"Homeodomain"	"Nearest neighbours"	"AA Differences among 15 selected residues"	"Top 100 overlap between predicted and real version"
"Alx3_3418.2"	"Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	0	86
"Alx4_1744.1"	"Alx3_3418.2,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	0	93
"Arx_1738.2"	"Alx3_3418.2,Alx4_1744.1,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	0	93
"Bapx1_2343.1"	"Nkx3-1_2923.2"	0	80
"Barhl1_2590.2"	"Barhl2_3868.1"	0	78
"Barhl2_3868.1"	"Barhl1_2590.2"	0	78
"Barx1_2877.1"	"Barx2_3447.2"	0	80
"Barx2_3447.2"	"Barx1_2877.1"	0	80
"Bsx_3483.2"	"Barhl1_2590.2,Barhl2_3868.1,Barx1_2877.1,Barx2_3447.2,Hmx2_3424.3,Meox1_2310.2"	1	72
"Cart1_0997.1"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	0	95
"Cdx1_2245.1"	"Cdx2_4272.1"	0	80
"Cdx2_4272.1"	"Cdx1_2245.1"	0	80
"Cphx_3484.1"	"Cdx1_2245.1,Cdx2_4272.1,Meis1_2335.1,Mrg1_2246.2,Mrg2_2302.1,Tgif2_3451.1"	6	0
"Crx_3485.1"	"Dmbx1_2277.1,Otx1_2325.1,Otx2_3441.1"	0	90
"Cutl1_3494.1"	"Cdx1_2245.1,Cdx2_4272.1,Cphx_3484.1,Meis1_2335.1,Mrg1_2246.2,Mrg2_2302.1,Obox1_3970.2,Obox2_3438.2,Obox3_3439.1,Obox5_2284.1,Tgif2_3451.1"	7	0
"Dbx1_3486.1"	"Dbx2_3487.1"	0	56
"Dbx2_3487.1"	"Dbx1_3486.1"	0	56
"Dlx1_1741.2"	"Dlx2_2273.2,Dlx3_1030.1,Dlx4_3488.2,Dlx5_3419.2"	0	93
"Dlx2_2273.2"	"Dlx1_1741.2,Dlx3_1030.1,Dlx4_3488.2,Dlx5_3419.2"	0	88
"Dlx3_1030.1"	"Dlx1_1741.2,Dlx2_2273.2,Dlx4_3488.2,Dlx5_3419.2"	0	88
"Dlx4_3488.2"	"Dlx1_1741.2,Dlx2_2273.2,Dlx3_1030.1,Dlx5_3419.2"	0	90
"Dlx5_3419.2"	"Dlx1_1741.2,Dlx2_2273.2,Dlx3_1030.1,Dlx4_3488.2"	0	88
"Dmbx1_2277.1"	"Crx_3485.1,Otx1_2325.1,Otx2_3441.1"	0	89
"Dobox4_3956.2"	"Cdx1_2245.1,Cdx2_4272.1,Obox1_3970.2,Obox2_3438.2,Obox3_3439.1,Obox5_2284.1,Tlx2_3498.2"	6	0
"Dobox5_3493.1"	"Obox1_3970.2,Obox2_3438.2,Obox3_3439.1,Obox5_2284.1"	6	75
"Duxl_1286.2"	"Isx_3445.1"	4	0
"Emx2_3420.1"	"Vax1_3499.1,Vax2_3500.1"	0	87
"En1_3123.2"	"En2_0952.1,Gbx1_2883.2,Gbx2_3110.1"	0	81
"En2_0952.1"	"En1_3123.2,Gbx1_2883.2,Gbx2_3110.1"	0	86
"Esx1_3124.2"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	1	90
"Evx1_3952.2"	"Evx2_2645.3"	0	82
"Evx2_2645.3"	"Evx1_3952.2"	0	82
"Gbx1_2883.2"	"En1_3123.2,En2_0952.1,Gbx2_3110.1"	0	87
"Gbx2_3110.1"	"En1_3123.2,En2_0952.1,Gbx1_2883.2"	0	87
"Gsc_2327.3"	"Crx_3485.1,Dmbx1_2277.1,Otx1_2325.1,Otx2_3441.1,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2"	2	80
"Gsh2_3990.2"	"En1_3123.2,En2_0952.1,Gbx1_2883.2,Gbx2_3110.1,Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2,Nkx1-1_3856.3,Nkx1-2_3214.1"	1	74
"Hdx_3845.3"	"Pax4_3989.2,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2,Pou4f3_2791.1"	6	0
"Hlx1_2350.1"	"Dbx1_3486.1,Dbx2_3487.1"	2	69
"Hlxb9_3422.1"	"Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2"	0	72
"Hmbox1_2674.1"	"Tcf1_2666.2,Tcf2_0913.2"	5	47
"Hmx1_3423.1"	"Hmx3_3490.2"	0	85
"Hmx2_3424.3"	"Barhl1_2590.2,Barhl2_3868.1,Bsx_3483.2,Hmx1_3423.1,Hmx3_3490.2"	1	55
"Hmx3_3490.2"	"Hmx1_3423.1"	0	85
"Homez_1063.2"	"Bapx1_2343.1,Nkx2-2_2823.1,Nkx2-3_3435.1,Nkx2-4_3074.1,Nkx2-5_3436.1,Nkx2-6_3437.1,Nkx2-9_3082.1,Nkx3-1_2923.2,Obox6_3440.2,Pbx1_3203.1,Titf1_1722.2"	10	0
"Hoxa10_2318.1"	"Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1"	0	77
"Hoxa11_2218.1"	"Hoxa10_2318.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1"	0	84
"Hoxa13_3126.1"	"Hoxc13_3127.1,Hoxd13_2356.1"	0	82
"Hoxa1_3425.1"	"Hoxd1_3448.1"	0	83
"Hoxa2_3079.1"	"Barx1_2877.1,Barx2_3447.2,Emx2_3420.1,Evx1_3952.2,Evx2_2645.3,Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2,Meox1_2310.2,Vax1_3499.1,Vax2_3500.1"	1	89
"Hoxa3_2783.2"	"Hlxb9_3422.1,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2"	0	91
"Hoxa4_3426.1"	"Hlxb9_3422.1,Hoxa3_2783.2,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2"	0	86
"Hoxa5_3415.1"	"Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2"	0	89
"Hoxa6_1040.1"	"Hoxa7_2668.2,Hoxb6_3428.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxc6_3954.2,Hoxd8_2644.1"	0	88
"Hoxa7_2668.2"	"Hoxa6_1040.1,Hoxb6_3428.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxc6_3954.2,Hoxd8_2644.1"	0	81
"Hoxa9_2622.2"	"Hoxa10_2318.1,Hoxa11_2218.1,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1"	0	80
"Hoxb13_3479.1"	"Hoxa13_3126.1,Hoxc13_3127.1,Hoxd13_2356.1"	1	83
"Hoxb3_1720.2"	"Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2"	0	91
"Hoxb4_2627.1"	"Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2"	0	90
"Hoxb5_3122.2"	"Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2"	0	88
"Hoxb6_3428.2"	"Hoxa6_1040.1,Hoxa7_2668.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxc6_3954.2,Hoxd8_2644.1"	0	76
"Hoxb7_3953.1"	"Hoxa6_1040.1,Hoxa7_2668.2,Hoxb6_3428.2,Hoxb8_3780.2,Hoxc6_3954.2,Hoxd8_2644.1"	0	82
"Hoxb8_3780.2"	"Hoxa6_1040.1,Hoxa7_2668.2,Hoxb6_3428.2,Hoxb7_3953.1,Hoxc6_3954.2,Hoxd8_2644.1"	0	79
"Hoxb9_3413.1"	"Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1"	0	85
"Hoxc10_2779.2"	"Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1"	0	77
"Hoxc11_3718.2"	"Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1"	0	82
"Hoxc12_3480.1"	"Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1"	0	68
"Hoxc13_3127.1"	"Hoxa13_3126.1,Hoxd13_2356.1"	0	83
"Hoxc4_3491.1"	"Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc5_2630.2,Hoxd3_1742.2"	0	84
"Hoxc5_2630.2"	"Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxd3_1742.2"	0	79
"Hoxc6_3954.2"	"Hoxa6_1040.1,Hoxa7_2668.2,Hoxb6_3428.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxd8_2644.1"	0	75
"Hoxc8_3429.2"	"Hoxa6_1040.1,Hoxa7_2668.2,Hoxb6_3428.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxc6_3954.2,Hoxd8_2644.1"	1	86
"Hoxc9_2367.2"	"Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxd10_2368.2,Hoxd11_3873.1"	0	74
"Hoxd10_2368.2"	"Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd11_3873.1"	0	77
"Hoxd11_3873.1"	"Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2"	0	70
"Hoxd12_3481.1"	"Hoxa10_2318.1,Hoxa11_2218.1,Hoxa9_2622.2,Hoxb9_3413.1,Hoxc10_2779.2,Hoxc11_3718.2,Hoxc12_3480.1,Hoxc9_2367.2,Hoxd10_2368.2,Hoxd11_3873.1"	2	79
"Hoxd13_2356.1"	"Hoxa13_3126.1,Hoxc13_3127.1"	0	76
"Hoxd1_3448.1"	"Hoxa1_3425.1"	0	76
"Hoxd3_1742.2"	"Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2"	0	90
"Hoxd8_2644.1"	"Hoxa6_1040.1,Hoxa7_2668.2,Hoxb6_3428.2,Hoxb7_3953.1,Hoxb8_3780.2,Hoxc6_3954.2"	0	82
"Ipf1_3815.1"	"Hlxb9_3422.1,Hoxa3_2783.2,Hoxa4_3426.1,Hoxa5_3415.1,Hoxb3_1720.2,Hoxb4_2627.1,Hoxb5_3122.2,Hoxc4_3491.1,Hoxc5_2630.2,Hoxd3_1742.2"	1	85
"Irx2_0900.3"	"Irx5_2385.1"	0	68
"Irx3_0920.1"	"Irx4_2242.3,Irx6_2623.2"	0	65
"Irx4_2242.3"	"Irx3_0920.1,Irx6_2623.2"	0	68
"Irx5_2385.1"	"Irx2_0900.3"	0	68
"Irx6_2623.2"	"Irx3_0920.1,Irx4_2242.3"	0	63
"Isl2_3430.1"	"Pou4f3_2791.1"	3	33
"Isx_3445.1"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	1	88
"Lbx2_3869.2"	"Barhl1_2590.2,Barhl2_3868.1,Bsx_3483.2,Hmx2_3424.3,Msx1_3031.2,Msx2_3449.1,Msx3_3206.1"	2	69
"Lhx1_2240.2"	"Lhx5_2279.1"	0	92
"Lhx2_0953.2"	"Lhx9_3492.1"	0	86
"Lhx3_3431.1"	"Lhx4_1719.2,Lmx1a_2238.2,Lmx1b_3433.2"	0	80
"Lhx4_1719.2"	"Lhx3_3431.1,Lmx1a_2238.2,Lmx1b_3433.2"	0	61
"Lhx5_2279.1"	"Lhx1_2240.2"	0	92
"Lhx6_2272.1"	"Lhx8_2247.2"	0	87
"Lhx8_2247.2"	"Lhx6_2272.1"	0	87
"Lhx9_3492.1"	"Lhx2_0953.2"	0	86
"Lmx1a_2238.2"	"Lhx3_3431.1,Lhx4_1719.2,Lmx1b_3433.2"	0	76
"Lmx1b_3433.2"	"Lhx3_3431.1,Lhx4_1719.2,Lmx1a_2238.2"	0	74
"Meis1_2335.1"	"Mrg1_2246.2,Mrg2_2302.1"	0	88
"Meox1_2310.2"	"Bsx_3483.2,Hoxa2_3079.1"	1	83
"Mrg1_2246.2"	"Meis1_2335.1,Mrg2_2302.1"	0	89
"Mrg2_2302.1"	"Meis1_2335.1,Mrg1_2246.2"	0	83
"Msx1_3031.2"	"Msx2_3449.1,Msx3_3206.1"	0	93
"Msx2_3449.1"	"Msx1_3031.2,Msx3_3206.1"	0	91
"Msx3_3206.1"	"Msx1_3031.2,Msx2_3449.1"	0	93
"Nkx1-1_3856.3"	"Nkx1-2_3214.1"	0	85
"Nkx1-2_3214.1"	"Nkx1-1_3856.3"	0	85
"Nkx2-2_2823.1"	"Nkx2-3_3435.1,Nkx2-4_3074.1,Nkx2-5_3436.1,Nkx2-6_3437.1,Nkx2-9_3082.1,Titf1_1722.2"	0	78
"Nkx2-3_3435.1"	"Nkx2-2_2823.1,Nkx2-4_3074.1,Nkx2-5_3436.1,Nkx2-6_3437.1,Nkx2-9_3082.1,Titf1_1722.2"	0	85
"Nkx2-4_3074.1"	"Nkx2-2_2823.1,Nkx2-3_3435.1,Nkx2-5_3436.1,Nkx2-6_3437.1,Nkx2-9_3082.1,Titf1_1722.2"	0	80
"Nkx2-5_3436.1"	"Nkx2-2_2823.1,Nkx2-3_3435.1,Nkx2-4_3074.1,Nkx2-6_3437.1,Nkx2-9_3082.1,Titf1_1722.2"	0	77
"Nkx2-6_3437.1"	"Nkx2-2_2823.1,Nkx2-3_3435.1,Nkx2-4_3074.1,Nkx2-5_3436.1,Nkx2-9_3082.1,Titf1_1722.2"	0	80
"Nkx2-9_3082.1"	"Nkx2-2_2823.1,Nkx2-3_3435.1,Nkx2-4_3074.1,Nkx2-5_3436.1,Nkx2-6_3437.1,Titf1_1722.2"	0	73
"Nkx3-1_2923.2"	"Bapx1_2343.1"	0	80
"Nkx6-1_2825.1"	"Nkx6-3_3446.1"	0	89
"Nkx6-3_3446.1"	"Nkx6-1_2825.1"	0	89
"Obox1_3970.2"	"Obox2_3438.2,Obox3_3439.1,Obox5_2284.1"	0	84
"Obox2_3438.2"	"Obox1_3970.2,Obox3_3439.1,Obox5_2284.1"	0	71
"Obox3_3439.1"	"Obox1_3970.2,Obox2_3438.2,Obox5_2284.1"	0	83
"Obox5_2284.1"	"Obox1_3970.2,Obox2_3438.2,Obox3_3439.1"	0	85
"Obox6_3440.2"	"Msx1_3031.2,Msx2_3449.1,Msx3_3206.1,Obox1_3970.2,Obox2_3438.2,Obox3_3439.1,Obox5_2284.1"	3	26
"Og2x_3719.1"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	2	76
"Otp_3496.1"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	1	87
"Otx1_2325.1"	"Crx_3485.1,Dmbx1_2277.1,Otx2_3441.1"	0	90
"Otx2_3441.1"	"Crx_3485.1,Dmbx1_2277.1,Otx1_2325.1"	0	89
"Pax4_3989.2"	"Pax6_3838.3,Pitx1_2312.1,Pitx2_2274.3,Pitx3_3497.2"	2	5
"Pax6_3838.3"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Crx_3485.1,Dmbx1_2277.1,Otx1_2325.1,Otx2_3441.1,Pax7_3783.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	1	64
"Pax7_3783.1"	"Pax6_3838.3"	1	57
"Pbx1_3203.1"	"Irx2_0900.3,Irx5_2385.1,Tgif1_2342.2"	5	8
"Phox2a_3947.1"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	0	89
"Phox2b_3948.1"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	0	88
"Pitx1_2312.1"	"Pitx2_2274.3,Pitx3_3497.2"	0	92
"Pitx2_2274.3"	"Pitx1_2312.1,Pitx3_3497.2"	0	93
"Pitx3_3497.2"	"Pitx1_2312.1,Pitx2_2274.3"	0	88
"Pknox1_2364.2"	"Pknox2_3077.2"	0	84
"Pknox2_3077.2"	"Pknox1_2364.2"	0	84
"Pou1f1_3818.1"	"Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1"	1	84
"Pou2f1_3081.2"	"Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1"	0	90
"Pou2f2_3748.1"	"Pou2f1_3081.2,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1"	0	88
"Pou2f3_3986.2"	"Pou2f1_3081.2,Pou2f2_3748.1,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1"	0	82
"Pou3f1_3819.1"	"Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1"	0	86
"Pou3f2_2824.1"	"Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f3_3235.2,Pou3f4_3773.1"	0	80
"Pou3f3_3235.2"	"Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f4_3773.1"	0	52
"Pou3f4_3773.1"	"Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2"	0	88
"Pou4f3_2791.1"	"Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1"	2	67
"Pou6f1_1731.2"	"Pou1f1_3818.1,Pou2f1_3081.2,Pou2f2_3748.1,Pou2f3_3986.2,Pou3f1_3819.1,Pou3f2_2824.1,Pou3f3_3235.2,Pou3f4_3773.1"	2	66
"Prop1_3949.1"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	0	85
"Prrx1_3442.1"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	0	93
"Prrx2_3072.1"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	0	87
"Rax_3443.1"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	0	90
"Rhox11_1765.2"	"Cdx1_2245.1,Cdx2_4272.1,Gsc_2327.3,Msx1_3031.2,Msx2_3449.1,Msx3_3206.1,Obox1_3970.2,Obox2_3438.2,Obox3_3439.1,Obox5_2284.1,Og2x_3719.1,Tlx2_3498.2"	6	0
"Rhox6_4251.1"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Crx_3485.1,Dmbx1_2277.1,Isx_3445.1,Obox6_3440.2,Otp_3496.1,Otx1_2325.1,Otx2_3441.1,Pax6_3838.3,Pax7_3783.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2,Vsx1_1728.1"	7	54
"Shox2_2641.2"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Uncx4.1_2281.2,Vsx1_1728.1"	0	90
"Six1_0935.2"	"Six2_2307.2"	0	77
"Six2_2307.2"	"Six1_0935.2"	0	77
"Six3_1732.2"	"Six6_2267.5"	0	58
"Six4_2860.1"	"Six1_0935.2,Six2_2307.2"	3	55
"Six6_2267.5"	"Six3_1732.2"	0	58
"Tcf1_2666.2"	"Tcf2_0913.2"	1	59
"Tcf2_0913.2"	"Tcf1_2666.2"	1	59
"Tgif1_2342.2"	"Tgif2_3451.1"	1	83
"Tgif2_3451.1"	"Tgif1_2342.2"	1	83
"Titf1_1722.2"	"Nkx2-2_2823.1,Nkx2-3_3435.1,Nkx2-4_3074.1,Nkx2-5_3436.1,Nkx2-6_3437.1,Nkx2-9_3082.1"	0	80
"Tlx2_3498.2"	"Barhl1_2590.2,Barhl2_3868.1"	1	34
"Uncx4.1_2281.2"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Vsx1_1728.1"	0	93
"Vax1_3499.1"	"Emx2_3420.1,Vax2_3500.1"	0	89
"Vax2_3500.1"	"Emx2_3420.1,Vax1_3499.1"	0	93
"Vsx1_1728.1"	"Alx3_3418.2,Alx4_1744.1,Arx_1738.2,Cart1_0997.1,Phox2a_3947.1,Phox2b_3948.1,Prop1_3949.1,Prrx1_3442.1,Prrx2_3072.1,Rax_3443.1,Shox2_2641.2,Uncx4.1_2281.2"	0	90