"Homeodomain"	"Nearest-neighbours"	"Distance to Nearest-neighbours"
1700123J19Rik	Gsc_2327.3	3
Adnp	Obox1_3970.2,Obox2_3438.2,Obox3_3439.1,Obox5_2284.1,Obox5_3963.2,Pax4_3989.2,Pax6_3838.3	9
Alx3_3418.2	Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	0
Alx4_1744.1	Alx3_3418.2,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	0
Arx_1738.2	Alx3_3418.2,Alx4_1744.1,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	0
Atbf1	Lhx2_0953.2,Lhx6_2272.1,Lhx6_3432.1,Lhx8_2247.2,Lhx9_3492.1	1
Bapx1_2343.1	Nkx3-1_2923.2	0
Barhl1_2590.2	Barhl2_3868.1	0
Barhl2_3868.1	Barhl1_2590.2	0
Barx1_2877.1	Barx2_3447.2	0
Barx2_3447.2	Barx1_2877.1	0
Bsx_3483.2	Barhl1_2590.2,Barhl2_3868.1,Barx1_2877.1,Barx2_3447.2,Hmx2_3424.3,Meox1_2310.2	1
Cart1_0997.1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	0
Cdx1_2245.1	Cdx2_4272.1	0
Cdx2_4272.1	Cdx1_2245.1	0
Cdx4	Cdx1_2245.1,Cdx2_4272.1	0
chr7:13,924,529-13,925,253-Sim-To-Obox4	Obox6_3440.2	6
chr7:13956871-13957624-Sim-To-Obox3	Obox1_3970.2,Obox2_3438.2,Obox3_3439.1,Obox5_2284.1,Obox5_3963.2	1
chr7:14,062,784-14,074,594-Sim-To-Obox4	Obox6_3440.2	4
chr7:14,537,808-14,538,53-Sim-To-Obox4	Obox6_3440.2	5
chrX:49124240-49124657	Pou1f1_3818.1,Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1,Pou4f3_2791.1	6
Chx10	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Cart1_1275.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	0
Cphx_3484.1	Cdx1_2245.1,Cdx2_4272.1,Meis1_2335.1,Mrg1_2246.2,Mrg2_2302.1,Tgif2_3451.1	6
Crx_3485.1	Dmbx1_2277.1,Otx1_2325.1,Otx2_3441.1	0
Crxos1	Cutl1_3494.1,Cutl1_3494.2,Hoxa6_1040.1,Hoxa7_2668.2,Hoxa7_3750.1,Hoxb6_3428.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxc6_3954.2,Hoxc8_3429.2,Hoxd8_2644.1,Meis1_2335.1,Mrg1_2246.2,Mrg2_2302.1,Pou1f1_3818.1,Rhox11_1765.2,Rhox11_2205.1,Six1_0935.2,Six2_2307.2,Tgif2_3451.1	10
Cutl1_3494.1	Cdx1_2245.1,Cdx2_4272.1,Cphx_3484.1,Meis1_2335.1,Mrg1_2246.2,Mrg2_2302.1,Obox1_3970.2,Obox2_3438.2,Obox3_3439.1,Obox5_2284.1,Tgif2_3451.1	7
Cutl2	Cutl1_3494.1,Cutl1_3494.2	0
Dbx1_3486.1	Dbx2_3487.1	0
Dbx2_3487.1	Dbx1_3486.1	0
Dlx1_1741.2	Dlx2_2273.2,Dlx3_1030.1,Dlx4_3488.2,Dlx5_3419.2	0
Dlx2_2273.2	Dlx1_1741.2,Dlx3_1030.1,Dlx4_3488.2,Dlx5_3419.2	0
Dlx3_1030.1	Dlx1_1741.2,Dlx2_2273.2,Dlx4_3488.2,Dlx5_3419.2	0
Dlx4_3488.2	Dlx1_1741.2,Dlx2_2273.2,Dlx3_1030.1,Dlx5_3419.2	0
Dlx5_3419.2	Dlx1_1741.2,Dlx2_2273.2,Dlx3_1030.1,Dlx4_3488.2	0
Dlx6	Dlx1_1741.2,Dlx2_2273.2,Dlx3_1030.1,Dlx4_3488.2,Dlx5_3419.2	0
Dmbx1_2277.1	Crx_3485.1,Otx1_2325.1,Otx2_3441.1	0
Dobox4_3956.2	Cdx1_2245.1,Cdx2_4272.1,Obox1_3970.2,Obox2_3438.2,Obox3_3439.1,Obox5_2284.1,Tlx2_3498.2	6
Dobox5_3493.1	Obox1_3970.2,Obox2_3438.2,Obox3_3439.1,Obox5_2284.1	6
Duxl_1286.2	Isx_3445.1	4
EG194588	Obox1_3970.2,Obox2_3438.2,Obox3_3439.1,Obox5_2284.1,Obox5_3963.2	2
EG245263	Duxl_1286.2	6
Emx1	Emx2_3420.1,Vax1_3499.1,Vax2_3500.1	0
Emx2_3420.1	Vax1_3499.1,Vax2_3500.1	0
En1_3123.2	En2_0952.1,Gbx1_2883.2,Gbx2_3110.1	0
En2_0952.1	En1_3123.2,Gbx1_2883.2,Gbx2_3110.1	0
ENSMUSG00000071772	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Bapx1_2343.1,Barx1_2877.1,Barx2_3447.2,Cart1_0997.1,Cart1_1275.1,Dbx1_3486.1,Dbx2_3487.1,Duxl_1286.2,Emx2_3420.1,En1_3123.2,En2_0952.1,Esx1_3124.2,Evx1_3952.2,Evx2_2645.3,Gbx1_2883.2,Gbx2_3110.1,Gsh2_3990.2,Hlx1_2350.1,Hlxb9_3422.1,Hoxa2_3079.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxa6_1040.1,Hoxa7_2668.2,Hoxa7_3750.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxb6_3428.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxc6_3954.2,Hoxd12_3481.1,Hoxd3_1742.2,Hoxd8_2644.1,Ipf1_3815.1,Isx_3445.1,Nkx1-1_3856.3,Nkx1-2_3214.1,Nkx3-1_2923.2,Nkx6-1_2825.1,Nkx6-1_2825.2,Nkx6-3_3446.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Tlx2_3498.2,Uncx4.1_2281.2,Vax1_3499.1,Vax2_3500.1,Vsx1_1728.1	9
Esx1_3124.2	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	1
Evx1_3952.2	Evx2_2645.3	0
Evx2_2645.3	Evx1_3952.2	0
Gbx1_2883.2	En1_3123.2,En2_0952.1,Gbx2_3110.1	0
Gbx2_3110.1	En1_3123.2,En2_0952.1,Gbx1_2883.2	0
Gsc_2327.3	Crx_3485.1,Dmbx1_2277.1,Otx1_2325.1,Otx2_3441.1,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2	2
Gscl	Crx_3485.1,Dmbx1_2277.1,Gsc_2327.3,Otx1_2325.1,Otx2_3441.1,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2	1
Gsh1	Gsh2_3990.2	0
Gsh2_3990.2	En1_3123.2,En2_0952.1,Gbx1_2883.2,Gbx2_3110.1,Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2,Nkx1-1_3856.3,Nkx1-2_3214.1	1
Hdx_3845.3	Pax4_3989.2,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2,Pou4f3_2791.1	6
Hesx1	Isx_3445.1,Otp_3496.1	1
Hhex	Cdx1_2245.1,Cdx2_4272.1,Tlx2_3498.2	4
Hlx1_2350.1	Dbx1_3486.1,Dbx2_3487.1	2
Hlxb9_3422.1	Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2	0
Hmbox1_2674.1	Tcf1_2666.2,Tcf2_0913.2	5
Hmx1_3423.1	Hmx3_3490.2	0
Hmx2_3424.3	Barhl1_2590.2,Barhl2_3868.1,Bsx_3483.2,Hmx1_3423.1,Hmx3_3490.2	1
Hmx3_3490.2	Hmx1_3423.1	0
Hod	Crx_3485.1,Dmbx1_2277.1,Lhx2_0953.2,Lhx9_3492.1,Otx1_2325.1,Otx2_3441.1,Six1_0935.2,Six2_2307.2	10
Homez_1063.2	Bapx1_2343.1,Nkx2-2_2823.1,Nkx2-3_3435.1,Nkx2-4_3074.1,Nkx2-5_3436.1,Nkx2-6_3437.1,Nkx2-9_3082.1,Nkx3-1_2923.2,Obox6_3440.2,Pbx1_3203.1,Titf1_1722.2	10
Hoxa10_2318.1	Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1	0
Hoxa11_2218.1	Hoxa10_2318.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1	0
Hoxa13_3126.1	Hoxc13_3127.1,Hoxd13_2356.1	0
Hoxa1_3425.1	Hoxd1_3448.1	0
Hoxa2_3079.1	Barx1_2877.1,Barx2_3447.2,Emx2_3420.1,Evx1_3952.2,Evx2_2645.3,Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2,Meox1_2310.2,Vax1_3499.1,Vax2_3500.1	1
Hoxa3_2783.2	Hlxb9_3422.1,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2	0
Hoxa4_3426.1	Hlxb9_3422.1,Hoxa3_2783.2,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2	0
Hoxa5_3415.1	Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2	0
Hoxa6_1040.1	Hoxa7_2668.2,Hoxb6_3428.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxc6_3954.2,Hoxd8_2644.1	0
Hoxa7_2668.2	Hoxa6_1040.1,Hoxb6_3428.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxc6_3954.2,Hoxd8_2644.1	0
Hoxa9_2622.2	Hoxa10_2318.1,Hoxa11_2218.1,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1	0
Hoxb13_3479.1	Hoxa13_3126.1,Hoxc13_3127.1,Hoxd13_2356.1	1
Hoxb1	Hlxb9_3422.1,Hoxa1_3425.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd1_3448.1,Hoxd3_1742.2	1
Hoxb2	Hoxa2_3079.1	0
Hoxb3_1720.2	Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2	0
Hoxb4_2627.1	Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2	0
Hoxb5_3122.2	Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2	0
Hoxb6_3428.2	Hoxa6_1040.1,Hoxa7_2668.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxc6_3954.2,Hoxd8_2644.1	0
Hoxb7_3953.1	Hoxa6_1040.1,Hoxa7_2668.2,Hoxb6_3428.2,Hoxb8_3780.2,Hoxc6_3954.2,Hoxd8_2644.1	0
Hoxb8_3780.2	Hoxa6_1040.1,Hoxa7_2668.2,Hoxb6_3428.2,Hoxb7_3953.1,Hoxc6_3954.2,Hoxd8_2644.1	0
Hoxb9_3413.1	Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1	0
Hoxc10_2779.2	Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1	0
Hoxc11_3718.2	Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1	0
Hoxc12_3480.1	Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1	0
Hoxc13_3127.1	Hoxa13_3126.1,Hoxd13_2356.1	0
Hoxc4_3491.1	Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc5_2630.2,Hoxd3_1742.2	0
Hoxc5_2630.2	Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxd3_1742.2	0
Hoxc6_3954.2	Hoxa6_1040.1,Hoxa7_2668.2,Hoxb6_3428.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxd8_2644.1	0
Hoxc8_3429.2	Hoxa6_1040.1,Hoxa7_2668.2,Hoxb6_3428.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxc6_3954.2,Hoxd8_2644.1	1
Hoxc9_2367.2	Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxd10_2368.2,Hoxd11_3873.1	0
Hoxd10_2368.2	Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd11_3873.1	0
Hoxd11_3873.1	Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2	0
Hoxd12_3481.1	Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1	2
Hoxd13_2356.1	Hoxa13_3126.1,Hoxc13_3127.1	0
Hoxd1_3448.1	Hoxa1_3425.1	0
Hoxd3_1742.2	Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2	0
Hoxd4	Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2	0
Hoxd8_2644.1	Hoxa6_1040.1,Hoxa7_2668.2,Hoxb6_3428.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxc6_3954.2	0
Hoxd9	Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1	0
Ipf1_3815.1	Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2	1
Irx1	Irx3_0920.1,Irx3_2226.1,Irx4_2242.3,Irx6_2623.2	0
Irx2_0900.3	Irx5_2385.1	0
Irx3_0920.1	Irx4_2242.3,Irx6_2623.2	0
Irx4_2242.3	Irx3_0920.1,Irx6_2623.2	0
Irx5_2385.1	Irx2_0900.3	0
Irx6_2623.2	Irx3_0920.1,Irx4_2242.3	0
Irxl1	Irx2_0900.3,Irx5_2385.1	3
Isl1	Isl2_3430.1	0
Isl2_3430.1	Pou4f3_2791.1	3
Isx_3445.1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	1
Lass4	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Cart1_1275.1,Cdx1_2245.1,Cdx2_4272.1,Crx_3485.1,Dbx1_3486.1,Dbx2_3487.1,Dmbx1_2277.1,Esx1_3124.2,Hlx1_2350.1,Hmx1_3423.1,Hmx2_3424.3,Hmx3_3490.2,Isx_3445.1,Lhx1_2240.2,Lhx2_0953.2,Lhx5_2279.1,Lhx9_3492.1,Nkx6-1_2825.1,Nkx6-1_2825.2,Nkx6-3_3446.1,Otx1_2325.1,Otx2_3441.1,Pax6_3838.3,Pax7_3783.1,Pbx1_3203.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Rhox6_4251.1,Shox2_2641.2,Tlx2_3498.2,Uncx4.1_2281.2,Vsx1_1728.1	10
Lass6	Lhx6_2272.1,Lhx6_3432.1,Lhx8_2247.2	10
Lbx1	Lbx2_3869.2	1
Lbx2_3869.2	Barhl1_2590.2,Barhl2_3868.1,Bsx_3483.2,Hmx2_3424.3,Msx1_3031.2,Msx2_3449.1,Msx3_3206.1	2
Lhx1_2240.2	Lhx5_2279.1	0
Lhx2_0953.2	Lhx9_3492.1	0
Lhx3_3431.1	Lhx4_1719.2,Lmx1a_2238.2,Lmx1b_3433.2	0
Lhx4_1719.2	Lhx3_3431.1,Lmx1a_2238.2,Lmx1b_3433.2	0
Lhx5_2279.1	Lhx1_2240.2	0
Lhx6_2272.1	Lhx8_2247.2	0
Lhx8_2247.2	Lhx6_2272.1	0
Lhx9_3492.1	Lhx2_0953.2	0
Lmx1a_2238.2	Lhx3_3431.1,Lhx4_1719.2,Lmx1b_3433.2	0
Lmx1b_3433.2	Lhx3_3431.1,Lhx4_1719.2,Lmx1a_2238.2	0
LOC621852-Sim-To-Rhox2	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Cart1_1275.1,Crx_3485.1,Dmbx1_2277.1,Esx1_3124.2,Isx_3445.1,Lhx1_2240.2,Lhx5_2279.1,Otx1_2325.1,Otx2_3441.1,Pax4_3989.2,Pax6_3838.3,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	9
Meis1_2335.1	Mrg1_2246.2,Mrg2_2302.1	0
Meox1_2310.2	Bsx_3483.2,Hoxa2_3079.1	1
Meox2	Meox1_2310.2	0
Mixl1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Cart1_1275.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	0
Mkx	Irx2_0900.3,Irx5_2385.1	3
Mrg1_2246.2	Meis1_2335.1,Mrg2_2302.1	0
Mrg2_2302.1	Meis1_2335.1,Mrg1_2246.2	0
Msx1_3031.2	Msx2_3449.1,Msx3_3206.1	0
Msx2_3449.1	Msx1_3031.2,Msx3_3206.1	0
Msx3_3206.1	Msx1_3031.2,Msx2_3449.1	0
Nanog	Bsx_3483.2	1
Nkx1-1_3856.3	Nkx1-2_3214.1	0
Nkx1-2_3214.1	Nkx1-1_3856.3	0
Nkx2-2_2823.1	Nkx2-3_3435.1,Nkx2-4_3074.1,Nkx2-5_3436.1,Nkx2-6_3437.1,Nkx2-9_3082.1,Titf1_1722.2	0
Nkx2-3_3435.1	Nkx2-2_2823.1,Nkx2-4_3074.1,Nkx2-5_3436.1,Nkx2-6_3437.1,Nkx2-9_3082.1,Titf1_1722.2	0
Nkx2-4_3074.1	Nkx2-2_2823.1,Nkx2-3_3435.1,Nkx2-5_3436.1,Nkx2-6_3437.1,Nkx2-9_3082.1,Titf1_1722.2	0
Nkx2-5_3436.1	Nkx2-2_2823.1,Nkx2-3_3435.1,Nkx2-4_3074.1,Nkx2-6_3437.1,Nkx2-9_3082.1,Titf1_1722.2	0
Nkx2-6_3437.1	Nkx2-2_2823.1,Nkx2-3_3435.1,Nkx2-4_3074.1,Nkx2-5_3436.1,Nkx2-9_3082.1,Titf1_1722.2	0
Nkx2-9_3082.1	Nkx2-2_2823.1,Nkx2-3_3435.1,Nkx2-4_3074.1,Nkx2-5_3436.1,Nkx2-6_3437.1,Titf1_1722.2	0
Nkx3-1_2923.2	Bapx1_2343.1	0
Nkx6-1_2825.1	Nkx6-3_3446.1	0
Nkx6.2	Nkx6-1_2825.1,Nkx6-1_2825.2,Nkx6-3_3446.1	0
Nkx6-3_3446.1	Nkx6-1_2825.1	0
Noto	Gsh2_3990.2	3
Obox1_3970.2	Obox2_3438.2,Obox3_3439.1,Obox5_2284.1	0
Obox2_3438.2	Obox1_3970.2,Obox3_3439.1,Obox5_2284.1	0
Obox3_3439.1	Obox1_3970.2,Obox2_3438.2,Obox5_2284.1	0
Obox4	Obox6_3440.2	4
Obox5_2284.1	Obox1_3970.2,Obox2_3438.2,Obox3_3439.1	0
Obox6_3440.2	Msx1_3031.2,Msx2_3449.1,Msx3_3206.1,Obox1_3970.2,Obox2_3438.2,Obox3_3439.1,Obox5_2284.1	3
Og2x_3719.1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	2
Og2x	Og2x_3719.1	0
Og9x	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Cart1_1275.1,Otp_3496.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	2
Onecut1	Tgif2_3451.1	7
Onecut2	Pknox1_2364.2,Pknox2_3077.2,Tgif1_2342.2,Tgif2_3451.1	8
Onecut3	Cutl1_3494.1,Cutl1_3494.2,Meis1_2335.1,Mrg1_2246.2,Mrg2_2302.1,Tgif2_3451.1	8
Otp_3496.1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	1
Otx1_2325.1	Crx_3485.1,Dmbx1_2277.1,Otx2_3441.1	0
Otx2_3441.1	Crx_3485.1,Dmbx1_2277.1,Otx1_2325.1	0
Pax3	Pax7_3783.1	0
Pax4_3989.2	Pax6_3838.3,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2	2
Pax6_3838.3	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Crx_3485.1,Dmbx1_2277.1,Otx1_2325.1,Otx2_3441.1,Pax7_3783.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	1
Pax7_3783.1	Pax6_3838.3	1
Pbx1_3203.1	Irx2_0900.3,Irx5_2385.1,Tgif1_2342.2	5
Pbx2	Pbx1_3203.1	0
Pbx3	Pbx1_3203.1	0
Pbx4	Pbx1_3203.1	0
Pdx1	Ipf1_3815.1	0
Phox2a_3947.1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	0
Phox2b_3948.1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	0
Pitx1_2312.1	Pitx2_2274.3,Pitx3_3497.2	0
Pitx2_2274.3	Pitx1_2312.1,Pitx3_3497.2	0
Pitx3_3497.2	Pitx1_2312.1,Pitx2_2274.3	0
Pknox1_2364.2	Pknox2_3077.2	0
Pknox2_3077.2	Pknox1_2364.2	0
Pou1f1_3818.1	Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1	1
Pou2f1_3081.2	Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1	0
Pou2f2_3748.1	Pou2f1_3081.2,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1	0
Pou2f3_3986.2	Pou2f1_3081.2,Pou2f2_3748.1,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1	0
Pou3f1_3819.1	Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1	0
Pou3f2_2824.1	Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f3_3235.2,Pou3f4_3773.1	0
Pou3f3_3235.2	Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f4_3773.1	0
Pou3f4_3773.1	Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2	0
Pou4f1	Pou4f3_2791.1	0
Pou4f2	Pou4f3_2791.1	0
Pou4f3_2791.1	Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1	2
Pou5f1	Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1,Pou4f3_2791.1	1
Pou5f2	Pax6_3838.3,Pax7_3783.1	8
Pou6f1_1731.2	Pou1f1_3818.1,Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1	2
Pou6f2	Pou1f1_3818.1,Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1,Pou6f1_1731.2,Pou6f1_3733.1	3
Prop1_3949.1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	0
Prrx1_3442.1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	0
Prrx2_3072.1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	0
Prrxl1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Cart1_1275.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	0
Rax_3443.1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	0
Rhox10	Gsc_2327.3,Rhox11_1765.2,Rhox11_2205.1	6
Rhox11_1765.2	Cdx1_2245.1,Cdx2_4272.1,Gsc_2327.3,Msx1_3031.2,Msx2_3449.1,Msx3_3206.1,Obox1_3970.2,Obox2_3438.2,Obox3_3439.1,Obox5_2284.1,Og2x_3719.1,Tlx2_3498.2	6
Rhox12	Crx_3485.1,Dmbx1_2277.1,Gsc_2327.3,Otx1_2325.1,Otx2_3441.1	5
Rhox1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Cart1_1275.1,Esx1_3124.2,Isx_3445.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	6
Rhox2	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Cart1_1275.1,Crx_3485.1,Dmbx1_2277.1,Esx1_3124.2,Isx_3445.1,Lhx1_2240.2,Lhx5_2279.1,Otx1_2325.1,Otx2_3441.1,Pax4_3989.2,Pax6_3838.3,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	9
Rhox3	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Bapx1_2343.1,Barx1_2877.1,Barx2_3447.2,Cart1_0997.1,Cart1_1275.1,Dbx1_3486.1,Dbx2_3487.1,Duxl_1286.2,Emx2_3420.1,En1_3123.2,En2_0952.1,Esx1_3124.2,Evx1_3952.2,Evx2_2645.3,Gbx1_2883.2,Gbx2_3110.1,Gsh2_3990.2,Hlx1_2350.1,Hlxb9_3422.1,Hoxa2_3079.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxa6_1040.1,Hoxa7_2668.2,Hoxa7_3750.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxb6_3428.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxc6_3954.2,Hoxd12_3481.1,Hoxd3_1742.2,Hoxd8_2644.1,Ipf1_3815.1,Isx_3445.1,Nkx1-1_3856.3,Nkx1-2_3214.1,Nkx3-1_2923.2,Nkx6-1_2825.1,Nkx6-1_2825.2,Nkx6-3_3446.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Tlx2_3498.2,Uncx4.1_2281.2,Vax1_3499.1,Vax2_3500.1,Vsx1_1728.1	9
Rhox4a	Crx_3485.1,Dmbx1_2277.1,Otx1_2325.1,Otx2_3441.1,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2	9
Rhox4b	Crx_3485.1,Dmbx1_2277.1,Duxl_1286.2,Og2x_3719.1,Otx1_2325.1,Otx2_3441.1,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2	9
Rhox4c	Crx_3485.1,Dmbx1_2277.1,Otx1_2325.1,Otx2_3441.1,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2	9
Rhox4	Crx_3485.1,Dmbx1_2277.1,Duxl_1286.2,Og2x_3719.1,Otx1_2325.1,Otx2_3441.1,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2	9
Rhox4d	Crx_3485.1,Dmbx1_2277.1,Og2x_3719.1,Otx1_2325.1,Otx2_3441.1,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2	9
Rhox4e	Crx_3485.1,Dmbx1_2277.1,Otx1_2325.1,Otx2_3441.1,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2	9
Rhox4g	Crx_3485.1,Dmbx1_2277.1,Duxl_1286.2,Og2x_3719.1,Otx1_2325.1,Otx2_3441.1,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2	9
Rhox4h	Crx_3485.1,Dmbx1_2277.1,Duxl_1286.2,Og2x_3719.1,Otx1_2325.1,Otx2_3441.1,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2	9
Rhox5	Crx_3485.1,Dmbx1_2277.1,Otx1_2325.1,Otx2_3441.1	7
Rhox6_4251.1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Crx_3485.1,Dmbx1_2277.1,Isx_3445.1,Obox6_3440.2,Otp_3496.1,Otx1_2325.1,Otx2_3441.1,Pax6_3838.3,Pax7_3783.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1	7
Rhox7	Crx_3485.1,Dmbx1_2277.1,Gsc_2327.3,Otx1_2325.1,Otx2_3441.1	8
Rhox8	Crx_3485.1,Dmbx1_2277.1,Gsc_2327.3,Otx1_2325.1,Otx2_3441.1,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2	4
Rhox9	Rhox6_4251.1	5
Satb1	Evx1_3952.2,Evx2_2645.3	6
Satb2	Evx1_3952.2,Evx2_2645.3	7
Shox2_2641.2	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Uncx4.1_2281.2,Vsx1_1728.1	0
Sim-To-Rhox5	Crx_3485.1,Dmbx1_2277.1,Otx1_2325.1,Otx2_3441.1	7
Six1_0935.2	Six2_2307.2	0
Six2_2307.2	Six1_0935.2	0
Six3_1732.2	Six6_2267.5	0
Six4_2860.1	Six1_0935.2,Six2_2307.2	3
Six5	Six4_2860.1	0
Six6_2267.5	Six3_1732.2	0
Tcf1_2666.2	Tcf2_0913.2	1
Tcf2_0913.2	Tcf1_2666.2	1
Tgif1_2342.2	Tgif2_3451.1	1
Tgif2_3451.1	Tgif1_2342.2	1
Tgifx1	Meis1_2335.1,Mrg1_2246.2,Mrg2_2302.1,Pbx1_3203.1,Pknox1_2364.2,Pknox2_3077.2,Six1_0935.2,Six2_2307.2,Six4_2860.1,Tgif1_2342.2,Tgif2_3451.1	6
Titf1_1722.2	Nkx2-2_2823.1,Nkx2-3_3435.1,Nkx2-4_3074.1,Nkx2-5_3436.1,Nkx2-6_3437.1,Nkx2-9_3082.1	0
Tlx1	Tlx2_3498.2	0
Tlx2_3498.2	Barhl1_2590.2,Barhl2_3868.1	1
Tlx3	Tlx2_3498.2	0
Tshz1	Hmbox1_2674.1,Lhx1_2240.2,Lhx5_2279.1,Pax4_3989.2	10
Tshz2	Hmbox1_2674.1,Lhx1_2240.2,Lhx5_2279.1,Pax4_3989.2	10
Tshz3	Hmbox1_2674.1,Lhx1_2240.2,Lhx5_2279.1,Pax4_3989.2	10
Uncx4.1_2281.2	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Vsx1_1728.1	0
Vax1_3499.1	Emx2_3420.1,Vax2_3500.1	0
Vax2_3500.1	Emx2_3420.1,Vax1_3499.1	0
Vsx1_1728.1	Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2	0
XP_895249.1	Tgif2_3451.1	1
Zeb2	Bapx1_2343.1,Nkx2-2_2823.1,Nkx2-3_3435.1,Nkx2-4_3074.1,Nkx2-5_3436.1,Nkx2-6_3437.1,Nkx2-9_3082.1,Nkx3-1_2923.2,Titf1_1722.2	11
Zfhx2	Lhx2_0953.2,Lhx6_2272.1,Lhx6_3432.1,Lhx8_2247.2,Lhx9_3492.1	1
Zfhx4	Lhx2_0953.2,Lhx6_2272.1,Lhx6_3432.1,Lhx8_2247.2,Lhx9_3492.1	1
Zhx1	Homez_1063.2	5
Zhx2	Homez_1063.2	9
Zhx3	Homez_1063.2,Obox1_3970.2,Obox2_3438.2,Obox3_3439.1,Obox5_2284.1,Obox5_3963.2,Obox6_3440.2	9