86.835608 55.0093745 1.740436707 -0.050462 177 85 SH21170 21170 YNL312W spliced 25.970976 105.153339 65.5621575 1.816653237 -0.050484 138 7 SH14410 14410 MT 21S rRNA 21S rRNA3 148.381445 437.890663 148.381445 290.509218 219.4453315 2.341326346 -0.050488 12 33 SH9845 9845 RUF5-1 RUF5-1 31 52 25.156161 101.001508 63.0788345 1.79988366 -0.05049 61 62 SH18920 18920 YOL121C_15_92849_92025_INTRON_21_410 intron 23.752589 113.921479 23.752589 91.16889 57.4607395 1.759371211 -0.050495 84 73 SH18044 18044 YLR333C_12_796335_795573_INTRON_1_423 intron 43.166807 176.174345 43.166807 134.007538 88.5871725 1.94737084 -0.050505 38 51 SH4466 4466 telomerase RNA 3' 26.398249 107.35431 66.8762795 1.825272104 -0.050599 29 37 SH13636 13636 MT ATP6 ATP6 27.111353 135.040402 27.111353 108.929049 68.020201 1.832637911 -0.050612 170 51 SH9055 9055 snR17a / U3a 3' 22.4887 81.69411 52.091405 1.716766071 -0.050633 56 38 SH16591 16591 YFL034C-A_6_64931_64242_INTRON_13_333 intron 22.569805 103.846628 22.569805 82.276823 52.423314 1.719524472 -0.05065 186 48 SH7104 7104 snR63 snR63 26 43 27.90333 110.611628 69.257479 1.840466679 -0.050653 163 95 SH19509 19509 ACT1 25.009422 100.272338 62.64088 1.79685785 -0.05068 30 82 SH19302 19302 YPL198W_16_173151_174701_INTRON_12_420 intron 23.622868 112.842588 23.622868 90.21972 56.921294 1.755274764 -0.050757 82 91 SH1464 1464 Leu2 tRNA 91 108 23.930246 92.536439 58.2333425 1.765171719 -0.05077 109 6 SH1978 1978 Lys2 3' flank 28.346713 111.549882 69.9482975 1.844777148 -0.050778 79 9 SH6135 6135 snR39B snR39B 16 28 24.506777 96.960148 60.7334625 1.783428042 -0.050802 157 11 SH9366 9366 RUF1 RUF1 406 421 24.907281 99.765255 62.336268 1.794740798 -0.05081 41 87 SH17586 17586 YJL191W_10_73786_74610_INTRON_11_418 intron 24.007339 116.135839 24.007339 93.1285 58.5679195 1.767659797 -0.050841 119 92 SH9409 9409 RUF1 3' 22.109301 79.098866 50.6040835 1.704185564 -0.050865 30 36 SH17478 17478 YJL001W_10_434855_435618_INTRON_66_181 intron 24.970074 124.059447 24.970074 100.089373 62.5297235 1.796086508 -0.050888 69 84 SH20479 20479 YGL226C-A spliced 24.37428 95.945273 60.1597765 1.779306214 -0.050904 210 76 SH491 491 Asp2 tRNA 16 30 1699.112791 2366.097834 2032.605313 3.308053056 -0.050914 33 23 SH7262 7262 snR65 86-100 + 3' 86 30.369603 114.994462 72.6820325 1.861427064 -0.050924 183 83 SH8808 8808 LSR1 / U2 RNA U2 681 695 26.169816 106.208687 66.1892515 1.82078747 -0.050925 78 32 SH13558 13558 MT COX1 Exon 6 23.831582 114.636498 23.831582 91.804916 57.818249 1.762064935 -0.050928 16 11 SH19306 19306 YPL198W_16_173151_174701_INTRON_12_420 intron 27.893196 137.500231 27.893196 110.607035 69.2501155 1.840420502 -0.050939 53 69 SH14940 14940 MT tRNA Asn 3' 27.567493 136.486675 27.567493 109.919182 68.7433375 1.837230613 -0.050949 52 92 SH13369 13369 MT COX1 intronic 25.546945 127.573642 25.546945 103.026697 64.286821 1.80812195 -0.050961 20 84 SH15065 15065 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.383985 119.410484 24.383985 96.026499 60.205242 1.779634306 -0.050968 29 26 SH14058 14058 MT COB Cytbi4 24.216103 117.951883 24.216103 94.73578 59.4759415 1.774341326 -0.050978 165 28 SH2207 2207 Phe1 5' flank 22.642507 82.843413 52.74296 1.722164499 -0.051005 79 48 SH20335 20335 YER074W-A spliced 23.570649 89.854282 56.7124655 1.753678528 -0.051141 117 104 SH9813 9813 RUF4 3' 25.525568 102.933564 64.229566 1.807734987 -0.051157 104 91 SH15799 15799 YDL061C_4_341182_340627_INTRON_1_408 intron 23.130783 108.634672 23.130783 86.503889 54.817336 1.738917926 -0.051166 166 74 SH4744 4744 snR4 3' 24.337947 95.696516 60.0172315 1.778275958 -0.051223 152 68 SH17784 17784 YKL180W_11_109271_110131_INTRON_310_615 intron/exon 22.667164 104.711949 22.667164 83.044785 52.8559745 1.723094084 -0.051225 104 4 SH7085 7085 snR63 5' 22.705247 83.327293 53.01627 1.724409169 -0.051232 134 39 SH16947 16947 YGR027C_7_534779_534126_INTRON_1_312 intron 23.516084 111.960684 23.516084 89.4446 56.480342 1.751897318 -0.051245 129 42 SH21036 21036 YMR125W spliced 40.549783 130.191842 85.3708125 1.931309415 -0.051303 181 56 SH3453 3453 Trp1 96-106 + 3' flank 96 22.533627 82.06733 52.3004785 1.718505662 -0.051309 178 39 SH12736 12736 MT COX1 Exon1 23.329452 110.358544 23.329452 88.029092 55.679272 1.745693548 -0.051371 77 69 SH16396 16396 YER044C-A_5_239773_238459_INTRON_64_151 3' exon 24.044045 116.50813 24.044045 93.464085 58.754065 1.769037919 -0.051428 164 6 SH18010 18010 YLR287C-A_12_713158_712537_INTRON_4_433 intron 22.625788 104.38284 22.625788 82.757052 52.69142 1.721739903 -0.051433 106 58 SH14844 14844 MT tRNA Asp 3' 25.402914 126.734838 25.402914 102.331924 63.867419 1.805279366 -0.051445 158 9 SH10549 10549 RUF8 RUF8 671 692 22.897029 84.775317 53.836173 1.73107418 -0.051471 164 65 SH2818 2818 Pro6 3' flank 26.319117 107.020888 66.6700025 1.823930471 -0.051471 135 49 SH7783 7783 snoRNA cluster1 intergenic 22.003571 99.430584 22.003571 78.427013 50.215292 1.700835992 -0.05149 174 24 SH14986 14986 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 22.313542 101.868174 22.313542 80.554632 51.434087 1.711251035 -0.051522 81 29 SH17941 17941 YLR093C_12_327416_326514_INTRON_17_157 3' exon 25.897886 129.765184 25.897886 104.867298 65.382592 1.815462134 -0.051552 119 33 SH10365 10365 RUF7 RUF7 436 452 27.289596 109.363749 68.3266725 1.834590271 -0.051552 46 42 SH8661 8661 LSR1 / U2 RNA 5' 22.788796 83.9756 53.382198 1.727396452 -0.051553 169 98 SH19014 19014 YOR182C_15_678792_678190_INTRON_4_414 intron 29.127158 141.274309 29.127158 113.147151 71.1371545 1.852096489 -0.051559 17 52 SH11009 11009 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1931 1944 24108.25468 24343.72721 24225.99094 4.384281551 -0.051581 26 93 SH5845 5845 snR35 snR35 411 430 22.720181 83.473442 53.0968115 1.725068442 -0.051639 158 102 SH13530 13530 MT COX1 intronic 24.412054 119.721768 24.412054 96.309714 60.360884 1.780755591 -0.05164 103 101 SH17432 17432 YIL133C_9_99416_98527_INTRON_32_321 intron 29.913064 143.262364 29.913064 114.3493 72.131182 1.858123049 -0.051664 178 79 SH1900 1900 Lys1 5' flank 27.677051 110.193522 68.9352865 1.838441585 -0.051673 69 57 SH15883 15883 YDL082W_4_308423_309387_INTRON_5_369 intron 23.006383 107.619377 23.006383 85.612994 54.3096885 1.734877312 -0.051676 68 4 SH7768 7768 snoRNA cluster1 snR76 29.267586 141.637284 29.267586 113.369698 71.318642 1.853203065 -0.051693 205 11 SH21232 21232 YOR293W spliced 25.908397 104.935375 65.421886 1.81572306 -0.051725 29 96 SH17483 17483 YJL024C_10_396288_395627_INTRON_23_99 5' exon 24.647821 121.798518 24.647821 98.150697 61.399259 1.78816313 -0.051732 62 98 SH2033 2033 Lys3 3' flank 24.503926 97.030746 60.767336 1.783670198 -0.051734 32 83 SH17890 17890 YLR048W_12_242233_243350_INTRON_91_449 intron 23.667457 113.312191 23.667457 90.644734 57.1560955 1.757062553 -0.051735 89 26 SH16283 16283 YDR447C_4_1355542_1354818_INTRON_4_317 intron 22.479941 103.20914 22.479941 81.729199 52.10457 1.716875816 -0.051796 67 40 SH16731 16731 YGL076C_7_365994_364333_INTRON_565_1032 exon/intron 40.386505 169.365571 40.386505 129.979066 85.1827855 1.930351838 -0.051803 118 14 SH3153 3153 Ser4 3' flank 22.830696 84.313207 53.5719515 1.728937467 -0.051844 102 11 SH14405 14405 MT 21S rRNA 21S rRNA3 22.534526 103.65514 22.534526 82.120614 52.32757 1.718730567 -0.051852 184 49 SH21471 21471 copy of SH1241 25.399725 102.3517 63.8757125 1.805335757 -0.051894 176 69 SH14213 14213 MT ATP9 5'/ATP9 24.030008 116.433131 24.030008 93.403123 58.7165655 1.768760645 -0.051908 70 9 SH14014 14014 MT COB intron/exon4 25.125502 125.083769 25.125502 100.958267 63.0418845 1.799629187 -0.051909 118 101 SH12331 12331 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.742773 113.973911 23.742773 91.231138 57.4869555 1.759569309 -0.05195 151 6 SH19279 19279 YPL143W_16_282121_282969_INTRON_20_544 intron 25.068797 124.744219 25.068797 100.675422 62.8721095 1.798458032 -0.051973 168 58 SH14407 14407 MT 21S rRNA 21S rRNA3 36.738478 160.226731 36.738478 124.488253 80.6133655 1.906407053 -0.051983 61 54 SH2636 2636 Pro3 3' flank 24.680588 98.43394 61.557264 1.789279309 -0.052003 13 31 SH14348 14348 MT VAR1 includes 5’ processing site 3' 24.994535 124.295792 24.994535 100.301257 62.647896 1.79690649 -0.052006 55 77 SH4316 4316 telomerase RNA telomerase 616 630 29.969819 114.454663 72.212241 1.858610823 -0.05202 202 18 SH7554 7554 snR79 3' 40.276423 129.827697 85.05206 1.929684837 -0.052025 131 103 SH948 948 Gly1 5' flank - tRNA7 7 38.524205 127.189341 82.856773 1.918328015 -0.052028 106 77 SH7759 7759 snoRNA cluster1 snR76 23.983283 116.043555 23.983283 93.060272 58.5217775 1.767317509 -0.052043 20 29 SH6670 6670 snR48 3' 28.360922 111.655804 70.008363 1.845149923 -0.052064 23 103 SH6595 6595 snR47 snR47 81 97 24.719161 98.742974 61.7310675 1.790503787 -0.052075 117 75 SH16609 16609 YFL034C-B_6_63992_63015_INTRON_21_134 intron 24.148866 117.47645 24.148866 94.327584 59.238225 1.772602037 -0.052081 211 38 SH13244 13244 MT COX1 COX1-ai4 28.535773 139.560052 28.535773 112.024279 70.280026 1.846831913 -0.052116 175 92 SH16556 16556 YER133W_5_432491_433954_INTRON_178_702 intron 22.02218 99.626121 22.02218 78.603941 50.3130605 1.701680736 -0.052122 182 55 SH17053 17053 YGR214W_7_920570_921783_INTRON_91_545 intron 24.698943 122.288648 24.698943 98.589705 61.644324 1.789893094 -0.052124 106 74 SH11117 11117 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2471 2487 327.549442 553.486008 440.517725 2.643963388 -0.052131 139 16 SH13036 13036 MT COX1 COX1ai2 22.630202 104.483985 22.630202 82.853783 52.7419925 1.722156533 -0.052173 9 40 SH11237 11237 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3071 3087 27571.48606 27406.48276 27488.98441 4.439158695 -0.052178 47 33 SH3617 3617 Val1 3' flank 22.925186 85.050905 53.9880455 1.732297605 -0.052202 146 81 SH13803 13803 MT COB intronic 25.177865 125.425634 25.177865 101.247769 63.212817 1.800805145 -0.052205 24 29 SH17269 17269 YHR123W_8_354817_356083_INTRON_51_141 intron 58.556923 214.45481 58.556923 156.897887 107.727405 2.032326198 -0.052246 145 75 SH21772 21772 copy of SH13812 22.828457 84.332028 53.5802425 1.729004675 -0.052247 88 45 SH18794 18794 YNL301C_14_64561_63569_INTRON_113_544 intron 124.316974 378.772314 124.316974 255.45534 189.886157 2.278493305 -0.052292 49 50 SH12633 12633 MT_15S MT_15S 51.73014 197.568587 51.73014 146.838447 99.2842935 1.99688055 -0.052329 125 9 SH1058 1058 Gly3 tRNA 26 40 26.875305 108.523091 67.699198 1.830583524 -0.052335 183 24 SH9244 9244 snR6 / U6 RNA U6 91 110 25.521913 103.010302 64.2661075 1.807981996 -0.052338 108 20 SH8926 8926 snR17a / U3a 5' 23.083894 86.257881 54.6708875 1.737756124 -0.05236 87 12 SH675 675 Gln3 5' flank 23.772728 91.498571 57.6356495 1.760691192 -0.052394 7 35 SH9860 9860 RUF5-1 RUF5-1 106 127 27.921294 110.752958 69.337126 1.840965836 -0.052414 209 9 SH6002 6002 snR37 5' 23.697138 90.931302 57.31422 1.758262386 -0.052417 128 47 SH14015 14015 MT COB Exon4 26.660731 133.727583 26.660731 108.066852 67.3637915 1.828426523 -0.052426 101 4 SH19370 19370 YPR028W_16_623522_624197_INTRON_52_184 3' exon 24.839093 123.385421 24.839093 99.546328 62.1927105 1.793739485 -0.052427 197 62 SH19610 19610 RNA14 1.1 26.205248 106.518191 66.3617195 1.821917631 -0.052454 81 54 SH16349 16349 YDR500C_4_1450856_1450201_INTRON_8_396 intron 44.083712 178.610957 44.083712 135.527245 89.8054785 1.953302831 -0.052472 91 6 SH10739 10739 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 581 598 26.100409 105.985644 66.0430265 1.819826967 -0.052524 157 4 SH18113 18113 YLR367W_12_855877_857316_INTRON_698_1180 intron 31.061181 146.173096 31.061181 116.111915 73.586548 1.86679843 -0.052528 175 21 SH1421 1421 Leu1 3' flank 26.344889 107.242493 66.793691 1.824735443 -0.05253 214 100 SH20822 20822 YKR057W spliced 33.881419 120.278181 77.0798 1.886940579 -0.052536 70 13 SH2543 2543 Pro2 5' flank 23.25577 87.575838 55.415804 1.743633639 -0.052541 199 92 SH9466 9466 RUF2 RUF2 171 187 27.719198 110.33803 69.028614 1.839029153 -0.052618 96 22 SH12399 12399 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.238597 149.083979 32.238597 117.845382 75.0419895 1.875304339 -0.052638 135 100 SH17827 17827 YKR057W_11_551293_551878_INTRON_25_346 3' exon 29.702512 142.787055 29.702512 114.084543 71.8935275 1.856689793 -0.052641 33 79 SH12594 12594 MT_15S MT_15S 23.617965 112.978233 23.617965 90.360268 56.9891165 1.755791924 -0.052671 139 50 SH18921 18921 YOL121C_15_92849_92025_INTRON_21_410 intron 22.269916 101.619015 22.269916 80.349099 51.3095075 1.710197846 -0.052697 129 100 SH5259 5259 snR30 snR30 146 158 26.407714 107.536846 66.97228 1.825895084 -0.052714 41 28 SH5001 5001 snR10 snR10 36 51 25.654593 103.719318 64.6869555 1.810816711 -0.052727 10 62 SH20086 20086 YCR097W spliced 24.248598 95.156445 59.7025215 1.775992674 -0.052734 48 23 SH14284 14284 MT VAR1 includes 5’ processing site VAR1 23.022942 107.858213 23.022942 85.835271 54.4291065 1.735831205 -0.052766 76 27 SH14870 14870 MT tRNA Ser2; tRNA Arg2 3' 23.743671 114.059214 23.743671 91.315543 57.529607 1.759891407 -0.052779 143 16 SH10149 10149 RUF6 RUF6 591 614 24.808538 99.420724 62.114631 1.79319391 -0.0528 204 90 SH968 968 Gly1 3' flank 22.276452 80.403681 51.3400665 1.710456427 -0.052814 170 22 SH8062 8062 snoRNA cluster 2 intergenic/snR61 75.822356 257.56624 75.822356 182.743884 129.28312 2.111541824 -0.052821 201 53 SH10510 10510 RUF8 RUF8 476 497 24.249515 95.174022 59.7117685 1.776059934 -0.052842 44 4 SH7817 7817 snoRNA cluster1 intergenic 25.398988 126.823187 25.398988 102.424199 63.9115935 1.805579646 -0.052843 83 57 SH859 859 Glu2 61-72 + 3' flank 61 32.533279 118.302604 75.4179415 1.877474674 -0.052888 61 15 SH9266 9266 RUF1 5' 49.34843 143.381327 96.3648785 1.983918778 -0.05289 81 8 SH5680 5680 snR34 snR34 321 336 166.579362 317.728447 242.1539045 2.384091476 -0.052891 156 102 SH6461 6461 snR45 151-172 + 3' 151 22.701556 83.446627 53.0740915 1.724882569 -0.052914 157 56 SH14272 14272 MT VAR1 includes 5’ processing site VAR1 24.70565 122.428185 24.70565 98.722535 61.7140925 1.790384347 -0.052917 190 33 SH6381 6381 snR43 snR43 146 165 24.387548 96.246236 60.316892 1.780438955 -0.052917 64 53 SH13516 13516 MT COX1 intronic 38.459954 164.610486 38.459954 127.150532 82.805243 1.918057836 -0.052921 137 42 SH20986 20986 YML067C spliced 25.820079 104.581985 65.201032 1.81425447 -0.052927 77 6 SH12597 12597 MT_15S MT_15S 22.983951 107.542903 22.983951 85.558952 54.2714515 1.734571437 -0.052955 110 65 SH463 463 Asp1 3' flank 25.359622 102.232988 63.796305 1.804795526 -0.05296 19 58 SH8698 8698 LSR1 / U2 RNA U2 131 146 550.432142 869.649882 710.041012 2.851283434 -0.052963 69 75 SH1831 1831 Leu8 3' flank 24.094961 94.004859 59.04991 1.77121924 -0.05301 27 26 SH12536 12536 MT_ORF6 + ORF7 (hypothetical) ORF6/7 26.172281 131.573559 26.172281 106.401278 66.2867795 1.82142692 -0.053083 78 88 SH12742 12742 MT COX1 COX1ai1 24.351143 119.334232 24.351143 95.983089 60.167116 1.779359195 -0.053102 183 37 SH3711 3711 Val3 tRNA 36 48 107.752783 231.017775 169.385279 2.228875664 -0.053112 19 100 SH11818 11818 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5976 5994 24.124005 94.238621 59.181313 1.772184596 -0.053129 106 76 SH3512 3512 Tyr1 3' flank 24.016867 93.421653 58.71926 1.768780574 -0.053147 65 81 SH16903 16903 YGL226C-A_7_73156_72747_INTRON_22_170 3' exon 24.020369 116.469046 24.020369 93.448677 58.734523 1.768893446 -0.05315 164 68 SH18231 18231 YML026C_13_223828_222987_INTRON_48_448 intron 24.220065 118.200417 24.220065 94.980352 59.6002085 1.775247779 -0.053178 192 48 SH21207 21207 YOR096W spliced 26.244191 106.781381 66.512786 1.822905139 -0.053207 157 36 SH20064 20064 YBR230C spliced 24.644635 98.275316 61.4599755 1.788592383 -0.053216 63 30 SH2941 2941 Ser1 5' flank 26.335518 107.253483 66.7945005 1.824740706 -0.053234 133 70 SH529 529 Cys1 5' flank 22.576977 82.556197 52.566587 1.72070978 -0.053277 65 55 SH3287 3287 Thr2 tRNA 36 48 1219.517495 1761.713127 1490.615311 3.173365578 -0.053287 85 61 SH18142 18142 YLR406C_12_931752_931062_INTRON_58_406 intron 51.033991 195.934571 51.033991 145.90058 98.4672855 1.993291966 -0.053332 115 12 SH2945 2945 Ser1 5' flank 23.083187 86.340898 54.7120425 1.738082928 -0.053338 138 79 SH12955 12955 MT COX1 COX1ai2 24.340158 119.263033 24.340158 95.922875 60.1315165 1.779102157 -0.053353 129 25 SH4986 4986 snR10 5' 23.357712 88.427882 55.892797 1.747355843 -0.053356 185 35 SH3101 3101 Ser4 5' flank 24.184441 94.724639 59.45454 1.774185023 -0.053363 85 15 SH1245 1245 Ile2 5' flank 193.645173 357.576543 275.610858 2.440296323 -0.053366 127 25 SH14926 14926 MT tRNA Asn 5' 23.031883 107.988921 23.031883 85.957038 54.4944605 1.736352357 -0.053372 152 101 SH15099 15099 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 22.985722 107.597257 22.985722 85.611535 54.2986285 1.73478886 -0.053394 203 13 SH5566 5566 snR33 snR33 116 132 23.65692 90.72065 57.188785 1.75731087 -0.053402 203 62 SH8539 8539 snR19 / U1 RNA U1 191 210 24.157934 94.526254 59.342094 1.773362867 -0.053415 30 91 SH13497 13497 MT COX1 intronic 25.163147 125.432753 25.163147 101.269606 63.2163765 1.800829599 -0.053422 53 7 SH20973 20973 YML034W spliced 27.547567 110.021809 68.784688 1.837491772 -0.053432 118 97 SH15021 15021 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.641865 113.252602 23.641865 90.610737 57.126301 1.756836104 -0.053437 102 63 SH20052 20052 YBR220C spliced 26.759095 108.337288 67.5481915 1.829613726 -0.053447 156 59 SH19194 19194 YPL081W_16_404945_406039_INTRON_8_508 exon/intron 63.660238 227.228719 63.660238 164.568481 114.1143595 2.057340297 -0.053463 136 26 SH9044 9044 snR17a / U3a 3' 22.617609 82.874611 52.74611 1.722190436 -0.053487 199 25 SH21851 21851 copy of SH17601 23.875927 92.384338 58.1301325 1.764401313 -0.053509 107 22 SH18839 18839 YNL302C_14_62942_61957_INTRON_21_571 intron/exon 24.926147 123.999187 24.926147 100.07304 62.4995935 1.795877193 -0.053517 147 88 SH20958 20958 YML025C spliced 29.093004 113.201942 71.147473 1.85215948 -0.053519 42 12 SH5348 5348 snR30 591-601+3' 591 28.426511 111.880394 70.1534525 1.846049049 -0.053536 169 97 SH370 370 Asn1 5' flank 547.366198 865.73676 706.551479 2.84914381 -0.053557 213 34 SH14462 14462 MT 21S rRNA 21S rRNA3 25.676736 128.577767 25.676736 103.901031 64.7888835 1.811500496 -0.053569 30 75 SH9568 9568 RUF3 RUF3 226 243 23.399875 88.770467 56.085171 1.748848048 -0.053572 203 68 SH9065 9065 snR14 / U4 RNA 5' 23.14044 86.800324 54.970382 1.740128755 -0.053631 204 51 SH7494 7494 snR71 86-90 + 3' 86 26.450325 107.681699 67.066012 1.826502482 -0.053635 190 50 SH14607 14607 MT 21S rRNA Sce1 endonuc 23.817253 114.769187 23.817253 91.951934 57.8845935 1.762562988 -0.053637 163 71 SH21587 21587 copy of SH6044 34.506929 121.255242 77.8810855 1.891431996 -0.053663 197 45 SH12359 12359 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.550043 133.450116 26.550043 107.900073 67.225058 1.827531186 -0.053683 139 57 SH18977 18977 YOR096W_15_505793_506766_INTRON_145_545 intron 26.674713 133.845962 26.674713 108.171249 67.422981 1.82880795 -0.05372 71 29 SH10585 10585 RUF8 RUF8 851 867 24.817357 99.53958 62.1784685 1.793640021 -0.05375 130 32 SH14136 14136 MT COB intronic 23.319058 110.490312 23.319058 88.171254 55.745156 1.746207135 -0.053774 43 67 SH5909 5909 snR36 snR36 1 17 33.536714 119.845087 76.6909005 1.884743837 -0.053777 71 65 SH3009 3009 Ser2 tRNA 6 18 928.425974 1380.623997 1154.524986 3.062403336 -0.053779 157 90 SH9689 9689 RUF4 RUF4 221 237 25.465309 102.842605 64.153957 1.807223449 -0.053838 213 65 SH15822 15822 YDL064W_4_337486_338069_INTRON_39_148 intron 26.09336 131.153302 26.09336 106.059942 66.076651 1.820048023 -0.053852 56 79 SH8110 8110 snoRNA cluster 3; 5' 24.38231 119.684071 24.38231 96.301761 60.3420355 1.780619956 -0.053889 142 52 SH3792 3792 RNaseP 5' flank 24.426192 96.643138 60.534665 1.782004143 -0.053903 107 28 SH15603 15603 YBR119W_2_479296_480281_INTRON_9_97 5' exon 26.006549 130.625893 26.006549 105.619344 65.8129465 1.818311335 -0.053915 94 37 SH15812 15812 YDL061C_4_341182_340627_INTRON_1_408 intron 26.100926 131.205241 26.100926 106.104315 66.1026205 1.820218677 -0.053918 69 48 SH14593 14593 MT 21S rRNA Sce1 endonuc 31.338223 146.938039 31.338223 116.599816 73.9690195 1.869049862 -0.053945 91 30 SH13510 13510 MT COX1 intronic 24.865644 123.666021 24.865644 99.800377 62.3330105 1.794718103 -0.053954 179 35 SH1836 1836 Leu9 5' flank 25.67613 103.93053 64.80333 1.811597323 -0.053968 189 80 SH11329 11329 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3531 3544 3401.375168 4365.71039 3883.542779 3.589228093 -0.053974 76 98 SH16103 16103 YDR059C_4_569765_569229_INTRON_48_137 3' exon 26.037481 130.823412 26.037481 105.785931 65.911706 1.818962553 -0.054008 4 49 SH19480 19480 ADH1 37.273874 125.433673 81.3537735 1.910377702 -0.054029 95 49 SH18331 18331 YML094W_13_82275_82849_INTRON_17_99 intron/exon 24.122697 117.441757 24.122697 94.31906 59.2208785 1.772474846 -0.054065 159 9 SH2188 2188 Met2 71-72 + 3' flank 71 22.871185 84.813709 53.842447 1.731124789 -0.054083 165 3 SH585 585 Gln1 5' flank 24.63301 98.273278 61.453144 1.788544107 -0.054098 15 67 SH6028 6028 snR37 snR37 56 73 24.754541 99.227749 61.991145 1.792329658 -0.054116 76 52 SH9716 9716 RUF4 RUF4 356 372 27.629995 110.237346 68.9336705 1.838431404 -0.054126 16 31 SH21891 21891 copy of SH18801 22.462972 81.803941 52.1334565 1.71711652 -0.054133 38 66 SH20029 20029 YBR181C spliced 32.09405 117.714437 74.9042435 1.874506422 -0.05415 125 34 SH17064 17064 YGR214W_7_920570_921783_INTRON_91_545 intron 28.728655 140.27689 28.728655 112.548235 70.638445 1.84904113 -0.05416 10 50 SH2313 2313 Phe2 3' flank 25.557175 103.341157 64.449166 1.809217302 -0.054201 20 25 SH19350 19350 YPL249C-A_16_76239_75699_INTRON_17_254 intron 26.225482 131.994657 26.225482 106.769175 66.4973285 1.822804198 -0.054211 47 15 SH7563 7563 snR79 3' 30.529369 115.417364 72.9733665 1.863164382 -0.054229 70 38 SH17540 17540 YJL177W_10_90783_91654_INTRON_310_626 intron 166.047336 482.254218 166.047336 317.206882 241.627109 2.383145658 -0.054234 196 83 SH12963 12963 MT COX1 COX1ai2 26.144364 131.498838 26.144364 106.354474 66.249419 1.821182074 -0.054241 44 13 SH19714 19714 Negative Control 65.159155 166.897579 116.028367 2.06456418 -0.054242 209 61 SH3096 3096 Ser3 3' flank 28.602597 112.290431 70.446514 1.847859507 -0.054244 117 13 SH13716 13716 MT tRNAGlu (and 5' processing site for COB) 3' 22.900044 106.945189 22.900044 85.045145 53.9725945 1.732173295 -0.054254 186 99 SH11932 11932 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6546 6561 42.690979 133.569661 88.13032 1.945125347 -0.054275 2 11 SH19634 19634 RNA14 2.2 22.50194 82.090359 52.2961495 1.718469713 -0.054292 184 80 SH19165 19165 YPL075W_16_412249_415357_INTRON_9_759 3' exon 21.974054 99.421554 21.974054 78.4475 50.210777 1.700796942 -0.054292 140 38 SH14230 14230 MT ATP9 3' 24.376694 119.67577 24.376694 96.299076 60.337885 1.780590083 -0.054302 195 58 SH18163 18163 YLR448W_12_1028848_1029762_INTRON_16_399 exon/intron 26.141221 131.485355 26.141221 106.344134 66.2426775 1.821137878 -0.054311 88 30 SH2660 2660 Pro4 5' flank 24.643205 98.375914 61.5095595 1.788942617 -0.054324 154 25 SH15664 15664 YBR189W_2_604466_605466_INTRON_8_420 intron 23.806797 114.745538 23.806797 91.938741 57.872769 1.762474262 -0.054336 209 69 SH6646 6646 snR48 snR48 56 73 33.507104 119.83442 76.670762 1.88462978 -0.054339 63 80 SH9120 9120 snR14 / U4 RNA 3' 25.721499 104.199128 64.9603135 1.812648112 -0.054414 93 59 SH15436 15436 YBL072C_2_89435_88518_INTRON_1_308 intron 25.715699 128.886024 25.715699 104.170325 64.943012 1.812532427 -0.054425 122 58 SH12301 12301 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 41.668687 172.741337 41.668687 132.07265 86.8706685 1.938873164 -0.054435 136 36 SH9210 9210 snR6 / U6 RNA 5' 25.891259 105.071356 65.4813075 1.816117343 -0.054442 160 27 SH17376 17376 YIL052C_9_257061_256224_INTRON_38_509 intron 24.90846 123.965187 24.90846 100.056727 62.4825935 1.795759048 -0.054452 132 51 SH6773 6773 snR50 snR50 41 58 31.501244 116.868946 74.185095 1.870316657 -0.054474 168 3 SH15027 15027 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.695549 105.234345 22.695549 83.538796 53.1171725 1.725234949 -0.05448 134 38 SH5157 5157 snR13 5' 23.531757 89.869557 56.700657 1.753588091 -0.05449 86 39 SH9828 9828 RUF5-1 5' 21.926158 78.136838 50.031498 1.699243506 -0.054492 204 94 SH13301 13301 MT COX1 COX1-ai5a 23.817941 114.857136 23.817941 92.039195 57.928568 1.762892793 -0.054506 131 102 SH13398 13398 MT COX1 intronic 23.758486 114.349316 23.758486 91.59083 57.674658 1.760985028 -0.054522 189 22 SH12049 12049 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7131 7148 25.818173 104.703173 65.260673 1.814651548 -0.054522 115 66 SH3269 3269 Thr2 5' flank 25.170996 101.397932 63.284464 1.801297106 -0.054533 43 32 SH5894 5894 snR36 5' 27.570802 110.135598 68.8532 1.837924129 -0.054535 118 71 SH17179 17179 YHR021C_8_148660_147862_INTRON_4_553 intron 104.203878 329.078517 104.203878 225.874639 165.0392585 2.217587264 -0.054537 182 36 SH11229 11229 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1/5.8S 3031 3054 23.872665 92.458081 58.165373 1.764664517 -0.054548 99 83 SH17469 17469 YIL148W_9_68708_69528_INTRON_9_442 3' exon 22.339748 102.322693 22.339748 80.982945 51.6613465 1.713165721 -0.054555 65 39 SH18575 18575 YNL044W_14_545264_545873_INTRON_25_103 5' exon 24.712207 122.653005 24.712207 98.940798 61.8265025 1.791174679 -0.054563 130 69 SH17063 17063 YGR214W_7_920570_921783_INTRON_91_545 intron 23.794168 114.659475 23.794168 91.865307 57.8297375 1.762151221 -0.054571 28 65 SH4499 4499 U3b (snR17b) U3b 51 68 26.980208 108.878616 67.929412 1.832057855 -0.054596 206 51 SH21124 21124 YNL112W spliced 26.3571 107.480077 66.9185885 1.825546772 -0.054604 101 53 SH21137 21137 YNL147W spliced 42.133091 132.771907 87.452499 1.941772224 -0.054611 105 87 SH19584 19584 AEP2/ATP13 0.6 25.137095 101.232421 63.184758 1.800612326 -0.054622 118 51 SH12284 12284 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.462314 136.373117 27.462314 109.910803 68.6865585 1.836871757 -0.054634 42 7 SH13949 13949 MT COB Cytbi3 27.037 135.040219 27.037 109.003219 68.0201095 1.832637327 -0.054644 163 80 SH15899 15899 YDL083C_4_307788_306925_INTRON_25_456 intron 24.727152 122.794097 24.727152 99.066945 61.8970485 1.791669941 -0.05465 201 32 SH1541 1541 Leu3 3' flank 26.581579 108.023849 67.302714 1.828032578 -0.054654 79 89 SH6201 6201 snR40 snR40 66 84 56.28155 153.73643 105.00899 2.021226481 -0.054655 74 38 SH3187 3187 Ser5 tRNA 56 70 274.583845 476.535237 375.559541 2.5746788 -0.054674 184 88 SH7421 7421 snR69 snR69 6 20 45.197127 137.352883 91.275005 1.960351865 -0.054693 134 57 SH12156 12156 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7666 7684 103.590604 224.974741 164.2826725 2.215591759 -0.054698 139 44 SH11361 11361 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3691 3708 44.255666 135.942455 90.0990605 1.954720262 -0.054698 68 63 SH20594 20594 YHR039C-A spliced 39.168559 128.318741 83.74365 1.922951886 -0.054705 76 36 SH5276 5276 snR30 snR30 231 247 31.608386 117.041486 74.324936 1.871134544 -0.054751 162 9 SH8505 8505 snR19 / U1 RNA U1 21 40 23.786947 91.828892 57.8079195 1.761987339 -0.054764 97 86 SH14727 14727 MT tRNA cys; tRNA his intergenic 26.153094 131.597643 26.153094 106.444549 66.2988215 1.821505809 -0.054782 35 71 SH19708 19708 Negative Control 25.559656 103.402132 64.480894 1.80943105 -0.054796 143 86 SH18498 18498 YMR194W_13_651144_651909_INTRON_17_479 intron 26.287739 132.42684 26.287739 107.139101 66.71342 1.824213205 -0.054799 173 74 SH12924 12924 MT COX1 COX1ai2 21.966847 99.405726 21.966847 78.438879 50.202863 1.700728485 -0.054804 133 91 SH17661 17661 YKL002W_11_437416_438182_INTRON_61_128 3' exon 26.312317 132.581618 26.312317 107.269301 66.790809 1.824716704 -0.054842 118 76 SH21564 21564 copy of SH5224 22.378414 81.277437 51.8279255 1.714563826 -0.054877 175 52 SH12910 12910 MT COX1 COX1ai2 22.671252 105.071731 22.671252 83.400479 53.0358655 1.724569661 -0.054963 110 9 SH5360 5360 snR30 3' 25.971662 105.527714 65.749688 1.817893696 -0.054971 123 46 SH17502 17502 YJL136C_10_156971_156248_INTRON_25_484 5' exon 38.618273 165.13659 38.618273 127.518317 83.068295 1.919435297 -0.054973 169 92 SH13145 13145 MT COX1 intronic 23.508569 112.245084 23.508569 89.736515 56.622542 1.752989363 -0.054976 105 14 SH3682 3682 Val2 3' flank 24.015722 93.588805 58.8022635 1.769394044 -0.05498 64 67 SH552 552 Cys1 61-72 + 3' flank 61 3' flank 39.742626 129.213233 84.4779295 1.926743261 -0.054982 54 94 SH9950 9950 RUF5-1 RUF5-1 556 573 25.025716 100.694637 62.8601765 1.798375596 -0.054987 89 83 SH2114 2114 Met1 5' flank 26.017163 105.762842 65.8900025 1.818819524 -0.054988 106 98 SH16901 16901 YGL226C-A_7_73156_72747_INTRON_22_170 intron/exon 24.495879 120.789538 24.495879 97.293659 60.894769 1.784579987 -0.054999 26 100 SH9614 9614 RUF3 3' 24.484747 97.208788 60.8467675 1.784237511 -0.055016 57 29 SH21667 21667 copy of SH9402 31.672984 117.152011 74.4124975 1.871645881 -0.055035 63 24 SH19139 19139 YPL075W_16_412249_415357_INTRON_9_759 intron 24.578572 121.522873 24.578572 97.944301 61.2614365 1.787187176 -0.055056 18 42 SH20102 20102 YDL061C spliced 27.661043 110.357936 69.0094895 1.838908815 -0.055061 144 52 SH14934 14934 MT tRNA Asn tRNA 59.413008 216.832503 59.413008 158.419495 108.9162515 2.037092686 -0.055078 91 88 SH21824 21824 copy of SH16119 24.25857 95.462645 59.8606075 1.77714112 -0.05508 60 48 SH1891 1891 Lys1 5' flank 81.983165 192.251662 137.1174135 2.137092612 -0.055096 72 75 SH18356 18356 YMR033W_13_337787_339276_INTRON_31_116 exon/intron 24.094644 117.298412 24.094644 94.203768 59.149206 1.771948919 -0.055096 133 103 SH5440 5440 snR31 3' 36.810321 124.793507 80.801914 1.907421648 -0.055096 78 87 SH11291 11291 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3341 3359 22.463549 81.888584 52.1760665 1.717471335 -0.055109 21 8 SH8889 8889 LSR1 / U2 RNA U2 1086 1098 25.697886 104.140279 64.9190825 1.812372373 -0.055174 124 30 SH20509 20509 YGR027C spliced 26.706462 108.323494 67.514978 1.82940013 -0.055179 151 20 SH21735 21735 copy of SH12340 26.430132 107.727307 67.0787195 1.826584764 -0.055198 25 51 SH10194 10194 RUF6 RUF6 816 834 24.862443 99.882922 62.3726825 1.794994422 -0.055215 191 67 SH1420 1420 Leu1 3' flank 26.287976 107.175473 66.7317245 1.824332348 -0.055217 45 89 SH14981 14981 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.973339 130.530152 25.973339 105.556813 65.765076 1.817995326 -0.055218 131 73 SH18127 18127 YLR388W_12_898158_898821_INTRON_1_488 intron 25.973723 130.534248 25.973723 105.560525 65.767124 1.818008851 -0.055239 136 12 SH4703 4703 snR4 snR4 51 72 24.365548 96.306079 60.3358135 1.780575173 -0.055247 140 101 SH16408 16408 YER056C-A_5_270183_269421_INTRON_38_434 intron 24.572494 121.489556 24.572494 97.917062 61.244778 1.787069065 -0.055258 28 86 SH14906 14906 MT tRNA Ile 3' 23.432598 111.61247 23.432598 89.179872 56.306235 1.750556489 -0.055274 79 24 SH8525 8525 snR19 / U1 RNA U1 121 137 211.533361 384.162975 297.848168 2.473994933 -0.05529 203 34 SH14898 14898 MT tRNA Ile tRNA 24.399307 119.971824 24.399307 96.572517 60.485912 1.781654233 -0.055294 113 41 SH7278 7278 snR65 3' 22.69652 83.617472 53.156996 1.72556043 -0.055297 134 93 SH9665 9665 RUF4 RUF4 101 113 35.497445 122.77717 79.1373075 1.89838127 -0.055317 88 28 SH15123 15123 MT tRNA Phe 5' 22.50209 103.682864 22.50209 82.180774 52.341432 1.7188456 -0.055331 145 101 SH3857 3857 RNaseP RNaseP 251 265 25.683005 104.079018 64.8810115 1.812117612 -0.055357 165 8 SH4895 4895 snR8 3' 24.669156 98.687559 61.6783575 1.7901328 -0.055396 110 47 SH17758 17758 YKL157W_11_154993_158183_INTRON_282_664 intron 23.464125 111.898038 23.464125 89.433913 56.449019 1.751656399 -0.055399 70 77 SH4884 4884 snR8 3' 22.345421 81.093413 51.719417 1.713653621 -0.055425 112 12 SH18478 18478 YMR143W_13_551927_552902_INTRON_25_568 intron 23.447376 111.755674 23.447376 89.308298 56.377837 1.75110841 -0.055433 157 26 SH17978 17978 YLR211C_12_564531_563792_INTRON_19_77 intron 22.86712 106.774373 22.86712 84.907253 53.8871865 1.731485509 -0.055479 10 67 SH19844 19844 Negative Control 24.385766 96.488051 60.4369085 1.781302241 -0.055502 198 52 SH16755 16755 YGL076C_7_365994_364333_INTRON_565_1032 3' exon 28.625341 140.039514 28.625341 112.414173 70.519757 1.848310807 -0.055522 26 28 SH20149 20149 YDL115C spliced 71.841198 177.046752 124.443975 2.094973875 -0.055535 22 58 SH2609 2609 Pro3 5' flank - tRNA8 8 164.533602 315.227487 239.8805445 2.379995026 -0.055544 47 54 SH4319 4319 telomerase RNA telomerase 631 645 24.910375 100.152723 62.531549 1.796099187 -0.055551 208 25 SH1500 1500 Leu3 5' flank 26.529034 107.963156 67.246095 1.82766707 -0.055577 145 99 SH5361 5361 snR30 3' 23.765529 91.745018 57.7552735 1.761591645 -0.055595 20 36 SH12641 12641 MT_15S MT_15S 22.986212 107.800665 22.986212 85.814453 54.4003325 1.735601554 -0.055615 109 95 SH5929 5929 snR36 snR36 101 117 24.463241 97.103195 60.783218 1.783783689 -0.055636 20 9 SH11375 11375 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3761 3778 6443.074892 7651.942039 7047.508466 3.848035606 -0.055639 103 104 SH14310 14310 MT VAR1 includes 5’ processing site VAR1 24.486588 120.772242 24.486588 97.285654 60.886121 1.784518306 -0.055643 200 63 SH12988 12988 MT COX1 COX1ai2 24.067229 117.113952 24.067229 94.046723 59.056976 1.771271205 -0.055645 83 86 SH20598 20598 YHR041C spliced 33.231164 119.50375 76.367457 1.882908329 -0.055656 133 10 SH14820 14820 "MT tRNAs (Lys, Arg1, Gly)" intergenic 23.912262 115.77901 23.912262 92.866748 58.389505 1.766334794 -0.05568 29 67 SH8915 8915 LSR1 / U2 RNA 3' 25.17912 101.531502 63.355311 1.801783027 -0.055691 61 4 SH530 530 Cys1 5' flank 23.178335 87.275549 55.226942 1.742150996 -0.055693 51 53 SH18590 18590 YNL050C_14_534978_534075_INTRON_18_108 3' exon 26.386797 133.048993 26.386797 107.662196 67.0244965 1.82623356 -0.055702 97 19 SH9954 9954 RUF5-1 RUF5-1 576 592 25.941754 105.437795 65.6897745 1.817497771 -0.05574 192 55 SH19507 19507 ACT1 25.839664 104.91383 65.376747 1.815423307 -0.055743 155 46 SH19263 19263 YPL143W_16_282121_282969_INTRON_20_544 intron 27.036954 135.10541 27.036954 109.068456 68.052705 1.832845392 -0.055773 167 61 SH9109 9109 snR14 / U4 RNA 3' 22.295254 80.774613 51.5349335 1.71210172 -0.055778 36 63 SH19688 19688 Negative Control 25.469208 103.020733 64.2449705 1.807839134 -0.055797 79 39 SH4064 4064 SRP RNA SRP RNA 211 229 33.640719 120.119948 76.8803335 1.885815259 -0.05585 76 48 SH5182 5182 snR13 snR13 66 82 43.5017 134.882312 89.192006 1.950325932 -0.055856 137 103 SH3157 3157 Ser5 5' flank 22.200425 80.125783 51.163104 1.708956885 -0.055858 103 41 SH8010 8010 snoRNA cluster 2 intergenic 23.972794 116.318306 23.972794 93.345512 58.659153 1.768335788 -0.055861 80 103 SH9699 9699 RUF4 RUF4 271 290 23.212644 87.552949 55.3827965 1.743374881 -0.055872 16 39 SH18264 18264 YML056C_13_164176_162194_INTRON_461_868 intron 23.099746 108.797776 23.099746 86.69803 54.898888 1.739563548 -0.0559 8 72 SH21928 21928 copy of SH20403 69.414052 173.402326 121.408189 2.084247981 -0.055954 110 12 SH355 355 Arg5 3' flank 27.716318 110.527451 69.1218845 1.83961557 -0.055954 7 101 SH8944 8944 snR17a / U3a U3a 6 23 22.803087 84.471613 53.63735 1.729467313 -0.055973 24 99 SH15111 15111 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF3 exon3 24.48231 120.770287 24.48231 97.287977 60.8851435 1.784511334 -0.056 3 72 SH20983 20983 YML056C spliced 39.291422 128.591883 83.9416525 1.923977515 -0.056019 138 70 SH3998 3998 RNase MRP 3' 25.642656 103.928799 64.7857275 1.81147934 -0.056049 173 3 SH16933 16933 YGR027C_7_534779_534126_INTRON_1_312 5' exon 27.571713 136.803307 27.571713 110.231594 68.9016535 1.838229644 -0.056143 195 89 SH14437 14437 MT 21S rRNA 21S rRNA3 86.858843 285.640569 86.858843 199.781726 143.3202845 2.156307662 -0.056144 45 7 SH18013 18013 YLR287C-A_12_713158_712537_INTRON_4_433 intron 22.940205 107.458547 22.940205 85.518342 54.2292735 1.734233786 -0.056177 54 91 SH21194 21194 YOL121C spliced 41.945487 132.602128 87.2738075 1.940883923 -0.056204 113 15 SH18433 18433 YMR142C_13_551206_550205_INTRON_5_406 intron 50.474996 194.774124 50.474996 145.299128 97.887062 1.990725294 -0.056205 111 53 SH13712 13712 MT tRNAGlu (and 5' processing site for COB) 3' 22.162374 101.053897 22.162374 79.891523 51.0269485 1.707799598 -0.056206 89 6 SH21461 21461 copy of SH731 38.026288 126.711037 82.3686625 1.915762014 -0.056221 105 51 SH15403 15403 YBL050W_2_125087_126081_INTRON_31_146 intron/exon 84.844368 280.591074 84.844368 196.746706 140.795537 2.148588889 -0.056237 150 50 SH18210 18210 YML025C_13_225365_224406_INTRON_28_126 5' exon 26.679507 134.009417 26.679507 108.32991 67.5047085 1.829334066 -0.056302 134 79 SH12491 12491 MT_tRNA Pro 5' 21.790571 98.15027 21.790571 77.359699 49.575135 1.695263906 -0.056335 142 44 SH10364 10364 RUF7 RUF7 431 450 24.250029 95.519737 59.884883 1.777317205 -0.056336 86 95 SH12814 12814 MT COX1 COX1ai1 23.753196 114.477365 23.753196 91.724169 57.7386825 1.76146687 -0.056365 214 43 SH4822 4822 snR5 3' 22.246256 80.48539 51.365823 1.710674251 -0.05639 6 7 SH13076 13076 MT COX1 COX1ai3 22.580422 104.431903 22.580422 82.851481 52.7159515 1.72194205 -0.056396 13 16 SH4256 4256 telomerase RNA telomerase 316 333 25.566746 103.56909 64.567918 1.810016783 -0.056406 150 100 SH18191 18191 YML024W_13_225889_226697_INTRON_4_401 intron 27.016555 135.078654 27.016555 109.062099 68.039327 1.832760009 -0.056419 183 87 SH15237 15237 MT COX3 3' 22.366703 102.690896 22.366703 81.324193 51.845448 1.714710632 -0.056438 169 84 SH617 617 Gln1 3' flank 47.926708 141.516402 94.721555 1.976448819 -0.056453 207 11 SH4514 4514 U3b (snR17b) U3b 126 143 25.727852 104.399499 65.0636755 1.813338593 -0.056465 21 97 SH10761 10761 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 691 704 28.26437 111.714655 69.9895125 1.845032969 -0.056472 138 16 SH19155 19155 YPL075W_16_412249_415357_INTRON_9_759 intron 24.648038 122.27926 24.648038 98.631222 61.63963 1.789860023 -0.056476 59 104 SH60 60 Ala2 5' flank 26.365399 107.660999 67.013199 1.82616035 -0.056494 132 8 SH519 519 Asp2 3' flank 23.605851 90.624172 57.1150115 1.756750269 -0.056494 180 10 SH13424 13424 MT COX1 intronic 26.701978 134.09209 26.701978 108.390112 67.546045 1.829599925 -0.056505 111 81 SH15711 15711 YBR220C_2_663261_662457_INTRON_302_722 intron 285.029846 776.584133 285.029846 492.554287 388.7920665 2.589717394 -0.056514 78 39 SH11286 11286 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3316 3333 43.569997 135.03323 89.3016135 1.950859306 -0.056532 212 6 SH9984 9984 RUF5-1 RUF5-1 726 747 23.678314 91.175109 57.4267115 1.759113947 -0.056546 131 66 SH16467 16467 YER093C-A_5_348396_347908_INTRON_125_199 3' exon 24.395764 120.072065 24.395764 96.676301 60.5360325 1.782013954 -0.056619 120 70 SH18133 18133 YLR406C_12_931752_931062_INTRON_58_406 exon/intron 27.508571 136.6345 27.508571 110.125929 68.81725 1.837697314 -0.056632 87 99 SH5436 5436 snR31 3' 24.497926 97.475992 60.986959 1.785236979 -0.056664 69 73 SH3831 3831 RNaseP RNaseP 121 135 25.831543 104.94868 65.3901115 1.815512078 -0.056673 102 30 SH16981 16981 YGR034W_7_555923_556666_INTRON_20_496 intron/exon 23.566178 112.907681 23.566178 90.341503 56.9538405 1.755523015 -0.056676 16 104 SH18300 18300 YML073C_13_124172_123227_INTRON_16_430 intron 25.975049 130.663383 25.975049 105.688334 65.8316915 1.818435014 -0.056699 61 100 SH9647 9647 RUF4 RUF4 11 23 24.236042 95.447597 59.8418195 1.77700479 -0.056702 206 84 SH4382 4382 telomerase RNA telomerase 946 963 26.591528 108.162835 67.3771815 1.82851284 -0.056702 134 13 SH1446 1446 Leu2 tRNA 1 13 541.257728 859.032882 700.145305 2.845188181 -0.056731 114 83 SH3718 3718 Val3 71-73 + 3' flank 71 22.968457 85.781061 54.374759 1.735397345 -0.056734 66 10 SH14052 14052 MT COB Cytbi4 22.007212 99.878274 22.007212 78.871062 50.439137 1.702767647 -0.056773 206 5 SH12971 12971 MT COX1 COX1ai2 23.936854 116.095282 23.936854 93.158428 58.547641 1.767509401 -0.056773 33 48 SH17155 17155 YHR012W_8_129473_130440_INTRON_49_167 intron/exon 24.313793 119.372173 24.313793 96.05838 60.1860865 1.779496105 -0.056799 46 102 SH12831 12831 MT COX1 COX1ai1 23.573766 112.987094 23.573766 90.413328 56.993547 1.755825686 -0.056822 123 71 SH13617 13617 MT ATP6 5' 22.381318 102.838899 22.381318 81.457581 51.9194495 1.715330079 -0.056825 140 74 SH1136 1136 His1 5' flank 28.437367 112.099035 70.268201 1.846758835 -0.056832 207 38 SH20628 20628 YHR123W spliced 26.643194 108.282138 67.462666 1.8290635 -0.056835 73 103 SH16318 16318 YDR471W_4_1401759_1402553_INTRON_32_415 intron 25.403772 127.175234 25.403772 102.771462 64.087617 1.806774123 -0.056853 187 77 SH11996 11996 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6866 6879 1118.049439 1633.461299 1375.755369 3.138541216 -0.05686 170 25 SH3447 3447 Trp1 tRNA 66 82 67.035124 169.939286 118.487205 2.073671455 -0.056869 4 74 SH18946 18946 YOL127W_15_80347_81189_INTRON_14_427 intron 29.441887 142.362719 29.441887 113.920832 71.6813595 1.855406234 -0.056872 181 74 SH5087 5087 snR11 snR11 36 53 21.813148 77.555607 49.6843775 1.696219853 -0.05688 32 64 SH19245 19245 YPL090C_16_378390_377286_INTRON_7_400 3' exon 29.435203 142.346437 29.435203 113.911234 71.6732185 1.855356907 -0.056883 127 101 SH18738 18738 YNL162W_14_331319_332151_INTRON_5_516 intron 25.264701 126.32863 25.264701 102.063929 63.664315 1.803896071 -0.056891 83 77 SH3274 3274 Thr2 5' flank 24.128923 94.641196 59.3850595 1.773677196 -0.056895 23 102 SH7368 7368 snR68 snR68 61 82 22.571964 82.833428 52.702696 1.721832832 -0.05691 33 14 SH18105 18105 YLR367W_12_855877_857316_INTRON_698_1180 intron 23.944731 116.177179 23.944731 93.232448 58.5885895 1.767813043 -0.056918 203 54 SH143 143 Arg1 3' flank 26.450244 107.869407 67.1598255 1.827109559 -0.056919 59 48 SH8365 8365 snoRNA cluster4 3' 29.178163 141.698322 29.178163 113.520159 71.349161 1.853388871 -0.056937 139 41 SH16324 16324 YDR471W_4_1401759_1402553_INTRON_32_415 intron 26.054677 131.173151 26.054677 106.118474 66.0865755 1.820113248 -0.056945 127 14 SH7432 7432 snR69 snR69 61 78 230.699723 412.639369 321.669546 2.507409946 -0.056964 50 72 SH9841 9841 RUF5-1 RUF5-1 11 32 22.990966 85.971723 54.4813445 1.736247817 -0.056967 191 94 SH9676 9676 RUF4 RUF4 156 173 28.024348 111.240491 69.6324195 1.842811486 -0.057 131 59 SH4403 4403 telomerase RNA telomerase 1051 1068 23.136677 87.078716 55.1076965 1.741212258 -0.057006 21 67 SH20122 20122 YDL079C spliced 36.924615 125.08874 81.0066775 1.90852082 -0.057009 185 84 SH12097 12097 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7371 7391 22.383903 81.491651 51.937777 1.715483357 -0.057021 18 14 SH421 421 Asp1 5' flank 27.789823 110.74601 69.2679165 1.840532125 -0.057023 73 60 SH10247 10247 RUF6 3' 24.915081 100.296377 62.605729 1.796614077 -0.057073 185 28 SH20969 20969 YML026C spliced 23.930284 93.137559 58.5339215 1.767407621 -0.057079 58 68 SH3462 3462 Trp1 3' flank 70.920677 175.806596 123.3636365 2.091187163 -0.05708 129 67 SH3403 3403 Thr4 3' flank 22.895446 85.262704 54.079075 1.733029255 -0.057084 125 14 SH14274 14274 MT VAR1 includes 5’ processing site VAR1 25.053428 125.055537 25.053428 101.002109 63.0277685 1.799531931 -0.05709 120 25 SH18816 18816 YNL302C_14_62942_61957_INTRON_21_571 intron 26.159475 131.831947 26.159475 106.672472 66.4159735 1.822272543 -0.057115 8 77 SH1391 1391 Leu1 tRNA-exon/intron 26 42 27.476277 110.085739 68.781008 1.837468536 -0.057121 13 7 SH12934 12934 MT COX1 COX1ai2 35.795572 158.149803 35.795572 123.354231 79.5749015 1.90077611 -0.057141 198 17 SH17394 17394 YIL069C_9_232366_231550_INTRON_4_412 intron 25.960511 130.611209 25.960511 105.650698 65.8056045 1.818262883 -0.057147 183 77 SH5239 5239 snR30 snR30 46 60 25.776508 104.705964 65.241236 1.81452218 -0.057157 81 83 SH5454 5454 snR32 5' 24.083039 94.316126 59.1995825 1.772318644 -0.057178 69 47 SH6084 6084 snR37 snR37 336 355 23.453187 89.517271 56.485229 1.751934894 -0.057189 84 72 SH16234 16234 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 25.301989 126.58019 25.301989 102.278201 63.790095 1.804753249 -0.057189 70 100 SH19706 19706 Negative Control 25.387626 102.719378 64.053502 1.806542879 -0.057231 176 64 SH20082 20082 YCR097W spliced 22.075625 79.378522 50.7270735 1.705239808 -0.05725 129 46 SH6959 6959 snR58 3' 23.033027 86.316739 54.674883 1.737787862 -0.057268 37 24 SH5108 5108 snR11 snR11 141 153 25.149257 101.508058 63.3286575 1.801600282 -0.057308 77 26 SH4524 4524 U3b (snR17b) U3b 176 192 25.828185 104.983785 65.405985 1.81561749 -0.057308 120 86 SH21309 21309 YPL241C spliced 39.968954 129.713188 84.841071 1.928606142 -0.057344 151 51 SH6661 6661 snR48 3' 62.059386 162.533272 112.296329 2.050365559 -0.0574 27 16 SH7551 7551 snR79 3' 23.950985 93.32758 58.6392825 1.768188648 -0.057413 105 26 SH303 303 Arg4 3' flank 23.124788 87.026348 55.075568 1.740958985 -0.057422 11 67 SH21745 21745 copy of SH12760 43.022563 134.270913 88.646738 1.947662759 -0.057444 7 20 SH17023 17023 YGR148C_7_788173_787307_INTRON_1_392 intron 23.684613 113.992066 23.684613 91.307453 57.496033 1.759637881 -0.057451 181 83 SH12308 12308 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.006696 156.20934 35.006696 122.202644 78.60467 1.895448349 -0.057457 15 87 SH20913 20913 YLR333C spliced 26.704652 108.451291 67.5779715 1.829805151 -0.057468 49 26 SH6119 6119 snR39B 5' 27.146527 109.402409 68.274468 1.834258325 -0.057482 5 10 SH17302 17302 YHR203C_8_505526_504472_INTRON_15_283 5' exon 41.323439 172.086888 41.323439 131.763449 86.543444 1.937234174 -0.057487 141 16 SH4618 4618 snR3 snR3 6 24 81.189277 191.331577 136.260427 2.134369746 -0.0575 108 80 SH5188 5188 snR13 snR13 96 115 21.954535 78.569241 50.261888 1.701238798 -0.057512 113 75 SH3514 3514 Tyr1 3' flank 23.076064 86.665209 54.8706365 1.739339998 -0.057517 4 5 SH15762 15762 YCR031C_3_178212_177492_INTRON_8_314 intron 24.636496 122.282941 24.636496 98.646445 61.6414705 1.789872991 -0.057521 108 40 SH13659 13659 MT ATP6 ATP6 25.649461 128.737751 25.649461 104.08829 64.8688755 1.81203637 -0.057576 66 3 SH20789 20789 YKL081W spliced 21.907453 78.253127 50.08029 1.699666835 -0.057583 4 43 SH2 2 Ala1 5' flank 30.77966 115.982946 73.381303 1.865585419 -0.057668 142 69 SH12607 12607 MT_15S MT_15S 31.416047 147.342506 31.416047 116.926459 74.171253 1.870235616 -0.057704 41 32 SH19171 19171 YPL079W_16_406631_407534_INTRON_12_432 intron 23.33079 110.956694 23.33079 88.625904 55.978347 1.74802007 -0.057719 129 34 SH10493 10493 RUF8 RUF8 391 408 29.026225 113.3302 71.1782125 1.852347077 -0.057739 13 59 SH12307 12307 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.539306 121.448092 24.539306 97.908786 61.224046 1.786922027 -0.057758 75 95 SH21109 21109 YNL069C spliced 24.434207 97.090179 60.762193 1.78363344 -0.057774 109 55 SH4804 4804 snR5 191-204 + 3' 191 23.401975 89.181835 56.291905 1.750445946 -0.057818 31 22 SH639 639 Gln2 5' flank 27.765089 110.740795 69.252942 1.840438228 -0.057826 46 35 SH7622 7622 snR189 181-189 + 3' 181 29.282426 113.730819 71.5066225 1.854346265 -0.057857 86 77 SH7335 7335 snR66 3' 24.28121 95.913706 60.097458 1.778856103 -0.057892 207 68 SH1346 1346 Ile3 tRNA 111 123 27.395673 109.958993 68.677333 1.836813422 -0.057893 153 7 SH2864 2864 Pro7 3' flank 31.427538 116.954219 74.1908785 1.870350514 -0.057897 202 79 SH10662 10662 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 196 214 143.05766 283.991259 213.5244595 2.329447631 -0.057913 205 61 SH12817 12817 MT COX1 COX1ai1 26.41615 133.269098 26.41615 107.852948 67.134549 1.826946076 -0.057924 130 29 SH12678 12678 MT tRNA Trp 5' / tRNA 23.43604 111.890076 23.43604 89.454036 56.445038 1.75162577 -0.057925 206 96 SH5599 5599 snR34 5' 27.978126 111.198862 69.588494 1.842537438 -0.057948 124 78 SH12734 12734 MT COX1 Exon1 26.658323 134.038116 26.658323 108.379793 67.519058 1.829426375 -0.057965 91 63 SH13295 13295 MT COX1 COX1-ai5a 23.780914 114.866383 23.780914 92.085469 57.9331915 1.762927454 -0.057969 33 4 SH10122 10122 RUF6 RUF6 456 472 24.582335 98.270521 61.426428 1.788355261 -0.058005 105 86 SH16442 16442 YER074W_5_306319_307192_INTRON_4_469 intron 41.586594 172.777837 41.586594 132.191243 86.8889185 1.938964392 -0.058014 119 81 SH21926 21926 copy of SH20401 26.062846 106.250472 66.156659 1.820573565 -0.058024 166 20 SH18144 18144 YLR406C_12_931752_931062_INTRON_58_406 intron 23.628843 113.573544 23.628843 90.944701 57.286772 1.758054351 -0.058076 87 46 SH3355 3355 Thr3 3' flank 49.424088 143.884508 96.654298 1.985221171 -0.05808 137 12 SH19630 19630 RNA14 2.2 22.371678 81.494187 51.9329325 1.715442847 -0.058087 29 72 SH16874 16874 YGL187C_7_150529_149708_INTRON_1_342 intron 25.426809 127.41582 25.426809 102.989011 64.20791 1.807588534 -0.058088 73 102 SH18924 18924 YOL121C_15_92849_92025_INTRON_21_410 intron 25.535862 128.083646 25.535862 103.547784 64.541823 1.809841228 -0.05809 20 87 SH3702 3702 Val3 5' flank - tRNA8 8 24.316913 96.210004 60.2634585 1.780054052 -0.058092 58 22 SH5750 5750 snR35 5' 24.119784 94.687148 59.403466 1.773811785 -0.058092 11 33 SH3920 3920 RNase MRP RNaseMRP 16 33 78.704057 187.667872 133.1859645 2.12445846 -0.058096 190 41 SH7766 7766 snoRNA cluster1 snR76 26.251547 132.483405 26.251547 107.231858 66.7417025 1.824397281 -0.058122 208 33 SH3997 3997 RNase MRP 3' 26.11916 106.553292 66.336226 1.82175076 -0.058175 148 36 SH16431 16431 YER074W_5_306319_307192_INTRON_4_469 intron 40.520959 170.1263 40.520959 130.605341 85.56315 1.932286765 -0.058189 193 33 SH20190 20190 YDL219W spliced 24.320805 96.251527 60.286166 1.780217665 -0.058206 168 7 SH19431 19431 YPR132W_16_794960_795762_INTRON_66_430 intron 24.661509 122.576526 24.661509 98.915017 61.788263 1.790905986 -0.058233 88 59 SH10607 10607 RUF8 3' 22.315001 81.112424 51.7137125 1.713605717 -0.058238 200 52 SH10017 10017 RUF6 5' 361.976405 605.852057 483.914231 2.684768394 -0.058241 170 98 SH15517 15517 YBR048W_2_332790_333771_INTRON_46_556 intron 52.763403 200.590767 52.763403 148.827364 100.7953835 2.003440642 -0.058251 60 64 SH5038 5038 snR10 snR10 221 237 25.209316 101.890074 63.549695 1.803113471 -0.058254 77 31 SH18982 18982 YOR096W_15_505793_506766_INTRON_145_545 intron 25.805986 129.754363 25.805986 104.948377 65.3771815 1.815426194 -0.058263 88 65 SH13005 13005 MT COX1 COX1ai2 23.728432 114.445912 23.728432 91.71748 57.722956 1.761348563 -0.058287 102 48 SH16876 16876 YGL187C_7_150529_149708_INTRON_1_342 intron/exon 27.41858 136.451874 27.41858 110.033294 68.725937 1.83712067 -0.058329 137 95 SH9404 9404 RUF1 3' 27.131715 109.420837 68.276276 1.834269825 -0.058346 85 65 SH13979 13979 MT COB intronic 23.660033 113.867699 23.660033 91.207666 57.4338495 1.759167926 -0.058369 107 38 SH20805 20805 YKL180W spliced 25.539809 103.59147 64.5656395 1.810001457 -0.058379 54 63 SH9251 9251 snR6 / U6 RNA 3' 26.119388 106.573083 66.3462355 1.821816286 -0.058398 163 43 SH12772 12772 MT COX1 COX1ai1 24.379859 120.109103 24.379859 96.729244 60.5545515 1.782146792 -0.058399 80 56 SH20786 20786 YKL081W spliced 24.074098 94.366603 59.2203505 1.772470973 -0.058409 75 15 SH10465 10465 RUF8 RUF8 251 270 23.501583 90.006662 56.7541225 1.753997413 -0.058423 52 50 SH3937 3937 RNase MRP RNaseMRP 101 115 34.537156 121.582005 78.0595805 1.892426213 -0.058424 188 29 SH7509 7509 snR71 3' 26.468527 107.995954 67.2322405 1.827577584 -0.058436 82 78 SH10040 10040 RUF6 RUF6 46 62 155.905534 303.036884 229.471209 2.360728204 -0.058474 2 58 SH13198 13198 MT COX1 Exon4 23.185174 109.771354 23.185174 87.58618 55.385677 1.743397469 -0.05852 88 66 SH16433 16433 YER074W_5_306319_307192_INTRON_4_469 intron 53.345498 202.067771 53.345498 149.722273 101.5338855 2.006611006 -0.058542 33 38 SH14290 14290 MT VAR1 includes 5’ processing site VAR1 24.70391 122.985598 24.70391 99.281688 61.992799 1.792341245 -0.058557 57 38 SH9052 9052 snR17a / U3a 3' 37.148765 125.52937 81.3390675 1.910299189 -0.058563 133 9 SH20410 20410 YFR032C-A spliced 54.905586 152.043067 103.4743265 2.014832608 -0.058611 155 65 SH15794 15794 YDL061C_4_341182_340627_INTRON_1_408 5' exon 24.712205 123.066139 24.712205 99.353934 62.0330695 1.792623271 -0.058625 209 37 SH10817 10817 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 971 987 2869.927818 3773.071748 3321.499783 3.521334228 -0.058638 116 19 SH9152 9152 snR7 U5 RNA U5 31 47 41.797657 132.549031 87.173344 1.940383706 -0.058666 59 64 SH9834 9834 RUF5-1 5' 24.275915 95.94905 60.1124825 1.778964664 -0.058668 213 49 SH13799 13799 MT COB intronic 24.195736 118.524882 24.195736 95.329146 59.762441 1.776428328 -0.058671 12 10 SH10514 10514 RUF8 RUF8 496 519 23.157166 87.391411 55.2742885 1.742523161 -0.058724 105 95 SH2889 2889 Pro8 5' flank 22.956977 85.873484 54.4152305 1.735720473 -0.058728 212 2 SH3803 3803 RNaseP 5' flank 36.715955 124.878954 80.7974545 1.907397679 -0.058761 131 57 SH3281 3281 Thr2 tRNA 6 22 86.78825 199.975792 143.382021 2.156494698 -0.058765 78 95 SH13641 13641 MT ATP6 ATP6 22.289897 102.274301 22.289897 80.984404 51.6371505 1.712962269 -0.058804 184 60 SH12124 12124 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7506 7524 28.341372 112.014944 70.178158 1.846201965 -0.058804 76 53 SH18517 18517 YMR201C_13_667043_665844_INTRON_28_111 3' exon 37.594559 162.820191 37.594559 126.225632 81.9100955 1.913337432 -0.058846 36 11 SH13317 13317 MT COX1 COX1-ai5a 22.219838 101.722078 22.219838 80.50224 51.361039 1.710633801 -0.058849 165 41 SH6680 6680 snR49 5' 22.370933 81.553309 51.962121 1.71568687 -0.058869 37 5 SH5202 5202 snR13 3' 24.669903 99.046439 61.858171 1.791397075 -0.058877 63 51 SH10828 10828 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1026 1044 1336.689641 1919.960429 1628.325035 3.2117411 -0.05889 17 7 SH13259 13259 MT COX1 COX1-ai4 23.481423 112.378634 23.481423 89.897211 56.689317 1.753501225 -0.058916 64 11 SH5777 5777 snR35 snR35 71 95 22.435719 82.010535 52.223127 1.717862873 -0.058932 99 87 SH21335 21335 YPR063C spliced 22.05564 79.37615 50.715895 1.705144094 -0.058936 62 74 SH19071 19071 YOR293W_15_867094_867848_INTRON_53_489 intron 30.443417 144.995504 30.443417 115.552087 72.997752 1.863309486 -0.058946 73 58 SH15895 15895 YDL082W_4_308423_309387_INTRON_5_369 3' exon 25.15217 125.806255 25.15217 101.654085 63.4031275 1.802110681 -0.058954 115 68 SH14464 14464 MT 21S rRNA 21S rRNA3 23.0864 108.961297 23.0864 86.874897 54.9806485 1.740209858 -0.058963 29 71 SH16883 16883 YGL189C_7_148970_148233_INTRON_1_368 intron 25.403962 127.346795 25.403962 102.942833 64.1733975 1.807355033 -0.058965 173 17 SH9334 9334 RUF1 RUF1 246 263 22.078059 79.532826 50.8054425 1.705910238 -0.058966 3 91 SH15569 15569 YBR084C-A_2_415219_414144_INTRON_3_508 intron 24.646408 122.51943 24.646408 98.873022 61.759715 1.790705283 -0.058989 50 100 SH10071 10071 RUF6 RUF6 201 218 24.68228 99.155564 61.918922 1.791823387 -0.058992 37 97 SH5467 5467 snR32 5' - 13 -4 13 25.975912 105.884008 65.92996 1.819082812 -0.059003 91 33 SH216 216 Arg3 5' flank 26.781914 108.706843 67.7443785 1.830873263 -0.059009 172 96 SH19598 19598 AEP2/ATP13 2.1 23.475527 89.861762 56.6686445 1.753342825 -0.059023 158 6 SH17988 17988 YLR275W_12_694378_694800_INTRON_6_95 intron 22.82442 106.727039 22.82442 84.902619 53.8635195 1.731294727 -0.059034 49 66 SH16633 16633 YFR024C-A_6_203420_201947_INTRON_48_165 5' exon 27.519041 136.808611 27.519041 110.28957 68.9043055 1.83824636 -0.059049 2 39 SH21639 21639 copy of SH8349 23.95985 93.552545 58.7561975 1.769053682 -0.059053 133 6 SH2656 2656 Pro4 5' flank 23.493233 90.003483 56.748358 1.7539533 -0.059075 7 86 SH18840 18840 YNL302C_14_62942_61957_INTRON_21_571 3' exon 25.047227 125.177565 25.047227 101.130338 63.0887825 1.799952146 -0.059106 162 100 SH12146 12146 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7616 7634 35.766092 123.431048 79.59857 1.900905266 -0.059118 179 43 SH15061 15061 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.336121 126.944694 25.336121 102.608573 63.972347 1.805992284 -0.059127 168 70 SH20328 20328 YER074W spliced 26.124716 106.66347 66.394093 1.822129442 -0.05915 30 50 SH20882 20882 YLR211C spliced 26.710016 108.562368 67.636192 1.830179148 -0.059195 147 72 SH5831 5831 snR35 snR35 341 355 1501.987097 2131.629997 1816.808547 3.259309164 -0.05923 35 7 SH210 210 Arg3 5' flank 24.461327 97.44802 60.9546735 1.785007009 -0.059241 144 13 SH2482 2482 Pro1 5' flank 22.687575 83.898149 53.292862 1.726669044 -0.059261 122 53 SH10771 10771 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 741 758 305.373099 523.454609 414.413854 2.617434266 -0.059279 18 34 SH12062 12062 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7196 7213 24.717906 99.468221 62.0930635 1.793043087 -0.059305 86 75 SH9838 9838 RUF5-1 5' - 16 -4 16 20.613996 69.887301 45.2506485 1.655624808 -0.059313 79 52 SH19746 19746 Negative Control 25.713424 104.560526 65.136975 1.813827586 -0.059333 46 34 SH10641 10641 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 91 109 182.184262 342.036306 262.110284 2.418484061 -0.059354 176 97 SH17654 17654 YJR145C_10_702761_701720_INTRON_15_270 3' exon 26.181339 132.154595 26.181339 106.973256 66.5772975 1.823326162 -0.059358 208 93 SH14536 14536 MT 21S rRNA 21S rRNA3 24.343298 119.883569 24.343298 96.540271 60.4417845 1.781337278 -0.05936 122 85 SH16651 16651 YFR031C-A_6_221405_220494_INTRON_5_151 intron 25.541988 128.225012 25.541988 103.683024 64.612506 1.810316586 -0.059368 102 38 SH9436 9436 RUF2 RUF2 21 40 23.709839 91.681913 57.695876 1.761144772 -0.059407 109 54 SH933 933 Gly1 5' flank 21.471843 75.446479 48.459161 1.685375891 -0.059425 65 75 SH4353 4353 telomerase RNA telomerase 801 820 25.552094 103.740886 64.64649 1.81054495 -0.059441 118 34 SH19556 19556 CBP1 2.2 22.444758 82.116124 52.280441 1.718339242 -0.059444 136 17 SH14183 14183 MT COB Exon6 22.43617 103.494135 22.43617 82.057965 52.2470675 1.71806192 -0.059467 149 94 SH18170 18170 YLR448W_12_1028848_1029762_INTRON_16_399 intron 75.415961 257.226835 75.415961 182.810874 129.1134175 2.110971377 -0.059478 134 16 SH15974 15974 YDL136W_4_217600_218367_INTRON_4_408 intron 26.312654 132.974836 26.312654 107.662182 66.987418 1.825993238 -0.059481 20 42 SH16229 16229 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 25.6252 128.744792 25.6252 104.119592 64.872396 1.812059938 -0.059483 187 99 SH13236 13236 MT COX1 COX1-ai4 24.125188 117.990189 24.125188 94.865001 59.4950945 1.774481159 -0.059493 111 37 SH2420 2420 Phe4 3' flank 28.738106 112.887456 70.812781 1.850111651 -0.0595 56 18 SH12908 12908 MT COX1 COX1ai2 24.777546 123.566013 24.777546 99.788467 62.2830065 1.794369568 -0.059519 208 14 SH13201 13201 MT COX1 Exon4 149.425562 442.087198 149.425562 293.661636 221.543599 2.345459207 -0.059523 17 36 SH4408 4408 telomerase RNA telomerase 1076 1092 22.841096 85.072865 53.9569805 1.732047638 -0.059539 102 21 SH11165 11165 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2711 2732 21.390645 74.91216 48.1514025 1.682608941 -0.059558 115 49 SH17908 17908 YLR061W_12_263195_263949_INTRON_13_401 intron 26.040162 131.302437 26.040162 106.262275 66.1512185 1.820537848 -0.059569 91 52 SH671 671 Gln2 3' flank 28.001199 111.344146 69.6726725 1.843062469 -0.059582 76 100 SH9069 9069 snR14 / U4 RNA 5' 23.971268 93.691743 58.8315055 1.769609962 -0.059592 44 45 SH12693 12693 MT ORF 8 (hypothetical) 5' 22.627675 105.108862 22.627675 83.481187 53.054431 1.724721661 -0.0596 96 39 SH9542 9542 RUF3 RUF3 96 112 23.848407 92.75763 58.3030185 1.76569104 -0.059643 53 21 SH783 783 Glu1 5' flank 24.860519 100.221336 62.5409275 1.796164318 -0.059651 197 84 SH7729 7729 snoRNA cluster1 intergenic 24.258125 119.175843 24.258125 95.917718 60.0879215 1.778787182 -0.059751 193 31 SH3051 3051 Ser3 5' flank 26.561858 108.274104 67.417981 1.828775742 -0.059757 107 35 SH19281 19281 YPL143W_16_282121_282969_INTRON_20_544 intron 27.240134 135.976294 27.240134 109.73616 68.488147 1.835615416 -0.059773 5 79 SH4356 4356 telomerase RNA telomerase 816 835 23.368851 89.110588 56.2397195 1.750043146 -0.059787 70 51 SH19329 19329 YPL218W_16_138697_139408_INTRON_29_167 intron 21.478087 95.994076 21.478087 75.515989 48.497038 1.685715214 -0.059787 47 70 SH5121 5121 snR11 snR11 206 220 27.844674 111.025419 69.4350465 1.841578731 -0.059795 77 55 SH2129 2129 Met1 tRNA 31 48 35.755424 123.457094 79.606259 1.900947215 -0.059805 212 67 SH6443 6443 snR45 snR45 61 73 25.626167 104.15091 64.8885385 1.812167993 -0.059806 158 89 SH18239 18239 YML026C_13_223828_222987_INTRON_48_448 intron 29.620468 142.976892 29.620468 114.356424 71.988446 1.857262799 -0.059824 128 2 SH1257 1257 Ile2 5' flank 23.112855 87.154879 55.133867 1.741418454 -0.059829 174 101 SH12789 12789 MT COX1 COX1ai1 23.99108 116.858217 23.99108 93.867137 58.9291085 1.770329871 -0.059836 189 92 SH17022 17022 YGR148C_7_788173_787307_INTRON_1_392 intron 32.666483 150.57329 32.666483 118.906807 75.786645 1.879592682 -0.059856 210 49 SH2622 2622 Pro3 tRNA-intron/exon 61 75 37.474925 126.109992 81.7924585 1.912713262 -0.059886 61 16 SH15604 15604 YBR119W_2_479296_480281_INTRON_9_97 exon/intron 24.379017 120.251823 24.379017 96.872806 60.6259115 1.782658281 -0.05991 25 100 SH17782 17782 YKL180W_11_109271_110131_INTRON_310_615 intron 24.508074 121.392611 24.508074 97.884537 61.1963055 1.786725204 -0.05995 14 104 SH21630 21630 copy of SH7930 27.595709 110.506497 69.051103 1.83917062 -0.059964 58 47 SH13350 13350 MT COX1 intronic 23.445868 112.169733 23.445868 89.723865 56.5848665 1.752700296 -0.059995 44 63 SH14120 14120 MT COB intronic 25.220105 126.306654 25.220105 102.086549 63.653327 1.803821108 -0.06002 166 95 SH10969 10969 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1731 1748 1992.302082 2740.168675 2366.235379 3.374057943 -0.060023 47 61 SH6909 6909 snR58 5' 26.803622 108.812325 67.8079735 1.831280765 -0.060024 48 68 SH14103 14103 MT COB Cytbi4 21.700508 97.740009 21.700508 77.039501 49.3700045 1.693463167 -0.060069 41 78 SH9991 9991 RUF5-1 761-775 + 3' 761 26.835462 108.884039 67.8597505 1.831612259 -0.060077 152 88 SH8955 8955 snR17a / U3a U3a 61 80 25.673647 104.41787 65.0457585 1.813218982 -0.060087 79 33 SH2323 2323 Phe3 5' flank 23.846823 92.789852 58.3183375 1.765805135 -0.060108 118 98 SH4686 4686 snR4 5' 21.949822 78.743268 50.346545 1.701969673 -0.060112 207 3 SH570 570 Cys1 3' flank 30.411156 115.570376 72.990766 1.863267921 -0.060139 176 18 SH13418 13418 MT COX1 intronic 22.440563 103.586276 22.440563 82.145713 52.293138 1.718444704 -0.060156 176 12 SH6347 6347 snR43 5' 27.025953 109.302549 68.164251 1.833556667 -0.06022 80 57 SH20098 20098 YDL029W spliced 26.155351 106.911427 66.533389 1.823039646 -0.060221 173 84 SH21240 21240 YOR312C spliced 52.599722 148.737792 100.668757 2.002894706 -0.060232 107 53 SH6024 6024 snR37 snR37 36 57 23.72507 91.877526 57.801298 1.761937591 -0.060257 80 67 SH4351 4351 telomerase RNA telomerase 791 813 26.574546 108.331091 67.4528185 1.829000101 -0.06027 98 5 SH18931 18931 YOL121C_15_92849_92025_INTRON_21_410 intron 1940.134189 4616.323998 1940.134189 2677.189809 2308.661999 3.363360354 -0.060283 112 86 SH20670 20670 YIL069C spliced 23.989429 93.898505 58.943967 1.770439361 -0.060294 210 79 SH5960 5960 snR36 snR36 256 275 23.035713 86.612849 54.824281 1.738972945 -0.060317 3 30 SH12707 12707 MT ORF 8 (hypothetical) ORF8 23.686784 114.280154 23.686784 91.59337 57.640077 1.760724552 -0.060324 13 49 SH7743 7743 snoRNA cluster1 intergenic 23.161987 109.736735 23.161987 87.574748 55.3683675 1.743261719 -0.060326 77 8 SH7423 7423 snR69 snR69 16 32 25.14687 101.737696 63.442283 1.802378803 -0.060341 213 7 SH21167 21167 YNL302C spliced 27.995143 111.377546 69.6863445 1.843147684 -0.060364 55 73 SH1889 1889 Lys1 5' flank 254.437477 448.475716 351.4565965 2.545871699 -0.060374 190 45 SH4110 4110 SRP RNA SRP RNA 441 453 30.605956 115.876213 73.2410845 1.864754766 -0.060388 121 25 SH5621 5621 snR34 snR34 26 42 26.187303 107.091741 66.639522 1.823731873 -0.060402 214 54 SH7871 7871 snoRNA cluster1 snR73 68.06625 238.867106 68.06625 171.800856 119.933553 2.0789407 -0.060432 131 24 SH4732 4732 snR4 3' 23.72672 91.908113 57.8174165 1.762058682 -0.060449 57 10 SH2692 2692 Pro4 3' flank 31.865045 117.740694 74.8028695 1.873918258 -0.060462 8 60 SH13193 13193 MT COX1 Exon4 22.44397 103.639128 22.44397 82.195158 52.319564 1.718664116 -0.060464 92 62 SH3263 3263 Thr2 5' flank 21.732848 77.290498 49.511673 1.694707601 -0.060472 188 19 SH2989 2989 Ser2 5' flank 23.543808 90.529811 57.0368095 1.756155224 -0.060507 30 28 SH15394 15394 YBL040C_2_142830_142074_INTRON_23_119 3' exon 24.613894 122.385294 24.613894 98.7714 61.692647 1.790233405 -0.060509 179 21 SH3031 3031 Ser2 3' flank 24.903481 100.509044 62.7062625 1.797310916 -0.060523 199 89 SH10502 10502 RUF8 RUF8 436 452 26.269373 107.526372 66.8978725 1.825412306 -0.060524 116 78 SH8084 8084 snoRNA cluster 2 3' 22.663772 105.49518 22.663772 83.831408 53.24759 1.726299956 -0.060526 45 24 SH941 941 Gly1 5' flank 23.22624 88.084676 55.655458 1.745507761 -0.06053 26 71 SH6062 6062 snR37 snR37 226 245 22.982179 86.227372 54.6047755 1.737230626 -0.060542 92 47 SH10663 10663 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 201 218 33.919348 120.806499 77.3629235 1.888532873 -0.060549 112 91 SH10491 10491 RUF8 RUF8 381 399 24.465331 97.612098 61.0387145 1.785605379 -0.060568 167 72 SH7115 7115 snR63 snR63 81 102 22.16717 80.277596 51.222383 1.709459779 -0.060574 149 38 SH5466 5466 snR32 5' - 8 -9 8 27.496507 110.332224 68.9143655 1.838309762 -0.060597 51 57 SH1887 1887 Leu9 3' flank 34.121172 121.105146 77.613159 1.88993536 -0.060599 2 29 SH21077 21077 YMR230W spliced 82.960302 194.364133 138.6622175 2.141958141 -0.060627 41 47 SH12557 12557 MT_15S MT_15S 46.938395 186.292717 46.938395 140.354322 93.6463585 1.971490894 -0.060649 177 20 SH2563 2563 Pro2 tRNA-intron 51 67 112.911562 239.785671 176.3486165 2.246372057 -0.060687 88 62 SH16627 16627 YFL039C_6_54695_53260_INTRON_11_318 intron 22.127042 101.136739 22.127042 80.009697 51.0683695 1.708151992 -0.060693 174 40 SH20437 20437 YGL076C spliced 399.506811 660.994714 530.2507625 2.724481302 -0.060716 119 50 SH712 712 Gln3 3' flank 21.825923 77.944992 49.8854575 1.697973959 -0.060735 154 59 SH8275 8275 snoRNA cluster4 snR67 31.262632 147.136347 31.262632 116.873715 74.0681735 1.869631635 -0.060771 167 53 SH2019 2019 Lys3 tRNA-intron 41 57 24.431562 97.370474 60.901018 1.784624552 -0.060791 48 47 SH11100 11100 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2386 2399 2282.398693 3090.153002 2686.275848 3.429150607 -0.060793 16 77 SH173 173 Arg2 5' flank 24.69787 99.464471 62.0811705 1.792959897 -0.060817 151 99 SH7215 7215 snR64 3' 25.085626 101.46528 63.275453 1.801235263 -0.060852 142 34 SH7038 7038 snR62 5' 27.307246 109.94323 68.625238 1.836483864 -0.060861 78 28 SH16402 16402 YER056C-A_5_270183_269421_INTRON_38_434 intron 29.886924 143.706571 29.886924 114.819647 72.3532855 1.859458257 -0.060868 149 43 SH15429 15429 YBL072C_2_89435_88518_INTRON_1_308 intron 57.495168 212.520981 57.495168 156.025813 106.7604905 2.02841056 -0.060875 214 95 SH10810 10810 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 936 953 30.742572 116.109081 73.4258265 1.865848844 -0.060902 196 102 SH4458 4458 telomerase RNA 3' 23.084563 87.045162 55.0648625 1.740874559 -0.060988 189 103 SH13298 13298 MT COX1 COX1-ai5a 23.623651 113.801298 23.623651 91.177647 57.400649 1.758916803 -0.060989 82 59 SH15838 15838 YDL075W_4_322225_322987_INTRON_58_478 intron 28.437836 139.787284 28.437836 112.349448 70.393642 1.847533435 -0.061019 109 70 SH5000 5000 snR10 snR10 31 47 24.083584 94.69271 59.388147 1.773699775 -0.061019 108 6 SH2203 2203 Met2 3' flank 22.359552 81.651168 52.00536 1.716048107 -0.061021 177 70 SH5942 5942 snR36 snR36 166 182 24.009519 94.12583 59.0676745 1.771349873 -0.061051 46 41 SH15929 15929 YDL108W_4_267697_268698_INTRON_29_109 intron/exon 26.998254 135.290077 26.998254 109.291823 68.1450385 1.833434241 -0.061062 73 89 SH9747 9747 RUF4 RUF4 511 527 26.588098 108.406999 67.4975485 1.829288 -0.061079 177 72 SH69 69 Ala2 5' flank 25.940416 105.874055 65.9072355 1.818933095 -0.061086 38 31 SH10744 10744 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 606 623 31.798747 117.682126 74.7404365 1.87355563 -0.061135 15 50 SH17008 17008 YGR148C_7_788173_787307_INTRON_1_392 intron 65.223211 231.85517 65.223211 167.631959 116.427585 2.066055889 -0.061186 126 82 SH18614 18614 YNL069C_14_494998_493953_INTRON_29_477 intron 25.902542 130.590985 25.902542 105.688443 65.7954925 1.818196142 -0.061203 37 14 SH16355 16355 YDR500C_4_1450856_1450201_INTRON_8_396 intron 24.15946 118.45615 24.15946 95.29669 59.728075 1.776178518 -0.061206 125 98 SH14081 14081 MT COB Cytbi4 23.09949 109.279103 23.09949 87.179613 55.1395515 1.741463229 -0.061216 126 36 SH18432 18432 YMR142C_13_551206_550205_INTRON_5_406 intron 26.81107 134.71058 26.81107 108.89951 67.85529 1.831583711 -0.061255 16 72 SH9232 9232 snR6 / U6 RNA U6 31 50 189.007507 352.494113 270.75081 2.432569765 -0.061258 198 85 SH12584 12584 MT_15S MT_15S 22.331192 102.805098 22.331192 81.473906 51.902549 1.715188687 -0.061271 43 8 SH5473 5473 snR32 snR32 26 43 24.848673 100.28895 62.5688115 1.796357906 -0.061278 146 26 SH9763 9763 RUF4 RUF4 591 613 25.440613 103.31871 64.3796615 1.808748689 -0.061288 53 10 SH12219 12219 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 63.288047 226.999841 63.288047 164.711794 113.9999205 2.056904548 -0.061295 13 9 SH21177 21177 YNR053C spliced 27.465298 110.306617 68.8859575 1.838130699 -0.061297 43 58 SH4021 4021 SRP RNA 5' - 13 13 25.305531 102.627703 63.966617 1.805953383 -0.061311 4 79 SH17456 17456 YIL148W_9_68708_69528_INTRON_9_442 intron 23.450347 112.333651 23.450347 89.883304 56.6668255 1.753328884 -0.061323 128 82 SH15673 15673 YBR191W_2_606228_607098_INTRON_12_399 intron 26.554094 133.903301 26.554094 108.349207 67.4516505 1.828992581 -0.061356 85 2 SH7032 7032 snR62 5' 23.508413 90.33696 56.9226865 1.755285389 -0.061364 20 28 SH3976 3976 RNase MRP RNaseMRP 296 311 52.769339 149.083468 100.9264035 2.004004797 -0.061376 76 34 SH10519 10519 RUF8 RUF8 521 542 23.699277 91.788124 57.7437005 1.761504612 -0.061387 176 65 SH6224 6224 snR42 5' 26.106157 106.755075 66.430616 1.82236828 -0.061388 47 28 SH15519 15519 YBR048W_2_332790_333771_INTRON_46_556 intron 35.827623 158.4973 35.827623 123.669677 79.74865 1.90172334 -0.061413 119 52 SH13171 13171 MT COX1 intronic 23.703742 114.530436 23.703742 91.826694 57.765218 1.761666417 -0.061436 152 87 SH6811 6811 snR52 5' 25.683086 104.578487 65.1307865 1.813786323 -0.061453 194 62 SH14256 14256 MT VAR1 includes 5’ processing site 5' 23.59539 113.604546 23.59539 91.009156 57.302273 1.758171849 -0.061473 84 65 SH20197 20197 YDR005C spliced 23.599199 91.038014 57.3186065 1.758295624 -0.061474 125 59 SH2923 2923 Pro8 3' flank 21.857919 78.221994 50.0399565 1.699316923 -0.061476 17 102 SH14064 14064 MT COB Cytbi4 23.950559 116.668596 23.950559 93.718037 58.834298 1.769630576 -0.061517 119 26 SH10937 10937 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1571 1584 583.600493 920.557699 752.079096 2.876263518 -0.061541 152 3 SH8002 8002 snoRNA cluster 2 intergenic 24.850621 124.171331 24.850621 100.32071 62.5856655 1.796474875 -0.061555 23 49 SH17783 17783 YKL180W_11_109271_110131_INTRON_310_615 intron 23.02963 108.710413 23.02963 86.680783 54.8552065 1.739217854 -0.061576 136 82 SH11691 11691 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5341 5359 1282.604174 1853.411823 1568.007999 3.195348274 -0.061596 173 41 SH20694 20694 YIL148W spliced 27.080711 109.500832 68.2907715 1.834362019 -0.061607 68 67 SH5325 5325 snR30 snR30 476 488 212.586726 387.229088 299.907907 2.476987916 -0.061628 191 4 SH17002 17002 YGR118W_7_726968_727725_INTRON_66_385 3' exon 195.761231 557.289948 195.761231 362.528717 279.144974 2.445829813 -0.061633 114 16 SH16182 16182 YDR367W_4_1212837_1213603_INTRON_31_131 5' exon 23.026875 108.693018 23.026875 86.666143 54.846509 1.73914899 -0.061645 109 17 SH7210 7210 snR64 3' 23.32699 88.963826 56.145408 1.749314242 -0.061671 13 6 SH20768 20768 YKL002W spliced 39.930529 129.941628 84.9360785 1.929092206 -0.061687 125 15 SH3489 3489 Tyr1 5' flank - tRNA3 3 30.856176 116.324306 73.590241 1.866820225 -0.061718 196 29 SH12648 12648 MT_15S MT_15S 25.336388 127.158192 25.336388 102.821804 64.079096 1.806716376 -0.061756 109 68 SH6854 6854 snR56 5' 24.258719 96.125223 60.191971 1.779538565 -0.06181 47 78 SH13855 13855 MT COB Cytbi2 25.734604 129.608929 25.734604 104.874325 65.3044645 1.814942873 -0.061826 140 71 SH13380 13380 MT COX1 Exon 5b 24.07836 117.810389 24.07836 94.732029 59.4051945 1.773824422 -0.061838 198 40 SH5812 5812 snR35 snR35 246 263 24.349881 96.839144 60.5945125 1.782433296 -0.061856 10 82 SH15132 15132 MT tRNA Phe tRNA / 3' 26.617 134.134475 26.617 108.517475 67.5672375 1.829736163 -0.06191 78 42 SH12791 12791 MT COX1 COX1ai1 27.557478 137.096835 27.557478 110.539357 69.0484175 1.83915373 -0.061913 14 45 SH7903 7903 snoRNA cluster1 intergenic 23.222529 110.406372 23.222529 88.183843 55.703186 1.745880036 -0.061914 72 39 SH5099 5099 snR11 snR11 96 117 22.387061 81.91846 52.1527605 1.717277301 -0.061931 105 3 SH4954 4954 snR9 176-187 + 3' 176 23.692321 91.789053 57.740687 1.761481947 -0.061957 81 94 SH11220 11220 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2986 3009 22.02669 79.419522 50.723106 1.705205839 -0.061965 153 17 SH5662 5662 snR34 snR34 231 246 26.329248 107.895708 67.112478 1.826803275 -0.06197 18 47 SH21839 21839 copy of SH17169 31.708707 117.598133 74.65342 1.873049708 -0.061975 102 45 SH7340 7340 snR68 5' 24.297998 96.447326 60.372662 1.780840326 -0.06198 112 29 SH141 141 Arg1 3' flank 22.839319 85.278078 54.0586985 1.732865586 -0.061992 70 30 SH15046 15046 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.754561 106.397844 22.754561 84.643283 53.698922 1.729965567 -0.062024 94 86 SH6162 6162 snR39B 3' 22.558643 83.180446 52.8695445 1.723205569 -0.062045 212 99 SH20752 20752 YJR021C spliced 26.123876 106.902273 66.5130745 1.822907023 -0.062052 27 25 SH18903 18903 YOL120C_15_94401_93394_INTRON_113_559 intron 23.977919 116.958474 23.977919 93.980555 58.979237 1.77069915 -0.062062 210 39 SH14948 14948 MT tRNA Met 5' / tRNA 24.280524 119.600043 24.280524 96.319519 60.3000215 1.780317467 -0.062062 36 9 SH5727 5727 snR34 3' 24.389202 97.167795 60.7784985 1.783749967 -0.062076 129 50 SH2103 2103 Met1 5' flank 22.943581 86.073926 54.5087535 1.736466251 -0.062083 212 14 SH8956 8956 snR17a / U3a U3a 66 83 24.516362 98.168139 61.3422505 1.787759705 -0.062123 15 61 SH1102 1102 Gly4 5' flank - tRNA2 2 24.394015 97.211392 60.8027035 1.78392289 -0.062136 19 9 SH17495 17495 YJL041W_10_365480_368069_INTRON_2_119 intron 25.783958 129.938304 25.783958 105.154346 65.469152 1.816036716 -0.062138 118 32 SH12901 12901 MT COX1 intronic/exon2 22.554187 104.710891 22.554187 83.156704 52.8554455 1.723089738 -0.062154 51 32 SH4784 4784 snR5 snR5 91 110 22.450767 82.390142 52.4204545 1.719500782 -0.062169 12 29 SH8859 8859 LSR1 / U2 RNA U2 936 952 927.286148 1386.719665 1157.002907 3.06333445 -0.062172 98 55 SH16076 16076 YDR025W_4_491510_492319_INTRON_46_384 intron 25.705875 129.46247 25.705875 104.756595 65.231235 1.814455601 -0.062194 179 66 SH5007 5007 snR10 snR10 66 82 26.075758 106.66668 66.371219 1.821979794 -0.062209 110 50 SH14262 14262 MT VAR1 includes 5’ processing site 5' 27.292498 136.282884 27.292498 109.990386 68.641442 1.836586398 -0.06221 84 46 SH14621 14621 MT 21S rRNA Sce1 endonuc 23.517765 113.007454 23.517765 90.489689 57.003727 1.755903252 -0.062211 105 52 SH3373 3373 Thr4 5' flank 23.961201 93.867075 58.914138 1.770219528 -0.062217 49 7 SH20 20 Ala1 5' flank - tRNA10 5' flank 10 250.963997 443.908979 347.436488 2.540875426 -0.062252 27 24 SH20146 20146 YDL115C spliced 23.823322 92.814919 58.3191205 1.765810966 -0.062256 131 63 SH15492 15492 YBL092W_2_45639_46364_INTRON_1_333 intron 30.573454 145.505677 30.573454 115.932223 73.2528385 1.864824458 -0.062256 106 65 SH5553 5553 snR33 snR33 51 71 22.781182 84.864022 53.822602 1.730964689 -0.062258 66 38 SH14556 14556 MT 21S rRNA 21S rRNA3 84.33108 279.979845 84.33108 196.648765 140.4899225 2.147645173 -0.062296 116 72 SH1179 1179 His1 3' flank 32.142194 118.260661 75.2014275 1.876226085 -0.062348 38 40 SH17675 17675 YKL006W_11_431544_432358_INTRON_130_527 5' exon 26.783742 134.687854 26.783742 108.904112 67.843927 1.831510978 -0.062356 82 34 SH1977 1977 Lys2 3' flank 78.51016 187.827661 133.1689105 2.124402847 -0.062358 67 5 SH13715 13715 MT tRNAGlu (and 5' processing site for COB) 3' 21.686334 97.808944 21.686334 77.12261 49.404472 1.693766262 -0.062376 103 23 SH4780 4780 snR5 snR5 71 85 125.903823 259.364504 192.6341635 2.284733311 -0.062376 61 87 SH4881 4881 snR8 186-190 + 3' 186 21.875025 78.411725 50.143375 1.700213562 -0.062396 29 95 SH17672 17672 YKL006C-A_11_430270_429836_INTRON_37_177 intron/exon 28.887397 141.258644 28.887397 113.371247 71.129322 1.852048669 -0.062405 182 21 SH1158 1158 His1 tRNA 11 28 25.267828 102.523819 63.8958235 1.805472472 -0.062422 129 15 SH13907 13907 MT COB Cytbi3 23.580534 113.567895 23.580534 90.987361 57.2839475 1.758032938 -0.062443 92 70 SH11135 11135 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2561 2574 34.953621 122.426181 78.689901 1.895918999 -0.062469 98 72 SH3892 3892 RNaseP 3' 66.648202 169.886548 118.267375 2.072864958 -0.062472 140 22 SH17060 17060 YGR214W_7_920570_921783_INTRON_91_545 intron 25.101546 125.777567 25.101546 101.676021 63.3887835 1.802012417 -0.062475 43 55 SH13426 13426 MT COX1 intronic 22.934558 107.976239 22.934558 86.041681 54.4881195 1.73630182 -0.062484 74 86 SH12899 12899 MT COX1 intronic 34.096947 154.279914 34.096947 121.182967 77.639957 1.890085286 -0.062509 132 81 SH15674 15674 YBR191W_2_606228_607098_INTRON_12_399 intron 31.494374 147.808642 31.494374 117.314268 74.404321 1.871598158 -0.062518 210 73 SH20936 20936 YLR406C spliced 24.243807 96.079478 60.1616425 1.779319685 -0.062521 60 50 SH19377 19377 YPR043W_16_654161_654842_INTRON_3_405 intron 27.019497 135.441976 27.019497 109.422479 68.220988 1.833918005 -0.062525 187 80 SH15396 15396 YBL050W_2_125087_126081_INTRON_31_146 5' exon 28.108563 138.854179 28.108563 111.745616 69.9270895 1.844645452 -0.06253 17 10 SH17112 17112 YHR001W-A_8_107819_108115_INTRON_7_69 3' exon 25.767774 129.871757 25.767774 105.103983 65.4358785 1.815815937 -0.062539 207 76 SH20377 20377 YER179W spliced 26.008572 106.351211 66.1798915 1.820726051 -0.06259 157 88 SH11542 11542 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4596 4613 637.0342 994.925312 815.979756 2.911679384 -0.062591 96 96 SH21892 21892 copy of SH18802 36.680328 125.068035 80.8741815 1.907809898 -0.06264 153 102 SH8256 8256 snoRNA cluster4 5' 25.074966 125.631018 25.074966 101.556052 63.315509 1.801510103 -0.062676 23 77 SH17124 17124 YHR010W_8_126513_127484_INTRON_32_592 intron 30.986564 146.558856 30.986564 116.572292 73.779428 1.867935284 -0.062677 78 100 SH4830 4830 snR8 5' 23.792778 92.622581 58.2076795 1.764980286 -0.062685 112 32 SH15235 15235 MT COX3 3' 22.783962 106.70776 22.783962 84.923798 53.85388 1.731216998 -0.062695 148 72 SH10159 10159 RUF6 RUF6 641 660 45.692021 138.660741 92.176381 1.964619653 -0.0627 212 37 SH13573 13573 MT COX1 Exon 6 23.917557 116.497339 23.917557 93.579782 58.7486695 1.768998035 -0.062712 164 5 SH21443 21443 TH299 - control cDNA - flipped; WTP_225 26.755792 108.865414 67.810603 1.831297606 -0.062732 212 32 SH10746 10746 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 616 629 36.288485 124.46875 80.3786175 1.905140532 -0.062737 195 91 SH4817 4817 snR5 3' 24.043799 94.556377 59.300088 1.773055338 -0.062773 159 40 SH11700 11700 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5386 5399 9449.07981 10759.89136 10104.48558 4.004514209 -0.062774 138 97 SH15263 15263 MT 9S rRNA 9S 28.184027 139.104336 28.184027 111.920309 70.052168 1.845421581 -0.062788 159 3 SH11658 11658 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5176 5191 1480.172057 2108.903143 1794.5376 3.253952562 -0.062789 31 52 SH1013 1013 Gly2 tRNA 56 68 28.791332 113.196586 70.993959 1.851221395 -0.062799 52 23 SH1928 1928 Lys1 3' flank 22.776226 84.875268 53.825747 1.730990066 -0.062804 98 51 SH17336 17336 YIL018W_9_316766_317930_INTRON_5_404 intron 24.165474 118.665768 24.165474 95.500294 59.832884 1.776939937 -0.062811 102 31 SH17722 17722 YKL156W_11_158616_159214_INTRON_4_353 5' exon 31.500934 147.841517 31.500934 117.340583 74.4207585 1.871694092 -0.062812 161 38 SH3626 3626 Val1 3' flank 60.999721 161.450653 111.225187 2.046203145 -0.062863 160 70 SH7702 7702 snoRNA cluster1 intergenic 24.414296 120.859325 24.414296 97.445029 60.9296625 1.784828772 -0.062888 68 104 SH9530 9530 RUF3 RUF3 36 50 49.682544 144.633389 97.1579665 1.987478417 -0.062895 160 3 SH7733 7733 snoRNA cluster1 intergenic 26.771183 134.681189 26.771183 108.910006 67.8405945 1.831489645 -0.062928 153 37 SH20853 20853 YLR061W spliced 29.41913 114.220475 71.8198025 1.856244207 -0.062937 15 62 SH13086 13086 MT COX1 COX1ai3 22.356726 103.146167 22.356726 81.789441 52.0730835 1.716613295 -0.062938 38 62 SH51 51 Ala1 3' flank 25.537593 103.951281 64.744437 1.811202459 -0.062938 135 9 SH18255 18255 YML034W_13_209525_212155_INTRON_1921_2046 3' exon 27.982797 138.487253 27.982797 111.504456 69.7436265 1.843504526 -0.062951 58 12 SH10618 10618 RUF8 3' 25.276164 102.609644 63.942904 1.805792356 -0.062957 38 45 SH19553 19553 CBP1 2.2 36.535706 124.866618 80.701162 1.906879788 -0.062984 171 90 SH18690 18690 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.735339 137.718005 27.735339 110.982666 69.3590025 1.841102839 -0.06301 166 9 SH18791 18791 YNL301C_14_64561_63569_INTRON_113_544 intron 25.637646 129.11196 25.637646 104.474314 65.05598 1.813287223 -0.063036 11 71 SH1408 1408 Leu1 111-115 + 3' flank 111 22.978412 86.424106 54.701259 1.737997322 -0.063037 99 5 SH7923 7923 snoRNA cluster1 snR72 26.884912 135.047501 26.884912 109.162589 68.0237505 1.832660573 -0.063046 54 53 SH12490 12490 MT_tRNA Pro 5' 34.618143 155.593614 34.618143 121.975471 78.296807 1.893744052 -0.063054 8 58 SH20193 20193 YDR005C spliced 31.104243 116.768299 73.936271 1.868857543 -0.063055 131 31 SH5953 5953 snR36 snR36 221 237 76.930126 185.501762 131.215944 2.117986609 -0.063072 24 46 SH13633 13633 MT ATP6 ATP6 25.379347 127.530003 25.379347 103.150656 64.2650015 1.807974522 -0.063097 144 23 SH9136 9136 snR7 U5 RNA 5' 23.140911 87.66833 55.4046205 1.743545984 -0.063103 207 35 SH877 877 Glu2 3' flank 24.204261 95.830415 60.017338 1.778276729 -0.06311 104 99 SH14983 14983 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 24.596079 122.495567 24.596079 98.899488 61.7477835 1.790621373 -0.063156 49 21 SH14678 14678 MT 21S rRNA 21S rRNA4 22.899857 107.739641 22.899857 85.839784 54.3698205 1.735357899 -0.06316 167 40 SH12117 12117 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7471 7488 28.713524 113.056135 70.8848295 1.850553299 -0.06317 156 31 SH12771 12771 MT COX1 COX1ai1 25.097426 125.809522 25.097426 101.712096 63.404761 1.80212187 -0.063191 165 20 SH13615 13615 MT ATP6 5' 25.697212 129.491718 25.697212 104.794506 65.245859 1.814552953 -0.063198 33 55 SH9161 9161 snR7 U5 RNA U5 76 93 22.691872 84.277435 53.4846535 1.728229187 -0.063207 129 85 SH16424 16424 YER074W_5_306319_307192_INTRON_4_469 exon/intron 25.777225 129.985522 25.777225 105.208297 65.492761 1.8161933 -0.063212 28 34 SH17239 17239 YHR079C-A_8_262554_262193_INTRON_114_199 intron 25.087305 125.750043 25.087305 101.662738 63.3750215 1.80191812 -0.063222 2 88 SH12806 12806 MT COX1 COX1ai1 25.434452 127.882686 25.434452 103.448234 64.441343 1.809164583 -0.063274 194 74 SH10520 10520 RUF8 RUF8 526 545 23.503337 90.478531 56.990934 1.755805774 -0.063277 103 89 SH3023 3023 Ser2 76-82 + 3' flank 76 21.468527 75.72029 48.5944085 1.6865863 -0.063308 32 100 SH12554 12554 MT_15S 5' 22.370629 103.289268 22.370629 81.918639 52.144634 1.717209624 -0.063324 143 10 SH6393 6393 snR43 206-209 + 3' 206 22.42332 82.289327 52.3563235 1.718969142 -0.063343 168 103 SH14594 14594 MT 21S rRNA Sce1 endonuc 26.354688 133.385548 26.354688 108.03086 67.192774 1.827322571 -0.063362 4 61 SH18589 18589 YNL050C_14_534978_534075_INTRON_18_108 intron/exon 22.508913 104.433897 22.508913 82.924984 52.7169485 1.721950263 -0.063364 66 79 SH14281 14281 MT VAR1 includes 5’ processing site VAR1 24.064288 117.839013 24.064288 94.774725 59.4195065 1.773929041 -0.063394 129 2 SH5339 5339 snR30 snR30 546 563 32.951854 119.541723 76.2467885 1.882221556 -0.063413 42 83 SH10216 10216 RUF6 RUF6 926 945 23.259578 88.609348 55.934463 1.747679473 -0.063439 177 58 SH18782 18782 YNL265C_14_145280_144279_INTRON_28_132 3' exon 24.445899 121.194596 24.445899 97.748697 61.097298 1.786022004 -0.063449 146 38 SH4538 4538 U3b (snR17b) U3b 246 267 29.453188 114.301815 71.8775015 1.856592972 -0.063464 61 25 SH18291 18291 YML073C_13_124172_123227_INTRON_16_430 5' exon 30.824568 146.202973 30.824568 116.378405 73.6014865 1.866886586 -0.063517 193 24 SH14452 14452 MT 21S rRNA 21S rRNA3 78.641325 265.79741 78.641325 188.156085 133.398705 2.125151614 -0.063579 185 62 SH1184 1184 His1 3' flank 28.186919 111.973838 70.0803785 1.845596439 -0.063586 36 5 SH21083 21083 YMR292W spliced 24.59427 98.929305 61.7617875 1.790719857 -0.06359 96 44 SH847 847 Glu2 tRNA 1 17 3430.350828 4425.950828 3928.150828 3.594188155 -0.063615 120 96 SH9290 9290 RUF1 RUF1 26 42 23.864335 93.260823 58.562579 1.767620194 -0.063641 69 72 SH19528 19528 CBP1 1.2 66.722663 170.108455 118.415559 2.073408769 -0.063658 89 90 SH4067 4067 SRP RNA SRP RNA 226 245 22.221366 80.90536 51.563363 1.712341235 -0.063669 185 33 SH1276 1276 Ile2 tRNA-intron 76 93 24.205082 95.893241 60.0491615 1.778506947 -0.063684 104 70 SH10144 10144 RUF6 RUF6 566 582 62.222923 163.328553 112.775738 2.052215678 -0.063707 63 28 SH9234 9234 snR6 / U6 RNA U6 41 58 232.999769 417.770985 325.385377 2.512398032 -0.063718 59 69 SH9576 9576 RUF3 RUF3 266 283 22.774977 84.947829 53.861403 1.731277662 -0.063727 58 70 SH12154 12154 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7656 7673 1339.472056 1929.678433 1634.575245 3.213404917 -0.063731 18 62 SH2093 2093 Lys4 3' flank 24.284833 96.519098 60.4019655 1.781051071 -0.06374 102 40 SH15522 15522 YBR048W_2_332790_333771_INTRON_46_556 intron 31.880539 148.831826 31.880539 117.951287 74.915913 1.874574077 -0.063761 124 80 SH2976 2976 Ser1 3' flank 26.928085 109.297289 68.112687 1.833228013 -0.063763 60 26 SH12571 12571 MT_15S MT_15S 23.242581 110.754658 23.242581 88.512077 55.877329 1.747235638 -0.0638 2 76 SH8048 8048 snoRNA cluster 2 intergenic 25.538522 128.569847 25.538522 104.031325 64.7849235 1.81147395 -0.06386 171 54 SH11841 11841 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6091 6104 1526.130705 2168.74779 1847.439248 3.266570166 -0.06386 72 86 SH13844 13844 MT COB Cytbi2 22.675979 105.892586 22.675979 84.216607 53.446293 1.727917588 -0.063869 163 102 SH14623 14623 MT 21S rRNA Sce1 endonuc 23.530701 113.275214 23.530701 90.744513 57.137607 1.756922048 -0.06388 194 55 SH4891 4891 snR8 3' 23.885379 93.446967 58.666173 1.768387759 -0.0639 120 49 SH17692 17692 YKL006W_11_431544_432358_INTRON_130_527 intron 23.592925 113.814233 23.592925 91.221308 57.4071165 1.758965733 -0.063942 7 84 SH5045 5045 snR10 3' 24.501143 98.233138 61.3671405 1.787935887 -0.063955 52 18 SH6554 6554 snR46 3' 24.885601 100.69245 62.7890255 1.797883743 -0.064003 175 74 SH12397 12397 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.88874 116.372268 23.88874 93.483528 58.686134 1.768535501 -0.064013 193 75 SH17193 17193 YHR021C_8_148660_147862_INTRON_4_553 intron 21.463888 96.212059 21.463888 75.748171 48.6060295 1.686690146 -0.064083 171 72 SH8283 8283 snoRNA cluster4 intergenic 24.037421 117.673804 24.037421 94.636383 59.336902 1.773324868 -0.064105 201 55 SH5269 5269 snR30 snR30 196 213 26.472723 108.333695 67.403209 1.828680573 -0.06416 12 75 SH19359 19359 YPL249C-A_16_76239_75699_INTRON_17_254 3' exon 27.316973 136.47387 27.316973 110.156897 68.736935 1.837190163 -0.064162 27 58 SH8152 8152 snoRNA cluster 3; intergenic 24.445133 121.26068 24.445133 97.815547 61.13034 1.786256811 -0.064175 155 76 SH15585 15585 YBR084C-A_2_415219_414144_INTRON_3_508 intron 22.888326 107.733154 22.888326 85.844828 54.366577 1.73533199 -0.064188 169 23 SH2199 2199 Met2 3' flank 23.848193 93.191121 58.519657 1.767301772 -0.064205 4 99 SH13537 13537 MT COX1 intronic 26.180427 132.557262 26.180427 107.376835 66.778631 1.824637512 -0.064214 142 70 SH10395 10395 RUF8 5' 26.347594 108.065965 67.2067795 1.827413085 -0.064243 134 83 SH5695 5695 snR34 snR34 396 415 23.774071 92.630214 58.2021425 1.764938972 -0.064268 56 15 SH19736 19736 Negative Control 23.945686 93.946178 58.945932 1.770453839 -0.064275 100 72 SH17484 17484 YJL024C_10_396288_395627_INTRON_23_99 exon/intron 22.501291 104.448996 22.501291 82.947705 52.724498 1.722012453 -0.064279 71 24 SH875 875 Glu2 3' flank 28.423221 112.51633 70.4697755 1.848002888 -0.06433 156 82 SH6511 6511 snR46 snR46 46 63 27.474187 110.503313 68.98875 1.838778276 -0.06433 18 40 SH17582 17582 YJL191W_10_73786_74610_INTRON_11_418 intron 27.538159 137.182152 27.538159 110.643993 69.091076 1.839421956 -0.064397 48 25 SH15378 15378 YBL027W_2_168385_169338_INTRON_3_386 intron 23.059769 109.227352 23.059769 87.167583 55.113676 1.741259379 -0.064405 165 14 SH5802 5802 snR35 snR35 196 215 28.281872 112.223204 70.252538 1.846662019 -0.064409 56 57 SH14414 14414 MT 21S rRNA 21S rRNA3 53.378287 202.618889 53.378287 150.240602 101.8094445 2.007788068 -0.064433 73 3 SH15748 15748 YCR031C_3_178212_177492_INTRON_8_314 exon/intron 22.548276 104.863904 22.548276 83.315628 52.931952 1.72371791 -0.064485 171 12 SH9642 9642 RUF4 5' - 1 -14 1 36.742016 125.279705 81.0108605 1.908543245 -0.064492 150 22 SH2121 2121 Met1 5' flank - tRNA3 8 24.595608 99.032523 61.8140655 1.791087308 -0.064503 14 69 SH21811 21811 copy of SH15491 22.861009 85.668733 54.264871 1.734518775 -0.064529 39 77 SH17838 17838 YKR094C_11_618384_617630_INTRON_9_376 intron 27.24269 136.263984 27.24269 110.021294 68.631992 1.836526604 -0.064568 169 42 SH14153 14153 MT COB intronic 22.631748 105.578688 22.631748 83.94694 53.289344 1.726640374 -0.06457 190 67 SH16791 16791 YGL103W_7_310965_311925_INTRON_50_560 intron 24.094166 118.216109 24.094166 95.121943 59.6080545 1.775304947 -0.064588 168 101 SH4029 4029 SRP RNA SRP RNA 36 55 23.321481 89.193563 56.257522 1.750180599 -0.064592 72 33 SH15798 15798 YDL061C_4_341182_340627_INTRON_1_408 intron 944.257596 2354.823294 944.257596 1411.565698 1177.911647 3.071112716 -0.064614 72 84 SH20367 20367 YER133W spliced 26.391691 108.185218 67.2884545 1.827940553 -0.064646 132 10 SH15609 15609 YBR119W_2_479296_480281_INTRON_9_97 intron/exon 23.796287 115.632986 23.796287 92.836699 58.316493 1.765791399 -0.064654 60 61 SH17169 17169 YHR016C_8_138446_136872_INTRON_48_215 3' exon 29.369677 142.609466 29.369677 114.239789 71.804733 1.856153072 -0.064661 40 66 SH5973 5973 snR36 snR36 321 338 23.427893 90.02375 56.7258215 1.753780794 -0.064664 64 71 SH11868 11868 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6226 6239 845.451099 1279.388081 1062.41959 3.02629607 -0.064674 199 80 SH6847 6847 snR52 3' 97.919172 217.645497 157.7823345 2.198058377 -0.064693 125 33 SH890 890 Glu3 5' flank 26.818623 109.115705 67.967164 1.832299149 -0.064709 57 85 SH5048 5048 snR10 3' 24.118215 95.323204 59.7207095 1.776124959 -0.064742 191 20 SH19647 19647 SIR1 2.2 25.786561 105.383632 65.5850965 1.816805162 -0.064751 149 8 SH12706 12706 MT ORF 8 (hypothetical) ORF8 22.941233 108.244633 22.941233 86.3034 54.6223165 1.737370114 -0.064826 65 27 SH4959 4959 snR9 3' 25.971973 106.354923 66.163448 1.82061813 -0.064903 67 101 SH16665 16665 YFR032C-A_6_223758_223245_INTRON_1_331 intron 22.997412 108.736433 22.997412 86.739021 54.8682165 1.739320844 -0.064919 203 76 SH5471 5471 snR32 snR32 16 32 24.788425 100.268935 62.52868 1.796079261 -0.064934 93 3 SH15795 15795 YDL061C_4_341182_340627_INTRON_1_408 exon/intron 24.247998 119.59904 24.247998 96.351042 60.29952 1.780313855 -0.064942 24 70 SH13846 13846 MT COB Cytbi2 22.753294 106.646192 22.753294 84.892898 53.823096 1.730968676 -0.064946 138 91 SH3074 3074 Ser3 tRNA 66 78 26.575366 108.602106 67.588736 1.829874325 -0.064946 35 65 SH7484 7484 snR71 snR71 36 57 23.36093 89.533121 56.4470255 1.751641062 -0.064963 105 50 SH10270 10270 RUF7 5' 25.108009 101.908549 63.508279 1.802830344 -0.064971 40 63 SH20133 20133 YDL083C spliced 27.759636 111.151046 69.455341 1.841705648 -0.064989 36 102 SH8250 8250 snoRNA cluster4 5' 22.098965 101.262725 22.098965 80.16376 51.1313625 1.708687366 -0.065005 28 17 SH14384 14384 MT ORF9 and ORF10 (hypothetical) 3' 23.694702 114.791412 23.694702 92.09671 57.895706 1.762646354 -0.065027 156 77 SH21893 21893 copy of SH18803 29.174807 113.9612 71.5680035 1.854718902 -0.065051 158 57 SH12004 12004 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6906 6928 22.639519 84.050752 53.3451355 1.727094823 -0.065089 211 15 SH17821 17821 YKR057W_11_551293_551878_INTRON_25_346 intron 22.198432 102.060403 22.198432 80.861971 51.5302015 1.712061841 -0.065094 136 55 SH393 393 Asn1 46-61 46 61 24.268631 96.526926 60.3977785 1.781020965 -0.065095 4 53 SH15036 15036 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.649249 114.407676 23.649249 91.758427 57.703838 1.7612047 -0.065109 159 80 SH866 866 Glu2 3' flank 22.853752 85.666268 54.26001 1.734479869 -0.065115 134 69 SH15103 15103 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 22.818383 107.217455 22.818383 85.399072 54.1087275 1.733267321 -0.065117 158 44 SH727 727 Gln4 5' flank 24.776779 100.22422 62.5004995 1.795883488 -0.065123 199 67 SH47 47 Ala1 3' flank 25.44342 103.644962 64.544191 1.809857162 -0.065128 155 55 SH10360 10360 RUF7 RUF7 411 428 26.831672 109.17025 68.000961 1.83251505 -0.065164 213 77 SH15563 15563 YBR084C-A_2_415219_414144_INTRON_3_508 5' exon 24.821766 124.280918 24.821766 100.459152 62.640459 1.796854931 -0.065184 113 77 SH8829 8829 LSR1 / U2 RNA U2 786 805 21.334989 74.969549 48.152269 1.682616756 -0.06525 12 17 SH5880 5880 snR35 3' 25.555128 104.230504 64.892816 1.812196621 -0.065251 2 70 SH6760 6760 snR50 5' 99.407335 220.005895 159.706615 2.203322905 -0.065278 93 45 SH12085 12085 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7311 7328 61.077133 161.778956 111.4280445 2.046994509 -0.065308 214 51 SH13725 13725 MT COB 5' 24.010533 117.556738 24.010533 94.546205 59.278369 1.772896246 -0.065314 97 44 SH17393 17393 YIL069C_9_232366_231550_INTRON_4_412 intron 24.038975 117.806528 24.038975 94.767553 59.403264 1.773810309 -0.065331 138 42 SH8288 8288 snoRNA cluster4 intergenic 25.925173 131.075646 25.925173 106.150473 66.037823 1.819792748 -0.065356 184 59 SH19079 19079 YOR293W_15_867094_867848_INTRON_53_489 intron 24.370175 120.716606 24.370175 97.346431 60.858303 1.784319838 -0.065357 23 26 SH2977 2977 Ser1 3' flank 22.122542 80.357466 51.240004 1.709609155 -0.065377 100 93 SH2591 2591 Pro3 5' flank 23.382627 89.740964 56.5617955 1.752523187 -0.065388 82 11 SH14602 14602 MT 21S rRNA Sce1 endonuc 23.852832 116.194188 23.852832 93.341356 58.597094 1.767876079 -0.065403 201 25 SH14835 14835 MT tRNA Asp 5' 23.726477 115.101663 23.726477 92.375186 58.0508315 1.763808445 -0.065409 114 60 SH10775 10775 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 761 779 22.330298 81.811845 52.0710715 1.716596515 -0.06545 28 27 SH14363 14363 MT ORF9 and ORF10 (hypothetical) ORF9 24.346256 120.514994 24.346256 97.168738 60.757497 1.783599874 -0.065453 116 53 SH307 307 Arg4 3' flank 25.970669 106.395312 66.1829905 1.820746387 -0.065468 96 6 SH7799 7799 snoRNA cluster1 snR75 24.595299 122.723665 24.595299 99.128366 61.8618325 1.791422781 -0.065469 51 90 SH2638 2638 Pro3 3' flank 33.407077 120.34123 76.8741535 1.885780347 -0.06548 121 85 SH19046 19046 YOR234C_15_779404_778554_INTRON_20_546 intron 3016.154472 6973.849608 3016.154472 3958.695136 3487.424804 3.542504852 -0.065481 187 20 SH3668 3668 Val2 3' flank 23.505117 90.701055 57.103086 1.756659579 -0.065492 198 100 SH254 254 Arg3 3' flank 52.386271 148.832154 100.6092125 2.00263775 -0.065502 87 59 SH6400 6400 snR43 3' 22.379995 82.165512 52.2727535 1.718275377 -0.065514 179 12 SH20692 20692 YIL148W spliced 29.562435 114.582666 72.0725505 1.857769891 -0.065515 41 79 SH21620 21620 copy of SH7515 26.807107 109.1376 67.9723535 1.832332307 -0.065517 136 4 SH3202 3202 Ser5 3' flank 23.297661 89.096377 56.197019 1.749713279 -0.065522 197 91 SH5020 5020 snR10 snR10 131 149 23.930154 93.947724 58.938939 1.770402314 -0.065531 75 48 SH11349 11349 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3631 3647 183.407502 345.157684 264.282593 2.422068559 -0.065574 71 80 SH17652 17652 YJR145C_10_702761_701720_INTRON_15_270 intron 22.456648 104.185949 22.456648 82.729301 52.5929745 1.720927734 -0.065591 165 57 SH14139 14139 MT COB intronic 24.490762 121.810897 24.490762 98.320135 61.4054485 1.788206908 -0.065628 40 82 SH18459 18459 YMR143W_13_551927_552902_INTRON_25_568 intron 24.796043 124.158895 24.796043 100.362852 62.5794475 1.796431725 -0.065632 49 41 SH16993 16993 YGR118W_7_726968_727725_INTRON_66_385 intron 32.966771 151.661563 32.966771 119.694792 76.3307815 1.882699709 -0.065647 151 56 SH1789 1789 Leu8 5' flank 22.835042 85.572644 54.203843 1.734030079 -0.06565 48 56 SH19702 19702 Negative Control 28.955164 113.654659 71.3049115 1.853119445 -0.065654 133 98 SH5776 5776 snR35 snR35 66 87 23.969385 94.264689 59.117037 1.771712659 -0.065685 93 49 SH16790 16790 YGL103W_7_310965_311925_INTRON_50_560 intron 24.004009 117.537207 24.004009 94.533198 59.2686035 1.772824694 -0.065699 75 22 SH18657 18657 YNL112W_14_413636_416278_INTRON_1274_2275 intron 25.495121 128.455636 25.495121 103.960515 64.727818 1.811090967 -0.065733 83 28 SH6664 6664 snR48 3' 126.91329 261.393108 194.153199 2.288144551 -0.065736 209 91 SH3175 3175 Ser5 5' flank - tRNA11 11 309.608733 531.905479 420.757106 2.624031459 -0.065738 22 28 SH18403 18403 YMR125W_13_517538_520445_INTRON_26_347 intron 26.331832 133.449644 26.331832 108.117812 67.224822 1.827529661 -0.065746 149 39 SH7734 7734 snoRNA cluster1 intergenic 116.011958 360.174239 116.011958 245.162281 180.5871195 2.256686771 -0.065805 137 6 SH16701 16701 YGL031C_7_438393_437938_INTRON_1_456 intron 27.502649 137.154359 27.502649 110.65171 69.0771795 1.839334597 -0.065821 10 95 SH16531 16531 YER131W_5_423587_424307_INTRON_1_361 intron 28.462092 140.150129 28.462092 112.688037 70.5750645 1.848651284 -0.065834 147 29 SH12767 12767 MT COX1 COX1ai1 25.616949 129.218497 25.616949 104.601548 65.1092485 1.813642683 -0.065888 192 56 SH12695 12695 MT ORF 8 (hypothetical) 5' / ORF8 23.62317 114.256978 23.62317 91.633808 57.628489 1.760637233 -0.065892 139 51 SH11578 11578 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4776 4789 36.639947 125.210621 80.925284 1.908084232 -0.065894 60 19 SH1025 1025 Gly2 3' flank 22.058455 79.95538 51.0069175 1.707629079 -0.065901 201 94 SH2533 2533 Pro2 5' flank 23.510673 90.784778 57.1477255 1.75699895 -0.065939 197 80 SH7302 7302 snR66 snR66 1 20 81.603138 192.872726 137.237932 2.137474165 -0.065991 75 36 SH14210 14210 MT ATP9 5' 25.569771 128.941112 25.569771 104.371341 64.970556 1.812716583 -0.066049 107 81 SH9963 9963 RUF5-1 RUF5-1 621 640 20.102772 67.153995 43.6283835 1.639769122 -0.066049 108 42 SH16325 16325 YDR471W_4_1401759_1402553_INTRON_32_415 intron 41.861392 174.005905 41.861392 133.144513 87.5029525 1.942022707 -0.066072 107 77 SH6916 6916 snR58 5' 31.365751 117.326224 74.3459875 1.871257534 -0.066073 83 23 SH7683 7683 snoRNA cluster1 intergenic 43.981675 179.309548 43.981675 136.327873 90.154774 1.954988729 -0.066075 90 55 SH21135 21135 YNL147W spliced 30.171535 115.541442 72.8564885 1.862468236 -0.066085 104 87 SH9067 9067 snR14 / U4 RNA 5' 23.357849 89.617999 56.487924 1.751955614 -0.066123 185 24 SH18071 18071 YLR344W_12_819312_820142_INTRON_20_466 intron 23.579441 113.906476 23.579441 91.327035 57.453238 1.75931451 -0.066164 201 36 SH9214 9214 snR6 / U6 RNA 5' 24.449954 98.054874 61.252414 1.787123209 -0.066181 197 58 SH1311 1311 Ile3 5' flank 24.134637 95.59219 59.8634135 1.777161477 -0.066188 88 46 SH4479 4479 U3b (snR17b) 5' 21.662905 77.260197 49.461551 1.694267731 -0.06619 199 4 SH13360 13360 MT COX1 intronic 26.34925 133.532725 26.34925 108.183475 67.2663625 1.827797943 -0.066228 162 49 SH7508 7508 snR71 3' 24.272012 96.667619 60.4698155 1.781538644 -0.066248 112 41 SH9327 9327 RUF1 RUF1 211 227 143.63933 286.282847 214.9610885 2.332359853 -0.066269 33 18 SH15052 15052 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.817347 115.971125 23.817347 93.153778 58.4855625 1.767048671 -0.066287 191 44 SH13812 13812 MT COB Cytbi2 24.046484 117.965526 24.046484 94.919042 59.482763 1.774391133 -0.066291 96 12 SH19594 19594 AEP2/ATP13 2.1 24.282609 96.7593 60.5209545 1.781905769 -0.066338 67 97 SH9767 9767 RUF4 RUF4 611 627 25.298728 102.99866 64.148694 1.807187819 -0.066343 136 9 SH20356 20356 YER117W spliced 24.000533 94.569646 59.2850895 1.77294548 -0.066351 74 42 SH21627 21627 copy of SH7732 29.492303 114.522023 72.007163 1.857375701 -0.06636 97 89 SH21584 21584 copy of SH6041 24.031832 94.813595 59.4227135 1.77395248 -0.066373 10 84 SH18492 18492 YMR194W_13_651144_651909_INTRON_17_479 intron 30.331793 145.132368 30.331793 115.800575 73.066184 1.863716426 -0.06639 122 86 SH17490 17490 YJL024C_10_396288_395627_INTRON_23_99 3' exon 26.37464 133.622847 26.37464 108.248207 67.3114235 1.828088775 -0.06639 212 100 SH21119 21119 YNL112W spliced 28.003819 111.753506 69.8786625 1.844344584 -0.066402 133 43 SH21576 21576 copy of SH5622 25.471683 103.894921 64.683302 1.810792182 -0.06641 19 80 SH5529 5529 snR33 5' 28.493272 112.789078 70.641175 1.849057914 -0.066426 199 20 SH20912 20912 YLR333C spliced 25.770781 105.440858 65.6058195 1.816942365 -0.066429 8 86 SH9607 9607 RUF3 421-431 + 3' 421 23.984915 94.456865 59.22089 1.77247493 -0.066432 125 29 SH12622 12622 MT_15S MT_15S 149.100166 442.514089 149.100166 294.413923 221.7570445 2.345877425 -0.066435 92 34 SH20050 20050 YBR191W spliced 30.753896 116.437962 73.595929 1.866853792 -0.066451 97 50 SH17036 17036 YGR183C_7_859471_859058_INTRON_4_216 intron 26.229773 133.052797 26.229773 107.823024 67.0263985 1.826245884 -0.066465 90 100 SH2435 2435 Phe5 5' flank 29.336972 114.291333 71.8141525 1.85621004 -0.066505 34 43 SH7653 7653 snoRNA cluster1 5' 22.276146 102.796489 22.276146 81.520343 51.8982445 1.715152668 -0.066511 177 24 SH19621 19621 RNA14 1.1 22.662385 84.348392 53.5053885 1.728397522 -0.06652 48 5 SH12419 12419 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.299812 111.506522 23.299812 89.20671 56.253261 1.750147704 -0.066527 82 57 SH12360 12360 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.333482 133.500231 26.333482 108.166749 67.2501155 1.827693035 -0.066536 98 14 SH6893 6893 snR56 3' 22.1823 80.868713 51.5255065 1.71202227 -0.066553 40 87 SH11631 11631 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5041 5058 24.206444 96.188165 60.1973045 1.779577045 -0.06657 176 61 SH1764 1764 Leu7 3' flank 67.050551 170.872497 118.961524 2.075406519 -0.06659 96 58 SH11737 11737 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5571 5591 25.431968 103.705313 64.5686405 1.810021642 -0.066595 153 25 SH21737 21737 copy of SH12342 31.110711 116.978497 74.044604 1.869493415 -0.066605 128 42 SH14496 14496 MT 21S rRNA 21S rRNA3 41.301223 172.644799 41.301223 132.343576 86.8223995 1.938631784 -0.066615 27 19 SH18607 18607 YNL069C_14_494998_493953_INTRON_29_477 intron 23.588506 114.027649 23.588506 91.439143 57.5138245 1.759772248 -0.066625 68 33 SH21141 21141 YNL162W spliced 24.551869 98.903252 61.7275605 1.790479114 -0.06663 25 82 SH14090 14090 MT COB Cytbi4 25.128018 126.272129 25.128018 102.144111 63.6360645 1.803703313 -0.066631 87 20 SH9858 9858 RUF5-1 RUF5-1 96 118 23.836534 93.335236 58.585885 1.767792995 -0.066645 142 46 SH18521 18521 YMR225C_13_721402_720959_INTRON_59_205 exon/intron 307.191583 834.83868 307.191583 528.647097 417.91934 2.621092469 -0.066666 14 66 SH790 790 Glu1 5' flank 22.553249 83.5433 53.0482745 1.724671262 -0.066667 144 41 SH14723 14723 MT tRNA cys; tRNA his tRNA Cys / intergenic 24.650392 123.337514 24.650392 99.687122 62.168757 1.793572184 -0.066673 175 54 SH6073 6073 snR37 snR37 281 299 24.696823 99.937216 62.3170195 1.794606674 -0.066674 169 32 SH15081 15081 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.915895 124.976291 24.915895 101.060396 62.9881455 1.799258822 -0.066693 115 84 SH13867 13867 MT COB intronic 24.535623 122.318622 24.535623 98.782999 61.659311 1.789998667 -0.066709 74 29 SH11302 11302 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3396 3414 35.343221 123.242281 79.292751 1.899233486 -0.06671 151 54 SH1562 1562 Leu4 5' flank 22.715766 84.767379 53.7415725 1.73031037 -0.066717 139 92 SH1354 1354 Ile3 3' flank 26.577006 108.708933 67.6429695 1.830222665 -0.066737 88 31 SH12524 12524 MT_ORF6 + ORF7 (hypothetical) ORF6/7 22.582874 105.354094 22.582874 83.77122 53.177047 1.725724217 -0.066739 152 31 SH9574 9574 RUF3 RUF3 256 270 26.465729 108.466989 67.466359 1.829087273 -0.066741 108 56 SH11326 11326 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3516 3533 29768.37231 29598.91365 29683.64298 4.472517199 -0.066753 91 11 SH15583 15583 YBR084C-A_2_415219_414144_INTRON_3_508 intron 23.903241 116.763185 23.903241 93.859944 58.8815925 1.769979547 -0.06677 188 87 SH4459 4459 telomerase RNA 3' 24.768377 100.31156 62.5399685 1.796157658 -0.066779 147 20 SH2985 2985 Ser1 3' flank 23.700338 92.306038 58.003188 1.763451864 -0.066786 185 101 SH19457 19457 CYC1 24.360566 97.41466 60.887613 1.784528949 -0.066794 4 59 SH4536 4536 U3b (snR17b) U3b 236 251 135.32681 274.028655 204.6777325 2.311070597 -0.06681 196 87 SH2560 2560 Pro2 tRNA-exon/intron 36 52 26.441084 108.417957 67.4295205 1.828850071 -0.066822 65 65 SH18714 18714 YNL130C_14_381156_379555_INTRON_30_470 intron 21.887181 99.734348 21.887181 78.847167 50.367174 1.702147584 -0.066832 173 78 SH5518 5518 snR32 3' 25.087023 101.949717 63.51837 1.802899345 -0.066833 128 62 SH15044 15044 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.327796 103.238067 22.327796 81.910271 52.1190335 1.716996354 -0.066854 48 40 SH18821 18821 YNL302C_14_62942_61957_INTRON_21_571 intron 2469.726882 5793.745954 2469.726882 3325.019072 2897.372977 3.462004405 -0.066866 120 28 SH5906 5906 snR36 5' - 3 -14 3 26.350484 108.222896 67.28669 1.827929165 -0.066867 32 18 SH8576 8576 snR19 / U1 RNA U1 376 393 23.69309 92.258565 57.9758275 1.763246956 -0.066869 103 84 SH16130 16130 YDR064W_4_579453_580447_INTRON_22_560 intron 21.844153 99.401497 21.844153 78.557344 50.2007485 1.700710193 -0.06691 96 53 SH13675 13675 MT ATP6 3' 27.976126 138.701929 27.976126 111.725803 69.8509645 1.844172407 -0.066926 52 63 SH17673 17673 YKL006C-A_11_430270_429836_INTRON_37_177 3' exon 44.194823 179.907253 44.194823 136.71243 90.4536265 1.956425983 -0.066938 159 100 SH16594 16594 YFL034C-A_6_64931_64242_INTRON_13_333 intron 36.59711 160.807468 36.59711 125.210358 80.903734 1.907968566 -0.06694 90 79 SH8402 8402 snoRNA cluster 5 snR190 22.576025 105.313645 22.576025 83.73762 53.1568225 1.725559013 -0.066941 20 62 SH21457 21457 copy of SH553 22.149328 80.671402 51.410365 1.711050687 -0.06695 8 66 SH15097 15097 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 26.11924 132.410707 26.11924 107.291467 66.7053535 1.82416069 -0.066969 94 21 SH2074 2074 Lys4 tRNA-exon/intron 36 53 24.185125 96.061926 60.1235255 1.779044439 -0.066973 5 98 SH14756 14756 MT ORF11; tRNA Leu; tRNA Gln ORF11 24.338721 120.600539 24.338721 97.261818 60.8002695 1.783905504 -0.066977 45 53 SH8853 8853 LSR1 / U2 RNA U2 906 922 557.862702 887.990155 722.9264285 2.859094102 -0.066977 53 31 SH20072 20072 YCR028C-A spliced 26.292473 108.104603 67.198538 1.827359824 -0.067014 124 49 SH9959 9959 RUF5-1 RUF5-1 601 618 29.438755 114.478405 71.95858 1.857082585 -0.067057 186 43 SH1339 1339 Ile3 tRNA-intron 76 93 23.874225 93.664548 58.7693865 1.769151157 -0.067059 128 76 SH12796 12796 MT COX1 COX1ai1 25.604631 129.239657 25.604631 104.635026 65.1198285 1.813713248 -0.067071 59 12 SH17678 17678 YKL006W_11_431544_432358_INTRON_130_527 intron 25.233126 126.954026 25.233126 102.7209 63.977013 1.80602396 -0.067083 16 98 SH10319 10319 RUF7 RUF7 206 222 31.299441 117.287114 74.2932775 1.870949518 -0.067113 175 79 SH17791 17791 YKL186C_11_93537_92746_INTRON_71_233 intron 25.885412 130.977297 25.885412 106.091885 65.9886485 1.819469234 -0.067125 141 27 SH13268 13268 MT COX1 intronic 25.521831 128.734456 25.521831 104.212625 64.867228 1.812025339 -0.067133 171 4 SH13889 13889 MT COB intronic 22.965059 108.658797 22.965059 86.693738 54.8293985 1.739013482 -0.067136 73 95 SH1357 1357 Ile3 3' flank 24.452054 98.171794 61.311924 1.787544945 -0.067178 94 8 SH14264 14264 MT VAR1 includes 5’ processing site 5' / var1 24.340459 120.636457 24.340459 97.295998 60.8182285 1.784033766 -0.067183 64 40 SH416 416 Asp1 5' flank 23.783506 92.98051 58.382008 1.766279028 -0.067189 94 72 SH3706 3706 Val3 tRNA 11 25 114.527676 243.130301 178.8289885 2.25243792 -0.067203 211 21 SH21782 21782 copy of SH14232 25.130898 102.207189 63.6690435 1.803928326 -0.067233 122 17 SH15619 15619 YBR181C_2_592732_591670_INTRON_7_358 intron 26.567058 134.28456 26.567058 108.717502 67.64228 1.830218238 -0.06726 82 86 SH2886 2886 Pro8 5' flank 24.005972 94.701331 59.3536515 1.773447442 -0.067275 159 103 SH18500 18500 YMR194W_13_651144_651909_INTRON_17_479 intron 26.20795 132.986274 26.20795 107.778324 66.993137 1.826030314 -0.067278 52 91 SH16310 16310 YDR450W_4_1359912_1360787_INTRON_48_482 intron/exon 27.527738 137.319557 27.527738 110.791819 69.1597785 1.839853594 -0.067292 206 103 SH21169 21169 YNL312W spliced 27.94806 111.688941 69.8185005 1.843970517 -0.067309 173 67 SH4223 4223 telomerase RNA telomerase 151 165 56.393457 154.938418 105.6659375 2.023935011 -0.067329 111 90 SH14369 14369 MT ORF9 and ORF10 (hypothetical) intergenic 22.910396 108.205716 22.910396 86.29532 54.602858 1.737215375 -0.067331 21 92 SH1234 1234 Ile1 3' flank 24.246805 96.579218 60.4130115 1.781130485 -0.067342 134 59 SH1036 1036 Gly3 5' flank 21.821574 78.442108 50.131841 1.700113654 -0.067414 173 60 SH13397 13397 MT COX1 intronic 22.21996 102.422802 22.21996 81.202842 51.711401 1.713586304 -0.067427 117 7 SH16314 16314 YDR471W_4_1401759_1402553_INTRON_32_415 exon/intron 25.043719 125.821227 25.043719 101.777508 63.4106135 1.802161955 -0.067461 163 72 SH4470 4470 U3b (snR17b) 5' 24.332362 97.260567 60.7964645 1.783878324 -0.067464 205 54 SH3226 3226 Thr1 5' flank - tRNA2 2 30.800391 116.56834 73.6843655 1.867375348 -0.067531 104 30 SH7989 7989 snoRNA cluster 2 snR57/intergenic 23.368683 112.203194 23.368683 89.834511 56.601597 1.752828685 -0.067535 96 65 SH10337 10337 RUF7 RUF7 296 315 25.083743 101.990228 63.5369855 1.803026606 -0.06755 74 100 SH7648 7648 snoRNA cluster1 5' 22.132406 101.735136 22.132406 80.60273 51.367568 1.710689005 -0.067553 58 103 SH19097 19097 YOR312C_15_901173_900242_INTRON_2_427 intron 23.762929 115.621568 23.762929 92.858639 58.310784 1.765748881 -0.067564 14 9 SH13328 13328 MT COX1 COX1-ai5a 23.322683 111.80411 23.322683 89.481427 56.402055 1.751294928 -0.067573 39 31 SH16715 16715 YGL031C_7_438393_437938_INTRON_1_456 intron 25.463213 128.410336 25.463213 103.947123 64.705168 1.810938969 -0.067586 50 102 SH21065 21065 YMR201C spliced 27.935684 111.679663 69.8076735 1.843903164 -0.067596 179 78 SH20405 20405 YFR031C-A spliced 85.671551 199.29531 142.4834305 2.153764363 -0.067605 89 88 SH16917 16917 YGL251C_7_31636_27921_INTRON_59_210 intron 22.231949 102.535648 22.231949 81.303699 51.767824 1.71405991 -0.067635 56 50 SH16106 16106 YDR064W_4_579453_580447_INTRON_22_560 exon/intron 25.577021 129.115836 25.577021 104.538815 65.057918 1.813300161 -0.067636 20 17 SH20230 20230 YDR139C spliced 29.240544 114.206364 71.723454 1.855661196 -0.067657 151 73 SH4119 4119 SRP RNA SRP RNA 486 498 24.922731 101.172498 63.0476145 1.799668659 -0.067664 208 46 SH2695 2695 Pro4 3' flank 26.657913 108.939718 67.7988155 1.831222106 -0.067688 166 101 SH17521 17521 YJL136C_10_156971_156248_INTRON_25_484 intron 25.290176 127.355407 25.290176 103.065231 64.1777035 1.807384172 -0.067711 121 101 SH16849 16849 YGL183C_7_157071_156547_INTRON_4_86 5' exon 24.171115 119.196917 24.171115 96.025802 60.0984585 1.778863333 -0.067714 11 58 SH19109 19109 YOR312C_15_901173_900242_INTRON_2_427 intron 26.796866 135.039725 26.796866 109.242859 68.0198625 1.83263575 -0.067716 120 95 SH8537 8537 snR19 / U1 RNA U1 181 202 23.863924 93.650519 58.7572215 1.769061251 -0.067738 94 60 SH5003 5003 snR10 snR10 46 60 25.519189 104.249705 64.884447 1.812140608 -0.067753 32 55 SH3648 3648 Val2 5' flank - tRNA1 1 22.686169 84.638673 53.662421 1.729670262 -0.06778 77 39 SH13299 13299 MT COX1 COX1-ai5a 25.624188 129.42259 25.624188 104.798402 65.211295 1.814322825 -0.067829 208 91 SH9460 9460 RUF2 RUF2 141 159 24.446666 98.196031 61.3213485 1.787611697 -0.06784 99 25 SH994 994 Gly2 5' flank 23.848002 93.53807 58.693036 1.768586575 -0.067842 24 39 SH736 736 Gln4 5' flank 25.448397 103.892206 64.6703015 1.810704886 -0.06785 38 50 SH144 144 Arg1 3' flank 24.278868 96.882375 60.5806215 1.782333724 -0.067872 113 49 SH19687 19687 Negative Control 59.089674 159.032954 109.061314 2.037670726 -0.067878 86 5 SH16611 16611 YFL034C-B_6_63992_63015_INTRON_21_134 intron/exon 45.786338 183.959297 45.786338 139.172959 92.4796485 1.96604617 -0.06788 191 32 SH14163 14163 MT COB intronic 22.153773 101.932727 22.153773 80.778954 51.4663635 1.711523483 -0.06789 142 71 SH4598 4598 snR3 5' 115.842951 245.212175 180.527563 2.25654352 -0.067896 127 47 SH19497 19497 YPT1 24.532884 98.882799 61.7078415 1.790340355 -0.067907 135 44 SH5450 5450 snR32 5' 25.718198 105.294485 65.5063415 1.816283345 -0.067949 40 17 SH16770 16770 YGL103W_7_310965_311925_INTRON_50_560 intron 57.143322 212.232921 57.143322 156.089599 106.6164605 2.027824261 -0.067986 138 74 SH8020 8020 snoRNA cluster 2 snR55 199.348202 567.589357 199.348202 369.241155 284.2946785 2.453768731 -0.06799 94 50 SH7925 7925 snoRNA cluster1 snR72 33.160671 152.285037 33.160671 120.124366 76.6425185 1.884469767 -0.068028 156 81 SH6808 6808 snR52 5' 25.275333 103.014871 64.145102 1.8071635 -0.068033 80 41 SH17737 17737 YKL156W_11_158616_159214_INTRON_4_353 intron 25.613071 129.375766 25.613071 104.762695 65.187883 1.814166877 -0.068094 154 49 SH14147 14147 MT COB intronic 22.666415 106.184813 22.666415 84.518398 53.5924065 1.729103259 -0.068102 2 94 SH11340 11340 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3586 3603 22096.19855 22791.19005 22443.6943 4.351094345 -0.068137 149 82 SH1706 1706 Leu6 3' flank 26.533108 108.696223 67.6146655 1.830040904 -0.068172 59 77 SH14381 14381 MT ORF9 and ORF10 (hypothetical) 3' 21.841594 99.482852 21.841594 78.641258 50.241426 1.701061957 -0.06819 16 38 SH20532 20532 YGR148C spliced 28.288339 112.462575 70.375457 1.847421228 -0.068194 81 25 SH21367 21367 Leu1_5 spliced 25.907692 106.297281 66.1024865 1.820217796 -0.068204 87 86 SH4306 4306 telomerase RNA telomerase 566 584 22.092902 80.382564 51.237733 1.709589906 -0.068226 21 14 SH1143 1143 His1 5' flank 23.205768 88.640149 55.9229585 1.747590139 -0.06824 79 17 SH20439 20439 YGL087C spliced 27.937283 111.723705 69.830494 1.844045114 -0.068282 86 80 SH19379 19379 YPR043W_16_654161_654842_INTRON_3_405 intron 25.023882 125.765074 25.023882 101.741192 63.382537 1.801969619 -0.068283 112 84 SH17677 17677 YKL006W_11_431544_432358_INTRON_130_527 exon/intron 27.729175 138.010736 27.729175 111.281561 69.505368 1.842018347 -0.068299 95 30 SH16675 16675 YFR032C-A_6_223758_223245_INTRON_1_331 intron/exon 28.691034 141.009803 28.691034 113.318769 71.0049015 1.851288329 -0.068326 21 32 SH16154 16154 YDR129C_4_715372_713333_INTRON_22_132 5' exon 24.647896 123.46445 24.647896 99.816554 62.232225 1.794015329 -0.068329 96 47 SH19392 19392 YPR043W_16_654161_654842_INTRON_3_405 intron 22.125198 101.74084 22.125198 80.615642 51.37042 1.710713116 -0.068329 157 3 SH6101 6101 snR37 3' 28.879346 113.684992 71.282169 1.852980906 -0.068349 213 84 SH9447 9447 RUF2 RUF2 76 88 80.753326 191.858083 136.3057045 2.134514032 -0.068376 118 99 SH6935 6935 snR58 snR58 36 52 28.791337 113.533418 71.1623775 1.852250449 -0.068396 87 101 SH21201 21201 YOL127W spliced 30.749035 116.54027 73.6446525 1.867141217 -0.068397 80 44 SH3940 3940 RNase MRP RNaseMRP 116 140 21.574406 76.829601 49.2020035 1.691982788 -0.068405 192 76 SH3213 3213 Thr1 5' flank 23.444343 90.506786 56.9755645 1.755688637 -0.068425 7 81 SH14596 14596 MT 21S rRNA Sce1 endonuc 22.961793 108.747943 22.961793 86.78615 54.8739715 1.739366393 -0.068429 180 91 SH12157 12157 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7671 7689 616.503897 970.339309 793.421603 2.899504021 -0.068436 167 9 SH10246 10246 RUF6 3' 24.577563 99.291221 61.934392 1.791931879 -0.068448 58 26 SH18235 18235 YML026C_13_223828_222987_INTRON_48_448 intron 23.707046 115.224476 23.707046 92.51743 58.112238 1.764267601 -0.068475 52 66 SH1956 1956 Lys2 5' flank - tRNA2 2 22.55239 83.695307 53.1238485 1.725289529 -0.068479 84 26 SH7970 7970 snoRNA cluster 2 5'/snR57 27.990609 138.839333 27.990609 111.848724 69.9196665 1.844599348 -0.068479 152 55 SH4858 4858 snR8 snR8 71 87 128.560014 264.285105 196.4225595 2.293191366 -0.068527 9 39 SH12845 12845 MT COX1 COX1ai1 25.608104 129.381516 25.608104 104.773412 65.190758 1.814186031 -0.068537 67 36 SH8107 8107 snoRNA cluster 3; 5' 36.115619 159.679242 36.115619 124.563623 80.339621 1.904929779 -0.068539 170 71 SH4230 4230 telomerase RNA telomerase 186 203 24.054045 95.199456 59.6267505 1.775441142 -0.068566 78 15 SH13116 13116 MT COX1 COX1ai3 21.81386 99.295369 21.81386 78.481509 50.1476845 1.700250885 -0.068581 21 23 SH5019 5019 snR10 snR10 126 143 32.317814 118.888788 75.603301 1.878540758 -0.068583 144 97 SH2211 2211 Phe1 5' flank 27.509349 110.828954 69.1691515 1.839912448 -0.068592 28 39 SH4361 4361 telomerase RNA telomerase 841 853 27.145117 110.047204 68.5961605 1.836299808 -0.068605 185 25 SH20256 20256 YDR381W spliced 23.660859 92.178081 57.91947 1.762824579 -0.068619 84 15 SH18342 18342 YML124C_13_23684_22049_INTRON_26_323 intron 24.857199 124.769454 24.857199 100.912255 62.884727 1.79854518 -0.068622 71 26 SH11146 11146 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2616 2633 26490.81259 26744.04979 26617.43119 4.42516614 -0.068627 95 101 SH145 145 Arg1 3' flank 24.685232 100.031718 62.358475 1.794895486 -0.068635 93 31 SH4691 4691 snR4 5' - 8 8 26.826994 109.361668 68.094331 1.833110957 -0.068639 17 78 SH15779 15779 YDL012C_4_431513_431104_INTRON_46_131 intron/exon 24.541114 122.564155 24.541114 99.023041 61.7820775 1.790862508 -0.068647 163 11 SH20100 20100 YDL029W spliced 31.938847 118.31635 75.1275985 1.875799507 -0.068654 5 81 SH1379 1379 Leu1 5' flank 25.292914 103.155768 64.224341 1.807699657 -0.068655 63 97 SH2056 2056 Lys4 5' flank 22.934969 86.602912 54.7689405 1.73853434 -0.068664 105 84 SH12735 12735 MT COX1 Exon1 21.760951 98.888968 21.760951 78.128017 49.944484 1.698487531 -0.068707 42 51 SH13693 13693 MT ORF 5 (hypothetical) 3' 24.561992 122.756893 24.561992 99.194901 61.8784465 1.791539402 -0.068713 111 23 SH12103 12103 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7401 7418 28.670913 113.300461 70.985687 1.85117079 -0.068724 38 78 SH7949 7949 snoRNA cluster1 3' 35.922272 159.197086 35.922272 124.274814 80.098543 1.903624616 -0.068746 75 103 SH15279 15279 MT 9S rRNA 9S 23.645927 114.724656 23.645927 92.078729 57.862328 1.762395903 -0.068774 177 29 SH1449 1449 Leu2 tRNA 16 28 25.120722 102.281643 63.7011825 1.804147494 -0.068813 67 33 SH13848 13848 MT COB Cytbi2 24.459706 121.857494 24.459706 98.397788 61.428747 1.788371657 -0.068822 182 26 SH20160 20160 YDL130W spliced 25.541872 104.454564 64.998218 1.81290145 -0.068824 82 104 SH2001 2001 Lys3 5' flank 22.928595 86.569911 54.749253 1.738378198 -0.068836 6 25 SH16617 16617 YFL039C_6_54695_53260_INTRON_11_318 intron 26.169057 132.877287 26.169057 107.70823 66.9386435 1.825676907 -0.068841 158 74 SH10452 10452 RUF8 RUF8 186 205 27.768904 111.399188 69.584046 1.842509677 -0.068856 51 14 SH12777 12777 MT COX1 COX1ai1 24.73835 124.060074 24.73835 100.321724 62.530037 1.796088686 -0.068862 195 81 SH11426 11426 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4016 4029 608.464608 959.508716 783.986662 2.894308674 -0.068905 72 37 SH9859 9859 RUF5-1 RUF5-1 101 122 25.265271 103.037615 64.151443 1.80720643 -0.068956 160 68 SH13480 13480 MT COX1 intronic 22.346863 103.56542 22.346863 82.218557 52.28271 1.718358091 -0.06896 52 2 SH4044 4044 SRP RNA SRP RNA 111 128 25.829542 105.957972 65.893757 1.81884427 -0.068996 151 22 SH10516 10516 RUF8 RUF8 506 528 22.470158 83.125942 52.79805 1.722617883 -0.069002 168 42 SH16707 16707 YGL031C_7_438393_437938_INTRON_1_456 intron 33.939994 154.27833 33.939994 121.338336 77.639165 1.890080856 -0.069013 76 65 SH10138 10138 RUF6 RUF6 536 548 26.407402 108.473658 67.44053 1.828920975 -0.069066 177 102 SH16957 16957 YGR029W_7_543547_544199_INTRON_87_169 intron 22.393767 103.957547 22.393767 82.56378 52.4787735 1.719983676 -0.069087 178 93 SH16573 16573 YER179W_5_548416_549512_INTRON_133_224 5' exon 24.380266 121.18448 24.380266 97.804214 61.09224 1.785986049 -0.069139 111 33 SH19863 19863 Negative Control 47.892714 142.411916 95.152315 1.978419359 -0.069186 140 41 SH13929 13929 MT COB Cytbi3 22.130792 101.856284 22.130792 80.725492 51.428142 1.711200834 -0.0692 167 21 SH7853 7853 snoRNA cluster1 intergenic 33.557743 153.342371 33.557743 120.784628 77.1711855 1.887455172 -0.069205 7 64 SH12863 12863 MT COX1 COX1ai1 22.011657 100.911502 22.011657 79.899845 50.955751 1.707193207 -0.069235 102 5 SH16545 16545 YER133W_5_432491_433954_INTRON_178_702 intron 24.846685 124.753542 24.846685 100.906857 62.876771 1.798490231 -0.069235 79 2 SH17756 17756 YKL157W_11_154993_158183_INTRON_282_664 intron 22.775476 107.218149 22.775476 85.442673 54.1090745 1.733270106 -0.069237 17 9 SH874 874 Glu2 3' flank 26.818559 109.379662 68.0991105 1.833141439 -0.069263 53 25 SH15906 15906 YDL083C_4_307788_306925_INTRON_25_456 intron 24.622027 123.354801 24.622027 99.732774 62.1774005 1.793632561 -0.069319 44 11 SH6423 6423 snR45 5' 22.402341 82.649275 52.525808 1.720372742 -0.069337 21 30 SH10006 10006 RUF5-1 3' 24.420763 98.143851 61.282307 1.787335106 -0.069347 89 3 SH18205 18205 YML024W_13_225889_226697_INTRON_4_401 intron 21.853206 99.668692 21.853206 78.815486 50.334346 1.70186443 -0.069377 192 79 SH8822 8822 LSR1 / U2 RNA U2 751 765 23.694776 92.509556 58.102166 1.764192323 -0.069381 46 71 SH780 780 Glu1 5' flank 24.042761 95.191857 59.617309 1.775372369 -0.069385 147 57 SH10121 10121 RUF6 RUF6 451 467 29.105833 114.096557 71.601195 1.854920271 -0.06944 96 49 SH8401 8401 snoRNA cluster 5 snR190 24.179402 119.440647 24.179402 96.261245 60.2203235 1.779743084 -0.069446 52 10 SH16449 16449 YER074W_5_306319_307192_INTRON_4_469 3' exon 29.249029 142.568652 29.249029 114.319623 71.784326 1.856029627 -0.06947 124 91 SH13434 13434 MT COX1 intronic 21.248158 94.966477 21.248158 74.718319 47.9832385 1.681089556 -0.069543 93 53 SH17926 17926 YLR078C_12_286560_285737_INTRON_4_92 intron 25.990701 131.832432 25.990701 106.841731 66.416216 1.822274128 -0.069562 128 31 SH15596 15596 YBR089C-A_2_426588_426148_INTRON_1_114 intron 25.110112 126.398554 25.110112 102.288442 63.699277 1.804134503 -0.069579 60 12 SH14966 14966 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' / cox2 23.035367 109.489558 23.035367 87.454191 55.244779 1.742291241 -0.069586 5 3 SH10498 10498 RUF8 RUF8 416 435 22.588616 84.067952 53.328284 1.726957609 -0.069628 204 68 SH15617 15617 YBR181C_2_592732_591670_INTRON_7_358 intron 25.25673 127.304635 25.25673 103.047905 64.1523175 1.80721235 -0.069628 111 13 SH10971 10971 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1741 1759 926.18702 1392.045558 1159.116289 3.064127009 -0.069633 108 39 SH10434 10434 RUF8 RUF8 96 115 23.565841 91.549215 57.557528 1.760102133 -0.069634 189 101 SH2131 2131 Met1 tRNA 41 56 8043.14035 9382.171081 8712.655716 3.940150553 -0.069675 87 79 SH2582 2582 Pro2 3' flank 21.404844 75.777377 48.5911105 1.686556825 -0.069683 79 96 SH4502 4502 U3b (snR17b) U3b 66 83 23.987671 94.796058 59.3918645 1.773726959 -0.069707 96 99 SH3054 3054 Ser3 5' flank 31.047051 117.060024 74.0535375 1.869545809 -0.06972 113 24 SH10610 10610 RUF8 3' 22.772434 85.4646 54.118517 1.733345887 -0.06974 197 23 SH12133 12133 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7551 7564 27.046451 109.900788 68.4736195 1.835523285 -0.069744 113 104 SH15030 15030 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.807404 116.221281 23.807404 93.413877 58.6106405 1.767976467 -0.069803 37 89 SH18089 18089 YLR367W_12_855877_857316_INTRON_698_1180 5' exon 24.511678 122.419718 24.511678 98.90804 61.709859 1.790354554 -0.069808 171 98 SH11878 11878 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6276 6292 104.488057 228.33772 166.4128885 2.221186959 -0.069813 123 21 SH17287 17287 YHR141C_8_382752_381991_INTRON_5_445 intron 26.342845 133.71886 26.342845 108.376015 67.35943 1.828398403 -0.069821 73 20 SH12887 12887 MT COX1 COX1ai1 25.11443 126.448299 25.11443 102.333869 63.7241495 1.804304048 -0.069868 11 36 SH11168 11168 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2726 2743 41.274429 132.52498 86.8997045 1.9390183 -0.069904 50 32 SH11006 11006 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1916 1932 5536.22563 6760.926413 6148.576022 3.788774547 -0.069904 20 91 SH2275 2275 Phe2 5' flank 24.125375 95.887371 60.006373 1.778197377 -0.069927 163 40 SH20772 20772 YKL002W spliced 28.387874 112.776886 70.58238 1.848696298 -0.069934 25 65 SH3922 3922 RNase MRP RNaseMRP 26 44 26.621732 108.991147 67.8064395 1.83127094 -0.069937 210 40 SH7422 7422 snR69 snR69 11 25 64.769932 167.761165 116.2655485 2.065451045 -0.070019 7 25 SH19824 19824 Negative Control 26.133005 107.62172 66.8773625 1.825279137 -0.070037 81 43 SH19672 19672 SIR1 2.4 23.566403 91.591724 57.5790635 1.760264597 -0.070041 29 55 SH56 56 Ala2 5' flank 24.686797 100.150341 62.418569 1.795313808 -0.070044 162 40 SH9502 9502 RUF2 3' 24.299923 97.264104 60.7820135 1.783775083 -0.070048 33 100 SH1761 1761 Leu7 3' flank 22.347261 82.311772 52.3295165 1.718746722 -0.070049 2 63 SH7991 7991 snoRNA cluster 2 intergenic 22.313103 103.3847 22.313103 82.071597 52.19235 1.717606852 -0.070051 127 30 SH15826 15826 YDL064W_4_337486_338069_INTRON_39_148 intron/exon 232.183599 649.44287 232.183599 418.259271 325.221435 2.512179162 -0.070126 157 89 SH8125 8125 snoRNA cluster 3; snR41 25.493917 128.808062 25.493917 104.314145 64.904031 1.81227167 -0.070137 146 60 SH7077 7077 snR62 3' 27.093948 110.02699 68.560469 1.83607378 -0.070149 134 53 SH18229 18229 YML026C_13_223828_222987_INTRON_48_448 intron 27.973337 138.885312 27.973337 111.911975 69.942656 1.84474212 -0.070162 162 85 SH1768 1768 Leu7 3' flank 24.794046 100.711764 62.752905 1.797633835 -0.070185 205 76 SH14574 14574 MT 21S rRNA intronic 27.933711 138.764088 27.933711 111.830377 69.882044 1.844365599 -0.070208 57 59 SH7589 7589 snR189 snR189 16 30 31.717509 118.080248 74.8988785 1.874475315 -0.070211 132 3 SH4383 4383 telomerase RNA telomerase 951 968 39.011385 129.093345 84.052365 1.924549938 -0.07025 142 68 SH9915 9915 RUF5-1 RUF5-1 381 402 22.241567 81.58905 51.9153085 1.715295439 -0.070289 60 38 SH18391 18391 YMR116C_13_500687_499455_INTRON_538_810 intron/exon 30.668556 146.194898 30.668556 116.526342 73.597449 1.866862761 -0.070291 170 5 SH704 704 Gln3 tRNA 51 63 52.20466 148.936834 100.570747 2.002471676 -0.070307 37 46 SH8102 8102 snoRNA cluster 3; 5' 184.787912 531.996082 184.787912 348.20817 266.498041 2.425694021 -0.07031 96 56 SH19984 19984 YBL091C-A spliced 25.633846 105.052847 65.3433465 1.815201373 -0.070313 151 104 SH2163 2163 Met2 5' flank 24.91782 101.35798 63.1379 1.800290133 -0.070315 3 71 SH6727 6727 snR49 161-165 + 3' 161 22.397123 82.696575 52.546849 1.720546678 -0.070334 153 50 SH21210 21210 YOR096W spliced 24.705425 100.269668 62.4875465 1.795793473 -0.070346 184 43 SH18198 18198 YML024W_13_225889_226697_INTRON_4_401 intron 25.886676 131.253999 25.886676 106.367323 66.1269995 1.820378817 -0.070351 45 10 SH20605 20605 YHR077C spliced 65.014373 168.163666 116.5890195 2.06665765 -0.070366 117 53 SH21263 21263 YPL079W spliced 31.374558 117.587194 74.480876 1.872044776 -0.070439 88 47 SH21130 21130 YNL130C spliced 27.628567 111.194881 69.411724 1.841432831 -0.070471 82 72 SH12892 12892 MT COX1 COX1ai1 26.05689 132.321732 26.05689 107.264842 66.660866 1.823870951 -0.070503 198 82 SH16614 16614 YFL039C_6_54695_53260_INTRON_11_318 5' exon 24.008836 118.046838 24.008836 95.038002 59.523419 1.774687869 -0.070506 28 77 SH6569 6569 snR47 5' 27.536227 110.99982 69.2680235 1.840532796 -0.070517 212 91 SH17999 17999 YLR287C-A_12_713158_712537_INTRON_4_433 intron 26.640488 134.708241 26.640488 109.067753 67.8541205 1.831576226 -0.070555 118 83 SH5183 5183 snR13 snR13 71 87 75.181303 183.599202 129.3902525 2.11190156 -0.070567 2 66 SH19159 19159 YPL075W_16_412249_415357_INTRON_9_759 intron 23.92476 117.317882 23.92476 94.393122 59.158941 1.772020391 -0.070572 194 72 SH18629 18629 YNL096C_14_444312_443395_INTRON_145_489 intron 25.732748 130.320219 25.732748 105.587471 65.6601095 1.817301603 -0.070579 171 62 SH14630 14630 MT 21S rRNA Sce1 endonuc 22.133663 101.993574 22.133663 80.859911 51.496787 1.711780133 -0.070603 211 16 SH925 925 Glu3 3' flank 23.910273 94.284387 59.09733 1.77156786 -0.070606 99 44 SH8663 8663 LSR1 / U2 RNA 5' 22.111233 80.704325 51.407779 1.711028841 -0.070615 133 83 SH1295 1295 Ile2 3' flank 23.675579 92.480527 58.078053 1.764012049 -0.070623 184 22 SH13014 13014 MT COX1 COX1ai2 25.508517 128.940009 25.508517 104.431492 64.9700045 1.812712897 -0.070647 165 69 SH21767 21767 copy of SH13602 22.158884 81.041626 51.600255 1.712651848 -0.070671 31 63 SH20490 20490 YGL232W spliced 22.936419 86.797793 54.867106 1.739312054 -0.070691 101 38 SH19131 19131 YPL075W_16_412249_415357_INTRON_9_759 intron 23.720489 115.552953 23.720489 92.832464 58.2764765 1.765493286 -0.070705 147 24 SH16809 16809 YGL137W_7_249872_252741_INTRON_19_218 3' exon 25.106886 126.471318 25.106886 102.364432 63.735659 1.804382481 -0.070732 90 76 SH2811 2811 Pro6 3' flank 20.878469 72.392067 46.635268 1.668714477 -0.070745 198 64 SH1912 1912 Lys1 tRNA 16 28 28.21536 112.461569 70.3384645 1.847192883 -0.070764 143 83 SH18422 18422 YMR133W_13_536206_537608_INTRON_1243_1358 intron/exon 43.287146 177.883173 43.287146 135.596027 89.4415865 1.951539494 -0.070767 207 102 SH10150 10150 RUF6 RUF6 596 618 23.943083 94.556318 59.2497005 1.772686159 -0.070793 116 82 SH4977 4977 snR10 5' 24.468026 98.667465 61.5677455 1.789353251 -0.07084 98 80 SH17047 17047 YGR214W_7_920570_921783_INTRON_91_545 intron 33.925329 154.350961 33.925329 121.425632 77.6754805 1.890283948 -0.070846 81 78 SH1281 1281 Ile2 tRNA 101 113 27.838297 111.665122 69.7517095 1.843554856 -0.070848 130 16 SH1714 1714 Leu6 3' flank 21.713174 77.969963 49.8415685 1.697591701 -0.070863 91 99 SH5700 5700 snR34 snR34 421 438 23.877794 94.060989 58.9693915 1.770626646 -0.070891 52 11 SH21883 21883 copy of SH18403 29.154929 114.253576 71.7042525 1.855544913 -0.070907 210 9 SH12126 12126 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7516 7531 95.771301 215.142018 155.4566595 2.191609331 -0.070907 211 53 SH364 364 Asn1 5' flank 23.889522 94.153812 59.021667 1.771011471 -0.070914 173 70 SH18546 18546 YMR230W_13_732413_733140_INTRON_53_462 intron 23.988944 117.913556 23.988944 94.924612 59.456778 1.774201371 -0.070926 70 99 SH7564 7564 snR79 3' 23.686492 92.593943 58.1402175 1.764476652 -0.070938 46 47 SH11122 11122 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2496 2511 24.737553 100.482468 62.6100105 1.796643777 -0.070955 108 54 SH19023 19023 YOR182C_15_678792_678190_INTRON_4_414 intron 23.56748 114.25434 23.56748 91.68686 57.62717 1.760627292 -0.070966 151 90 SH1661 1661 Leu5 3' flank 29.803484 115.256006 72.529745 1.860516151 -0.070998 209 27 SH4258 4258 telomerase RNA telomerase 326 343 26.922491 109.706289 68.31439 1.834512195 -0.071007 180 90 SH12351 12351 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.421292 134.038937 26.421292 108.617645 67.5194685 1.829429015 -0.071039 135 80 SH11731 11731 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5541 5558 19304.56602 20275.71203 19790.13903 4.296448845 -0.071042 32 43 SH3394 3394 Thr4 tRNA 56 70 44.912231 138.089678 91.5009545 1.961425624 -0.071054 83 85 SH2523 2523 Pro1 3' flank 73.33735 180.8559 127.096625 2.104134018 -0.071059 102 16 SH16906 16906 YGL232W_7_62074_63001_INTRON_58_115 exon/intron 44.947898 182.093254 44.947898 138.145356 91.546627 1.961642348 -0.071081 44 7 SH14719 14719 MT tRNA cys; tRNA his tRNA Cys 22.915407 108.588779 22.915407 86.673372 54.7943895 1.738736093 -0.071088 165 93 SH13209 13209 MT COX1 COX1-ai4 23.818841 116.44557 23.818841 93.626729 58.722785 1.768806644 -0.071103 83 25 SH11366 11366 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3716 3733 19433.56103 20395.90254 19914.73178 4.299174462 -0.07112 126 99 SH5300 5300 snR30 snR30 351 367 83.25417 195.990606 139.622388 2.144955062 -0.071122 94 44 SH20184 20184 YDL191W spliced 25.893506 106.468573 66.1810395 1.820733584 -0.071139 8 49 SH13956 13956 MT COB Cytbi3 27.985351 138.982313 27.985351 111.996962 69.9911565 1.84504317 -0.071162 54 44 SH9131 9131 snR7 U5 RNA 5' 22.046931 80.300831 51.173881 1.709048355 -0.071164 100 40 SH12874 12874 MT COX1 COX1ai1 23.836246 116.60449 23.836246 93.768244 58.802245 1.769393907 -0.07118 61 12 SH4875 4875 snR8 snR8 156 168 27.111337 110.125584 68.6184605 1.83644097 -0.071193 77 7 SH2371 2371 Phe4 5' flank 23.091766 88.040947 55.5663565 1.744811921 -0.071259 80 82 SH19927 19927 YBL018C spliced 24.147421 96.191981 60.169701 1.779377853 -0.071273 155 9 SH15708 15708 YBR220C_2_663261_662457_INTRON_302_722 intron 25.061368 126.234942 25.061368 102.173574 63.617471 1.803576401 -0.071277 26 94 SH21101 21101 YNL050C spliced 22.63607 84.572058 53.604064 1.729197717 -0.071294 2 26 SH16884 16884 YGL189C_7_148970_148233_INTRON_1_368 intron 23.800708 116.307258 23.800708 93.50655 58.653629 1.768294888 -0.071306 53 36 SH9944 9944 RUF5-1 RUF5-1 526 538 26.1219 107.672617 66.8972585 1.82540832 -0.071325 178 80 SH5996 5996 snR36 3' 24.701287 100.32558 62.5134335 1.795973353 -0.071327 58 98 SH3538 3538 Tyr2 5' flank 24.270453 97.160627 60.71554 1.783299862 -0.071329 47 73 SH1435 1435 Leu2 5' flank 25.742411 105.70168 65.7220455 1.817711072 -0.071352 15 9 SH9006 9006 snR17a / U3a U3a 316 328 25.572687 104.822293 65.19749 1.814230876 -0.071361 57 5 SH4777 4777 snR5 snR5 56 73 25.658507 105.269334 65.4639205 1.816002011 -0.071388 200 39 SH10341 10341 RUF7 RUF7 316 337 24.461332 98.671007 61.5661695 1.789342134 -0.071397 70 88 SH2528 2528 Pro1 3' flank 26.462613 108.730501 67.596557 1.829924576 -0.07143 74 30 SH2178 2178 Met2 tRNA 21 33 27.459477 110.891772 69.1756245 1.839953089 -0.071477 82 31 SH1788 1788 Leu8 5' flank 23.948548 94.665065 59.3068065 1.773104539 -0.071477 108 48 SH9593 9593 RUF3 RUF3 351 366 27.824025 111.672304 69.7481645 1.843532783 -0.071483 214 45 SH20750 20750 YJR021C spliced 29.05667 114.133379 71.5950245 1.854882842 -0.071489 120 51 SH7292 7292 snR66 5' 21.801316 78.626267 50.2137915 1.700823015 -0.071497 42 6 SH17102 17102 YHL001W_8_104270_105084_INTRON_130_527 intron 22.948944 108.915899 22.948944 86.966955 54.9579495 1.740030521 -0.071498 187 97 SH13495 13495 MT COX1 intronic 40.524146 171.022291 40.524146 131.498145 86.0111455 1.934554732 -0.071503 98 35 SH9599 9599 RUF3 RUF3 381 400 27.89709 111.831843 69.8644665 1.844256347 -0.071546 155 72 SH17266 17266 YHR123W_8_354817_356083_INTRON_51_141 5' exon 24.747354 124.327745 24.747354 100.580391 62.6638725 1.79701723 -0.071558 104 88 SH21175 21175 YNR053C spliced 25.088351 102.337101 63.712726 1.804226187 -0.071581 133 13 SH16634 16634 YFR024C-A_6_203420_201947_INTRON_48_165 5' exon 24.131409 119.23215 24.131409 96.100741 60.116075 1.778990618 -0.071616 140 79 SH16670 16670 YFR032C-A_6_223758_223245_INTRON_1_331 intron 24.571735 123.143726 24.571735 99.571991 62.071863 1.79289478 -0.071653 104 31 SH20879 20879 YLR211C spliced 261.609002 462.45501 362.032006 2.558746967 -0.071684 6 65 SH15430 15430 YBL072C_2_89435_88518_INTRON_1_308 intron 34.070977 154.762471 34.070977 121.691494 77.8812355 1.891432833 -0.071707 75 19 SH18819 18819 YNL302C_14_62942_61957_INTRON_21_571 intron 25.493121 128.932024 25.493121 104.438903 64.966012 1.812686208 -0.07171 95 83 SH15154 15154 MT tRNA Thr1 reverse complement 3' 20.758929 91.446916 20.758929 71.687987 46.223458 1.664862432 -0.071715 27 29 SH16615 16615 YFL039C_6_54695_53260_INTRON_11_318 exon/intron 22.566963 105.655955 22.566963 84.088992 53.3279775 1.726955113 -0.071718 170 14 SH21833 21833 copy of SH16333 24.134556 96.135704 60.13513 1.779128254 -0.071721 164 4 SH20188 20188 YDL219W spliced 22.581966 84.203087 53.3925265 1.727480472 -0.071731 27 103 SH17974 17974 YLR211C_12_564531_563792_INTRON_19_77 5' exon 24.481957 122.350095 24.481957 98.868138 61.6750475 1.790109493 -0.071732 59 10 SH9081 9081 snR14 / U4 RNA U4 21 35 44.680414 137.788089 91.2342515 1.960157913 -0.071735 100 20 SH7546 7546 snR79 71-84 +3' 71 23.626355 92.210993 57.918674 1.76281861 -0.071755 32 103 SH14345 14345 MT VAR1 includes 5’ processing site 3' 26.412236 134.051621 26.412236 108.639385 67.5258105 1.829469806 -0.071759 162 101 SH3233 3233 Thr1 tRNA 21 33 25.700761 105.519286 65.6100235 1.816970193 -0.07176 109 46 SH16630 16630 YFL039C_6_54695_53260_INTRON_11_318 intron/exon 23.712701 115.586992 23.712701 92.874291 58.293496 1.765620102 -0.071771 192 10 SH17891 17891 YLR048W_12_242233_243350_INTRON_91_449 intron 30.873758 146.792477 30.873758 116.918719 73.8962385 1.868622332 -0.071795 4 7 SH17096 17096 YHL001W_8_104270_105084_INTRON_130_527 intron 24.583415 123.263748 24.583415 99.680333 62.131874 1.793314453 -0.071805 75 59 SH17282 17282 YHR141C_8_382752_381991_INTRON_5_445 intron 27.288331 136.831763 27.288331 110.543432 68.9158815 1.838319316 -0.071811 94 45 SH15298 15298 MT 9S rRNA 3' 21.923243 100.418702 21.923243 79.495459 50.709351 1.705088052 -0.07183 142 55 SH9951 9951 RUF5-1 RUF5-1 561 578 24.650292 100.106056 62.378174 1.795032657 -0.071864 101 30 SH6481 6481 snR45 3' 23.685722 92.676725 58.1812235 1.76478285 -0.071871 191 52 SH7415 7415 snR69 5' 25.935143 106.746965 66.341054 1.821782367 -0.071879 186 70 SH20461 20461 YGL183C spliced 25.58682 104.941113 65.2639665 1.814673465 -0.071915 177 11 SH12959 12959 MT COX1 COX1ai2 25.152196 126.847113 25.152196 102.694917 63.9235565 1.80566093 -0.071936 27 98 SH12289 12289 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.500988 122.541638 24.500988 99.04065 61.770819 1.79078336 -0.071947 88 43 SH6882 6882 snR56 snR56 41 58 21.70789 78.019387 49.8636385 1.697783965 -0.071952 156 9 SH20744 20744 YJL205C-A spliced 22.937914 86.92531 54.931612 1.739822344 -0.071968 181 64 SH7996 7996 snoRNA cluster 2 intergenic 28.03794 139.195595 28.03794 112.157655 70.0977975 1.845704372 -0.071983 98 40 SH2647 2647 Pro4 5' flank 25.824112 106.181578 66.002845 1.819562656 -0.072021 51 3 SH4465 4465 telomerase RNA 3' 27.923225 111.915853 69.919539 1.844598556 -0.072023 92 74 SH13719 13719 MT tRNAGlu (and 5' processing site for COB) 3' 23.979201 117.936254 23.979201 94.957053 59.468127 1.77428426 -0.072035 64 95 SH9060 9060 snR14 / U4 RNA 5' 23.275042 89.531354 56.403198 1.751303729 -0.072051 103 57 SH18146 18146 YLR406C_12_931752_931062_INTRON_58_406 intron 29.462718 143.254991 29.462718 114.792273 72.1274955 1.858100852 -0.072055 158 78 SH2195 2195 Met2 3' flank 24.892157 101.36675 63.1294535 1.80023203 -0.072086 88 73 SH6956 6956 snR58 3' 20.897166 72.612735 46.7549505 1.669827602 -0.072122 55 84 SH20845 20845 YLR048W spliced 26.33411 108.489981 67.4120455 1.828737505 -0.072133 5 20 SH4000 4000 RNase MRP 3' 25.891726 106.544628 66.218177 1.82097722 -0.072159 140 43 SH272 272 Arg4 5' flank 23.095169 88.151228 55.6231985 1.745255958 -0.072172 202 8 SH9842 9842 RUF5-1 RUF5-1 16 37 25.178427 102.849862 64.0141445 1.806275946 -0.072178 44 91 SH7293 7293 snR66 5' 26.856933 109.63262 68.2447765 1.834069416 -0.072183 133 7 SH5506 5506 snR32 3' 21.609207 77.36111 49.4851585 1.694474966 -0.072185 104 72 SH19322 19322 YPL218W_16_138697_139408_INTRON_29_167 5' exon 24.244642 120.289652 24.244642 97.04501 60.644826 1.782793754 -0.072202 132 61 SH12961 12961 MT COX1 COX1ai2 25.22308 127.306332 25.22308 103.083252 64.153166 1.807218094 -0.072213 78 66 SH6159 6159 snR39B 3' 22.695564 85.103529 53.8995465 1.731585111 -0.072217 126 41 SH1243 1243 Ile2 5' flank 24.63051 100.032497 62.3315035 1.794707603 -0.07222 103 6 SH18949 18949 YOL127W_15_80347_81189_INTRON_14_427 intron 29.000576 142.088644 29.000576 114.088068 71.544322 1.854575172 -0.072246 67 16 SH9184 9184 snR7 U5 RNA U5 191 208 23.253469 89.383515 56.318492 1.750651017 -0.072261 30 97 SH15086 15086 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.518409 105.291148 22.518409 83.772739 53.145574 1.725467102 -0.072272 126 11 SH6611 6611 snR47 3' 22.180366 81.324398 51.752382 1.713930344 -0.072288 187 57 SH6564 6564 snR47 5' 26.990128 109.927913 68.4590205 1.835430681 -0.072296 145 18 SH3441 3441 Trp1 tRNA 36 55 24.809474 100.959801 62.8846375 1.798544562 -0.072318 120 87 SH18909 18909 YOL120C_15_94401_93394_INTRON_113_559 intron 25.926138 131.665223 25.926138 106.739085 66.3326115 1.821727096 -0.072344 58 38 SH12618 12618 MT_15S MT_15S 29.079156 142.297235 29.079156 114.218079 71.6486175 1.855207815 -0.072391 128 66 SH9323 9323 RUF1 RUF1 191 212 21.917112 79.498917 50.7080145 1.705076606 -0.072403 133 44 SH15315 15315 YAL003W_1_142172_143158_INTRON_81_446 intron 21.565317 97.644051 21.565317 77.078734 49.3220255 1.693040903 -0.072412 134 17 SH13303 13303 MT COX1 COX1-ai5a 22.221079 102.842372 22.221079 81.621293 51.921186 1.715344604 -0.072426 7 11 SH20829 20829 YKR094C spliced 22.771254 85.696606 54.23393 1.734271076 -0.072431 143 101 SH2485 2485 Pro1 5' flank 27.101534 110.176786 68.63916 1.83657196 -0.072431 85 12 SH4019 4019 SRP RNA 5' - 5 5 21.832204 78.914599 50.3734015 1.702201278 -0.072443 130 65 SH20457 20457 YGL178W spliced 22.444384 83.234607 52.8394955 1.722958662 -0.072465 102 28 SH10456 10456 RUF8 RUF8 206 223 23.511237 91.401424 57.4563305 1.759337886 -0.072492 201 69 SH6623 6623 snR48 5' 24.988725 101.896514 63.4426195 1.802381106 -0.072492 103 58 SH17223 17223 YHR041C_8_189855_189122_INTRON_15_115 intron/exon 23.423028 113.149288 23.423028 90.72626 57.074644 1.756443211 -0.072495 97 40 SH1634 1634 Leu5 tRNA-exon/intron 36 54 25.827466 106.239217 66.0333415 1.819763275 -0.072504 37 77 SH3421 3421 Trp1 5' flank 25.419019 104.120419 64.769719 1.811372013 -0.072507 64 39 SH15581 15581 YBR084C-A_2_415219_414144_INTRON_3_508 intron 51.533251 198.645282 51.533251 148.112031 99.822641 1.999229056 -0.072537 152 92 SH947 947 Gly1 5' flank - tRNA2 2 23.379105 90.389887 56.884496 1.754993915 -0.072566 178 70 SH10249 10249 RUF6 3' 24.01019 95.250208 59.630199 1.775466259 -0.072572 39 59 SH18704 18704 YNL130C_14_381156_379555_INTRON_30_470 intron 24.287825 120.709111 24.287825 97.421286 60.8545555 1.784293095 -0.072574 31 34 SH13154 13154 MT COX1 intronic 22.882725 108.442843 22.882725 86.560118 54.7214215 1.738157371 -0.072592 114 58 SH6288 6288 snR42 snR42 221 237 24.34438 97.868652 61.106516 1.786087523 -0.072596 117 76 SH12235 12235 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.197416 119.914737 24.197416 96.717321 60.4573685 1.78144924 -0.07263 112 72 SH6049 6049 snR37 snR37 161 183 23.354644 90.205198 56.779921 1.754194784 -0.072631 165 70 SH10107 10107 RUF6 RUF6 381 398 24.202114 96.755705 60.4789095 1.781603952 -0.072646 208 71 SH1253 1253 Ile2 5' flank 24.620848 100.017154 62.319001 1.794620483 -0.072657 103 22 SH8515 8515 snR19 / U1 RNA U1 71 93 21.267074 75.075695 48.1713845 1.682789129 -0.072667 193 83 SH1627 1627 Leu5 tRNA 1 13 547.507452 876.762429 712.1349405 2.852562295 -0.072667 36 23 SH16195 16195 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 24.856546 125.088406 24.856546 101.23186 63.044203 1.799645159 -0.072695 24 77 SH17083 17083 YHL001W_8_104270_105084_INTRON_130_527 exon/intron 33.221237 152.713073 33.221237 120.491836 76.8565365 1.885680809 -0.072733 72 55 SH5257 5257 snR30 snR30 136 148 25.303622 103.543564 64.423593 1.809044942 -0.072756 140 97 SH8436 8436 snoRNA cluster 5 intergenic/snR128 22.755864 107.366277 22.755864 85.610413 54.1831385 1.733864157 -0.072773 164 39 SH2750 2750 Pro5 3' flank 24.328602 97.762695 61.0456485 1.785654712 -0.072779 92 89 SH20596 20596 YHR039C-A spliced 26.168595 108.040235 67.104415 1.826751095 -0.072792 167 36 SH2901 2901 Pro8 tRNA 26 38 22.586311 84.329305 53.457808 1.728011147 -0.072792 206 60 SH20250 20250 YDR381C-A spliced 24.221155 96.920571 60.570863 1.782263761 -0.072803 149 68 SH15388 15388 YBL040C_2_142830_142074_INTRON_23_119 exon/intron 24.741366 124.389799 24.741366 100.648433 62.6948995 1.797232211 -0.07281 37 74 SH10310 10310 RUF7 RUF7 161 177 25.400407 104.05048 64.7254435 1.811075035 -0.072831 117 17 SH17605 17605 YJL205C-A_10_50443_50139_INTRON_33_175 intron 23.703909 115.613589 23.703909 92.90968 58.3067945 1.765719166 -0.072851 85 22 SH4183 4183 telomerase RNA 5' 23.879247 94.264644 59.0719455 1.771381274 -0.072883 114 51 SH9491 9491 RUF2 3' 26.328165 108.52029 67.4242275 1.828815979 -0.072886 25 59 SH9833 9833 RUF5-1 5' 275.856345 484.051613 379.953979 2.579730997 -0.072889 103 25 SH10472 10472 RUF8 RUF8 286 302 25.213006 103.087241 64.1501235 1.807197497 -0.072906 181 6 SH1860 1860 Leu9 tRNA-intron/exon 41 60 23.869867 94.197314 59.0335905 1.771099198 -0.072937 109 59 SH13146 13146 MT COX1 intronic 23.159402 110.877515 23.159402 88.718113 55.9387575 1.747712816 -0.07294 51 23 SH8001 8001 snoRNA cluster 2 intergenic 24.944252 125.647791 24.944252 101.703539 63.3238955 1.801567624 -0.072945 60 77 SH22 22 Ala1 tRNA 6 18 136.373066 276.61816 206.495613 2.31491083 -0.072967 164 56 SH18599 18599 YNL069C_14_494998_493953_INTRON_29_477 intron 26.534206 134.50994 26.534206 108.975734 67.75497 1.830941157 -0.072969 59 7 SH20270 20270 YDR424C spliced 25.567794 104.930053 65.2489235 1.814573351 -0.072978 177 63 SH21328 21328 YPR043W spliced 169.05435 325.352941 247.2036455 2.393054871 -0.07299 89 80 SH14943 14943 MT tRNA Met 5' 22.424854 104.561859 22.424854 83.137005 52.7809295 1.722477034 -0.073024 110 74 SH1050 1050 Gly3 5' flank - tRNA3 3 25.512458 104.647641 65.0800495 1.813447875 -0.073034 19 64 SH4249 4249 telomerase RNA telomerase 281 302 22.329137 82.432143 52.38064 1.7191708 -0.073035 54 30 SH4924 4924 snR9 snR9 26 44 24.150025 96.386718 60.2683715 1.780089457 -0.073038 161 104 SH1014 1014 Gly2 61-72 + 3' flank 61 73 25.765534 105.962709 65.8641215 1.818648904 -0.07305 174 13 SH15078 15078 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.536426 105.513213 22.536426 83.976787 53.2566065 1.72637349 -0.073054 109 67 SH2687 2687 Pro4 101-102 + 3' flank 101 22.464496 83.438623 52.9515595 1.723878755 -0.073077 53 53 SH15967 15967 YDL130W_4_229906_230527_INTRON_115_415 intron 23.903181 117.373171 23.903181 94.46999 59.1865855 1.772223286 -0.07309 72 45 SH724 724 Gln3 3' flank 25.548845 104.842578 65.1957115 1.814219029 -0.07311 9 33 SH17830 17830 YKR094C_11_618384_617630_INTRON_9_376 exon/intron 25.61475 129.801494 25.61475 105.186744 65.400747 1.815582709 -0.073137 176 88 SH4803 4803 snR5 snR5 186 203 24.112916 96.108269 60.1105925 1.778951009 -0.073157 40 15 SH14379 14379 MT ORF9 and ORF10 (hypothetical) ORF10 23.21145 111.353229 23.21145 89.141779 56.1766145 1.749555563 -0.073162 94 76 SH8640 8640 snR19 / U1 RNA 3' 20.977895 73.222231 47.100063 1.673021488 -0.073276 61 80 SH5995 5995 snR36 3' 23.863333 94.182975 59.023154 1.771022413 -0.073312 102 3 SH6094 6094 snR37 386 + 3' 386 22.737216 85.517947 54.1275815 1.733418623 -0.073322 187 71 SH5156 5156 snR13 5' 25.499916 104.606578 65.053247 1.813268978 -0.073326 199 86 SH17154 17154 YHR012W_8_129473_130440_INTRON_49_167 intron 24.451652 122.24174 24.451652 98.790088 61.62087 1.789727826 -0.073329 77 16 SH3491 3491 Tyr1 5' flank - tRNA10 10 31.725948 118.270919 74.9984335 1.875052192 -0.07333 153 38 SH4781 4781 snR5 snR5 76 90 73.982662 182.059155 128.0209085 2.107280905 -0.073331 65 84 SH19535 19535 CBP1 1.2 22.165625 81.306936 51.7362805 1.713795203 -0.073334 5 85 SH7141 7141 snR63 snR63 211 223 44.971537 138.344006 91.6577715 1.962169294 -0.073363 11 80 SH4434 4434 telomerase RNA telomerase 1206 1220 24.739936 100.684881 62.7124085 1.79735348 -0.073364 82 97 SH21438 21438 TH298 - control oligo; WTP_220 32.790235 119.88478 76.3375075 1.882737976 -0.073409 194 86 SH20874 20874 YLR185W spliced 97.746516 218.494012 158.120264 2.198987531 -0.07341 52 28 SH16114 16114 YDR064W_4_579453_580447_INTRON_22_560 intron 22.482216 105.084631 22.482216 83.602415 53.0423155 1.724622474 -0.07343 212 41 SH11831 11831 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6041 6054 46224.8172 43783.58655 45004.20187 4.653253064 -0.073433 108 63 SH15288 15288 MT 9S rRNA 9S 22.885814 108.547424 22.885814 86.66161 54.773712 1.738572174 -0.073452 214 26 SH5658 5658 snR34 snR34 211 227 30.133759 115.897764 73.0157615 1.863416619 -0.073478 111 48 SH14765 14765 MT ORF11; tRNA Leu; tRNA Gln ORF11 21.253694 95.302452 21.253694 75.048758 48.151226 1.682607349 -0.073489 183 29 SH14300 14300 MT VAR1 includes 5’ processing site VAR1 23.768189 116.234812 23.768189 93.466623 58.617406 1.768026596 -0.073503 72 47 SH6476 6476 snR45 3' 23.594086 92.129496 57.861791 1.762391872 -0.073505 13 36 SH17807 17807 YKR057W_11_551293_551878_INTRON_25_346 5' exon 39.847365 169.44634 39.847365 130.598975 85.22317 1.930557684 -0.073521 101 59 SH10667 10667 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 221 239 28.146862 112.481225 70.3140435 1.847042073 -0.073527 57 77 SH6100 6100 snR37 3' 23.939866 94.797154 59.36851 1.773556149 -0.073529 186 53 SH13942 13942 MT COB Cytbi3 23.107089 110.476339 23.107089 88.36925 55.7381695 1.746152702 -0.073537 201 38 SH16924 16924 YGR001C_7_498029_497128_INTRON_36_97 5' exon 26.733017 135.176127 26.733017 109.44311 68.0880635 1.833070983 -0.073555 60 68 SH12583 12583 MT_15S MT_15S 22.863503 108.364644 22.863503 86.501141 54.682322 1.737846948 -0.073562 156 49 SH21278 21278 YPL129W spliced 24.654833 100.262953 62.458893 1.795594283 -0.073563 114 64 SH1708 1708 Leu6 3' flank 25.653462 105.425731 65.5395965 1.816503763 -0.073597 210 22 SH5980 5980 snR36 3' 21.46123 76.461496 48.961363 1.689853499 -0.073607 39 44 SH15750 15750 YCR031C_3_178212_177492_INTRON_8_314 intron 22.370822 104.155543 22.370822 82.784721 52.5777715 1.720802175 -0.073619 207 87 SH13183 13183 MT COX1 Exon4 28.714564 141.403827 28.714564 113.689263 71.2019135 1.852491665 -0.073654 142 84 SH10294 10294 RUF7 RUF7 81 98 24.3653 98.141724 61.253512 1.787130994 -0.07367 80 78 SH5160 5160 snR13 5' 24.111012 96.144613 60.1278125 1.779075404 -0.073676 169 13 SH14472 14472 MT 21S rRNA 21S rRNA3 22.193356 102.723071 22.193356 81.529715 51.8615355 1.714845371 -0.073678 5 97 SH1501 1501 Leu3 5' flank 26.192281 108.243336 67.2178085 1.827484349 -0.073728 75 62 SH14491 14491 MT 21S rRNA 21S rRNA3 21.040971 93.712078 21.040971 73.671107 47.356039 1.67537537 -0.073775 25 69 SH19544 19544 CBP1 1.2 24.88561 101.468379 63.1769945 1.800558962 -0.073787 163 73 SH3048 3048 Ser3 5' flank 34.612626 122.609978 78.611302 1.895484989 -0.073789 213 60 SH18569 18569 YNL012W_14_609682_611661_INTRON_106_189 intron 27.495425 137.60253 27.495425 111.107105 69.301265 1.840741162 -0.073822 147 5 SH18057 18057 YLR333C_12_796335_795573_INTRON_1_423 intron 22.582654 105.975821 22.582654 84.393167 53.4879105 1.728255633 -0.073828 29 81 SH12743 12743 MT COX1 COX1ai1 27.825364 138.640963 27.825364 111.815599 69.8204815 1.843982839 -0.073851 140 29 SH18465 18465 YMR143W_13_551927_552902_INTRON_25_568 intron 27.456781 137.483888 27.456781 111.027107 69.241944 1.840369252 -0.073873 118 58 SH14567 14567 MT 21S rRNA 21S rRNA3 56.837377 211.965973 56.837377 156.128596 106.4829865 2.027280223 -0.073878 91 103 SH13355 13355 MT COX1 intronic 21.950972 100.804125 21.950972 79.853153 50.9020625 1.70673538 -0.073885 105 78 SH21057 21057 YMR194W spliced 75.30187 184.132803 129.7173365 2.112998023 -0.073904 119 11 SH12479 12479 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 164.187025 481.47072 164.187025 318.283695 241.23536 2.382440967 -0.07391 111 77 SH7044 7044 snR62 snR62 11 32 21.67265 77.934073 49.8033615 1.697258657 -0.073945 161 99 SH9640 9640 RUF4 5' 26.019554 107.360177 66.6898655 1.824059842 -0.073945 171 78 SH6585 6585 snR47 snR47 31 48 26.336776 108.602777 67.4697765 1.829109272 -0.07399 67 55 SH253 253 Arg3 3' flank 26.928357 109.894083 68.41122 1.835127335 -0.074011 170 66 SH4886 4886 snR8 3' 24.060825 95.785589 59.923207 1.777595048 -0.074011 181 93 SH1223 1223 Ile1 3' flank 22.492784 83.732666 53.112725 1.725198584 -0.074012 140 99 SH16657 16657 YFR032C-A_6_223758_223245_INTRON_1_331 5' exon 28.477568 140.689378 28.477568 113.21181 70.844689 1.850307298 -0.074026 166 60 SH9758 9758 RUF4 RUF4 566 582 26.466079 108.888455 67.677267 1.830442812 -0.074034 31 44 SH6997 6997 snR60 snR60 66 85 23.424258 90.88473 57.154494 1.757050384 -0.074062 125 97 SH1284 1284 Ile2 tRNA 116 128 28.466288 113.1928 70.829544 1.850214446 -0.074106 16 83 SH18032 18032 YLR316C_12_766358_765266_INTRON_230_285 intron 26.139416 133.139918 26.139416 108.000502 67.069959 1.826528041 -0.07412 44 73 SH20281 20281 YDR450W spliced 24.373726 98.25381 61.313768 1.787558006 -0.074122 106 2 SH13709 13709 MT tRNAGlu (and 5' processing site for COB) tRNA / 3' 24.658288 123.983742 24.658288 100.325454 62.491871 1.795823528 -0.074132 187 53 SH12579 12579 MT_15S MT_15S 27.476558 137.561919 27.476558 111.085361 69.2809595 1.840613894 -0.07414 67 88 SH1851 1851 Leu9 5' flank - tRNA11 11 1609.191302 2289.068268 1949.129785 3.289840758 -0.074203 209 98 SH8473 8473 snoRNA cluster 5 3' 26.199188 133.514538 26.199188 108.31535 67.257269 1.827739229 -0.074243 82 48 SH11933 11933 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6551 6566 131.486897 269.549163 200.51803 2.302153429 -0.074251 25 7 SH16922 16922 YGL251C_7_31636_27921_INTRON_59_210 intron/exon 25.310518 128.011526 25.310518 103.701008 64.505763 1.809598517 -0.074253 128 30 SH12163 12163 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7701 7717 674.109368 1053.731178 863.920273 2.936473665 -0.074266 60 17 SH13278 13278 MT COX1 Exon 5a 24.389863 121.786549 24.389863 98.396686 61.3932745 1.788120798 -0.074274 62 27 SH14903 14903 MT tRNA Ile 3' 24.624691 123.793949 24.624691 100.169258 62.3969745 1.795163532 -0.074342 97 73 SH17729 17729 YKL156W_11_158616_159214_INTRON_4_353 intron 51.501277 198.708034 51.501277 148.206757 99.854017 1.999365541 -0.074363 56 81 SH779 779 Glu1 5' flank 24.477805 99.103164 61.7904845 1.790921601 -0.074371 160 89 SH9126 9126 snR7 U5 RNA 5' 29.237947 114.574433 71.90619 1.856766278 -0.074384 166 29 SH19021 19021 YOR182C_15_678792_678190_INTRON_4_414 intron 24.764593 124.661406 24.764593 100.896813 62.830703 1.798171919 -0.07444 190 42 SH9601 9601 RUF3 RUF3 391 407 121.408678 254.514056 187.961367 2.274068595 -0.074442 191 26 SH18038 18038 YLR333C_12_796335_795573_INTRON_1_423 exon/intron 24.027862 118.606976 24.027862 95.579114 59.803488 1.776726515 -0.074527 119 84 SH11352 11352 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3646 3661 15286.99559 16550.91529 15918.95544 4.201914567 -0.074565 166 76 SH14332 14332 MT VAR1 includes 5’ processing site VAR1 26.526832 134.580217 26.526832 109.053385 67.7901085 1.831166329 -0.074589 52 33 SH10862 10862 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1196 1213 627.286343 989.233157 808.25975 2.907550952 -0.074613 10 14 SH15101 15101 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 23.213366 111.507052 23.213366 89.293686 56.253526 1.750149749 -0.07463 33 81 SH3059 3059 Ser3 5' flank - tRNA8 8 34.515659 122.519217 78.517438 1.89496612 -0.074639 74 59 SH13316 13316 MT COX1 COX1-ai5a 23.224239 111.603494 23.224239 89.379255 56.301747 1.750521871 -0.074642 192 22 SH19750 19750 Negative Control 30.210358 116.082806 73.146582 1.864194037 -0.074703 202 67 SH3862 3862 RNaseP RNaseP 276 288 25.504811 104.745575 65.125193 1.813749023 -0.074709 164 79 SH8089 8089 snoRNA cluster 2 3' 24.672947 124.120823 24.672947 100.447876 62.5604115 1.796299597 -0.074728 56 3 SH17575 17575 YJL191W_10_73786_74610_INTRON_11_418 5' exon 25.695686 130.438467 25.695686 105.742781 65.7192335 1.81769249 -0.074774 57 98 SH13520 13520 MT COX1 intronic 23.395613 113.126461 23.395613 90.730848 57.0632305 1.756356355 -0.074803 35 104 SH9179 9179 snR7 U5 RNA U5 166 186 22.195535 81.638235 51.916885 1.715308627 -0.07481 182 71 SH12647 12647 MT_15S MT_15S 21.850936 100.08401 21.850936 79.233074 50.542005 1.703652466 -0.074811 113 23 SH21539 21539 copy of SH4149 40.032998 130.970912 85.501955 1.931976045 -0.074832 159 11 SH10435 10435 RUF8 RUF8 101 121 22.785209 86.018538 54.4018735 1.735613856 -0.074833 31 2 SH2770 2770 Pro6 5' flank 24.784856 101.03421 62.909533 1.798716461 -0.074857 88 54 SH1616 1616 Leu5 5' flank 30.153071 116.00477 73.0789205 1.863792123 -0.074863 76 63 SH672 672 Gln2 3' flank 24.882721 101.540704 63.2117125 1.800797556 -0.074882 138 43 SH2061 2061 Lys4 5' flank 32.981078 120.259098 76.620088 1.884342646 -0.074892 195 22 SH14179 14179 MT COB Exon6 23.732289 116.05657 23.732289 93.324281 58.528285 1.767365799 -0.074905 125 11 SH20935 20935 YLR406C spliced 30.825995 117.023361 73.924678 1.868789442 -0.07491 18 20 SH20494 20494 YGL251C spliced 22.793991 86.092559 54.443275 1.735944242 -0.074911 102 7 SH9623 9623 RUF3 3' 22.748118 85.744078 54.246098 1.734368504 -0.074922 23 69 SH260 260 Arg3 3' flank 26.791507 109.65005 68.2207785 1.833916671 -0.074925 165 27 SH7627 7627 snR189 3' 22.558652 84.312378 53.435515 1.727829999 -0.074964 130 3 SH19080 19080 YOR293W_15_867094_867848_INTRON_53_489 intron 23.198508 111.408681 23.198508 89.210173 56.2043405 1.749769856 -0.074971 79 85 SH2495 2495 Pro1 5' flank 24.246799 97.339496 60.7931475 1.783854629 -0.074985 210 26 SH21638 21638 copy of SH8143 103.931367 228.185988 166.0586775 2.220261575 -0.074986 118 63 SH10988 10988 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1826 1841 870.959181 1322.532168 1096.745675 3.04010593 -0.075003 85 10 SH17809 17809 YKR057W_11_551293_551878_INTRON_25_346 exon/intron 23.836169 116.973202 23.836169 94.137033 58.986601 1.770753371 -0.075012 43 82 SH20711 20711 YJL041W spliced 24.156475 96.6348 60.3956375 1.78100557 -0.075034 126 47 SH3063 3063 Ser3 tRNA 11 25 3534.099598 4576.930608 4055.515103 3.608046023 -0.075043 87 15 SH19385 19385 YPR043W_16_654161_654842_INTRON_3_405 intron 23.713908 115.913121 23.713908 93.199213 58.4565605 1.766833259 -0.075078 44 87 SH18048 18048 YLR333C_12_796335_795573_INTRON_1_423 intron 25.421961 128.768967 25.421961 104.347006 64.8844835 1.812140852 -0.075091 67 90 SH19316 19316 YPL198W_16_173151_174701_INTRON_12_420 intron 22.322287 103.877197 22.322287 82.55491 52.4385985 1.719651076 -0.075091 71 15 SH10209 10209 RUF6 RUF6 891 905 257.270638 456.974186 357.122412 2.552817106 -0.075118 176 15 SH18611 18611 YNL069C_14_494998_493953_INTRON_29_477 intron 26.746487 135.311073 26.746487 109.564586 68.1555365 1.833501141 -0.075141 15 18 SH3098 3098 Ser3 3' flank 25.426892 104.376973 64.9019325 1.812257628 -0.075145 116 58 SH16945 16945 YGR027C_7_534779_534126_INTRON_1_312 intron 25.842653 131.381797 25.842653 106.539144 66.1908985 1.820798276 -0.07515 192 54 SH4960 4960 snR9 3' 25.898616 106.830874 66.364745 1.82193743 -0.07515 129 97 SH21039 21039 YMR133W spliced 25.508206 104.800452 65.154329 1.813943277 -0.075162 17 71 SH20217 20217 YDR064W spliced 24.955886 101.942654 63.44927 1.80242663 -0.075187 77 77 SH20388 20388 YFL034C-B spliced 28.773856 113.897312 71.335584 1.853306221 -0.075198 204 88 SH7862 7862 snoRNA cluster1 intergenic 22.479581 105.219961 22.479581 83.74038 53.1099805 1.725176142 -0.075233 151 39 SH5016 5016 snR10 snR10 111 127 166.620599 322.180808 244.4007035 2.388102452 -0.075249 169 69 SH19733 19733 Negative Control 24.060779 95.908234 59.9845065 1.77803909 -0.075261 140 12 SH6478 6478 snR45 3' 22.469989 83.672295 53.071142 1.724858433 -0.075279 130 71 SH19058 19058 YOR234C_15_779404_778554_INTRON_20_546 intron 23.708328 115.884855 23.708328 93.176527 58.4424275 1.766728247 -0.075291 40 101 SH2603 2603 Pro3 5' flank 26.24924 108.486911 67.3680755 1.828454141 -0.075313 135 51 SH19471 19471 ADH1 22.065033 80.764426 51.4147295 1.711087555 -0.075315 201 85 SH10274 10274 RUF7 5' 24.517592 99.515859 62.0167255 1.792508832 -0.075318 93 90 SH12875 12875 MT COX1 COX1ai1 28.959747 142.154399 28.959747 114.194652 71.5771995 1.854774702 -0.075329 149 4 SH13347 13347 MT COX1 COX1-ai5a 22.76606 107.687126 22.76606 85.921066 54.343563 1.735148109 -0.075371 62 69 SH10782 10782 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 796 814 24.766271 100.979971 62.873121 1.798465019 -0.075381 131 100 SH4226 4226 telomerase RNA telomerase 166 182 29.353753 114.810649 72.082201 1.857828039 -0.075414 48 88 SH2986 2986 Ser1 3' flank 24.674662 100.511005 62.5928335 1.796524612 -0.075417 97 81 SH10298 10298 RUF7 RUF7 101 121 24.517354 99.525713 62.0215335 1.7925425 -0.075433 193 84 SH12698 12698 MT ORF 8 (hypothetical) ORF8 24.345475 121.509144 24.345475 98.163669 61.254572 1.78713851 -0.075444 139 30 SH15167 15167 MT tRNA Val 3' 22.965356 109.418801 22.965356 87.453445 55.2094005 1.742013031 -0.075451 169 67 SH20012 20012 YBR084C-A spliced 30.131716 116.005817 73.0687665 1.863731776 -0.07546 144 2 SH13386 13386 MT COX1 Exon 5b 25.812323 131.220277 25.812323 106.407954 66.1101385 1.820268067 -0.075471 181 68 SH17694 17694 YKL006W_11_431544_432358_INTRON_130_527 intron 23.962771 118.128258 23.962771 95.165487 59.564129 1.774984796 -0.075482 163 33 SH2132 2132 Met1 tRNA 46 60 24.520903 99.559985 62.040444 1.792674897 -0.075493 10 85 SH16982 16982 YGR034W_7_555923_556666_INTRON_20_496 3' exon 256.871945 712.357806 256.871945 456.485861 356.678903 2.552277422 -0.075494 18 37 SH155 155 Arg1 3' flank 25.09211 102.671157 63.8816335 1.805376013 -0.075494 139 10 SH16788 16788 YGL103W_7_310965_311925_INTRON_50_560 intron 29.324791 143.095439 29.324791 114.770648 72.0477195 1.857620239 -0.0755 145 54 SH17455 17455 YIL148W_9_68708_69528_INTRON_9_442 intron 26.685662 135.139712 26.685662 109.45405 68.069856 1.832954832 -0.075519 176 98 SH16794 16794 YGL103W_7_310965_311925_INTRON_50_560 3' exon 44.529847 181.359175 44.529847 137.829328 91.1795875 1.959897623 -0.075519 127 44 SH1787 1787 Leu8 5' flank 24.64997 100.393589 62.5217795 1.79603133 -0.07554 189 46 SH17048 17048 YGR214W_7_920570_921783_INTRON_91_545 intron 26.134927 133.232701 26.134927 108.097774 67.1163505 1.826828333 -0.075544 24 50 SH13925 13925 MT COB Cytbi3 22.896031 108.826969 22.896031 86.930938 54.9134845 1.739679002 -0.075556 160 11 SH17212 17212 YHR039C-A_8_187670_187164_INTRON_4_165 intron 24.841981 125.22781 24.841981 101.385829 63.113905 1.800125052 -0.075576 125 44 SH21672 21672 copy of SH9622 22.393028 83.121109 52.7570685 1.722280656 -0.075581 131 15 SH6141 6141 snR39B snR39B 46 62 30.891686 117.161288 74.026487 1.86938714 -0.075607 127 77 SH18893 18893 YOL120C_15_94401_93394_INTRON_113_559 intron 25.516994 129.400354 25.516994 104.88336 65.200177 1.814248775 -0.075615 12 62 SH4358 4358 telomerase RNA telomerase 826 844 24.336432 98.109726 61.223079 1.786915167 -0.075618 155 73 SH18321 18321 YML085C_13_99400_97941_INTRON_26_141 intron 26.877527 135.755918 26.877527 109.878391 68.377959 1.834916133 -0.075634 72 101 SH9412 9412 RUF2 5' 25.557206 105.096556 65.326881 1.815091924 -0.075666 130 73 SH517 517 Asp2 3' flank 33.06819 120.437176 76.752683 1.885093566 -0.075694 29 66 SH13191 13191 MT COX1 Exon4 26.14485 133.308359 26.14485 108.163509 67.1541795 1.827073047 -0.075708 37 38 SH20616 20616 YHR097C spliced 26.896796 109.925453 68.4111245 1.835126729 -0.075723 54 72 SH1433 1433 Leu2 5' flank 27.387793 110.988351 69.188072 1.840031229 -0.075735 102 54 SH17844 17844 YKR094C_11_618384_617630_INTRON_9_376 intron 21.864524 100.268174 21.864524 79.40365 50.634087 1.704442983 -0.075765 65 85 SH5994 5994 snR36 3' 24.020971 95.651816 59.8363935 1.77696541 -0.075816 193 104 SH17073 17073 YGR225W_7_945138_946919_INTRON_1184_1276 exon/intron 27.037346 136.277375 27.037346 110.240029 68.6386875 1.83656897 -0.075887 97 6 SH14655 14655 MT 21S rRNA 21S rRNA4 41.309413 173.294065 41.309413 132.984652 87.1470325 1.940252603 -0.075928 17 21 SH21848 21848 copy of SH17383 24.88035 101.612971 63.2466605 1.801037599 -0.075942 152 63 SH19823 19823 Negative Control 29.106002 114.456995 71.7814985 1.85601252 -0.075959 15 64 SH10467 10467 RUF8 RUF8 261 283 22.434853 83.469426 52.9521395 1.723883512 -0.075978 197 102 SH9009 9009 snR17a / U3a U3a 331 353 23.129022 88.765784 55.947403 1.747779932 -0.075986 39 103 SH18294 18294 YML073C_13_124172_123227_INTRON_16_430 intron 23.550323 114.580463 23.550323 92.03014 57.7902315 1.761854434 -0.076 169 26 SH12898 12898 MT COX1 intronic 24.369758 121.787154 24.369758 98.417396 61.393577 1.788122938 -0.076055 95 70 SH14074 14074 MT COB Cytbi4 23.065077 110.343981 23.065077 88.278904 55.6719905 1.745636749 -0.076071 175 85 SH6350 6350 snR43 5' - 7 -9 7 26.048079 107.690069 66.869074 1.825225309 -0.07609 78 47 SH17176 17176 YHR021C_8_148660_147862_INTRON_4_553 intron 29.524226 143.636505 29.524226 115.112279 72.3182525 1.859247923 -0.076109 119 47 SH478 478 Asp2 5' flank 25.389326 104.262021 64.8256735 1.811747038 -0.076122 183 54 SH1277 1277 Ile2 tRNA-intron 81 97 29.001683 114.304312 71.6529975 1.855234363 -0.076132 66 63 SH8881 8881 LSR1 / U2 RNA U2 1046 1062 98.121019 219.425012 158.7730155 2.200776693 -0.076145 88 94 SH1227 1227 Ile1 3' flank 22.06824 80.855882 51.462061 1.711487175 -0.076161 33 91 SH21216 21216 YOR122C spliced 29.134696 114.512825 71.8237605 1.85626814 -0.076162 99 68 SH14610 14610 MT 21S rRNA Sce1 endonuc 41.86054 174.690869 41.86054 133.830329 87.8454345 1.943719195 -0.076186 4 8 SH3391 3391 Thr4 tRNA 41 57 39.108548 129.63548 84.372014 1.926198416 -0.076196 127 102 SH2083 2083 Lys4 tRNA 81 93 39.897175 130.854133 85.375654 1.931334044 -0.076207 167 50 SH4419 4419 telomerase RNA telomerase 1131 1147 24.379322 98.509659 61.4444905 1.788482947 -0.076219 214 86 SH20630 20630 YHR123W spliced 51.013284 147.634331 99.3238075 1.99705336 -0.076276 7 91 SH10923 10923 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1501 1519 28040.16582 28256.3698 28148.26781 4.449451674 -0.076285 199 66 SH4030 4030 SRP RNA SRP RNA 41 59 23.53367 91.929578 57.731624 1.761413774 -0.076286 187 96 SH689 689 Gln3 5' flank 40.613916 131.956645 86.2852805 1.935936715 -0.076306 36 98 SH18570 18570 YNL012W_14_609682_611661_INTRON_106_189 intron 24.133666 119.717912 24.133666 96.584246 60.358956 1.780741719 -0.076329 190 53 SH4194 4194 telomerase RNA telomerase 6 23 108.277342 235.006513 171.6419275 2.234623383 -0.076374 30 48 SH11343 11343 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3601 3614 26895.10936 27240.34049 27067.72493 4.432451754 -0.07639 95 63 SH336 336 Arg5 tRNA 16 28 25.264026 103.634237 64.4491315 1.809217069 -0.076394 113 27 SH19554 19554 CBP1 2.2 22.777752 86.102655 54.4402035 1.73591974 -0.076399 145 96 SH19373 19373 YPR043W_16_654161_654842_INTRON_3_405 exon/intron 23.832864 117.08181 23.832864 94.248946 59.040905 1.771153006 -0.076435 16 18 SH20252 20252 YDR381W spliced 25.356729 104.118768 64.7377485 1.811157591 -0.076439 33 76 SH15547 15547 YBR078W_2_393082_394818_INTRON_59_388 intron 47.217175 188.136329 47.217175 141.919154 94.5681645 1.97574496 -0.076445 175 86 SH6214 6214 snR40 3' 24.05418 95.9747 60.01444 1.778255758 -0.076461 32 28 SH3116 3116 Ser4 5' flank - tRNA3 3 26.869834 109.910171 68.3900025 1.83499262 -0.076466 68 19 SH7877 7877 snoRNA cluster1 snR73 22.731034 107.483994 22.731034 85.75296 54.241997 1.73433567 -0.07647 104 42 SH731 731 Gln4 5' flank 39.255576 129.882354 84.568965 1.927211015 -0.07648 62 36 SH3354 3354 Thr3 3' flank 26.584781 109.289648 67.9372145 1.832107736 -0.076481 72 87 SH8372 8372 snoRNA cluster 5 5' 21.760099 99.498067 21.760099 78.737968 50.2490335 1.701127713 -0.076489 189 33 SH12729 12729 MT COX1 Exon1 24.392329 122.033854 24.392329 98.641525 61.516927 1.788994633 -0.076503 71 68 SH9862 9862 RUF5-1 RUF5-1 116 134 25.723716 106.033718 65.878717 1.818745133 -0.07652 189 26 SH13604 13604 MT ATP8/AAP1 ATP8 24.005226 118.604369 24.005226 95.599143 59.8021845 1.776717049 -0.076532 116 102 SH6338 6338 snR43 5' 24.52463 99.695973 62.1103015 1.793163637 -0.076533 4 57 SH16966 16966 YGR034W_7_555923_556666_INTRON_20_496 intron 27.413567 137.50457 27.413567 111.091003 69.252285 1.840434108 -0.076534 71 99 SH1230 1230 Ile1 3' flank 27.532704 111.34747 69.440087 1.841610256 -0.076536 36 49 SH17764 17764 YKL157W_11_154993_158183_INTRON_282_664 intron/exon 26.264064 133.855773 26.264064 108.591709 67.4278865 1.828839547 -0.076566 124 18 SH19040 19040 YOR234C_15_779404_778554_INTRON_20_546 intron 24.75437 124.768786 24.75437 101.014416 62.884393 1.798542873 -0.076589 91 89 SH18466 18466 YMR143W_13_551927_552902_INTRON_25_568 intron 29.873961 144.551325 29.873961 115.677364 72.7756625 1.861986168 -0.076616 196 86 SH11016 11016 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1966 1984 853.66162 1300.584181 1077.122901 3.032265259 -0.076663 177 66 SH5589 5589 snR33 3' 22.060935 80.846226 51.4535805 1.711415601 -0.07667 165 92 SH18399 18399 YMR125W_13_517538_520445_INTRON_26_347 intron 21.895263 100.586676 21.895263 79.691413 50.793338 1.705806754 -0.076689 40 36 SH21019 21019 YMR033W spliced 31.506496 118.140778 74.823637 1.874038814 -0.076725 178 9 SH20614 20614 YHR079C-A spliced 34.035508 121.939705 77.9876065 1.892025592 -0.076748 188 101 SH9108 9108 snR14 / U4 RNA 156-160 + 3' 156 23.867827 94.551487 59.209657 1.772392545 -0.076758 130 7 SH158 158 Arg2 5' flank 27.251242 110.754522 69.002882 1.83886723 -0.076767 87 104 SH20070 20070 YCR028C-A spliced 59.777889 160.840667 110.309278 2.042612042 -0.076804 48 38 SH20233 20233 YDR139C spliced 24.786893 101.199566 62.9932295 1.799293874 -0.076808 15 33 SH16309 16309 YDR450W_4_1359912_1360787_INTRON_48_482 intron 22.65407 106.853072 22.65407 85.199002 53.926536 1.731802524 -0.07682 140 77 SH9401 9401 RUF1 3' 39.011264 129.525718 84.268491 1.925665217 -0.076823 33 11 SH12023 12023 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7001 7018 24.170948 96.92797 60.549459 1.782110267 -0.076842 146 65 SH8500 8500 snR19 / U1 RNA 5' - 13 -4 13 26.847432 109.885932 68.366682 1.834844503 -0.076886 65 72 SH14746 14746 MT ORF11; tRNA Leu; tRNA Gln 5' / orf11 21.66409 98.771385 21.66409 78.107295 49.8856925 1.697976005 -0.076894 50 76 SH17236 17236 YHR079C-A_8_262554_262193_INTRON_114_199 5' exon 28.147588 139.832011 28.147588 112.684423 70.4160055 1.847671385 -0.076902 182 69 SH12844 12844 MT COX1 COX1ai1 23.890525 117.638169 23.890525 94.747644 59.3190845 1.77319444 -0.076962 40 97 SH4160 4160 SRP RNA 3' 27.248566 110.761762 69.005164 1.838881592 -0.076989 85 50 SH6782 6782 snR50 86-90 + 3' 86 24.62364 100.372188 62.497914 1.795865522 -0.07699 67 91 SH16712 16712 YGL031C_7_438393_437938_INTRON_1_456 intron 26.014617 132.607858 26.014617 107.593241 66.803929 1.824802006 -0.077014 175 11 SH20273 20273 YDR447C spliced 58.472555 158.887786 108.6801705 2.036150311 -0.077057 100 8 SH20627 20627 YHR123W spliced 24.79465 101.263864 63.029257 1.799542188 -0.077114 104 68 SH10793 10793 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 851 871 20.684446 71.591208 46.137827 1.664057136 -0.077115 63 25 SH20821 20821 YKR057W spliced 33.992361 121.898081 77.945221 1.891789493 -0.077119 179 73 SH18634 18634 YNL096C_14_444312_443395_INTRON_145_489 intron 72.177171 250.885264 72.177171 179.708093 125.942632 2.100172765 -0.07713 35 64 SH20669 20669 YIL069C spliced 27.58522 111.496299 69.5407595 1.84223943 -0.077144 212 29 SH11338 11338 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3576 3589 39.740949 130.676426 85.2086875 1.930483876 -0.077147 68 21 SH20546 20546 YGR214W spliced 24.359251 98.448723 61.403987 1.788196571 -0.077189 52 30 SH14504 14504 MT 21S rRNA 21S rRNA3 22.388538 104.616004 22.388538 83.227466 52.808002 1.722699736 -0.07719 18 30 SH7313 7313 snR66 snR66 56 70 106.528939 232.453706 169.4913225 2.229147468 -0.077206 204 27 SH20434 20434 YGL076C spliced 36.592863 125.852206 81.2225345 1.909676537 -0.077206 170 15 SH7975 7975 snoRNA cluster 2 snR57 21.991708 101.397854 21.991708 80.406146 51.198927 1.709260859 -0.077213 36 65 SH9268 9268 RUF1 5' 29.851687 115.677693 72.76469 1.861920683 -0.077231 76 15 SH13638 13638 MT ATP6 ATP6 23.613186 115.242344 23.613186 92.629158 58.121172 1.764334363 -0.077231 56 25 SH5966 5966 snR36 snR36 286 304 24.187087 97.094007 60.640547 1.78276311 -0.077235 127 31 SH8338 8338 snoRNA cluster4 snR53 23.088184 110.653744 23.088184 88.56556 55.826872 1.746843295 -0.077238 137 85 SH2380 2380 Phe4 5' flank 21.708132 78.439492 50.073812 1.699610654 -0.077254 167 82 SH7116 7116 snR63 snR63 86 108 22.520516 84.22797 53.374243 1.727331729 -0.077272 36 71 SH2106 2106 Met1 5' flank 23.393068 90.948504 57.170786 1.757174163 -0.077303 203 89 SH6613 6613 snR47 3' 22.35088 82.955558 52.653219 1.721424927 -0.077311 149 49 SH20678 20678 YIL106W spliced 26.617168 109.409531 68.0133495 1.832594163 -0.077327 214 94 SH12895 12895 MT COX1 intronic 32.903071 152.190337 32.903071 120.287266 76.5951685 1.884201376 -0.077365 158 43 SH13066 13066 MT COX1 intronic 22.689264 107.206274 22.689264 85.51701 54.103137 1.733222447 -0.077385 16 35 SH1671 1671 Leu6 5' flank 22.742109 85.920455 54.331282 1.735049953 -0.077396 5 55 SH20274 20274 YDR447C spliced 48.090286 143.327455 95.7088705 1.980952191 -0.077397 122 39 SH11513 11513 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4451 4464 1571.706445 2246.303384 1909.004915 3.280807046 -0.077406 13 26 SH5532 5532 snR33 5' 23.052835 88.308104 55.6804695 1.745702889 -0.077411 98 62 SH8426 8426 snoRNA cluster 5 intergenic 21.138127 94.716757 21.138127 74.57863 47.8583785 1.67995798 -0.077423 30 96 SH5017 5017 snR10 snR10 116 128 230.351492 417.476758 323.914125 2.510429887 -0.077431 72 18 SH11782 11782 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5796 5811 18896.36442 19982.09552 19439.22997 4.288679058 -0.077515 64 55 SH15453 15453 YBL087C_2_60732_59815_INTRON_43_546 intron 24.763165 124.902302 24.763165 101.139137 62.951151 1.799003675 -0.07759 46 45 SH18183 18183 YLR448W_12_1028848_1029762_INTRON_16_399 3' exon 24.776947 124.987339 24.776947 101.210392 62.9936695 1.799296908 -0.077591 130 72 SH13107 13107 MT COX1 COX1ai3 23.742428 116.40456 23.742428 93.662132 58.70228 1.76865497 -0.077611 28 26 SH19926 19926 YBL018C spliced 22.141955 81.492446 51.8172005 1.714473946 -0.077617 35 16 SH20742 20742 YJL191W spliced 24.023312 95.84874 59.936026 1.777687944 -0.077634 50 89 SH12966 12966 MT COX1 COX1ai2 20.545773 90.278541 20.545773 70.732768 45.6392705 1.659338694 -0.077634 131 41 SH8030 8030 snoRNA cluster 2 snR55 35.014721 157.441896 35.014721 123.427175 79.220948 1.898840035 -0.077637 69 19 SH2895 2895 Pro8 5' flank - tRNA10 10 360.724172 611.663744 486.193958 2.686809558 -0.077643 179 93 SH21289 21289 YPL175W spliced 28.565661 113.616036 71.0908485 1.851813698 -0.077647 18 21 SH10001 10001 RUF5-1 3' 24.748058 101.065911 62.9069845 1.798698867 -0.07765 137 96 SH4586 4586 U3b (snR17b) 3' 24.29572 97.993665 61.1446925 1.786358765 -0.077663 119 34 SH14752 14752 MT ORF11; tRNA Leu; tRNA Gln ORF11 24.382803 122.066909 24.382803 98.684106 61.5334545 1.789111297 -0.07767 46 36 SH19613 19613 RNA14 1.1 27.1442 110.578199 68.8611995 1.837974583 -0.077707 100 50 SH1438 1438 Leu2 5' flank 24.27471 97.83359 61.05415 1.785715189 -0.077722 171 22 SH5800 5800 snR35 snR35 186 208 27.827477 112.051395 69.939436 1.844722126 -0.077743 174 17 SH13125 13125 MT COX1 COX1ai3 22.210595 103.197431 22.210595 81.986836 52.0987155 1.716827016 -0.077749 206 14 SH6556 6556 snR46 3' 29.407414 115.025715 72.2165645 1.858636824 -0.077792 26 76 SH4369 4369 telomerase RNA telomerase 881 898 27.238045 110.787174 69.0126095 1.838928449 -0.077808 22 62 SH9972 9972 RUF5-1 RUF5-1 666 683 30.228831 116.286233 73.257532 1.864852283 -0.077825 143 81 SH13173 13173 MT COX1 Exon4 23.771882 116.683595 23.771882 93.911713 58.8417975 1.769685931 -0.077836 100 58 SH4370 4370 telomerase RNA telomerase 886 903 25.315862 104.020894 64.668378 1.810691968 -0.077839 27 10 SH14417 14417 MT 21S rRNA 21S rRNA3 24.817945 125.260101 24.817945 101.442156 63.1300505 1.800236137 -0.077843 71 55 SH7230 7230 snR65 5' 23.280208 90.11592 56.698064 1.75356823 -0.077844 4 17 SH14920 14920 MT tRNA Tyr 3' 23.348516 112.999228 23.348516 90.650712 56.999614 1.755871915 -0.077846 2 67 SH9482 9482 RUF2 RUF2 251 265 223.418511 407.288698 315.3536045 2.498797799 -0.077849 25 49 SH16744 16744 YGL076C_7_365994_364333_INTRON_565_1032 intron 25.064327 126.781762 25.064327 102.717435 63.890881 1.805438877 -0.077853 164 36 SH14426 14426 MT 21S rRNA 21S rRNA3 26.403163 134.374785 26.403163 108.971622 67.6873925 1.830507784 -0.077856 177 92 SH1296 1296 Ile2 3' flank 24.268994 97.805953 61.0374735 1.785596549 -0.077897 114 35 SH20779 20779 YKL006W spliced 30.067629 116.045891 73.05676 1.863660408 -0.077914 184 61 SH2894 2894 Pro8 5' flank - tRNA7 7 88.426856 204.675799 146.5513275 2.165989757 -0.077923 42 16 SH2562 2562 Pro2 tRNA-intron 46 63 89.750997 206.739237 148.245117 2.170980397 -0.077936 104 47 SH12182 12182 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7796 7813 30.421002 116.584945 73.5029735 1.866304908 -0.077953 147 7 SH8498 8498 snR19 / U1 RNA 5' - 2 -14 2 24.780241 101.25665 63.0184455 1.799467686 -0.077959 43 83 SH6806 6806 snR52 5' 83.95271 197.8398 140.896255 2.14889945 -0.07796 57 30 SH1084 1084 Gly3 3' flank 27.638558 111.666324 69.652441 1.842936341 -0.07808 159 5 SH2058 2058 Lys4 5' flank 73.129915 181.255694 127.1928045 2.104462543 -0.078114 159 101 SH91 91 Ala2 3' flank 23.235602 89.793357 56.5144795 1.752159732 -0.078117 191 63 SH10483 10483 RUF8 RUF8 341 358 29.166248 114.672067 71.9191575 1.856844591 -0.078152 116 8 SH12495 12495 MT_tRNA Pro 5' / tRNA 23.144545 111.232433 23.144545 89.087888 56.1162165 1.749088382 -0.078154 78 54 SH16212 16212 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 27.804403 138.831266 27.804403 112.026863 69.915633 1.844574294 -0.078161 150 104 SH21746 21746 copy of SH12761 71.131403 178.21305 124.6722265 2.095769716 -0.078165 152 96 SH15749 15749 YCR031C_3_178212_177492_INTRON_8_314 intron 25.295942 128.240031 25.295942 103.944089 64.6200155 1.810367058 -0.078165 79 45 SH17889 17889 YLR048W_12_242233_243350_INTRON_91_449 intron 25.532275 129.705879 25.532275 105.173604 65.3529395 1.815265126 -0.078173 90 78 SH6144 6144 snR39B snR39B 61 79 24.547852 100.055309 62.3015805 1.794499064 -0.078231 33 101 SH5867 5867 snR35 snR35 521 540 26.425995 109.043584 67.7347895 1.830811785 -0.078234 42 72 SH2585 2585 Pro2 3' flank 22.747959 86.040665 54.394312 1.735553488 -0.078236 194 23 SH18226 18226 YML026C_13_223828_222987_INTRON_48_448 intron 25.948581 132.300209 25.948581 107.351628 66.6501045 1.823800835 -0.078243 152 49 SH3875 3875 RNaseP RNaseP 341 356 30.957979 117.412249 74.185114 1.870316768 -0.078281 31 59 SH4544 4544 U3b (snR17b) U3b 276 290 24.833719 101.559628 63.1966735 1.800694219 -0.078295 34 42 SH11195 11195 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2861 2879 24.379075 98.722346 61.5507105 1.78923307 -0.07834 118 100 SH17554 17554 YJL189W_10_75932_76473_INTRON_7_392 intron 25.412662 128.977765 25.412662 104.565103 64.9888825 1.812839069 -0.078342 125 81 SH17683 17683 YKL006W_11_431544_432358_INTRON_130_527 intron 27.348433 137.406508 27.348433 111.058075 69.203254 1.840126516 -0.078358 128 67 SH3577 3577 Tyr2 3' flank 21.77928 79.020076 50.399678 1.702427762 -0.078365 116 69 SH10647 10647 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 121 138 1219.671199 1791.2159 1505.44355 3.177664475 -0.078366 59 78 SH13959 13959 MT COB Cytbi3 23.820556 117.165285 23.820556 94.344729 59.0826425 1.771459911 -0.078412 174 15 SH2982 2982 Ser1 3' flank 22.362561 83.138796 52.7506785 1.72222805 -0.078412 163 88 SH13156 13156 MT COX1 intronic 26.593301 135.013802 26.593301 109.420501 68.006901 1.832552985 -0.078414 201 17 SH11339 11339 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3581 3598 438.171456 724.490723 581.3310895 2.76442355 -0.078428 173 71 SH3306 3306 Thr2 3' flank 23.977936 95.573385 59.7756605 1.776524384 -0.078442 203 22 SH15335 15335 YAL030W_1_87288_87754_INTRON_103_215 exon/intron 25.165305 127.459012 25.165305 103.293707 64.229506 1.807734582 -0.078506 64 22 SH9606 9606 RUF3 416-431 + 3' 416 22.693723 85.65314 54.1734315 1.733786346 -0.078527 162 60 SH20342 20342 YER093C-A spliced 26.641758 109.533275 68.0875165 1.833067494 -0.078531 183 89 SH17642 17642 YJR145C_10_702761_701720_INTRON_15_270 intron 74.057585 255.761285 74.057585 182.7037 128.3806425 2.108499545 -0.078548 143 99 SH18055 18055 YLR333C_12_796335_795573_INTRON_1_423 intron 27.19186 136.92458 27.19186 110.73272 68.96229 1.838611674 -0.078581 130 89 SH18361 18361 YMR033W_13_337787_339276_INTRON_31_116 3' exon 28.278789 140.343893 28.278789 113.065104 70.6719465 1.849247053 -0.078598 40 22 SH14801 14801 "MT tRNAs (Lys, Arg1, Gly)" intergenic 23.030981 110.280879 23.030981 88.249898 55.6404395 1.745390552 -0.078611 174 2 SH1613 1613 Leu5 5' flank 23.485917 91.783612 57.6347645 1.760684523 -0.078618 9 42 SH17763 17763 YKL157W_11_154993_158183_INTRON_282_664 intron 27.840613 138.974379 27.840613 112.133766 69.9871895 1.845018554 -0.078655 103 16 SH12158 12158 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7676 7693 293.974887 512.972181 403.473534 2.605815052 -0.078663 99 57 SH4309 4309 telomerase RNA telomerase 581 599 59.031446 159.87493 109.453188 2.039228416 -0.078669 153 43 SH19719 19719 Negative Control 27.243634 110.85317 69.048402 1.839153632 -0.078724 168 49 SH8432 8432 snoRNA cluster 5 intergenic 47.035342 187.850182 47.035342 141.81484 94.425091 1.975087412 -0.078731 136 33 SH3341 3341 Thr3 tRNA 51 67 46.476979 140.990251 93.733615 1.971895367 -0.078781 172 6 SH16290 16290 YDR450W_4_1359912_1360787_INTRON_48_482 intron 29.249247 143.085265 29.249247 114.836018 72.0426325 1.857589574 -0.078785 147 2 SH14653 14653 MT 21S rRNA 21S rRNA4 24.47649 123.022289 24.47649 99.545799 62.0111445 1.792469747 -0.078817 76 72 SH2165 2165 Met2 5' flank 23.891851 94.941033 59.416442 1.773906642 -0.078844 86 20 SH18225 18225 YML026C_13_223828_222987_INTRON_48_448 intron 23.820703 117.208557 23.820703 94.387854 59.1042785 1.77161892 -0.078846 41 86 SH21818 21818 copy of SH15703 24.144528 96.92393 60.534229 1.782001015 -0.078891 64 25 SH5562 5562 snR33 snR33 96 112 31.820692 118.729266 75.274979 1.876650643 -0.078894 179 39 SH4289 4289 telomerase RNA telomerase 481 498 25.579699 105.481087 65.530393 1.816442773 -0.078904 130 91 SH4196 4196 telomerase RNA telomerase 16 32 27.953678 112.390802 70.17224 1.84616534 -0.078909 3 29 SH1961 1961 Lys2 tRNA 6 18 56.636011 156.255252 106.4456315 2.027127843 -0.078962 78 31 SH3679 3679 Val2 3' flank 23.84354 94.57799 59.210765 1.772400672 -0.078977 25 97 SH20544 20544 YGR214W spliced 24.493345 99.696963 62.095154 1.793057708 -0.078981 118 17 SH14388 14388 MT 21S rRNA 5' 22.701067 107.452251 22.701067 85.751184 54.2261255 1.734208575 -0.078996 159 78 SH21226 21226 YOR234C spliced 35.249135 123.855353 79.552244 1.900652435 -0.079011 60 63 SH6297 6297 snR42 snR42 266 282 25.373305 104.4183 64.8958025 1.812216607 -0.079048 9 51 SH883 883 Glu3 5' flank 27.767834 112.001834 69.884834 1.844382938 -0.079058 177 10 SH14481 14481 MT 21S rRNA 21S rRNA3 25.249594 128.025774 25.249594 103.77618 64.512887 1.809646477 -0.079059 165 11 SH19804 19804 Negative Control 32.798021 120.228585 76.513303 1.88373695 -0.07906 3 81 SH6366 6366 snR43 snR43 71 87 29.779667 115.670812 72.7252395 1.86168516 -0.079082 182 10 SH17864 17864 YLL050C_12_40413_39803_INTRON_15_193 intron 23.696587 116.145496 23.696587 93.448909 58.572748 1.7676956 -0.079082 22 103 SH9189 9189 snR7 U5 RNA 3' 22.632336 85.236215 53.9342755 1.731864849 -0.079089 163 59 SH14378 14378 MT ORF9 and ORF10 (hypothetical) ORF10 22.492498 105.670804 22.492498 84.178306 53.335402 1.727015573 -0.07911 33 84 SH551 551 Cys1 tRNA 56 68 27.902068 112.292561 70.0973145 1.84570138 -0.079113 156 22 SH19829 19829 Negative Control 24.436435 99.256917 61.846676 1.791316363 -0.079114 100 76 SH12434 12434 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 22.419668 105.049241 22.419668 83.629573 53.0246205 1.724477569 -0.079116 158 5 SH2135 2135 Met1 tRNA 61 73 85.860349 200.905189 143.382769 2.156496963 -0.079122 37 40 SH19478 19478 ADH1 30.848891 117.296508 74.0726995 1.869658172 -0.079126 132 88 SH12914 12914 MT COX1 COX1ai2 28.716202 141.740074 28.716202 114.023872 71.370037 1.853515922 -0.079134 110 35 SH18788 18788 YNL301C_14_64561_63569_INTRON_113_544 intron 21.082974 94.425081 21.082974 74.342107 47.7125405 1.678632542 -0.079141 103 14 SH14079 14079 MT COB Cytbi4 22.116683 102.556845 22.116683 81.440162 51.7784225 1.714148815 -0.079144 178 87 SH16410 16410 YER056C-A_5_270183_269421_INTRON_38_434 intron 26.119405 133.441727 26.119405 108.322322 67.2208635 1.827504087 -0.079146 82 44 SH1618 1618 Leu5 5' flank 23.539494 92.250487 57.8949905 1.762640987 -0.07921 202 82 SH200 200 Arg2 3' flank 28.29962 113.146279 70.7229495 1.849560365 -0.079213 78 24 SH138 138 Arg1 66-73 + 3' flank 66 3' flank 23.884123 94.918665 59.401394 1.773796637 -0.079232 16 36 SH8793 8793 LSR1 / U2 RNA U2 606 625 22.833858 86.788719 54.8112885 1.738870012 -0.079238 111 65 SH9288 9288 RUF1 RUF1 16 33 24.26011 97.872383 61.0662465 1.785801226 -0.079258 80 66 SH18470 18470 YMR143W_13_551927_552902_INTRON_25_568 intron 30.671792 146.709582 30.671792 117.03779 73.854791 1.868378673 -0.079263 156 41 SH3729 3729 Val3 3' flank 22.830634 86.77413 54.802382 1.738799436 -0.07935 25 35 SH12318 12318 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.206765 127.78493 25.206765 103.578165 64.392465 1.808835051 -0.07936 103 44 SH20813 20813 YKL186C spliced 26.274383 108.776344 67.5253635 1.829466931 -0.079373 106 9 SH5512 5512 snR32 3' 24.522775 99.975788 62.2492815 1.794134343 -0.079409 56 102 SH17090 17090 YHL001W_8_104270_105084_INTRON_130_527 intron 28.929768 142.304206 28.929768 114.374438 71.652103 1.855228942 -0.079429 192 24 SH19699 19699 Negative Control 28.202906 112.954737 70.5788215 1.848674402 -0.079449 206 85 SH10716 10716 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 466 481 178.451075 340.740517 259.595796 2.414297655 -0.07945 144 55 SH14863 14863 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 24.6869 124.581463 24.6869 100.894563 62.7907315 1.797895543 -0.079473 158 88 SH20039 20039 YBR186W spliced 25.374892 104.46202 64.918456 1.812368182 -0.07948 63 90 SH1778 1778 Leu8 5' flank 23.622088 92.915162 58.268625 1.76543477 -0.079515 62 24 SH19215 19215 YPL081W_16_404945_406039_INTRON_8_508 intron 22.910514 109.315561 22.910514 87.405047 55.1577805 1.741606782 -0.079535 97 59 SH18289 18289 YML067C_13_140214_139063_INTRON_32_124 3' exon 33.113229 152.84529 33.113229 120.732061 76.922645 1.886054209 -0.079545 65 80 SH10100 10100 RUF6 RUF6 346 365 22.144005 81.666636 51.9053205 1.715211877 -0.079558 88 96 SH19729 19729 Negative Control 23.830981 94.542147 59.186564 1.772223128 -0.079614 65 7 SH10525 10525 RUF8 RUF8 551 567 25.356171 104.376799 64.866485 1.812020365 -0.079629 137 90 SH10890 10890 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1336 1353 12863.32416 14267.06118 13565.19267 4.132425966 -0.079667 22 22 SH15602 15602 YBR119W_2_479296_480281_INTRON_9_97 5' exon 30.202004 145.551387 30.202004 116.349383 73.2756935 1.864959937 -0.079673 42 78 SH18245 18245 YML034W_13_209525_212155_INTRON_1921_2046 5' exon 24.563885 123.839929 24.563885 100.276044 62.4199645 1.795323517 -0.079683 44 29 SH2254 2254 Phe1 3' flank 25.516501 105.220217 65.368359 1.815367583 -0.079733 143 21 SH9265 9265 RUF1 5' 28.238052 113.0472 70.642626 1.849066835 -0.079743 22 94 SH1840 1840 Leu9 5' flank 24.314728 98.354828 61.334778 1.787706798 -0.079755 132 95 SH21315 21315 YPL249C-A spliced 48.201222 143.674686 95.937954 1.981990452 -0.079765 183 52 SH12394 12394 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 62.917841 227.739952 62.917841 165.822111 114.369976 2.05831203 -0.079772 75 37 SH1690 1690 Leu6 tRNA 16 30 91.235164 209.269462 150.252313 2.176821166 -0.079775 132 32 SH8312 8312 snoRNA cluster4 intergenic 21.575786 98.302019 21.575786 77.726233 49.6510095 1.695928083 -0.079784 117 36 SH11924 11924 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6506 6522 27.89171 112.313298 70.102504 1.845733531 -0.079832 200 35 SH15773 15773 YDL012C_4_431513_431104_INTRON_46_131 5' exon 26.636577 135.235018 26.636577 109.598441 68.117509 1.833258758 -0.079847 104 41 SH17690 17690 YKL006W_11_431544_432358_INTRON_130_527 intron 23.978707 118.69628 23.978707 95.717573 59.84814 1.777050658 -0.07985 107 68 SH13017 13017 MT COX1 COX1ai2 24.430882 122.721755 24.430882 99.290873 61.8608775 1.791416076 -0.079882 213 70 SH19802 19802 Negative Control 26.890701 110.1573 68.5240005 1.83584271 -0.079919 114 57 SH4134 4134 SRP RNA SRP RNA 561 573 31.963519 119.008506 75.4860125 1.877866485 -0.079923 139 59 SH18885 18885 YOL047C_15_242745_241612_INTRON_244_306 intron 26.651145 135.286008 26.651145 109.634863 68.143004 1.833421275 -0.079925 52 48 SH13135 13135 MT COX1 COX1ai3 24.393326 122.390504 24.393326 98.997178 61.695252 1.790251742 -0.079933 47 71 SH12261 12261 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.791574 117.06137 23.791574 94.269796 59.030685 1.771077823 -0.079964 108 16 SH4742 4742 snR4 3' 27.444821 111.36217 69.4034955 1.841381344 -0.079986 190 9 SH17419 17419 YIL111W_9_155219_155762_INTRON_2_89 exon/intron 24.26559 121.25549 24.26559 97.9899 61.127745 1.786238375 -0.079996 160 39 SH17613 17613 YJR021C_10_469271_468247_INTRON_317_396 exon/intron 24.338703 121.909758 24.338703 98.571055 61.454879 1.788556368 -0.080012 145 14 SH19166 19166 YPL079W_16_406631_407534_INTRON_12_432 5' exon 41.492364 174.029939 41.492364 133.537575 87.5149695 1.942082346 -0.080014 196 69 SH9709 9709 RUF4 RUF4 321 337 26.686833 109.718898 68.2028655 1.833802622 -0.080028 124 3 SH11015 11015 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1961 1974 34.660617 123.055647 78.858132 1.896846485 -0.080036 202 45 SH20773 20773 YKL006C-A spliced 26.759182 109.877606 68.318394 1.834537649 -0.08004 105 88 SH10129 10129 RUF6 RUF6 491 507 23.257841 90.154945 56.706393 1.753632023 -0.080112 58 83 SH12217 12217 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.029902 132.967138 26.029902 107.937236 66.983569 1.825968284 -0.080136 65 103 SH19282 19282 YPL143W_16_282121_282969_INTRON_20_544 intron 22.62232 106.878992 22.62232 85.256672 53.939496 1.731906884 -0.080173 195 74 SH21350 21350 YPR132W spliced 25.521049 105.280549 65.400799 1.815583054 -0.080176 159 14 SH10531 10531 RUF8 RUF8 581 602 22.46483 84.064989 53.2649095 1.726441193 -0.080197 194 61 SH3227 3227 Thr1 5' flank - tRNA9 9 25.857026 107.037363 66.4471945 1.822476649 -0.0802 130 48 SH15278 15278 MT 9S rRNA 9S 25.145289 127.47331 25.145289 103.328021 64.236655 1.807782918 -0.080211 201 56 SH17948 17948 YLR128W_12_398531_399434_INTRON_4_97 intron 26.486649 134.77798 26.486649 109.291331 67.88899 1.831799348 -0.080213 139 97 SH18697 18697 YNL130C_14_381156_379555_INTRON_30_470 5' exon 35.942604 159.96931 35.942604 125.026706 80.484655 1.905713087 -0.080226 144 6 SH13142 13142 MT COX1 intronic 24.146786 120.222608 24.146786 97.075822 60.611304 1.782553628 -0.080239 140 57 SH16482 16482 YER102W_5_362729_363698_INTRON_1_360 intron 28.824764 142.080253 28.824764 114.255489 71.5401265 1.854549704 -0.080248 53 20 SH19548 19548 CBP1 2.2 31.151818 117.814829 74.4833235 1.872059047 -0.080261 18 73 SH6389 6389 snR43 snR43 186 202 37.379805 127.263361 82.321583 1.915513713 -0.080262 48 93 SH8685 8685 LSR1 / U2 RNA U2 66 80 24.119727 96.867918 60.4938225 1.781711028 -0.080291 48 55 SH14222 14222 MT ATP9 ATP9 26.891384 136.073058 26.891384 110.181674 68.536529 1.835922106 -0.080311 122 92 SH15543 15543 YBR078W_2_393082_394818_INTRON_59_388 intron 31.279209 148.287736 31.279209 118.008527 74.643868 1.872994136 -0.080324 180 7 SH21770 21770 copy of SH13810 23.710777 93.679735 58.695256 1.768603001 -0.080343 71 22 SH8699 8699 LSR1 / U2 RNA U2 136 148 1455.485186 2101.505514 1778.49535 3.250052734 -0.080344 55 3 SH14487 14487 MT 21S rRNA 21S rRNA3 23.547085 114.965609 23.547085 92.418524 57.9828045 1.763299217 -0.080368 111 58 SH6380 6380 snR43 snR43 141 159 22.967747 87.930128 55.4489375 1.743893229 -0.080446 168 82 SH19433 19433 YPR132W_16_794960_795762_INTRON_66_430 intron 22.485526 105.729857 22.485526 84.244331 53.3649285 1.727255932 -0.080458 174 102 SH8674 8674 LSR1 / U2 RNA U2 11 28 24.059156 96.410397 60.2347765 1.779847303 -0.080481 96 89 SH10314 10314 RUF7 RUF7 181 202 22.282655 82.723756 52.5032055 1.720185819 -0.080482 81 24 SH17135 17135 YHR010W_8_126513_127484_INTRON_32_592 intron 25.91621 132.28713 25.91621 107.37092 66.643565 1.823758221 -0.080483 151 57 SH8221 8221 snoRNA cluster 3; snR51 24.981021 126.481187 24.981021 102.500166 63.7405935 1.804416103 -0.080517 7 76 SH7398 7398 snR68 3' 23.281117 90.380919 56.831018 1.754585436 -0.080575 6 14 SH9308 9308 RUF1 RUF1 116 133 22.999171 88.185496 55.5923335 1.745014904 -0.08058 145 67 SH10411 10411 RUF8 5' 26.666874 109.708118 68.187496 1.833704742 -0.080593 203 14 SH3596 3596 Val1 5' flank 23.516166 92.204862 57.860514 1.762382287 -0.080622 143 28 SH12879 12879 MT COX1 COX1ai1 23.524571 114.796628 23.524571 92.272057 57.898314 1.762665917 -0.080649 191 58 SH7081 7081 snR63 5' 23.360727 91.013845 57.187286 1.757299486 -0.080659 193 48 SH18549 18549 YMR230W_13_732413_733140_INTRON_53_462 intron 26.297523 134.201839 26.297523 108.904316 67.6009195 1.829952603 -0.080707 186 51 SH18550 18550 YMR230W_13_732413_733140_INTRON_53_462 intron 25.446727 129.383732 25.446727 104.937005 65.191866 1.814193412 -0.080709 142 17 SH19226 19226 YPL090C_16_378390_377286_INTRON_7_400 intron 26.909458 136.15569 26.909458 110.246232 68.577845 1.836183834 -0.080741 20 43 SH9937 9937 RUF5-1 RUF5-1 491 507 25.636369 105.93087 65.7836195 1.818117765 -0.080762 71 38 SH15295 15295 MT 9S rRNA 9S / 3' 21.287482 96.11617 21.287482 75.828688 48.558085 1.686261551 -0.080768 14 71 SH13482 13482 MT COX1 intronic 23.016661 110.35578 23.016661 88.339119 55.67789 1.745682769 -0.080777 175 97 SH5821 5821 snR35 snR35 291 307 66.440026 171.289971 118.8649985 2.075053989 -0.080778 206 42 SH9444 9444 RUF2 RUF2 61 73 103.857323 228.849886 166.3536045 2.221032215 -0.08078 186 33 SH5137 5137 snR11 3' 26.508537 109.373256 67.9408965 1.832131273 -0.080798 187 74 SH7284 7284 snR66 5' 25.492557 105.186336 65.3394465 1.815175451 -0.080835 39 82 SH10055 10055 RUF6 RUF6 121 138 25.008818 102.67059 63.839704 1.805090865 -0.080843 153 104 SH16327 16327 YDR471W_4_1401759_1402553_INTRON_32_415 intron 29.240336 143.17686 29.240336 114.936524 72.08843 1.857865567 -0.080844 138 33 SH5229 5229 snR30 5' - 13 -4 13 36.919692 126.591115 81.7554035 1.912516466 -0.080857 141 77 SH13768 13768 MT COB intronic 24.675783 124.623535 24.675783 100.947752 62.8117675 1.798041014 -0.08087 127 27 SH12598 12598 MT_15S MT_15S 26.93134 136.233509 26.93134 110.302169 68.6167545 1.836430173 -0.080883 135 48 SH10379 10379 RUF7 3' 25.981356 107.746318 66.863837 1.825191295 -0.080887 4 90 SH19753 19753 Negative Control 34.668823 123.123503 78.896163 1.897055882 -0.080963 187 5 SH5053 5053 snR10 3' 24.359933 98.838486 61.5992095 1.789575139 -0.080987 112 71 SH21336 21336 YPR063C spliced 23.42337 91.530272 57.476821 1.75949274 -0.081019 20 32 SH1986 1986 Lys2 3' flank 23.541799 92.439806 57.9908025 1.763359119 -0.081021 87 42 SH20946 20946 YLR448W spliced 33.68284 121.671584 77.677212 1.890293629 -0.081021 66 53 SH7213 7213 snR64 3' 23.123404 89.193567 56.1584855 1.749415387 -0.08105 94 71 SH15686 15686 YBR191W_2_606228_607098_INTRON_12_399 intron 46.438172 186.537144 46.438172 141.098972 93.768572 1.972057302 -0.081066 124 43 SH10600 10600 RUF8 RUF8 926 940 35.394732 124.215404 79.805068 1.902030472 -0.081079 73 76 SH19864 19864 Negative Control 39.107044 129.959275 84.5331595 1.927027101 -0.081133 41 103 SH10206 10206 RUF6 RUF6 876 896 26.912511 110.277663 68.595087 1.836293011 -0.081165 155 59 SH18870 18870 YNR053C_14_723108_721117_INTRON_811_1341 intron 24.929681 126.21699 24.929681 102.287309 63.608495 1.80351512 -0.081181 189 37 SH5237 5237 snR30 snR30 36 50 64.253249 168.003848 116.1285485 2.064938998 -0.081183 86 15 SH1655 1655 Leu5 3' flank 25.746227 106.540454 66.1433405 1.820486125 -0.081187 68 3 SH2130 2130 Met1 tRNA 36 52 70.851962 178.085245 124.4686035 2.095059817 -0.081193 39 48 SH7304 7304 snR66 snR66 11 28 99.949643 222.910766 161.4302045 2.207984797 -0.08122 206 98 SH9989 9989 RUF5-1 RUF5-1 751 768 25.909573 107.400878 66.6552255 1.823834202 -0.081251 82 36 SH5303 5303 snR30 snR30 366 378 25.926807 107.491417 66.709112 1.82418516 -0.081254 48 91 SH10397 10397 RUF8 5' 37.564093 127.610631 82.587362 1.916913594 -0.081262 8 50 SH18898 18898 YOL120C_15_94401_93394_INTRON_113_559 intron 23.609386 115.593248 23.609386 92.983862 58.296624 1.765643405 -0.081264 59 29 SH7601 7601 snR189 snR189 76 92 27.229036 110.972775 69.1009055 1.839483738 -0.081293 54 89 SH3324 3324 Thr3 5' flank 25.729576 106.465167 66.0973715 1.820184189 -0.081329 84 14 SH11764 11764 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5706 5723 393.207978 660.70444 526.956209 2.721774526 -0.081332 48 87 SH18661 18661 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.628113 141.601128 28.628113 113.973015 71.300564 1.853092965 -0.08137 190 83 SH19631 19631 RNA14 2.2 26.451458 109.281449 67.8664535 1.831655155 -0.081374 51 11 SH1210 1210 Ile1 tRNA 11 25 92.003176 210.655686 151.329431 2.179923399 -0.081377 80 65 SH2871 2871 Pro7 3' flank 25.119204 103.297278 64.208241 1.807590772 -0.081504 51 62 SH16497 16497 YER117W_5_396765_397649_INTRON_43_513 intron 25.38257 129.050701 25.38257 104.668131 65.0253505 1.813082702 -0.081505 99 77 SH5798 5798 snR35 snR35 176 200 25.33215 104.405483 64.8688165 1.812035975 -0.081506 169 44 SH4906 4906 snR9 5' 22.56262 84.92436 53.74349 1.730325865 -0.081538 97 9 SH15197 15197 MT COX3 cox3 22.524685 106.162178 22.524685 84.637493 53.581089 1.729011536 -0.081551 77 75 SH9749 9749 RUF4 RUF4 521 537 25.857509 107.15778 66.5076445 1.822871567 -0.081603 74 68 SH17942 17942 YLR128W_12_398531_399434_INTRON_4_97 5' exon 25.807362 131.703571 25.807362 106.896209 66.3517855 1.821852614 -0.081616 132 69 SH15839 15839 YDL075W_4_322225_322987_INTRON_58_478 intron 24.265863 121.424285 24.265863 98.158422 61.2121425 1.786837581 -0.08165 178 85 SH16502 16502 YER117W_5_396765_397649_INTRON_43_513 intron 23.950449 118.625804 23.950449 95.675355 59.812902 1.776794874 -0.081673 155 63 SH5839 5839 snR35 snR35 381 393 104.401318 229.803398 167.102358 2.222982578 -0.081702 204 10 SH7738 7738 snoRNA cluster1 intergenic 23.909853 118.272243 23.909853 95.36239 59.6361215 1.775509391 -0.081721 85 21 SH19907 19907 YAL001C spliced 33.871917 121.994552 77.9332345 1.891722701 -0.081724 144 37 SH12371 12371 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.11919 127.434324 25.11919 103.315134 64.217162 1.807651109 -0.081725 90 80 SH7775 7775 snoRNA cluster1 intergenic 22.509966 106.051417 22.509966 84.541451 53.5257085 1.728562425 -0.081727 127 49 SH16847 16847 YGL178W_7_167356_170575_INTRON_4_643 3' exon 22.555779 106.445522 22.555779 84.889743 53.722761 1.730158324 -0.081734 65 32 SH889 889 Glu3 5' flank 22.465586 84.209233 53.3374095 1.727031919 -0.081771 85 6 SH3717 3717 Val3 66-73 + 3' flank 66 21.745001 79.055949 50.400475 1.702434629 -0.081798 82 74 SH2697 2697 Pro4 3' flank 25.054226 102.98464 64.019433 1.806311823 -0.081813 193 102 SH11235 11235 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3061 3077 25656.44694 26225.8387 25941.14282 4.413989105 -0.081818 197 76 SH11255 11255 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3161 3174 28.377213 113.470308 70.9237605 1.850791755 -0.081858 69 54 SH9378 9378 RUF1 RUF1 466 481 98.788405 221.197505 159.992955 2.20410086 -0.081861 85 94 SH13597 13597 MT ATP8/AAP1 5' / ATP8 29.289246 143.358594 29.289246 115.069348 72.179297 1.858412648 -0.081867 101 43 SH12231 12231 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.146369 133.786313 26.146369 108.639944 67.3931565 1.828615798 -0.081901 196 93 SH10098 10098 RUF6 RUF6 336 353 23.648122 93.347082 58.497602 1.767138063 -0.081931 7 22 SH15709 15709 YBR220C_2_663261_662457_INTRON_302_722 intron 26.015637 133.030382 26.015637 108.014745 67.015191 1.82617326 -0.081934 34 85 SH17591 17591 YJL191W_10_73786_74610_INTRON_11_418 intron 23.415703 113.974049 23.415703 91.558346 57.4870245 1.75956983 -0.081943 142 2 SH4493 4493 U3b (snR17b) U3b 21 42 23.362468 91.149887 57.2561775 1.757822351 -0.081943 127 61 SH10282 10282 RUF7 RUF7 21 36 35.211692 123.980291 79.5959915 1.900891197 -0.081969 150 81 SH15559 15559 YBR082C_2_407127_406586_INTRON_48_142 intron 25.499619 129.821419 25.499619 105.3218 65.4107095 1.81564886 -0.082029 14 97 SH7332 7332 snR66 3' 26.94376 110.396592 68.670176 1.83676816 -0.082033 204 96 SH16763 16763 YGL087C_7_346902_346404_INTRON_12_96 intron/exon 25.670883 130.888945 25.670883 106.218062 65.9444725 1.819178399 -0.082046 187 86 SH5699 5699 snR34 snR34 416 433 26.785139 110.052643 68.418891 1.83517603 -0.082068 52 99 SH314 314 Arg5 5' flank 27.150128 110.848686 68.999407 1.838845358 -0.082091 131 81 SH5320 5320 snR30 snR30 451 468 27.317053 111.210495 69.263774 1.840506151 -0.082092 213 99 SH7498 7498 snR71 3' 24.039847 96.418136 60.2289915 1.779805591 -0.082093 139 12 SH21453 21453 copy of SH379 32.727054 120.300311 76.5136825 1.883739104 -0.082103 59 33 SH10400 10400 RUF8 5' 27.116241 110.775863 68.946052 1.838509403 -0.082104 54 83 SH13802 13802 MT COB intronic 24.648103 124.550897 24.648103 100.902794 62.7754485 1.797789824 -0.08211 189 102 SH61 61 Ala2 5' flank 25.644465 106.086472 65.8654685 1.818657785 -0.082125 127 39 SH19151 19151 YPL075W_16_412249_415357_INTRON_9_759 intron 24.860646 125.866089 24.860646 102.005443 63.4330445 1.802315556 -0.082131 179 79 SH16910 16910 YGL232W_7_62074_63001_INTRON_58_115 3' exon 23.694675 116.421649 23.694675 93.726974 58.7108245 1.768718179 -0.082133 182 51 SH20526 20526 YGR118W spliced 36.565258 126.122635 81.3439465 1.910325239 -0.08215 86 52 SH17604 17604 YJL205C-A_10_50443_50139_INTRON_33_175 intron 23.83442 117.652062 23.83442 94.817642 59.326031 1.773245294 -0.082174 28 48 SH5811 5811 snR35 snR35 241 259 33.16599 120.967063 77.0665265 1.886865785 -0.082177 166 4 SH21044 21044 YMR142C spliced 41.305345 133.402421 87.353883 1.941282215 -0.082182 149 24 SH15640 15640 YBR186W_2_600511_602318_INTRON_1552_1664 intron 26.990549 136.497777 26.990549 110.507228 68.7488885 1.837265681 -0.082183 57 86 SH4650 4650 snR3 snR3 166 180 26.798656 110.089061 68.4438585 1.835334485 -0.082186 83 16 SH12803 12803 MT COX1 COX1ai1 26.912078 136.248776 26.912078 110.336698 68.624388 1.836478484 -0.082189 74 69 SH19686 19686 Negative Control 23.900348 95.339086 59.619717 1.77538991 -0.082242 45 39 SH19725 19725 Negative Control 27.124034 110.801272 68.962653 1.83861396 -0.082248 150 67 SH5898 5898 snR36 5' 22.695789 86.005212 54.3505005 1.735203548 -0.082272 207 40 SH18961 18961 YOL127W_15_80347_81189_INTRON_14_427 intron 26.757945 135.76339 26.757945 110.005445 68.381695 1.834939862 -0.082277 46 75 SH11537 11537 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4571 4584 465.250078 765.247126 615.248602 2.789050636 -0.082321 60 16 SH19832 19832 Negative Control 23.521159 92.407805 57.964482 1.763161959 -0.082359 6 64 SH9575 9575 RUF3 RUF3 261 277 26.047577 108.219658 67.1336175 1.82694005 -0.082373 205 60 SH14577 14577 MT 21S rRNA intronic 24.239765 121.273286 24.239765 98.033521 61.136643 1.786301588 -0.082465 183 47 SH3160 3160 Ser5 5' flank 25.458868 105.146632 65.30275 1.81493147 -0.082484 86 23 SH7566 7566 snR189 5' 21.956462 80.588663 51.2725625 1.709885023 -0.082499 50 82 SH4516 4516 U3b (snR17b) U3b 136 153 25.135837 103.464865 64.300351 1.808213344 -0.082504 159 22 SH1499 1499 Leu3 5' flank 28.475698 113.718807 71.0972525 1.851852818 -0.08251 191 21 SH271 271 Arg4 5' flank 23.643786 93.370795 58.5072905 1.767209986 -0.082529 153 63 SH3307 3307 Thr2 3' flank 23.846132 94.945821 59.3959765 1.773757027 -0.082552 84 66 SH12711 12711 MT ORF 8 (hypothetical) ORF8 21.413875 97.243809 21.413875 76.829934 49.1219045 1.691275196 -0.082556 35 8 SH573 573 Gln1 5' flank 23.381524 91.354992 57.368258 1.758671663 -0.082567 154 83 SH10413 10413 RUF8 5' - 11 -9 11 25.55635 105.663764 65.610057 1.816970415 -0.08258 140 33 SH14206 14206 MT COB 3' 24.951569 126.466011 24.951569 102.514442 63.7330055 1.804364399 -0.082595 22 27 SH5195 5195 snR13 3' 24.213795 97.841473 61.027634 1.785526533 -0.082601 65 53 SH19514 19514 ACT1 23.05789 88.831354 55.944622 1.747758344 -0.082635 14 70 SH10390 10390 RUF7 3' 27.153966 110.889468 69.021717 1.838985759 -0.082643 75 32 SH5464 5464 snR32 5' 21.659935 78.532828 50.0963815 1.699806358 -0.082643 30 9 SH11202 11202 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2896 2913 36.870129 126.628399 81.749264 1.912483851 -0.082648 125 61 SH18922 18922 YOL121C_15_92849_92025_INTRON_21_410 intron 29.157338 143.065747 29.157338 114.908409 72.0328735 1.85753074 -0.08266 112 76 SH10329 10329 RUF7 RUF7 256 275 25.098308 103.282956 64.190632 1.807471652 -0.082668 29 73 SH11287 11287 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3321 3339 82.281731 195.782276 139.0320035 2.143114781 -0.08268 180 86 SH6914 6914 snR58 5' 24.09089 96.87908 60.484985 1.781647577 -0.082689 130 82 SH6376 6376 snR43 snR43 121 136 28.092587 112.913784 70.5031855 1.84820874 -0.082691 61 104 SH20125 20125 YDL079C spliced 23.986995 96.065368 60.0261815 1.778340717 -0.082725 202 17 SH12384 12384 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.714854 144.49185 29.714854 115.776996 72.745925 1.861808671 -0.08276 175 82 SH14932 14932 MT tRNA Asn tRNA 23.948461 118.716897 23.948461 95.768436 59.8584485 1.777125456 -0.08278 107 27 SH14463 14463 MT 21S rRNA 21S rRNA3 23.06194 110.939947 23.06194 88.878007 55.9699735 1.747955101 -0.082798 88 86 SH7909 7909 snoRNA cluster1 intergenic 20.296012 88.787604 20.296012 69.491592 44.893802 1.652186387 -0.082832 125 93 SH223 223 Arg3 5' flank 23.168237 89.711083 56.43966 1.751584389 -0.082843 68 54 SH4743 4743 snR4 3' 27.077583 110.736918 68.9072505 1.838264921 -0.08287 43 100 SH4673 4673 snR4 5' 24.478763 99.980963 62.229863 1.793998845 -0.082892 33 98 SH6649 6649 snR48 snR48 71 87 24.457288 99.810075 62.1336815 1.793327087 -0.082901 141 6 SH5500 5500 snR32 snR32 161 177 132.141646 271.927918 202.034782 2.305426143 -0.082935 51 54 SH13362 13362 MT COX1 intronic 24.280161 121.683191 24.280161 98.40303 61.3415955 1.787755068 -0.08295 5 54 SH18941 18941 YOL127W_15_80347_81189_INTRON_14_427 5' exon 27.790419 139.073241 27.790419 112.282822 70.0366205 1.845325182 -0.082965 205 81 SH7758 7758 snoRNA cluster1 snR76 26.253167 134.191599 26.253167 108.938432 67.5957995 1.829919709 -0.082987 176 19 SH15176 15176 MT COX3 5' 22.41279 105.329987 22.41279 83.917197 53.1649935 1.725625765 -0.08299 46 43 SH1077 1077 Gly3 3' flank 24.841662 101.975767 63.4087145 1.802148949 -0.082991 36 87 SH13880 13880 MT COB intronic 22.897736 109.520868 22.897736 87.623132 55.260434 1.742414291 -0.082994 150 55 SH9559 9559 RUF3 RUF3 181 197 37.381973 127.44313 82.4125515 1.91599336 -0.083016 91 79 SH6579 6579 snR47 snR47 1 22 20.753009 72.460615 46.606812 1.668449397 -0.083028 35 103 SH13540 13540 MT COX1 intronic 22.200428 103.555941 22.200428 82.355513 52.2779705 1.718318719 -0.083063 169 54 SH5035 5035 snR10 snR10 206 218 157.413259 309.857044 233.6351515 2.368538185 -0.08311 206 21 SH21805 21805 copy of SH15280 24.249185 98.173387 61.211286 1.786831504 -0.083112 80 83 SH8621 8621 snR19 / U1 RNA U1 601 618 23.217088 90.123023 56.6700555 1.753353638 -0.083158 178 24 SH18267 18267 YML056C_13_164176_162194_INTRON_461_868 intron 22.785621 108.560331 22.785621 86.77471 54.7801655 1.73862334 -0.083164 2 37 SH9847 9847 RUF5-1 RUF5-1 41 60 25.956347 107.807724 66.8820355 1.825309482 -0.083165 200 27 SH13141 13141 MT COX1 intronic 26.224206 134.109117 26.224206 108.884911 67.5545585 1.82965466 -0.083167 170 21 SH10639 10639 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 81 96 2081.382051 2891.196316 2486.289184 3.395551641 -0.083168 47 10 SH7197 7197 snR64 snR64 51 68 30.868087 117.55536 74.2117235 1.870472518 -0.083177 105 22 SH19607 19607 RNA14 1.1 23.060663 88.912105 55.986384 1.748082419 -0.083272 66 54 SH16246 16246 YDR381W_4_1236547_1237993_INTRON_286_1051 3' exon 23.061407 110.98131 23.061407 88.919903 55.990655 1.748115548 -0.083293 10 12 SH21221 21221 YOR182C spliced 32.598813 120.176005 76.387409 1.883021779 -0.083297 31 90 SH10814 10814 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 956 976 1202.116748 1773.798699 1487.957724 3.172590592 -0.083298 135 20 SH541 541 Cys1 tRNA 6 18 400.826557 672.653555 536.740056 2.729764007 -0.083302 127 69 SH13288 13288 MT COX1 Exon 5a / COX1 ai5 23.14024 111.67706 23.14024 89.53682 56.33853 1.750805511 -0.083317 57 73 SH7158 7158 snR63 3' 23.195544 89.971338 56.583441 1.752689355 -0.083339 213 6 SH19640 19640 RNA14 2.2 23.643883 93.450232 58.5470575 1.767505073 -0.08335 33 21 SH205 205 Arg2 3' flank 24.003989 96.26226 60.1331245 1.77911377 -0.083368 68 80 SH5992 5992 snR36 3' 22.363795 83.583945 52.97387 1.724061701 -0.083409 134 15 SH8143 8143 snoRNA cluster 3; intergenic 201.60576 576.780459 201.60576 376.174699 288.8902295 2.460732854 -0.083438 88 100 SH6605 6605 snR47 3' 25.451375 105.186624 65.3189995 1.815039524 -0.083443 192 95 SH15588 15588 YBR084C-A_2_415219_414144_INTRON_3_508 intron 25.726757 131.354879 25.726757 106.628122 66.1774395 1.82070996 -0.083454 54 24 SH4124 4124 SRP RNA SRP RNA 511 523 30.769225 117.422527 74.095876 1.869794037 -0.083459 214 83 SH739 739 Gln4 5' flank 24.0895 96.945142 60.517321 1.781879694 -0.083464 198 33 SH10133 10133 RUF6 RUF6 511 527 25.446661 105.16407 65.3053655 1.814948864 -0.083468 5 34 SH2287 2287 Phe2 tRNA-exon/intron 31 48 25.839303 107.219899 66.529601 1.823014919 -0.083477 190 43 SH13108 13108 MT COX1 COX1ai3 26.225082 134.131627 26.225082 108.906545 67.5658135 1.82972701 -0.083508 130 76 SH16064 16064 YDR005C_4_458099_456832_INTRON_7_86 5' exon 29.985351 145.221116 29.985351 116.235765 73.110558 1.863980099 -0.083535 38 21 SH3745 3745 Val4 5' flank 26.92324 110.441227 68.6822335 1.83684441 -0.083558 144 82 SH14036 14036 MT COB Cytbi4 22.786424 108.60402 22.786424 86.817596 54.80201 1.738796488 -0.083568 5 4 SH6237 6237 snR42 5' 22.581803 85.257557 53.91968 1.731747306 -0.083641 92 27 SH13396 13396 MT COX1 intronic 22.708572 107.936476 22.708572 86.227904 54.468238 1.736143326 -0.083657 99 63 SH6252 6252 snR42 snR42 41 55 229.092013 417.251091 323.171552 2.509433124 -0.083686 49 18 SH18477 18477 YMR143W_13_551927_552902_INTRON_25_568 intron 22.681609 107.707341 22.681609 86.025732 54.3536705 1.735228877 -0.083706 97 33 SH21020 21020 YMR079W spliced 26.14503 108.741767 67.4433985 1.828939446 -0.083717 63 19 SH21152 21152 YNL265C spliced 23.397796 91.588366 57.493081 1.759615583 -0.083725 123 38 SH19585 19585 AEP2/ATP13 2.1 319.819859 553.377992 436.5989255 2.640082663 -0.083769 45 27 SH4054 4054 SRP RNA SRP RNA 161 180 23.331549 91.083864 57.2077065 1.757454537 -0.083806 198 61 SH14221 14221 MT ATP9 ATP9 28.578672 141.595683 28.578672 114.017011 71.2978415 1.853076382 -0.083828 205 44 SH6342 6342 snR43 5' 24.554778 100.555647 62.5552125 1.796263504 -0.083829 167 87 SH10518 10518 RUF8 RUF8 516 534 24.124771 97.264862 60.6948165 1.783151603 -0.083878 21 4 SH9690 9690 RUF4 RUF4 226 240 25.570587 105.848353 65.70947 1.817627964 -0.083908 53 8 SH1478 1478 Leu2 3' flank 27.447333 111.600079 69.523706 1.842132914 -0.083915 59 23 SH399 399 Asn1 3' flank 21.788031 79.525438 50.6567345 1.70463719 -0.083922 167 33 SH1330 1330 Ile3 tRNA-exon/intron 31 47 33.103853 120.976931 77.040392 1.886718484 -0.083923 161 29 SH11567 11567 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4721 4734 106.754602 233.723908 170.239255 2.23105971 -0.083934 38 84 SH5061 5061 snR11 5' 90.462338 208.575384 149.518861 2.17469598 -0.083962 205 51 SH16626 16626 YFL039C_6_54695_53260_INTRON_11_318 intron 24.191148 120.990989 24.191148 97.799841 60.9954945 1.785297757 -0.083974 170 87 SH430 430 Asp1 5' flank 24.027404 96.506538 60.266971 1.780079365 -0.083975 48 83 SH15423 15423 YBL072C_2_89435_88518_INTRON_1_308 5' exon 25.241737 128.378162 25.241737 104.136425 64.689081 1.810830981 -0.083977 138 100 SH21024 21024 YMR079W spliced 110.748436 239.827418 175.287927 2.243752005 -0.083985 3 53 SH12787 12787 MT COX1 COX1ai1 23.706742 116.705877 23.706742 93.999135 58.8529385 1.769768152 -0.083986 60 35 SH1732 1732 Leu7 5' flank 30.735499 117.402585 74.069042 1.869636728 -0.084004 90 73 SH1237 1237 Ile1 3' flank 24.915887 102.442402 63.6791445 1.80399722 -0.084004 201 8 SH120 120 Arg1 5' flank 28.517317 113.897575 71.207446 1.852525409 -0.084006 67 27 SH15106 15106 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 22.193889 103.582074 22.193889 82.388185 52.291037 1.718427255 -0.084014 22 7 SH5435 5435 snR31 3' 23.468196 92.157579 57.8128875 1.762024661 -0.084024 179 84 SH5390 5390 snR31 snR31 16 33 23.893243 95.457953 59.675598 1.77579678 -0.084025 172 21 SH12580 12580 MT_15S MT_15S 222.987951 630.220422 222.987951 408.232471 315.610211 2.499151046 -0.084027 178 102 SH13174 13174 MT COX1 Exon4 32.812425 152.355486 32.812425 120.543061 76.677743 1.884669321 -0.084028 57 12 SH19069 19069 YOR293W_15_867094_867848_INTRON_53_489 intron 23.157067 111.892671 23.157067 89.735604 56.4463355 1.751635753 -0.084035 163 101 SH19796 19796 Negative Control 25.550613 105.755184 65.6528985 1.817253904 -0.084044 211 91 SH16126 16126 YDR064W_4_579453_580447_INTRON_22_560 intron 24.555218 124.130634 24.555218 100.575416 62.565317 1.796333649 -0.084051 80 26 SH13055 13055 MT COX1 COX1ai2 27.916813 139.536047 27.916813 112.619234 70.2680235 1.846757738 -0.084056 94 10 SH21809 21809 copy of SH15489 24.23571 98.161654 61.198682 1.786742069 -0.084058 206 7 SH16899 16899 YGL226C-A_7_73156_72747_INTRON_22_170 intron 23.953327 118.887499 23.953327 95.934172 59.9437495 1.777743905 -0.084077 196 84 SH13165 13165 MT COX1 intronic 22.213296 103.74498 22.213296 82.531684 52.37249 1.719103223 -0.084083 91 59 SH1161 1161 His1 tRNA 26 40 26.02237 108.23499 67.12868 1.826908107 -0.084114 147 10 SH951 951 Gly1 tRNA 6 22 134.994498 276.402846 205.698672 2.313231488 -0.084136 122 38 SH6809 6809 snR52 5' 29.951324 116.217487 73.0844055 1.863824719 -0.084137 31 32 SH16155 16155 YDR129C_4_715372_713333_INTRON_22_132 5' exon 27.07382 136.877084 27.07382 110.803264 68.938542 1.838462094 -0.084138 23 25 SH3741 3741 Val4 5' flank 22.055553 81.419921 51.737737 1.713807429 -0.084141 165 45 SH8233 8233 snoRNA cluster 3; 3' 26.418243 134.789622 26.418243 109.371379 67.894811 1.831836584 -0.084182 127 15 SH8532 8532 snR19 / U1 RNA U1 156 172 27.233752 111.15483 69.194291 1.840070264 -0.084207 25 50 SH5763 5763 snR35 snR35 1 18 22.873914 87.55057 55.212242 1.742035383 -0.08421 115 6 SH20062 20062 YBR255C-A spliced 23.34162 91.202197 57.2719085 1.757941656 -0.084214 65 62 SH19819 19819 Negative Control 24.113134 97.207839 60.6604865 1.782905889 -0.084228 71 10 SH21126 21126 YNL130C spliced 23.133705 89.571476 56.3525905 1.750913885 -0.084232 127 55 SH1890 1890 Lys1 5' flank 167.337951 325.042419 246.190185 2.391270735 -0.084256 61 47 SH4934 4934 snR9 snR9 76 92 2672.212003 3603.657234 3137.934619 3.49664389 -0.084257 39 56 SH12986 12986 MT COX1 COX1ai2 22.896881 109.63648 22.896881 87.739599 55.31824 1.742868354 -0.084335 112 9 SH19310 19310 YPL198W_16_173151_174701_INTRON_12_420 intron 21.643672 99.198517 21.643672 78.554845 50.0992585 1.699831298 -0.084343 67 98 SH10648 10648 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 126 141 6860.772311 8238.068524 7549.420418 3.877913611 -0.084344 70 31 SH160 160 Arg2 5' flank 30.48002 117.036271 73.7581455 1.867809989 -0.084361 157 16 SH6581 6581 snR47 snR47 11 30 22.248429 82.808781 52.528605 1.720395867 -0.084412 187 75 SH7591 7591 snR189 snR189 26 42 57.297541 157.719213 107.508377 2.031442306 -0.084412 97 92 SH7131 7131 snR63 snR63 161 175 27.515819 111.777863 69.646841 1.842901423 -0.084418 144 10 SH12596 12596 MT_15S MT_15S 22.517521 106.355585 22.517521 84.838064 53.6777925 1.729794647 -0.084427 63 27 SH16081 16081 YDR025W_4_491510_492319_INTRON_46_384 intron 22.514992 106.334788 22.514992 84.819796 53.667394 1.729710507 -0.084438 157 6 SH6982 6982 snR60 5' - 10 -9 10 22.845841 87.354971 55.100406 1.741154799 -0.084442 121 82 SH15980 15980 YDL136W_4_217600_218367_INTRON_4_408 intron 24.517122 123.928342 24.517122 100.41122 62.464171 1.795630981 -0.084469 105 70 SH15477 15477 YBL091C-A_2_46858_46559_INTRON_35_122 intron 24.347317 122.439091 24.347317 99.091774 61.7195455 1.790422719 -0.084472 154 69 SH8682 8682 LSR1 / U2 RNA U2 51 68 30.917789 117.70389 74.3108395 1.871052168 -0.084474 129 44 SH20112 20112 YDL064W spliced 250.158384 449.013588 349.585986 2.543554015 -0.084478 192 27 SH6298 6298 snR42 snR42 271 285 30.747398 117.447645 74.0975215 1.869803681 -0.084482 183 76 SH1229 1229 Ile1 3' flank 25.752055 106.847427 66.299741 1.821511832 -0.08449 23 50 SH12860 12860 MT COX1 COX1ai1 25.000555 126.922768 25.000555 102.922213 63.961384 1.805917852 -0.084495 100 15 SH19012 19012 YOR182C_15_678792_678190_INTRON_4_414 intron 284.51441 784.229821 284.51441 500.715411 392.6149105 2.593966789 -0.084496 137 43 SH4423 4423 telomerase RNA telomerase 1151 1173 21.846773 79.98469 50.9157315 1.706851988 -0.08453 169 21 SH18157 18157 YLR426W_12_987057_988108_INTRON_81_151 intron 23.617594 115.977675 23.617594 93.360081 58.4888375 1.76707299 -0.084535 92 76 SH14551 14551 MT 21S rRNA 21S rRNA3 21.936596 101.551732 21.936596 80.615136 51.275866 1.709913004 -0.084539 67 66 SH17877 17877 YLR048W_12_242233_243350_INTRON_91_449 intron 23.791248 117.503169 23.791248 94.711921 59.2515845 1.772699969 -0.084551 154 73 SH18455 18455 YMR143W_13_551927_552902_INTRON_25_568 intron 35.282261 158.536129 35.282261 124.253868 79.7680645 1.901829054 -0.084553 167 22 SH14611 14611 MT 21S rRNA Sce1 endonuc 23.735015 117.011522 23.735015 94.276507 59.005761 1.770894416 -0.084581 72 2 SH13658 13658 MT ATP6 ATP6 24.468265 123.539039 24.468265 100.070774 62.2695195 1.794275515 -0.084586 116 37 SH4360 4360 telomerase RNA telomerase 836 848 29.726148 115.896841 72.8114945 1.862199945 -0.084589 46 52 SH3539 3539 Tyr2 5' flank 24.860859 102.203966 63.5324125 1.802995347 -0.084596 51 66 SH19169 19169 YPL079W_16_406631_407534_INTRON_12_432 intron 24.806991 125.731698 24.806991 101.924707 63.365849 1.801855258 -0.084603 11 62 SH1191 1191 Ile1 5' flank 24.290508 98.654413 61.4724605 1.788680597 -0.084623 158 92 SH20266 20266 YDR424C spliced 25.211465 104.032759 64.622112 1.810381148 -0.084641 145 42 SH12179 12179 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7781 7801 22.592462 85.428728 54.010595 1.732478962 -0.084648 214 35 SH665 665 Gln2 3' flank 25.71038 106.643521 66.1769505 1.820706751 -0.084664 28 69 SH2181 2181 Met2 tRNA 36 50 40.061961 131.673939 85.86795 1.933831095 -0.084686 94 5 SH13015 13015 MT COX1 COX1ai2 22.34281 104.881211 22.34281 83.538401 52.9406055 1.723788904 -0.0847 8 84 SH4422 4422 telomerase RNA telomerase 1146 1167 24.409839 99.617056 62.0134475 1.792485876 -0.084725 26 18 SH13370 13370 MT COX1 intronic 21.81235 100.575047 21.81235 79.762697 50.7875235 1.705757036 -0.084762 6 19 SH9240 9240 snR6 / U6 RNA U6 71 86 109.626433 238.23152 173.9289765 2.240371941 -0.084769 57 33 SH17348 17348 YIL018W_9_316766_317930_INTRON_5_404 intron 21.584973 98.766698 21.584973 78.181725 49.883349 1.697955603 -0.084769 175 98 SH16777 16777 YGL103W_7_310965_311925_INTRON_50_560 intron 26.019568 133.295695 26.019568 108.276127 67.1478475 1.827032095 -0.084771 214 71 SH20213 20213 YDR064W spliced 24.482073 100.201857 62.341965 1.794780487 -0.084785 122 34 SH8486 8486 snR19 / U1 RNA 5' 24.632925 101.03681 62.8348675 1.798200704 -0.084794 174 45 SH20060 20060 YBR255C-A spliced 24.867003 102.253933 63.560468 1.803187086 -0.084821 52 87 SH11627 11627 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5021 5038 5311.637406 6583.518052 5947.577729 3.774340127 -0.084863 44 69 SH17626 17626 YJR094W-A_10_608000_608553_INTRON_3_277 intron 24.689359 125.025246 24.689359 101.335887 63.012623 1.799427558 -0.084875 57 2 SH17663 17663 YKL006C-A_11_430270_429836_INTRON_37_177 5' exon 23.498062 114.966448 23.498062 92.468386 57.983224 1.763302359 -0.084875 111 26 SH10786 10786 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 816 836 145.216812 291.86256 218.539686 2.339530315 -0.084894 17 38 SH17123 17123 YHR010W_8_126513_127484_INTRON_32_592 intron 446.950717 1186.16299 446.950717 740.212273 593.581495 2.773480353 -0.084908 52 57 SH8858 8858 LSR1 / U2 RNA U2 931 946 1867.110717 2629.89818 2248.504449 3.351893751 -0.084908 94 13 SH21000 21000 YML085C spliced 28.070361 112.999207 70.534784 1.848403341 -0.084908 123 8 SH14698 14698 MT tRNA thr2 5' 22.920548 109.89833 22.920548 87.977782 55.449165 1.743895011 -0.084933 11 35 SH3416 3416 Trp1 5' flank 25.302706 104.537813 64.9202595 1.812380247 -0.084994 106 54 SH4347 4347 telomerase RNA telomerase 771 788 29.73745 115.938152 72.837801 1.862356826 -0.085016 138 56 SH8933 8933 snR17a / U3a 5' 22.451873 84.393271 53.422572 1.727724793 -0.085036 204 46 SH300 300 Arg4 3' flank 26.710889 110.064375 68.387632 1.834977566 -0.085049 12 45 SH3684 3684 Val3 5' flank 29.691039 115.869667 72.780353 1.862014158 -0.08507 3 42 SH1430 1430 Leu2 5' flank 24.158583 97.653347 60.905965 1.784659829 -0.085087 126 68 SH14736 14736 MT tRNA cys; tRNA his 3' 21.293816 96.501622 21.293816 76.207806 48.750811 1.687981845 -0.085148 173 50 SH19297 19297 YPL198W_16_173151_174701_INTRON_12_420 5' exon 24.698539 125.104346 24.698539 101.405807 63.052173 1.799700058 -0.085155 87 66 SH2893 2893 Pro8 5' flank - tRNA3 3 25.522797 105.703002 65.6128995 1.81698923 -0.08517 119 90 SH7386 7386 snR68 3' 30.810569 117.582288 74.1964285 1.870383001 -0.085174 104 83 SH1765 1765 Leu7 3' flank 29.220962 115.148207 72.1845845 1.858444461 -0.085191 96 16 SH19236 19236 YPL090C_16_378390_377286_INTRON_7_400 intron 24.004218 119.449891 24.004218 96.445673 60.2249455 1.779776416 -0.085205 109 22 SH9636 9636 RUF4 5' 22.972894 88.409176 55.691035 1.745785289 -0.085207 2 46 SH11953 11953 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6651 6666 751.577469 1168.275597 959.926533 2.982237996 -0.085243 171 29 SH10135 10135 RUF6 RUF6 521 536 24.807643 101.979678 63.3936605 1.80204583 -0.085248 114 44 SH5404 5404 snR31 snR31 86 98 28.122859 113.132102 70.6274805 1.848973714 -0.085252 26 42 SH17357 17357 YIL052C_9_257061_256224_INTRON_38_509 exon/intron 25.244134 128.499132 25.244134 104.254998 64.749566 1.811236862 -0.085275 156 26 SH2063 2063 Lys4 5' flank 33.366611 121.453578 77.4100945 1.888797598 -0.0853 200 28 SH1994 1994 Lys3 5' flank 26.327841 109.239538 67.7836895 1.831125204 -0.085343 197 73 SH9938 9938 RUF5-1 RUF5-1 496 512 23.79628 94.830811 59.3135455 1.773153885 -0.08537 137 38 SH13982 13982 MT COB intronic 25.913197 132.681565 25.913197 107.768368 66.8407825 1.825041526 -0.085379 14 40 SH14896 14896 MT tRNA Ile 5' / tRNA 25.255405 128.577848 25.255405 104.322443 64.788924 1.811500767 -0.08538 69 16 SH10255 10255 RUF6 3' 23.102995 89.438988 56.2709915 1.750284568 -0.085381 74 49 SH19731 19731 Negative Control 25.609537 106.174803 65.89217 1.81883381 -0.085381 14 46 SH17879 17879 YLR048W_12_242233_243350_INTRON_91_449 intron 25.328145 129.030782 25.328145 104.702637 65.015391 1.813016179 -0.085383 146 7 SH6925 6925 snR58 5' - 7 -14 7 22.550523 85.176521 53.863522 1.731294747 -0.085407 43 49 SH4642 4642 snR3 snR3 126 141 27.633106 112.096218 69.864662 1.844257562 -0.085516 42 36 SH13764 13764 MT COB intronic 23.114232 111.655928 23.114232 89.541696 56.327964 1.750724054 -0.085539 125 103 SH18444 18444 YMR142C_13_551206_550205_INTRON_5_406 intron 24.982581 126.895583 24.982581 102.913002 63.9477915 1.80582555 -0.085539 29 52 SH13611 13611 MT ATP8/AAP1 3' 22.651744 107.614625 22.651744 85.962881 54.3073125 1.734858311 -0.08555 78 36 SH16989 16989 YGR118W_7_726968_727725_INTRON_66_385 intron 23.755294 117.284047 23.755294 94.528753 59.1420235 1.77189618 -0.085554 5 52 SH15523 15523 YBR048W_2_332790_333771_INTRON_46_556 intron 25.867344 132.411678 25.867344 107.544334 66.705839 1.824163851 -0.08558 103 10 SH17977 17977 YLR211C_12_564531_563792_INTRON_19_77 intron 26.733673 135.87989 26.733673 110.146217 68.439945 1.835309652 -0.085595 118 40 SH18548 18548 YMR230W_13_732413_733140_INTRON_53_462 intron 23.807238 117.747142 23.807238 94.939904 59.373571 1.77359317 -0.085611 175 102 SH15100 15100 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 24.205519 121.284177 24.205519 98.078658 61.1420885 1.786340269 -0.085615 164 75 SH12916 12916 MT COX1 COX1ai2 24.452211 123.500402 24.452211 100.048191 62.250201 1.794140758 -0.08562 201 23 SH6279 6279 snR42 snR42 176 192 130.563572 270.007587 200.2855795 2.301649681 -0.085634 58 82 SH20968 20968 YML026C spliced 24.187855 97.941189 61.064522 1.785788962 -0.085642 141 53 SH17625 17625 YJR094W-A_10_608000_608553_INTRON_3_277 intron 90.607797 298.614438 90.607797 209.006641 149.807219 2.175532742 -0.085646 153 51 SH9903 9903 RUF5-1 RUF5-1 321 340 22.616348 85.700545 54.1584465 1.733666198 -0.085646 150 45 SH16908 16908 YGL232W_7_62074_63001_INTRON_58_115 intron 22.774236 108.688087 22.774236 86.913851 54.8440435 1.739129467 -0.08566 116 98 SH15497 15497 YBL092W_2_45639_46364_INTRON_1_333 intron 25.272034 128.705686 25.272034 104.433652 64.852843 1.811929019 -0.085677 132 41 SH19432 19432 YPR132W_16_794960_795762_INTRON_66_430 intron 22.379354 105.28028 22.379354 83.900926 53.14014 1.725422694 -0.085686 139 28 SH2170 2170 Met2 5' flank 25.207336 104.098973 64.6531545 1.810589719 -0.085716 129 43 SH18425 18425 YMR142C_13_551206_550205_INTRON_5_406 5' exon 23.067795 111.264254 23.067795 89.196459 56.132127 1.749211499 -0.085727 126 71 SH21228 21228 YOR234C spliced 31.647894 118.867519 75.2577065 1.876550979 -0.08575 181 69 SH14302 14302 MT VAR1 includes 5’ processing site VAR1 21.940678 101.68355 21.940678 80.742872 51.341775 1.710470879 -0.085756 71 58 SH15560 15560 YBR082C_2_407127_406586_INTRON_48_142 intron/exon 34.643531 157.0198 34.643531 123.376269 79.0099 1.897681512 -0.085768 114 42 SH21495 21495 copy of SH2288 30.011155 116.401068 73.2061115 1.864547339 -0.085771 183 31 SH20237 20237 YDR305C spliced 23.908462 95.751742 59.830102 1.776919743 -0.085804 18 13 SH17919 17919 YLR061W_12_263195_263949_INTRON_13_401 3' exon 25.713207 131.472289 25.713207 106.759082 66.2361445 1.821095045 -0.085867 44 92 SH7124 7124 snR63 snR63 126 143 26.737035 110.170339 68.453687 1.835396845 -0.085882 111 14 SH13678 13678 MT ORF 5 (hypothetical) 5' 22.454933 105.948675 22.454933 84.493742 53.4743375 1.728145413 -0.08591 74 71 SH18371 18371 YMR079W_13_424988_426058_INTRON_10_165 intron 23.876577 118.389412 23.876577 95.512835 59.694706 1.775935818 -0.085918 153 10 SH16644 16644 YFR031C-A_6_221405_220494_INTRON_5_151 5' exon 27.162436 137.265729 27.162436 111.103293 69.1328645 1.839684552 -0.08596 207 9 SH5396 5396 snR31 snR31 46 62 25.997744 108.262935 67.1303395 1.826918844 -0.085968 66 49 SH6869 6869 snR56 5' 25.216043 104.165688 64.6908655 1.810842962 -0.085976 147 56 SH17568 17568 YJL189W_10_75932_76473_INTRON_7_392 intron 22.765246 108.640989 22.765246 86.875743 54.8204945 1.738942949 -0.086003 48 78 SH14631 14631 MT 21S rRNA Sce1 endonuc 25.592125 130.727745 25.592125 106.13562 65.8638725 1.818647262 -0.086006 62 34 SH10045 10045 RUF6 RUF6 71 90 22.757863 86.823653 54.790758 1.738707309 -0.086055 52 93 SH9291 9291 RUF1 RUF1 31 47 36.393021 126.102788 81.2479045 1.909812169 -0.086077 8 87 SH14965 14965 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 25.763064 131.802514 25.763064 107.03945 66.401257 1.822176301 -0.08609 14 102 SH5258 5258 snR30 snR30 141 155 27.358814 111.538337 69.4485755 1.841663342 -0.086108 107 41 SH12974 12974 MT COX1 COX1ai2 23.860677 118.267741 23.860677 95.407064 59.6338705 1.775492998 -0.086111 165 101 SH19355 19355 YPL249C-A_16_76239_75699_INTRON_17_254 intron 23.377301 114.033639 23.377301 91.656338 57.5168195 1.759794863 -0.086122 82 37 SH19018 19018 YOR182C_15_678792_678190_INTRON_4_414 intron 21.875651 101.191729 21.875651 80.316078 51.0958645 1.708385751 -0.086125 143 68 SH333 333 Arg5 tRNA 1 13 32.592966 120.334612 76.463789 1.883455815 -0.086143 94 59 SH10066 10066 RUF6 RUF6 176 192 29.537922 115.693525 72.6157235 1.861030669 -0.086148 83 34 SH7844 7844 snoRNA cluster1 snR74 78.747928 268.487694 78.747928 190.739766 134.743847 2.129508943 -0.086165 168 90 SH13893 13893 MT COB intronic 76.779598 263.490189 76.779598 187.710591 132.2450945 2.121379571 -0.08618 14 7 SH10979 10979 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1781 1799 21447.12717 22463.5828 21955.35499 4.341540463 -0.086182 129 65 SH9840 9840 RUF5-1 RUF5-1 6 27 24.112228 97.395683 60.7539555 1.783574559 -0.086182 209 24 SH19596 19596 AEP2/ATP13 2.1 30.071485 116.517551 73.294518 1.865071493 -0.086199 213 51 SH10214 10214 RUF6 RUF6 916 935 23.994753 96.478109 60.236431 1.779859232 -0.086286 103 24 SH18256 18256 YML056C_13_164176_162194_INTRON_461_868 5' exon 58.439062 217.071516 58.439062 159.632454 109.035758 2.037568947 -0.086301 154 54 SH20231 20231 YDR139C spliced 28.897976 114.70575 71.801863 1.856135713 -0.08631 52 49 SH20313 20313 YER007C-A spliced 38.696441 129.664225 84.180333 1.925210639 -0.086324 141 18 SH8913 8913 LSR1 / U2 RNA 3' 24.844424 102.257207 63.5508155 1.803121128 -0.086325 57 99 SH14999 14999 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 22.404414 105.551862 22.404414 84.147448 53.275931 1.726531048 -0.086331 78 81 SH14089 14089 MT COB Cytbi4 24.237691 121.650024 24.237691 98.412333 61.325012 1.787637642 -0.086387 87 70 SH6035 6035 snR37 snR37 91 107 77.1729 188.343578 132.758239 2.123061483 -0.086416 51 102 SH20674 20674 YIL106W spliced 24.218168 98.261411 61.2397895 1.787033689 -0.086431 119 60 SH10732 10732 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 546 559 27.115188 111.030025 69.0726065 1.839305845 -0.08646 203 9 SH14694 14694 MT 21S rRNA 3' 43.86302 180.451542 43.86302 137.588522 90.725771 1.957730668 -0.08646 96 9 SH14531 14531 MT 21S rRNA 21S rRNA3 22.443905 105.903668 22.443905 84.459763 53.451834 1.727962611 -0.086474 64 88 SH6126 6126 snR39B 5' 72.11423 180.553584 126.333907 2.101519927 -0.086488 89 60 SH18814 18814 YNL302C_14_62942_61957_INTRON_21_571 intron 31.348892 148.814841 31.348892 118.465949 74.9074205 1.874524842 -0.086507 89 34 SH10389 10389 RUF7 3' 26.650968 110.02118 68.336074 1.834650024 -0.086558 15 88 SH4350 4350 telomerase RNA telomerase 786 808 37.523886 127.890329 82.7071075 1.917542833 -0.086575 33 26 SH19677 19677 SIR1 2.4 23.654542 93.845945 58.7502435 1.769009671 -0.086608 5 68 SH17101 17101 YHL001W_8_104270_105084_INTRON_130_527 intron 22.067224 102.772813 22.067224 81.705589 51.8864065 1.715053594 -0.08661 125 50 SH11704 11704 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5406 5419 61.340676 164.047061 112.6938685 2.051900287 -0.086611 18 88 SH3050 3050 Ser3 5' flank 25.967385 108.162993 67.065189 1.826497153 -0.086673 168 95 SH7997 7997 snoRNA cluster 2 intergenic 23.335097 113.722141 23.335097 91.387044 57.3610705 1.758617248 -0.086707 187 45 SH16451 16451 YER074W-A_0_5_307649_INTRON_95_196 5' exon 36.975972 163.028433 36.975972 127.052461 82.0142165 1.91388914 -0.086719 28 14 SH20191 20191 YDL219W spliced 24.138462 97.658288 60.898375 1.784605704 -0.086728 27 100 SH1340 1340 Ile3 tRNA-intron 81 97 26.51596 109.734956 68.125458 1.833309435 -0.086737 3 3 SH20327 20327 YER074W spliced 28.901313 114.734741 71.818027 1.85623347 -0.086738 100 82 SH21901 21901 copy of SH19201 22.270738 83.173157 52.7219475 1.721991444 -0.086746 98 95 SH10733 10733 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 551 568 23.57002 93.205708 58.387864 1.766322588 -0.086775 209 21 SH4179 4179 telomerase RNA 5' 23.506087 92.718438 58.1122625 1.764267784 -0.086855 175 87 SH16240 16240 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 24.072189 120.225551 24.072189 97.153362 60.6127755 1.782564171 -0.086929 75 102 SH6714 6714 snR49 snR49 96 115 435.119586 724.080816 579.600201 2.763128527 -0.08694 190 82 SH114 114 Arg1 5' flank 24.258815 98.637919 61.448367 1.788510346 -0.086955 11 86 SH20502 20502 YGR001C spliced 27.826865 112.599775 70.21332 1.846419509 -0.086963 40 95 SH55 55 Ala2 5' flank 25.338061 104.886232 65.1121465 1.813662013 -0.086986 73 91 SH14764 14764 MT ORF11; tRNA Leu; tRNA Gln ORF11 22.758418 108.671052 22.758418 86.912634 54.835526 1.739062014 -0.086987 126 10 SH18430 18430 YMR142C_13_551206_550205_INTRON_5_406 intron 28.937652 142.744858 28.937652 114.807206 71.872429 1.856562323 -0.087017 116 3 SH7009 7009 snR60 3' 21.372537 76.893369 49.132953 1.691372867 -0.087034 2 6 SH21200 21200 YOL127W spliced 26.619373 109.979805 68.299589 1.83441809 -0.087038 96 41 SH18227 18227 YML026C_13_223828_222987_INTRON_48_448 intron 25.849401 132.423146 25.849401 107.573745 66.711573 1.824201181 -0.087046 84 44 SH6711 6711 snR49 snR49 81 97 27.512716 111.927218 69.719967 1.843357173 -0.087047 205 86 SH15651 15651 YBR189W_2_604466_605466_INTRON_8_420 intron 24.625889 124.806245 24.625889 101.180356 62.9031225 1.798672204 -0.087064 48 80 SH18072 18072 YLR344W_12_819312_820142_INTRON_20_466 intron 23.537053 115.51517 23.537053 92.978117 58.257585 1.765352477 -0.087066 191 16 SH20489 20489 YGL232W spliced 23.76493 94.751175 59.2580525 1.772747374 -0.087069 23 80 SH882 882 Glu3 5' flank 35.15831 124.214353 79.6863315 1.901383834 -0.08708 99 21 SH21131 21131 YNL130C spliced 35.699946 125.076088 80.388017 1.905191316 -0.087094 99 78 SH4799 4799 snR5 snR5 166 183 22.487179 84.848598 53.6678885 1.729714509 -0.087147 160 2 SH3234 3234 Thr1 tRNA 26 42 24.631555 101.218869 62.925212 1.798824687 -0.087178 195 54 SH9187 9187 snR7 U5 RNA 206-215 + 3' 206 94.658856 215.476495 155.0676755 2.190521277 -0.087185 51 20 SH15245 15245 MT tRNA fMet tRNA 22.847207 109.464698 22.847207 87.617491 55.232349 1.742193514 -0.087195 35 63 SH16165 16165 YDR139C_4_733917_733611_INTRON_150_222 5' exon 25.391857 129.5786 25.391857 105.186743 65.2893 1.814842012 -0.087215 33 8 SH19243 19243 YPL090C_16_378390_377286_INTRON_7_400 intron 22.341685 105.092625 22.341685 83.75094 53.0463125 1.724655199 -0.087226 89 8 SH9427 9427 RUF2 5' 23.906775 95.879371 59.893073 1.777376596 -0.087237 105 25 SH20278 20278 YDR450W spliced 23.085753 89.481733 56.283743 1.750382971 -0.087278 134 35 SH376 376 Asn1 5' flank 21.667283 78.952769 50.310026 1.701654542 -0.087286 74 82 SH10418 10418 RUF8 RUF8 16 33 30.078459 116.592414 73.3354365 1.865313881 -0.087338 91 60 SH8005 8005 snoRNA cluster 2 intergenic 21.956164 101.941321 21.956164 80.985157 51.4706605 1.711559741 -0.087389 141 5 SH18203 18203 YML024W_13_225889_226697_INTRON_4_401 intron 21.554899 98.736925 21.554899 78.182026 49.8684625 1.697825979 -0.087413 210 70 SH1069 1069 Gly3 3' flank 22.756697 86.939092 54.8478945 1.739159961 -0.087424 51 19 SH20900 20900 YLR306W spliced 23.858811 95.521882 59.6903465 1.7759041 -0.087433 118 92 SH16294 16294 YDR450W_4_1359912_1360787_INTRON_48_482 intron 25.484106 130.173945 25.484106 105.689839 65.5869725 1.816817584 -0.087455 161 72 SH2271 2271 Phe2 5' flank 22.369291 83.980593 53.174942 1.725707025 -0.087461 190 72 SH6807 6807 snR52 5' 25.442461 105.472088 65.4572745 1.815957918 -0.087461 98 81 SH9523 9523 RUF3 RUF3 1 18 24.420632 99.98455 62.202591 1.793808475 -0.087469 177 88 SH5527 5527 snR33 5' 52.584815 150.882327 101.733571 2.007464289 -0.087472 193 64 SH20221 20221 YDR092W spliced 27.366762 111.637217 69.5019895 1.841997236 -0.087486 90 98 SH6072 6072 snR37 snR37 276 292 25.718703 106.923825 66.321264 1.821652795 -0.087488 182 54 SH16781 16781 YGL103W_7_310965_311925_INTRON_50_560 intron 22.702775 108.234585 22.702775 86.53181 54.6172925 1.737330167 -0.087513 105 29 SH14841 14841 MT tRNA Asp tRNA Asp 198.924479 571.051284 198.924479 373.126805 286.025642 2.456404969 -0.087553 151 86 SH8972 8972 snR17a / U3a U3a 146 162 27.773392 112.522404 70.147898 1.846014662 -0.087594 22 81 SH7146 7146 snR63 snR63 236 253 41.212433 133.629392 87.4209125 1.941615335 -0.087595 139 95 SH6479 6479 snR45 3' 22.626045 85.959202 54.2926235 1.734740828 -0.087699 90 91 SH611 611 Gln1 3' flank 22.264263 83.209254 52.7367585 1.722113432 -0.087721 168 27 SH9583 9583 RUF3 RUF3 301 322 22.482217 84.862305 53.672261 1.729749891 -0.087728 98 36 SH12152 12152 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7646 7664 49.91818 146.884038 98.401109 1.992999993 -0.087746 143 31 SH13109 13109 MT COX1 COX1ai3 23.457775 114.887759 23.457775 92.429984 57.9438795 1.763007569 -0.087749 169 74 SH13652 13652 MT ATP6 ATP6 24.215228 121.586723 24.215228 98.371495 61.2933615 1.78741344 -0.087754 106 42 SH20635 20635 YHR141C spliced 28.052297 113.133481 70.592889 1.848760956 -0.08779 208 94 SH20975 20975 YML034W spliced 32.459575 120.232283 76.345929 1.882785884 -0.087858 96 36 SH13963 13963 MT COB Cytbi3 21.992325 102.272702 21.992325 81.280377 51.636351 1.712955544 -0.087879 177 46 SH8462 8462 snoRNA cluster 5 snR128/3' 24.973379 127.028175 24.973379 103.054796 64.0140875 1.806275559 -0.087888 124 70 SH17951 17951 YLR185W_12_522665_523290_INTRON_8_366 5' exon 40.065892 170.962612 40.065892 131.89672 85.981306 1.934404037 -0.087917 74 25 SH21386 21386 Phe1_5 spliced 25.347089 105.010278 65.1786835 1.814105584 -0.087918 161 63 SH20783 20783 YKL006W spliced 833.961668 1283.30846 1058.635064 3.024746275 -0.087923 165 49 SH12601 12601 MT_15S MT_15S 28.368366 141.185866 28.368366 113.8175 71.092933 1.851826432 -0.087926 200 25 SH9850 9850 RUF5-1 RUF5-1 56 73 25.997663 108.429365 67.213514 1.827456601 -0.087931 86 74 SH21219 21219 YOR122C spliced 24.443433 100.215639 62.329536 1.794693894 -0.087937 42 13 SH5597 5597 snR34 5' 22.227619 82.959371 52.593495 1.720932032 -0.087985 89 18 SH21607 21607 copy of SH6883 23.774651 94.916301 59.345476 1.773387618 -0.087985 74 65 SH15937 15937 YDL115C_4_255042_253994_INTRON_1_88 intron 24.268145 122.089945 24.268145 98.8218 61.5449725 1.789192582 -0.088035 162 65 SH21069 21069 YMR225C spliced 24.362323 99.57743 61.9698765 1.792180631 -0.08806 135 66 SH9468 9468 RUF2 RUF2 181 200 25.204925 104.278872 64.7418985 1.811185431 -0.08807 183 28 SH2598 2598 Pro3 5' flank 25.855973 107.696489 66.776231 1.824621903 -0.08809 92 91 SH20066 20066 YBR230C spliced 24.209441 98.360012 61.2847265 1.787352252 -0.088097 138 54 SH14143 14143 MT COB intronic 26.50425 135.294115 26.50425 109.789865 68.1470575 1.833447108 -0.088122 25 95 SH19065 19065 YOR293W_15_867094_867848_INTRON_53_489 intron 25.601761 130.967563 25.601761 106.365802 65.9837815 1.819437201 -0.088161 212 43 SH21545 21545 copy of SH4254 24.501841 100.625892 62.5638665 1.796323581 -0.088195 11 95 SH18360 18360 YMR033W_13_337787_339276_INTRON_31_116 intron/exon 25.659719 131.334806 25.659719 106.675087 66.167403 1.820644089 -0.088219 174 73 SH18140 18140 YLR406C_12_931752_931062_INTRON_58_406 intron 33.990376 155.549756 33.990376 122.55938 78.274878 1.893622399 -0.088223 107 37 SH13814 13814 MT COB Cytbi2 27.410026 138.185274 27.410026 111.775248 69.592637 1.842563293 -0.088232 195 87 SH10464 10464 RUF8 RUF8 246 267 22.372997 84.076845 53.224921 1.726115026 -0.088236 179 25 SH17733 17733 YKL156W_11_158616_159214_INTRON_4_353 intron 22.960468 110.55451 22.960468 88.594042 55.777255 1.746457137 -0.088248 55 26 SH6676 6676 snR49 5' 24.257353 98.764645 61.510999 1.78895278 -0.088321 172 64 SH16536 16536 YER131W_5_423587_424307_INTRON_1_361 intron 22.056581 102.839482 22.056581 81.782901 51.919741 1.715332517 -0.088461 201 77 SH1557 1557 Leu4 5' flank 23.624849 93.794586 58.7097175 1.768709991 -0.088474 51 12 SH8520 8520 snR19 / U1 RNA U1 96 113 22.713346 86.703363 54.7083545 1.738053652 -0.088508 32 30 SH14110 14110 MT COB intronic 22.850765 109.616855 22.850765 87.76609 55.3084275 1.742791311 -0.088514 153 84 SH15811 15811 YDL061C_4_341182_340627_INTRON_1_408 intron 25.640127 131.238476 25.640127 106.598349 66.119238 1.82032784 -0.088532 176 3 SH14489 14489 MT 21S rRNA 21S rRNA3 23.62166 116.397658 23.62166 93.775998 58.698829 1.768629437 -0.088539 34 12 SH18834 18834 YNL302C_14_62942_61957_INTRON_21_571 intron 24.11129 120.738617 24.11129 97.627327 60.8693085 1.784398368 -0.088571 8 104 SH20229 20229 YDR129C spliced 23.134468 89.985459 56.5599635 1.752509121 -0.088576 59 13 SH12038 12038 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7076 7096 20.898712 73.821431 47.3600715 1.675412349 -0.088579 66 104 SH19513 19513 ACT1 31.480279 118.782614 75.1314465 1.87582175 -0.088611 206 56 SH11115 11115 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2461 2478 525.453861 854.569633 690.011747 2.838856484 -0.088623 27 99 SH21454 21454 copy of SH463 26.529704 109.875265 68.2024845 1.833800196 -0.088625 140 15 SH13720 13720 MT tRNAGlu (and 5' processing site for COB) 3' 22.642943 107.818661 22.642943 86.175718 54.4093305 1.735673382 -0.088663 165 60 SH5284 5284 snR30 snR30 271 288 22.404056 84.350259 53.3771575 1.727355443 -0.088663 167 45 SH17304 17304 YHR203C_8_505526_504472_INTRON_15_283 intron 26.515542 135.361824 26.515542 109.846282 68.180912 1.833662806 -0.088663 156 80 SH19522 19522 ACT1 23.087311 89.625565 56.356438 1.750943536 -0.088683 134 28 SH19508 19508 ACT1 56.759608 157.252181 107.0058945 2.029407702 -0.08869 159 13 SH1950 1950 Lys2 5' flank 22.587584 85.75581 54.171697 1.733772441 -0.088717 31 54 SH19891 19891 Positive Control 7 33.031099 121.151546 77.0913225 1.887005496 -0.088723 111 63 SH16708 16708 YGL031C_7_438393_437938_INTRON_1_456 intron 26.36041 134.877048 26.36041 109.516638 67.938524 1.832116107 -0.088878 61 59 SH10972 10972 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1746 1763 13043.94328 14530.06664 13787.00496 4.139469932 -0.088889 156 46 SH20473 20473 YGL189C spliced 24.887522 102.687844 63.787683 1.804736827 -0.088889 95 90 SH5878 5878 snR35 3' 26.046564 108.769655 67.4081095 1.828712147 -0.088897 170 49 SH18230 18230 YML026C_13_223828_222987_INTRON_48_448 intron 24.550536 124.489524 24.550536 100.938988 62.744762 1.797577476 -0.088957 113 30 SH18981 18981 YOR096W_15_505793_506766_INTRON_145_545 intron 22.754213 108.815777 22.754213 87.061564 54.9078885 1.739634743 -0.08898 207 21 SH6414 6414 snR45 5' 36.071077 125.782132 80.9266045 1.908091319 -0.088995 169 90 SH7004 7004 snR60 101-104 + 3' 101 31.668177 119.085614 75.3768955 1.877238246 -0.089018 144 21 SH9376 9376 RUF1 RUF1 456 472 39.782369 131.533048 85.6577085 1.932766452 -0.089028 182 19 SH3286 3286 Thr2 tRNA 31 43 31.614362 119.006447 75.3104045 1.87685498 -0.089032 67 30 SH13488 13488 MT COX1 intronic 24.241407 121.950946 24.241407 98.709539 61.475473 1.788701879 -0.089034 105 80 SH6180 6180 snR40 5' 27.589142 112.210771 69.8999565 1.844476905 -0.089035 72 94 SH1721 1721 Leu7 5' flank 28.287491 113.712338 70.9999145 1.851257826 -0.089044 144 47 SH3268 3268 Thr2 5' flank 24.28877 99.089134 61.688952 1.790207392 -0.089046 40 72 SH2382 2382 Phe4 5' flank 24.099479 97.583928 60.8417035 1.784201365 -0.089074 171 7 SH20538 20538 YGR183C spliced 22.765227 87.156983 54.961105 1.740055456 -0.089094 175 94 SH17674 17674 YKL006C-A_11_430270_429836_INTRON_37_177 3' exon 23.989995 119.709409 23.989995 96.719414 60.3547045 1.780711128 -0.0891 41 18 SH3126 3126 Ser4 tRNA 36 53 24.475655 100.562148 62.5189015 1.796011339 -0.08911 132 101 SH15257 15257 MT 9S rRNA 5' 21.997965 102.420804 21.997965 81.422839 51.710402 1.713577914 -0.089129 79 4 SH15395 15395 YBL050W_2_125087_126081_INTRON_31_146 5' exon 22.99695 110.95794 22.99695 88.96099 55.97897 1.748024903 -0.089135 164 70 SH15860 15860 YDL079C_4_314747_312950_INTRON_413_704 intron 40.537792 172.244154 40.537792 132.706362 86.622077 1.937628593 -0.089166 183 6 SH13760 13760 MT COB intronic 24.048576 120.238406 24.048576 97.18983 60.619203 1.782610222 -0.08917 32 38 SH10062 10062 RUF6 RUF6 156 177 24.736822 101.925193 63.3310075 1.801616397 -0.089172 151 55 SH17668 17668 YKL006C-A_11_430270_429836_INTRON_37_177 intron 22.776204 109.026564 22.776204 87.25036 55.013282 1.740467555 -0.089187 211 56 SH18463 18463 YMR143W_13_551927_552902_INTRON_25_568 intron 23.941073 119.28291 23.941073 96.341837 60.141455 1.779173931 -0.089188 181 77 SH20094 20094 YDL029W spliced 27.734194 112.534181 70.1341875 1.84592977 -0.089206 201 50 SH4305 4305 telomerase RNA telomerase 561 578 24.313892 99.311499 61.8126955 1.791077683 -0.089255 98 98 SH15901 15901 YDL083C_4_307788_306925_INTRON_25_456 intron 25.309721 129.237446 25.309721 104.927725 65.118723 1.813705875 -0.089292 76 2 SH17065 17065 YGR214W_7_920570_921783_INTRON_91_545 intron 26.302155 134.714708 26.302155 109.412553 67.857354 1.831596921 -0.089302 179 26 SH2777 2777 Pro6 5' flank 25.127692 103.976454 64.552073 1.809910194 -0.089312 9 87 SH10893 10893 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1351 1370 31648.31448 31700.59988 31674.45718 4.500709181 -0.089335 94 79 SH17238 17238 YHR079C-A_8_262554_262193_INTRON_114_199 exon/intron 26.604253 135.686706 26.604253 110.082453 68.343353 1.834696282 -0.089364 151 25 SH20717 20717 YJL136C spliced 71.0572 179.217417 125.1373085 2.09738681 -0.089368 194 56 SH9600 9600 RUF3 RUF3 386 405 26.048597 108.822947 67.435772 1.828890334 -0.089396 181 62 SH915 915 Glu3 3' flank 22.063095 81.914034 51.9885645 1.715907826 -0.08949 76 40 SH9338 9338 RUF1 RUF1 266 283 27.558672 112.172803 69.8657375 1.844264248 -0.089504 144 12 SH7052 7052 snR62 snR62 51 70 26.799167 110.519514 68.6593405 1.836699628 -0.089519 176 86 SH14271 14271 MT VAR1 includes 5’ processing site VAR1 24.034675 120.150707 24.034675 97.116032 60.5753535 1.782295957 -0.089534 147 22 SH6016 6016 snR37 5' - 12 -4 12 31.15953 118.356176 74.757853 1.87365682 -0.08954 23 12 SH17768 17768 YKL180W_11_109271_110131_INTRON_310_615 5' exon 25.27177 129.021329 25.27177 104.749559 65.0106645 1.812984605 -0.089544 47 41 SH13115 13115 MT COX1 COX1ai3 22.766905 108.981157 22.766905 87.214252 54.9905785 1.740288288 -0.089579 67 49 SH9101 9101 snR14 / U4 RNA U4 121 140 25.282856 104.811962 65.047409 1.813230002 -0.089596 133 35 SH15213 15213 MT COX3 cox3 21.548194 98.856915 21.548194 78.308721 49.9284575 1.698348149 -0.089608 118 11 SH13485 13485 MT COX1 intronic 24.824355 126.240735 24.824355 102.41638 63.6203675 1.803596173 -0.089609 171 18 SH11129 11129 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2531 2544 8302.031522 9772.923786 9037.477654 3.956047236 -0.089615 12 49 SH12799 12799 MT COX1 COX1ai1 29.634076 144.671461 29.634076 116.037385 72.8357305 1.86234448 -0.08963 37 82 SH20239 20239 YDR305C spliced 25.391646 105.385809 65.3887275 1.815502886 -0.089639 58 59 SH21491 21491 copy of SH2039 27.846036 112.805941 70.3259885 1.847115845 -0.089719 91 84 SH6475 6475 snR45 3' 22.440167 84.721024 53.5805955 1.729007536 -0.089747 148 83 SH2758 2758 Pro5 3' flank 23.234588 90.886896 57.060742 1.756337415 -0.089772 4 54 SH5305 5305 snR30 snR30 376 393 23.538252 93.253918 58.396085 1.766383732 -0.089856 48 13 SH6905 6905 snR56 3' 22.41227 84.518861 53.4655655 1.728074165 -0.089864 87 78 SH15247 15247 MT tRNA fMet tRNA 22.409052 105.903809 22.409052 84.494757 53.4519045 1.727963184 -0.089868 201 20 SH20867 20867 YLR093C spliced 23.359693 91.873683 57.616688 1.76054829 -0.08987 28 61 SH5459 5459 snR32 5' 22.529691 85.416576 53.9731335 1.732177632 -0.08988 27 55 SH15455 15455 YBL087C_2_60732_59815_INTRON_43_546 intron 26.635839 135.818099 26.635839 110.18226 68.4090495 1.835113556 -0.089883 151 50 SH10907 10907 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1421 1439 25833.12705 26524.33092 26178.72898 4.417948557 -0.089919 110 103 SH7641 7641 snoRNA cluster1 5' 1 20 23.951466 96.497589 60.2245275 1.779773401 -0.089933 91 58 SH21730 21730 copy of SH12130 24.03366 97.149166 60.591413 1.78241108 -0.089947 189 54 SH4973 4973 snR9 3' 34.079458 122.799512 78.439485 1.894534734 -0.090018 50 60 SH17079 17079 YGR225W_7_945138_946919_INTRON_1184_1276 3' exon 26.009172 133.678946 26.009172 108.669774 67.339473 1.828269713 -0.09004 201 68 SH20604 20604 YHR077C spliced 48.611554 145.078181 96.8448675 1.986076609 -0.09004 49 62 SH14650 14650 MT 21S rRNA 21S rRNA4 213.793052 608.766822 213.793052 395.97377 304.883411 2.484133795 -0.090092 92 51 SH6878 6878 snR56 snR56 21 38 135.060429 277.50413 206.2822795 2.314461922 -0.090134 199 101 SH15143 15143 MT tRNA Thr1 reverse complement 5' 23.220791 113.033187 23.220791 90.812396 57.0165935 1.756001266 -0.090134 142 19 SH19837 19837 Negative Control 27.010562 111.018594 69.014578 1.838940837 -0.090138 138 24 SH2324 2324 Phe3 5' flank 25.023616 103.501717 64.2626665 1.807958742 -0.090166 111 22 SH15473 15473 YBL091C-A_2_46858_46559_INTRON_35_122 5' exon 128.197022 394.378299 128.197022 267.181277 197.6891495 2.295982833 -0.090192 203 48 SH2778 2778 Pro6 5' flank 26.611841 110.14865 68.3802455 1.834930656 -0.090211 131 52 SH943 943 Gly1 5' flank 27.257489 111.564299 69.410894 1.841427638 -0.090262 189 97 SH11250 11250 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3136 3154 7980.507734 9443.761141 8712.134438 3.940124568 -0.090273 63 3 SH13167 13167 MT COX1 intronic 24.830982 126.336654 24.830982 102.505672 63.668327 1.803923438 -0.09029 188 23 SH10367 10367 RUF7 RUF7 446 462 25.858912 107.899169 66.8790405 1.825290034 -0.090304 108 28 SH18241 18241 YML026C_13_223828_222987_INTRON_48_448 intron 22.08525 103.224465 22.08525 82.139215 52.1122325 1.716939679 -0.09031 143 17 SH8604 8604 snR19 / U1 RNA U1 516 531 96.083203 218.071556 157.0773795 2.196113647 -0.09037 72 78 SH12998 12998 MT COX1 COX1ai2 28.017272 140.232581 28.017272 113.215309 70.6162905 1.8489049 -0.090404 56 12 SH20265 20265 YDR424C spliced 25.244279 104.676719 64.960499 1.812649352 -0.09041 113 63 SH715 715 Gln3 3' flank 25.979364 108.545908 67.262636 1.827773883 -0.090434 24 25 SH5068 5068 snR11 5' 22.025414 81.726209 51.8758115 1.714964903 -0.090452 190 54 SH21567 21567 copy of SH5227 27.799579 112.751026 70.2753025 1.846802724 -0.090474 49 9 SH10507 10507 RUF8 RUF8 461 482 22.803872 87.586682 55.195277 1.741901917 -0.090522 98 12 SH15192 15192 MT COX3 cox3 26.473668 135.340522 26.473668 109.866854 68.170261 1.833594957 -0.090599 191 9 SH18301 18301 YML073C_13_124172_123227_INTRON_16_430 intron 46.55625 187.530599 46.55625 141.974349 94.2652995 1.974351852 -0.090628 161 48 SH4731 4731 snR4 3' 22.302098 83.74974 53.025919 1.724488204 -0.090634 135 97 SH14400 14400 MT 21S rRNA 21S rRNA3 24.12375 121.061711 24.12375 97.937961 61.0308555 1.785549458 -0.090681 88 83 SH21138 21138 YNL162W spliced 25.921529 108.265545 67.093537 1.826680687 -0.090728 68 58 SH12087 12087 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7321 7338 32.465056 120.409917 76.4374865 1.883306398 -0.090733 32 3 SH502 502 Asp2 71-72 + 3' flank 71 88 22.592193 85.976121 54.284157 1.734673098 -0.090776 57 60 SH18965 18965 YOL127W_15_80347_81189_INTRON_14_427 3' exon 25.937934 133.294354 25.937934 108.35642 67.147177 1.827027759 -0.090778 121 88 SH7656 7656 snoRNA cluster1 5' 24.27853 122.466318 24.27853 99.187788 61.733159 1.790518501 -0.090821 189 50 SH9852 9852 RUF5-1 RUF5-1 66 83 25.901871 108.169933 67.035902 1.826307457 -0.090824 134 6 SH9964 9964 RUF5-1 RUF5-1 626 642 25.510583 106.111245 65.810914 1.818297922 -0.090854 72 61 SH11223 11223 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3001 3023 24.66549 101.691825 63.1786575 1.800570393 -0.090902 153 62 SH20408 20408 YFR032C-A spliced 50.116547 147.425989 98.771268 1.994630629 -0.090902 69 10 SH14582 14582 MT 21S rRNA intronic 23.360441 114.337607 23.360441 91.977166 57.6688035 1.760940941 -0.090906 26 59 SH21814 21814 copy of SH15699 44.784695 139.318982 92.0518385 1.964032467 -0.090912 8 100 SH8101 8101 snoRNA cluster 3; 5' 45.849038 185.785162 45.849038 140.936124 93.392581 1.970312378 -0.090953 128 34 SH14229 14229 MT ATP9 ATP9/3 23.121281 112.22747 23.121281 90.106189 56.613735 1.752921808 -0.090958 188 59 SH156 156 Arg1 3' flank 24.843788 102.626606 63.735197 1.804379333 -0.090962 47 99 SH4958 4958 snR9 3' 23.613114 93.944738 58.778926 1.769221646 -0.090983 208 67 SH1684 1684 Leu6 5' flank - tRNA2 2 25.519674 106.170319 65.8449965 1.818522779 -0.090989 131 3 SH684 684 Gln3 5' flank 25.201291 104.500671 64.850981 1.81191655 -0.09101 4 72 SH13936 13936 MT COB Cytbi3 28.940239 142.973612 28.940239 115.033373 71.986806 1.857252905 -0.091015 35 52 SH19539 19539 CBP1 1.2 24.482754 100.753593 62.6181735 1.796700396 -0.091067 150 79 SH19993 19993 YBR048W spliced 25.407924 105.591003 65.4994635 1.816237743 -0.091085 169 94 SH11826 11826 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6016 6029 968.76308 1469.540082 1219.151581 3.086057706 -0.091093 87 90 SH9587 9587 RUF3 RUF3 321 342 36.966233 127.317408 82.1418205 1.914564324 -0.091096 194 4 SH16270 16270 YDR447C_4_1355542_1354818_INTRON_4_317 intron 38.897519 168.189354 38.897519 130.291835 84.594677 1.927343037 -0.091099 141 39 SH5864 5864 snR35 snR35 506 522 24.439016 100.505917 62.4724665 1.795688653 -0.091101 178 47 SH5370 5370 snR31 5' 81.818485 196.009281 138.913883 2.142745651 -0.091146 164 77 SH4651 4651 snR3 snR3 171 186 53.534765 152.625122 103.0799435 2.013174172 -0.09115 110 4 SH9655 9655 RUF4 RUF4 51 65 42.508563 135.828248 89.1684055 1.950211001 -0.091166 135 60 SH9452 9452 RUF2 RUF2 101 116 23.95059 96.612922 60.281756 1.780185895 -0.091167 154 98 SH9143 9143 snR7 U5 RNA 5' - 4 -14 4 23.087759 89.864355 56.476057 1.751864368 -0.091189 180 94 SH14450 14450 MT 21S rRNA 21S rRNA3 114.676253 360.51938 114.676253 246.843127 180.75969 2.257101588 -0.091211 213 20 SH20854 20854 YLR061W spliced 24.926115 103.078611 64.002363 1.806196009 -0.091234 11 55 SH20732 20732 YJL189W spliced 37.749625 128.542693 83.146159 1.919842191 -0.091302 133 62 SH9969 9969 RUF5-1 RUF5-1 651 667 47.008386 142.705907 94.8571465 1.977070056 -0.091326 16 19 SH14700 14700 MT tRNA thr2 5' / tRNA 23.127057 112.315433 23.127057 90.188376 56.6577165 1.753259067 -0.091348 87 76 SH9029 9029 snR17a / U3a U3a 431 448 22.535304 85.592067 54.0636855 1.732905648 -0.091362 180 41 SH16194 16194 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 66.510389 237.907391 66.510389 172.397002 119.4536955 2.07719959 -0.091374 7 79 SH18973 18973 YOR096W_15_505793_506766_INTRON_145_545 intron 35.95258 160.698757 35.95258 125.746177 80.8493785 1.907676686 -0.091381 148 53 SH4280 4280 telomerase RNA telomerase 436 455 22.572703 85.881258 54.2269805 1.734215422 -0.091386 143 74 SH1316 1316 Ile3 5' flank 24.696015 101.890255 63.293135 1.801356607 -0.091394 206 50 SH9966 9966 RUF5-1 RUF5-1 636 653 25.29748 105.038182 65.167831 1.814033266 -0.091413 165 98 SH21097 21097 YNL044W spliced 23.474142 92.909624 58.191883 1.764862411 -0.091461 207 44 SH2069 2069 Lys4 tRNA 11 25 30.153301 116.941542 73.5474215 1.866567451 -0.091492 130 25 SH9475 9475 RUF2 RUF2 216 233 23.534686 93.384376 58.459531 1.766855327 -0.091508 6 4 SH21900 21900 copy of SH19200 20.499394 71.4165 45.957947 1.66236062 -0.091554 91 69 SH15784 15784 YDL029W_4_399336_400634_INTRON_23_145 exon/intron 23.301018 113.881258 23.301018 91.58024 57.440629 1.759219187 -0.091557 202 57 SH18288 18288 YML067C_13_140214_139063_INTRON_32_124 intron/exon 28.733232 142.47417 28.733232 114.740938 71.737085 1.855743725 -0.091616 156 52 SH9324 9324 RUF1 RUF1 196 215 22.498506 85.335438 53.916972 1.731725494 -0.091645 46 94 SH670 670 Gln2 3' flank 29.95583 116.647933 73.3018815 1.865115122 -0.091661 71 97 SH250 250 Arg3 3' flank 24.083092 97.713737 60.8984145 1.784605986 -0.09167 70 6 SH3090 3090 Ser3 3' flank 24.95063 103.24254 64.096585 1.806834891 -0.091675 63 42 SH3631 3631 Val1 3' flank 25.815626 107.790228 66.802927 1.824795492 -0.091715 95 48 SH7973 7973 snoRNA cluster 2 snR57 101.472064 327.119586 101.472064 226.647522 164.059793 2.215002159 -0.09172 125 91 SH14936 14936 MT tRNA Asn tRNA / 3' 25.079291 127.998796 25.079291 103.919505 64.499398 1.809555661 -0.09172 199 94 SH1797 1797 Leu8 tRNA 11 25 2565.165721 3493.740047 3029.452884 3.481364202 -0.091776 107 71 SH21229 21229 YOR234C spliced 24.213618 98.765509 61.4895635 1.78880141 -0.091778 201 11 SH15442 15442 YBL087C_2_60732_59815_INTRON_43_546 5' exon 26.205604 134.548759 26.205604 109.343155 67.7743795 1.83106555 -0.09179 159 23 SH11827 11827 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6021 6036 12177.58308 13704.1309 12940.85699 4.111963038 -0.091817 94 3 SH12795 12795 MT COX1 COX1ai1 22.307617 105.203742 22.307617 83.896125 53.101871 1.725109823 -0.091826 188 103 SH9955 9955 RUF5-1 RUF5-1 581 598 25.807817 107.761838 66.7848275 1.824677809 -0.091866 53 85 SH18796 18796 YNL301C_14_64561_63569_INTRON_113_544 intron 26.417509 135.235649 26.417509 109.81814 68.1178245 1.833260769 -0.09189 60 51 SH16771 16771 YGL103W_7_310965_311925_INTRON_50_560 intron 21.128035 95.72027 21.128035 75.592235 48.360135 1.684487505 -0.091892 209 94 SH10668 10668 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 226 243 26.430612 109.847366 68.138989 1.833395686 -0.091895 127 24 SH16236 16236 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 23.023423 111.449836 23.023423 89.426413 56.224918 1.749928831 -0.091903 144 85 SH18308 18308 YML073C_13_124172_123227_INTRON_16_430 intron 24.576794 124.888027 24.576794 101.311233 62.9440135 1.798954431 -0.091926 3 17 SH5206 5206 snR13 3' 23.328313 91.826745 57.577529 1.760253023 -0.091941 212 50 SH11925 11925 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6511 6526 28.498516 114.338417 71.4184665 1.853810521 -0.091944 12 78 SH13464 13464 MT COX1 intronic 31.179548 148.704616 31.179548 118.525068 74.852308 1.874205196 -0.091965 68 89 SH9796 9796 RUF4 RUF4 756 772 24.361567 99.971855 62.166711 1.793557891 -0.091972 79 70 SH2022 2022 Lys3 tRNA-intron/exon 56 72 128.081459 267.291725 197.686592 2.295977214 -0.091977 110 98 SH5146 5146 snR11 3' 22.370002 84.385858 53.37793 1.727361728 -0.092001 110 78 SH4129 4129 SRP RNA SRP RNA 536 548 322.455509 560.299924 441.3777165 2.644810403 -0.092034 152 9 SH1607 1607 Leu5 5' flank 25.118726 104.152459 64.6355925 1.810471734 -0.092043 83 47 SH282 282 Arg4 6-22 6 22 47.235103 143.111556 95.1733295 1.978515263 -0.092044 76 66 SH17920 17920 YLR061W_12_263195_263949_INTRON_13_401 3' exon 31.888039 150.489745 31.888039 119.601706 75.7448725 1.879353239 -0.092073 172 11 SH1809 1809 Leu8 tRNA 71 85 4292.748317 5487.871074 4890.309696 3.689336363 -0.09208 67 62 SH6838 6838 snR52 3' 22.366615 84.369907 53.368261 1.727283052 -0.092112 39 60 SH7093 7093 snR63 5' 25.442634 105.858888 65.650761 1.817239765 -0.092116 28 93 SH18733 18733 YNL147W_14_350937_351380_INTRON_19_138 3' exon 22.823282 109.707485 22.823282 87.884203 55.3537425 1.743146989 -0.092122 70 83 SH9815 9815 RUF4 3' 22.512821 85.488441 54.000631 1.732398835 -0.09213 199 99 SH767 767 Gln4 3' flank 27.041584 111.204399 69.1229915 1.839622525 -0.092139 71 60 SH6321 6321 snR42 3' 24.719705 102.073722 63.3967135 1.802066745 -0.092143 176 9 SH16399 16399 YER056C-A_5_270183_269421_INTRON_38_434 exon/intron 25.224449 128.944539 25.224449 104.72009 64.9722695 1.812728037 -0.092204 80 30 SH4310 4310 telomerase RNA telomerase 586 603 179.327034 344.764531 262.0457825 2.418377174 -0.092242 136 39 SH8686 8686 LSR1 / U2 RNA U2 71 87 23.731502 94.992968 59.362235 1.773510244 -0.092243 36 15 SH15954 15954 YDL130W_4_229906_230527_INTRON_115_415 intron 26.118732 134.297676 26.118732 109.178944 67.648838 1.830260341 -0.092284 113 73 SH13881 13881 MT COB intronic 23.087214 112.050279 23.087214 89.963065 56.5251395 1.752241643 -0.092284 97 98 SH2963 2963 Ser1 tRNA 46 58 25.435628 105.839356 65.637492 1.817151978 -0.092324 6 8 SH15881 15881 YDL082W_4_308423_309387_INTRON_5_369 intron 26.739919 136.294464 26.739919 110.554545 68.647232 1.83662303 -0.092332 48 39 SH2619 2619 Pro3 tRNA-intron 46 63 64.439542 169.325142 116.882342 2.067748905 -0.092355 77 102 SH6500 6500 snR46 5' - 7 -9 7 27.351738 111.894609 69.6231735 1.842753815 -0.092375 128 29 SH2632 2632 Pro3 3' flank 21.241399 76.404941 48.82317 1.688625974 -0.092377 49 54 SH1997 1997 Lys3 5' flank 26.743268 110.56493 68.654099 1.836666472 -0.092384 91 51 SH19826 19826 Negative Control 25.956558 108.593316 67.274937 1.8278533 -0.092405 65 51 SH2465 2465 Phe5 3' flank 21.214765 76.226082 48.7204235 1.687711055 -0.092431 139 36 SH2020 2020 Lys3 tRNA-intron/exon 46 62 26.457512 109.938581 68.1980465 1.833771935 -0.09244 186 66 SH440 440 Asp1 tRNA 21 33 312.489893 545.471947 428.98092 2.632437976 -0.092442 139 77 SH769 769 Gln4 3' flank 34.691256 123.850996 79.271126 1.899115027 -0.092456 81 19 SH14022 14022 MT COB Exon4 23.953837 119.720477 23.953837 96.76664 60.3602385 1.780750947 -0.092458 206 80 SH7974 7974 snoRNA cluster 2 snR57 22.109071 103.596609 22.109071 82.487538 52.2983045 1.718487609 -0.092462 66 36 SH16509 16509 YER117W_5_396765_397649_INTRON_43_513 intron 27.439165 138.529262 27.439165 112.090097 69.764631 1.843635301 -0.092467 160 44 SH9125 9125 snR14 / U4 RNA 3' 28.684829 114.713499 71.699164 1.855514092 -0.092499 45 20 SH5526 5526 snR33 5' 26.911408 110.941418 68.926413 1.838385678 -0.092511 72 41 SH13391 13391 MT COX1 intronic 23.441565 115.201224 23.441565 92.759659 58.100612 1.764180707 -0.09254 45 41 SH11596 11596 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4866 4883 186.18506 355.159252 270.672156 2.432443582 -0.092579 173 86 SH16445 16445 YER074W_5_306319_307192_INTRON_4_469 intron 22.071415 103.303153 22.071415 82.231738 52.1515765 1.717267441 -0.092612 157 78 SH21526 21526 copy of SH3561 95.562397 217.552064 156.5572305 2.19467313 -0.092622 75 39 SH1906 1906 Lys1 5' flank - tRNA2 2 25.542166 106.427179 65.9846725 1.819443066 -0.09265 76 73 SH15259 15259 MT 9S rRNA 5' 22.060336 103.216527 22.060336 82.156191 52.1082635 1.716906601 -0.092652 90 58 SH3817 3817 RNaseP RNaseP 51 63 28.216173 113.77771 70.9969415 1.85123964 -0.092654 132 80 SH13572 13572 MT COX1 Exon 6 21.54281 99.059302 21.54281 78.516492 50.029651 1.699227473 -0.092707 87 31 SH21801 21801 copy of SH15071 24.521696 101.086984 62.80434 1.797989656 -0.092717 81 70 SH4526 4526 U3b (snR17b) U3b 186 202 186.912374 356.294725 271.6035495 2.433935441 -0.092741 4 21 SH10125 10125 RUF6 RUF6 471 487 25.985562 108.776326 67.380944 1.828537091 -0.092752 70 27 SH14571 14571 MT 21S rRNA 21S rRNA3 33.967792 155.766997 33.967792 122.799205 78.3834985 1.894224643 -0.092777 191 70 SH21071 21071 YMR225C spliced 88.842091 207.101701 147.971896 2.170179239 -0.092803 149 86 SH15332 15332 YAL003W_1_142172_143158_INTRON_81_446 3' exon 27.535893 138.856773 27.535893 112.32088 69.9283865 1.844653508 -0.092818 2 5 SH8340 8340 snoRNA cluster4 snR53 22.508918 107.030105 22.508918 85.521187 54.0150525 1.732514803 -0.09283 194 75 SH136 136 Arg1 56-68 56 68 62.951515 167.070703 115.011109 2.060739791 -0.092854 198 2 SH12947 12947 MT COX1 COX1ai2 24.160551 121.611175 24.160551 98.450624 61.3055875 1.787500059 -0.092857 153 91 SH15951 15951 YDL130W_4_229906_230527_INTRON_115_415 5' exon 25.628298 131.526683 25.628298 106.898385 66.2633415 1.821273333 -0.092858 112 103 SH7189 7189 snR64 snR64 11 25 10360.56466 11897.64012 11129.10239 4.046460138 -0.092867 171 45 SH19473 19473 ADH1 23.675471 94.617221 59.146346 1.77192792 -0.092896 206 52 SH17431 17431 YIL133C_9_99416_98527_INTRON_32_321 intron 24.116665 121.222317 24.116665 98.105652 61.1111585 1.786120517 -0.09291 5 49 SH9923 9923 RUF5-1 RUF5-1 421 442 28.328656 114.034714 71.181685 1.852368264 -0.092921 143 14 SH14059 14059 MT COB Cytbi4 22.686665 108.584875 22.686665 86.89821 54.7924375 1.738720621 -0.092922 79 41 SH21895 21895 copy of SH19000 23.621743 94.199454 58.9105985 1.770193435 -0.092924 71 6 SH2117 2117 Met1 5' flank 22.880582 88.407048 55.643815 1.745416898 -0.092953 94 104 SH16596 16596 YFL034C-A_6_64931_64242_INTRON_13_333 intron 25.719035 132.104116 25.719035 107.385081 66.552058 1.82316149 -0.092954 75 28 SH1310 1310 Ile3 5' flank 22.639647 86.538166 54.5889065 1.737104395 -0.092956 60 18 SH17697 17697 YKL006W_11_431544_432358_INTRON_130_527 intron/exon 22.198718 104.369246 22.198718 83.170528 52.684623 1.721683877 -0.092965 28 84 SH6422 6422 snR45 5' 23.471481 93.035033 58.253257 1.765320212 -0.092993 156 40 SH13319 13319 MT COX1 COX1-ai5a 22.78537 109.459863 22.78537 87.674493 55.2299315 1.742174505 -0.093046 132 85 SH3990 3990 RNase MRP 3' 23.375205 92.299785 57.837495 1.762209475 -0.093112 167 104 SH18194 18194 YML024W_13_225889_226697_INTRON_4_401 intron 61.123998 224.423047 61.123998 164.299049 112.7115235 2.05196832 -0.093114 141 94 SH18 18 Ala1 5' flank - tRNA 3 5' flank 3 34.525142 123.646315 79.0857285 1.898098119 -0.093118 10 43 SH15800 15800 YDL061C_4_341182_340627_INTRON_1_408 intron 23.43566 115.205354 23.43566 92.769694 58.102677 1.764196142 -0.093127 107 80 SH2658 2658 Pro4 5' flank 21.992273 81.71181 51.8520415 1.71476586 -0.09313 84 37 SH2139 2139 Met1 3' flank 26.006801 108.921914 67.4643575 1.829074389 -0.093141 21 75 SH6127 6127 snR39B 5' 162.571732 319.623762 241.097747 2.382193152 -0.093176 175 19 SH19821 19821 Negative Control 24.305038 99.645287 61.9751625 1.792217674 -0.093222 164 23 SH14207 14207 MT ATP9 5' 22.086399 103.481257 22.086399 82.394858 52.2406285 1.718008393 -0.093291 133 14 SH17418 17418 YIL111W_9_155219_155762_INTRON_2_89 5' exon 28.213743 141.025456 28.213743 113.811713 71.012728 1.851336197 -0.093304 63 8 SH1772 1772 Leu7 3' flank 26.988359 111.157086 69.0727225 1.839306574 -0.09331 155 4 SH17068 17068 YGR214W_7_920570_921783_INTRON_91_545 intron/exon 24.838381 126.626134 24.838381 102.787753 63.813067 1.804909618 -0.093312 192 74 SH16004 16004 YDL137W_4_216158_217074_INTRON_1_332 intron 29.345866 144.143758 29.345866 115.797892 72.571879 1.860768368 -0.093343 68 101 SH14833 14833 MT tRNA Asp 5' 23.133231 112.558984 23.133231 90.425753 56.779492 1.754191503 -0.093345 129 66 SH7271 7271 snR65 3' 23.96675 96.957324 60.462037 1.781482775 -0.093347 117 8 SH19258 19258 YPL143W_16_282121_282969_INTRON_20_544 exon/intron 23.059261 111.904196 23.059261 89.844935 56.452098 1.751680087 -0.093365 14 87 SH624 624 Gln2 5' flank 23.670755 94.626797 59.148776 1.771945762 -0.093376 19 31 SH17252 17252 YHR097C_8_298611_297387_INTRON_126_249 intron 24.415332 123.965276 24.415332 100.549944 62.482638 1.795759357 -0.093381 132 98 SH21464 21464 copy of SH1000 29.463535 115.983395 72.723465 1.861674563 -0.093384 115 19 SH5944 5944 snR36 snR36 176 192 30.440416 117.48843 73.964423 1.869022874 -0.093398 148 41 SH93 93 Ala2 3' flank 25.05432 103.92656 64.49044 1.80949534 -0.093411 160 6 SH13628 13628 MT ATP6 ATP6 22.773584 109.390427 22.773584 87.616843 55.1952135 1.741901418 -0.093415 94 17 SH12437 12437 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.935465 119.653363 23.935465 96.717898 60.3266815 1.780509436 -0.093433 109 7 SH5883 5883 snR35 3' 24.228955 99.057957 61.643456 1.789886979 -0.09345 175 44 SH1540 1540 Leu3 3' flank 41.754553 134.852015 88.303284 1.945976855 -0.093464 142 54 SH13034 13034 MT COX1 COX1ai2 24.57327 124.990239 24.57327 101.416969 62.9951195 1.799306904 -0.093487 147 69 SH20944 20944 YLR426W spliced 47.510294 143.64907 95.579682 1.980365581 -0.093526 10 23 SH16780 16780 YGL103W_7_310965_311925_INTRON_50_560 intron 43.139831 179.112436 43.139831 136.972605 90.056218 1.954513704 -0.093559 10 61 SH18905 18905 YOL120C_15_94401_93394_INTRON_113_559 intron 24.346424 123.364312 24.346424 100.017888 62.182156 1.793665776 -0.093609 33 7 SH20753 20753 YJR021C spliced 45.039329 139.902287 92.470808 1.966004652 -0.093617 85 90 SH10757 10757 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 671 687 83.405138 198.77277 141.088954 2.149493014 -0.093634 39 84 SH19410 19410 YPR098C_16_729525_728944_INTRON_48_143 intron 24.821483 126.547618 24.821483 102.726135 63.773809 1.804642357 -0.093644 107 78 SH2359 2359 Phe3 3' flank 23.911834 96.551777 60.2318055 1.779825882 -0.093645 69 18 SH5564 5564 snR33 snR33 106 122 22.867845 88.372406 55.6201255 1.745231964 -0.093653 5 36 SH21894 21894 copy of SH18999 25.873771 108.261823 67.067797 1.826514041 -0.093655 205 56 SH20761 20761 YJR145C spliced 312.748252 546.291128 429.51969 2.632983078 -0.093667 114 73 SH3039 3039 Ser2 3' flank 22.872166 88.413552 55.642859 1.745409436 -0.093733 13 33 SH5703 5703 snR34 snR34 436 455 22.897007 88.607913 55.75246 1.746264035 -0.093738 193 96 SH20814 20814 YKL190W spliced 23.487549 93.236639 58.362094 1.766130866 -0.093795 169 103 SH8976 8976 snR17a / U3a U3a 166 183 23.470677 93.106073 58.288375 1.765581948 -0.093802 49 25 SH8657 8657 LSR1 / U2 RNA 5' 22.969435 89.181408 56.0754215 1.748772547 -0.093811 97 32 SH4149 4149 SRP RNA SRP RNA 636 652 44.519445 139.122143 91.820794 1.962941044 -0.093815 90 93 SH20566 20566 YHR010W spliced 33.406241 122.021098 77.7136695 1.890497416 -0.093826 191 66 SH7451 7451 snR69 3' 24.444455 100.774189 62.609322 1.796639001 -0.09385 17 3 SH9864 9864 RUF5-1 RUF5-1 126 147 23.212929 91.105234 57.1590815 1.757085241 -0.093865 95 98 SH13838 13838 MT COB Cytbi2 23.80277 118.517158 23.80277 95.714388 59.758579 1.776400262 -0.093888 117 5 SH16889 16889 YGL189C_7_148970_148233_INTRON_1_368 intron/exon 23.186372 113.090293 23.186372 90.903921 57.0451465 1.7562187 -0.093959 141 2 SH16772 16772 YGL103W_7_310965_311925_INTRON_50_560 intron 23.201608 113.227191 23.201608 91.025583 57.1135955 1.756739501 -0.09397 132 17 SH13931 13931 MT COB Cytbi3 25.984482 133.863315 25.984482 108.878833 67.4316575 1.828863835 -0.09402 136 44 SH20862 20862 YLR093C spliced 23.810697 95.791309 59.801003 1.776708468 -0.094035 49 17 SH19510 19510 ACT1 22.606624 86.381487 54.4940555 1.73634913 -0.09404 68 35 SH4184 4184 telomerase RNA 5' 22.763237 87.594561 55.178899 1.741773031 -0.094049 145 71 SH8374 8374 snoRNA cluster 5 5' 24.627782 125.374878 24.627782 101.747096 63.187439 1.800630754 -0.094059 212 4 SH1629 1629 Leu5 tRNA 11 23 54.369987 154.127092 104.2485395 2.018069979 -0.094071 47 21 SH17967 17967 YLR185W_12_522665_523290_INTRON_8_366 intron 27.091485 137.520231 27.091485 111.428746 69.2601155 1.840483211 -0.094089 133 27 SH17516 17516 YJL136C_10_156971_156248_INTRON_25_484 intron 22.025557 103.05356 22.025557 82.028003 52.02678 1.716226948 -0.094093 16 82 SH13792 13792 MT COB intronic 22.170145 104.23523 22.170145 83.065085 52.617615 1.721131159 -0.094152 97 75 SH8078 8078 snoRNA cluster 2 snR61/3' 22.718677 108.976874 22.718677 87.258197 54.988437 1.740271375 -0.094152 127 103 SH15150 15150 MT tRNA Thr1 reverse complement 3' 23.443249 115.370094 23.443249 92.926845 58.185047 1.764811389 -0.094158 68 18 SH18488 18488 YMR194W_13_651144_651909_INTRON_17_479 intron 40.193472 171.707345 40.193472 132.513873 86.3536725 1.936280812 -0.094164 145 47 SH13785 13785 MT COB intronic 22.292389 105.281041 22.292389 83.988652 53.1405205 1.725425804 -0.094197 96 51 SH4398 4398 telomerase RNA telomerase 1026 1043 26.133104 109.322662 67.727883 1.830767501 -0.094211 44 14 SH5103 5103 snR11 snR11 116 132 69.145603 176.731199 122.938401 2.08968756 -0.094236 154 4 SH6435 6435 snR45 snR45 21 42 60.633527 163.66176 112.1476435 2.049790152 -0.094263 28 90 SH3677 3677 Val2 3' flank 25.253677 105.044082 65.1488795 1.813906951 -0.094276 114 66 SH8877 8877 LSR1 / U2 RNA U2 1026 1038 25.382103 105.720316 65.5512095 1.816580709 -0.094283 94 93 SH17017 17017 YGR148C_7_788173_787307_INTRON_1_392 intron 25.929465 133.539738 25.929465 108.610273 67.269869 1.827820582 -0.094287 163 85 SH5010 5010 snR10 snR10 81 97 66.251906 172.281702 119.266804 2.076519582 -0.094305 137 84 SH17651 17651 YJR145C_10_702761_701720_INTRON_15_270 intron 21.853921 101.682602 21.853921 80.828681 51.341301 1.71046687 -0.094314 87 85 SH17289 17289 YHR141C_8_382752_381991_INTRON_5_445 intron 25.805212 132.760885 25.805212 107.955673 66.8804425 1.825299138 -0.09432 35 14 SH17016 17016 YGR148C_7_788173_787307_INTRON_1_392 intron 26.068294 134.254889 26.068294 109.186595 67.6274445 1.830122977 -0.094351 126 52 SH17557 17557 YJL189W_10_75932_76473_INTRON_7_392 intron 23.150267 112.809506 23.150267 90.659239 56.904753 1.755148543 -0.09439 126 60 SH3864 3864 RNaseP RNaseP 286 298 33.099149 121.592466 77.3458075 1.888436778 -0.094413 146 35 SH17280 17280 YHR141C_8_382752_381991_INTRON_5_445 intron 27.67075 139.379415 27.67075 112.708665 70.1897075 1.846273433 -0.094418 115 47 SH17436 17436 YIL133C_9_99416_98527_INTRON_32_321 intron 25.980991 133.87946 25.980991 108.898469 67.43973 1.828915823 -0.094466 13 56 SH2138 2138 Met1 3' flank 24.813241 102.750643 63.781942 1.804697738 -0.094483 111 98 SH7701 7701 snoRNA cluster1 intergenic 23.983192 120.188606 23.983192 97.205414 60.594303 1.782431794 -0.094528 17 23 SH19116 19116 YPL031C_16_493033_492014_INTRON_18_119 exon/intron 22.579695 107.805986 22.579695 86.226291 54.402993 1.735622793 -0.094621 38 83 SH16739 16739 YGL076C_7_365994_364333_INTRON_565_1032 intron 23.023072 111.701776 23.023072 89.678704 56.350888 1.750900764 -0.094626 142 66 SH20817 20817 YKL190W spliced 24.360708 100.239659 62.3001835 1.794489326 -0.094647 65 28 SH2544 2544 Pro2 5' flank 22.259628 83.780182 53.019905 1.724438945 -0.094659 157 71 SH17103 17103 YHL001W_8_104270_105084_INTRON_130_527 intron/exon 22.541707 107.480846 22.541707 85.939139 54.240423 1.734323068 -0.094682 146 64 SH14775 14775 MT ORF11; tRNA Leu; tRNA Gln intergenic 24.832185 126.699841 24.832185 102.867656 63.8499205 1.805160361 -0.094704 60 49 SH10487 10487 RUF8 RUF8 361 380 36.831506 127.340137 82.0858215 1.914268149 -0.094729 162 28 SH2471 2471 Phe5 3' flank 24.828569 102.851185 63.839877 1.805092042 -0.094735 14 13 SH9493 9493 RUF2 3' 23.468394 93.178073 58.3232335 1.765841594 -0.094742 63 7 SH20706 20706 YJL024C spliced 22.815463 88.066544 55.4410035 1.743831083 -0.094764 168 11 SH16088 16088 YDR025W_4_491510_492319_INTRON_46_384 intron 22.382861 106.114015 22.382861 84.731154 53.5570075 1.728816303 -0.094795 176 51 SH14490 14490 MT 21S rRNA 21S rRNA3 22.702667 108.896357 22.702667 87.19369 54.9481785 1.7399533 -0.094806 25 9 SH9896 9896 RUF5-1 RUF5-1 286 301 27.334903 112.003092 69.6689975 1.843039561 -0.094817 207 83 SH576 576 Gln1 5' flank 32.645038 120.93118 76.788109 1.885293973 -0.094903 128 19 SH3926 3926 RNase MRP RNaseMRP 46 67 21.329693 77.212216 49.2709545 1.692590976 -0.094937 166 96 SH6305 6305 snR42 snR42 306 320 25.430947 106.033614 65.7322805 1.8177787 -0.094958 214 64 SH21127 21127 YNL130C spliced 24.059881 97.861906 60.9608935 1.785051324 -0.094989 180 55 SH10695 10695 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 361 378 32.96145 121.419345 77.1903975 1.887563277 -0.095012 103 7 SH1987 1987 Lys2 3' flank 22.727763 87.412528 55.0701455 1.740916224 -0.09507 187 78 SH2694 2694 Pro4 3' flank 23.819529 95.967513 59.893521 1.777379845 -0.095118 106 87 SH13756 13756 MT COB intronic 21.513086 99.017279 21.513086 78.504193 50.0086395 1.69904504 -0.095167 156 32 SH13489 13489 MT COX1 intronic 25.034816 128.005552 25.034816 103.970736 64.502776 1.809578406 -0.095207 47 30 SH12186 12186 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7816 7834 25.1489 104.572953 64.8609265 1.811983148 -0.095244 12 67 SH20952 20952 YML024W spliced 79.514333 192.903807 136.20907 2.134206028 -0.095272 89 4 SH9226 9226 snR6 / U6 RNA U6 1 15 23.893223 96.572973 60.233098 1.779835201 -0.095346 200 73 SH20057 20057 YBR255C-A spliced 23.973539 97.21422 60.5938795 1.782428759 -0.095385 57 47 SH16472 16472 YER102W_5_362729_363698_INTRON_1_360 intron 35.485583 159.744694 35.485583 125.259111 80.372347 1.905106651 -0.095407 191 17 SH2850 2850 Pro7 tRNA-intron/exon 56 71 100.089962 224.992999 162.5414805 2.210964211 -0.095417 95 34 SH20451 20451 YGL137W spliced 40.619153 133.258416 86.9387845 1.939213564 -0.095478 69 94 SH6340 6340 snR43 5' 24.178386 98.861135 61.5197605 1.789014636 -0.095503 210 35 SH19257 19257 YPL143W_16_282121_282969_INTRON_20_544 5' exon 26.087826 134.384874 26.087826 109.297048 67.692437 1.830540149 -0.095506 169 93 SH6229 6229 snR42 5' 60.923843 164.210212 112.5670275 2.051411198 -0.095508 18 60 SH10276 10276 RUF7 5' - 7 -9 7 26.234166 109.624053 67.9291095 1.832055921 -0.095532 65 6 SH5351 5351 snR30 3' 22.275365 83.979089 53.127227 1.725317148 -0.095562 35 28 SH17746 17746 YKL157W_11_154993_158183_INTRON_282_664 intron 35.732775 160.395369 35.732775 125.662594 80.6976845 1.906861073 -0.095566 85 49 SH19428 19428 YPR132W_16_794960_795762_INTRON_66_430 intron 25.559801 131.326041 25.559801 106.76624 66.1630205 1.820615324 -0.095592 155 101 SH12941 12941 MT COX1 COX1ai2 27.06696 137.531528 27.06696 111.464568 69.265764 1.840518629 -0.095602 100 71 SH10844 10844 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1106 1126 606.636189 973.754203 790.195196 2.897734385 -0.095604 41 27 SH2190 2190 Met2 3' flank 23.502247 93.527428 58.5148375 1.767266003 -0.095635 41 22 SH1753 1753 Leu7 tRNA 61 75 25.164705 104.688325 64.926515 1.812422092 -0.095637 142 14 SH12700 12700 MT ORF 8 (hypothetical) ORF8 22.661379 108.611386 22.661379 86.950007 54.805693 1.738825674 -0.095643 195 6 SH20647 20647 YIL004C spliced 26.500198 110.222984 68.361591 1.834812162 -0.095692 116 22 SH7095 7095 snR63 5' 73.920682 184.253474 129.087078 2.11088277 -0.095694 187 40 SH10829 10829 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1031 1049 1031.787462 1559.417485 1295.602474 3.112471768 -0.095702 100 99 SH14924 14924 MT tRNA Tyr 3' 23.221892 113.574269 23.221892 91.352377 57.2871345 1.758057099 -0.095709 64 61 SH19111 19111 YOR312C_15_901173_900242_INTRON_2_427 intron/exon 22.283413 105.338649 22.283413 84.055236 53.1693245 1.725661143 -0.095732 71 61 SH15601 15601 YBR089C-A_2_426588_426148_INTRON_1_114 3' exon 24.582667 125.229276 24.582667 101.646609 63.114638 1.800130096 -0.095753 22 6 SH14595 14595 MT 21S rRNA Sce1 endonuc 25.602808 131.611231 25.602808 107.008423 66.3056155 1.821550311 -0.095772 157 102 SH5768 5768 snR35 snR35 26 40 26.681104 110.62722 68.654162 1.83666687 -0.095775 122 80 SH20796 20796 YKL157W spliced 28.179519 113.890599 71.035059 1.851472746 -0.095824 84 95 SH13289 13289 MT COX1 COX1-ai5a 25.529041 131.154593 25.529041 106.625552 66.0772965 1.820052266 -0.095851 57 46 SH21147 21147 YNL246W spliced 27.55796 112.550092 70.054026 1.845433099 -0.095856 171 41 SH15823 15823 YDL064W_4_337486_338069_INTRON_39_148 intron 26.956979 137.198059 26.956979 111.24108 69.0990295 1.839471948 -0.095898 159 94 SH16604 16604 YFL034C-B_6_63992_63015_INTRON_21_134 5' exon 31.130968 148.808683 31.130968 118.677715 74.9043415 1.87450699 -0.095901 74 101 SH13403 13403 MT COX1 intronic 23.877104 119.378065 23.877104 96.500961 60.1890325 1.779517362 -0.095908 102 78 SH21555 21555 copy of SH4781 66.283254 172.485832 119.384543 2.076948101 -0.095956 75 14 SH456 456 Asp1 3' flank 23.471288 93.317672 58.39448 1.766371795 -0.095965 108 71 SH6689 6689 snR49 5' 22.260483 83.901888 53.0811855 1.724940614 -0.095973 175 84 SH8019 8019 snoRNA cluster 2 snR55 190.266741 551.348603 190.266741 362.081862 276.1743015 2.441183264 -0.095975 195 65 SH6178 6178 snR40 5' 27.584767 112.615659 70.100213 1.845719338 -0.095979 176 96 SH1172 1172 His1 3' flank 22.115546 82.827992 52.471769 1.719925706 -0.09599 102 12 SH18713 18713 YNL130C_14_381156_379555_INTRON_30_470 intron 2504.979007 5935.080201 2504.979007 3431.101194 2968.040101 3.472469764 -0.096004 73 47 SH2432 2432 Phe5 5' flank 25.600665 107.017155 66.30891 1.821571889 -0.096011 86 9 SH1026 1026 Gly2 3' flank 21.829871 80.803026 51.3164485 1.710256592 -0.096085 81 85 SH1076 1076 Gly3 3' flank 24.082068 98.155741 61.1189045 1.786175561 -0.09615 28 58 SH5842 5842 snR35 snR35 396 413 24.548795 101.501495 63.025145 1.799513854 -0.096154 163 78 SH3334 3334 Thr3 tRNA 16 30 30.859148 118.28207 74.570609 1.87256769 -0.09616 56 104 SH17989 17989 YLR275W_12_694378_694800_INTRON_6_95 3' exon 23.573318 116.710685 23.573318 94.137367 58.8553425 1.769785891 -0.096202 181 25 SH19806 19806 Negative Control 25.332826 105.620818 65.476822 1.816087592 -0.096214 159 47 SH8584 8584 snR19 / U1 RNA U1 416 432 24.551457 101.520487 63.035972 1.799588454 -0.096218 90 49 SH14353 14353 MT ORF9 and ORF10 (hypothetical) 5' 21.827574 101.626118 21.827574 80.798544 51.313059 1.710227906 -0.096229 76 87 SH1980 1980 Lys2 3' flank 24.507203 101.290991 62.899097 1.798644411 -0.096239 169 16 SH8144 8144 snoRNA cluster 3; intergenic 23.830616 118.997764 23.830616 96.167148 59.998882 1.778143158 -0.096255 166 61 SH17896 17896 YLR048W_12_242233_243350_INTRON_91_449 3' exon 26.422775 135.507921 26.422775 110.085146 68.2539605 1.834127857 -0.096265 88 85 SH10552 10552 RUF8 RUF8 686 703 22.157735 83.153651 52.655693 1.721445333 -0.096269 183 71 SH18677 18677 YNL112W_14_413636_416278_INTRON_1274_2275 intron 23.785136 118.597578 23.785136 95.812442 59.798789 1.776692389 -0.096302 210 23 SH13469 13469 MT COX1 intronic 23.606306 117.012707 23.606306 94.406401 59.0063535 1.770898777 -0.096312 8 73 SH7860 7860 snoRNA cluster1 intergenic 23.078124 112.350009 23.078124 90.271885 56.6750045 1.753391563 -0.096319 76 28 SH2887 2887 Pro8 5' flank 23.751509 95.549907 59.650708 1.775615603 -0.096331 22 8 SH893 893 Glu3 5' flank 25.623108 107.164233 66.3936705 1.822126679 -0.096349 9 45 SH12159 12159 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7681 7699 43.049446 137.029594 90.03952 1.954433171 -0.096355 185 40 SH437 437 Asp1 tRNA 6 23 30.534414 117.800466 74.16744 1.870213289 -0.096365 112 79 SH16566 16566 YER133W_5_432491_433954_INTRON_178_702 intron 23.353251 114.79179 23.353251 92.438539 57.895895 1.762647772 -0.096372 23 27 SH1003 1003 Gly2 tRNA 6 22 126.378612 265.412832 195.895722 2.292024952 -0.096392 78 61 SH16483 16483 YER102W_5_362729_363698_INTRON_1_360 intron 25.608898 131.701703 25.608898 107.092805 66.3508515 1.821846501 -0.096393 201 43 SH2769 2769 Pro6 5' flank 24.538486 101.467508 63.002997 1.799361209 -0.096404 23 46 SH18780 18780 YNL265C_14_145280_144279_INTRON_28_132 intron/exon 23.318972 114.501614 23.318972 92.182642 57.750807 1.761558057 -0.096476 76 59 SH5705 5705 snR34 snR34 446 465 23.518038 93.732614 58.625326 1.768085271 -0.096488 159 12 SH8095 8095 snoRNA cluster 2 3' 22.69781 109.01152 22.69781 87.31371 55.00576 1.74040817 -0.096533 66 81 SH8 8 Ala1 5' flank 23.169201 91.014368 57.0917845 1.756573618 -0.096549 119 93 SH18944 18944 YOL127W_15_80347_81189_INTRON_14_427 intron 23.784389 118.615186 23.784389 95.830797 59.807593 1.776756324 -0.096549 170 24 SH16888 16888 YGL189C_7_148970_148233_INTRON_1_368 intron 24.034681 120.855399 24.034681 97.820718 60.9276995 1.78481478 -0.096581 144 3 SH11307 11307 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3421 3438 23.869061 96.505418 60.1872395 1.779504425 -0.096597 54 47 SH18003 18003 YLR287C-A_12_713158_712537_INTRON_4_433 intron 22.075277 103.668634 22.075277 82.593357 52.334317 1.718786561 -0.09663 64 91 SH16255 16255 YDR397C_4_1266887_1266355_INTRON_38_129 intron/exon 31.01689 148.567136 31.01689 118.550246 74.783568 1.873806182 -0.096678 57 9 SH6287 6287 snR42 snR42 216 232 23.376552 92.650916 58.013734 1.763530819 -0.096703 116 14 SH9212 9212 snR6 / U6 RNA 5' 40.299431 132.849033 86.574232 1.937388648 -0.096705 80 50 SH13189 13189 MT COX1 Exon4 23.609118 117.076343 23.609118 94.467225 59.0381715 1.771132898 -0.096712 104 69 SH7008 7008 snR60 3' 24.412071 100.832988 62.6225295 1.796730606 -0.096729 90 77 SH21449 21449 copy of SH210 24.626373 101.956016 63.2911945 1.801343292 -0.096766 46 27 SH2384 2384 Phe4 5' flank 25.368931 105.859104 65.6140175 1.81699663 -0.096791 74 26 SH20846 20846 YLR048W spliced 25.378051 105.90863 65.6433405 1.817190674 -0.096809 73 22 SH19098 19098 YOR312C_15_901173_900242_INTRON_2_427 intron 26.046867 134.32868 26.046867 109.281813 67.66434 1.83035985 -0.096817 43 50 SH9464 9464 RUF2 RUF2 161 180 24.580424 101.719978 63.150201 1.800374737 -0.09682 189 88 SH12048 12048 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7126 7139 26.834824 111.028274 68.931549 1.838418038 -0.09684 202 104 SH2593 2593 Pro3 5' flank 72.048228 181.499858 126.774043 2.103030341 -0.096847 211 50 SH9463 9463 RUF2 RUF2 156 173 26.278745 109.802973 68.040859 1.832769788 -0.096904 135 38 SH20533 20533 YGR148C spliced 37.555231 128.605762 83.0804965 1.919499083 -0.096913 101 50 SH3481 3481 Tyr1 5' flank 24.274689 99.779656 62.0271725 1.792581984 -0.096923 56 40 SH5208 5208 snR13 3' 21.590405 79.184579 50.387492 1.702322742 -0.096925 80 62 SH21624 21624 copy of SH7729 23.794322 95.947213 59.8707675 1.777214826 -0.096935 58 75 SH12893 12893 MT COX1 cox1ai1/intronic 21.609318 99.928509 21.609318 79.319191 50.4642545 1.702983862 -0.09695 36 72 SH6170 6170 snR40 5' 25.50747 106.606057 66.0567635 1.819917291 -0.09698 137 48 SH6382 6382 snR43 snR43 151 170 22.106163 82.845452 52.4758075 1.71995913 -0.097002 172 68 SH3480 3480 Tyr1 5' flank 24.013973 97.702225 60.858099 1.784318382 -0.097046 173 33 SH11311 11311 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2/25S 3441 3459 527.259007 861.844061 694.551534 2.841704475 -0.097053 172 22 SH9045 9045 snR17a / U3a 3' 22.924708 89.133972 56.02934 1.748415507 -0.097063 77 71 SH21349 21349 YPR132W spliced 36.923223 127.633143 82.278183 1.915284692 -0.097064 44 24 SH6669 6669 snR48 3' 61.761252 165.611224 113.686238 2.055707895 -0.097095 120 26 SH10003 10003 RUF5-1 3' 24.3308 100.250868 62.290834 1.794424146 -0.097104 185 45 SH9171 9171 snR7 U5 RNA U5 126 143 34.543644 123.916 79.229822 1.89888868 -0.097119 191 8 SH10157 10157 RUF6 RUF6 631 653 25.432302 106.224671 65.8284865 1.81841387 -0.097166 35 47 SH2418 2418 Phe4 3' flank 26.22691 109.703113 67.9650115 1.832285395 -0.097167 172 43 SH15845 15845 YDL075W_4_322225_322987_INTRON_58_478 intron 24.851896 127.023365 24.851896 103.171469 64.0116825 1.806259242 -0.097185 76 38 SH20961 20961 YML025C spliced 25.604007 107.134047 66.369027 1.821965451 -0.097192 102 59 SH3036 3036 Ser2 3' flank 29.153496 115.71315 72.433323 1.85993841 -0.097202 160 25 SH14810 14810 "MT tRNAs (Lys, Arg1, Gly)" intergenic / tRNA Arg1 24.732282 126.278835 24.732282 102.546553 63.6394175 1.803726196 -0.097214 136 2 SH18911 18911 YOL120C_15_94401_93394_INTRON_113_559 intron 23.11029 112.725508 23.11029 90.615218 56.862754 1.75482789 -0.09726 141 8 SH15305 15305 YAL001C_1_151163_147591_INTRON_71_160 intron 24.003206 120.641243 24.003206 97.638037 60.8206215 1.784050854 -0.097262 17 99 SH6121 6121 snR39B 5' 27.654984 112.84564 70.250312 1.846648257 -0.097277 170 16 SH15184 15184 MT COX3 cox3 23.879585 119.542828 23.879585 96.663243 60.271414 1.78011138 -0.097348 37 44 SH16909 16909 YGL232W_7_62074_63001_INTRON_58_115 intron/exon 22.269033 105.357496 22.269033 84.088463 53.178748 1.725738108 -0.097355 3 57 SH19266 19266 YPL143W_16_282121_282969_INTRON_20_544 intron 27.51199 139.05701 27.51199 112.54502 70.028505 1.845274855 -0.097443 142 24 SH19716 19716 Negative Control 25.405546 106.108599 65.7570725 1.81794247 -0.097469 195 34 SH2361 2361 Phe3 3' flank 26.492749 110.31167 68.4022095 1.83507013 -0.097489 50 42 SH774 774 Gln4 3' flank 22.51868 86.014851 54.2667655 1.734533937 -0.097495 111 29 SH3828 3828 RNaseP RNaseP 106 118 106.108241 234.599665 170.353953 2.231352216 -0.097499 29 74 SH6737 6737 snR49 3' 21.18501 76.414274 48.799642 1.688416636 -0.097533 99 46 SH4201 4201 telomerase RNA telomerase 41 55 30.391101 117.649815 74.020458 1.869351768 -0.097562 57 31 SH4495 4495 U3b (snR17b) U3b 31 52 22.638236 86.945965 54.7921005 1.73871795 -0.09757 149 75 SH12012 12012 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6946 6964 24.030254 97.885223 60.9577385 1.785028847 -0.097575 214 7 SH15947 15947 YDL125C_4_239605_239018_INTRON_98_208 intron 26.877565 137.046123 26.877565 111.168558 69.0230615 1.838994218 -0.097624 197 22 SH4332 4332 telomerase RNA telomerase 696 712 67.35391 174.273294 120.813602 2.082115833 -0.097646 178 97 SH12060 12060 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7186 7201 82.211273 197.359615 139.785444 2.14546195 -0.097651 90 85 SH14570 14570 MT 21S rRNA 21S rRNA3 31.710259 150.363795 31.710259 119.653536 75.6818975 1.878992012 -0.097666 38 73 SH21251 21251 YPL075W spliced 23.208585 91.435185 57.321885 1.758320464 -0.097681 110 55 SH19811 19811 Negative Control 25.211875 105.105355 65.158615 1.813971844 -0.097688 88 69 SH16417 16417 YER056C-A_5_270183_269421_INTRON_38_434 intron 23.157565 113.188415 23.157565 91.03085 57.0942075 1.756592049 -0.097692 73 8 SH11938 11938 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6576 6589 106.327801 234.968281 170.648041 2.232101307 -0.097704 110 94 SH8641 8641 snR19 / U1 RNA 3' 22.685627 87.32758 55.0066035 1.740414829 -0.097721 162 29 SH18964 18964 YOL127W_15_80347_81189_INTRON_14_427 intron/exon 24.827146 126.915451 24.827146 103.088305 63.9577255 1.805893011 -0.097762 62 102 SH8935 8935 snR17a / U3a 5' 20.694503 73.144856 46.9196795 1.671355037 -0.097784 15 36 SH12029 12029 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS/3'flank 7031 7053 22.855119 88.660938 55.7580285 1.74630741 -0.097843 213 75 SH1635 1635 Leu5 tRNA-intron 41 58 23.862861 96.582723 60.222792 1.779760886 -0.097874 50 83 SH17857 17857 YKR095W-A_11_625432_625839_INTRON_39_113 intron/exon 25.031019 128.200466 25.031019 104.169447 64.600233 1.810234084 -0.097885 140 62 SH12897 12897 MT COX1 intronic 24.487668 124.811048 24.487668 101.32338 62.905524 1.798688784 -0.097931 158 4 SH14469 14469 MT 21S rRNA 21S rRNA3 22.695704 109.122742 22.695704 87.427038 55.061371 1.740847021 -0.097952 42 31 SH9124 9124 snR14 / U4 RNA 3' 27.667132 112.912697 70.2899145 1.846893015 -0.097956 133 68 SH17916 17916 YLR061W_12_263195_263949_INTRON_13_401 intron 22.670492 108.903947 22.670492 87.233455 54.9519735 1.739983294 -0.097978 94 68 SH1833 1833 Leu9 5' flank 25.189149 105.009582 65.0993655 1.813576756 -0.097979 28 63 SH17134 17134 YHR010W_8_126513_127484_INTRON_32_592 intron 22.642523 108.661182 22.642523 87.018659 54.830591 1.739022927 -0.098004 132 45 SH9508 9508 RUF3 5' 25.439866 106.334673 65.8872695 1.81880151 -0.098006 195 83 SH9925 9925 RUF5-1 RUF5-1 431 452 24.131118 98.740094 61.435606 1.788420147 -0.098048 39 78 SH20597 20597 YHR041C spliced 25.13029 104.705356 64.917823 1.812363947 -0.098049 151 98 SH14992 14992 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 23.011837 111.924635 23.011837 89.912798 56.4623175 1.7517587 -0.098059 64 58 SH21447 21447 copy of SH126 26.38113 110.098623 68.2398765 1.834038232 -0.098076 18 6 SH4496 4496 U3b (snR17b) U3b 36 56 25.633362 107.363856 66.498609 1.822812561 -0.098077 161 42 SH13332 13332 MT COX1 COX1-ai5a 22.381767 106.397802 22.381767 85.016035 53.698901 1.729965398 -0.098098 86 98 SH13897 13897 MT COB intronic 21.745052 101.114772 21.745052 80.36972 51.057386 1.708058576 -0.09813 66 57 SH15695 15695 YBR220C_2_663261_662457_INTRON_302_722 intron 28.584632 142.454644 28.584632 114.870012 71.727322 1.855684616 -0.098178 171 17 SH16029 16029 YDL191W_4_117665_118518_INTRON_4_494 exon/intron 22.853045 110.53002 22.853045 88.676975 55.76501 1.746361784 -0.098191 42 104 SH19940 19940 YBL027W spliced 26.565737 110.514654 68.5401955 1.835945339 -0.098197 109 69 SH4481 4481 U3b (snR17b) 5' 20.427244 71.417901 45.9225725 1.662026208 -0.098202 103 19 SH16058 16058 YDL219W_4_65243_65766_INTRON_66_136 exon/intron 21.428116 98.580007 21.428116 78.151891 49.7900035 1.697142157 -0.098206 28 103 SH19206 19206 YPL081W_16_404945_406039_INTRON_8_508 intron 82.495879 279.370823 82.495879 197.874944 140.1854115 2.146702821 -0.098253 167 86 SH2934 2934 Ser1 5' flank 26.268163 109.859054 68.0636085 1.83291497 -0.098269 65 73 SH18993 18993 YOR122C_15_552886_552297_INTRON_14_222 exon/intron 23.550313 116.707819 23.550313 94.157506 58.8539095 1.769775317 -0.098276 43 101 SH18958 18958 YOL127W_15_80347_81189_INTRON_14_427 intron 26.339095 135.356175 26.339095 110.01708 68.1780875 1.833644814 -0.098277 203 12 SH13262 13262 MT COX1 COX1-ai4 25.960586 134.078146 25.960586 109.11756 67.539073 1.829555095 -0.098293 160 65 SH13049 13049 MT COX1 COX1ai2 22.403103 106.605977 22.403103 85.202874 53.8029885 1.730806399 -0.098358 26 67 SH1065 1065 Gly3 61-71 + 3' flank 61 24.84851 103.249627 64.0490685 1.806512818 -0.09837 88 36 SH3812 3812 RNaseP RNaseP 26 43 24.338344 100.44322 62.390782 1.795120429 -0.09838 94 42 SH16267 16267 YDR447C_4_1355542_1354818_INTRON_4_317 5' exon 54.943655 209.291552 54.943655 155.347897 105.145776 2.021791831 -0.098406 169 104 SH2998 2998 Ser2 5' flank 23.518409 93.922103 58.720256 1.76878794 -0.098426 121 65 SH2423 2423 Phe4 3' flank 28.308226 114.324741 71.3164835 1.853189921 -0.098428 114 23 SH6755 6755 snR50 5' 22.70573 87.548672 55.127201 1.741365942 -0.098429 200 13 SH14980 14980 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 23.937257 120.166493 23.937257 97.229236 60.5832465 1.782352542 -0.09843 67 7 SH7678 7678 snoRNA cluster1 snR78/intergenic 31.724303 150.445271 31.724303 119.720968 75.7226355 1.879225721 -0.098445 97 13 SH13518 13518 MT COX1 intronic 22.231445 105.129593 22.231445 83.898148 53.0647965 1.724806503 -0.098449 38 30 SH8670 8670 LSR1 / U2 RNA 5' - 5 -9 5 31.866982 119.943589 75.9052855 1.880272018 -0.098462 160 79 SH5707 5707 snR34 snR34 456 477 22.736908 87.795404 55.266156 1.742459259 -0.098471 121 80 SH10700 10700 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 386 403 27.983888 113.632808 70.808348 1.850084462 -0.098532 173 101 SH5443 5443 snR31 3' 25.838141 108.49108 67.1646105 1.827140501 -0.098571 77 76 SH2515 2515 Pro1 66-72 + 3' flank 66 29.643495 116.555385 73.09944 1.86391405 -0.098583 13 15 SH17998 17998 YLR287C-A_12_713158_712537_INTRON_4_433 intron 23.424939 115.633772 23.424939 93.208833 58.316886 1.765794326 -0.098604 16 9 SH3470 3470 Trp1 3' flank 23.513565 93.902949 58.708257 1.768699187 -0.098621 104 34 SH20702 20702 YJL001W spliced 25.433354 106.353789 65.8935715 1.818843047 -0.098648 95 3 SH18085 18085 YLR344W_12_819312_820142_INTRON_20_466 intron 26.529098 135.990481 26.529098 110.461383 68.4952405 1.835660395 -0.098671 128 104 SH6863 6863 snR56 5' 25.349369 105.914021 65.631695 1.81711362 -0.098695 149 46 SH5627 5627 snR34 snR34 56 73 24.692488 102.457822 63.575155 1.803287428 -0.098704 166 3 SH15656 15656 YBR189W_2_604466_605466_INTRON_8_420 intron 28.814508 143.078369 28.814508 115.263861 72.0391845 1.857568788 -0.098712 55 32 SH17291 17291 YHR141C_8_382752_381991_INTRON_5_445 intron 21.916885 102.556275 21.916885 81.63939 51.7781375 1.714146424 -0.098756 60 59 SH15364 15364 YBL027W_2_168385_169338_INTRON_3_386 exon/intron 29.672239 145.28271 29.672239 116.610471 73.141355 1.864163002 -0.098769 72 76 SH20725 20725 YJL177W spliced 26.023661 109.344019 67.68384 1.83048499 -0.098782 104 97 SH15451 15451 YBL087C_2_60732_59815_INTRON_43_546 intron 26.479771 135.841439 26.479771 110.361668 68.4207195 1.835187637 -0.098834 20 12 SH15170 15170 MT tRNA Val 3' 28.887491 143.274753 28.887491 115.387262 72.1373765 1.858160344 -0.098859 123 104 SH5874 5874 snR35 3' 28.205467 114.13144 71.1684535 1.852287529 -0.098882 141 57 SH18621 18621 YNL096C_14_444312_443395_INTRON_145_489 exon/intron 24.735781 126.435765 24.735781 102.699984 63.7178825 1.804261335 -0.098891 64 80 SH3154 3154 Ser4 3' flank 23.926781 97.192976 60.5598785 1.782184995 -0.098902 166 88 SH13769 13769 MT COB intronic 24.107998 121.753055 24.107998 98.645057 61.3765275 1.788002314 -0.098941 143 15 SH14247 14247 MT tRNA Ser tRNA/3' 24.789387 126.775404 24.789387 102.986017 63.887702 1.805417267 -0.098949 158 21 SH8367 8367 snoRNA cluster 5 5' 24.295264 123.449137 24.295264 100.153873 62.2245685 1.793961894 -0.098953 200 77 SH7610 7610 snR189 snR189 121 137 23.558653 94.289089 58.923871 1.77029127 -0.098961 54 79 SH16174 16174 YDR305C_4_1073479_1072737_INTRON_88_176 exon/intron 24.727998 126.393524 24.727998 102.665526 63.696762 1.804117356 -0.09897 48 44 SH12477 12477 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 425.540229 1140.31274 425.540229 715.772511 570.65637 2.756374669 -0.099022 211 63 SH3837 3837 RNaseP RNaseP 151 163 26.304086 109.982798 68.143442 1.833424066 -0.099022 152 71 SH6558 6558 snR46 3' 24.79629 103.033937 63.9151135 1.805603564 -0.099093 83 5 SH12509 12509 MT_ORF6 + ORF7 (hypothetical) 5' 21.57023 99.786611 21.57023 79.216381 50.3933055 1.702372846 -0.099094 27 37 SH15185 15185 MT COX3 cox3 25.188551 129.287277 25.188551 105.098726 65.1436385 1.813872012 -0.099098 115 52 SH14568 14568 MT 21S rRNA 21S rRNA3 44.984365 184.199723 44.984365 140.215358 92.5998615 1.966610337 -0.099104 79 86 SH13587 13587 MT COX1 3' 22.376736 106.446971 22.376736 85.070235 53.7234855 1.730164181 -0.099141 89 82 SH19241 19241 YPL090C_16_378390_377286_INTRON_7_400 intron 22.314107 105.905165 22.314107 84.591058 53.4525825 1.727968692 -0.09915 118 54 SH2709 2709 Pro5 5' flank 23.813346 96.317434 60.06539 1.778624301 -0.099162 207 73 SH9819 9819 RUF5-1 5' 25.280813 105.595108 65.4379605 1.815829755 -0.099214 205 19 SH19774 19774 Negative Control 26.57826 110.603705 68.5909825 1.836267024 -0.099243 3 66 SH11903 11903 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6401 6414 137.866042 283.309391 210.5877165 2.323433035 -0.099263 129 47 SH14506 14506 MT 21S rRNA 21S rRNA3 32.690354 152.950279 32.690354 121.259925 76.9751395 1.886350485 -0.099282 63 6 SH19186 19186 YPL079W_16_406631_407534_INTRON_12_432 intron 22.809399 110.246873 22.809399 88.437474 55.6234365 1.745257817 -0.099294 214 92 SH6225 6225 snR42 5' 26.68464 110.841968 68.763304 1.837356736 -0.099296 59 52 SH21121 21121 YNL112W spliced 30.761359 118.313734 74.5375465 1.872375093 -0.099307 7 3 SH13868 13868 MT COB intronic 22.547271 107.947179 22.547271 86.399908 54.4735895 1.736185994 -0.099317 169 75 SH1303 1303 Ile2 3' flank 24.27771 100.050604 62.164157 1.793540049 -0.099328 163 5 SH8981 8981 snR17a / U3a U3a 191 207 22.633407 87.068742 54.8510745 1.73918514 -0.099331 120 35 SH16124 16124 YDR064W_4_579453_580447_INTRON_22_560 intron 26.268769 135.19121 26.268769 109.922441 68.095605 1.833119083 -0.099333 74 73 SH9708 9708 RUF4 RUF4 316 332 23.933289 97.292165 60.612727 1.782563824 -0.099377 136 75 SH9826 9826 RUF5-1 5' 23.728601 95.672798 59.7006995 1.77597942 -0.099428 26 32 SH4500 4500 U3b (snR17b) U3b 56 73 24.967387 103.963152 64.4652695 1.809325803 -0.099459 152 44 SH13710 13710 MT tRNAGlu (and 5' processing site for COB) 3' 27.170155 138.093247 27.170155 111.923092 69.5466235 1.84227605 -0.099525 175 75 SH17601 17601 YJL205C-A_10_50443_50139_INTRON_33_175 exon/intron 23.872446 119.697084 23.872446 96.824638 60.348542 1.780666782 -0.099545 214 103 SH11963 11963 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6701 6714 53.108861 152.657517 102.883189 2.012344417 -0.099556 108 29 SH16303 16303 YDR450W_4_1359912_1360787_INTRON_48_482 intron 26.953735 137.404851 26.953735 111.451116 69.2024255 1.840121316 -0.099573 117 26 SH4281 4281 telomerase RNA telomerase 441 459 22.503038 86.083117 54.2930775 1.73474446 -0.099595 64 42 SH17192 17192 YHR021C_8_148660_147862_INTRON_4_553 intron 26.798367 136.908934 26.798367 111.110567 68.954467 1.838562406 -0.099597 87 13 SH20403 20403 YFR031C-A spliced 75.820083 187.642428 131.7312555 2.119688831 -0.099601 108 7 SH1431 1431 Leu2 5' flank 24.378159 100.883482 62.6308205 1.796788101 -0.099606 81 56 SH2265 2265 Phe2 5' flank 26.174515 109.728961 67.951738 1.832200569 -0.099614 92 83 SH2276 2276 Phe2 5' flank 20.658702 73.043165 46.8509335 1.670718249 -0.099641 190 34 SH3484 3484 Tyr1 5' flank 24.35584 100.715429 62.5356345 1.796127561 -0.099645 213 55 SH896 896 Glu3 5' flank - tRNA10 10 23.86118 96.748822 60.305001 1.780353329 -0.099684 74 85 SH7438 7438 snR69 91-101 + 3' 91 24.528822 101.679255 63.1040385 1.800057154 -0.099695 19 24 SH2414 2414 Phe4 3' flank 24.318406 100.417883 62.3681445 1.794962824 -0.0997 198 50 SH6251 6251 snR42 snR42 36 52 30.917232 118.572762 74.744997 1.873582129 -0.0997 6 51 SH19010 19010 YOR182C_15_678792_678190_INTRON_4_414 intron 23.714228 118.305331 23.714228 95.591103 59.6526655 1.775629854 -0.099753 193 81 SH12869 12869 MT COX1 COX1ai1 23.915732 120.105953 23.915732 97.190221 60.5529765 1.782135496 -0.099757 99 101 SH3172 3172 Ser5 5' flank 23.299732 92.345513 57.8226225 1.762097785 -0.099774 99 8 SH17395 17395 YIL069C_9_232366_231550_INTRON_4_412 intron 26.83954 137.051375 26.83954 111.211835 69.0256875 1.839010741 -0.099776 161 2 SH13946 13946 MT COB Cytbi3 22.549336 108.007559 22.549336 86.458223 54.5037795 1.736426619 -0.099785 169 25 SH18302 18302 YML073C_13_124172_123227_INTRON_16_430 intron 24.191178 122.590788 24.191178 99.39961 61.795394 1.790956106 -0.099787 192 83 SH20349 20349 YER102W spliced 75.453917 187.088219 131.271068 2.118169019 -0.099787 172 101 SH12964 12964 MT COX1 COX1ai2 23.683174 118.032912 23.683174 95.349738 59.516456 1.774637063 -0.099792 202 22 SH4191 4191 telomerase RNA 5' - 8 8 25.392323 106.232656 65.8124895 1.818308319 -0.099796 154 19 SH16478 16478 YER102W_5_362729_363698_INTRON_1_360 intron 24.210554 122.767452 24.210554 99.556898 61.883726 1.791576455 -0.099799 123 81 SH16600 16600 YFL034C-A_6_64931_64242_INTRON_13_333 intron/exon 26.717478 136.663295 26.717478 110.945817 68.8316475 1.837788165 -0.099829 109 61 SH21292 21292 YPL175W spliced 24.918731 103.737481 64.328106 1.808400765 -0.099832 173 99 SH13526 13526 MT COX1 intronic 21.710149 100.971375 21.710149 80.261226 50.9856875 1.70744828 -0.099834 49 55 SH10073 10073 RUF6 RUF6 211 227 22.576802 86.675466 54.626134 1.737400466 -0.099835 193 80 SH6157 6157 snR39B 3' 23.769956 96.041368 59.905662 1.777467872 -0.099848 81 63 SH14808 14808 "MT tRNAs (Lys, Arg1, Gly)" intergenic 21.752845 101.324978 21.752845 80.572133 51.162489 1.708951664 -0.099944 85 11 SH20928 20928 YLR388W spliced 81.153388 195.95135 138.552369 2.141613956 -0.099948 145 35 SH7442 7442 snR69 3' 25.457609 106.591612 66.0246105 1.819705848 -0.099959 188 27 SH19874 19874 Negative Control 26.274593 109.973639 68.124116 1.83330088 -0.099988 173 31 SH6902 6902 snR56 3' 22.909506 89.289916 56.099711 1.748960624 -0.100014 88 95 SH13698 13698 MT tRNAGlu (and 5' processing site for COB) 5' 23.87841 119.797861 23.87841 96.919451 60.3989305 1.781029249 -0.100022 13 74 SH6474 6474 snR45 3' 25.194064 105.206902 65.200483 1.814250813 -0.100057 136 62 SH10509 10509 RUF8 RUF8 471 492 21.921852 81.783318 51.852585 1.714770412 -0.100072 49 27 SH3372 3372 Thr4 5' flank 25.005251 104.21299 64.6091205 1.810293829 -0.100077 66 52 SH8642 8642 snR19 / U1 RNA 3' 23.175868 91.40441 57.290139 1.758079876 -0.100082 52 37 SH15626 15626 YBR181C_2_592732_591670_INTRON_7_358 intron 24.236494 123.033241 24.236494 99.796747 62.0166205 1.792508096 -0.100098 40 34 SH12669 12669 MT_15S 3' 42.323331 177.493019 42.323331 136.169688 89.2465095 1.95059124 -0.100119 135 25 SH7590 7590 snR189 snR189 21 37 24.502569 101.577015 63.039792 1.799614772 -0.100138 97 61 SH14235 14235 MT tRNA Ser 5' 29.031587 143.720208 29.031587 115.688621 72.360104 1.859499182 -0.100188 154 22 SH18678 18678 YNL112W_14_413636_416278_INTRON_1274_2275 intron 28.544245 142.46183 28.544245 114.917585 71.730915 1.855706371 -0.100189 168 4 SH3874 3874 RNaseP RNaseP 336 348 24.756206 102.912013 63.8341095 1.805052804 -0.10019 129 96 SH6797 6797 snR50 3' 21.860234 81.354362 51.607298 1.712711121 -0.100192 159 26 SH17634 17634 YJR094W-A_10_608000_608553_INTRON_3_277 intron 22.804219 110.286934 22.804219 88.482715 55.643467 1.745414182 -0.100222 124 36 SH12313 12313 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.534926 142.43968 28.534926 114.904754 71.71984 1.855639312 -0.100225 55 95 SH16518 16518 YER117W_5_396765_397649_INTRON_43_513 3' exon 26.56796 136.206787 26.56796 110.638827 68.6033935 1.836345599 -0.100229 176 54 SH20924 20924 YLR367W spliced 26.787255 111.123442 68.9553485 1.838567958 -0.10023 4 67 SH5881 5881 snR35 3' 23.952232 97.530257 60.7412445 1.783483686 -0.100248 214 13 SH16932 16932 YGR027C_7_534779_534126_INTRON_1_312 5' exon 22.703385 109.402881 22.703385 87.699496 55.2014405 1.741950411 -0.100274 126 94 SH3294 3294 Thr2 71-72 + 3' flank 71 22.428701 85.572003 54.000352 1.732396591 -0.100287 103 54 SH8985 8985 snR17a / U3a U3a 211 227 51.977274 150.981972 101.479623 2.006378845 -0.100364 116 26 SH18572 18572 YNL012W_14_609682_611661_INTRON_106_189 3' exon 24.453427 124.791333 24.453427 101.337906 62.8956665 1.798620724 -0.100368 30 42 SH16429 16429 YER074W_5_306319_307192_INTRON_4_469 intron 86.978302 291.077754 86.978302 205.099452 146.038877 2.164468485 -0.100384 110 77 SH17532 17532 YJL177W_10_90783_91654_INTRON_310_626 exon/intron 21.817302 101.885075 21.817302 81.067773 51.4425375 1.711322383 -0.100418 48 60 SH9305 9305 RUF1 RUF1 101 118 26.625889 110.778292 68.7020905 1.836969952 -0.100421 21 52 SH18612 18612 YNL069C_14_494998_493953_INTRON_29_477 intron 22.591589 108.440813 22.591589 86.849224 54.7204065 1.738149315 -0.100486 200 86 SH1416 1416 Leu1 3' flank 26.553272 110.621454 68.587363 1.836244106 -0.100487 77 63 SH19349 19349 YPL249C-A_16_76239_75699_INTRON_17_254 intron 58.175452 217.635296 58.175452 160.459844 109.317648 2.038690279 -0.100546 150 32 SH14409 14409 MT 21S rRNA 21S rRNA3 70.783795 249.699127 70.783795 179.915332 125.3495635 2.098122826 -0.100548 126 93 SH4814 4814 snR5 3' 23.379843 93.043963 58.211903 1.765011797 -0.100561 196 20 SH15548 15548 YBR078W_2_393082_394818_INTRON_59_388 intron 25.882673 133.781835 25.882673 108.899162 67.3909175 1.828601369 -0.100582 170 45 SH10762 10762 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 696 713 43.30572 137.730864 90.518292 1.956736351 -0.100602 58 71 SH7078 7078 snR62 3' 24.613003 102.193822 63.4034125 1.802112633 -0.10061 28 40 SH21104 21104 YNL050C spliced 31.303089 119.207929 75.255509 1.876538297 -0.100616 137 27 SH15266 15266 MT 9S rRNA 9S 22.775017 110.065655 22.775017 88.290638 55.5328275 1.744549786 -0.100617 40 83 SH17780 17780 YKL180W_11_109271_110131_INTRON_310_615 intron 22.639161 108.870074 22.639161 87.230913 54.935037 1.739849421 -0.100619 107 89 SH3086 3086 Ser3 3' flank 23.183111 91.515407 57.349259 1.758527811 -0.100639 107 60 SH6399 6399 snR43 3' 21.267116 77.231408 49.249262 1.692399727 -0.100749 91 95 SH6218 6218 snR40 3' 23.096936 90.840643 56.9687895 1.755636991 -0.100751 69 70 SH754 754 Gln4 tRNA 41 53 30.296833 117.68773 73.9922815 1.869186419 -0.100767 80 54 SH6798 6798 snR50 3' 23.905542 97.209928 60.557735 1.782169623 -0.100769 192 52 SH17929 17929 YLR078C_12_286560_285737_INTRON_4_92 3' exon 28.213989 141.478203 28.213989 114.264214 71.2391015 1.852718433 -0.10077 197 98 SH18082 18082 YLR344W_12_819312_820142_INTRON_20_466 intron 23.090044 112.878296 23.090044 90.788252 56.939148 1.755410964 -0.100775 201 104 SH5407 5407 snR31 snR31 101 120 23.583685 94.666922 59.1253035 1.771773383 -0.10083 138 10 SH9760 9760 RUF4 RUF4 576 592 26.241323 109.948955 68.095139 1.833116111 -0.100834 62 70 SH734 734 Gln4 5' flank 24.741581 102.887772 63.8146765 1.804920572 -0.100842 145 81 SH21276 21276 YPL129W spliced 27.163536 111.988235 69.5758855 1.842458742 -0.100865 160 16 SH4567 4567 U3b (snR17b) U3b 391 405 28.32173 114.502002 71.411866 1.853770381 -0.10087 29 86 SH2651 2651 Pro4 5' flank 25.645982 107.666696 66.656339 1.823841457 -0.100874 191 48 SH20646 20646 YHR203C spliced 28.383898 114.635854 71.509876 1.854366025 -0.100875 174 88 SH14751 14751 MT ORF11; tRNA Leu; tRNA Gln ORF11 34.150189 156.710687 34.150189 123.560498 78.8553435 1.896831128 -0.100895 186 60 SH21112 21112 YNL096C spliced 26.486088 110.496738 68.491413 1.835636126 -0.100899 7 45 SH10625 10625 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 11 31 23.821394 96.55329 60.187342 1.779505164 -0.1009 134 34 SH15330 15330 YAL003W_1_142172_143158_INTRON_81_446 intron/exon 21.723257 101.164423 21.723257 80.441166 51.0822115 1.708269691 -0.10091 200 55 SH6527 6527 snR46 snR46 126 143 33.119394 122.011137 77.5652655 1.889667283 -0.100921 101 82 SH2122 2122 Met1 5' flank - tRNA12 12 24.020493 98.144692 61.0825925 1.785917461 -0.100932 209 75 SH12819 12819 MT COX1 COX1ai1 24.048982 121.426727 24.048982 98.377745 61.2133635 1.786846243 -0.100979 91 31 SH13429 13429 MT COX1 intronic 22.756536 109.93732 22.756536 88.180784 55.46866 1.744047674 -0.100993 168 46 SH18407 18407 YMR125W_13_517538_520445_INTRON_26_347 intron 22.434679 107.116394 22.434679 85.681715 54.058197 1.732861557 -0.100997 196 24 SH7234 7234 snR65 5' 30.40221 117.864 74.133105 1.870012191 -0.101026 78 98 SH1377 1377 Leu1 5' flank 23.974606 97.7885 60.881553 1.784485722 -0.101041 26 79 SH13599 13599 MT ATP8/AAP1 ATP8 23.067491 112.702141 23.067491 90.63465 56.8510705 1.754738647 -0.101042 134 29 SH5734 5734 snR34 3' 25.120835 104.901692 65.0112635 1.812988607 -0.101043 139 68 SH4511 4511 U3b (snR17b) U3b 111 127 23.820191 96.557921 60.189056 1.779517532 -0.101043 89 97 SH14859 14859 MT tRNA Ser2; tRNA Arg2 tRNA Ser 23.85118 119.655946 23.85118 96.804766 60.327973 1.780518733 -0.101048 195 5 SH2455 2455 Phe5 tRNA-intron/exon 46 60 26.513351 110.567444 68.5403975 1.835946619 -0.101074 190 3 SH19775 19775 Negative Control 26.700822 110.9826 68.841711 1.837851656 -0.101078 16 69 SH20671 20671 YIL069C spliced 24.926135 103.882096 64.4041155 1.80891362 -0.101129 73 50 SH17851 17851 YKR095W-A_11_625432_625839_INTRON_39_113 5' exon 33.505383 155.114259 33.505383 122.608876 78.0571295 1.892412576 -0.10115 103 65 SH16258 16258 YDR424C_4_1319830_1319376_INTRON_26_121 5' exon 47.671138 191.145895 47.671138 144.474757 96.0729475 1.982601115 -0.101165 152 56 SH12606 12606 MT_15S MT_15S 45.881045 186.612377 45.881045 141.731332 93.8061885 1.97223149 -0.101183 137 46 SH8197 8197 snoRNA cluster 3; intergenic 21.992163 103.37023 21.992163 82.378067 52.185115 1.717546645 -0.101188 146 61 SH2219 2219 Phe1 5' flank 39.678972 132.188541 85.9337565 1.934163797 -0.101191 161 94 SH2635 2635 Pro3 3' flank 24.483467 101.561228 63.0223475 1.799494576 -0.101196 11 73 SH12147 12147 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7621 7637 35.862601 126.227209 81.044905 1.908725718 -0.10122 42 70 SH3121 3121 Ser4 tRNA 11 25 3702.324682 4849.153158 4275.73892 3.631011179 -0.101221 139 67 SH21100 21100 YNL050C spliced 23.859292 96.886592 60.372942 1.78084234 -0.101222 95 19 SH13899 13899 MT COB intronic 22.001782 103.453435 22.001782 82.451653 52.2267175 1.717892731 -0.101245 154 37 SH2484 2484 Pro1 5' flank 37.705412 129.119617 83.4125145 1.921231213 -0.101254 43 14 SH9725 9725 RUF4 RUF4 401 416 24.219981 99.782507 62.001244 1.792400403 -0.101261 105 15 SH16388 16388 YER044C-A_5_239773_238459_INTRON_64_151 5' exon 135.31433 414.080268 135.31433 279.765938 207.540134 2.317102093 -0.101297 86 31 SH15531 15531 YBR048W_2_332790_333771_INTRON_46_556 3' exon 30.522832 147.58765 30.522832 118.064818 74.293825 1.870952718 -0.101311 83 103 SH9769 9769 RUF4 RUF4 621 633 24.811354 103.293171 64.0522625 1.806534475 -0.101318 111 60 SH21835 21835 copy of SH16600 24.742964 102.935242 63.839103 1.805086776 -0.10134 174 19 SH17837 17837 YKR094C_11_618384_617630_INTRON_9_376 intron 23.130733 113.29862 23.130733 91.167887 57.14931 1.757010991 -0.101366 133 69 SH3418 3418 Trp1 5' flank 34.002022 123.369008 78.685515 1.895894792 -0.101388 34 82 SH14705 14705 MT tRNA thr2 tRNA 27.934927 140.634502 27.934927 113.699575 70.817251 1.850139064 -0.101393 16 42 SH2156 2156 Met2 5' flank 24.329882 100.686315 62.5080985 1.795936288 -0.1014 29 102 SH2363 2363 Phe3 3' flank 44.98608 140.384908 92.685494 1.967011769 -0.101407 166 70 SH18968 18968 YOR096W_15_505793_506766_INTRON_145_545 exon/intron 24.168332 122.554915 24.168332 99.386583 61.7774575 1.790830031 -0.101465 179 89 SH17305 17305 YHR203C_8_505526_504472_INTRON_15_283 intron 26.305523 135.435156 26.305523 110.129633 68.217578 1.833896296 -0.10148 27 6 SH15761 15761 YCR031C_3_178212_177492_INTRON_8_314 intron 29.314041 144.519429 29.314041 116.205388 72.7597145 1.861890986 -0.101495 62 68 SH2826 2826 Pro7 5' flank 24.832967 103.421369 64.127168 1.807042061 -0.101496 181 36 SH9677 9677 RUF4 RUF4 161 177 28.11008 114.084938 71.097509 1.851854385 -0.101507 55 62 SH4463 4463 telomerase RNA 3' 59.796605 163.032563 111.414584 2.046942043 -0.101524 44 56 SH16828 16828 YGL178W_7_167356_170575_INTRON_4_643 intron 25.137888 129.169488 25.137888 105.0316 65.084744 1.813479201 -0.101527 136 47 SH1302 1302 Ile2 3' flank 21.986509 82.367494 52.1770015 1.717479118 -0.101548 190 32 SH14151 14151 MT COB intronic 26.63347 136.497257 26.63347 110.863787 68.7486285 1.837264039 -0.101589 113 68 SH20499 20499 YGR001C spliced 25.331729 106.061739 65.696734 1.81754378 -0.101593 141 51 SH5808 5808 snR35 snR35 226 244 53.080471 152.785666 102.9330685 2.01255492 -0.101672 16 81 SH14076 14076 MT COB Cytbi4 22.251896 105.590223 22.251896 84.338327 53.2951115 1.726687375 -0.101677 206 88 SH4501 4501 U3b (snR17b) U3b 61 78 26.626076 110.853412 68.739744 1.83720791 -0.101691 34 29 SH14403 14403 MT 21S rRNA 21S rRNA3 22.973189 111.923647 22.973189 89.950458 56.4618235 1.7517549 -0.101703 187 91 SH15772 15772 YCR097W_3_293828_294314_INTRON_106_159 3' exon 26.691242 136.690016 26.691242 110.998774 68.845008 1.837872455 -0.101712 79 81 SH13923 13923 MT COB Cytbi3 24.191906 122.796563 24.191906 99.604657 61.8982815 1.791678592 -0.101739 159 69 SH18879 18879 YNR053C_14_723108_721117_INTRON_811_1341 intron 24.45157 124.889538 24.45157 101.437968 62.944769 1.798959644 -0.101748 80 20 SH2574 2574 Pro2 3' flank 21.942879 82.074286 52.0085825 1.716075017 -0.101776 90 31 SH9809 9809 RUF4 3' 24.818845 103.371288 64.0950665 1.806824602 -0.101795 209 83 SH8990 8990 snR17a / U3a U3a 236 252 111.798526 243.967789 177.8831575 2.25013483 -0.101796 183 79 SH16985 16985 YGR118W_7_726968_727725_INTRON_66_385 exon/intron 25.865978 133.781854 25.865978 108.915876 67.390927 1.82860143 -0.101817 76 76 SH3740 3740 Val4 5' flank 24.056832 98.52567 61.291251 1.787398486 -0.10182 109 101 SH16948 16948 YGR027C_7_534779_534126_INTRON_1_312 intron 22.325725 106.242885 22.325725 84.91716 53.6214425 1.729338493 -0.101823 125 70 SH20275 20275 YDR447C spliced 106.747745 236.191422 171.4695835 2.234187093 -0.101824 73 18 SH5366 5366 snR30 3' 23.233293 92.024422 57.6288575 1.76064001 -0.101835 108 41 SH19911 19911 YAL003W spliced 25.746244 108.284785 67.0155145 1.826175356 -0.101884 136 98 SH15168 15168 MT tRNA Val 3' 22.326649 106.2577 22.326649 84.931051 53.62885 1.729398484 -0.1019 98 50 SH7209 7209 snR64 3' 22.20134 83.976068 53.088704 1.725002123 -0.101951 84 84 SH9203 9203 snR7 U5 RNA 3' 22.065066 82.964861 52.5149635 1.720283068 -0.101955 116 34 SH7114 7114 snR63 snR63 76 95 22.42905 85.725599 54.0773245 1.733015197 -0.101971 131 88 SH15361 15361 YBL026W_2_170585_171000_INTRON_55_182 3' exon 26.68282 136.678546 26.68282 110.995726 68.839273 1.837836275 -0.101976 58 64 SH16172 16172 YDR305C_4_1073479_1072737_INTRON_88_176 5' exon 25.207427 129.644491 25.207427 105.437064 65.3222455 1.815061106 -0.101988 37 25 SH21754 21754 copy of SH13179 23.138816 91.291897 57.2153565 1.757512608 -0.101992 144 57 SH4368 4368 telomerase RNA telomerase 876 894 29.012466 115.766184 72.389325 1.859674527 -0.102112 14 14 SH20889 20889 YLR275W spliced 23.471627 93.911426 58.6915265 1.768575405 -0.10212 192 40 SH12164 12164 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7706 7721 1093.529518 1649.679703 1371.604611 3.137228936 -0.102141 211 77 SH5490 5490 snR32 snR32 111 127 29.980487 117.28181 73.6311485 1.867061575 -0.102197 163 48 SH17387 17387 YIL069C_9_232366_231550_INTRON_4_412 intron 26.317024 135.514457 26.317024 110.197433 68.2572285 1.83414865 -0.102202 110 52 SH5667 5667 snR34 snR34 256 273 25.284046 105.860879 65.5724625 1.816721493 -0.102212 76 44 SH18180 18180 YLR448W_12_1028848_1029762_INTRON_16_399 intron 25.579543 132.007269 25.579543 107.427726 66.5036345 1.822845381 -0.102221 214 12 SH17383 17383 YIL069C_9_232366_231550_INTRON_4_412 5' exon 25.09351 128.950546 25.09351 104.857036 64.975273 1.812748113 -0.102254 112 102 SH18326 18326 YML094W_13_82275_82849_INTRON_17_99 5' exon 25.517502 131.621184 25.517502 107.103682 66.310592 1.821582905 -0.102282 148 62 SH21239 21239 YOR312C spliced 123.000722 261.176052 192.088387 2.28350111 -0.102295 42 77 SH12671 12671 MT_15S 3' 36.993621 164.074346 36.993621 128.080725 82.537173 1.91664959 -0.102311 89 56 SH326 326 Arg5 5' flank 22.174673 83.804144 52.9894085 1.724189072 -0.102311 53 78 SH15754 15754 YCR031C_3_178212_177492_INTRON_8_314 intron 24.825535 127.276577 24.825535 103.451042 64.1382885 1.807117367 -0.102343 156 68 SH13704 13704 MT tRNAGlu (and 5' processing site for COB) 5' / tRNA 24.603404 125.887035 24.603404 102.283631 63.4435175 1.802387254 -0.102358 8 61 SH9198 9198 snR7 U5 RNA 3' 28.434499 114.835709 71.635104 1.855125896 -0.102372 186 93 SH10788 10788 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 826 847 49.300611 147.075654 98.1881325 1.992059 -0.102393 150 39 SH1707 1707 Leu6 3' flank 25.302576 105.974318 65.638447 1.817158297 -0.102397 207 50 SH20481 20481 YGL226C-A spliced 26.363191 110.312093 68.337642 1.834659989 -0.102406 177 87 SH9735 9735 RUF4 RUF4 451 465 24.083192 98.797093 61.4401425 1.788452214 -0.102409 195 72 SH6304 6304 snR42 snR42 301 316 23.828327 96.759273 60.2938 1.780272656 -0.102421 10 90 SH20834 20834 YKR095W-A spliced 27.093544 111.927482 69.510513 1.842050494 -0.102427 47 84 SH2942 2942 Ser1 5' flank 23.305778 92.646503 57.9761405 1.763249301 -0.10245 194 69 SH11058 11058 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2176 2193 34207.10059 34237.37077 34222.23568 4.534308378 -0.102493 181 46 SH18259 18259 YML056C_13_164176_162194_INTRON_461_868 intron 23.186864 113.912182 23.186864 91.725318 57.456091 1.759336076 -0.102516 165 72 SH11959 11959 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6681 6694 42.625829 136.804761 89.715295 1.95286649 -0.102566 212 58 SH8695 8695 LSR1 / U2 RNA U2 116 135 79.620147 193.866605 136.743376 2.135906298 -0.102583 155 74 SH5724 5724 snR34 541-550 + 3' 541 24.852478 103.612605 64.2325415 1.807755106 -0.102585 116 56 SH301 301 Arg4 3' flank 26.871162 111.448319 69.1597405 1.839853355 -0.102598 44 58 SH15953 15953 YDL130W_4_229906_230527_INTRON_115_415 exon/intron 25.261522 130.035538 25.261522 105.774016 65.517769 1.8163591 -0.102601 83 40 SH15276 15276 MT 9S rRNA 9S 23.740074 118.818275 23.740074 96.078201 59.9091375 1.777493067 -0.102626 97 58 SH17240 17240 YHR079C-A_8_262554_262193_INTRON_114_199 intron 31.266018 149.534775 31.266018 119.268757 75.2673875 1.876606842 -0.102639 101 87 SH1144 1144 His1 5' flank 21.786483 81.033324 51.4099035 1.711046789 -0.102674 136 3 SH17367 17367 YIL052C_9_257061_256224_INTRON_38_509 intron 23.195951 114.009696 23.195951 91.813745 57.504848 1.75970446 -0.102681 162 24 SH4581 4581 U3b (snR17b) 461-462 + 3' 461 22.39727 85.54575 53.97151 1.732164569 -0.102699 7 6 SH8461 8461 snoRNA cluster 5 snR128/3' 45.516328 185.808019 45.516328 141.291691 93.4040095 1.970365519 -0.102746 143 18 SH15842 15842 YDL075W_4_322225_322987_INTRON_58_478 intron 26.951811 137.587525 26.951811 111.635714 69.2937625 1.840694143 -0.102762 169 27 SH8971 8971 snR17a / U3a U3a 141 156 24.534618 101.963802 63.24921 1.801055105 -0.102876 183 104 SH16490 16490 YER102W_5_362729_363698_INTRON_1_360 3' exon 32.711413 153.217655 32.711413 121.506242 77.1088275 1.887104099 -0.102886 68 100 SH10171 10171 RUF6 RUF6 701 713 23.248943 92.245735 57.747339 1.761531977 -0.10289 23 31 SH15417 15417 YBL059W_2_110555_111205_INTRON_287_355 intron 24.690675 126.477486 24.690675 102.786811 63.738743 1.804403494 -0.102908 77 9 SH20890 20890 YLR275W spliced 23.301308 92.657641 57.9794745 1.763274275 -0.102934 151 24 SH14960 14960 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 22.683819 109.474955 22.683819 87.791136 55.2374775 1.742233838 -0.102936 197 52 SH7485 7485 snR71 snR71 41 62 24.15186 99.40468 61.77827 1.790835742 -0.102945 62 92 SH9990 9990 RUF5-1 RUF5-1 756 772 25.148378 105.205209 65.1767935 1.814092991 -0.10296 101 31 SH16071 16071 YDR005C_4_458099_456832_INTRON_7_86 3' exon 85.635708 287.964571 85.635708 203.328863 144.4822855 2.159814603 -0.103023 42 19 SH14142 14142 MT COB intronic 47.423345 190.655459 47.423345 144.232114 95.8277295 1.981491198 -0.103046 152 25 SH7858 7858 snoRNA cluster1 intergenic 22.77627 110.301937 22.77627 88.525667 55.6509685 1.745472727 -0.103052 65 8 SH2169 2169 Met2 5' flank 30.474699 118.091773 74.283236 1.870890815 -0.103073 9 37 SH7023 7023 snR62 5' 25.56733 107.437097 66.5022135 1.822836101 -0.103101 63 50 SH19574 19574 AEP2/ATP13 0.6 25.043317 104.663183 64.85325 1.811931745 -0.103121 160 15 SH18169 18169 YLR448W_12_1028848_1029762_INTRON_16_399 intron 32.557839 152.843405 32.557839 121.285566 76.9217025 1.886048888 -0.103135 171 52 SH10780 10780 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 786 806 24.597679 102.316303 63.456991 1.802479475 -0.10314 2 69 SH337 337 Arg5 tRNA 21 35 24.003776 98.236449 61.1201125 1.786184145 -0.103173 173 57 SH9297 9297 RUF1 RUF1 61 79 22.425173 85.804843 54.115008 1.733317727 -0.103188 33 10 SH17298 17298 YHR141C_8_382752_381991_INTRON_5_445 intron/exon 22.21349 105.392231 22.21349 84.178741 53.1961155 1.72587992 -0.103199 78 40 SH15138 15138 MT tRNA Thr1 reverse complement 5' 21.655566 100.80369 21.655566 80.148124 50.901845 1.706733524 -0.103204 115 42 SH11547 11547 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4621 4638 2460.637716 3393.634422 2927.136069 3.466442911 -0.103224 108 100 SH16690 16690 YGL030W_7_439087_439634_INTRON_4_233 intron 22.452687 107.475775 22.452687 86.023088 54.2378875 1.734302766 -0.10325 135 22 SH7863 7863 snoRNA cluster1 intergenic/snR73 22.395307 106.979588 22.395307 85.584281 53.989794 1.73231167 -0.103299 84 35 SH2310 2310 Phe2 3' flank 24.09817 99.01068 61.554425 1.789259279 -0.103326 128 83 SH21637 21637 copy of SH8142 3563.110044 4695.541138 4129.325591 3.615879128 -0.103369 145 53 SH8366 8366 snoRNA cluster4 3' 26.591635 136.467569 26.591635 110.875934 68.7337845 1.837170257 -0.10337 142 11 SH15605 15605 YBR119W_2_479296_480281_INTRON_9_97 intron 22.454774 107.505072 22.454774 86.050298 54.252536 1.734420044 -0.103373 75 70 SH7795 7795 snoRNA cluster1 snR75 40.587408 173.334343 40.587408 133.746935 87.1671715 1.940352954 -0.103388 85 85 SH6541 6541 snR46 196-197 + 3' 196 23.893846 97.378154 60.636 1.782730544 -0.103389 68 12 SH5542 5542 snR33 5' - 13 -4 13 27.459917 112.788861 70.124389 1.84586909 -0.103418 94 73 SH17779 17779 YKL180W_11_109271_110131_INTRON_310_615 intron 21.090286 96.304935 21.090286 76.214649 48.6524675 1.687104871 -0.103429 158 34 SH3431 3431 Trp1 5' flank - tRNA4 4 24.634241 102.534467 63.584354 1.803350263 -0.103462 75 33 SH8870 8870 LSR1 / U2 RNA U2 991 1006 25.616632 107.730775 66.6737035 1.823954579 -0.103477 184 35 SH13306 13306 MT COX1 COX1-ai5a 24.100343 122.148126 24.100343 99.047783 61.574063 1.789397812 -0.103519 85 96 SH4856 4856 snR8 snR8 61 76 4676.138545 5959.48171 5317.810128 3.725732827 -0.103539 138 2 SH20553 20553 YHL001W spliced 36.687442 127.679608 82.183525 1.914784765 -0.103539 175 39 SH4756 4756 snR5 5' 23.066406 90.867778 56.967092 1.755624051 -0.103588 156 51 SH1491 1491 Leu3 5' flank 22.501864 86.434593 54.4682285 1.736143251 -0.10359 100 32 SH13053 13053 MT COX1 COX1ai2 21.797142 101.981274 21.797142 81.184132 51.490637 1.711728265 -0.103591 185 31 SH17970 17970 YLR185W_12_522665_523290_INTRON_8_366 intron 24.145945 122.568799 24.145945 99.422854 61.7843995 1.79087883 -0.103591 153 87 SH7403 7403 snR69 5' 23.557526 94.730531 59.1440285 1.771910902 -0.103605 28 87 SH15621 15621 YBR181C_2_592732_591670_INTRON_7_358 intron 25.524428 131.777028 25.524428 107.2526 66.388514 1.822092948 -0.103616 70 23 SH15910 15910 YDL083C_4_307788_306925_INTRON_25_456 intron 22.525363 108.14689 22.525363 86.621527 54.573445 1.73698137 -0.103641 12 69 SH21370 21370 Leu1_5 spliced 37.405911 128.811248 83.1085795 1.919645859 -0.103663 129 56 SH16284 16284 YDR447C_4_1355542_1354818_INTRON_4_317 intron/exon 49.460904 195.879992 49.460904 147.419088 98.439996 1.993171587 -0.103674 57 39 SH6053 6053 snR37 snR37 181 197 83.539008 200.131735 141.8353715 2.151784551 -0.103684 40 74 SH20161 20161 YDL130W spliced 29.243603 116.21863 72.7311165 1.861720255 -0.103696 169 80 SH8866 8866 LSR1 / U2 RNA U2 971 988 24.533994 102.027186 63.28059 1.80127052 -0.103709 63 5 SH14330 14330 MT VAR1 includes 5’ processing site VAR1 22.792623 110.508014 22.792623 88.715391 55.754007 1.746276085 -0.103713 202 23 SH5253 5253 snR30 snR30 116 130 25.493445 107.096709 66.295077 1.821481279 -0.103718 123 62 SH18743 18743 YNL162W_14_331319_332151_INTRON_5_516 intron 26.990282 137.770777 26.990282 111.780495 69.3853885 1.841268024 -0.103775 38 99 SH20148 20148 YDL115C spliced 222.111976 412.020484 317.06623 2.501149989 -0.103801 42 22 SH13454 13454 MT COX1 intronic 23.057986 112.881165 23.057986 90.823179 56.9405825 1.755421906 -0.103823 62 42 SH6523 6523 snR46 snR46 106 125 22.94057 89.894697 56.4176335 1.751414865 -0.103852 5 90 SH13618 13618 MT ATP6 5' / ATP6 25.011652 128.571596 25.011652 104.559944 64.785798 1.811479813 -0.103901 212 70 SH12151 12151 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7641 7659 29.005898 115.856317 72.4311075 1.859925126 -0.103907 6 76 SH4367 4367 telomerase RNA telomerase 871 888 29.732167 116.993968 73.3630675 1.865477482 -0.103911 131 74 SH19305 19305 YPL198W_16_173151_174701_INTRON_12_420 intron 24.244826 123.511867 24.244826 100.267041 62.2559335 1.79418075 -0.104024 15 45 SH8954 8954 snR17a / U3a U3a 56 75 23.228669 92.202 57.7153345 1.761291217 -0.104094 88 61 SH8191 8191 snoRNA cluster 3; intergenic 22.219754 105.526584 22.219754 84.30683 53.263292 1.726428005 -0.104109 210 60 SH7034 7034 snR62 5' 26.385679 110.461934 68.4238065 1.835207231 -0.104109 54 38 SH7954 7954 snoRNA cluster 2 5' 23.902708 120.424481 23.902708 97.521773 60.7122405 1.78327626 -0.104118 147 18 SH9090 9090 snR14 / U4 RNA U4 66 87 26.759434 111.294222 69.026828 1.839017917 -0.104164 108 70 SH14939 14939 MT tRNA Asn 3' 22.329262 106.483118 22.329262 85.153856 53.741559 1.730310261 -0.104178 44 38 SH13241 13241 MT COX1 COX1-ai4 25.104784 129.181382 25.104784 105.076598 65.090691 1.813518882 -0.104196 92 80 SH19320 19320 YPL198W_16_173151_174701_INTRON_12_420 3' exon 24.566629 125.804521 24.566629 102.237892 63.4022605 1.802104742 -0.104197 120 75 SH10285 10285 RUF7 RUF7 36 53 27.46262 112.842392 70.152506 1.84604319 -0.104213 79 38 SH2765 2765 Pro6 5' flank 25.71804 108.333084 67.025562 1.826240464 -0.104218 40 89 SH21937 21937 copy of SH19620 23.917555 97.651374 60.7844645 1.783792595 -0.104226 54 32 SH17339 17339 YIL018W_9_316766_317930_INTRON_5_404 intron 23.065739 112.989511 23.065739 90.923772 56.9947555 1.755834895 -0.104233 178 53 SH8122 8122 snoRNA cluster 3; snR41 23.725991 118.851698 23.725991 96.125707 59.925849 1.777614196 -0.104241 141 70 SH17407 17407 YIL069C_9_232366_231550_INTRON_4_412 3' exon 26.202432 135.264475 26.202432 110.062043 68.1322375 1.833352652 -0.104256 158 53 SH15468 15468 YBL087C_2_60732_59815_INTRON_43_546 intron 30.619095 147.99976 30.619095 118.380665 74.49988 1.872155573 -0.104264 154 86 SH12864 12864 MT COX1 COX1ai1 23.533071 117.135171 23.533071 94.6021 59.0675855 1.771349219 -0.104267 23 83 SH14794 14794 "MT tRNAs (Lys, Arg1, Gly)" 5' / tRNA Lys 24.826622 127.441184 24.826622 103.614562 64.220592 1.807674305 -0.104286 137 13 SH2436 2436 Phe5 5' flank 26.554156 110.846825 68.7004905 1.836959838 -0.104288 34 54 SH3155 3155 Ser4 3' flank 24.689826 102.894339 63.7920825 1.80476678 -0.104296 134 33 SH95 95 Ala2 3' flank 23.782516 96.581395 60.1819555 1.779466295 -0.104305 151 49 SH1071 1071 Gly3 3' flank 24.68461 102.867671 63.7761405 1.804658234 -0.104306 60 62 SH20370 20370 YER133W spliced 23.693485 95.874909 59.784197 1.7765864 -0.104314 214 96 SH16140 16140 YDR092W_4_629869_630598_INTRON_31_298 intron 26.487676 136.188824 26.487676 110.701148 68.594412 1.836288738 -0.104321 55 94 SH20311 20311 YER007C-A spliced 24.924789 104.136481 64.530635 1.809765939 -0.104333 50 29 SH14323 14323 MT VAR1 includes 5’ processing site VAR1 22.69277 109.683862 22.69277 87.991092 55.341931 1.743054309 -0.104349 197 55 SH2780 2780 Pro6 5' flank - tRNA7 7 57.328207 159.480166 108.4041865 2.035046055 -0.104402 111 57 SH15704 15704 YBR220C_2_663261_662457_INTRON_302_722 intron 23.023426 112.62869 23.023426 90.605264 56.814345 1.754458004 -0.104421 32 74 SH11034 11034 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2056 2069 3768.253594 4935.059042 4351.656318 3.638654589 -0.104438 137 56 SH4557 4557 U3b (snR17b) U3b 341 358 22.355285 85.378514 53.8668995 1.731321979 -0.104449 31 71 SH8322 8322 snoRNA cluster4 intergenic 23.384595 115.837894 23.384595 93.453299 58.418947 1.766553725 -0.104451 195 49 SH7891 7891 snoRNA cluster1 intergenic 24.158561 122.772298 24.158561 99.613737 61.886149 1.791593459 -0.104463 17 12 SH3111 3111 Ser4 5' flank 23.605787 95.19621 59.4009985 1.773793745 -0.104475 122 96 SH9807 9807 RUF4 3' 29.46727 116.613575 73.0404225 1.863563277 -0.104488 168 88 SH15090 15090 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 21.945754 103.268622 21.945754 82.322868 52.134311 1.717123638 -0.104526 191 78 SH19756 19756 Negative Control 41.521577 135.258884 88.3902305 1.946404266 -0.104534 15 54 SH12982 12982 MT COX1 COX1ai2 22.682284 109.608976 22.682284 87.926692 55.304488 1.742760376 -0.104541 148 19 SH18580 18580 YNL044W_14_545264_545873_INTRON_25_103 intron/exon 22.547096 108.419136 22.547096 86.87204 54.709568 1.738063285 -0.104541 110 86 SH4061 4061 SRP RNA SRP RNA 196 213 105.074182 233.965772 169.519977 2.229220885 -0.104555 164 88 SH19172 19172 YPL079W_16_406631_407534_INTRON_12_432 intron 26.417553 135.978795 26.417553 110.561242 68.4893975 1.835623346 -0.104593 160 53 SH19626 19626 RNA14 2.2 39.725755 132.492902 86.1093285 1.935050203 -0.104626 204 23 SH1366 1366 Leu1 5' flank 25.037937 104.759027 64.898482 1.812234539 -0.104633 175 65 SH15272 15272 MT 9S rRNA 9S 24.073877 122.02167 24.073877 98.947793 61.510835 1.788951623 -0.104634 153 69 SH3216 3216 Thr1 5' flank 22.650872 87.689948 55.17041 1.741706211 -0.104638 173 98 SH14283 14283 MT VAR1 includes 5’ processing site VAR1 23.654626 118.253336 23.654626 95.59871 59.626668 1.775440541 -0.104638 17 74 SH1842 1842 Leu9 5' flank 26.970427 111.789096 69.3797615 1.841232803 -0.104657 137 62 SH19400 19400 YPR063C_16_678315_677807_INTRON_42_127 intron 24.085153 122.126785 24.085153 99.041632 61.5633925 1.789322544 -0.104663 170 79 SH13872 13872 MT COB intronic 24.434857 125.017338 24.434857 101.582481 63.008669 1.799400306 -0.104664 27 34 SH10743 10743 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 601 617 27.226551 112.353258 69.7899045 1.843792604 -0.104675 106 31 SH19935 19935 YBL026W spliced 25.201456 105.627919 65.4146875 1.815675271 -0.104675 44 60 SH13487 13487 MT COX1 intronic 23.184742 114.101704 23.184742 91.916962 57.550852 1.760051757 -0.104693 205 99 SH21544 21544 copy of SH4253 23.782302 96.619461 60.2008815 1.779602851 -0.104706 110 11 SH14393 14393 MT 21S rRNA 21S rRNA3 172.882487 509.517005 172.882487 337.634518 255.2585025 2.406980217 -0.104808 147 8 SH16148 16148 YDR092W_4_629869_630598_INTRON_31_298 intron 37.364662 165.187583 37.364662 128.822921 83.0937915 1.919568576 -0.104834 75 76 SH19970 19970 YBL072C spliced 101.038324 227.723148 164.380736 2.215850921 -0.104849 53 47 SH18416 18416 YMR133W_13_536206_537608_INTRON_1243_1358 exon/intron 24.26063 123.741783 24.26063 100.481153 62.3708915 1.794981952 -0.104858 127 45 SH15227 15227 MT COX3 cox3 22.703888 109.829344 22.703888 88.125456 55.414672 1.743624767 -0.104862 176 59 SH15653 15653 YBR189W_2_604466_605466_INTRON_8_420 intron 22.311763 106.398568 22.311763 85.086805 53.699284 1.729968495 -0.104938 171 15 SH6656 6656 snR48 106-113 + 3' 106 22.056965 83.159099 52.608032 1.721052056 -0.104968 111 32 SH6881 6881 snR56 snR56 36 53 22.876858 89.501519 56.1891885 1.74965276 -0.105028 13 66 SH14771 14771 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu 23.524126 117.129944 23.524126 94.605818 59.064972 1.771330002 -0.105032 20 22 SH12356 12356 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.418781 136.008509 26.418781 110.589728 68.5042545 1.835717544 -0.105032 9 38 SH7882 7882 snoRNA cluster1 snR73 25.584787 132.27793 25.584787 107.693143 66.638965 1.823728243 -0.105035 18 12 SH2266 2266 Phe2 5' flank 23.603208 95.230531 59.4168695 1.773909766 -0.105035 86 36 SH9522 9522 RUF3 5' - 14 -4 14 28.274421 114.653589 71.464005 1.854087351 -0.105036 71 78 SH10061 10061 RUF6 RUF6 151 172 22.387908 85.688613 54.0382605 1.732701361 -0.105101 172 80 SH19369 19369 YPR028W_16_623522_624197_INTRON_52_184 intron/exon 24.252709 123.695463 24.252709 100.442754 62.3477315 1.794820656 -0.10511 163 23 SH3915 3915 RNase MRP 5' - 8 8 24.207829 100.079743 62.143786 1.793397708 -0.10512 207 55 SH14910 14910 MT tRNA Tyr 5' 24.07404 122.077768 24.07404 99.003728 61.538884 1.789149616 -0.105172 195 76 SH7516 7516 snR79 5' 25.38987 106.671642 66.030756 1.81974627 -0.105208 141 13 SH11927 11927 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6521 6534 24.648702 102.751833 63.7002675 1.804141256 -0.105215 46 19 SH3687 3687 Val3 5' flank 24.706045 103.05423 63.8801375 1.805365842 -0.105218 65 54 SH6896 6896 snR56 3' 22.992795 90.43956 56.7161775 1.753706953 -0.10524 98 47 SH1492 1492 Leu3 5' flank 24.269624 100.594693 62.4321585 1.79540835 -0.105251 118 80 SH2592 2592 Pro3 5' flank 24.303005 100.866369 62.584687 1.796468085 -0.105254 119 65 SH19987 19987 YBL092W spliced 35.484291 125.87989 80.6820905 1.906777142 -0.105266 131 62 SH17740 17740 YKL156W_11_158616_159214_INTRON_4_353 intron 22.976896 112.293422 22.976896 90.316526 56.646711 1.753174699 -0.105274 111 43 SH4359 4359 telomerase RNA telomerase 831 847 25.213848 105.743667 65.4787575 1.81610043 -0.105279 165 17 SH17847 17847 YKR094C_11_618384_617630_INTRON_9_376 intron 23.821587 119.813121 23.821587 96.991534 60.4065605 1.781084108 -0.105299 62 54 SH20769 20769 YKL002W spliced 40.061957 133.064405 86.563181 1.937333207 -0.105328 181 103 SH21586 21586 copy of SH6043 24.596088 102.487201 63.5416445 1.80305845 -0.105371 166 94 SH16019 16019 YDL189W_4_122079_123590_INTRON_1_99 exon/intron 33.502907 155.363791 33.502907 122.860884 78.1818955 1.893106196 -0.105407 207 96 SH20113 20113 YDL075W spliced 30.15024 117.726679 73.9384595 1.868870398 -0.105415 148 17 SH7855 7855 snoRNA cluster1 intergenic 24.631609 126.310548 24.631609 102.678939 63.655274 1.803834392 -0.105428 206 2 SH12958 12958 MT COX1 COX1ai2 35.950144 161.585604 35.950144 126.63546 81.292802 1.910052093 -0.105448 149 101 SH17810 17810 YKR057W_11_551293_551878_INTRON_25_346 intron 22.63174 109.247601 22.63174 87.615861 55.1238005 1.741339152 -0.10546 96 14 SH18639 18639 YNL096C_14_444312_443395_INTRON_145_489 3' exon 24.120612 122.530906 24.120612 99.410294 61.765453 1.790745631 -0.105474 74 74 SH20625 20625 YHR101C spliced 23.981461 98.295226 61.1383435 1.786313668 -0.105533 87 3 SH21678 21678 copy of SH9841 22.722538 88.334375 55.5284565 1.744515602 -0.105541 18 4 SH9773 9773 RUF4 RUF4 641 658 27.647804 113.330109 70.4889565 1.848121081 -0.105608 102 53 SH10050 10050 RUF6 RUF6 96 112 54.256788 154.906089 104.5814385 2.019454611 -0.105654 174 41 SH16397 16397 YER056C-A_5_270183_269421_INTRON_38_434 5' exon 56.662772 214.212569 56.662772 158.549797 107.6062845 2.031837636 -0.105662 102 61 SH13238 13238 MT COX1 COX1-ai4 22.116646 104.772989 22.116646 83.656343 52.8864945 1.723344781 -0.105679 39 94 SH8364 8364 snoRNA cluster4 3' 31.561889 150.45436 31.561889 119.892471 75.72718 1.879251784 -0.105692 214 59 SH21806 21806 copy of SH15281 28.541298 115.220782 71.88104 1.856614352 -0.105724 57 3 SH5327 5327 snR30 snR30 486 502 36.508696 127.538565 82.0236305 1.913938988 -0.105728 130 75 SH15610 15610 YBR119W_2_479296_480281_INTRON_9_97 3' exon 33.49092 155.353347 33.49092 122.862427 78.1766735 1.893077187 -0.105734 51 24 SH14362 14362 MT ORF9 and ORF10 (hypothetical) ORF9 22.818972 110.931237 22.818972 89.112265 55.9656185 1.747921308 -0.105751 118 61 SH13588 13588 MT COX1 3' 23.499288 116.979189 23.499288 94.479901 58.9895945 1.770775411 -0.105752 104 66 SH19367 19367 YPR028W_16_623522_624197_INTRON_52_184 intron 32.240893 152.193531 32.240893 120.952638 76.5967655 1.884210431 -0.105756 88 7 SH3516 3516 Tyr1 3' flank 23.872612 97.446388 60.6595 1.782898826 -0.105771 213 43 SH14424 14424 MT 21S rRNA 21S rRNA3 153.937429 461.844899 153.937429 308.90747 231.4224495 2.364405486 -0.105787 115 23 SH15299 15299 MT 9S rRNA 3' 20.721422 93.63044 20.721422 73.909018 47.31522 1.675000864 -0.105788 121 56 SH3075 3075 Ser3 tRNA 71 83 34.47111 124.335497 79.4033035 1.899838571 -0.105795 136 34 SH13739 13739 MT COB Exon1 22.030887 104.071561 22.030887 83.040674 52.5357805 1.720455189 -0.105796 33 46 SH18091 18091 YLR367W_12_855877_857316_INTRON_698_1180 exon/intron 24.268533 123.916031 24.268533 100.647498 62.4580155 1.795588181 -0.105848 62 11 SH7270 7270 snR65 3' 22.855162 89.408313 56.1317375 1.749208486 -0.105863 186 38 SH12378 12378 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.523494 142.724832 28.523494 115.201338 71.862416 1.856501814 -0.105884 15 83 SH10187 10187 RUF6 RUF6 781 800 26.129546 109.994531 68.0620385 1.832904952 -0.10589 113 42 SH17770 17770 YKL180W_11_109271_110131_INTRON_310_615 intron 22.714138 110.015211 22.714138 88.301073 55.5076055 1.744352493 -0.105894 122 46 SH19869 19869 Negative Control 31.040304 119.115343 75.0778235 1.875511674 -0.105897 86 73 SH21829 21829 copy of SH16329 24.501483 102.031616 63.2665495 1.801174149 -0.105901 111 38 SH10548 10548 RUF8 RUF8 666 687 21.078811 76.325845 48.702328 1.687549721 -0.105905 161 27 SH16919 16919 YGL251C_7_31636_27921_INTRON_59_210 intron 26.933523 137.715406 26.933523 111.781883 69.357703 1.841094702 -0.105907 24 59 SH12183 12183 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7801 7817 30.217239 117.859884 74.0385615 1.869457972 -0.10594 131 101 SH2775 2775 Pro6 5' flank 25.635593 108.040431 66.838012 1.825023524 -0.105943 186 28 SH14336 14336 MT VAR1 includes 5’ processing site VAR1 24.029431 121.755424 24.029431 98.725993 61.377712 1.788010695 -0.105977 9 47 SH20994 20994 YML073C spliced 30.058324 117.617745 73.8380345 1.868280128 -0.105995 101 81 SH10477 10477 RUF8 RUF8 311 330 20.347324 71.449062 45.898193 1.661795588 -0.106011 43 35 SH3456 3456 Trp1 3' flank 23.154824 91.807678 57.481251 1.759526211 -0.106042 53 32 SH5449 5449 snR32 5' 24.221962 100.289793 62.2558775 1.794180359 -0.106048 104 25 SH6490 6490 snR46 5' 23.161078 91.860982 57.51103 1.759751146 -0.106076 10 15 SH631 631 Gln2 5' flank 23.281193 92.808656 58.0449245 1.763764251 -0.106171 175 64 SH9975 9975 RUF5-1 RUF5-1 681 700 24.088692 99.223684 61.656188 1.78997667 -0.106172 62 83 SH4257 4257 telomerase RNA telomerase 321 338 25.740197 108.618569 67.179383 1.827236011 -0.106185 64 49 SH5910 5910 snR36 snR36 6 27 25.104902 105.241664 65.173283 1.814069598 -0.106189 124 48 SH12069 12069 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7231 7249 23.915752 97.834573 60.8751625 1.784440134 -0.106197 41 98 SH15957 15957 YDL130W_4_229906_230527_INTRON_115_415 intron 26.974521 137.864834 26.974521 111.890313 69.432417 1.841562284 -0.10621 14 20 SH34 34 Ala1 tRNA + 3' flank 66 3' flank 23.220756 92.341637 57.7811965 1.761786531 -0.106221 125 92 SH683 683 Gln3 5' flank 23.216717 92.311936 57.7643265 1.761659714 -0.106239 146 36 SH21554 21554 copy of SH4780 130.459854 273.19537 201.827612 2.304980582 -0.10624 152 13 SH21311 21311 YPL241C spliced 26.855587 111.630997 69.243292 1.840377707 -0.106264 89 81 SH9437 9437 RUF2 RUF2 26 44 22.363999 85.608325 53.986162 1.732282454 -0.106267 105 65 SH8463 8463 snoRNA cluster 5 snR128/3' 24.694461 126.774738 24.694461 103.080277 63.887369 1.805415003 -0.106295 10 9 SH9719 9719 RUF4 RUF4 371 387 22.891099 89.737403 56.314251 1.750618312 -0.106343 6 80 SH6586 6586 snR47 snR47 36 55 25.317839 106.386089 65.851964 1.818568732 -0.106368 58 14 SH19599 19599 AEP2/ATP13 2.1 25.045963 104.945553 64.995758 1.812885013 -0.106384 88 92 SH11837 11837 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6071 6088 35.148565 125.411105 80.279835 1.904606471 -0.106386 168 45 SH844 844 Glu2 5' flank - tRNA4 4 26.581909 111.033479 68.807694 1.837637003 -0.106411 66 93 SH14853 14853 MT tRNA Ser2; tRNA Arg2 5' 21.966191 103.595055 21.966191 82.628864 52.2975275 1.718481157 -0.10644 22 52 SH19327 19327 YPL218W_16_138697_139408_INTRON_29_167 intron 22.608013 109.128727 22.608013 87.520714 55.0643635 1.740870623 -0.106446 191 101 SH3712 3712 Val3 tRNA 41 53 70.837062 180.59651 125.716786 2.09939327 -0.106488 63 57 SH3000 3000 Ser2 5' flank 22.59487 87.423523 55.0091965 1.740435301 -0.106506 167 11 SH19064 19064 YOR293W_15_867094_867848_INTRON_53_489 exon/intron 22.399981 107.309721 22.399981 85.90974 54.1548605 1.733637441 -0.106524 119 79 SH10538 10538 RUF8 RUF8 616 633 24.25949 100.646502 62.452996 1.795553277 -0.106551 189 17 SH7355 7355 snR68 5' - 13 -4 13 30.139372 117.774966 73.957169 1.868980278 -0.106557 45 75 SH17962 17962 YLR185W_12_522665_523290_INTRON_8_366 intron 24.10846 122.531602 24.10846 99.423142 61.765801 1.790748078 -0.106563 170 48 SH15357 15357 YBL026W_2_170585_171000_INTRON_55_182 intron 22.502398 108.210498 22.502398 86.7081 54.605249 1.737234392 -0.106564 102 19 SH11181 11181 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2791 2806 23.478443 94.394595 58.936519 1.770384481 -0.106567 84 4 SH9825 9825 RUF5-1 5' 23.559752 95.037701 59.2987265 1.773045367 -0.10658 42 27 SH14689 14689 MT 21S rRNA 3' 23.494774 117.023362 23.494774 94.528588 59.011681 1.770937986 -0.106621 152 90 SH8253 8253 snoRNA cluster4 5' 30.993912 149.0829 30.993912 119.088988 75.04145 1.875301217 -0.106661 115 30 SH21093 21093 YNL012W spliced 24.537077 102.281114 63.4090955 1.802151558 -0.106675 118 23 SH8118 8118 snoRNA cluster 3; 5'/snR41 26.160731 135.273896 26.160731 110.113165 68.136948 1.833382677 -0.106726 211 49 SH17406 17406 YIL069C_9_232366_231550_INTRON_4_412 3' exon 26.381649 135.990266 26.381649 110.608617 68.495133 1.835659713 -0.106762 18 29 SH1660 1660 Leu5 3' flank 24.28865 100.907297 62.5979735 1.796560274 -0.106778 29 14 SH20527 20527 YGR118W spliced 28.063985 114.307428 71.1857065 1.8523928 -0.106821 90 46 SH8917 8917 LSR1 / U2 RNA 3' 153.538327 308.508142 231.0232345 2.36365566 -0.106884 97 24 SH6915 6915 snR58 5' 24.123787 99.587633 61.85571 1.791379796 -0.10696 54 56 SH15727 15727 YBR230C_2_680008_679507_INTRON_12_108 5' exon 27.229597 138.727632 27.229597 112.498035 69.863816 1.844252303 -0.106989 140 69 SH6413 6413 snR45 5' 23.98715 98.490971 61.2390605 1.787028519 -0.107019 6 32 SH21217 21217 YOR122C spliced 32.411583 121.292962 76.8522725 1.885656714 -0.107051 182 97 SH9375 9375 RUF1 RUF1 451 467 28.790344 115.691324 72.240834 1.858782751 -0.107054 72 53 SH5565 5565 snR33 snR33 111 127 23.453137 94.243868 58.8485025 1.769735416 -0.10707 37 23 SH4990 4990 snR10 5' - 2 -19 2 22.920667 90.041073 56.48087 1.751901378 -0.107082 4 65 SH12635 12635 MT_15S MT_15S 21.965373 103.644487 21.965373 82.679114 52.3222435 1.718686358 -0.107113 76 9 SH7754 7754 snoRNA cluster1 snR76 34.900939 158.958825 34.900939 125.057886 79.9794125 1.90297821 -0.107129 165 83 SH18756 18756 YNL162W_14_331319_332151_INTRON_5_516 intron 22.543046 108.619955 22.543046 87.076909 54.8099775 1.738859624 -0.107139 73 46 SH8857 8857 LSR1 / U2 RNA U2 926 941 229.535202 424.132379 326.8337905 2.514326951 -0.107153 198 95 SH19395 19395 YPR043W_16_654161_654842_INTRON_3_405 3' exon 27.204805 138.659282 27.204805 112.454477 69.829641 1.844039809 -0.107172 70 53 SH12990 12990 MT COX1 COX1ai2 25.311347 130.730939 25.311347 106.419592 65.8654695 1.818657792 -0.107182 37 13 SH10334 10334 RUF7 RUF7 281 298 94.604775 217.912028 156.2584015 2.193843377 -0.107194 211 43 SH13227 13227 MT COX1 COX1-ai4 24.506931 125.671872 24.506931 102.164941 63.335936 1.801650193 -0.107207 42 50 SH20971 20971 YML034W spliced 28.608961 115.413755 72.011358 1.857401001 -0.10725 18 99 SH50 50 Ala1 3' flank 23.862049 97.512366 60.6872075 1.783097154 -0.107276 89 62 SH11930 11930 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6536 6551 54.480903 155.384385 104.932644 2.020910616 -0.107327 86 40 SH18680 18680 YNL112W_14_413636_416278_INTRON_1274_2275 intron 23.842362 120.202231 23.842362 97.359869 60.6011155 1.782480618 -0.107328 60 13 SH4335 4335 telomerase RNA telomerase 711 732 22.915519 90.027073 56.471296 1.751827755 -0.107367 64 68 SH15254 15254 MT tRNA fMet 3' 23.318559 115.533876 23.318559 93.215317 58.266938 1.765422196 -0.107369 114 91 SH14162 14162 MT COB intronic 23.294958 115.327447 23.294958 93.032489 58.1637235 1.764652201 -0.10739 20 26 SH11083 11083 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2301 2319 20503.21847 21892.0282 21197.62333 4.326287171 -0.10741 131 93 SH10779 10779 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 781 801 24.060147 99.120739 61.590443 1.789513328 -0.107426 148 30 SH32 32 Ala1 tRNA 56 68 25.609503 108.032735 66.821119 1.824913744 -0.107493 141 41 SH18709 18709 YNL130C_14_381156_379555_INTRON_30_470 intron 26.318695 135.829868 26.318695 110.511173 68.414934 1.835150912 -0.107494 175 15 SH17980 17980 YLR211C_12_564531_563792_INTRON_19_77 3' exon 34.852588 158.858355 34.852588 125.005767 79.9291775 1.902705344 -0.107512 163 27 SH17219 17219 YHR041C_8_189855_189122_INTRON_15_115 intron 24.72608 127.072642 24.72608 103.346562 64.036321 1.806426373 -0.107522 96 59 SH15495 15495 YBL092W_2_45639_46364_INTRON_1_333 intron 27.313369 139.027711 27.313369 112.714342 70.0138555 1.845183994 -0.107532 68 20 SH15849 15849 YDL075W_4_322225_322987_INTRON_58_478 intron 24.491419 125.60212 24.491419 102.110701 63.30106 1.801410983 -0.10755 93 100 SH14803 14803 "MT tRNAs (Lys, Arg1, Gly)" intergenic 23.871896 120.490643 23.871896 97.618747 60.7453215 1.783512835 -0.107551 76 60 SH15973 15973 YDL136W_4_217600_218367_INTRON_4_408 exon/intron 47.058815 190.06272 47.058815 144.003905 95.53136 1.98014596 -0.107561 179 52 SH6238 6238 snR42 5' 22.730342 88.585106 55.657724 1.745525443 -0.107588 187 41 SH16254 16254 YDR397C_4_1266887_1266355_INTRON_38_129 intron 26.199559 135.450971 26.199559 110.251412 68.2254855 1.833946635 -0.107605 49 20 SH3250 3250 Thr1 3' flank 24.926894 104.417587 64.6722405 1.810717907 -0.107632 148 100 SH1129 1129 Gly4 3' flank 24.517497 102.254814 63.3861555 1.801994412 -0.107633 35 17 SH6497 6497 snR46 5' 24.046439 99.031596 61.5390175 1.789150558 -0.107638 28 45 SH4588 4588 U3b (snR17b) 3' 22.76824 88.889569 55.8289045 1.746859106 -0.107653 142 87 SH2213 2213 Phe1 5' flank 23.90732 97.914578 60.910949 1.784695366 -0.107667 168 80 SH13914 13914 MT COB Cytbi3 22.526799 108.525874 22.526799 86.999075 54.762937 1.738486732 -0.107675 105 76 SH6767 6767 snR50 snR50 11 28 362.104103 625.732112 493.9181075 2.693654948 -0.107689 159 65 SH9536 9536 RUF3 RUF3 66 86 22.449213 86.396492 54.4228525 1.735781301 -0.107689 178 23 SH4060 4060 SRP RNA SRP RNA 191 208 49.886091 148.378937 99.132514 1.99621612 -0.107701 98 82 SH2834 2834 Pro7 5' flank 24.386497 101.57059 62.9785435 1.799192613 -0.107706 187 95 SH19491 19491 YPT1 26.382043 110.665323 68.523683 1.835840697 -0.107713 16 37 SH13104 13104 MT COX1 COX1ai3 25.026281 128.977211 25.026281 104.95093 64.9886055 1.812837218 -0.107716 54 28 SH14662 14662 MT 21S rRNA 21S rRNA4 22.220793 105.856397 22.220793 84.635604 53.4281985 1.727770531 -0.107739 95 78 SH10466 10466 RUF8 RUF8 256 278 22.796273 89.119556 55.9579145 1.74786152 -0.107749 198 84 SH16544 16544 YER133W_5_432491_433954_INTRON_178_702 exon/intron 24.288528 124.296981 24.288528 101.008453 62.6484905 1.796910611 -0.107764 72 71 SH13221 13221 MT COX1 COX1-ai4 22.046984 104.369957 22.046984 83.322973 52.6849785 1.721686807 -0.107777 96 11 SH8512 8512 snR19 / U1 RNA U1 56 77 22.320035 85.404606 53.8623205 1.73128506 -0.107786 111 41 SH7606 7606 snR189 snR189 101 118 21.244266 77.623478 49.433872 1.694024629 -0.107804 158 15 SH9385 9385 RUF1 RUF1 501 517 61.383535 166.002884 113.6932095 2.055734527 -0.107816 183 95 SH12206 12206 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7916 7936 34.945542 125.174274 80.059908 1.903415087 -0.107831 89 10 SH4580 4580 U3b (snR17b) 456-462 + 3' 456 25.851193 109.352517 67.601855 1.829958613 -0.107837 88 67 SH10258 10258 RUF7 5' 29.323991 116.578185 72.951088 1.863031773 -0.107842 98 53 SH19757 19757 Negative Control 23.963031 98.380308 61.1716695 1.786550333 -0.107845 141 38 SH18805 18805 YNL301C_14_64561_63569_INTRON_113_544 intron 24.541199 125.939093 24.541199 102.397894 63.4695465 1.802565395 -0.107859 51 47 SH16878 16878 YGL187C_7_150529_149708_INTRON_1_342 3' exon 22.479462 108.128261 22.479462 86.648799 54.5641305 1.736907239 -0.107878 157 23 SH3629 3629 Val1 3' flank 30.759001 118.803008 74.7810045 1.873791295 -0.107905 187 31 SH6567 6567 snR47 5' 49.969175 148.52213 99.2456525 1.996711491 -0.107917 141 88 SH10550 10550 RUF8 RUF8 676 695 21.589001 80.060576 50.8247885 1.70607558 -0.107953 159 32 SH13452 13452 MT COX1 intronic 22.667267 109.790452 22.667267 88.123185 55.395226 1.743472339 -0.107953 188 64 SH14834 14834 MT tRNA Asp 5' 22.215955 105.833738 22.215955 84.617783 53.416869 1.727678429 -0.107958 19 50 SH12587 12587 MT_15S MT_15S 24.964115 128.606928 24.964115 104.642813 64.803464 1.811598221 -0.107975 159 86 SH16326 16326 YDR471W_4_1401759_1402553_INTRON_32_415 intron 23.099555 113.656847 23.099555 91.557292 57.3284235 1.758369999 -0.108043 143 61 SH16090 16090 YDR025W_4_491510_492319_INTRON_46_384 intron 22.753418 110.563726 22.753418 88.810308 55.781863 1.746493015 -0.108057 30 80 SH4917 4917 snR9 5' - 7 7 30.045914 117.717746 73.88183 1.868537644 -0.10809 44 34 SH1490 1490 Leu3 5' flank 25.278764 106.323167 65.8009655 1.818232266 -0.108102 174 25 SH9418 9418 RUF2 5' 24.463438 102.007747 63.2355925 1.800961592 -0.108106 185 76 SH18907 18907 YOL120C_15_94401_93394_INTRON_113_559 intron 21.723289 101.751042 21.723289 81.027753 51.375521 1.710756239 -0.108109 183 12 SH9935 9935 RUF5-1 RUF5-1 481 499 23.633259 95.773092 59.7031755 1.775997431 -0.108142 166 15 SH8393 8393 snoRNA cluster 5 snR190 24.012487 121.826523 24.012487 98.814036 61.4132615 1.788262162 -0.108194 22 13 SH6769 6769 snR50 snR50 21 37 29.560604 116.969017 73.2648105 1.864895431 -0.108198 19 99 SH8202 8202 snoRNA cluster 3; intergenic 62.564247 229.443807 62.564247 167.87956 115.2219035 2.061535046 -0.108219 157 28 SH7614 7614 snR189 snR189 141 162 22.986469 90.671486 56.8289775 1.754569842 -0.108219 89 74 SH3458 3458 Trp1 3' flank 61.334012 165.96447 113.649241 2.05556654 -0.108223 214 28 SH21614 21614 copy of SH7315 22.53301 87.097922 54.815466 1.738903111 -0.108229 203 104 SH454 454 Asp1 3' flank 25.771278 108.965491 67.3683845 1.828456133 -0.108306 124 15 SH21123 21123 YNL112W spliced 24.930766 104.49419 64.712478 1.81098803 -0.108317 183 100 SH16488 16488 YER102W_5_362729_363698_INTRON_1_360 intron/exon 31.835269 151.311982 31.835269 120.476713 76.155991 1.881704074 -0.108362 115 76 SH17133 17133 YHR010W_8_126513_127484_INTRON_32_592 intron 29.776001 146.091187 29.776001 117.315186 73.5455935 1.866556657 -0.108378 148 44 SH3805 3805 RNaseP 5' - 3 3 41.416756 135.363608 88.390182 1.946404028 -0.108381 54 22 SH20375 20375 YER179W spliced 24.726913 103.42115 64.0740315 1.80668205 -0.108387 72 49 SH3471 3471 Trp1 3' flank 23.581597 95.388002 59.4847995 1.774406002 -0.108396 24 13 SH4798 4798 snR5 snR5 161 180 24.968898 104.707931 64.8384145 1.811832386 -0.108459 114 79 SH13951 13951 MT COB Cytbi3 21.221709 97.739909 21.221709 77.5182 49.3699545 1.693462727 -0.108471 183 36 SH2040 2040 Lys3 3' flank 26.174224 110.247297 68.2107605 1.833852892 -0.108503 85 95 SH6083 6083 snR37 snR37 331 350 23.710612 96.424893 60.0677525 1.778641383 -0.108509 194 52 SH3536 3536 Tyr2 5' flank 23.990515 98.669471 61.329993 1.787672915 -0.108516 83 35 SH15452 15452 YBL087C_2_60732_59815_INTRON_43_546 intron 24.016325 121.897859 24.016325 98.881534 61.4489295 1.788514321 -0.108554 132 15 SH12120 12120 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7486 7506 24.017831 98.89395 61.4558905 1.788563516 -0.108557 182 75 SH504 504 Asp2 3' flank 23.769939 96.908316 60.3391275 1.780599026 -0.108609 165 77 SH6783 6783 snR50 3' 24.558784 102.552919 63.5558515 1.803155542 -0.108633 142 60 SH7281 7281 snR65 3' 43.580241 138.733984 91.1571125 1.95979056 -0.108651 97 100 SH13835 13835 MT COB Cytbi2 39.1415 169.98801 39.1415 131.84651 85.494005 1.931935662 -0.108653 4 46 SH9415 9415 RUF2 5' 24.147391 99.95504 62.0512155 1.792750293 -0.10868 45 48 SH8757 8757 LSR1 / U2 RNA U2 426 443 49.604437 148.027198 98.8158175 1.994826468 -0.108701 211 19 SH15085 15085 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.232902 114.905585 23.232902 92.672683 57.9527925 1.763074368 -0.10871 130 39 SH20595 20595 YHR039C-A spliced 34.888166 125.13751 80.012838 1.903159675 -0.108723 43 31 SH10922 10922 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1496 1515 1292.560148 1925.055025 1608.807587 3.206504106 -0.108728 180 2 SH21810 21810 copy of SH15490 28.399388 115.150757 71.7750725 1.85597364 -0.108771 36 101 SH20990 20990 YML073C spliced 28.188914 114.696944 71.442929 1.853959251 -0.108782 184 91 SH10447 10447 RUF8 RUF8 161 178 24.58478 102.706257 63.6455185 1.803767829 -0.108833 68 62 SH7174 7174 snR64 5' 22.410698 86.200853 54.3057755 1.73484602 -0.108835 38 60 SH16312 16312 YDR471W_4_1401759_1402553_INTRON_32_415 5' exon 31.792792 151.231894 31.792792 120.439102 76.115947 1.881475655 -0.108848 201 63 SH5261 5261 snR30 snR30 156 170 26.27882 110.501488 68.390154 1.834993582 -0.108848 139 7 SH13524 13524 MT COX1 intronic 25.715975 133.432511 25.715975 108.716536 67.2162555 1.827474315 -0.108851 146 11 SH4765 4765 snR5 5' - 15 15 33.173579 122.569437 77.871508 1.891378585 -0.108873 161 3 SH11272 11272 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2 3246 3264 22.59875 87.673145 55.1359475 1.741434842 -0.1089 140 61 SH2463 2463 Phe5 86-91 + 3' flank 86 22.51478 87.020011 54.7673955 1.738522088 -0.108935 212 34 SH8267 8267 snoRNA cluster4 snR67 32.281075 152.484649 32.281075 121.203574 76.7423245 1.88503495 -0.108942 189 74 SH9199 9199 snR7 U5 RNA 3' 23.437875 94.305526 58.8717005 1.769906581 -0.108951 71 83 SH956 956 Gly1 tRNA 31 45 35.81044 126.637732 81.224086 1.909684833 -0.10898 75 47 SH6189 6189 snR40 snR40 6 22 624.082667 1007.094247 815.588457 2.911471071 -0.108991 58 48 SH17798 17798 YKL186C_11_93537_92746_INTRON_71_233 3' exon 25.388223 131.371808 25.388223 106.983585 66.185904 1.820765505 -0.109034 31 60 SH10678 10678 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 276 289 68.861858 177.751955 123.3069065 2.090987402 -0.109049 108 99 SH19272 19272 YPL143W_16_282121_282969_INTRON_20_544 intron 24.254121 124.119497 24.254121 100.865376 62.5597485 1.796294994 -0.109091 7 5 SH6622 6622 snR48 5' 22.587882 87.607158 55.09752 1.741132051 -0.109108 98 43 SH17691 17691 YKL006W_11_431544_432358_INTRON_130_527 intron 24.010166 121.899696 24.010166 98.88953 61.449848 1.788520813 -0.109123 44 44 SH7518 7518 snR79 5' 22.679955 88.331952 55.5059535 1.744339568 -0.109135 162 41 SH19163 19163 YPL075W_16_412249_415357_INTRON_9_759 intron 26.387033 136.147082 26.387033 110.760049 68.573541 1.836156576 -0.109135 130 11 SH8394 8394 snoRNA cluster 5 snR190 33.534892 155.668609 33.534892 123.133717 78.3343045 1.893951992 -0.109136 8 51 SH14547 14547 MT 21S rRNA 21S rRNA3 25.713797 133.446353 25.713797 108.732556 67.2231765 1.82751903 -0.109175 160 10 SH4758 4758 snR5 5' 22.812508 89.382254 56.097381 1.748942586 -0.109189 126 84 SH13184 13184 MT COX1 Exon4 27.772376 140.592039 27.772376 113.819663 70.7960195 1.85000884 -0.109226 90 61 SH8812 8812 LSR1 / U2 RNA U2 701 713 6426.300056 7905.37855 7165.839303 3.855267065 -0.109231 46 44 SH12591 12591 MT_15S MT_15S 22.726865 110.44216 22.726865 88.715295 55.72108 1.746019525 -0.109287 52 19 SH20536 20536 YGR183C spliced 26.99842 112.127226 69.562823 1.842377198 -0.109308 49 38 SH21358 21358 YPR187W spliced 26.732829 111.539586 69.1362075 1.839705552 -0.109309 168 67 SH18332 18332 YML094W_13_82275_82849_INTRON_17_99 3' exon 26.118429 135.290226 26.118429 110.171797 68.145113 1.833434716 -0.10935 56 84 SH11000 11000 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1886 1902 8290.147972 9886.923535 9088.535754 3.95849392 -0.109364 54 31 SH15777 15777 YDL012C_4_431513_431104_INTRON_46_131 intron 24.11076 122.83882 24.11076 99.72806 61.91941 1.79182681 -0.109365 108 5 SH16802 16802 YGL137W_7_249872_252741_INTRON_19_218 intron 24.432114 125.375493 24.432114 101.943379 63.1877465 1.800632867 -0.109365 94 35 SH10698 10698 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 376 394 24.29018 101.188305 62.7392425 1.797539271 -0.109368 47 79 SH12052 12052 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7146 7159 23.707616 96.486985 60.0973005 1.778854964 -0.109378 155 27 SH19482 19482 ADH1 22.978005 90.71773 56.8478675 1.754714178 -0.109417 70 29 SH13404 13404 MT COX1 intronic 28.41238 142.631941 28.41238 115.219561 71.8159705 1.856221034 -0.109438 161 33 SH20154 20154 YDL125C spliced 23.487181 94.745094 59.1161375 1.771706051 -0.109469 22 80 SH2781 2781 Pro6 5' flank - tRNA10 10 1079.747489 1638.919381 1359.333435 3.133325999 -0.109487 62 103 SH1312 1312 Ile3 5' flank 22.384609 86.057679 54.221144 1.734168676 -0.109494 60 53 SH10593 10593 RUF8 RUF8 891 905 24.793452 103.863309 64.3283805 1.808402618 -0.109496 105 45 SH12549 12549 MT_ORF6 + ORF7 (hypothetical) 3' 21.185451 97.533625 21.185451 77.348174 49.2668125 1.692554465 -0.109534 12 18 SH3220 3220 Thr1 5' flank 23.413421 94.16992 58.7916705 1.7693158 -0.109543 208 20 SH11607 11607 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4921 4936 41799.02751 41028.02446 41413.52598 4.617142208 -0.109548 157 7 SH3771 3771 Val4 3' flank 22.894119 90.063389 56.478754 1.751885107 -0.109555 34 87 SH7169 7169 snR64 5' 25.313765 106.632594 65.9731795 1.819367415 -0.109577 120 44 SH20535 20535 YGR148C spliced 49.236762 147.533349 98.3850555 1.992929135 -0.109589 189 40 SH14118 14118 MT COB intronic 24.072198 122.510728 24.072198 99.43853 61.755364 1.790674686 -0.109589 213 46 SH11450 11450 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4136 4153 30.098301 117.886755 73.992528 1.869187866 -0.109634 26 40 SH5979 5979 snR36 351-355 + 3' 351 368 23.153444 92.146734 57.650089 1.760799982 -0.109708 149 63 SH18223 18223 YML026C_13_223828_222987_INTRON_48_448 intron 43.844758 182.067473 43.844758 139.222715 91.5337365 1.961581191 -0.109713 177 21 SH8026 8026 snoRNA cluster 2 snR55 28.751267 143.529648 28.751267 115.778381 72.264824 1.858926949 -0.10972 169 102 SH16419 16419 YER056C-A_5_270183_269421_INTRON_38_434 intron/exon 27.365219 139.324628 27.365219 112.959409 70.162314 1.846103904 -0.109724 166 44 SH13453 13453 MT COX1 intronic 24.439469 125.455138 24.439469 102.015669 63.227569 1.800906484 -0.109784 90 59 SH8483 8483 snR19 / U1 RNA 5' 30.225623 118.092648 74.1591355 1.870164658 -0.109794 33 65 SH8959 8959 snR17a / U3a U3a 81 97 23.230369 92.756347 57.993358 1.763378257 -0.109798 23 61 SH5041 5041 snR10 236-245 + 3' 236 24.118818 99.841982 61.9804 1.792254375 -0.109839 70 48 SH19333 19333 YPL218W_16_138697_139408_INTRON_29_167 3' exon 27.459106 139.63281 27.459106 113.173704 70.316405 1.847056659 -0.109864 2 33 SH18746 18746 YNL162W_14_331319_332151_INTRON_5_516 intron 30.052567 146.882685 30.052567 117.830118 73.9413425 1.868887331 -0.109882 136 8 SH7041 7041 snR62 5' - 18 -4 18 21.846362 82.055351 51.9508565 1.715592712 -0.109898 9 21 SH3174 3174 Ser5 5' flank - tRNA8 8 25.823014 109.380503 67.6017585 1.829957993 -0.10992 181 39 SH3977 3977 RNase MRP RNaseMRP 301 316 30.149666 117.982982 74.066324 1.869620791 -0.109928 144 77 SH15308 15308 YAL001C_1_151163_147591_INTRON_71_160 intron/exon 24.966027 128.780658 24.966027 104.814631 64.890329 1.812179976 -0.109943 201 40 SH6051 6051 snR37 snR37 171 190 26.774838 111.672348 69.223593 1.840254137 -0.109978 214 19 SH16486 16486 YER102W_5_362729_363698_INTRON_1_360 intron 23.029917 113.216995 23.029917 91.187078 57.1084975 1.756700734 -0.109996 56 72 SH9031 9031 snR17a / U3a U3a 441 456 5495.722739 6895.153127 6195.437933 3.79207201 -0.110023 204 7 SH4035 4035 SRP RNA SRP RNA 66 82 28.43742 115.294624 71.866022 1.856523606 -0.110028 160 20 SH12417 12417 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.135901 123.140372 24.135901 100.004471 62.070186 1.792883047 -0.110072 70 60 SH1034 1034 Gly3 5' flank 22.743557 88.92764 55.8355985 1.746911176 -0.110156 116 79 SH673 673 Gln2 3' flank 33.262801 122.784549 78.023675 1.892226402 -0.110194 36 48 SH9239 9239 snR6 / U6 RNA U6 66 78 28.257278 114.931764 71.594521 1.854879788 -0.110209 156 14 SH20641 20641 YHR203C spliced 656.134651 1053.332258 854.7334545 2.931830703 -0.110227 163 92 SH7637 7637 snR189 3' 26.304582 110.640044 68.472313 1.835514999 -0.110227 81 60 SH16227 16227 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 24.193853 123.685986 24.193853 100.492133 62.342993 1.794787648 -0.110231 65 22 SH18192 18192 YML024W_13_225889_226697_INTRON_4_401 intron 23.470701 117.161415 23.470701 94.690714 59.0807075 1.771445687 -0.110251 63 71 SH13665 13665 MT ATP6 ATP6 23.119291 114.047037 23.119291 91.927746 57.5235185 1.759845442 -0.110255 27 48 SH9128 9128 snR7 U5 RNA 5' 24.945311 104.73074 64.8380255 1.811829781 -0.110259 143 24 SH8282 8282 snoRNA cluster4 intergenic 25.409609 131.614852 25.409609 107.205243 66.307426 1.821562169 -0.110316 54 41 SH18784 18784 YNL301C_14_64561_63569_INTRON_113_544 5' exon 25.959682 134.831564 25.959682 109.871882 67.915782 1.831970706 -0.11032 129 71 SH3016 3016 Ser2 tRNA 41 55 21.641804 80.627847 51.1348255 1.708716778 -0.110323 200 84 SH2251 2251 Phe1 3' flank 24.386829 101.781927 63.084378 1.799921825 -0.110334 127 11 SH5445 5445 snR31 3' 23.247012 92.938562 58.092787 1.764122212 -0.110342 102 26 SH14990 14990 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 23.42611 116.773943 23.42611 94.347833 58.8869715 1.77001922 -0.110348 142 41 SH813 813 Glu1 3' flank 22.358265 85.932047 54.145156 1.733559609 -0.110369 214 90 SH219 219 Arg3 5' flank 41.13988 135.077561 88.1087205 1.945018895 -0.110397 140 35 SH12872 12872 MT COX1 COX1ai1 26.786243 137.509849 26.786243 111.723606 69.2549245 1.84045066 -0.110416 188 79 SH17215 17215 YHR039C-A_8_187670_187164_INTRON_4_165 3' exon 159.598064 477.056376 159.598064 318.458312 239.028188 2.378449119 -0.11042 140 98 SH13343 13343 MT COX1 COX1-ai5a 22.752955 110.784283 22.752955 89.031328 55.8921415 1.74735075 -0.110472 25 80 SH13535 13535 MT COX1 intronic 22.952937 112.57153 22.952937 90.618593 56.785765 1.754239481 -0.110478 211 18 SH12039 12039 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7081 7098 23.389244 94.070203 58.7297235 1.768857956 -0.110485 58 29 SH4896 4896 snR8 3' 25.490817 107.655161 66.572989 1.823298056 -0.110513 115 9 SH19814 19814 Negative Control 25.153435 105.858921 65.506178 1.816282261 -0.110531 205 52 SH12001 12001 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6891 6908 28.593429 115.573168 72.0832985 1.857834652 -0.110548 151 21 SH2027 2027 Lys3 tRNA 81 93 38.824279 131.472498 85.1483885 1.930176433 -0.11056 4 45 SH1016 1016 Gly2 71-72 + 3' flank 71 88 24.157602 100.236974 62.197288 1.793771448 -0.110618 141 50 SH13619 13619 MT ATP6 5' / ATP6 22.277868 106.610002 22.277868 85.332134 53.805001 1.730822644 -0.110624 137 86 SH6875 6875 snR56 snR56 6 28 194.318582 371.553901 282.9362415 2.45168858 -0.110647 38 26 SH5125 5125 snR11 snR11 226 245 23.320932 93.54824 58.434586 1.766669971 -0.11065 117 70 SH2608 2608 Pro3 5' flank - tRNA5 5 29.507631 117.024865 73.266248 1.864903952 -0.110651 183 70 SH16120 16120 YDR064W_4_579453_580447_INTRON_22_560 intron 25.802156 134.134276 25.802156 109.33212 67.567138 1.829735524 -0.110658 39 100 SH19234 19234 YPL090C_16_378390_377286_INTRON_7_400 intron 41.40552 175.909898 41.40552 135.504378 88.454949 1.946722136 -0.110673 209 44 SH12270 12270 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.761518 137.447485 26.761518 111.685967 69.2237425 1.840255075 -0.110706 98 85 SH1563 1563 Leu4 5' flank - tRNA3 3 22.343655 85.849053 54.096354 1.733167995 -0.110707 140 76 SH20937 20937 YLR406C spliced 30.68424 118.850943 74.7675915 1.873713391 -0.110728 170 102 SH20152 20152 YDL125C spliced 25.488919 107.66339 66.5761545 1.823318706 -0.110731 190 27 SH3688 3688 Val3 5' flank 24.12368 99.973261 62.0484705 1.792731081 -0.110735 69 78 SH15471 15471 YBL087C_2_60732_59815_INTRON_43_546 3' exon 29.877451 146.484777 29.877451 117.607326 73.7423885 1.8677172 -0.110743 60 27 SH23 23 Ala1 tRNA 11 23 52.452269 152.554246 102.5032575 2.010737667 -0.110752 175 90 SH13791 13791 MT COB intronic 22.057673 104.709386 22.057673 83.651713 52.854693 1.723083555 -0.110761 194 49 SH18431 18431 YMR142C_13_551206_550205_INTRON_5_406 intron 26.318904 136.02538 26.318904 110.706476 68.51269 1.835771019 -0.110813 126 55 SH12259 12259 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 76.110856 264.408644 76.110856 189.297788 132.704322 2.122885067 -0.110842 48 82 SH15870 15870 YDL079C_4_314747_312950_INTRON_413_704 intron 23.383724 116.447415 23.383724 94.063691 58.7237075 1.768813467 -0.110868 65 9 SH12965 12965 MT COX1 COX1ai2 22.283935 106.685133 22.283935 85.401198 53.8425665 1.731125753 -0.110871 193 61 SH6653 6653 snR48 snR48 91 110 23.511366 95.073657 59.2925115 1.772999846 -0.110877 42 66 SH15158 15158 MT tRNA Val 5' 23.23008 115.088651 23.23008 92.858571 58.0443255 1.763759769 -0.110895 34 58 SH15198 15198 MT COX3 cox3 22.893159 112.076177 22.893159 90.183018 56.5380885 1.752341121 -0.110905 47 14 SH19538 19538 CBP1 1.2 24.369012 101.736219 63.0526155 1.799703106 -0.110938 168 56 SH16845 16845 YGL178W_7_167356_170575_INTRON_4_643 intron/exon 24.471524 125.74991 24.471524 102.278386 63.374955 1.801917664 -0.11095 159 68 SH11577 11577 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4771 4787 36.7716 128.290446 82.531023 1.916617228 -0.110968 98 54 SH12999 12999 MT COX1 COX1ai2 23.84156 120.562624 23.84156 97.721064 60.781312 1.78377007 -0.111002 21 27 SH10522 10522 RUF8 RUF8 536 558 24.195599 100.586016 62.3908075 1.795120607 -0.111003 131 21 SH3393 3393 Thr4 tRNA 51 67 69.73545 179.328395 124.5319225 2.095280693 -0.111044 159 27 SH10401 10401 RUF8 5' 24.963399 104.891932 64.9276655 1.812429788 -0.111052 59 14 SH9253 9253 snR6 / U6 RNA 3' 22.881425 90.104632 56.4930285 1.751994857 -0.111063 51 28 SH13819 13819 MT COB Cytbi2 24.680798 127.075917 24.680798 103.395119 64.0379585 1.806437478 -0.111074 176 43 SH14728 14728 MT tRNA cys; tRNA his intergenic 22.97744 112.851211 22.97744 90.873771 56.9256055 1.755307659 -0.111108 213 45 SH21321 21321 YPR028W spliced 27.897649 114.206431 71.05204 1.851576552 -0.111109 142 77 SH12746 12746 MT COX1 COX1ai1 25.822783 134.304502 25.822783 109.481719 67.652251 1.830282251 -0.111113 39 96 SH2150 2150 Met1 3' flank 33.46187 123.145079 78.3034745 1.893781033 -0.11116 78 33 SH1426 1426 Leu2 5' flank 23.817538 97.544659 60.6810985 1.783053434 -0.111166 149 48 SH17070 17070 YGR214W_7_920570_921783_INTRON_91_545 3' exon 24.581436 126.460233 24.581436 102.878797 63.7301165 1.804344712 -0.111191 18 49 SH939 939 Gly1 5' flank 22.993077 91.006789 56.999933 1.755874345 -0.111193 174 30 SH15352 15352 YBL026W_2_170585_171000_INTRON_55_182 5' exon 24.980378 128.976124 24.980378 104.995746 64.988062 1.812833586 -0.111217 131 34 SH997 997 Gly2 5' flank 28.245208 114.968241 71.6067245 1.854953808 -0.111235 38 49 SH21781 21781 copy of SH14231 30.333058 118.340948 74.337003 1.871205048 -0.111239 172 19 SH18161 18161 YLR448W_12_1028848_1029762_INTRON_16_399 5' exon 72.081835 254.099929 72.081835 183.018094 127.5499645 2.105680342 -0.111247 185 102 SH18002 18002 YLR287C-A_12_713158_712537_INTRON_4_433 intron 24.324305 124.8495 24.324305 101.525195 62.92475 1.798821499 -0.11125 177 100 SH12972 12972 MT COX1 COX1ai2 22.341306 107.222559 22.341306 85.881253 54.1112795 1.733287803 -0.111268 158 33 SH9802 9802 RUF4 786-788 + 3' 786 26.804652 111.81524 69.309946 1.84079556 -0.111272 21 5 SH17328 17328 YIL004C_9_348502_347943_INTRON_12_142 intron/exon 2277.652897 5464.303879 2277.652897 3187.650982 2732.65194 3.436584319 -0.11131 137 4 SH3859 3859 RNaseP RNaseP 261 277 23.267635 93.194881 58.231258 1.765156172 -0.111332 48 20 SH12978 12978 MT COX1 COX1ai2 22.814584 111.414047 22.814584 89.599463 56.2070235 1.749790587 -0.111333 213 23 SH16714 16714 YGL031C_7_438393_437938_INTRON_1_456 intron 24.25575 124.367027 24.25575 101.111277 62.6835135 1.797153331 -0.111336 81 49 SH6967 6967 snR60 5' 27.510426 113.374865 70.4426455 1.847835658 -0.11134 89 76 SH2564 2564 Pro2 tRNA-intron/exon 56 71 104.257452 233.632373 168.9449125 2.227745118 -0.111416 50 54 SH20914 20914 YLR333C spliced 29.633615 117.267952 73.4507835 1.865996433 -0.111462 44 90 SH19286 19286 YPL143W_16_282121_282969_INTRON_20_544 3' exon 34.755286 158.860705 34.755286 125.105419 79.9303525 1.902711728 -0.111495 110 63 SH10119 10119 RUF6 RUF6 441 457 24.610304 103.056332 63.833318 1.805047419 -0.111498 16 101 SH15856 15856 YDL079C_4_314747_312950_INTRON_413_704 exon/intron 27.641944 140.315799 27.641944 113.673855 70.6578995 1.849160723 -0.111525 149 5 SH411 411 Asn1 3' flank 31.210227 119.698852 75.4545395 1.877685373 -0.111543 195 29 SH3809 3809 RNaseP RNaseP 11 28 24.232747 100.946903 62.589825 1.796503737 -0.111563 25 26 SH10628 10628 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 26 46 22.115744 84.172387 53.1440655 1.725454775 -0.111636 137 17 SH4577 4577 U3b (snR17b) U3b 441 457 68.092779 176.789809 122.441294 2.087927911 -0.111637 164 27 SH15233 15233 MT COX3 3' 22.601852 109.550763 22.601852 87.948911 55.2753815 1.742531749 -0.111637 151 9 SH5986 5986 snR36 3' 23.010565 91.189337 57.099951 1.756635736 -0.111642 155 53 SH3752 3752 Val4 5' flank - tRNA1 1 24.645109 103.253535 63.949322 1.805835944 -0.111658 73 74 SH18795 18795 YNL301C_14_64561_63569_INTRON_113_544 intron 22.1494 105.583972 22.1494 84.434572 53.291986 1.726661905 -0.111675 189 59 SH16049 16049 YDL191W_4_117665_118518_INTRON_4_494 intron 25.027469 129.312335 25.027469 105.284866 65.1561675 1.813955531 -0.111688 120 45 SH13290 13290 MT COX1 COX1-ai5a 27.205986 138.934353 27.205986 112.728367 69.9671765 1.844894348 -0.111711 14 31 SH571 571 Cys1 3' flank 24.806579 104.114516 64.4605475 1.80929399 -0.111722 103 59 SH651 651 Gln2 tRNA 41 53 41.93846 136.393362 89.165911 1.950198851 -0.111752 109 91 SH18242 18242 YML026C_13_223828_222987_INTRON_48_448 intron/exon 21.222256 98.003242 21.222256 77.780986 49.501621 1.694619421 -0.111777 131 87 SH7448 7448 snR69 3' 22.992825 91.061465 57.027145 1.75608163 -0.111788 108 23 SH16734 16734 YGL076C_7_365994_364333_INTRON_565_1032 intron 22.963291 112.790377 22.963291 90.827086 56.8951885 1.755075541 -0.111805 92 97 SH14888 14888 MT tRNA Ala 3' 22.103043 105.195599 22.103043 84.092556 53.0977995 1.725076523 -0.111838 93 4 SH11984 11984 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6806 6823 354.540902 616.06331 485.302106 2.686012176 -0.111879 200 101 SH12620 12620 MT_15S MT_15S 31.159438 149.801884 31.159438 119.642446 75.400942 1.877376772 -0.111899 112 93 SH15110 15110 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " intronic / ORF3exon3 22.527764 108.922311 22.527764 87.394547 54.9611555 1.740055855 -0.111928 83 8 SH19031 19031 YOR234C_15_779404_778554_INTRON_20_546 5' exon 29.736959 146.192885 29.736959 117.455926 73.5964425 1.866856822 -0.11193 82 52 SH9823 9823 RUF5-1 5' 39.721224 132.984941 86.3530825 1.936277845 -0.112015 127 100 SH1297 1297 Ile2 3' flank 23.436168 94.59891 59.017539 1.770981096 -0.112118 57 93 SH18368 18368 YMR079W_13_424988_426058_INTRON_10_165 intron 23.121969 114.252456 23.121969 92.130487 57.626228 1.760620193 -0.112137 3 100 SH19848 19848 Negative Control 26.125924 110.352254 68.239089 1.83403322 -0.112146 29 63 SH17504 17504 YJL136C_10_156971_156248_INTRON_25_484 exon/intron 24.828531 128.094711 24.828531 104.26618 64.5473555 1.809878454 -0.112152 94 24 SH16162 16162 YDR129C_4_715372_713333_INTRON_22_132 intron/exon 24.467071 125.821469 24.467071 102.354398 63.4107345 1.802162784 -0.11219 173 46 SH9947 9947 RUF5-1 RUF5-1 541 556 24.778847 104.009139 64.393993 1.808845356 -0.112233 82 61 SH2427 2427 Phe5 5' flank 24.199969 100.75 62.4749845 1.795706157 -0.112246 200 82 SH17954 17954 YLR185W_12_522665_523290_INTRON_8_366 intron 30.186831 147.360457 30.186831 118.173626 74.1802285 1.870288167 -0.112261 198 104 SH2642 2642 Pro3 3' flank 27.231061 112.816576 70.0238185 1.84524579 -0.112262 110 38 SH19313 19313 YPL198W_16_173151_174701_INTRON_12_420 intron 22.215206 106.209557 22.215206 84.994351 53.6047785 1.729203506 -0.112267 69 55 SH1314 1314 Ile3 5' flank 24.141841 100.279043 62.210442 1.793863287 -0.112274 3 92 SH13309 13309 MT COX1 COX1-ai5a 22.547164 109.126912 22.547164 87.579748 55.063456 1.740863466 -0.11229 58 19 SH9002 9002 snR17a / U3a U3a 296 308 26.504298 111.209579 68.8569385 1.837947709 -0.112325 147 86 SH18823 18823 YNL302C_14_62942_61957_INTRON_21_571 intron 25.067416 129.622441 25.067416 105.555025 65.3112205 1.8149878 -0.112385 168 93 SH16054 16054 YDL191W_4_117665_118518_INTRON_4_494 3' exon 27.403531 139.609421 27.403531 113.20589 70.3047105 1.846984424 -0.112429 64 62 SH15608 15608 YBR119W_2_479296_480281_INTRON_9_97 intron 29.614857 145.909361 29.614857 117.294504 73.4546805 1.866019474 -0.112447 177 44 SH8151 8151 snoRNA cluster 3; intergenic 29.306305 145.118226 29.306305 116.811921 73.059113 1.863674395 -0.112478 65 45 SH7724 7724 snoRNA cluster1 snR77/intergenic 25.088783 129.76564 25.088783 105.676857 65.38282 1.815463648 -0.112483 173 5 SH14697 14697 MT tRNA thr2 5' 23.126841 114.338923 23.126841 92.212082 57.6694615 1.760945896 -0.112595 166 68 SH477 477 Asp2 5' flank 24.15121 100.402165 62.2766875 1.794325504 -0.112729 100 77 SH21001 21001 YML085C spliced 28.051674 114.641688 71.346681 1.853373775 -0.112762 155 62 SH11934 11934 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6556 6571 39.483309 132.662865 86.073087 1.934867379 -0.11278 116 103 SH3221 3221 Thr1 5' flank 23.716531 96.899281 60.307906 1.780374249 -0.112816 41 68 SH16599 16599 YFL034C-A_6_64931_64242_INTRON_13_333 intron 23.2205 115.193553 23.2205 92.973053 58.0967765 1.764152036 -0.112884 173 18 SH9066 9066 snR14 / U4 RNA 5' 22.014855 83.521067 52.767961 1.722370313 -0.112893 73 45 SH7094 7094 snR63 5' 30.535061 118.746854 74.6409575 1.872977202 -0.112898 113 16 SH15069 15069 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.056699 129.600274 25.056699 105.543575 65.300137 1.814914092 -0.112936 134 64 SH6776 6776 snR50 snR50 56 74 27.256225 112.913594 70.0849095 1.845624517 -0.112956 138 69 SH18985 18985 YOR096W_15_505793_506766_INTRON_145_545 intron 23.631238 118.868928 23.631238 96.23769 59.934464 1.777676626 -0.113022 68 98 SH19573 19573 AEP2/ATP13 0.6 71.123639 181.709431 126.416535 2.101803882 -0.113062 162 26 SH16450 16450 YER074W-A_0_5_307649_INTRON_95_196 5' exon 22.630253 109.934669 22.630253 88.304416 55.4673345 1.744037296 -0.11307 132 99 SH8355 8355 snoRNA cluster4 3' 22.961957 112.899124 22.961957 90.937167 56.949562 1.755490388 -0.113075 213 11 SH14753 14753 MT ORF11; tRNA Leu; tRNA Gln ORF11 23.224332 115.245647 23.224332 93.021315 58.1228235 1.764346703 -0.113075 126 66 SH19637 19637 RNA14 2.2 26.088467 110.323464 68.2059655 1.833822361 -0.113091 46 38 SH15195 15195 MT COX3 cox3 29.186009 144.843478 29.186009 116.657469 72.921739 1.862857017 -0.113102 165 36 SH3504 3504 Tyr1 tRNA 61 73 36.774219 128.434773 82.604496 1.917003686 -0.113139 126 67 SH18027 18027 YLR306W_12_744151_744851_INTRON_4_137 3' exon 53.909045 207.902042 53.909045 154.992997 104.451021 2.01891269 -0.113155 95 4 SH965 965 Gly1 3' flank 22.429322 86.736882 54.583102 1.737058213 -0.113158 79 8 SH14304 14304 MT VAR1 includes 5’ processing site VAR1 25.391772 131.741586 25.391772 107.349814 66.370793 1.821977007 -0.113164 164 24 SH14867 14867 MT tRNA Ser2; tRNA Arg2 3' 22.228331 106.403947 22.228331 85.175616 53.7019735 1.729990246 -0.113164 214 14 SH2268 2268 Phe2 5' flank 24.460146 102.396424 63.428285 1.802282969 -0.113169 150 80 SH21459 21459 copy of SH635 23.324477 93.819287 58.571882 1.767689179 -0.113179 117 30 SH6171 6171 snR40 5' 24.481011 102.509532 63.4952715 1.802741385 -0.113203 213 87 SH13479 13479 MT COX1 intronic 22.309578 107.118935 22.309578 85.809357 54.0594675 1.732871763 -0.11321 195 63 SH15897 15897 YDL083C_4_307788_306925_INTRON_25_456 5' exon 27.973355 141.47245 27.973355 114.499095 71.236225 1.852700897 -0.113217 161 9 SH16185 16185 YDR367W_4_1212837_1213603_INTRON_31_131 intron 22.795739 111.422641 22.795739 89.626902 56.2113205 1.749823788 -0.11322 111 93 SH19749 19749 Negative Control 24.413401 102.153433 63.283417 1.801289921 -0.113223 128 45 SH14809 14809 "MT tRNAs (Lys, Arg1, Gly)" intergenic 22.879187 112.173234 22.879187 90.294047 56.586617 1.752713731 -0.113259 56 19 SH17311 17311 YHR203C_8_505526_504472_INTRON_15_283 intron 22.636345 110.006494 22.636345 88.370149 55.503247 1.744318391 -0.113262 38 5 SH16625 16625 YFL039C_6_54695_53260_INTRON_11_318 intron 22.682656 110.421514 22.682656 88.738858 55.710757 1.74593906 -0.113298 145 23 SH2861 2861 Pro7 3' flank 23.077248 91.885753 57.4815005 1.759528096 -0.11333 85 92 SH16524 16524 YER131W_5_423587_424307_INTRON_1_361 intron 23.841129 120.794577 23.841129 97.953448 60.8972885 1.784597956 -0.113351 153 26 SH15991 15991 YDL136W_4_217600_218367_INTRON_4_408 intron 31.277161 150.184605 31.277161 119.907444 75.5923025 1.878477574 -0.113394 59 21 SH17917 17917 YLR061W_12_263195_263949_INTRON_13_401 intron 22.007782 104.520462 22.007782 83.51268 52.760231 1.722306688 -0.113402 16 48 SH16363 16363 YEL012W_5_131772_132551_INTRON_6_128 intron 27.31838 139.396579 27.31838 113.078199 70.1982895 1.84632653 -0.11342 140 66 SH1485 1485 Leu2 3' flank 23.074789 91.875431 57.47511 1.759479811 -0.113429 148 86 SH8501 8501 snR19 / U1 RNA U1 1 18 52.865258 153.414056 103.139657 2.013425683 -0.113473 163 9 SH8966 8966 snR17a / U3a U3a 116 138 22.689278 88.808085 55.7486815 1.7462346 -0.11348 135 68 SH12513 12513 MT_ORF6 + ORF7 (hypothetical) 5'/ORF6 23.070757 113.921617 23.070757 91.85086 57.4608085 1.759371732 -0.11351 79 21 SH6226 6226 snR42 5' 25.937815 110.010044 67.9739295 1.832342377 -0.113531 111 96 SH6021 6021 snR37 snR37 21 43 22.395531 86.508414 54.4519725 1.736013617 -0.113546 214 49 SH15224 15224 MT COX3 cox3 24.221538 124.288024 24.221538 101.066486 62.644012 1.796879564 -0.113601 69 68 SH898 898 Glu3 tRNA 1 17 3228.336824 4335.389342 3781.863083 3.577705802 -0.113621 185 88 SH3368 3368 Thr4 5' flank 22.566617 87.855812 55.2112145 1.742027301 -0.113635 29 97 SH13749 13749 MT COB Exon1 24.574585 126.614872 24.574585 103.040287 63.807436 1.804871294 -0.113639 116 74 SH14664 14664 MT 21S rRNA 21S rRNA4 27.744997 140.772093 27.744997 114.027096 70.8860465 1.850560755 -0.113644 100 16 SH13153 13153 MT COX1 intronic 22.96273 112.961041 22.96273 90.998311 56.9805205 1.755726412 -0.113652 108 75 SH1993 1993 Lys3 5' flank 40.631424 134.520676 87.57605 1.942385353 -0.113725 137 67 SH15465 15465 YBL087C_2_60732_59815_INTRON_43_546 intron 21.539451 100.715342 21.539451 80.175891 50.857671 1.706356468 -0.113732 210 43 SH15810 15810 YDL061C_4_341182_340627_INTRON_1_408 intron 26.763443 137.633398 26.763443 111.869955 69.316699 1.840837873 -0.113735 2 81 SH15188 15188 MT COX3 cox3 23.402341 116.89355 23.402341 94.491209 58.946775 1.77046005 -0.113768 207 85 SH18988 18988 YOR096W_15_505793_506766_INTRON_145_545 intron/exon 22.495927 108.812944 22.495927 87.317017 54.906472 1.739623539 -0.113808 35 32 SH13796 13796 MT COB intronic 25.12375 130.097996 25.12375 105.974246 65.548998 1.816566057 -0.113821 122 91 SH21064 21064 YMR201C spliced 54.165348 155.443698 104.804523 2.020380026 -0.113868 160 94 SH7440 7440 snR69 101 + 3' 101 26.749711 111.847596 69.2986535 1.840724796 -0.113872 161 59 SH13000 13000 MT COX1 COX1ai2 22.566235 109.442425 22.566235 87.87619 55.2212125 1.742105938 -0.113889 64 16 SH16658 16658 YFR032C-A_6_223758_223245_INTRON_1_331 exon/intron 25.75923 134.138639 25.75923 109.379409 67.5693195 1.829749545 -0.113891 167 28 SH6841 6841 snR52 3' 24.682115 103.632315 64.157215 1.807245503 -0.113908 43 81 SH13215 13215 MT COX1 COX1-ai4 23.213048 115.227111 23.213048 93.014063 58.1135555 1.764277447 -0.113927 144 40 SH1146 1146 His1 5' flank 22.68083 88.784298 55.732564 1.746109023 -0.113943 30 72 SH14295 14295 MT VAR1 includes 5’ processing site VAR1 23.357577 116.513463 23.357577 94.155886 58.7567315 1.769057629 -0.113961 138 59 SH17253 17253 YHR097C_8_298611_297387_INTRON_126_249 intron/exon 26.528811 136.890501 26.528811 111.36169 68.9452505 1.838504354 -0.113974 37 102 SH1241 1241 Ile2 5' flank 25.990408 110.154908 68.072658 1.832972709 -0.113982 42 98 SH9861 9861 RUF5-1 RUF5-1 111 131 28.639314 115.840313 72.2398135 1.858776616 -0.114014 199 21 SH18354 18354 YMR033W_13_337787_339276_INTRON_31_116 5' exon 23.619159 118.859921 23.619159 96.240762 59.9299605 1.777643991 -0.11403 11 38 SH4115 4115 SRP RNA SRP RNA 466 483 27.484909 113.481211 70.48306 1.848084751 -0.114036 86 84 SH5861 5861 snR35 snR35 491 507 25.772676 109.464989 67.6188325 1.830067668 -0.114047 8 14 SH12382 12382 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.446854 145.570058 29.446854 117.123204 73.285029 1.865015264 -0.114073 60 22 SH19112 19112 YOR312C_15_901173_900242_INTRON_2_427 3' exon 23.659546 119.228469 23.659546 96.568923 60.1142345 1.778977321 -0.114084 198 67 SH15613 15613 YBR181C_2_592732_591670_INTRON_7_358 exon/intron 27.503252 140.028427 27.503252 113.525175 70.5142135 1.848276666 -0.114097 152 48 SH20409 20409 YFR032C-A spliced 45.625106 142.289357 93.9572315 1.972930212 -0.114101 34 28 SH9700 9700 RUF4 RUF4 276 297 22.931849 90.795213 56.863531 1.754833824 -0.114113 211 13 SH20682 20682 YIL111W spliced 22.804848 89.783777 56.2943125 1.75046452 -0.114121 14 76 SH13322 13322 MT COX1 COX1-ai5a 27.062087 138.617328 27.062087 112.555241 69.808664 1.843909327 -0.114127 153 64 SH7994 7994 snoRNA cluster 2 intergenic 24.841063 128.335526 24.841063 104.494463 64.667763 1.810687838 -0.114127 152 6 SH1439 1439 Leu2 5' flank 25.069558 105.711165 65.3903615 1.815513738 -0.114132 137 21 SH7132 7132 snR63 snR63 166 182 22.632443 88.427424 55.5299335 1.744527153 -0.114214 26 55 SH6037 6037 snR37 snR37 101 115 341.358805 597.075324 469.2170645 2.671373798 -0.114215 86 82 SH2699 2699 Pro4 3' flank 23.981533 99.177052 61.5792925 1.789434695 -0.114233 58 85 SH1735 1735 Leu7 5' flank 25.87989 109.92438 67.902135 1.83188343 -0.114303 185 51 SH13924 13924 MT COB Cytbi3 27.446911 139.861 27.446911 113.414089 70.4305 1.847760772 -0.114306 193 26 SH11530 11530 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4536 4555 330.084914 580.029358 455.057136 2.658065929 -0.114328 5 57 SH15592 15592 YBR089C-A_2_426588_426148_INTRON_1_114 5' exon 29.444953 145.580194 29.444953 117.135241 73.290097 1.865045296 -0.114338 39 95 SH3938 3938 RNase MRP RNaseMRP 106 122 153.506747 309.870414 231.6885805 2.364904629 -0.114382 62 14 SH3748 3748 Val4 5' flank 26.601162 111.548843 69.0750025 1.839320909 -0.11441 73 81 SH12129 12129 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7531 7549 24.374263 102.041768 63.2080155 1.800772155 -0.114413 172 63 SH16585 16585 YFL034C-A_6_64931_64242_INTRON_13_333 intron 22.08379 105.257443 22.08379 84.173653 53.1287215 1.725329365 -0.114441 209 50 SH17114 17114 YHR010W_8_126513_127484_INTRON_32_592 5' exon 57.321871 216.661531 57.321871 160.33966 108.8307655 2.036751684 -0.114461 166 99 SH20916 20916 YLR344W spliced 25.309623 107.021849 66.165736 1.820633148 -0.114485 90 9 SH12553 12553 MT_15S 5' 21.923683 103.919983 21.923683 82.9963 52.4599915 1.719828216 -0.114507 175 28 SH6830 6830 snR52 snR52 56 75 29.037466 116.501919 72.7696925 1.86195054 -0.114512 122 45 SH5423 5423 snR31 snR31 181 198 25.558991 108.359712 66.9593515 1.825811239 -0.114525 4 95 SH21084 21084 YMR292W spliced 27.992505 114.620747 71.306626 1.853129888 -0.114532 12 20 SH3195 3195 Ser5 3' flank 49.173082 147.819049 98.4960655 1.993418883 -0.114546 110 24 SH17696 17696 YKL006W_11_431544_432358_INTRON_130_527 intron 20.999926 96.444568 20.999926 76.444642 48.722284 1.687727639 -0.114549 24 92 SH13074 13074 MT COX1 COX1ai3 24.690515 127.422108 24.690515 103.731593 64.211054 1.807609799 -0.11458 127 96 SH8799 8799 LSR1 / U2 RNA U2 636 650 26.168193 110.590599 68.379396 1.83492526 -0.114591 26 8 SH8598 8598 snR19 / U1 RNA U1 486 498 46.284101 143.330857 94.807479 1.976842599 -0.114604 73 13 SH19525 19525 CBP1 1.2 23.26744 93.507172 58.387306 1.766318437 -0.114609 97 63 SH12569 12569 MT_15S MT_15S 23.104755 114.335004 23.104755 92.230249 57.667502 1.760931139 -0.114613 149 22 SH8058 8058 snoRNA cluster 2 intergenic 49.607287 197.098247 49.607287 148.49096 99.0491235 1.995850637 -0.114616 103 61 SH14193 14193 MT COB Exon6 23.105827 114.349512 23.105827 92.243685 57.674756 1.760985766 -0.114666 22 92 SH3249 3249 Thr1 3' flank 24.408389 102.243411 63.3259 1.801581371 -0.114676 53 63 SH2000 2000 Lys3 5' flank 22.642826 88.552662 55.597744 1.745057169 -0.114681 79 88 SH621 621 Gln1 3' flank 73.338792 185.320813 129.3298025 2.111698614 -0.11469 128 50 SH21685 21685 copy of SH10240 22.722984 89.190688 55.956836 1.74785315 -0.114725 137 50 SH1670 1670 Leu6 5' flank 22.202185 85.115973 53.659079 1.729643214 -0.114765 32 2 SH756 756 Gln4 tRNA 51 63 51.925624 152.063378 101.994501 2.008576758 -0.114799 161 71 SH17409 17409 YIL106W_9_166412_167441_INTRON_21_105 5' exon 22.341272 107.548905 22.341272 86.207633 54.2744525 1.734595451 -0.114897 142 32 SH14787 14787 MT ORF11; tRNA Leu; tRNA Gln 3' 23.275695 115.877608 23.275695 93.601913 58.438804 1.766701319 -0.114919 191 49 SH1427 1427 Leu2 5' flank 23.948393 98.980042 61.4642175 1.788622357 -0.114937 12 68 SH8635 8635 snR19 / U1 RNA 3' 24.723739 103.940163 64.331951 1.808426722 -0.114974 63 63 SH15725 15725 YBR255C-A_2_727032_726576_INTRON_64_157 intron/exon 23.795152 120.542375 23.795152 97.747223 60.7711875 1.783697723 -0.114985 168 34 SH6027 6027 snR37 snR37 51 68 35.245398 126.112491 80.6789445 1.906760208 -0.115 55 18 SH19049 19049 YOR234C_15_779404_778554_INTRON_20_546 intron 22.757041 111.244268 22.757041 89.487227 56.122134 1.749134176 -0.115008 138 96 SH5054 5054 snR10 3' 22.508003 87.523824 55.0159135 1.740488329 -0.115034 67 21 SH4252 4252 telomerase RNA telomerase 296 313 22.476985 87.280863 54.878924 1.739405588 -0.115038 20 69 SH13551 13551 MT COX1 intronic 35.072371 159.910926 35.072371 125.838555 80.455463 1.905555538 -0.115097 196 98 SH1692 1692 Leu6 tRNA 26 38 641.215954 1035.502366 838.35916 2.923430114 -0.115102 104 82 SH17771 17771 YKL180W_11_109271_110131_INTRON_310_615 intron 64.492635 235.030903 64.492635 171.538268 118.0154515 2.071938872 -0.11511 53 103 SH15023 15023 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.082958 105.311938 22.082958 84.22898 53.155969 1.725552039 -0.115141 73 66 SH1206 1206 Ile1 5' flank - tRNA7 7 24.065819 99.954818 62.0103185 1.792463962 -0.115144 132 70 SH4877 4877 snR8 snR8 166 178 24.223024 101.240701 62.7318625 1.797488182 -0.115163 162 13 SH5761 5761 snR35 5' - 7 -9 7 28.670839 115.956847 72.313843 1.859221442 -0.115194 85 83 SH16405 16405 YER056C-A_5_270183_269421_INTRON_38_434 intron 22.073417 105.233834 22.073417 84.160417 53.116917 1.72523286 -0.115197 167 27 SH16605 16605 YFL034C-B_6_63992_63015_INTRON_21_134 exon/intron 22.498161 108.961222 22.498161 87.463061 54.980611 1.740209562 -0.115214 63 103 SH12894 12894 MT COX1 intronic 24.214589 124.395248 24.214589 101.180659 62.697624 1.797251083 -0.11525 133 65 SH1620 1620 Leu5 5' flank 23.023409 91.637674 57.3305415 1.758386044 -0.115253 128 79 SH2472 2472 Phe5 3' flank 24.335542 101.905911 63.1207265 1.800171989 -0.115276 20 52 SH19633 19633 RNA14 2.2 24.655488 103.604876 64.130182 1.807062472 -0.115309 205 85 SH2189 2189 Met2 3' flank 22.539473 87.799919 55.169696 1.741700591 -0.115349 186 26 SH9079 9079 snR14 / U4 RNA U4 11 27 74.256674 186.846566 130.55162 2.115782265 -0.115388 173 68 SH14525 14525 MT 21S rRNA 21S rRNA3 24.015114 122.586267 24.015114 99.571153 61.7931335 1.790940219 -0.115425 156 27 SH20165 20165 YDL136W spliced 29.277327 116.932805 73.105066 1.863947474 -0.115426 42 88 SH15309 15309 YAL001C_1_151163_147591_INTRON_71_160 3'exon 23.681655 119.561042 23.681655 96.879387 60.280521 1.780176997 -0.115428 78 55 SH13718 13718 MT tRNAGlu (and 5' processing site for COB) 3' (and 5' proc site for COB) 25.856161 134.793927 25.856161 109.937766 67.8969635 1.831850352 -0.115451 33 27 SH20387 20387 YFL034C-B spliced 24.80934 104.434559 64.6219495 1.810380056 -0.115454 172 10 SH21467 21467 copy of SH1003 138.000782 286.295447 212.1481145 2.326639176 -0.115458 129 6 SH17178 17178 YHR021C_8_148660_147862_INTRON_4_553 intron 34.91274 159.515623 34.91274 125.602883 80.2578115 1.904487313 -0.115468 36 60 SH1493 1493 Leu3 5' flank 25.26636 106.874097 66.0702285 1.820005809 -0.11548 30 46 SH3839 3839 RNaseP RNaseP 161 178 107.46937 239.229323 173.3493465 2.238922209 -0.11549 64 15 SH10244 10244 RUF6 3' 23.948826 99.039707 61.4942665 1.788834626 -0.11549 131 79 SH4385 4385 telomerase RNA telomerase 961 977 38.812448 131.784777 85.2986125 1.930941967 -0.115502 130 13 SH12446 12446 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.670186 161.504148 35.670186 126.833962 81.252074 1.909834455 -0.115581 208 98 SH18491 18491 YMR194W_13_651144_651909_INTRON_17_479 intron 22.075525 105.289233 22.075525 84.213708 53.1446165 1.725459277 -0.115618 182 85 SH3962 3962 RNase MRP RNaseMRP 226 240 24.182746 100.960075 62.5714105 1.796375945 -0.115637 133 21 SH10368 10368 RUF7 RUF7 451 467 24.080236 100.124121 62.1021785 1.793106835 -0.115649 129 49 SH2444 2444 Phe5 5' flank - tRNA8 8 32.628919 122.140572 77.3847455 1.888655359 -0.115652 105 104 SH12247 12247 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 40.142305 173.033624 40.142305 133.891319 87.016812 1.939603168 -0.115657 172 37 SH7181 7181 snR64 5' 2816.599519 3851.928876 3334.264198 3.523000009 -0.115722 36 95 SH2655 2655 Pro4 5' flank 30.284256 118.52347 74.403863 1.871595484 -0.115742 166 97 SH146 146 Arg1 3' flank 25.377503 107.49421 66.4358565 1.822402538 -0.115783 27 61 SH16477 16477 YER102W_5_362729_363698_INTRON_1_360 intron 34.759605 159.13446 34.759605 125.374855 80.06723 1.903454804 -0.115786 207 95 SH12305 12305 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 35.285989 160.515933 35.285989 126.229944 80.7579665 1.907185375 -0.115817 130 20 SH3813 3813 RNaseP RNaseP 31 47 33.471899 123.441949 78.456924 1.894631277 -0.115828 78 44 SH19838 19838 Negative Control 26.544883 111.508996 69.0269395 1.839018618 -0.115858 101 76 SH7163 7163 snR63 3' 24.218959 101.28798 62.7534695 1.797637742 -0.115939 60 66 SH18557 18557 YMR292W_13_854795_855293_INTRON_23_104 5' exon 26.675246 137.480051 26.675246 111.804805 69.2400255 1.840357219 -0.115943 62 89 SH7927 7927 snoRNA cluster1 snR72 24.518756 126.452262 24.518756 102.933506 63.726131 1.804317552 -0.115982 8 17 SH18370 18370 YMR079W_13_424988_426058_INTRON_10_165 intron 23.391676 117.014353 23.391676 94.622677 59.0071765 1.770904834 -0.115994 163 26 SH17774 17774 YKL180W_11_109271_110131_INTRON_310_615 intron 24.629675 127.154058 24.629675 103.524383 64.077029 1.806702367 -0.116006 163 7 SH18275 18275 YML056C_13_164176_162194_INTRON_461_868 intron 60.26483 224.299178 60.26483 165.034348 112.649589 2.051729612 -0.116029 181 94 SH5365 5365 snR30 3' 24.584158 103.28685 63.935504 1.805742093 -0.116058 148 89 SH15506 15506 YBR048W_2_332790_333771_INTRON_46_556 intron 25.055234 129.850612 25.055234 105.795378 65.425306 1.815745763 -0.116067 57 83 SH9956 9956 RUF5-1 RUF5-1 586 602 24.281798 101.685625 62.9837115 1.799228249 -0.11608 113 90 SH11156 11156 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2666 2679 24.406998 102.35014 63.378569 1.801942429 -0.116097 154 34 SH6418 6418 snR45 5' 23.044377 91.887731 57.466054 1.759411377 -0.116101 157 51 SH2297 2297 Phe2 81-92 + 3' flank 81 22.438974 87.080001 54.7594875 1.738459375 -0.116101 49 39 SH18414 18414 YMR133W_13_536206_537608_INTRON_1243_1358 5' exon 26.732226 137.677288 26.732226 111.945062 69.338644 1.840975344 -0.116168 179 24 SH1548 1548 Leu4 5' flank 25.006782 105.551689 65.2792355 1.81477506 -0.116246 181 66 SH13490 13490 MT COX1 intronic 25.990716 135.280204 25.990716 110.289488 68.140102 1.833402779 -0.11627 171 69 SH14415 14415 MT 21S rRNA 21S rRNA3 148.276295 449.491586 148.276295 302.215291 225.245793 2.352656688 -0.116305 117 10 SH3557 3557 Tyr2 tRNA 56 68 30.70967 119.21135 74.96051 1.874832533 -0.116313 16 2 SH10051 10051 RUF6 RUF6 101 118 25.164842 106.404037 65.7844395 1.818123179 -0.116347 26 66 SH16968 16968 YGR034W_7_555923_556666_INTRON_20_496 intron 33.075929 154.945313 33.075929 122.869384 77.9726565 1.891942331 -0.11635 98 3 SH15098 15098 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 22.637106 110.30028 22.637106 88.663174 55.65014 1.745466261 -0.116361 38 43 SH21225 21225 YOR182C spliced 26.489328 111.414962 68.952145 1.838547781 -0.116367 10 4 SH14477 14477 MT 21S rRNA 21S rRNA3 22.621448 110.162029 22.621448 88.540581 55.5810145 1.74492647 -0.116373 138 30 SH20713 20713 YJL041W spliced 22.775771 89.772786 56.2742785 1.750309936 -0.116466 73 28 SH17636 17636 YJR094W-A_10_608000_608553_INTRON_3_277 intron/exon 46.785448 190.033163 46.785448 144.247715 95.5165815 1.980078771 -0.11648 158 75 SH9684 9684 RUF4 RUF4 196 213 24.712343 104.003416 64.3578795 1.808601726 -0.116492 56 87 SH16511 16511 YER117W_5_396765_397649_INTRON_43_513 intron 23.972249 122.30469 23.972249 99.332441 61.652345 1.7899496 -0.116499 158 47 SH1951 1951 Lys2 5' flank 22.578137 88.213564 55.3958505 1.743477235 -0.116534 128 78 SH18017 18017 YLR306W_12_744151_744851_INTRON_4_137 5' exon 26.030382 135.425481 26.030382 110.395099 68.2127405 1.833865498 -0.116546 173 93 SH8129 8129 snoRNA cluster 3; snR41 23.719065 120.015159 23.719065 97.296094 60.5075795 1.78180978 -0.116595 28 100 SH20933 20933 YLR388W spliced 26.495552 111.442577 68.9690645 1.838654335 -0.116599 112 63 SH14849 14849 MT tRNA Ser2; tRNA Arg2 5' 22.41452 108.349305 22.41452 86.934785 54.6746525 1.737786031 -0.11661 177 41 SH1100 1100 Gly4 5' flank 23.149247 92.769492 57.9593695 1.763123652 -0.116619 138 58 SH18125 18125 YLR388W_12_898158_898821_INTRON_1_488 intron 22.451678 108.679004 22.451678 87.227326 54.839502 1.739093502 -0.116625 187 52 SH19801 19801 Negative Control 25.462799 108.023537 66.743168 1.824406817 -0.116638 70 82 SH5155 5155 snR13 5' 22.488555 87.518765 55.00366 1.740391589 -0.116647 72 93 SH18558 18558 YMR292W_13_854795_855293_INTRON_23_104 exon/intron 24.564834 126.797264 24.564834 103.23243 63.898632 1.80549156 -0.116653 19 14 SH12725 12725 MT COX1 5' / exon1 29.858885 146.774164 29.858885 117.915279 73.887082 1.868568515 -0.11666 132 53 SH12646 12646 MT_15S MT_15S 21.567104 101.179024 21.567104 80.61192 51.089512 1.708331754 -0.116677 80 48 SH14069 14069 MT COB Cytbi4 25.524709 132.88495 25.524709 108.360241 66.942475 1.825701765 -0.116693 39 16 SH3115 3115 Ser4 5' flank 26.294532 110.99929 68.646911 1.836620999 -0.116717 197 82 SH8472 8472 snoRNA cluster 5 3' 23.979427 122.401626 23.979427 99.422199 61.700813 1.790290887 -0.116807 96 17 SH13493 13493 MT COX1 Exon 5g 23.975773 122.369855 23.975773 99.394082 61.6849275 1.790179059 -0.116822 203 96 SH17170 17170 YHR016C_8_138446_136872_INTRON_48_215 3' exon 21.574406 101.25025 21.574406 80.675844 51.125125 1.708634383 -0.116822 22 49 SH12339 12339 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.256451 139.402522 27.256451 113.146071 70.201261 1.846344913 -0.116823 71 72 SH21684 21684 copy of SH10239 23.948691 99.174155 61.561423 1.78930865 -0.116823 31 13 SH305 305 Arg4 3' flank 26.044185 110.445805 68.244995 1.834070806 -0.11688 168 12 SH1569 1569 Leu4 tRNA 16 28 24.336585 102.040058 63.1883215 1.800636819 -0.116884 140 50 SH15035 15035 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.278356 107.175519 22.278356 85.897163 54.0877595 1.733098992 -0.11689 98 89 SH16380 16380 YER007C-A_5_166884_166236_INTRON_12_114 exon/intron 22.038978 105.083811 22.038978 84.044833 53.0419055 1.724619117 -0.116896 70 43 SH16407 16407 YER056C-A_5_270183_269421_INTRON_38_434 intron 25.369084 131.912475 25.369084 107.543391 66.4562375 1.82253575 -0.116901 91 26 SH13806 13806 MT COB intronic/exon2 24.699661 127.672932 24.699661 103.973271 64.336466 1.808457201 -0.11695 147 4 SH6757 6757 snR50 5' 24.591347 103.399867 63.995607 1.806150163 -0.116981 108 82 SH3144 3144 Ser4 3' flank 21.859697 82.745036 52.3023665 1.71852134 -0.117038 47 16 SH21764 21764 copy of SH13599 22.388765 86.772499 54.580632 1.73703856 -0.117042 106 16 SH19818 19818 Negative Control 27.586635 113.88669 70.7366625 1.849644565 -0.117055 126 96 SH18324 18324 YML085C_13_99400_97941_INTRON_26_141 3' exon 23.278322 116.107333 23.278322 93.829011 58.5536665 1.767554095 -0.117065 207 92 SH3011 3011 Ser2 tRNA 16 32 223.197118 417.144536 320.170827 2.505381758 -0.117103 135 26 SH11348 11348 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3626 3643 24.485817 102.850565 63.668191 1.80392251 -0.11712 108 72 SH3253 3253 Thr1 3' flank 22.198112 85.298424 53.748268 1.730364474 -0.117166 45 26 SH7512 7512 snR79 5' 36.15296 127.709603 81.9312815 1.913449748 -0.117184 174 48 SH16764 16764 YGL087C_7_346902_346404_INTRON_12_96 3' exon 22.687432 110.825639 22.687432 89.138207 55.9128195 1.747511393 -0.117184 67 39 SH5547 5547 snR33 snR33 21 35 24.841604 104.751644 64.796624 1.811552379 -0.117225 164 63 SH7166 7166 snR63 3' 24.368645 102.238308 63.3034765 1.801427561 -0.117237 31 97 SH6504 6504 snR46 snR46 11 27 24.575443 103.337596 63.9565195 1.805884822 -0.117255 183 50 SH6994 6994 snR60 snR60 51 72 29.416355 117.258186 73.3372705 1.865324742 -0.117302 147 17 SH14233 14233 MT ATP9 3' 22.626103 110.290343 22.626103 88.66424 55.6451715 1.745427485 -0.117311 116 38 SH11611 11611 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4941 4956 37.131421 129.268309 83.199865 1.920122622 -0.117316 23 39 SH21115 21115 YNL096C spliced 25.489551 108.228311 66.858931 1.825159428 -0.117361 145 26 SH2997 2997 Ser2 5' flank 23.380586 94.678405 59.0294955 1.771069072 -0.117474 2 60 SH4046 4046 SRP RNA SRP RNA 121 140 22.869954 90.620559 56.7452565 1.753929563 -0.117488 191 75 SH4150 4150 SRP RNA SRP RNA 641 656 39.190359 132.520326 85.8553425 1.933767325 -0.117521 11 56 SH3999 3999 RNase MRP 3' 24.978056 105.506143 65.2420995 1.814527928 -0.117548 192 57 SH13400 13400 MT COX1 intronic 23.576515 118.825965 23.576515 96.24945 59.9129825 1.77752094 -0.117571 162 56 SH9428 9428 RUF2 5' - 3 -19 3 28.619473 116.009837 72.314655 1.859226319 -0.117605 174 31 SH8123 8123 snoRNA cluster 3; snR41 22.946643 113.195636 22.946643 91.248993 57.097818 1.756619512 -0.117634 167 29 SH13917 13917 MT COB Cytbi3 22.690655 110.902395 22.690655 89.21174 55.9511975 1.747809386 -0.117698 28 10 SH15232 15232 MT COX3 cox3 / 3' 32.955301 154.722784 32.955301 122.767483 77.861392 1.891322164 -0.117731 111 73 SH21530 21530 copy of SH3750 25.344592 107.482703 66.4136475 1.822257333 -0.117737 168 78 SH21700 21700 copy of SH10875 3533.833276 4705.617798 4119.725537 3.614868284 -0.117785 165 21 SH11020 11020 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1986 2001 22139.47275 23581.10512 22860.28894 4.359081715 -0.117789 61 9 SH21535 21535 copy of SH3941 23.156788 92.942452 58.04962 1.763799381 -0.117813 164 55 SH19994 19994 YBR048W spliced 24.439721 102.662254 63.5509875 1.803122303 -0.11782 160 92 SH21698 21698 copy of SH10663 35.305664 126.38961 80.847637 1.907667331 -0.117829 198 16 SH1132 1132 Gly4 3' flank 28.214647 115.308001 71.761324 1.855890443 -0.117878 58 81 SH21711 21711 copy of SH11291 22.311128 86.242294 54.276711 1.734613523 -0.117886 122 65 SH688 688 Gln3 5' flank 24.793043 104.548879 64.670961 1.810709315 -0.117907 153 68 SH3513 3513 Tyr1 3' flank 23.684321 97.148155 60.416238 1.781153679 -0.117913 154 43 SH5625 5625 snR34 snR34 46 65 23.007407 91.766848 57.3871275 1.758814487 -0.117941 154 9 SH14626 14626 MT 21S rRNA Sce1 endonuc 22.978981 113.521424 22.978981 91.542443 57.260712 1.757856744 -0.117986 107 21 SH16736 16736 YGL076C_7_365994_364333_INTRON_565_1032 intron 23.036106 114.039906 23.036106 92.0038 57.519953 1.759818523 -0.118001 84 34 SH287 287 Arg4 31-46 31 46 32.231744 121.665771 76.9487575 1.886201612 -0.118007 69 38 SH7750 7750 snoRNA cluster1 intergenic/snR76 128.795201 400.376056 128.795201 272.580855 200.688028 2.302521466 -0.118034 186 25 SH12512 12512 MT_ORF6 + ORF7 (hypothetical) 5'/ORF6 23.747479 120.417708 23.747479 97.670229 60.708854 1.783252035 -0.118049 91 96 SH14701 14701 MT tRNA thr2 5' / tRNA 22.12857 105.968738 22.12857 84.840168 53.484369 1.728226876 -0.118071 8 39 SH17386 17386 YIL069C_9_232366_231550_INTRON_4_412 intron 30.051046 147.348244 30.051046 118.297198 74.174122 1.870252414 -0.118106 99 94 SH14908 14908 MT tRNA Tyr 5' 30.755947 149.141849 30.755947 119.385902 75.0709245 1.875471764 -0.118109 3 22 SH19638 19638 RNA14 2.2 23.844089 98.461641 61.152865 1.786416808 -0.118158 49 48 SH121 121 Arg1 5' flank 22.636873 88.829006 55.7329395 1.746111949 -0.118167 177 30 SH14786 14786 MT ORF11; tRNA Leu; tRNA Gln 3' 25.199649 130.944085 25.199649 106.744436 65.9720425 1.81935993 -0.118191 103 99 SH14187 14187 MT COB Exon6 24.686571 127.693504 24.686571 104.006933 64.346752 1.80852663 -0.118216 129 80 SH3647 3647 Val2 5' flank 22.848126 90.518726 56.683426 1.753456092 -0.118256 27 95 SH12134 12134 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7556 7569 24.677178 103.960308 64.318743 1.808337548 -0.118258 129 4 SH5309 5309 snR30 snR30 396 412 40.748985 135.019058 87.8840215 1.943909922 -0.118333 165 35 SH5411 5411 snR31 snR31 121 137 26.551512 111.672906 69.112209 1.839554774 -0.118375 183 48 SH20187 20187 YDL219W spliced 23.241393 93.664353 58.452873 1.766805862 -0.118386 187 59 SH18596 18596 YNL069C_14_494998_493953_INTRON_29_477 intron 35.049851 160.06111 35.049851 126.011259 80.530555 1.905960692 -0.1184 135 7 SH18644 18644 YNL112W_14_413636_416278_INTRON_1274_2275 intron 21.691556 102.342539 21.691556 81.650983 51.6712695 1.713249132 -0.118472 196 88 SH4663 4663 snR3 3' 24.345909 102.22033 63.2831195 1.801287879 -0.118517 195 73 SH8720 8720 LSR1 / U2 RNA U2 241 259 21.682056 81.588805 51.6354305 1.712947802 -0.118547 187 10 SH14907 14907 MT tRNA Tyr 5' 24.109288 123.771659 24.109288 100.662371 62.3858295 1.795085954 -0.118571 143 44 SH12114 12114 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7456 7473 206.987543 392.753386 299.8704645 2.476933692 -0.118598 113 43 SH16222 16222 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 24.632373 127.384288 24.632373 103.751915 64.192144 1.807481881 -0.118628 10 28 SH2988 2988 Ser2 5' flank 23.566928 96.280834 59.923881 1.777599933 -0.118666 116 16 SH20153 20153 YDL125C spliced 22.863308 90.679871 56.7715895 1.754131054 -0.118674 191 54 SH17665 17665 YKL006C-A_11_430270_429836_INTRON_37_177 exon/intron 25.777994 134.670003 25.777994 109.892009 67.8350015 1.831453839 -0.118677 149 50 SH14599 14599 MT 21S rRNA Sce1 endonuc 22.494332 109.245998 22.494332 87.751666 55.122999 1.741332838 -0.118691 161 83 SH19692 19692 Negative Control 24.906359 105.219588 65.0629735 1.813333907 -0.118712 113 82 SH5085 5085 snR11 snR11 26 40 28.554194 115.967585 72.2608895 1.858903303 -0.118717 36 51 SH16551 16551 YER133W_5_432491_433954_INTRON_178_702 intron 24.364484 125.699599 24.364484 102.335115 63.3497995 1.801745245 -0.118718 5 67 SH3816 3816 RNaseP RNaseP 46 58 26.014231 110.487432 68.2508315 1.834107947 -0.118743 155 30 SH13703 13703 MT tRNAGlu (and 5' processing site for COB) 5' / tRNA 23.088541 114.584837 23.088541 92.496296 57.7924185 1.761870869 -0.118762 121 20 SH17689 17689 YKL006W_11_431544_432358_INTRON_130_527 intron 26.261776 136.308383 26.261776 111.046607 68.6541915 1.836667057 -0.118768 39 38 SH10295 10295 RUF7 RUF7 86 105 24.954521 105.481771 65.218146 1.814368449 -0.118772 103 78 SH2644 2644 Pro3 3' flank 24.045216 100.159942 62.102579 1.793109636 -0.118778 197 42 SH14572 14572 MT 21S rRNA 21S rRNA3 26.534431 137.193176 26.534431 111.658745 69.096588 1.839456602 -0.118781 16 8 SH16024 16024 YDL189W_4_122079_123590_INTRON_1_99 intron/exon 23.462955 117.926667 23.462955 95.463712 59.4633335 1.774249252 -0.118806 143 9 SH3611 3611 Val1 tRNA 51 65 24.356061 102.298636 63.3273485 1.801591305 -0.118821 113 4 SH1779 1779 Leu8 5' flank 27.66632 114.168989 70.9176545 1.850754363 -0.118831 187 18 SH19909 19909 YAL001C spliced 25.674137 109.351439 67.512788 1.829386043 -0.118895 104 71 SH13999 13999 MT COB intronic 22.415805 108.569186 22.415805 87.153381 54.784593 1.73865844 -0.1189 203 24 SH15255 15255 MT 9S rRNA 5' 23.29334 116.419682 23.29334 94.126342 58.709841 1.768710904 -0.118917 107 24 SH8309 8309 snoRNA cluster4 intergenic 24.908931 129.161875 24.908931 105.252944 65.0809375 1.8134538 -0.11895 16 46 SH13828 13828 MT COB Cytbi2 23.214652 115.726054 23.214652 93.511402 58.363027 1.766137809 -0.118993 211 33 SH1415 1415 Leu1 3' flank 25.755372 109.797518 67.776445 1.831078786 -0.118995 108 34 SH7208 7208 snR64 3' 23.19135 93.329799 58.2605745 1.765374763 -0.119017 93 41 SH16398 16398 YER056C-A_5_270183_269421_INTRON_38_434 5' exon 23.843429 121.386583 23.843429 98.543154 61.1932915 1.786703814 -0.119018 17 63 SH6940 6940 snR58 snR58 61 77 53.140313 154.293332 103.7168225 2.015849203 -0.119033 214 15 SH2090 2090 Lys4 3' flank 24.108493 100.705869 62.407181 1.795234565 -0.119055 58 45 SH13937 13937 MT COB Cytbi3 31.300335 150.571691 31.300335 120.271356 75.7858455 1.8795881 -0.119057 130 12 SH18367 18367 YMR079W_13_424988_426058_INTRON_10_165 intron 21.682374 102.316587 21.682374 81.634213 51.6582935 1.713140055 -0.11907 95 99 SH3374 3374 Thr4 5' flank 23.782028 98.054703 60.9183655 1.784748242 -0.119101 95 15 SH5691 5691 snR34 snR34 376 392 76.62575 190.999563 133.8126565 2.126497193 -0.119119 196 72 SH12218 12218 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 69.26599 247.668903 69.26599 179.402913 124.3344515 2.094591483 -0.119187 194 80 SH1610 1610 Leu5 5' flank 25.712603 109.592719 67.652661 1.830284883 -0.119293 37 55 SH13373 13373 MT COX1 intronic 26.878859 138.342495 26.878859 112.463636 69.6712475 1.843053587 -0.119396 89 33 SH4283 4283 telomerase RNA telomerase 451 465 24.667367 104.001712 64.3345395 1.808444197 -0.119406 210 99 SH11781 11781 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5791 5806 1460.155944 2162.318485 1811.237215 3.257975333 -0.119455 125 102 SH15159 15159 MT tRNA Val 5' 21.367241 99.780281 21.367241 79.41304 50.3901405 1.702345569 -0.119462 26 57 SH19015 19015 YOR182C_15_678792_678190_INTRON_4_414 intron 24.37598 125.832355 24.37598 102.456375 63.4161775 1.802200061 -0.119468 40 44 SH1092 1092 Gly4 5' flank 71.956528 183.666304 127.811416 2.106569646 -0.119482 41 44 SH20823 20823 YKR057W spliced 24.563575 103.456503 64.010039 1.806248092 -0.119499 192 47 SH10677 10677 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 271 287 68.296634 177.894927 123.0957805 2.090243166 -0.119516 162 21 SH16295 16295 YDR450W_4_1359912_1360787_INTRON_48_482 intron 24.063537 123.451469 24.063537 100.387932 62.2257345 1.793970032 -0.119539 69 25 SH12906 12906 MT COX1 COX1ai2 22.343881 107.993631 22.343881 86.64975 54.4968155 1.736371125 -0.119561 174 94 SH12748 12748 MT COX1 COX1ai1 23.827574 121.302941 23.827574 98.475367 61.1514705 1.786406905 -0.119618 54 23 SH4587 4587 U3b (snR17b) 3' 22.589136 88.586135 55.5876355 1.744978201 -0.119623 5 74 SH4291 4291 telomerase RNA telomerase 491 510 23.110275 92.750784 57.9305295 1.762907498 -0.119642 35 85 SH9686 9686 RUF4 RUF4 206 220 1323.435608 1980.583894 1652.009751 3.218012606 -0.119768 53 41 SH20629 20629 YHR123W spliced 26.14463 110.842192 68.493411 1.835648795 -0.119775 68 90 SH21569 21569 copy of SH5384 47.018545 144.86555 95.9420475 1.982008983 -0.119783 22 35 SH12543 12543 MT_ORF6 + ORF7 (hypothetical) ORF6/7 / 3' 22.998271 113.869052 22.998271 91.870781 57.434526 1.759173041 -0.119789 166 7 SH20512 20512 YGR029W spliced 24.649399 103.937216 64.2933075 1.808165768 -0.119789 26 25 SH18390 18390 YMR116C_13_500687_499455_INTRON_538_810 intron 23.987377 122.779502 23.987377 99.792125 61.889751 1.791618735 -0.119794 174 89 SH11961 11961 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6691 6706 565.200121 929.615 747.4075605 2.873557487 -0.119799 116 50 SH5139 5139 snR11 3' 40.795778 135.195812 87.995795 1.944461919 -0.119847 119 2 SH20007 20007 YBR082C spliced 28.059699 115.092144 71.5759215 1.854766948 -0.119863 53 73 SH8070 8070 snoRNA cluster 2 snR61 78.609471 271.806898 78.609471 194.197427 136.403449 2.134825352 -0.119881 17 70 SH10366 10366 RUF7 RUF7 441 457 29.112619 116.928702 73.0206605 1.863445757 -0.119963 75 30 SH15124 15124 MT tRNA Phe 5' 23.649898 119.725902 23.649898 97.076004 60.362951 1.780770463 -0.119968 71 53 SH18857 18857 YNR053C_14_723108_721117_INTRON_811_1341 intron 23.4018 117.491924 23.4018 95.090124 59.245962 1.772658756 -0.11997 147 44 SH2314 2314 Phe2 3' flank 22.597906 88.68839 55.643148 1.745411692 -0.119977 203 92 SH9129 9129 snR7 U5 RNA 5' 25.967786 110.455209 68.2114975 1.833857584 -0.119983 110 54 SH7159 7159 snR63 3' 25.241929 107.122233 66.182081 1.820740419 -0.119994 35 78 SH6026 6026 snR37 snR37 46 65 51.539439 151.879743 101.709591 2.007361908 -0.120007 23 14 SH2959 2959 Ser1 tRNA 26 45 24.999579 105.826589 65.413084 1.815664625 -0.120025 155 20 SH13214 13214 MT COX1 COX1-ai4 24.237277 125.002175 24.237277 101.764898 63.0010875 1.799348046 -0.120029 123 78 SH12883 12883 MT COX1 COX1ai1 24.642824 127.564677 24.642824 103.921853 64.2823385 1.808091667 -0.12003 198 59 SH21718 21718 copy of SH11503 16605.86689 18335.85166 17470.85928 4.242314266 -0.120035 32 60 SH11353 11353 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3651 3667 8492.657251 10169.3662 9331.011727 3.969928735 -0.120072 210 41 SH20693 20693 YIL148W spliced 24.43985 102.845296 63.642573 1.803747729 -0.120081 149 64 SH11442 11442 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4096 4112 20375.68686 21953.10361 21164.39523 4.325605863 -0.120113 14 25 SH7405 7405 snR69 5' 24.996843 105.819869 65.408356 1.815633234 -0.120121 88 35 SH18983 18983 YOR096W_15_505793_506766_INTRON_145_545 intron 24.440609 126.294294 24.440609 102.853685 63.647147 1.803778941 -0.120135 86 28 SH3285 3285 Thr2 tRNA 26 40 24.272428 101.960383 63.1164055 1.800142258 -0.120141 44 12 SH12366 12366 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 22.304482 107.698945 22.304482 86.394463 54.3494725 1.735195333 -0.120146 59 61 SH6606 6606 snR47 3' 23.810859 98.394602 61.1027305 1.786060618 -0.120159 207 10 SH4840 4840 snR8 5' 23.712779 97.602303 60.657541 1.7828848 -0.120165 155 48 SH17032 17032 YGR183C_7_859471_859058_INTRON_4_216 intron 22.704989 111.264565 22.704989 89.559576 56.1322825 1.749212702 -0.120199 7 32 SH9369 9369 RUF1 RUF1 421 438 23.674586 97.298336 60.486461 1.781658175 -0.120204 143 34 SH10911 10911 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1441 1454 5814.408225 7292.8169 6553.612563 3.816480763 -0.120204 163 35 SH20021 20021 YBR089C-A spliced 24.34913 102.375523 63.3623265 1.801831115 -0.120237 67 48 SH4641 4641 snR3 snR3 121 137 25.288269 107.394121 66.341195 1.82178329 -0.12027 116 13 SH17576 17576 YJL191W_10_73786_74610_INTRON_11_418 exon/intron 26.822532 138.213206 26.822532 112.390674 69.606603 1.842650439 -0.120275 185 42 SH5079 5079 snR11 5' - 15 -4 15 23.852573 98.745252 61.2989125 1.78745277 -0.120282 25 92 SH3495 3495 Tyr1 tRNA 16 32 449.01361 760.437437 604.7255235 2.781558299 -0.120309 193 73 SH17815 17815 YKR057W_11_551293_551878_INTRON_25_346 intron 25.518779 133.155513 25.518779 108.636734 67.0777565 1.826578529 -0.120315 3 4 SH21612 21612 copy of SH7093 24.662589 104.051918 64.3572535 1.808597502 -0.120333 102 46 SH15683 15683 YBR191W_2_606228_607098_INTRON_12_399 intron 24.34234 125.6909 24.34234 102.34856 63.34545 1.801715426 -0.120351 104 56 SH998 998 Gly2 5' flank 23.650549 97.121719 60.386134 1.780937226 -0.120374 50 94 SH14077 14077 MT COB Cytbi4 24.638706 127.570246 24.638706 103.93154 64.285123 1.808110479 -0.120418 168 55 SH15918 15918 YDL083C_4_307788_306925_INTRON_25_456 intron 26.533579 137.287805 26.533579 111.754226 69.1439025 1.839753888 -0.120423 165 53 SH3201 3201 Ser5 3' flank 24.370782 102.505895 63.4383385 1.8023518 -0.120427 174 69 SH11629 11629 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5031 5046 4394.577594 5706.06796 5050.322777 3.703319136 -0.120433 148 3 SH1953 1953 Lys2 5' flank 22.608297 88.814604 55.7114505 1.745944466 -0.120449 188 15 SH10740 10740 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 586 604 28.087264 115.188096 71.63768 1.855141513 -0.12045 108 35 SH7297 7297 snR66 5' 70.258953 181.100703 125.679828 2.099265578 -0.120455 75 41 SH16735 16735 YGL076C_7_365994_364333_INTRON_565_1032 intron 37.438801 166.394839 37.438801 129.956038 83.6974195 1.922712068 -0.120459 91 17 SH9782 9782 RUF4 RUF4 686 706 23.79976 98.33794 61.06885 1.785819742 -0.120488 22 10 SH13805 13805 MT COB intronic 23.426944 117.770139 23.426944 95.343195 59.3850695 1.773677269 -0.120509 95 79 SH8012 8012 snoRNA cluster 2 intergenic 22.767767 111.860108 22.767767 90.092341 56.430054 1.751510466 -0.120541 155 57 SH14804 14804 "MT tRNAs (Lys, Arg1, Gly)" intergenic 22.786197 112.028033 22.786197 90.241836 56.5140165 1.752156174 -0.120564 133 80 SH18594 18594 YNL069C_14_494998_493953_INTRON_29_477 exon/intron 23.690882 120.159748 23.690882 97.468866 60.579874 1.782328366 -0.120596 178 73 SH20989 20989 YML067C spliced 25.888538 110.313861 68.1011995 1.833154761 -0.120631 85 9 SH2183 2183 Met2 tRNA 46 60 23.826778 98.571565 61.1991715 1.786745543 -0.120633 152 95 SH10077 10077 RUF6 RUF6 231 247 27.476358 113.86114 70.668749 1.849227403 -0.120644 152 51 SH16581 16581 YER179W_5_548416_549512_INTRON_133_224 3' exon 24.686903 127.895746 24.686903 104.208843 64.447873 1.809208589 -0.120666 160 17 SH3522 3522 Tyr1 3' flank 24.157879 101.279449 62.718664 1.797396799 -0.120681 161 52 SH19494 19494 YPT1 79.621323 195.866866 137.7440945 2.139072988 -0.120706 93 87 SH7672 7672 snoRNA cluster1 snR78 22.505171 109.527874 22.505171 88.022703 55.263937 1.742441821 -0.12071 194 50 SH742 742 Gln4 5' flank 26.27971 111.201462 68.740586 1.83721323 -0.12071 148 5 SH20014 20014 YBR084C-A spliced 26.894574 112.578738 69.736656 1.843461118 -0.120738 168 52 SH11950 11950 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6636 6649 55.327587 157.785664 106.5566255 2.027580459 -0.120745 156 56 SH21337 21337 YPR063C spliced 22.685388 89.454915 56.0701515 1.74873173 -0.120748 158 49 SH14718 14718 MT tRNA cys; tRNA his 5' / tRNA cys 49.247938 196.668306 49.247938 148.420368 98.834153 1.994907045 -0.120809 145 91 SH3810 3810 RNaseP RNaseP 16 33 24.112876 100.925191 62.5190335 1.796012256 -0.120828 209 87 SH17820 17820 YKR057W_11_551293_551878_INTRON_25_346 intron 22.464755 109.180108 22.464755 87.715353 55.090054 1.741073198 -0.120835 84 6 SH14073 14073 MT COB Cytbi4 44.654065 184.941228 44.654065 141.287163 92.970614 1.968345699 -0.120843 118 16 SH10035 10035 RUF6 RUF6 21 40 22.754793 90.018026 56.3864095 1.751174441 -0.120852 80 80 SH4815 4815 snR5 3' 22.266688 86.165518 54.216103 1.734128298 -0.120882 136 95 SH7005 7005 snR60 3' 26.101994 110.813055 68.4575245 1.835421191 -0.120914 104 89 SH17093 17093 YHL001W_8_104270_105084_INTRON_130_527 intron 25.021205 130.038206 25.021205 106.017001 65.519103 1.816367943 -0.120924 213 15 SH1713 1713 Leu6 3' flank 22.098097 84.859101 53.478599 1.728180021 -0.120943 6 69 SH19077 19077 YOR293W_15_867094_867848_INTRON_53_489 intron 24.323379 125.623805 24.323379 102.300426 63.3119025 1.801485364 -0.121006 197 27 SH18311 18311 YML073C_13_124172_123227_INTRON_16_430 intron 26.29395 136.546338 26.29395 111.252388 68.773169 1.837419037 -0.12103 195 8 SH11052 11052 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2146 2162 30319.44328 31163.75774 30741.60051 4.487726475 -0.121052 121 75 SH14659 14659 MT 21S rRNA 21S rRNA4 33.574647 156.492426 33.574647 123.917779 78.746213 1.896229677 -0.121108 29 75 SH10117 10117 RUF6 RUF6 431 450 27.605273 114.174225 70.889749 1.850583439 -0.121129 19 75 SH279 279 Arg4 5' flank - tRNA6 5' flank 6 24.689001 104.258806 64.4739035 1.809383965 -0.12114 88 60 SH9814 9814 RUF4 3' 24.324612 102.317872 63.321242 1.801549425 -0.121142 159 66 SH1434 1434 Leu2 5' flank 24.471155 103.103135 63.787145 1.804733164 -0.121211 50 45 SH16291 16291 YDR450W_4_1359912_1360787_INTRON_48_482 intron 45.346395 186.733204 45.346395 142.386809 93.866602 1.972511097 -0.121244 178 44 SH3109 3109 Ser4 5' flank 23.061227 92.518988 57.7901075 1.761853502 -0.121263 213 44 SH4004 4004 SRP RNA 5' 24.526641 103.402906 63.9647735 1.805940866 -0.121263 60 10 SH8098 8098 snoRNA cluster 3; 5' 25.345928 132.134903 25.345928 107.788975 66.5674515 1.823261931 -0.121279 82 14 SH1830 1830 Leu8 3' flank 24.930291 105.561086 65.2456885 1.814551818 -0.121295 127 28 SH20951 20951 YLR448W spliced 26.94626 112.727214 69.836737 1.84408394 -0.121298 76 89 SH2212 2212 Phe1 5' flank 26.431027 111.576618 69.0038225 1.838873149 -0.121305 201 14 SH19740 19740 Negative Control 30.297968 118.86438 74.581174 1.872629215 -0.121313 76 46 SH8360 8360 snoRNA cluster4 3' 29.563753 146.283477 29.563753 117.719724 73.6417385 1.867124033 -0.121343 86 18 SH17643 17643 YJR145C_10_702761_701720_INTRON_15_270 intron 89.967366 301.33437 89.967366 212.367004 151.167185 2.179457526 -0.121355 158 13 SH277 277 Arg4 5' flank 24.667457 104.161811 64.414634 1.808984544 -0.12136 15 58 SH2100 2100 Lys4 3' flank 24.47853 103.155078 63.816804 1.804935051 -0.121367 147 66 SH2996 2996 Ser2 5' flank 22.679067 89.467236 56.0731515 1.748754966 -0.121417 209 57 SH718 718 Gln3 3' flank 26.268611 111.218642 68.7436265 1.837232439 -0.121424 89 65 SH21501 21501 copy of SH2551 70.694453 181.885399 126.289926 2.101368709 -0.121425 150 62 SH19419 19419 YPR132W_16_794960_795762_INTRON_66_430 intron 48.132767 193.872627 48.132767 146.73986 97.4363135 1.988720844 -0.121445 132 79 SH5488 5488 snR32 snR32 101 117 45.093197 142.016733 93.554965 1.971066841 -0.121522 89 45 SH5903 5903 snR36 5' 23.688556 97.545931 60.6172435 1.782596183 -0.121554 158 63 SH1576 1576 Leu4 tRNA-intron 51 65 24.654039 104.1071 64.3805695 1.808754814 -0.121567 155 44 SH13179 13179 MT COX1 Exon4 22.945881 113.565152 22.945881 91.619271 57.282576 1.75802254 -0.121569 147 49 SH2486 2486 Pro1 5' flank 49.075188 148.214871 98.6450295 1.994075207 -0.121596 207 75 SH11033 11033 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2051 2064 1731.356992 2519.667829 2125.512411 3.327463645 -0.121617 28 31 SH10154 10154 RUF6 RUF6 616 637 22.811005 90.54023 56.6756175 1.753396261 -0.12162 114 36 SH14111 14111 MT COB intronic 22.476704 109.361812 22.476704 87.885108 55.180906 1.741788827 -0.121657 74 45 SH9370 9370 RUF1 RUF1 426 443 21.629703 81.469164 51.5494335 1.712223897 -0.121672 43 22 SH3222 3222 Thr1 5' flank 24.105495 100.953346 62.5294205 1.796084404 -0.121685 78 43 SH16434 16434 YER074W_5_306319_307192_INTRON_4_469 intron 25.562425 133.553197 25.562425 108.990772 67.2765985 1.827864025 -0.121709 90 21 SH8643 8643 snR19 / U1 RNA 3' 22.064054 84.663794 53.363924 1.727247757 -0.121716 104 73 SH3012 3012 Ser2 tRNA 21 38 105.302679 236.710287 171.006483 2.233012575 -0.121754 214 6 SH18482 18482 YMR194W_13_651144_651909_INTRON_17_479 5' exon 80.971896 278.10522 80.971896 198.133324 139.55261 2.144737963 -0.121815 158 32 SH21027 21027 YMR116C spliced 45.711865 142.990746 94.3513055 1.974747914 -0.121816 169 99 SH13121 13121 MT COX1 COX1ai3 23.283426 116.612649 23.283426 94.329223 58.8063245 1.769424036 -0.121829 36 58 SH8349 8349 snoRNA cluster4 snR53/3' 22.988944 113.984195 22.988944 91.995251 57.4920975 1.759608153 -0.121866 199 83 SH17045 17045 YGR214W_7_920570_921783_INTRON_91_545 exon/intron 24.207552 124.962596 24.207552 101.755044 62.981298 1.799211607 -0.121883 23 36 SH1175 1175 His1 3' flank 24.200881 101.721333 62.961107 1.799072355 -0.121904 112 7 SH13502 13502 MT COX1 intronic 23.730812 120.657965 23.730812 97.927153 60.8289825 1.784110552 -0.121951 62 66 SH1010 1010 Gly2 tRNA 41 53 44.042229 140.415135 92.228682 1.964866002 -0.121957 175 5 SH16937 16937 YGR027C_7_534779_534126_INTRON_1_312 intron 25.498498 133.167464 25.498498 108.668966 67.083732 1.826617215 -0.121974 92 102 SH482 482 Asp2 5' flank 29.421749 117.531996 73.4768725 1.866150663 -0.121976 199 19 SH1093 1093 Gly4 5' flank 27.951512 114.984968 71.46824 1.854113087 -0.121977 100 36 SH118 118 Arg1 5' flank 25.701676 109.765281 67.7334785 1.83080338 -0.121983 44 25 SH18011 18011 YLR287C-A_12_713158_712537_INTRON_4_433 intron 27.62087 140.883395 27.62087 114.262525 70.9416975 1.850901576 -0.12202 108 22 SH3446 3446 Trp1 tRNA 61 78 26.843147 112.540869 69.692008 1.843182978 -0.122021 190 76 SH20391 20391 YFL039C spliced 23.498279 96.067925 59.783102 1.776578446 -0.122081 118 50 SH21661 21661 copy of SH9191 21.902245 83.482687 52.692466 1.721748524 -0.122151 43 39 SH4505 4505 U3b (snR17b) U3b 81 98 25.06409 106.349203 65.7066465 1.817609302 -0.122153 45 29 SH16037 16037 YDL191W_4_117665_118518_INTRON_4_494 intron 25.42661 132.724674 25.42661 108.298064 66.862337 1.825181552 -0.122164 132 66 SH19409 19409 YPR098C_16_729525_728944_INTRON_48_143 intron 22.701193 111.416931 22.701193 89.715738 56.2084655 1.749801729 -0.122187 22 25 SH5519 5519 snR32 3' 24.108948 101.034299 62.5716235 1.796377423 -0.122193 186 101 SH15672 15672 YBR191W_2_606228_607098_INTRON_12_399 intron 26.251964 136.480231 26.251964 111.228267 68.7401155 1.837210258 -0.122222 14 21 SH909 909 Glu3 tRNA 56 68 33.764838 124.275539 79.0201885 1.897738061 -0.122242 34 101 SH20618 20618 YHR097C spliced 24.329612 102.432998 63.381305 1.801961177 -0.122244 109 30 SH18722 18722 YNL130C_14_381156_379555_INTRON_30_470 3' exon 26.906543 138.602977 26.906543 112.696434 69.8014885 1.843864684 -0.122261 186 29 SH18628 18628 YNL096C_14_444312_443395_INTRON_145_489 intron 26.321592 136.709358 26.321592 111.387766 68.854679 1.837933458 -0.122269 100 44 SH18195 18195 YML024W_13_225889_226697_INTRON_4_401 intron 24.176588 124.777075 24.176588 101.600487 62.8885375 1.798571495 -0.122287 3 37 SH6306 6306 snR42 snR42 311 325 34.730823 125.738647 80.234735 1.904362423 -0.122306 69 9 SH4826 4826 snR8 5' 24.311741 102.345459 63.3286 1.801599887 -0.122338 85 20 SH852 852 Glu2 tRNA 26 40 193.840658 373.532899 283.6867785 2.452839096 -0.122338 208 57 SH3764 3764 Val4 tRNA 46 58 26.311235 111.369078 68.8401565 1.837841849 -0.122347 184 13 SH10292 10292 RUF7 RUF7 71 86 25.808079 110.23365 68.0208645 1.832642147 -0.122378 98 34 SH12130 12130 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7536 7552 23.939942 99.67277 61.806356 1.791033139 -0.122409 147 38 SH18996 18996 YOR122C_15_552886_552297_INTRON_14_222 intron 23.172559 115.686303 23.172559 93.513744 58.3431515 1.765989885 -0.122485 169 55 SH1734 1734 Leu7 5' flank 22.442316 87.695296 55.068806 1.74090566 -0.122544 74 56 SH17344 17344 YIL018W_9_316766_317930_INTRON_5_404 intron 31.335023 150.863742 31.335023 120.528719 75.931871 1.880424101 -0.122573 62 41 SH13150 13150 MT COX1 intronic 32.504302 153.868756 32.504302 122.364454 77.434378 1.888933814 -0.122616 39 35 SH19583 19583 AEP2/ATP13 0.6 25.180035 107.013103 66.096569 1.820178916 -0.12265 191 90 SH18762 18762 YNL162W_14_331319_332151_INTRON_5_516 intron/exon 26.582261 137.579681 26.582261 111.99742 69.2898405 1.840669562 -0.122683 173 90 SH5004 5004 snR10 snR10 51 63 25.90384 110.469675 68.1867575 1.833700039 -0.122699 183 94 SH15116 15116 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " orf 3 / 3' 24.595759 127.487329 24.595759 103.89157 64.2436645 1.807830305 -0.122738 113 102 SH19575 19575 AEP2/ATP13 0.6 25.448625 108.465939 66.957282 1.825797816 -0.122744 36 40 SH1436 1436 Leu2 5' flank 28.713172 116.449026 72.581099 1.86082354 -0.122749 134 55 SH6308 6308 snR42 snR42 321 337 36.000923 127.827405 81.914164 1.913359003 -0.1228 116 2 SH15898 15898 YDL083C_4_307788_306925_INTRON_25_456 exon/intron 23.361076 117.40276 23.361076 95.041684 59.20138 1.77233183 -0.122802 40 49 SH20430 20430 YGL033W spliced 24.308283 102.364708 63.3364955 1.80165403 -0.122807 167 35 SH9283 9283 RUF1 5' - 9 -9 9 22.619996 89.129652 55.874824 1.747216168 -0.122836 188 12 SH14010 14010 MT COB intronic 26.192474 136.32313 26.192474 111.130656 68.661565 1.836713698 -0.12284 36 12 SH16900 16900 YGL226C-A_7_73156_72747_INTRON_22_170 intron 26.223433 136.424436 26.223433 111.201003 68.712218 1.837033968 -0.122849 16 12 SH6330 6330 snR42 3' 25.737786 110.035521 67.8866535 1.8317844 -0.122855 172 61 SH21155 21155 YNL265C spliced 26.226811 111.211045 68.718928 1.837076376 -0.12289 213 91 SH5252 5252 snR30 snR30 111 126 22.506921 88.237822 55.3723715 1.743293124 -0.122893 112 85 SH8314 8314 snoRNA cluster4 intergenic 21.369695 100.08905 21.369695 79.719355 50.544525 1.70367412 -0.12306 131 28 SH8797 8797 LSR1 / U2 RNA U2 626 643 23.630693 97.235737 60.433215 1.781275699 -0.123123 117 4 SH3301 3301 Thr2 3' flank 23.223689 93.980956 58.6023225 1.767914828 -0.123132 91 21 SH2767 2767 Pro6 5' flank 24.143378 101.416824 62.780101 1.79782201 -0.12315 130 53 SH16153 16153 YDR092W_4_629869_630598_INTRON_31_298 3' exon 26.935228 138.749233 26.935228 112.814005 69.8746165 1.844319437 -0.123158 171 37 SH9921 9921 RUF5-1 RUF5-1 411 429 24.962125 105.886602 65.4243635 1.815739506 -0.123163 37 50 SH14521 14521 MT 21S rRNA 21S rRNA3 32.429688 153.713146 32.429688 122.283458 77.356573 1.888497222 -0.123199 29 60 SH9014 9014 snR17a / U3a U3a 356 371 22.599508 89.000623 55.8000655 1.746634709 -0.1232 168 53 SH6253 6253 snR42 snR42 46 60 45.043383 142.063503 93.553443 1.971059775 -0.123209 40 90 SH21150 21150 YNL246W spliced 23.784217 98.48868 61.1364485 1.786300206 -0.123229 132 22 SH14963 14963 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 23.909356 122.417533 23.909356 99.508177 61.7087665 1.790346865 -0.123241 51 39 SH18379 18379 YMR116C_13_500687_499455_INTRON_538_810 intron 30.533007 148.872726 30.533007 119.339719 74.936363 1.874692611 -0.123253 136 21 SH19807 19807 Negative Control 47.302462 145.577417 96.4399395 1.984256929 -0.12326 17 8 SH18797 18797 YNL301C_14_64561_63569_INTRON_113_544 intron 25.69222 134.516786 25.69222 109.824566 67.758393 1.830963097 -0.123264 92 43 SH17507 17507 YJL136C_10_156971_156248_INTRON_25_484 intron 65.901049 239.406574 65.901049 174.505525 120.203287 2.079916344 -0.123304 95 41 SH7312 7312 snR66 snR66 51 67 238.727694 442.667678 340.697686 2.532369184 -0.123312 17 76 SH9789 9789 RUF4 RUF4 721 742 97.762742 225.009553 161.3861475 2.207866255 -0.123313 36 8 SH17014 17014 YGR148C_7_788173_787307_INTRON_1_392 intron 24.452936 126.630183 24.452936 103.177247 63.8150915 1.804923396 -0.123326 203 99 SH2478 2478 Phe5 3' flank 25.515702 108.880655 67.1981785 1.827357501 -0.123368 14 48 SH6977 6977 snR60 5' 23.138091 93.326257 58.232174 1.765163004 -0.123373 168 66 SH10106 10106 RUF6 RUF6 376 394 22.090199 85.01416 53.5521795 1.728777151 -0.123378 115 97 SH19096 19096 YOR312C_15_901173_900242_INTRON_2_427 intron 25.322696 132.167489 25.322696 107.844793 66.5837445 1.823368215 -0.123416 201 88 SH207 207 Arg2 3' flank 24.431061 103.068778 63.7499195 1.804479641 -0.123427 171 79 SH18485 18485 YMR194W_13_651144_651909_INTRON_17_479 intron 46.860648 190.754373 46.860648 144.893725 95.8771865 1.981715281 -0.12344 111 91 SH7679 7679 snoRNA cluster1 intergenic 56.555948 215.468355 56.555948 159.912407 108.2341775 2.034364421 -0.123449 46 11 SH4549 4549 U3b (snR17b) U3b 301 323 22.439876 87.759632 55.099754 1.74114966 -0.123455 152 7 SH13593 13593 MT ATP8/AAP1 5' 23.00396 114.27555 23.00396 92.27159 57.637775 1.760707207 -0.123473 148 37 SH2164 2164 Met2 5' flank 23.29783 94.605604 58.951717 1.770496459 -0.123499 180 20 SH13345 13345 MT COX1 COX1-ai5a 22.923695 113.54931 22.923695 91.625615 57.274655 1.757962482 -0.123502 152 91 SH1041 1041 Gly3 5' flank 23.427108 95.643628 59.535368 1.774775042 -0.123563 71 57 SH15661 15661 YBR189W_2_604466_605466_INTRON_8_420 intron 23.123603 115.353849 23.123603 93.230246 58.1769245 1.764750759 -0.123566 145 9 SH2060 2060 Lys4 5' flank 24.61672 104.073787 64.3452535 1.808516516 -0.1236 79 56 SH17071 17071 YGR225W_7_945138_946919_INTRON_1184_1276 5' exon 23.987562 123.175101 23.987562 100.187539 62.0875505 1.793004526 -0.123633 176 81 SH679 679 Gln3 5' flank 23.829935 98.902901 61.366418 1.787930774 -0.123651 210 14 SH9779 9779 RUF4 RUF4 671 685 32.950112 123.116396 78.033254 1.892279717 -0.123663 138 81 SH3779 3779 Val4 3' flank 24.26639 102.212292 63.239341 1.800987336 -0.123687 116 35 SH13854 13854 MT COB Cytbi2 22.366883 108.578497 22.366883 87.211614 54.7892485 1.738695344 -0.123754 16 51 SH20869 20869 YLR128W spliced 24.929595 105.765149 65.347372 1.815228127 -0.123801 136 49 SH9256 9256 snR6 / U6 RNA 3' 32.218442 121.99458 77.106511 1.887091052 -0.123869 137 91 SH17725 17725 YKL156W_11_158616_159214_INTRON_4_353 intron 24.587731 127.52945 24.587731 103.941719 64.264725 1.807972653 -0.123879 106 18 SH5849 5849 snR35 snR35 431 448 56.742084 160.245433 108.4937585 2.035404755 -0.123897 95 8 SH268 268 Arg4 5' flank 22.395288 87.448552 54.92192 1.739745711 -0.123899 168 75 SH8495 8495 snR19 / U1 RNA 5' 34.551421 125.563374 80.0573975 1.903401468 -0.123915 194 51 SH14214 14214 MT ATP9 ATP9 24.033937 123.631092 24.033937 100.597155 62.315546 1.794596405 -0.12392 134 86 SH18228 18228 YML026C_13_223828_222987_INTRON_48_448 intron 25.353098 132.405302 25.353098 108.052204 66.702651 1.824143095 -0.123932 182 16 SH18150 18150 YLR406C_12_931752_931062_INTRON_58_406 intron/exon 23.231119 116.351152 23.231119 94.120033 58.675576 1.768457362 -0.123962 163 6 SH19196 19196 YPL081W_16_404945_406039_INTRON_8_508 intron 22.662304 111.23432 22.662304 89.572016 56.11716 1.749095684 -0.123963 103 76 SH19612 19612 RNA14 1.1 57.843133 161.986518 109.9148255 2.041056275 -0.123997 213 93 SH2595 2595 Pro3 5' flank 919.072543 1432.693877 1175.88321 3.070364189 -0.124036 153 27 SH11397 11397 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3871 3888 6019.306487 7536.787593 6778.04704 3.831104579 -0.124082 41 53 SH48 48 Ala1 3' flank 22.621667 89.262962 55.9423145 1.74774043 -0.124122 102 13 SH20545 20545 YGR214W spliced 28.431131 116.074314 72.2527225 1.858854216 -0.124149 152 5 SH4445 4445 telomerase RNA telomerase 1261 1273 3038.954596 4139.97987 3589.467233 3.555029993 -0.12418 95 28 SH10535 10535 RUF8 RUF8 601 618 24.584065 103.947737 64.265901 1.807980601 -0.124193 34 92 SH5609 5609 snR34 5' 24.709094 104.616923 64.6630085 1.810655907 -0.1242 135 14 SH14208 14208 MT ATP9 5' 22.341421 108.394472 22.341421 87.053051 54.697236 1.737965381 -0.124212 4 20 SH13885 13885 MT COB intronic 30.250634 148.209692 30.250634 118.959058 74.604846 1.872767038 -0.124237 129 103 SH16231 16231 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 25.450436 133.05375 25.450436 108.603314 67.026875 1.826248972 -0.124243 30 40 SH18728 18728 YNL147W_14_350937_351380_INTRON_19_138 intron 22.676587 111.390486 22.676587 89.713899 56.195243 1.749699554 -0.12426 18 58 SH9080 9080 snR14 / U4 RNA U4 16 33 48.634019 147.739986 98.1870025 1.992054002 -0.124291 120 97 SH20648 20648 YIL004C spliced 25.594201 109.387005 67.490603 1.829243308 -0.124333 66 42 SH21729 21729 copy of SH12129 24.981427 106.087555 65.534491 1.816469931 -0.124335 7 21 SH385 385 Asn1 6-20 6 20 25.942525 110.654165 68.298345 1.83441018 -0.124348 55 98 SH12684 12684 MT tRNA Trp 3' 24.347229 126.048406 24.347229 102.701177 63.524203 1.802939225 -0.124411 165 65 SH21755 21755 copy of SH13180 36.466179 128.679689 82.572934 1.916837716 -0.124478 94 70 SH15927 15927 YDL108W_4_267697_268698_INTRON_29_109 intron 23.149816 115.67626 23.149816 93.526444 58.33813 1.765952504 -0.124494 118 46 SH17870 17870 YLL050C_12_40413_39803_INTRON_15_193 intron 67.689254 244.107998 67.689254 177.418744 122.553999 2.088327487 -0.124504 113 101 SH12405 12405 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.715725 120.78433 23.715725 98.068605 60.892165 1.784561416 -0.124573 171 23 SH18665 18665 YNL112W_14_413636_416278_INTRON_1274_2275 intron 24.945749 129.861986 24.945749 105.916237 65.430993 1.815783511 -0.124577 46 3 SH5720 5720 snR34 snR34 521 539 28.877845 116.816179 72.847012 1.862411743 -0.124587 69 4 SH19127 19127 YPL075W_16_412249_415357_INTRON_9_759 intron 25.063372 130.617836 25.063372 106.554464 65.808918 1.81828475 -0.124656 88 8 SH17271 17271 YHR123W_8_354817_356083_INTRON_51_141 intron 21.863485 104.27462 21.863485 83.411135 52.63731 1.721293687 -0.124657 133 60 SH4540 4540 U3b (snR17b) U3b 256 274 23.552792 96.767566 60.160179 1.77930912 -0.124727 195 82 SH14232 14232 MT ATP9 3' 30.026742 147.666347 30.026742 118.639605 74.3331735 1.871182674 -0.124745 3 14 SH21621 21621 copy of SH7516 29.205288 117.346977 73.2761325 1.864962539 -0.124752 135 4 SH2233 2233 Phe1 tRNA-intron/exon 41 59 23.325975 94.955589 59.140782 1.771887063 -0.124791 63 76 SH16401 16401 YER056C-A_5_270183_269421_INTRON_38_434 intron 27.221125 139.769477 27.221125 113.548352 70.3847385 1.847478501 -0.124808 106 40 SH14519 14519 MT 21S rRNA 21S rRNA3 23.830447 121.858168 23.830447 99.027721 61.429084 1.788374039 -0.124839 29 104 SH12918 12918 MT COX1 COX1ai2 28.502914 143.734072 28.502914 116.231158 72.367036 1.859540785 -0.124881 68 74 SH12697 12697 MT ORF 8 (hypothetical) ORF8 23.978041 123.216678 23.978041 100.238637 62.108339 1.793149915 -0.124889 210 50 SH6091 6091 snR37 371-386 + 3' 371 24.075659 101.041028 62.5583435 1.79628524 -0.124898 181 98 SH2873 2873 Pro7 3' flank 26.731394 112.463988 69.597691 1.842594832 -0.124912 50 19 SH19945 19945 YBL040C spliced 22.794161 90.717465 56.755813 1.754010349 -0.124915 83 65 SH7108 7108 snR63 snR63 46 65 23.519225 96.516851 60.018038 1.778281794 -0.124923 115 67 SH13836 13836 MT COB Cytbi2 23.222605 116.37075 23.222605 94.148145 58.685375 1.768529884 -0.124953 201 78 SH15576 15576 YBR084C-A_2_415219_414144_INTRON_3_508 intron 105.588933 342.204507 105.588933 237.615574 171.6022535 2.234522987 -0.125 10 13 SH6964 6964 snR60 5' 25.264294 107.664871 66.4645825 1.822590281 -0.125007 131 104 SH5367 5367 snR31 5' 36.605993 128.937216 82.7716045 1.917881374 -0.125015 54 78 SH7993 7993 snoRNA cluster 2 intergenic 26.552438 137.622133 26.552438 112.069695 69.3110665 1.840802581 -0.125022 138 103 SH8435 8435 snoRNA cluster 5 intergenic/snR128 21.346151 100.058719 21.346151 79.712568 50.5293595 1.703543793 -0.125064 137 29 SH14624 14624 MT 21S rRNA Sce1 endonuc 22.660827 111.324584 22.660827 89.663757 56.162292 1.749444823 -0.125067 206 94 SH20923 20923 YLR367W spliced 26.087066 111.02497 68.556018 1.836045584 -0.125086 50 2 SH19251 19251 YPL129W_16_305297_306136_INTRON_10_114 intron 23.678419 120.496577 23.678419 97.818158 60.7482885 1.783534047 -0.125089 165 5 SH4296 4296 telomerase RNA telomerase 516 530 22.588275 89.09134 55.8398075 1.746943912 -0.125133 156 97 SH14375 14375 MT ORF9 and ORF10 (hypothetical) ORF10 22.970866 114.136444 22.970866 92.165578 57.568222 1.760182816 -0.125152 128 81 SH14589 14589 MT 21S rRNA Sce1 endonuc 24.585172 127.619806 24.585172 104.034634 64.309903 1.808277855 -0.125186 183 74 SH20015 20015 YBR084C-A spliced 25.739649 110.242804 67.9912265 1.832452876 -0.125194 50 49 SH1781 1781 Leu8 5' flank 27.724258 114.683064 71.203661 1.852502324 -0.125199 157 76 SH10198 10198 RUF6 RUF6 836 853 24.838245 105.394246 65.1162455 1.813689352 -0.125237 110 84 SH11350 11350 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3636 3651 281.77398 509.778039 395.7760095 2.597449465 -0.125277 78 7 SH620 620 Gln1 3' flank 68.262781 178.416494 123.3396375 2.091102668 -0.1253 12 24 SH15873 15873 YDL082W_4_308423_309387_INTRON_5_369 5' exon 61.893545 229.291145 61.893545 168.3976 115.1455725 2.061247243 -0.12531 177 22 SH9987 9987 RUF5-1 RUF5-1 741 760 24.642574 104.352026 64.4973 1.809541534 -0.125312 97 96 SH8357 8357 snoRNA cluster4 3' 21.827139 104.030452 21.827139 83.203313 52.515226 1.720285239 -0.125336 100 61 SH5311 5311 snR30 snR30 406 422 23.071932 92.991162 58.031547 1.763664148 -0.125338 39 13 SH16455 16455 YER074W-A_0_5_307649_INTRON_95_196 intron 22.217553 107.403512 22.217553 86.185959 54.201756 1.734013357 -0.125371 176 4 SH16624 16624 YFL039C_6_54695_53260_INTRON_11_318 intron 62.671017 231.309716 62.671017 169.638699 116.154858 2.065037378 -0.125373 160 77 SH14945 14945 MT tRNA Met 5' 24.702341 128.384582 24.702341 104.682241 64.692291 1.810852531 -0.125436 24 34 SH21846 21846 copy of SH17381 34.590948 125.717611 80.1542795 1.903926715 -0.12546 135 32 SH1209 1209 Ile1 tRNA 6 18 25.050307 106.557861 65.804084 1.818252848 -0.125537 106 59 SH11598 11598 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4876 4893 29827.60094 30808.95498 30318.27796 4.48170453 -0.125566 17 4 SH19603 19603 AEP2/ATP13 2.1 23.283069 94.689467 58.986268 1.77075092 -0.125573 129 17 SH21186 21186 YOL047C spliced 25.494397 108.95495 67.2246735 1.827528702 -0.125583 154 7 SH16136 16136 YDR092W_4_629869_630598_INTRON_31_298 5' exon 22.967202 114.145155 22.967202 92.177953 57.5725775 1.760215673 -0.125588 13 44 SH15040 15040 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.372006 132.669209 25.372006 108.297203 66.8346045 1.825001382 -0.125617 15 34 SH4443 4443 telomerase RNA telomerase 1251 1267 49.824042 149.683632 99.753837 1.99892961 -0.125627 42 87 SH19767 19767 Negative Control 23.81419 98.975593 61.3948915 1.788132236 -0.12563 146 42 SH21546 21546 copy of SH4255 22.687364 89.929954 56.308659 1.750575185 -0.125642 180 19 SH3005 3005 Ser2 5' flank - tRNA5 5 25.026337 106.440502 65.7334195 1.817786225 -0.125674 188 96 SH10615 10615 RUF8 3' 26.174382 111.257111 68.7157465 1.837056269 -0.125674 7 4 SH7097 7097 snR63 5' - 10 -9 10 22.570695 89.002641 55.786668 1.746530423 -0.125683 41 16 SH6529 6529 snR46 snR46 136 156 24.266815 102.379562 63.3231885 1.801562775 -0.125742 214 73 SH14082 14082 MT COB Cytbi4 24.027814 123.763856 24.027814 100.736042 62.381928 1.795058793 -0.125752 57 95 SH2930 2930 Pro8 3' flank 33.534886 124.140247 78.8375665 1.89673321 -0.125771 145 6 SH4295 4295 telomerase RNA telomerase 511 527 24.346003 102.805235 63.575619 1.803290597 -0.125782 134 81 SH12589 12589 MT_15S MT_15S 27.869671 141.911757 27.869671 115.042086 71.4558785 1.854037963 -0.125849 94 78 SH6877 6877 snR56 snR56 16 35 83.456168 202.565557 143.0108625 2.155369026 -0.125896 76 3 SH10312 10312 RUF7 RUF7 171 193 22.59106 89.186064 55.888562 1.747322935 -0.12591 197 4 SH12334 12334 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.429742 137.281636 26.429742 111.851894 69.140818 1.839734513 -0.125996 127 23 SH8226 8226 snoRNA cluster 3; snR51/3' 22.056721 106.043734 22.056721 84.987013 53.521867 1.728531254 -0.125999 144 84 SH15249 15249 MT tRNA fMet tRNA / 3' 22.618963 111.036252 22.618963 89.417289 56.018126 1.748328576 -0.126004 176 37 SH14503 14503 MT 21S rRNA 21S rRNA3 35.949846 162.903514 35.949846 127.953668 81.951757 1.913558269 -0.126037 111 51 SH20358 20358 YER117W spliced 25.092809 106.828473 65.960641 1.819284867 -0.126039 120 39 SH14008 14008 MT COB intronic 23.969183 123.260555 23.969183 100.291372 62.1302775 1.793303293 -0.126108 119 53 SH19540 19540 CBP1 1.2 31.063864 120.321272 75.692568 1.87905324 -0.126111 195 39 SH16799 16799 YGL137W_7_249872_252741_INTRON_19_218 intron 26.374721 137.109844 26.374721 111.735123 69.054922 1.839194639 -0.126115 20 31 SH5049 5049 snR10 3' 24.459865 103.44036 63.9501125 1.805841313 -0.126116 157 97 SH1785 1785 Leu8 5' flank 27.018505 113.176916 70.0977105 1.845703833 -0.126117 198 74 SH16575 16575 YER179W_5_548416_549512_INTRON_133_224 exon/intron 23.686221 120.675762 23.686221 97.989541 60.837881 1.784174079 -0.126165 199 100 SH15431 15431 YBL072C_2_89435_88518_INTRON_1_308 intron 25.126195 131.14554 25.126195 107.019345 66.07277 1.820022514 -0.126172 105 6 SH12696 12696 MT ORF 8 ORF8 22.648556 111.318634 22.648556 89.670078 56.159317 1.749421817 -0.126179 65 15 SH5704 5704 snR34 snR34 441 460 23.742236 98.44732 61.094778 1.786004091 -0.126195 45 2 SH5136 5136 snR11 3' 25.679631 110.010757 67.845194 1.831519089 -0.126212 122 33 SH15381 15381 YBL027W_2_168385_169338_INTRON_3_386 intron 32.327384 153.634344 32.327384 122.30696 77.317172 1.888275961 -0.126252 125 48 SH1614 1614 Leu5 5' flank 25.954795 110.794156 68.3744755 1.834894008 -0.126256 197 30 SH9958 9958 RUF5-1 RUF5-1 596 610 42.080181 137.621569 89.850875 1.953522311 -0.126262 166 5 SH21826 21826 copy of SH16121 24.659789 104.522361 64.591075 1.810172513 -0.126265 67 4 SH16386 16386 YER007C-A_5_166884_166236_INTRON_12_114 3' exon 23.644364 120.306189 23.644364 97.661825 60.6530945 1.782852963 -0.126279 157 53 SH7402 7402 snR69 5' 23.490369 96.422095 59.956232 1.777834331 -0.126312 41 69 SH12067 12067 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7221 7239 31.626985 121.211616 76.4193005 1.883203058 -0.126316 76 13 SH13976 13976 MT COB cytbi3/intron 23.526153 119.237304 23.526153 96.711151 60.118652 1.779009234 -0.126321 104 27 SH1484 1484 Leu2 3' flank 23.24932 94.493987 58.8716535 1.769906234 -0.126331 76 32 SH15820 15820 YDL064W_4_337486_338069_INTRON_39_148 exon/intron 160.40777 482.251013 160.40777 322.843243 241.6255065 2.383142777 -0.126338 38 56 SH14347 14347 MT VAR1 includes 5’ processing site 3' 35.436605 161.581423 35.436605 127.144818 81.2907115 1.910040925 -0.126345 117 92 SH17594 17594 YJL191W_10_73786_74610_INTRON_11_418 intron 61.55856 228.518053 61.55856 167.959493 114.7590265 2.059786855 -0.126351 107 96 SH19743 19743 Negative Control 24.557406 103.984187 64.2707965 1.808013682 -0.126388 41 35 SH13580 13580 MT COX1 Exon 6 25.273124 132.103608 25.273124 107.830484 66.551804 1.823159832 -0.126403 151 47 SH8543 8543 snR19 / U1 RNA U1 211 228 26.870306 112.864079 69.8671925 1.844273292 -0.126411 27 79 SH19343 19343 YPL249C-A_16_76239_75699_INTRON_17_254 5' exon 158.450254 477.270646 158.450254 319.820392 239.135323 2.378643731 -0.126441 23 56 SH8185 8185 snoRNA cluster 3; snR70 38.444044 169.375645 38.444044 131.931601 85.1878225 1.930377517 -0.126468 137 68 SH8222 8222 snoRNA cluster 3; snR51 23.456281 118.626257 23.456281 96.169976 59.8131285 1.776796519 -0.126534 11 47 SH15833 15833 YDL075W_4_322225_322987_INTRON_58_478 intron 23.362849 117.783444 23.362849 95.420595 59.391722 1.773725917 -0.126535 135 85 SH18132 18132 YLR406C_12_931752_931062_INTRON_58_406 5' exon 25.579941 134.082816 25.579941 109.502875 67.541408 1.82957011 -0.12658 208 31 SH1060 1060 Gly3 tRNA 36 48 35.642696 127.493696 81.568196 1.911520857 -0.126584 48 75 SH10152 10152 RUF6 RUF6 606 628 21.597303 81.639879 51.618591 1.712806146 -0.126586 33 25 SH14156 14156 MT COB intronic 23.523009 119.237102 23.523009 96.714093 60.118551 1.779008505 -0.126606 197 103 SH17057 17057 YGR214W_7_920570_921783_INTRON_91_545 intron 23.168637 116.048235 23.168637 93.879598 58.5241175 1.767334874 -0.126614 101 56 SH8599 8599 snR19 / U1 RNA U1 491 508 25.593088 109.579129 67.5861085 1.829857441 -0.12664 198 90 SH19143 19143 YPL075W_16_412249_415357_INTRON_9_759 intron 25.084999 130.92218 25.084999 106.837181 65.96109 1.819287824 -0.126644 210 78 SH10115 10115 RUF6 RUF6 421 442 132.182343 279.206195 205.694269 2.313222192 -0.126696 65 89 SH1255 1255 Ile2 5' flank 23.940024 100.116947 62.0284855 1.792591177 -0.126737 3 41 SH1794 1794 Leu8 5' flank - tRNA11 11 1802.987147 2620.524383 2211.755765 3.344737168 -0.12674 106 95 SH12278 12278 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.68495 128.383514 24.68495 104.698564 64.691757 1.810848947 -0.126769 187 73 SH2477 2477 Phe5 3' flank 23.497488 96.529876 60.013682 1.778250273 -0.126822 28 53 SH7542 7542 snR79 snR79 51 68 24.715146 104.86506 64.790103 1.81150867 -0.126825 32 34 SH19778 19778 Negative Control 28.102223 115.613691 71.857957 1.856474866 -0.126864 134 60 SH6730 6730 snR49 3' 21.766806 82.892233 52.3295195 1.718746747 -0.126866 135 41 SH5362 5362 snR30 3' 25.597034 109.621186 67.60911 1.830005219 -0.12688 171 96 SH8353 8353 snoRNA cluster4 3' 60.777782 226.572408 60.777782 166.794626 113.786204 2.056089609 -0.126886 104 79 SH1218 1218 Ile1 tRNA 51 63 23.964785 100.336765 62.150775 1.793446549 -0.126899 22 69 SH20024 20024 YBR119W spliced 26.748181 112.620926 69.6845535 1.843136522 -0.12691 201 12 SH18215 18215 YML025C_13_225365_224406_INTRON_28_126 intron 23.941851 123.092915 23.941851 100.151064 62.0464575 1.792716991 -0.126923 192 12 SH17614 17614 YJR021C_10_469271_468247_INTRON_317_396 intron 30.714458 149.546463 30.714458 119.832005 75.2732315 1.876640561 -0.126926 188 35 SH5478 5478 snR32 snR32 51 67 57.813641 162.197252 110.0054465 2.041414188 -0.12693 111 27 SH10544 10544 RUF8 RUF8 646 666 20.979138 77.260009 49.1195735 1.691254587 -0.126941 68 29 SH987 987 Gly2 5' flank 24.26059 102.447662 63.354126 1.801774904 -0.127003 30 27 SH8633 8633 snR19 / U1 RNA 661-668 + 3' 661 22.409574 87.848171 55.1288725 1.74137911 -0.127026 18 46 SH19738 19738 Negative Control 27.550559 114.412239 70.981399 1.851144555 -0.127039 185 19 SH13447 13447 MT COX1 intronic 23.38506 118.03471 23.38506 95.64965 59.517355 1.774643623 -0.127056 154 71 SH3964 3964 RNase MRP RNaseMRP 236 253 22.670975 89.936407 56.303691 1.750536866 -0.127105 205 43 SH447 447 Asp1 tRNA 56 68 26.835319 112.828031 69.831675 1.844052459 -0.127114 121 13 SH3149 3149 Ser4 3' flank 26.697806 112.522431 69.6101185 1.842672373 -0.12715 112 100 SH13590 13590 MT COX1 3' 22.083717 106.387999 22.083717 85.304282 53.6939995 1.729925754 -0.127201 29 53 SH5044 5044 snR10 3' 24.718165 104.920294 64.8192295 1.811703864 -0.127299 113 61 SH2552 2552 Pro2 5' flank - tRNA10 10 220.869909 416.251627 318.560768 2.50319229 -0.1273 68 60 SH9667 9667 RUF4 RUF4 111 127 24.549182 104.020735 64.2849585 1.808109368 -0.127375 60 11 SH21252 21252 YPL075W spliced 23.137395 93.709787 58.423591 1.766588247 -0.127428 129 98 SH8308 8308 snoRNA cluster4 intergenic 23.660765 120.574569 23.660765 97.913804 60.7872845 1.783812743 -0.127466 197 33 SH21242 21242 YOR312C spliced 26.537361 112.181665 69.359513 1.841106035 -0.127472 47 74 SH1760 1760 Leu7 3' flank 21.755651 82.863454 52.3095525 1.718581005 -0.127493 173 6 SH9755 9755 RUF4 RUF4 551 563 25.156716 107.295194 66.225955 1.82102823 -0.127497 61 48 SH20513 20513 YGR029W spliced 25.108443 107.035313 66.071878 1.820016651 -0.127501 115 62 SH9697 9697 RUF4 RUF4 261 278 23.843707 99.409367 61.626537 1.789767764 -0.127526 78 103 SH10644 10644 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 106 128 21.620132 81.883325 51.7517285 1.71392486 -0.127536 148 61 SH20572 20572 YHR012W spliced 25.025182 106.591612 65.808397 1.818281312 -0.127557 172 15 SH15545 15545 YBR078W_2_393082_394818_INTRON_59_388 intron 22.144183 106.95652 22.144183 85.812337 53.97826 1.732218881 -0.127601 145 15 SH19764 19764 Negative Control 24.801538 105.394357 65.0979475 1.813567296 -0.127621 172 36 SH19932 19932 YBL026W spliced 59.831413 165.404152 112.6177825 2.051606972 -0.127642 22 54 SH12104 12104 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7406 7422 44.890747 142.156635 93.523691 1.970921638 -0.127701 105 71 SH5541 5541 snR33 5' - 12 -9 12 24.287074 102.648284 63.467679 1.802552617 -0.127739 129 88 SH13822 13822 MT COB Cytbi2 22.569566 110.754901 22.569566 89.185335 55.8774505 1.747236582 -0.127739 176 56 SH9272 9272 RUF1 5' 22.538311 88.939032 55.7386715 1.746156613 -0.12777 89 103 SH14974 14974 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 23.595212 120.008535 23.595212 97.413323 60.5042675 1.781786007 -0.127772 103 33 SH1668 1668 Leu6 5' flank 23.507826 96.707878 60.107852 1.778931208 -0.127777 34 23 SH15618 15618 YBR181C_2_592732_591670_INTRON_7_358 intron 24.463627 127.059618 24.463627 103.595991 64.029809 1.806382206 -0.127784 72 3 SH14457 14457 MT 21S rRNA 21S rRNA3 22.61161 111.143815 22.61161 89.532205 56.0719075 1.748745331 -0.127859 11 32 SH664 664 Gln2 3' flank 25.350541 108.372078 66.8613095 1.825174878 -0.127862 48 17 SH13672 13672 MT ATP6 ATP6 / 3' 26.66291 138.150218 26.66291 112.487308 69.575109 1.842453895 -0.127871 144 16 SH15786 15786 YDL029W_4_399336_400634_INTRON_23_145 intron 24.80788 129.260276 24.80788 105.452396 65.130138 1.813781998 -0.127911 102 6 SH11851 11851 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6141 6156 38.442782 132.028184 85.235483 1.930620426 -0.127936 110 10 SH4880 4880 snR8 181-190 + 3' 181 22.887718 91.761029 57.3243735 1.758339317 -0.127944 142 80 SH3223 3223 Thr1 5' flank 22.677385 90.0695 56.3734425 1.751074556 -0.127973 177 23 SH3776 3776 Val4 3' flank 24.683237 104.789843 64.73654 1.811149484 -0.127992 153 46 SH4590 4590 U3b (snR17b) 3' 22.86733 91.603315 57.2353225 1.757664134 -0.12802 8 70 SH7912 7912 snoRNA cluster1 intergenic/snR72 22.622608 111.258276 22.622608 89.635668 56.129138 1.749188373 -0.128024 15 72 SH19187 19187 YPL079W_16_406631_407534_INTRON_12_432 intron 29.32588 146.050937 29.32588 117.725057 73.5254685 1.8664378 -0.128038 74 72 SH1572 1572 Leu4 tRNA-exon/intron 31 50 23.896898 99.897916 61.897407 1.791672456 -0.128047 165 97 SH5629 5629 snR34 snR34 66 80 25.503678 109.217692 67.360685 1.828406495 -0.128066 57 88 SH5142 5142 snR11 3' 25.598867 109.738911 67.668889 1.830389046 -0.128133 89 13 SH1596 1596 Leu4 3' flank 23.732939 98.57524 61.1540895 1.786425505 -0.128209 33 15 SH10734 10734 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 556 574 23.884039 99.816134 61.8500865 1.791340311 -0.128277 91 65 SH21862 21862 copy of SH18012 23.621668 97.678524 60.650096 1.782831493 -0.128281 110 44 SH2091 2091 Lys4 3' flank 25.492918 109.179907 67.3364125 1.828249975 -0.128305 168 76 SH17717 17717 YKL081W_11_282533_284097_INTRON_206_531 intron 24.400897 126.704443 24.400897 103.303546 63.8522215 1.805176012 -0.128317 55 23 SH6864 6864 snR56 5' 36.899457 129.621932 83.2606945 1.920440029 -0.128372 33 29 SH1546 1546 Leu4 5' flank 22.877615 91.721096 57.2993555 1.758149737 -0.12838 140 34 SH6799 6799 snR52 5' 22.749601 90.68828 56.7189405 1.75372811 -0.128383 61 24 SH1038 1038 Gly3 5' flank 23.165316 94.026072 58.595694 1.767865702 -0.128408 116 32 SH15164 15164 MT tRNA Val tRNA 42.450904 179.816113 42.450904 138.365209 90.4080565 1.956207133 -0.128427 34 73 SH9503 9503 RUF3 5' 25.565829 109.586096 67.5759625 1.82979224 -0.128437 89 95 SH1631 1631 Leu5 tRNA 21 35 25.797307 110.564351 68.180829 1.833662277 -0.12844 43 9 SH4575 4575 U3b (snR17b) U3b 431 443 39.255881 133.36598 86.3109305 1.936065799 -0.128483 115 53 SH3587 3587 Val1 5' flank 24.278879 102.667283 63.473081 1.80258958 -0.128518 187 88 SH3968 3968 RNase MRP RNaseMRP 256 273 26.825643 112.890813 69.858228 1.844217565 -0.128523 149 27 SH14646 14646 MT 21S rRNA intronic 23.15257 116.089428 23.15257 93.936858 58.544714 1.767487689 -0.128534 24 79 SH9848 9848 RUF5-1 RUF5-1 46 65 24.879066 105.902552 65.390809 1.81551671 -0.128724 30 51 SH5374 5374 snR31 5' 28.811628 116.944391 72.8780095 1.862596502 -0.128732 166 56 SH4336 4336 telomerase RNA telomerase 716 735 22.417679 88.069926 55.2438025 1.742283564 -0.128738 92 87 SH17194 17194 YHR021C_8_148660_147862_INTRON_4_553 intron 24.347588 126.401215 24.347588 103.053627 63.7006075 1.804143574 -0.128753 83 13 SH16261 16261 YDR424C_4_1319830_1319376_INTRON_26_121 intron 21.890877 104.851851 21.890877 83.960974 52.9259255 1.723668461 -0.128797 110 2 SH12030 12030 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS/3'flank 7036 7056 22.127094 85.78605 53.956572 1.73204435 -0.128798 149 36 SH16722 16722 YGL033W_7_435621_436347_INTRON_56_125 5' exon 25.501841 133.773342 25.501841 109.271501 67.386671 1.828574002 -0.12881 115 44 SH19228 19228 YPL090C_16_378390_377286_INTRON_7_400 intron 187.378726 551.473747 187.378726 365.095021 276.2368735 2.44128165 -0.128829 136 29 SH20730 20730 YJL189W spliced 41.014491 136.156597 88.585544 1.947362857 -0.128842 10 22 SH4116 4116 SRP RNA SRP RNA 471 490 23.605088 97.600813 60.6029505 1.782493769 -0.128847 139 2 SH7778 7778 snoRNA cluster1 intergenic 89.87089 302.010406 89.87089 213.139516 151.505203 2.180427548 -0.128854 17 94 SH10305 10305 RUF7 RUF7 136 151 25.481129 109.163266 67.3221975 1.828158284 -0.128856 79 26 SH6427 6427 snR45 5' 23.90277 100.029743 61.9662565 1.79215526 -0.128863 151 81 SH13311 13311 MT COX1 COX1-ai5a 23.38044 118.171943 23.38044 95.791503 59.5859715 1.775144025 -0.128878 87 23 SH15582 15582 YBR084C-A_2_415219_414144_INTRON_3_508 intron 24.043452 124.238808 24.043452 101.195356 62.619404 1.79670893 -0.128943 76 35 SH19709 19709 Negative Control 39.606407 133.953895 86.780151 1.938420401 -0.128945 160 75 SH21896 21896 copy of SH19001 24.59361 104.387514 64.490562 1.809496162 -0.128949 4 80 SH2939 2939 Ser1 5' flank 23.378249 95.784106 59.5811775 1.775109082 -0.128982 43 7 SH16519 16519 YER131W_5_423587_424307_INTRON_1_361 5' exon 22.885688 113.7312 22.885688 91.845512 57.3656 1.75865154 -0.128995 110 89 SH21233 21233 YOR293W spliced 23.077421 93.3899 58.2336605 1.76517409 -0.129054 30 38 SH1382 1382 Leu1 5' flank - tRNA2 2 24.875249 105.909528 65.3923885 1.815527201 -0.129055 75 93 SH17097 17097 YHL001W_8_104270_105084_INTRON_130_527 intron 26.436109 137.487479 26.436109 112.05137 69.2437395 1.840380514 -0.129111 91 23 SH1375 1375 Leu1 5' flank 24.380254 103.258819 63.8195365 1.804953646 -0.129129 110 40 SH18457 18457 YMR143W_13_551927_552902_INTRON_25_568 intron 35.116377 160.92381 35.116377 126.807433 80.961905 1.908280718 -0.129215 109 94 SH5860 5860 snR35 snR35 486 501 24.549245 104.173282 64.3612635 1.808624561 -0.129239 74 63 SH5838 5838 snR35 snR35 376 390 72.412598 185.386071 128.8993345 2.110250675 -0.129243 192 25 SH76 76 Ala2 16-28 16 28 23.927905 100.275084 62.1014945 1.793102052 -0.129243 177 60 SH9965 9965 RUF5-1 RUF5-1 631 648 28.355876 116.24014 72.298008 1.859126332 -0.129267 169 59 SH7 7 Ala1 5' flank 24.361714 103.171701 63.7667075 1.804593993 -0.129278 100 48 SH574 574 Gln1 5' flank 22.309102 87.261125 54.7851135 1.738662566 -0.129288 27 88 SH9264 9264 snR6 / U6 RNA 3' 23.244335 94.742534 58.9934345 1.770803681 -0.129301 60 9 SH14842 14842 MT tRNA Asp tRNA Asp 25.41191 133.240214 25.41191 108.828304 67.120107 1.82685264 -0.129321 52 36 SH14782 14782 MT ORF11; tRNA Leu; tRNA Gln tRNA / 3' 22.218198 107.768711 22.218198 86.550513 54.3843555 1.735473986 -0.12935 149 40 SH2134 2134 Met1 tRNA 56 68 29.441329 117.984671 73.713 1.867544087 -0.129384 136 11 SH610 610 Gln1 3' flank 22.230536 86.650882 54.440709 1.735923773 -0.129387 158 18 SH17684 17684 YKL006W_11_431544_432358_INTRON_130_527 intron 24.15428 125.227126 24.15428 102.072846 63.113563 1.800122698 -0.129406 62 49 SH14811 14811 "MT tRNAs (Lys, Arg1, Gly)" intergenic / tRNA Arg1 23.122111 115.900889 23.122111 93.778778 58.4504445 1.766787818 -0.129408 213 69 SH495 495 Asp2 tRNA 36 48 33.551656 124.3889 78.970278 1.897463667 -0.129439 76 61 SH12675 12675 MT tRNA Trp 5' 23.280117 117.322487 23.280117 95.04237 59.1612435 1.772037294 -0.129442 125 58 SH16009 16009 YDL137W_4_216158_217074_INTRON_1_332 intron 31.055181 150.561301 31.055181 120.50612 75.7806505 1.879558329 -0.129515 13 8 SH3128 3128 Ser4 tRNA 46 63 25.268366 108.071513 66.6699395 1.823930061 -0.129552 10 32 SH9894 9894 RUF5-1 RUF5-1 276 291 27.660572 114.810541 71.2355565 1.852696821 -0.129595 63 59 SH9105 9105 snR14 / U4 RNA U4 141 158 23.347412 95.597732 59.472572 1.774316721 -0.129606 72 85 SH9797 9797 RUF4 RUF4 761 778 24.53633 104.139858 64.338094 1.808468191 -0.129678 168 64 SH15007 15007 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 22.142313 107.127693 22.142313 85.98538 54.0638465 1.732906941 -0.12969 156 86 SH16767 16767 YGL103W_7_310965_311925_INTRON_50_560 5' exon 253.74884 720.471286 253.74884 467.722446 360.735643 2.557189056 -0.129697 89 21 SH14341 14341 MT VAR1 includes 5’ processing site VAR1 24.017509 124.080916 24.017509 101.063407 62.540458 1.796161057 -0.129734 197 12 SH16787 16787 YGL103W_7_310965_311925_INTRON_50_560 intron 26.311814 137.120016 26.311814 111.808202 69.060008 1.839226624 -0.129738 203 78 SH18015 18015 YLR287C-A_12_713158_712537_INTRON_4_433 3' exon 23.805335 122.127247 23.805335 99.321912 61.5636235 1.789324174 -0.129745 104 48 SH20183 20183 YDL191W spliced 28.350734 116.25956 72.305147 1.859169213 -0.129761 171 39 SH20679 20679 YIL106W spliced 29.108064 117.47702 73.292542 1.865059785 -0.129767 162 91 SH13938 13938 MT COB Cytbi3 22.483551 110.177665 22.483551 88.694114 55.5888325 1.744987553 -0.129828 28 50 SH342 342 Arg5 tRNA 46 60 22.719744 90.588581 56.6541625 1.753231824 -0.129865 52 31 SH18540 18540 YMR230W_13_732413_733140_INTRON_53_462 intron 26.447276 137.569399 26.447276 112.122123 69.2846995 1.840637338 -0.129878 188 67 SH10727 10727 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 521 534 1100.260227 1689.319928 1394.790078 3.144508849 -0.129889 150 13 SH16278 16278 YDR447C_4_1355542_1354818_INTRON_4_317 intron 24.83912 129.632235 24.83912 105.793115 65.3161175 1.815020362 -0.129995 183 91 SH14476 14476 MT 21S rRNA 21S rRNA3 22.490717 110.258578 22.490717 88.767861 55.629289 1.745303509 -0.130007 155 84 SH16654 16654 YFR031C-A_6_221405_220494_INTRON_5_151 3' exon 27.697818 141.616708 27.697818 114.91889 71.308354 1.853140412 -0.130025 37 12 SH4853 4853 snR8 snR8 46 60 26.273895 111.742256 69.0080755 1.838899916 -0.130071 35 23 SH3744 3744 Val4 5' flank 24.66759 104.877138 64.772364 1.811389748 -0.130074 109 28 SH15414 15414 YBL059W_2_110555_111205_INTRON_287_355 5' exon 23.008408 114.948868 23.008408 92.94046 57.974434 1.763236517 -0.130074 89 72 SH20123 20123 YDL079C spliced 24.902109 106.140848 65.5214785 1.816383689 -0.130097 193 20 SH10653 10653 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 151 168 43.198972 139.676551 91.4377615 1.961125585 -0.130102 140 2 SH17801 17801 YKL190W_11_82949_83552_INTRON_53_128 exon/intron 23.093828 115.715681 23.093828 93.621853 58.3578405 1.766099213 -0.130114 45 18 SH11669 11669 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5231 5246 72.059028 184.921681 128.4903545 2.108870527 -0.130115 55 21 SH12586 12586 MT_15S MT_15S 22.612961 111.369464 22.612961 89.756503 56.184732 1.749618314 -0.130135 86 83 SH10262 10262 RUF7 5' 22.08971 85.618809 53.8542595 1.731220059 -0.130195 72 21 SH9127 9127 snR7 U5 RNA 5' 26.810876 112.962948 69.886912 1.844395851 -0.130278 168 61 SH9981 9981 RUF5-1 RUF5-1 711 732 28.377187 116.332663 72.354925 1.859468098 -0.130299 107 87 SH8834 8834 LSR1 / U2 RNA U2 811 825 23.315632 95.412204 59.363918 1.773522557 -0.130315 129 26 SH15936 15936 YDL115C_4_255042_253994_INTRON_1_88 intron 23.352654 118.062099 23.352654 95.709445 59.5310495 1.774743539 -0.130315 76 85 SH2462 2462 Phe5 81-91 + 3' flank 81 24.454241 103.75171 64.1029755 1.806878189 -0.130317 185 47 SH14865 14865 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 / 3' 23.551828 119.872338 23.551828 97.32051 60.436169 1.781296927 -0.130359 28 73 SH9529 9529 RUF3 RUF3 31 47 33.867226 124.930192 79.398709 1.899813441 -0.130428 72 5 SH12645 12645 MT_15S MT_15S 20.817663 96.222755 20.817663 76.405092 48.6113775 1.686737928 -0.130468 93 62 SH12891 12891 MT COX1 COX1ai1 25.570815 134.3597 25.570815 109.788885 67.67985 1.830459387 -0.13048 71 77 SH9849 9849 RUF5-1 RUF5-1 51 69 24.221904 102.520766 63.371335 1.801892856 -0.130483 19 18 SH12149 12149 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7631 7648 351.809749 619.359406 485.5845775 2.686264885 -0.130486 112 27 SH16015 16015 YDL137W_4_216158_217074_INTRON_1_332 intron/exon 47.838796 193.814575 47.838796 146.975779 97.4072875 1.98859145 -0.130495 71 13 SH17732 17732 YKL156W_11_158616_159214_INTRON_4_353 intron 34.932408 160.521937 34.932408 126.589529 80.7609685 1.907201518 -0.130513 195 53 SH9546 9546 RUF3 RUF3 116 133 41.638982 137.240849 89.4399155 1.95153138 -0.13052 126 75 SH11572 11572 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4746 4759 66.148569 175.584708 120.8666385 2.082306444 -0.13053 149 87 SH1487 1487 Leu3 5' flank 23.236369 94.800349 59.018359 1.77098713 -0.13055 17 13 SH1236 1236 Ile1 3' flank 25.733781 110.544055 68.138918 1.833395233 -0.130563 8 83 SH1356 1356 Ile3 3' flank 26.672362 112.669807 69.6710845 1.843052571 -0.13057 12 15 SH9147 9147 snR7 U5 RNA U5 6 23 35.17011 126.983869 81.0769895 1.908897614 -0.130606 27 62 SH2735 2735 Pro5 tRNA-intron/exon 56 71 96.97881 224.718642 160.848726 2.206417625 -0.130611 24 97 SH17835 17835 YKR094C_11_618384_617630_INTRON_9_376 intron 25.478422 133.77769 25.478422 109.299268 67.388845 1.828588013 -0.130614 11 9 SH21326 21326 YPR028W spliced 25.095968 107.230116 66.163042 1.820615465 -0.130619 60 101 SH14427 14427 MT 21S rRNA 21S rRNA3 24.074672 124.703485 24.074672 101.628813 62.8517425 1.798317323 -0.13063 53 54 SH17886 17886 YLR048W_12_242233_243350_INTRON_91_449 intron 24.800631 129.441871 24.800631 105.64124 65.2209355 1.814387024 -0.130662 193 85 SH19618 19618 RNA14 1.1 22.396144 88.080021 55.2380825 1.742238594 -0.130702 207 81 SH18062 18062 YLR344W_12_819312_820142_INTRON_20_466 5' exon 26.280641 137.079113 26.280641 111.798472 69.0395565 1.839097993 -0.130762 141 55 SH17174 17174 YHR021C_8_148660_147862_INTRON_4_553 intron 26.695706 138.430035 26.695706 112.734329 69.7150175 1.843326341 -0.130773 14 62 SH3667 3667 Val2 3' flank 21.331216 80.070575 50.7008955 1.70501563 -0.130831 33 61 SH20712 20712 YJL041W spliced 22.989239 92.861225 57.925232 1.762867782 -0.130835 100 9 SH5686 5686 snR34 snR34 351 363 28.908113 117.219083 73.063598 1.863701055 -0.130853 129 37 SH16340 16340 YDR500C_4_1450856_1450201_INTRON_8_396 intron 25.080731 131.25091 25.080731 107.170179 66.125455 1.820368673 -0.130884 214 25 SH13131 13131 MT COX1 COX1ai3 23.741401 121.659823 23.741401 98.918422 61.3299115 1.787672338 -0.130916 142 62 SH12979 12979 MT COX1 COX1ai2 22.624419 111.546732 22.624419 89.922313 56.273366 1.750302893 -0.130922 156 7 SH20617 20617 YHR097C spliced 25.01792 106.834405 65.9261625 1.819057797 -0.130924 68 65 SH11191 11191 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2841 2856 89.224111 212.356887 150.790499 2.178373978 -0.130933 147 9 SH21479 21479 copy of SH1652 22.786232 91.229043 57.0076375 1.755933043 -0.130961 193 77 SH5218 5218 snR30 5' 21.497501 81.279008 51.3882545 1.710863866 -0.130969 108 74 SH20574 20574 YHR012W spliced 23.956125 100.685895 62.32101 1.794634483 -0.130976 37 56 SH20432 20432 YGL076C spliced 24.919538 106.30898 65.614259 1.816998229 -0.130988 129 91 SH12667 12667 MT_15S 3' 22.210527 107.85005 22.210527 86.639523 54.425025 1.735798637 -0.130999 6 81 SH6408 6408 snR43 3' 23.067874 93.502968 58.285421 1.765559938 -0.131024 160 78 SH17513 17513 YJL136C_10_156971_156248_INTRON_25_484 intron 24.760805 129.218818 24.760805 105.458013 65.109409 1.813643753 -0.131038 88 81 SH9804 9804 RUF4 3' 24.153899 102.202108 63.1780035 1.800565898 -0.131044 6 10 SH17106 17106 YHR001W-A_8_107819_108115_INTRON_7_69 5' exon 24.729861 129.022971 24.729861 105.29311 65.0114855 1.81299009 -0.131058 213 4 SH18976 18976 YOR096W_15_505793_506766_INTRON_145_545 intron 25.785821 135.477973 25.785821 110.692152 68.2389865 1.834032568 -0.131062 56 6 SH21628 21628 copy of SH7733 25.626777 110.145317 67.886047 1.83178052 -0.131089 151 8 SH13980 13980 MT COB intronic 23.018455 115.137044 23.018455 93.118589 58.068522 1.763940772 -0.131106 172 60 SH12865 12865 MT COX1 COX1ai1 26.292326 137.138396 26.292326 111.84607 69.069198 1.839284413 -0.131118 83 19 SH10212 10212 RUF6 RUF6 906 920 24.89085 106.165803 65.5283265 1.816429077 -0.131126 30 73 SH12926 12926 MT COX1 COX1ai2 25.511015 134.031884 25.511015 109.520869 67.515942 1.829406331 -0.131136 189 25 SH10512 10512 RUF8 RUF8 486 508 26.091426 111.396138 68.743782 1.837233422 -0.131206 82 88 SH19569 19569 AEP2/ATP13 0.6 25.854894 110.859617 68.3572555 1.834784618 -0.131231 118 86 SH17704 17704 YKL081W_11_282533_284097_INTRON_206_531 intron 22.402826 109.587987 22.402826 88.185161 55.2939935 1.742677957 -0.131267 35 4 SH14695 14695 MT tRNA thr2 5' 22.505314 110.51899 22.505314 89.013676 55.759495 1.746318832 -0.131399 131 89 SH14560 14560 MT 21S rRNA 21S rRNA3 26.50789 137.857932 26.50789 112.350042 69.428966 1.841540697 -0.131411 149 76 SH15907 15907 YDL083C_4_307788_306925_INTRON_25_456 intron 31.512585 151.845606 31.512585 121.333021 76.422803 1.883222962 -0.131413 58 80 SH17035 17035 YGR183C_7_859471_859058_INTRON_4_216 intron 27.885306 142.306481 27.885306 115.421175 71.6532405 1.855235836 -0.131485 165 63 SH14316 14316 MT VAR1 includes 5’ processing site VAR1 22.286757 108.573456 22.286757 87.286699 54.786728 1.738675364 -0.131501 84 87 SH7223 7223 snR64 3' 25.757812 110.654069 68.2059405 1.833822202 -0.131502 62 75 SH13261 13261 MT COX1 COX1-ai4 23.36005 118.247164 23.36005 95.887114 59.623582 1.775418064 -0.131518 82 98 SH14377 14377 MT ORF9 and ORF10 (hypothetical) ORF10 23.546933 119.943573 23.546933 97.39664 60.4717865 1.781552799 -0.131519 213 22 SH3863 3863 RNaseP RNaseP 281 293 25.045279 107.038202 66.0417405 1.81981851 -0.131592 23 48 SH8531 8531 snR19 / U1 RNA U1 151 167 25.262073 108.211054 66.7365635 1.82436384 -0.131598 205 98 SH2630 2630 Pro3 101-103 + 3' flank 101 23.777974 99.289127 61.5335505 1.789111975 -0.131621 167 34 SH4503 4503 U3b (snR17b) U3b 71 85 24.734534 105.365212 65.049873 1.813246453 -0.131626 37 37 SH6182 6182 snR40 5' 24.89556 106.233631 65.5645955 1.816669386 -0.131635 176 50 SH20668 20668 YIL069C spliced 24.794693 105.693582 65.2441375 1.814541494 -0.131679 89 48 SH12953 12953 MT COX1 COX1ai2 23.733767 121.670077 23.733767 98.93631 61.3350385 1.787708642 -0.131707 104 45 SH17898 17898 YLR061W_12_263195_263949_INTRON_13_401 5' exon 41.629804 177.939937 41.629804 137.310133 89.4699685 1.951677284 -0.131714 58 87 SH2950 2950 Ser1 5' flank - tRNA1 1 23.810176 99.565848 61.688012 1.790200775 -0.131748 80 42 SH5575 5575 snR33 snR33 161 177 76.306198 191.862134 134.084166 2.127377495 -0.131755 30 55 SH19754 19754 Negative Control 24.724633 105.325034 65.0248335 1.813079249 -0.131785 200 67 SH17824 17824 YKR057W_11_551293_551878_INTRON_25_346 intron 25.484734 133.923796 25.484734 109.439062 67.461898 1.829058556 -0.131844 50 103 SH18128 18128 YLR388W_12_898158_898821_INTRON_1_488 intron/exon 26.043186 136.368702 26.043186 111.325516 68.684351 1.836857799 -0.131865 50 18 SH9248 9248 snR6 / U6 RNA 111-112 + 3' 111 20.653358 75.389978 48.021668 1.681437241 -0.131919 64 97 SH7831 7831 snoRNA cluster1 intergenic/snR74 24.83851 129.788917 24.83851 105.950407 65.3944585 1.815540948 -0.131928 182 72 SH17417 17417 YIL111W_9_155219_155762_INTRON_2_89 5' exon 21.82967 104.61126 21.82967 83.78159 52.80563 1.722680228 -0.131981 82 26 SH14159 14159 MT COB intronic 27.908677 142.4138 27.908677 115.505123 71.7069 1.855560948 -0.132016 165 55 SH12815 12815 MT COX1 COX1ai1 22.394303 109.581821 22.394303 88.187518 55.2909105 1.742653742 -0.132027 148 84 SH14484 14484 MT 21S rRNA 21S rRNA3 23.209416 116.939139 23.209416 94.729723 58.9695695 1.770627957 -0.132041 87 21 SH12115 12115 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7461 7478 82.378417 201.559304 141.9688605 2.152193097 -0.13205 69 17 SH2075 2075 Lys4 tRNA-intron 41 58 22.989599 92.981143 57.985371 1.76331844 -0.132063 143 79 SH9344 9344 RUF1 RUF1 296 312 31.169801 120.830509 76.000155 1.880814478 -0.132065 175 99 SH13465 13465 MT COX1 intronic 40.236198 174.402691 40.236198 135.166493 87.7013455 1.943006256 -0.132133 60 75 SH3924 3924 RNase MRP RNaseMRP 36 57 23.290427 95.390863 59.340645 1.773352263 -0.132163 13 35 SH11792 11792 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5846 5861 10917.0538 12780.69072 11848.87226 4.073677017 -0.132196 104 2 SH21836 21836 copy of SH16601 26.866661 113.203276 70.0349685 1.845314938 -0.1322 104 67 SH14579 14579 MT 21S rRNA intronic 24.538858 127.898898 24.538858 104.36004 64.449449 1.809219209 -0.132203 126 102 SH13911 13911 MT COB Cytbi3 21.506779 101.955304 21.506779 81.448525 51.477652 1.71161873 -0.132216 5 86 SH21120 21120 YNL112W spliced 42.418093 138.585113 90.501603 1.956656272 -0.132235 17 24 SH13075 13075 MT COX1 COX1ai3 22.489937 110.460391 22.489937 88.970454 55.7301955 1.746090567 -0.132253 22 41 SH15671 15671 YBR191W_2_606228_607098_INTRON_12_399 intron 25.609377 134.761477 25.609377 110.1521 67.8807385 1.831746559 -0.132262 123 36 SH19857 19857 Negative Control 28.415524 116.505511 72.4605175 1.860101431 -0.132267 79 13 SH9538 9538 RUF3 RUF3 76 92 23.805911 99.585919 61.695915 1.79025641 -0.132287 181 53 SH10931 10931 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1541 1554 55.101179 158.413609 106.757394 2.028397964 -0.132334 53 6 SH18033 18033 YLR316C_12_766358_765266_INTRON_230_285 intron/exon 25.501586 134.075448 25.501586 109.573862 67.537724 1.829546421 -0.132348 129 102 SH5554 5554 snR33 snR33 56 74 23.63467 98.19283 60.91375 1.784715337 -0.132348 35 54 SH19705 19705 Negative Control 26.748394 112.947166 69.84778 1.844152607 -0.132352 155 38 SH17752 17752 YKL157W_11_154993_158183_INTRON_282_664 intron 64.835503 237.545811 64.835503 173.710308 119.2729055 2.076541799 -0.13236 183 64 SH3738 3738 Val4 5' flank 27.969114 115.66031 71.814712 1.856213423 -0.132379 92 14 SH18244 18244 YML026C_13_223828_222987_INTRON_48_448 3' exon 21.832822 104.67215 21.832822 83.839328 52.836075 1.722930548 -0.13239 43 84 SH16990 16990 YGR118W_7_726968_727725_INTRON_66_385 intron 23.973468 123.949129 23.973468 100.975661 62.4745645 1.795703237 -0.132394 168 63 SH20709 20709 YJL024C spliced 24.208136 102.606871 63.4075035 1.802140654 -0.132469 53 16 SH20298 20298 YEL012W spliced 24.889808 106.273403 65.5816055 1.816782044 -0.132484 39 43 SH14961 14961 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 24.505461 127.709779 24.505461 104.204318 64.3548895 1.808581549 -0.132494 80 84 SH11200 11200 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2886 2904 28.840217 117.204982 73.0225995 1.863457289 -0.132525 173 10 SH14007 14007 MT COB intronic 22.703641 112.419588 22.703641 90.715947 56.709794 1.75365807 -0.132576 185 21 SH17011 17011 YGR148C_7_788173_787307_INTRON_1_392 intron 25.553262 134.432821 25.553262 109.879559 67.7164105 1.830693929 -0.132638 196 53 SH9059 9059 snR14 / U4 RNA 5' 24.076509 101.854051 62.96528 1.799101139 -0.132642 55 30 SH19084 19084 YOR293W_15_867094_867848_INTRON_53_489 intron 23.998308 124.209002 23.998308 101.210694 62.604501 1.796605558 -0.132682 42 56 SH4671 4671 snR3 3' 31.442272 121.297564 76.369918 1.882922324 -0.132697 127 42 SH4812 4812 snR5 3' 22.819269 91.662843 57.241056 1.757707637 -0.1327 9 26 SH14645 14645 MT 21S rRNA intronic 23.767532 122.084144 23.767532 99.316612 61.542072 1.789172114 -0.13273 118 35 SH11032 11032 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2046 2059 6686.475465 8312.33614 7499.405803 3.875026854 -0.132841 117 94 SH20030 20030 YBR181C spliced 30.48927 119.827217 75.1582435 1.875976622 -0.132856 66 5 SH13484 13484 MT COX1 intronic 23.980931 124.085305 23.980931 101.104374 62.5426525 1.796176296 -0.133041 161 73 SH640 640 Gln2 5' flank - tRNA3 5' flank 3 32.671261 123.250806 77.9610335 1.891877588 -0.133049 178 92 SH1027 1027 Gly2 3' flank 22.313087 87.639108 54.9760975 1.740173908 -0.133074 183 88 SH8303 8303 snoRNA cluster4 intergenic 26.51437 137.983157 26.51437 112.468787 69.4915785 1.841932177 -0.133156 78 5 SH14126 14126 MT COB Exon5 22.986884 115.051782 22.986884 93.064898 58.025891 1.763621818 -0.133167 146 100 SH3893 3893 RNaseP 3' 28.037019 115.858855 71.947937 1.857018346 -0.133181 184 81 SH21249 21249 YPL031C spliced 24.071837 101.873061 62.972449 1.799150583 -0.133195 116 67 SH10583 10583 RUF8 RUF8 841 860 21.259704 79.748696 50.5042 1.703327496 -0.133199 109 58 SH13722 13722 MT COB 5' 21.286084 100.224647 21.286084 79.938563 50.6123235 1.704256275 -0.133207 158 38 SH10970 10970 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1736 1754 705.335428 1139.661158 922.498293 2.964965571 -0.133213 138 83 SH17983 17983 YLR275W_12_694378_694800_INTRON_6_95 5' exon 28.106274 143.120948 28.106274 116.014674 72.060474 1.857697115 -0.133243 87 60 SH3040 3040 Ser2 3' flank 26.445269 112.319588 69.3824285 1.841249497 -0.133269 58 24 SH4487 4487 U3b (snR17b) 5' - 10 10 23.901309 100.47227 62.1867895 1.793698136 -0.133282 87 43 SH17745 17745 YKL157W_11_154993_158183_INTRON_282_664 exon/intron 23.668098 121.23077 23.668098 98.562672 61.115385 1.786150552 -0.133312 183 45 SH12333 12333 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.629463 134.982291 25.629463 110.352828 67.9911455 1.832452358 -0.133319 148 14 SH6202 6202 snR40 snR40 71 88 108.57273 243.495118 176.033924 2.24559637 -0.133323 18 36 SH6231 6231 snR42 5' 22.873397 92.162492 57.5179445 1.759803357 -0.133325 137 99 SH13137 13137 MT COX1 cox1ai3/intronic 24.287888 126.392061 24.287888 103.104173 63.6960305 1.804112368 -0.133333 2 87 SH11 11 Ala1 5' flank 23.78379 99.512736 61.648263 1.789920844 -0.133346 164 46 SH21592 21592 copy of SH6253 47.867006 147.241688 97.554347 1.989246626 -0.133369 24 60 SH12824 12824 MT COX1 COX1ai1 24.145424 125.489484 24.145424 102.34406 63.244742 1.801024425 -0.133379 139 39 SH21434 21434 oligo-dT; WTP_216 35296.25355 35910.61389 35603.43372 4.551491885 -0.133402 12 42 SH10116 10116 RUF6 RUF6 426 447 46.74538 145.472069 96.1087245 1.982762814 -0.133449 178 64 SH8321 8321 snoRNA cluster4 intergenic 22.07091 106.837737 22.07091 85.766827 53.9188685 1.73174077 -0.133489 155 98 SH17433 17433 YIL133C_9_99416_98527_INTRON_32_321 intron 25.123557 131.745078 25.123557 107.621521 66.372539 1.821988431 -0.133492 61 102 SH15415 15415 YBL059W_2_110555_111205_INTRON_287_355 5' exon 27.570347 141.419663 27.570347 114.849316 71.2098315 1.852539958 -0.133504 42 14 SH14344 14344 MT VAR1 includes 5’ processing site VAR1/3' 22.189009 107.88799 22.189009 86.698981 54.443995 1.735949985 -0.133525 85 62 SH2160 2160 Met2 5' flank 32.381594 122.82826 77.604927 1.889889295 -0.133531 129 21 SH3847 3847 RNaseP RNaseP 201 218 25.342255 108.810788 67.0765215 1.826570533 -0.133537 212 30 SH12563 12563 MT_15S MT_15S 27.320036 140.617561 27.320036 114.297525 70.8087805 1.850087115 -0.133564 15 84 SH20425 20425 YGL031C spliced 38.132912 131.913061 85.0229865 1.929536356 -0.133671 182 93 SH14071 14071 MT COB Cytbi4 27.669219 141.748193 27.669219 115.078974 71.3740965 1.853540624 -0.133682 14 32 SH10664 10664 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 206 224 35.246786 127.307084 81.276935 1.909967318 -0.133703 185 80 SH2992 2992 Ser2 5' flank 22.018965 85.379339 53.699152 1.729967428 -0.133707 12 64 SH15108 15108 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 24.327707 126.677753 24.327707 103.350046 63.8388765 1.805085235 -0.13373 102 56 SH17366 17366 YIL052C_9_257061_256224_INTRON_38_509 intron 23.630024 120.924419 23.630024 98.294395 60.9622095 1.785060699 -0.133732 142 61 SH16266 16266 YDR447C_4_1355542_1354818_INTRON_4_317 5' exon 49.761977 198.987112 49.761977 150.225135 99.993556 1.999972013 -0.133737 10 78 SH20429 20429 YGL033W spliced 31.419696 121.324794 76.372245 1.882935557 -0.13376 102 36 SH18026 18026 YLR306W_12_744151_744851_INTRON_4_137 intron/exon 25.602474 134.849033 25.602474 110.246559 67.9245165 1.832026556 -0.133788 14 44 SH7226 7226 snR65 5' 33.878059 125.153095 79.515577 1.900452215 -0.133801 24 47 SH21549 21549 copy of SH4562 27.431129 114.559745 70.995437 1.851230437 -0.133817 81 72 SH4796 4796 snR5 snR5 151 173 24.109206 102.186336 63.147771 1.800358025 -0.133831 122 74 SH15137 15137 MT tRNA Phe 3' 25.784526 135.636967 25.784526 110.852441 68.3184835 1.834538218 -0.133838 85 30 SH11473 11473 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4251 4268 16103.3267 18008.02224 17055.67447 4.231868898 -0.13384 154 13 SH13474 13474 MT COX1 intronic 24.71403 129.1531 24.71403 105.43907 65.07655 1.813424521 -0.133855 79 15 SH17561 17561 YJL189W_10_75932_76473_INTRON_7_392 intron 23.882758 123.263061 23.882758 100.380303 62.1315305 1.793312052 -0.133873 111 35 SH16844 16844 YGL178W_7_167356_170575_INTRON_4_643 intron 22.881615 114.167068 22.881615 92.285453 57.583534 1.760298315 -0.133906 213 56 SH19649 19649 SIR1 2.2 23.900841 100.533568 62.2172045 1.793910494 -0.133914 120 59 SH18632 18632 YNL096C_14_444312_443395_INTRON_145_489 intron 25.279822 132.784023 25.279822 108.504201 66.8920115 1.825374256 -0.133915 147 91 SH7157 7157 snR63 3' 22.58818 89.915188 56.251684 1.750135528 -0.133939 174 58 SH9056 9056 snR17a / U3a 3' 22.368095 88.15698 55.2625375 1.742430823 -0.133955 28 101 SH4084 4084 SRP RNA SRP RNA 311 323 24.426245 103.900509 64.163377 1.807287213 -0.133989 2 10 SH10076 10076 RUF6 RUF6 226 242 26.583278 112.676179 69.6297285 1.842794702 -0.134027 58 54 SH13163 13163 MT COX1 intronic 24.787736 129.642656 24.787736 105.85492 65.321328 1.815055005 -0.134075 213 63 SH12372 12372 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.578817 144.451541 28.578817 116.872724 72.7257705 1.861688331 -0.134093 85 81 SH4947 4947 snR9 snR9 141 158 24.003845 101.40331 62.7035775 1.79729232 -0.134094 47 35 SH18263 18263 YML056C_13_164176_162194_INTRON_461_868 intron 33.348101 156.708924 33.348101 124.360823 78.854462 1.896826273 -0.134102 161 32 SH15059 15059 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.562359 111.293766 22.562359 89.731407 56.146883 1.749325651 -0.13419 145 16 SH14238 14238 MT tRNA Ser 5' 20.63591 95.077667 20.63591 75.441757 48.0388335 1.681592453 -0.134198 199 79 SH3061 3061 Ser3 tRNA 1 13 513.392863 862.571677 687.98227 2.837577246 -0.134229 199 74 SH17560 17560 YJL189W_10_75932_76473_INTRON_7_392 intron 21.747848 104.11937 21.747848 83.371522 52.559685 1.720652754 -0.134231 130 67 SH4197 4197 telomerase RNA telomerase 21 38 25.896319 111.13255 68.5144345 1.835782078 -0.13426 179 41 SH4674 4674 snR4 5' 23.333838 95.945931 59.6398845 1.775536794 -0.134261 40 16 SH1095 1095 Gly4 5' flank 24.268417 103.076406 63.6724115 1.803951298 -0.134282 195 44 SH11514 11514 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4456 4469 39.743482 134.535852 87.139667 1.940215896 -0.134284 169 34 SH9902 9902 RUF5-1 RUF5-1 316 335 22.802602 91.682189 57.2423955 1.7577178 -0.134312 163 54 SH13459 13459 MT COX1 intronic 26.431897 137.784751 26.431897 112.352854 69.3923755 1.841311755 -0.134333 177 80 SH3835 3835 RNaseP RNaseP 141 153 27.727274 115.247899 71.4875865 1.854230635 -0.134346 10 92 SH6781 6781 snR50 81-90 + 3' 81 22.941279 92.815277 57.878278 1.762515601 -0.134354 130 63 SH4216 4216 telomerase RNA telomerase 116 131 30.294513 119.610924 74.9527185 1.874787389 -0.134356 127 50 SH10537 10537 RUF8 RUF8 611 630 24.401235 103.79909 64.1001625 1.80685913 -0.134394 97 74 SH7030 7030 snR62 5' 24.645569 105.117006 64.8812875 1.812119459 -0.134425 118 12 SH8617 8617 snR19 / U1 RNA U1 581 597 22.87864 92.312089 57.5953645 1.760387531 -0.134433 179 45 SH16759 16759 YGL087C_7_346902_346404_INTRON_12_96 exon/intron 23.075576 115.970264 23.075576 93.894688 58.485132 1.767045474 -0.134461 15 94 SH15921 15921 YDL083C_4_307788_306925_INTRON_25_456 3' exon 25.15331 132.022456 25.15331 107.869146 66.511228 1.822894966 -0.134515 146 71 SH12050 12050 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7136 7151 32.978011 123.818244 78.3981275 1.89430569 -0.134565 33 73 SH2333 2333 Phe3 5' flank - tRNA10 10 32.025085 122.332131 77.178608 1.887496941 -0.134584 78 67 SH17457 17457 YIL148W_9_68708_69528_INTRON_9_442 intron 23.466957 119.521067 23.466957 97.05411 60.2605335 1.780032972 -0.134585 148 10 SH14768 14768 MT ORF11; tRNA Leu; tRNA Gln orf11 / tRNA Leu 22.881757 114.238196 22.881757 92.356439 57.619098 1.760566455 -0.134629 81 93 SH19562 19562 CBP1 2.2 22.069776 85.861575 53.9656755 1.732117618 -0.134644 109 25 SH15960 15960 YDL130W_4_229906_230527_INTRON_115_415 intron 24.879034 130.275836 24.879034 106.396802 65.637918 1.817154797 -0.134661 61 31 SH19579 19579 AEP2/ATP13 0.6 22.890666 92.432342 57.661504 1.760885966 -0.134663 110 51 SH13206 13206 MT COX1 COX1-ai4 23.345105 118.422173 23.345105 96.077068 59.7110865 1.776054974 -0.13467 118 102 SH3770 3770 Val4 3' flank 20.355625 73.572048 46.9638365 1.671763567 -0.13468 136 60 SH6086 6086 snR37 snR37 346 363 24.123673 102.332906 63.2282895 1.800911433 -0.134692 93 76 SH13724 13724 MT COB 5' 20.990547 97.940812 20.990547 77.950265 49.470406 1.694345475 -0.134727 107 73 SH17979 17979 YLR211C_12_564531_563792_INTRON_19_77 intron/exon 22.225444 108.322815 22.225444 87.097371 54.6614075 1.73768081 -0.134741 135 78 SH5969 5969 snR36 snR36 301 317 23.871708 100.379356 62.125532 1.793270121 -0.134748 99 28 SH19582 19582 AEP2/ATP13 0.6 25.961913 111.311971 68.636942 1.836557926 -0.134766 199 87 SH17384 17384 YIL069C_9_232366_231550_INTRON_4_412 5' exon 24.429655 127.41291 24.429655 103.983255 64.206455 1.807578692 -0.134778 151 33 SH19100 19100 YOR312C_15_901173_900242_INTRON_2_427 intron 37.264827 166.886988 37.264827 130.622161 83.943494 1.923987042 -0.134803 8 71 SH18224 18224 YML026C_13_223828_222987_INTRON_48_448 intron 24.882027 130.307801 24.882027 106.425774 65.6539005 1.817260533 -0.134814 154 45 SH9866 9866 RUF5-1 RUF5-1 136 157 22.935628 92.814221 57.8749245 1.762490437 -0.134818 19 89 SH6582 6582 snR47 snR47 16 32 22.03983 85.645895 53.8428625 1.731128141 -0.13486 207 70 SH9532 9532 RUF3 RUF3 46 64 28.991821 117.581462 73.2866415 1.86502482 -0.134875 89 30 SH1396 1396 Leu1 tRNA-intron 51 63 24.756852 105.758386 65.257619 1.814631224 -0.134921 153 92 SH12637 12637 MT_15S MT_15S 55.710695 214.274482 55.710695 159.563787 107.637241 2.031962557 -0.134929 124 77 SH4142 4142 SRP RNA SRP RNA 601 615 90.854811 215.481314 153.1680625 2.185168219 -0.134982 155 56 SH21368 21368 Leu1_5 spliced 24.817257 106.089869 65.453563 1.815933293 -0.134983 182 31 SH20811 20811 YKL186C spliced 25.950933 111.300182 68.6255575 1.836485886 -0.13499 58 31 SH19019 19019 YOR182C_15_678792_678190_INTRON_4_414 intron 23.449896 119.414084 23.449896 96.964188 60.207042 1.779647291 -0.135071 53 34 SH9456 9456 RUF2 RUF2 121 138 22.130866 86.385773 54.2583195 1.734466339 -0.135128 150 53 SH13341 13341 MT COX1 COX1-ai5a 22.641015 112.094374 22.641015 90.453359 56.547187 1.752411005 -0.135135 26 2 SH19552 19552 CBP1 2.2 25.298156 108.708659 67.0034075 1.82609689 -0.135146 138 66 SH9188 9188 snR7 U5 RNA 211-215 + 3' 211 21.773055 83.635337 52.704196 1.721845193 -0.135168 55 97 SH10764 10764 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 706 726 26.258234 112.009987 69.1341105 1.839692379 -0.135177 3 50 SH6673 6673 snR48 3' 28.418827 116.6768 72.5478135 1.860624328 -0.13521 77 45 SH17183 17183 YHR021C_8_148660_147862_INTRON_4_553 intron 195.881137 574.567256 195.881137 379.686119 287.783628 2.459066083 -0.135271 138 49 SH3774 3774 Val4 3' flank 22.20021 86.951851 54.5760305 1.737001945 -0.135335 68 64 SH5496 5496 snR32 snR32 141 160 22.181108 86.802489 54.4917985 1.736331142 -0.135353 127 40 SH13807 13807 MT COB Exon2/cytbi2 22.898342 114.461212 22.898342 92.56287 57.730606 1.761406116 -0.135365 31 7 SH12131 12131 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7541 7554 28.69161 117.127553 72.9095815 1.862784605 -0.13538 54 51 SH3359 3359 Thr3 3' flank 25.88166 111.165245 68.5234525 1.835839236 -0.135381 169 28 SH18843 18843 YNL312W_14_48286_49215_INTRON_8_115 exon/intron 24.675008 129.029868 24.675008 105.35486 65.014934 1.813013126 -0.135382 79 63 SH13225 13225 MT COX1 COX1-ai4 23.449324 119.442008 23.449324 96.992684 60.221004 1.779747992 -0.135404 193 72 SH17363 17363 YIL052C_9_257061_256224_INTRON_38_509 intron 25.639482 135.227761 25.639482 110.588279 68.1138805 1.833235623 -0.135406 38 17 SH4121 4121 SRP RNA SRP RNA 496 508 59.074829 164.92292 111.9988745 2.049213658 -0.135425 175 30 SH8997 8997 snR17a / U3a U3a 271 288 50.317769 151.215913 100.766841 2.003317644 -0.135435 109 33 SH14591 14591 MT 21S rRNA Sce1 endonuc 24.038896 124.873125 24.038896 101.834229 62.9365625 1.798903019 -0.13544 35 26 SH17587 17587 YJL191W_10_73786_74610_INTRON_11_418 intron 25.031302 131.323458 25.031302 107.292156 66.161729 1.820606846 -0.135512 22 72 SH13612 13612 MT ATP8/AAP1 3' 22.675802 112.446968 22.675802 90.771166 56.723484 1.753762898 -0.135526 142 67 SH16262 16262 YDR424C_4_1319830_1319376_INTRON_26_121 intron 24.306499 126.693571 24.306499 103.387072 63.8467855 1.805139037 -0.135591 13 13 SH15828 15828 YDL075W_4_322225_322987_INTRON_58_478 5' exon 23.394386 118.963916 23.394386 96.56953 59.981958 1.778020638 -0.135624 25 44 SH14429 14429 MT 21S rRNA 21S rRNA3 23.223288 117.414591 23.223288 95.191303 59.2072955 1.772375224 -0.135638 183 43 SH19816 19816 Negative Control 27.944077 115.810094 71.8770855 1.856590459 -0.135714 36 28 SH20353 20353 YER117W spliced 23.170367 94.774174 58.9722705 1.770647849 -0.135716 149 53 SH15296 15296 MT 9S rRNA 3' 22.609795 111.867612 22.609795 90.257817 56.433806 1.751539341 -0.135729 6 68 SH5905 5905 snR36 5' 40.44717 135.746366 88.096768 1.944959976 -0.135732 132 93 SH6665 6665 snR48 3' 42.858171 139.545652 91.2019115 1.960003941 -0.135807 196 45 SH5067 5067 snR11 5' 24.267157 103.195091 63.731124 1.804351578 -0.135832 86 43 SH211 211 Arg3 5' flank 23.641015 98.597393 61.119204 1.786177689 -0.135843 101 32 SH13671 13671 MT ATP6 ATP6 23.682535 121.620066 23.682535 98.937531 61.310033 1.78753155 -0.135847 21 68 SH6941 6941 snR58 snR58 66 82 32.886942 123.754933 78.3209375 1.893877877 -0.135849 64 2 SH20101 20101 YDL061C spliced 30.732632 120.378239 75.5554355 1.878265713 -0.13585 22 71 SH12448 12448 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.820047 139.139242 26.820047 113.319195 70.069621 1.845529768 -0.135868 119 35 SH12826 12826 MT COX1 COX1ai1 33.727636 157.779334 33.727636 125.051698 79.389667 1.89976398 -0.135892 62 67 SH19930 19930 YBL018C spliced 23.143003 94.574422 58.8587125 1.769810758 -0.135917 143 49 SH13180 13180 MT COX1 Exon4 34.480695 159.678705 34.480695 126.19801 80.3393525 1.904928327 -0.135942 42 20 SH9515 9515 RUF3 5' 24.809817 106.133044 65.4714305 1.81605183 -0.135985 159 64 SH8534 8534 snR19 / U1 RNA U1 166 182 36.929784 130.170958 83.550371 1.921948383 -0.136035 126 46 SH795 795 Glu1 5' flank - tRNA7 7 28.146638 116.275805 72.2112215 1.858604691 -0.136041 49 78 SH18167 18167 YLR448W_12_1028848_1029762_INTRON_16_399 intron 31.371933 151.756176 31.371933 121.384243 76.378088 1.882968782 -0.136042 135 34 SH5298 5298 snR30 snR30 341 359 27.880551 115.693706 71.7871285 1.856046582 -0.136099 165 39 SH19545 19545 CBP1 2.2 24.405105 103.959941 64.182523 1.807416785 -0.136112 181 26 SH7443 7443 snR69 3' 23.271546 95.628062 59.449804 1.774150427 -0.136134 206 35 SH15375 15375 YBL027W_2_168385_169338_INTRON_3_386 intron 26.51625 138.167969 26.51625 112.651719 69.5839845 1.842509294 -0.136147 83 55 SH468 468 Asp2 5' flank 24.133113 102.500844 63.3169785 1.801520182 -0.136151 96 4 SH1554 1554 Leu4 5' flank 22.518702 89.566926 56.042814 1.748519934 -0.136174 53 51 SH1362 1362 Ile3 3' flank 22.056724 85.900829 53.9787765 1.732223036 -0.136222 45 101 SH11805 11805 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5911 5924 25.764447 110.947198 68.3558225 1.834775513 -0.136228 58 73 SH2145 2145 Met1 3' flank 28.436949 116.764398 72.6006735 1.86094065 -0.136242 6 36 SH12264 12264 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 28.000803 142.970427 28.000803 115.969624 71.9852135 1.857243297 -0.136276 63 4 SH14358 14358 MT ORF9 and ORF10 (hypothetical) ORF9 22.768522 113.362938 22.768522 91.594416 57.181469 1.757255308 -0.136282 9 35 SH1130 1130 Gly4 3' flank 23.417912 96.826426 60.122169 1.77903464 -0.136293 150 90 SH7401 7401 snR69 5' 25.377656 109.240199 67.3089275 1.828072671 -0.136309 52 72 SH7711 7711 snoRNA cluster1 snR77 41.29381 177.404046 41.29381 137.110236 89.202023 1.950374704 -0.13631 87 84 SH3586 3586 Val1 5' flank 23.96247 101.292711 62.6275905 1.796765703 -0.136327 26 21 SH6367 6367 snR43 snR43 76 92 25.61709 110.54688 68.081985 1.83303221 -0.136336 78 27 SH8375 8375 snoRNA cluster 5 5' 21.87428 105.35708 21.87428 84.4828 53.17854 1.72573641 -0.136338 123 14 SH11929 11929 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6531 6544 26.79976 113.303237 70.0514985 1.84541743 -0.13636 80 39 SH12900 12900 MT COX1 intronic/exon2 21.724295 104.112111 21.724295 83.387816 52.5560555 1.720622763 -0.136477 152 11 SH17543 17543 YJL177W_10_90783_91654_INTRON_310_626 intron 24.998784 131.197756 24.998784 107.198972 66.098878 1.820194088 -0.136499 81 2 SH19770 19770 Negative Control 58.282635 163.777707 111.030171 2.045441009 -0.136508 168 73 SH17772 17772 YKL180W_11_109271_110131_INTRON_310_615 intron 24.206299 126.135776 24.206299 102.929477 63.567888 1.803237783 -0.136592 113 14 SH21771 21771 copy of SH13811 21.268151 80.085656 50.6769035 1.70481007 -0.136626 117 41 SH10182 10182 RUF6 RUF6 756 770 25.649384 110.707687 68.1785355 1.833647668 -0.136639 14 84 SH21255 21255 YPL075W spliced 28.03869 116.075647 72.0571685 1.857677192 -0.136643 202 53 SH3210 3210 Thr1 5' flank 26.46827 112.574714 69.521492 1.842119084 -0.136672 9 71 SH13783 13783 MT COB intronic 22.864573 114.278794 22.864573 92.414221 57.639397 1.760719429 -0.136677 82 79 SH7310 7310 snR66 snR66 41 60 27.81911 115.593778 71.706444 1.855558186 -0.13668 161 34 SH12083 12083 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7301 7319 40.825396 136.406398 88.615897 1.947511638 -0.136697 166 82 SH8506 8506 snR19 / U1 RNA U1 26 48 22.551643 89.88526 56.2184515 1.749878879 -0.136745 110 66 SH13825 13825 MT COB Cytbi2 52.647235 206.629384 52.647235 154.982149 103.814692 2.01625882 -0.136765 187 25 SH14048 14048 MT COB Cytbi4 28.179611 143.557491 28.179611 116.37788 72.2787455 1.859010606 -0.136811 17 49 SH6803 6803 snR52 5' 25.100065 107.776374 66.4382195 1.822417985 -0.136832 210 33 SH3917 3917 RNase MRP RNaseMRP 1 18 32.39933 123.05589 77.72761 1.890575314 -0.136854 30 3 SH12188 12188 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7826 7844 24.862682 106.491904 65.677293 1.817415244 -0.136858 164 59 SH565 565 Cys1 3' flank 22.459423 89.156672 55.8080475 1.746696829 -0.136872 139 3 SH14265 14265 MT VAR1 includes 5’ processing site VAR1 23.140189 116.787602 23.140189 94.647413 58.893801 1.770069585 -0.136902 59 34 SH12935 12935 MT COX1 COX1ai2 25.134466 132.103994 25.134466 107.969528 66.551997 1.823161092 -0.136908 123 64 SH20756 20756 YJR094W-A spliced 50.248104 151.226515 100.7373095 2.003190348 -0.136922 149 78 SH113 113 Arg1 5' flank 25.323659 109.000971 67.162315 1.827125657 -0.136946 13 92 SH20980 20980 YML056C spliced 25.043441 107.479059 66.26125 1.821259624 -0.136949 39 87 SH15580 15580 YBR084C-A_2_415219_414144_INTRON_3_508 intron 22.361499 109.745918 22.361499 88.384419 55.372959 1.743297732 -0.136987 127 7 SH9554 9554 RUF3 RUF3 156 170 2391.190982 3382.93207 2887.061526 3.460456039 -0.136988 91 75 SH20731 20731 YJL189W spliced 46.062238 144.656824 95.359531 1.979364106 -0.136993 117 24 SH18396 18396 YMR125W_13_517538_520445_INTRON_26_347 intron 24.343026 127.041137 24.343026 103.698111 64.0205685 1.806319526 -0.137001 131 60 SH1250 1250 Ile2 5' flank 28.919697 117.587253 73.253475 1.864828232 -0.137012 172 2 SH15997 15997 YDL137W_4_216158_217074_INTRON_1_332 5' exon 25.36441 133.594219 25.36441 109.229809 67.2971095 1.827996411 -0.137028 10 48 SH616 616 Gln1 3' flank 27.754053 115.472072 71.6130625 1.854992247 -0.13704 148 71 SH11002 11002 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1896 1912 12275.48386 14214.1198 13244.80183 4.122045465 -0.137107 196 38 SH5974 5974 snR36 snR36 326 343 24.212182 103.004803 63.6084925 1.803515103 -0.137133 75 20 SH15384 15384 YBL027W_2_168385_169338_INTRON_3_386 3' exon 23.514959 120.214648 23.514959 97.699689 60.607324 1.782525109 -0.137143 214 65 SH8342 8342 snoRNA cluster4 snR53 23.914271 123.893159 23.914271 100.978888 62.4465795 1.795508655 -0.137149 121 61 SH7952 7952 snoRNA cluster1 3' 25.143957 132.186863 25.143957 108.042906 66.5934315 1.823431394 -0.137166 175 2 SH7441 7441 snR69 3' 30.124536 119.510537 74.8175365 1.874003404 -0.137217 148 42 SH2516 2516 Pro1 71-72 + 3' flank 71 22.860876 92.440537 57.6507065 1.760804634 -0.137261 81 86 SH13042 13042 MT COX1 COX1ai2 24.082186 125.401174 24.082186 102.318988 63.200587 1.800721112 -0.137291 56 41 SH7581 7581 snR189 5' 23.595535 98.372462 60.9839985 1.785215896 -0.137296 111 95 SH8538 8538 snR19 / U1 RNA U1 186 206 22.479265 89.355439 55.917352 1.747546597 -0.137296 86 6 SH9671 9671 RUF4 RUF4 131 150 21.783728 83.893947 52.8388375 1.722953254 -0.1373 184 69 SH8379 8379 snoRNA cluster 5 5' 21.761605 104.494178 21.761605 83.732573 52.747089 1.722198497 -0.137316 201 93 SH3996 3996 RNase MRP 3' 21.66258 83.006003 52.3342915 1.718786349 -0.137318 78 60 SH6015 6015 snR37 5' - 8 -9 8 29.736504 118.906679 74.3215915 1.871115001 -0.137333 182 67 SH10103 10103 RUF6 RUF6 361 378 21.909366 84.846379 53.3778725 1.72736126 -0.13735 87 18 SH18182 18182 YLR448W_12_1028848_1029762_INTRON_16_399 intron/exon 24.744934 129.64365 24.744934 105.898716 65.321825 1.81505831 -0.137386 30 78 SH21602 21602 copy of SH6673 25.638785 110.72871 68.1837475 1.833680867 -0.137411 197 11 SH4949 4949 snR9 snR9 151 163 35.205122 127.477629 81.3413755 1.910311512 -0.137425 29 83 SH7053 7053 snR62 snR62 56 75 34.359571 126.107456 80.2335135 1.904355811 -0.137438 146 66 SH161 161 Arg2 5' flank 43.409943 140.542261 91.976102 1.963675 -0.137438 183 58 SH11957 11957 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6671 6684 1153.759904 1771.585988 1462.672946 3.165147229 -0.137443 140 18 SH10950 10950 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1636 1656 1508.542081 2252.550776 1880.546429 3.27428406 -0.137446 134 26 SH7905 7905 snoRNA cluster1 intergenic 23.263965 117.960438 23.263965 95.696473 59.480219 1.774372559 -0.137453 102 71 SH10286 10286 RUF7 RUF7 41 58 26.211345 112.040546 69.1259455 1.839641085 -0.137481 56 96 SH1723 1723 Leu7 5' flank 23.687654 99.147279 61.4174665 1.788291898 -0.137499 74 11 SH16243 16243 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 21.267 100.418551 21.267 80.151551 50.7092755 1.705087406 -0.137544 27 68 SH4092 4092 SRP RNA SRP RNA 351 367 22.944107 93.153025 58.048566 1.763791496 -0.137648 35 2 SH1893 1893 Lys1 5' flank 104.729983 238.028599 171.379291 2.233958342 -0.13766 105 7 SH21623 21623 copy of SH7518 22.630412 90.607048 56.61873 1.752960124 -0.137662 147 14 SH14814 14814 "MT tRNAs (Lys, Arg1, Gly)" tRNA Arg1 24.815372 130.12009 24.815372 106.304718 65.560045 1.816639243 -0.137684 146 74 SH10345 10345 RUF7 RUF7 336 353 22.805954 92.034002 57.419978 1.759063022 -0.137689 191 6 SH16800 16800 YGL137W_7_249872_252741_INTRON_19_218 intron 26.62766 138.62326 26.62766 112.9956 69.81163 1.843927778 -0.13769 196 12 SH169 169 Arg2 5' flank 28.532845 117.004043 72.768444 1.861943089 -0.137731 25 45 SH16977 16977 YGR034W_7_555923_556666_INTRON_20_496 intron 29.568307 147.234769 29.568307 118.666462 74.1173845 1.869920085 -0.137785 205 84 SH18605 18605 YNL069C_14_494998_493953_INTRON_29_477 intron 22.485148 110.939563 22.485148 89.454415 55.9697815 1.747953611 -0.13785 32 27 SH18719 18719 YNL130C_14_381156_379555_INTRON_30_470 intron 22.602897 112.008468 22.602897 90.405571 56.504234 1.752080992 -0.137881 27 72 SH17572 17572 YJL189W_10_75932_76473_INTRON_7_392 3' exon 25.227163 132.78322 25.227163 108.556057 66.89161 1.825371649 -0.137883 173 43 SH16663 16663 YFR032C-A_6_223758_223245_INTRON_1_331 intron 159.9589 483.399765 159.9589 324.440865 242.1998825 2.384173928 -0.1379 105 59 SH1317 1317 Ile3 5' flank 23.347531 96.415718 59.8816245 1.777293574 -0.137901 205 100 SH20130 20130 YDL082W spliced 23.797681 100.09511 61.9463955 1.792016041 -0.137918 97 35 SH4643 4643 snR3 snR3 131 145 30.024407 119.395278 74.7098425 1.873377821 -0.137941 103 29 SH12332 12332 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.431544 119.537549 23.431544 97.106005 60.2687745 1.780092361 -0.137992 191 12 SH3378 3378 Thr4 5' flank 24.076844 102.346758 63.211801 1.800798164 -0.137994 133 72 SH13888 13888 MT COB intronic 20.753029 96.286082 20.753029 76.533053 48.643041 1.687020718 -0.137996 128 65 SH5912 5912 snR36 snR36 16 35 139.896566 293.155745 216.5261555 2.335510365 -0.138006 2 68 SH12084 12084 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7306 7324 52.320992 154.572837 103.4469145 2.014717542 -0.138016 151 17 SH18412 18412 YMR125W_13_517538_520445_INTRON_26_347 3' exon 28.507981 144.490145 28.507981 116.982164 72.7450725 1.861803581 -0.138057 121 72 SH9771 9771 RUF4 RUF4 631 648 36.015142 128.836004 82.425573 1.916061975 -0.138066 39 29 SH1599 1599 Leu4 3' flank 25.563581 110.409576 67.9865785 1.832423185 -0.138121 154 44 SH825 825 Glu1 3' flank 22.981249 93.496001 58.238625 1.765211113 -0.13814 69 82 SH19790 19790 Negative Control 26.216947 112.093222 69.1550845 1.839824116 -0.138152 53 28 SH20895 20895 YLR287C-A spliced 24.400033 104.10007 64.2500515 1.80787348 -0.138164 86 41 SH17364 17364 YIL052C_9_257061_256224_INTRON_38_509 intron 87.892022 297.9846 87.892022 211.092578 149.4923 2.174618824 -0.13817 194 45 SH21525 21525 copy of SH3560 28.588586 117.12023 72.854408 1.862455834 -0.13819 144 79 SH19179 19179 YPL079W_16_406631_407534_INTRON_12_432 intron 22.901152 114.764288 22.901152 92.863136 57.882144 1.762544609 -0.138224 198 101 SH10629 10629 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 31 51 23.149577 94.852388 59.0009825 1.770859244 -0.138235 195 99 SH13237 13237 MT COX1 COX1-ai4 23.091511 116.478647 23.091511 94.387136 58.7393235 1.76892894 -0.138241 196 52 SH20396 20396 YFR024C-A spliced 26.310988 112.31326 69.312124 1.840809208 -0.138261 191 53 SH12615 12615 MT_15S MT_15S 23.687304 121.911825 23.687304 99.224521 61.4559125 1.788563671 -0.138286 72 38 SH12185 12185 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7811 7828 51.824796 153.813555 102.8191755 2.012074117 -0.138296 175 29 SH7387 7387 snR68 3' 24.953396 107.109804 66.0316 1.819751821 -0.138365 161 88 SH2578 2578 Pro2 3' flank 22.797304 92.028864 57.413084 1.759010876 -0.138368 130 77 SH18991 18991 YOR122C_15_552886_552297_INTRON_14_222 5' exon 35.947465 163.696958 35.947465 128.749493 82.348479 1.915655582 -0.13842 205 96 SH21331 21331 YPR043W spliced 51.907142 153.953832 102.930487 2.012544028 -0.138421 41 40 SH20866 20866 YLR093C spliced 43.782734 141.204725 92.4937295 1.966112291 -0.138423 33 59 SH17465 17465 YIL148W_9_68708_69528_INTRON_9_442 intron 24.985317 131.273954 24.985317 107.288637 66.136977 1.82044434 -0.138432 159 70 SH19964 19964 YBL059W spliced 24.468252 104.490098 64.479175 1.809419472 -0.138433 150 43 SH10681 10681 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 291 306 1066.518022 1652.057048 1359.287535 3.133311334 -0.138444 150 42 SH14112 14112 MT COB intronic 25.099657 132.011873 25.099657 107.912216 66.5059365 1.822860413 -0.138463 180 46 SH8953 8953 snR17a / U3a U3a 51 68 26.262644 112.216033 69.2393385 1.84035291 -0.138471 4 96 SH18529 18529 YMR225C_13_721402_720959_INTRON_59_205 3' exon 26.078133 136.874772 26.078133 111.796639 68.937386 1.838454812 -0.138478 93 58 SH9507 9507 RUF3 5' 133.885654 283.872931 208.8792925 2.319895388 -0.138491 40 41 SH10399 10399 RUF8 5' 26.845208 113.535323 70.1902655 1.846276885 -0.138518 32 80 SH1422 1422 Leu1 3' flank 25.820656 111.21111 68.515883 1.835791259 -0.138522 172 67 SH16886 16886 YGL189C_7_148970_148233_INTRON_1_368 intron 24.025042 125.06903 24.025042 102.043988 63.034515 1.799578416 -0.138547 202 32 SH18305 18305 YML073C_13_124172_123227_INTRON_16_430 intron 26.562007 138.462006 26.562007 112.899999 69.731003 1.843425912 -0.138568 193 79 SH10034 10034 RUF6 RUF6 16 33 21.65781 83.078301 52.3680555 1.719066448 -0.138598 185 56 SH20790 20790 YKL081W spliced 24.775892 106.169343 65.4726175 1.816059704 -0.138625 79 57 SH12896 12896 MT COX1 intronic 26.039952 136.758709 26.039952 111.718757 68.8793545 1.838089068 -0.138632 157 35 SH4178 4178 telomerase RNA 5' 24.688607 105.698487 65.193547 1.81420461 -0.138645 65 18 SH10630 10630 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 36 56 23.189572 95.216616 59.203094 1.772344404 -0.138673 28 64 SH4455 4455 telomerase RNA 3' 28.962893 117.751591 73.357242 1.865442995 -0.138681 185 11 SH2037 2037 Lys3 3' flank 23.899289 101.013527 62.456408 1.795577003 -0.138681 187 68 SH2057 2057 Lys4 5' flank 23.713952 99.483768 61.59886 1.789572675 -0.138681 166 98 SH2247 2247 Phe1 3' flank 23.373322 96.70234 60.037831 1.778424994 -0.138685 190 61 SH6521 6521 snR46 snR46 96 112 202.425675 390.668416 296.5470455 2.472093602 -0.13872 38 7 SH21886 21886 copy of SH18601 22.588007 90.368472 56.4782395 1.751881151 -0.138761 200 79 SH5469 5469 snR32 snR32 6 24 23.673357 99.160928 61.4171425 1.788289607 -0.138786 155 8 SH1784 1784 Leu8 5' flank 25.069427 107.776531 66.422979 1.822318349 -0.138801 94 12 SH16454 16454 YER074W-A_0_5_307649_INTRON_95_196 intron 22.077756 107.376736 22.077756 86.29898 54.188368 1.733906071 -0.138803 153 98 SH18130 18130 YLR388W_12_898158_898821_INTRON_1_488 3' exon 35.836615 163.432497 35.836615 128.595882 82.2162485 1.914957656 -0.13882 70 81 SH4290 4290 telomerase RNA telomerase 486 505 22.466086 89.392987 55.9295365 1.74764122 -0.138829 189 95 SH11245 11245 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3111 3129 12738.88321 14701.41956 13720.15139 4.137358903 -0.138838 54 29 SH7414 7414 snR69 5' 24.197311 103.063467 63.630389 1.803664578 -0.138848 55 78 SH6043 6043 snR37 snR37 131 152 24.455123 104.453866 64.4544945 1.809253207 -0.138855 166 71 SH5945 5945 snR36 snR36 181 202 30.288919 119.864671 75.076795 1.875505724 -0.13889 150 98 SH12931 12931 MT COX1 COX1ai2 37.586673 167.98967 37.586673 131.402997 84.494835 1.926830162 -0.138926 190 11 SH18450 18450 YMR143W_13_551927_552902_INTRON_25_568 5' exon 39.630455 173.305932 39.630455 134.675477 87.152966 1.940282172 -0.138943 125 28 SH13797 13797 MT COB intronic 26.704861 138.953715 26.704861 113.248854 69.9768575 1.844954435 -0.139008 70 45 SH7309 7309 snR66 snR66 36 53 27.420908 114.853585 71.1372465 1.852097051 -0.139017 134 95 SH9704 9704 RUF4 RUF4 296 311 29.700271 118.948321 74.324296 1.871130804 -0.139053 112 35 SH16994 16994 YGR118W_7_726968_727725_INTRON_66_385 intron 28.477529 144.470182 28.477529 116.992653 72.735091 1.861743987 -0.139116 165 64 SH958 958 Gly1 tRNA 41 53 59.037545 165.197595 112.11757 2.049673676 -0.139157 43 38 SH14191 14191 MT COB Exon6 23.014377 115.874898 23.014377 93.860521 58.437449 1.766691249 -0.13918 62 39 SH5384 5384 snR31 5' - 4 -14 4 43.911624 141.463907 92.6877655 1.967022412 -0.139182 34 86 SH16421 16421 YER056C-A_5_270183_269421_INTRON_38_434 3' exon 70.455096 252.77795 70.455096 183.322854 126.888975 2.103423889 -0.13923 93 44 SH14105 14105 MT COB Cytbi4 21.843835 105.347818 21.843835 84.503983 53.173909 1.725698588 -0.139262 142 12 SH18278 18278 YML056C_13_164176_162194_INTRON_461_868 intron 26.676365 138.876216 26.676365 113.199851 69.938108 1.844713879 -0.139262 47 19 SH6341 6341 snR43 5' 24.750785 106.089514 65.4201495 1.815711532 -0.1393 23 51 SH18894 18894 YOL120C_15_94401_93394_INTRON_113_559 intron 26.939646 139.734877 26.939646 113.795231 70.3674385 1.847371742 -0.139309 193 62 SH4454 4454 telomerase RNA 3' 27.698954 115.494909 71.5969315 1.85489441 -0.139403 144 45 SH15544 15544 YBR078W_2_393082_394818_INTRON_59_388 intron 22.306395 109.474958 22.306395 88.168563 55.237479 1.742233849 -0.139411 151 93 SH6181 6181 snR40 5' 27.484771 115.021532 71.2531515 1.852804078 -0.13944 209 59 SH5385 5385 snR31 5' - 8 -9 8 28.585572 117.186581 72.8860765 1.862644573 -0.139447 45 54 SH5039 5039 snR10 snR10 226 244 27.077861 114.114643 70.596252 1.848781645 -0.139465 140 65 SH4537 4537 U3b (snR17b) U3b 241 257 74.093987 189.149752 131.6218695 2.119328055 -0.139491 178 103 SH1432 1432 Leu2 5' flank 26.613497 113.072771 69.843134 1.844123719 -0.139509 94 32 SH10513 10513 RUF8 RUF8 491 515 22.520571 89.896066 56.2083185 1.749800593 -0.13952 68 17 SH9157 9157 snR7 U5 RNA U5 56 75 21.087854 79.025026 50.05644 1.699459959 -0.139538 140 16 SH2153 2153 Met1 3' flank 51.817482 153.909776 102.863629 2.012261842 -0.139615 90 41 SH13149 13149 MT COX1 intronic 23.839924 123.459014 23.839924 100.61909 62.229507 1.79399636 -0.139619 145 65 SH15801 15801 YDL061C_4_341182_340627_INTRON_1_408 intron 28.859978 145.499701 28.859978 117.639723 73.2498505 1.864806743 -0.139623 60 2 SH12636 12636 MT_15S MT_15S 23.264976 118.186993 23.264976 95.922017 59.5934965 1.775198867 -0.139665 63 98 SH17034 17034 YGR183C_7_859471_859058_INTRON_4_216 intron 22.835793 114.304552 22.835793 92.468759 57.652276 1.760816457 -0.139671 20 89 SH11843 11843 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6101 6114 12718.67952 14688.97746 13703.82849 4.136841914 -0.139681 51 13 SH20006 20006 YBR082C spliced 30.990637 121.001504 75.9960705 1.880791137 -0.1397 96 66 SH16950 16950 YGR027C_7_534779_534126_INTRON_1_312 intron/exon 25.050491 131.801966 25.050491 107.751475 66.400983 1.822174509 -0.139722 78 25 SH17534 17534 YJL177W_10_90783_91654_INTRON_310_626 intron 23.884022 123.881926 23.884022 100.997904 62.440963 1.795469592 -0.139751 12 98 SH8419 8419 snoRNA cluster 5 snR190 26.732715 139.089478 26.732715 113.356763 70.044739 1.845375521 -0.139758 80 16 SH15371 15371 YBL027W_2_168385_169338_INTRON_3_386 intron 25.955491 136.548245 25.955491 111.592754 68.7741225 1.837425058 -0.13976 153 15 SH5424 5424 snR31 snR31 186 202 27.561775 115.217746 71.3897605 1.853635925 -0.139849 73 87 SH18658 18658 YNL112W_14_413636_416278_INTRON_1274_2275 intron 24.624196 129.07448 24.624196 105.450284 65.03724 1.813162103 -0.139857 98 13 SH21583 21583 copy of SH5872 24.320023 103.807466 64.0637445 1.806612319 -0.139867 186 102 SH4461 4461 telomerase RNA 3' 30.291913 119.92831 75.1101115 1.875698407 -0.139907 5 6 SH21270 21270 YPL090C spliced 30.865928 120.821357 75.8436425 1.879919182 -0.139913 28 68 SH1946 1946 Lys2 5' flank 23.046119 94.191664 58.6188915 1.768037602 -0.13998 213 50 SH19696 19696 Negative Control 26.304384 112.402474 69.353429 1.841067939 -0.140008 179 99 SH3784 3784 Val4 3' flank 34.917384 127.172211 81.0447975 1.908725141 -0.140027 77 48 SH8947 8947 snR17a / U3a U3a 21 40 29.562607 118.786283 74.174445 1.870254305 -0.14003 152 57 SH20315 20315 YER044C-A spliced 77.608977 194.839706 136.2243415 2.134254717 -0.140039 20 77 SH17166 17166 YHR016C_8_138446_136872_INTRON_48_215 intron 24.565509 128.713345 24.565509 105.147836 64.8566725 1.811954663 -0.14004 157 45 SH2383 2383 Phe4 5' flank 22.773878 91.99919 57.386534 1.758809995 -0.140043 123 20 SH6728 6728 snR49 3' 26.406106 112.638201 69.5221535 1.842123216 -0.140089 137 19 SH5308 5308 snR30 snR30 391 407 30.820584 120.763359 75.7919715 1.879623204 -0.140121 85 7 SH12492 12492 MT_tRNA Pro 5' 21.781664 104.901947 21.781664 84.120283 52.9509735 1.723873949 -0.14015 210 48 SH8384 8384 snoRNA cluster 5 5'/snR190 26.479094 138.28908 26.479094 112.809986 69.64454 1.842887074 -0.140196 180 30 SH15292 15292 MT 9S rRNA 9S 23.431774 119.769864 23.431774 97.33809 60.384932 1.780928582 -0.1403 53 65 SH3440 3440 Trp1 tRNA 31 48 22.361818 88.694121 55.5279695 1.744511793 -0.140303 94 7 SH19421 19421 YPR132W_16_794960_795762_INTRON_66_430 intron 32.571688 155.106223 32.571688 123.534535 78.0531115 1.89239022 -0.140318 89 84 SH8575 8575 snR19 / U1 RNA U1 371 387 29.728316 119.07091 74.399613 1.871570677 -0.140412 100 25 SH18772 18772 YNL246W_14_185459_186348_INTRON_33_127 3' exon 73.588149 261.019538 73.588149 188.431389 131.009769 2.117303681 -0.140427 34 40 SH9795 9795 RUF4 RUF4 751 768 22.475261 89.61891 56.0470855 1.748553034 -0.140454 30 76 SH13293 13293 MT COX1 COX1-ai5a 26.639557 138.830051 26.639557 113.190494 69.9150255 1.84457052 -0.140489 44 100 SH12788 12788 MT COX1 COX1ai1 26.103711 137.078287 26.103711 111.974576 69.0391435 1.839095395 -0.140492 182 42 SH13308 13308 MT COX1 COX1-ai5a 23.58116 121.1594 23.58116 98.57824 61.0797 1.785896895 -0.140497 205 38 SH20826 20826 YKR094C spliced 28.998409 117.917578 73.4579935 1.866039061 -0.140593 127 18 SH4634 4634 snR3 snR3 86 102 1537.762268 2296.217514 1916.989891 3.282619823 -0.140624 83 46 SH1096 1096 Gly4 5' flank 25.4806 110.174586 67.827593 1.831406406 -0.140643 201 96 SH2580 2580 Pro2 3' flank 23.334299 96.584087 59.959193 1.777855779 -0.140685 129 29 SH18019 18019 YLR306W_12_744151_744851_INTRON_4_137 exon/intron 25.260904 133.242635 25.260904 108.981731 67.1213175 1.826860473 -0.140717 115 74 SH15405 15405 YBL059C-A_2_110500_110086_INTRON_35_119 5' exon 27.945816 143.068784 27.945816 116.122968 72.034392 1.857539895 -0.140734 48 15 SH4438 4438 telomerase RNA telomerase 1226 1242 22.416797 89.175638 55.7962175 1.746604759 -0.14074 113 96 SH17922 17922 YLR078C_12_286560_285737_INTRON_4_92 5' exon 22.148036 108.178928 22.148036 87.030892 54.589464 1.73710883 -0.140743 89 69 SH15401 15401 YBL050W_2_125087_126081_INTRON_31_146 intron 23.226952 117.949471 23.226952 95.722519 59.4747355 1.774332519 -0.140761 76 45 SH21598 21598 copy of SH6474 26.578915 113.070992 69.8249535 1.844010655 -0.140781 15 55 SH4299 4299 telomerase RNA telomerase 531 551 20.539916 75.279279 47.9095975 1.680422522 -0.140797 96 61 SH3114 3114 Ser4 5' flank 25.225963 108.802336 67.0141495 1.82616651 -0.140847 16 87 SH20703 20703 YJL001W spliced 23.791301 100.343621 62.067461 1.79286398 -0.140848 91 48 SH14855 14855 MT tRNA Ser2; tRNA Arg2 5' / tRNA Ser 23.853831 123.718054 23.853831 100.864223 62.359027 1.79489933 -0.140877 138 73 SH17264 17264 YHR101C_8_315970_314876_INTRON_111_197 3' exon 191.463984 564.650221 191.463984 374.186237 282.8251105 2.451517965 -0.140892 141 86 SH2192 2192 Met2 3' flank 24.906757 107.069742 65.9882495 1.819466608 -0.140902 64 37 SH4199 4199 telomerase RNA telomerase 31 48 24.592744 105.368932 64.980838 1.812785308 -0.140932 168 74 SH19920 19920 YAL030W spliced 24.264095 103.593587 63.928841 1.805696831 -0.140947 178 18 SH9379 9379 RUF1 RUF1 471 487 83.315976 204.101031 143.7085035 2.157482467 -0.140983 72 17 SH16810 16810 YGL137W_7_249872_252741_INTRON_19_218 3' exon 23.150699 117.282722 23.150699 95.132023 59.141361 1.771891315 -0.141012 53 102 SH9712 9712 RUF4 RUF4 336 355 22.204717 87.505889 54.855303 1.739218618 -0.141014 192 91 SH19974 19974 YBL087C spliced 22.277389 88.085017 55.181203 1.741791164 -0.141015 98 56 SH20083 20083 YCR097W spliced 21.612167 82.947342 52.2797545 1.71833354 -0.14103 122 23 SH19158 19158 YPL075W_16_412249_415357_INTRON_9_759 intron 29.022288 146.007322 29.022288 117.985034 73.503661 1.866308971 -0.141103 191 13 SH17303 17303 YHR203C_8_505526_504472_INTRON_15_283 exon/intron 32.796802 155.731953 32.796802 123.935151 78.3659765 1.89412755 -0.141133 201 84 SH887 887 Glu3 5' flank 23.414889 97.286529 60.350709 1.780682377 -0.141161 95 35 SH9985 9985 RUF5-1 RUF5-1 731 752 22.161081 87.174942 54.6680115 1.737733277 -0.141188 98 101 SH16501 16501 YER117W_5_396765_397649_INTRON_43_513 intron 48.987237 197.594851 48.987237 149.607614 99.2974255 1.996937989 -0.1412 29 42 SH9548 9548 RUF3 RUF3 126 145 24.774164 106.380977 65.5775705 1.816755323 -0.141275 21 85 SH13779 13779 MT COB intronic 22.465268 111.084484 22.465268 89.619216 56.042242 1.748515501 -0.141316 170 54 SH13774 13774 MT COB intronic 22.480337 111.223526 22.480337 89.743189 56.111763 1.749053914 -0.141343 17 59 SH9928 9928 RUF5-1 RUF5-1 446 463 36.51463 129.854318 83.184474 1.920042275 -0.141346 148 9 SH18866 18866 YNR053C_14_723108_721117_INTRON_811_1341 intron 22.879461 114.869238 22.879461 92.989777 57.934619 1.762938155 -0.141355 84 31 SH18204 18204 YML024W_13_225889_226697_INTRON_4_401 intron 24.118545 125.960387 24.118545 102.841842 63.4801935 1.802638242 -0.141357 186 49 SH4148 4148 SRP RNA SRP RNA 631 643 25.652417 110.994146 68.3232815 1.834568717 -0.141389 24 18 SH13315 13315 MT COX1 COX1-ai5a 24.15449 126.193174 24.15449 103.038684 63.596587 1.803433809 -0.141395 61 71 SH15659 15659 YBR189W_2_604466_605466_INTRON_8_420 intron 24.643735 129.327982 24.643735 105.684247 65.163991 1.814007675 -0.141404 24 72 SH16961 16961 YGR034W_7_555923_556666_INTRON_20_496 5' exon 26.9749 139.976092 26.9749 114.001192 70.488046 1.848115472 -0.141406 109 74 SH13009 13009 MT COX1 COX1ai2 21.988794 106.821576 21.988794 85.832782 53.910788 1.73167568 -0.141416 54 58 SH16827 16827 YGL178W_7_167356_170575_INTRON_4_643 intron 1567.277509 3902.901058 1567.277509 2336.623549 1951.950529 3.290468807 -0.141449 15 28 SH19769 19769 Negative Control 26.716055 113.422661 70.069358 1.845528138 -0.141478 16 28 SH4596 4596 U3b (snR17b) 3' 22.423119 89.299871 55.861495 1.747112554 -0.141527 133 4 SH20760 20760 YJR094W-A spliced 174.41621 347.781153 261.0986815 2.416804679 -0.141527 2 24 SH13596 13596 MT ATP8/AAP1 5' / ATP8 23.84606 123.713488 23.84606 100.867428 62.356744 1.79488343 -0.14153 44 82 SH17773 17773 YKL180W_11_109271_110131_INTRON_310_615 intron 23.964022 124.81244 23.964022 101.848418 62.90622 1.798693589 -0.141536 8 35 SH2315 2315 Phe3 5' flank 27.828046 115.917185 71.8726155 1.856563449 -0.141622 113 91 SH6275 6275 snR42 snR42 156 180 20.819472 77.276875 49.0481735 1.690622839 -0.141629 26 30 SH9218 9218 snR6 / U6 RNA 5' 22.662323 91.245038 56.9536805 1.755521795 -0.14165 120 10 SH18445 18445 YMR142C_13_551206_550205_INTRON_5_406 intron 42.133225 179.937148 42.133225 138.803923 90.468574 1.956497745 -0.141687 161 23 SH738 738 Gln4 5' flank 22.345868 88.696626 55.521247 1.744459212 -0.141707 193 40 SH16861 16861 YGL187C_7_150529_149708_INTRON_1_342 intron 43.983026 184.748718 43.983026 141.765692 92.874359 1.967895829 -0.141765 132 63 SH5856 5856 snR35 snR35 466 485 26.964109 113.99906 70.4815845 1.848075659 -0.141772 198 19 SH12143 12143 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7601 7618 30.202086 119.896041 75.0490635 1.875345277 -0.141777 113 95 SH18741 18741 YNL162W_14_331319_332151_INTRON_5_516 intron 25.665757 135.714102 25.665757 111.048345 68.357051 1.834783319 -0.141788 125 94 SH20839 20839 YLL050C spliced 23.131277 95.055774 59.0935255 1.771539901 -0.141834 90 20 SH17372 17372 YIL052C_9_257061_256224_INTRON_38_509 intron 23.979502 124.994776 23.979502 102.015274 62.997388 1.799322543 -0.141898 191 11 SH5823 5823 snR35 snR35 301 321 21.938632 85.483469 53.7110505 1.730063647 -0.141925 125 88 SH17612 17612 YJR021C_10_469271_468247_INTRON_317_396 5' exon 28.958351 145.891081 28.958351 117.93273 73.4455405 1.865965431 -0.141988 39 74 SH18385 18385 YMR116C_13_500687_499455_INTRON_538_810 intron 25.181221 132.83858 25.181221 108.657359 66.91929 1.825551325 -0.142008 98 27 SH10960 10960 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1686 1706 39248.40918 39647.24985 39447.82952 4.596023113 -0.14202 50 31 SH18950 18950 YOL127W_15_80347_81189_INTRON_14_427 intron 26.756477 139.305184 26.756477 113.548707 70.152592 1.846043722 -0.142056 40 80 SH2906 2906 Pro8 tRNA 51 67 598.247263 991.486488 794.8668755 2.900294399 -0.142114 91 43 SH18966 18966 YOR096W_15_505793_506766_INTRON_145_545 5' exon 25.767062 136.069185 25.767062 111.302123 68.5345925 1.835909835 -0.142144 44 41 SH13517 13517 MT COX1 intronic 24.946986 131.34135 24.946986 107.394364 66.170675 1.820665565 -0.142161 190 20 SH3561 3561 Tyr2 tRNA 76 88 84.403359 205.982862 145.1931105 2.161946009 -0.142185 27 3 SH9679 9679 RUF4 RUF4 171 190 25.193495 108.739646 66.9665705 1.825858058 -0.142188 6 52 SH6835 6835 snR52 81-92 + 3' 81 21.463085 81.953295 51.70819 1.713559336 -0.142192 102 25 SH3733 3733 Val3 3' flank 21.421765 81.654098 51.5379315 1.712126984 -0.142217 112 66 SH20477 20477 YGL189C spliced 38.841726 133.635905 86.2388155 1.935702783 -0.142218 102 18 SH6161 6161 snR39B 3' 23.584983 98.790134 61.1875585 1.786663124 -0.142281 85 31 SH4222 4222 telomerase RNA telomerase 146 158 32.387089 123.364395 77.875742 1.891402198 -0.142288 66 13 SH310 310 Arg4 3' flank 41.851293 138.39541 90.1233515 1.954837334 -0.142301 59 46 SH19910 19910 YAL001C spliced 27.236789 114.643576 70.9401825 1.850892301 -0.142316 138 86 SH14013 14013 MT COB intron/exon4 21.601076 103.577118 21.601076 82.976042 52.288559 1.718406673 -0.142345 193 46 SH3756 3756 Val4 tRNA 6 21 252.44528 469.491136 360.968208 2.557468953 -0.142406 70 94 SH14588 14588 MT 21S rRNA Sce1 endonuc 26.194276 137.489663 26.194276 112.295387 69.2448315 1.840387363 -0.142413 69 35 SH19810 19810 Negative Control 24.791821 106.572029 65.681925 1.817445873 -0.142415 85 72 SH2108 2108 Met1 5' flank 22.566433 90.540887 56.55366 1.752460717 -0.142426 123 16 SH11155 11155 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2661 2676 26.716549 113.483375 70.099962 1.845717783 -0.142467 196 74 SH4397 4397 telomerase RNA telomerase 1021 1040 23.589048 98.847336 61.218192 1.786880499 -0.142516 70 56 SH11046 11046 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2116 2134 28668.33891 30083.48007 29375.90949 4.467991321 -0.14253 98 64 SH18783 18783 YNL301C_14_64561_63569_INTRON_113_544 5' exon 22.986701 115.948815 22.986701 93.962114 58.4744075 1.76696583 -0.142534 173 45 SH5956 5956 snR36 snR36 236 254 22.736589 91.936458 57.3365235 1.758431357 -0.142553 13 27 SH12473 12473 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5S 4397.806039 10189.4592 4397.806039 5792.65316 5095.2296 3.707163759 -0.1426 77 11 SH19840 19840 Negative Control 35.331389 128.01708 81.6742345 1.912085073 -0.142603 18 38 SH16510 16510 YER117W_5_396765_397649_INTRON_43_513 intron 25.209657 133.073942 25.209657 108.864285 67.036971 1.826314383 -0.142615 42 63 SH18297 18297 YML073C_13_124172_123227_INTRON_16_430 intron 25.494658 134.917532 25.494658 110.422874 67.958766 1.832245484 -0.142623 103 96 SH3872 3872 RNaseP RNaseP 326 341 33.755533 125.508309 79.631921 1.901087193 -0.142643 90 40 SH2468 2468 Phe5 3' flank 25.926323 111.698435 68.812379 1.837666573 -0.142669 7 46 SH217 217 Arg3 5' flank 26.004653 111.879099 68.941876 1.838483097 -0.142692 158 41 SH19667 19667 SIR1 2.4 24.673689 105.95442 65.3140545 1.815006644 -0.142701 68 56 SH20106 20106 YDL061C spliced 26.907035 113.932638 70.4198365 1.847695012 -0.142796 38 4 SH10005 10005 RUF5-1 3' 22.71198 91.759585 57.2357825 1.757667625 -0.142802 44 17 SH5937 5937 snR36 snR36 141 153 22.325877 88.640939 55.483408 1.744163129 -0.142834 46 61 SH19201 19201 YPL081W_16_404945_406039_INTRON_8_508 intron 22.86129 114.853229 22.86129 92.991939 57.9266145 1.762878147 -0.142911 7 71 SH4259 4259 telomerase RNA telomerase 331 348 22.718124 91.822389 57.2702565 1.757929128 -0.142934 210 77 SH10277 10277 RUF7 5' - 12 -4 12 23.972744 102.078426 63.025585 1.799516885 -0.143039 151 41 SH18695 18695 YNL112W_14_413636_416278_INTRON_1274_2275 3' exon 25.198806 133.041968 25.198806 108.843162 67.020984 1.8262108 -0.143061 118 64 SH17390 17390 YIL069C_9_232366_231550_INTRON_4_412 intron 48.424789 196.296528 48.424789 148.871739 98.648264 1.994089447 -0.143068 137 31 SH19489 19489 YPT1 24.547728 105.30514 64.926434 1.81242155 -0.143112 185 69 SH13902 13902 MT COB Exon3 21.706665 104.525484 21.706665 83.818819 52.762742 1.722327357 -0.143125 74 77 SH16942 16942 YGR027C_7_534779_534126_INTRON_1_312 intron 22.285015 109.628 22.285015 88.342985 55.314 1.742835065 -0.14315 12 7 SH20413 20413 YFR032C-A spliced 31.401871 121.859708 76.6307895 1.8844033 -0.143227 12 36 SH8291 8291 snoRNA cluster4 intergenic 35.775919 163.562114 35.775919 128.786195 82.281057 1.915299862 -0.143282 50 11 SH16293 16293 YDR450W_4_1359912_1360787_INTRON_48_482 intron 22.681446 113.239209 22.681446 91.557763 57.1196045 1.756785192 -0.143293 43 88 SH13818 13818 MT COB Cytbi2 23.504719 120.739444 23.504719 98.234725 60.869722 1.784401318 -0.143299 135 3 SH414 414 Asn1 3' flank 29.120609 118.269441 73.695025 1.867438171 -0.143319 123 29 SH7288 7288 snR66 5' 26.581255 113.232642 69.9069485 1.844520345 -0.143385 190 22 SH10765 10765 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 711 728 36.69362 130.275155 83.4843875 1.921605265 -0.143386 4 71 SH13012 13012 MT COX1 COX1ai2 24.543912 128.853148 24.543912 105.309236 64.926574 1.812422487 -0.143412 205 77 SH3597 3597 Val1 5' flank - tRNA1 1 23.904096 101.546232 62.725164 1.797441805 -0.143423 205 73 SH16526 16526 YER131W_5_423587_424307_INTRON_1_361 intron 25.230144 133.277024 25.230144 109.04688 67.138512 1.826971712 -0.143442 189 73 SH5644 5644 snR34 snR34 141 162 21.465647 82.07547 51.7705585 1.71408285 -0.143443 31 17 SH16216 16216 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 23.646758 122.065429 23.646758 99.418671 61.5327145 1.789106074 -0.143465 68 52 SH17446 17446 YIL148W_9_68708_69528_INTRON_9_442 5' exon 46.821035 192.180996 46.821035 146.359961 96.590498 1.984934405 -0.143484 138 78 SH16409 16409 YER056C-A_5_270183_269421_INTRON_38_434 intron 24.327079 127.469887 24.327079 104.142808 64.2349435 1.807771346 -0.143511 100 31 SH14637 14637 MT 21S rRNA Sce1 endonuc 23.810753 123.600285 23.810753 100.789532 62.3001425 1.79448904 -0.143608 37 103 SH515 515 Asp2 3' flank 23.975171 102.159592 63.0673815 1.7998048 -0.143621 136 87 SH11184 11184 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2806 2819 77.338401 194.807746 136.0730735 2.133772194 -0.143655 60 92 SH17493 17493 YJL041W_10_365480_368069_INTRON_2_119 exon/intron 23.207753 118.060323 23.207753 95.85257 59.5301615 1.774737061 -0.143664 130 26 SH3507 3507 Tyr1 tRNA 76 88 95.014634 223.265783 159.1402085 2.201779923 -0.143706 204 82 SH17450 17450 YIL148W_9_68708_69528_INTRON_9_442 intron 32.490891 155.106165 32.490891 123.615274 78.0530825 1.892390059 -0.143744 20 67 SH20613 20613 YHR079C-A spliced 34.897029 127.377098 81.1370635 1.909219286 -0.14375 111 84 SH20766 20766 YJR145C spliced 25.162111 108.703647 66.932879 1.825639506 -0.143773 153 20 SH14060 14060 MT COB Cytbi4 22.243451 109.316901 22.243451 88.07345 55.1584505 1.741612058 -0.143831 176 101 SH14886 14886 MT tRNA Ala 3' 22.2522 109.395759 22.2522 88.143559 55.1978795 1.741922394 -0.143833 171 26 SH1637 1637 Leu5 tRNA-intron 51 67 24.403174 104.581936 64.492555 1.809509583 -0.143842 181 76 SH5892 5892 snR36 5' 25.753775 111.377604 68.5656895 1.836106848 -0.143937 175 80 SH9192 9192 snR7 U5 RNA 3' 21.89457 85.325313 53.6099415 1.729245333 -0.144034 33 69 SH2664 2664 Pro4 5' flank - tRNA2 2 25.544268 110.817455 68.1808615 1.833662484 -0.144038 205 45 SH10545 10545 RUF8 RUF8 651 673 22.26835 88.294905 55.2816275 1.74258082 -0.144073 118 62 SH20251 20251 YDR381C-A spliced 23.412789 97.564718 60.4887535 1.781674635 -0.144115 104 37 SH16438 16438 YER074W_5_306319_307192_INTRON_4_469 intron 23.610388 121.796141 23.610388 99.185753 61.3980705 1.788154723 -0.144119 210 81 SH9977 9977 RUF5-1 RUF5-1 691 708 26.212814 112.444414 69.328614 1.840912518 -0.144203 16 24 SH18243 18243 YML026C_13_223828_222987_INTRON_48_448 3' exon 30.921573 151.085506 30.921573 121.163933 76.042753 1.881057831 -0.144297 92 37 SH3795 3795 RNaseP 5' flank 24.200891 103.529714 63.8653025 1.805264974 -0.144363 172 55 SH4386 4386 telomerase RNA telomerase 966 985 26.635124 113.413816 70.02447 1.84524983 -0.144369 118 57 SH1971 1971 Lys2 tRNA 56 68 29.25631 118.547783 73.9020465 1.868656465 -0.144383 203 75 SH9678 9678 RUF4 RUF4 166 185 25.861155 111.651461 68.756308 1.837312548 -0.144397 88 48 SH19876 19876 Negative Control 23.678061 99.777379 61.72772 1.790480236 -0.144448 185 81 SH15284 15284 MT 9S rRNA 9S 32.248946 154.526631 32.248946 123.277685 77.7633155 1.890774769 -0.144451 6 16 SH2118 2118 Met1 5' flank 23.249362 96.270456 59.759909 1.776409927 -0.144482 12 73 SH13817 13817 MT COB Cytbi2 23.126336 117.402954 23.126336 95.276618 59.201477 1.772332542 -0.144504 154 6 SH20651 20651 YIL004C spliced 43.997771 141.991175 92.994473 1.968457138 -0.144524 15 65 SH9051 9051 snR17a / U3a 3' 24.562886 105.508427 65.0356565 1.813151529 -0.144575 48 57 SH11600 11600 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4886 4906 587.605213 977.55494 782.5800765 2.893528787 -0.144595 120 66 SH9429 9429 RUF2 5' - 8 -14 8 29.020185 118.185162 73.6026735 1.86689359 -0.144668 168 50 SH3580 3580 Tyr2 3' flank 24.432661 104.81064 64.6216505 1.810378046 -0.144681 184 19 SH15282 15282 MT 9S rRNA 9S 46.842283 192.329015 46.842283 146.486732 96.6645075 1.985267043 -0.144693 96 21 SH202 202 Arg2 3' flank 45.328837 144.094624 94.7117305 1.976403772 -0.144694 126 24 SH20891 20891 YLR287C-A spliced 32.482704 123.661759 78.0722315 1.892496593 -0.144725 127 65 SH2059 2059 Lys4 5' flank 58.698804 165.163668 111.931236 2.048951299 -0.144734 61 13 SH19555 19555 CBP1 2.2 23.83179 101.08963 62.46071 1.795606917 -0.144819 147 52 SH13170 13170 MT COX1 intronic 24.526093 128.86885 24.526093 105.342757 64.934425 1.812474999 -0.144987 156 93 SH18240 18240 YML026C_13_223828_222987_INTRON_48_448 intron 25.399132 134.505397 25.399132 110.106265 67.7526985 1.830926597 -0.145011 191 60 SH732 732 Gln4 5' flank 25.339024 109.778927 67.5589755 1.829683055 -0.145033 100 43 SH15479 15479 YBL091C-A_2_46858_46559_INTRON_35_122 3' exon 28.133418 143.900399 28.133418 116.766981 72.4501995 1.860039586 -0.145056 143 57 SH14234 14234 MT ATP9 3' 22.731094 113.865597 22.731094 92.134503 57.4327985 1.759159978 -0.145076 74 10 SH2250 2250 Phe1 3' flank 23.13433 95.398795 59.2665625 1.772809739 -0.145093 209 103 SH3532 3532 Tyr2 5' flank 25.881253 111.739807 68.81053 1.837654903 -0.145109 169 3 SH5228 5228 snR30 5' - 10 -9 10 31.182337 121.622639 76.402488 1.883107501 -0.145156 114 45 SH10163 10163 RUF6 RUF6 661 675 25.290567 109.524735 67.407651 1.828709193 -0.145162 27 14 SH17107 17107 YHR001W-A_8_107819_108115_INTRON_7_69 5' exon 24.279258 127.299605 24.279258 104.020347 64.1498025 1.807195324 -0.145181 53 22 SH19961 19961 YBL059W spliced 41.51548 138.079235 89.7973575 1.953263557 -0.145221 190 39 SH11668 11668 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5226 5239 28.521657 117.411373 72.966515 1.863123604 -0.14524 72 54 SH4025 4025 SRP RNA SRP RNA 16 31 25.366885 109.95162 67.6592525 1.830327195 -0.145266 141 66 SH10196 10196 RUF6 RUF6 826 845 23.213477 96.060897 59.637187 1.77551715 -0.145309 21 40 SH17542 17542 YJL177W_10_90783_91654_INTRON_310_626 intron 40.594039 176.239103 40.594039 136.645064 88.6195515 1.947529548 -0.145362 100 62 SH6093 6093 snR37 381-386 + 3' 381 21.068877 79.357876 50.2133765 1.700819426 -0.14541 166 58 SH4539 4539 U3b (snR17b) U3b 251 270 24.46859 105.071183 64.7698865 1.811373136 -0.145478 177 31 SH15950 15950 YDL125C_4_239605_239018_INTRON_98_208 3' exon 23.151356 117.725877 23.151356 95.574521 59.3629385 1.773515391 -0.145481 196 62 SH13394 13394 MT COX1 intronic 23.897755 124.606059 23.897755 101.708304 62.8030295 1.797980594 -0.145485 27 65 SH2159 2159 Met2 5' flank 24.777045 106.753579 65.765312 1.817996885 -0.145544 112 34 SH7267 7267 snR65 3' 20.839856 77.728422 49.284139 1.692707174 -0.14555 153 28 SH14001 14001 MT COB intronic 25.198521 133.253695 25.198521 109.055174 67.1268475 1.826896252 -0.145559 162 22 SH16480 16480 YER102W_5_362729_363698_INTRON_1_360 intron 26.200206 137.697477 26.200206 112.497271 69.3487385 1.841038565 -0.14557 40 61 SH8510 8510 snR19 / U1 RNA U1 46 65 23.395593 97.575898 60.4857455 1.781653038 -0.145631 137 58 SH15419 15419 YBL059W_2_110555_111205_INTRON_287_355 intron/exon 22.336678 110.327123 22.336678 88.990445 55.6635615 1.74557099 -0.145662 17 69 SH7887 7887 snoRNA cluster1 snR73/intergenic 22.788939 114.454602 22.788939 92.665663 57.727301 1.761381253 -0.145667 136 97 SH4237 4237 telomerase RNA telomerase 221 238 24.204465 103.656786 63.9306255 1.805708954 -0.145688 98 66 SH10081 10081 RUF6 RUF6 251 270 38.318334 133.026157 85.6722455 1.93284015 -0.145718 161 58 SH16170 16170 YDR139C_4_733917_733611_INTRON_150_222 intron/exon 24.618374 129.523061 24.618374 105.904687 65.2615305 1.814657255 -0.145718 212 23 SH6444 6444 snR45 snR45 66 78 25.31861 109.728382 67.523496 1.82945492 -0.145744 102 66 SH13536 13536 MT COX1 intronic 22.702531 113.669818 22.702531 91.967287 57.334909 1.758419128 -0.145766 81 39 SH10215 10215 RUF6 RUF6 921 938 24.735249 106.545234 65.6402415 1.81717017 -0.145774 101 26 SH7737 7737 snoRNA cluster1 intergenic 23.56772 121.571143 23.56772 99.003423 61.2855715 1.78735824 -0.145782 143 98 SH10808 10808 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 926 944 7042.63837 8774.365261 7908.501816 3.898094219 -0.145964 123 66 SH18039 18039 YLR333C_12_796335_795573_INTRON_1_423 intron 40.778573 176.758786 40.778573 136.980213 88.879393 1.94880108 -0.146002 109 64 SH2575 2575 Pro2 3' flank 22.722397 92.153016 57.4377065 1.75919709 -0.146007 128 36 SH14050 14050 MT COB Cytbi4 25.026884 132.18457 25.026884 108.157686 66.592285 1.823423917 -0.146037 162 76 SH16358 16358 YEL012W_5_131772_132551_INTRON_6_128 5' exon 22.502698 111.871226 22.502698 90.368528 56.435613 1.751553247 -0.146062 99 14 SH6060 6060 snR37 snR37 216 235 26.268445 112.683169 69.475807 1.8418336 -0.146076 85 39 SH9329 9329 RUF1 RUF1 221 237 45.991748 145.230307 95.6110275 1.980507985 -0.146107 118 79 SH14825 14825 "MT tRNAs (Lys, Arg1, Gly)" tRNA Gly 23.401004 120.075686 23.401004 97.674682 60.537843 1.782026943 -0.146175 14 91 SH19309 19309 YPL198W_16_173151_174701_INTRON_12_420 intron 23.268938 118.869134 23.268938 96.600196 59.934567 1.777677372 -0.146207 44 81 SH21540 21540 copy of SH4150 40.208162 136.094514 88.151338 1.945228909 -0.14622 100 54 SH16857 16857 YGL187C_7_150529_149708_INTRON_1_342 5' exon 23.854058 124.278548 23.854058 101.42449 62.639274 1.796846716 -0.146258 127 51 SH14209 14209 MT ATP9 5' 22.462614 111.525534 22.462614 90.06292 56.262767 1.750221087 -0.146264 128 27 SH10409 10409 RUF8 5' 25.141722 108.805477 66.9735995 1.825903641 -0.146273 109 77 SH10056 10056 RUF6 RUF6 126 143 21.935476 85.854288 53.894882 1.731547525 -0.14634 78 77 SH15072 15072 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.0944 126.212427 24.0944 103.118027 63.6062135 1.803499543 -0.146388 41 7 SH18553 18553 YMR230W_13_732413_733140_INTRON_53_462 intron 24.886902 131.311999 24.886902 107.425097 66.1559995 1.820569235 -0.14641 207 78 SH21689 21689 copy of SH10449 24.010622 102.668586 63.339604 1.801675344 -0.146432 165 85 SH19264 19264 YPL143W_16_282121_282969_INTRON_20_544 intron 26.527296 138.821274 26.527296 113.293978 69.910637 1.844543259 -0.14644 128 15 SH13425 13425 MT COX1 intronic 21.476838 102.883198 21.476838 82.40636 51.941599 1.715515315 -0.146443 55 5 SH2217 2217 Phe1 5' flank 38.609036 133.547989 86.0785125 1.934894753 -0.146455 160 97 SH1726 1726 Leu7 5' flank 24.370733 104.620875 64.495804 1.809531461 -0.14646 180 8 SH14258 14258 MT VAR1 includes 5’ processing site 5' 23.638057 122.296867 23.638057 99.65881 61.6484335 1.789922046 -0.146519 206 61 SH7810 7810 snoRNA cluster1 intergenic 24.186556 126.814964 24.186556 103.628408 63.907482 1.805551706 -0.146532 105 60 SH3298 3298 Thr2 3' flank 21.294314 81.081892 51.188103 1.709169035 -0.146551 54 42 SH15824 15824 YDL064W_4_337486_338069_INTRON_39_148 intron 26.001012 137.101484 26.001012 112.100472 69.050742 1.83916835 -0.146557 51 67 SH19937 19937 YBL027W spliced 66.002863 176.91065 121.4567565 2.084421679 -0.146571 147 3 SH5441 5441 snR31 3' 24.531251 105.501901 65.016576 1.813024094 -0.146572 111 64 SH1926 1926 Lys1 3' flank 30.029719 119.906524 74.9681215 1.874876629 -0.146634 50 35 SH20798 20798 YKL157W spliced 26.625613 113.530487 70.07805 1.845582009 -0.146664 96 34 SH9602 9602 RUF3 RUF3 396 413 310.52787 561.833475 436.1806725 2.639666418 -0.146676 90 88 SH8339 8339 snoRNA cluster4 snR53 22.308565 110.167625 22.308565 88.85906 55.5838125 1.744948332 -0.14668 187 72 SH9242 9242 snR6 / U6 RNA U6 81 98 69.062682 181.852862 125.457772 2.098497571 -0.146686 86 93 SH15290 15290 MT 9S rRNA 9S 21.995465 107.355916 21.995465 86.360451 54.177958 1.733822632 -0.146689 143 50 SH15633 15633 YBR186W_2_600511_602318_INTRON_1552_1664 5' exon 22.275702 109.872759 22.275702 88.597057 55.4363795 1.743794859 -0.146702 178 51 SH18271 18271 YML056C_13_164176_162194_INTRON_461_868 intron 24.820751 130.913382 24.820751 107.092631 65.956691 1.819258859 -0.146747 111 66 SH12962 12962 MT COX1 COX1ai2 26.02407 137.194237 26.02407 112.170167 69.0971185 1.839459937 -0.14684 103 70 SH19396 19396 YPR063C_16_678315_677807_INTRON_42_127 5' exon 24.358772 127.94651 24.358772 104.587738 64.473255 1.809379597 -0.146847 105 77 SH20068 20068 YBR230C spliced 24.013563 102.719319 63.366441 1.801859315 -0.146865 190 75 SH15744 15744 YCR028C-A_3_173432_172942_INTRON_243_325 3' exon 25.413308 134.759072 25.413308 110.345764 67.879536 1.831738865 -0.146881 62 20 SH2396 2396 Phe4 tRNA-exon/intron 31 48 25.42313 110.401884 67.912507 1.831949763 -0.146907 68 97 SH3993 3993 RNase MRP 3' 21.805757 84.883903 53.34483 1.727092335 -0.146919 166 35 SH13966 13966 MT COB Cytbi3 22.529321 112.197747 22.529321 90.668426 56.5988735 1.752807787 -0.146948 134 80 SH2561 2561 Pro2 tRNA-intron 41 58 23.844022 101.417888 62.630955 1.796789034 -0.146998 202 95 SH20018 20018 YBR089C-A spliced 25.470689 110.671065 68.070877 1.832961346 -0.147 207 19 SH10642 10642 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 96 117 40.116074 136.004051 88.0600625 1.944778989 -0.147024 74 19 SH20360 20360 YER131W spliced 54.842336 159.255022 107.048679 2.029581312 -0.147029 145 37 SH20548 20548 YGR225W spliced 25.237366 109.394443 67.3159045 1.828117686 -0.147037 93 78 SH14989 14989 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 24.724516 130.318711 24.724516 106.594195 65.6593555 1.817296615 -0.147059 181 70 SH17956 17956 YLR185W_12_522665_523290_INTRON_8_366 intron 40.027383 174.893632 40.027383 135.866249 87.946816 1.944220121 -0.147069 130 40 SH4432 4432 telomerase RNA telomerase 1196 1210 25.135954 108.845189 66.9905715 1.826013683 -0.147107 176 62 SH11625 11625 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5011 5024 56.703091 162.22054 109.4618155 2.039262647 -0.147274 163 62 SH18469 18469 YMR143W_13_551927_552902_INTRON_25_568 intron 26.512956 138.824718 26.512956 113.311762 69.912359 1.844553956 -0.147277 73 92 SH6784 6784 snR50 3' 22.730498 92.349522 57.54001 1.759969933 -0.147355 170 97 SH9382 9382 RUF1 RUF1 486 502 218.650466 418.088067 318.3692665 2.502931137 -0.147394 158 12 SH2017 2017 Lys3 tRNA-exon/intron 31 47 22.712045 92.2047 57.4583725 1.759353321 -0.147422 66 69 SH21011 21011 YML124C spliced 23.552791 99.047523 61.300157 1.787461587 -0.147427 40 50 SH14216 14216 MT ATP9 ATP9 32.533972 155.44122 32.533972 123.907248 78.22061 1.893321198 -0.147449 113 56 SH9058 9058 snR14 / U4 RNA 5' 28.446733 117.415065 72.930899 1.862911567 -0.147454 172 73 SH1944 1944 Lys2 5' flank 21.999591 86.464396 54.2319935 1.734255569 -0.147477 42 81 SH19262 19262 YPL143W_16_282121_282969_INTRON_20_544 intron 32.64195 155.721441 32.64195 124.079491 78.3607205 1.894098421 -0.147497 56 99 SH20903 20903 YLR316C spliced 27.637708 115.857449 71.7475785 1.855807248 -0.147524 22 84 SH19044 19044 YOR234C_15_779404_778554_INTRON_20_546 intron 39.206921 172.79296 39.206921 134.586039 86.89648 1.939002184 -0.147527 147 82 SH20893 20893 YLR287C-A spliced 27.389921 115.304463 71.347192 1.853376885 -0.14753 162 98 SH9149 9149 snR7 U5 RNA U5 16 30 6874.975288 8599.804985 7737.390137 3.888594496 -0.147589 179 76 SH19108 19108 YOR312C_15_901173_900242_INTRON_2_427 intron 23.748496 123.433435 23.748496 100.684939 62.2167175 1.793907094 -0.147598 27 102 SH19689 19689 Negative Control 24.466448 105.23807 64.852259 1.811925108 -0.147642 13 96 SH15913 15913 YDL083C_4_307788_306925_INTRON_25_456 intron 29.681316 148.09477 29.681316 119.413454 74.547385 1.872432414 -0.147647 103 52 SH14150 14150 MT COB intronic 25.071142 132.6101 25.071142 108.538958 66.80505 1.824809293 -0.147675 187 33 SH16315 16315 YDR471W_4_1401759_1402553_INTRON_32_415 intron 26.57205 139.042717 26.57205 113.470667 70.0213585 1.845230532 -0.147688 146 101 SH834 834 Glu2 5' flank 21.945884 86.060321 54.0031025 1.732418711 -0.147716 48 45 SH13775 13775 MT COB intronic 24.758877 130.597129 24.758877 106.838252 65.7985645 1.818216419 -0.147736 11 99 SH17272 17272 YHR123W_8_354817_356083_INTRON_51_141 intron/exon 47.91583 195.351244 47.91583 148.435414 98.175622 1.992003661 -0.147785 175 32 SH13798 13798 MT COB intronic 25.159219 133.194104 25.159219 109.034885 67.097052 1.826703439 -0.147836 42 29 SH19053 19053 YOR234C_15_779404_778554_INTRON_20_546 intron 29.922405 148.729461 29.922405 119.807056 74.8647305 1.874277266 -0.147843 84 59 SH12177 12177 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7771 7790 26.520629 113.36489 69.9427595 1.844742763 -0.14787 7 63 SH1940 1940 Lys2 5' flank 24.105442 103.300511 63.7029765 1.804159725 -0.147904 185 12 SH19690 19690 Negative Control 23.814794 101.270632 62.542713 1.796176716 -0.147926 60 23 SH11896 11896 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6366 6381 200.331149 389.659081 294.995115 2.469814824 -0.147947 91 16 SH1943 1943 Lys2 5' flank 21.772549 84.718343 53.245446 1.726282469 -0.147964 125 83 SH6536 6536 snR46 snR46 171 190 21.910544 85.803821 53.8571825 1.73124363 -0.147972 173 51 SH3758 3758 Val4 tRNA 16 30 24.692782 106.498135 65.5954585 1.816873772 -0.147979 181 23 SH15518 15518 YBR048W_2_332790_333771_INTRON_46_556 intron 25.221162 133.608232 25.221162 109.38707 67.304116 1.828041624 -0.147985 179 92 SH20177 20177 YDL189W spliced 38.795698 133.955082 86.37539 1.936390021 -0.147997 49 72 SH10162 10162 RUF6 RUF6 656 670 25.213688 109.350572 67.28213 1.827899732 -0.148037 212 77 SH4843 4843 snR8 5' - 15 15 27.907108 116.488693 72.1979005 1.858524569 -0.148046 145 58 SH19000 19000 YOR122C_15_552886_552297_INTRON_14_222 intron 23.879186 124.701701 23.879186 101.822515 62.8508505 1.798311159 -0.148064 159 33 SH13585 13585 MT COX1 exon 6 / 3' 22.566592 112.64769 22.566592 91.081098 56.823845 1.754530617 -0.148099 31 27 SH5871 5871 snR35 3' 24.554822 105.759827 65.1573245 1.813963243 -0.148137 156 98 SH15713 15713 YBR220C_2_663261_662457_INTRON_302_722 intron 29.200985 146.880796 29.200985 118.679811 73.940398 1.868881784 -0.148231 61 68 SH9276 9276 RUF1 5' 49.673655 151.235085 100.45437 2.001968834 -0.148261 93 38 SH18050 18050 YLR333C_12_796335_795573_INTRON_1_423 intron 22.025401 107.766874 22.025401 86.741473 54.383437 1.735466651 -0.148273 141 60 SH11053 11053 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2151 2164 33549.62188 34677.35597 34113.48892 4.532926139 -0.148302 45 31 SH13003 13003 MT COX1 COX1ai2 25.340355 134.415227 25.340355 110.074872 67.7076135 1.830637506 -0.148379 122 37 SH18035 18035 YLR316C_12_766358_765266_INTRON_230_285 3' exon 28.183027 144.220907 28.183027 117.03788 72.6104535 1.860999149 -0.148409 152 98 SH19537 19537 CBP1 1.2 25.203929 109.34054 67.2722345 1.827835853 -0.148544 64 89 SH4885 4885 snR8 3' 21.962787 86.269998 54.1163925 1.733328838 -0.148556 82 62 SH5153 5153 snR13 5' 574.952285 961.523819 768.238052 2.885495815 -0.148567 83 42 SH5037 5037 snR10 snR10 216 230 104.386617 239.015362 171.7009895 2.234772798 -0.148582 55 80 SH14839 14839 MT tRNA Asp tRNA Asp 28.429214 144.881002 28.429214 117.451788 72.940501 1.862968742 -0.148604 63 75 SH13684 13684 MT ORF 5 (hypothetical) ORF5 22.548439 112.530076 22.548439 90.981637 56.765038 1.754080933 -0.148607 127 59 SH7688 7688 snoRNA cluster1 intergenic 22.20188 109.390147 22.20188 88.188267 55.1950735 1.741900316 -0.148686 179 59 SH7586 7586 snR189 snR189 1 22 46.88068 146.858152 96.869416 1.986186681 -0.148726 212 98 SH18074 18074 YLR344W_12_819312_820142_INTRON_20_466 intron 26.259239 138.08055 26.259239 112.821311 69.540275 1.842236404 -0.148735 82 9 SH21716 21716 copy of SH11501 23.757828 100.883917 62.3208725 1.794633525 -0.148772 127 71 SH9846 9846 RUF5-1 RUF5-1 36 57 23.893038 102.016017 62.9545275 1.799026969 -0.148806 178 45 SH15050 15050 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.998402 116.664653 22.998402 94.666251 58.8323265 1.769616023 -0.148839 112 62 SH13160 13160 MT COX1 intronic 26.284591 138.175822 26.284591 112.891231 69.587911 1.842533799 -0.148936 139 98 SH18734 18734 YNL162W_14_331319_332151_INTRON_5_516 5' exon 24.52213 129.170374 24.52213 105.648244 65.085187 1.813482157 -0.148938 38 19 SH16189 16189 YDR367W_4_1212837_1213603_INTRON_31_131 3' exon 24.529882 129.222555 24.529882 105.692673 65.1112775 1.813656216 -0.148965 200 43 SH19758 19758 Negative Control 24.496764 105.515142 65.005953 1.81295313 -0.148999 162 14 SH16875 16875 YGL187C_7_150529_149708_INTRON_1_342 intron 22.370523 110.946066 22.370523 89.575543 55.973033 1.747978841 -0.149005 181 19 SH8051 8051 snoRNA cluster 2 intergenic 25.143758 133.193985 25.143758 109.050227 67.0969925 1.826703054 -0.149006 86 24 SH443 443 Asp1 tRNA 36 48 32.104044 123.326037 77.7150405 1.890505078 -0.149044 106 78 SH8213 8213 snoRNA cluster 3; snR51 22.094523 108.46215 22.094523 87.367627 54.731075 1.738233978 -0.149102 142 30 SH4899 4899 snR9 5' 4142.899975 5520.610414 4831.755195 3.684104922 -0.149114 169 6 SH14149 14149 MT COB intronic 22.672874 113.726856 22.672874 92.053982 57.363428 1.758635097 -0.149189 137 5 SH5487 5487 snR32 snR32 96 112 106.764631 242.908831 174.836731 2.242632678 -0.149204 90 90 SH14155 14155 MT COB intronic 22.284325 110.184031 22.284325 88.899706 55.5920155 1.74501242 -0.149214 88 102 SH14287 14287 MT VAR1 includes 5’ processing site VAR1 21.685354 104.862968 21.685354 84.177614 52.931484 1.72371407 -0.149219 7 62 SH10540 10540 RUF8 RUF8 626 642 24.223256 104.046608 64.134932 1.807094639 -0.149222 22 46 SH20104 20104 YDL061C spliced 25.496292 111.006369 68.2513305 1.834111122 -0.149237 105 13 SH14467 14467 MT 21S rRNA 21S rRNA3 22.14646 108.942572 22.14646 87.796112 54.971286 1.740135897 -0.149249 204 17 SH17520 17520 YJL136C_10_156971_156248_INTRON_25_484 intron 27.084485 140.808496 27.084485 114.724011 70.904248 1.850672255 -0.149253 16 65 SH8973 8973 snR17a / U3a U3a 151 169 22.50821 90.717362 56.612786 1.752914528 -0.149272 147 36 SH13930 13930 MT COB Cytbi3 23.34873 119.910447 23.34873 97.561717 60.4552235 1.781433831 -0.14932 201 80 SH11803 11803 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5901 5916 344.473594 615.627384 480.050489 2.681286916 -0.149362 189 21 SH17620 17620 YJR094W-A_10_608000_608553_INTRON_3_277 5' exon 23.60429 122.275627 23.60429 99.671337 61.6378135 1.789847224 -0.149373 23 24 SH4247 4247 telomerase RNA telomerase 271 290 21.000637 79.185579 50.093108 1.699777978 -0.149401 18 94 SH8074 8074 snoRNA cluster 2 snR61 35.615947 163.538602 35.615947 128.922655 82.269301 1.915237807 -0.14941 173 54 SH5493 5493 snR32 snR32 126 138 37.06622 131.270348 84.168284 1.925148473 -0.149439 63 64 SH21538 21538 copy of SH3944 21.821625 85.233592 53.5276085 1.72857784 -0.149445 151 18 SH10427 10427 RUF8 RUF8 61 82 22.322222 89.230067 55.7761445 1.746448491 -0.149481 97 82 SH3099 3099 Ser4 5' flank 24.487396 105.50617 64.996783 1.812891862 -0.149506 27 30 SH18525 18525 YMR225C_13_721402_720959_INTRON_59_205 intron 39.340064 173.278203 39.340064 134.938139 87.1391015 1.940213078 -0.149541 139 8 SH3671 3671 Val2 3' flank 21.891928 85.798127 53.8450275 1.731145603 -0.149549 191 61 SH10617 10617 RUF8 3' 33.715656 125.871918 79.793787 1.901969077 -0.149549 70 41 SH21330 21330 YPR043W spliced 64.547761 174.904382 119.7260715 2.078188732 -0.149566 9 31 SH19265 19265 YPL143W_16_282121_282969_INTRON_20_544 intron 25.716368 136.346345 25.716368 111.629977 68.6731725 1.836787111 -0.149657 54 66 SH13891 13891 MT COB intronic 25.639286 136.091233 25.639286 111.451947 68.5456165 1.835979687 -0.149657 16 99 SH20345 20345 YER093C-A spliced 31.390919 122.226717 76.808818 1.885411082 -0.149665 73 93 SH3198 3198 Ser5 3' flank 24.591288 106.087949 65.3396185 1.815176594 -0.149695 136 91 SH6671 6671 snR48 3' 22.633852 91.783564 57.208708 1.75746214 -0.1497 49 64 SH4726 4726 snR4 snR4 166 184 33.808174 126.025395 79.9167845 1.902638001 -0.149732 182 15 SH4469 4469 U3b (snR17b) 5' 24.358393 104.8235 64.5909465 1.810171649 -0.149742 107 31 SH3705 3705 Val3 tRNA 6 22 278.619573 512.906495 395.763034 2.597435227 -0.149761 18 18 SH4027 4027 SRP RNA SRP RNA 26 42 25.160576 109.207706 67.184141 1.827266769 -0.149768 145 59 SH12304 12304 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.004192 137.312842 26.004192 112.30865 69.156421 1.839832509 -0.14993 5 88 SH8289 8289 snoRNA cluster4 intergenic 23.557981 121.907308 23.557981 99.349327 61.453654 1.788547711 -0.149971 41 10 SH16871 16871 YGL187C_7_150529_149708_INTRON_1_342 intron 24.545678 129.412633 24.545678 105.866955 65.2063165 1.814289668 -0.150028 109 83 SH16101 16101 YDR059C_4_569765_569229_INTRON_48_137 intron 19.931478 90.750778 19.931478 71.8193 45.875389 1.66157976 -0.150029 48 77 SH7510 7510 snR71 3' 23.61395 99.818792 61.716371 1.790400381 -0.150032 174 93 SH13357 13357 MT COX1 intronic 23.864216 124.768023 23.864216 101.903807 62.8840115 1.798540238 -0.15004 46 29 SH13252 13252 MT COX1 COX1-ai4 25.316549 134.404464 25.316549 110.087915 67.702232 1.830602987 -0.150044 193 49 SH2621 2621 Pro3 tRNA-intron/exon 56 71 99.375264 231.174763 165.2750135 2.218207201 -0.150088 193 58 SH5034 5034 snR10 snR10 201 213 28.023017 116.870048 72.4465325 1.860017604 -0.150093 137 59 SH12383 12383 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.342118 128.106335 24.342118 104.764217 64.5531675 1.809917557 -0.150097 46 10 SH1687 1687 Leu6 tRNA 1 13 172.517056 346.64622 259.581638 2.414273969 -0.150112 178 7 SH21797 21797 copy of SH14862 23.504679 98.924502 61.2145905 1.786854949 -0.150122 150 58 SH21007 21007 YML094W spliced 22.922013 94.17503 58.5485215 1.767515932 -0.150124 56 95 SH21318 21318 YPL249C-A spliced 33.606056 125.741184 79.67362 1.90131455 -0.150168 77 52 SH1186 1186 His1 3' flank 42.610815 140.193399 91.402107 1.960956207 -0.150268 49 42 SH199 199 Arg2 3' flank 24.686298 106.65505 65.670674 1.817371474 -0.150278 37 84 SH9844 9844 RUF5-1 RUF5-1 26 47 25.219079 109.574844 67.3969615 1.828640317 -0.150304 12 70 SH5386 5386 snR31 5' - 15 -4 15 27.103296 114.831108 70.967202 1.851057683 -0.150316 187 101 SH6765 6765 snR50 snR50 1 18 463.668213 797.415181 630.541697 2.799713811 -0.150343 7 100 SH9577 9577 RUF3 RUF3 271 290 22.721388 92.567201 57.6442945 1.760756328 -0.150379 120 56 SH11999 11999 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6881 6899 60.233927 168.080117 114.157022 2.057502631 -0.150395 31 53 SH15789 15789 YDL029W_4_399336_400634_INTRON_23_145 intron 22.619335 113.351672 22.619335 91.732337 57.175836 1.757212523 -0.150405 146 57 SH14674 14674 MT 21S rRNA 21S rRNA4 22.807304 115.08752 22.807304 93.280216 58.04376 1.763755538 -0.150431 82 76 SH14391 14391 MT 21S rRNA 5' / 21S rRNA3 20.376303 94.25372 20.376303 74.877417 47.62686 1.67785195 -0.150452 189 39 SH20728 20728 YJL177W spliced 32.947684 124.738857 78.8432705 1.896764631 -0.150476 136 19 SH5226 5226 snR30 5' - 3 -19 3 26.560343 113.613223 70.086783 1.845636126 -0.150494 31 25 SH15447 15447 YBL087C_2_60732_59815_INTRON_43_546 intron 24.231139 127.425013 24.231139 104.193874 64.2125065 1.807619623 -0.150501 46 74 SH21149 21149 YNL246W spliced 23.942833 102.611418 63.2771255 1.801246742 -0.150501 115 27 SH19558 19558 CBP1 2.2 20.742063 77.419392 49.0807275 1.690910991 -0.150511 177 13 SH894 894 Glu3 5' flank - tRNA2 2 24.967644 108.215052 66.591348 1.823417806 -0.15053 46 51 SH14535 14535 MT 21S rRNA 21S rRNA3 22.731585 114.400845 22.731585 92.66926 57.7004225 1.761178993 -0.150566 185 37 SH19214 19214 YPL081W_16_404945_406039_INTRON_8_508 intron 26.312707 138.369416 26.312707 113.056709 69.684708 1.843137485 -0.150625 15 7 SH8219 8219 snoRNA cluster 3; snR51 31.858866 153.891486 31.858866 123.03262 77.445743 1.888997551 -0.150633 4 85 SH6222 6222 snR40 3' 24.43413 105.310776 64.872453 1.81206032 -0.150652 86 67 SH19183 19183 YPL079W_16_406631_407534_INTRON_12_432 intron 21.356921 102.234232 21.356921 81.877311 51.617116 1.712793736 -0.150666 8 4 SH13087 13087 MT COX1 COX1ai3 51.775952 205.52925 51.775952 154.753298 103.264625 2.013951572 -0.15071 117 84 SH11128 11128 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2526 2539 161.562617 329.530514 245.5465655 2.390133864 -0.150723 161 15 SH2590 2590 Pro3 5' flank 24.334996 104.777382 64.556189 1.809937884 -0.150729 179 15 SH8800 8800 LSR1 / U2 RNA U2 641 657 25.065644 108.777975 66.9218095 1.825567675 -0.150832 152 66 SH18172 18172 YLR448W_12_1028848_1029762_INTRON_16_399 intron 24.785686 131.030401 24.785686 107.244715 66.0152005 1.819643947 -0.150833 161 64 SH12140 12140 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7586 7604 23.425683 98.346336 60.8860095 1.784517511 -0.150841 167 38 SH18760 18760 YNL162W_14_331319_332151_INTRON_5_516 intron 23.576196 122.172237 23.576196 99.596041 61.5861185 1.789482833 -0.150912 30 44 SH8218 8218 snoRNA cluster 3; snR51 24.568027 129.631517 24.568027 106.06349 65.3157585 1.815017975 -0.150926 99 58 SH15056 15056 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.352112 120.102676 23.352112 97.750564 60.551338 1.782123744 -0.150928 127 26 SH11221 11221 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2991 3013 21.111229 80.107882 50.6095555 1.704232523 -0.150929 18 90 SH1474 1474 Leu2 3' flank 23.838516 101.78369 62.811103 1.79803642 -0.150949 175 55 SH18547 18547 YMR230W_13_732413_733140_INTRON_53_462 intron 22.582646 113.067991 22.582646 91.485345 57.0339955 1.756133797 -0.15096 151 58 SH2792 2792 Pro6 tRNA-intron 51 67 112.697308 252.60306 182.650184 2.261620114 -0.150983 39 6 SH18007 18007 YLR287C-A_12_713158_712537_INTRON_4_433 intron 22.726939 114.400075 22.726939 92.673136 57.7000375 1.761176095 -0.151001 153 41 SH3991 3991 RNase MRP 3' 25.171085 109.373296 67.2721905 1.827835569 -0.151026 105 79 SH3206 3206 Ser5 3' flank 22.0819 87.444846 54.763373 1.738490189 -0.151049 49 79 SH14785 14785 MT ORF11; tRNA Leu; tRNA Gln 3' 21.49945 103.459539 21.49945 82.960089 52.2297695 1.717918109 -0.151088 27 36 SH14494 14494 MT 21S rRNA 21S rRNA3 52.728858 208.023628 52.728858 156.29477 104.511814 2.019165386 -0.151093 83 17 SH7685 7685 snoRNA cluster1 intergenic 23.898217 125.199577 23.898217 102.30136 63.0997885 1.800027904 -0.151115 14 34 SH9919 9919 RUF5-1 RUF5-1 401 420 22.800795 93.293434 58.0471145 1.763780636 -0.151117 145 56 SH8348 8348 snoRNA cluster4 snR53/3' 22.715199 114.303367 22.715199 92.588168 57.6516835 1.760811994 -0.151121 42 60 SH20835 20835 YKR095W-A spliced 25.454427 110.9411 68.1977635 1.833770132 -0.151134 33 99 SH14590 14590 MT 21S rRNA Sce1 endonuc 24.42378 128.718368 24.42378 105.294588 64.859184 1.81197148 -0.151138 179 77 SH9516 9516 RUF3 5' 23.718301 100.804335 62.261318 1.79421831 -0.151184 128 41 SH19784 19784 Negative Control 24.911633 107.964629 66.438131 1.822417407 -0.151195 155 36 SH15240 15240 MT tRNA fMet 5' 22.849131 115.542545 22.849131 93.693414 58.2712725 1.765454502 -0.151212 145 13 SH4664 4664 snR3 3' 24.803697 107.376768 66.0902325 1.82013728 -0.151231 14 17 SH1633 1633 Leu5 tRNA-exon/intron 31 50 23.394627 98.13254 60.7635835 1.783643378 -0.151254 51 6 SH10275 10275 RUF7 5' - 2 -14 2 23.271461 97.124303 60.197882 1.779581211 -0.151274 24 27 SH17856 17856 YKR095W-A_11_625432_625839_INTRON_39_113 intron 22.225371 109.841988 22.225371 88.616617 55.420994 1.743674311 -0.151277 50 12 SH2406 2406 Phe4 81-91 + 3' flank 81 22.619569 91.818966 57.2192675 1.757542294 -0.151287 84 98 SH14252 14252 MT tRNA Ser 3' 21.67094 104.918922 21.67094 84.247982 52.959461 1.723943556 -0.151307 86 44 SH18419 18419 YMR133W_13_536206_537608_INTRON_1243_1358 intron 21.623306 104.51828 21.623306 83.894974 52.75914 1.722297708 -0.151314 96 54 SH6917 6917 snR58 5' 27.861582 116.590831 72.2262065 1.858694805 -0.151332 129 39 SH18193 18193 YML024W_13_225889_226697_INTRON_4_401 intron 28.939222 146.375934 28.939222 118.436712 73.687967 1.867396575 -0.151348 173 69 SH20927 20927 YLR367W spliced 24.001934 103.018256 63.510095 1.802842762 -0.151349 99 4 SH14202 14202 MT COB 3' 22.703694 114.220646 22.703694 92.516952 57.610323 1.76050031 -0.151363 57 21 SH16390 16390 YER044C-A_5_239773_238459_INTRON_64_151 exon/intron 24.409642 128.646548 24.409642 105.236906 64.823274 1.811730962 -0.151373 69 74 SH16138 16138 YDR092W_4_629869_630598_INTRON_31_298 exon/intron 24.034709 126.235969 24.034709 103.20126 63.6179845 1.803579906 -0.151412 157 37 SH20372 20372 YER179W spliced 26.697264 113.981772 70.339518 1.847199388 -0.151446 184 33 SH16470 16470 YER102W_5_362729_363698_INTRON_1_360 exon/intron 24.106037 126.699155 24.106037 103.593118 63.8495775 1.805158028 -0.151469 126 70 SH18583 18583 YNL050C_14_534978_534075_INTRON_18_108 5' exon 28.174919 144.373969 28.174919 117.19905 72.6869845 1.861456652 -0.15149 118 60 SH7162 7162 snR63 3' 25.399727 110.671543 68.035635 1.832736443 -0.151499 23 10 SH20979 20979 YML056C spliced 27.582694 115.980231 71.7814625 1.856012303 -0.151515 152 18 SH17258 17258 YHR101C_8_315970_314876_INTRON_111_197 exon/intron 22.261552 110.202183 22.261552 88.940631 55.6010915 1.745083317 -0.151627 31 64 SH4263 4263 telomerase RNA telomerase 351 368 23.00675 95.015905 59.0113275 1.770935384 -0.151739 88 37 SH16192 16192 YDR381C-A_4_1238839_1238301_INTRON_27_220 5' exon 24.225966 127.494493 24.225966 104.268527 64.2472465 1.807854519 -0.151758 106 29 SH15600 15600 YBR089C-A_2_426588_426148_INTRON_1_114 intron/exon 23.187944 118.680034 23.187944 96.49209 59.840017 1.776991708 -0.151777 108 30 SH2386 2386 Phe4 5' flank 23.099116 95.770937 59.4350265 1.774042461 -0.151798 26 73 SH4824 4824 snR8 5' 26.174289 112.816867 69.495578 1.841957171 -0.151906 6 47 SH15662 15662 YBR189W_2_604466_605466_INTRON_8_420 intron 30.50945 150.477508 30.50945 120.968058 75.738754 1.879318156 -0.151914 144 90 SH18627 18627 YNL096C_14_444312_443395_INTRON_145_489 intron 21.93816 107.320217 21.93816 86.382057 54.1601085 1.733679526 -0.151962 179 75 SH21732 21732 copy of SH12132 23.787387 101.461926 62.6246565 1.796745357 -0.151965 179 34 SH11225 11225 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3011 3032 34.283923 126.892557 80.58824 1.906271671 -0.151976 42 64 SH20196 20196 YDR005C spliced 23.330234 97.676913 60.5035735 1.781781026 -0.151984 175 59 SH19034 19034 YOR234C_15_779404_778554_INTRON_20_546 intron 22.303453 110.618444 22.303453 89.314991 55.809222 1.746705968 -0.152014 122 36 SH1967 1967 Lys2 tRNA 36 53 13117.18017 15214.98295 14166.08156 4.151249738 -0.152047 23 99 SH16692 16692 YGL030W_7_439087_439634_INTRON_4_233 3' exon 22.402679 111.533369 22.402679 90.13069 56.2666845 1.750251325 -0.152139 41 67 SH16316 16316 YDR471W_4_1401759_1402553_INTRON_32_415 intron 25.422482 135.274984 25.422482 110.852502 68.137492 1.833386144 -0.152139 34 90 SH21290 21290 YPL175W spliced 30.152985 120.421429 75.287207 1.876721186 -0.15215 40 58 SH8280 8280 snoRNA cluster4 intergenic 23.162997 118.492738 23.162997 96.329741 59.746369 1.776311517 -0.152193 4 13 SH15796 15796 YDL061C_4_341182_340627_INTRON_1_408 intron 58.580806 223.226571 58.580806 165.645765 112.1132855 2.04965708 -0.15221 214 82 SH17901 17901 YLR061W_12_263195_263949_INTRON_13_401 intron 22.004858 107.941763 22.004858 86.936905 54.4708815 1.736164403 -0.152225 60 96 SH3035 3035 Ser2 3' flank 28.092394 117.105908 72.599151 1.860931542 -0.152243 211 79 SH14293 14293 MT VAR1 includes 5’ processing site VAR1 21.991298 107.823139 21.991298 86.831841 54.4115695 1.735691253 -0.152258 74 15 SH12523 12523 MT_ORF6 + ORF7 (hypothetical) ORF6/7 21.430637 102.983008 21.430637 82.552371 51.991504 1.715932381 -0.152277 114 102 SH3543 3543 Tyr2 5' flank - tRNA1 1 28.820543 118.30148 73.5610115 1.866647692 -0.152343 44 47 SH16232 16232 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 24.623857 130.120851 24.623857 106.496994 65.5604255 1.816641764 -0.152468 90 69 SH4771 4771 snR5 snR5 26 43 25.23066 109.827165 67.5289125 1.829489756 -0.152496 148 16 SH15513 15513 YBR048W_2_332790_333771_INTRON_46_556 intron 22.605739 113.429746 22.605739 91.824007 57.214873 1.757508938 -0.15252 85 41 SH14194 14194 MT COB Exon6 27.71601 143.05747 27.71601 116.34146 72.028735 1.857505788 -0.152545 150 54 SH20214 20214 YDR064W spliced 23.740521 101.131095 62.435808 1.795433736 -0.15255 56 54 SH14997 14997 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 38.708063 171.835459 38.708063 134.127396 86.4177295 1.936602852 -0.152605 37 43 SH14306 14306 MT VAR1 includes 5’ processing site VAR1 22.336331 110.972795 22.336331 89.636464 55.9863975 1.748082523 -0.152606 50 28 SH12851 12851 MT COX1 COX1ai1 24.820844 131.411451 24.820844 107.590607 66.2057255 1.820895549 -0.152653 150 78 SH15028 15028 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.216737 119.031826 23.216737 96.815089 60.015913 1.778266417 -0.152664 37 66 SH8600 8600 snR19 / U1 RNA U1 496 515 23.473409 98.924675 61.199042 1.786744624 -0.152668 6 55 SH2766 2766 Pro6 5' flank 61.929707 171.007802 116.4687545 2.066209431 -0.15268 95 56 SH20724 20724 YJL177W spliced 24.700038 106.933863 65.8169505 1.818337756 -0.152709 162 74 SH4529 4529 U3b (snR17b) U3b 201 217 109.134482 247.187025 178.1607535 2.250812041 -0.152712 39 89 SH8281 8281 snoRNA cluster4 intergenic 24.112918 126.84721 24.112918 103.734292 63.923605 1.805661259 -0.152745 142 5 SH4047 4047 SRP RNA SRP RNA 126 145 21.677435 84.423481 53.050458 1.724689138 -0.152802 14 58 SH19467 19467 ADH1 24.559281 106.174431 65.366856 1.815357597 -0.152832 4 64 SH2410 2410 Phe4 3' flank 22.055384 87.396843 54.7261135 1.738194607 -0.152843 190 58 SH10330 10330 RUF7 RUF7 261 278 23.188121 96.600149 59.894135 1.777384297 -0.152854 213 53 SH8119 8119 snoRNA cluster 3; snR41 27.160975 141.281939 27.160975 115.120964 71.1409695 1.852119779 -0.152936 195 86 SH13314 13314 MT COX1 COX1-ai5a 22.364319 111.264348 22.364319 89.900029 56.132174 1.749211863 -0.152996 127 43 SH18992 18992 YOR122C_15_552886_552297_INTRON_14_222 5' exon 24.69182 130.607375 24.69182 106.915555 65.8036875 1.818250231 -0.153027 192 41 SH4161 4161 SRP RNA 3' 72.74329 188.398086 130.570688 2.115845692 -0.153027 210 8 SH15571 15571 YBR084C-A_2_415219_414144_INTRON_3_508 intron 25.896385 137.147027 25.896385 112.250642 69.0735135 1.839311547 -0.153117 24 73 SH6823 6823 snR52 snR52 21 36 96.313407 226.622412 161.4679095 2.208086223 -0.153121 52 16 SH14298 14298 MT VAR1 includes 5’ processing site VAR1 22.755528 114.87352 22.755528 93.117992 57.93676 1.762954204 -0.153153 160 66 SH993 993 Gly2 5' flank 22.37199 89.977257 56.1746235 1.74954017 -0.153155 200 71 SH11405 11405 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3911 3926 7784.121955 9626.108151 8705.115053 3.939774515 -0.153268 17 103 SH5718 5718 snR34 snR34 511 530 40.310725 136.747009 88.528867 1.947084906 -0.153274 122 75 SH10599 10599 RUF8 RUF8 921 935 39.786532 135.912828 87.84968 1.943740184 -0.153297 144 58 SH9219 9219 snR6 / U6 RNA 5' 22.805725 93.551328 58.1785265 1.764762718 -0.153365 81 7 SH3261 3261 Thr2 5' flank 21.561308 83.609111 52.5852095 1.720863608 -0.153369 56 27 SH3078 3078 Ser3 tRNA 86 100 6866.311235 8622.876708 7744.593972 3.888998654 -0.153406 138 9 SH13752 13752 MT COB Exon1 22.030175 108.281394 22.030175 87.251219 54.640697 1.737516231 -0.153456 177 76 SH1850 1850 Leu9 5' flank - tRNA8 8 37.758103 132.643942 85.2010225 1.930444807 -0.153522 22 20 SH14580 14580 MT 21S rRNA intronic 36.516004 166.173696 36.516004 130.657692 83.586848 1.922137949 -0.15357 25 42 SH17814 17814 YKR057W_11_551293_551878_INTRON_25_346 intron 25.38625 135.163524 25.38625 110.777274 68.081762 1.833030787 -0.153571 137 76 SH20369 20369 YER133W spliced 24.038245 103.39926 63.7187525 1.804267264 -0.153618 161 97 SH231 231 Arg3 11-27 11 27 24.179627 104.168988 64.1743075 1.807361191 -0.153624 49 23 SH12108 12108 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7426 7443 1019.706307 1602.946745 1311.326526 3.117710846 -0.153671 69 65 SH3487 3487 Tyr1 5' flank 22.123753 88.028446 55.0760995 1.740963176 -0.153754 163 50 SH11793 11793 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5851 5868 1208.979891 1867.452966 1538.216429 3.187017445 -0.153755 91 92 SH14648 14648 MT 21S rRNA intronic 24.147106 127.149839 24.147106 104.002733 64.0749195 1.806688069 -0.153757 125 63 SH13771 13771 MT COB intronic 23.54899 122.212855 23.54899 99.663865 61.6064275 1.789626025 -0.153782 93 63 SH18849 18849 YNL312W_14_48286_49215_INTRON_8_115 3' exon 23.547338 122.198247 23.547338 99.650909 61.5991235 1.789574533 -0.153789 32 26 SH21909 21909 copy of SH19562 22.475562 90.897998 56.68678 1.753481788 -0.153975 92 40 SH8378 8378 snoRNA cluster 5 5' 23.903666 125.561596 23.903666 102.65793 63.280798 1.801271947 -0.154071 203 10 SH21253 21253 YPL075W spliced 26.160098 112.914478 69.537288 1.842217749 -0.154078 120 48 SH7686 7686 snoRNA cluster1 intergenic 25.396684 135.280515 25.396684 110.883831 68.1402575 1.83340377 -0.154135 63 68 SH470 470 Asp2 5' flank 23.178442 96.648759 59.9136005 1.777525419 -0.154142 205 71 SH17563 17563 YJL189W_10_75932_76473_INTRON_7_392 intron 26.64611 139.680854 26.64611 114.034744 70.340427 1.847205 -0.154242 95 33 SH2151 2151 Met1 3' flank 28.471491 117.841816 73.1566535 1.864253831 -0.154247 166 27 SH21139 21139 YNL162W spliced 24.586275 106.440529 65.513402 1.816330152 -0.154252 17 68 SH18701 18701 YNL130C_14_381156_379555_INTRON_30_470 intron 24.804915 131.444562 24.804915 107.639647 66.222281 1.821004136 -0.154268 122 68 SH8841 8841 LSR1 / U2 RNA U2 846 861 7373.081916 9184.806196 8278.944056 3.917974948 -0.154354 61 81 SH10254 10254 RUF6 3' 22.05122 87.502753 54.7769865 1.738598136 -0.154365 53 46 SH21936 21936 copy of SH19619 26.302224 113.259274 69.780749 1.843735627 -0.154396 150 63 SH16698 16698 YGL031C_7_438393_437938_INTRON_1_456 intron 23.908839 125.648571 23.908839 102.739732 63.3242855 1.801570298 -0.154434 186 98 SH366 366 Asn1 5' flank 24.316398 104.981548 64.648973 1.81056163 -0.154441 73 7 SH20071 20071 YCR028C-A spliced 21.883998 86.177997 54.0309975 1.732642985 -0.154471 95 93 SH16598 16598 YFL034C-A_6_64931_64242_INTRON_13_333 intron 23.991342 126.207298 23.991342 103.215956 63.603649 1.803482032 -0.154503 141 37 SH20850 20850 YLR061W spliced 28.794207 118.384736 73.5894715 1.866815684 -0.154545 87 82 SH17295 17295 YHR141C_8_382752_381991_INTRON_5_445 intron 20.308557 94.026043 20.308557 74.717486 47.5130215 1.676812649 -0.154564 150 8 SH3806 3806 RNaseP 5' - 10 10 46.23033 146.26037 96.24535 1.983379756 -0.154585 131 27 SH15264 15264 MT 9S rRNA 9S 23.671325 123.435692 23.671325 100.764367 62.217846 1.793914972 -0.154586 13 12 SH14257 14257 MT VAR1 includes 5’ processing site 5' 23.361866 120.565704 23.361866 98.203838 60.782852 1.783781074 -0.15464 200 7 SH2208 2208 Phe1 5' flank 30.761217 121.523889 76.142553 1.881627434 -0.154681 2 36 SH21114 21114 YNL096C spliced 23.682396 100.86918 62.275788 1.794319232 -0.154706 48 69 SH11432 11432 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4046 4061 45.471676 145.065686 95.268681 1.978950152 -0.154709 22 16 SH13101 13101 MT COX1 COX1ai3 24.856817 131.823787 24.856817 107.96697 66.4118935 1.822245863 -0.154771 48 74 SH722 722 Gln3 3' flank 21.572032 83.808695 52.6903635 1.721731195 -0.154791 71 90 SH12352 12352 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.635636 130.392659 24.635636 106.757023 65.6963295 1.817541106 -0.154805 90 64 SH21884 21884 copy of SH18599 24.78009 107.5518 66.165945 1.82063452 -0.154841 180 78 SH19892 19892 Positive Control 8 23.715918 101.165557 62.4407375 1.795468024 -0.154863 47 87 SH927 927 Glu3 3' flank 22.995515 95.236465 59.11599 1.771704967 -0.154932 161 12 SH12015 12015 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6961 6986 22.638846 92.329163 57.4840045 1.759547015 -0.15494 24 100 SH14093 14093 MT COB Cytbi4 24.52004 129.660731 24.52004 106.140691 65.3303655 1.815115088 -0.155002 89 52 SH8923 8923 snR17a / U3a 5' 31.973012 123.477814 77.725413 1.890563038 -0.155002 104 8 SH16808 16808 YGL137W_7_249872_252741_INTRON_19_218 intron/exon 22.660198 114.171791 22.660198 92.511593 57.5858955 1.760316125 -0.155008 56 88 SH15182 15182 MT COX3 cox3 31.230461 152.518959 31.230461 122.288498 76.7594795 1.885132021 -0.155013 107 93 SH17592 17592 YJL191W_10_73786_74610_INTRON_11_418 intron 22.973405 117.038802 22.973405 95.065397 59.019401 1.770994797 -0.155018 115 96 SH5741 5741 snR34 3' 23.661984 100.737988 62.199986 1.793790287 -0.155085 51 83 SH412 412 Asn1 3' flank 33.641111 126.10151 79.8713105 1.90239081 -0.155137 69 33 SH7999 7999 snoRNA cluster 2 intergenic 22.769126 115.194625 22.769126 93.425499 58.0973125 1.764156043 -0.155151 55 63 SH20421 20421 YGL031C spliced 66.892295 179.188248 123.0402715 2.090047281 -0.155242 183 22 SH13312 13312 MT COX1 COX1-ai5a 25.408151 135.455728 25.408151 111.047577 68.227864 1.833961775 -0.155288 151 52 SH13297 13297 MT COX1 COX1-ai5a 22.619364 113.822812 22.619364 92.203448 57.411406 1.758998183 -0.155299 8 24 SH17317 17317 YHR203C_8_505526_504472_INTRON_15_283 3' exon 34.798522 161.755499 34.798522 127.956977 81.3777495 1.910505675 -0.155315 26 22 SH1247 1247 Ile2 5' flank 55.541649 161.052476 108.2970625 2.034616677 -0.155327 68 25 SH14425 14425 MT 21S rRNA 21S rRNA3 22.228389 110.249084 22.228389 89.020695 55.624542 1.745266448 -0.155364 17 75 SH14043 14043 MT COB Cytbi4 26.89402 140.562491 26.89402 114.668471 70.7812455 1.8499182 -0.155408 153 60 SH15058 15058 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.902011 116.427501 22.902011 94.52549 58.7137505 1.768739823 -0.155413 135 88 SH12501 12501 MT_tRNA Pro tRNA/3' 21.14214 100.838689 21.14214 80.696549 50.9193445 1.706882804 -0.155414 207 15 SH4433 4433 telomerase RNA telomerase 1201 1215 24.748892 107.431197 66.0900445 1.820136044 -0.15544 194 103 SH2502 2502 Pro1 tRNA 1 13 986.449951 1557.88693 1272.168441 3.104544618 -0.155446 136 30 SH5660 5660 snR34 snR34 221 236 75.923362 193.835257 134.8793095 2.129945334 -0.15546 98 83 SH3569 3569 Tyr2 3' flank 22.457121 90.888873 56.672997 1.75337618 -0.155462 112 80 SH7194 7194 snR64 snR64 36 50 1930.771452 2836.580381 2383.675917 3.377247209 -0.155462 48 24 SH20423 20423 YGL031C spliced 46.326216 146.483968 96.405092 1.984099973 -0.155477 178 21 SH17632 17632 YJR094W-A_10_608000_608553_INTRON_3_277 intron 24.764839 131.294568 24.764839 107.529729 66.147284 1.820512017 -0.155571 47 44 SH14899 14899 MT tRNA Ile tRNA 31.046201 152.070329 31.046201 122.024128 76.5351645 1.88386102 -0.155574 196 97 SH11180 11180 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2786 2799 23.159756 96.63987 59.899813 1.777425467 -0.155593 118 38 SH12627 12627 MT_15S MT_15S 22.118348 109.277927 22.118348 88.159579 55.1389635 1.741458598 -0.155648 88 16 SH3842 3842 RNaseP RNaseP 176 188 43.631908 142.226591 92.9292495 1.96815243 -0.155659 83 100 SH17900 17900 YLR061W_12_263195_263949_INTRON_13_401 intron 26.95074 140.763519 26.95074 114.812779 70.8817595 1.85053449 -0.155668 144 60 SH5400 5400 snR31 snR31 66 80 110.176866 249.275215 179.7260405 2.254611007 -0.155677 117 29 SH4255 4255 telomerase RNA telomerase 311 332 22.582662 91.942099 57.2623805 1.757869398 -0.155719 92 5 SH5499 5499 snR32 snR32 156 173 280.45609 517.779541 399.1178155 2.601101114 -0.155747 182 60 SH167 167 Arg2 5' flank 24.219877 104.565797 64.392837 1.80883756 -0.155791 40 57 SH1825 1825 Leu8 3' flank 25.166028 109.755683 67.4608555 1.829051844 -0.155798 153 44 SH5364 5364 snR30 3' 22.986653 95.250367 59.11851 1.77172348 -0.155811 98 86 SH18365 18365 YMR079W_13_424988_426058_INTRON_10_165 exon/intron 22.272685 110.694484 22.272685 89.421799 55.847242 1.74700173 -0.15582 40 104 SH21041 21041 YMR133W spliced 52.954658 157.051235 105.0029465 2.021201486 -0.155901 58 104 SH19943 19943 YBL040C spliced 23.689544 101.059339 62.3744415 1.79500667 -0.155965 61 19 SH6575 6575 snR47 5' 23.857797 102.473378 63.1655875 1.80048054 -0.155987 80 46 SH4381 4381 telomerase RNA telomerase 941 957 23.533302 99.763861 61.6485815 1.789923088 -0.156032 48 86 SH12118 12118 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7476 7493 24.900102 108.312119 66.6061105 1.823514074 -0.156036 176 84 SH3235 3235 Thr1 tRNA 31 48 64.289796 175.118171 119.7039835 2.078108603 -0.156056 113 10 SH19614 19614 RNA14 1.1 66.871136 179.235875 123.0535055 2.09009399 -0.156064 65 86 SH4376 4376 telomerase RNA telomerase 916 932 22.15263 88.475468 55.314049 1.74283545 -0.156079 140 4 SH21531 21531 copy of SH3751 23.308204 97.906576 60.60739 1.782525582 -0.156079 160 32 SH17964 17964 YLR185W_12_522665_523290_INTRON_8_366 intron 22.603841 113.755807 22.603841 92.151966 57.3779035 1.758744676 -0.15609 65 77 SH19456 19456 CYC1 23.868658 102.5771 63.222879 1.800874269 -0.156103 210 61 SH6310 6310 snR42 snR42 331 345 57.549468 164.353994 110.951731 2.045134082 -0.156111 108 83 SH19103 19103 YOR312C_15_901173_900242_INTRON_2_427 intron 25.4561 135.847414 25.4561 111.391314 68.423707 1.835206599 -0.15619 203 21 SH8684 8684 LSR1 / U2 RNA U2 61 77 25.086777 109.360451 67.223614 1.827521857 -0.156281 200 56 SH10865 10865 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1211 1227 183.164995 364.741233 273.953114 2.437676241 -0.156291 110 28 SH16728 16728 YGL033W_7_435621_436347_INTRON_56_125 3' exon 22.960563 117.047264 22.960563 95.086701 59.023632 1.77102593 -0.156304 161 17 SH16121 16121 YDR064W_4_579453_580447_INTRON_22_560 intron 24.115434 127.156519 24.115434 104.041085 64.0782595 1.806710707 -0.156341 158 54 SH16742 16742 YGL076C_7_365994_364333_INTRON_565_1032 intron 23.482316 121.8569 23.482316 99.374584 61.42845 1.788369557 -0.156366 142 85 SH3095 3095 Ser3 3' flank 26.254405 113.268822 69.7616135 1.843616517 -0.156377 53 11 SH12195 12195 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7861 7879 22.964345 95.125663 59.045004 1.771183156 -0.156389 84 8 SH13052 13052 MT COX1 COX1ai2 23.78492 124.688075 23.78492 101.903155 62.8440375 1.798264079 -0.156393 131 68 SH1968 1968 Lys2 tRNA 41 57 11326.43281 13411.32899 12368.8809 4.092330408 -0.156464 204 83 SH1451 1451 Leu2 tRNA-exon/intron 26 42 26.494047 113.823903 70.158975 1.846083236 -0.156487 92 77 SH9924 9924 RUF5-1 RUF5-1 426 445 24.753101 107.54448 66.1487905 1.820521908 -0.156509 138 52 SH3083 3083 Ser3 3' flank 22.328797 89.946986 56.1378915 1.749256097 -0.156562 112 55 SH7894 7894 snoRNA cluster1 intergenic 26.775764 140.247037 26.775764 114.471273 70.6235185 1.848949351 -0.156579 139 33 SH3358 3358 Thr3 3' flank 22.674751 92.78391 57.7293305 1.761396521 -0.156579 168 86 SH2828 2828 Pro7 5' flank 32.311461 124.112799 78.21213 1.893274113 -0.156615 197 34 SH1782 1782 Leu8 5' flank 24.301215 105.079792 64.6905035 1.810840531 -0.15664 30 52 SH2152 2152 Met1 3' flank 35.066058 128.488176 81.777117 1.912631796 -0.156672 179 7 SH2872 2872 Pro7 3' flank 25.773086 112.179231 68.9761585 1.838699003 -0.156697 205 14 SH2483 2483 Pro1 5' flank 25.343671 110.815921 68.079796 1.833018246 -0.15672 207 18 SH20905 20905 YLR316C spliced 24.089003 103.929006 64.0090045 1.806241073 -0.156734 54 20 SH5970 5970 snR36 snR36 306 325 22.742471 93.360204 58.0513375 1.76381223 -0.156743 151 72 SH18980 18980 YOR096W_15_505793_506766_INTRON_145_545 intron 24.855852 131.987314 24.855852 108.131462 66.493657 1.822780219 -0.156774 26 89 SH8088 8088 snoRNA cluster 2 3' 23.079138 118.178866 23.079138 96.099728 59.589433 1.775169253 -0.156792 182 104 SH21563 21563 copy of SH4993 55.723606 161.47727 108.600438 2.035831577 -0.156815 139 56 SH21184 21184 YOL047C spliced 26.651331 114.204331 70.427831 1.847744313 -0.156846 113 40 SH8109 8109 snoRNA cluster 3; 5' 22.673549 114.473832 22.673549 92.800283 57.736916 1.761453582 -0.156849 124 68 SH13162 13162 MT COX1 intronic 157.980916 482.093981 157.980916 325.113065 241.5469905 2.383001631 -0.156905 121 55 SH20116 20116 YDL075W spliced 25.375864 111.010806 68.193335 1.83374193 -0.156915 53 4 SH14696 14696 MT tRNA thr2 5' 21.348291 102.683423 21.348291 82.335132 51.8417115 1.714679331 -0.156958 31 19 SH2469 2469 Phe5 3' flank 27.543586 116.229028 71.886307 1.856646173 -0.156973 4 69 SH16798 16798 YGL137W_7_249872_252741_INTRON_19_218 exon/intron 24.158172 127.488451 24.158172 104.330279 64.2442255 1.807834098 -0.157026 175 91 SH17492 17492 YJL041W_10_365480_368069_INTRON_2_119 5' exon 24.061359 126.867009 24.061359 103.80565 63.9335045 1.805728511 -0.15707 82 40 SH148 148 Arg1 3' flank 27.692604 116.573758 72.133181 1.858135085 -0.157149 115 101 SH21136 21136 YNL147W spliced 25.332703 110.794761 68.063732 1.832915758 -0.157174 49 47 SH16269 16269 YDR447C_4_1355542_1354818_INTRON_4_317 intron 64.25119 238.420882 64.25119 175.169692 119.710441 2.078132031 -0.157232 206 104 SH2258 2258 Phe1 3' flank 23.915395 103.023691 63.469543 1.802565371 -0.157234 188 70 SH6599 6599 snR47 3' 90.197911 217.217082 153.7074965 2.186695049 -0.157239 161 16 SH12668 12668 MT_15S 3' 22.18129 110.005747 22.18129 88.824457 55.5028735 1.744315468 -0.157347 90 42 SH21815 21815 copy of SH15700 25.778747 112.23185 69.0052985 1.838882439 -0.157361 10 36 SH19156 19156 YPL075W_16_412249_415357_INTRON_9_759 intron 29.710171 148.732204 29.710171 120.022033 74.866102 1.874285222 -0.157367 12 21 SH19828 19828 Negative Control 25.522655 111.641617 68.582136 1.836211007 -0.157426 145 63 SH9284 9284 RUF1 5' - 12 -4 14 22.762013 93.594241 58.178127 1.764759735 -0.157479 191 33 SH5955 5955 snR36 snR36 231 250 24.369635 105.525171 64.947403 1.81256179 -0.157501 80 104 SH13123 13123 MT COX1 COX1ai3 23.08665 118.325867 23.08665 96.239217 59.6629335 1.775704603 -0.157584 72 11 SH7330 7330 snR66 3' 23.152757 96.780666 59.9667115 1.777910233 -0.15759 179 69 SH11109 11109 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2431 2449 251.56756 472.699744 362.133652 2.558868884 -0.157662 106 33 SH7492 7492 snR71 76-90 + 3' 76 23.306308 98.055812 60.68106 1.783053159 -0.157719 199 78 SH13839 13839 MT COB Cytbi2 21.560527 104.537814 21.560527 83.977287 52.768907 1.722378099 -0.157793 156 24 SH3037 3037 Ser2 3' flank 24.717529 107.459513 66.088521 1.820126033 -0.157819 187 83 SH17921 17921 YLR078C_12_286560_285737_INTRON_4_92 5' exon 23.429528 121.514806 23.429528 99.085278 61.257403 1.787158581 -0.157824 137 60 SH2369 2369 Phe3 3' flank 61.081222 170.115519 115.5983705 2.062951712 -0.157858 157 82 SH5342 5342 snR30 snR30 561 575 25.254775 110.423959 67.839367 1.831481787 -0.157864 48 50 SH10185 10185 RUF6 RUF6 771 787 24.766536 107.7336 66.250068 1.821186328 -0.157875 24 20 SH3891 3891 RNaseP 3' 62.248705 172.013359 117.131032 2.06867197 -0.157876 207 41 SH15289 15289 MT 9S rRNA 9S 24.546054 130.071655 24.546054 106.525601 65.5358275 1.816478787 -0.157908 12 79 SH4329 4329 telomerase RNA telomerase 681 698 56.05619 162.114877 109.0855335 2.03776716 -0.157946 201 6 SH21148 21148 YNL246W spliced 28.519659 118.133802 73.3267305 1.865262321 -0.157984 209 102 SH3185 3185 Ser5 tRNA 46 58 27.964414 117.222481 72.5934475 1.860897422 -0.158031 175 31 SH2535 2535 Pro2 5' flank 22.997782 95.561436 59.279609 1.77290533 -0.158064 82 100 SH15293 15293 MT 9S rRNA 9S 23.369689 120.984291 23.369689 98.614602 60.9921455 1.785273911 -0.158069 154 11 SH1608 1608 Leu5 5' flank 27.051783 115.191445 71.121614 1.852001604 -0.158123 200 104 SH17218 17218 YHR041C_8_189855_189122_INTRON_15_115 exon/intron 25.468564 136.027335 25.468564 111.558771 68.5136675 1.835777216 -0.158152 50 53 SH15301 15301 YAL001C_1_151163_147591_INTRON_71_160 5'exon 24.53373 130.016219 24.53373 106.482489 65.5081095 1.816295066 -0.158201 131 45 SH3304 3304 Thr2 3' flank 25.300292 110.717046 68.008669 1.832564275 -0.158342 91 37 SH13093 13093 MT COX1 COX1ai3 24.23906 128.11973 24.23906 104.88067 64.559865 1.809962614 -0.158348 145 29 SH14335 14335 MT VAR1 includes 5’ processing site VAR1 25.712685 136.851057 25.712685 112.138372 68.9255285 1.838380105 -0.158361 145 72 SH15977 15977 YDL136W_4_217600_218367_INTRON_4_408 intron 24.687812 131.030813 24.687812 107.343001 66.0154065 1.819645302 -0.158374 204 31 SH11541 11541 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4591 4608 26316.17188 28190.18619 27253.17903 4.435417169 -0.158386 204 85 SH9527 9527 RUF3 RUF3 21 37 28.737762 118.513324 73.625543 1.867028511 -0.158394 190 55 SH5661 5661 snR34 snR34 226 240 23.415686 99.032552 61.224119 1.786922544 -0.158434 148 81 SH6513 6513 snR46 snR46 56 72 25.378492 111.161245 68.2698685 1.834229066 -0.158474 155 82 SH816 816 Glu1 3' flank 23.295689 98.045059 60.670374 1.782976672 -0.158482 115 17 SH7603 7603 snR189 snR189 86 103 55.67425 161.545246 108.609748 2.035868806 -0.158511 116 94 SH17553 17553 YJL189W_10_75932_76473_INTRON_7_392 intron 23.705774 124.166467 23.705774 101.460693 62.5832335 1.796457998 -0.15852 64 47 SH18598 18598 YNL069C_14_494998_493953_INTRON_29_477 intron 23.158854 119.084207 23.158854 96.925353 60.0421035 1.778455899 -0.158543 112 60 SH5774 5774 snR35 snR35 56 70 26.477327 113.911633 70.19448 1.846302961 -0.158571 46 6 SH13614 13614 MT ATP6 5' 20.986939 99.815381 20.986939 79.828442 50.4076905 1.7024968 -0.158651 187 89 SH19865 19865 Negative Control 33.035288 125.377236 79.206262 1.898759518 -0.15867 129 8 SH1188 1188 Ile1 5' flank 81.330198 202.953587 142.1418925 2.152722093 -0.158691 89 46 SH7243 7243 snR65 5' - 12 -9 12 23.693154 101.380914 62.537034 1.79613728 -0.158771 34 78 SH21502 21502 copy of SH2552 220.807637 424.491224 322.6494305 2.508730903 -0.158791 141 99 SH7851 7851 snoRNA cluster1 intergenic 22.89234 116.670881 22.89234 94.778541 58.8354405 1.769639009 -0.158826 118 104 SH904 904 Glu3 tRNA 31 43 81.423491 203.128019 142.275755 2.153130899 -0.15888 80 47 SH4120 4120 SRP RNA SRP RNA 491 503 26.499766 113.985861 70.2428135 1.846601898 -0.15895 155 47 SH17852 17852 YKR095W-A_11_625432_625839_INTRON_39_113 5' exon 178.379267 535.175505 178.379267 357.796238 268.0877525 2.428276974 -0.158993 66 15 SH10039 10039 RUF6 RUF6 41 57 87.175895 212.486605 149.83125 2.175602403 -0.159024 133 17 SH13629 13629 MT ATP6 ATP6 22.0949 109.378517 22.0949 88.283617 55.1892585 1.741854559 -0.159039 106 90 SH12780 12780 MT COX1 COX1ai1 23.136495 118.92908 23.136495 96.792585 59.96454 1.777894506 -0.159052 175 49 SH16769 16769 YGL103W_7_310965_311925_INTRON_50_560 intron 3175.063392 7574.967378 3175.063392 4400.903986 3787.983689 3.5784081 -0.159109 41 49 SH423 423 Asp1 5' flank 26.421808 113.817337 70.1195725 1.84583926 -0.159113 39 97 SH17659 17659 YKL002W_11_437416_438182_INTRON_61_128 intron 23.547804 122.75188 23.547804 100.204076 61.87594 1.79152181 -0.159147 103 86 SH9540 9540 RUF3 RUF3 86 101 23.498497 99.801387 61.649942 1.789932672 -0.159227 78 10 SH14968 14968 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 24.49166 129.829583 24.49166 106.337923 65.4147915 1.815675961 -0.159234 154 33 SH3173 3173 Ser5 5' flank - tRNA5 5 27.313186 115.850645 71.5819155 1.854803316 -0.159243 71 64 SH1305 1305 Ile3 5' flank 42.944716 141.388517 92.1666165 1.964573645 -0.159291 41 8 SH21473 21473 copy of SH1243 24.778497 107.925297 66.351897 1.821853344 -0.159363 193 87 SH13226 13226 MT COX1 COX1-ai4 24.534242 130.121077 24.534242 106.586835 65.5605385 1.816642512 -0.159416 129 104 SH17452 17452 YIL148W_9_68708_69528_INTRON_9_442 intron 27.256836 141.991135 27.256836 115.734299 71.4955675 1.854279118 -0.159418 141 84 SH21780 21780 copy of SH14230 24.224325 104.888946 64.5566355 1.809940888 -0.159428 31 85 SH10635 10635 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 61 79 25.748839 112.289208 69.0190235 1.83896881 -0.159486 82 50 SH20856 20856 YLR078C spliced 1428.193813 2176.468316 1802.331065 3.255834568 -0.159512 30 59 SH19939 19939 YBL027W spliced 78.990476 199.211199 139.1008375 2.143329745 -0.15952 120 79 SH17685 17685 YKL006W_11_431544_432358_INTRON_130_527 intron 33.052139 157.50853 33.052139 125.456391 79.254265 1.899022643 -0.15953 141 45 SH1017 1017 Gly2 3' flank 22.149117 88.772583 55.46085 1.743986521 -0.15959 114 87 SH16220 16220 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 35.086435 162.79898 35.086435 128.712545 81.89949 1.913281197 -0.159618 186 65 SH261 261 Arg4 5' flank 23.936534 103.333203 63.6348685 1.803695151 -0.159634 21 89 SH14412 14412 MT 21S rRNA 21S rRNA3 130.329427 411.180376 130.329427 281.850949 206.090188 2.314057315 -0.15965 94 4 SH12605 12605 MT_15S MT_15S 22.331331 111.604028 22.331331 90.272697 56.302014 1.75052393 -0.159798 26 7 SH2092 2092 Lys4 3' flank 27.29592 115.845946 71.570933 1.854736679 -0.159799 158 73 SH9654 9654 RUF4 RUF4 46 60 24.619806 107.090357 65.8550815 1.818589292 -0.159814 120 32 SH2421 2421 Phe4 3' flank 24.550114 106.708534 65.629324 1.817097931 -0.159828 163 19 SH18078 18078 YLR344W_12_819312_820142_INTRON_20_466 intron 21.876844 107.502493 21.876844 86.625649 54.2512465 1.734409721 -0.160054 75 3 SH9206 9206 snR6 / U6 RNA 5' 22.542279 92.028243 57.285261 1.758042896 -0.160068 70 4 SH2325 2325 Phe3 5' flank 30.644717 121.660925 76.152821 1.881685996 -0.160113 110 97 SH1533 1533 Leu3 3' flank 27.65886 116.68539 72.172125 1.858369493 -0.160173 114 71 SH16425 16425 YER074W_5_306319_307192_INTRON_4_469 intron 40.802175 177.81288 40.802175 138.010705 89.40644 1.951368802 -0.160196 10 30 SH17742 17742 YKL156W_11_158616_159214_INTRON_4_353 3' exon 38.545922 171.928579 38.545922 134.382657 86.4642895 1.936836777 -0.160204 198 28 SH18597 18597 YNL069C_14_494998_493953_INTRON_29_477 intron 26.371827 139.140937 26.371827 113.76911 70.0704685 1.845535021 -0.160211 199 11 SH14774 14774 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu / intergenic 24.090596 127.313197 24.090596 104.222601 64.1565985 1.80724133 -0.160223 172 56 SH13579 13579 MT COX1 Exon 6 22.466568 112.890697 22.466568 91.424129 56.9453485 1.755458255 -0.160264 112 28 SH16954 16954 YGR029W_7_543547_544199_INTRON_87_169 exon/intron 22.844434 116.37591 22.844434 94.531476 58.687955 1.768548977 -0.160284 68 53 SH8511 8511 snR19 / U1 RNA U1 51 72 23.245033 97.809874 60.5274535 1.781952403 -0.160301 148 91 SH2044 2044 Lys3 3' flank 24.907354 108.720612 66.813983 1.824867362 -0.160365 88 74 SH4224 4224 telomerase RNA telomerase 156 172 79.36122 199.920941 139.6410805 2.145013201 -0.160414 162 17 SH2426 2426 Phe5 5' flank 22.037821 87.960075 54.998948 1.740354383 -0.16052 158 66 SH12783 12783 MT COX1 COX1ai1 26.582247 139.85378 26.582247 114.271533 70.42689 1.847738511 -0.160553 92 85 SH14282 14282 MT VAR1 includes 5’ processing site VAR1 22.50488 113.271872 22.50488 91.766992 57.135936 1.756909346 -0.160554 166 21 SH9531 9531 RUF3 RUF3 41 58 41.613185 139.315791 90.464488 1.95647813 -0.160577 205 28 SH249 249 Arg3 3' flank 25.786425 112.442668 69.1145465 1.839569463 -0.160598 6 2 SH2565 2565 Pro2 tRNA-intron/exon 61 75 47.703454 149.099253 98.4013535 1.993001072 -0.160641 131 61 SH13486 13486 MT COX1 intronic 23.048009 118.277543 23.048009 96.229534 59.6387715 1.775528689 -0.160687 158 62 SH1290 1290 Ile2 3' flank 22.632754 92.837913 57.7353335 1.761441679 -0.160712 115 60 SH19321 19321 YPL198W_16_173151_174701_INTRON_12_420 3' exon 27.745081 143.657292 27.745081 116.912211 72.328646 1.859310335 -0.160715 195 52 SH19697 19697 Negative Control 26.252426 113.527022 69.889724 1.844413325 -0.160742 197 70 SH1611 1611 Leu5 5' flank 28.583886 118.397178 73.490532 1.866231391 -0.160752 183 66 SH5399 5399 snR31 snR31 61 77 62.116762 172.071757 117.0942595 2.068535604 -0.160755 26 39 SH12027 12027 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 7021 7041 23.15919 97.154296 60.156743 1.779284315 -0.160815 9 24 SH8821 8821 LSR1 / U2 RNA U2 746 758 30.295357 121.153019 75.724188 1.879234625 -0.160828 47 13 SH8958 8958 snR17a / U3a U3a 76 94 22.343728 90.475135 56.4094315 1.751351723 -0.160869 28 51 SH17371 17371 YIL052C_9_257061_256224_INTRON_38_509 intron 35.188116 163.150784 35.188116 128.962668 82.075392 1.914212966 -0.160878 57 7 SH16880 16880 YGL189C_7_148970_148233_INTRON_1_368 5' exon 3437.452897 8160.001581 3437.452897 4723.548684 4080.500791 3.610713466 -0.160898 196 32 SH3247 3247 Thr1 3' flank 24.30502 105.454086 64.879553 1.812107849 -0.160919 168 10 SH1452 1452 Leu2 tRNA-exon/intron 31 50 22.453785 91.382165 56.917975 1.755249441 -0.160923 15 2 SH21381 21381 Lys3_4 spliced 30.33118 121.215295 75.7732375 1.879515843 -0.160926 191 45 SH313 313 Arg5 5' flank 26.245686 113.525322 69.885504 1.844387102 -0.160971 180 100 SH10623 10623 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 1 21 28.788305 118.743667 73.765986 1.867856152 -0.160974 185 5 SH9988 9988 RUF5-1 RUF5-1 746 763 28.694045 118.5904 73.6422225 1.867126887 -0.160982 183 67 SH7753 7753 snoRNA cluster1 snR76 376.284691 1044.905666 376.284691 669.620975 522.952833 2.71846252 -0.160996 139 46 SH6337 6337 snR43 5' 26.136277 113.276245 69.706261 1.843271788 -0.161017 22 33 SH18327 18327 YML094W_13_82275_82849_INTRON_17_99 exon/intron 26.944001 141.069135 26.944001 115.125134 71.0345675 1.851469741 -0.161036 139 34 SH13521 13521 MT COX1 intronic 24.634867 130.912611 24.634867 107.277744 65.9563055 1.819256321 -0.161057 182 79 SH1381 1381 Leu1 5' flank 23.810407 102.610829 63.210618 1.800790036 -0.161092 187 84 SH13549 13549 MT COX1 intronic 30.751686 151.640435 30.751686 121.888749 76.3202175 1.882639599 -0.161135 172 30 SH19426 19426 YPR132W_16_794960_795762_INTRON_66_430 intron 22.82384 116.272987 22.82384 94.449147 58.6364935 1.768167991 -0.161158 157 83 SH3785 3785 Val4 3' flank 97.977323 230.411519 164.194421 2.215358397 -0.161173 99 98 SH20330 20330 YER074W spliced 23.368515 98.926321 61.147418 1.786378123 -0.161241 143 48 SH18501 18501 YMR194W_13_651144_651909_INTRON_17_479 intron 52.847261 209.175667 52.847261 157.328406 105.0878335 2.021552439 -0.161256 75 97 SH18836 18836 YNL302C_14_62942_61957_INTRON_21_571 intron 22.410518 112.471191 22.410518 91.060673 56.7355955 1.753855618 -0.161276 130 46 SH2175 2175 Met2 tRNA 6 18 60.344247 169.249024 114.7966355 2.05992916 -0.161324 104 17 SH545 545 Cys1 tRNA 26 42 23.580742 100.704172 62.142457 1.79338842 -0.161329 179 70 SH7503 7503 snR71 3' 21.986102 87.624516 54.805309 1.738822631 -0.161401 181 100 SH2342 2342 Phe3 tRNA-exon/intron 36 53 28.809245 118.805066 73.8071555 1.868098468 -0.161449 97 65 SH2311 2311 Phe2 3' flank 24.972654 109.174059 67.0733565 1.82655004 -0.161452 119 66 SH3791 3791 RNaseP 5' flank 22.858035 94.755334 58.8066845 1.769426695 -0.161453 183 39 SH8220 8220 snoRNA cluster 3; snR51 28.218372 145.056737 28.218372 117.838365 73.0283685 1.863491598 -0.161483 44 99 SH5082 5082 snR11 snR11 11 28 35.595533 129.675394 82.6354635 1.917166467 -0.161496 144 8 SH5369 5369 snR31 5' 46.945285 147.949689 97.447487 1.988770644 -0.161515 199 95 SH20654 20654 YIL018W spliced 31.133527 122.524303 76.828915 1.8855247 -0.161567 104 64 SH20162 20162 YDL130W spliced 57.492291 164.751738 111.1220145 2.045800106 -0.161613 77 32 SH15321 15321 YAL003W_1_142172_143158_INTRON_81_446 intron 223.353363 651.608155 223.353363 429.254792 326.3040775 2.513622501 -0.161638 119 3 SH5256 5256 snR30 snR30 131 145 38.780928 134.868666 86.824797 1.938643777 -0.161704 107 67 SH15341 15341 YAL030W_1_87288_87754_INTRON_103_215 intron/exon 24.50782 130.142332 24.50782 106.634512 65.571166 1.816712906 -0.161721 132 89 SH17968 17968 YLR185W_12_522665_523290_INTRON_8_366 intron 24.688334 131.323084 24.688334 107.63475 66.161542 1.820605619 -0.161799 200 47 SH7751 7751 snoRNA cluster1 snR76 1245.059919 3171.628247 1245.059919 1927.568328 1586.314124 3.200389191 -0.1618 114 101 SH6001 6001 snR37 5' 25.365292 111.383595 68.3744435 1.834893805 -0.161859 75 43 SH20166 20166 YDL136W spliced 29.532611 119.999588 74.7660995 1.873704724 -0.161878 170 36 SH11463 11463 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4201 4216 1340.529904 2059.7313 1700.130602 3.230482285 -0.161895 189 15 SH17876 17876 YLR048W_12_242233_243350_INTRON_91_449 exon/intron 23.7774 125.195515 23.7774 102.418115 63.0977575 1.800013925 -0.16191 67 13 SH15579 15579 YBR084C-A_2_415219_414144_INTRON_3_508 intron 25.605128 136.705525 25.605128 112.100397 68.8527625 1.83792137 -0.161921 167 96 SH4704 4704 snR4 snR4 56 74 24.340057 105.729415 65.034736 1.813145382 -0.161922 132 27 SH12793 12793 MT COX1 COX1ai1 23.852019 125.911505 23.852019 103.059486 63.4557525 1.802470999 -0.162009 143 45 SH9707 9707 RUF4 RUF4 311 323 24.286667 105.445316 64.8659915 1.812017061 -0.16203 205 16 SH6293 6293 snR42 snR42 246 260 58.495745 166.397483 112.446614 2.050946382 -0.162091 87 65 SH2341 2341 Phe3 tRNA-exon/intron 31 48 23.724693 101.996469 62.860581 1.798378391 -0.162129 121 36 SH1091 1091 Gly4 5' flank 146.476609 307.90751 227.1920595 2.356393148 -0.16214 11 27 SH10430 10430 RUF8 RUF8 76 93 23.425078 99.500076 61.462577 1.788610765 -0.162259 199 64 SH13786 13786 MT COB intronic 23.903665 126.270231 23.903665 103.366566 63.6351155 1.803696837 -0.162259 148 73 SH7888 7888 snoRNA cluster1 intergenic 22.800955 116.17631 22.800955 94.375355 58.588155 1.767809822 -0.162313 201 41 SH14510 14510 MT 21S rRNA 21S rRNA3 24.541022 130.414866 24.541022 106.873844 65.707433 1.817614501 -0.162398 81 14 SH18994 18994 YOR122C_15_552886_552297_INTRON_14_222 intron 23.927479 126.437876 23.927479 103.510397 63.718938 1.804268529 -0.162427 157 100 SH18480 18480 YMR143W_13_551927_552902_INTRON_25_568 3' exon 64.328444 239.132726 64.328444 175.804282 120.066363 2.079421355 -0.162532 75 61 SH12773 12773 MT COX1 COX1ai1 21.179452 101.73216 21.179452 81.552708 51.36608 1.710676424 -0.162535 192 86 SH3632 3632 Val2 5' flank 34.90458 128.604129 81.7543545 1.912510894 -0.16261 163 69 SH5040 5040 snR10 231-245 + 3' 231 24.261141 105.35827 64.8097055 1.811640048 -0.162672 53 44 SH14683 14683 MT 21S rRNA 21S rRNA4 22.197336 110.652213 22.197336 89.454877 55.8261065 1.74683734 -0.162712 192 37 SH10486 10486 RUF8 RUF8 356 374 30.812041 122.078013 76.445027 1.883349238 -0.162742 91 7 SH15400 15400 YBL050W_2_125087_126081_INTRON_31_146 intron 24.064108 127.353663 24.064108 104.289555 64.1768315 1.807378272 -0.162813 178 98 SH14444 14444 MT 21S rRNA 21S rRNA3 63.658359 237.418219 63.658359 174.75986 119.2091095 2.076309444 -0.162845 181 48 SH702 702 Gln3 tRNA 41 53 39.937747 136.818409 88.378078 1.946344553 -0.162855 166 49 SH931 931 Gly1 5' flank 22.287259 90.210559 56.248909 1.750114103 -0.162952 104 44 SH10085 10085 RUF6 RUF6 271 289 24.230736 105.21471 64.722723 1.811056781 -0.162954 81 38 SH21439 21439 TH297 - control oligo; WTP_221 35.781257 130.076242 82.9287495 1.918705117 -0.162957 93 43 SH9304 9304 RUF1 RUF1 96 112 25.824565 112.672667 69.248616 1.840411098 -0.162968 70 71 SH19856 19856 Negative Control 25.749707 112.499362 69.1245345 1.83963222 -0.162975 83 79 SH15269 15269 MT 9S rRNA 9S 22.213316 110.830991 22.213316 89.617675 55.9154955 1.747532178 -0.163061 177 35 SH17187 17187 YHR021C_8_148660_147862_INTRON_4_553 intron 24.362619 129.311063 24.362619 105.948444 65.1555315 1.813951292 -0.163067 178 67 SH1075 1075 Gly3 3' flank 22.05011 88.296101 55.1731055 1.74172743 -0.163089 173 28 SH15033 15033 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.751128 131.845148 24.751128 108.09402 66.422574 1.822315701 -0.163134 155 41 SH6319 6319 snR42 3' 22.928998 95.501027 59.2150125 1.772431825 -0.163171 47 52 SH7285 7285 snR66 5' 23.805544 102.794358 63.299951 1.801403374 -0.163225 56 78 SH16345 16345 YDR500C_4_1450856_1450201_INTRON_8_396 intron 29.91398 149.605364 29.91398 120.691384 75.302682 1.876810444 -0.163284 129 10 SH21098 21098 YNL044W spliced 33.257952 126.011679 79.6348155 1.901102978 -0.163327 97 55 SH20181 20181 YDL191W spliced 28.707422 118.747252 73.727337 1.867628548 -0.163335 194 14 SH13063 13063 MT COX1 intronic 48.208072 197.33412 48.208072 150.126048 99.16706 1.996367438 -0.163463 175 8 SH6429 6429 snR45 5' - 8 -9 8 27.319559 116.125871 71.722715 1.855656721 -0.163479 105 82 SH1138 1138 His1 5' flank 23.755724 102.403945 63.0798345 1.799890545 -0.163518 70 8 SH8200 8200 snoRNA cluster 3; intergenic 66.054424 243.703229 66.054424 178.648805 122.3516145 2.087609704 -0.163532 213 35 SH1204 1204 Ile1 5' flank 25.788035 112.622368 69.2052015 1.840138737 -0.163544 26 98 SH18995 18995 YOR122C_15_552886_552297_INTRON_14_222 intron 67.873874 248.51194 67.873874 181.638066 124.75597 2.096061337 -0.16359 98 100 SH19318 19318 YPL198W_16_173151_174701_INTRON_12_420 intron 25.265438 135.249766 25.265438 110.984328 68.124883 1.833305769 -0.163636 187 81 SH15275 15275 MT 9S rRNA 9S 22.170388 110.49637 22.170388 89.325982 55.748185 1.746230733 -0.163678 143 56 SH1615 1615 Leu5 5' flank 26.823584 115.013175 70.9183795 1.850758803 -0.163689 54 11 SH11536 11536 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4566 4582 15399.53721 17654.95441 16527.24581 4.218200486 -0.163788 175 69 SH3122 3122 Ser4 tRNA 16 30 44.217492 143.762226 93.989859 1.973080998 -0.163791 83 71 SH13789 13789 MT COB intronic 22.45942 113.170899 22.45942 91.711479 57.0854495 1.756525425 -0.163877 181 47 SH5961 5961 snR36 snR36 261 279 23.110767 97.070528 60.0906475 1.778806884 -0.163973 213 38 SH5907 5907 snR36 5' - 8 -9 8 28.379036 118.247132 73.313084 1.865181489 -0.164006 129 61 SH15814 15814 YDL061C_4_341182_340627_INTRON_1_408 intron 20.698113 97.866701 20.698113 78.168588 49.4333505 1.694020047 -0.164074 117 55 SH16378 16378 YER007C-A_5_166884_166236_INTRON_12_114 5' exon 45.314863 189.841966 45.314863 145.527103 95.420983 1.979643886 -0.164137 194 88 SH18524 18524 YMR225C_13_721402_720959_INTRON_59_205 intron 22.391281 112.568374 22.391281 91.177093 56.784187 1.754227412 -0.164154 161 14 SH21182 21182 YOL047C spliced 24.468703 106.625679 65.547191 1.816554085 -0.164189 150 40 SH1652 1652 Leu5 3' flank 24.18077 105.043767 64.6122685 1.810314989 -0.164207 120 64 SH9978 9978 RUF5-1 RUF5-1 696 715 28.453178 118.380793 73.4169855 1.865796548 -0.164211 150 14 SH13379 13379 MT COX1 intronic / exon 5b 24.736504 131.842029 24.736504 108.105525 66.4210145 1.822305505 -0.164222 117 6 SH10759 10759 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 681 694 46.57032 147.556621 97.0634705 1.987055815 -0.16427 151 67 SH13773 13773 MT COB intronic 24.771172 132.07314 24.771172 108.301968 66.53657 1.823060409 -0.164279 93 84 SH19420 19420 YPR132W_16_794960_795762_INTRON_66_430 intron 24.487536 130.226536 24.487536 106.739 65.613268 1.816991669 -0.164303 178 5 SH1722 1722 Leu7 5' flank 23.658334 101.674243 62.6662885 1.797033974 -0.164397 127 16 SH9235 9235 snR6 / U6 RNA U6 46 62 197.26583 388.846869 293.0563495 2.466951135 -0.164424 70 74 SH6800 6800 snR52 5' 22.19548 89.613109 55.9042945 1.747445171 -0.164563 115 77 SH3743 3743 Val4 5' flank 24.53209 107.00965 65.77087 1.818033587 -0.164603 177 75 SH16066 16066 YDR005C_4_458099_456832_INTRON_7_86 exon/intron 25.803538 137.525594 25.803538 112.722056 69.262797 1.840500025 -0.164609 179 27 SH17205 17205 YHR039C-A_8_187670_187164_INTRON_4_165 exon/intron 47.45659 195.47474 47.45659 149.01815 98.23737 1.992276727 -0.16467 124 55 SH8995 8995 snR17a / U3a U3a 261 273 43.847189 143.236481 93.541835 1.971005885 -0.164683 194 89 SH531 531 Cys1 5' flank 22.325807 90.691507 56.508657 1.752114986 -0.1647 35 53 SH1555 1555 Leu4 5' flank 22.516334 92.265834 57.391084 1.758844428 -0.164754 71 87 SH15382 15382 YBL027W_2_168385_169338_INTRON_3_386 intron 22.685472 115.357348 22.685472 93.671876 58.178674 1.764763819 -0.164771 87 33 SH20480 20480 YGL226C-A spliced 24.489891 106.79395 65.6419205 1.817181279 -0.164805 20 38 SH8965 8965 snR17a / U3a U3a 111 130 23.207971 97.960056 60.5840135 1.782358041 -0.164845 135 72 SH6407 6407 snR43 3' 25.083379 110.082127 67.582753 1.829835879 -0.164882 163 18 SH3765 3765 Val4 tRNA 51 65 23.908909 103.611115 63.760012 1.80454839 -0.164918 115 63 SH723 723 Gln3 3' flank 23.738509 102.407271 63.07289 1.799842731 -0.164935 136 20 SH17981 17981 YLR211C_12_564531_563792_INTRON_19_77 3' exon 38.963763 173.356029 38.963763 135.392266 87.1780145 1.940406974 -0.164989 73 52 SH16268 16268 YDR447C_4_1355542_1354818_INTRON_4_317 exon/intron 23.54102 123.298221 23.54102 100.757201 62.1491105 1.793434917 -0.165063 12 35 SH6816 6816 snR52 5' - 5 -14 5 25.168292 110.570376 67.869334 1.831673587 -0.165079 55 50 SH21880 21880 copy of SH18400 29.761189 120.55218 75.1566845 1.875967613 -0.165081 143 75 SH1141 1141 His1 5' flank 24.771929 108.380387 66.576158 1.823318729 -0.165153 207 82 SH532 532 Cys1 5' flank 22.298629 90.512383 56.405506 1.7513215 -0.165161 66 74 SH20556 20556 YHL001W spliced 29.298398 119.813516 74.555957 1.872482349 -0.165174 49 14 SH3664 3664 Val2 tRNA 61 73 194.494514 384.673496 289.584005 2.46177457 -0.165339 12 26 SH5227 5227 snR30 5' - 7 -14 7 30.719427 122.087915 76.403671 1.883114226 -0.165369 91 80 SH13264 13264 MT COX1 COX1-ai4 22.592605 114.55031 22.592605 92.957705 57.775155 1.761741119 -0.16537 177 26 SH14598 14598 MT 21S rRNA Sce1 endonuc 22.789801 116.371291 22.789801 94.58149 58.6856455 1.768531886 -0.165375 45 90 SH19679 19679 SIR1 2.4 24.886528 109.034419 66.9604735 1.825818516 -0.165386 42 24 SH12884 12884 MT COX1 COX1ai1 23.32214 121.287648 23.32214 98.965508 61.143824 1.786352596 -0.165422 209 76 SH10929 10929 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1531 1544 28.037224 117.764952 72.901088 1.86273401 -0.165456 153 83 SH3724 3724 Val3 3' flank 23.448443 100.030523 61.739483 1.790562988 -0.165537 158 36 SH1503 1503 Leu3 5' flank - tRNA5 5 28.623594 118.737079 73.6803365 1.867351601 -0.165547 201 13 SH14474 14474 MT 21S rRNA 21S rRNA3 23.860135 126.256373 23.860135 103.396238 63.6281865 1.803649545 -0.165561 140 60 SH14880 14880 MT tRNA Ala tRNA 22.575612 114.412289 22.575612 92.836677 57.7061445 1.761222059 -0.165577 134 66 SH18022 18022 YLR306W_12_744151_744851_INTRON_4_137 intron 25.011194 133.754144 25.011194 109.74295 67.377072 1.828512134 -0.165592 210 90 SH14758 14758 MT ORF11; tRNA Leu; tRNA Gln ORF11 30.72298 151.832149 30.72298 122.109169 76.4160745 1.883184724 -0.165635 56 8 SH10807 10807 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 921 939 3706.013956 5061.041005 4383.527481 3.641823734 -0.165645 193 59 SH3244 3244 Thr1 3' flank 23.643319 101.68071 62.6620145 1.797004353 -0.165672 69 63 SH15512 15512 YBR048W_2_332790_333771_INTRON_46_556 intron 88.327675 302.540891 88.327675 215.213216 151.7704455 2.181187209 -0.165685 82 6 SH710 710 Gln3 3' flank 21.565657 84.688399 53.127028 1.725315522 -0.1657 112 92 SH14710 14710 MT tRNA thr2 3' 22.618181 114.820567 22.618181 93.202386 57.9102835 1.762755691 -0.1657 205 10 SH15505 15505 YBR048W_2_332790_333771_INTRON_46_556 intron 26.032975 138.355442 26.032975 113.322467 69.677721 1.843093937 -0.165752 196 94 SH8622 8622 snR19 / U1 RNA U1 606 624 35.34664 129.542228 82.444434 1.916161341 -0.165754 82 101 SH19658 19658 SIR1 2.2 21.462185 83.918846 52.6905155 1.721732448 -0.165763 179 42 SH3129 3129 Ser4 tRNA 51 66 42.489088 141.122541 91.8058145 1.962870188 -0.165773 213 94 SH19963 19963 YBL059W spliced 26.649132 114.745078 70.697105 1.84940163 -0.165827 45 83 SH10023 10023 RUF6 5' 23.700675 102.182457 62.941566 1.798937544 -0.16584 64 26 SH14542 14542 MT 21S rRNA 21S rRNA3 26.121145 138.653244 26.121145 113.532099 69.826622 1.844021033 -0.165847 16 27 SH19946 19946 YBL040C spliced 22.448544 91.811689 57.1301165 1.75686511 -0.165856 9 29 SH5262 5262 snR30 snR30 161 178 23.666312 101.894864 62.780588 1.797825379 -0.165865 105 57 SH1074 1074 Gly3 3' flank 23.547242 100.892868 62.220055 1.793930391 -0.16587 68 81 SH3613 3613 Val1 tRNA 61 73 190.546143 378.595796 284.5709695 2.454190593 -0.165879 78 9 SH14608 14608 MT 21S rRNA Sce1 endonuc 22.42904 113.087137 22.42904 91.658097 57.0435685 1.756206686 -0.165932 95 97 SH1609 1609 Leu5 5' flank 23.829705 103.264302 63.5470035 1.803095077 -0.16599 203 57 SH1117 1117 Gly4 61-72 + 3' flank 61 27.610504 116.938648 72.274576 1.858985553 -0.16601 102 24 SH5307 5307 snR30 snR30 386 404 27.26874 116.167045 71.7178925 1.855627519 -0.166012 67 6 SH3662 3662 Val2 tRNA 51 65 23.708816 102.270902 62.989859 1.799270636 -0.166028 58 91 SH7024 7024 snR62 5' 25.130951 110.447447 67.789199 1.831160502 -0.166053 147 19 SH16931 16931 YGR001C_7_498029_497128_INTRON_36_97 3' exon 26.773223 140.816414 26.773223 115.043191 70.908207 1.850696504 -0.166063 46 17 SH98 98 Ala2 3' flank 42.962043 141.914287 92.438165 1.965851316 -0.166093 185 3 SH10184 10184 RUF6 RUF6 766 780 29.875228 120.794894 75.335061 1.876997144 -0.166116 150 83 SH9381 9381 RUF1 RUF1 481 495 413.259221 728.799519 571.02937 2.756658446 -0.166148 38 101 SH19267 19267 YPL143W_16_282121_282969_INTRON_20_544 intron 27.773685 144.092205 27.773685 117.31852 72.5461025 1.860614085 -0.166219 149 85 SH19955 19955 YBL059C-A spliced 23.300836 98.872713 61.0867745 1.785947194 -0.166254 87 19 SH15416 15416 YBL059W_2_110555_111205_INTRON_287_355 exon/intron 23.786205 125.736979 23.786205 102.950774 63.3684895 1.801873355 -0.166259 167 99 SH9943 9943 RUF5-1 RUF5-1 521 535 23.292334 98.802803 61.0475685 1.785668371 -0.166262 5 70 SH667 667 Gln2 3' flank 26.477289 114.378989 70.428139 1.847746213 -0.166286 192 72 SH18689 18689 YNL112W_14_413636_416278_INTRON_1274_2275 intron 161.324007 492.643303 161.324007 332.319296 246.8216515 2.392383254 -0.166308 118 43 SH1995 1995 Lys3 5' flank 58.555921 166.878529 112.717225 2.051990288 -0.166368 200 24 SH13147 13147 MT COX1 intronic 25.889401 137.927336 25.889401 113.037935 69.463668 1.841757712 -0.166554 80 58 SH18586 18586 YNL050C_14_534978_534075_INTRON_18_108 intron 26.178915 138.891235 26.178915 113.71232 69.9456175 1.844760509 -0.166623 111 54 SH12818 12818 MT COX1 COX1ai1 21.18051 102.080283 21.18051 81.899773 51.5401415 1.712145607 -0.166649 147 94 SH6242 6242 snR42 5' - 11 -9 11 34.729135 128.580773 81.654954 1.911982538 -0.166773 24 28 SH1601 1601 Leu4 3' flank 22.338372 90.992016 56.665194 1.75331638 -0.166777 152 74 SH1148 1148 His1 5' flank 22.887183 95.514359 59.200771 1.772327363 -0.166795 168 36 SH3652 3652 Val2 tRNA 1 15 160.028442 330.367903 245.1981725 2.389517229 -0.166845 106 83 SH10741 10741 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 591 608 34.672003 128.491792 81.5818975 1.911593802 -0.166876 114 13 SH20776 20776 YKL006C-A spliced 28.985267 119.407077 74.196172 1.870381499 -0.166926 92 6 SH17119 17119 YHR010W_8_126513_127484_INTRON_32_592 intron 24.173777 128.404123 24.173777 105.230346 64.7020615 1.810918118 -0.166934 118 65 SH8479 8479 snoRNA cluster 5 3' 26.643919 140.445067 26.643919 114.801148 70.7225335 1.84955781 -0.166944 93 50 SH14200 14200 MT COB Exon6 24.015215 127.375116 24.015215 104.359901 64.187558 1.807450853 -0.166949 72 14 SH3488 3488 Tyr1 5' flank 21.285031 82.706135 51.995583 1.715966452 -0.167036 172 52 SH15270 15270 MT 9S rRNA 9S 22.576688 114.564795 22.576688 92.988107 57.7823975 1.761795558 -0.167043 95 16 SH17583 17583 YJL191W_10_73786_74610_INTRON_11_418 intron 21.960545 108.898887 21.960545 87.938342 54.9494435 1.739963298 -0.167062 6 92 SH21482 21482 copy of SH1655 28.515974 118.647458 73.581716 1.866769912 -0.167064 8 101 SH15890 15890 YDL082W_4_308423_309387_INTRON_5_369 intron 22.857992 117.164962 22.857992 95.30697 59.082481 1.771458724 -0.167114 165 37 SH2194 2194 Met2 3' flank 24.417716 106.594898 65.506307 1.816283116 -0.167181 49 97 SH11584 11584 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4806 4819 9097.678639 11139.77515 10118.72689 4.005125874 -0.167207 67 53 SH19843 19843 Negative Control 25.132662 110.561668 67.847165 1.831531705 -0.167261 61 20 SH6846 6846 snR52 3' 24.69088 108.111503 66.4011915 1.822175872 -0.167266 57 36 SH1803 1803 Leu8 tRNA-intron/exon 41 58 23.442076 100.157717 61.7998965 1.790987748 -0.167294 150 60 SH7026 7026 snR62 5' 71.485589 187.885091 129.68534 2.112890885 -0.167324 154 84 SH8403 8403 snoRNA cluster 5 snR190 40.678158 177.995836 40.678158 138.317678 89.497918 1.951812932 -0.167364 58 78 SH14575 14575 MT 21S rRNA intronic 22.08757 110.086771 22.08757 88.999201 55.5433855 1.744632347 -0.167396 170 77 SH13254 13254 MT COX1 COX1-ai4 24.336742 129.515762 24.336742 106.17902 65.257881 1.814632968 -0.16755 10 34 SH13441 13441 MT COX1 intronic 23.315381 121.441281 23.315381 99.1259 61.2206405 1.786897869 -0.167555 124 75 SH3936 3936 RNase MRP RNaseMRP 96 112 38.505322 134.824261 86.6647915 1.937842697 -0.167621 160 71 SH4145 4145 SRP RNA SRP RNA 616 628 202.853203 398.463833 300.658518 2.478073512 -0.167626 103 74 SH4831 4831 snR8 5' 20.432174 76.559197 48.4956855 1.685703103 -0.167634 117 66 SH20837 20837 YKR095W-A spliced 24.825119 108.888426 66.8567725 1.825145407 -0.167658 109 12 SH18830 18830 YNL302C_14_62942_61957_INTRON_21_571 intron 27.878901 144.505905 27.878901 117.627004 72.7529525 1.861850623 -0.167659 192 66 SH9495 9495 RUF2 3' 22.572772 93.016317 57.7945445 1.761886845 -0.167667 96 67 SH15386 15386 YBL040C_2_142830_142074_INTRON_23_119 5' exon 46.379778 192.890302 46.379778 147.510524 96.945151 1.986526091 -0.167678 164 3 SH14744 14744 MT ORF11; tRNA Leu; tRNA Gln 5' 29.823007 149.625846 29.823007 120.802839 75.312923 1.876869504 -0.167681 30 102 SH3856 3856 RNaseP RNaseP 246 258 32.597836 125.242351 78.9200935 1.897187591 -0.167696 202 34 SH17883 17883 YLR048W_12_242233_243350_INTRON_91_449 intron 37.845098 170.587913 37.845098 133.742815 85.7939565 1.933456696 -0.167713 57 41 SH18708 18708 YNL130C_14_381156_379555_INTRON_30_470 intron 27.357277 142.833871 27.357277 116.476594 71.9169355 1.856831173 -0.167779 214 84 SH20343 20343 YER093C-A spliced 28.223278 118.211711 73.2174945 1.864614863 -0.167884 8 37 SH10082 10082 RUF6 RUF6 256 278 53.801153 159.398351 106.599752 2.027756194 -0.167937 7 61 SH225 225 Arg3 5' flank - tRNA2 5' flank 2 20.280548 75.525608 47.903078 1.68036342 -0.167973 70 36 SH21116 21116 YNL096C spliced 24.973935 109.743761 67.358848 1.828394651 -0.168003 140 11 SH4001 4001 RNase MRP 3' 24.411776 106.631718 65.521747 1.816385468 -0.168013 151 62 SH16559 16559 YER133W_5_432491_433954_INTRON_178_702 intron 24.988009 133.819811 24.988009 109.831802 67.4099055 1.828723718 -0.168117 194 64 SH15924 15924 YDL108W_4_267697_268698_INTRON_29_109 5' exon 29.729915 149.414101 29.729915 120.684186 75.2070505 1.876258557 -0.168203 199 81 SH425 425 Asp1 5' flank 23.893094 103.792009 63.8425515 1.805110235 -0.168207 193 71 SH20049 20049 YBR191W spliced 27.796057 117.494307 72.645182 1.861206816 -0.168233 129 58 SH1380 1380 Leu1 5' flank 24.566691 107.507298 66.0369945 1.819787299 -0.168246 88 33 SH2168 2168 Met2 5' flank 24.592041 107.647758 66.1198995 1.820332185 -0.168249 11 103 SH18306 18306 YML073C_13_124172_123227_INTRON_16_430 intron 27.110944 142.064756 27.110944 115.953812 71.532378 1.854502663 -0.168363 116 36 SH21503 21503 copy of SH2553 1031.615794 1635.412964 1333.514379 3.124997703 -0.168374 126 13 SH21470 21470 copy of SH1240 27.107824 115.948241 71.5280325 1.854476279 -0.168387 196 68 SH7951 7951 snoRNA cluster1 3' 24.882389 133.15301 24.882389 109.270621 67.076505 1.826570426 -0.168412 134 99 SH317 317 Arg5 5' flank 25.895508 113.164265 69.5298865 1.84217152 -0.168422 199 71 SH6430 6430 snR45 5' - 12 -4 12 55.150558 161.560455 108.3555065 2.034850987 -0.168468 193 78 SH13529 13529 MT COX1 intronic 21.563293 105.476664 21.563293 84.913371 53.238332 1.72622444 -0.168537 133 39 SH643 643 Gln2 tRNA 1 18 418.330842 737.710436 578.020639 2.761943346 -0.168543 111 17 SH5904 5904 snR36 5' 25.160675 110.832279 67.996477 1.832486412 -0.168582 70 104 SH12786 12786 MT COX1 COX1ai1 75.774364 269.817898 75.774364 195.043534 135.408949 2.131647367 -0.168638 181 67 SH16364 16364 YEL012W_5_131772_132551_INTRON_6_128 intron 25.983318 138.365058 25.983318 113.38174 69.682529 1.843123904 -0.168649 154 26 SH7286 7286 snR66 5' 27.07627 115.892966 71.484618 1.854212601 -0.168655 167 15 SH7279 7279 snR65 3' 21.958014 88.066383 55.0121985 1.740459001 -0.168675 147 60 SH218 218 Arg3 5' flank 25.020552 110.062996 67.541774 1.829572463 -0.168701 152 33 SH21018 21018 YMR033W spliced 25.400545 112.026487 68.713516 1.837042172 -0.168712 193 6 SH15484 15484 YBL092W_2_45639_46364_INTRON_1_333 intron 24.343971 129.6712 24.343971 106.327229 65.3356 1.815149884 -0.168849 194 29 SH20467 20467 YGL187C spliced 26.463397 114.505234 70.4843155 1.848092487 -0.16889 8 23 SH3923 3923 RNase MRP RNaseMRP 31 48 26.006759 113.45095 69.7288545 1.843412531 -0.168895 57 64 SH20959 20959 YML025C spliced 24.386293 106.566113 65.476203 1.816083487 -0.168911 92 73 SH1318 1318 Ile3 5' flank 23.068685 97.218001 60.143343 1.779187564 -0.168935 198 30 SH5890 5890 snR36 5' 25.387551 112.00941 68.6984805 1.836947131 -0.168937 105 44 SH6243 6243 snR42 5' - 15 -4 15 26.230193 113.971534 70.1008635 1.845723368 -0.168953 137 10 SH21935 21935 copy of SH19618 22.151505 89.672165 55.911835 1.747503746 -0.169019 58 76 SH20005 20005 YBR082C spliced 23.612129 101.767974 62.6900515 1.797198627 -0.16903 185 89 SH21778 21778 copy of SH14042 24.638318 107.971701 66.3050095 1.821546342 -0.16905 110 41 SH10682 10682 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 296 311 47.057369 148.718603 97.887986 1.990729393 -0.16908 3 36 SH20610 20610 YHR079C-A spliced 36.819598 132.175713 84.4976555 1.926844659 -0.169094 175 33 SH5721 5721 snR34 snR34 526 546 25.199283 111.111345 68.155314 1.833499723 -0.169317 128 16 SH7439 7439 snR69 96-101 + 3' 96 23.417724 100.162028 61.789876 1.790917324 -0.169322 11 15 SH19147 19147 YPL075W_16_412249_415357_INTRON_9_759 intron 25.467388 136.689566 25.467388 112.222178 68.844783 1.837871035 -0.169368 207 36 SH5872 5872 snR35 3' 26.499877 114.62042 70.5601485 1.848559486 -0.169404 193 82 SH16973 16973 YGR034W_7_555923_556666_INTRON_20_496 intron 94.163629 318.42004 94.163629 225.256411 159.71002 2.203332164 -0.16946 198 7 SH8681 8681 LSR1 / U2 RNA U2 46 63 24.169925 105.420272 64.7950985 1.811542154 -0.169489 24 90 SH16179 16179 YDR305C_4_1073479_1072737_INTRON_88_176 intron/exon 24.853023 133.058645 24.853023 109.205622 67.0293225 1.82626483 -0.169556 156 61 SH3804 3804 RNaseP 5' flank 41.567046 139.886132 90.726589 1.957734583 -0.169568 68 77 SH15074 15074 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 26.021675 138.548177 26.021675 113.526502 69.7740885 1.843694172 -0.169575 80 33 SH14039 14039 MT COB Cytbi4 23.875189 126.681136 23.875189 103.805947 63.840568 1.805096742 -0.169586 99 72 SH6900 6900 snR56 3' 24.477426 107.126959 65.8021925 1.818240364 -0.169593 173 94 SH13401 13401 MT COX1 intronic 33.617093 159.578526 33.617093 126.961433 80.289263 1.904657471 -0.169625 169 51 SH4436 4436 telomerase RNA telomerase 1216 1235 22.439506 92.100295 57.2699005 1.757926429 -0.169633 52 6 SH18347 18347 YML124C_13_23684_22049_INTRON_26_323 intron 23.314114 121.642097 23.314114 99.327983 61.3210485 1.787609572 -0.169644 46 53 SH2036 2036 Lys3 3' flank 28.050169 118.025298 73.0377335 1.863547288 -0.169646 122 61 SH21426 21426 Trp1 spliced 2116.809166 3104.663281 2610.736224 3.416762995 -0.169693 124 24 SH6263 6263 snR42 snR42 96 112 26.412793 114.438935 70.425864 1.847732184 -0.169715 3 60 SH3838 3838 RNaseP RNaseP 156 173 40.629585 138.408333 89.518959 1.951915023 -0.169751 104 61 SH7051 7051 snR62 snR62 46 67 25.068388 110.420777 67.7445825 1.830874571 -0.16976 162 35 SH7843 7843 snoRNA cluster1 snR74 61.177337 231.567348 61.177337 171.390011 116.283674 2.065518745 -0.169767 94 98 SH15075 15075 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.870998 126.668744 23.870998 103.797746 63.834372 1.80505459 -0.169768 107 74 SH6365 6365 snR43 snR43 66 83 24.041767 104.738759 64.390263 1.808820199 -0.169787 139 15 SH18197 18197 YML024W_13_225889_226697_INTRON_4_401 intron 24.678513 131.938288 24.678513 108.259775 66.469144 1.822620086 -0.16982 88 39 SH3426 3426 Trp1 5' flank 94.866048 226.467099 160.6665735 2.205925532 -0.169826 32 13 SH21338 21338 YPR063C spliced 24.007049 104.553337 64.280193 1.808077172 -0.169857 115 82 SH17293 17293 YHR141C_8_382752_381991_INTRON_5_445 intron 33.477723 159.236827 33.477723 126.759104 80.1184135 1.903732341 -0.169864 70 89 SH15463 15463 YBL087C_2_60732_59815_INTRON_43_546 intron 22.668864 115.704733 22.668864 94.035869 58.3523665 1.766058474 -0.169902 203 28 SH14160 14160 MT COB intronic 32.654163 157.121494 32.654163 125.467331 79.060747 1.897960913 -0.16991 110 29 SH3275 3275 Thr2 5' flank 22.96845 96.489513 59.7289815 1.776185109 -0.169923 10 58 SH13901 13901 MT COB intronic/exon3 23.720052 125.496644 23.720052 102.776592 63.248322 1.801049008 -0.16993 107 8 SH16892 16892 YGL226C-A_7_73156_72747_INTRON_22_170 5' exon 24.466582 130.568494 24.466582 107.101912 65.784247 1.818121908 -0.170008 130 19 SH10414 10414 RUF8 5' - 15 -4 15 25.576099 112.518333 69.047216 1.839146172 -0.170068 24 21 SH5841 5841 snR35 snR35 391 407 48.004038 150.320278 99.162158 1.996345969 -0.170073 136 85 SH18247 18247 YML034W_13_209525_212155_INTRON_1921_2046 exon/intron 245.668797 711.689451 245.668797 467.020654 356.3447255 2.551870335 -0.170091 158 84 SH5205 5205 snR13 3' 25.270942 111.579185 68.4250635 1.835215209 -0.170098 211 67 SH4328 4328 telomerase RNA telomerase 676 695 1077.417088 1702.238265 1389.827677 3.142960956 -0.170099 160 84 SH3209 3209 Thr1 5' flank 46.096949 147.236807 96.666878 1.985277693 -0.170107 89 11 SH21791 21791 copy of SH14651 53.886031 159.719022 106.8025265 2.028581526 -0.170141 84 64 SH7071 7071 snR62 3' 25.820603 113.093907 69.457255 1.841717616 -0.170151 3 24 SH2339 2339 Phe3 tRNA 21 33 30.501288 122.026976 76.264132 1.882320332 -0.17016 52 82 SH7812 7812 snoRNA cluster1 intergenic 26.875833 141.404194 26.875833 115.528361 71.202097 1.852492784 -0.17016 138 45 SH1636 1636 Leu5 tRNA-intron 46 62 21.996609 88.518549 55.257579 1.742391853 -0.170182 23 90 SH13920 13920 MT COB Cytbi3 22.627059 115.345114 22.627059 93.718055 58.172557 1.764718154 -0.170217 163 74 SH5809 5809 snR35 snR35 231 247 62.476017 173.555342 118.0156795 2.071939711 -0.170234 141 36 SH15066 15066 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.696549 115.991236 22.696549 94.294687 58.495618 1.767123334 -0.170249 85 35 SH10161 10161 RUF6 RUF6 651 665 26.219289 114.026062 70.1226755 1.845858478 -0.17027 12 51 SH14789 14789 "MT tRNAs (Lys, Arg1, Gly)" 5' 22.11585 110.617106 22.11585 89.501256 55.808553 1.746700762 -0.170304 155 60 SH18440 18440 YMR142C_13_551206_550205_INTRON_5_406 intron 29.109676 147.917299 29.109676 119.807623 74.4586495 1.871915155 -0.170353 118 49 SH5078 5078 snR11 5' - 9 -9 9 126.876707 278.197831 202.537269 2.30650495 -0.170357 31 61 SH5517 5517 snR32 3' 22.82197 95.329441 59.0757055 1.771408917 -0.170358 179 48 SH10158 10158 RUF6 RUF6 636 657 27.079897 116.007019 71.543458 1.854569928 -0.170374 134 75 SH16244 16244 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 23.279499 121.39297 23.279499 99.113471 61.196485 1.786726478 -0.170375 80 90 SH9979 9979 RUF5-1 RUF5-1 701 718 24.12185 105.23114 64.676495 1.810746476 -0.170408 87 81 SH16522 16522 YER131W_5_423587_424307_INTRON_1_361 intron 39.967345 176.36127 39.967345 137.393925 88.680635 1.947828794 -0.170421 93 27 SH3794 3794 RNaseP 5' flank 28.908369 119.485648 74.1970085 1.870386396 -0.170457 168 96 SH15650 15650 YBR189W_2_604466_605466_INTRON_8_420 intron 23.293712 121.541917 23.293712 99.248205 61.2709585 1.787254674 -0.170533 63 91 SH3614 3614 Val1 66-74 + 3' flank 66 22.629882 93.779322 58.204602 1.764957324 -0.170601 80 43 SH14902 14902 MT tRNA Ile 3' 21.592009 105.899753 21.592009 85.307744 53.4498765 1.727946706 -0.170609 111 70 SH20453 20453 YGL137W spliced 21.892108 87.716138 54.804123 1.738813232 -0.170666 108 84 SH101 101 Ala2 3' flank 23.546995 101.392771 62.469883 1.795670693 -0.170708 135 58 SH10921 10921 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1491 1511 1205.419299 1883.459124 1544.439212 3.188770819 -0.170757 10 49 SH21187 21187 YOL047C spliced 27.734936 117.518431 72.6266835 1.861096213 -0.170824 8 82 SH17118 17118 YHR010W_8_126513_127484_INTRON_32_592 intron 28.949693 147.525382 28.949693 119.575689 74.262691 1.870770682 -0.170848 18 67 SH21202 21202 YOL127W spliced 32.963909 126.018926 79.4914175 1.900320241 -0.170923 35 58 SH13559 13559 MT COX1 Exon 6 23.991409 127.552704 23.991409 104.561295 64.276352 1.80805122 -0.171004 170 75 SH18187 18187 YML024W_13_225889_226697_INTRON_4_401 exon/intron 22.183029 111.304484 22.183029 90.121455 56.152242 1.749367101 -0.171052 171 38 SH20864 20864 YLR093C spliced 22.850798 95.637467 59.2441325 1.772645345 -0.17109 193 13 SH3534 3534 Tyr2 5' flank 24.038186 104.82788 64.433033 1.809108575 -0.171111 131 13 SH13377 13377 MT COX1 intronic 23.853717 126.666719 23.853717 103.813002 63.8333595 1.805047702 -0.171122 13 3 SH3067 3067 Ser3 tRNA 31 49 50.146977 153.804735 101.975856 2.00849736 -0.171157 210 46 SH7025 7025 snR62 5' 26.660286 115.097002 70.878644 1.8505154 -0.171177 175 72 SH8758 8758 LSR1 / U2 RNA U2 431 447 113.841975 257.490047 185.666011 2.268732407 -0.171189 102 82 SH13283 13283 MT COX1 Exon 5a 22.065927 110.246436 22.065927 89.180509 55.623218 1.745256111 -0.171233 177 82 SH15262 15262 MT 9S rRNA 9S 21.802502 107.849908 21.802502 87.047406 54.424954 1.735798071 -0.171265 213 27 SH5437 5437 snR31 3' 22.330473 91.359497 56.844985 1.754692156 -0.171312 118 7 SH17259 17259 YHR101C_8_315970_314876_INTRON_111_197 intron 24.96987 133.97835 24.96987 110.00848 67.489175 1.829234119 -0.171336 65 20 SH19124 19124 YPL075W_16_412249_415357_INTRON_9_759 5' exon 22.826137 117.287717 22.826137 95.46158 59.1438585 1.771909654 -0.171359 121 10 SH17813 17813 YKR057W_11_551293_551878_INTRON_25_346 intron 24.804059 132.895457 24.804059 109.091398 66.9477285 1.825735846 -0.171399 16 71 SH18595 18595 YNL069C_14_494998_493953_INTRON_29_477 intron 22.92991 118.248147 22.92991 96.318237 59.6240735 1.775421644 -0.1714 167 14 SH13761 13761 MT COB intronic 24.110115 128.364619 24.110115 105.254504 64.6823095 1.810785518 -0.171475 198 63 SH8127 8127 snoRNA cluster 3; snR41 28.378528 146.054579 28.378528 118.676051 73.5272895 1.866448556 -0.17151 104 81 SH8091 8091 snoRNA cluster 2 3' 23.856874 126.720083 23.856874 103.863209 63.8600415 1.805229196 -0.171525 139 45 SH18439 18439 YMR142C_13_551206_550205_INTRON_5_406 intron 24.070259 128.111921 24.070259 105.041662 64.5559605 1.809936347 -0.17156 184 50 SH21704 21704 copy of SH11079 23.180608 98.410206 60.795407 1.78387077 -0.171568 175 12 SH16992 16992 YGR118W_7_726968_727725_INTRON_66_385 intron 988.298184 2564.45246 988.298184 1577.154276 1282.72623 3.108133976 -0.171611 30 77 SH19646 19646 SIR1 2.2 23.451649 100.689298 62.0704735 1.792885058 -0.171674 204 61 SH6572 6572 snR47 5' 30.87137 122.704915 76.7881425 1.885294162 -0.171698 112 40 SH13260 13260 MT COX1 COX1-ai4 20.983893 100.847849 20.983893 80.863956 50.9239245 1.706921866 -0.1717 64 7 SH13073 13073 MT COX1 COX1ai3 24.631725 131.792435 24.631725 108.16071 66.3962175 1.822143339 -0.17171 79 29 SH20736 20736 YJL191W spliced 25.882216 113.331277 69.6067465 1.842651335 -0.171714 159 85 SH12068 12068 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7226 7245 23.076817 97.563341 60.320079 1.780461902 -0.171718 89 16 SH278 278 Arg4 5' flank - tRNA2 5' flank 2 23.701065 102.807961 63.254513 1.801091516 -0.171758 205 47 SH3477 3477 Tyr1 5' flank 28.86735 119.495593 74.1814715 1.870295444 -0.171789 86 61 SH15087 15087 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.315596 112.597991 22.315596 91.282395 56.7989955 1.754340655 -0.171791 166 50 SH1473 1473 Leu2 3' flank 22.290893 91.081718 56.6863055 1.753478153 -0.171824 2 55 SH14167 14167 MT COB intronic 49.709223 201.883351 49.709223 153.174128 101.4416755 2.006216414 -0.171878 136 104 SH2689 2689 Pro4 3' flank 22.028761 88.943169 55.485965 1.744183144 -0.171938 27 54 SH18373 18373 YMR079W_13_424988_426058_INTRON_10_165 intron/exon 99.501529 332.865854 99.501529 234.364325 166.932927 2.222542008 -0.171952 214 30 SH1917 1917 Lys1 tRNA 41 57 10142.22199 12294.11491 11218.16845 4.049921957 -0.171957 30 12 SH16067 16067 YDR005C_4_458099_456832_INTRON_7_86 intron 26.233124 139.393528 26.233124 114.160404 70.196764 1.846317092 -0.17196 91 55 SH14776 14776 MT ORF11; tRNA Leu; tRNA Gln intergenic / tRNA Gln 24.04041 127.951625 24.04041 104.911215 64.4758125 1.809396824 -0.171975 187 51 SH19693 19693 Negative Control 23.428345 100.528853 61.978599 1.792241755 -0.172019 214 11 SH20534 20534 YGR148C spliced 118.444701 264.988889 191.716795 2.28266016 -0.172096 88 93 SH13994 13994 MT COB intronic 22.101609 110.65479 22.101609 89.553181 55.827395 1.746847363 -0.172101 195 68 SH19291 19291 YPL175W_16_218629_220087_INTRON_18_117 intron 23.695012 125.492335 23.695012 102.797323 63.2461675 1.801034214 -0.172145 145 50 SH1941 1941 Lys2 5' flank 24.348032 106.625946 65.486989 1.816155023 -0.172156 185 10 SH8504 8504 snR19 / U1 RNA U1 16 35 23.978349 104.588959 64.283654 1.808100555 -0.172218 13 48 SH7830 7830 snoRNA cluster1 intergenic/snR74 25.31599 136.334883 25.31599 112.018893 68.6674415 1.836750866 -0.172242 200 103 SH14365 14365 MT ORF9 and ORF10 (hypothetical) ORF9 23.426229 122.960455 23.426229 100.534226 61.9802275 1.792253166 -0.172243 173 19 SH14671 14671 MT 21S rRNA 21S rRNA4 21.975033 109.509812 21.975033 88.534779 55.254906 1.742370844 -0.172251 61 26 SH4512 4512 U3b (snR17b) U3b 116 133 22.996967 96.956705 59.976836 1.777983551 -0.172261 69 22 SH16944 16944 YGR027C_7_534779_534126_INTRON_1_312 intron 21.501399 105.268447 21.501399 84.767048 53.1342235 1.725374338 -0.172273 20 48 SH7642 7642 snoRNA cluster1 5' 23.146428 120.343863 23.146428 98.197435 60.6719315 1.782987821 -0.172278 58 7 SH10140 10140 RUF6 RUF6 546 563 168.753148 345.41644 257.084794 2.41007639 -0.172316 209 79 SH17356 17356 YIL052C_9_257061_256224_INTRON_38_509 5' exon 24.068881 128.167043 24.068881 105.098162 64.5835215 1.810121722 -0.172338 112 20 SH8748 8748 LSR1 / U2 RNA U2 381 393 23.925283 104.310166 64.1177245 1.806978101 -0.172385 19 88 SH21857 21857 copy of SH17802 462.656186 807.382234 635.01921 2.802786863 -0.17242 201 81 SH16052 16052 YDL191W_4_117665_118518_INTRON_4_494 intron 21.99889 109.746934 21.99889 88.748044 55.373467 1.743301716 -0.172457 13 64 SH12878 12878 MT COX1 COX1ai1 22.355099 113.037546 22.355099 91.682447 57.018773 1.756017867 -0.172558 65 19 SH4038 4038 SRP RNA SRP RNA 81 97 23.002887 97.038789 60.020838 1.778302055 -0.172594 122 100 SH3947 3947 RNase MRP RNaseMRP 151 167 48.950696 152.034721 100.4927085 2.002134552 -0.172646 177 6 SH10685 10685 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 311 326 23.482291 101.053979 62.268135 1.794265858 -0.172703 26 31 SH16741 16741 YGL076C_7_365994_364333_INTRON_565_1032 intron 24.859912 133.375685 24.859912 109.515773 67.1878425 1.827290695 -0.172724 154 47 SH21493 21493 copy of SH2041 24.890499 109.688083 67.289291 1.827945952 -0.172747 98 71 SH11829 11829 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6031 6048 21720.08893 24033.20923 22876.64908 4.35939241 -0.172765 101 95 SH976 976 Gly1 3' flank 26.82518 115.57242 71.1988 1.852472674 -0.172768 68 66 SH9469 9469 RUF2 RUF2 186 203 25.701677 112.977508 69.3395925 1.840981285 -0.172835 109 82 SH12274 12274 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.646596 125.105756 23.646596 102.45916 63.052878 1.799704914 -0.172841 63 32 SH17670 17670 YKL006C-A_11_430270_429836_INTRON_37_177 intron 24.508993 131.087064 24.508993 107.578071 66.043532 1.819830291 -0.172872 60 39 SH21105 21105 YNL050C spliced 24.888889 109.691278 67.2900835 1.827951067 -0.172888 66 27 SH19017 19017 YOR182C_15_678792_678190_INTRON_4_414 intron 68.95693 252.31872 68.95693 184.36179 126.65936 2.102637289 -0.17289 118 19 SH787 787 Glu1 5' flank 22.572087 93.520542 58.0463145 1.763774651 -0.172894 176 79 SH5438 5438 snR31 3' 24.791194 109.153782 66.972488 1.825896433 -0.172963 138 77 SH13143 13143 MT COX1 intronic 131.686296 416.994962 131.686296 286.308666 208.997481 2.320141052 -0.172979 200 87 SH1216 1216 Ile1 tRNA 41 53 2994.725197 4218.926146 3606.825672 3.557125152 -0.172985 198 72 SH4825 4825 snR8 5' 24.066554 105.141676 64.604115 1.810260182 -0.173021 131 84 SH2493 2493 Pro1 5' flank 29.223051 120.147285 74.685168 1.873234362 -0.173032 136 32 SH14376 14376 MT ORF9 and ORF10 (hypothetical) ORF10 22.204275 111.692869 22.204275 90.488594 56.3464345 1.75086644 -0.173091 130 97 SH16987 16987 YGR118W_7_726968_727725_INTRON_66_385 intron 27.451366 143.470971 27.451366 117.019605 72.2354855 1.858750596 -0.173103 115 70 SH16257 16257 YDR424C_4_1319830_1319376_INTRON_26_121 5' exon 32.597607 157.172909 32.597607 125.575302 79.0864545 1.898102106 -0.173127 194 71 SH17069 17069 YGR214W_7_920570_921783_INTRON_91_545 3' exon 23.910212 127.2008 23.910212 104.290588 64.1004 1.80686074 -0.173161 79 53 SH20168 20168 YDL136W spliced 27.783446 117.774307 72.7788765 1.862005347 -0.173171 93 14 SH46 46 Ala1 3' flank 23.903414 104.256867 64.0801405 1.806723455 -0.173207 133 57 SH14361 14361 MT ORF9 and ORF10 (hypothetical) ORF9 21.689935 107.00907 21.689935 86.319135 54.004535 1.732430231 -0.173222 109 78 SH16795 16795 YGL103W_7_310965_311925_INTRON_50_560 3' exon 4660.112804 10876.37607 4660.112804 6217.26327 5438.688037 3.735494148 -0.173273 107 94 SH17881 17881 YLR048W_12_242233_243350_INTRON_91_449 intron 31.804311 155.121151 31.804311 124.31684 78.0605755 1.892431749 -0.173294 109 76 SH16204 16204 YDR381C-A_4_1238839_1238301_INTRON_27_220 3' exon 21.945259 109.346142 21.945259 88.400883 55.173071 1.741727158 -0.17342 49 70 SH1137 1137 His1 5' flank 25.217249 111.570934 68.3940915 1.835018585 -0.17343 96 24 SH3663 3663 Val2 tRNA 56 68 40.582052 138.593015 89.5875335 1.95224758 -0.173449 60 14 SH4984 4984 snR10 5' 20.696822 78.906344 49.801583 1.697243148 -0.173503 72 6 SH405 405 Asn1 3' flank 24.71315 108.766734 66.739942 1.824385825 -0.173515 107 90 SH3319 3319 Thr3 5' flank 21.336579 83.636092 52.4863355 1.720046252 -0.173536 47 104 SH661 661 Gln2 3' flank 26.758753 115.469163 71.113958 1.851954851 -0.173567 139 103 SH20800 20800 YKL157W spliced 26.163317 114.096541 70.129929 1.845903399 -0.173575 84 54 SH19106 19106 YOR312C_15_901173_900242_INTRON_2_427 intron 24.027998 128.003749 24.027998 104.975751 64.5018745 1.809572336 -0.173591 167 70 SH4640 4640 snR3 snR3 116 134 23.122635 98.136488 60.6295615 1.782684427 -0.173638 70 46 SH20815 20815 YKL190W spliced 23.499343 101.297748 62.3985455 1.795174466 -0.173664 83 14 SH12634 12634 MT_15S MT_15S 21.896642 108.929016 21.896642 88.032374 54.964508 1.740082345 -0.173706 155 95 SH17639 17639 YJR145C_10_702761_701720_INTRON_15_270 5' exon 38.111461 171.706056 38.111461 134.594595 86.353028 1.936277571 -0.173733 6 45 SH18334 18334 YML124C_13_23684_22049_INTRON_26_323 5' exon 25.041658 134.658365 25.041658 110.616707 67.8291825 1.831416583 -0.173738 132 72 SH6217 6217 snR40 3' 22.402982 92.199145 57.3010635 1.758162682 -0.173801 205 70 SH18971 18971 YOR096W_15_505793_506766_INTRON_145_545 intron 60.300148 229.627758 60.300148 170.32761 115.313879 2.061881581 -0.173834 52 80 SH14168 14168 MT COB intronic 25.046212 134.702628 25.046212 110.656416 67.851314 1.831558263 -0.173903 28 82 SH17313 17313 YHR203C_8_505526_504472_INTRON_15_283 intron 23.440065 123.263437 23.440065 100.823372 62.1317185 1.793313366 -0.173915 72 44 SH11433 11433 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4051 4067 582.586496 988.917884 785.75219 2.8952856 -0.173921 111 49 SH13505 13505 MT COX1 intronic 40.722196 178.573903 40.722196 138.851707 89.7869515 1.953213226 -0.17394 104 22 SH746 746 Gln4 tRNA 1 18 412.045755 730.620548 571.3331515 2.756889425 -0.173945 40 68 SH77 77 Ala2 21-33 21 33 23.326649 99.873076 61.5998625 1.789579743 -0.173951 47 11 SH11597 11597 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4871 4886 15713.76317 18091.14738 16902.45527 4.227949795 -0.173978 62 90 SH5947 5947 snR36 snR36 191 217 19.880866 73.205264 46.543065 1.667854979 -0.174025 61 35 SH6124 6124 snR39B 5' 24.791593 109.248562 67.0200775 1.826204926 -0.174043 84 77 SH7582 7582 snR189 5' - 2 -19 2 22.292862 91.309734 56.801298 1.75435826 -0.174043 76 42 SH3068 3068 Ser3 tRNA 36 54 47.408823 149.675464 98.5421435 1.993622005 -0.174054 171 6 SH20745 20745 YJL205C-A spliced 22.833365 95.785318 59.3093415 1.773123102 -0.174054 88 97 SH21142 21142 YNL162W spliced 25.6235 112.86895 69.246225 1.840396103 -0.174074 141 24 SH18825 18825 YNL302C_14_62942_61957_INTRON_21_571 intron 141.722223 443.245218 141.722223 302.522995 222.122609 2.346592766 -0.174108 69 27 SH13758 13758 MT COB intronic 22.400106 113.605061 22.400106 92.204955 57.3025305 1.758173801 -0.174109 90 71 SH13378 13378 MT COX1 intronic 23.119091 120.275854 23.119091 98.156763 60.637927 1.782744346 -0.174132 99 73 SH10417 10417 RUF8 RUF8 11 28 30.136053 121.681144 75.9085985 1.880290973 -0.174133 90 72 SH3081 3081 Ser3 101 + 3' flank 101 21.11695 82.048389 51.5826695 1.712503814 -0.174139 113 53 SH18112 18112 YLR367W_12_855877_857316_INTRON_698_1180 intron 24.670298 132.260671 24.670298 108.590373 66.6303355 1.823672 -0.174242 88 50 SH4953 4953 snR9 snR9 171 187 31.744929 124.279049 78.011989 1.892161351 -0.174246 32 88 SH221 221 Arg3 5' flank 33.945835 127.761085 80.85346 1.90769861 -0.174259 199 43 SH20059 20059 YBR255C-A spliced 24.444177 107.336753 65.890465 1.818822572 -0.174276 78 58 SH8499 8499 snR19 / U1 RNA 5' - 8 -9 8 25.894726 113.51824 69.706483 1.843273171 -0.174336 181 91 SH635 635 Gln2 5' flank 22.419196 92.389007 57.4041015 1.758942924 -0.174372 146 31 SH2940 2940 Ser1 5' flank 23.561652 101.900778 62.731215 1.797483699 -0.17439 195 60 SH14299 14299 MT VAR1 includes 5’ processing site VAR1 23.899892 127.238052 23.899892 104.33816 64.119026 1.806986917 -0.174437 19 94 SH3897 3897 RNase MRP 5' 41.898313 140.789376 91.3438445 1.960679286 -0.174491 187 42 SH4066 4066 SRP RNA SRP RNA 221 240 23.965491 104.708195 64.336843 1.808459746 -0.174534 213 17 SH18899 18899 YOL120C_15_94401_93394_INTRON_113_559 intron 21.508019 105.523272 21.508019 85.015253 53.261636 1.726414502 -0.174587 60 84 SH20232 20232 YDR139C spliced 39.710289 137.276343 88.493316 1.946910469 -0.174678 5 56 SH1425 1425 Leu1 3' flank 25.358333 112.282806 68.8205695 1.837718262 -0.174683 129 72 SH15549 15549 YBR078W_2_393082_394818_INTRON_59_388 intron 25.301068 136.452395 25.301068 112.151327 68.7261975 1.837122316 -0.17474 195 27 SH1683 1683 Leu6 5' flank 28.506387 119.07284 73.7896135 1.867995236 -0.17474 17 67 SH9062 9062 snR14 / U4 RNA 5' 24.722353 108.926646 66.8244995 1.824935715 -0.174788 205 83 SH11437 11437 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4071 4084 45.027375 145.878372 95.4528735 1.979789007 -0.174847 89 41 SH19532 19532 CBP1 1.2 25.829072 113.399554 69.614313 1.842698542 -0.174908 195 88 SH6876 6876 snR56 snR56 11 32 193.263229 385.033112 289.1481705 2.461120449 -0.174946 156 66 SH21515 21515 copy of SH3110 22.562832 93.646528 58.10468 1.764211114 -0.174972 209 68 SH12303 12303 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.31206 136.506002 25.31206 112.193942 68.753001 1.837291659 -0.175021 106 49 SH7815 7815 snoRNA cluster1 intergenic 24.055109 128.298752 24.055109 105.243643 64.649376 1.810564337 -0.175023 147 31 SH18974 18974 YOR096W_15_505793_506766_INTRON_145_545 intron 36.491528 167.52721 36.491528 132.035682 84.263605 1.925640035 -0.175024 5 41 SH15433 15433 YBL072C_2_89435_88518_INTRON_1_308 intron 32.750891 157.687889 32.750891 125.936998 79.3439445 1.899513787 -0.175053 73 17 SH4930 4930 snR9 snR9 56 71 29.126698 120.108655 74.6176765 1.872841722 -0.175065 213 89 SH6160 6160 snR39B 3' 24.480085 107.607013 66.043549 1.819830403 -0.175116 213 12 SH16337 16337 YDR500C_4_1450856_1450201_INTRON_8_396 5' exon 22.996805 119.236804 22.996805 97.239999 60.118402 1.779007428 -0.175118 64 10 SH5124 5124 snR11 snR11 221 242 22.50007 93.137322 57.818696 1.762068293 -0.175135 130 34 SH3560 3560 Tyr2 tRNA 71 83 31.072732 123.244332 77.158532 1.887383956 -0.175186 209 86 SH20496 20496 YGL251C spliced 26.562877 115.118276 70.8405765 1.850282087 -0.175191 147 16 SH16549 16549 YER133W_5_432491_433954_INTRON_178_702 intron 22.65334 116.075691 22.65334 94.422351 58.5378455 1.767436734 -0.175208 49 4 SH20542 20542 YGR214W spliced 23.453246 101.068821 62.2610335 1.794216325 -0.175211 206 4 SH16296 16296 YDR450W_4_1359912_1360787_INTRON_48_482 intron 28.305084 146.077256 28.305084 118.772172 73.538628 1.866515523 -0.175302 42 102 SH4217 4217 telomerase RNA telomerase 121 135 28.533637 119.151513 73.842575 1.868306833 -0.175326 112 69 SH7661 7661 snoRNA cluster1 snR78 82.455213 288.205304 82.455213 206.750091 144.602652 2.160176258 -0.175326 181 45 SH1189 1189 Ile1 5' flank 36.057192 131.345411 83.7013015 1.922732211 -0.175357 205 78 SH15679 15679 YBR191W_2_606228_607098_INTRON_12_399 intron 25.944229 138.639661 25.944229 113.695432 69.8198305 1.84397879 -0.175362 110 61 SH19342 19342 YPL241C_16_96258_95372_INTRON_26_105 3' exon 24.801002 133.215859 24.801002 109.414857 67.1079295 1.82677384 -0.175371 28 55 SH1495 1495 Leu3 5' flank 24.635796 108.503499 66.5696475 1.823276257 -0.175477 113 7 SH24 24 Ala1 tRNA 16 28 23.571297 102.098293 62.834795 1.798200203 -0.175496 146 63 SH8373 8373 snoRNA cluster 5 5' 22.805623 117.507861 22.805623 95.702238 59.2539305 1.772717164 -0.175531 153 71 SH16953 16953 YGR029W_7_543547_544199_INTRON_87_169 5' exon 35.186888 164.103511 35.186888 129.916623 82.5517555 1.916726313 -0.175557 87 49 SH21649 21649 copy of SH8769 47.550446 150.027342 98.788894 1.994708123 -0.175623 95 59 SH21626 21626 copy of SH7731 23.479055 101.332116 62.4055855 1.795223462 -0.175645 158 20 SH6923 6923 snR58 5' 22.175906 90.497796 56.336851 1.750792568 -0.175655 27 74 SH21230 21230 YOR234C spliced 25.247341 111.937303 68.592322 1.836275505 -0.175687 157 42 SH18781 18781 YNL265C_14_145280_144279_INTRON_28_132 3' exon 24.849931 133.571621 24.849931 109.72169 67.2858105 1.827923488 -0.175765 187 70 SH2442 2442 Phe5 5' flank - tRNA1 1 23.570852 102.127647 62.8492495 1.798300096 -0.175812 179 74 SH17159 17159 YHR016C_8_138446_136872_INTRON_48_215 5' exon 23.831805 126.907925 23.831805 104.07612 63.9539625 1.805867458 -0.175828 135 99 SH19242 19242 YPL090C_16_378390_377286_INTRON_7_400 intron 22.240077 112.290163 22.240077 91.050086 56.6450815 1.753162206 -0.175896 213 92 SH19763 19763 Negative Control 28.75321 119.546671 74.1499405 1.870110807 -0.17591 193 86 SH4460 4460 telomerase RNA 3' 26.569568 115.182318 70.875943 1.85049885 -0.175987 57 79 SH9899 9899 RUF5-1 RUF5-1 301 318 22.338588 91.877296 57.107942 1.75669651 -0.176013 155 58 SH467 467 Asp1 3' flank 23.867017 104.290813 64.078915 1.80671515 -0.176076 135 64 SH20619 20619 YHR097C spliced 23.509933 101.643671 62.576802 1.796413365 -0.176126 172 66 SH11617 11617 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4971 4986 30160.59352 32153.59153 31157.09253 4.493556924 -0.176138 14 96 SH18369 18369 YMR079W_13_424988_426058_INTRON_10_165 intron 28.860117 147.595757 28.860117 119.73564 74.2978785 1.870976413 -0.176145 136 94 SH4388 4388 telomerase RNA telomerase 976 995 22.380668 92.240954 57.310811 1.758236554 -0.176157 170 100 SH19042 19042 YOR234C_15_779404_778554_INTRON_20_546 intron 104.630718 346.987379 104.630718 243.356661 173.9936895 2.240533497 -0.176337 152 12 SH14813 14813 "MT tRNAs (Lys, Arg1, Gly)" tRNA Arg1 22.807684 117.608433 22.807684 95.800749 59.3042165 1.773085573 -0.176361 73 90 SH17398 17398 YIL069C_9_232366_231550_INTRON_4_412 intron 26.5935 140.854472 26.5935 115.260972 70.927236 1.850813036 -0.176371 137 81 SH10124 10124 RUF6 RUF6 466 482 23.158383 98.715637 60.93701 1.784881141 -0.176421 19 81 SH15945 15945 YDL125C_4_239605_239018_INTRON_98_208 intron 27.422443 143.590425 27.422443 117.167982 72.2952125 1.859109539 -0.176546 103 17 SH21654 21654 copy of SH8989 368.98463 665.004643 516.9946365 2.713486038 -0.176556 76 78 SH6048 6048 snR37 snR37 156 175 29.793077 121.275246 75.5341615 1.878143412 -0.176574 88 38 SH1110 1110 Gly4 tRNA 26 38 26.133756 114.210551 70.1721535 1.846164805 -0.176588 10 104 SH9389 9389 RUF1 RUF1 521 542 27.160912 116.577987 71.8694495 1.856544318 -0.176632 155 18 SH14280 14280 MT VAR1 includes 5’ processing site VAR1 22.156706 111.619644 22.156706 90.462938 56.309822 1.750584155 -0.176958 141 101 SH8967 8967 snR17a / U3a U3a 121 142 22.81311 95.906549 59.3598295 1.773492645 -0.176983 74 6 SH7902 7902 snoRNA cluster1 intergenic 20.855117 100.203837 20.855117 80.34872 50.6019185 1.704166983 -0.177025 35 90 SH17110 17110 YHR001W-A_8_107819_108115_INTRON_7_69 intron 24.757749 133.074092 24.757749 109.316343 67.037046 1.826314869 -0.177034 41 38 SH16308 16308 YDR450W_4_1359912_1360787_INTRON_48_482 intron 22.972741 119.20669 22.972741 97.233949 60.103345 1.778898643 -0.177058 12 104 SH15054 15054 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 27.319571 143.286958 27.319571 116.967387 72.143479 1.858197082 -0.177081 118 25 SH4387 4387 telomerase RNA telomerase 971 988 24.309142 106.826617 65.5678795 1.816691139 -0.177128 78 70 SH20299 20299 YEL012W spliced 24.028744 105.272248 64.650496 1.810571861 -0.177135 194 26 SH16965 16965 YGR034W_7_555923_556666_INTRON_20_496 intron 33985.43633 69723.86431 33985.43633 35739.42799 34862.43216 4.542357682 -0.177176 25 38 SH18101 18101 YLR367W_12_855877_857316_INTRON_698_1180 intron 25.353755 136.775251 25.353755 112.421496 68.8876255 1.838141215 -0.17719 66 62 SH15444 15444 YBL087C_2_60732_59815_INTRON_43_546 exon/intron 22.312635 113.102904 22.312635 91.790269 57.051452 1.756266702 -0.17735 135 30 SH3413 3413 Thr4 3' flank 24.224563 106.386063 65.305313 1.814948515 -0.177475 52 45 SH13877 13877 MT COB intronic 24.401693 130.773276 24.401693 107.371583 65.886638 1.818797347 -0.177492 211 12 SH4317 4317 telomerase RNA telomerase 621 635 27.310109 116.972879 72.141494 1.858185132 -0.177517 115 28 SH1251 1251 Ile2 5' flank 22.65112 94.628152 58.639636 1.768191266 -0.177518 127 70 SH14539 14539 MT 21S rRNA 21S rRNA3 21.264365 103.695011 21.264365 83.430646 52.3475055 1.718895991 -0.17752 117 50 SH18417 18417 YMR133W_13_536206_537608_INTRON_1243_1358 intron 25.710453 137.990361 25.710453 113.279908 69.4951805 1.841954687 -0.177529 87 29 SH18296 18296 YML073C_13_124172_123227_INTRON_16_430 intron 24.46985 131.228177 24.46985 107.758327 66.1140885 1.820294015 -0.177581 190 81 SH3523 3523 Tyr1 3' flank 22.083971 89.924874 56.0044225 1.748222323 -0.177601 34 99 SH12956 12956 MT COX1 COX1ai2 22.315612 113.160461 22.315612 91.844849 57.0802305 1.756485718 -0.177661 106 79 SH19855 19855 Negative Control 23.910961 104.666587 64.288774 1.808135144 -0.177697 100 29 SH90 90 Ala2 3' flank 23.812325 104.125874 63.9690995 1.805970237 -0.177755 31 87 SH20109 20109 YDL064W spliced 66.518471 180.840899 123.679685 2.09229837 -0.177814 108 55 SH20271 20271 YDR447C spliced 43.304528 143.334962 93.319745 1.969973543 -0.177838 129 77 SH15140 15140 MT tRNA Thr1 reverse complement 5' 20.493586 97.269514 20.493586 77.775928 49.134757 1.691388813 -0.177843 177 86 SH3065 3065 Ser3 tRNA 21 35 1564.347569 2389.086527 1976.717048 3.295944508 -0.177904 48 4 SH13411 13411 MT COX1 intronic 23.429567 123.578375 23.429567 101.148808 62.2891875 1.794412666 -0.177912 40 7 SH873 873 Glu2 3' flank 24.819418 109.736606 67.278012 1.82787315 -0.177917 121 52 SH733 733 Gln4 5' flank 30.934868 123.183342 77.059105 1.886823961 -0.177919 69 31 SH11243 11243 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3101 3118 8088.384084 10116.90413 9102.644108 3.959167563 -0.17793 59 86 SH13228 13228 MT COX1 COX1-ai4 23.848272 127.188275 23.848272 104.340003 64.0941375 1.806818308 -0.177943 91 66 SH9303 9303 RUF1 RUF1 91 108 25.514591 112.848275 69.181433 1.839989554 -0.177995 163 93 SH1571 1571 Leu4 tRNA-exon/intron 26 42 26.213323 114.481542 70.3474325 1.847248251 -0.178009 170 43 SH9528 9528 RUF3 RUF3 26 40 24.734617 109.272809 67.003713 1.82609887 -0.178033 113 48 SH1459 1459 Leu2 tRNA-intron/exon 66 82 47.571739 150.270453 98.921096 1.995288919 -0.178276 189 34 SH17797 17797 YKL186C_11_93537_92746_INTRON_71_233 3' exon 28.826978 147.632076 28.826978 119.805098 74.316038 1.871082548 -0.178283 170 44 SH13866 13866 MT COB intronic 22.622068 116.08681 22.622068 94.464742 58.543405 1.767477978 -0.178285 145 31 SH5884 5884 snR35 3' 25.717421 113.343752 69.5305865 1.842175893 -0.178319 114 21 SH7727 7727 snoRNA cluster1 intergenic 24.678766 132.668526 24.678766 108.98976 66.834263 1.824999163 -0.178368 66 88 SH9651 9651 RUF4 RUF4 31 48 22.240674 91.292126 56.7664 1.754091353 -0.178381 205 91 SH1347 1347 Ile3 tRNA 116 128 30.369284 122.304475 76.3368795 1.882734403 -0.178402 149 74 SH1783 1783 Leu8 5' flank 22.897345 96.745749 59.821547 1.77685764 -0.178433 201 52 SH13827 13827 MT COB Cytbi2 35.38286 164.814669 35.38286 130.431809 82.9073345 1.918592953 -0.178436 71 7 SH20253 20253 YDR381W spliced 27.767452 118.05648 72.911966 1.862798809 -0.17847 206 71 SH1073 1073 Gly3 3' flank 24.599607 108.558789 66.579198 1.823338559 -0.178494 209 56 SH542 542 Cys1 tRNA 11 23 39.446815 137.114995 88.280905 1.945866777 -0.178494 157 27 SH13413 13413 MT COX1 intronic 29.249668 148.758283 29.249668 120.508615 74.8791415 1.874360857 -0.178499 137 24 SH16943 16943 YGR027C_7_534779_534126_INTRON_1_312 intron 24.861462 133.885214 24.861462 110.023752 67.442607 1.82893435 -0.178521 89 31 SH520 520 Cys1 5' flank 24.753445 109.427008 67.0902265 1.826659258 -0.178604 162 5 SH19422 19422 YPR132W_16_794960_795762_INTRON_66_430 intron 33.078705 158.755347 33.078705 126.676642 79.8776735 1.902425407 -0.178632 196 10 SH8421 8421 snoRNA cluster 5 snR190 28.612308 147.087671 28.612308 119.475363 74.0438355 1.869488907 -0.17869 48 100 SH5567 5567 snR33 snR33 121 135 25.101951 111.38757 68.2447605 1.834069314 -0.178715 95 86 SH324 324 Arg5 5' flank 22.541773 93.842478 58.1921255 1.76486422 -0.178771 168 16 SH17888 17888 YLR048W_12_242233_243350_INTRON_91_449 intron 23.814579 127.03635 23.814579 104.221771 64.018175 1.806303289 -0.178775 159 45 SH11475 11475 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4261 4277 2653.616059 3808.891315 3231.253687 3.509371056 -0.178808 80 35 SH8914 8914 LSR1 / U2 RNA 3' 23.851589 104.432095 64.141842 1.807141428 -0.178843 139 25 SH427 427 Asp1 5' flank 24.159274 106.138198 65.148736 1.813905994 -0.17885 37 45 SH832 832 Glu2 5' flank 24.248373 106.634787 65.44158 1.815853776 -0.178869 108 69 SH14288 14288 MT VAR1 includes 5’ processing site VAR1 22.40218 114.086904 22.40218 92.684724 57.543452 1.759995911 -0.178891 79 31 SH15186 15186 MT COX3 cox3 23.863296 127.366327 23.863296 104.503031 64.1831635 1.807421119 -0.178918 20 41 SH14657 14657 MT 21S rRNA 21S rRNA4 25.586078 137.660839 25.586078 113.074761 69.3304195 1.840923828 -0.17897 191 42 SH20141 20141 YDL108W spliced 2007.115668 2980.623615 2493.869642 3.396873748 -0.179 149 52 SH18238 18238 YML026C_13_223828_222987_INTRON_48_448 intron 22.554115 115.532009 22.554115 93.977894 58.2660045 1.765415238 -0.179094 93 68 SH21790 21790 copy of SH14650 213.99041 419.087814 316.539112 2.50042738 -0.179138 65 68 SH5783 5783 snR35 snR35 101 119 98.428428 233.599444 166.013936 2.220144546 -0.179178 133 2 SH12545 12545 MT_ORF6 + ORF7 (hypothetical) 3' 21.274229 103.927412 21.274229 83.653183 52.463706 1.719858966 -0.179282 102 101 SH12760 12760 MT COX1 COX1ai1 71.258574 259.036751 71.258574 188.778177 130.0183755 2.114004735 -0.179297 132 87 SH3004 3004 Ser2 5' flank - tRNA2 2 23.09464 98.474528 60.784584 1.783793449 -0.179304 67 12 SH18471 18471 YMR143W_13_551927_552902_INTRON_25_568 intron 23.696425 126.266463 23.696425 103.570038 63.6332315 1.803683979 -0.17933 171 51 SH20873 20873 YLR185W spliced 70.192457 187.050983 128.62172 2.109314313 -0.179357 87 44 SH5719 5719 snR34 snR34 516 534 35.547083 130.769121 83.158102 1.919904568 -0.179411 2 64 SH12123 12123 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7501 7520 22.141804 90.572717 56.3572605 1.750949874 -0.179416 29 35 SH3267 3267 Thr2 5' flank 24.002155 105.314251 64.658203 1.81062363 -0.179427 135 75 SH14289 14289 MT VAR1 includes 5’ processing site VAR1 21.538105 106.199769 21.538105 85.661664 53.5998845 1.729163854 -0.179447 182 76 SH17538 17538 YJL177W_10_90783_91654_INTRON_310_626 intron 23.763083 126.75757 23.763083 103.994487 63.878785 1.805356647 -0.17948 10 54 SH12626 12626 MT_15S MT_15S 23.161943 121.219197 23.161943 99.057254 61.1095985 1.78610943 -0.179495 123 95 SH6557 6557 snR46 3' 40.31116 138.586278 89.448719 1.951574125 -0.179517 109 99 SH2885 2885 Pro8 5' flank 22.414708 92.850283 57.6324955 1.760667425 -0.179518 13 51 SH2215 2215 Phe1 5' flank 23.079723 98.374136 60.7269295 1.783381323 -0.179544 34 51 SH12009 12009 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6931 6949 24.437408 107.744552 66.09098 1.820142192 -0.179555 143 42 SH1393 1393 Leu1 tRNA-exon/intron 36 53 24.445783 107.79155 66.1186665 1.820324086 -0.179559 30 69 SH17861 17861 YLL050C_12_40413_39803_INTRON_15_193 5' exon 36.068954 166.712805 36.068954 131.643851 83.8564025 1.923536227 -0.179575 19 26 SH13255 13255 MT COX1 COX1-ai4 22.192504 112.199629 22.192504 91.007125 56.5998145 1.752815008 -0.179576 15 92 SH21260 21260 YPL079W spliced 37.007174 133.180215 85.0936945 1.92989738 -0.179578 169 39 SH17454 17454 YIL148W_9_68708_69528_INTRON_9_442 intron 28.940646 148.007412 28.940646 120.066766 74.503706 1.872177876 -0.17958 26 90 SH2003 2003 Lys3 5' flank 25.103423 111.4759 68.2896615 1.83435496 -0.179631 60 43 SH12625 12625 MT_15S MT_15S 34.765001 163.24339 34.765001 129.478389 82.121695 1.914457905 -0.179673 212 39 SH3457 3457 Trp1 3' flank 24.156091 106.193145 65.174618 1.814078494 -0.179721 15 25 SH7980 7980 snoRNA cluster 2 snR57 413.675289 1148.559254 413.675289 735.883965 574.779627 2.759501366 -0.179738 189 45 SH17378 17378 YIL052C_9_257061_256224_INTRON_38_509 intron 30.554188 152.237591 30.554188 122.683403 76.6187955 1.88433532 -0.17984 41 15 SH16160 16160 YDR129C_4_715372_713333_INTRON_22_132 intron 22.192881 112.231823 22.192881 91.038942 56.6159115 1.752938504 -0.179878 161 30 SH21582 21582 copy of SH5871 24.818463 109.903269 67.360866 1.828407662 -0.179914 111 31 SH5492 5492 snR32 snR32 121 133 44.075303 144.735945 94.405624 1.974997867 -0.179917 130 42 SH14342 14342 MT VAR1 includes 5’ processing site VAR1 23.189145 121.519212 23.189145 99.330067 61.259606 1.787174199 -0.179933 158 72 SH17144 17144 YHR010W_8_126513_127484_INTRON_32_592 intron/exon 22.519728 115.291605 22.519728 93.771877 58.1458025 1.764518369 -0.17994 128 13 SH12518 12518 MT_ORF6 + ORF7 (hypothetical) ORF6/7 25.405767 137.115631 25.405767 112.709864 69.0578155 1.839212836 -0.179964 84 57 SH3327 3327 Thr3 5' flank 26.43409 115.113089 70.7735895 1.849871223 -0.179974 131 58 SH17726 17726 YKL156W_11_158616_159214_INTRON_4_353 intron 25.109 135.649838 25.109 111.540838 68.324919 1.834579126 -0.180016 58 27 SH19879 19879 Negative Control 25.611886 113.19953 69.405708 1.841395189 -0.180038 96 42 SH2161 2161 Met2 5' flank 52.016374 157.573293 104.7948335 2.020339872 -0.18007 64 3 SH13205 13205 MT COX1 COX1-ai4 22.479649 114.930393 22.479649 93.450744 57.9651965 1.763167312 -0.180098 101 57 SH2937 2937 Ser1 5' flank 25.460538 112.848883 69.1547105 1.839821768 -0.180129 20 73 SH7299 7299 snR66 5' - 7 -14 7 24.73807 109.473467 67.1057685 1.826759854 -0.180146 19 69 SH10383 10383 RUF7 3' 28.90365 120.042091 74.4728705 1.871998094 -0.1802 139 61 SH15755 15755 YCR031C_3_178212_177492_INTRON_8_314 intron 24.461992 131.398859 24.461992 107.936867 66.1994295 1.820854247 -0.180208 64 87 SH11175 11175 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2761 2778 451.694969 794.690944 623.1929565 2.794622536 -0.180249 140 75 SH14276 14276 MT VAR1 includes 5’ processing site VAR1 28.540261 146.988319 28.540261 119.448058 73.9941595 1.869197441 -0.180277 185 17 SH6867 6867 snR56 5' 23.440142 101.484998 62.46257 1.795619849 -0.180284 78 69 SH16299 16299 YDR450W_4_1359912_1360787_INTRON_48_482 intron 24.122416 129.179405 24.122416 106.056989 65.0897025 1.813512287 -0.180333 94 87 SH20995 20995 YML073C spliced 24.405253 107.636952 66.0211025 1.819682772 -0.180403 28 28 SH20739 20739 YJL191W spliced 28.628891 119.605716 74.1173035 1.869919611 -0.180472 110 30 SH11916 11916 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6466 6481 123.662596 274.732103 199.1973495 2.299283555 -0.180473 189 66 SH978 978 Gly1 3' flank 24.112862 106.02244 65.067651 1.813365129 -0.180556 31 72 SH21287 21287 YPL143W spliced 27.686267 118.020444 72.8533555 1.862449559 -0.180614 56 97 SH7255 7255 snR65 snR65 51 70 24.433284 107.814337 66.1238105 1.820357873 -0.180652 58 67 SH13757 13757 MT COB intronic 22.963009 119.477783 22.963009 97.514774 60.2388915 1.779876971 -0.180679 16 30 SH247 247 Arg3 3' flank 22.430501 93.097816 57.7641585 1.761658451 -0.180704 125 101 SH21751 21751 copy of SH12972 21.35374 84.373102 52.863421 1.723155265 -0.180709 94 25 SH2974 2974 Ser1 3' flank 22.491201 93.60818 58.0496905 1.763799909 -0.180716 104 96 SH20069 20069 YCR028C-A spliced 44.378703 145.285157 94.83193 1.976954589 -0.180736 28 89 SH99 99 Ala2 3' flank 25.358322 112.646221 69.0022715 1.838863388 -0.180771 189 63 SH14884 14884 MT tRNA Ala tRNA / 3' 22.495602 115.15997 22.495602 93.664368 58.079985 1.764026496 -0.180912 177 84 SH13388 13388 MT COX1 exon 5b / intronic 21.894531 109.578929 21.894531 88.684398 55.2894645 1.742642384 -0.180946 128 24 SH14109 14109 MT COB intronic 21.2412 103.790552 21.2412 83.549352 52.395276 1.719292132 -0.180994 195 3 SH3905 3905 RNase MRP 5' 33.248733 127.092027 80.17038 1.904013942 -0.181004 125 95 SH16381 16381 YER007C-A_5_166884_166236_INTRON_12_114 intron 23.106444 120.855134 23.106444 98.74869 60.927567 1.784813836 -0.181038 119 28 SH18303 18303 YML073C_13_124172_123227_INTRON_16_430 intron 24.437229 131.312073 24.437229 107.874844 66.1560365 1.820569478 -0.181107 179 57 SH9273 9273 RUF1 5' 24.522549 108.3528 66.4376745 1.822414423 -0.181127 169 53 SH5406 5406 snR31 snR31 96 108 40.986597 139.791698 90.3891475 1.95611629 -0.181242 207 94 SH12753 12753 MT COX1 COX1ai1 24.183564 129.661269 24.183564 106.477705 65.3306345 1.815116876 -0.181301 126 57 SH15666 15666 YBR189W_2_604466_605466_INTRON_8_420 intron/exon 23.882738 127.691852 23.882738 104.809114 64.345926 1.808521055 -0.181334 180 3 SH2514 2514 Pro1 61-72 + 3' flank 61 30.547427 122.762832 76.6551295 1.884541222 -0.18136 69 42 SH12616 12616 MT_15S MT_15S 21.325905 104.544318 21.325905 84.218413 52.772159 1.722404862 -0.181361 210 12 SH7055 7055 snR62 snR62 66 83 42.27415 141.913182 92.093666 1.964229761 -0.181404 51 61 SH7944 7944 snoRNA cluster1 3' 23.553221 125.121354 23.553221 102.568133 63.060677 1.799758629 -0.181437 166 67 SH1998 1998 Lys3 5' flank 24.159402 106.354638 65.25702 1.814627238 -0.181437 86 59 SH7242 7242 snR65 5' - 7 -14 7 26.526473 115.419011 70.972742 1.851091584 -0.18148 108 52 SH8382 8382 snoRNA cluster 5 5' 43.535918 186.522174 43.535918 143.986256 93.761087 1.972022634 -0.181555 59 45 SH18436 18436 YMR142C_13_551206_550205_INTRON_5_406 intron 27.211155 143.214239 27.211155 117.003084 72.1071195 1.857978147 -0.181639 90 44 SH17007 17007 YGR148C_7_788173_787307_INTRON_1_392 intron 25.722722 138.2803 25.722722 113.557578 69.64015 1.842859698 -0.181663 109 21 SH9287 9287 RUF1 RUF1 11 27 23.012122 98.023157 60.5176395 1.78188198 -0.181665 91 4 SH13837 13837 MT COB Cytbi2 22.037453 110.963167 22.037453 89.925714 55.9815835 1.748045179 -0.181678 191 87 SH20778 20778 YKL006C-A spliced 37.114156 133.496415 85.3052855 1.930975941 -0.1817 80 86 SH18484 18484 YMR194W_13_651144_651909_INTRON_17_479 exon/intron 28.8512 147.898755 28.8512 120.047555 74.4493775 1.871861071 -0.181778 92 67 SH3357 3357 Thr3 3' flank 23.42116 101.480906 62.451033 1.795539626 -0.181792 39 2 SH10650 10650 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 136 149 1356.355312 2108.923565 1732.639439 3.238708196 -0.181838 110 45 SH19867 19867 Negative Control 23.514156 102.281418 62.897787 1.798635365 -0.18188 148 40 SH13216 13216 MT COX1 COX1-ai4 23.043799 120.353737 23.043799 98.309938 60.6768685 1.783023159 -0.181884 160 43 SH21905 21905 copy of SH19400 22.488266 93.698824 58.093545 1.764127879 -0.181893 91 97 SH2601 2601 Pro3 5' flank 22.091814 90.395951 56.2438825 1.750075292 -0.18191 36 41 SH6125 6125 snR39B 5' 49.230498 153.226035 101.2282665 2.0053018 -0.181977 48 16 SH18424 18424 YMR133W_13_536206_537608_INTRON_1243_1358 3' exon 22.463952 114.972751 22.463952 93.508799 57.9863755 1.763325964 -0.182039 19 8 SH19254 19254 YPL129W_16_305297_306136_INTRON_10_114 3' exon 27.92356 145.446868 27.92356 118.523308 73.223434 1.864650092 -0.182052 197 38 SH2722 2722 Pro5 5' flank - tRNA5 5 48.757758 152.478258 100.618008 2.002675715 -0.182063 112 49 SH4326 4326 telomerase RNA telomerase 666 684 53.870743 160.710342 107.2905425 2.030561441 -0.182076 14 59 SH13019 13019 MT COX1 COX1ai2 22.439798 114.763979 22.439798 93.324181 57.8819895 1.76254345 -0.182226 113 36 SH20543 20543 YGR214W spliced 22.608032 94.732053 58.6700425 1.768416403 -0.182226 173 37 SH5102 5102 snR11 snR11 111 127 215.484966 422.300956 318.892961 2.503644933 -0.182236 171 83 SH10495 10495 RUF8 RUF8 401 417 32.494575 125.976466 79.2355205 1.898919915 -0.18231 167 55 SH1053 1053 Gly3 tRNA 1 15 156.129254 327.23804 241.683647 2.383247266 -0.182331 198 11 SH6377 6377 snR43 snR43 126 141 28.537957 119.564154 74.0510555 1.869531253 -0.182353 65 90 SH19095 19095 YOR312C_15_901173_900242_INTRON_2_427 intron 23.890375 127.828051 23.890375 104.937676 64.4140255 1.808980441 -0.182381 199 98 SH2618 2618 Pro3 tRNA-intron 41 58 23.142101 99.191826 61.1669635 1.786516921 -0.182456 59 101 SH2026 2026 Lys3 tRNA 76 88 29.195891 120.653752 74.9248215 1.874625717 -0.182492 87 72 SH19417 19417 YPR132W_16_794960_795762_INTRON_66_430 intron 22.774836 117.917072 22.774836 96.142236 59.458536 1.774214212 -0.182583 22 19 SH20894 20894 YLR287C-A spliced 24.394386 107.761385 66.0778855 1.820056137 -0.182593 129 48 SH21293 21293 YPL175W spliced 30.729224 123.126496 76.92786 1.886083651 -0.182593 20 80 SH13444 13444 MT COX1 intronic 24.448928 131.515084 24.448928 108.066156 66.257542 1.821235321 -0.182594 64 103 SH716 716 Gln3 3' flank 24.298373 107.227681 65.763027 1.817981795 -0.182617 154 58 SH21436 21436 TH296 - bright yellow; WTP_218 22.860848 96.861494 59.861171 1.777145208 -0.182646 186 32 SH3110 3110 Ser4 5' flank 24.273017 107.089801 65.681409 1.817442461 -0.182659 7 9 SH12981 12981 MT COX1 COX1ai2 22.66792 116.935023 22.66792 95.267103 58.9675115 1.7706128 -0.182661 68 38 SH9225 9225 snR6 / U6 RNA 5' - 12 -4 12 24.861934 110.388147 67.6250405 1.830107538 -0.182705 54 5 SH21025 21025 YMR079W spliced 29.928694 121.854439 75.8915665 1.880193517 -0.182718 201 26 SH19331 19331 YPL218W_16_138697_139408_INTRON_29_167 intron/exon 26.028593 139.368238 26.028593 114.339645 70.184119 1.846238853 -0.182755 99 100 SH16893 16893 YGL226C-A_7_73156_72747_INTRON_22_170 5' exon 25.128655 136.024446 25.128655 111.895791 68.512223 1.835768059 -0.182805 28 38 SH6828 6828 snR52 snR52 46 64 36.666309 132.843925 84.755117 1.928165928 -0.182862 189 64 SH1823 1823 Leu8 3' flank 22.365173 92.761716 57.5634445 1.760146773 -0.182875 194 85 SH18415 18415 YMR133W_13_536206_537608_INTRON_1243_1358 5' exon 110.91077 364.431183 110.91077 254.520413 182.7155915 2.261775608 -0.182892 119 71 SH19670 19670 SIR1 2.4 1295.697379 2025.742376 1660.719878 3.220296384 -0.182958 34 75 SH17204 17204 YHR039C-A_8_187670_187164_INTRON_4_165 5' exon 44.958617 190.348596 44.958617 146.389979 95.674298 1.980795284 -0.183075 203 80 SH20956 20956 YML024W spliced 94.906898 228.309358 161.608128 2.2084632 -0.183131 204 84 SH5723 5723 snR34 536-550 + 3' 536 24.541583 108.633629 66.587606 1.823393401 -0.183176 47 40 SH9627 9627 RUF4 5' 22.780816 96.252872 59.516844 1.774639894 -0.183203 162 37 SH14318 14318 MT VAR1 includes 5’ processing site VAR1 22.200789 112.622915 22.200789 91.422126 56.8114575 1.754435931 -0.183205 149 89 SH5850 5850 snR35 snR35 436 453 151.680824 320.219195 235.9500095 2.372819999 -0.18324 94 23 SH17374 17374 YIL052C_9_257061_256224_INTRON_38_509 intron 24.374843 131.08271 24.374843 107.707867 66.041355 1.819815975 -0.18325 191 19 SH18699 18699 YNL130C_14_381156_379555_INTRON_30_470 intron 23.627882 126.026455 23.627882 103.398573 63.5132275 1.802864182 -0.18325 39 63 SH6827 6827 snR52 snR52 41 60 25.613283 113.396492 69.5048875 1.842015345 -0.183259 179 62 SH204 204 Arg2 3' flank 24.133858 106.366222 65.25004 1.814580782 -0.18328 87 58 SH20284 20284 YDR471W spliced 30.575098 122.923707 76.7494025 1.885075003 -0.183328 59 4 SH14947 14947 MT tRNA Met 5' / tRNA 22.339636 113.932888 22.339636 92.593252 57.466444 1.759414324 -0.183342 18 33 SH316 316 Arg5 5' flank 22.5374 94.256768 58.397084 1.766391162 -0.183356 82 4 SH6662 6662 snR48 3' 108.280045 250.311895 179.29597 2.253570528 -0.183368 66 50 SH11786 11786 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5816 5829 1497.713132 2306.615797 1902.164465 3.279248064 -0.183415 161 22 SH7643 7643 snoRNA cluster1 5' 22.224252 112.865781 22.224252 91.641529 56.9328905 1.755363234 -0.183458 214 37 SH19850 19850 Negative Control 30.349714 122.580119 76.4649165 1.883462219 -0.183584 83 67 SH18748 18748 YNL162W_14_331319_332151_INTRON_5_516 intron 24.039223 128.906006 24.039223 105.866783 64.953003 1.812599235 -0.183611 155 45 SH20501 20501 YGR001C spliced 22.908348 97.352954 60.130651 1.779095906 -0.183613 161 21 SH7273 7273 snR65 3' 23.135768 99.259154 61.197461 1.786733404 -0.18364 43 78 SH8199 8199 snoRNA cluster 3; intergenic 48.987969 200.964072 48.987969 152.976103 100.982036 2.004244123 -0.183684 163 22 SH13045 13045 MT COX1 COX1ai2 22.053577 111.302117 22.053577 90.24854 56.1510585 1.749357948 -0.183692 86 12 SH16592 16592 YFL034C-A_6_64931_64242_INTRON_13_333 intron 21.801991 108.992319 21.801991 88.190328 54.9961595 1.740332363 -0.183779 74 96 SH11914 11914 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6456 6473 21299.47795 23794.01729 22546.74762 4.353083904 -0.183823 99 76 SH19408 19408 YPR098C_16_729525_728944_INTRON_48_143 intron 26.289662 140.306156 26.289662 115.016494 70.653078 1.849131087 -0.183879 174 14 SH12828 12828 MT COX1 COX1ai1 22.448483 115.009436 22.448483 93.560953 58.004718 1.76346332 -0.183902 130 21 SH8969 8969 snR17a / U3a U3a 131 147 23.551486 102.814762 63.183124 1.800601095 -0.183918 209 26 SH18526 18526 YMR225C_13_721402_720959_INTRON_59_205 intron 24.556702 132.338451 24.556702 108.781749 66.6692255 1.82392541 -0.183921 153 100 SH18610 18610 YNL069C_14_494998_493953_INTRON_29_477 intron 25.144853 136.233385 25.144853 112.088532 68.6166925 1.83642978 -0.18396 14 103 SH10724 10724 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 506 525 27.476406 117.755857 72.6161315 1.861033109 -0.184005 73 88 SH13190 13190 MT COX1 Exon4 26.566408 141.23348 26.566408 115.667072 71.11674 1.85197184 -0.184018 135 76 SH16955 16955 YGR029W_7_543547_544199_INTRON_87_169 intron 23.646656 126.289283 23.646656 103.642627 63.6446415 1.803761845 -0.18403 11 43 SH9393 9393 RUF1 541-550 + 3' 541 99.697254 236.352014 168.024634 2.225372958 -0.184031 24 15 SH19831 19831 Negative Control 24.645578 109.293691 66.9696345 1.825877929 -0.184085 101 17 SH19962 19962 YBL059W spliced 41.78874 141.308198 91.548469 1.961651086 -0.184098 138 26 SH17333 17333 YIL018W_9_316766_317930_INTRON_5_404 intron 22.970585 119.891931 22.970585 97.921346 60.4459655 1.781367319 -0.184104 204 69 SH5184 5184 snR13 snR13 76 92 54.499772 161.88989 108.194831 2.034206513 -0.184209 103 71 SH4773 4773 snR5 snR5 36 52 127.287119 281.170104 204.2286115 2.310116585 -0.184228 106 5 SH18178 18178 YLR448W_12_1028848_1029762_INTRON_16_399 intron 30.884389 153.366301 30.884389 123.481912 77.1831505 1.887522502 -0.184241 4 3 SH19137 19137 YPL075W_16_412249_415357_INTRON_9_759 intron 24.693742 133.284325 24.693742 109.590583 67.1421625 1.826995325 -0.184398 81 59 SH16331 16331 YDR471W_4_1401759_1402553_INTRON_32_415 intron 30.362163 152.012396 30.362163 122.650233 76.506198 1.88369662 -0.184432 35 10 SH17177 17177 YHR021C_8_148660_147862_INTRON_4_553 intron 36.521712 168.234703 36.521712 132.712991 84.6173515 1.927459428 -0.18445 90 94 SH7294 7294 snR66 5' 29.624258 121.465103 75.5446805 1.878203889 -0.184453 53 95 SH19208 19208 YPL081W_16_404945_406039_INTRON_8_508 intron 24.996894 135.305412 24.996894 111.308518 68.152706 1.833483104 -0.184567 27 83 SH9675 9675 RUF4 RUF4 151 166 24.410802 108.026508 66.218655 1.820980355 -0.184641 160 103 SH16546 16546 YER133W_5_432491_433954_INTRON_178_702 intron 28.013052 145.835166 28.013052 118.822114 73.417583 1.865800083 -0.184645 35 67 SH1539 1539 Leu3 3' flank 29.859842 121.857826 75.858834 1.880006163 -0.184657 87 80 SH7519 7519 snR79 5' 22.276882 92.197356 57.237119 1.757677766 -0.184674 177 67 SH1289 1289 Ile2 3' flank 22.053487 90.34259 56.1980385 1.749721157 -0.184696 116 51 SH2196 2196 Met2 3' flank 24.054019 106.040248 65.0471335 1.813228163 -0.184706 5 2 SH14157 14157 MT COB intronic 24.676117 133.198202 24.676117 109.522085 67.099101 1.826716701 -0.184751 71 50 SH13110 13110 MT COX1 COX1ai3 23.523064 125.184612 23.523064 102.661548 63.092306 1.799976401 -0.184772 48 18 SH9467 9467 RUF2 RUF2 176 193 24.694275 109.631473 67.162874 1.827129272 -0.184838 28 52 SH14955 14955 MT tRNA Met 3' 22.673735 117.21043 22.673735 95.536695 59.105215 1.771625801 -0.184925 169 10 SH2220 2220 Phe1 5' flank 26.580088 115.755748 71.167918 1.852284261 -0.184946 108 62 SH10359 10359 RUF7 RUF7 406 423 24.904792 110.83036 67.867576 1.831662338 -0.185026 80 13 SH18043 18043 YLR333C_12_796335_795573_INTRON_1_423 intron 22.864773 118.99805 22.864773 97.133277 59.999025 1.778144193 -0.185049 2 62 SH20442 20442 YGL087C spliced 24.573129 108.972693 66.772911 1.82460031 -0.185079 111 83 SH4649 4649 snR3 snR3 161 176 28.858223 120.252154 74.5551885 1.872477873 -0.185101 82 90 SH17995 17995 YLR287C-A_12_713158_712537_INTRON_4_433 intron 23.959719 128.508951 23.959719 105.549232 64.7544755 1.81126979 -0.185118 101 86 SH20812 20812 YKL186C spliced 24.622402 109.254477 66.9384395 1.825675584 -0.185143 136 63 SH20838 20838 YLL050C spliced 23.806295 104.698109 64.252202 1.807888016 -0.185148 51 78 SH6361 6361 snR43 snR43 46 63 29.059482 120.586634 74.823058 1.874035454 -0.185168 55 14 SH5820 5820 snR35 snR35 286 300 29.249665 120.898164 75.0739145 1.875489061 -0.185174 22 74 SH18233 18233 YML026C_13_223828_222987_INTRON_48_448 intron 24.731114 133.603925 24.731114 109.872811 67.3019625 1.828027728 -0.18524 58 50 SH220 220 Arg3 5' flank 137.120393 297.188718 217.1545555 2.336768944 -0.185256 185 16 SH15333 15333 YAL030W_1_87288_87754_INTRON_103_215 5' exon 29.951712 150.99625 29.951712 122.044538 75.998125 1.880802878 -0.185314 70 90 SH13363 13363 MT COX1 intronic 24.564502 132.524289 24.564502 108.959787 66.7621445 1.824530278 -0.185494 152 54 SH17759 17759 YKL157W_11_154993_158183_INTRON_282_664 intron 22.715731 117.655612 22.715731 95.939881 59.327806 1.773258288 -0.185494 202 59 SH4562 4562 U3b (snR17b) U3b 366 382 26.52334 115.664021 71.0936805 1.851830998 -0.185593 191 2 SH11528 11528 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4526 4543 643.416183 1087.572454 865.4943185 2.937264221 -0.185743 141 4 SH11889 11889 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6331 6348 766.0649 1268.856912 1017.460906 3.007517731 -0.185782 197 72 SH10521 10521 RUF8 RUF8 531 551 23.994206 105.80006 64.897133 1.812225511 -0.185827 153 99 SH21310 21310 YPL241C spliced 25.185673 112.492568 68.8391205 1.837835313 -0.185933 3 73 SH18076 18076 YLR344W_12_819312_820142_INTRON_20_466 intron 22.831243 118.778572 22.831243 96.947329 59.889286 1.777349135 -0.185985 183 103 SH16505 16505 YER117W_5_396765_397649_INTRON_43_513 intron 24.494305 132.105942 24.494305 108.611637 66.552971 1.823167448 -0.186025 161 11 SH19530 19530 CBP1 1.2 22.71902 96.020457 59.3697385 1.773565136 -0.186036 189 86 SH14127 14127 MT COB Exon5 24.731411 133.674991 24.731411 109.94358 67.3374955 1.82825696 -0.186041 38 57 SH13235 13235 MT COX1 COX1-ai4 22.975909 120.139812 22.975909 98.163903 60.569906 1.7822569 -0.186073 95 38 SH12943 12943 MT COX1 COX1ai2 25.944594 139.289543 25.944594 114.344949 70.1447715 1.845995305 -0.186079 81 57 SH11606 11606 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4916 4931 29640.35986 31872.29002 30756.32494 4.487934441 -0.18615 174 92 SH16072 16072 YDR005C_4_458099_456832_INTRON_7_86 3' exon 23.906501 128.253637 23.906501 105.347136 64.6268185 1.810412777 -0.186258 21 31 SH15070 15070 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.471174 115.457594 22.471174 93.98642 58.228797 1.765137818 -0.186289 199 61 SH19813 19813 Negative Control 26.421017 115.472679 70.946848 1.850933106 -0.186345 59 70 SH3077 3077 Ser3 tRNA 81 96 1369.585493 2133.670772 1751.628133 3.243441912 -0.186372 104 60 SH15969 15969 YDL130W_4_229906_230527_INTRON_115_415 3' exon 25.180246 136.687705 25.180246 112.507459 68.8438525 1.837865165 -0.186449 105 42 SH14250 14250 MT tRNA Ser 3' 24.06083 129.285505 24.06083 106.224675 65.1427525 1.813866105 -0.186465 178 95 SH1392 1392 Leu1 tRNA-exon/intron 31 50 24.413246 108.196473 66.3048595 1.821545359 -0.186483 4 93 SH19872 19872 Negative Control 30.08516 122.328438 76.206799 1.88199372 -0.186487 181 65 SH5653 5653 snR34 snR34 186 203 122.09065 273.194433 197.6425415 2.29588043 -0.186584 103 5 SH9980 9980 RUF5-1 RUF5-1 706 725 24.828637 110.543037 67.685837 1.830497804 -0.186651 169 31 SH15328 15328 YAL003W_1_142172_143158_INTRON_81_446 intron 24.901271 134.854249 24.901271 110.952978 67.9271245 1.83204323 -0.186663 55 65 SH526 526 Cys1 5' flank 14629.72243 17130.74723 15880.23483 4.20085692 -0.186765 132 59 SH7934 7934 snoRNA cluster1 snR72/3' 27.302469 143.835184 27.302469 117.532715 72.417592 1.85984408 -0.186792 73 34 SH2331 2331 Phe3 5' flank - tRNA2 2 23.391296 101.755658 62.573477 1.796390288 -0.186866 141 83 SH6283 6283 snR42 snR42 196 213 36.650544 133.087762 84.869153 1.928749868 -0.186893 75 25 SH15759 15759 YCR031C_3_178212_177492_INTRON_8_314 intron 25.548818 138.014084 25.548818 113.465266 69.507042 1.842028807 -0.186925 213 54 SH4087 4087 SRP RNA SRP RNA 326 338 32.630916 126.486587 79.5587515 1.900687959 -0.187041 188 90 SH830 830 Glu2 5' flank 24.678418 109.732851 67.2056345 1.827405686 -0.187051 20 103 SH9172 9172 snR7 U5 RNA U5 131 147 26.631371 116.007704 71.3195375 1.853208518 -0.187112 89 42 SH3995 3995 RNase MRP 3' 21.771953 88.253031 55.012492 1.740461318 -0.187118 140 6 SH16288 16288 YDR450W_4_1359912_1360787_INTRON_48_482 exon/intron 21.614933 107.596247 21.614933 86.981314 54.2981235 1.734784821 -0.18721 162 15 SH18234 18234 YML026C_13_223828_222987_INTRON_48_448 intron 24.284247 130.820497 24.284247 107.53625 65.9102485 1.818952949 -0.187217 138 89 SH15252 15252 MT tRNA fMet 3' 23.038327 120.841679 23.038327 98.803352 60.9208395 1.784765879 -0.187218 130 51 SH14707 14707 MT tRNA thr2 3' 23.136602 121.767868 23.136602 99.631266 61.383934 1.788054718 -0.187219 210 93 SH3669 3669 Val2 3' flank 24.492353 108.709658 66.6010055 1.823480786 -0.187303 93 95 SH14286 14286 MT VAR1 includes 5’ processing site VAR1 22.158591 112.623491 22.158591 91.4649 56.8117455 1.754438133 -0.187323 173 8 SH12842 12842 MT COX1 COX1ai1 22.873973 119.312835 22.873973 97.438862 60.1564175 1.779281965 -0.187342 165 76 SH16361 16361 YEL012W_5_131772_132551_INTRON_6_128 intron 22.440118 115.26993 22.440118 93.829812 58.134965 1.764437415 -0.187364 189 31 SH7164 7164 snR63 3' 26.616339 115.991661 71.304 1.853113894 -0.187417 68 7 SH17121 17121 YHR010W_8_126513_127484_INTRON_32_592 intron 21.502338 106.593224 21.502338 86.090886 53.796612 1.730754926 -0.187452 117 20 SH15171 15171 MT tRNA Val 3' 22.566998 116.470815 22.566998 94.903817 58.7354075 1.768899986 -0.187462 198 26 SH11682 11682 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5296 5311 4320.983963 5872.761816 5096.87289 3.707303803 -0.18747 78 21 SH7389 7389 snR68 3' 39.943793 138.554458 89.2491255 1.950603969 -0.187492 142 47 SH11158 11158 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S/ITS1 2676 2693 3326.377276 4669.873035 3998.125156 3.601856385 -0.187589 21 29 SH18929 18929 YOL121C_15_92849_92025_INTRON_21_410 intron 24.32757 131.153162 24.32757 107.825592 66.076581 1.820047563 -0.18777 65 83 SH13896 13896 MT COB intronic 22.168021 112.757393 22.168021 91.589372 56.8786965 1.754949635 -0.187802 91 71 SH2157 2157 Met2 5' flank 23.164674 99.935865 61.5502695 1.789229959 -0.187877 103 43 SH831 831 Glu2 5' flank 24.162389 106.913209 65.537799 1.816491852 -0.187914 133 41 SH19193 19193 YPL081W_16_404945_406039_INTRON_8_508 5' exon 25.409107 137.609206 25.409107 113.200099 69.304603 1.84076208 -0.188008 5 72 SH20777 20777 YKL006C-A spliced 29.02498 120.696683 74.8608315 1.874254647 -0.188025 79 32 SH4063 4063 SRP RNA SRP RNA 206 225 29.866434 122.067152 75.966793 1.880623793 -0.188027 120 94 SH21708 21708 copy of SH11083 19591.22332 22167.32933 20879.27632 4.319715442 -0.188041 181 89 SH20714 20714 YJL041W spliced 24.365859 108.064464 66.2151615 1.820957443 -0.188057 34 100 SH17834 17834 YKR094C_11_618384_617630_INTRON_9_376 intron 37.667016 171.504063 37.667016 134.837047 86.2520315 1.935769333 -0.188066 63 29 SH16080 16080 YDR025W_4_491510_492319_INTRON_46_384 intron 30.092701 151.533659 30.092701 122.440958 76.2668295 1.882335693 -0.188184 110 81 SH17351 17351 YIL018W_9_316766_317930_INTRON_5_404 intron 19.953946 93.710387 19.953946 74.756441 47.3551935 1.675367616 -0.188206 186 17 SH1454 1454 Leu2 tRNA-intron 41 57 27.811395 118.69151 73.2514525 1.864816241 -0.188274 69 81 SH5805 5805 snR35 snR35 211 228 64.975322 179.358223 122.1667725 2.0869531 -0.188295 164 71 SH13915 13915 MT COB Cytbi3 22.226959 113.360462 22.226959 92.133503 57.180231 1.757245906 -0.188341 161 74 SH3302 3302 Thr2 3' flank 24.497642 108.831838 66.66474 1.82389619 -0.188386 103 18 SH20264 20264 YDR424C spliced 57.16159 166.620194 111.890892 2.048794736 -0.188449 72 73 SH10 10 Ala1 5' flank 23.983152 105.957564 64.970358 1.81271526 -0.188465 185 26 SH13062 13062 MT COX1 intronic 25.923464 139.364894 25.923464 114.44143 70.182447 1.846228506 -0.188484 106 57 SH16110 16110 YDR064W_4_579453_580447_INTRON_22_560 intron 23.525764 125.602416 23.525764 103.076652 63.301208 1.801411998 -0.188486 142 49 SH14978 14978 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 22.239178 113.489058 22.239178 92.24988 57.244529 1.757733986 -0.188487 7 92 SH2521 2521 Pro1 3' flank 28.578274 119.987589 74.2829315 1.870889034 -0.188511 165 95 SH4778 4778 snR5 snR5 61 78 27.636419 118.405233 73.020826 1.863446741 -0.188551 200 83 SH7515 7515 snR79 5' 26.299806 115.326108 70.812957 1.85011273 -0.188557 199 73 SH9788 9788 RUF4 RUF4 716 738 33.964475 128.697507 81.330991 1.910256064 -0.188568 94 48 SH13702 13702 MT tRNAGlu (and 5' processing site for COB) 5' 22.029884 111.554135 22.029884 90.524251 56.2770675 1.750331459 -0.188682 20 16 SH15978 15978 YDL136W_4_217600_218367_INTRON_4_408 intron 29.418549 149.804085 29.418549 121.385536 75.4020425 1.87738311 -0.188791 29 28 SH12977 12977 MT COX1 COX1ai2 39.001696 175.111004 39.001696 137.109308 88.055502 1.944756497 -0.188857 21 94 SH3245 3245 Thr1 3' flank 24.17241 107.05048 65.611445 1.816979603 -0.188882 108 67 SH4710 4710 snR4 snR4 86 104 23.500927 102.907541 63.204234 1.800746172 -0.188904 14 35 SH17788 17788 YKL186C_11_93537_92746_INTRON_71_233 5' exon 29.129661 149.052091 29.129661 120.92243 75.0260455 1.875212056 -0.188948 109 71 SH8437 8437 snoRNA cluster 5 intergenic/snR128 22.145532 112.669821 22.145532 91.524289 56.8349105 1.75461518 -0.189081 80 10 SH9622 9622 RUF3 3' 21.706416 87.901441 54.8039285 1.738811691 -0.18912 154 21 SH10777 10777 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 771 789 22.290541 92.742874 57.5167075 1.759794017 -0.189131 50 26 SH10631 10631 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 41 60 22.833147 97.276791 60.054969 1.778548947 -0.189133 102 72 SH19632 19632 RNA14 2.2 25.223327 112.827149 69.025238 1.839007913 -0.189141 120 38 SH18527 18527 YMR225C_13_721402_720959_INTRON_59_205 intron 25.009457 135.790544 25.009457 111.781087 68.395272 1.835026081 -0.189157 176 99 SH3058 3058 Ser3 5' flank - tRNA3 3 24.209195 107.282144 65.7456695 1.817867152 -0.189187 98 9 SH19068 19068 YOR293W_15_867094_867848_INTRON_53_489 intron 35.025621 164.565085 35.025621 130.539464 82.7825425 1.917938761 -0.189188 117 11 SH7369 7369 snR68 snR68 66 90 21.026 82.62331 51.824655 1.71453642 -0.189236 184 36 SH21043 21043 YMR133W spliced 26.276429 115.313607 70.795018 1.850002697 -0.189244 212 27 SH16139 16139 YDR092W_4_629869_630598_INTRON_31_298 intron 38.904 174.88045 38.904 136.97645 87.940225 1.944187572 -0.18926 17 104 SH4462 4462 telomerase RNA 3' 30.270682 122.792179 76.5314305 1.883839831 -0.18929 14 54 SH20341 20341 YER093C-A spliced 24.875763 111.039214 67.9574885 1.83223732 -0.189304 36 68 SH10722 10722 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 496 516 24.526946 109.078836 66.802891 1.824795258 -0.18935 197 88 SH15848 15848 YDL075W_4_322225_322987_INTRON_58_478 intron 24.328757 131.2995 24.328757 107.970743 66.14975 1.820528207 -0.189406 189 82 SH7833 7833 snoRNA cluster1 snR74 123.698966 398.983965 123.698966 276.284999 199.9919825 2.301012586 -0.18955 186 97 SH8880 8880 LSR1 / U2 RNA U2 1041 1057 28.444064 119.825051 74.1345575 1.8700207 -0.189554 145 20 SH12314 12314 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 31.176663 154.46404 31.176663 124.287377 77.73202 1.890599954 -0.189594 161 81 SH20097 20097 YDL029W spliced 22.768423 96.783101 59.775762 1.776525121 -0.189597 75 16 SH13040 13040 MT COX1 COX1ai2 21.545117 107.184165 21.545117 86.639048 54.0920825 1.733133702 -0.189684 193 4 SH3356 3356 Thr3 3' flank 28.855704 120.518985 74.6873445 1.873247018 -0.189757 204 65 SH15625 15625 YBR181C_2_592732_591670_INTRON_7_358 intron 23.740174 127.451602 23.740174 104.711428 64.225801 1.807709529 -0.18979 117 86 SH16935 16935 YGR027C_7_534779_534126_INTRON_1_312 intron 22.443297 115.548046 22.443297 94.104749 58.274023 1.765475001 -0.189887 133 64 SH10297 10297 RUF7 RUF7 96 117 25.100629 112.364632 68.7326305 1.837162965 -0.189931 88 82 SH6804 6804 snR52 5' 25.965842 114.628994 70.297418 1.846939374 -0.189933 173 102 SH8427 8427 snoRNA cluster 5 intergenic 23.907559 128.572609 23.907559 105.66505 64.7863045 1.811483208 -0.190027 133 28 SH18777 18777 YNL265C_14_145280_144279_INTRON_28_132 intron 23.986684 129.095193 23.986684 106.108509 65.0475965 1.813231254 -0.190042 158 48 SH16801 16801 YGL137W_7_249872_252741_INTRON_19_218 intron 24.57265 132.971611 24.57265 109.398961 66.9858055 1.825982784 -0.190086 199 104 SH12160 12160 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7686 7705 33.282802 127.712867 80.4978345 1.905784197 -0.190098 159 49 SH14892 14892 MT tRNA Ile 5' 22.377054 114.942714 22.377054 93.56566 57.971357 1.763213467 -0.190099 102 34 SH21516 21516 copy of SH3111 21.609488 87.200568 54.405028 1.735639038 -0.190103 100 10 SH17728 17728 YKL156W_11_158616_159214_INTRON_4_353 intron 24.685374 133.72081 24.685374 110.035436 67.360405 1.82840469 -0.190107 83 62 SH11358 11358 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3676 3689 3658.00213 5083.794907 4370.898519 3.640570723 -0.190116 15 76 SH20399 20399 YFR024C-A spliced 24.88273 111.149701 68.0162155 1.832612464 -0.190121 126 18 SH5847 5847 snR35 snR35 421 440 24.997708 111.799611 68.3986595 1.83504759 -0.190125 170 72 SH18942 18942 YOL127W_15_80347_81189_INTRON_14_427 5' exon 60.575138 231.898067 60.575138 172.322929 116.4490335 2.066135888 -0.190186 40 43 SH1766 1766 Leu7 3' flank 26.64127 116.221148 71.431209 1.853888001 -0.190203 35 3 SH18656 18656 YNL112W_14_413636_416278_INTRON_1274_2275 intron 22.518144 116.292122 22.518144 94.773978 58.646061 1.768238848 -0.190269 149 9 SH3623 3623 Val1 3' flank 23.99934 106.20124 65.10029 1.813582923 -0.190306 82 73 SH10874 10874 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1256 1273 2200.388612 3255.731132 2728.059872 3.435853897 -0.190342 72 57 SH17885 17885 YLR048W_12_242233_243350_INTRON_91_449 intron 56.414841 220.983597 56.414841 165.568756 110.9917985 2.045290889 -0.190349 207 101 SH8287 8287 snoRNA cluster4 intergenic 23.956429 128.925772 23.956429 105.969343 64.962886 1.81266531 -0.190402 10 69 SH17342 17342 YIL018W_9_316766_317930_INTRON_5_404 intron 22.628925 117.337593 22.628925 95.708668 59.1687965 1.772092736 -0.190458 124 67 SH18732 18732 YNL147W_14_350937_351380_INTRON_19_138 3' exon 26.47817 141.33622 26.47817 115.85805 71.16811 1.852285432 -0.190458 209 33 SH4362 4362 telomerase RNA telomerase 846 860 28.177302 119.433819 73.8055605 1.868089083 -0.190489 148 15 SH20653 20653 YIL004C spliced 13256.77871 15747.68052 14502.22961 4.161434777 -0.190586 13 94 SH17435 17435 YIL133C_9_99416_98527_INTRON_32_321 intron 30.70056 153.26617 30.70056 123.56561 77.133085 1.887240702 -0.190653 6 15 SH6284 6284 snR42 snR42 201 220 25.242937 112.969718 69.1063275 1.839517814 -0.190741 214 55 SH3766 3766 Val4 tRNA 56 70 23.854229 105.438023 64.646126 1.810542504 -0.190883 67 9 SH15234 15234 MT COX3 3' 21.777997 109.430385 21.777997 88.652388 55.2151925 1.742058591 -0.190899 81 97 SH12168 12168 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7726 7743 23.701227 104.593345 64.147286 1.807178287 -0.190997 127 68 SH15599 15599 YBR089C-A_2_426588_426148_INTRON_1_114 intron 23.264417 123.369937 23.264417 101.10552 62.1849685 1.793685419 -0.19101 187 43 SH4862 4862 snR8 snR8 91 105 26.121718 115.063959 70.5928385 1.848760645 -0.191074 42 85 SH2004 2004 Lys3 5' flank 24.06604 106.647473 65.3567565 1.815290491 -0.191179 110 6 SH429 429 Asp1 5' flank 22.079413 91.18114 56.6302765 1.753048682 -0.19126 155 43 SH20931 20931 YLR388W spliced 31.377004 124.718889 78.0479465 1.892361481 -0.191282 8 19 SH3898 3898 RNase MRP 5' 27.892502 119.001536 73.447019 1.865974174 -0.19129 24 76 SH740 740 Gln4 5' flank 22.783518 97.078308 59.930913 1.777650894 -0.191299 36 14 SH14061 14061 MT COB Cytbi4 22.086328 112.329508 22.086328 91.24318 56.664754 1.753313008 -0.191306 211 83 SH9451 9451 RUF2 RUF2 96 110 24.262511 107.762307 66.012409 1.819625582 -0.191335 159 104 SH10595 10595 RUF8 RUF8 901 913 28.222209 119.567779 73.894994 1.868615018 -0.191506 190 63 SH13461 13461 MT COX1 intronic 22.679704 117.915781 22.679704 96.236077 59.4578905 1.774209497 -0.191532 210 16 SH10634 10634 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 56 71 26.029775 114.895124 70.4624495 1.847957737 -0.191839 181 54 SH3612 3612 Val1 tRNA 56 68 39.313599 137.832235 88.572917 1.947300948 -0.191859 2 23 SH18333 18333 YML094W_13_82275_82849_INTRON_17_99 3' exon 26.033176 139.938128 26.033176 114.904952 70.469064 1.847998503 -0.19187 12 74 SH18664 18664 YNL112W_14_413636_416278_INTRON_1274_2275 intron 23.125608 122.148261 23.125608 100.022653 61.5741305 1.789398288 -0.191948 203 49 SH17506 17506 YJL136C_10_156971_156248_INTRON_25_484 intron 4771.362573 11195.20748 4771.362573 6424.84491 5598.103742 3.748040942 -0.191964 130 79 SH20863 20863 YLR093C spliced 24.896529 111.394087 68.145308 1.833435959 -0.192027 185 96 SH1440 1440 Leu2 5' flank 25.515585 113.699532 69.6075585 1.842656401 -0.192114 205 21 SH13446 13446 MT COX1 intronic 24.535352 132.899317 24.535352 109.363965 66.9496585 1.825748366 -0.192125 118 31 SH6753 6753 snR50 5' 24.477342 109.037654 66.757498 1.824500051 -0.19213 112 65 SH17080 17080 YGR225W_7_945138_946919_INTRON_1184_1276 3' exon 35.286959 165.460982 35.286959 131.174023 83.230491 1.920282457 -0.192151 99 12 SH18710 18710 YNL130C_14_381156_379555_INTRON_30_470 intron 22.415196 115.519859 22.415196 94.104663 58.2599295 1.765369955 -0.192304 44 49 SH19789 19789 Negative Control 24.626403 109.894364 67.2603835 1.827759339 -0.192325 127 62 SH15536 15536 YBR078W_2_393082_394818_INTRON_59_388 intron 20.270393 96.582114 20.270393 77.311721 48.791057 1.688340227 -0.192413 133 22 SH6450 6450 snR45 snR45 96 108 24.092644 106.901593 65.4971185 1.816222194 -0.192433 13 95 SH5299 5299 snR30 snR30 346 363 34.519154 129.895584 82.207369 1.914910749 -0.192439 128 61 SH17382 17382 YIL052C_9_257061_256224_INTRON_38_509 3' exon 24.251421 131.049221 24.251421 107.7978 66.0246105 1.819705848 -0.192492 27 27 SH862 862 Glu2 3' flank 22.277019 92.967078 57.6220485 1.760588694 -0.192609 40 69 SH20510 20510 YGR029W spliced 36.055322 132.491216 84.273269 1.925689841 -0.192667 88 15 SH12236 12236 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 23.693646 127.400433 23.693646 104.706787 64.2002165 1.807536493 -0.192894 91 38 SH17611 17611 YJR021C_10_469271_468247_INTRON_317_396 5' exon 24.116988 130.196408 24.116988 107.07942 65.598204 1.816891949 -0.192924 181 21 SH6216 6216 snR40 3' 25.154655 112.892762 69.0237085 1.838998289 -0.192966 25 40 SH16691 16691 YGL030W_7_439087_439634_INTRON_4_233 3' exon 27.520161 144.937899 27.520161 118.417738 72.9689495 1.863138094 -0.192971 29 94 SH15397 15397 YBL050W_2_125087_126081_INTRON_31_146 exon/intron 41.533417 182.066061 41.533417 141.532644 91.5330305 1.961577841 -0.19299 132 76 SH16660 16660 YFR032C-A_6_223758_223245_INTRON_1_331 intron 24.882885 135.285167 24.882885 111.402282 68.1425835 1.833418595 -0.193004 211 9 SH7816 7816 snoRNA cluster1 intergenic 25.762956 139.10605 25.762956 114.343094 70.053025 1.845426894 -0.193085 37 83 SH14205 14205 MT COB 3' 23.195129 122.932976 23.195129 100.737847 61.966488 1.792156883 -0.193158 75 68 SH20634 20634 YHR141C spliced 31.447862 124.95227 78.200066 1.89320712 -0.193202 35 79 SH10090 10090 RUF6 RUF6 296 313 23.526359 103.584278 63.5553185 1.803151899 -0.193226 214 88 SH9579 9579 RUF3 RUF3 281 296 32.63521 126.878233 79.7567215 1.901767293 -0.193248 60 79 SH1932 1932 Lys1 3' flank 20.152476 76.537357 48.3449165 1.684350814 -0.193261 155 54 SH17439 17439 YIL133C_9_99416_98527_INTRON_32_321 intron 22.621053 117.545868 22.621053 95.924815 59.272934 1.772856425 -0.193322 93 71 SH4 4 Ala1 5' flank 23.158673 100.448253 61.803463 1.79101281 -0.193357 38 98 SH15593 15593 YBR089C-A_2_426588_426148_INTRON_1_114 5' exon 28.751838 148.310914 28.751838 120.559076 74.655457 1.873061558 -0.193391 88 87 SH19669 19669 SIR1 2.4 22.156535 92.0317 57.0941175 1.756591364 -0.193407 79 102 SH21640 21640 copy of SH8350 25.274035 113.203824 69.2389295 1.840350345 -0.193408 3 101 SH1911 1911 Lys1 tRNA 11 23 41.488873 141.489902 91.4893875 1.96137072 -0.193424 39 54 SH11939 11939 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6581 6596 123.733863 276.996645 200.365254 2.301822411 -0.193513 39 85 SH20608 20608 YHR077C spliced 63.16844 176.930306 120.049373 2.079359896 -0.19354 201 72 SH4957 4957 snR9 3' 23.221193 101.004378 62.1127855 1.793181006 -0.193588 44 57 SH16458 16458 YER074W-A_0_5_307649_INTRON_95_196 3' exon 48.533518 200.581239 48.533518 153.047721 100.7906195 2.003420115 -0.19368 7 2 SH15012 15012 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.634211 138.710038 25.634211 114.075827 69.855019 1.844197615 -0.193693 8 80 SH3127 3127 Ser4 tRNA 41 58 28.245176 119.734012 73.989594 1.869170644 -0.193715 82 83 SH14285 14285 MT VAR1 includes 5’ processing site VAR1 22.159108 113.250273 22.159108 92.091165 57.1251365 1.756827251 -0.193801 90 57 SH12234 12234 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.183092 140.558043 26.183092 115.374951 70.7790215 1.849904554 -0.193809 184 30 SH10142 10142 RUF6 RUF6 556 573 377.470338 685.860255 531.6652965 2.725638313 -0.193813 40 37 SH20058 20058 YBR255C-A spliced 25.095709 112.685615 68.890662 1.838160358 -0.193883 140 48 SH2166 2166 Met2 5' flank 22.195341 92.407807 57.301574 1.758166552 -0.193929 87 75 SH9 9 Ala1 5' flank 22.592644 95.748722 59.170683 1.772106582 -0.193932 113 76 SH13892 13892 MT COB intronic 21.308091 105.471302 21.308091 85.163211 53.235651 1.726202569 -0.194001 171 55 SH21580 21580 copy of SH5869 30.72745 123.813636 77.270543 1.888013964 -0.194013 165 15 SH15705 15705 YBR220C_2_663261_662457_INTRON_302_722 intron 22.055161 112.298661 22.055161 91.2435 56.6493305 1.753194782 -0.194034 175 43 SH14125 14125 MT COB intron/exon5 25.016387 136.271539 25.016387 112.255152 68.6357695 1.836550507 -0.194104 123 103 SH17623 17623 YJR094W-A_10_608000_608553_INTRON_3_277 intron 58.603679 227.080829 58.603679 169.47715 114.0404145 2.057058787 -0.194114 174 35 SH255 255 Arg3 3' flank 216.170757 426.58069 321.3757235 2.507013067 -0.194125 30 57 SH16347 16347 YDR500C_4_1450856_1450201_INTRON_8_396 intron 28.879539 148.698177 28.879539 120.818638 74.8490885 1.874186516 -0.194219 149 92 SH895 895 Glu3 5' flank - tRNA5 5 25.066565 112.559528 68.8130465 1.837670785 -0.194328 34 79 SH21279 21279 YPL129W spliced 24.667028 110.299475 67.4832515 1.829196 -0.194359 118 6 SH18453 18453 YMR143W_13_551927_552902_INTRON_25_568 intron 23.075081 121.920443 23.075081 99.845362 61.4602215 1.788594121 -0.194398 74 58 SH16020 16020 YDL189W_4_122079_123590_INTRON_1_99 intron 25.277185 137.551578 25.277185 113.274393 69.275789 1.840581481 -0.194457 181 96 SH15205 15205 MT COX3 cox3 28.769875 148.421042 28.769875 120.651167 74.710521 1.873381765 -0.194458 109 41 SH3112 3112 Ser4 5' flank 21.622214 87.703902 54.663058 1.737693924 -0.194469 90 27 SH4936 4936 snR9 snR9 86 105 43.429793 144.778507 94.10415 1.973608776 -0.194495 195 104 SH14651 14651 MT 21S rRNA 21S rRNA4 60.462769 232.010578 60.462769 172.547809 116.505289 2.066345642 -0.194538 20 99 SH15373 15373 YBL027W_2_168385_169338_INTRON_3_386 intron 24.190424 130.827667 24.190424 107.637243 65.9138335 1.818976571 -0.194649 129 40 SH20310 20310 YER007C-A spliced 23.103173 100.113586 61.6083795 1.789639786 -0.194688 151 16 SH21788 21788 copy of SH14443 22.42877 94.455308 58.442039 1.76672536 -0.19469 134 54 SH14253 14253 MT VAR1 includes 5’ processing site 5' and processing site for var1 21.935734 111.247014 21.935734 90.31128 56.123507 1.749144801 -0.194695 189 52 SH2883 2883 Pro8 5' flank 27.871577 119.164232 73.5179045 1.86639312 -0.194729 112 39 SH3939 3939 RNase MRP RNaseMRP 111 132 22.861125 98.073157 60.467141 1.781519435 -0.19474 162 94 SH10471 10471 RUF8 RUF8 281 298 26.325973 115.768991 71.047482 1.851548691 -0.194782 197 68 SH20138 20138 YDL108W spliced 27.108149 117.585769 72.346959 1.859420281 -0.194796 112 22 SH18604 18604 YNL069C_14_494998_493953_INTRON_29_477 intron 22.876407 120.088375 22.876407 98.211968 60.5441875 1.782072455 -0.194842 137 9 SH10451 10451 RUF8 RUF8 181 199 30.085807 122.825687 76.455747 1.883410136 -0.19486 61 61 SH149 149 Arg1 3' flank 23.884537 105.937508 64.9110225 1.81231845 -0.194861 18 17 SH9275 9275 RUF1 5' 23.175771 100.757048 61.9664095 1.792156333 -0.194939 197 5 SH2637 2637 Pro3 3' flank 24.204512 107.744542 65.974527 1.819376285 -0.194981 203 42 SH17296 17296 YHR141C_8_382752_381991_INTRON_5_445 intron 26.849333 142.848653 26.849333 116.99932 71.9243265 1.856875804 -0.194984 73 10 SH13939 13939 MT COB Cytbi3 23.094731 122.168441 23.094731 100.07371 61.5842205 1.789469449 -0.194998 81 15 SH20907 20907 YLR316C spliced 23.945552 106.295277 65.1204145 1.813717156 -0.195048 109 75 SH11834 11834 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6056 6069 9187.932785 11442.38263 10315.15771 4.013475872 -0.195051 168 9 SH8996 8996 snR17a / U3a U3a 266 282 159.89977 335.949545 247.9246575 2.394319722 -0.195147 78 102 SH6549 6549 snR46 3' 21.736833 88.709546 55.2231895 1.742121486 -0.195165 77 94 SH12846 12846 MT COX1 COX1ai1 26.205486 140.716931 26.205486 115.511445 70.8584655 1.850391743 -0.19518 22 17 SH18890 18890 YOL120C_15_94401_93394_INTRON_113_559 5' exon 22.620841 117.727106 22.620841 96.106265 59.363553 1.773519886 -0.195181 90 38 SH6815 6815 snR52 5' 42.39218 143.133437 92.7628085 1.967373889 -0.195332 182 11 SH17385 17385 YIL069C_9_232366_231550_INTRON_4_412 exon/intron 25.776531 139.288535 25.776531 114.512004 70.1442675 1.845992184 -0.195338 42 59 SH4056 4056 SRP RNA SRP RNA 171 190 23.267087 101.58125 62.4241685 1.795352766 -0.195366 156 30 SH3948 3948 RNase MRP RNaseMRP 156 170 33.585311 128.523303 81.054307 1.908776097 -0.195404 208 95 SH14592 14592 MT 21S rRNA Sce1 endonuc 27.293074 144.344313 27.293074 118.051239 72.6721565 1.861368048 -0.19543 130 80 SH3336 3336 Thr3 tRNA 26 43 25.032241 112.464362 68.7483015 1.837261973 -0.195457 90 43 SH19949 19949 YBL050W spliced 93.886079 228.250982 161.0685305 2.207010696 -0.195461 56 69 SH10961 10961 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1691 1709 29928.47682 32342.60812 31135.54247 4.493256437 -0.195568 173 14 SH5579 5579 snR33 181-183 + 3' 181 22.342002 93.805333 58.0736675 1.763979254 -0.195569 86 58 SH12150 12150 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7636 7653 1354.820113 2125.91418 1740.367147 3.240640876 -0.195599 25 15 SH4315 4315 telomerase RNA telomerase 611 627 24.454758 109.219311 66.8370345 1.825017172 -0.195738 199 47 SH18380 18380 YMR116C_13_500687_499455_INTRON_538_810 intron 73.691963 267.290237 73.691963 194.598274 134.1451185 2.127574873 -0.19576 167 92 SH6081 6081 snR37 snR37 321 337 55.458911 164.473781 109.966346 2.041259794 -0.195763 190 80 SH8225 8225 snoRNA cluster 3; snR51/3' 23.954741 129.365779 23.954741 106.411038 65.1828895 1.814133608 -0.195817 116 25 SH14559 14559 MT 21S rRNA 21S rRNA3 22.539651 117.03399 22.539651 95.494339 59.016995 1.770977093 -0.195825 113 60 SH14263 14263 MT VAR1 includes 5’ processing site 5' / var1 30.062952 151.911663 30.062952 122.848711 76.4558315 1.883410616 -0.195869 208 83 SH12088 12088 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7326 7343 84.16449 212.030496 148.097493 2.170547707 -0.195881 46 48 SH15565 15565 YBR084C-A_2_415219_414144_INTRON_3_508 intron 24.735385 134.564989 24.735385 110.829604 67.7824945 1.831117548 -0.196012 183 81 SH5002 5002 snR10 snR10 41 55 23.990437 106.628253 65.309345 1.814975328 -0.196018 158 50 SH12950 12950 MT COX1 COX1ai2 37.811684 172.44452 37.811684 135.632836 86.72226 1.938130587 -0.196101 114 20 SH4453 4453 telomerase RNA 1301 + 3' 1301 30.482202 123.538378 77.01029 1.886548759 -0.196131 114 30 SH9645 9645 RUF4 RUF4 1 15 22.689157 96.775636 59.7323965 1.776209939 -0.196185 56 98 SH15281 15281 MT 9S rRNA 9S 27.793804 145.916118 27.793804 119.122314 73.458059 1.866039449 -0.196284 111 80 SH21856 21856 copy of SH17801 23.510333 103.772109 63.641221 1.803738503 -0.196294 193 91 SH666 666 Gln2 3' flank 24.22102 107.949032 66.085026 1.820103065 -0.196299 197 13 SH5806 5806 snR35 snR35 216 233 30.67205 123.862031 77.2670405 1.887994278 -0.196331 122 50 SH3848 3848 RNaseP RNaseP 206 222 25.484143 113.880668 69.6824055 1.843123134 -0.196348 139 6 SH5387 5387 snR31 snR31 1 18 39.428051 138.336894 88.8824725 1.948816127 -0.196365 70 96 SH636 636 Gln2 5' flank 22.211328 92.782384 57.496856 1.759644098 -0.196407 96 32 SH19923 19923 YAL030W spliced 28.406754 120.16661 74.286682 1.870910961 -0.196513 84 43 SH2522 2522 Pro1 3' flank 27.555786 118.738417 73.1471015 1.864197122 -0.196771 144 34 SH17290 17290 YHR141C_8_382752_381991_INTRON_5_445 intron 23.325561 124.55695 23.325561 102.231389 62.778475 1.797810762 -0.196789 55 47 SH13120 13120 MT COX1 COX1ai3 23.924603 129.250983 23.924603 106.32638 65.1254915 1.813751014 -0.196831 36 37 SH13820 13820 MT COB Cytbi2 24.83782 135.322387 24.83782 111.484567 68.1611935 1.833537186 -0.196865 98 61 SH4931 4931 snR9 snR9 61 77 231.622953 452.322205 341.972579 2.533991284 -0.196879 82 35 SH8307 8307 snoRNA cluster4 intergenic 21.939323 111.490463 21.939323 90.55114 56.2452315 1.750085709 -0.196914 150 52 SH6899 6899 snR56 3' 24.660918 110.486441 67.5736795 1.829777568 -0.196917 175 83 SH4312 4312 telomerase RNA telomerase 596 615 23.976231 106.62693 65.3015805 1.814923693 -0.196956 49 37 SH11556 11556 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4666 4679 10137.28307 12490.8073 11314.04518 4.053617909 -0.19699 166 37 SH15413 15413 YBL059C-A_2_110500_110086_INTRON_35_119 3' exon 24.520623 133.248659 24.520623 109.728036 67.1243295 1.826879961 -0.197328 132 14 SH308 308 Arg4 3' flank 26.035438 115.243775 70.6396065 1.849048271 -0.19733 146 69 SH2847 2847 Pro7 tRNA-intron 41 57 24.629363 110.348332 67.4888475 1.829232012 -0.197385 6 96 SH9752 9752 RUF4 RUF4 536 548 30.062698 122.939207 76.5009525 1.883666843 -0.197398 16 66 SH872 872 Glu2 3' flank 24.65786 110.511237 67.5845485 1.829847417 -0.197403 119 32 SH20516 20516 YGR029W spliced 26.388935 116.077822 71.2333785 1.852683543 -0.197409 90 81 SH9307 9307 RUF1 RUF1 111 129 22.452162 94.923519 58.6878405 1.768548129 -0.197412 174 83 SH20609 20609 YHR079C-A spliced 28.106411 119.715184 73.9107975 1.868707888 -0.197414 106 93 SH638 638 Gln2 5' flank 23.005923 99.571274 61.2885985 1.78737969 -0.197454 197 86 SH10069 10069 RUF6 RUF6 191 208 109.919447 255.09579 182.5076185 2.261280998 -0.197463 171 30 SH20108 20108 YDL064W spliced 43.738695 145.506854 94.6227745 1.975995678 -0.19748 64 5 SH19050 19050 YOR234C_15_779404_778554_INTRON_20_546 intron 24.601718 133.807458 24.601718 110.20574 67.403729 1.828683924 -0.197546 12 56 SH18181 18181 YLR448W_12_1028848_1029762_INTRON_16_399 intron 22.812358 119.757543 22.812358 97.945185 60.3787715 1.780884272 -0.197548 204 54 SH20541 20541 YGR214W spliced 24.20132 107.944344 66.072832 1.820022922 -0.197554 24 41 SH18273 18273 YML056C_13_164176_162194_INTRON_461_868 intron 23.358739 124.961291 23.358739 102.602552 62.9806455 1.799207107 -0.197606 34 64 SH15834 15834 YDL075W_4_322225_322987_INTRON_58_478 intron 25.371771 138.061508 25.371771 113.689737 69.530754 1.842176939 -0.197612 150 71 SH11251 11251 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3141 3159 2193.88509 3262.703103 2728.294097 3.435891183 -0.197622 56 93 SH19273 19273 YPL143W_16_282121_282969_INTRON_20_544 intron 26.7747 142.769378 26.7747 116.994678 71.884689 1.856636398 -0.197697 7 58 SH8836 8836 LSR1 / U2 RNA U2 821 837 22.804173 97.906748 60.3554605 1.780716568 -0.197851 198 22 SH3432 3432 Trp1 5' flank - tRNA7 7 30.223193 123.227373 76.725283 1.884938499 -0.19789 169 77 SH9008 9008 snR17a / U3a U3a 326 350 22.363627 94.232041 58.297834 1.765652419 -0.198041 66 26 SH4055 4055 SRP RNA SRP RNA 166 184 22.171546 92.607513 57.3895295 1.758832664 -0.198062 68 86 SH17151 17151 YHR012W_8_129473_130440_INTRON_49_167 intron 24.338478 132.11505 24.338478 108.776572 66.557525 1.823197164 -0.198239 108 101 SH19066 19066 YOR293W_15_867094_867848_INTRON_53_489 intron 41.598654 182.630595 41.598654 142.031941 91.8152975 1.962915046 -0.198317 94 77 SH18392 18392 YMR116C_13_500687_499455_INTRON_538_810 3' exon 23.816989 128.66546 23.816989 105.848471 64.83273 1.811794309 -0.198351 125 46 SH3076 3076 Ser3 tRNA 76 90 2044.015594 3067.509927 2555.762761 3.407520538 -0.198476 156 19 SH12920 12920 MT COX1 COX1ai2 22.150157 113.617582 22.150157 92.467425 57.308791 1.758221247 -0.198478 159 43 SH435 435 Asp1 5' flank - tRNA16 5' flank 16 22.583961 96.131319 59.35764 1.773476626 -0.198553 105 9 SH16541 16541 YER131W_5_423587_424307_INTRON_1_361 3' exon 466.171902 1291.859883 466.171902 826.687981 646.4299415 2.810521464 -0.198648 151 30 SH11321 11321 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3491 3508 38627.81888 40565.37308 39596.59598 4.597657852 -0.198684 8 7 SH9660 9660 RUF4 RUF4 76 94 22.661063 96.804613 59.732838 1.776213149 -0.198844 199 28 SH20297 20297 YEL012W spliced 26.358137 116.097564 71.2278505 1.852649838 -0.198899 85 14 SH16552 16552 YER133W_5_432491_433954_INTRON_178_702 intron 23.811768 128.686692 23.811768 105.874924 64.843346 1.811865417 -0.199023 88 26 SH1149 1149 His1 5' flank 22.366947 94.359732 58.3633395 1.766140134 -0.199049 96 20 SH14309 14309 MT VAR1 includes 5’ processing site VAR1 22.005515 112.321529 22.005515 91.316014 56.6607645 1.75328243 -0.199142 140 73 SH9793 9793 RUF4 RUF4 741 759 24.252491 108.373389 66.31294 1.821598283 -0.199208 40 11 SH16173 16173 YDR305C_4_1073479_1072737_INTRON_88_176 5' exon 22.369197 115.776722 22.369197 94.407525 58.388361 1.766326284 -0.199339 145 66 SH12927 12927 MT COX1 COX1ai2 24.649598 134.291864 24.649598 110.642266 67.645932 1.830241685 -0.199453 180 26 SH3069 3069 Ser3 tRNA 41 59 25.263268 113.546076 69.404672 1.841388706 -0.199522 11 78 SH20611 20611 YHR079C-A spliced 52.348177 159.755459 106.051818 2.025518118 -0.199594 25 67 SH13296 13296 MT COX1 COX1-ai5a 22.665642 118.58397 22.665642 96.918328 59.791985 1.776642972 -0.199603 64 51 SH9792 9792 RUF4 RUF4 736 755 26.983719 117.601507 72.292613 1.859093923 -0.199655 57 82 SH8577 8577 snR19 / U1 RNA U1 381 398 24.322335 108.809915 66.566125 1.823253276 -0.199699 4 70 SH1847 1847 Leu9 5' flank 22.287942 93.753544 58.020743 1.763583286 -0.199716 15 41 SH10760 10760 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 686 699 31.693027 125.754977 78.724002 1.896107164 -0.199747 69 14 SH17747 17747 YKL157W_11_154993_158183_INTRON_282_664 intron 31.104022 154.895524 31.104022 124.791502 77.947762 1.89180365 -0.199829 181 34 SH11937 11937 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6571 6587 188.173263 382.850041 285.511652 2.455623837 -0.199852 77 64 SH9233 9233 snR6 / U6 RNA U6 36 55 134.927749 296.270497 215.599123 2.33364699 -0.199893 169 48 SH4437 4437 telomerase RNA telomerase 1221 1238 22.446361 95.118262 58.7823115 1.76924666 -0.199904 4 16 SH3133 3133 Ser4 tRNA 71 83 25.337475 113.749693 69.543584 1.842257069 -0.19996 51 22 SH10816 10816 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 966 983 4080.937561 5631.353031 4856.145296 3.686291672 -0.199963 202 51 SH17115 17115 YHR010W_8_126513_127484_INTRON_32_592 5' exon 24.280469 131.882687 24.280469 108.602218 66.4413435 1.822438406 -0.200039 69 69 SH1072 1072 Gly3 3' flank 23.810179 105.961573 64.885876 1.812150172 -0.200173 13 58 SH15956 15956 YDL130W_4_229906_230527_INTRON_115_415 intron 23.592829 127.335431 23.592829 104.742602 64.1677155 1.807316578 -0.200199 141 26 SH17558 17558 YJL189W_10_75932_76473_INTRON_7_392 intron 25.495691 138.640472 25.495691 114.144781 69.820236 1.843981312 -0.200258 180 77 SH14555 14555 MT 21S rRNA 21S rRNA3 33.695784 161.710369 33.695784 129.014585 81.3551845 1.910385234 -0.200435 191 103 SH4535 4535 U3b (snR17b) U3b 231 243 31.190483 124.974362 78.0824225 1.892553279 -0.200484 192 5 SH12792 12792 MT COX1 COX1ai1 26.632248 142.470939 26.632248 116.838691 71.7354695 1.855733945 -0.200526 172 51 SH17622 17622 YJR094W-A_10_608000_608553_INTRON_3_277 exon/intron 24.649232 134.383219 24.649232 110.733987 67.6916095 1.83053484 -0.200533 169 100 SH20871 20871 YLR128W spliced 27.243587 118.262872 72.7532295 1.861852276 -0.200622 152 41 SH12676 12676 MT tRNA Trp 5' 25.199288 137.661579 25.199288 113.462291 69.3307895 1.840926146 -0.200671 12 103 SH8912 8912 LSR1 / U2 RNA 3' 31.133653 124.892801 78.013227 1.892168243 -0.200686 123 102 SH5578 5578 snR33 176-183 + 3' 176 24.591314 110.420707 67.5060105 1.829342443 -0.200711 37 9 SH17713 17713 YKL081W_11_282533_284097_INTRON_206_531 intron 74.965851 271.250272 74.965851 197.284421 136.125136 2.133938327 -0.200821 51 16 SH20240 20240 YDR305C spliced 23.733541 105.592014 64.6627775 1.810654355 -0.200914 139 104 SH4238 4238 telomerase RNA telomerase 226 243 22.274926 93.760724 58.017825 1.763561444 -0.200916 165 94 SH12822 12822 MT COX1 COX1ai1 23.738762 128.36924 23.738762 105.630478 64.68462 1.810801031 -0.201024 185 104 SH14792 14792 "MT tRNAs (Lys, Arg1, Gly)" 5' 33.462073 161.150831 33.462073 128.688758 81.0754155 1.908889183 -0.201129 114 28 SH17933 17933 YLR093C_12_327416_326514_INTRON_17_157 intron 22.712104 119.180285 22.712104 97.468181 60.0901425 1.778803234 -0.201204 191 72 SH9506 9506 RUF3 5' 174.634479 361.203245 267.918862 2.42800329 -0.201216 71 4 SH12312 12312 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 26.602904 142.421507 26.602904 116.818603 71.7107535 1.855584286 -0.201306 109 96 SH16757 16757 YGL087C_7_346902_346404_INTRON_12_96 5' exon 24.377227 132.643637 24.377227 109.26641 66.8218185 1.82491829 -0.201403 157 69 SH21807 21807 copy of SH15282 30.747946 124.297246 77.522596 1.889428308 -0.201417 6 59 SH19776 19776 Negative Control 22.69894 97.381032 60.039986 1.778440582 -0.20144 48 42 SH3558 3558 Tyr2 tRNA 61 73 37.261991 135.073996 86.1679935 1.93534598 -0.201466 133 73 SH15982 15982 YDL136W_4_217600_218367_INTRON_4_408 intron 22.752883 119.591001 22.752883 97.838118 60.2955005 1.780284904 -0.201469 135 33 SH19073 19073 YOR293W_15_867094_867848_INTRON_53_489 intron 23.953666 129.841693 23.953666 106.888027 65.4208465 1.815716159 -0.20159 52 34 SH4762 4762 snR5 5' 24.303562 108.874259 66.5889105 1.823401909 -0.201696 78 63 SH19739 19739 Negative Control 25.238904 113.620909 69.4299065 1.84154658 -0.20173 114 88 SH6715 6715 snR49 snR49 101 122 24.4199 109.544241 66.9820705 1.825958568 -0.201822 110 42 SH15985 15985 YDL136W_4_217600_218367_INTRON_4_408 intron 21.498585 107.863263 21.498585 87.364678 54.4316315 1.735851352 -0.201828 66 60 SH13443 13443 MT COX1 intronic 22.541673 117.643704 22.541673 96.102031 59.321852 1.773214701 -0.201837 175 46 SH18837 18837 YNL302C_14_62942_61957_INTRON_21_571 intron 22.784979 119.930973 22.784979 98.145994 60.4654865 1.781507552 -0.201839 73 16 SH7966 7966 snoRNA cluster 2 5' 21.333271 106.372861 21.333271 86.03959 53.6864305 1.72986453 -0.201911 44 55 SH368 368 Asn1 5' flank 29.26217 121.901988 75.582079 1.878418834 -0.201927 212 60 SH9644 9644 RUF4 5' - 8 -4 8 24.162298 108.094906 66.128602 1.820389342 -0.20193 157 57 SH1743 1743 Leu7 tRNA 11 25 13297.84634 15907.71247 14602.7794 4.164435525 -0.201933 167 6 SH5204 5204 snR13 3' 22.59275 96.539662 59.566206 1.774999939 -0.201941 15 42 SH15976 15976 YDL136W_4_217600_218367_INTRON_4_408 intron 23.225834 124.141731 23.225834 101.915897 62.5708655 1.796372162 -0.201963 133 47 SH16023 16023 YDL189W_4_122079_123590_INTRON_1_99 intron 25.666486 139.320808 25.666486 114.654322 70.160404 1.846092081 -0.201963 38 10 SH21102 21102 YNL050C spliced 22.379914 94.758994 58.569454 1.767671175 -0.201966 183 80 SH21847 21847 copy of SH17382 24.925813 112.43962 68.6827165 1.836847464 -0.20204 196 63 SH3464 3464 Trp1 3' flank 25.964865 115.368651 70.666758 1.849215168 -0.202088 203 35 SH11081 11081 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2291 2307 11365.26013 13857.58512 12611.42262 4.10076408 -0.202106 148 51 SH8380 8380 snoRNA cluster 5 5' 22.464669 116.951438 22.464669 95.486769 58.975719 1.770673244 -0.202115 139 24 SH11308 11308 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS2/25S 3426 3446 23.05395 100.460576 61.757263 1.79068804 -0.202136 202 25 SH13522 13522 MT COX1 intronic 26.843065 143.278869 26.843065 117.435804 72.1394345 1.858172734 -0.202233 165 90 SH4975 4975 snR10 5' 24.06376 107.565094 65.814427 1.818321105 -0.202251 60 100 SH17992 17992 YLR287C-A_12_713158_712537_INTRON_4_433 5' exon 31.127775 155.11024 31.127775 124.982465 78.05512 1.892401396 -0.202311 114 62 SH12271 12271 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.025704 130.383761 24.025704 107.358057 65.6918805 1.817511694 -0.202345 179 71 SH10551 10551 RUF8 RUF8 681 698 21.954732 91.19952 56.577126 1.752640882 -0.20238 151 103 SH5282 5282 snR30 snR30 261 276 27.058022 117.948125 72.5030735 1.860356417 -0.202446 90 13 SH283 283 Arg4 11-25 11 25 23.75837 105.860305 64.8093375 1.811637582 -0.202464 138 14 SH16265 16265 YDR424C_4_1319830_1319376_INTRON_26_121 3' exon 22.535486 117.648187 22.535486 96.112701 59.3240935 1.773231111 -0.20247 71 92 SH17831 17831 YKR094C_11_618384_617630_INTRON_9_376 intron 24.568537 134.01735 24.568537 110.448813 67.508675 1.829359584 -0.202528 103 63 SH14225 14225 MT ATP9 ATP9 27.733165 146.113148 27.733165 119.379983 73.556574 1.866621493 -0.202538 87 74 SH20450 20450 YGL137W spliced 24.54986 110.345323 67.4475915 1.828966446 -0.202559 67 92 SH10015 10015 RUF6 5' 24.070349 107.633159 65.851754 1.818567347 -0.202616 158 52 SH20424 20424 YGL031C spliced 189.512185 385.677808 287.5949965 2.458781326 -0.202648 149 79 SH1822 1822 Leu8 3' flank 23.251988 102.213573 62.7327805 1.797494537 -0.202655 18 84 SH15816 15816 YDL061C_4_341182_340627_INTRON_1_408 3' exon 26.189537 141.123403 26.189537 115.933866 71.0617015 1.851635602 -0.202667 161 41 SH10436 10436 RUF8 RUF8 106 125 22.338089 94.472567 58.405328 1.766452467 -0.202682 109 84 SH2182 2182 Met2 tRNA 41 55 21.690223 89.027602 55.3589125 1.74318755 -0.202728 192 7 SH15734 15734 YBR230C_2_680008_679507_INTRON_12_108 intron/exon 31.042599 154.914072 31.042599 124.871473 77.957036 1.891855318 -0.202803 200 61 SH20970 20970 YML034W spliced 28.671906 120.976091 74.8239985 1.874040913 -0.202808 21 51 SH2002 2002 Lys3 5' flank 24.8222 111.921481 68.3718405 1.834877271 -0.202863 162 16 SH9047 9047 snR17a / U3a 3' 22.131659 92.743028 57.4373435 1.759194345 -0.202935 22 67 SH3535 3535 Tyr2 5' flank 22.490789 95.787342 59.1390655 1.771874458 -0.202958 88 13 SH6758 6758 snR50 5' 23.729947 105.741758 64.7358525 1.811144872 -0.202964 4 4 SH19173 19173 YPL079W_16_406631_407534_INTRON_12_432 intron 22.58307 118.147053 22.58307 96.563983 59.5735265 1.775053309 -0.203006 137 63 SH12739 12739 MT COX1 COX1ai1 21.953047 112.204091 21.953047 91.251044 56.6020455 1.752832126 -0.203068 123 94 SH21696 21696 copy of SH10661 95.270229 231.6118 163.4410145 2.213361049 -0.203106 200 102 SH5855 5855 snR35 snR35 461 482 23.365251 103.248673 63.306962 1.801451473 -0.203192 48 11 SH19182 19182 YPL079W_16_406631_407534_INTRON_12_432 intron 47.362496 198.265343 47.362496 151.902847 99.6326715 1.998401775 -0.203204 14 89 SH18116 18116 YLR367W_12_855877_857316_INTRON_698_1180 3' exon 23.457169 126.505919 23.457169 104.04875 63.7529595 1.80450035 -0.203215 135 94 SH19727 19727 Negative Control 41.106789 141.564951 91.33587 1.96064137 -0.203235 129 22 SH14215 14215 MT ATP9 ATP9 1373.765827 3536.123393 1373.765827 2163.357566 1768.561697 3.247620215 -0.203258 154 89 SH11062 11062 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2196 2214 673.099915 1144.728794 908.9143545 2.958522962 -0.203299 169 17 SH7388 7388 snR68 3' 73.69363 195.436589 134.5651095 2.128932469 -0.203331 145 90 SH14711 14711 MT tRNA thr2 3' 24.211705 131.711276 24.211705 108.499571 66.355638 1.821877829 -0.203402 116 12 SH18441 18441 YMR142C_13_551206_550205_INTRON_5_406 intron 22.99383 122.074468 22.99383 100.080638 61.537234 1.789137972 -0.203432 174 86 SH12353 12353 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.074765 130.805358 24.074765 107.730593 65.902679 1.818903069 -0.203474 126 88 SH1737 1737 Leu7 5' flank 27.451815 118.924765 73.18829 1.8644416 -0.203511 98 76 SH20754 20754 YJR021C spliced 24.504515 110.171988 67.3382515 1.828261835 -0.203533 110 19 SH12987 12987 MT COX1 COX1ai2 21.173592 105.128375 21.173592 84.954783 53.0641875 1.724801519 -0.203567 16 68 SH12710 12710 MT ORF 8 (hypothetical) ORF8 22.760305 119.873387 22.760305 98.113082 60.4366935 1.781300696 -0.203582 110 46 SH20438 20438 YGL087C spliced 23.49418 104.418027 63.9561035 1.805881997 -0.203656 112 10 SH6359 6359 snR43 snR43 36 48 23.568597 104.89227 64.2304335 1.807740853 -0.203674 27 97 SH3379 3379 Thr4 5' flank - tRNA1 1 22.484111 95.80981 59.1469605 1.771932432 -0.203754 135 59 SH17618 17618 YJR021C_10_469271_468247_INTRON_317_396 3' exon 24.014514 130.432207 24.014514 107.417693 65.7161035 1.817671805 -0.203803 35 18 SH12127 12127 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7521 7538 44.359302 147.000105 95.6797035 1.980819821 -0.203869 16 43 SH13161 13161 MT COX1 intronic 23.282456 124.887485 23.282456 102.605029 62.9437425 1.798952562 -0.203879 107 23 SH17184 17184 YHR021C_8_148660_147862_INTRON_4_553 intron 24.906741 136.405568 24.906741 112.498827 68.702784 1.836974336 -0.203944 46 60 SH10473 10473 RUF8 RUF8 291 307 25.011094 113.098524 69.054809 1.839193928 -0.203985 179 65 SH5671 5671 snR34 snR34 276 295 24.061441 107.699278 65.8803595 1.81875596 -0.203995 181 84 SH1231 1231 Ile1 3' flank 24.012078 107.425578 65.718828 1.81768981 -0.20406 93 69 SH20159 20159 YDL130W spliced 23.259522 102.43208 62.845801 1.798276266 -0.204118 91 67 SH7399 7399 snR68 3' 23.456199 104.142684 63.7994415 1.804816877 -0.204173 52 47 SH12122 12122 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7496 7516 22.362386 94.833077 58.5977315 1.767880803 -0.204225 195 71 SH13743 13743 MT COB Exon1 22.00647 112.819022 22.00647 91.812552 56.909511 1.755184854 -0.204241 189 44 SH9806 9806 RUF4 3' 30.57806 124.185422 77.381741 1.888638497 -0.204243 193 60 SH18601 18601 YNL069C_14_494998_493953_INTRON_29_477 intron 23.58744 127.634386 23.58744 105.046946 64.317193 1.808327082 -0.204265 46 8 SH18281 18281 YML067C_13_140214_139063_INTRON_32_124 5' exon 27.005791 143.946967 27.005791 117.941176 72.4734835 1.860179137 -0.20427 118 28 SH159 159 Arg2 5' flank 24.438241 109.859847 67.149044 1.827039834 -0.20428 117 102 SH8802 8802 LSR1 / U2 RNA U2 651 667 28.847622 121.355376 75.101499 1.875648605 -0.20429 7 72 SH16500 16500 YER117W_5_396765_397649_INTRON_43_513 intron 22.88954 121.173344 22.88954 99.283804 61.086672 1.785946465 -0.204326 186 84 SH9364 9364 RUF1 RUF1 396 413 24.512927 110.290504 67.4017155 1.82867095 -0.204351 85 77 SH5117 5117 snR11 snR11 186 203 132.406642 292.955595 212.6811185 2.327728936 -0.204361 160 61 SH11816 11816 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5966 5979 169.609144 353.732794 261.670969 2.417755543 -0.204401 82 56 SH19951 19951 YBL050W spliced 340.309795 631.315949 485.812872 2.686469018 -0.204557 54 26 SH19593 19593 AEP2/ATP13 2.1 22.358232 94.831119 58.5946755 1.767858153 -0.204564 37 63 SH14047 14047 MT COB Cytbi4 25.536076 139.040784 25.536076 114.504708 70.020392 1.845224538 -0.204604 207 6 SH10084 10084 RUF6 RUF6 266 285 34.894156 131.336723 83.1154395 1.919681706 -0.204666 28 3 SH15510 15510 YBR048W_2_332790_333771_INTRON_46_556 intron 25.08832 137.527159 25.08832 113.438839 69.2635795 1.840504932 -0.204701 205 63 SH3730 3730 Val3 3' flank 24.026208 107.563243 65.7947255 1.818191079 -0.204745 191 64 SH971 971 Gly1 3' flank 22.729861 97.983346 60.3566035 1.780724792 -0.20485 214 22 SH17550 17550 YJL189W_10_75932_76473_INTRON_7_392 5' exon 23.049426 122.754709 23.049426 100.705283 61.8773545 1.791531738 -0.204883 61 78 SH20300 20300 YEL012W spliced 23.701768 105.744799 64.7232835 1.811060542 -0.204914 75 100 SH17724 17724 YKL156W_11_158616_159214_INTRON_4_353 intron 25.868997 140.189475 25.868997 115.320478 70.5947375 1.848772328 -0.205006 32 47 SH9824 9824 RUF5-1 5' 24.355962 109.464452 66.910207 1.825492373 -0.205117 127 66 SH14628 14628 MT 21S rRNA Sce1 endonuc 21.732484 110.339309 21.732484 89.606825 55.6696545 1.745618526 -0.205171 94 51 SH11443 11443 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4101 4118 19349.30472 22173.15548 20761.2301 4.317253082 -0.205225 67 63 SH9377 9377 RUF1 RUF1 461 476 444.82963 796.980269 620.9049495 2.793025122 -0.205275 130 93 SH19296 19296 YPL175W_16_218629_220087_INTRON_18_117 3' exon 38.867157 175.913175 38.867157 138.046018 88.4565875 1.946730181 -0.205416 115 15 SH18270 18270 YML056C_13_164176_162194_INTRON_461_868 intron 24.910939 136.566269 24.910939 112.65533 68.7831345 1.837481963 -0.205444 46 66 SH18398 18398 YMR125W_13_517538_520445_INTRON_26_347 intron 24.485211 133.715534 24.485211 110.230323 67.357767 1.828387681 -0.205477 45 102 SH10758 10758 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 676 691 250.801686 486.121486 368.461586 2.566392217 -0.205494 205 102 SH20809 20809 YKL186C spliced 23.844529 106.600687 65.222608 1.814398161 -0.205515 166 18 SH20953 20953 YML024W spliced 75.54743 198.783079 137.1652545 2.137244114 -0.205553 209 95 SH9302 9302 RUF1 RUF1 86 102 28.424577 120.723424 74.5740005 1.872587441 -0.205563 32 20 SH1450 1450 Leu2 tRNA 21 35 23.744428 106.040976 64.892702 1.812195858 -0.205583 97 95 SH13515 13515 MT COX1 intronic 25.527586 139.078524 25.527586 114.550938 70.039262 1.845341561 -0.205697 26 47 SH1304 1304 Ile3 5' flank 22.99789 100.350561 61.6742255 1.790103704 -0.20572 149 60 SH11711 11711 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5441 5454 15491.08126 18239.74074 16865.411 4.226996929 -0.205807 138 11 SH18740 18740 YNL162W_14_331319_332151_INTRON_5_516 intron 22.30549 115.810007 22.30549 94.504517 58.4050035 1.766450054 -0.205823 60 24 SH20386 20386 YFL034C-B spliced 23.423681 104.04685 63.7352655 1.804379799 -0.205926 8 6 SH13207 13207 MT COX1 COX1-ai4 21.594495 109.128024 21.594495 88.533529 55.064012 1.740867851 -0.205943 3 93 SH2936 2936 Ser1 5' flank 26.18601 116.132756 71.159383 1.852232174 -0.206031 155 97 SH4314 4314 telomerase RNA telomerase 606 624 25.18979 113.766929 69.4783595 1.841849555 -0.2061 75 24 SH2984 2984 Ser1 3' flank 23.549004 104.984493 64.2667485 1.807986328 -0.206134 6 71 SH8255 8255 snoRNA cluster4 5' 24.715919 135.319497 24.715919 111.603578 68.1597485 1.833527979 -0.20615 168 14 SH3739 3739 Val4 5' flank 24.09016 108.046619 66.0683895 1.81999372 -0.206177 170 55 SH4752 4752 snR5 5' 22.462418 95.870774 59.166596 1.772076584 -0.206218 24 44 SH14781 14781 MT ORF11; tRNA Leu; tRNA Gln tRNA / 3' 25.472476 138.925853 25.472476 114.453377 69.9629265 1.844867967 -0.206257 171 67 SH8919 8919 LSR1 / U2 RNA 3' 26.048256 115.827501 70.9378785 1.850878196 -0.206355 26 53 SH10052 10052 RUF6 RUF6 106 123 24.67278 111.379965 68.0263725 1.832677313 -0.206408 28 4 SH879 879 Glu3 5' flank 22.946734 99.984824 61.465779 1.78863339 -0.206416 104 62 SH7254 7254 snR65 snR65 46 65 24.961572 113.035321 68.9984465 1.838839313 -0.206465 33 67 SH19138 19138 YPL075W_16_412249_415357_INTRON_9_759 intron 25.473136 138.945158 25.473136 114.472022 69.972579 1.844927881 -0.206538 68 69 SH7872 7872 snoRNA cluster1 snR73 132.637367 425.368611 132.637367 293.731244 213.1843055 2.328755229 -0.206612 167 91 SH96 96 Ala2 3' flank 23.716156 105.968695 64.8424255 1.811859252 -0.206633 2 43 SH17399 17399 YIL069C_9_232366_231550_INTRON_4_412 intron 48.975024 202.786535 48.975024 154.811511 101.8932675 2.008145489 -0.206707 43 66 SH11035 11035 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2061 2074 23.076559 101.12792 62.1022395 1.793107262 -0.206717 206 63 SH10408 10408 RUF8 5' 24.020388 107.701868 65.861128 1.818629165 -0.206776 80 45 SH2768 2768 Pro6 5' flank 21.563583 88.358009 54.960796 1.740053014 -0.20681 201 34 SH11086 11086 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2316 2331 9077.165215 11408.80513 10242.98517 4.010426544 -0.206905 122 42 SH16498 16498 YER117W_5_396765_397649_INTRON_43_513 intron 23.902507 129.949277 23.902507 107.04677 65.4746385 1.816073109 -0.206925 5 95 SH12000 12000 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'ETS 6886 6903 54.665359 164.158393 109.411876 2.039064465 -0.207131 180 15 SH19936 19936 YBL027W spliced 27.303944 118.814424 73.059184 1.863674817 -0.207171 28 72 SH4976 4976 snR10 5' 23.21054 102.334487 62.7725135 1.797769519 -0.207217 106 73 SH14067 14067 MT COB Cytbi4 33.509442 161.65756 33.509442 129.148118 81.32878 1.910244258 -0.207218 137 87 SH19681 19681 SIR1 2.4 23.336163 103.433863 63.385013 1.801986584 -0.207319 117 23 SH16456 16456 YER074W-A_0_5_307649_INTRON_95_196 intron 22.457633 117.398104 22.457633 95.940471 59.199052 1.772314752 -0.207334 98 75 SH20075 20075 YCR031C spliced 37.834067 136.450686 87.1423765 1.9402294 -0.20737 124 13 SH19397 19397 YPR063C_16_678315_677807_INTRON_42_127 5' exon 25.929329 140.537688 25.929329 115.608359 70.768844 1.849842102 -0.20737 191 34 SH16991 16991 YGR118W_7_726968_727725_INTRON_66_385 intron 26.563962 142.669652 26.563962 117.10569 71.834826 1.856335044 -0.207397 19 42 SH20808 20808 YKL186C spliced 25.579708 114.779687 70.1796975 1.846211492 -0.207413 90 89 SH8722 8722 LSR1 / U2 RNA U2 251 268 22.298833 94.616039 58.457436 1.766839763 -0.207527 108 53 SH14967 14967 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 23.608096 128.04599 23.608096 105.437894 64.522995 1.809714518 -0.207589 183 46 SH8050 8050 snoRNA cluster 2 intergenic 25.546192 139.26749 25.546192 114.721298 70.133745 1.84592703 -0.207767 188 93 SH11936 11936 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6566 6583 223.044706 441.410538 332.227622 2.521435738 -0.207775 52 81 SH10539 10539 RUF8 RUF8 621 637 25.011635 113.441114 69.2263745 1.840271587 -0.207805 151 100 SH10586 10586 RUF8 RUF8 856 868 27.158927 118.520373 72.83965 1.86236785 -0.207836 163 68 SH15700 15700 YBR220C_2_663261_662457_INTRON_302_722 intron 24.257913 132.403629 24.257913 109.145716 66.7018145 1.824137648 -0.207898 76 4 SH12155 12155 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7661 7678 2171.505163 3255.243112 2713.374138 3.433509681 -0.207944 127 64 SH12456 12456 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank / 5S 21.974063 112.870121 21.974063 91.896058 56.9350605 1.755379786 -0.207954 82 80 SH7276 7276 snR65 3' 22.203779 93.849651 58.026715 1.763627985 -0.207995 108 27 SH17237 17237 YHR079C-A_8_262554_262193_INTRON_114_199 5' exon 21.092466 104.807235 21.092466 84.714769 52.9036175 1.72348537 -0.208034 35 12 SH16436 16436 YER074W_5_306319_307192_INTRON_4_469 intron 22.121875 114.279507 22.121875 93.157632 57.6397535 1.760722115 -0.208051 117 81 SH5801 5801 snR35 snR35 191 213 29.6363 122.880125 76.2582125 1.882286621 -0.208076 168 28 SH21103 21103 YNL050C spliced 24.675519 111.544202 68.1098605 1.833209991 -0.208107 181 8 SH18948 18948 YOL127W_15_80347_81189_INTRON_14_427 intron 25.918286 140.546942 25.918286 115.628656 70.773471 1.849870496 -0.208127 177 57 SH20898 20898 YLR306W spliced 24.531407 110.731882 67.6316445 1.830149948 -0.208227 98 74 SH1686 1686 Leu6 5' flank - tRNA 11 11 113.356877 262.410892 187.8838845 2.273889531 -0.208237 78 35 SH6186 6186 snR40 5' - 9 -9 9 49.793178 156.27521 103.034194 2.012981378 -0.20828 190 70 SH11521 11521 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4491 4511 1643.81689 2546.735428 2095.276159 3.321241271 -0.208299 133 67 SH1905 1905 Lys1 5' flank 40.00199 140.126559 90.0642745 1.954552555 -0.208323 189 84 SH13270 13270 MT COX1 intronic 24.568647 134.521929 24.568647 110.953282 67.7609645 1.830979579 -0.208329 195 30 SH5152 5152 snR13 5' 266.236384 512.310535 389.2734595 2.590254795 -0.208371 173 36 SH20576 20576 YHR012W spliced 22.988709 100.555732 61.7722205 1.790793213 -0.208474 116 7 SH20860 20860 YLR078C spliced 23.189647 102.289795 62.739721 1.797542583 -0.208512 58 28 SH6852 6852 snR52 3' 21.588261 88.722905 55.155583 1.741589479 -0.208543 125 99 SH15719 15719 YBR255C-A_2_727032_726576_INTRON_64_157 5' exon 28.497036 148.519318 28.497036 121.022282 74.759659 1.873667312 -0.208596 159 15 SH11370 11370 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3736 3753 3910.573189 5455.462818 4683.018004 3.670525827 -0.208639 144 81 SH14498 14498 MT 21S rRNA 21S rRNA3 197.607086 596.911038 197.607086 400.303952 298.955519 2.475606575 -0.208672 12 80 SH18118 18118 YLR388W_12_898158_898821_INTRON_1_488 5' exon 26.707978 143.234844 26.707978 117.526866 72.117422 1.858040193 -0.208746 214 80 SH1892 1892 Lys1 5' flank 387.318871 708.216925 547.767898 2.738596577 -0.208839 103 66 SH13358 13358 MT COX1 intronic 22.69804 119.829981 22.69804 98.131941 60.4149905 1.781144712 -0.209003 5 14 SH1718 1718 Leu6 3' flank 22.959013 100.35839 61.6587015 1.789994374 -0.209029 158 87 SH15014 15014 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 25.370331 138.754745 25.370331 114.384414 69.8773725 1.844336566 -0.209145 20 90 SH18135 18135 YLR406C_12_931752_931062_INTRON_58_406 intron 28.238645 147.859232 28.238645 120.620587 74.429616 1.871745778 -0.209162 96 81 SH15374 15374 YBL027W_2_168385_169338_INTRON_3_386 intron 22.682546 119.699348 22.682546 98.016802 60.349674 1.780674928 -0.209164 52 97 SH382 382 Asn1 5' flank - tRNA9 5' flank 9 28.393995 120.883824 74.6389095 1.872965286 -0.209188 173 97 SH9416 9416 RUF2 5' 88.487733 220.993836 154.7407845 2.189604794 -0.209194 38 24 SH9144 9144 snR7 U5 RNA 5' - 7 -9 7 23.158034 102.095909 62.6269715 1.796761411 -0.209269 185 98 SH6672 6672 snR48 3' 24.443133 110.324624 67.3838785 1.828556005 -0.209338 203 5 SH18947 18947 YOL127W_15_80347_81189_INTRON_14_427 intron 26.246804 141.732824 26.246804 116.48602 71.366412 1.853493863 -0.209431 8 55 SH12207 12207 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7921 7946 6423.617575 8434.997249 7429.307412 3.870948329 -0.209442 168 18 SH11698 11698 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5376 5391 21604.40165 24500.02473 23052.21319 4.362712627 -0.209504 86 78 SH9853 9853 RUF5-1 RUF5-1 71 87 22.344056 95.203524 58.77379 1.769183697 -0.209534 28 56 SH10852 10852 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1146 1164 245.215275 478.216495 361.715885 2.558367582 -0.209596 112 44 SH13858 13858 MT COB Cytbi2 21.072593 104.771238 21.072593 84.698645 52.885619 1.723337592 -0.209631 199 12 SH13669 13669 MT ATP6 ATP6 26.251932 141.764181 26.251932 116.512249 71.3820905 1.853589263 -0.209659 51 79 SH7495 7495 snR71 3' 25.181972 113.963675 69.5728235 1.842439629 -0.209666 5 60 SH13051 13051 MT COX1 COX1ai2 24.67474 135.351132 24.67474 111.676392 68.175566 1.833628752 -0.209667 48 59 SH12208 12208 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7926 7953 25871.88544 28717.20018 27294.54281 4.436075824 -0.20981 213 37 SH20957 20957 YML024W spliced 39.229358 138.957508 89.093433 1.949845694 -0.209811 73 48 SH15365 15365 YBL027W_2_168385_169338_INTRON_3_386 intron 23.617208 128.291783 23.617208 105.674575 64.6458915 1.810540929 -0.209825 212 17 SH20870 20870 YLR128W spliced 23.539654 105.24597 64.392812 1.808837391 -0.209944 101 62 SH20987 20987 YML067C spliced 24.918569 113.09873 69.0086495 1.838903528 -0.209957 28 96 SH10652 10652 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 146 163 26.697262 117.579273 72.1382675 1.858165708 -0.209987 192 99 SH11774 11774 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5756 5773 878.185836 1455.492496 1166.839166 3.067010998 -0.209992 135 98 SH7827 7827 snoRNA cluster1 intergenic 22.249161 115.708731 22.249161 94.45957 58.3543655 1.766073351 -0.210247 67 95 SH13151 13151 MT COX1 intronic 27.423268 145.710186 27.423268 119.286918 73.355093 1.865430272 -0.210281 58 21 SH9391 9391 RUF1 RUF1 531 548 57.896188 169.814655 113.8554215 2.056353715 -0.210368 120 41 SH16870 16870 YGL187C_7_150529_149708_INTRON_1_342 intron 23.772846 129.378729 23.772846 106.605883 65.1893645 1.814176747 -0.210427 117 47 SH3064 3064 Ser3 tRNA 16 30 3107.734397 4465.695606 3786.715002 3.57826262 -0.210469 35 87 SH12638 12638 MT_15S MT_15S 27.276814 145.241428 27.276814 118.964614 73.120714 1.864040423 -0.210547 157 92 SH8306 8306 snoRNA cluster4 intergenic 27.483617 145.904696 27.483617 119.421079 73.452348 1.866005683 -0.210635 138 72 SH13248 13248 MT COX1 COX1-ai4 21.803179 111.51713 21.803179 90.713951 56.258565 1.75018865 -0.210642 148 7 SH19362 19362 YPR028W_16_623522_624197_INTRON_52_184 exon/intron 22.823366 121.196212 22.823366 99.372846 61.098106 1.786027748 -0.210731 82 7 SH17052 17052 YGR214W_7_920570_921783_INTRON_91_545 intron 29.582118 151.535084 29.582118 122.952966 76.267542 1.88233975 -0.210797 47 36 SH14563 14563 MT 21S rRNA 21S rRNA3 50.11436 206.141592 50.11436 157.027232 103.570796 2.015237314 -0.210874 181 90 SH20226 20226 YDR129C spliced 24.422342 110.340907 67.3816245 1.828541477 -0.210897 58 49 SH3386 3386 Thr4 tRNA 16 30 33.195409 128.880668 81.0380385 1.908688921 -0.210911 120 52 SH312 312 Arg4 3' flank 25.470884 114.735091 70.1029875 1.845736526 -0.210951 188 7 SH19446 19446 CYC1 24.328582 109.820557 67.0745695 1.826557894 -0.211068 4 98 SH19237 19237 YPL090C_16_378390_377286_INTRON_7_400 intron 29.895769 152.382932 29.895769 123.487163 76.691466 1.88474704 -0.211146 132 39 SH12834 12834 MT COX1 COX1ai1 25.30261 138.646057 25.30261 114.343447 69.8230285 1.843998682 -0.211147 72 4 SH19979 19979 YBL087C spliced 26.485225 117.15792 71.8215725 1.85625491 -0.21121 172 78 SH2041 2041 Lys3 3' flank 24.189759 109.042661 66.61621 1.823579921 -0.211227 105 10 SH16332 16332 YDR471W_4_1401759_1402553_INTRON_32_415 intron 22.480604 118.001726 22.480604 96.521122 59.500863 1.774523265 -0.211262 83 83 SH1423 1423 Leu1 3' flank 25.825103 115.600083 70.712593 1.849496763 -0.211269 84 3 SH2158 2158 Met2 5' flank 21.508086 88.312758 54.910422 1.739654781 -0.211293 214 79 SH2232 2232 Phe1 tRNA-exon/intron 36 54 24.841352 112.777263 68.8093075 1.837647187 -0.211329 94 19 SH17539 17539 YJL177W_10_90783_91654_INTRON_310_626 intron 24.02478 131.151717 24.02478 108.126937 66.0758585 1.820042814 -0.211502 36 61 SH1376 1376 Leu1 5' flank 23.215812 102.840167 63.0279895 1.799533454 -0.211587 8 2 SH21118 21118 YNL096C spliced 24.56305 111.209434 67.886242 1.831781768 -0.211635 44 78 SH14320 14320 MT VAR1 includes 5’ processing site VAR1 22.166854 115.059237 22.166854 93.892383 58.0296185 1.763649715 -0.211642 120 6 SH20017 20017 YBR089C-A spliced 26.847809 118.036565 72.442187 1.859991553 -0.211669 179 50 SH18926 18926 YOL121C_15_92849_92025_INTRON_21_410 intron 24.885426 136.948064 24.885426 113.062638 68.974032 1.838685614 -0.211695 213 13 SH5 5 Ala1 5' flank 22.723605 98.620874 60.6722395 1.782990026 -0.211697 43 92 SH6906 6906 snR56 3' 26.912645 118.191899 72.552272 1.860651017 -0.211731 28 71 SH20938 20938 YLR406C spliced 25.311929 114.404026 69.8579775 1.844216008 -0.211776 169 82 SH18031 18031 YLR316C_12_766358_765266_INTRON_230_285 intron 24.496741 134.339455 24.496741 110.842714 67.6697275 1.830394428 -0.21178 159 67 SH5122 5122 snR11 snR11 211 228 32.667099 128.088868 80.3779835 1.905137107 -0.211829 100 63 SH12938 12938 MT COX1 COX1ai2 22.93244 122.356273 22.93244 100.423833 61.6781365 1.790131244 -0.211877 126 65 SH16233 16233 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 27.153259 144.915895 27.153259 118.762636 72.9579475 1.863072608 -0.211892 187 62 SH6045 6045 snR37 snR37 141 159 46.876548 151.795929 99.3362385 1.997107711 -0.211933 177 89 SH1810 1810 Leu8 tRNA 76 90 24.187057 109.094905 66.640981 1.823741382 -0.212017 155 92 SH3196 3196 Ser5 3' flank 25.548374 114.986773 70.2675735 1.846754957 -0.212036 124 103 SH5767 5767 snR35 snR35 21 33 24.805988 112.638551 68.7222695 1.837097493 -0.212055 199 84 SH6745 6745 snR50 5' 24.333738 109.935012 67.134375 1.82694495 -0.212055 6 88 SH6576 6576 snR47 5' - 2 -14 2 28.523333 121.274447 74.89889 1.874475382 -0.212148 137 41 SH21529 21529 copy of SH3749 23.812652 106.979916 65.396284 1.815553071 -0.212196 207 72 SH17158 17158 YHR016C_8_138446_136872_INTRON_48_215 5' exon 27.500414 146.041763 27.500414 119.541349 73.5208815 1.866410706 -0.212218 4 50 SH10237 10237 RUF6 RUF6 1031 1045 26.135973 116.400961 71.268467 1.852897417 -0.212292 86 88 SH10719 10719 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 481 499 23.913466 107.560989 65.7372275 1.817811384 -0.212295 83 9 SH6349 6349 snR43 5' - 2 -14 2 23.797183 106.905434 65.3513085 1.815254288 -0.212355 69 104 SH4969 4969 snR9 3' 39.119157 138.955174 89.0371655 1.949571326 -0.212367 13 4 SH7681 7681 snoRNA cluster1 intergenic 152.028848 477.587768 152.028848 326.55892 239.293884 2.378931599 -0.212385 173 20 SH6681 6681 snR49 5' 21.963817 92.261501 57.112659 1.75673238 -0.212648 199 23 SH17531 17531 YJL177W_10_90783_91654_INTRON_310_626 5' exon 23.711719 129.160928 23.711719 106.449209 65.080464 1.813450641 -0.2127 122 67 SH19794 19794 Negative Control 26.261418 116.724604 71.493011 1.854263588 -0.212728 43 57 SH18139 18139 YLR406C_12_931752_931062_INTRON_58_406 intron 33.705832 162.532461 33.705832 129.826629 81.7662305 1.912573977 -0.212792 179 18 SH1029 1029 Gly2 3' flank 22.829818 99.64378 61.236799 1.787012481 -0.212845 108 95 SH18771 18771 YNL246W_14_185459_186348_INTRON_33_127 intron/exon 24.554936 134.833113 24.554936 111.278177 67.9165565 1.831975658 -0.212955 132 34 SH21297 21297 YPL198W spliced 23.448239 104.980915 64.214577 1.807633626 -0.212998 191 71 SH9995 9995 RUF5-1 3' 43.470319 146.238687 94.854503 1.977057953 -0.213037 171 77 SH10523 10523 RUF8 RUF8 541 560 24.247309 109.52753 66.8874195 1.825344441 -0.213053 175 68 SH14954 14954 MT tRNA Met 3' 22.020986 113.809005 22.020986 92.788019 57.4045025 1.758945957 -0.213071 43 76 SH13826 13826 MT COB Cytbi2 124.36359 404.658163 124.36359 281.294573 202.8290815 2.307130224 -0.213128 100 49 SH14275 14275 MT VAR1 includes 5’ processing site VAR1 24.32777 133.325243 24.32777 109.997473 67.1626215 1.827127639 -0.213174 171 16 SH14386 14386 MT 21S rRNA 5' 21.949003 113.141501 21.949003 92.192498 57.0707505 1.756413584 -0.213234 101 12 SH6221 6221 snR40 3' 24.497174 110.977466 67.73732 1.83082801 -0.2133 175 89 SH1252 1252 Ile2 5' flank 24.084903 108.628957 66.35693 1.821886285 -0.21338 149 57 SH15989 15989 YDL136W_4_217600_218367_INTRON_4_408 intron 22.870828 121.926095 22.870828 100.055267 61.4630475 1.78861409 -0.213433 124 7 SH15830 15830 YDL075W_4_322225_322987_INTRON_58_478 exon/intron 30.658582 154.545432 30.658582 124.88685 77.772716 1.890827266 -0.213537 187 87 SH12849 12849 MT COX1 COX1ai1 22.668198 120.006014 22.668198 98.337816 60.503007 1.78177696 -0.21356 211 71 SH15013 15013 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 24.599266 135.185931 24.599266 111.586665 68.0929655 1.833102248 -0.213578 33 58 SH20708 20708 YJL024C spliced 22.843172 99.84207 61.342621 1.787762328 -0.213666 147 6 SH14837 14837 MT tRNA Asp 5' / tRNA Asp 24.719287 136.003559 24.719287 112.284272 68.5017795 1.835701853 -0.213681 27 49 SH3161 3161 Ser5 5' flank 27.002467 118.524141 72.763304 1.861912411 -0.213682 20 92 SH10524 10524 RUF8 RUF8 546 565 24.076921 108.619657 66.348289 1.821829728 -0.213805 70 78 SH6047 6047 snR37 snR37 151 167 211.157458 423.716133 317.4367955 2.501657266 -0.213871 202 81 SH16904 16904 YGL232W_7_62074_63001_INTRON_58_115 5' exon 24.077638 131.711497 24.077638 108.633859 66.3557485 1.821878552 -0.213923 86 56 SH4355 4355 telomerase RNA telomerase 811 828 22.268845 94.997614 58.6332295 1.768143816 -0.21397 127 95 SH6483 6483 snR46 5' 21.651464 89.764615 55.7080395 1.745917875 -0.21406 87 54 SH10009 10009 RUF5-1 3' 26.103276 116.43277 71.268023 1.852894711 -0.214061 167 102 SH3266 3266 Thr2 5' flank 23.327227 104.074629 63.700928 1.804145759 -0.214071 35 24 SH15668 15668 YBR191W_2_606228_607098_INTRON_12_399 5' exon 35.220806 166.738134 35.220806 132.517328 83.869067 1.923601812 -0.214085 11 53 SH10070 10070 RUF6 RUF6 196 215 25.281998 114.477459 69.8797285 1.844351209 -0.21417 181 27 SH7565 7565 snR79 3' 23.341775 104.222504 63.7821395 1.804699083 -0.214263 22 102 SH14584 14584 MT 21S rRNA intronic 24.628542 135.443791 24.628542 111.815249 68.2218955 1.833923782 -0.21427 184 5 SH5687 5687 snR34 snR34 356 372 41.953031 143.810257 92.881644 1.967929894 -0.214351 112 52 SH10643 10643 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 101 124 23.910912 107.723573 65.8172425 1.818339683 -0.214392 55 96 SH16824 16824 YGL178W_7_167356_170575_INTRON_4_643 intron 26.414602 142.606673 26.414602 117.192071 71.8033365 1.856144625 -0.214433 152 60 SH8942 8942 snR17a / U3a 5' - 10 -4 10 22.925346 100.63077 61.778058 1.790834252 -0.214474 16 85 SH15641 15641 YBR186W_2_600511_602318_INTRON_1552_1664 intron/exon 23.952656 130.930774 23.952656 107.978118 65.965387 1.819316115 -0.21459 62 77 SH7225 7225 snR65 5' 60.329319 174.234891 117.282105 2.069231752 -0.2146 50 74 SH12139 12139 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7581 7599 23.116326 102.295893 62.7061095 1.797309857 -0.21462 185 79 SH777 777 Glu1 5' flank 23.937527 107.901271 65.919399 1.819013239 -0.214701 100 92 SH13815 13815 MT COB Cytbi2 21.604084 110.043935 21.604084 89.439851 55.5219675 1.744464848 -0.214822 52 24 SH10336 10336 RUF7 RUF7 291 310 24.808219 112.900612 68.8544155 1.837931796 -0.214872 55 79 SH13294 13294 MT COX1 COX1-ai5a 24.556509 135.013341 24.556509 111.456832 68.0066705 1.832551513 -0.214896 98 57 SH2253 2253 Phe1 3' flank 23.473423 105.294137 64.38378 1.808776471 -0.215066 31 69 SH21601 21601 copy of SH6672 23.327394 104.195215 63.7613045 1.804557194 -0.215186 97 17 SH3199 3199 Ser5 3' flank 21.959261 92.472713 57.215987 1.757517394 -0.215234 15 26 SH16676 16676 YFR032C-A_6_223758_223245_INTRON_1_331 3' exon 1349.276503 3493.911635 1349.276503 2145.635132 1747.455818 3.242406204 -0.215246 132 77 SH15076 15076 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.127322 124.594383 23.127322 102.467061 62.7971915 1.797940221 -0.215341 209 47 SH10363 10363 RUF7 RUF7 426 443 26.572604 117.623298 72.097951 1.857922922 -0.21538 70 11 SH13456 13456 MT COX1 intronic 23.25284 125.822315 23.25284 103.569475 63.4111575 1.802165681 -0.21543 161 89 SH12823 12823 MT COX1 COX1ai1 24.850451 137.045621 24.850451 113.19517 69.0228105 1.838992639 -0.215453 23 23 SH12779 12779 MT COX1 COX1ai1 21.98319 113.684904 21.98319 92.701714 57.342452 1.75847626 -0.215496 71 91 SH15211 15211 MT COX3 cox3 24.613344 135.452965 24.613344 111.839621 68.2264825 1.833952981 -0.215542 64 83 SH13286 13286 MT COX1 Exon 5a 22.101026 114.815509 22.101026 93.714483 57.9077545 1.762736725 -0.215567 40 27 SH16422 16422 YER074W_5_306319_307192_INTRON_4_469 5' exon 23.482411 127.870822 23.482411 105.388411 64.435411 1.809124603 -0.21559 137 64 SH19102 19102 YOR312C_15_901173_900242_INTRON_2_427 intron 21.835376 112.302013 21.835376 91.466637 56.6510065 1.75320763 -0.215694 98 96 SH12833 12833 MT COX1 COX1ai1 21.717737 111.192622 21.717737 90.474885 56.096311 1.748934302 -0.215696 146 3 SH18156 18156 YLR426W_12_987057_988108_INTRON_81_151 intron 58.348202 228.399497 58.348202 171.051295 114.6997485 2.059562466 -0.215742 51 26 SH17559 17559 YJL189W_10_75932_76473_INTRON_7_392 intron 1585.683459 4063.611688 1585.683459 2478.928229 2032.305844 3.307989066 -0.215891 163 51 SH15166 15166 MT tRNA Val tRNA / 3' 22.228334 116.069091 22.228334 94.840757 58.5345455 1.767412251 -0.215904 113 20 SH11626 11626 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5016 5029 51.810652 160.266261 106.0384565 2.025463397 -0.215951 116 21 SH5989 5989 snR36 3' 20.697132 82.365097 51.5311145 1.712069535 -0.215996 18 96 SH17519 17519 YJL136C_10_156971_156248_INTRON_25_484 intron 23.692469 129.319989 23.692469 106.62752 65.1599945 1.813981039 -0.216142 181 57 SH5584 5584 snR33 3' 22.45172 96.765321 59.6085205 1.775308343 -0.216181 173 81 SH16962 16962 YGR034W_7_555923_556666_INTRON_20_496 5' exon 22.124261 115.098527 22.124261 93.974266 58.0492635 1.763796714 -0.216186 111 4 SH17156 17156 YHR012W_8_129473_130440_INTRON_49_167 3' exon 23.990595 131.323417 23.990595 108.332822 66.1617085 1.820606712 -0.216221 76 33 SH14385 14385 MT ORF9 and ORF10 (hypothetical) 3' 21.727829 111.338777 21.727829 90.610948 56.1693885 1.749499696 -0.216236 16 86 SH17340 17340 YIL018W_9_316766_317930_INTRON_5_404 intron 23.87208 130.53683 23.87208 107.66475 65.768415 1.818017376 -0.216314 111 24 SH12319 12319 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 22.888727 122.394781 22.888727 100.506054 61.6973905 1.790266796 -0.21632 6 62 SH16203 16203 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron/exon 23.240401 125.796642 23.240401 103.556241 63.398321 1.802077756 -0.216328 26 17 SH19271 19271 YPL143W_16_282121_282969_INTRON_20_544 intron 21.936696 113.323647 21.936696 92.386951 57.1618235 1.757106075 -0.21633 29 79 SH11252 11252 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3146 3163 8580.915473 10925.84919 9753.382329 3.989155249 -0.216334 185 30 SH2837 2837 Pro7 5' flank - tRNA7 7 55.05215 165.630452 110.341301 2.0427381 -0.21635 59 20 SH19160 19160 YPL075W_16_412249_415357_INTRON_9_759 intron 26.176086 141.929629 26.176086 116.753543 71.4648145 1.854092271 -0.216454 111 34 SH5654 5654 snR34 snR34 191 212 20.949607 84.335396 52.6425015 1.721336518 -0.216459 210 31 SH10439 10439 RUF8 RUF8 121 137 29.897074 123.814039 76.8555565 1.885675272 -0.216578 73 29 SH4722 4722 snR4 snR4 146 161 21.35507 87.532218 54.443644 1.735947186 -0.216584 74 13 SH15715 15715 YBR220C_2_663261_662457_INTRON_302_722 intron/exon 21.378698 108.110477 21.378698 87.731779 54.5552385 1.736836459 -0.216626 111 39 SH16343 16343 YDR500C_4_1450856_1450201_INTRON_8_396 intron 23.07167 124.202168 23.07167 102.130498 62.601084 1.796581854 -0.216738 6 17 SH18918 18918 YOL121C_15_92849_92025_INTRON_21_410 5' exon 43.794107 189.857048 43.794107 147.062941 95.428524 1.979678207 -0.216872 198 53 SH12611 12611 MT_15S MT_15S 46.356761 196.682876 46.356761 151.326115 98.841438 1.994939055 -0.216906 45 87 SH21802 21802 copy of SH15072 23.289009 104.054627 63.671818 1.80394725 -0.217016 181 15 SH13728 13728 MT COB Exon1 23.186787 125.362753 23.186787 103.175966 63.1813765 1.800589083 -0.217155 25 56 SH19931 19931 YBL026W spliced 26.388509 117.301679 71.845094 1.856397117 -0.217184 105 53 SH14023 14023 MT COB Exon4 23.88728 130.721805 23.88728 107.834525 65.8609025 1.818627678 -0.217297 144 33 SH18711 18711 YNL130C_14_381156_379555_INTRON_30_470 intron 23.409249 127.530077 23.409249 105.120828 64.2650385 1.807974772 -0.217376 185 75 SH11239 11239 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3081 3097 5812.965476 7767.309188 6790.137332 3.831878558 -0.217422 213 86 SH9520 9520 RUF3 5' - 4 -14 4 24.305601 110.239133 67.272367 1.827836709 -0.217439 70 73 SH11875 11875 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6261 6274 120.155404 275.079929 197.6176665 2.295825767 -0.217458 160 13 SH14821 14821 "MT tRNAs (Lys, Arg1, Gly)" intergenic / tRNA Gly 24.634364 135.765283 24.634364 112.130919 68.3826415 1.834945873 -0.217482 148 33 SH18641 18641 YNL112W_14_413636_416278_INTRON_1274_2275 5' exon 27.808882 147.186559 27.808882 120.377677 74.0932795 1.869778818 -0.217524 64 4 SH12209 12209 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.575922 135.378235 24.575922 111.802313 68.1891175 1.83371507 -0.217568 53 96 SH5915 5915 snR36 snR36 31 47 26.634175 117.907153 72.270664 1.858962045 -0.217603 122 13 SH3869 3869 RNaseP RNaseP 311 325 34.449397 131.433951 82.941674 1.918772796 -0.217655 102 86 SH16464 16464 YER093C-A_5_348396_347908_INTRON_125_199 intron 21.760167 111.780737 21.760167 91.02057 56.3903685 1.751204933 -0.217678 145 52 SH14106 14106 MT COB Cytbi4 22.404071 117.91687 22.404071 96.512799 59.458435 1.774213474 -0.217694 209 14 SH11384 11384 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3806 3826 27794.53342 30747.03004 29270.78173 4.466434321 -0.21782 135 18 SH9968 9968 RUF5-1 RUF5-1 646 663 24.372706 110.661084 67.516895 1.829412462 -0.217867 117 19 SH13208 13208 MT COX1 COX1-ai4 22.627843 120.060798 22.627843 98.432955 60.530399 1.781973537 -0.217907 56 43 SH1669 1669 Leu6 5' flank 21.691674 90.465974 56.078824 1.748798898 -0.217919 128 69 SH16218 16218 YDR381W_4_1236547_1237993_INTRON_286_1051 intron 23.345004 126.987666 23.345004 104.642662 63.993833 1.806138124 -0.217921 41 11 SH7298 7298 snR66 5' 24.434466 111.029412 67.731939 1.830793509 -0.218025 31 62 SH18160 18160 YLR426W_12_987057_988108_INTRON_81_151 3' exon 22.873991 122.43408 22.873991 100.560089 61.71704 1.790405089 -0.218074 70 15 SH5885 5885 snR35 3' 25.113983 114.317532 69.7157575 1.843330951 -0.218214 83 64 SH13037 13037 MT COX1 COX1ai2 23.746629 129.86102 23.746629 107.114391 65.43051 1.815780305 -0.21827 166 10 SH15753 15753 YCR031C_3_178212_177492_INTRON_8_314 intron 58.69704 229.557924 58.69704 171.860884 115.278962 2.061750057 -0.218308 106 48 SH13935 13935 MT COB Cytbi3 26.127443 141.886401 26.127443 116.758958 71.4432005 1.853960902 -0.218404 121 46 SH3826 3826 RNaseP RNaseP 96 110 76.881646 202.466873 139.6742595 2.145116378 -0.218426 60 78 SH7339 7339 snR68 5' 23.738958 107.087523 65.4132405 1.815665664 -0.218471 154 65 SH18045 18045 YLR333C_12_796335_795573_INTRON_1_423 intron 89.506899 312.424591 89.506899 223.917692 156.7122955 2.195103072 -0.21848 137 104 SH18004 18004 YLR287C-A_12_713158_712537_INTRON_4_433 intron 25.833415 140.898362 25.833415 116.064947 70.949181 1.850947387 -0.218507 136 99 SH6801 6801 snR52 5' 22.318558 95.87628 59.097419 1.771568514 -0.21855 101 24 SH20747 20747 YJL205C-A spliced 21.518681 89.076009 55.297345 1.74270428 -0.218568 151 101 SH15251 15251 MT tRNA fMet 3' 22.918658 122.916685 22.918658 100.998027 61.9583425 1.792099791 -0.218583 175 67 SH15703 15703 YBR220C_2_663261_662457_INTRON_302_722 intron 24.05202 131.937592 24.05202 108.885572 66.468796 1.822617812 -0.218588 105 28 SH19771 19771 Negative Control 23.214222 103.5702 63.392211 1.802035899 -0.218613 145 41 SH14905 14905 MT tRNA Ile 3' 22.688145 120.715296 22.688145 99.027151 60.857648 1.784315164 -0.218688 96 88 SH581 581 Gln1 5' flank 24.229567 109.91947 67.0745185 1.826557564 -0.218785 93 88 SH17997 17997 YLR287C-A_12_713158_712537_INTRON_4_433 intron 24.35361 133.986427 24.35361 110.632817 67.4932135 1.829260106 -0.218804 105 96 SH10195 10195 RUF6 RUF6 821 840 24.686505 112.551346 68.6189255 1.836443913 -0.218846 135 104 SH13945 13945 MT COB Cytbi3 21.970258 113.905523 21.970258 92.935265 57.4527615 1.759310908 -0.219037 53 79 SH15002 15002 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 24.890886 137.647912 24.890886 113.757026 69.323956 1.840883338 -0.219145 207 42 SH1042 1042 Gly3 5' flank 25.68681 115.754326 70.720568 1.84954574 -0.219158 43 47 SH13234 13234 MT COX1 COX1-ai4 22.485829 118.844594 22.485829 97.358765 59.922297 1.777588453 -0.21924 131 39 SH2663 2663 Pro4 5' flank 28.151606 121.075274 74.61344 1.872817063 -0.219467 56 21 SH12702 12702 MT ORF 8 (hypothetical) ORF8 22.499828 119.000258 22.499828 97.50043 60.000129 1.778152184 -0.219469 205 59 SH20194 20194 YDR005C spliced 26.473839 117.646277 72.060058 1.857694607 -0.219477 47 45 SH18096 18096 YLR367W_12_855877_857316_INTRON_698_1180 intron 22.702491 120.936434 22.702491 99.233943 60.968217 1.785103494 -0.219514 108 65 SH409 409 Asn1 3' flank 28.436467 121.562594 74.9995305 1.875058545 -0.219548 193 22 SH12202 12202 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7896 7913 30.224167 124.526422 77.3752945 1.888602315 -0.219554 29 8 SH10868 10868 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1226 1239 28.857298 122.278067 75.5676825 1.878336104 -0.219683 110 33 SH17461 17461 YIL148W_9_68708_69528_INTRON_9_442 intron 22.972759 123.55616 22.972759 101.583401 62.27808 1.794335215 -0.219711 40 14 SH12541 12541 MT_ORF6 + ORF7 (hypothetical) ORF6/7 22.195261 116.141642 22.195261 94.946381 58.570821 1.767681312 -0.219841 50 87 SH10699 10699 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 381 398 22.645211 98.776978 60.7110945 1.783268062 -0.219842 89 94 SH13320 13320 MT COX1 COX1-ai5a 23.982839 131.58053 23.982839 108.597691 66.290265 1.821449755 -0.219854 43 91 SH13534 13534 MT COX1 intronic 25.089417 138.450105 25.089417 114.360688 69.7250525 1.84338885 -0.219905 109 19 SH7732 7732 snoRNA cluster1 intergenic 23.141665 125.214979 23.141665 103.073314 63.1074895 1.800080904 -0.219907 191 40 SH21761 21761 copy of SH13393 68.319506 188.199019 128.2592625 2.108088738 -0.219936 59 93 SH15398 15398 YBL050W_2_125087_126081_INTRON_31_146 intron 49.979977 206.544203 49.979977 157.564226 103.7721015 2.016080612 -0.219994 200 80 SH11583 11583 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4801 4814 170.774023 359.087678 264.9308505 2.423132534 -0.220039 159 79 SH12054 12054 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7156 7173 33.245694 129.538901 81.3922975 1.910583308 -0.220046 140 44 SH5790 5790 snR35 snR35 136 150 22.085972 94.03392 58.059946 1.763876628 -0.220135 72 7 SH14692 14692 MT 21S rRNA 3' 20.949726 104.601549 20.949726 84.651823 52.8007745 1.722640293 -0.22016 6 42 SH15955 15955 YDL130W_4_229906_230527_INTRON_115_415 intron 23.887292 130.964538 23.887292 108.077246 65.982269 1.819427246 -0.220162 200 2 SH16864 16864 YGL187C_7_150529_149708_INTRON_1_342 intron 53.068334 214.785393 53.068334 162.717059 107.8926965 2.032992047 -0.220486 148 29 SH20110 20110 YDL064W spliced 272.715146 527.03558 399.875363 2.601924647 -0.220521 2 97 SH4589 4589 U3b (snR17b) 3' 27.691446 120.351883 74.0216645 1.869358847 -0.220538 201 47 SH6570 6570 snR47 5' 42.349681 144.93837 93.6440255 1.971480075 -0.220544 22 50 SH17840 17840 YKR094C_11_618384_617630_INTRON_9_376 intron 22.899142 122.938112 22.899142 101.03897 61.969056 1.79217488 -0.220605 19 34 SH18685 18685 YNL112W_14_413636_416278_INTRON_1274_2275 intron 22.68397 120.881536 22.68397 99.197566 60.940768 1.784907923 -0.220716 41 71 SH949 949 Gly1 5' flank - tRNA12 12 136.005659 301.794195 218.899927 2.340245617 -0.220778 44 89 SH12309 12309 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 30.045457 153.356564 30.045457 124.311107 77.178282 1.887495107 -0.22082 36 39 SH1494 1494 Leu3 5' flank 24.671894 112.649552 68.660723 1.836708372 -0.220911 80 98 SH13035 13035 MT COX1 COX1ai2 21.892955 113.350873 21.892955 92.457918 57.1754365 1.757209489 -0.220916 158 65 SH21332 21332 YPR043W spliced 70.088227 191.275286 130.6817565 2.116214963 -0.220959 211 24 SH7849 7849 snoRNA cluster1 snR74/intergenic 21.705667 111.581931 21.705667 90.876264 56.2909655 1.750438698 -0.221 79 79 SH17731 17731 YKL156W_11_158616_159214_INTRON_4_353 intron 24.151371 132.816886 24.151371 109.665515 66.908443 1.825480924 -0.221044 112 21 SH6568 6568 snR47 5' 22.913666 101.213377 62.0635215 1.792836414 -0.221075 185 77 SH19595 19595 AEP2/ATP13 2.1 23.773718 107.511792 65.642755 1.8171868 -0.221153 61 88 SH12765 12765 MT COX1 COX1ai1 23.633962 129.360284 23.633962 106.726322 65.180142 1.814115302 -0.221305 76 57 SH11613 11613 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4951 4964 1183.770403 1915.761093 1549.765748 3.190266058 -0.221349 135 67 SH13140 13140 MT COX1 intronic 27.034897 145.121459 27.034897 119.086562 73.0607295 1.863684004 -0.221398 187 35 SH16706 16706 YGL031C_7_438393_437938_INTRON_1_456 intron 26.518026 143.390375 26.518026 117.872349 72.1951875 1.858508249 -0.221424 35 43 SH5047 5047 snR10 3' 24.316097 110.644938 67.4805175 1.829178404 -0.221427 111 25 SH21668 21668 copy of SH9403 22.887459 101.026662 61.9570605 1.792090805 -0.221462 119 29 SH7007 7007 snR60 3' 24.480921 111.607462 68.0441915 1.832791058 -0.221584 99 65 SH2824 2824 Pro7 5' flank 22.872934 100.921979 61.8974565 1.791672803 -0.221664 156 58 SH21843 21843 copy of SH17173 24.863289 113.823267 69.343278 1.841004368 -0.221674 50 24 SH9196 9196 snR7 U5 RNA 3' 22.903367 101.191008 62.0471875 1.7927221 -0.221719 77 23 SH17853 17853 YKR095W-A_11_625432_625839_INTRON_39_113 exon/intron 23.806188 130.55522 23.806188 107.749032 65.77761 1.81807809 -0.221764 85 43 SH12741 12741 MT COX1 COX1ai1 23.61589 129.291501 23.61589 106.675611 65.1457505 1.813886092 -0.221932 85 58 SH1103 1103 Gly4 5' flank - tRNA3 3 26.520774 117.912776 72.216775 1.85863809 -0.221966 50 71 SH17514 17514 YJL136C_10_156971_156248_INTRON_25_484 intron 24.887204 137.875838 24.887204 113.988634 69.437919 1.841596697 -0.221976 99 26 SH6348 6348 snR43 5' 23.889664 108.256865 66.0732645 1.820025765 -0.222118 185 23 SH9392 9392 RUF1 536-550 + 3' 536 38.597157 138.773496 88.6853265 1.947851769 -0.22216 45 5 SH16030 16030 YDL191W_4_117665_118518_INTRON_4_494 intron 44.554866 192.2747 44.554866 148.719834 96.63735 1.985145012 -0.222209 202 24 SH147 147 Arg1 3' flank 29.921396 124.195238 77.058317 1.88681952 -0.222272 100 81 SH13500 13500 MT COX1 intronic 22.31425 117.539015 22.31425 96.224765 59.2695075 1.772831318 -0.222456 141 48 SH15720 15720 YBR255C-A_2_727032_726576_INTRON_64_157 exon/intron 24.238304 133.531602 24.238304 110.293298 67.265801 1.827794318 -0.222532 130 95 SH20077 20077 YCR031C spliced 27.528483 120.190961 73.859722 1.868407669 -0.222594 205 30 SH5340 5340 snR30 snR30 551 567 26.123226 117.009656 71.566441 1.85470942 -0.222607 157 62 SH17628 17628 YJR094W-A_10_608000_608553_INTRON_3_277 intron 30.995627 156.006608 30.995627 126.010981 78.503304 1.894887935 -0.22264 206 29 SH16369 16369 YER003C_5_159117_157735_INTRON_32_124 5' exon 25.812218 141.089342 25.812218 116.277124 71.044671 1.851531507 -0.22277 112 15 SH8861 8861 LSR1 / U2 RNA U2 946 958 23.265524 104.464 63.864762 1.805261298 -0.222771 16 91 SH15741 15741 YCR028C-A_3_173432_172942_INTRON_243_325 intron 21.516427 109.974748 21.516427 89.458321 55.487374 1.744194172 -0.222864 34 97 SH9465 9465 RUF2 RUF2 166 183 28.515338 121.891092 75.203215 1.876236407 -0.222867 71 82 SH21603 21603 copy of SH6674 22.514092 97.970313 60.2422025 1.779900842 -0.222944 173 23 SH17903 17903 YLR061W_12_263195_263949_INTRON_13_401 intron 24.138764 132.896945 24.138764 109.758181 66.9484725 1.825740673 -0.222962 33 64 SH18945 18945 YOL127W_15_80347_81189_INTRON_14_427 intron 93.547534 323.932047 93.547534 231.384513 162.4660235 2.210762551 -0.222972 195 97 SH10078 10078 RUF6 RUF6 236 252 23.209352 103.992142 63.600747 1.803462217 -0.222977 147 74 SH17546 17546 YJL177W_10_90783_91654_INTRON_310_626 intron 22.845857 122.680117 22.845857 100.83426 61.8400585 1.791269892 -0.22308 2 13 SH15542 15542 YBR078W_2_393082_394818_INTRON_59_388 intron 45.832183 195.768268 45.832183 150.936085 98.384134 1.992925067 -0.223096 64 31 SH1700 1700 Leu6 tRNA 66 78 24.359086 111.049355 67.7042205 1.830615742 -0.223231 5 28 SH17869 17869 YLL050C_12_40413_39803_INTRON_15_193 intron 50.30239 207.680913 50.30239 158.378523 104.3404565 2.018452732 -0.223255 42 41 SH18497 18497 YMR194W_13_651144_651909_INTRON_17_479 intron 24.891418 137.974377 24.891418 114.082959 69.4871885 1.84190474 -0.223259 82 99 SH12433 12433 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 21.643361 111.210705 21.643361 90.567344 56.1053525 1.749004295 -0.223292 114 15 SH20143 20143 YDL108W spliced 1323.808179 2120.531086 1722.169633 3.236075927 -0.223295 106 15 SH21930 21930 copy of SH21370 37.774351 137.468914 87.6216325 1.94261134 -0.223433 4 24 SH17505 17505 YJL136C_10_156971_156248_INTRON_25_484 intron 36.054714 169.648299 36.054714 134.593585 85.3241495 1.931071968 -0.223972 8 54 SH18377 18377 YMR116C_13_500687_499455_INTRON_538_810 exon/intron 29.709237 152.660618 29.709237 123.951381 76.830309 1.88553258 -0.224021 124 65 SH16108 16108 YDR064W_4_579453_580447_INTRON_22_560 intron 24.998546 138.390132 24.998546 114.391586 69.695066 1.843202034 -0.224048 19 51 SH14706 14706 MT tRNA thr2 tRNA / 3' 22.733795 121.707998 22.733795 99.974203 61.353999 1.787842875 -0.224125 207 47 SH19520 19520 ACT1 26.591561 118.223292 72.4074265 1.859783112 -0.224251 16 34 SH1867 1867 Leu9 tRNA 76 90 24.730178 113.285764 69.007971 1.838899258 -0.224288 193 52 SH19024 19024 YOR182C_15_678792_678190_INTRON_4_414 intron 23.923008 131.557419 23.923008 108.634411 66.2787095 1.821374044 -0.224308 166 16 SH2991 2991 Ser2 5' flank 21.871638 92.610271 57.2409545 1.757706867 -0.224369 138 39 SH3460 3460 Trp1 3' flank 38.10878 138.105247 88.1070135 1.945010481 -0.224395 68 37 SH17319 17319 YIL004C_9_348502_347943_INTRON_12_142 5' exon 42.121005 185.967333 42.121005 144.846328 93.4836665 1.970735737 -0.224455 134 50 SH13292 13292 MT COX1 COX1-ai5a 23.925286 131.585937 23.925286 108.660651 66.2929685 1.821467467 -0.224463 176 91 SH1767 1767 Leu7 3' flank 22.136904 94.903682 58.520293 1.767306492 -0.224491 103 79 SH20584 20584 YHR016C spliced 22.14833 95.006626 58.577478 1.76773067 -0.224532 71 74 SH13566 13566 MT COX1 Exon 6 24.057249 132.48257 24.057249 109.425321 66.741285 1.824394564 -0.22454 186 20 SH19788 19788 Negative Control 33.123119 129.629517 81.376318 1.910498036 -0.224585 147 32 SH6908 6908 snR58 5' 23.539895 106.464697 65.002296 1.812928697 -0.224601 185 93 SH590 590 Gln1 5' flank - tRNA8 5' flank 8 32.815515 129.133337 80.974426 1.908347878 -0.224606 64 44 SH3013 3013 Ser2 tRNA 26 45 23.057613 102.84677 62.9521915 1.799010853 -0.224714 24 91 SH15084 15084 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.694593 121.400338 22.694593 99.705745 61.200169 1.786752621 -0.224802 60 93 SH12335 12335 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 24.891189 138.078655 24.891189 114.187466 69.5393275 1.842230486 -0.224993 141 62 SH4531 4531 U3b (snR17b) U3b 211 226 37.000215 136.252296 86.6262555 1.937649542 -0.225022 66 44 SH14251 14251 MT tRNA Ser 3' 23.160845 125.961133 23.160845 103.800288 63.4805665 1.802640794 -0.225175 93 40 SH1193 1193 Ile1 5' flank 23.887121 108.514698 66.2009095 1.820863956 -0.225321 47 92 SH17795 17795 YKL186C_11_93537_92746_INTRON_71_233 intron 33.82207 163.674201 33.82207 130.852131 82.3371005 1.915595569 -0.225339 55 88 SH17242 17242 YHR079C-A_8_262554_262193_INTRON_114_199 intron/exon 25.778158 141.133117 25.778158 116.354959 71.0665585 1.851665285 -0.225353 201 39 SH18358 18358 YMR033W_13_337787_339276_INTRON_31_116 intron 26.755462 144.437279 26.755462 118.681817 72.7186395 1.861645745 -0.22539 175 57 SH15841 15841 YDL075W_4_322225_322987_INTRON_58_478 intron 24.512943 135.640143 24.512943 112.1272 68.3200715 1.834548312 -0.2254 12 23 SH15483 15483 YBL092W_2_45639_46364_INTRON_1_333 exon/intron 25.479378 140.125909 25.479378 115.646531 70.5629545 1.848576757 -0.225523 65 4 SH14770 14770 MT ORF11; tRNA Leu; tRNA Gln tRNA Leu 52.98544 215.00894 52.98544 163.0235 108.00447 2.03344173 -0.225596 173 16 SH5528 5528 snR33 5' 26.217427 117.425408 71.8214175 1.856253972 -0.225684 26 97 SH14514 14514 MT 21S rRNA 21S rRNA3 36.892402 172.011793 36.892402 136.119391 86.5058965 1.937045711 -0.225752 163 83 SH13445 13445 MT COX1 intronic 49.708767 206.300172 49.708767 157.591405 103.650086 2.015569667 -0.225773 96 19 SH1598 1598 Leu4 3' flank 23.985658 109.122837 66.5542475 1.823175777 -0.225813 48 14 SH19004 19004 YOR122C_15_552886_552297_INTRON_14_222 3' exon 22.398686 118.674404 22.398686 97.275718 59.837202 1.776971278 -0.225828 115 91 SH3750 3750 Val4 5' flank 25.753563 116.328836 71.0411995 1.851510286 -0.225886 74 39 SH18472 18472 YMR143W_13_551927_552902_INTRON_25_568 intron 23.510352 128.913959 23.510352 106.403607 64.9569795 1.812625822 -0.225893 132 60 SH21775 21775 copy of SH14039 23.331483 105.388617 64.36005 1.808616373 -0.225979 13 52 SH15105 15105 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF2 exon2 23.026321 124.738549 23.026321 102.712228 62.8692745 1.798438449 -0.226033 107 91 SH42 42 Ala1 3' flank 23.076355 103.153652 63.1150035 1.800132611 -0.226066 211 6 SH999 999 Gly2 5' flank - tRNA3 3 25.899194 116.68943 71.294312 1.853054882 -0.22607 203 95 SH17437 17437 YIL133C_9_99416_98527_INTRON_32_321 intron 206.878261 625.852415 206.878261 419.974154 313.4262075 2.496135308 -0.226349 32 51 SH11369 11369 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3731 3746 21923.24841 25092.49142 23507.86991 4.371213279 -0.226391 115 34 SH18383 18383 YMR116C_13_500687_499455_INTRON_538_810 intron 22.469331 119.405011 22.469331 97.93568 60.2025055 1.779614566 -0.226402 171 81 SH15855 15855 YDL079C_4_314747_312950_INTRON_413_704 5' exon 24.370561 134.766029 24.370561 111.395468 67.8830145 1.83176112 -0.226439 12 71 SH13300 13300 MT COX1 COX1-ai5a 25.119779 138.952596 25.119779 114.832817 69.976298 1.844950963 -0.226455 170 31 SH14186 14186 MT COB Exon6 39.600862 179.360381 39.600862 140.759519 90.1801905 1.955111148 -0.226455 81 98 SH13776 13776 MT COB intronic 21.79527 112.96181 21.79527 92.16654 56.980905 1.755729343 -0.226527 147 71 SH6574 6574 snR47 5' 24.727846 113.487362 69.107604 1.839525836 -0.226706 67 82 SH6184 6184 snR40 5' 26.068701 117.136086 71.6023935 1.85492754 -0.226734 142 28 SH19663 19663 SIR1 2.2 23.470184 106.253411 64.8617975 1.81198898 -0.226847 116 96 SH20344 20344 YER093C-A spliced 28.711189 122.458887 75.585038 1.878435836 -0.226886 19 101 SH4327 4327 telomerase RNA telomerase 671 690 605.363553 1058.878928 832.1212405 2.920186608 -0.227077 79 64 SH16201 16201 YDR381C-A_4_1238839_1238301_INTRON_27_220 intron 595.548741 1638.31422 595.548741 1043.765479 819.65711 2.91363221 -0.227093 75 69 SH340 340 Arg5 tRNA 36 53 46.243012 151.94487 99.093941 1.996047101 -0.227094 125 19 SH12041 12041 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7091 7108 198.600617 406.576162 302.5883895 2.48085226 -0.227106 44 28 SH12820 12820 MT COX1 COX1ai1 27.687065 147.414986 27.687065 120.727921 74.207493 1.87044776 -0.22712 174 61 SH9772 9772 RUF4 RUF4 636 653 24.194083 110.43914 67.3166115 1.828122247 -0.227157 114 40 SH20225 20225 YDR129C spliced 24.339036 111.294965 67.8170005 1.831338577 -0.227374 189 70 SH6054 6054 snR37 snR37 186 202 61.353578 177.204883 119.2792305 2.076564829 -0.227423 194 46 SH14359 14359 MT ORF9 and ORF10 (hypothetical) ORF9 24.164005 133.454196 24.164005 110.290191 67.227098 1.827544364 -0.227441 157 65 SH18042 18042 YLR333C_12_796335_795573_INTRON_1_423 intron 24.61035 136.487691 24.61035 112.877341 68.7438455 1.837233823 -0.227509 4 37 SH20411 20411 YFR032C-A spliced 47.867174 154.695611 101.2813925 2.005529664 -0.227624 112 23 SH19783 19783 Negative Control 21.892623 93.114073 57.503348 1.759693131 -0.227705 140 13 SH3957 3957 RNase MRP RNaseMRP 201 216 24.615426 112.926463 68.7709445 1.837404989 -0.227732 70 22 SH18145 18145 YLR406C_12_931752_931062_INTRON_58_406 intron 20.674126 102.850189 20.674126 83.176063 51.9250945 1.715377296 -0.227813 207 25 SH15354 15354 YBL026W_2_170585_171000_INTRON_55_182 intron 22.619776 121.005608 22.619776 99.385832 61.002804 1.785349798 -0.227979 155 5 SH11884 11884 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6306 6321 162.195107 346.611315 254.403211 2.405522589 -0.228134 15 43 SH13912 13912 MT COB Cytbi3 21.116485 106.75693 21.116485 86.640445 53.878465 1.731415214 -0.228157 69 41 SH20418 20418 YGL030W spliced 28.095027 121.502211 74.798619 1.87389358 -0.228391 4 2 SH15802 15802 YDL061C_4_341182_340627_INTRON_1_408 intron 22.616147 121.013597 22.616147 99.39745 61.0067985 1.785378235 -0.228399 46 93 SH10058 10058 RUF6 RUF6 136 158 30.083183 124.846201 77.464692 1.889103798 -0.228678 107 86 SH6743 6743 snR49 3' 23.393887 105.982522 64.6882045 1.810825097 -0.228839 86 99 SH12119 12119 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7481 7499 27.150492 119.831898 73.491195 1.866235309 -0.22888 118 44 SH15241 15241 MT tRNA fMet 5' 21.776747 113.024964 21.776747 92.248217 57.012482 1.755969948 -0.229014 79 93 SH1233 1233 Ile1 3' flank 24.128114 110.220497 67.1743055 1.827203185 -0.22903 14 26 SH3749 3749 Val4 5' flank 24.940371 114.563781 69.752076 1.843557138 -0.229215 26 51 SH13020 13020 MT COX1 COX1ai2 24.848161 138.190489 24.848161 114.342328 69.5952445 1.842579565 -0.229279 179 47 SH10534 10534 RUF8 RUF8 596 615 22.944932 102.343771 62.6443515 1.796881918 -0.229296 214 4 SH21707 21707 copy of SH11082 10640.81034 13312.51316 11976.66175 4.078335784 -0.229395 201 91 SH20462 20462 YGL183C spliced 48.19563 155.391897 101.7937635 2.007721171 -0.229517 6 27 SH9730 9730 RUF4 RUF4 426 442 23.947162 109.225787 66.5864745 1.823386021 -0.229602 71 23 SH8376 8376 snoRNA cluster 5 5' 22.707719 122.021388 22.707719 100.313669 61.510694 1.788950627 -0.229622 30 56 SH12138 12138 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7576 7594 22.651683 99.830792 61.2412375 1.787043958 -0.22964 49 5 SH3585 3585 Val1 5' flank 23.327638 105.682186 64.504912 1.809592787 -0.22979 65 88 SH2935 2935 Ser1 5' flank 23.046509 103.293163 63.169836 1.800509749 -0.229856 29 46 SH5896 5896 snR36 5' 22.619716 99.586311 61.1030135 1.786062629 -0.229948 155 68 SH1258 1258 Ile2 5' flank - tRNA2 2 22.582149 99.27533 60.9287395 1.784822193 -0.230075 203 84 SH17447 17447 YIL148W_9_68708_69528_INTRON_9_442 exon/intron 24.522054 136.123301 24.522054 112.601247 68.5616505 1.836081264 -0.230178 5 59 SH601 601 Gln1 tRNA 46 60 31.136506 126.7198 78.928153 1.89723194 -0.230282 54 25 SH19218 19218 YPL081W_16_404945_406039_INTRON_8_508 intron 22.436906 119.49648 22.436906 98.059574 60.24824 1.779944365 -0.230393 54 17 SH2724 2724 Pro5 tRNA 1 13 1101.787927 1807.04967 1454.418799 3.162689479 -0.230473 102 42 SH18718 18718 YNL130C_14_381156_379555_INTRON_30_470 intron 24.053372 132.975132 24.053372 109.92176 66.987566 1.825994198 -0.230569 143 36 SH19092 19092 YOR312C_15_901173_900242_INTRON_2_427 intron 27.211563 146.300158 27.211563 120.088595 73.650079 1.867173217 -0.230661 38 44 SH20757 20757 YJR094W-A spliced 57.165931 170.477025 113.821478 2.056224221 -0.23071 75 104 SH15480 15480 YBL091C-A_2_46858_46559_INTRON_35_122 3' exon 23.516561 129.362111 23.516561 106.84555 65.1810555 1.814121389 -0.23075 4 48 SH12113 12113 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7451 7469 5261.556395 7179.345038 6220.450717 3.793821854 -0.230814 175 53 SH1659 1659 Leu5 3' flank 22.653927 99.980587 61.317257 1.787582719 -0.230912 10 103 SH15320 15320 YAL003W_1_142172_143158_INTRON_81_446 intron 32.912434 161.603238 32.912434 129.690804 81.301619 1.910099194 -0.230924 187 100 SH11557 11557 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4671 4684 13595.32188 16530.97042 15063.14615 4.17791569 -0.231064 19 85 SH9160 9160 snR7 U5 RNA U5 71 88 30.336611 125.426024 77.8813175 1.89143329 -0.23123 47 49 SH12299 12299 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 25.808041 141.600013 25.808041 116.791972 71.3000065 1.853089569 -0.231255 84 86 SH21618 21618 copy of SH7319 22.054206 94.859426 58.456816 1.766835157 -0.231267 90 53 SH2816 2816 Pro6 3' flank 21.991683 94.319165 58.155424 1.764590226 -0.231285 90 7 SH3443 3443 Trp1 tRNA 46 62 34.072866 131.687267 82.8800665 1.918450091 -0.23135 19 84 SH201 201 Arg2 3' flank 36.496174 135.839248 86.167711 1.935344556 -0.231354 10 101 SH10721 10721 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 491 512 28.753362 122.796812 75.775087 1.879526444 -0.231387 22 26 SH17567 17567 YJL189W_10_75932_76473_INTRON_7_392 intron 22.125869 116.621149 22.125869 95.49528 58.8105745 1.769455422 -0.231393 94 29 SH19781 19781 Negative Control 26.785053 119.131272 72.9581625 1.863073887 -0.231404 137 75 SH18211 18211 YML025C_13_225365_224406_INTRON_28_126 5' exon 29.962479 153.777746 29.962479 124.815267 77.388873 1.888678522 -0.231451 55 90 SH20988 20988 YML067C spliced 29.150889 123.475971 76.31343 1.882600974 -0.231575 96 70 SH17734 17734 YKL156W_11_158616_159214_INTRON_4_353 intron 44.214413 192.112577 44.214413 148.898164 96.5562885 1.984780564 -0.231812 26 44 SH17315 17315 YHR203C_8_505526_504472_INTRON_15_283 intron 23.08746 125.956772 23.08746 103.869312 63.478386 1.802625876 -0.231886 205 80 SH2915 2915 Pro8 96-105 + 3' flank 96 29.163762 123.520032 76.341897 1.882762947 -0.231952 172 62 SH17709 17709 YKL081W_11_282533_284097_INTRON_206_531 intron 32.257887 159.948855 32.257887 128.690968 80.4744275 1.905657896 -0.232027 162 23 SH12562 12562 MT_15S MT_15S 22.265967 118.031329 22.265967 96.765362 59.5156645 1.774631287 -0.232055 166 90 SH14872 14872 MT tRNA Ser2; tRNA Arg2 3' 27.938612 148.388234 27.938612 121.449622 74.694117 1.873286398 -0.232057 111 69 SH5141 5141 snR11 3' 23.828237 108.753978 66.2911075 1.821455275 -0.232105 74 88 SH18123 18123 YLR388W_12_898158_898821_INTRON_1_488 intron 30.363167 154.889126 30.363167 125.525959 77.944563 1.891785826 -0.23212 155 67 SH9800 9800 RUF4 776-788 + 3' 776 24.656915 113.588339 69.122627 1.839620235 -0.232467 199 10 SH17805 17805 YKL190W_11_82949_83552_INTRON_53_128 intron/exon 41.823619 185.775517 41.823619 144.951898 93.3877585 1.970289952 -0.232592 177 78 SH11983 11983 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6801 6818 109.923111 260.481801 185.202456 2.267646742 -0.232664 105 89 SH17089 17089 YHL001W_8_104270_105084_INTRON_130_527 intron 23.197313 127.143938 23.197313 104.946625 64.071969 1.806668071 -0.232874 98 2 SH10064 10064 RUF6 RUF6 166 185 26.775329 119.20587 72.9905995 1.863266931 -0.232947 84 82 SH4414 4414 telomerase RNA telomerase 1106 1122 23.963027 109.608317 66.785672 1.8246833 -0.232991 185 83 SH17343 17343 YIL018W_9_316766_317930_INTRON_5_404 intron 24.342818 135.179055 24.342818 111.836237 68.0895275 1.83308032 -0.233307 179 14 SH7769 7769 snoRNA cluster1 snR76 23.030187 125.558765 23.030187 103.528578 63.2793825 1.801262233 -0.233429 193 17 SH10952 10952 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1646 1664 15713.16034 18806.33861 17259.74948 4.237034488 -0.233545 163 81 SH9390 9390 RUF1 RUF1 526 545 49.731504 158.282291 104.0068975 2.017062142 -0.233552 210 63 SH4576 4576 U3b (snR17b) U3b 436 450 198.313076 407.760624 303.03685 2.481495443 -0.233624 185 20 SH10086 10086 RUF6 RUF6 276 294 23.387537 106.349116 64.8683265 1.812032694 -0.233677 143 71 SH19224 19224 YPL090C_16_378390_377286_INTRON_7_400 exon/intron 22.4161 119.632195 22.4161 98.216095 60.3160975 1.780433235 -0.23372 161 31 SH7493 7493 snR71 81-90 + 3' 81 22.659131 100.315865 61.487498 1.788786821 -0.233736 175 50 SH17127 17127 YHR010W_8_126513_127484_INTRON_32_592 intron 24.768092 138.118711 24.768092 114.350619 69.5593555 1.842355549 -0.233745 162 43 SH3146 3146 Ser4 3' flank 22.359015 97.734845 60.04693 1.778490808 -0.233805 4 44 SH15488 15488 YBL092W_2_45639_46364_INTRON_1_333 intron 27.478615 147.241172 27.478615 120.762557 74.120586 1.869938844 -0.233888 200 34 SH15051 15051 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 24.391111 135.563275 24.391111 112.172164 68.2816375 1.834303928 -0.233937 155 31 SH18489 18489 YMR194W_13_651144_651909_INTRON_17_479 intron 42.117887 186.670618 42.117887 145.552731 93.835309 1.972366288 -0.233943 193 42 SH13159 13159 MT COX1 intronic 24.094238 133.545572 24.094238 110.451334 67.272786 1.827839414 -0.23396 201 86 SH21808 21808 copy of SH15283 30.727104 126.260975 78.4940395 1.89483668 -0.234016 112 16 SH9289 9289 RUF1 RUF1 21 38 21.256837 88.333251 54.795044 1.73874128 -0.234187 187 3 SH20892 20892 YLR287C-A spliced 31.131906 126.95953 79.045718 1.897878349 -0.234269 84 10 SH14550 14550 MT 21S rRNA 21S rRNA3 21.841222 114.153292 21.841222 93.31207 57.576646 1.760246362 -0.234271 107 33 SH1404 1404 Leu1 tRNA 91 108 21.286905 88.61622 54.9515625 1.739980046 -0.234517 135 11 SH2332 2332 Phe3 5' flank - tRNA5 5 24.201291 111.136039 67.668665 1.830387609 -0.234695 172 77 SH18099 18099 YLR367W_12_855877_857316_INTRON_698_1180 intron 118.866725 393.638633 118.866725 275.771908 197.3193165 2.295169602 -0.23473 124 102 SH209 209 Arg3 5' flank 28.365684 122.346289 75.3559865 1.87711776 -0.234876 61 17 SH1378 1378 Leu1 5' flank 23.186602 105.067626 64.127114 1.807041695 -0.23488 169 86 SH13673 13673 MT ATP6 3' 22.126139 116.972813 22.126139 95.846674 58.9864065 1.770751939 -0.23488 157 68 SH9790 9790 RUF4 RUF4 726 745 91.886992 230.147433 161.0172125 2.206872304 -0.234974 118 81 SH20755 20755 YJR094W-A spliced 43.596914 148.120203 95.8585585 1.981630894 -0.235024 2 102 SH3775 3775 Val4 3' flank 28.071236 121.863244 74.96724 1.874871522 -0.23522 136 89 SH5497 5497 snR32 snR32 146 165 21.010093 86.427768 53.7189305 1.730127358 -0.235289 36 74 SH17026 17026 YGR148C_7_788173_787307_INTRON_1_392 3' exon 71.63123 266.092515 71.63123 195.461285 133.5462575 2.125631722 -0.235295 84 41 SH10845 10845 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1111 1128 725.839254 1249.476857 987.6580555 2.99460661 -0.235341 92 52 SH1232 1232 Ile1 3' flank 23.989536 109.965664 66.9776 1.825929581 -0.235358 189 89 SH7792 7792 snoRNA cluster1 snR75 35.101844 167.847848 35.101844 133.746004 84.423924 1.926465534 -0.235466 64 93 SH18828 18828 YNL302C_14_62942_61957_INTRON_21_571 intron 36.251463 170.970363 36.251463 135.7189 85.9851815 1.934423612 -0.235633 38 27 SH17235 17235 YHR077C_8_255757_252375_INTRON_7_119 3' exon 25.497882 140.815356 25.497882 116.317474 70.907678 1.850693264 -0.235694 137 15 SH20158 20158 YDL130W spliced 24.569695 113.373323 68.971509 1.838669728 -0.235761 6 87 SH13291 13291 MT COX1 COX1-ai5a 23.820991 131.850745 23.820991 109.029754 66.4253725 1.822333999 -0.235822 86 33 SH13064 13064 MT COX1 intronic 24.372144 135.608704 24.372144 112.23656 68.304352 1.834448376 -0.235921 63 93 SH1617 1617 Leu5 5' flank 25.163783 115.52508 70.3444315 1.847229724 -0.236026 163 90 SH15905 15905 YDL083C_4_307788_306925_INTRON_25_456 intron 1116.17434 2950.269433 1116.17434 1835.095093 1475.634717 3.168978864 -0.236201 177 45 SH18171 18171 YLR448W_12_1028848_1029762_INTRON_16_399 intron 22.932487 124.895479 22.932487 102.962992 62.9477395 1.798980139 -0.236212 130 58 SH583 583 Gln1 5' flank 24.836236 114.735726 69.785981 1.843768188 -0.236231 35 42 SH6363 6363 snR43 snR43 56 73 53.115108 164.168406 108.641757 2.035996781 -0.236323 144 71 SH7006 7006 snR60 3' 24.557123 113.359824 68.9584735 1.838587639 -0.236433 7 95 SH43 43 Ala1 3' flank 26.371361 118.46849 72.4199255 1.859858074 -0.236482 94 95 SH14964 14964 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " 5' 25.829953 142.004665 25.829953 117.174712 71.5023325 1.854320209 -0.236569 95 60 SH2197 2197 Met2 3' flank 23.42285 106.796541 65.1096955 1.813645664 -0.236597 102 83 SH7365 7365 snR68 snR68 46 62 21.999321 94.919854 58.4595875 1.766855747 -0.236683 151 97 SH1899 1899 Lys1 5' flank 27.270142 120.564919 73.9175305 1.868747449 -0.236723 53 45 SH5785 5785 snR35 snR35 111 131 30.364428 125.825533 78.0949805 1.892623121 -0.236956 59 22 SH20960 20960 YML025C spliced 21.895846 94.05126 57.973553 1.763229918 -0.236993 44 10 SH8305 8305 snoRNA cluster4 intergenic 30.777404 156.308976 30.777404 126.531572 78.654488 1.895723508 -0.237013 55 91 SH18573 18573 YNL012W_14_609682_611661_INTRON_106_189 3' exon 28.987781 151.520902 28.987781 123.533121 76.260451 1.882299369 -0.237117 6 61 SH16297 16297 YDR450W_4_1359912_1360787_INTRON_48_482 intron 22.370027 119.550292 22.370027 98.180265 60.275146 1.780138271 -0.237296 134 31 SH10236 10236 RUF6 RUF6 1026 1042 23.943088 109.871955 66.9075215 1.825474942 -0.237394 211 64 SH8350 8350 snoRNA cluster4 snR53/3' 26.18899 143.286849 26.18899 118.097859 72.1434245 1.858196754 -0.237528 149 25 SH13267 13267 MT COX1 cox1ai4/intronic 25.025333 139.305531 25.025333 115.280198 70.1527655 1.846044796 -0.237553 187 34 SH14805 14805 "MT tRNAs (Lys, Arg1, Gly)" intergenic 24.327234 135.454897 24.327234 112.127663 68.2274485 1.83395913 -0.237655 109 100 SH2938 2938 Ser1 5' flank 22.364169 98.170651 60.26741 1.780082528 -0.237701 14 80 SH21113 21113 YNL096C spliced 24.479239 113.026945 68.753092 1.837292234 -0.237802 6 94 SH19825 19825 Negative Control 30.157737 125.532729 77.845233 1.891232023 -0.237947 3 61 SH20819 20819 YKL190W spliced 22.596047 100.205823 61.400935 1.788174985 -0.237993 126 21 SH17937 17937 YLR093C_12_327416_326514_INTRON_17_157 intron 26.7559 145.238407 26.7559 119.482507 73.1192035 1.864031452 -0.238041 169 37 SH16086 16086 YDR025W_4_491510_492319_INTRON_46_384 intron 22.736366 123.196797 22.736366 101.460431 62.0983985 1.7930804 -0.238293 75 83 SH15329 15329 YAL003W_1_142172_143158_INTRON_81_446 intron 22.530027 121.198111 22.530027 99.668084 61.0990555 1.786034497 -0.238339 35 77 SH19922 19922 YAL030W spliced 23.45968 107.163816 65.311748 1.814991307 -0.238442 56 34 SH19619 19619 RNA14 1.1 23.689139 108.500389 66.094764 1.820167056 -0.23856 193 76 SH20667 20667 YIL069C spliced 25.396475 116.25974 70.8281075 1.850205638 -0.23875 82 47 SH21211 21211 YOR096W spliced 27.453672 121.012766 74.233219 1.870598293 -0.238911 10 80 SH2643 2643 Pro3 3' flank 31.111008 127.219938 79.165473 1.898535811 -0.239021 23 40 SH16494 16494 YER117W_5_396765_397649_INTRON_43_513 intron 36.267302 171.247343 36.267302 135.980041 86.1236715 1.935122536 -0.239061 183 69 SH15204 15204 MT COX3 cox3 23.82285 132.177711 23.82285 109.354861 66.5888555 1.82340155 -0.239491 208 63 SH17413 17413 YIL106W_9_166412_167441_INTRON_21_105 intron 24.032302 133.61851 24.032302 110.586208 67.309255 1.828074784 -0.239661 114 85 SH13313 13313 MT COX1 COX1-ai5a 22.867223 124.6234 22.867223 102.756177 62.8117 1.798040548 -0.239697 191 99 SH2829 2829 Pro7 5' flank 29.378891 124.381646 76.8802685 1.885814891 -0.240325 2 32 SH1368 1368 Leu1 5' flank 40.939285 144.020915 92.4801 1.966048291 -0.24041 46 59 SH16420 16420 YER056C-A_5_270183_269421_INTRON_38_434 3' exon 23.997689 133.451108 23.997689 110.453419 67.225554 1.82753439 -0.240452 88 4 SH14095 14095 MT COB Cytbi4 21.820582 114.568149 21.820582 93.747567 57.7840745 1.761808162 -0.240546 38 53 SH9121 9121 snR14 / U4 RNA 3' 101.296916 247.099714 174.198315 2.24104395 -0.240735 45 4 SH3211 3211 Thr1 5' flank 29.748299 125.026446 77.3873725 1.888670101 -0.240809 208 81 SH7459 7459 snR71 5' 26.270892 118.522309 72.3966005 1.859718174 -0.24116 155 90 SH13766 13766 MT COB intronic 25.644797 141.659437 25.644797 117.01464 71.3297185 1.85327051 -0.241198 91 9 SH19352 19352 YPL249C-A_16_76239_75699_INTRON_17_254 intron 24.001863 133.548396 24.001863 110.546533 67.274198 1.827848529 -0.241245 52 100 SH14763 14763 MT ORF11; tRNA Leu; tRNA Gln ORF11 22.593331 122.131729 22.593331 100.538398 61.5658645 1.789339982 -0.241453 14 16 SH1672 1672 Leu6 5' flank 23.433881 107.273817 65.353849 1.81527117 -0.241522 209 25 SH21490 21490 copy of SH2038 51.901681 162.614043 107.257862 2.030429136 -0.241576 18 9 SH7404 7404 snR69 5' 25.777602 117.402043 71.5898225 1.854851286 -0.242252 38 14 SH14606 14606 MT 21S rRNA Sce1 endonuc 31.30904 158.067739 31.30904 127.758699 79.5338695 1.900552112 -0.242312 117 31 SH7307 7307 snR66 snR66 26 40 23.516126 107.825733 65.6709295 1.817373163 -0.242419 23 32 SH14340 14340 MT VAR1 includes 5’ processing site VAR1 22.732128 123.590343 22.732128 101.858215 62.2951715 1.794454386 -0.242463 86 30 SH7946 7946 snoRNA cluster1 3' 28.448005 150.395406 28.448005 122.947401 75.697703 1.879082701 -0.242645 19 21 SH11543 11543 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4601 4617 16187.83471 19421.0165 17804.4256 4.250527967 -0.242724 68 16 SH16727 16727 YGL033W_7_435621_436347_INTRON_56_125 3' exon 23.155867 127.802809 23.155867 105.646942 64.4014045 1.808895339 -0.242774 65 46 SH18934 18934 YOL121C_15_92849_92025_INTRON_21_410 intron 23.179598 128.055694 23.179598 105.876096 64.527847 1.809747175 -0.242929 127 78 SH6870 6870 snR56 5' 22.021821 95.743797 58.882809 1.76998852 -0.242972 51 64 SH11440 11440 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4086 4101 11932.60955 14854.42116 13393.51535 4.12689458 -0.243004 48 71 SH13543 13543 MT COX1 intronic 35.394826 169.155608 35.394826 134.760782 85.077804 1.929816272 -0.243025 88 34 SH17040 17040 YGR183C_7_859471_859058_INTRON_4_216 intron 24.526706 137.299196 24.526706 113.77249 69.149598 1.83978966 -0.243061 174 12 SH5946 5946 snR36 snR36 186 208 24.696837 114.78272 69.7397785 1.843480564 -0.243193 105 30 SH5773 5773 snR35 snR35 51 67 23.28972 106.58172 64.93572 1.81248366 -0.243213 52 42 SH2817 2817 Pro6 3' flank 22.274462 97.952863 60.1136625 1.778973189 -0.243215 19 72 SH15133 15133 MT tRNA Phe 3' 22.724041 123.591516 22.724041 101.867475 62.295758 1.794458475 -0.243232 171 75 SH9774 9774 RUF4 RUF4 646 663 50.553173 160.497455 105.525314 2.023356653 -0.243295 126 80 SH3017 3017 Ser2 tRNA 46 58 23.882479 110.032209 66.957344 1.825798218 -0.243334 183 44 SH4876 4876 snR8 snR8 161 175 36.503931 136.683963 86.593947 1.937487535 -0.243484 106 71 SH481 481 Asp2 5' flank 22.384273 98.931977 60.658125 1.782888982 -0.243514 199 44 SH18518 18518 YMR201C_13_667043_665844_INTRON_28_111 3' exon 46.863146 200.175292 46.863146 154.312146 100.587646 2.002544645 -0.243592 38 8 SH16923 16923 YGL251C_7_31636_27921_INTRON_59_210 3' exon 22.524751 121.686392 22.524751 100.161641 61.343196 1.787766399 -0.243601 70 33 SH16499 16499 YER117W_5_396765_397649_INTRON_43_513 intron 22.913142 125.48982 22.913142 103.576678 63.24491 1.801025579 -0.243617 20 54 SH2016 2016 Lys3 tRNA-exon/intron 26 41 22.326139 98.452785 60.389462 1.780961161 -0.24375 161 54 SH10624 10624 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 6 28 22.349719 98.665094 60.5074065 1.781808538 -0.243833 55 87 SH5672 5672 snR34 snR34 281 298 25.927483 117.864148 71.8958155 1.856703614 -0.243847 146 94 SH11798 11798 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5876 5893 32477.05604 35864.85069 34170.95336 4.533657096 -0.243863 56 42 SH6042 6042 snR37 snR37 126 145 23.634547 108.639277 66.136912 1.820443913 -0.243907 166 24 SH17329 17329 YIL004C_9_348502_347943_INTRON_12_142 3' exon 22.081425 117.459668 22.081425 96.378243 59.229834 1.772540515 -0.24407 173 92 SH13676 13676 MT ATP6 3' 29.766266 154.028142 29.766266 125.261876 77.514071 1.889380546 -0.244207 2 86 SH2958 2958 Ser1 tRNA 21 38 62.079287 180.088854 121.0840705 2.083087012 -0.244274 126 76 SH11469 11469 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4231 4246 2776.295625 4136.080023 3456.187824 3.538597336 -0.244573 169 101 SH9851 9851 RUF5-1 RUF5-1 61 78 23.36691 107.149945 65.2584275 1.814636605 -0.24466 106 69 SH20061 20061 YBR255C-A spliced 22.506199 100.117217 61.311708 1.787543415 -0.244743 176 52 SH13875 13875 MT COB intronic 22.689436 123.414113 22.689436 101.724677 62.2070565 1.793839652 -0.244776 18 63 SH1597 1597 Leu4 3' flank 26.392411 119.045914 72.7191625 1.861648869 -0.244843 94 28 SH4363 4363 telomerase RNA telomerase 851 867 22.631939 101.24958 61.9407595 1.791976526 -0.245061 185 54 SH20247 20247 YDR381C-A spliced 22.900098 103.622249 63.2611735 1.801137244 -0.245134 5 42 SH10263 10263 RUF7 5' 26.195744 118.600787 72.3982655 1.859728162 -0.245276 57 28 SH4089 4089 SRP RNA SRP RNA 336 348 21.767598 93.754398 57.760998 1.761634688 -0.245306 197 61 SH14793 14793 "MT tRNAs (Lys, Arg1, Gly)" 5' 24.07833 134.429962 24.07833 111.351632 67.714981 1.830684761 -0.24537 214 78 SH5236 5236 snR30 snR30 31 45 1961.297182 3050.020737 2505.65896 3.39892196 -0.245514 67 80 SH8292 8292 snoRNA cluster4 intergenic 37.30192 174.522976 37.30192 138.221056 87.761488 1.943303978 -0.245738 112 30 SH5306 5306 snR30 snR30 381 401 20.911201 86.563888 53.7375445 1.730277818 -0.245785 83 80 SH12316 12316 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 29.639632 153.787511 29.639632 125.147879 77.3937555 1.888705921 -0.245807 195 93 SH8696 8696 LSR1 / U2 RNA U2 121 140 41.686971 145.712688 93.6998295 1.971738801 -0.245834 105 98 SH19256 19256 YPL143W_16_282121_282969_INTRON_20_544 5' exon 36.973415 173.640712 36.973415 137.667297 87.320356 1.941115498 -0.245991 192 35 SH492 492 Asp2 tRNA 21 35 907.695139 1535.118247 1221.406693 3.086860295 -0.246267 86 71 SH3200 3200 Ser5 3' flank 22.751006 102.431914 62.59146 1.796515082 -0.246352 32 37 SH16558 16558 YER133W_5_432491_433954_INTRON_178_702 intron 28.971816 152.045844 28.971816 124.074028 76.522922 1.883791545 -0.246604 167 57 SH9557 9557 RUF3 RUF3 171 187 1111.200151 1840.301408 1475.75078 3.169013021 -0.246604 201 67 SH14231 14231 MT ATP9 3' 25.502889 141.521821 25.502889 117.018932 71.2609105 1.852851367 -0.246825 134 98 SH15964 15964 YDL130W_4_229906_230527_INTRON_115_415 intron 22.178082 118.669875 22.178082 97.491793 59.8349375 1.776954842 -0.246902 94 99 SH1239 1239 Ile1 3' flank 29.40095 124.815862 77.108406 1.887101725 -0.246919 151 95 SH4348 4348 telomerase RNA telomerase 776 793 35.854617 135.815478 85.8350475 1.933664652 -0.24693 118 18 SH17460 17460 YIL148W_9_68708_69528_INTRON_9_442 intron 22.638609 123.158911 22.638609 101.520302 62.0794555 1.792947899 -0.247101 56 82 SH4346 4346 telomerase RNA telomerase 766 785 24.461902 113.753508 69.107705 1.839526471 -0.24711 181 102 SH11169 11169 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 2731 2746 1470.629626 2366.349083 1918.489355 3.282959394 -0.24723 78 17 SH2790 2790 Pro6 tRNA-intron 41 57 23.85565 110.270103 67.0628765 1.826482178 -0.247898 156 44 SH11332 11332 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3546 3566 35.471446 135.224487 85.3479665 1.931193178 -0.247911 145 79 SH11741 11741 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5591 5606 212.463832 435.089289 323.7765605 2.510245405 -0.247928 185 22 SH5679 5679 snR34 snR34 316 332 86.027336 221.753989 153.8906625 2.187212269 -0.247937 200 6 SH15624 15624 YBR181C_2_592732_591670_INTRON_7_358 intron 46.297679 199.018551 46.297679 153.720872 100.0092755 2.000040281 -0.248121 193 29 SH15507 15507 YBR048W_2_332790_333771_INTRON_46_556 intron 28.703261 151.414123 28.703261 123.710862 76.2070615 1.881995216 -0.24815 147 25 SH8383 8383 snoRNA cluster 5 5' 40.074247 182.19278 40.074247 143.118533 91.59639 1.961878358 -0.248177 107 101 SH9897 9897 RUF5-1 RUF5-1 291 303 29.475404 125.018611 77.2470075 1.887881664 -0.24821 209 74 SH12852 12852 MT COX1 COX1ai1 68.95222 260.242594 68.95222 192.290374 130.621297 2.116013992 -0.248334 133 15 SH13376 13376 MT COX1 intronic 22.130558 118.361509 22.130558 97.230951 59.6807545 1.775834305 -0.248389 201 92 SH19161 19161 YPL075W_16_412249_415357_INTRON_9_759 intron 23.806328 132.831283 23.806328 110.024955 66.9156415 1.825527646 -0.248395 14 101 SH178 178 Arg2 6-12 6 18 28.228944 122.919442 75.574193 1.878373518 -0.248491 106 100 SH1573 1573 Leu4 tRNA-exon/intron 36 53 32.278064 129.768317 81.0231905 1.908609341 -0.248535 107 36 SH9843 9843 RUF5-1 RUF5-1 21 41 23.388404 107.614315 65.5013595 1.816250314 -0.24869 130 90 SH19752 19752 Negative Control 29.05459 124.363547 76.7090685 1.884846709 -0.249093 143 32 SH1570 1570 Leu4 tRNA 21 35 23.39251 107.674049 65.5332795 1.816461902 -0.249115 202 42 SH21706 21706 copy of SH11081 11952.77047 14936.35535 13444.56291 4.128546688 -0.24917 39 42 SH20419 20419 YGL030W spliced 28.728153 123.821141 76.274647 1.882380206 -0.249285 87 36 SH1086 1086 Gly4 5' flank 24.281595 112.901391 68.591493 1.836270256 -0.249445 37 18 SH16682 16682 YGL030W_7_439087_439634_INTRON_4_233 intron 32.497962 161.691442 32.497962 130.19348 81.345721 1.910334713 -0.249501 69 79 SH1192 1192 Ile1 5' flank 26.150949 118.762198 72.4565735 1.860077792 -0.249552 138 87 SH12856 12856 MT COX1 COX1ai1 22.412836 121.211359 22.412836 99.798523 61.1056795 1.786081578 -0.249578 175 76 SH8363 8363 snoRNA cluster4 3' 23.863388 133.325746 23.863388 110.462358 67.162873 1.827129266 -0.249595 110 72 SH7060 7060 snR62 91-100 + 3' 91 20.089518 80.491447 50.2904825 1.701485802 -0.249631 89 71 SH21776 21776 copy of SH14040 23.047452 105.429503 64.2384775 1.807795239 -0.249732 6 11 SH16858 16858 YGL187C_7_150529_149708_INTRON_1_342 5' exon 28.96516 152.22163 28.96516 124.25647 76.610815 1.884290082 -0.249831 22 61 SH16520 16520 YER131W_5_423587_424307_INTRON_1_361 5' exon 24.088732 134.902688 24.088732 111.813956 67.951344 1.832198051 -0.249955 87 52 SH19227 19227 YPL090C_16_378390_377286_INTRON_7_400 intron 86.299998 307.794975 86.299998 222.494977 154.3974875 2.188640229 -0.249993 121 8 SH11902 11902 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6396 6411 225.64314 457.828394 341.735767 2.533690436 -0.250202 6 28 SH2749 2749 Pro5 3' flank 23.910201 110.790013 67.350107 1.82833829 -0.250213 183 19 SH18304 18304 YML073C_13_124172_123227_INTRON_16_430 intron 137.444094 446.063375 137.444094 309.619281 223.5316875 2.349339097 -0.250278 183 33 SH14912 14912 MT tRNA Tyr 5' / tRNA 23.991831 134.268017 23.991831 111.276186 67.6340085 1.830165128 -0.250304 134 90 SH1773 1773 Leu7 3' flank 22.709609 102.489598 62.5996035 1.796571582 -0.25038 72 29 SH21031 21031 YMR116C spliced 23.106503 106.047032 64.5767675 1.810076302 -0.250536 132 33 SH73 73 Ala2 1-13 1 13 617.608352 1094.514876 856.061614 2.932505024 -0.250829 175 70 SH13078 13078 MT COX1 COX1ai3 50.239781 209.861441 50.239781 160.62166 105.4307205 2.022967174 -0.250985 60 103 SH16471 16471 YER102W_5_362729_363698_INTRON_1_360 intron 29.131823 152.746172 29.131823 124.614349 76.873086 1.885774316 -0.251091 100 94 SH1776 1776 Leu8 5' flank 30.5982 127.102501 78.8503505 1.896803628 -0.25113 62 15 SH5405 5405 snR31 snR31 91 103 24.367203 113.56181 68.9645065 1.838625633 -0.251209 36 25 SH453 453 Asp1 3' flank 24.050035 111.70289 67.8764625 1.8317192 -0.251278 14 99 SH12683 12683 MT tRNA Trp tRNA / 3' 29.006426 152.423184 29.006426 124.416758 76.711592 1.884860996 -0.251334 127 79 SH20090 20090 YDL012C spliced 22.179661 97.952467 60.066064 1.778629174 -0.251361 195 40 SH1730 1730 Leu7 5' flank 35.236092 135.0603 85.148196 1.930175451 -0.251473 4 35 SH19008 19008 YOR182C_15_678792_678190_INTRON_4_414 exon/intron 23.676906 132.219413 23.676906 109.542507 66.6097065 1.82353752 -0.251575 63 96 SH4761 4761 snR5 5' 23.038847 105.588986 64.3139165 1.808304957 -0.251919 135 83 SH11628 11628 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5026 5041 2889.162681 4304.069333 3596.616007 3.555894073 -0.252073 200 31 SH410 410 Asn1 3' flank 28.772312 124.067804 76.420058 1.883207363 -0.252146 42 100 SH5448 5448 snR32 5' 30.505027 127.007655 78.756341 1.896285531 -0.252173 135 2 SH18509 18509 YMR194W_13_651144_651909_INTRON_17_479 3' exon 27.078252 147.222315 27.078252 121.144063 74.1111575 1.869883596 -0.252404 113 2 SH14140 14140 MT COB intronic 21.705684 114.623857 21.705684 93.918173 57.8119285 1.762017457 -0.25247 72 9 SH15399 15399 YBL050W_2_125087_126081_INTRON_31_146 intron 27.857805 149.382192 27.857805 122.524387 75.191096 1.876166415 -0.252647 8 64 SH10679 10679 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 281 296 1937.860818 3032.044163 2484.952491 3.39531809 -0.252699 179 100 SH19800 19800 Negative Control 24.591137 115.03551 69.8133235 1.843938313 -0.252906 195 23 SH19546 19546 CBP1 2.2 23.780083 110.297266 67.0386745 1.826325419 -0.253322 113 62 SH648 648 Gln2 tRNA 26 42 124.930847 289.084556 207.0077015 2.315986503 -0.253327 80 100 SH4266 4266 telomerase RNA telomerase 366 383 22.639314 102.177148 62.408231 1.795241872 -0.253328 28 81 SH1088 1088 Gly4 5' flank 48.121441 157.230075 102.675758 2.011467918 -0.253468 138 101 SH6668 6668 snR48 3' 22.435536 100.399071 61.4173035 1.788290745 -0.253492 108 24 SH11059 11059 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2181 2197 26486.49258 30169.91407 28328.20332 4.452219031 -0.253842 111 44 SH18400 18400 YMR125W_13_517538_520445_INTRON_26_347 intron 27.179725 147.599816 27.179725 121.420091 74.299908 1.870988276 -0.254055 7 52 SH7195 7195 snR64 snR64 41 55 8384.262887 10971.98893 9678.12591 3.985791268 -0.254091 142 37 SH7187 7187 snR64 snR64 1 17 12114.9584 15165.82589 13640.39215 4.134826856 -0.254384 42 26 SH19534 19534 CBP1 1.2 47.162124 155.694871 101.4284975 2.006159992 -0.254407 203 30 SH18802 18802 YNL301C_14_64561_63569_INTRON_113_544 intron 26.342315 144.879245 26.342315 119.53693 72.9396225 1.862963511 -0.2545 104 10 SH5701 5701 snR34 snR34 426 444 22.546907 101.492622 62.0197645 1.792530113 -0.25459 165 47 SH11079 11079 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2281 2296 22.279121 99.146883 60.713002 1.783281707 -0.254626 123 24 SH16664 16664 YFR032C-A_6_223758_223245_INTRON_1_331 intron 184.183798 572.620933 184.183798 389.437135 286.8104665 2.457594996 -0.25465 207 66 SH5869 5869 snR35 531-540 + 3' 531 30.034704 126.353547 78.1941255 1.893174127 -0.254707 177 17 SH10958 10958 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1676 1694 634.270223 1123.35217 878.8111965 2.943895581 -0.254733 214 93 SH10897 10897 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1371 1386 28.771315 124.221882 76.4965985 1.883642124 -0.254741 12 61 SH15572 15572 YBR084C-A_2_415219_414144_INTRON_3_508 intron 22.345042 121.08772 22.345042 99.742678 61.04386 1.785641988 -0.254821 74 18 SH17629 17629 YJR094W-A_10_608000_608553_INTRON_3_277 intron 31.234931 158.656365 31.234931 128.421434 79.8281825 1.902156242 -0.25488 16 61 SH9278 9278 RUF1 5' 22.31273 99.481339 60.8970345 1.784596144 -0.255028 69 64 SH12807 12807 MT COX1 COX1ai1 22.219518 119.92307 22.219518 98.703552 60.461535 1.781479169 -0.255376 12 77 SH12277 12277 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.125171 147.529018 27.125171 121.403847 74.264509 1.870781314 -0.25542 117 49 SH5786 5786 snR35 snR35 116 135 31.206924 128.409743 79.8083335 1.902048242 -0.255449 128 63 SH8471 8471 snoRNA cluster 5 3' 27.867098 149.57618 27.867098 122.709082 75.28809 1.87672628 -0.25549 55 52 SH15564 15564 YBR084C-A_2_415219_414144_INTRON_3_508 exon/intron 27.537916 148.672794 27.537916 122.134878 74.836397 1.87411287 -0.255498 92 8 SH1089 1089 Gly4 5' flank 81.181732 214.303141 147.7424365 2.169505257 -0.255664 66 23 SH2634 2634 Pro3 3' flank 22.307437 99.51079 60.9091135 1.784682279 -0.25577 17 39 SH16128 16128 YDR064W_4_579453_580447_INTRON_22_560 intron 25.258216 141.233559 25.258216 116.975343 71.1167795 1.851972082 -0.255777 202 80 SH21643 21643 copy of SH8353 48.100114 157.408939 102.7545265 2.011800962 -0.256071 124 72 SH11039 11039 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2081 2096 28924.03476 32648.63898 30786.33687 4.488358017 -0.256128 38 80 SH5848 5848 snR35 snR35 426 445 23.169073 106.971899 65.070486 1.81338405 -0.256237 68 41 SH12408 12408 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.993196 149.966572 27.993196 122.973376 75.483286 1.877850798 -0.256251 73 70 SH11891 11891 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6341 6358 220.659662 451.136465 335.8980635 2.5262075 -0.256255 30 6 SH7390 7390 snR68 3' 83.249119 217.943841 150.59648 2.177814821 -0.256333 65 74 SH13514 13514 MT COX1 intronic 21.799452 115.923264 21.799452 95.123812 58.461632 1.766870935 -0.256345 69 89 SH5577 5577 snR33 166-183 + 3' 171 22.58297 101.995354 62.289162 1.794412488 -0.256353 127 34 SH11587 11587 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4821 4834 2363.773786 3620.109422 2991.941604 3.475953113 -0.25666 3 63 SH18978 18978 YOR096W_15_505793_506766_INTRON_145_545 intron 22.245625 120.326403 22.245625 99.080778 60.6632015 1.782925326 -0.25685 199 103 SH20366 20366 YER133W spliced 27.267415 121.740477 74.503946 1.872179275 -0.256874 163 65 SH8351 8351 snoRNA cluster4 3' 57.080187 228.875048 57.080187 172.794861 114.937524 2.060461837 -0.257251 180 31 SH20759 20759 YJR094W-A spliced 126.220463 291.940376 209.0804195 2.320313363 -0.257287 135 13 SH12758 12758 MT COX1 COX1ai1 478.490323 1356.091526 478.490323 878.601203 678.545763 2.831579143 -0.257348 108 93 SH2076 2076 Lys4 tRNA-intron/exon 46 62 22.927487 105.192029 64.059758 1.806585294 -0.257505 106 13 SH3485 3485 Tyr1 5' flank 22.068501 97.606086 59.8372935 1.776971942 -0.257508 203 52 SH12677 12677 MT tRNA Trp 5' / tRNA 24.241 136.641183 24.241 113.400183 68.8205915 1.837718401 -0.257758 186 86 SH14878 14878 MT tRNA Ala 5' / tRNA 22.58571 123.761366 22.58571 102.175656 62.380683 1.795050125 -0.257843 20 53 SH18504 18504 YMR194W_13_651144_651909_INTRON_17_479 intron 22.450125 122.457697 22.450125 101.007572 61.7288485 1.790488176 -0.25814 209 7 SH13025 13025 MT COX1 COX1ai2 25.989706 143.923678 25.989706 118.933972 72.461839 1.860109352 -0.258469 105 97 SH13364 13364 MT COX1 intronic 26.404474 145.356743 26.404474 119.952269 73.1783715 1.864382741 -0.258674 69 62 SH13782 13782 MT COB intronic 22.450686 122.524497 22.450686 101.073811 61.7622485 1.790723098 -0.258731 60 8 SH9524 9524 RUF3 RUF3 6 23 25.455309 117.64598 71.5506445 1.85461355 -0.258763 16 64 SH293 293 Arg4 61-72 + 3' flank 61 3' flank 22.436759 100.958528 61.6976435 1.790268577 -0.258804 181 72 SH19862 19862 Negative Control 25.879263 118.696335 72.287799 1.859065002 -0.258966 180 63 SH9277 9277 RUF1 5' 22.04843 97.58929 59.81886 1.776838132 -0.259078 205 79 SH15022 15022 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 21.989866 118.096826 21.989866 97.10696 59.548413 1.774870192 -0.259331 73 42 SH11788 11788 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5826 5839 16508.43525 19974.24876 18241.34201 4.261056786 -0.259356 158 30 SH6106 6106 snR37 3' 22.901665 105.165518 64.0335915 1.806407861 -0.259413 102 60 SH3904 3904 RNase MRP 5' 27.07516 121.552571 74.3138655 1.871069852 -0.25946 47 50 SH16272 16272 YDR447C_4_1355542_1354818_INTRON_4_317 intron 43.545004 192.462851 43.545004 149.917847 96.7314255 1.985567588 -0.259509 18 59 SH20174 20174 YDL137W spliced 36.387878 137.593393 86.9906355 1.939472504 -0.259523 195 42 SH20488 20488 YGL232W spliced 24.183112 113.214725 68.6989185 1.8369499 -0.259524 33 57 SH10784 10784 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 806 822 1372.006121 2242.247506 1807.126814 3.25698863 -0.25954 83 3 SH9270 9270 RUF1 5' 23.384295 108.53052 65.9574075 1.819263577 -0.259778 57 104 SH20167 20167 YDL136W spliced 25.326189 117.397619 71.361904 1.853466429 -0.259874 4 51 SH19570 19570 AEP2/ATP13 0.6 27.137097 121.694231 74.415664 1.871664361 -0.260002 205 67 SH3411 3411 Thr4 3' flank 25.484976 117.805854 71.645415 1.855188403 -0.260155 176 26 SH21125 21125 YNL130C spliced 39.337281 142.763592 91.0504365 1.959282032 -0.260381 126 95 SH6942 6942 snR58 snR58 71 88 23.298731 108.080982 65.6898565 1.817498313 -0.260393 39 67 SH17736 17736 YKL156W_11_158616_159214_INTRON_4_353 intron 23.442964 131.415272 23.442964 108.972308 66.207636 1.820908081 -0.260919 56 61 SH2279 2279 Phe2 5' flank - tRNA10 10 37.162106 139.048734 88.10542 1.945002626 -0.260926 177 69 SH5717 5717 snR34 snR34 506 522 50.336598 161.640543 105.9885705 2.025259035 -0.260962 20 101 SH1105 1105 Gly4 tRNA 1 13 1070.621574 1796.863755 1433.742665 3.156471209 -0.261022 174 70 SH3732 3732 Val3 3' flank 23.987929 112.207352 68.0976405 1.833132064 -0.261186 197 78 SH12604 12604 MT_15S MT_15S 21.503202 113.505659 21.503202 93.002457 57.2528295 1.757796955 -0.261189 56 80 SH8922 8922 LSR1 / U2 RNA 3' 26.34686 119.982662 73.164761 1.864301958 -0.261339 25 85 SH18841 18841 YNL312W_14_48286_49215_INTRON_8_115 5' exon 23.091116 129.036776 23.091116 106.94566 65.018388 1.813036198 -0.261353 64 60 SH12426 12426 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 22.39247 122.235855 22.39247 100.843385 61.6179275 1.789707087 -0.261467 108 77 SH12141 12141 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7591 7611 22.024324 97.631937 59.8281305 1.776905432 -0.261594 189 85 SH11259 11259 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3181 3194 166.663983 361.478307 264.071145 2.421720949 -0.261648 152 75 SH11742 11742 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5596 5611 1737.312334 2769.59987 2253.456102 3.352849102 -0.261719 151 96 SH12193 12193 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7851 7866 29.432439 125.778918 77.6056785 1.8898935 -0.261942 131 32 SH842 842 Glu2 5' flank 29.328363 125.603206 77.4657845 1.889109923 -0.261945 143 69 SH2708 2708 Pro5 5' flank 22.348253 100.521479 61.434866 1.788414915 -0.262127 11 96 SH9580 9580 RUF3 RUF3 286 298 30.427929 127.50395 78.9659395 1.897439807 -0.262273 40 102 SH5863 5863 snR35 snR35 501 518 25.265278 117.399966 71.332622 1.853288188 -0.262324 12 37 SH11047 11047 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2121 2138 26286.80087 30135.77571 28211.28829 4.450422919 -0.262326 182 9 SH19054 19054 YOR234C_15_779404_778554_INTRON_20_546 intron 25.951646 144.042014 25.951646 119.090368 72.521007 1.860463826 -0.262412 169 95 SH20334 20334 YER074W-A spliced 31.137293 128.734592 79.9359425 1.9027421 -0.262493 21 21 SH11468 11468 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4226 4241 2179.21832 3383.832342 2781.525331 3.444283019 -0.262659 167 7 SH8108 8108 snoRNA cluster 3; 5' 55.809621 225.946712 55.809621 171.137091 113.473356 2.054893899 -0.262717 210 75 SH10183 10183 RUF6 RUF6 761 776 24.026009 112.571843 68.298926 1.834413874 -0.262765 155 6 SH2610 2610 Pro3 tRNA 1 13 1082.182792 1816.528839 1449.355816 3.161175017 -0.262926 11 31 SH12539 12539 MT_ORF6 + ORF7 (hypothetical) ORF6/7 25.389713 142.135455 25.389713 117.745742 71.5677275 1.854717227 -0.262944 173 24 SH5540 5540 snR33 5' - 8 -14 8 24.248206 113.908509 69.0783575 1.839342003 -0.26298 96 5 SH14735 14735 MT tRNA cys; tRNA his tRNA his / 3' 22.530069 123.765113 22.530069 102.235044 62.3825565 1.795063169 -0.263122 57 18 SH16430 16430 YER074W_5_306319_307192_INTRON_4_469 intron 22.615428 124.613179 22.615428 102.997751 62.8065895 1.798005211 -0.263142 149 102 SH20412 20412 YFR032C-A spliced 43.41578 149.984321 96.7000505 1.985426701 -0.263189 195 14 SH10905 10905 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1411 1430 11627.90977 14713.36366 13170.63672 4.119606771 -0.263274 70 62 SH11246 11246 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5.8S 3116 3135 2578.120398 3923.62932 3250.874859 3.512000252 -0.263342 105 33 SH19105 19105 YOR312C_15_901173_900242_INTRON_2_427 intron 27.296938 148.476878 27.296938 122.17994 74.738439 1.873544023 -0.263442 6 84 SH19488 19488 YPT1 24.585731 115.786958 70.1863445 1.846252624 -0.263565 95 100 SH9413 9413 RUF2 5' 23.76844 111.134584 67.451512 1.828991689 -0.26375 46 23 SH19971 19971 YBL072C spliced 29.453111 125.934173 77.693642 1.89038548 -0.26392 26 45 SH13475 13475 MT COX1 intronic 23.063123 129.068712 23.063123 107.005589 65.034356 1.813142844 -0.264021 105 40 SH3851 3851 RNaseP RNaseP 221 233 21.86336 96.461512 59.162436 1.772046048 -0.264045 29 101 SH9982 9982 RUF5-1 RUF5-1 716 736 47.053911 156.310807 101.682359 2.007245613 -0.264187 118 75 SH19870 19870 Negative Control 29.25241 125.611497 77.4319535 1.888920216 -0.2642 92 71 SH17850 17850 YKR094C_11_618384_617630_INTRON_9_376 3' exon 29.01887 153.239342 29.01887 125.220472 77.119671 1.887165168 -0.264301 166 30 SH8697 8697 LSR1 / U2 RNA U2 126 143 143.739678 323.062876 233.401277 2.368103228 -0.264539 85 23 SH20352 20352 YER117W spliced 21.908108 96.91788 59.412994 1.773881438 -0.264612 22 95 SH4747 4747 snR5 5' 22.254383 99.951018 61.1027005 1.786060405 -0.264622 98 42 SH15032 15032 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 21.92736 118.025674 21.92736 97.098314 59.512837 1.774610654 -0.264695 17 6 SH13356 13356 MT COX1 intronic 25.567747 142.887159 25.567747 118.319412 71.9435795 1.856992042 -0.265102 62 78 SH8279 8279 snoRNA cluster4 snR67/intergenic 21.872659 117.535087 21.872659 96.662428 59.2675435 1.772816927 -0.265214 139 47 SH150 150 Arg1 3' flank 22.133244 98.951661 60.5424525 1.78206001 -0.265256 74 54 SH10904 10904 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1406 1426 3911.807141 5661.698918 4786.75303 3.680041021 -0.265272 89 99 SH7274 7274 snR65 3' 25.600963 118.417607 72.009285 1.857388499 -0.265365 115 21 SH14356 14356 MT ORF9 and ORF10 (hypothetical) ORF9 22.6798 125.498483 22.6798 103.818683 63.2492415 1.801055322 -0.265449 122 94 SH11756 11756 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5666 5681 246.989755 498.721202 372.8554785 2.571540529 -0.265759 67 94 SH458 458 Asp1 3' flank 23.865555 111.897077 67.881316 1.831750253 -0.265896 150 6 SH1916 1916 Lys1 tRNA 36 53 14025.95282 17381.05579 15703.5043 4.195996578 -0.26594 60 41 SH14790 14790 "MT tRNAs (Lys, Arg1, Gly)" 5' 24.949812 140.795387 24.949812 116.845575 70.8976935 1.850632107 -0.265989 203 81 SH13 13 Ala1 5' flank 24.136288 113.529945 68.8331165 1.837797433 -0.266189 14 75 SH15932 15932 YDL115C_4_255042_253994_INTRON_1_88 5' exon 27.164736 148.282238 27.164736 122.117502 74.641119 1.872978142 -0.266352 180 101 SH15677 15677 YBR191W_2_606228_607098_INTRON_12_399 intron 32.939866 163.944761 32.939866 132.004895 82.4723805 1.91630853 -0.26636 176 13 SH10018 10018 RUF6 5' 2582.982294 3938.341039 3260.661667 3.513305738 -0.266554 2 25 SH17637 17637 YJR094W-A_10_608000_608553_INTRON_3_277 3' exon 56.938458 229.366224 56.938458 173.427766 115.183112 2.061388808 -0.266589 6 6 SH10690 10690 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 336 354 30.888629 128.571329 79.729979 1.90162165 -0.266652 88 49 SH9683 9683 RUF4 RUF4 191 210 21.723219 95.485972 58.6045955 1.767931673 -0.266737 206 82 SH8433 8433 snoRNA cluster 5 intergenic 28.438971 151.82364 28.438971 124.384669 76.41182 1.883160544 -0.266943 22 89 SH2723 2723 Pro5 5' flank - tRNA10 10 511.786715 937.795037 724.790876 2.860212718 -0.267073 3 8 SH17961 17961 YLR185W_12_522665_523290_INTRON_8_366 intron 46.352117 200.701462 46.352117 155.349345 100.850731 2.00367905 -0.267087 66 14 SH2882 2882 Pro8 5' flank 1149.928845 1923.596797 1536.762821 3.186606845 -0.267146 40 3 SH21585 21585 copy of SH6042 22.957664 106.540297 64.7489805 1.811232935 -0.267406 6 50 SH20164 20164 YDL136W spliced 36.8987 139.062526 87.980613 1.944386984 -0.267667 82 2 SH1984 1984 Lys2 3' flank 23.170317 107.966244 65.5682805 1.816693795 -0.267942 85 69 SH20272 20272 YDR447C spliced 78.900964 211.844675 145.3728195 2.162483214 -0.268075 85 78 SH2891 2891 Pro8 5' flank 22.293476 100.659632 61.476554 1.788709516 -0.268155 120 16 SH11022 11022 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1996 2009 38783.02938 42594.47627 40688.75283 4.609474378 -0.268193 138 37 SH2038 2038 Lys3 3' flank 62.758469 183.644777 123.201623 2.090616429 -0.268265 125 104 SH11900 11900 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6386 6401 1032.640463 1747.915908 1390.278186 3.143101708 -0.268288 210 11 SH9766 9766 RUF4 RUF4 606 624 25.492864 118.338222 71.915543 1.856822764 -0.268339 2 80 SH20519 20519 YGR034W spliced 23.52589 110.102266 66.814078 1.82486798 -0.268379 104 26 SH13852 13852 MT COB Cytbi2 21.256328 111.805074 21.256328 91.548746 56.402537 1.751298639 -0.268411 70 44 SH11802 11802 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5896 5913 4447.302964 6348.623833 5397.963399 3.732229935 -0.268423 177 62 SH2602 2602 Pro3 5' flank 22.130335 99.251261 60.690798 1.783122848 -0.268454 33 37 SH9255 9255 snR6 / U6 RNA 3' 31.021068 128.913801 79.9674345 1.902913163 -0.268485 157 103 SH2193 2193 Met2 3' flank 38.067506 141.208911 89.6382085 1.952493168 -0.269064 42 3 SH19504 19504 YPT1 27.444741 122.774557 75.109649 1.875695732 -0.269072 101 33 SH8254 8254 snoRNA cluster4 5' 23.671541 133.707892 23.671541 111.036351 67.353946 1.828363044 -0.269204 75 51 SH3601 3601 Val1 tRNA 1 15 177.447327 381.585123 279.516225 2.446407022 -0.269415 162 53 SH21117 21117 YNL096C spliced 22.288404 100.768927 61.5286655 1.789077496 -0.269647 177 97 SH19036 19036 YOR234C_15_779404_778554_INTRON_20_546 intron 24.311366 138.201832 24.311366 114.890466 69.600916 1.842614955 -0.269729 171 43 SH16513 16513 YER117W_5_396765_397649_INTRON_43_513 intron 22.715894 126.318629 22.715894 104.602735 63.6593145 1.803861958 -0.269744 153 11 SH11509 11509 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4431 4448 28178.88245 32194.57531 30186.72888 4.479816054 -0.269882 7 90 SH9798 9798 RUF4 RUF4 766 782 34.828719 135.610565 85.219642 1.930539705 -0.269996 18 82 SH16639 16639 YFR024C-A_6_203420_201947_INTRON_48_165 intron 26.292601 145.71145 26.292601 120.418849 73.355725 1.865434014 -0.27024 72 89 SH21799 21799 copy of SH15069 22.761092 105.066973 63.9140325 1.805596219 -0.270263 201 102 SH18423 18423 YMR133W_13_536206_537608_INTRON_1243_1358 3' exon 23.464281 132.378979 23.464281 109.914698 66.6894895 1.824057393 -0.27043 81 68 SH1315 1315 Ile3 5' flank 22.675575 104.317516 63.4965455 1.802750098 -0.270477 132 6 SH8529 8529 snR19 / U1 RNA U1 141 156 23.434152 109.743819 66.5889855 1.823402398 -0.270517 45 84 SH6183 6183 snR40 5' 21.624536 94.990625 58.3075805 1.765725021 -0.270551 110 14 SH17013 17013 YGR148C_7_788173_787307_INTRON_1_392 intron 21.573206 115.119864 21.573206 94.546658 58.059932 1.763876523 -0.270658 14 56 SH17993 17993 YLR287C-A_12_713158_712537_INTRON_4_433 exon/intron 22.639936 125.655879 22.639936 104.015943 63.3279395 1.801595358 -0.270661 108 81 SH19682 19682 SIR1 2.4 21.913193 97.578964 59.7460785 1.776309405 -0.270731 162 32 SH3188 3188 Ser5 tRNA 61 76 805.766518 1402.912988 1104.339753 3.043102706 -0.270766 138 98 SH7687 7687 snoRNA cluster1 intergenic 24.400749 138.942968 24.400749 115.542219 69.971484 1.844921085 -0.271027 127 22 SH10000 10000 RUF5-1 3' 21.10027 90.455813 55.7780415 1.746463261 -0.271149 189 41 SH2755 2755 Pro5 3' flank 28.445875 124.660002 76.5529385 1.883961866 -0.271318 44 15 SH1989 1989 Lys2 3' flank 2626.265639 4008.579797 3317.422718 3.520800814 -0.271323 185 14 SH7890 7890 snoRNA cluster1 intergenic 25.807613 144.122907 25.807613 119.315294 72.5614535 1.860705974 -0.271541 184 42 SH3625 3625 Val1 3' flank 23.772957 111.852409 67.812683 1.831310928 -0.27165 205 69 SH20530 20530 YGR148C spliced 27.1259 122.370865 74.7483825 1.873601799 -0.271808 212 62 SH21642 21642 copy of SH8352 33.062998 132.595108 82.829053 1.918182696 -0.272019 78 53 SH11026 11026 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2016 2033 2710.655002 4124.482159 3417.568581 3.533717238 -0.27251 183 40 SH5913 5913 snR36 snR36 21 40 89.486627 231.037441 160.262034 2.20483065 -0.272614 100 51 SH11616 11616 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4966 4983 2049.921658 3227.565914 2638.743786 3.421397224 -0.272644 191 82 SH13133 13133 MT COX1 COX1ai3 22.167228 121.185377 22.167228 100.018149 61.0926885 1.785989238 -0.272774 148 63 SH13998 13998 MT COB intronic 22.855705 128.059154 22.855705 106.203449 64.529577 1.809758818 -0.272824 49 59 SH9799 9799 RUF4 771-788 + 3' 771 43.879544 151.559411 97.7194775 1.989981136 -0.273325 165 61 SH18287 18287 YML067C_13_140214_139063_INTRON_32_124 intron 22.370026 123.257641 22.370026 101.887615 62.1288205 1.793293109 -0.273425 191 83 SH19280 19280 YPL143W_16_282121_282969_INTRON_20_544 intron 22.301523 122.585403 22.301523 101.28388 61.7927015 1.790937182 -0.273492 58 79 SH19293 19293 YPL175W_16_218629_220087_INTRON_18_117 intron 22.197914 121.564028 22.197914 100.366114 61.282014 1.78733303 -0.273516 116 23 SH258 258 Arg3 3' flank 24.425357 115.94752 70.1864385 1.846253205 -0.273867 107 82 SH19340 19340 YPL241C_16_96258_95372_INTRON_26_105 intron/exon 20.048172 101.218397 20.048172 82.170225 51.1091985 1.70849907 -0.273993 99 61 SH21655 21655 copy of SH8990 104.994211 258.431354 181.7127825 2.259385479 -0.27416 213 47 SH292 292 Arg4 56-68 56 68 24.396474 115.820253 70.1083635 1.84576983 -0.274373 72 24 SH16683 16683 YGL030W_7_439087_439634_INTRON_4_233 intron 22.920553 128.898587 22.920553 106.978034 64.9492935 1.812574431 -0.274494 104 100 SH15 15 Ala1 5' flank 28.079092 124.235165 76.1571285 1.881710561 -0.274861 81 89 SH7889 7889 snoRNA cluster1 intergenic 20.330207 103.804103 20.330207 84.473896 52.4020515 1.71934829 -0.274935 8 43 SH10710 10710 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 436 449 124.982749 292.961549 208.972149 2.320088409 -0.275118 25 60 SH10448 10448 RUF8 RUF8 166 184 22.198689 100.54305 61.3708695 1.787962276 -0.275166 155 81 SH19001 19001 YOR122C_15_552886_552297_INTRON_14_222 intron 23.231454 131.191258 23.231454 108.959804 66.095629 1.82017274 -0.275373 213 40 SH5959 5959 snR36 snR36 251 265 26.456176 121.150343 73.8032595 1.868075543 -0.275438 208 35 SH5659 5659 snR34 snR34 216 230 120.687875 285.701381 203.194628 2.307912222 -0.275501 209 58 SH15487 15487 YBL092W_2_45639_46364_INTRON_1_333 intron 35.17963 170.789156 35.17963 136.609526 85.894578 1.93396575 -0.275581 50 70 SH21156 21156 YNL265C spliced 22.956279 107.352067 65.154173 1.813942237 -0.275621 35 9 SH6281 6281 snR42 snR42 186 203 73.618586 203.476143 138.5473645 2.141598269 -0.27571 167 16 SH18970 18970 YOR096W_15_505793_506766_INTRON_145_545 intron 100.291718 349.784459 100.291718 250.492741 175.3922295 2.244010349 -0.275727 137 25 SH6456 6456 snR45 snR45 126 145 22.798707 106.005805 64.402256 1.808901081 -0.275779 209 32 SH19755 19755 Negative Control 28.04232 124.238021 76.1401705 1.881613845 -0.27598 136 6 SH14301 14301 MT VAR1 includes 5’ processing site VAR1 21.571136 115.643762 21.571136 95.072626 58.321881 1.765831522 -0.276146 195 15 SH15129 15129 MT tRNA Phe tRNA 23.939473 136.204994 23.939473 113.265521 68.602497 1.836339923 -0.276407 136 92 SH428 428 Asp1 5' flank 20.631674 87.060279 53.8459765 1.731153257 -0.276944 80 99 SH10454 10454 RUF8 RUF8 196 215 21.814597 97.346992 59.5807945 1.77510629 -0.277088 75 72 SH8352 8352 snoRNA cluster4 3' 64.781535 251.884827 64.781535 188.103292 126.4424135 2.101892777 -0.277275 195 98 SH3579 3579 Tyr2 3' flank 23.138344 108.585349 65.8618465 1.818633902 -0.277454 152 16 SH15031 15031 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 22.372801 123.707784 22.372801 102.334983 62.353892 1.794863566 -0.277458 2 79 SH18475 18475 YMR143W_13_551927_552902_INTRON_25_568 intron 23.585373 133.838922 23.585373 111.253549 67.419461 1.828785276 -0.277569 130 44 SH18166 18166 YLR448W_12_1028848_1029762_INTRON_16_399 intron 28.065208 151.44211 28.065208 124.376902 76.221055 1.882074956 -0.277624 143 65 SH18737 18737 YNL162W_14_331319_332151_INTRON_5_516 intron 22.485595 124.855306 22.485595 103.369711 62.927653 1.798841534 -0.277656 180 18 SH12716 12716 MT ORF 8 (hypothetical) 3' 20.844588 108.706155 20.844588 88.861567 54.8530775 1.739200998 -0.277676 158 70 SH15783 15783 YDL029W_4_399336_400634_INTRON_23_145 5' exon 28.64188 153.053327 28.64188 125.411447 77.0266635 1.886641086 -0.278138 73 11 SH14541 14541 MT 21S rRNA 21S rRNA3 21.222673 112.431912 21.222673 92.209239 56.715956 1.753705257 -0.278339 107 70 SH14921 14921 MT tRNA Tyr 3' 22.402828 124.125994 22.402828 102.723166 62.562997 1.796317545 -0.278586 181 63 SH6185 6185 snR40 5' - 5 -14 5 30.09478 127.959143 79.0269615 1.897775284 -0.278825 66 89 SH10449 10449 RUF8 RUF8 171 188 22.218613 101.106972 61.6627925 1.790023189 -0.278904 149 45 SH18659 18659 YNL112W_14_413636_416278_INTRON_1274_2275 intron 97.940545 343.765823 97.940545 246.825278 172.3829115 2.236494212 -0.278919 165 68 SH6074 6074 snR37 snR37 286 302 22.156165 100.606233 61.381199 1.788035368 -0.279442 173 32 SH11943 11943 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6601 6619 552.772066 1011.475566 782.123816 2.893275511 -0.279447 80 95 SH19430 19430 YPR132W_16_794960_795762_INTRON_66_430 intron 22.071228 120.97042 22.071228 99.899192 60.98521 1.785224524 -0.279907 121 66 SH18018 18018 YLR306W_12_744151_744851_INTRON_4_137 5' exon 26.372597 146.612468 26.372597 121.239871 73.806234 1.868093046 -0.279998 84 7 SH7380 7380 snR68 121-136 + 3' 121 45.742089 155.350029 100.546059 2.002365053 -0.280035 193 16 SH3461 3461 Trp1 3' flank 34.741277 136.143719 85.442498 1.931673937 -0.280051 51 50 SH619 619 Gln1 3' flank 94.69849 241.297982 167.998236 2.225304722 -0.280063 159 29 SH7363 7363 snR68 snR68 36 48 14028.54219 17545.00821 15786.7752 4.198293425 -0.280104 167 85 SH11694 11694 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5356 5371 551.314608 1009.615841 780.4652245 2.892353557 -0.280182 61 45 SH11618 11618 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4976 4991 29436.77508 33694.21875 31565.49691 4.499212631 -0.280779 163 31 SH8053 8053 snoRNA cluster 2 intergenic 22.631606 126.665695 22.631606 105.034089 63.8328475 1.805044218 -0.280858 43 17 SH413 413 Asn1 3' flank 24.353372 116.156109 70.2547405 1.846675634 -0.280912 132 26 SH18625 18625 YNL096C_14_444312_443395_INTRON_145_489 intron 25.89363 145.029198 25.89363 120.135568 73.014599 1.863409704 -0.281116 127 84 SH19277 19277 YPL143W_16_282121_282969_INTRON_20_544 intron 25.290154 142.934793 25.290154 118.644639 71.9673965 1.857135792 -0.281206 42 5 SH7892 7892 snoRNA cluster1 intergenic 37.868752 178.605366 37.868752 141.736614 89.802683 1.953289312 -0.281211 164 103 SH21924 21924 copy of SH20399 23.410948 110.540552 66.97575 1.825917586 -0.281332 86 17 SH2553 2553 Pro2 tRNA 1 13 1051.391971 1791.707089 1421.54953 3.152761996 -0.281377 11 19 SH12249 12249 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 27.756908 150.822026 27.756908 124.065118 75.911013 1.880304787 -0.281458 20 97 SH16166 16166 YDR139C_4_733917_733611_INTRON_150_222 exon/intron 24.063302 137.549196 24.063302 114.485894 69.274598 1.840574014 -0.281755 6 93 SH1480 1480 Leu2 3' flank 35.046216 136.838875 85.9425455 1.934208213 -0.282327 74 76 SH20801 20801 YKL157W spliced 24.096571 114.752592 69.4245815 1.84151327 -0.282495 148 45 SH10511 10511 RUF8 RUF8 481 502 22.605773 104.980662 63.7932175 1.804774507 -0.282545 132 96 SH837 837 Glu2 5' flank 25.793492 120.000536 72.897014 1.862709739 -0.282878 97 62 SH9818 9818 RUF4 3' 23.142881 109.098023 66.120452 1.820335814 -0.283142 199 49 SH4946 4946 snR9 snR9 136 153 24.315704 116.164658 70.240181 1.846585622 -0.283499 136 40 SH6017 6017 snR37 snR37 1 18 87.7346 229.457632 158.596116 2.200292547 -0.283828 174 95 SH13503 13503 MT COX1 intronic 23.80177 135.908179 23.80177 113.106409 68.4540895 1.835399398 -0.283908 134 4 SH2884 2884 Pro8 5' flank 21.37722 94.161028 57.769124 1.761695782 -0.284361 141 102 SH5688 5688 snR34 snR34 361 377 649.726826 1170.085067 909.9059465 2.958996503 -0.284676 153 24 SH11656 11656 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5166 5179 21646.11665 25774.31133 23710.21399 4.374935474 -0.284721 111 79 SH14881 14881 MT tRNA Ala tRNA 25.335219 143.314039 25.335219 118.97882 72.1570195 1.858278586 -0.284722 139 99 SH3225 3225 Thr1 5' flank 26.413676 121.649906 74.031791 1.869418256 -0.2848 84 79 SH3731 3731 Val3 3' flank 22.220186 101.791331 62.0057585 1.792432024 -0.285344 9 90 SH4597 4597 snR3 5' 51.495408 165.761003 108.6282055 2.035942605 -0.285545 147 99 SH380 380 Asn1 5' flank 24.29557 116.259198 70.277384 1.846815587 -0.285871 88 22 SH10683 10683 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 301 316 188.550499 404.643453 296.596976 2.472166719 -0.286218 42 53 SH1843 1843 Leu9 5' flank 22.68065 106.079798 64.380224 1.808752483 -0.286379 104 40 SH8989 8989 snR17a / U3a U3a 231 247 357.61282 694.9027 526.25776 2.721198513 -0.286467 179 104 SH6528 6528 snR46 snR46 131 150 56.903584 175.265221 116.0844025 2.06477387 -0.286723 78 30 SH13706 13706 MT tRNAGlu (and 5' processing site for COB) tRNA 90.292861 323.675839 90.292861 234.382978 162.3379195 2.210419976 -0.286725 36 67 SH15025 15025 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 25.60157 144.373634 25.60157 119.772064 72.686817 1.861455651 -0.286767 52 5 SH21153 21153 YNL265C spliced 23.408423 111.000995 67.204709 1.827399705 -0.286803 20 15 SH20397 20397 YFR024C-A spliced 27.459612 123.86351 75.661561 1.878875297 -0.286893 190 90 SH16521 16521 YER131W_5_423587_424307_INTRON_1_361 exon/intron 26.660295 148.057429 26.660295 122.397134 74.5287145 1.87232363 -0.28703 4 76 SH13869 13869 MT COB intronic 36.259941 174.569367 36.259941 139.309426 87.7846835 1.943418748 -0.287225 91 93 SH11224 11224 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" ITS1 3006 3027 25.976938 120.758615 73.3677765 1.865505357 -0.287644 22 31 SH20215 20215 YDR064W spliced 28.741513 126.163342 77.4524275 1.889035034 -0.287664 53 72 SH18860 18860 YNR053C_14_723108_721117_INTRON_811_1341 intron 24.002037 137.657936 24.002037 114.655899 69.328968 1.840914736 -0.287752 178 88 SH10936 10936 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1566 1581 14338.15714 17979.32979 16158.74347 4.208407586 -0.288166 42 71 SH7953 7953 snoRNA cluster 2 5' 22.824447 129.424682 22.824447 107.600235 65.212341 1.814329791 -0.288175 203 44 SH12662 12662 MT_15S MT_15S 26.806969 148.577214 26.806969 122.770245 74.788607 1.873835444 -0.288211 64 79 SH11027 11027 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2021 2040 5825.434416 8150.195961 6987.815189 3.84434141 -0.288483 98 99 SH16890 16890 YGL189C_7_148970_148233_INTRON_1_368 3' exon 28.928124 154.467448 28.928124 126.539324 77.733724 1.890609474 -0.28853 102 15 SH5498 5498 snR32 snR32 151 168 174.404887 380.916682 277.6607845 2.443514546 -0.288661 20 23 SH15994 15994 YDL136W_4_217600_218367_INTRON_4_408 3' exon 24.291358 139.803255 24.291358 116.511897 70.4016275 1.847582699 -0.288917 120 57 SH11867 11867 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6221 6238 1814.178454 2929.724365 2371.95141 3.375105788 -0.289221 201 46 SH18429 18429 YMR142C_13_551206_550205_INTRON_5_406 intron 28.944732 154.581242 28.944732 126.63651 77.790621 1.890927238 -0.289649 209 63 SH18173 18173 YLR448W_12_1028848_1029762_INTRON_16_399 intron 26.253034 146.844734 26.253034 121.5917 73.922367 1.868775865 -0.290008 82 66 SH15782 15782 YDL029W_4_399336_400634_INTRON_23_145 5' exon 23.190661 132.192714 23.190661 110.002053 66.596357 1.823450473 -0.290337 201 82 SH2983 2983 Ser1 3' flank 22.144101 101.628765 61.886433 1.791595452 -0.29034 204 53 SH10654 10654 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 156 174 41.958651 149.579186 95.7689185 1.981224583 -0.290366 13 99 SH6428 6428 snR45 5' - 5 -14 5 30.787771 129.923877 80.355824 1.905017359 -0.290789 186 82 SH13342 13342 MT COX1 COX1-ai5a 22.263082 124.052019 22.263082 102.788937 62.5260095 1.796060712 -0.291166 162 99 SH15369 15369 YBL027W_2_168385_169338_INTRON_3_386 intron 45.91252 201.471523 45.91252 156.559003 101.2357615 2.005333954 -0.291199 165 2 SH18582 18582 YNL044W_14_545264_545873_INTRON_25_103 3' exon 32.939861 165.632722 32.939861 133.692861 83.316361 1.920730293 -0.291756 47 27 SH19144 19144 YPL075W_16_412249_415357_INTRON_9_759 intron 27.376287 150.382972 27.376287 124.006685 75.691486 1.879047032 -0.291766 163 89 SH11794 11794 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5856 5873 1401.839081 2334.673393 1868.256237 3.271436441 -0.291853 181 41 SH10327 10327 RUF7 RUF7 246 263 25.695093 120.377866 73.0364795 1.863539831 -0.29262 203 41 SH18316 18316 YML085C_13_99400_97941_INTRON_26_141 5' exon 26.849538 148.963923 26.849538 123.114385 74.9819615 1.874956797 -0.292704 175 62 SH12825 12825 MT COX1 COX1ai1 22.123102 122.845262 22.123102 101.72216 61.922631 1.791849401 -0.293048 43 16 SH15846 15846 YDL075W_4_322225_322987_INTRON_58_478 intron 24.264936 140.045576 24.264936 116.78064 70.522788 1.848329473 -0.293607 75 78 SH5846 5846 snR35 snR35 416 433 22.316903 103.544969 62.930936 1.798864191 -0.293695 177 34 SH12861 12861 MT COX1 COX1ai1 25.4134 144.156657 25.4134 119.743257 72.5783285 1.860806962 -0.293702 185 59 SH11540 11540 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4586 4599 11619.5163 14999.94511 13309.73071 4.124169269 -0.293867 19 71 SH8918 8918 LSR1 / U2 RNA 3' 31.056301 130.591578 80.8239395 1.907540015 -0.29395 25 24 SH13449 13449 MT COX1 intronic 21.894851 120.684212 21.894851 99.789361 60.842106 1.784204238 -0.294164 12 96 SH14279 14279 MT VAR1 includes 5’ processing site VAR1 26.682361 148.582978 26.682361 122.900617 74.791489 1.87385218 -0.294213 101 94 SH20441 20441 YGL087C spliced 26.851664 123.222027 75.0368455 1.875274568 -0.294447 174 33 SH20111 20111 YDL064W spliced 177.153426 387.105318 282.129372 2.450448302 -0.294645 71 84 SH21243 21243 YOR312C spliced 24.472344 117.424922 70.948633 1.850944032 -0.294658 64 64 SH14586 14586 MT 21S rRNA intronic / sce1 27.438543 150.732848 27.438543 124.294305 75.866424 1.880049614 -0.294701 163 16 SH14297 14297 MT VAR1 includes 5’ processing site VAR1 22.069101 122.502341 22.069101 101.43324 61.7511705 1.790645194 -0.294945 134 61 SH5722 5722 snR34 snR34 531 549 21.694628 98.128947 59.9117875 1.777512277 -0.295376 92 42 SH212 212 Arg3 5' flank 21.812862 99.204637 60.5087495 1.781818178 -0.295604 35 56 SH699 699 Gln3 tRNA 26 42 124.468545 295.715396 210.0919705 2.322409454 -0.295743 200 48 SH11125 11125 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2511 2527 14817.54658 18598.8867 16708.21664 4.222930098 -0.295764 65 87 SH11787 11787 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5821 5836 402.919343 775.474188 589.1967655 2.770260354 -0.295958 22 98 SH10333 10333 RUF7 RUF7 276 293 24.346797 117.193423 70.77011 1.849849871 -0.296092 103 100 SH7289 7289 snR66 5' 25.525214 120.184912 72.855063 1.862459738 -0.296241 148 52 SH17738 17738 YKL156W_11_158616_159214_INTRON_4_353 intron 122.990419 415.254999 122.990419 293.26458 208.1274995 2.318329467 -0.296323 50 33 SH2751 2751 Pro5 3' flank 22.551274 106.006684 64.278979 1.80806897 -0.296637 95 95 SH14146 14146 MT COB intronic 23.899646 137.745573 23.899646 114.845927 69.3727865 1.841189139 -0.296749 68 93 SH16797 16797 YGL137W_7_249872_252741_INTRON_19_218 5' exon 26.942175 149.468785 26.942175 123.52661 75.2343925 1.876416418 -0.296803 152 62 SH11892 11892 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6346 6361 533.130303 990.988012 762.0591575 2.881988686 -0.29683 179 37 SH2892 2892 Pro8 5' flank 23.50245 112.474855 67.9886525 1.832436434 -0.297157 29 30 SH7798 7798 snoRNA cluster1 snR75 26.899695 149.377417 26.899695 123.477722 75.1887085 1.876152625 -0.297274 174 16 SH2274 2274 Phe2 5' flank 22.281778 103.6446 62.963189 1.799086716 -0.297642 143 43 SH14479 14479 MT 21S rRNA 21S rRNA3 75.751948 284.569042 75.751948 209.817094 142.784521 2.154681129 -0.297801 94 31 SH8266 8266 snoRNA cluster4 snR67 30.858326 160.358202 30.858326 130.499876 80.679101 1.90676105 -0.2979 58 15 SH19278 19278 YPL143W_16_282121_282969_INTRON_20_544 intron 22.832617 130.358314 22.832617 108.525697 65.679157 1.81742757 -0.29818 9 80 SH1082 1082 Gly3 3' flank 29.159126 127.602678 78.380902 1.894210257 -0.299339 101 25 SH14715 14715 MT tRNA cys; tRNA his 5' 21.552188 117.868162 21.552188 97.315974 59.434081 1.774035552 -0.300135 66 22 SH3232 3232 Thr1 tRNA 16 28 22.411754 105.11609 63.763922 1.804575022 -0.300271 14 5 SH11645 11645 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5111 5124 17078.25302 21139.71819 19108.9856 4.281237633 -0.300575 145 92 SH13340 13340 MT COX1 COX1-ai5a 22.011722 122.532987 22.011722 101.521265 61.7664935 1.790752947 -0.300765 185 43 SH2487 2487 Pro1 5' flank 23.801962 114.630704 69.216333 1.840208587 -0.300956 55 83 SH2042 2042 Lys3 3' flank 24.533364 117.975318 71.254341 1.852811328 -0.300974 125 43 SH18454 18454 YMR143W_13_551927_552902_INTRON_25_568 intron 28.106148 153.00348 28.106148 125.897332 77.00174 1.886500539 -0.301563 156 57 SH16936 16936 YGR027C_7_534779_534126_INTRON_1_312 intron 126.3026 425.370245 126.3026 300.067645 213.1851225 2.328756893 -0.30204 24 94 SH5803 5803 snR35 snR35 201 219 63.83608 189.045498 126.440789 2.101887197 -0.302324 7 37 SH2629 2629 Pro3 96-103 + 3' flank 96 25.778016 121.220641 73.4993285 1.866283371 -0.302537 113 18 SH11974 11974 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6756 6771 24833.26642 29428.21482 27130.74062 4.433461649 -0.302685 32 93 SH7749 7749 snoRNA cluster1 intergenic/snR76 41.557767 190.388429 41.557767 149.830662 95.6942145 1.980885682 -0.302733 14 100 SH3725 3725 Val3 3' flank 29.100839 127.713746 78.4072925 1.894356457 -0.302774 141 56 SH8261 8261 snoRNA cluster4 5'/snR67 22.618494 128.930225 22.618494 107.311731 64.9651125 1.812680195 -0.302877 193 56 SH10985 10985 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1811 1828 8176.076553 11079.76114 9627.918847 3.983532421 -0.303033 78 4 SH10002 10002 RUF5-1 3' 22.877267 109.210745 66.044006 1.819833408 -0.303053 76 99 SH3821 3821 RNaseP RNaseP 71 87 35.294725 138.720028 87.0073765 1.939556074 -0.303119 191 59 SH10446 10446 RUF8 RUF8 156 174 23.292461 111.732452 67.5124565 1.82938391 -0.303174 7 13 SH2433 2433 Phe5 5' flank 25.042635 119.415703 72.229169 1.858712618 -0.30326 22 82 SH7190 7190 snR64 snR64 16 30 3997.767644 5914.993674 4956.380659 3.695164654 -0.303274 141 15 SH2896 2896 Pro8 tRNA 1 13 1090.992292 1879.078652 1485.035472 3.171736827 -0.30336 19 23 SH10412 10412 RUF8 5' - 5 -14 5 28.494743 126.707084 77.6009135 1.889866834 -0.303604 59 97 SH12 12 Ala1 5' flank 27.921491 125.696969 76.80923 1.885413411 -0.303655 177 71 SH2109 2109 Met1 5' flank 23.973212 115.924722 69.948967 1.844781305 -0.303715 105 41 SH5363 5363 snR30 3' 21.956516 101.333683 61.6450995 1.789898558 -0.30376 10 6 SH15843 15843 YDL075W_4_322225_322987_INTRON_58_478 intron 22.732803 130.13443 22.732803 108.401627 65.567215 1.816686737 -0.30378 157 22 SH815 815 Glu1 3' flank 22.381759 105.258699 63.820229 1.804958358 -0.304151 2 12 SH18535 18535 YMR230W_13_732413_733140_INTRON_53_462 intron 24.673599 142.218698 24.673599 118.545099 71.609349 1.854969726 -0.304343 44 70 SH3624 3624 Val1 3' flank 22.531159 106.669282 64.6002205 1.810234 -0.304415 68 68 SH11511 11511 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4441 4458 5668.626274 8040.468646 6854.54746 3.835978788 -0.304449 179 53 SH9927 9927 RUF5-1 RUF5-1 441 458 22.695449 108.209387 65.452418 1.815925695 -0.304507 169 15 SH13100 13100 MT COX1 COX1ai3 23.962951 138.905957 23.962951 115.943006 69.9529785 1.844806211 -0.304605 92 11 SH11796 11796 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5866 5884 3230.350052 4912.129473 4071.239763 3.60972668 -0.304839 24 63 SH642 642 Gln2 5' flank - tRNA15 5' flank 15 122.665232 294.204433 208.4348325 2.318970298 -0.304886 69 86 SH10112 10112 RUF6 RUF6 406 423 21.592348 98.169378 59.880863 1.777288051 -0.304888 84 58 SH4076 4076 SRP RNA SRP RNA 271 287 293.730101 593.262605 443.496353 2.646890053 -0.305311 52 41 SH14051 14051 MT COB Cytbi4 22.243876 125.459084 22.243876 104.215208 63.229542 1.800920036 -0.306247 25 31 SH11642 11642 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5096 5109 869.534013 1537.243579 1203.388796 3.080405964 -0.306839 16 70 SH16152 16152 YDR092W_4_629869_630598_INTRON_31_298 3' exon 24.990126 143.501274 24.990126 119.511148 72.250637 1.85884168 -0.306867 142 72 SH11962 11962 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6696 6709 204.849864 438.435717 321.6427905 2.507373821 -0.307445 100 95 SH21869 21869 copy of SH18599 28.755792 127.423494 78.089643 1.892593437 -0.307814 185 99 SH18999 18999 YOR122C_15_552886_552297_INTRON_14_222 intron 24.419055 141.553853 24.419055 118.134798 71.2769265 1.852948964 -0.308196 138 82 SH16083 16083 YDR025W_4_491510_492319_INTRON_46_384 intron 22.151283 124.740139 22.151283 103.588856 62.8700695 1.79844394 -0.308341 9 60 SH4062 4062 SRP RNA SRP RNA 201 218 65.749305 193.150519 129.449912 2.11210176 -0.308427 107 79 SH15541 15541 YBR078W_2_393082_394818_INTRON_59_388 intron 22.030024 123.540213 22.030024 102.510189 62.2701065 1.794279608 -0.308626 102 10 SH5689 5689 snR34 snR34 366 382 103.958329 261.939422 182.9488755 2.262329744 -0.308821 14 61 SH18536 18536 YMR230W_13_732413_733140_INTRON_53_462 intron 24.411231 141.582553 24.411231 118.171322 71.2912765 1.853036391 -0.309099 115 64 SH9197 9197 snR7 U5 RNA 3' 23.622231 114.28051 68.9513705 1.838542903 -0.309267 107 57 SH11935 11935 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6561 6578 248.82291 516.086995 382.4549525 2.582580289 -0.309544 131 50 SH11799 11799 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5881 5896 23394.42822 28055.42956 25724.92889 4.410354183 -0.309976 163 49 SH20136 20136 YDL083C spliced 22.224242 104.438301 63.3312715 1.801618207 -0.310018 108 37 SH15045 15045 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " ORF1exon1 23.378176 135.262627 23.378176 112.884451 68.1313135 1.833346762 -0.310331 42 101 SH15454 15454 YBL087C_2_60732_59815_INTRON_43_546 intron 29.518436 157.436646 29.518436 128.91821 79.218323 1.898825644 -0.310366 135 54 SH13772 13772 MT COB intronic 22.094725 124.422651 22.094725 103.327926 62.7113255 1.79734598 -0.310767 77 79 SH20683 20683 YIL111W spliced 23.262411 112.217488 67.7399495 1.830844869 -0.310775 39 9 SH11801 11801 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5891 5908 21079.6831 25611.68601 23345.68456 4.368206613 -0.310818 207 88 SH18299 18299 YML073C_13_124172_123227_INTRON_16_430 intron 60.785647 244.304053 60.785647 184.518406 122.6520265 2.088674728 -0.310933 88 99 SH21613 21613 copy of SH7094 34.706116 138.228787 86.4674515 1.936852659 -0.311169 131 46 SH9330 9330 RUF1 RUF1 226 242 430.826427 830.288746 630.5575865 2.799724755 -0.311369 149 14 SH2904 2904 Pro8 tRNA 41 55 28.933812 127.963835 78.4488235 1.894586435 -0.311523 68 6 SH10755 10755 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 661 678 103.824474 262.132922 182.978698 2.262400533 -0.311606 123 70 SH7012 7012 snR60 3' 3766.351663 5644.733598 4705.542631 3.672609712 -0.311725 74 16 SH11815 11815 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5961 5976 1112.030675 1922.349583 1517.190129 3.181040008 -0.311903 26 56 SH11835 11835 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6061 6074 1117.942496 1931.839998 1524.891247 3.183238872 -0.312154 117 60 SH11107 11107 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2421 2434 23934.29246 28665.83143 26300.06194 4.419956771 -0.312198 110 32 SH19912 19912 YAL003W spliced 22.969117 110.597132 66.7831245 1.824666734 -0.312676 119 43 SH10684 10684 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 306 322 21.772618 100.600974 61.186796 1.786657712 -0.312757 13 28 SH11915 11915 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6461 6478 22728.22075 27412.99786 25070.6093 4.399164889 -0.313441 52 71 SH7767 7767 snoRNA cluster1 snR76 28.931601 156.014167 28.931601 128.082566 78.5070835 1.894908844 -0.313504 195 79 SH8644 8644 snR19 / U1 RNA 3' 21.589003 99.049579 60.319291 1.780456228 -0.313789 155 7 SH10331 10331 RUF7 RUF7 266 283 22.941782 110.536233 66.7390075 1.824379744 -0.313893 18 43 SH6901 6901 snR56 3' 23.393787 113.299504 68.3466455 1.834717204 -0.313933 93 89 SH14862 14862 MT tRNA Ser2; tRNA Arg2 tRNA Arg2 22.42601 128.207435 22.42601 106.781425 64.6037175 1.810257509 -0.314377 214 39 SH5561 5561 snR33 snR33 91 107 36.258648 141.295686 88.777167 1.948301282 -0.315077 87 68 SH11548 11548 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4626 4641 1780.524776 2931.32641 2355.925593 3.37216157 -0.315403 195 47 SH15449 15449 YBL087C_2_60732_59815_INTRON_43_546 intron 24.203215 141.236609 24.203215 118.033394 71.1183045 1.851981394 -0.31547 177 99 SH14173 14173 MT COB intronic 24.359383 141.806691 24.359383 118.447308 71.4033455 1.85371856 -0.315623 139 23 SH10415 10415 RUF8 RUF8 1 18 22.988442 111.011398 66.99992 1.826074284 -0.316087 201 35 SH6659 6659 snR48 3' 40.112533 148.27174 94.1921365 1.974014648 -0.316092 16 55 SH10787 10787 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 821 840 1621.9404 2700.922993 2161.431697 3.334741516 -0.316383 12 14 SH5637 5637 snR34 snR34 106 122 25.488623 121.3967 73.4426615 1.865948407 -0.316577 66 64 SH10875 10875 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1261 1274 2428.238605 3854.292145 3141.265375 3.497104627 -0.316697 17 30 SH19170 19170 YPL079W_16_406631_407534_INTRON_12_432 intron 22.340653 127.620007 22.340653 106.279354 64.3100035 1.808278533 -0.317069 2 54 SH5523 5523 snR33 5' 32.390004 134.401183 83.3955935 1.921143104 -0.317295 62 84 SH21038 21038 YMR133W spliced 22.01997 103.342903 62.6814365 1.797138941 -0.317384 123 60 SH10901 10901 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1391 1410 14214.45389 18193.82664 16204.14027 4.209625994 -0.318072 93 47 SH14791 14791 "MT tRNAs (Lys, Arg1, Gly)" 5' 27.971139 153.66109 27.971139 126.689951 77.330545 1.888351071 -0.318478 134 67 SH17244 17244 YHR079C-A_8_262554_262193_INTRON_114_199 3' exon 22.960603 133.015002 22.960603 111.054399 67.007501 1.826123422 -0.318532 2 31 SH9250 9250 snR6 / U6 RNA 3' 32.251184 134.245172 83.248178 1.920374737 -0.318539 177 12 SH11783 11783 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5801 5814 1596.82421 2668.037138 2132.430674 3.328874921 -0.318799 51 81 SH1632 1632 Leu5 tRNA-exon/intron 26 42 29.01231 128.552472 78.782391 1.896429157 -0.318802 192 34 SH8177 8177 snoRNA cluster 3; snR70 112.839883 391.214701 112.839883 279.374818 196.1073505 2.292493872 -0.319374 118 85 SH11545 11545 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4611 4626 3927.757839 5886.793961 4907.2759 3.690840476 -0.319738 77 47 SH11958 11958 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6676 6689 4001.377152 5983.702206 4992.539679 3.698321525 -0.319816 209 101 SH11150 11150 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2636 2654 26546.98325 31573.04386 29060.01356 4.463295813 -0.320531 50 38 SH12166 12166 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7716 7733 1088.542369 1896.638747 1492.590558 3.17394069 -0.320571 138 99 SH10492 10492 RUF8 RUF8 386 403 33.864576 137.370944 85.61776 1.932563861 -0.320836 72 10 SH9635 9635 RUF4 5' 23.092469 112.095708 67.5940885 1.829908716 -0.321202 173 25 SH367 367 Asn1 5' flank 22.328173 106.618228 64.4732005 1.809379229 -0.32124 142 16 SH11770 11770 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5736 5753 1522.434683 2562.078777 2042.25673 3.310110336 -0.321561 127 83 SH11797 11797 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5871 5889 1959.056789 3203.821873 2581.439331 3.411861923 -0.322544 25 23 SH1475 1475 Leu2 3' flank 21.81636 102.065891 61.9411255 1.791979092 -0.323013 213 30 SH8072 8072 snoRNA cluster 2 snR61 61.307199 247.002089 61.307199 186.69489 124.0010445 2.093425343 -0.323171 208 89 SH19616 19616 RNA14 1.1 61.752031 187.492889 124.62246 2.09559632 -0.323231 158 64 SH11582 11582 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4796 4809 139.559868 327.450644 233.505256 2.368296661 -0.323354 4 94 SH18696 18696 YNL130C_14_381156_379555_INTRON_30_470 5' exon 54.630772 228.395701 54.630772 174.764929 114.6978505 2.059555279 -0.323628 205 48 SH15343 15343 YBL018C_2_186436_185960_INTRON_48_122 5' exon 84.802008 313.329482 84.802008 229.527474 157.164741 2.196355121 -0.323937 44 64 SH17806 17806 YKL190W_11_82949_83552_INTRON_53_128 3' exon 69.667714 270.663918 69.667714 201.996204 135.831959 2.133001964 -0.324491 10 70 SH13697 13697 MT ORF 5 (hypothetical) 3' 22.784354 132.329034 22.784354 110.54468 66.664517 1.823894737 -0.325082 66 70 SH14174 14174 MT COB intronic 21.73066 122.292635 21.73066 101.561975 61.6463175 1.789907139 -0.325709 174 18 SH13978 13978 MT COB intronic 22.15431 126.679091 22.15431 105.524781 63.8395455 1.805089786 -0.326128 60 5 SH1039 1039 Gly3 5' flank 23.335147 114.03081 68.6829785 1.83684912 -0.326176 20 51 SH12885 12885 MT COX1 COX1ai1 22.731358 132.056587 22.731358 110.325229 66.5282935 1.823006384 -0.3263 103 87 SH11063 11063 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2201 2219 8666.932928 11849.19822 10258.06557 4.011065471 -0.327487 211 61 SH20897 20897 YLR306W spliced 24.17829 118.740411 71.4593505 1.854059065 -0.327753 111 28 SH5988 5988 snR36 3' 20.98414 94.91396 57.94905 1.763046321 -0.327784 8 13 SH11673 11673 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5251 5269 12751.85344 16641.91834 14696.88589 4.167225322 -0.32781 92 45 SH14 14 Ala1 5' flank 21.825143 102.656105 62.240624 1.794073938 -0.327864 22 23 SH2903 2903 Pro8 tRNA 36 48 26.114831 123.716163 74.915497 1.874571665 -0.327926 107 65 SH17525 17525 YJL136C_10_156971_156248_INTRON_25_484 intron 22.761136 132.41124 22.761136 110.650104 66.70562 1.824162425 -0.327939 167 68 SH16039 16039 YDL191W_4_117665_118518_INTRON_4_494 intron 2273.836605 5937.948168 2273.836605 3665.111563 2969.474084 3.472679539 -0.327967 88 44 SH11127 11127 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2521 2534 5241.492342 7623.943924 6432.718133 3.808394522 -0.328325 203 58 SH1894 1894 Lys1 5' flank 28.738422 128.663958 78.70119 1.895981299 -0.328345 5 83 SH7277 7277 snR65 3' 24.904162 120.675547 72.7898545 1.862070851 -0.328584 88 75 SH16462 16462 YER093C-A_5_348396_347908_INTRON_125_199 exon/intron 20.783673 112.954658 20.783673 93.170985 56.977329 1.755702086 -0.328589 21 102 SH10048 10048 RUF6 RUF6 86 103 47.392371 162.324356 104.8583635 2.020603075 -0.32924 204 33 SH11978 11978 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6776 6792 749.867929 1367.81272 1058.840325 3.024830472 -0.329644 84 90 SH20296 20296 YEL012W spliced 36.857472 143.469993 90.1637325 1.955031882 -0.330009 190 7 SH2082 2082 Lys4 tRNA 76 88 28.830465 128.96853 78.8994975 1.897074237 -0.330623 25 77 SH10649 10649 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 131 144 15889.37148 20231.78371 18060.5776 4.256731635 -0.330634 114 11 SH11054 11054 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2156 2169 21975.76781 26920.1385 24447.95315 4.388242505 -0.331066 93 9 SH2330 2330 Phe3 5' flank 22.157993 106.227132 64.1925625 1.807484713 -0.332276 89 54 SH11043 11043 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2101 2118 11182.56206 14871.52757 13027.04482 4.114845907 -0.332412 10 26 SH9653 9653 RUF4 RUF4 41 57 23.626553 116.417883 70.022218 1.845235863 -0.332589 175 17 SH10019 10019 RUF6 5' 704.135526 1296.281179 1000.208353 3.000090477 -0.332752 111 30 SH19460 19460 CYC1 20.978772 95.384792 58.181782 1.764787019 -0.333007 156 20 SH15428 15428 YBL072C_2_89435_88518_INTRON_1_308 intron 60.956805 247.110459 60.956805 187.153654 124.0552295 2.093615077 -0.333745 197 60 SH10924 10924 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1506 1524 711.234689 1308.796752 1010.015721 3.004328133 -0.333857 70 68 SH13408 13408 MT COX1 intronic 34.954132 174.29889 34.954132 140.344758 87.649445 1.94274917 -0.334968 198 42 SH1134 1134 Gly4 3' flank 960.586044 1713.791062 1337.188553 3.12619265 -0.336872 197 83 SH2928 2928 Pro8 3' flank 26.156014 124.41324 75.284627 1.876706303 -0.336933 49 6 SH16346 16346 YDR500C_4_1450856_1450201_INTRON_8_396 intron 23.195715 136.34637 23.195715 114.150655 68.673185 1.83678719 -0.337169 5 89 SH10956 10956 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1666 1683 955.225645 1705.737488 1330.481567 3.124008862 -0.337327 214 9 SH19175 19175 YPL079W_16_406631_407534_INTRON_12_432 intron 34.354592 172.781271 34.354592 139.426679 86.8906355 1.938972974 -0.337459 134 49 SH20234 20234 YDR139C spliced 21.890766 104.285874 63.08832 1.799948963 -0.337481 2 75 SH7696 7696 snoRNA cluster1 intergenic 31.774365 165.443426 31.774365 134.669061 83.221713 1.920236651 -0.337523 60 104 SH2757 2757 Pro5 3' flank 29.076334 129.846279 79.4613065 1.900155701 -0.337713 121 38 SH10902 10902 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1396 1414 26548.79548 31930.52933 29239.66241 4.465972354 -0.33772 206 37 SH15961 15961 YDL130W_4_229906_230527_INTRON_115_415 intron 24.411408 143.418936 24.411408 120.007528 72.209468 1.858594145 -0.33814 36 46 SH14991 14991 " MT COX 2 and hypothetical ORF1 (3 exons, 2 introns) " COX2 22.163159 128.176865 22.163159 107.013706 64.5884325 1.810154745 -0.339022 2 95 SH6282 6282 snR42 snR42 191 209 32.428982 135.96537 84.197176 1.925297525 -0.33929 127 10 SH11743 11743 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5601 5618 4458.101863 6668.361288 5563.231576 3.745327138 -0.3407 157 96 SH189 189 Arg2 61-73 61 73 13778.90879 17972.86833 15875.88856 4.200738042 -0.341335 124 2 SH10354 10354 RUF7 RUF7 381 395 36.681679 144.018387 90.350033 1.955928316 -0.341906 80 73 SH11614 11614 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4956 4971 1582.023947 2686.89973 2134.461839 3.329288395 -0.342199 90 60 SH1087 1087 Gly4 5' flank 30.178374 132.182437 81.1804055 1.909451216 -0.342839 169 52 SH9122 9122 snR14 / U4 RNA 3' 53.365714 174.382981 113.8743475 2.056425901 -0.343833 88 14 SH20169 20169 YDL136W spliced 21.717026 103.378284 62.547655 1.796211032 -0.344186 186 50 SH19150 19150 YPL075W_16_412249_415357_INTRON_9_759 intron 29.84258 160.516093 29.84258 131.673513 80.7580465 1.907185805 -0.344379 87 100 SH980 980 Gly1 3' flank 30.828498 133.505683 82.1670905 1.914697909 -0.345244 138 41 SH16365 16365 YEL012W_5_131772_132551_INTRON_6_128 intron 21.915082 126.451174 21.915082 105.536092 63.725587 1.804313845 -0.346976 80 17 SH13744 13744 MT COB Exon1 21.945393 126.798405 21.945393 105.853012 63.8992025 1.805495438 -0.347258 91 18 SH10955 10955 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1661 1676 4154.511174 6295.590651 5225.050913 3.718090527 -0.347323 172 44 SH10205 10205 RUF6 RUF6 871 893 22.728363 112.150815 67.439589 1.828914915 -0.34743 109 40 SH2667 2667 Pro4 tRNA 1 13 1083.503417 1922.466386 1502.984902 3.176954618 -0.347469 181 97 SH1880 1880 Leu9 3' flank 13783.639 18076.58255 15930.11077 4.202218796 -0.349705 87 62 SH13175 13175 MT COX1 Exon4 22.177964 129.521861 22.177964 108.343897 65.2609305 1.814653262 -0.349787 84 24 SH9555 9555 RUF3 RUF3 161 173 4211.594888 6382.457859 5297.026374 3.724032135 -0.349997 63 12 SH7188 7188 snR64 snR64 6 22 12065.27739 16091.91516 14078.59628 4.148559355 -0.350936 127 94 SH2721 2721 Pro5 5' flank - tRNA2 2 34.460162 140.711221 87.5856915 1.942433163 -0.352931 191 80 SH8277 8277 snoRNA cluster4 snR67/intergenic 21.888136 126.822456 21.888136 105.93432 63.911228 1.805577162 -0.352998 59 103 SH13157 13157 MT COX1 intronic 27.292516 153.902376 27.292516 127.60986 77.451188 1.889028084 -0.35351 54 93 SH1085 1085 Gly4 5' flank 36.041712 143.683474 89.862593 1.953578946 -0.35353 64 56 SH10833 10833 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1051 1069 4006.070927 6124.435551 5065.253239 3.704601163 -0.35398 65 12 SH10141 10141 RUF6 RUF6 551 568 2269.876056 3725.433901 2997.654979 3.476781645 -0.355401 189 62 SH13916 13916 MT COB Cytbi3 22.617595 133.849571 22.617595 112.231976 67.4247855 1.828819573 -0.356222 202 55 SH2839 2839 Pro7 tRNA 1 13 720.732656 1344.761156 1032.746906 3.013993903 -0.357352 2 90 SH10993 10993 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1851 1871 8017.500163 11290.23409 9653.867124 3.984701317 -0.358367 109 97 SH18266 18266 YML056C_13_164176_162194_INTRON_461_868 intron 26.043254 150.651657 26.043254 125.608403 75.8258285 1.879817164 -0.359271 46 86 SH603 603 Gln1 tRNA 56 68 6190.79649 9004.085883 7597.441187 3.880667347 -0.359562 20 13 SH11860 11860 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6186 6202 17873.57284 22874.7029 20374.13787 4.309079241 -0.360175 96 90 SH10322 10322 RUF7 RUF7 221 238 24.078147 120.54401 72.3110785 1.859204839 -0.36031 154 64 SH14951 14951 MT tRNA Met tRNA 22.721419 135.21652 22.721419 113.495101 68.10826 1.833199785 -0.363108 153 42 SH4075 4075 SRP RNA SRP RNA 266 280 12943.4832 17261.50334 15102.49327 4.179048651 -0.36379 70 80 SH11677 11677 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5271 5287 5450.887204 8079.39538 6765.141292 3.830276871 -0.364687 30 95 SH20487 20487 YGL232W spliced 39.297031 150.584251 94.940641 1.97745216 -0.365555 154 39 SH11678 11678 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5276 5291 1545.736921 2672.862122 2109.299522 3.324138254 -0.365643 62 60 SH20431 20431 YGL033W spliced 22.220615 110.541588 66.3811015 1.822044455 -0.36569 110 8 SH20365 20365 YER133W spliced 28.055396 129.81671 78.936053 1.897275407 -0.366448 143 12 SH18190 18190 YML024W_13_225889_226697_INTRON_4_401 intron 22.595036 134.652495 22.595036 113.057459 67.8262475 1.83139779 -0.367169 70 91 SH12051 12051 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7141 7154 26.436083 126.986175 76.711129 1.884858375 -0.369428 54 82 SH12315 12315 5S rRNA ch12 458431-459850 incl. intervening sequence from 35S 5'flank from 35S coding 32.392599 169.533628 32.392599 138.141029 85.266814 1.930780036 -0.371849 179 83 SH11976 11976 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6766 6782 3686.969178 5764.149023 4725.559101 3.674453199 -0.372625 70 21 SH10479 10479 RUF8 RUF8 321 338 20.732845 97.33697 59.0349075 1.771108887 -0.375126 16 88 SH15283 15283 MT 9S rRNA 9S 31.677603 167.694384 31.677603 137.016781 84.347192 1.926070629 -0.375406 154 51 SH11048 11048 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2126 2143 565.835754 1099.531317 832.6835355 2.920479978 -0.3761 48 54 SH16687 16687 YGL030W_7_439087_439634_INTRON_4_233 intron 24.81298 147.394019 24.81298 123.581039 74.1970095 1.870386401 -0.377079 36 43 SH5055 5055 snR10 3' 22.297803 112.125417 67.21161 1.827444299 -0.37795 67 93 SH2693 2693 Pro4 3' flank 27.693184 129.966472 78.829828 1.896690579 -0.37945 113 87 SH18402 18402 YMR125W_13_517538_520445_INTRON_26_347 intron 2061.086168 5542.586566 2061.086168 3482.500398 2771.793283 3.442760838 -0.382017 135 28 SH17794 17794 YKL186C_11_93537_92746_INTRON_71_233 intron 356.036171 1091.84352 356.036171 736.807349 546.42176 2.737527986 -0.382881 17 44 SH11108 11108 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2426 2439 18038.03467 23403.85687 20720.94577 4.316409574 -0.382907 47 43 SH18164 18164 YLR448W_12_1028848_1029762_INTRON_16_399 intron 47.781134 214.524542 47.781134 167.743408 107.762271 2.032466735 -0.382973 23 7 SH11638 11638 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5076 5094 15423.06372 20433.09084 17928.07728 4.253533716 -0.386055 163 38 SH10903 10903 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1401 1421 9741.55246 13646.09857 11693.82551 4.067956609 -0.38658 39 51 SH8071 8071 snoRNA cluster 2 snR61 592.852804 1745.421446 592.852804 1153.568642 873.210723 2.94111906 -0.38673 150 11 SH843 843 Glu2 5' flank - tRNA2 2 25.012647 124.793557 74.903102 1.874499804 -0.387446 99 66 SH11970 11970 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6736 6756 1260.322607 2260.720384 1760.521496 3.245641332 -0.387742 198 88 SH11143 11143 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2601 2617 781.574394 1474.35884 1127.966617 3.052296247 -0.388043 178 61 SH14419 14419 MT 21S rRNA 21S rRNA3 286.756922 898.798691 286.756922 613.041769 449.8993455 2.653115361 -0.388212 156 75 SH12162 12162 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7696 7711 5973.692658 8894.219315 7433.955987 3.871219985 -0.388843 213 31 SH9994 9994 RUF5-1 3' 29.562098 134.072792 81.817445 1.912845913 -0.389228 139 63 SH14042 14042 MT COB Cytbi4 22.218531 134.058363 22.218531 112.839832 67.5291815 1.829491486 -0.391782 36 76 SH9328 9328 RUF1 RUF1 216 232 44.79736 162.970444 103.883902 2.016548254 -0.391822 124 104 SH6374 6374 snR43 snR43 111 123 24.819667 124.658858 74.7392625 1.873548808 -0.393168 39 72 SH1400 1400 Leu1 tRNA-intron/exon 71 87 160.242325 380.252355 270.24734 2.431761428 -0.393373 88 18 SH5690 5690 snR34 snR34 371 387 265.582572 575.929601 420.7560865 2.624030407 -0.393745 75 75 SH11599 11599 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4881 4898 16647.30599 22004.88031 19326.09315 4.286144068 -0.396657 167 47 SH11746 11746 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5616 5634 1129.837307 2061.840057 1595.838682 3.202988988 -0.396725 24 101 SH6766 6766 snR50 snR50 6 22 9806.926501 13827.23037 11817.07844 4.072510118 -0.397801 181 58 SH11755 11755 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5661 5678 1111.041821 2036.063775 1573.552798 3.19688132 -0.400496 45 91 SH9801 9801 RUF4 781-788 + 3' 781 26.690443 129.569353 78.129898 1.892817257 -0.403255 7 66 SH5784 5784 snR35 snR35 106 125 279.75618 607.127422 443.441801 2.646836629 -0.406189 119 87 SH11676 11676 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5266 5279 170.620981 402.907055 286.764018 2.457524657 -0.406976 113 84 SH11380 11380 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3786 3802 12073.42648 16715.9709 14394.69869 4.158202579 -0.408437 70 42 SH11952 11952 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6646 6661 19740.52018 25783.51858 22762.01938 4.357210789 -0.409727 95 72 SH19941 19941 YBL027W spliced 21.059383 104.143521 62.601452 1.796584407 -0.410128 98 94 SH11508 11508 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4426 4444 4855.9084 7528.214308 6192.061354 3.791835251 -0.411921 114 48 SH14691 14691 MT 21S rRNA 3' 240.210069 774.064986 240.210069 534.854917 387.532493 2.588308122 -0.41196 203 56 SH20195 20195 YDR005C spliced 24.257605 124.491332 74.3744685 1.871423875 -0.413575 186 23 SH11558 11558 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4676 4691 30180.01191 37559.22358 33869.61774 4.529810295 -0.41378 35 48 SH5018 5018 snR10 snR10 121 137 503.074889 1016.693327 759.884108 2.880747362 -0.414416 94 38 SH11971 11971 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6741 6760 1535.220035 2746.89263 2141.056333 3.330628094 -0.416691 95 62 SH853 853 Glu2 tRNA 31 43 86.365246 245.356697 165.8609715 2.219744205 -0.417236 88 101 SH11800 11800 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5886 5904 6152.420588 9300.162953 7726.291771 3.887971105 -0.417666 54 80 SH12800 12800 MT COX1 COX1ai1 26.688491 156.205479 26.688491 130.516988 78.6027395 1.895437683 -0.418387 28 104 SH14355 14355 MT ORF9 and ORF10 (hypothetical) 5' / ORF9 28.559507 161.687546 28.559507 134.128039 81.343773 1.910324313 -0.419125 116 49 SH1167 1167 His1 tRNA 56 71 7506.350609 11100.18938 9303.269995 3.968635625 -0.421177 3 13 SH11789 11789 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5831 5846 25943.8919 33068.1199 29506.0059 4.469910425 -0.422577 163 25 SH11671 11671 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5241 5258 17221.77055 23086.57299 20154.17177 4.304364956 -0.424496 52 94 SH12829 12829 MT COX1 COX1ai1 27.090224 157.866149 27.090224 131.775925 79.4330745 1.900001372 -0.426034 114 69 SH11570 11570 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4736 4752 5019.555149 7838.30812 6428.931635 3.808138807 -0.429282 176 30 SH11697 11697 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5371 5389 16965.38781 22893.84107 19929.61444 4.299498897 -0.431885 114 81 SH10951 10951 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1641 1661 2115.627291 3683.056537 2899.341914 3.462299434 -0.432762 85 63 SH11465 11465 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4211 4229 20272.39183 26867.37223 23569.88203 4.372357409 -0.43702 198 93 SH11761 11761 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5691 5708 779.764153 1520.960529 1150.362341 3.060834656 -0.438722 160 91 SH11510 11510 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4436 4454 13564.6645 18897.40942 16231.03696 4.210346267 -0.439499 200 76 SH11763 11763 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5701 5718 1029.225356 1955.617603 1492.42148 3.173891491 -0.443603 87 40 SH20858 20858 YLR078C spliced 3337.373915 5532.082379 4434.728147 3.646867002 -0.443689 131 71 SH11082 11082 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2296 2313 13042.61497 18315.05557 15678.83527 4.195313797 -0.444439 109 79 SH11747 11747 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5621 5638 2639.375607 4521.823767 3580.599687 3.553955769 -0.449833 165 104 SH21441 21441 TH213 - control oligo; WTP_223 27.296111 133.758103 80.527107 1.905942097 -0.450728 94 40 SH10806 10806 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 916 934 3701.214292 6085.425422 4893.319857 3.689603605 -0.450831 196 55 SH137 137 Arg1 61-73 61 73 11587.09533 16577.58276 14082.33904 4.148674796 -0.451184 189 75 SH10987 10987 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1821 1838 1342.797947 2495.961837 1919.379892 3.283160941 -0.452262 65 99 SH11044 11044 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2106 2124 10955.89718 15804.97165 13380.43442 4.126470214 -0.453526 38 39 SH11640 11640 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5086 5102 10499.94354 15239.55995 12869.75175 4.10957017 -0.454973 170 41 SH11017 11017 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1971 1989 2689.944466 4614.517969 3652.231218 3.562558264 -0.455456 169 30 SH11874 11874 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6256 6272 23031.7398 30454.30717 26743.02348 4.427210506 -0.457002 68 26 SH11732 11732 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5546 5561 6691.373145 10291.31601 8491.344578 3.928976465 -0.459993 133 94 SH11661 11661 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5191 5204 302.476221 673.181096 487.8286585 2.68826731 -0.461665 159 89 SH11466 11466 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4216 4234 4463.362545 7223.314636 5843.338591 3.766661052 -0.462004 96 73 SH11388 11388 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3826 3845 12393.48264 17742.38542 15067.93403 4.17805371 -0.464602 149 44 SH12111 12111 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7441 7454 3694.573058 6139.113962 4916.84351 3.691686386 -0.466758 27 56 SH10959 10959 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1681 1701 9797.203 14453.36829 12125.28565 4.083691978 -0.467149 121 69 SH11404 11404 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3906 3919 14243.46704 20107.1338 17175.30042 4.234904342 -0.468814 128 97 SH13219 13219 MT COX1 COX1-ai4 27.216299 161.237418 27.216299 135.021119 81.118709 1.90912103 -0.472559 6 97 SH16329 16329 YDR471W_4_1401759_1402553_INTRON_32_415 intron 26.284103 158.63339 26.284103 133.349287 79.816695 1.902093741 -0.475266 120 50 SH11840 11840 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6086 6101 532.97899 1113.757524 823.368257 2.91559412 -0.476619 131 47 SH12042 12042 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7096 7112 5632.840846 8955.394883 7294.117865 3.862972777 -0.478613 212 10 SH8293 8293 snoRNA cluster4 intergenic 42.870606 208.835653 42.870606 166.965047 104.9178265 2.020849285 -0.48098 165 22 SH11057 11057 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2171 2188 10065.5741 14935.21442 12500.39426 4.096923711 -0.481029 113 50 SH11586 11586 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4816 4829 23394.54591 31378.11474 27386.33033 4.437533842 -0.481757 138 76 SH20857 20857 YLR078C spliced 4570.25567 7481.923149 6026.08941 3.780035571 -0.484178 114 78 SH7756 7756 snoRNA cluster1 snR76 4922.570459 12907.26078 4922.570459 7985.690319 6454.130389 3.809837735 -0.484222 27 94 SH20758 20758 YJR094W-A spliced 1039.162751 2028.35043 1533.756591 3.185756442 -0.486019 181 24 SH11931 11931 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6541 6558 277.173723 634.248426 455.7110745 2.658689583 -0.486314 192 63 SH21406 21406 Ser3 spliced 1315.527806 2510.787878 1913.157842 3.281750802 -0.489206 162 73 SH16403 16403 YER056C-A_5_270183_269421_INTRON_38_434 intron 7737.595894 19702.75062 7737.595894 11966.15472 9851.875309 3.993518907 -0.495628 33 104 SH6036 6036 snR37 snR37 96 111 2276.227458 4091.873431 3184.050445 3.50297994 -0.495802 153 75 SH4074 4074 SRP RNA SRP RNA 261 275 3441.277204 5880.162333 4660.719769 3.668452991 -0.496206 158 46 SH10785 10785 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 811 826 10243.82537 15320.45404 12782.13971 4.10660356 -0.496438 41 61 SH11031 11031 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2041 2054 4292.39196 7148.735573 5720.563767 3.757438831 -0.498702 44 23 SH11389 11389 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3831 3848 27389.48334 36468.59236 31929.03785 4.504185832 -0.499579 93 66 SH5235 5235 snR30 snR30 26 41 5128.407605 8397.964321 6763.185963 3.830151329 -0.506356 153 53 SH11472 11472 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4246 4264 3821.26791 6496.228861 5158.748386 3.712544346 -0.508253 201 44 SH8842 8842 LSR1 / U2 RNA U2 851 866 2885.481943 5079.604133 3982.543038 3.600160478 -0.50854 98 26 SH11879 11879 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6281 6298 417.509923 918.521437 668.01568 2.824786657 -0.509189 145 77 SH11464 11464 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4206 4223 3500.092829 6028.317872 4764.205351 3.677990473 -0.51163 95 45 SH11757 11757 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5671 5684 2477.906063 4458.709381 3468.307722 3.540117623 -0.51332 205 4 SH11145 11145 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2611 2629 297.748576 687.610814 492.679695 2.692564664 -0.515554 113 98 SH18649 18649 YNL112W_14_413636_416278_INTRON_1274_2275 intron 27.172834 164.005372 27.172834 137.832538 82.502686 1.916468088 -0.516489 139 87 SH5416 5416 snR31 snR31 146 160 8737.926009 13519.44467 11128.68534 4.046443863 -0.519008 37 72 SH8843 8843 LSR1 / U2 RNA U2 856 868 7878.843162 12350.9247 10114.88393 4.004960903 -0.519832 195 70 SH12091 12091 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 3'flank to 5S coding 7341 7354 1946.657376 3628.430681 2787.544029 3.445221736 -0.522149 129 64 SH11655 11655 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5161 5177 19415.56843 27370.76766 23393.16804 4.369089041 -0.523835 114 74 SH11367 11367 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3721 3736 10339.74157 15727.70339 13033.72248 4.11506847 -0.524141 157 49 SH1090 1090 Gly4 5' flank 635.745272 1345.206488 990.47588 2.995843904 -0.527815 109 34 SH752 752 Gln4 tRNA 31 47 273.709492 645.052134 459.380813 2.662172852 -0.529281 163 30 SH11451 11451 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4141 4158 4082.311112 6989.907401 5536.109257 3.743204652 -0.531801 12 32 SH10990 10990 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1836 1853 6058.641722 9905.201591 7981.921657 3.902107461 -0.535231 51 72 SH10994 10994 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1856 1875 6044.434333 9897.97403 7971.204182 3.901523934 -0.537276 29 88 SH11773 11773 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5751 5769 1909.318487 3610.826369 2760.072428 3.440920479 -0.540829 141 47 SH11893 11893 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6351 6368 625.117355 1341.245376 983.1813655 2.992633639 -0.546118 9 7 SH15863 15863 YDL079C_4_314747_312950_INTRON_413_704 intron 3282.793361 9111.225833 3282.793361 5829.432472 4556.112917 3.658594479 -0.54642 14 36 SH10756 10756 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 5'ETS 666 683 1057.350304 2146.149398 1601.749851 3.204594692 -0.548166 137 26 SH21 21 Ala1 tRNA 1 13 1245.550702 2489.975523 1867.763113 3.271321794 -0.550876 16 49 SH649 649 Gln2 tRNA 31 47 295.396944 703.706872 499.551908 2.698580622 -0.56195 64 33 SH11772 11772 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5746 5763 2339.673195 4382.960529 3361.316862 3.526509454 -0.56436 45 35 SH1112 1112 Gly4 tRNA 36 48 1800.893852 3485.784377 2643.339115 3.422152882 -0.565695 53 67 SH700 700 Gln3 tRNA 31 47 253.153963 618.36618 435.7600715 2.639247434 -0.567969 197 67 SH11003 11003 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 1901 1919 2075.192642 3966.15926 3020.675951 3.480104138 -0.572565 46 28 SH11849 11849 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6131 6149 7332.151404 12016.71007 9674.430737 3.98562542 -0.574729 194 37 SH11441 11441 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4091 4104 5807.957093 9903.466721 7855.711907 3.895185548 -0.591959 165 87 SH11780 11780 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5786 5803 1535.344844 3085.967961 2310.656403 3.36373537 -0.594684 212 79 SH11735 11735 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5561 5576 14185.57242 21779.85954 17982.71598 4.254855285 -0.596979 120 78 SH950 950 Gly1 tRNA 1 15 1477.573902 2991.797371 2234.685637 3.349216438 -0.599222 63 101 SH11561 11561 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4691 4706 14381.03935 22196.61987 18288.82961 4.262185914 -0.607593 190 29 SH11383 11383 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3801 3819 31061.35977 44222.73225 37642.04601 4.575673221 -0.62559 124 50 SH11753 11753 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5651 5669 1989.388695 3994.625945 2992.00732 3.475962652 -0.640512 109 20 SH11527 11527 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4521 4539 2157.322291 4292.96883 3225.145561 3.50854932 -0.641884 34 96 SH11042 11042 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2096 2109 846.545404 1871.839323 1359.192364 3.133280926 -0.643418 137 53 SH11641 11641 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5091 5104 1682.680764 3457.092132 2569.886448 3.409913934 -0.644762 18 24 SH20392 20392 YFL039C spliced 38.791747 173.252997 106.022372 2.025397516 -0.649191 150 29 SH11744 11744 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5606 5623 16532.99176 25880.56542 21206.77859 4.326474702 -0.654966 151 80 SH20652 20652 YIL004C spliced 3051.59107 5870.87822 4461.234645 3.649455066 -0.655735 11 5 SH11946 11946 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6616 6633 3300.005858 6311.044606 4805.525232 3.681740862 -0.66144 120 19 SH11452 11452 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4146 4164 15307.04456 24861.9426 20084.49358 4.302860886 -0.697383 101 16 SH11751 11751 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5641 5658 13029.61848 21625.96089 17327.78968 4.238743168 -0.700875 138 64 SH11872 11872 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6246 6263 10996.10638 18632.46119 14814.28379 4.17068066 -0.701266 187 76 SH11365 11365 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3711 3728 3917.723168 7527.946106 5722.834637 3.757611197 -0.701283 184 25 SH3342 3342 Thr3 tRNA 56 71 1670.686317 3566.037474 2618.361896 3.418029672 -0.702015 115 54 SH11430 11430 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4036 4051 5980.622507 11003.20039 8491.911449 3.929005457 -0.714242 54 45 SH11390 11390 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3836 3856 4425.051134 8561.187047 6493.119091 3.812453368 -0.734841 118 90 SH11152 11152 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2646 2663 7351.3011 13478.10501 10414.70305 4.017646892 -0.747498 4 9 SH11386 11386 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3816 3834 16979.66608 28143.6807 22561.67339 4.353371308 -0.74763 209 85 SH11429 11429 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4031 4044 9258.076048 16508.43815 12883.2571 4.110025674 -0.747693 183 72 SH11659 11659 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5181 5196 9858.4872 17469.68211 13664.08465 4.135580544 -0.749769 208 16 SH11045 11045 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2111 2129 10956.94897 19230.2493 15093.59913 4.178792812 -0.754565 9 49 SH11967 11967 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6721 6738 27152.87678 42738.33848 34945.60763 4.543392596 -0.754797 39 71 SH9293 9293 RUF1 RUF1 41 59 29.600955 162.432053 96.016504 1.982345889 -0.774713 134 71 SH11765 11765 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5711 5727 8967.095444 16354.6678 12660.88162 4.102463948 -0.776432 147 48 SH11687 11687 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5321 5341 10949.3036 19588.33169 15268.81764 4.183805408 -0.783833 86 54 SH11745 11745 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5611 5628 1920.888645 4279.743042 3100.315844 3.49140594 -0.793708 127 17 SH11603 11603 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4901 4920 13383.90834 23549.76521 18466.83678 4.266392511 -0.795464 128 95 SH11526 11526 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4516 4534 3810.191902 7823.674514 5816.933208 3.764694077 -0.798039 70 28 SH11670 11670 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5236 5253 4239.501625 8602.021176 6420.761401 3.807586532 -0.799907 144 20 SH11688 11688 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5326 5344 11884.73777 21275.79485 16580.26631 4.219591502 -0.800005 124 44 SH13158 13158 MT COX1 intronic 13559.0883 37464.57178 13559.0883 23906.48348 18732.78589 4.272602369 -0.80098 111 5 SH11968 11968 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6726 6743 21451.70308 36282.3806 28867.04184 4.460402282 -0.821739 204 19 SH11894 11894 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6356 6373 949.51012 2346.798115 1648.154118 3.21699782 -0.830893 98 79 SH11387 11387 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3821 3841 17430.73964 30421.80517 23926.2724 4.378875043 -0.831686 114 43 SH11672 11672 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5246 5264 2324.239483 5189.544802 3756.892143 3.574828727 -0.832979 132 58 SH11391 11391 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3841 3859 6217.482636 12312.38891 9264.935773 3.966842413 -0.834561 21 47 SH11637 11637 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5071 5088 701.342966 1805.883885 1253.613426 3.098163635 -0.844833 76 54 SH11144 11144 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 18S 2606 2623 13257.25383 24418.41377 18837.8338 4.275030961 -0.863904 27 67 SH11531 11531 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4541 4558 3632.352335 7842.046609 5737.199472 3.75869995 -0.866074 129 89 SH11838 11838 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6076 6093 1531.773382 3710.798039 2621.285711 3.41851436 -0.880389 24 78 SH11695 11695 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5361 5378 5066.596959 10606.747 7836.67198 3.894131669 -0.881562 157 5 SH11876 11876 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6266 6281 5752.761653 12193.1766 8972.969125 3.952936173 -0.924414 21 83 SH11392 11392 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 3846 3864 7626.715124 15628.21184 11627.46348 4.065484984 -0.925185 172 29 SH11601 11601 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4891 4911 2688.13097 6291.390735 4489.760853 3.652223209 -0.933016 144 19 SH11871 11871 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6241 6258 11154.76452 22011.06961 16582.91706 4.219660929 -0.937751 13 72 SH11910 11910 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6436 6454 1739.891109 4318.15874 3029.024925 3.481302847 -0.94097 77 22 SH11544 11544 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4606 4621 4689.518078 10315.12038 7502.319227 3.87519554 -0.94302 167 31 SH11766 11766 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5716 5731 442.174958 1282.286866 862.230912 2.935623589 -0.945079 206 41 SH3800 3800 RNaseP 5' flank 672.055962 1880.328237 1276.1921 3.105916052 -0.964463 158 69 SH11563 11563 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4701 4718 13057.36814 26611.39875 19834.38344 4.297418705 -1.01643 147 35 SH3288 3288 Thr2 tRNA 41 53 4177.018438 9867.028602 7022.02352 3.84646228 -1.030821 103 27 SH11973 11973 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6751 6768 8455.754228 18417.4395 13436.59686 4.128289287 -1.038084 78 89 SH11571 11571 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4741 4756 675.867778 2023.060918 1349.464348 3.130161415 -1.068383 108 12 SH11869 11869 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6231 6247 7965.508131 17874.8129 12920.16051 4.111267909 -1.072785 179 81 SH11857 11857 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6171 6189 12611.47663 27166.42162 19888.94912 4.298611837 -1.095036 205 27 SH11529 11529 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4531 4549 4403.282247 10788.90508 7596.093663 3.880590311 -1.096967 125 36 SH11897 11897 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6371 6388 4923.799423 12125.56693 8524.683175 3.930678247 -1.125764 27 80 SH11839 11839 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6081 6098 3594.783152 9214.856428 6404.81979 3.806506915 -1.128095 158 61 SH11675 11675 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5261 5276 3191.628293 8362.572875 5777.100584 3.761709929 -1.139234 70 59 SH11562 11562 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4696 4711 2709.344735 7250.078937 4979.711836 3.697204212 -1.140523 211 2 SH11873 11873 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6251 6266 5072.828689 12746.61571 8909.722199 3.949864163 -1.162292 136 15 SH11877 11877 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6271 6284 9388.001493 22135.61592 15761.80871 4.197606052 -1.179232 194 83 SH11858 11858 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6176 6194 11170.17471 25936.64933 18553.41202 4.268423789 -1.187813 136 42 SH11944 11944 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6606 6624 3059.874976 8440.824671 5750.349824 3.759694266 -1.210376 189 12 SH11975 11975 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6761 6778 2691.43646 7572.625476 5132.030968 3.710289268 -1.216394 194 48 SH11848 11848 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6126 6143 1591.693355 4837.509912 3214.601634 3.507127161 -1.235539 44 52 SH11969 11969 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6731 6751 10301.08124 25032.55948 17666.82036 4.247158393 -1.242722 82 69 SH11608 11608 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4926 4939 6593.04366 17163.83168 11878.43767 4.074759323 -1.26569 183 18 SH11909 11909 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6431 6448 3351.823106 9710.248955 6531.036031 3.81498208 -1.302933 194 31 SH11639 11639 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5081 5098 5633.735178 15854.88649 10744.31083 4.031178564 -1.356037 56 70 SH11754 11754 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5656 5674 4410.860548 13314.98358 8862.922066 3.94757693 -1.417932 83 63 SH11945 11945 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6611 6630 4780.873323 14612.3982 9696.635762 3.986621082 -1.452133 179 4 SH11855 11855 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6161 6179 6331.991484 18783.34589 12557.66869 4.098909021 -1.458689 105 67 SH11605 11605 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 4911 4928 6262.239287 18748.97602 12505.60765 4.097104799 -1.470826 19 103 SH11752 11752 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 5646 5664 1053.838667 4113.987083 2583.912875 3.412277866 -1.54463 80 59 SH11966 11966 "rDNA (5’ETS to 5S coding seq; incl 18S, 5.8S and 25S)" 25S 6716 6732 3190.150747 15163.07319 9176.61197 3.962682368 -2.054636 162 69 SH14743 14743 MT ORF11; tRNA Leu; tRNA Gln 5' 50.888647 502.095177 50.888647 452.20653 251.5475885 2.400620158 -2.084075